Query 029494
Match_columns 192
No_of_seqs 173 out of 1025
Neff 4.8
Searched_HMMs 29240
Date Mon Mar 25 22:48:07 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029494.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/029494hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1j8b_A YBAB; hypothetical prot 100.0 3.4E-35 1.2E-39 227.0 11.4 104 84-191 9-112 (112)
2 1ybx_A Conserved hypothetical 100.0 2.6E-34 9E-39 230.8 13.1 101 87-188 42-143 (143)
3 3f42_A Protein HP0035; helicob 100.0 2.1E-29 7.3E-34 191.1 12.6 92 83-182 6-97 (99)
4 1ybx_A Conserved hypothetical 97.0 0.0035 1.2E-07 50.0 8.4 90 82-177 40-136 (143)
5 1j8b_A YBAB; hypothetical prot 94.7 0.024 8.2E-07 43.1 3.7 94 80-184 12-111 (112)
6 3f42_A Protein HP0035; helicob 82.8 2.3 7.9E-05 31.5 5.4 81 85-177 12-96 (99)
7 3r07_C Putative lipoate-protei 65.7 14 0.00047 26.4 5.6 45 114-158 9-57 (91)
8 1lr0_A TOLA protein; domain-sw 58.4 15 0.0005 27.8 4.9 38 122-162 54-91 (129)
9 3twe_A Alpha4H; unknown functi 43.0 40 0.0014 19.2 3.8 24 84-111 2-25 (27)
10 2chh_A Protein RSC3288; lectin 40.7 28 0.00097 26.5 3.8 28 114-141 53-80 (114)
11 3ou5_A Serine hydroxymethyltra 40.5 37 0.0013 31.7 5.4 90 99-189 340-489 (490)
12 2bv4_A Lectin CV-IIL; mannose; 40.4 29 0.00099 26.5 3.8 28 114-141 52-79 (113)
13 2xr4_A Lectin; sugar binding p 40.3 29 0.00099 26.6 3.8 27 114-140 55-81 (116)
14 2k9k_A TONB2; metal transport; 38.0 33 0.0011 24.2 3.7 20 123-142 43-62 (106)
15 1tol_A G3P - TOLA, protein (fu 37.9 24 0.00081 29.7 3.3 35 123-162 156-190 (222)
16 3ge2_A Lipoprotein, putative; 37.6 40 0.0014 26.2 4.3 29 114-142 53-93 (130)
17 1u07_A TONB protein; beta-hair 35.4 35 0.0012 23.4 3.4 26 115-143 23-48 (90)
18 4g2e_A Peroxiredoxin; redox pr 35.3 51 0.0017 24.2 4.6 31 125-155 122-153 (157)
19 2wra_A Lectin, BCLA; sugar bin 34.6 40 0.0014 26.2 3.8 28 114-141 59-86 (128)
20 3dqg_A Heat shock 70 kDa prote 34.3 1.2E+02 0.0042 23.1 6.8 42 120-162 91-134 (151)
21 2po1_B Probable exosome comple 34.0 1.5E+02 0.0051 24.4 7.7 52 120-174 220-272 (277)
22 3h0x_A 78 kDa glucose-regulate 33.3 1.6E+02 0.0054 22.4 7.7 52 113-164 83-137 (152)
23 3m7n_D Probable exosome comple 32.5 1.4E+02 0.0046 24.8 7.2 36 121-159 184-223 (258)
24 2op6_A Heat shock 70 kDa prote 32.4 1.6E+02 0.0053 22.0 7.6 44 120-163 91-136 (152)
25 2wnr_A Probable exosome comple 32.3 1.4E+02 0.0047 24.4 7.2 41 120-162 217-258 (271)
26 3brc_A Conserved protein of un 32.3 47 0.0016 26.6 4.0 46 119-165 106-151 (156)
27 3dd6_A Ribonuclease PH; exorib 31.6 2.2E+02 0.0074 23.4 8.3 55 123-178 197-251 (255)
28 1v2y_A 3300001G02RIK protein; 31.1 71 0.0024 23.3 4.7 40 117-159 1-41 (105)
29 1uzv_A Pseudomonas aeruginosa 31.0 50 0.0017 25.2 3.8 27 115-141 53-80 (114)
30 2wp8_A Exosome complex compone 30.4 1.4E+02 0.0049 24.9 7.1 41 120-162 231-272 (305)
31 3keb_A Probable thiol peroxida 29.9 74 0.0025 26.0 5.1 41 124-164 139-180 (224)
32 2npb_A Selenoprotein W; struct 29.4 1.6E+02 0.0054 21.2 6.2 58 106-166 26-87 (96)
33 3n8e_A Stress-70 protein, mito 29.3 2.1E+02 0.0072 22.5 8.1 51 113-164 103-156 (182)
34 1r6l_A Ribonuclease PH; beta-a 29.1 2.2E+02 0.0075 22.7 7.8 42 121-162 185-226 (239)
35 3dob_A Heat shock 70 kDa prote 28.7 1.8E+02 0.0061 22.1 6.9 44 120-163 91-136 (152)
36 2nn6_A Polymyositis/scleroderm 28.5 2.3E+02 0.0079 24.7 8.3 42 120-162 234-275 (358)
37 3a7r_A Lipoate-protein ligase 28.3 1E+02 0.0036 26.4 6.0 42 115-156 255-298 (337)
38 1udn_A Ribonuclease PH, RNAse 28.0 1.6E+02 0.0056 23.9 6.9 43 120-162 183-225 (255)
39 3m7n_G Probable exosome comple 27.9 1.3E+02 0.0045 24.5 6.3 39 120-160 208-247 (259)
40 1oys_A Ribonuclease PH; transf 27.4 1.6E+02 0.0055 23.7 6.7 41 122-162 186-226 (245)
41 3lay_A Zinc resistance-associa 26.7 1.2E+02 0.004 24.3 5.6 39 147-187 111-149 (175)
42 2kzx_A Uncharacterized protein 26.6 43 0.0015 25.2 2.9 19 122-141 20-38 (131)
43 3o6u_A Uncharacterized protein 26.3 78 0.0027 23.8 4.2 27 114-141 6-39 (128)
44 2od0_A Hypothetical protein VP 26.2 41 0.0014 24.0 2.5 27 136-163 78-104 (105)
45 1vqz_A Lipoate-protein ligase, 25.8 99 0.0034 26.7 5.4 44 114-157 261-306 (341)
46 2k9i_A Plasmid PRN1, complete 25.4 52 0.0018 20.1 2.7 34 132-165 9-49 (55)
47 3kij_A Probable glutathione pe 24.7 1.2E+02 0.004 22.4 5.0 38 125-166 139-176 (180)
48 3b4t_A Ribonuclease PH; RNAse, 24.6 2.8E+02 0.0097 22.5 8.2 55 121-176 190-244 (262)
49 2ia9_A Putative septation prot 24.5 51 0.0017 24.3 2.8 48 122-169 22-93 (100)
50 3b0b_C CENP-X, centromere prot 23.9 46 0.0016 23.6 2.4 32 136-167 26-57 (81)
51 2nn6_C Exosome complex exonucl 21.5 2.7E+02 0.0091 22.7 7.0 41 120-162 220-261 (278)
52 1wxv_A BAG-family molecular ch 21.1 1.6E+02 0.0054 19.8 4.7 26 117-142 1-26 (92)
53 4dra_E Centromere protein X; D 20.8 57 0.002 23.4 2.4 31 137-167 31-61 (84)
54 4gqc_A Thiol peroxidase, perox 20.4 2.1E+02 0.007 21.1 5.6 26 125-150 124-150 (164)
No 1
>1j8b_A YBAB; hypothetical protein, structural genomics, structure function project, S2F, unknown function; HET: MSE; 1.75A {Haemophilus influenzae RD} SCOP: d.222.1.1 PDB: 1pug_A
Probab=100.00 E-value=3.4e-35 Score=226.96 Aligned_cols=104 Identities=28% Similarity=0.426 Sum_probs=88.4
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHhccEEEEEECCCeEEEEEecCcceEEEEeCcccccCCHHHHHHHHHHHHHHHH
Q 029494 84 NMQNLYETVKKAQMVVQVEAVRVQKELAAAEFDGYCEGELIKVTLSGNQQPVRTEITEAAMELGAEKLSLLVTEAYKDAH 163 (192)
Q Consensus 84 nm~~L~~~~KkaQe~mQ~km~klQeeL~~~~vtgsSggGlVkVtvnG~gev~~V~Idp~~l~~D~E~LedLI~aAvNdA~ 163 (192)
||++|+ +|||+ ||++++++|+||++++|+|+|+||+|+||+||+++|++|+|||+++++|+|+|||||++|+|+|+
T Consensus 9 nm~~mm---kqaq~-mQ~~m~~~QeeL~~~~v~g~sggG~V~Vt~~G~~ev~~i~Idp~~~~~d~E~LedlI~aA~ndA~ 84 (112)
T 1j8b_A 9 GLGGLM---KQAQQ-MQEKMQKMQEEIAQLEVTGESGAGLVKITINGAHNCRRIDIDPSLMEDDKEMLEDLIAAAFNDAV 84 (112)
T ss_dssp -CCCHH---HHHHH-HHHHHHHHHHHHTTSEEEEEEGGGTEEEEEETTCCEEEEEECGGGGGSCHHHHHHHHHHHHHHHH
T ss_pred CHHHHH---HHHHH-HHHHHHHHHHHHhccEEEEEECCCEEEEEEecCceEEEEEECHHHHhCCHHHHHHHHHHHHHHHH
Confidence 566665 77787 79999999999999999999999999999999999999999999998899999999999999999
Q ss_pred HHHHHHHHHHHHhhhcCCCCCCCCCCCC
Q 029494 164 QKSVLAMKERMSDLAQSLGMPQGLSEGL 191 (192)
Q Consensus 164 ~Ka~e~~~e~m~~ltGGl~lP~Gl~~g~ 191 (192)
+++++.++++|++++|||+|||||+.++
T Consensus 85 ~ka~~~~~e~m~~~tgGl~lppG~~~pf 112 (112)
T 1j8b_A 85 RRAEELQKEKMASVTAGMPLPPGMKFPF 112 (112)
T ss_dssp HHHHHHHHHHHHHHTCC-----------
T ss_pred HHHHHHHHHHHHHHhCCCCCCCCCCCCC
Confidence 9999999999999999999988997653
No 2
>1ybx_A Conserved hypothetical protein; ST genomics, PSI, protein structure initiative, southeast COLL for structural genomics, secsg; HET: MSE; 1.80A {Clostridium thermocellum}
