BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 029495
(192 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|15222202|ref|NP_172164.1| RNA polymerase Rpb7 N-terminal domain-containing protein
[Arabidopsis thaliana]
gi|7523702|gb|AAF63141.1|AC011001_11 hypothetical protein [Arabidopsis thaliana]
gi|17529108|gb|AAL38764.1| putative RNA polymerase [Arabidopsis thaliana]
gi|23296904|gb|AAN13199.1| putative RNA polymerase [Arabidopsis thaliana]
gi|332189917|gb|AEE28038.1| RNA polymerase Rpb7 N-terminal domain-containing protein
[Arabidopsis thaliana]
Length = 204
Score = 286 bits (732), Expect = 3e-75, Method: Compositional matrix adjust.
Identities = 131/194 (67%), Positives = 167/194 (86%), Gaps = 2/194 (1%)
Query: 1 MFYLSKIEHTLRLPPHLLRLPLNEAIKLELENVFLDKVIANLGLCISIYDIKEIEGGFVY 60
MFYLS++EH+LR+PPHLL LPL +AIK L+NVFLDKV+A+LGLC+SIYDIK +EGGFV
Sbjct: 1 MFYLSELEHSLRVPPHLLNLPLEDAIKSVLQNVFLDKVLADLGLCVSIYDIKSVEGGFVL 60
Query: 61 PGEGASTHTVKFRLVVFRPFVGEIIAAKLKESDANGLRLSLGFFEDIYVPSHLLPSPSRS 120
PG+GA+T+ V R+VVFRPFVGE+IAAK KESDANGLRL+LGFF+DIYVP+ L+P P+R
Sbjct: 61 PGDGAATYKVGLRIVVFRPFVGEVIAAKFKESDANGLRLTLGFFDDIYVPAPLMPKPNRC 120
Query: 121 EPDPYGRYEVKWIWEFGDTK--YVIDGLDEIKFRVLSVNYPSIPIEQAEGSKPFAPMVIN 178
EPDPY R ++ W+WE+G+ K Y++D +IKFRV S++YPS+P E+AE +KPFAPMV+
Sbjct: 121 EPDPYNRKQMIWVWEYGEPKEDYIVDDACQIKFRVESISYPSVPTERAEDAKPFAPMVVT 180
Query: 179 GSIDYDGLGPVSWW 192
G++D DGLGPVSWW
Sbjct: 181 GNMDDDGLGPVSWW 194
>gi|297843474|ref|XP_002889618.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
gi|297335460|gb|EFH65877.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
Length = 204
Score = 284 bits (726), Expect = 1e-74, Method: Compositional matrix adjust.
Identities = 130/194 (67%), Positives = 167/194 (86%), Gaps = 2/194 (1%)
Query: 1 MFYLSKIEHTLRLPPHLLRLPLNEAIKLELENVFLDKVIANLGLCISIYDIKEIEGGFVY 60
MFYLS++EH+LR+PPHLL LPL +AIK L+NVFLDKV+A+LGLC+S+YDIK IEGGFV
Sbjct: 1 MFYLSELEHSLRVPPHLLNLPLEDAIKSVLQNVFLDKVLADLGLCVSVYDIKSIEGGFVL 60
Query: 61 PGEGASTHTVKFRLVVFRPFVGEIIAAKLKESDANGLRLSLGFFEDIYVPSHLLPSPSRS 120
PG+GA+T+ V FR+VVFRPFVGE+IAAK KESD+NGLRL+LGFF+DIYVP+ L+P P+R
Sbjct: 61 PGDGAATYKVGFRIVVFRPFVGEVIAAKFKESDSNGLRLTLGFFDDIYVPAPLMPKPNRC 120
Query: 121 EPDPYGRYEVKWIWEFGD--TKYVIDGLDEIKFRVLSVNYPSIPIEQAEGSKPFAPMVIN 178
EPDPY R ++ W+WE+G+ ++ID +IKFRV S++YPS+P E+AE +KPFAPMV+
Sbjct: 121 EPDPYNRKQMIWVWEYGEPLEDFIIDDSCQIKFRVESISYPSVPTERAEDAKPFAPMVVT 180
Query: 179 GSIDYDGLGPVSWW 192
G++D DGLGPVSWW
Sbjct: 181 GNMDEDGLGPVSWW 194
>gi|225437229|ref|XP_002281971.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC8 [Vitis
vinifera]
gi|297735498|emb|CBI17938.3| unnamed protein product [Vitis vinifera]
Length = 192
Score = 275 bits (704), Expect = 6e-72, Method: Compositional matrix adjust.
Identities = 143/192 (74%), Positives = 171/192 (89%)
Query: 1 MFYLSKIEHTLRLPPHLLRLPLNEAIKLELENVFLDKVIANLGLCISIYDIKEIEGGFVY 60
MFYLS IEHTLRLPPHLL LPLNEAIK ELE++FLDKVIANLGLCIS+YDI+ I+GGFV+
Sbjct: 1 MFYLSLIEHTLRLPPHLLDLPLNEAIKGELESLFLDKVIANLGLCISVYDIRSIDGGFVF 60
Query: 61 PGEGASTHTVKFRLVVFRPFVGEIIAAKLKESDANGLRLSLGFFEDIYVPSHLLPSPSRS 120
PG+GAST+TV+FRLV+FRPFVGEII AKLKESDANGLRLSLGFF+DIY+P HL+P+P
Sbjct: 61 PGDGASTYTVEFRLVMFRPFVGEIITAKLKESDANGLRLSLGFFDDIYIPVHLMPNPCHC 120
Query: 121 EPDPYGRYEVKWIWEFGDTKYVIDGLDEIKFRVLSVNYPSIPIEQAEGSKPFAPMVINGS 180
EP+P + +V WIW++ + K+ IDG+DEI+F+V SV+YP IP+EQ + SKPFAPMVI GS
Sbjct: 121 EPNPEKKGQVIWIWDYQEQKFPIDGIDEIRFQVQSVSYPPIPVEQPKESKPFAPMVIMGS 180
Query: 181 IDYDGLGPVSWW 192
+DYDGLGPVSWW
Sbjct: 181 LDYDGLGPVSWW 192
>gi|359479790|ref|XP_002271507.2| PREDICTED: DNA-directed RNA polymerase III subunit RPC8-like [Vitis
vinifera]
gi|296086693|emb|CBI32328.3| unnamed protein product [Vitis vinifera]
Length = 192
Score = 275 bits (702), Expect = 8e-72, Method: Compositional matrix adjust.
Identities = 141/192 (73%), Positives = 171/192 (89%)
Query: 1 MFYLSKIEHTLRLPPHLLRLPLNEAIKLELENVFLDKVIANLGLCISIYDIKEIEGGFVY 60
MF+LS IEHTLRLPPHLL LPLNEAIK ELE++FLDKV+ANLGLCIS+YDI+ I+GGFV+
Sbjct: 1 MFFLSLIEHTLRLPPHLLDLPLNEAIKGELESLFLDKVLANLGLCISVYDIRSIDGGFVF 60
Query: 61 PGEGASTHTVKFRLVVFRPFVGEIIAAKLKESDANGLRLSLGFFEDIYVPSHLLPSPSRS 120
PG+GAST+TV+FRLV+FRPFVGEII AKLKESDANGL+LSLGFF+DIY+P HL+P+P
Sbjct: 61 PGDGASTYTVEFRLVMFRPFVGEIITAKLKESDANGLQLSLGFFDDIYIPVHLMPNPCHC 120
Query: 121 EPDPYGRYEVKWIWEFGDTKYVIDGLDEIKFRVLSVNYPSIPIEQAEGSKPFAPMVINGS 180
EPDP + +V WIW++ + K+ IDGLDEI+F+V SV+YP IP+EQ + SKPFAPM+I GS
Sbjct: 121 EPDPENKSQVIWIWDYQEQKFPIDGLDEIRFQVQSVSYPPIPVEQPKESKPFAPMMIMGS 180
Query: 181 IDYDGLGPVSWW 192
+DYDGLGPVSWW
Sbjct: 181 LDYDGLGPVSWW 192
>gi|42571371|ref|NP_973776.1| RNA polymerase Rpb7 N-terminal domain-containing protein
[Arabidopsis thaliana]
gi|332189916|gb|AEE28037.1| RNA polymerase Rpb7 N-terminal domain-containing protein
[Arabidopsis thaliana]
Length = 189
Score = 262 bits (670), Expect = 5e-68, Method: Compositional matrix adjust.
Identities = 121/182 (66%), Positives = 155/182 (85%), Gaps = 2/182 (1%)
Query: 1 MFYLSKIEHTLRLPPHLLRLPLNEAIKLELENVFLDKVIANLGLCISIYDIKEIEGGFVY 60
MFYLS++EH+LR+PPHLL LPL +AIK L+NVFLDKV+A+LGLC+SIYDIK +EGGFV
Sbjct: 1 MFYLSELEHSLRVPPHLLNLPLEDAIKSVLQNVFLDKVLADLGLCVSIYDIKSVEGGFVL 60
Query: 61 PGEGASTHTVKFRLVVFRPFVGEIIAAKLKESDANGLRLSLGFFEDIYVPSHLLPSPSRS 120
PG+GA+T+ V R+VVFRPFVGE+IAAK KESDANGLRL+LGFF+DIYVP+ L+P P+R
Sbjct: 61 PGDGAATYKVGLRIVVFRPFVGEVIAAKFKESDANGLRLTLGFFDDIYVPAPLMPKPNRC 120
Query: 121 EPDPYGRYEVKWIWEFGDTK--YVIDGLDEIKFRVLSVNYPSIPIEQAEGSKPFAPMVIN 178
EPDPY R ++ W+WE+G+ K Y++D +IKFRV S++YPS+P E+AE +KPFAPMV+
Sbjct: 121 EPDPYNRKQMIWVWEYGEPKEDYIVDDACQIKFRVESISYPSVPTERAEDAKPFAPMVVT 180
Query: 179 GS 180
S
Sbjct: 181 VS 182
>gi|255559937|ref|XP_002520987.1| DNA-directed RNA polymerase III 25 kD polypeptide, putative
[Ricinus communis]
gi|223539824|gb|EEF41404.1| DNA-directed RNA polymerase III 25 kD polypeptide, putative
[Ricinus communis]
Length = 194
Score = 259 bits (663), Expect = 3e-67, Method: Compositional matrix adjust.
Identities = 139/196 (70%), Positives = 163/196 (83%), Gaps = 6/196 (3%)
Query: 1 MFYLSKIEHTLRLPPHLLRLPLNEAIKLELENVFLDKVIANLGLCISIYDIKEIEGGFVY 60
MFYLS+IEHTLRLPP LL LPL +A+K ELE +FLDKVIANLGLCIS+YD+ I+GGF++
Sbjct: 1 MFYLSEIEHTLRLPPSLLSLPLQDAVKKELEIIFLDKVIANLGLCISVYDVTHIDGGFIF 60
Query: 61 PGEGASTHTVKFRLVVFRPFVGEIIAAKLKESDANGLRLSLGFFEDIYVPSHLLPSPSRS 120
PG+GAST+TV+FR+VVFRPFVGEII AKLKES+ +GLRLSLGFF+DIY+PSH LP PS S
Sbjct: 61 PGDGASTYTVRFRIVVFRPFVGEIIVAKLKESNNDGLRLSLGFFDDIYIPSHRLPKPSYS 120
Query: 121 EPDPYGRYEVKWIWEF----GDTKYVIDGLDEIKFRVLSVNYPSIPIEQAEGSKPFAPMV 176
+ DP RY+ WIWEF ++ IDGLDEIKFRV SV YP +P+EQ E KPFAPMV
Sbjct: 121 QQDPENRYQAIWIWEFVSEDNKMEFNIDGLDEIKFRVDSVKYPPVPLEQQE--KPFAPMV 178
Query: 177 INGSIDYDGLGPVSWW 192
I GSID +GLGPVSWW
Sbjct: 179 ITGSIDDEGLGPVSWW 194
>gi|357517541|ref|XP_003629059.1| DNA-directed RNA polymerase III subunit RPC8 [Medicago truncatula]
gi|355523081|gb|AET03535.1| DNA-directed RNA polymerase III subunit RPC8 [Medicago truncatula]
Length = 220
Score = 236 bits (601), Expect = 4e-60, Method: Compositional matrix adjust.
Identities = 118/195 (60%), Positives = 150/195 (76%), Gaps = 6/195 (3%)
Query: 1 MFYLSKIEHTLRLPPHLLRLPLNEAIKLELENVFLDKVIANLGLCISIYDIKEIEGGFVY 60
MFYLSKIEH LPPHLL P+ EAI+ ELE +FLDKVI LGLCIS+YDI IEGG ++
Sbjct: 28 MFYLSKIEHKFALPPHLLARPIREAIQSELERLFLDKVIQKLGLCISVYDITSIEGGSIF 87
Query: 61 PGEGASTHTVKFRLVVFRPFVGEIIAAKLKESDANGLRLSLGFFEDIYVPSHLLPSPSRS 120
PG GA T+ V F L++FRPF GEII+AK+ DA+G+RLSLGFFEDIY+P+H +P PS
Sbjct: 88 PGAGAPTYQVVFNLIMFRPFPGEIISAKVMSLDADGVRLSLGFFEDIYIPTHHMPYPSYY 147
Query: 121 EPDPYGRYEVKWIWEFGDT--KYVIDGLDE-IKFRVLSVNYPSIPIEQAEGSKPFAPMVI 177
R KW WE+G+ ++ I+ +E I+F+VLSV+YP+IP+EQA+ SKPFAPMV+
Sbjct: 148 ISKNNTR---KWTWEYGEETDEFNIEISNEVIRFQVLSVSYPTIPVEQAKESKPFAPMVV 204
Query: 178 NGSIDYDGLGPVSWW 192
NGS+ ++GLGPVSWW
Sbjct: 205 NGSLYHEGLGPVSWW 219
>gi|449436395|ref|XP_004135978.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC8-like
[Cucumis sativus]
gi|449523449|ref|XP_004168736.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC8-like
[Cucumis sativus]
Length = 226
Score = 235 bits (600), Expect = 5e-60, Method: Compositional matrix adjust.