Probab=100.00 E-value=2.6e-34 Score=230.76 Aligned_cols=101 Identities=26% Similarity=0.318 Sum_probs=85.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccEEEEEECCCeEEEEEecCcceEEEEeCcccccC-CHHHHHHHHHHHHHHHHHH
Q 029494 87 NLYETVKKAQMVVQVEAVRVQKELAAAEFDGYCEGELIKVTLSGNQQPVRTEITEAAMEL-GAEKLSLLVTEAYKDAHQK 165 (192)
Q Consensus 87 ~L~~~~KkaQe~mQ~km~klQeeL~~~~vtgsSggGlVkVtvnG~gev~~V~Idp~~l~~-D~E~LedLI~aAvNdA~~K 165 (192)
||.+++||||+ ||++++++|+||++++|+|+|+||+|+||+||+++|++|+|||+++++ |+|+|||||++|+|||+++
T Consensus 42 nm~~mmkQAQk-mQ~km~k~QeeL~~~eveg~sGgGlVkVtvnG~~ev~~I~Idp~lldpeD~E~LeDLI~aAvNdA~~k 120 (143)
T 1ybx_A 42 NINNLVKQAQK-MQRDMERVQEELKEKTVEASAGGGAVTVVATGRKDIKEITIKPEVVDPDDVEMLQDLILAAVNEALRK 120 (143)
T ss_dssp -CHHHHHHHHH-HHHHHHHHHHHHHHCEEEEEETTTTEEEEEETTCCEEEEEECGGGCCTTCHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHH-HHHHHHHHHHHHhcCEEEEEECCCEEEEEEecCceEEEEEECHHHcCCcCHHHHHHHHHHHHHHHHHH
Confidence 44444588888 799999999999999999999999999999999999999999999996 9999999999999999999
Q ss_pred HHHHHHHHHHhhhcCCCCCCCCC
Q 029494 166 SVLAMKERMSDLAQSLGMPQGLS 188 (192)
Q Consensus 166 a~e~~~e~m~~ltGGl~lP~Gl~ 188 (192)
+++.++++|.+++|||+|||||+
T Consensus 121 a~e~~~e~M~~ltgGl~lpPG~f 143 (143)
T 1ybx_A 121 ADEMVTAEISKITGGLGGIPGLF 143 (143)
T ss_dssp HHHHHHHHHHHHC----------
T ss_pred HHHHHHHHHHHHhCCCCCCCCCC
Confidence 99999999999999999977973
No 3
>3f42_A Protein HP0035; helicobacter pylori unknown-function, structural genomics, P protein structure initiative; HET: MSE; 1.78A {Helicobacter pylori}
Probab=99.96 E-value=2.1e-29 Score=191.09 Aligned_cols=92 Identities=12% Similarity=0.188 Sum_probs=85.1
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHhccEEEEEECCCeEEEEEecCcceEEEEeCcccccCCHHHHHHHHHHHHHHH
Q 029494 83 GNMQNLYETVKKAQMVVQVEAVRVQKELAAAEFDGYCEGELIKVTLSGNQQPVRTEITEAAMELGAEKLSLLVTEAYKDA 162 (192)
Q Consensus 83 gnm~~L~~~~KkaQe~mQ~km~klQeeL~~~~vtgsSggGlVkVtvnG~gev~~V~Idp~~l~~D~E~LedLI~aAvNdA 162 (192)
+||++|| |+ ||++|+++|++|++++|+|+|+||+|+||+||+++|++|+|||+++ +|+|+|||||++|+|+|
T Consensus 6 gnm~~lm------q~-mQ~~m~~~QeeL~~~~v~g~sggG~V~Vt~~G~~ev~~i~Idp~~~-eD~E~LeDLI~aA~ndA 77 (99)
T 3f42_A 6 SQLGGLL------DG-MKKEFSQLEEKNKDTIHTSKSGGGMVSVSFNGLGELVDLQIDDSLL-EDKEAMQIYLMSALNDG 77 (99)
T ss_dssp HHHHHHH------HH-HHHHHHHHHHHHHTCEEEEEEGGGTEEEEEETTSCEEEEEECGGGG-GCHHHHHHHHHHHHHHH
T ss_pred hhHHHHH------HH-HHHHHHHHHHHHhcCEEEEEECCCEEEEEEecCceEEEEEECHHHh-CCHHHHHHHHHHHHHHH
Confidence 4788887 44 6999999999999999999999999999999999999999999999 79999999999999999
Q ss_pred HHHHHHHHHHHHHhhhcCCC
Q 029494 163 HQKSVLAMKERMSDLAQSLG 182 (192)
Q Consensus 163 ~~Ka~e~~~e~m~~ltGGl~ 182 (192)
++++++.++++|++++|||+
T Consensus 78 ~~k~~~~~~e~m~~ltgGl~ 97 (99)
T 3f42_A 78 YKAVEENRKNLAFNMLGNFA 97 (99)
T ss_dssp HHHHHHHHHHHHHHHHC---
T ss_pred HHHHHHHHHHHHHHHhcCCC
Confidence 99999999999999999884
No 4
>1ybx_A Conserved hypothetical protein; ST genomics, PSI, protein structure initiative, southeast COLL for structural genomics, secsg; HET: MSE; 1.80A {Clostridium thermocellum}
Probab=96.95 E-value=0.0035 Score=50.00 Aligned_cols=90 Identities=16% Similarity=0.172 Sum_probs=64.3
Q ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHH-------hccEEEEEECCCeEEEEEecCcceEEEEeCcccccCCHHHHHHH
Q 029494 82 LGNMQNLYETVKKAQMVVQVEAVRVQKEL-------AAAEFDGYCEGELIKVTLSGNQQPVRTEITEAAMELGAEKLSLL 154 (192)
Q Consensus 82 ~gnm~~L~~~~KkaQe~mQ~km~klQeeL-------~~~~vtgsSggGlVkVtvnG~gev~~V~Idp~~l~~D~E~LedL 154 (192)
++||++|+++++++|+.|++--+++.+.- .-++|+.+..+..+.|+++..- ++= -|.+.| .+.|-..
T Consensus 40 ~gnm~~mmkQAQkmQ~km~k~QeeL~~~eveg~sGgGlVkVtvnG~~ev~~I~Idp~l--ldp-eD~E~L---eDLI~aA 113 (143)
T 1ybx_A 40 GGNINNLVKQAQKMQRDMERVQEELKEKTVEASAGGGAVTVVATGRKDIKEITIKPEV--VDP-DDVEML---QDLILAA 113 (143)
T ss_dssp ---CHHHHHHHHHHHHHHHHHHHHHHHCEEEEEETTTTEEEEEETTCCEEEEEECGGG--CCT-TCHHHH---HHHHHHH
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHhcCEEEEEECCCEEEEEEecCceEEEEEECHHH--cCC-cCHHHH---HHHHHHH
Confidence 35899999999999987665555555432 2378888888999999998763 210 244555 3478899
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhh
Q 029494 155 VTEAYKDAHQKSVLAMKERMSDL 177 (192)
Q Consensus 155 I~aAvNdA~~Ka~e~~~e~m~~l 177 (192)
|-+|+.+|.+.+++.+.+....+
T Consensus 114 vNdA~~ka~e~~~e~M~~ltgGl 136 (143)
T 1ybx_A 114 VNEALRKADEMVTAEISKITGGL 136 (143)
T ss_dssp HHHHHHHHHHHHHHHHHHHC---
T ss_pred HHHHHHHHHHHHHHHHHHHhCCC
Confidence 99999999999999999988766
No 5
>1j8b_A YBAB; hypothetical protein, structural genomics, structure function project, S2F, unknown function; HET: MSE; 1.75A {Haemophilus influenzae RD} SCOP: d.222.1.1 PDB: 1pug_A
Probab=94.74 E-value=0.024 Score=43.07 Aligned_cols=94 Identities=12% Similarity=0.174 Sum_probs=62.6
Q ss_pred CccccHHHHHHHHHHHHHHHHHHHHHHHHHHh----ccEEEEEECCCeEEEEEecCcceEEEEeCcccccCCHHHHHHHH
Q 029494 80 GILGNMQNLYETVKKAQMVVQVEAVRVQKELA----AAEFDGYCEGELIKVTLSGNQQPVRTEITEAAMELGAEKLSLLV 155 (192)
Q Consensus 80 Gm~gnm~~L~~~~KkaQe~mQ~km~klQeeL~----~~~vtgsSggGlVkVtvnG~gev~~V~Idp~~l~~D~E~LedLI 155 (192)
.|+...+.|- +++++ +|+++++..-+-. -++|+.+..+..+.|+++.. +++ -|++.|+ +.|-..|
T Consensus 12 ~mmkqaq~mQ---~~m~~-~QeeL~~~~v~g~sggG~V~Vt~~G~~ev~~i~Idp~--~~~--~d~E~Le---dlI~aA~ 80 (112)
T 1j8b_A 12 GLMKQAQQMQ---EKMQK-MQEEIAQLEVTGESGAGLVKITINGAHNCRRIDIDPS--LME--DDKEMLE---DLIAAAF 80 (112)
T ss_dssp CHHHHHHHHH---HHHHH-HHHHHTTSEEEEEEGGGTEEEEEETTCCEEEEEECGG--GGG--SCHHHHH---HHHHHHH
T ss_pred HHHHHHHHHH---HHHHH-HHHHHhccEEEEEECCCEEEEEEecCceEEEEEECHH--HHh--CCHHHHH---HHHHHHH
Confidence 3434444444 45555 4667765543333 37888888899999999875 444 4777774 4788999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhh--hcCCCCC
Q 029494 156 TEAYKDAHQKSVLAMKERMSDL--AQSLGMP 184 (192)
Q Consensus 156 ~aAvNdA~~Ka~e~~~e~m~~l--tGGl~lP 184 (192)
-+|+.+|.+.+++.+.+....+ ..||++|
T Consensus 81 ndA~~ka~~~~~e~m~~~tgGl~lppG~~~p 111 (112)
T 1j8b_A 81 NDAVRRAEELQKEKMASVTAGMPLPPGMKFP 111 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHTCC----------
T ss_pred HHHHHHHHHHHHHHHHHHhCCCCCCCCCCCC
Confidence 9999999999999999998866 2478877
No 6
>3f42_A Protein HP0035; helicobacter pylori unknown-function, structural genomics, P protein structure initiative; HET: MSE; 1.78A {Helicobacter pylori}
Probab=82.85 E-value=2.3 Score=31.45 Aligned_cols=81 Identities=10% Similarity=0.117 Sum_probs=61.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh----ccEEEEEECCCeEEEEEecCcceEEEEeCcccccCCHHHHHHHHHHHHH
Q 029494 85 MQNLYETVKKAQMVVQVEAVRVQKELA----AAEFDGYCEGELIKVTLSGNQQPVRTEITEAAMELGAEKLSLLVTEAYK 160 (192)
Q Consensus 85 m~~L~~~~KkaQe~mQ~km~klQeeL~----~~~vtgsSggGlVkVtvnG~gev~~V~Idp~~l~~D~E~LedLI~aAvN 160 (192)
|+.|-+.|+++ |+++++..-+-. -++|+.+..+..+.|+++..-- =|++.|+ +.+-..|-+|+.
T Consensus 12 mq~mQ~~m~~~----QeeL~~~~v~g~sggG~V~Vt~~G~~ev~~i~Idp~~~-----eD~E~Le---DLI~aA~ndA~~ 79 (99)
T 3f42_A 12 LDGMKKEFSQL----EEKNKDTIHTSKSGGGMVSVSFNGLGELVDLQIDDSLL-----EDKEAMQ---IYLMSALNDGYK 79 (99)
T ss_dssp HHHHHHHHHHH----HHHHHTCEEEEEEGGGTEEEEEETTSCEEEEEECGGGG-----GCHHHHH---HHHHHHHHHHHH
T ss_pred HHHHHHHHHHH----HHHHhcCEEEEEECCCEEEEEEecCceEEEEEECHHHh-----CCHHHHH---HHHHHHHHHHHH
Confidence 58888666665 667775544433 3788888889999999998743 3777774 578899999999
Q ss_pred HHHHHHHHHHHHHHHhh
Q 029494 161 DAHQKSVLAMKERMSDL 177 (192)
Q Consensus 161 dA~~Ka~e~~~e~m~~l 177 (192)
++.+..++.+.+..+.+
T Consensus 80 k~~~~~~e~m~~ltgGl 96 (99)
T 3f42_A 80 AVEENRKNLAFNMLGNF 96 (99)
T ss_dssp HHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHhcCC
Confidence 99999999999888765
No 7
>3r07_C Putative lipoate-protein ligase A subunit 2; adenylate-forming enzyme, BI-partite, ATP-binding, transferase; 2.70A {Thermoplasma acidophilum dsm 1728}
Probab=65.74 E-value=14 Score=26.44 Aligned_cols=45 Identities=16% Similarity=0.136 Sum_probs=34.5
Q ss_pred EEEEEECCCeEEEEEe-cCcceEEEEeCccccc-CC--HHHHHHHHHHH
Q 029494 114 EFDGYCEGELIKVTLS-GNQQPVRTEITEAAME-LG--AEKLSLLVTEA 158 (192)
Q Consensus 114 ~vtgsSggGlVkVtvn-G~gev~~V~Idp~~l~-~D--~E~LedLI~aA 158 (192)
+.+...++|.|.|.++ -+|.|++++|.-+++- ++ .+.|++.+.-.
T Consensus 9 ~~~~kf~~G~v~v~l~v~~G~I~~vki~GDFf~~p~~~i~~le~~L~G~ 57 (91)
T 3r07_C 9 SKNWKAKKGLIRVTLDLDGNRIKDIHISGDFFMFPEDSINRLEDMLRGS 57 (91)
T ss_dssp EEEEECSSCEEEEEEEEETTEEEEEEEEEEBCCBSTTHHHHHHHHHTTS
T ss_pred EEEEEcCCcEEEEEEEEcCCEEEEEEEEcccCCCcchhHHHHHHHHCCC
Confidence 3455667899999998 5899999999999984 33 67777766543
No 8
>1lr0_A TOLA protein; domain-swapping, TONB, protein transport; 1.91A {Pseudomonas aeruginosa} SCOP: d.212.1.1
Probab=58.38 E-value=15 Score=27.80 Aligned_cols=38 Identities=5% Similarity=0.150 Sum_probs=25.1
Q ss_pred CeEEEEEecCcceEEEEeCcccccCCHHHHHHHHHHHHHHH
Q 029494 122 ELIKVTLSGNQQPVRTEITEAAMELGAEKLSLLVTEAYKDA 162 (192)
Q Consensus 122 GlVkVtvnG~gev~~V~Idp~~l~~D~E~LedLI~aAvNdA 162 (192)
+.|+|+++.+|.|.+++|..+= ....|-+..+.|+..|
T Consensus 54 ~~V~v~l~~dG~v~~v~v~~SS---G~~~lD~AAl~AV~ra 91 (129)
T 1lr0_A 54 VEVLIEMLPDGTITNASVSRSS---GDKPFDSSAVAAVRNV 91 (129)
T ss_dssp EEEEEEECTTSBEEEEEEEECC---SCHHHHHHHHHHHHHH
T ss_pred EEEEEEECCCCCEEEEEEeeCC---CCHHHHHHHHHHHHHh
Confidence 5689999999999999985432 2234444555555443
No 9
>3twe_A Alpha4H; unknown function; HET: PGE; 1.36A {Synthetic} PDB: 3twf_A* 4g4m_A*
Probab=43.02 E-value=40 Score=19.19 Aligned_cols=24 Identities=29% Similarity=0.448 Sum_probs=15.4
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 029494 84 NMQNLYETVKKAQMVVQVEAVRVQKELA 111 (192)
Q Consensus 84 nm~~L~~~~KkaQe~mQ~km~klQeeL~ 111 (192)
|-.+++ |.+.. +|+++.++.++|.
T Consensus 2 nadely---keled-lqerlrklrkklr 25 (27)
T 3twe_A 2 NADELY---KELED-LQERLRKLRKKLR 25 (27)
T ss_dssp HHHHHH---HHHHH-HHHHHHHHHHHHH
T ss_pred cHHHHH---HHHHH-HHHHHHHHHHHhc
Confidence 556676 44444 4668888877765
No 10
>2chh_A Protein RSC3288; lectin, sugar-binding protein, D-mannose, plant pathogen, hypothetical protein; HET: MAN BMA; 1.0A {Ralstonia solanacearum} SCOP: b.115.1.1 PDB: 1uqx_A*
Probab=40.69 E-value=28 Score=26.53 Aligned_cols=28 Identities=18% Similarity=0.067 Sum_probs=22.4
Q ss_pred EEEEEECCCeEEEEEecCcceEEEEeCc
Q 029494 114 EFDGYCEGELIKVTLSGNQQPVRTEITE 141 (192)
Q Consensus 114 ~vtgsSggGlVkVtvnG~gev~~V~Idp 141 (192)
+.+-.|+.|.|+|+|.++|+..++.-..
T Consensus 53 t~~l~Sg~GkVriev~~nGKps~l~s~~ 80 (114)
T 2chh_A 53 SQVLNSGSGAIKIQVSVNGKPSDLVSNQ 80 (114)
T ss_dssp EEEEECTTSEEEEEEEETTEECEEEEEE
T ss_pred eEEEecCCCeEEEEEEeCCccccceeee
Confidence 3456789999999999999998876433
No 11
>3ou5_A Serine hydroxymethyltransferase, mitochondrial; structural genomics, STRU genomics consortium, SGC; 2.04A {Homo sapiens}
Probab=40.54 E-value=37 Score=31.68 Aligned_cols=90 Identities=17% Similarity=0.268 Sum_probs=56.2
Q ss_pred HHHHHHHHHHHHhccEEEEEEC---CCeEEEEEecCc-----------------------------ceEEEEeCccc---
Q 029494 99 VQVEAVRVQKELAAAEFDGYCE---GELIKVTLSGNQ-----------------------------QPVRTEITEAA--- 143 (192)
Q Consensus 99 mQ~km~klQeeL~~~~vtgsSg---gGlVkVtvnG~g-----------------------------ev~~V~Idp~~--- 143 (192)
+-+..+.+-+.|.+.-|..-++ .-+|-|-+...+ ....|+|--.+
T Consensus 340 Vv~NAkaLA~~L~~~G~~vvsGgTdnHlvLvDl~~~g~tG~~ae~~Le~agItvNkN~iP~D~sp~~~SGiRiGTpa~Tt 419 (490)
T 3ou5_A 340 VLKNARAMADALLERGYSLVSGGTDNHLVLVDLRPKGLDGARAERVLELVSITANKNTCPGDRSAITPGGLRLGAPALTS 419 (490)
T ss_dssp HHHHHHHHHHHHHHTTCEEGGGSCSSSEEEEECGGGTCCHHHHHHHHHHTTEECEEECCTTCCCSSSCSEEEEESHHHHH
T ss_pred HHHHHHHHHHHHHhCCCeeecCCCCceEEEEeccccCCCHHHHHHHHHHcCcEECCCCCCCCCCCCCCCeeEECCHHHHh
Confidence 5666777778887776665543 345555443221 11135553222
Q ss_pred --ccC-CHHHHHHHHHHHHHHHHH----------------------HHHHHHHHHHHhhhcCCCCCCCCCC
Q 029494 144 --MEL-GAEKLSLLVTEAYKDAHQ----------------------KSVLAMKERMSDLAQSLGMPQGLSE 189 (192)
Q Consensus 144 --l~~-D~E~LedLI~aAvNdA~~----------------------Ka~e~~~e~m~~ltGGl~lP~Gl~~ 189 (192)
+.+ |.+.+.++|..|++.+.. +.-+.+++++.+++..|++| |++.
T Consensus 420 RG~~e~dm~~IA~~I~~~l~~~~~~~~~~~kl~~f~~~~~~~~~~~~~i~~lr~~V~~l~~~FP~p-g~d~ 489 (490)
T 3ou5_A 420 RQFREDDFRRVVDFIDEGVNIGLEVKSKTAKLQDFKSFLLKDSETSQRLANLRQRVEQFARAFPMP-GFDE 489 (490)
T ss_dssp TTCCHHHHHHHHHHHHHHHHHHHHHHHTCCSHHHHHHHHHHCHHHHHHHHHHHHHHHHHHTTSCCS-SCSC
T ss_pred CCCCHHHHHHHHHHHHHHHHhhhhhhhhhhhhHHHHHHHhcCcccHHHHHHHHHHHHHHHHhCCCC-CCCC
Confidence 233 788999999999975432 22345778889999999998 8864
No 12
>2bv4_A Lectin CV-IIL; mannose; HET: MMA; 1.0A {Chromobacterium violaceum} PDB: 2boi_A*
Probab=40.42 E-value=29 Score=26.45 Aligned_cols=28 Identities=7% Similarity=-0.013 Sum_probs=22.4
Q ss_pred EEEEEECCCeEEEEEecCcceEEEEeCc
Q 029494 114 EFDGYCEGELIKVTLSGNQQPVRTEITE 141 (192)
Q Consensus 114 ~vtgsSggGlVkVtvnG~gev~~V~Idp 141 (192)
+.+-.|+.|.|+|+|.++|+..++.-..
T Consensus 52 t~~l~Sg~GkVriev~~nGKps~l~s~~ 79 (113)
T 2bv4_A 52 TKVINSGSGNVRVQITANGRQSDLVSSQ 79 (113)
T ss_dssp EEEEECTTSEEEEEEEETTEECEEEEEE
T ss_pred eEEEecCCCeEEEEEEeCCccccceeee
Confidence 3456789999999999999998876433
No 13
>2xr4_A Lectin; sugar binding protein, LUNG, pathogen; 1.90A {Burkholderia cenocepacia}
Probab=40.27 E-value=29 Score=26.56 Aligned_cols=27 Identities=15% Similarity=0.054 Sum_probs=22.5
Q ss_pred EEEEEECCCeEEEEEecCcceEEEEeC
Q 029494 114 EFDGYCEGELIKVTLSGNQQPVRTEIT 140 (192)
Q Consensus 114 ~vtgsSggGlVkVtvnG~gev~~V~Id 140 (192)
+.+-.|+.|.|+|+|.++|+..++.-.