Identities = 115/208 (55%), Positives = 149/208 (71%), Gaps = 16/208 (7%)
Query: 1 MFYLSKIEHTLRLPPHLLRLPLNEAIKLELENVFLDKVIANLGLCISIYDIKEIEGGFVY 60
MFYLS+IEHTLR+PP LL LP+ +AIK ELE +F+DKV+ANLGLCIS+YDI+ ++GGF++
Sbjct: 1 MFYLSRIEHTLRVPPSLLNLPILDAIKGELEKLFIDKVVANLGLCISVYDIRSVDGGFIF 60
Query: 61 PGEGASTHTVKFRLVVFRPFVGEIIAAKLKESDANGLRLSLGFFEDIYVPSHLLPSPSRS 120
P +GA+T+ V F L+VFRPF GE+I K++ES+ NGLR+SLGFFEDIYVP L+PS S
Sbjct: 61 PSDGAATYKVVFTLIVFRPFTGEVIIGKVQESNENGLRISLGFFEDIYVPVELMPSGSEF 120
Query: 121 EPDPYGRYEVKWIWEFGDTKYVIDGLDEIKFRVLSVNYPSIPIEQAEGS----------- 169
PD +W+W + + + I DEIKF+V S+ YP+I +EQ + S
Sbjct: 121 TPDENNGGRCRWVWIYNEVPFDIYESDEIKFKVHSIEYPAILVEQPKESNSKFPMEEKPK 180
Query: 170 -----KPFAPMVINGSIDYDGLGPVSWW 192
KPFAPMVI S+D DGLGPVSWW
Sbjct: 181 ESINVKPFAPMVITASLDQDGLGPVSWW 208
>gi|363807592|ref|NP_001241897.1| uncharacterized protein LOC100800770 [Glycine max]
gi|255644932|gb|ACU22966.1| unknown [Glycine max]
Length = 214
Score = 231 bits (589), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 114/207 (55%), Positives = 148/207 (71%), Gaps = 16/207 (7%)
Query: 1 MFYLSKIEHTLRLPPHLLRLPLNEAIKLELENVFLDKVIANLGLCISIYDIKEIEGGFVY 60
MFYLSKIEH L LPP LP+ EAI +ELE +FLDKVIANLGLCIS+YDI+ I+GGF++
Sbjct: 1 MFYLSKIEHKLPLPPSRFVLPIREAIHMELEKLFLDKVIANLGLCISVYDIRSIDGGFIF 60
Query: 61 PGEGASTHTVKFRLVVFRPFVGEIIAAKLKESDANGLRLSLGFFEDIYVPSHLLPSPSR- 119
PG+GA T+TV F L++FRPF EII A+L SDA+GLRL++GFF+DIY+P+ LP P+
Sbjct: 61 PGDGAPTYTVVFNLIMFRPFEKEIITARLLSSDADGLRLTIGFFDDIYIPASRLPDPNHF 120
Query: 120 --------------SEPDPYGRYEVKWIWEFGDTKYVIDGLDEIKFRVLSVNYPSIPIEQ 165
S + + V W W++ + +Y I D KFRV +V+YP IP+EQ
Sbjct: 121 VETEQKKRVFSGQESTTNSSSKKGV-WYWDYNEQEYPIQDTDVTKFRVTNVSYPQIPVEQ 179
Query: 166 AEGSKPFAPMVINGSIDYDGLGPVSWW 192
+ SKPFAPM+I+G++D DGLGPVSWW
Sbjct: 180 PKESKPFAPMLISGAMDDDGLGPVSWW 206
>gi|356572779|ref|XP_003554543.1| PREDICTED: DNA-directed RNA polymerase III subunit rpc8-like
[Glycine max]
Length = 212
Score = 229 bits (585), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 115/206 (55%), Positives = 150/206 (72%), Gaps = 16/206 (7%)
Query: 1 MFYLSKIEHTLRLPPHLLRLPLNEAIKLELENVFLDKVIANLGLCISIYDIKEIEGGFVY 60
MFYLSKIEH L LPP L LP+ EAI +ELE +FLDKVIANLGLCIS+YDI+ I+GGF++
Sbjct: 1 MFYLSKIEHELPLPPSRLVLPIREAIHMELEKLFLDKVIANLGLCISVYDIRSIDGGFIF 60
Query: 61 PGEGASTHTVKFRLVVFRPFVGEIIAAKLKESDANGLRLSLGFFEDIYVPSHLLPSPSR- 119
PG+GA T+TV F L++FRPF EII A+L SDA+GLRL++GF++DIY+P+ LP P+
Sbjct: 61 PGDGAPTYTVVFNLIMFRPFEKEIITARLLSSDADGLRLTIGFYDDIYIPASRLPDPNHF 120
Query: 120 SEPDPYGRYEV-------------KWIWEFGDTKYVIDGLDEIKFRVLSVNYPSIPIEQA 166
E +P R W W++ + +Y I D IKFRV +V+YP IP+EQ
Sbjct: 121 VETEPKKRVSSGQESTANPSSKKGMWYWDYDEQEYPI--TDVIKFRVTNVSYPQIPVEQP 178
Query: 167 EGSKPFAPMVINGSIDYDGLGPVSWW 192
+ SKPFAPM+++G+ID DGLGP+SWW
Sbjct: 179 KESKPFAPMLVSGAIDDDGLGPISWW 204
>gi|224062241|ref|XP_002300802.1| predicted protein [Populus trichocarpa]
gi|222842528|gb|EEE80075.1| predicted protein [Populus trichocarpa]
Length = 186
Score = 226 bits (575), Expect = 5e-57, Method: Compositional matrix adjust.
Identities = 117/177 (66%), Positives = 146/177 (82%), Gaps = 2/177 (1%)
Query: 1 MFYLSKIEHTLRLPPHLLRLPLNEAIKLELENVFLDKVIANLGLCISIYDIKEIEGGFVY 60
MFYLS IEH + LPP LL LPL +AIK EL+N+FLDKVI+ LGLCISIYDI++I+GGF+
Sbjct: 1 MFYLSLIEHKMLLPPRLLNLPLQDAIKEELQNIFLDKVISKLGLCISIYDIRKIDGGFIS 60
Query: 61 PGEGASTHTVKFRLVVFRPFVGEIIAAKLKESDANGLRLSLGFFEDIYVPSHLLPSPSRS 120
PGEGAST+TV+FR++VFRPFVGEII+AKLKES A+GL LSLGFF+DI +P+ L+ PSR
Sbjct: 61 PGEGASTYTVEFRMIVFRPFVGEIISAKLKESTADGLHLSLGFFDDINIPAGLIQKPSRH 120
Query: 121 EPDPYGRYEVKWIWEFGDTKYVIDGLDEIKFRVLSVNYPSIPIEQAEGSKPFAPMVI 177
PDP RY+V W+WEF ++ +DG+DEI+F+V+SV YP PIEQ +PFAPMVI
Sbjct: 121 VPDPENRYKVLWVWEFNGEEFFVDGIDEIRFKVISVTYPPTPIEQQ--GEPFAPMVI 175
>gi|302814541|ref|XP_002988954.1| hypothetical protein SELMODRAFT_128885 [Selaginella moellendorffii]
gi|300143291|gb|EFJ09983.1| hypothetical protein SELMODRAFT_128885 [Selaginella moellendorffii]
Length = 187
Score = 221 bits (564), Expect = 8e-56, Method: Compositional matrix adjust.
Identities = 107/192 (55%), Positives = 141/192 (73%), Gaps = 5/192 (2%)
Query: 1 MFYLSKIEHTLRLPPHLLRLPLNEAIKLELENVFLDKVIANLGLCISIYDIKEIEGGFVY 60
MF LSK+ TLR+PP L LPL +AI LE+ +FLDKV+ +LGLC+S+YDI+ IEGGFV+
Sbjct: 1 MFVLSKLRDTLRIPPANLVLPLLDAITLEIHRLFLDKVVKDLGLCVSLYDIQSIEGGFVF 60
Query: 61 PGEGASTHTVKFRLVVFRPFVGEIIAAKLKESDANGLRLSLGFFEDIYVPSHLLPSPSRS 120
PG+GA T+TV+F+LV+FRPF GEI+ AKLK+ D NGL LS+GFFEDI VP H L PS+
Sbjct: 61 PGDGAPTYTVEFQLVMFRPFPGEILVAKLKKCDKNGLVLSMGFFEDIIVPHHQLQQPSK- 119
Query: 121 EPDPYGRYEVKWIWEFGDTKYVIDGLDEIKFRVLSVNYPSIPIEQAEGSKPFAPMVINGS 180
+ E W+W + + + +D +E++FRVL V YP IP+EQ ++PFAPM + G
Sbjct: 120 ----FDENEKLWVWNYQENEMFMDLEEEVRFRVLKVRYPPIPLEQERDAQPFAPMEVIGD 175
Query: 181 IDYDGLGPVSWW 192
I+ DGLG VSWW
Sbjct: 176 INSDGLGLVSWW 187
>gi|359479579|ref|XP_002275475.2| PREDICTED: DNA-directed RNA polymerase III subunit RPC8-like [Vitis
vinifera]
Length = 177
Score = 219 bits (557), Expect = 5e-55, Method: Compositional matrix adjust.
Identities = 109/192 (56%), Positives = 141/192 (73%), Gaps = 15/192 (7%)
Query: 1 MFYLSKIEHTLRLPPHLLRLPLNEAIKLELENVFLDKVIANLGLCISIYDIKEIEGGFVY 60
MF+LS IEHTLRLPPHLL L L++ I+ ELE+ FLDKVIA+LGLCIS+YDI+ I+G F +
Sbjct: 1 MFFLSLIEHTLRLPPHLLDLSLDKTIQGELESQFLDKVIADLGLCISVYDIRSIDGDFAF 60
Query: 61 PGEGASTHTVKFRLVVFRPFVGEIIAAKLKESDANGLRLSLGFFEDIYVPSHLLPSPSRS 120
P +GAST+T L P +G + + LSLGFFED+Y HL+P+PSR
Sbjct: 61 PADGASTYT----LWALVPDLGNAVES-----------LSLGFFEDVYRLVHLMPNPSRC 105
Query: 121 EPDPYGRYEVKWIWEFGDTKYVIDGLDEIKFRVLSVNYPSIPIEQAEGSKPFAPMVINGS 180
EP+PY R +V WIW+ + K+ IDG+D+I+F+V SV+Y +P+EQ + SKPFAPMVI GS
Sbjct: 106 EPNPYSRSQVIWIWDNQEQKFPIDGMDKIRFQVQSVSYSPVPVEQPKESKPFAPMVILGS 165
Query: 181 IDYDGLGPVSWW 192
+DYDGL PVSWW
Sbjct: 166 LDYDGLSPVSWW 177
>gi|326529803|dbj|BAK08181.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 210
Score = 211 bits (538), Expect = 8e-53, Method: Compositional matrix adjust.
Identities = 107/192 (55%), Positives = 141/192 (73%), Gaps = 5/192 (2%)
Query: 1 MFYLSKIEHTLRLPPHLLRLPLNEAIKLELENVFLDKVIANLGLCISIYDIKEIEGGFVY 60
MF LS+IEH L +PPHLL PL +AIK ELE +FLDKV+ANLGLC+S+YDI+++EGGF++
Sbjct: 1 MFVLSQIEHNLPMPPHLLNRPLVDAIKSELERLFLDKVVANLGLCVSVYDIRKVEGGFIF 60
Query: 61 PGEGASTHTVKFRLVVFRPFVGEIIAAKLKESDANGLRLSLGFFEDIYVPSHLLPSPSRS 120
PGEG ST+TV FRL++FRPF+GE++ K+ D GL++SL FF DI +P HL+ +
Sbjct: 61 PGEGCSTYTVSFRLLMFRPFIGEVLVGKISGYDEKGLQVSLDFFSDICIPGHLMQFGTVR 120
Query: 121 EPDPYGRYEVKWIWEFGDTKYVIDGLDEIKFRVLSVNYPSIPIEQAEGSKPFAPMVINGS 180
D GR+ +K E GD + +D DEI+F V S+ YP IP+EQ E +PFAPM INGS
Sbjct: 121 GED--GRWALK--TEDGD-ELPLDIDDEIRFLVSSIKYPPIPVEQKEDDRPFAPMQINGS 175
Query: 181 IDYDGLGPVSWW 192
I DGLG ++WW
Sbjct: 176 IKGDGLGLLAWW 187
>gi|167998266|ref|XP_001751839.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162696937|gb|EDQ83274.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 189
Score = 209 bits (531), Expect = 6e-52, Method: Compositional matrix adjust.
Identities = 99/193 (51%), Positives = 136/193 (70%), Gaps = 6/193 (3%)
Query: 1 MFYLSKIEHTLRLPPHLLRLPLNEAIKLELENVFLDKVIANLGLCISIYDIKEIEGGFVY 60
MF L++++ TL++PP L L L +AI EL N++ DKV+ +LGLC+++YDI ++EGG V+
Sbjct: 1 MFMLAELQDTLKVPPQSLSLALQDAITQELANLYFDKVLKDLGLCVTLYDISKVEGGSVF 60
Query: 61 PGEGASTHTVKFRLVVFRPFVGEIIAAKLKESDANGLRLSLG-FFEDIYVPSHLLPSPSR 119
PG+GA TV FRLV+FRPFVGE++ AKLK D GL LSLG FFEDI++P HLL PS+
Sbjct: 61 PGDGAPHFTVDFRLVMFRPFVGEVLIAKLKRCDKAGLYLSLGSFFEDIHIPEHLLQQPSK 120
Query: 120 SEPDPYGRYEVKWIWEFGDTKYVIDGLDEIKFRVLSVNYPSIPIEQAEGSKPFAPMVING 179
+ E WIW + +D ++++FRV+ V YP IPIEQ + ++PFAPM I G
Sbjct: 121 -----FDEEEKLWIWNYNGADMFMDLEEDVRFRVVQVKYPPIPIEQEKDARPFAPMAITG 175
Query: 180 SIDYDGLGPVSWW 192
I+ DGLG V+WW
Sbjct: 176 DINADGLGLVAWW 188
>gi|222637023|gb|EEE67155.1| hypothetical protein OsJ_24224 [Oryza sativa Japonica Group]
Length = 365
Score = 209 bits (531), Expect = 7e-52, Method: Compositional matrix adjust.