T Consensus 55 t~~lnSg~GkVriev~~nGkps~l~s~ 81 (116)
T 2xr4_A 55 TKVLDSGNGRVRVIVMANGRPSRLGSR 81 (116)
T ss_dssp EEEEECTTSEEEEEEEETTEECEEEEE
T ss_pred eEEEecCCCeEEEEEEeCCccccceee
Confidence 446789999999999999999887643
No 14
>2k9k_A TONB2; metal transport; NMR {Listonella anguillarum}
Probab=37.97 E-value=33 Score=24.18 Aligned_cols=20 Identities=15% Similarity=0.323 Sum_probs=17.4
Q ss_pred eEEEEEecCcceEEEEeCcc
Q 029494 123 LIKVTLSGNQQPVRTEITEA 142 (192)
Q Consensus 123 lVkVtvnG~gev~~V~Idp~ 142 (192)
.|+++|+-+|+|.+++|-.+
T Consensus 43 ~v~f~I~~~G~v~~~~v~~s 62 (106)
T 2k9k_A 43 TLSFTIDTTGKAVDINVVDA 62 (106)
T ss_dssp EEEEEEETTTEEEEEEEEEE
T ss_pred EEEEEECCCCcEEEEEEEEc
Confidence 48899999999999999554
No 15
>1tol_A G3P - TOLA, protein (fusion protein consisting of minor coat protein, glycine rich linker, TOLA,...; bacteriophage M13, phage infection; 1.85A {Enterobacteria phage M13} SCOP: b.37.1.1 d.212.1.1 PDB: 2x9a_B 3qdr_A* 3qdp_A* 1s62_A
Probab=37.94 E-value=24 Score=29.66 Aligned_cols=35 Identities=14% Similarity=0.041 Sum_probs=23.7
Q ss_pred eEEEEEecCcceEEEEeCcccccCCHHHHHHHHHHHHHHH
Q 029494 123 LIKVTLSGNQQPVRTEITEAAMELGAEKLSLLVTEAYKDA 162 (192)
Q Consensus 123 lVkVtvnG~gev~~V~Idp~~l~~D~E~LedLI~aAvNdA 162 (192)
.|+|+++.+|+|++++|. .-| ..|-+.+++|+++|
T Consensus 156 ~Vrf~L~pdG~Vlsv~V~----SGd-~aLD~AAl~AVrrA 190 (222)
T 1tol_A 156 TLRIKLAPDGMLLDIKPE----GGD-PALCQAALAAAKLA 190 (222)
T ss_dssp EEEEEECTTSCEEEEEEE----EEC-HHHHHHHHHHHHHC
T ss_pred EEEEEECCCCCEEEEEec----CCC-HHHHHHHHHHHHhC
Confidence 488999999999999997 223 33444455555443
No 16
>3ge2_A Lipoprotein, putative; beta-barrel, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics; 2.20A {Streptococcus pneumoniae}
Probab=37.58 E-value=40 Score=26.22 Aligned_cols=29 Identities=21% Similarity=0.463 Sum_probs=24.2
Q ss_pred EEEEEECCCeEEEEEe------------cCcceEEEEeCcc
Q 029494 114 EFDGYCEGELIKVTLS------------GNQQPVRTEITEA 142 (192)
Q Consensus 114 ~vtgsSggGlVkVtvn------------G~gev~~V~Idp~ 142 (192)
+++|...+..++.+|+ |..+|+-|.|||.
T Consensus 53 TY~g~de~D~iTLvI~G~tGTwTe~E~DGdqEikqV~iD~~ 93 (130)
T 3ge2_A 53 TYTGQDDGDRITLVVTGTTGTWTELESDGDQKVKQVTFDSA 93 (130)
T ss_dssp EEEEEETTEEEEEEEETTEEEEEEECTTSCEEEEEEEEETT
T ss_pred eEEcccCCcEEEEEEeCCcceeEEEccCCCeeeEEEEEccC
Confidence 5677788888888887 6889999999986
No 17
>1u07_A TONB protein; beta-hairpin, protein transport; 1.13A {Escherichia coli} SCOP: d.212.1.2 PDB: 2gsk_B* 1ihr_A 1qxx_A
Probab=35.36 E-value=35 Score=23.37 Aligned_cols=26 Identities=15% Similarity=0.252 Sum_probs=20.2
Q ss_pred EEEEECCCeEEEEEecCcceEEEEeCccc
Q 029494 115 FDGYCEGELIKVTLSGNQQPVRTEITEAA 143 (192)
Q Consensus 115 vtgsSggGlVkVtvnG~gev~~V~Idp~~ 143 (192)
++|+. .|+++|+.+|+|.+++|-.+-
T Consensus 23 ~~G~V---~v~~~i~~~G~v~~~~v~~ss 48 (90)
T 1u07_A 23 IEGQV---KVKFDVTPDGRVDNVQILSAK 48 (90)
T ss_dssp CCEEE---EEEEEECTTSCEEEEEEEEEE
T ss_pred CceEE---EEEEEECCCCCEEEEEEEecC
Confidence 34554 489999999999999996543
No 18
>4g2e_A Peroxiredoxin; redox protein, structural genomics, NPPSFA, national project protein structural and functional analyses; 1.40A {Sulfolobus tokodaii} PDB: 2ywn_A 3hjp_A
Probab=35.31 E-value=51 Score=24.24 Aligned_cols=31 Identities=3% Similarity=0.040 Sum_probs=25.0
Q ss_pred EEEEecCcceEEEEeCcccccC-CHHHHHHHH
Q 029494 125 KVTLSGNQQPVRTEITEAAMEL-GAEKLSLLV 155 (192)
Q Consensus 125 kVtvnG~gev~~V~Idp~~l~~-D~E~LedLI 155 (192)
++.++.+|.|+-..+.+....+ +.+.+.++|
T Consensus 122 tflID~~G~I~~~~~~~~~~~~~~~~eil~~l 153 (157)
T 4g2e_A 122 VFVIDKEGKVRYKWVSDDPTKEPPYDEIEKVV 153 (157)
T ss_dssp EEEECTTSBEEEEEEESSTTCCCCHHHHHHHH
T ss_pred EEEECCCCEEEEEEECCCCCCCCCHHHHHHHH
Confidence 6789999999999998887765 777666555
No 19
>2wra_A Lectin, BCLA; sugar binding protein, bacterial lectin, oligosaccharides; HET: MAN; 1.10A {Burkholderia cenocepacia} PDB: 2wr9_A* 2vnv_A*
Probab=34.55 E-value=40 Score=26.16 Aligned_cols=28 Identities=21% Similarity=0.138 Sum_probs=23.0
Q ss_pred EEEEEECCCeEEEEEecCcceEEEEeCc
Q 029494 114 EFDGYCEGELIKVTLSGNQQPVRTEITE 141 (192)
Q Consensus 114 ~vtgsSggGlVkVtvnG~gev~~V~Idp 141 (192)
+.+-.|+.|.|+|+|.++|+...+.-..
T Consensus 59 t~~l~Sg~GkVriev~~nGKps~l~s~~ 86 (128)
T 2wra_A 59 EATLNSGNGKIRFEVSVNGKPSATDARL 86 (128)
T ss_dssp EEEEECTTSEEEEEEEETTEECEEEEEE
T ss_pred cEEEecCCCeEEEEEEeCCccccceeee
Confidence 4467899999999999999998876433
No 20
>3dqg_A Heat shock 70 kDa protein F; structural genomics, APC90008.12, HSP70 protein, peptide-BIN domain, PSI-2, protein structure initiative; 1.72A {Caenorhabditis elegans}
Probab=34.32 E-value=1.2e+02 Score=23.07 Aligned_cols=42 Identities=19% Similarity=0.324 Sum_probs=31.9
Q ss_pred CCCeEEEEEe--cCcceEEEEeCcccccCCHHHHHHHHHHHHHHH
Q 029494 120 EGELIKVTLS--GNQQPVRTEITEAAMELGAEKLSLLVTEAYKDA 162 (192)
Q Consensus 120 ggGlVkVtvn--G~gev~~V~Idp~~l~~D~E~LedLI~aAvNdA 162 (192)
.+|.++|++. +.|+-.+|.|..+ ...+.+.++.+|.+|-.-+
T Consensus 91 ~nGiL~Vsa~d~~tg~~~~i~I~~~-~~Ls~~ei~~~~~~a~~~~ 134 (151)
T 3dqg_A 91 ANGIVNVSARDRGTGKEQQIVIQSS-GGLSKDQIENMIKEAEKNA 134 (151)
T ss_dssp TTSEEEEEEEETTTCCEEEEEEECS-SSSCHHHHHHHHHHHHHHH
T ss_pred cCcEEEEEEEEccCCCEeEEEEecC-CCCCHHHHHHHHHHHHHHH
Confidence 4788888775 6678889999877 4558899999887765444
No 21
>2po1_B Probable exosome complex exonuclease 2; RNAse PH, hydrolase/hydrolase/RNA complex; 1.94A {Pyrococcus abyssi} PDB: 2po0_B* 2pnz_B 2po2_B*
Probab=33.96 E-value=1.5e+02 Score=24.39 Aligned_cols=52 Identities=17% Similarity=0.145 Sum_probs=33.4
Q ss_pred CCCeEEEEEecCcceEEEEeCcccccC-CHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029494 120 EGELIKVTLSGNQQPVRTEITEAAMEL-GAEKLSLLVTEAYKDAHQKSVLAMKERM 174 (192)
Q Consensus 120 ggGlVkVtvnG~gev~~V~Idp~~l~~-D~E~LedLI~aAvNdA~~Ka~e~~~e~m 174 (192)
.++.++|.++.+++|..++-.-. .. +.+.|.++|..|...+ ++..+.+++.+
T Consensus 220 ~~~~~~v~~~~~g~i~~lq~~g~--~~~~~~~l~~~l~~A~~~~-~~l~~~~~~~l 272 (277)
T 2po1_B 220 MDGKITITTDETGHISAVQKSEG--GAFKLEEVMYAVETAFKKA-EEIRKLILEAV 272 (277)
T ss_dssp CSEEEEEEECTTSCEEEEEEESS--CCCCHHHHHHHHHHHHHHH-HHHHHHHHHHH
T ss_pred CCCcEEEEEcCCCCEEEEEccCC--CCCCHHHHHHHHHHHHHHH-HHHHHHHHHHH
Confidence 46778999999999999986421 22 7777777776665544 33333344433
No 22
>3h0x_A 78 kDa glucose-regulated protein homolog; structural genomics, APC89502.3, peptide binding, chaperone, BIP, PSI-2; 1.92A {Saccharomyces cerevisiae} PDB: 1ckr_A 7hsc_A
Probab=33.34 E-value=1.6e+02 Score=22.38 Aligned_cols=52 Identities=25% Similarity=0.228 Sum_probs=36.0
Q ss_pred cEEEEE-ECCCeEEEEEe--cCcceEEEEeCcccccCCHHHHHHHHHHHHHHHHH
Q 029494 113 AEFDGY-CEGELIKVTLS--GNQQPVRTEITEAAMELGAEKLSLLVTEAYKDAHQ 164 (192)
Q Consensus 113 ~~vtgs-SggGlVkVtvn--G~gev~~V~Idp~~l~~D~E~LedLI~aAvNdA~~ 164 (192)
++|+-. ..+|.++|++. +.|+-.+|.|..+--..+.+.++.+|.+|-.-+.+
T Consensus 83 I~Vtf~iD~nGiL~V~a~d~~tg~~~~i~I~~~~~~ls~~ei~~~~~~a~~~~~~ 137 (152)
T 3h0x_A 83 IEVTFALDANGILKVSATDKGTGKSESITITNDKGRLTQEEIDRMVEEAEKFASE 137 (152)
T ss_dssp EEEEEEECTTSEEEEEEEETTTCCEEEEEEECCTTCCCHHHHHHHHHHHHHTHHH
T ss_pred EEEEEEEcCCCEEEEEEEEcCCCcEeEEEEecCCCCCCHHHHHHHHHHHHHHHHh
Confidence 344433 33788888876 66778889998765444888999999887654443
No 23
>3m7n_D Probable exosome complex exonuclease 1; exosome, RNA, exonuclease, hydrolase, nuclease, hydrolase-RN; 2.40A {Archaeoglobus fulgidus} PDB: 3m85_D 2ba0_F 2ba1_E
Probab=32.53 E-value=1.4e+02 Score=24.76 Aligned_cols=36 Identities=8% Similarity=0.054 Sum_probs=23.2
Q ss_pred CCeEEEEE-ecC---cceEEEEeCcccccCCHHHHHHHHHHHH
Q 029494 121 GELIKVTL-SGN---QQPVRTEITEAAMELGAEKLSLLVTEAY 159 (192)
Q Consensus 121 gGlVkVtv-nG~---gev~~V~Idp~~l~~D~E~LedLI~aAv 159 (192)
+.-++|.+ +.+ ++|+.|+-+-. + +.+.|.++|..|.