Identities = 106/192 (55%), Positives = 136/192 (70%), Gaps = 5/192 (2%)
Query: 1 MFYLSKIEHTLRLPPHLLRLPLNEAIKLELENVFLDKVIANLGLCISIYDIKEIEGGFVY 60
MF LS+IEH L +PPHLL PL +AIK ELE +FLDKV+ANLGLC+S+YDI+ +EGGF++
Sbjct: 164 MFVLSQIEHNLPMPPHLLSRPLVDAIKAELERLFLDKVVANLGLCVSVYDIRSVEGGFIF 223
Query: 61 PGEGASTHTVKFRLVVFRPFVGEIIAAKLKESDANGLRLSLGFFEDIYVPSHLLPSPSRS 120
PGEG ST+ V FRL++FRPFVGE++ K+ D GL +SL FF DI +P HL+ +
Sbjct: 224 PGEGCSTYKVSFRLLMFRPFVGEVLVGKISGYDEKGLHVSLDFFSDISIPGHLMQYGTAR 283
Query: 121 EPDPYGRYEVKWIWEFGDTKYVIDGLDEIKFRVLSVNYPSIPIEQAEGSKPFAPMVINGS 180
D GR+ +K E GD Y +D DEI+F V S+ YP IP+EQ E + FAPM I GS
Sbjct: 284 ALD--GRWMLK--TEDGDELY-LDLDDEIRFLVSSIKYPPIPVEQKETDRAFAPMQIIGS 338
Query: 181 IDYDGLGPVSWW 192
I DGLG ++WW
Sbjct: 339 IKGDGLGLLAWW 350
>gi|115472059|ref|NP_001059628.1| Os07g0477000 [Oryza sativa Japonica Group]
gi|29837202|dbj|BAC75582.1| putative DNA-directed RNA polymerase III subunit 22.9 kDa
polypeptide [Oryza sativa Japonica Group]
gi|113611164|dbj|BAF21542.1| Os07g0477000 [Oryza sativa Japonica Group]
gi|215765537|dbj|BAG87234.1| unnamed protein product [Oryza sativa Japonica Group]
gi|218199590|gb|EEC82017.1| hypothetical protein OsI_25976 [Oryza sativa Indica Group]
Length = 202
Score = 206 bits (525), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 106/192 (55%), Positives = 136/192 (70%), Gaps = 5/192 (2%)
Query: 1 MFYLSKIEHTLRLPPHLLRLPLNEAIKLELENVFLDKVIANLGLCISIYDIKEIEGGFVY 60
MF LS+IEH L +PPHLL PL +AIK ELE +FLDKV+ANLGLC+S+YDI+ +EGGF++
Sbjct: 1 MFVLSQIEHNLPMPPHLLSRPLVDAIKAELERLFLDKVVANLGLCVSVYDIRSVEGGFIF 60
Query: 61 PGEGASTHTVKFRLVVFRPFVGEIIAAKLKESDANGLRLSLGFFEDIYVPSHLLPSPSRS 120
PGEG ST+ V FRL++FRPFVGE++ K+ D GL +SL FF DI +P HL+ +
Sbjct: 61 PGEGCSTYKVSFRLLMFRPFVGEVLVGKISGYDEKGLHVSLDFFSDISIPGHLMQYGTAR 120
Query: 121 EPDPYGRYEVKWIWEFGDTKYVIDGLDEIKFRVLSVNYPSIPIEQAEGSKPFAPMVINGS 180
D GR+ +K E GD Y +D DEI+F V S+ YP IP+EQ E + FAPM I GS
Sbjct: 121 ALD--GRWMLK--TEDGDELY-LDLDDEIRFLVSSIKYPPIPVEQKETDRAFAPMQIIGS 175
Query: 181 IDYDGLGPVSWW 192
I DGLG ++WW
Sbjct: 176 IKGDGLGLLAWW 187
>gi|242045626|ref|XP_002460684.1| hypothetical protein SORBIDRAFT_02g033110 [Sorghum bicolor]
gi|241924061|gb|EER97205.1| hypothetical protein SORBIDRAFT_02g033110 [Sorghum bicolor]
Length = 202
Score = 199 bits (506), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 105/192 (54%), Positives = 135/192 (70%), Gaps = 5/192 (2%)
Query: 1 MFYLSKIEHTLRLPPHLLRLPLNEAIKLELENVFLDKVIANLGLCISIYDIKEIEGGFVY 60
MF LS+IEH L +PPHLL PL +AIK ELE +FLDKVIANLGLC+S+YDI+ IEGG ++
Sbjct: 1 MFALSQIEHDLPMPPHLLSRPLPDAIKAELERLFLDKVIANLGLCVSVYDIRSIEGGSIH 60
Query: 61 PGEGASTHTVKFRLVVFRPFVGEIIAAKLKESDANGLRLSLGFFEDIYVPSHLLPSPSRS 120
PG+G ST+ V FRL++F+PF GE++ ++ D GL++SL FF DI +P HL+ +
Sbjct: 61 PGQGCSTYKVSFRLLMFKPFNGEVLVGRIIGYDDKGLQVSLDFFSDISIPGHLMQFGTVR 120
Query: 121 EPDPYGRYEVKWIWEFGDTKYVIDGLDEIKFRVLSVNYPSIPIEQAEGSKPFAPMVINGS 180
PD GR+ +K E GD Y +D DEI+F V S YP IPI+Q E PFAPM I GS
Sbjct: 121 GPD--GRWMLK--TEDGDELY-LDLDDEIRFLVSSTKYPRIPIDQKEDDPPFAPMQIVGS 175
Query: 181 IDYDGLGPVSWW 192
I DGLG ++WW
Sbjct: 176 IKGDGLGLLAWW 187
>gi|357166708|ref|XP_003580811.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC8-like
[Brachypodium distachyon]
Length = 200
Score = 198 bits (503), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 105/192 (54%), Positives = 135/192 (70%), Gaps = 5/192 (2%)
Query: 1 MFYLSKIEHTLRLPPHLLRLPLNEAIKLELENVFLDKVIANLGLCISIYDIKEIEGGFVY 60
MF LS+IEH L +PPHLL PL +AIK ELE +FLDKVIANLGLC+S+YDI +EGGF++
Sbjct: 1 MFVLSQIEHNLPMPPHLLSRPLVDAIKTELERLFLDKVIANLGLCVSVYDILAVEGGFIF 60
Query: 61 PGEGASTHTVKFRLVVFRPFVGEIIAAKLKESDANGLRLSLGFFEDIYVPSHLLPSPSRS 120
PGEG ST+ V FRL++FRPF+GE++ K+ D GL++SL F DI +P HL+ +
Sbjct: 61 PGEGCSTYKVSFRLLMFRPFIGEVLVGKISGYDEKGLQVSLDFSSDICIPGHLMQYGTVR 120
Query: 121 EPDPYGRYEVKWIWEFGDTKYVIDGLDEIKFRVLSVNYPSIPIEQAEGSKPFAPMVINGS 180
D GR+ +K D + +D DEI+F V S+ YP IP+EQ E KPFAPM INGS
Sbjct: 121 GED--GRWMLK---TEDDDELYLDLDDEIRFLVASIKYPPIPVEQKEDDKPFAPMQINGS 175
Query: 181 IDYDGLGPVSWW 192
I DGLG ++WW
Sbjct: 176 IKGDGLGLLAWW 187
>gi|414886498|tpg|DAA62512.1| TPA: DNA-directed RNA polymerase III subunit polypeptide [Zea mays]
Length = 290
Score = 197 bits (501), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 105/192 (54%), Positives = 132/192 (68%), Gaps = 5/192 (2%)
Query: 1 MFYLSKIEHTLRLPPHLLRLPLNEAIKLELENVFLDKVIANLGLCISIYDIKEIEGGFVY 60
MF LS+IEH L +PPHLL PL +AIK ELE +FLDKVI LGLC+S+YDI+ IEGG ++
Sbjct: 89 MFSLSQIEHDLPMPPHLLSRPLPDAIKAELERLFLDKVITKLGLCVSVYDIRSIEGGSIH 148
Query: 61 PGEGASTHTVKFRLVVFRPFVGEIIAAKLKESDANGLRLSLGFFEDIYVPSHLLPSPSRS 120
PGEG ST+ V FRL++F+PF GEI+ ++ D GL++SL FF DI +P HL+ +
Sbjct: 149 PGEGCSTYKVSFRLLMFKPFNGEILVGRITGYDDKGLQVSLEFFSDICIPGHLMQFGTVR 208
Query: 121 EPDPYGRYEVKWIWEFGDTKYVIDGLDEIKFRVLSVNYPSIPIEQAEGSKPFAPMVINGS 180
PD GR+ +K E GD Y +D DEI+F V S YP IPI+Q E PFAPM I GS
Sbjct: 209 GPD--GRWMLK--TELGDELY-LDLDDEIRFLVSSTKYPPIPIDQNEDDPPFAPMQIVGS 263
Query: 181 IDYDGLGPVSWW 192
I DGLG + WW
Sbjct: 264 IKGDGLGLLVWW 275
>gi|238007814|gb|ACR34942.1| unknown [Zea mays]
Length = 202
Score = 197 bits (500), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 105/192 (54%), Positives = 132/192 (68%), Gaps = 5/192 (2%)
Query: 1 MFYLSKIEHTLRLPPHLLRLPLNEAIKLELENVFLDKVIANLGLCISIYDIKEIEGGFVY 60
MF LS+IEH L +PPHLL PL +AIK ELE +FLDKVI LGLC+S+YDI+ IEGG ++
Sbjct: 1 MFSLSQIEHDLPMPPHLLSRPLPDAIKAELERLFLDKVITKLGLCVSVYDIRSIEGGSIH 60
Query: 61 PGEGASTHTVKFRLVVFRPFVGEIIAAKLKESDANGLRLSLGFFEDIYVPSHLLPSPSRS 120
PGEG ST+ V FRL++F+PF GEI+ ++ D GL++SL FF DI +P HL+ +
Sbjct: 61 PGEGCSTYKVSFRLLMFKPFNGEILVGRITGYDDKGLQVSLEFFSDICIPGHLMQFGTVR 120
Query: 121 EPDPYGRYEVKWIWEFGDTKYVIDGLDEIKFRVLSVNYPSIPIEQAEGSKPFAPMVINGS 180
PD GR+ +K E GD Y +D DEI+F V S YP IPI+Q E PFAPM I GS
Sbjct: 121 GPD--GRWMLK--TELGDELY-LDLDDEIRFLVSSTKYPPIPIDQNEDDPPFAPMQIVGS 175
Query: 181 IDYDGLGPVSWW 192
I DGLG + WW
Sbjct: 176 IKGDGLGLLVWW 187
>gi|357122866|ref|XP_003563135.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC8-like
[Brachypodium distachyon]
Length = 200
Score = 196 bits (499), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 103/187 (55%), Positives = 131/187 (70%), Gaps = 5/187 (2%)
Query: 1 MFYLSKIEHTLRLPPHLLRLPLNEAIKLELENVFLDKVIANLGLCISIYDIKEIEGGFVY 60
MF LS+IEH L +PPHLL PL +AIK ELE +FLDKVI NLGLC+S+YDI +EGGF++
Sbjct: 1 MFVLSQIEHNLPMPPHLLSRPLVDAIKTELERLFLDKVITNLGLCVSVYDILAVEGGFIF 60
Query: 61 PGEGASTHTVKFRLVVFRPFVGEIIAAKLKESDANGLRLSLGFFEDIYVPSHLLPSPSRS 120
PGEG ST+ V FRL++FRPF+GE++ K+ D GL++SL FF DI +P HL+ +
Sbjct: 61 PGEGCSTYKVSFRLLMFRPFIGEVLVGKISGYDEKGLQVSLDFFSDICIPGHLMQYGTVR 120
Query: 121 EPDPYGRYEVKWIWEFGDTKYVIDGLDEIKFRVLSVNYPSIPIEQAEGSKPFAPMVINGS 180
D GR+ +K + GD Y +D DEI+F V + YP IP+EQ E KPFAPM I GS
Sbjct: 121 GED--GRWMLK--TDDGDELY-LDIDDEIRFLVSGIKYPPIPVEQKEDDKPFAPMQIIGS 175
Query: 181 IDYDGLG 187
I DGLG
Sbjct: 176 IKGDGLG 182
>gi|226496239|ref|NP_001147612.1| DNA-directed RNA polymerase III subunit 22.9 kDa polypeptide [Zea
mays]
gi|195612502|gb|ACG28081.1| DNA-directed RNA polymerase III subunit 22.9 kDa polypeptide [Zea
mays]
Length = 202
Score = 195 bits (496), Expect = 8e-48, Method: Compositional matrix adjust.
Identities = 104/192 (54%), Positives = 131/192 (68%), Gaps = 5/192 (2%)
Query: 1 MFYLSKIEHTLRLPPHLLRLPLNEAIKLELENVFLDKVIANLGLCISIYDIKEIEGGFVY 60
MF LS+IEH L +PPHLL PL + IK ELE +FLDKVI LGLC+S+YDI+ IEGG ++
Sbjct: 1 MFSLSQIEHDLPMPPHLLSRPLPDXIKAELERLFLDKVITKLGLCVSVYDIRSIEGGSIH 60
Query: 61 PGEGASTHTVKFRLVVFRPFVGEIIAAKLKESDANGLRLSLGFFEDIYVPSHLLPSPSRS 120
PGEG ST+ V FRL++F+PF GEI+ ++ D GL++SL FF DI +P HL+ +
Sbjct: 61 PGEGCSTYKVSFRLLMFKPFNGEILVGRITGYDDKGLQVSLEFFSDICIPGHLMQFGTVR 120
Query: 121 EPDPYGRYEVKWIWEFGDTKYVIDGLDEIKFRVLSVNYPSIPIEQAEGSKPFAPMVINGS 180
PD GR+ +K E GD Y +D DEI+F V S YP IPI+Q E PFAPM I GS
Sbjct: 121 GPD--GRWMLK--TELGDELY-LDLDDEIRFLVSSTKYPPIPIDQNEDDPPFAPMQIVGS 175
Query: 181 IDYDGLGPVSWW 192
I DGLG + WW
Sbjct: 176 IKGDGLGLLVWW 187
>gi|159469412|ref|XP_001692857.1| DNA-directed RNA polymerase II, 19 kDa polypeptide [Chlamydomonas
reinhardtii]
gi|158277659|gb|EDP03426.1| DNA-directed RNA polymerase II, 19 kDa polypeptide [Chlamydomonas
reinhardtii]
Length = 201
Score = 177 bits (450), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 98/205 (47%), Positives = 127/205 (61%), Gaps = 19/205 (9%)
Query: 1 MFYLSKIEHTLRL-PPHLLRLPLNEAIKLELENVFLDKVIANLGLCISIYDIKEIEGGFV 59
MF +++IE +R+ P L + PL +A+ +E F+DKVI NLGL +SIYD+ IEGGFV
Sbjct: 1 MFIITQIEDQIRVQPADLTKAPL-DAVTQVIEQRFVDKVIPNLGLVVSIYDVTNIEGGFV 59
Query: 60 YPGEGASTHTVKFRLVVFRPFVGEIIAAKLKESDANGLRLSLGFFEDIYVPSHLLPSPSR 119
YP +GA+ TV+FRLVVFRPF+GEII KLK GLR+SL FF+DI +P H L PS
Sbjct: 60 YPNDGAAFFTVQFRLVVFRPFIGEIIVGKLKSCSREGLRISLDFFDDILIPEHALQDPSF 119
Query: 120 SEPDPYGRYEVKWIWEFGDTKYVIDGLDEIKFRVLSV--NYPSIPIEQAEGS-------- 169
Y E W+W+F +D + I+FRV SV N P PI+ A +
Sbjct: 120 -----YDEAERLWVWKFDGNDMYMDLQEPIRFRVHSVKFNSPPTPIQLANATGDDKLLGT 174
Query: 170 --KPFAPMVINGSIDYDGLGPVSWW 192
KPF+PMV+ G I+ DGLG SWW
Sbjct: 175 AAKPFSPMVVVGDINGDGLGCTSWW 199
>gi|384254130|gb|EIE27604.1| DNA-directed RNA polymerase II, 19 kDa polypeptide [Coccomyxa
subellipsoidea C-169]
Length = 211
Score = 172 bits (437), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 90/205 (43%), Positives = 126/205 (61%), Gaps = 18/205 (8%)
Query: 1 MFYLSKIEHTLRLPPHLLRLPLNEAIKLELENVFLDKVIANLGLCISIYDIKEIEGGFVY 60
MF LS++E +R+ P L P +A+ +E ++LDKV+++LGL ++IYDI +I+GG +Y
Sbjct: 1 MFILSELEDKVRIEPADLGRPTVDAVTAVIEQLYLDKVVSDLGLVVTIYDILDIQGGSIY 60
Query: 61 PGEGASTHTVKFRLVVFRPFVGEIIAAKLKESDANGLRLSLGFFEDIYVPSHLLPSPSRS 120
EGA+ +TVKFRLVVFRPF+GE++ +L + D GL LSL FFEDI+VP H LP+PS
Sbjct: 61 ASEGAAHYTVKFRLVVFRPFIGEVLVGRLTKCDKTGLHLSLDFFEDIFVPEHALPAPSF- 119
Query: 121 EPDPYGRYEVKWIWEFGDTKYVIDGLDEIKFRVLSVNYPSIP----IEQAE--------- 167
+ E W W+F D ++ D I+ RV V + P + A
Sbjct: 120 ----FDEAEGLWFWKFEDQPMWLEMEDAIRLRVKGVKFRQAPNALQLRSASEPGGDMLGT 175
Query: 168 GSKPFAPMVINGSIDYDGLGPVSWW 192
+ PFAPM + G+ID DGLG VSWW
Sbjct: 176 AANPFAPMQVVGAIDEDGLGVVSWW 200
>gi|302810586|ref|XP_002986984.1| hypothetical protein SELMODRAFT_235152 [Selaginella moellendorffii]
gi|300145389|gb|EFJ12066.1| hypothetical protein SELMODRAFT_235152 [Selaginella moellendorffii]
Length = 155
Score = 171 bits (434), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 93/193 (48%), Positives = 121/193 (62%), Gaps = 39/193 (20%)
Query: 1 MFYLSKIEHTLRLPPHLLRLPLNEAIKLELENVFLDKVIANLGLCISIYDIKEIEGGFVY 60
MF LSK+ TLR+PP L LPL +AI LE+ +FLDKV+ +LGLC+S+YDI+ IEGGFV+
Sbjct: 1 MFVLSKLRDTLRIPPANLVLPLLDAITLEIHRLFLDKVVKDLGLCVSLYDIQSIEGGFVF 60
Query: 61 PGEGASTHTVKFRLVVFRPFVGEIIAAKLKESDANGLRLSL-GFFEDIYVPSHLLPSPSR 119
PG+GA T+TV+F+LV+FRPF GEI+ AKLK+ D NGL ++ GFF
Sbjct: 61 PGDGAPTYTVEFQLVMFRPFPGEILVAKLKKCDKNGLVCNVDGFFR-------------- 106
Query: 120 SEPDPYGRYEVKWIWEFGDTKYVIDGLDEIKFRVLSVNYPSIPIEQAEGSKPFAPMVING 179
R+ E++FRVL V YP IP+EQ ++PFAPM + G
Sbjct: 107 -------RHN-----------------QEVRFRVLKVRYPPIPLEQERDAQPFAPMEVIG 142
Query: 180 SIDYDGLGPVSWW 192
I+ DGLG VSWW
Sbjct: 143 DINSDGLGLVSWW 155
>gi|357517543|ref|XP_003629060.1| DNA-directed RNA polymerase III subunit RPC8 [Medicago truncatula]
gi|355523082|gb|AET03536.1| DNA-directed RNA polymerase III subunit RPC8 [Medicago truncatula]
Length = 187
Score = 171 bits (433), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 84/138 (60%), Positives = 102/138 (73%), Gaps = 3/138 (2%)
Query: 1 MFYLSKIEHTLRLPPHLLRLPLNEAIKLELENVFLDKVIANLGLCISIYDIKEIEGGFVY 60
MFYLSKIEH LPPHLL P+ EAI+ ELE +FLDKVI LGLCIS+YDI IEGG ++
Sbjct: 28 MFYLSKIEHKFALPPHLLARPIREAIQSELERLFLDKVIQKLGLCISVYDITSIEGGSIF 87
Query: 61 PGEGASTHTVKFRLVVFRPFVGEIIAAKLKESDANGLRLSLGFFEDIYVPSHLLPSPSRS 120
PG GA T+ V F L++FRPF GEII+AK+ DA+G+RLSLGFFEDIY+P+H +P PS
Sbjct: 88 PGAGAPTYQVVFNLIMFRPFPGEIISAKVMSLDADGVRLSLGFFEDIYIPTHHMPYPSYY 147
Query: 121 EPDPYGRYEVKWIWEFGD 138
R KW WE+G+
Sbjct: 148 ISKNNTR---KWTWEYGE 162
>gi|302838430|ref|XP_002950773.1| hypothetical protein VOLCADRAFT_74791 [Volvox carteri f.
nagariensis]
gi|300263890|gb|EFJ48088.1| hypothetical protein VOLCADRAFT_74791 [Volvox carteri f.
nagariensis]
Length = 201
Score = 167 bits (423), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 92/204 (45%), Positives = 124/204 (60%), Gaps = 17/204 (8%)
Query: 1 MFYLSKIEHTLRLPPHLLRLPLNEAIKLELENVFLDKVIANLGLCISIYDIKEIEGGFVY 60
MF +++IE +R+ P L+ +A+ +E F+DKVI NLGL ++IYD+ IEGGFVY
Sbjct: 1 MFIITQIEDQIRVLPQDLQKTPVDAVTAVIEQRFVDKVIPNLGLVVTIYDVLHIEGGFVY 60
Query: 61 PGEGASTHTVKFRLVVFRPFVGEIIAAKLKESDANGLRLSLGFFEDIYVPSHLLPSPSRS 120
P +GA+ V+FR+VVFRP VGEII KLK GLR+SL FF+D+ +P H L PS
Sbjct: 61 PNDGAAFFKVQFRVVVFRPSVGEIIVGKLKSCSREGLRVSLDFFDDVLIPEHALQDPSF- 119
Query: 121 EPDPYGRYEVKWIWEFGDTKYVIDGLDEIKFRVLSV--NYPSIPI--EQAEG-------- 168
Y E W+W+F +D + I+FRV SV N P PI + A G
Sbjct: 120 ----YDESERLWVWKFDGNDMYMDLQEPIRFRVHSVKFNTPPTPIQLQNATGDDKLLGTA 175
Query: 169 SKPFAPMVINGSIDYDGLGPVSWW 192
+KPF+PMV+ G I+ DGLG +WW
Sbjct: 176 AKPFSPMVVMGDINGDGLGLTTWW 199
>gi|357517545|ref|XP_003629061.1| DNA-directed RNA polymerase III subunit RPC8 [Medicago truncatula]
gi|355523083|gb|AET03537.1| DNA-directed RNA polymerase III subunit RPC8 [Medicago truncatula]
Length = 191
Score = 166 bits (420), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 95/194 (48%), Positives = 122/194 (62%), Gaps = 33/194 (17%)
Query: 1 MFYLSKIEHTLRLPPHLLRLPLNEAIKLELENVFLDKVIANLGLCISIYDIKEIEGGFVY 60
MFYLSKIEH LPPHLL P+ EAI+ ELE +FLDKV + L
Sbjct: 28 MFYLSKIEHKFALPPHLLARPIREAIQSELERLFLDKVFWRVYL---------------- 71
Query: 61 PGEGASTHTVKFRLVVFRPFVGEIIAAKLKESDANGLRLSLGFFEDIYVPSHLLPSPSRS 120
P S GEII+AK+ DA+G+RLSLGFFEDIY+P+H +P PS
Sbjct: 72 PRCWCSD------------LPGEIISAKVMSLDADGVRLSLGFFEDIYIPTHHMPYPSYY 119
Query: 121 EPDPYGRYEVKWIWEFGDT--KYVIDGLDEIKFRVLSVNYPSIPIEQAEGSKPFAPMVIN 178
R KW WE+G+ ++ I+ +EI+F+VLSV+YP+IP+EQA+ SKPFAPMV+N
Sbjct: 120 ISKNNTR---KWTWEYGEETDEFNIEISNEIRFQVLSVSYPTIPVEQAKESKPFAPMVVN 176
Query: 179 GSIDYDGLGPVSWW 192
GS+ ++GLGPVSWW
Sbjct: 177 GSLYHEGLGPVSWW 190
>gi|255073311|ref|XP_002500330.1| predicted protein [Micromonas sp. RCC299]
gi|226515593|gb|ACO61588.1| predicted protein [Micromonas sp. RCC299]
Length = 201
Score = 165 bits (418), Expect = 8e-39, Method: Compositional matrix adjust.
Identities = 87/204 (42%), Positives = 126/204 (61%), Gaps = 17/204 (8%)
Query: 1 MFYLSKIEHT-LRLPPHLLRLPLNEAIKLELENVFLDKVIANLGLCISIYDIKEIEGGFV 59
MF +S++E +++ P L P EAI E+E++++DKVI +LGL I++Y+I IEGG V
Sbjct: 1 MFQISRLEDANVKILPENLGKPRLEAITQEIESLYIDKVIKDLGLVITLYEIVSIEGGTV 60
Query: 60 YPGEGASTHTVKFRLVVFRPFVGEIIAAKLKESDANGLRLSLGFFEDIYVPSHLLPSPSR 119
YPGEG++ V+FR+VVFRPFVGEII LK++D GL + +GFF DI+VP HL+ PS
Sbjct: 61 YPGEGSAHFKVEFRVVVFRPFVGEIIEGTLKKADKTGLYVDIGFFSDIFVPEHLMQEPSV 120
Query: 120 SEPDPYGRYEVKWIWEFGDTKYVIDGLDEIKFRVLSVNYPSIP-----------IEQAEG 168
+ D E W+W + D K +D + ++ R+ + +P P +E A
Sbjct: 121 FDED-----EQLWVWMYEDAKMFMDLEEPVRIRIQGIKFPDQPRTSDELVGRTALEGATP 175
Query: 169 SKPFAPMVINGSIDYDGLGPVSWW 192
FAPMV+ I+ DGLG +SWW
Sbjct: 176 DGTFAPMVVMADINADGLGLISWW 199
>gi|260824541|ref|XP_002607226.1| hypothetical protein BRAFLDRAFT_104488 [Branchiostoma floridae]
gi|229292572|gb|EEN63236.1| hypothetical protein BRAFLDRAFT_104488 [Branchiostoma floridae]
Length = 203
Score = 148 bits (374), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 80/204 (39%), Positives = 122/204 (59%), Gaps = 17/204 (8%)
Query: 1 MFYLSKIEHTLRLPPHLLRLPLNEAIKLELENVFLDKVIANLGLCISIYDIKEIEGGFVY 60
MF L ++ T+R+PPH+ + LN+A+ EL N F +KV+ N+GLCI+++DI ++E F++
Sbjct: 1 MFTLVEMTDTVRIPPHIFHIKLNDAVIEELNNKFANKVVYNVGLCIALFDITKLEDSFIF 60
Query: 61 PGEGASTHTVKFRLVVFRPFVGEIIAAKLKESDANGLRLSLGFFEDIYVPSHLLPSPSRS 120
PG+GAS V FR VVFRPF+ EI+ +++ G+ +SLGFF+DI +P L PS+
Sbjct: 61 PGDGASHTRVHFRYVVFRPFMDEILQGRIRSCSREGVHVSLGFFDDILIPPDALQQPSK- 119
Query: 121 EPDPYGRYEVKWIWEF----GDTKYVIDGLDEIKFRVLSVNY----PSIP--IEQAEGSK 170
+ E W+WE+ G +D +EI+FRV+ + P+ P E AE K
Sbjct: 120 ----FDESEQVWVWEYETEEGTHDLFMDINEEIRFRVVDEVFVDTTPTGPKVSEAAESDK 175
Query: 171 PF--APMVINGSIDYDGLGPVSWW 192
+P + G+I GLG +SWW
Sbjct: 176 EAKKSPYALVGTISEPGLGLLSWW 199
>gi|307202151|gb|EFN81651.1| DNA-directed RNA polymerase III subunit RPC8 [Harpegnathos
saltator]
Length = 200
Score = 147 bits (372), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 83/203 (40%), Positives = 123/203 (60%), Gaps = 17/203 (8%)
Query: 1 MFYLSKIEHTLRLPPHLLRLPLNEAIKLELENVFLDKVIANLGLCISIYDIKEIEGGFVY 60
MF L+ ++ T+R P+ + LN+ I EL +KV N+GLCI +YDI +IE V+
Sbjct: 1 MFILADLKDTVRTTPNNFKQKLNDVITDELNRKLGNKVYVNVGLCIMLYDITKIEESHVF 60
Query: 61 PGEGASTHTVKFRLVVFRPFVGEIIAAKLKESDANGLRLSLGFFEDIYVPSHLLPSPSRS 120
PG+GAS V FR VVFRPF+ EI+ K + A+G+ ++LGFF+DI +P H LP PSR
Sbjct: 61 PGDGASHTNVSFRFVVFRPFMEEILIGKTRFCSADGIHVTLGFFDDIIIPPHKLPYPSR- 119
Query: 121 EPDPYGRYEVKWIWEF----GDTKYVIDGLDE-IKFRVLSVNY------PSIPIEQAEGS 169
+ + + W+WE+ G T + L+E I+FRV++ + P +E+ E +
Sbjct: 120 ----FDQRDQVWVWEYKTEEGSTHDLYVDLEELIRFRVVNEIFTEETPKPPDTVEKEETN 175
Query: 170 KPFAPMVINGSIDYDGLGPVSWW 192
K AP +++GSID GLGP+ WW
Sbjct: 176 K-VAPYILHGSIDEAGLGPLLWW 197