T Consensus 184 ~~d~~va~~~~~~~~~~I~~lq~~g~-~--~~~~l~~~l~~A~ 223 (258)
T 3m7n_D 184 EADMPFAFLIRNGKIESIALLQMDGR-M--TRDEVKQAIELAK 223 (258)
T ss_dssp SEEEEEEEEEETTEEEEEEEEEEEEE-E--CHHHHHHHHHHHH
T ss_pred CceEEEEEEcCCCCCCCEEEEEecCC-c--CHHHHHHHHHHHH
Confidence 44566777 667 88998887631 1 6666666665553
No 24
>2op6_A Heat shock 70 kDa protein D; HSP70/peptide-binding domain, structural genomics, APC90014. 2, protein structure initiative; 1.85A {Caenorhabditis elegans}
Probab=32.38 E-value=1.6e+02 Score=22.02 Aligned_cols=44 Identities=20% Similarity=0.276 Sum_probs=33.2
Q ss_pred CCCeEEEEEe--cCcceEEEEeCcccccCCHHHHHHHHHHHHHHHH
Q 029494 120 EGELIKVTLS--GNQQPVRTEITEAAMELGAEKLSLLVTEAYKDAH 163 (192)
Q Consensus 120 ggGlVkVtvn--G~gev~~V~Idp~~l~~D~E~LedLI~aAvNdA~ 163 (192)
.+|.++|++. +.|+-.++.|..+.-..+.+.++.++..+-.-+.
T Consensus 91 ~nGiL~V~a~d~~tg~~~~i~i~~~~~~ls~eei~~~~~~~~~~~~ 136 (152)
T 2op6_A 91 VNGILHVSAEDKGTGNKNKLTITNDHNRLSPEDIERMINDADKFAA 136 (152)
T ss_dssp TTSCEEEEEEETTTCCEEEEEECSSSSCCCHHHHHHHHHHHHHTHH
T ss_pred CCcEEEEEEEEecCCcEEEEEeeccccCCCHHHHHHHHHHHHHhHh
Confidence 4788888875 7788899999877433478888888887766543
No 25
>2wnr_A Probable exosome complex exonuclease 2; phosphate binding, 3'-5' exoribonuclease, hydrolase; 2.65A {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=32.33 E-value=1.4e+02 Score=24.42 Aligned_cols=41 Identities=7% Similarity=0.025 Sum_probs=27.6
Q ss_pred CCCeEEEEEecCcceEEEEeCcc-cccCCHHHHHHHHHHHHHHH
Q 029494 120 EGELIKVTLSGNQQPVRTEITEA-AMELGAEKLSLLVTEAYKDA 162 (192)
Q Consensus 120 ggGlVkVtvnG~gev~~V~Idp~-~l~~D~E~LedLI~aAvNdA 162 (192)
.++.++|.++.+++|..|+.+-. -+ +.+.|.++|..|...+
T Consensus 217 ~~~~l~va~~~~~~i~~i~~~g~~~~--~~~~l~~~l~~a~~~~ 258 (271)
T 2wnr_A 217 LTARISIGVTEEGSICAMQKGGEGPL--TRDDVLKAVSIAVEKV 258 (271)
T ss_dssp CSEEEEEEEETTSCEEEEEEESSSCB--CHHHHHHHHHHHHHHH
T ss_pred CCCcEEEEEeCCCCEEEEECCCCCCC--CHHHHHHHHHHHHHHH
Confidence 35678888998899999988632 22 6666666655554433
No 26
>3brc_A Conserved protein of unknown function; methanobacterium thermoautotrophicum, STR genomics, MCSG, PSI-2; 1.60A {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=32.28 E-value=47 Score=26.55 Aligned_cols=46 Identities=7% Similarity=0.064 Sum_probs=36.3
Q ss_pred ECCCeEEEEEecCcceEEEEeCcccccCCHHHHHHHHHHHHHHHHHH
Q 029494 119 CEGELIKVTLSGNQQPVRTEITEAAMELGAEKLSLLVTEAYKDAHQK 165 (192)
Q Consensus 119 SggGlVkVtvnG~gev~~V~Idp~~l~~D~E~LedLI~aAvNdA~~K 165 (192)
-|.|...|.|+++|.|..-.++|+-+= ..+.+|+.|..=+.+|+++
T Consensus 106 PGSGSmLvimD~kGRiLtas~SPs~~i-Hk~~ie~~v~~E~~~AL~R 151 (156)
T 3brc_A 106 PGSGSLLVIMDSRGRLLSAAMSPPHVI-HSMEVREAVRSEMTHALER 151 (156)
T ss_dssp TTSCEEEEEEETTSCEEEEEEECCTTT-SCCCHHHHHHHHHHHHHHT
T ss_pred CCCccEEEEEcCCCcEEeeccCchhhh-hcccHHHHHHHHHHHHHHH
Confidence 467999999999999999999887652 4556777777777777664
No 27
>3dd6_A Ribonuclease PH; exoribonuclease, tRNA maturation, RNAse PH., transferase; 1.70A {Bacillus anthracis}
Probab=31.57 E-value=2.2e+02 Score=23.42 Aligned_cols=55 Identities=20% Similarity=0.222 Sum_probs=34.7
Q ss_pred eEEEEEecCcceEEEEeCcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 029494 123 LIKVTLSGNQQPVRTEITEAAMELGAEKLSLLVTEAYKDAHQKSVLAMKERMSDLA 178 (192)
Q Consensus 123 lVkVtvnG~gev~~V~Idp~~l~~D~E~LedLI~aAvNdA~~Ka~e~~~e~m~~lt 178 (192)
-++|.++.+++|+.|+-+-+.-.-+.+.|.++|..|...+ ++.-+.+++.+.++.
T Consensus 197 ~l~Va~~~~g~i~~vq~~g~~~~~~~~~l~~~l~~A~~~~-~~i~~~~~~~l~~~~ 251 (255)
T 3dd6_A 197 DMNVIMTGKGQFVEVQGTGEEATFSRAQLNELLDAAEQGI-FQLIDIQKEALGDIV 251 (255)
T ss_dssp EEEEEEETTSCEEEEEEEESSSCCCHHHHHHHHHHHHHHH-HHHHHHHHHHHGGGG
T ss_pred eEEEEEcCCCcEEEEEecCCCCCcCHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHH
Confidence 3577888899999988763221127777777777665443 444455566665553
No 28
>1v2y_A 3300001G02RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=31.06 E-value=71 Score=23.28 Aligned_cols=40 Identities=10% Similarity=0.076 Sum_probs=28.4
Q ss_pred EEECCCeEEEEE-ecCcceEEEEeCcccccCCHHHHHHHHHHHH
Q 029494 117 GYCEGELIKVTL-SGNQQPVRTEITEAAMELGAEKLSLLVTEAY 159 (192)
Q Consensus 117 gsSggGlVkVtv-nG~gev~~V~Idp~~l~~D~E~LedLI~aAv 159 (192)
|+|++-..+|+| .-+|+...|+|+|+. ..+.|...|.+..
T Consensus 1 ~~~~~~~M~I~Vk~l~g~~~~v~V~~~~---TV~dLK~~I~~~~ 41 (105)
T 1v2y_A 1 GSSGSSGMTVRVCKMDGEVMPVVVVQNA---TVLDLKKAIQRYV 41 (105)
T ss_dssp CCCCCCSEEEEEECSSSCEEEEEECTTC---BHHHHHHHHHHHH
T ss_pred CCCCCCcEEEEEEecCCCEEEEEECCCC---hHHHHHHHHHHHh
Confidence 457777889998 578888999998864 4555555555443
No 29
>1uzv_A Pseudomonas aeruginosa lectin II; fucose, calcium; HET: FUC; 1.0A {Pseudomonas aeruginosa} SCOP: b.115.1.1 PDB: 1our_A 1oux_A 1ovp_A* 1ovs_A* 1oxc_A* 1ous_A* 2boj_A* 2bp6_A* 2vuc_A* 2vud_A* 3dcq_A* 1w8f_A* 1gzt_A* 1w8h_A* 2jdh_A* 2jdk_A* 2jdp_A* 2jdn_A* 2jdm_A* 2jdu_A* ...
Probab=30.98 E-value=50 Score=25.16 Aligned_cols=27 Identities=15% Similarity=0.028 Sum_probs=21.1
Q ss_pred EEEEECC-CeEEEEEecCcceEEEEeCc
Q 029494 115 FDGYCEG-ELIKVTLSGNQQPVRTEITE 141 (192)
Q Consensus 115 vtgsSgg-GlVkVtvnG~gev~~V~Idp 141 (192)
.+-.|+. |.|+|+|.++|+..++.-..