>gi|383853110|ref|XP_003702067.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC8-like
isoform 1 [Megachile rotundata]
Length = 204
Score = 147 bits (371), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 80/207 (38%), Positives = 128/207 (61%), Gaps = 21/207 (10%)
Query: 1 MFYLSKIEHTLRLPPHLLRLPLNEAIKLELENVFLDKVIANLGLCISIYDIKEIEGGFVY 60
MF L++++ T+R+PP + LN+A+ EL +KV N+GLCI+++DI +IE +++
Sbjct: 1 MFVLAELKDTVRIPPWEFKRKLNDAVTDELNRKLANKVYLNVGLCIALHDITKIEESYIF 60
Query: 61 PGEGASTHTVKFRLVVFRPFVGEIIAAKLKESDANGLRLSLGFFEDIYVPSHLLPSPSRS 120
PG+GAS V FR +VFRPF+ EI+ K++ +G+ ++LGFFEDI +P H L PSR
Sbjct: 61 PGDGASHTKVIFRFIVFRPFMEEILIGKIRSCSVDGVHVTLGFFEDIVIPPHKLQHPSR- 119
Query: 121 EPDPYGRYEVKWIWEF--GDTK---YVIDGLDEIKFRVLSVNY----PSIP------IEQ 165
+ + E W+WE+ GD + +D + I+FRV+S + P+ P +E+
Sbjct: 120 ----FDQMEQAWVWEYDTGDGEKHDLFMDAGEIIRFRVVSETFTEALPTGPNMSGENVEK 175
Query: 166 AEGSKPFAPMVINGSIDYDGLGPVSWW 192
+E SK +P + G+ID GLG ++WW
Sbjct: 176 SE-SKNTSPYTLGGAIDEPGLGLLTWW 201
>gi|48096324|ref|XP_394665.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC8-like
isoform 1 [Apis mellifera]
Length = 203
Score = 147 bits (370), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 79/205 (38%), Positives = 125/205 (60%), Gaps = 18/205 (8%)
Query: 1 MFYLSKIEHTLRLPPHLLRLPLNEAIKLELENVFLDKVIANLGLCISIYDIKEIEGGFVY 60
MF L++++ T+R+PP + LN+AI EL +KV N+GLCI+++DI +IE +++
Sbjct: 1 MFVLAELKDTVRIPPAEFKQKLNDAITDELNRKLANKVYLNVGLCIALHDITKIEESYIF 60
Query: 61 PGEGASTHTVKFRLVVFRPFVGEIIAAKLKESDANGLRLSLGFFEDIYVPSHLLPSPSRS 120
PG+GAS V FR +VFRPF+ EI+ K++ +G+ ++LGFFEDI +P H L PSR
Sbjct: 61 PGDGASHTKVIFRYIVFRPFMEEILIGKIRSCSIDGVHVTLGFFEDIVIPPHKLQHPSR- 119
Query: 121 EPDPYGRYEVKWIWEF--GDTK---YVIDGLDEIKFRVLSVNY-------PSIPIE-QAE 167
+ + E W+WE+ GD + +D + I+FRV+S + P+I E +
Sbjct: 120 ----FDQMEQAWVWEYDTGDGEKHDLFMDAGEIIRFRVVSETFTEALPTGPNISGETETS 175
Query: 168 GSKPFAPMVINGSIDYDGLGPVSWW 192
+K +P + G+ID GLG ++WW
Sbjct: 176 EAKNISPYTLGGAIDEPGLGLLTWW 200
>gi|380018290|ref|XP_003693065.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC8-like
isoform 1 [Apis florea]
Length = 203
Score = 146 bits (368), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 79/205 (38%), Positives = 125/205 (60%), Gaps = 18/205 (8%)
Query: 1 MFYLSKIEHTLRLPPHLLRLPLNEAIKLELENVFLDKVIANLGLCISIYDIKEIEGGFVY 60
MF L++++ T+R+PP + LN+AI EL +KV N+GLCI+++DI +IE +++
Sbjct: 1 MFVLAELKDTVRIPPVEFKQKLNDAITDELNRKLANKVYLNVGLCIALHDITKIEESYIF 60
Query: 61 PGEGASTHTVKFRLVVFRPFVGEIIAAKLKESDANGLRLSLGFFEDIYVPSHLLPSPSRS 120
PG+GAS V FR +VFRPF+ EI+ K++ +G+ ++LGFFEDI +P H L PSR
Sbjct: 61 PGDGASHTKVIFRYIVFRPFMEEILIGKIRSCSIDGVHVTLGFFEDIVIPPHKLQHPSR- 119
Query: 121 EPDPYGRYEVKWIWEF--GDTK---YVIDGLDEIKFRVLSVNY-------PSIPIE-QAE 167
+ + E W+WE+ GD + +D + I+FRV+S + P+I E +
Sbjct: 120 ----FDQMEQAWVWEYDTGDGEKHDLFMDAGEIIRFRVVSETFTEALPTGPNISGETETS 175
Query: 168 GSKPFAPMVINGSIDYDGLGPVSWW 192
+K +P + G+ID GLG ++WW
Sbjct: 176 EAKNISPYTLGGAIDEPGLGLLTWW 200
>gi|414886499|tpg|DAA62513.1| TPA: hypothetical protein ZEAMMB73_496623 [Zea mays]
Length = 218
Score = 145 bits (367), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 67/114 (58%), Positives = 87/114 (76%)
Query: 1 MFYLSKIEHTLRLPPHLLRLPLNEAIKLELENVFLDKVIANLGLCISIYDIKEIEGGFVY 60
MF LS+IEH L +PPHLL PL +AIK ELE +FLDKVI LGLC+S+YDI+ IEGG ++
Sbjct: 89 MFSLSQIEHDLPMPPHLLSRPLPDAIKAELERLFLDKVITKLGLCVSVYDIRSIEGGSIH 148
Query: 61 PGEGASTHTVKFRLVVFRPFVGEIIAAKLKESDANGLRLSLGFFEDIYVPSHLL 114
PGEG ST+ V FRL++F+PF GEI+ ++ D GL++SL FF DI +P HL+
Sbjct: 149 PGEGCSTYKVSFRLLMFKPFNGEILVGRITGYDDKGLQVSLEFFSDICIPGHLM 202
>gi|414886500|tpg|DAA62514.1| TPA: hypothetical protein ZEAMMB73_496623 [Zea mays]
Length = 210
Score = 145 bits (365), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 67/114 (58%), Positives = 87/114 (76%)
Query: 1 MFYLSKIEHTLRLPPHLLRLPLNEAIKLELENVFLDKVIANLGLCISIYDIKEIEGGFVY 60
MF LS+IEH L +PPHLL PL +AIK ELE +FLDKVI LGLC+S+YDI+ IEGG ++
Sbjct: 89 MFSLSQIEHDLPMPPHLLSRPLPDAIKAELERLFLDKVITKLGLCVSVYDIRSIEGGSIH 148
Query: 61 PGEGASTHTVKFRLVVFRPFVGEIIAAKLKESDANGLRLSLGFFEDIYVPSHLL 114
PGEG ST+ V FRL++F+PF GEI+ ++ D GL++SL FF DI +P HL+
Sbjct: 149 PGEGCSTYKVSFRLLMFKPFNGEILVGRITGYDDKGLQVSLEFFSDICIPGHLM 202
>gi|238014632|gb|ACR38351.1| unknown [Zea mays]
Length = 130
Score = 144 bits (364), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 67/114 (58%), Positives = 87/114 (76%)
Query: 1 MFYLSKIEHTLRLPPHLLRLPLNEAIKLELENVFLDKVIANLGLCISIYDIKEIEGGFVY 60
MF LS+IEH L +PPHLL PL +AIK ELE +FLDKVI LGLC+S+YDI+ IEGG ++
Sbjct: 1 MFSLSQIEHDLPMPPHLLSRPLPDAIKAELERLFLDKVITKLGLCVSVYDIRSIEGGSIH 60
Query: 61 PGEGASTHTVKFRLVVFRPFVGEIIAAKLKESDANGLRLSLGFFEDIYVPSHLL 114
PGEG ST+ V FRL++F+PF GEI+ ++ D GL++SL FF DI +P HL+
Sbjct: 61 PGEGCSTYKVSFRLLMFKPFNGEILVGRITGYDDKGLQVSLEFFSDICIPGHLM 114
>gi|91092914|ref|XP_971430.1| PREDICTED: similar to DNA-directed RNA polymerase III 25 kDa
polypeptide [Tribolium castaneum]
gi|270003098|gb|EEZ99545.1| hypothetical protein TcasGA2_TC000127 [Tribolium castaneum]
Length = 199
Score = 144 bits (362), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 76/202 (37%), Positives = 118/202 (58%), Gaps = 15/202 (7%)
Query: 1 MFYLSKIEHTLRLPPHLLRLPLNEAIKLELENVFLDKVIANLGLCISIYDIKEIEGGFVY 60
MF ++++++ R+PP L L LN+AI EL +KV+ N+GLCI++YDI ++ F++
Sbjct: 1 MFIVAEMKNVTRIPPELFNLKLNDAIAGELNKKLANKVVLNVGLCIALYDITSLQESFIF 60
Query: 61 PGEGASTHTVKFRLVVFRPFVGEIIAAKLKESDANGLRLSLGFFEDIYVPSHLLPSPSRS 120
PG+GAS V FR +VFRPF+ EI+ K++ G+ ++LGFF+DI +P L PS+
Sbjct: 61 PGDGASHTRVSFRYIVFRPFIEEILVGKIRSCSQEGVHVTLGFFDDILIPPSALQHPSK- 119
Query: 121 EPDPYGRYEVKWIWEF--GD---TKYVIDGLDEIKFRVLSVNY-PSIPI----EQAEGSK 170
+ E W+WE+ GD +D + IKFRV + + + P E + S+
Sbjct: 120 ----FNETEQAWVWEYDTGDGCKHDLFMDAGETIKFRVTAEFFNETCPTGSLQETQDKSE 175
Query: 171 PFAPMVINGSIDYDGLGPVSWW 192
P + GSI+ GLG +SWW
Sbjct: 176 NKVPYSLTGSINEPGLGLLSWW 197
>gi|332022469|gb|EGI62776.1| DNA-directed RNA polymerase III subunit RPC8 [Acromyrmex
echinatior]
Length = 205
Score = 141 bits (355), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 75/208 (36%), Positives = 122/208 (58%), Gaps = 22/208 (10%)
Query: 1 MFYLSKIEHTLRLPPHLLRLPLNEAIKLELENVFLDKVIANLGLCISIYDIKEIEGGFVY 60
MF L++++ T+R+PP + LN I EL +KV ++GLCI+++D+ +IE +++
Sbjct: 1 MFVLTELKDTVRIPPSSFKSKLNNVIADELNRKLANKVYKDVGLCITLHDVTKIEESYIF 60
Query: 61 PGEGASTHTVKFRLVVFRPFVGEIIAAKLKESDANGLRLSLGFFEDIYVPSHLLPSPSRS 120
PG+GAS V FR +VFRP++ EI+ K++ G+ ++LGFFEDI +P H L PSR
Sbjct: 61 PGDGASHTKVTFRFIVFRPWMEEILIGKIRSCSPEGVHVTLGFFEDIVIPPHKLQHPSR- 119
Query: 121 EPDPYGRYEVKWIW----EFGDTKYV-IDGLDEIKFRVLSVNYPSIPI-----------E 164
+ + E W+W E G T + +D + I+FR++ + P+ E
Sbjct: 120 ----FDQMEQAWVWIYKTEDGQTHDLFMDAGEVIRFRIVKEIFTEAPLPSVLNASQDISE 175
Query: 165 QAEGSKPFAPMVINGSIDYDGLGPVSWW 192
+AE + AP +++GSID GLG ++WW
Sbjct: 176 KAEANNA-APYILHGSIDEPGLGLLTWW 202
>gi|340716162|ref|XP_003396570.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC8-like
[Bombus terrestris]
Length = 203
Score = 140 bits (354), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 77/205 (37%), Positives = 122/205 (59%), Gaps = 18/205 (8%)
Query: 1 MFYLSKIEHTLRLPPHLLRLPLNEAIKLELENVFLDKVIANLGLCISIYDIKEIEGGFVY 60
MF L++++ T+R+PP + LN+AI EL +KV ++GLCI+++DI +IE +++
Sbjct: 1 MFVLTELKDTVRIPPWEFKRKLNDAITDELNRKLANKVYLDVGLCIALHDITKIEESYIF 60
Query: 61 PGEGASTHTVKFRLVVFRPFVGEIIAAKLKESDANGLRLSLGFFEDIYVPSHLLPSPSRS 120
PG+GAS V FR +VFRPF+ EI+ K++ +G+ ++LGFFEDI +P + L PSR
Sbjct: 61 PGDGASHTKVVFRFIVFRPFMEEILIGKIRSCSVDGVHVTLGFFEDIVIPPNKLQHPSR- 119
Query: 121 EPDPYGRYEVKWIWEF--GDTK---YVIDGLDEIKFRVLSVNY----PSIPIEQAEGSKP 171
+ + E W+WE+ GD + +D + I+FRV+S + P+ P E K
Sbjct: 120 ----FDQIEQAWVWEYDTGDGQKHDLFMDAGEIIRFRVISETFTEALPTGPNMSGETEKS 175
Query: 172 FA----PMVINGSIDYDGLGPVSWW 192
A P + +ID GLG ++WW
Sbjct: 176 EAKNTPPYTLGAAIDEPGLGLLTWW 200
>gi|350396628|ref|XP_003484613.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC8-like
isoform 1 [Bombus impatiens]
Length = 203
Score = 140 bits (354), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 77/205 (37%), Positives = 122/205 (59%), Gaps = 18/205 (8%)
Query: 1 MFYLSKIEHTLRLPPHLLRLPLNEAIKLELENVFLDKVIANLGLCISIYDIKEIEGGFVY 60
MF L++++ T+R+PP + LN+AI EL +KV ++GLCI+++DI +IE +++
Sbjct: 1 MFVLAELKDTVRIPPWEFKRKLNDAITDELNRKLANKVYLDVGLCIALHDITKIEESYIF 60
Query: 61 PGEGASTHTVKFRLVVFRPFVGEIIAAKLKESDANGLRLSLGFFEDIYVPSHLLPSPSRS 120
PG+GAS V FR +VFRPF+ EI+ K++ +G+ ++LGFFEDI +P + L PSR
Sbjct: 61 PGDGASHTKVVFRFIVFRPFMEEILIGKIRSCSVDGVHVTLGFFEDIVIPPNKLQHPSR- 119
Query: 121 EPDPYGRYEVKWIWEF--GDTK---YVIDGLDEIKFRVLSVNY----PSIPIEQAEGSKP 171
+ + E W+WE+ GD + +D + I+FRV+S + P+ P E K
Sbjct: 120 ----FDQIEQAWVWEYDTGDGQKHDLFMDAGEIIRFRVISETFTEALPTGPNMSGETEKS 175
Query: 172 FA----PMVINGSIDYDGLGPVSWW 192
A P + +ID GLG ++WW
Sbjct: 176 EAKNTSPYTLGAAIDEPGLGLLTWW 200
>gi|291243945|ref|XP_002741858.1| PREDICTED: hypothetical protein isoform 1 [Saccoglossus
kowalevskii]
Length = 204
Score = 139 bits (351), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 77/206 (37%), Positives = 117/206 (56%), Gaps = 19/206 (9%)
Query: 1 MFYLSKIEHTLRLPPHLLRLPLNEAIKLELENVFLDKVIANLGLCISIYDIKEIEGGFVY 60
MF LS++ T+R+ P L LN+AI EL +KV+ N+GLCI+++DI ++E +++
Sbjct: 1 MFVLSEMTDTVRIKPWQFHLKLNDAIAEELNKKLANKVVHNVGLCIALHDITKLEDSYLF 60
Query: 61 PGEGASTHTVKFRLVVFRPFVGEIIAAKLKESDANGLRLSLGFFEDIYVPSHLLPSPSRS 120
PG+GAS V FR +VFRPF+ EI K++ +G+ +SLGFF+DI +P L PS+
Sbjct: 61 PGDGASHTKVCFRYIVFRPFLDEIFIGKIRSCSRDGVHVSLGFFDDIVIPPDALQQPSK- 119
Query: 121 EPDPYGRYEVKWIWEF----GDTKYVIDGLDEIKFRVLSVNY-PSIPI---------EQA 166
+ E W+WE+ G +D ++I+FRV+ + + PI E
Sbjct: 120 ----FDEAEQVWVWEYETDEGTHDLFMDINEKIRFRVVDETFVDTTPIGPRTIVEVSEVT 175
Query: 167 EGSKPFAPMVINGSIDYDGLGPVSWW 192
E +P V+ GSI GLG +SWW
Sbjct: 176 ETDVKRSPYVLTGSISEPGLGLLSWW 201
>gi|443730027|gb|ELU15722.1| hypothetical protein CAPTEDRAFT_156703 [Capitella teleta]
Length = 208