T Consensus 53 ~~l~Sg~~GkVriev~~nGKps~l~s~~ 80 (114)
T 1uzv_A 53 QVLNSGSSGKVQVQVSVNGRPSDLVSAQ 80 (114)
T ss_dssp EEEECTTTCEEEEEEEETTEECEEEEEE
T ss_pred EEEecCCCceEEEEEEeCCccccceeee
Confidence 3456777 99999999999998876433
No 30
>2wp8_A Exosome complex component RRP45; nucleus, hydrolase, RNA-binding, exonucle binding, mitochondrion, rRNA processing; 3.00A {Saccharomyces cerevisiae}
Probab=30.35 E-value=1.4e+02 Score=24.89 Aligned_cols=41 Identities=24% Similarity=0.175 Sum_probs=28.3
Q ss_pred CCCeEEEEEecCcceEEEEeCcccccC-CHHHHHHHHHHHHHHH
Q 029494 120 EGELIKVTLSGNQQPVRTEITEAAMEL-GAEKLSLLVTEAYKDA 162 (192)
Q Consensus 120 ggGlVkVtvnG~gev~~V~Idp~~l~~-D~E~LedLI~aAvNdA 162 (192)
.++.++|+++.+++|+.++-+- -.. +.+.|.++|..|...+
T Consensus 231 ~~~~l~Va~~~~g~i~~l~~~g--~~~~~~~~l~~~l~~A~~~~ 272 (305)
T 2wp8_A 231 RDGVLTVTLNKNREVVQVSKAG--GLPMDALTLMKCCHEAYSII 272 (305)
T ss_dssp CSEEEEEEECTTSEEEEEEEEE--EEEECHHHHHHHHHHHHHHH
T ss_pred cCCcEEEEEcCCCcEEEEEecC--CCCCCHHHHHHHHHHHHHHH
Confidence 4566888899999998888665 122 6777777766665443
No 31
>3keb_A Probable thiol peroxidase; structural genomics, APC40679, PSI-2, Pro structure initiative; HET: MSE; 1.80A {Chromobacterium violaceum}
Probab=29.94 E-value=74 Score=26.04 Aligned_cols=41 Identities=10% Similarity=0.069 Sum_probs=31.5
Q ss_pred EEEEEecCcceEEEEeCcccccC-CHHHHHHHHHHHHHHHHH
Q 029494 124 IKVTLSGNQQPVRTEITEAAMEL-GAEKLSLLVTEAYKDAHQ 164 (192)
Q Consensus 124 VkVtvnG~gev~~V~Idp~~l~~-D~E~LedLI~aAvNdA~~ 164 (192)
-++.|+.+|.|+-+.+.++.... +.+.+-+.|....+++.+
T Consensus 139 ~tfvID~dG~I~~~~~~~~~~~~pd~~evl~~L~~l~~~~~~ 180 (224)
T 3keb_A 139 AIILADAANVVHYSERLANTRDFFDFDAIEKLLQEGEQQAMA 180 (224)
T ss_dssp EEEEECTTCBEEEEEECSBTTCCCCHHHHHHHHHHHHHHC--
T ss_pred EEEEEcCCCEEEEEEecCCCCCCCCHHHHHHHHHHhhhcccc
Confidence 47889999999999999988864 888877777666555443
No 32
>2npb_A Selenoprotein W; structure, thioredoxin-like fold, oxidoreductase; NMR {Mus musculus}
Probab=29.37 E-value=1.6e+02 Score=21.23 Aligned_cols=58 Identities=17% Similarity=0.206 Sum_probs=32.7
Q ss_pred HHHHHhc-cEEEEEE---CCCeEEEEEecCcceEEEEeCcccccCCHHHHHHHHHHHHHHHHHHH
Q 029494 106 VQKELAA-AEFDGYC---EGELIKVTLSGNQQPVRTEITEAAMELGAEKLSLLVTEAYKDAHQKS 166 (192)
Q Consensus 106 lQeeL~~-~~vtgsS---ggGlVkVtvnG~gev~~V~Idp~~l~~D~E~LedLI~aAvNdA~~Ka 166 (192)
+..+... +.|+++. .+|.-.|++|| +++==+....-+ +|.+.|-+.|..+++.|..+.
T Consensus 26 Ll~~Fp~~l~V~~~l~p~~~G~FEV~vng--~lV~SKk~~ggF-P~~~el~q~I~~~i~~~~~~~ 87 (96)
T 2npb_A 26 LEHEFPGCLDICGEGTPQVTGFFEVTVAG--KLVHSKKRGDGY-VDTESKFRKLVTAIKAALAQC 87 (96)
T ss_dssp HHHHSBTTEEEEECCCSSCCSCCEEEETT--EEEEETTTTCCS-SCSHHHHHHHHHHHHHHHHHH
T ss_pred HHHhCCcceEEEEEEcCCCCcEEEEEECC--EEEEEEecCCCC-CChHHHHHHHHHHHhhhhcCC
Confidence 3344443 4555543 35788888865 222111111111 477788888888888877654
No 33
>3n8e_A Stress-70 protein, mitochondrial; beta-sandwich, helix, substrate binding domain, structural G consortium, SGC, chaperone; 2.80A {Homo sapiens}
Probab=29.32 E-value=2.1e+02 Score=22.55 Aligned_cols=51 Identities=18% Similarity=0.173 Sum_probs=36.0
Q ss_pred cEEEEE-ECCCeEEEEEe--cCcceEEEEeCcccccCCHHHHHHHHHHHHHHHHH
Q 029494 113 AEFDGY-CEGELIKVTLS--GNQQPVRTEITEAAMELGAEKLSLLVTEAYKDAHQ 164 (192)
Q Consensus 113 ~~vtgs-SggGlVkVtvn--G~gev~~V~Idp~~l~~D~E~LedLI~aAvNdA~~ 164 (192)
++|+-. ..+|.++|++. +.|+-.+|.|... ...+.+.++.+|.+|-.-+.+
T Consensus 103 IeVtf~iD~nGiL~VsA~d~~tg~~~~i~I~~~-~~Ls~eei~~mi~~a~~~~~e 156 (182)
T 3n8e_A 103 IEVTFDIDANGIVHVSAKDKGTGREQQIVIQSS-GGLSKDDIENMVKNAEKYAEE 156 (182)
T ss_dssp EEEEEEECTTCCEEEEEEETTTCCEEEEEESCC-CCCCHHHHHHHHHHHHHSHHH
T ss_pred EEEEEEEecCCEEEEEEEEcCCCCEeeEEEecC-ccCCHHHHHHHHHHHHHHHHh
Confidence 344433 33788877775 5677889999887 445899999999888654443
No 34
>1r6l_A Ribonuclease PH; beta-alpha-beta-alpha fold, hexamer, phosphate bound, transf; HET: NHE; 1.90A {Pseudomonas aeruginosa} SCOP: d.14.1.4 d.101.1.1 PDB: 1r6m_A
Probab=29.06 E-value=2.2e+02 Score=22.70 Aligned_cols=42 Identities=10% Similarity=0.101 Sum_probs=27.6
Q ss_pred CCeEEEEEecCcceEEEEeCcccccCCHHHHHHHHHHHHHHH
Q 029494 121 GELIKVTLSGNQQPVRTEITEAAMELGAEKLSLLVTEAYKDA 162 (192)
Q Consensus 121 gGlVkVtvnG~gev~~V~Idp~~l~~D~E~LedLI~aAvNdA 162 (192)
+..++|.++.+++++.++.+-..-.-+.+.|.++|..|...+
T Consensus 185 ~~~l~va~~~~g~i~~~~~~g~~~~~~~~~l~~~l~~a~~~~ 226 (239)
T 1r6l_A 185 ETDLNVVMTDAGGFIEVQGTAEGAPFRPAELNAMLELAQQGM 226 (239)
T ss_dssp SEEEEEEEETTSCEEEEEEEESSSCCCHHHHHHHHHHHHHHH
T ss_pred CceEEEEEeCCCCEEEEEEeCCCCCcCHHHHHHHHHHHHHHH
Confidence 456788888889999988754322226666666666555443
No 35
>3dob_A Heat shock 70 kDa protein F44E5.5; structural genomics, APC90015.11, peptide-binding domain, HS 2, protein structure initiative; 2.39A {Caenorhabditis elegans}
Probab=28.71 E-value=1.8e+02 Score=22.14 Aligned_cols=44 Identities=16% Similarity=0.205 Sum_probs=30.2
Q ss_pred CCCeEEEEEe--cCcceEEEEeCcccccCCHHHHHHHHHHHHHHHH
Q 029494 120 EGELIKVTLS--GNQQPVRTEITEAAMELGAEKLSLLVTEAYKDAH 163 (192)
Q Consensus 120 ggGlVkVtvn--G~gev~~V~Idp~~l~~D~E~LedLI~aAvNdA~ 163 (192)
.+|.++|++. +.|+-.+|.|..+--..+.+.++.+|.+|-.-+.
T Consensus 91 ~nGiL~Vsa~d~~tg~~~~i~I~~~~~~Ls~~ei~~~~~~a~~~~~ 136 (152)
T 3dob_A 91 ANGILNVSAEDKSTGKSNRITIQNEKGRLTQSDIDRMVHEAKQFEK 136 (152)
T ss_dssp TTCCEEEEEEETTTCCEEEEEECCC----CHHHHHHHHHHHHHTHH
T ss_pred CCCeEEEEEEEcCCCCEEEEEEEcCCCCCCHHHHHHHHHHHHHHHH
Confidence 3788887775 6778889999876544478888888887754443
No 36
>2nn6_A Polymyositis/scleroderma autoantigen 1; RNA, exosome, PM/SCL, phosphorolytic, hydrolase/transferase complex; 3.35A {Homo sapiens} SCOP: d.14.1.4 d.101.1.1
Probab=28.46 E-value=2.3e+02 Score=24.66 Aligned_cols=42 Identities=7% Similarity=0.011 Sum_probs=28.7
Q ss_pred CCCeEEEEEecCcceEEEEeCcccccCCHHHHHHHHHHHHHHH
Q 029494 120 EGELIKVTLSGNQQPVRTEITEAAMELGAEKLSLLVTEAYKDA 162 (192)
Q Consensus 120 ggGlVkVtvnG~gev~~V~Idp~~l~~D~E~LedLI~aAvNdA 162 (192)
.++.++|.++.+++|+.|+-.-.. .-+.+.|.++|..|...+
T Consensus 234 ~~~~l~Va~t~~g~I~~lqk~G~~-~ls~~~l~~~l~~A~~~~ 275 (358)
T 2nn6_A 234 MDGLLVIAMNKHREICTIQSSGGI-MLLKDQVLRCSKIAGVKV 275 (358)
T ss_dssp CSCEEEEEEETTTEEEEEEEESCC-CCCHHHHHHHHHHHHHHH
T ss_pred cCccEEEEEcCCCeEEEEEeCCCC-CCCHHHHHHHHHHHHHHH
Confidence 366788999999999999954431 116667777666665444
No 37
>3a7r_A Lipoate-protein ligase A; adenylate-forming enzyme, lipoic acid, ATP-binding, cytoplasm, nucleotide-binding, transferase, lipoyl; HET: LAQ; 2.05A {Escherichia coli} PDB: 1x2h_A* 3a7a_A* 1x2g_A*
Probab=28.33 E-value=1e+02 Score=26.38 Aligned_cols=42 Identities=10% Similarity=0.086 Sum_probs=31.6
Q ss_pred EEEEECCCeEEEEEe-cCcceEEEEeCcccccC-CHHHHHHHHH
Q 029494 115 FDGYCEGELIKVTLS-GNQQPVRTEITEAAMEL-GAEKLSLLVT 156 (192)
Q Consensus 115 vtgsSggGlVkVtvn-G~gev~~V~Idp~~l~~-D~E~LedLI~ 156 (192)
.+-.-.+|.|+|.++ -+|.|.+++|.-+.+.+ +.+.|++.+.