Score = 139 bits (351), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 73/210 (34%), Positives = 121/210 (57%), Gaps = 23/210 (10%)
Query: 1 MFYLSKIEHTLRLPPHLLRLPLNEAIKLELENVFLDKVIANLGLCISIYDIKEIEGGFVY 60
MF L +++ T+R+PP + LN+A++ L +KV+ N+GLCIS++DI EI +++
Sbjct: 1 MFTLVEMKDTVRVPPWRFKTKLNQAVEEALNMKLANKVVHNVGLCISLWDITEIADSYIF 60
Query: 61 PGEGASTHTVKFRLVVFRPFVGEIIAAKLKESDANGLRLSLGFFEDIYVPSHLLPSPSRS 120
PG+G+S VKFR VVFRPF+ EI+ K++ S G+ +SLGFF+DI +PS + PSR
Sbjct: 61 PGDGSSHTIVKFRYVVFRPFMDEILVGKIRSSSKEGVHVSLGFFDDILIPSDAMQHPSR- 119
Query: 121 EPDPYGRYEVKWIWEF----GDTKYVIDGLDEIKFRVLSVNY----PSIPIEQAEG---- 168
+ E W+W++ G +D +E++FRV+ + P+ P + G
Sbjct: 120 ----FDEAEQLWVWKYDTGEGSHDLFMDIGEEVRFRVVDETFVDTSPTGPESSSSGVDGA 175
Query: 169 ------SKPFAPMVINGSIDYDGLGPVSWW 192
++ +P + G++ GLG ++WW
Sbjct: 176 ETQEVTAEKKSPFTLIGAVSEPGLGLLTWW 205
>gi|308804628|ref|XP_003079626.1| KIAA1665 protein (ISS) [Ostreococcus tauri]
gi|116058082|emb|CAL53271.1| KIAA1665 protein (ISS) [Ostreococcus tauri]
Length = 213
Score = 138 bits (347), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 72/205 (35%), Positives = 120/205 (58%), Gaps = 18/205 (8%)
Query: 1 MFYLSKI-EHTLRLPPHLLRLPLNEAIKLELENVFLDKVIANLG-LCISIYDIKEIEGGF 58
MF + + + +++ P L EA+ ELE++++DKV+A G LC+++Y+I I GG
Sbjct: 9 MFQIVALSDSAVKIAPANLGKSTLEAVTQELESLYVDKVLAECGGLCVTLYEITNISGGA 68
Query: 59 VYPGEGASTHTVKFRLVVFRPFVGEIIAAKLKESDANGLRLSLGFFEDIYVPSHLLPSPS 118
V GEG V+F+LV+F+PF GE++ KL+ SD +G +S+GFF+D+++P + PS
Sbjct: 69 VLSGEGCVCFEVEFKLVLFKPFTGEVLEGKLESSDEHGAHVSIGFFDDVFIPPSNMQDPS 128
Query: 119 RSEPDPYGRYEVKWIWEFGDTKYVIDGLDEIKFRVLSVNYPSIPIEQAE--------GSK 170
+ D E WIW++ + ++ ++++FRV+ +P P E G+K
Sbjct: 129 EWDED-----EKAWIWDYNGERIKLEVGEKVRFRVVGSRFPDSPKTAEELASLTADSGAK 183
Query: 171 P---FAPMVINGSIDYDGLGPVSWW 192
FAPM++ G ++ DGLG SWW
Sbjct: 184 ANGSFAPMLVVGDLNADGLGMCSWW 208
>gi|332376875|gb|AEE63577.1| unknown [Dendroctonus ponderosae]
Length = 215
Score = 138 bits (347), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 76/204 (37%), Positives = 118/204 (57%), Gaps = 17/204 (8%)
Query: 1 MFYLSKIEHTLRLPPHLLRLPLNEAIKLELENVFLDKVIANLGLCISIYDIKEIEGGFVY 60
MF L ++++ R+ P + LN A+++EL +KV+ N+GLCI+++DI ++ F+
Sbjct: 15 MFILVEMKNITRILPEHFHIKLNNAVEIELNKKLANKVVLNVGLCIALFDITSLKESFII 74
Query: 61 PGEGASTHTVKFRLVVFRPFVGEIIAAKLKESDANGLRLSLGFFEDIYVPSHLLPSPSRS 120
PG+GAS V FR VVFRPF+ EI+ K++ G+ ++LGFF+DI +P L PS+
Sbjct: 75 PGDGASHTIVHFRYVVFRPFMEEILVGKIRSCSQEGVHVTLGFFDDILIPPIALQYPSK- 133
Query: 121 EPDPYGRYEVKWIWEF--GD-TKY--VIDGLDEIKFRVLSVNY-------PSIPIEQAEG 168
+ E W+WE+ GD +K+ ID D I+FRV + P+I E E
Sbjct: 134 ----FNETEQAWVWEYDVGDGSKHDLFIDAGDSIRFRVTGERFEETCPAGPAIMQEAEET 189
Query: 169 SKPFAPMVINGSIDYDGLGPVSWW 192
++ P + GSI+ GLG +SWW
Sbjct: 190 TENKVPYSLIGSINEPGLGVISWW 213
>gi|224095057|ref|XP_002197392.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC8 isoform 1
[Taeniopygia guttata]
Length = 206
Score = 137 bits (346), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 79/209 (37%), Positives = 116/209 (55%), Gaps = 23/209 (11%)
Query: 1 MFYLSKIEHTLRLPPHLLRLPLNEAIKLELENVFLDKVIANLGLCISIYDIKEIEGGFVY 60
MF L ++ T+R+PP LNE+I EL +KV+ N+GLCI +YDI ++E +++
Sbjct: 1 MFVLVEMTDTVRIPPWQFERKLNESIAEELNKKLANKVVYNVGLCICLYDITKLEDSYIF 60
Query: 61 PGEGASTHTVKFRLVVFRPFVGEIIAAKLKESDANGLRLSLGFFEDIYVPSHLLPSPSRS 120
PG+GAS V FR VVF PF+ EI+ ++K +G+ +SLGFF+DI +P L P++
Sbjct: 61 PGDGASHTKVHFRYVVFHPFLDEILIGQIKSCSQDGVHVSLGFFDDIVIPPESLQQPAK- 119
Query: 121 EPDPYGRYEVKWIWEF----GDTKYVIDGLDEIKFRVLSVNY----PSIPIEQAEGS--- 169
+ E W+WE+ G +D +EI+FRV+ + P+ P AE S
Sbjct: 120 ----FDEAEQVWVWEYETEEGAHDLYMDIGEEIRFRVVDETFVDTSPTGP-SSAEASTSN 174
Query: 170 ------KPFAPMVINGSIDYDGLGPVSWW 192
K AP + GSI GLG +SWW
Sbjct: 175 AAEEVQKKEAPYTLVGSISEPGLGLLSWW 203
>gi|190348881|gb|EDK41428.2| hypothetical protein PGUG_05526 [Meyerozyma guilliermondii ATCC
6260]
Length = 194
Score = 137 bits (344), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 73/198 (36%), Positives = 115/198 (58%), Gaps = 11/198 (5%)
Query: 1 MFYLSKIEHTLRLPPHLLRLPLNEAIKLELENVFLDKVIANLGLCISIYDIKEIEGGFVY 60
MF LS++ +++PPH +P+NEA+ EL + +KVIANLGL ++++D+ EI G +
Sbjct: 1 MFILSEVSDIVKIPPHTFHIPINEAVTNELHKKYANKVIANLGLVVAVWDLSEIHDGQLK 60
Query: 61 PGEGASTHTVKFRLVVFRPFVGEIIAAKLKESDANGLRLSLGFFEDIYVPSHLLPSPSRS 120
PG+GAS V+FR VV++PFVGEI++ + + A G+++ + FF++I+VP +
Sbjct: 61 PGDGASFVKVRFRCVVWKPFVGEILSGWVTQCTAEGIKIGMRFFDEIFVPKNYFFENCEF 120
Query: 121 EPDPYGRYEVKWIWEFGD-TKYVIDGLDEIKFRVLSVNYPSI---PIEQ--AEGSKPFAP 174
+P E W+W+ D T+ ID + ++FRV + SI P Q E P
Sbjct: 121 KP-----VEKAWVWKPDDETELYIDVNERVRFRVEEEVFSSIKPRPTNQDNQEEDNKVPP 175
Query: 175 MVINGSIDYDGLGPVSWW 192
+ S DG+G VSWW
Sbjct: 176 YALIASCQTDGMGCVSWW 193
>gi|118082710|ref|XP_416229.2| PREDICTED: DNA-directed RNA polymerase III subunit RPC8 [Gallus
gallus]
gi|326912007|ref|XP_003202346.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC8-like
[Meleagris gallopavo]
Length = 206
Score = 137 bits (344), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 78/209 (37%), Positives = 116/209 (55%), Gaps = 23/209 (11%)
Query: 1 MFYLSKIEHTLRLPPHLLRLPLNEAIKLELENVFLDKVIANLGLCISIYDIKEIEGGFVY 60
MF L ++ T+R+PP LNE+I EL +KV+ N+GLCI +YDI ++E +++
Sbjct: 1 MFVLVEMTDTVRIPPWQFERKLNESIAEELNKKLANKVVYNVGLCICLYDITKLEDSYIF 60
Query: 61 PGEGASTHTVKFRLVVFRPFVGEIIAAKLKESDANGLRLSLGFFEDIYVPSHLLPSPSRS 120
PG+GAS V FR VVF PF+ EI+ ++K +G+ +S+GFF+DI +P L P++
Sbjct: 61 PGDGASHTKVHFRYVVFHPFLDEILVGEIKSCSQDGVHVSIGFFDDIVIPPESLQQPAK- 119
Query: 121 EPDPYGRYEVKWIWEF----GDTKYVIDGLDEIKFRVLSVNY----PSIPIEQAEGS--- 169
+ E W+WE+ G +D +EI+FRV+ + P+ P AE S
Sbjct: 120 ----FDEAEQVWVWEYETEEGAHDLYMDIGEEIRFRVVDETFVDTSPTGP-SSAEASTSN 174
Query: 170 ------KPFAPMVINGSIDYDGLGPVSWW 192
K AP + GSI GLG +SWW
Sbjct: 175 ATEEVQKKEAPYTLVGSISEPGLGLLSWW 203
>gi|290562083|gb|ADD38438.1| DNA-directed RNA polymerase III subunit RPC8 [Lepeophtheirus
salmonis]
Length = 200
Score = 136 bits (343), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 78/203 (38%), Positives = 119/203 (58%), Gaps = 16/203 (7%)
Query: 1 MFYLSKIEHTLRLPPHLLRLPLNEAIKLELENVFLDKVIANLGLCISIYDIKEIEGGFVY 60
MF LS+++ +RLP L L +A++ E+ +KV+ N+GL + ++DI EI FV+
Sbjct: 1 MFVLSELKSLVRLPASQLGKSLPDALREEINRKVSNKVVLNVGLAVCLFDILEIGDSFVF 60
Query: 61 PGEGASTHTVKFRLVVFRPFVGEIIAAKLKESDANGLRLSLGFFEDIYVPSHLLPSPSRS 120
PG+GAS V+FRL+VFRPF+ EII K+K +G+++SLGFFEDI+VP L +P R
Sbjct: 61 PGDGASHTHVQFRLLVFRPFMEEIINGKIKSCSKDGVQISLGFFEDIWVPPESLQNPYR- 119
Query: 121 EPDPYGRYEVKWIWEF-----GDTKYVIDGLDEIKFRVLSVNYPSIPIEQA---EGSKPF 172
+ + W+WE+ G +D +EI+FRV S ++ A E S+P
Sbjct: 120 ----FDEADQVWVWEYPTEDGGKHDLFMDPGEEIRFRVTSQSFSDTSPNVAPTEESSEPN 175
Query: 173 A---PMVINGSIDYDGLGPVSWW 192
+ P I S++ GLG ++WW
Sbjct: 176 SEKIPYTITASVNGPGLGLINWW 198
>gi|395540688|ref|XP_003772284.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC8
[Sarcophilus harrisii]
Length = 204
Score = 136 bits (343), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 77/206 (37%), Positives = 115/206 (55%), Gaps = 19/206 (9%)
Query: 1 MFYLSKIEHTLRLPPHLLRLPLNEAIKLELENVFLDKVIANLGLCISIYDIKEIEGGFVY 60
MF L ++ T+R+PP LN++I EL +KV+ N+GLCI +YDI ++E +V+
Sbjct: 1 MFVLVEMVDTVRIPPWQFERKLNDSIAEELNKKLANKVVYNVGLCICLYDITKLEDAYVF 60
Query: 61 PGEGASTHTVKFRLVVFRPFVGEIIAAKLKESDANGLRLSLGFFEDIYVPSHLLPSPSRS 120
PG+GAS V FR VVF PF+ EI+ +K +G+ +SLGFF+DI +P L P++
Sbjct: 61 PGDGASHTKVHFRYVVFHPFLDEILIGVIKGCSPDGVHVSLGFFDDILIPPESLQQPAK- 119
Query: 121 EPDPYGRYEVKWIWEF----GDTKYVIDGLDEIKFRVLSVNY----PSIPIEQA------ 166
+ E W+WE+ G +D +EI+FRV+ ++ P+ P A
Sbjct: 120 ----FDEAEQVWVWEYETEEGAHDLYMDTGEEIRFRVVDESFVDTSPTGPSSAATSTPSE 175
Query: 167 EGSKPFAPMVINGSIDYDGLGPVSWW 192
E + AP + GSI GLG +SWW
Sbjct: 176 EAPRKEAPYTLXGSISEPGLGLLSWW 201
>gi|50540012|ref|NP_001002476.1| DNA-directed RNA polymerase III subunit RPC8 [Danio rerio]
gi|49903087|gb|AAH76336.1| Zgc:92878 [Danio rerio]
Length = 214
Score = 136 bits (342), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 78/217 (35%), Positives = 115/217 (52%), Gaps = 30/217 (13%)
Query: 1 MFYLSKIEHTLRLPPHLLRLPLNEAIKLELENVFLDKVIANLGLCISIYDIKEIEGGFVY 60
MF L ++ T+R+PP + PLNEA+ EL +KV+ N+GLCI +YDI ++E +++
Sbjct: 1 MFVLVEMRDTVRIPPWSFQRPLNEAVAEELNKKLANKVVYNVGLCICLYDITKLEDSYIF 60
Query: 61 PGEGASTHTVKFRLVVFRPFVGEIIAAKLKESDANGLRLSLGFFEDIYVPSHLLPSPSRS 120
PG+GAS V FR VVF PF+ EI+ K+K A G+ +SLGFF+DI +P L P++
Sbjct: 61 PGDGASHTKVHFRYVVFHPFLDEILLGKIKGCSAEGVHVSLGFFDDILIPPESLQQPAK- 119
Query: 121 EPDPYGRYEVKWIWEF----GDTKYVIDGLDEIKFRVLSVNY----PSIPIEQAE----- 167
+ E W+WE+ G +D +EI+FRV + PS P E
Sbjct: 120 ----FDEAEQVWVWEYETDEGTHDLYMDQGEEIRFRVTDEVFVDTSPSGPSADKEAPGTG 175
Query: 168 ------------GSKPFAPMVINGSIDYDGLGPVSWW 192
+ +P + GS+ GLG +SWW
Sbjct: 176 AAAAPPAGAEDAAQQKESPYTLIGSVSEPGLGLLSWW 212
>gi|126343684|ref|XP_001363572.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC8-like
isoform 1 [Monodelphis domestica]
Length = 204
Score = 136 bits (342), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 78/206 (37%), Positives = 114/206 (55%), Gaps = 19/206 (9%)
Query: 1 MFYLSKIEHTLRLPPHLLRLPLNEAIKLELENVFLDKVIANLGLCISIYDIKEIEGGFVY 60
MF L ++ T+R+PP LNE+I EL +KV+ N+GLCI +YDI ++E +V+
Sbjct: 1 MFVLVEMVDTVRIPPWQFERELNESISEELNKKLANKVVYNIGLCICLYDITKLEDAYVF 60
Query: 61 PGEGASTHTVKFRLVVFRPFVGEIIAAKLKESDANGLRLSLGFFEDIYVPSHLLPSPSRS 120
PG+GAS V FR VVF PF+ EI+ +K +G+ +SLGFF+DI +P L P++
Sbjct: 61 PGDGASHTKVHFRYVVFHPFLDEILIGVIKGCSPDGVYVSLGFFDDILIPPESLQQPAK- 119
Query: 121 EPDPYGRYEVKWIWEF----GDTKYVIDGLDEIKFRVLSVNY----PSIP------IEQA 166
+ E W+WE+ G +D +EI+FRV+ ++ P+ P
Sbjct: 120 ----FDEAEQVWVWEYETEEGAHDLYMDTGEEIRFRVVDESFVDTSPTGPSSAEASTSSD 175
Query: 167 EGSKPFAPMVINGSIDYDGLGPVSWW 192
E K AP + GSI GLG +SWW
Sbjct: 176 EAPKKEAPYTLVGSISEPGLGLLSWW 201
>gi|13359203|dbj|BAB33335.1| KIAA1665 protein [Homo sapiens]
Length = 217
Score = 135 bits (340), Expect = 9e-30, Method: Compositional matrix adjust.