T Consensus 255 ~~~r~~~g~v~~~~~v~~g~I~~~~i~gD~~~~~~~~~l~~~L~ 298 (337)
T 3a7r_A 255 LDERFTWGGVELHFDVEKGHITRAQVFTDSLNPAPLEALAGRLQ 298 (337)
T ss_dssp EEEEETTEEEEEEEEEETTEEEEEEEEECCSCCHHHHHHHHHTT
T ss_pred EeeccCCCcEEEEEEEcCCEEEEEEEECCCCCchHHHHHHHHhC
Confidence 344456789999887 57899999999888865 5566666554
No 38
>1udn_A Ribonuclease PH, RNAse PH; transferase, riken structural genomics/proteomics initiative structural genomics; 2.30A {Aquifex aeolicus} SCOP: d.14.1.4 d.101.1.1 PDB: 1udq_A 1uds_A 1udo_A
Probab=28.04 E-value=1.6e+02 Score=23.92 Aligned_cols=43 Identities=12% Similarity=0.079 Sum_probs=28.3
Q ss_pred CCCeEEEEEecCcceEEEEeCcccccCCHHHHHHHHHHHHHHH
Q 029494 120 EGELIKVTLSGNQQPVRTEITEAAMELGAEKLSLLVTEAYKDA 162 (192)
Q Consensus 120 ggGlVkVtvnG~gev~~V~Idp~~l~~D~E~LedLI~aAvNdA 162 (192)
.+..++|.++.+++++.++.+-..-.-+.+.|.++|..|...+
T Consensus 183 ~~~~l~va~~~~g~i~~~q~~g~~~~~~~~~l~~~l~~A~~~~ 225 (255)
T 1udn_A 183 AQVDMNVVGTGSGRLSEVHTMGEEYSFTKDELIKMLDLAQKGI 225 (255)
T ss_dssp CSEEEEEEEETTSCEEEEEEEESSCCCCHHHHHHHHHHHHHHH
T ss_pred CCCCEEEEEeCCCCEEEEEEeCCCCCcCHHHHHHHHHHHHHHH
Confidence 3566888899999999998764322226666666665554433
No 39
>3m7n_G Probable exosome complex exonuclease 2; exosome, RNA, exonuclease, hydrolase, nuclease, hydrolase-RN; 2.40A {Archaeoglobus fulgidus} PDB: 2ba1_H 2ba0_I 3m85_G
Probab=27.88 E-value=1.3e+02 Score=24.52 Aligned_cols=39 Identities=10% Similarity=0.129 Sum_probs=26.6
Q ss_pred CCCeEEEEEecCcceEEEEeCcccccC-CHHHHHHHHHHHHH
Q 029494 120 EGELIKVTLSGNQQPVRTEITEAAMEL-GAEKLSLLVTEAYK 160 (192)
Q Consensus 120 ggGlVkVtvnG~gev~~V~Idp~~l~~-D~E~LedLI~aAvN 160 (192)
.++.++|.++.+++++.++-+-. .. +.+.|.++|..|..
T Consensus 208 ~~~~l~va~~~~g~i~~i~~~g~--~~~~~~~l~~~l~~a~~ 247 (259)
T 3m7n_G 208 GDTTLTITTDKDDNVVAMQKSGG--YLLDEKLFDELLDVSIN 247 (259)
T ss_dssp CSCEEEEEECTTSCEEEEEEESS--CCBCHHHHHHHHHHHHH
T ss_pred CCCcEEEEEeCCCcEEEEECCCC--CCcCHHHHHHHHHHHHH
Confidence 35778999999999999987642 22 66665555554443
No 40
>1oys_A Ribonuclease PH; transferase, tRNA processing; 2.40A {Bacillus subtilis} SCOP: d.14.1.4 d.101.1.1 PDB: 1oyp_A 1oyr_A
Probab=27.37 E-value=1.6e+02 Score=23.73 Aligned_cols=41 Identities=22% Similarity=0.163 Sum_probs=27.6
Q ss_pred CeEEEEEecCcceEEEEeCcccccCCHHHHHHHHHHHHHHH
Q 029494 122 ELIKVTLSGNQQPVRTEITEAAMELGAEKLSLLVTEAYKDA 162 (192)
Q Consensus 122 GlVkVtvnG~gev~~V~Idp~~l~~D~E~LedLI~aAvNdA 162 (192)
..++|.++.+++|..|+-+-..-.-+.+.|.++|..|...+
T Consensus 186 ~~~~v~~~~~g~i~~iq~~g~~~~~~~~~l~~~l~~A~~~~ 226 (245)
T 1oys_A 186 VDMNVIMTGSGRFVELQGTGEEATFSREDLNGLLGLAEKGI 226 (245)
T ss_dssp EEEEEEEETTSCEEEEEEEESSCCCCHHHHHHHHHHHHHHH
T ss_pred CcEEEEEcCCCcEEEEEEeCCCCCcCHHHHHHHHHHHHHHH
Confidence 34678888999999999864321126777777766665443
No 41
>3lay_A Zinc resistance-associated protein; salmonella typhimurium L structural genomics, center for structural genomics of INFE diseases; 2.70A {Salmonella enterica subsp}
Probab=26.69 E-value=1.2e+02 Score=24.29 Aligned_cols=39 Identities=26% Similarity=0.340 Sum_probs=17.7
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCC
Q 029494 147 GAEKLSLLVTEAYKDAHQKSVLAMKERMSDLAQSLGMPQGL 187 (192)
Q Consensus 147 D~E~LedLI~aAvNdA~~Ka~e~~~e~m~~ltGGl~lP~Gl 187 (192)
|.+.+++++.+ +.+...+..+...+...++... +||+|.
T Consensus 111 DeakI~aL~~E-i~~Lr~qL~~~R~k~~~em~Ke-Gip~g~ 149 (175)
T 3lay_A 111 DTAKINAVAKE-MESLGQKLDEQRVKRDVAMAQA-GIPRGA 149 (175)
T ss_dssp CHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHT-TCC---
T ss_pred CHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHh-CCCCCC
Confidence 77777666543 3444444444444444444333 556554
No 42
>2kzx_A Uncharacterized protein; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative; NMR {Clostridium thermocellum}
Probab=26.65 E-value=43 Score=25.18 Aligned_cols=19 Identities=11% Similarity=0.279 Sum_probs=15.4
Q ss_pred CeEEEEEecCcceEEEEeCc
Q 029494 122 ELIKVTLSGNQQPVRTEITE 141 (192)
Q Consensus 122 GlVkVtvnG~gev~~V~Idp 141 (192)
+.|+|||. +|+|++|+|+.
T Consensus 20 ~~V~vtV~-dgkIt~i~i~~ 38 (131)
T 2kzx_A 20 DTVTIEVK-NGKIVSVDWNA 38 (131)
T ss_dssp EEEEEEEE-TTEEEEEEEEE
T ss_pred EEEEEEEE-CCEEEEEEEEE
Confidence 56777774 88999999974
No 43
>3o6u_A Uncharacterized protein CPE2226; structural genomics, protein structure initiative, NESG, CPR biology; 2.50A {Clostridium perfringens}
Probab=26.26 E-value=78 Score=23.78 Aligned_cols=27 Identities=7% Similarity=0.140 Sum_probs=18.9
Q ss_pred EEEEEECC-----C--eEEEEEecCcceEEEEeCc
Q 029494 114 EFDGYCEG-----E--LIKVTLSGNQQPVRTEITE 141 (192)
Q Consensus 114 ~vtgsSgg-----G--lVkVtvnG~gev~~V~Idp 141 (192)
+++|++.+ + .|+|||. +++|++|+|+.
T Consensus 6 tY~g~~~g~~~~g~~v~V~VTVk-dgkIt~i~~~~ 39 (128)
T 3o6u_A 6 DYTVETAKADDHGYKAKLSIKVS-DGKITEAKYNE 39 (128)
T ss_dssp EEEEEESSCCTTSEEEEEEEEES-SSSEEEEEEEE
T ss_pred EEEEEEecccccCCeEEEEEEEE-CCEEEEEEEec
Confidence 56777765 3 3555655 57999999964
No 44
>2od0_A Hypothetical protein VP1028; structural genomics, unknown functi 2, protein structure initiative, midwest center for structu genomics; 1.95A {Vibrio parahaemolyticus} SCOP: d.198.5.2
Probab=26.21 E-value=41 Score=24.02 Aligned_cols=27 Identities=15% Similarity=0.254 Sum_probs=22.4
Q ss_pred EEEeCcccccCCHHHHHHHHHHHHHHHH
Q 029494 136 RTEITEAAMELGAEKLSLLVTEAYKDAH 163 (192)
Q Consensus 136 ~V~Idp~~l~~D~E~LedLI~aAvNdA~ 163 (192)
=+.|++++++ |.+.|.+++..|+..|.
T Consensus 78 y~~v~~~~~~-d~~~l~~~~~~a~~~a~ 104 (105)
T 2od0_A 78 YYAISSELWE-SSDRLIEVAKKSLENAK 104 (105)
T ss_dssp EEECCHHHHH-CHHHHHHHHHHHHHHHH
T ss_pred eEEeCHHHcC-CHHHHHHHHHHHHHHhc
Confidence 4677888886 99999999999988764
No 45
>1vqz_A Lipoate-protein ligase, putative; class II AARS and biotin synthetases fold, SUFE/NIFU fold, S genomics; HET: MSE; 1.99A {Streptococcus pneumoniae} SCOP: d.224.1.3 d.104.1.3
Probab=25.77 E-value=99 Score=26.71 Aligned_cols=44 Identities=5% Similarity=-0.051 Sum_probs=33.6
Q ss_pred EEEEEECCCeEEEEEe-cCcceEEEEeCcccccC-CHHHHHHHHHH
Q 029494 114 EFDGYCEGELIKVTLS-GNQQPVRTEITEAAMEL-GAEKLSLLVTE 157 (192)
Q Consensus 114 ~vtgsSggGlVkVtvn-G~gev~~V~Idp~~l~~-D~E~LedLI~a 157 (192)
..+-....|.|+|.++ -+|.|.+++|.-+.+.. +.+.|++.+.-
T Consensus 261 ~~~~r~~~G~v~~~~~v~~g~I~~~~i~gDf~~~~~~~~l~~~L~G 306 (341)
T 1vqz_A 261 RRGIKFTSGKVEVFANVTESKIQDIKIYGDFFGIEDVAAVEDVLRG 306 (341)
T ss_dssp EEEEEETTEEEEEEEEEETTEEEEEEEEESCCCSSCTHHHHHHHTT
T ss_pred EeeecccCCcEEEEEEEeCCEEEEEEEECCcCCcchHHHHHHHhCC
Confidence 3445556889988877 48899999999998876 77777766653
No 46
>2k9i_A Plasmid PRN1, complete sequence; plasmid COPY control protein, ribbon helix helix protein, DNA binding protein; NMR {Sulfolobus islandicus} PDB: 3ft7_A
Probab=25.45 E-value=52 Score=20.08 Aligned_cols=34 Identities=15% Similarity=-0.036 Sum_probs=21.6
Q ss_pred cceEEEEeCcccccC-CHH------HHHHHHHHHHHHHHHH
Q 029494 132 QQPVRTEITEAAMEL-GAE------KLSLLVTEAYKDAHQK 165 (192)
Q Consensus 132 gev~~V~Idp~~l~~-D~E------~LedLI~aAvNdA~~K 165 (192)
...+.|.|++++++. +.- ..+++|..|+.+.+++
T Consensus 9 ~~~i~vrl~~el~~~l~~~a~~~g~s~s~~ir~ai~~~l~~ 49 (55)
T 2k9i_A 9 GIKLGVYIPQEWHDRLMEIAKEKNLTLSDVCRLAIKEYLDN 49 (55)
T ss_dssp CEEEEEEECHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHH
T ss_pred cceEEEEcCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHH
Confidence 346789999999863 211 3566666666665543
No 47
>3kij_A Probable glutathione peroxidase 8; human PDI-peroxidase, membrane, oxidoreductase, transmembrane; 1.80A {Homo sapiens} SCOP: c.47.1.0 PDB: 3cyn_A
Probab=24.69 E-value=1.2e+02 Score=22.45 Aligned_cols=38 Identities=16% Similarity=0.010 Sum_probs=26.1
Q ss_pred EEEEecCcceEEEEeCcccccCCHHHHHHHHHHHHHHHHHHH
Q 029494 125 KVTLSGNQQPVRTEITEAAMELGAEKLSLLVTEAYKDAHQKS 166 (192)
Q Consensus 125 kVtvnG~gev~~V~Idp~~l~~D~E~LedLI~aAvNdA~~Ka 166 (192)
++.++.+|+|+...... .+.+.|++.|.+.+++++++.