Identities = 77/206 (37%), Positives = 114/206 (55%), Gaps = 19/206 (9%)
Query: 1 MFYLSKIEHTLRLPPHLLRLPLNEAIKLELENVFLDKVIANLGLCISIYDIKEIEGGFVY 60
MF L ++ T+R+PP LN++I EL +KV+ N+GLCI ++DI ++E +V+
Sbjct: 14 MFVLVEMVDTVRIPPWQFERKLNDSIAEELNKKLANKVVYNVGLCICLFDITKLEDAYVF 73
Query: 61 PGEGASTHTVKFRLVVFRPFVGEIIAAKLKESDANGLRLSLGFFEDIYVPSHLLPSPSRS 120
PG+GAS V FR VVF PF+ EI+ K+K G+ +SLGFF+DI +P L P++
Sbjct: 74 PGDGASHTKVHFRCVVFHPFLDEILIGKIKGCSPEGVHVSLGFFDDILIPPESLQQPAK- 132
Query: 121 EPDPYGRYEVKWIWEF----GDTKYVIDGLDEIKFRVLSVNY----PSIP------IEQA 166
+ E W+WE+ G +D +EI+FRV+ ++ P+ P
Sbjct: 133 ----FDEAEQVWVWEYETEEGAHDLYMDTGEEIRFRVVDESFVDTSPTGPSSADATTSSE 188
Query: 167 EGSKPFAPMVINGSIDYDGLGPVSWW 192
E K AP + GSI GLG +SWW
Sbjct: 189 ELPKKEAPYTLVGSISEPGLGLLSWW 214
>gi|359487938|ref|XP_002264240.2| PREDICTED: DNA-directed RNA polymerase III subunit rpc8 [Vitis
vinifera]
Length = 152
Score = 135 bits (340), Expect = 9e-30, Method: Compositional matrix adjust.
Identities = 67/101 (66%), Positives = 81/101 (80%)
Query: 1 MFYLSKIEHTLRLPPHLLRLPLNEAIKLELENVFLDKVIANLGLCISIYDIKEIEGGFVY 60
MF+LS IEHTL+L PHLL LPL+EAIK ELE++FLDKVIANLGLCI + DI+ GFV+
Sbjct: 1 MFFLSLIEHTLQLSPHLLDLPLSEAIKGELESLFLDKVIANLGLCIFVNDIRSTACGFVF 60
Query: 61 PGEGASTHTVKFRLVVFRPFVGEIIAAKLKESDANGLRLSL 101
G ST+TV+FRLV+FR FV EII AKL +S+ NGLR+ L
Sbjct: 61 LGNSTSTYTVEFRLVMFRLFVKEIITAKLNKSNVNGLRIML 101
>gi|24475814|ref|NP_612211.1| DNA-directed RNA polymerase III subunit RPC8 isoform a [Homo
sapiens]
gi|65301161|ref|NP_001018060.1| DNA-directed RNA polymerase III subunit RPC8 isoform a [Homo
sapiens]
gi|332859900|ref|XP_001169430.2| PREDICTED: DNA-directed RNA polymerase III subunit RPC8 isoform 1
[Pan troglodytes]
gi|397487166|ref|XP_003814678.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC8 isoform 1
[Pan paniscus]
gi|397487168|ref|XP_003814679.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC8 isoform 2
[Pan paniscus]
gi|426394612|ref|XP_004063585.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC8 isoform 1
[Gorilla gorilla gorilla]
gi|426394614|ref|XP_004063586.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC8 isoform 2
[Gorilla gorilla gorilla]
gi|29428071|sp|Q9Y535.1|RPC8_HUMAN RecName: Full=DNA-directed RNA polymerase III subunit RPC8;
Short=RNA polymerase III subunit C8; AltName:
Full=DNA-directed RNA polymerase III subunit H; AltName:
Full=RNA polymerase III subunit 22.9 kDa subunit;
Short=RPC22.9
gi|24429623|gb|AAM18217.1| RNA polymerase III subunit RPC8 [Homo sapiens]
gi|47678449|emb|CAG30345.1| dJ347H13.5 [Homo sapiens]
gi|56789518|gb|AAH88367.1| Polymerase (RNA) III (DNA directed) polypeptide H (22.9kD) [Homo
sapiens]
gi|109451158|emb|CAK54440.1| POLR3H [synthetic construct]
gi|109451736|emb|CAK54739.1| POLR3H [synthetic construct]
gi|119580841|gb|EAW60437.1| polymerase (RNA) III (DNA directed) polypeptide H (22.9kD), isoform
CRA_a [Homo sapiens]
gi|119580843|gb|EAW60439.1| polymerase (RNA) III (DNA directed) polypeptide H (22.9kD), isoform
CRA_a [Homo sapiens]
gi|119580844|gb|EAW60440.1| polymerase (RNA) III (DNA directed) polypeptide H (22.9kD), isoform
CRA_a [Homo sapiens]
gi|119580845|gb|EAW60441.1| polymerase (RNA) III (DNA directed) polypeptide H (22.9kD), isoform
CRA_a [Homo sapiens]
gi|168270638|dbj|BAG10112.1| DNA-directed RNA polymerase III subunit RPC8 [synthetic construct]
gi|254071291|gb|ACT64405.1| polymerase (RNA) III (DNA directed) polypeptide H (22.9kD) protein
[synthetic construct]
gi|254071293|gb|ACT64406.1| polymerase (RNA) III (DNA directed) polypeptide H (22.9kD) protein
[synthetic construct]
gi|410227528|gb|JAA10983.1| polymerase (RNA) III (DNA directed) polypeptide H (22.9kD) [Pan
troglodytes]
gi|410257006|gb|JAA16470.1| polymerase (RNA) III (DNA directed) polypeptide H (22.9kD) [Pan
troglodytes]
gi|410300726|gb|JAA28963.1| polymerase (RNA) III (DNA directed) polypeptide H (22.9kD) [Pan
troglodytes]
gi|410352625|gb|JAA42916.1| polymerase (RNA) III (DNA directed) polypeptide H (22.9kD) [Pan
troglodytes]
Length = 204
Score = 135 bits (340), Expect = 9e-30, Method: Compositional matrix adjust.
Identities = 77/206 (37%), Positives = 114/206 (55%), Gaps = 19/206 (9%)
Query: 1 MFYLSKIEHTLRLPPHLLRLPLNEAIKLELENVFLDKVIANLGLCISIYDIKEIEGGFVY 60
MF L ++ T+R+PP LN++I EL +KV+ N+GLCI ++DI ++E +V+
Sbjct: 1 MFVLVEMVDTVRIPPWQFERKLNDSIAEELNKKLANKVVYNVGLCICLFDITKLEDAYVF 60
Query: 61 PGEGASTHTVKFRLVVFRPFVGEIIAAKLKESDANGLRLSLGFFEDIYVPSHLLPSPSRS 120
PG+GAS V FR VVF PF+ EI+ K+K G+ +SLGFF+DI +P L P++
Sbjct: 61 PGDGASHTKVHFRCVVFHPFLDEILIGKIKGCSPEGVHVSLGFFDDILIPPESLQQPAK- 119
Query: 121 EPDPYGRYEVKWIWEF----GDTKYVIDGLDEIKFRVLSVNY----PSIP------IEQA 166
+ E W+WE+ G +D +EI+FRV+ ++ P+ P
Sbjct: 120 ----FDEAEQVWVWEYETEEGAHDLYMDTGEEIRFRVVDESFVDTSPTGPSSADATTSSE 175
Query: 167 EGSKPFAPMVINGSIDYDGLGPVSWW 192
E K AP + GSI GLG +SWW
Sbjct: 176 ELPKKEAPYTLVGSISEPGLGLLSWW 201
>gi|146413070|ref|XP_001482506.1| hypothetical protein PGUG_05526 [Meyerozyma guilliermondii ATCC
6260]
Length = 194
Score = 135 bits (339), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 71/198 (35%), Positives = 114/198 (57%), Gaps = 11/198 (5%)
Query: 1 MFYLSKIEHTLRLPPHLLRLPLNEAIKLELENVFLDKVIANLGLCISIYDIKEIEGGFVY 60
MF LS++ +++PPH +P+NEA+ EL + +KVIANLGL ++++D+ EI G +
Sbjct: 1 MFILSEVSDIVKIPPHTFHIPINEAVTNELHKKYANKVIANLGLVVAVWDLLEIHDGQLK 60
Query: 61 PGEGASTHTVKFRLVVFRPFVGEIIAAKLKESDANGLRLSLGFFEDIYVPSHLLPSPSRS 120
PG+GAS V+FR VV++PFVGEI++ + + A G+++ + FF++I+VP +
Sbjct: 61 PGDGASFVKVRFRCVVWKPFVGEILSGWVTQCTAEGIKIGMRFFDEIFVPKNYFFENCEF 120
Query: 121 EPDPYGRYEVKWIWEFGD-TKYVIDGLDEIKFRV-----LSVNYPSIPIEQAEGSKPFAP 174
+P E W+W+ D T+ ID + ++FRV LS+ + E P
Sbjct: 121 KP-----VEKAWVWKPDDETELYIDVNERVRFRVEEEVFLSIKPRPTNQDNQEEDNKVPP 175
Query: 175 MVINGSIDYDGLGPVSWW 192
+ S DG+G VSWW
Sbjct: 176 YALIASCQTDGMGCVSWW 193
>gi|403282911|ref|XP_003932877.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC8 [Saimiri
boliviensis boliviensis]
Length = 204
Score = 135 bits (339), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 77/206 (37%), Positives = 114/206 (55%), Gaps = 19/206 (9%)
Query: 1 MFYLSKIEHTLRLPPHLLRLPLNEAIKLELENVFLDKVIANLGLCISIYDIKEIEGGFVY 60
MF L ++ T+R+PP LN++I EL +KV+ N+GLCI ++DI ++E +V+
Sbjct: 1 MFVLVEMVDTVRIPPWQFERKLNDSIAEELNKKLANKVVYNVGLCICLFDITKLEDAYVF 60
Query: 61 PGEGASTHTVKFRLVVFRPFVGEIIAAKLKESDANGLRLSLGFFEDIYVPSHLLPSPSRS 120
PG+GAS V FR VVF PF+ EI+ K+K G+ +SLGFF+DI +P L P++
Sbjct: 61 PGDGASHTKVHFRYVVFHPFLDEILIGKIKGCSPEGVHVSLGFFDDILIPPESLQQPAK- 119
Query: 121 EPDPYGRYEVKWIWEF----GDTKYVIDGLDEIKFRVLSVNY----PSIP------IEQA 166
+ E W+WE+ G +D +EI+FRV+ ++ P+ P
Sbjct: 120 ----FDEAEQVWVWEYETEEGAHDLYMDTGEEIRFRVVDESFVDTSPTGPSSAEATTSSE 175
Query: 167 EGSKPFAPMVINGSIDYDGLGPVSWW 192
E K AP + GSI GLG +SWW
Sbjct: 176 ELPKKEAPYTLMGSISEPGLGLLSWW 201
>gi|298204961|emb|CBI34268.3| unnamed protein product [Vitis vinifera]
Length = 101
Score = 134 bits (338), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 66/98 (67%), Positives = 79/98 (80%)
Query: 1 MFYLSKIEHTLRLPPHLLRLPLNEAIKLELENVFLDKVIANLGLCISIYDIKEIEGGFVY 60
MF+LS IEHTL+L PHLL LPL+EAIK ELE++FLDKVIANLGLCI + DI+ GFV+
Sbjct: 1 MFFLSLIEHTLQLSPHLLDLPLSEAIKGELESLFLDKVIANLGLCIFVNDIRSTACGFVF 60
Query: 61 PGEGASTHTVKFRLVVFRPFVGEIIAAKLKESDANGLR 98
G ST+TV+FRLV+FR FV EII AKL +S+ NGLR
Sbjct: 61 LGNSTSTYTVEFRLVMFRLFVKEIITAKLNKSNVNGLR 98
>gi|431900039|gb|ELK07974.1| DNA-directed RNA polymerase III subunit RPC8 [Pteropus alecto]
Length = 204
Score = 134 bits (338), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 79/207 (38%), Positives = 115/207 (55%), Gaps = 21/207 (10%)
Query: 1 MFYLSKIEHTLRLPPHLLRLPLNEAIKLELENVFLDKVIANLGLCISIYDIKEIEGGFVY 60
MF L ++ T+R PP LN++I EL +KV+ N+GLCI ++DI ++E +V+
Sbjct: 1 MFVLVEMVDTVRTPPWQFERKLNDSIAEELNKKLANKVVYNVGLCICLFDITKLEDAYVF 60
Query: 61 PGEGASTHTVKFRLVVFRPFVGEIIAAKLKESDANGLRLSLGFFEDIYVPSHLLPSPSRS 120
PG+GAS V FR VVF PF+ EI+ K+K G+ +SLGFF+DI +P L P++
Sbjct: 61 PGDGASHTKVHFRYVVFHPFLDEILIGKIKGCSPEGVHVSLGFFDDILIPPESLQQPAK- 119
Query: 121 EPDPYGRYEVKWIWEF----GDTKYVIDGLDEIKFRVLSVNY----PSIPIEQAEGS--- 169
+ E W+WE+ G +D +EI+FRV+ ++ PS P AE +
Sbjct: 120 ----FDEAEQVWVWEYETEEGAHDLYMDTGEEIRFRVVDESFVDTSPSGP-SSAEATASS 174
Query: 170 ----KPFAPMVINGSIDYDGLGPVSWW 192
K AP + GSI GLG +SWW