T Consensus 139 ~~lid~~G~i~~~~~g~----~~~~~l~~~i~~lL~~~~~~~ 176 (180)
T 3kij_A 139 KYLVNPEGQVVKFWRPE----EPIEVIRPDIAALVRQVIIKK 176 (180)
T ss_dssp EEEECTTSCEEEEECTT----CCGGGTHHHHHHHHHHHHHHH
T ss_pred EEEECCCCCEEEEECCC----CCHHHHHHHHHHHHHHHhccC
Confidence 68999999999875432 245566666666666666543
No 48
>3b4t_A Ribonuclease PH; RNAse, tRNA nucleotidyltransferase, RPHA, STRU genomics, TBSGC; 2.10A {Mycobacterium tuberculosis}
Probab=24.61 E-value=2.8e+02 Score=22.50 Aligned_cols=55 Identities=13% Similarity=0.082 Sum_probs=33.8
Q ss_pred CCeEEEEEecCcceEEEEeCcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 029494 121 GELIKVTLSGNQQPVRTEITEAAMELGAEKLSLLVTEAYKDAHQKSVLAMKERMSD 176 (192)
Q Consensus 121 gGlVkVtvnG~gev~~V~Idp~~l~~D~E~LedLI~aAvNdA~~Ka~e~~~e~m~~ 176 (192)
+..++|.++.+++|..|+-+-..-.-+.+.|.++|..|...+ ++..+.+++.+.+
T Consensus 190 ~~~l~va~~~~g~i~~i~~~g~~~~~~~~~l~~~l~~A~~~~-~~i~~~~~~~l~~ 244 (262)
T 3b4t_A 190 EVDMNVVATDTGTLVEIQGTGEGATFARSTLDKLLDMALGAC-DTLFAAQRDALAL 244 (262)
T ss_dssp SEEEEEEEETTSCEEEEEECSSCCCBCHHHHHHHHHHHHHHH-HHHHHHHHHHHTS
T ss_pred CceEEEEEcCCCCEEEEEeeCCCCCcCHHHHHHHHHHHHHHH-HHHHHHHHHHHhc
Confidence 456788888889999999875311126777777766665444 3333444444443
No 49
>2ia9_A Putative septation protein spovg; APC85465, bacillus subtilis subsp. subtilis STR. 168, structural genomics, PSI-2; 3.00A {Bacillus subtilis} SCOP: d.366.1.1
Probab=24.55 E-value=51 Score=24.35 Aligned_cols=48 Identities=13% Similarity=0.134 Sum_probs=31.2
Q ss_pred CeEEEEEecCcceEEEEeCc-----------------c---cccC-C---HHHHHHHHHHHHHHHHHHHHHH
Q 029494 122 ELIKVTLSGNQQPVRTEITE-----------------A---AMEL-G---AEKLSLLVTEAYKDAHQKSVLA 169 (192)
Q Consensus 122 GlVkVtvnG~gev~~V~Idp-----------------~---~l~~-D---~E~LedLI~aAvNdA~~Ka~e~ 169 (192)
+.++||+++...|.+|+|=+ + +..| + .+.|++.|+.|++++.++-.+.
T Consensus 22 A~aSVt~dd~fvI~dIkVieg~~GlFVaMPSrk~~~Gey~DI~hPit~e~Re~i~~aVl~aY~~~~~~~~~~ 93 (100)
T 2ia9_A 22 AIASITLDHEFVVHDIRVIDGNNGLFVAMPSKRTPDGEFRDITHPINSSTRGKIQDAVLNEYHRLGDTEALE 93 (100)
T ss_dssp EEEEEEETTTEEEEEEEEEEETTEEEEECCEEECTTSCEEESEEESSHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEEEECCEEEEeeEEEEECCCceEEECCCcCCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHhhhhHH
Confidence 34678888888887777621 1 1222 2 4578888888888887665444
No 50
>3b0b_C CENP-X, centromere protein X; histone fold, DNA binding, DNA, nucleus, DNA binding protein; 2.15A {Gallus gallus} PDB: 3vh5_D 3vh6_D
Probab=23.94 E-value=46 Score=23.63 Aligned_cols=32 Identities=34% Similarity=0.369 Sum_probs=26.8
Q ss_pred EEEeCcccccCCHHHHHHHHHHHHHHHHHHHH
Q 029494 136 RTEITEAAMELGAEKLSLLVTEAYKDAHQKSV 167 (192)
Q Consensus 136 ~V~Idp~~l~~D~E~LedLI~aAvNdA~~Ka~ 167 (192)
+.+|+++++..-.+.|.-.|.+|+.+|...++
T Consensus 26 ktrI~~dAl~l~aeyl~iFV~EAv~RA~~~a~ 57 (81)
T 3b0b_C 26 RTRVNGDALLLMAELLKVFVREAAARAARQAQ 57 (81)
T ss_dssp TCEECHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45889999977888899999999999888764
No 51
>2nn6_C Exosome complex exonuclease RRP43; RNA, exosome, PM/SCL, phosphorolytic, hydrolase/transferase complex; 3.35A {Homo sapiens} SCOP: d.14.1.4 d.101.1.1
Probab=21.46 E-value=2.7e+02 Score=22.69 Aligned_cols=41 Identities=7% Similarity=-0.031 Sum_probs=27.3
Q ss_pred CCCeEEEEEecCcceEEEEeCcccccC-CHHHHHHHHHHHHHHH
Q 029494 120 EGELIKVTLSGNQQPVRTEITEAAMEL-GAEKLSLLVTEAYKDA 162 (192)
Q Consensus 120 ggGlVkVtvnG~gev~~V~Idp~~l~~-D~E~LedLI~aAvNdA 162 (192)
.++.++|.++.+++|..|+-+- -.. +.+.|.++|..|...+
T Consensus 220 ~~~~l~va~~~~g~i~~v~~~g--~~~~~~~~l~~~l~~a~~~~ 261 (278)
T 2nn6_C 220 ATGTLTIVMDEEGKLCCLHKPG--GSGLTGAKLQDCMSRAVTRH 261 (278)
T ss_dssp CSEEEEEEECTTCCEEEEEESC--CSCCCHHHHHHHHHHHHHHH
T ss_pred cCceEEEEEcCCCcEEEEEccC--CCCCCHHHHHHHHHHHHHHH
Confidence 3567889999999999999865 112 6666665555554433
No 52
>1wxv_A BAG-family molecular chaperone regulator-1; structural genomics, apoptosis, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=21.07 E-value=1.6e+02 Score=19.81 Aligned_cols=26 Identities=15% Similarity=0.207 Sum_probs=20.4
Q ss_pred EEECCCeEEEEEecCcceEEEEeCcc
Q 029494 117 GYCEGELIKVTLSGNQQPVRTEITEA 142 (192)
Q Consensus 117 gsSggGlVkVtvnG~gev~~V~Idp~ 142 (192)
|++....++|+|.-.++...|+++++
T Consensus 1 ~~~~~~~~~v~Vk~~~~~~~i~v~~~ 26 (92)
T 1wxv_A 1 GSSGSSGLTVTVTHSNEKHDLHVTSQ 26 (92)
T ss_dssp CCCCCSSEEEEEECSSSEEEEEECCC
T ss_pred CCCCCCeEEEEEEECCEEEEEEECCC
Confidence 35566789999987788888999885
No 53
>4dra_E Centromere protein X; DNA binding complex, DNA damage repair, histone-fold, DNA BI protein; 2.41A {Homo sapiens} PDB: 4drb_J
Probab=20.83 E-value=57 Score=23.37 Aligned_cols=31 Identities=26% Similarity=0.328 Sum_probs=26.3
Q ss_pred EEeCcccccCCHHHHHHHHHHHHHHHHHHHH
Q 029494 137 TEITEAAMELGAEKLSLLVTEAYKDAHQKSV 167 (192)
Q Consensus 137 V~Idp~~l~~D~E~LedLI~aAvNdA~~Ka~ 167 (192)
.+|+++++..-.+.|.-.|.+|+-+|...++
T Consensus 31 TkIs~dAl~l~aeyl~iFV~EAv~RA~~~a~ 61 (84)
T 4dra_E 31 TKVSGDALQLMVELLKVFVVEAAVRGVRQAQ 61 (84)
T ss_dssp CEECHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6788888877888888999999999888776
No 54
>4gqc_A Thiol peroxidase, peroxiredoxin Q; CXXXXC motif, fully folded, locally unfolded, peroxide, DTT, structural genomics, riken; 2.00A {Aeropyrum pernix} PDB: 2cx3_A 2cx4_A 4gqf_A
Probab=20.37 E-value=2.1e+02 Score=21.13 Aligned_cols=26 Identities=4% Similarity=0.036 Sum_probs=21.4
Q ss_pred EEEEecCcceEEEEeCcccccC-CHHH
Q 029494 125 KVTLSGNQQPVRTEITEAAMEL-GAEK 150 (192)
Q Consensus 125 kVtvnG~gev~~V~Idp~~l~~-D~E~ 150 (192)
++.++.+|.|+-+.+.+..... +.+.
T Consensus 124 tflID~~G~I~~~~~~~~~~~~~~~~e 150 (164)
T 4gqc_A 124 VFIVKPDGTVAYKWVTDNPLNEPDYDE 150 (164)
T ss_dssp EEEECTTSBEEEEEECSCTTCCCCHHH
T ss_pred EEEECCCCEEEEEEEeCCCCCCCCHHH
Confidence 6889999999999999887764 6543
Done!