Sbjct: 175 EELPKKEAPYTLVGSISEPGLGLLSWW 201
>gi|388453623|ref|NP_001253541.1| DNA-directed RNA polymerase III subunit RPC8 [Macaca mulatta]
gi|402884366|ref|XP_003905657.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC8 [Papio
anubis]
gi|90077470|dbj|BAE88415.1| unnamed protein product [Macaca fascicularis]
gi|355563711|gb|EHH20273.1| hypothetical protein EGK_03090 [Macaca mulatta]
gi|355785028|gb|EHH65879.1| hypothetical protein EGM_02735 [Macaca fascicularis]
gi|380810200|gb|AFE76975.1| DNA-directed RNA polymerase III subunit RPC8 isoform a [Macaca
mulatta]
gi|383416259|gb|AFH31343.1| DNA-directed RNA polymerase III subunit RPC8 isoform a [Macaca
mulatta]
gi|384945610|gb|AFI36410.1| DNA-directed RNA polymerase III subunit RPC8 isoform a [Macaca
mulatta]
Length = 204
Score = 134 bits (338), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 77/206 (37%), Positives = 114/206 (55%), Gaps = 19/206 (9%)
Query: 1 MFYLSKIEHTLRLPPHLLRLPLNEAIKLELENVFLDKVIANLGLCISIYDIKEIEGGFVY 60
MF L ++ T+R+PP LN++I EL +KV+ N+GLCI ++DI ++E +V+
Sbjct: 1 MFVLVEMVDTVRIPPWQFERKLNDSIAEELNKKLANKVVYNVGLCICLFDITKLEDAYVF 60
Query: 61 PGEGASTHTVKFRLVVFRPFVGEIIAAKLKESDANGLRLSLGFFEDIYVPSHLLPSPSRS 120
PG+GAS V FR VVF PF+ EI+ K+K G+ +SLGFF+DI +P L P++
Sbjct: 61 PGDGASHTKVHFRYVVFHPFLDEILIGKIKGCSPEGVHVSLGFFDDILIPPESLQQPAK- 119
Query: 121 EPDPYGRYEVKWIWEF----GDTKYVIDGLDEIKFRVLSVNY----PSIP------IEQA 166
+ E W+WE+ G +D +EI+FRV+ ++ P+ P
Sbjct: 120 ----FDEAEQVWVWEYETEEGAHDLYMDTGEEIRFRVVDESFVDTSPTGPSSADATTSSE 175
Query: 167 EGSKPFAPMVINGSIDYDGLGPVSWW 192
E K AP + GSI GLG +SWW
Sbjct: 176 ELPKKEAPYTLVGSISEPGLGLLSWW 201
>gi|241570289|ref|XP_002402677.1| DNA-directed RNA polymerase subunit E', putative [Ixodes
scapularis]
gi|215502059|gb|EEC11553.1| DNA-directed RNA polymerase subunit E', putative [Ixodes
scapularis]
gi|442750295|gb|JAA67307.1| Putative dna-directed rna polymerase subunit e' [Ixodes ricinus]
Length = 200
Score = 134 bits (338), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 73/204 (35%), Positives = 118/204 (57%), Gaps = 17/204 (8%)
Query: 1 MFYLSKIEHTLRLPPHLLRLPLNEAIKLELENVFLDKVIANLGLCISIYDIKEIEGGFVY 60
MF +S++ +R+PP L RL N+AI +L +KV+ N+GLCI+++D+ +IE +
Sbjct: 1 MFVISEMSDNIRIPPWLFRLNPNDAIVEQLNRRLANKVVINVGLCIALFDVTKIEDSKIL 60
Query: 61 PGEGASTHTVKFRLVVFRPFVGEIIAAKLKESDANGLRLSLGFFEDIYVPSHLLPSPSRS 120
PG+G+ TV+FR VVFRPF+ E++ K++ G+ +S+GFF+DI +P L PSR
Sbjct: 61 PGDGSFHTTVEFRYVVFRPFMDEVLVGKIRSCSQEGVYVSMGFFDDILIPPDALQHPSR- 119
Query: 121 EPDPYGRYEVKWIWEF--GDTKY--VIDGLDEIKFRVLSVNY----PSIP----IEQAEG 168
+ E W+WE+ D K+ +D ++I+FRV++ + P P + + E
Sbjct: 120 ----FDEAEQLWVWEYESDDKKHDMFMDLGEQIRFRVVAETFVDTSPVGPEMAEMSENES 175
Query: 169 SKPFAPMVINGSIDYDGLGPVSWW 192
+ P + GSI GLG + WW
Sbjct: 176 KEKRIPYSLTGSISESGLGLLKWW 199
>gi|395820252|ref|XP_003783487.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC8 [Otolemur
garnettii]
Length = 361
Score = 134 bits (337), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 77/206 (37%), Positives = 114/206 (55%), Gaps = 19/206 (9%)
Query: 1 MFYLSKIEHTLRLPPHLLRLPLNEAIKLELENVFLDKVIANLGLCISIYDIKEIEGGFVY 60
MF L ++ T+R+PP LN++I EL +KV+ N+GLCI ++DI ++E +V+
Sbjct: 158 MFVLVEMVDTVRIPPWQFERKLNDSIAEELNKKLANKVVYNVGLCICLFDITKLEDAYVF 217
Query: 61 PGEGASTHTVKFRLVVFRPFVGEIIAAKLKESDANGLRLSLGFFEDIYVPSHLLPSPSRS 120
PG+GAS V FR VVF PF+ EI+ K+K G+ +SLGFF+DI +P L P++
Sbjct: 218 PGDGASHTKVHFRYVVFHPFLDEILIGKIKGCSPEGVHVSLGFFDDILIPPESLQQPAK- 276
Query: 121 EPDPYGRYEVKWIWEF----GDTKYVIDGLDEIKFRVLSVNY----PSIP------IEQA 166
+ E W+WE+ G +D +EI+FRV+ ++ P+ P
Sbjct: 277 ----FDDAEQVWVWEYETEEGAHDLYMDTGEEIRFRVVDESFVDTSPTGPSSAEATTSSE 332
Query: 167 EGSKPFAPMVINGSIDYDGLGPVSWW 192
E K AP + GSI GLG +SWW
Sbjct: 333 EQPKKEAPYTLVGSISEPGLGLLSWW 358
>gi|325182910|emb|CCA17366.1| DNAdirected RNA polymerase III subunit RPC8 putative [Albugo
laibachii Nc14]
Length = 228
Score = 134 bits (336), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 72/230 (31%), Positives = 118/230 (51%), Gaps = 43/230 (18%)
Query: 1 MFYLSKIEHTLRLPPHLLRLPLNEAIKLELENVFLDKVIANLGLCISIYDIKEIEGGFVY 60
MF L++I + + P L +K E++ F +KVIA++GLCIS+YD I ++
Sbjct: 1 MFVLARISDVIAIHPMLFDGDYTRVLKEEIDKKFCNKVIADVGLCISVYDFIAIGDALIH 60
Query: 61 PGEGASTHTVKFRLVVFRPFVGEIIAAKLKESDANGLRLSLGFFEDIYVPSHLLPSPSRS 120
P EG S V+FR+VVFRPF+GE++ K+ + N +R+++ F +DI +PS+ L +PS
Sbjct: 61 PSEGDSHTQVEFRMVVFRPFIGEVLKGKILSCNENHIRITMEFMQDILIPSYALQTPSH- 119
Query: 121 EPDPYGRYEVKWIWEFGDT--KYVIDGLDEIKFRVLSVNYPSI----------------- 161
+ YE W+W F ++ K+ +D +E++FRV +VN+ +
Sbjct: 120 ----FDTYERLWVWTFTESGEKFHMDLNEEVRFRVTNVNFTQVHKTAKGMQATTIESTDK 175
Query: 162 -------------------PIEQAEGSKPFAPMVINGSIDYDGLGPVSWW 192
++ ++ + M I G+ID DGLG SWW
Sbjct: 176 DGKSTLKGGNIDDRKRRLSSVDLSDNDPTPSAMQILGTIDEDGLGLTSWW 225
>gi|449283297|gb|EMC89974.1| DNA-directed RNA polymerase III subunit RPC8 [Columba livia]
Length = 206
Score = 134 bits (336), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 75/208 (36%), Positives = 113/208 (54%), Gaps = 21/208 (10%)
Query: 1 MFYLSKIEHTLRLPPHLLRLPLNEAIKLELENVFLDKVIANLGLCISIYDIKEIEGGFVY 60
MF L ++ T+R+PP LNE+I EL +KV+ N+GLCI +YDI ++E +++
Sbjct: 1 MFVLVEMTDTVRIPPWQFERKLNESIAEELNKKLANKVVYNVGLCICLYDITKLEDSYIF 60
Query: 61 PGEGASTHTVKFRLVVFRPFVGEIIAAKLKESDANGLRLSLGFFEDIYVPSHLLPSPSRS 120
PG+GAS V FR VVF PF+ EI+ ++K +G+ +S+GFF+DI +P L P++
Sbjct: 61 PGDGASHTKVHFRYVVFHPFLDEILIGQIKSCSQDGVHVSIGFFDDIVIPPESLQQPAK- 119
Query: 121 EPDPYGRYEVKWIWEF----GDTKYVIDGLDEIKFRVLSVNY----PSIPIEQAEG---- 168
+ E W+WE+ G +D +EI+FRV+ + P+ P
Sbjct: 120 ----FDEAEQVWVWEYETEEGAHDLYMDIGEEIRFRVVDETFVDTSPTGPSSAEASTSSA 175
Query: 169 ----SKPFAPMVINGSIDYDGLGPVSWW 192
K AP + GSI GLG +SWW
Sbjct: 176 TEEVQKKEAPYTLVGSISEPGLGLLSWW 203
>gi|344296182|ref|XP_003419788.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC8-like
isoform 1 [Loxodonta africana]
Length = 204
Score = 134 bits (336), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 76/206 (36%), Positives = 115/206 (55%), Gaps = 19/206 (9%)
Query: 1 MFYLSKIEHTLRLPPHLLRLPLNEAIKLELENVFLDKVIANLGLCISIYDIKEIEGGFVY 60
MF L ++ T+R+PP LN++I EL +KV+ N+GLCI ++DI ++E +V+
Sbjct: 1 MFVLVEMVDTVRIPPWQFERKLNDSIAEELNKKLANKVVYNVGLCICLFDITKLEDAYVF 60
Query: 61 PGEGASTHTVKFRLVVFRPFVGEIIAAKLKESDANGLRLSLGFFEDIYVPSHLLPSPSRS 120
PG+GAS V FR VVFRPF+ E++ K+K G+ +SLGFF+DI +P L P++
Sbjct: 61 PGDGASHTKVHFRYVVFRPFLDEVLIGKIKGCSPEGVHVSLGFFDDILIPPESLQQPAK- 119
Query: 121 EPDPYGRYEVKWIWEF----GDTKYVIDGLDEIKFRVLSVNY----PSIPIEQAEGS--- 169
+ E W+WE+ G +D +EI+FRV+ ++ P+ P S
Sbjct: 120 ----FDEAEQVWVWEYETEEGAHDLYMDTGEEIRFRVVDESFVDTSPTGPSSAEATSSSE 175
Query: 170 ---KPFAPMVINGSIDYDGLGPVSWW 192
+ AP + GSI GLG +SWW
Sbjct: 176 EPPRKEAPYTLAGSISEPGLGLLSWW 201
>gi|327272738|ref|XP_003221141.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC8-like
[Anolis carolinensis]
Length = 206
Score = 133 bits (335), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 75/208 (36%), Positives = 110/208 (52%), Gaps = 21/208 (10%)
Query: 1 MFYLSKIEHTLRLPPHLLRLPLNEAIKLELENVFLDKVIANLGLCISIYDIKEIEGGFVY 60
MF L ++ T+R+PP LN+AI EL +KV+ N+GLCI +YDI ++E +++
Sbjct: 1 MFVLVEMTDTVRIPPWQFERKLNDAITEELNKKLANKVVYNVGLCICLYDITKLEDSYIF 60
Query: 61 PGEGASTHTVKFRLVVFRPFVGEIIAAKLKESDANGLRLSLGFFEDIYVPSHLLPSPSRS 120
PG+GAS V FR VVF PF+ EI+ ++K G+ +SLGFF+DI +P L P++
Sbjct: 61 PGDGASHTKVHFRYVVFHPFLDEILVGEIKGCSLEGVHVSLGFFDDIIIPPESLQQPAK- 119
Query: 121 EPDPYGRYEVKWIWEF----GDTKYVIDGLDEIKFRVLSVNYPSIP------------IE 164
+ E W+WE+ G +D +EI+FRV+ +
Sbjct: 120 ----FDEAEQVWVWEYETEEGAHDLYMDRGEEIRFRVVDETFIDTSPTGPSSSEPSTSSA 175
Query: 165 QAEGSKPFAPMVINGSIDYDGLGPVSWW 192
E K AP + GSI GLG +SWW
Sbjct: 176 TEEVQKKEAPYTLVGSISEPGLGLLSWW 203
>gi|410925771|ref|XP_003976353.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC8-like
[Takifugu rubripes]
Length = 215
Score = 133 bits (334), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 78/218 (35%), Positives = 115/218 (52%), Gaps = 31/218 (14%)
Query: 1 MFYLSKIEHTLRLPPHLLRLPLNEAIKLELENVFLDKVIANLGLCISIYDIKEIEGGFVY 60
MF L ++ T+R+PP + PLNEAI EL +KV+ N+GLCI +YD+ ++E +++
Sbjct: 1 MFVLVEMVDTVRIPPWDFQRPLNEAIAEELNKKLANKVVYNVGLCICLYDVTKLEDSYIF 60
Query: 61 PGEGASTHTVKFRLVVFRPFVGEIIAAKLKESDANGLRLSLGFFEDIYVPSHLLPSPSRS 120
PG+GAS V FR VVF PF+ EI+ K+K G+ +++GFF+DI +P L P++
Sbjct: 61 PGDGASHTKVHFRYVVFHPFLEEILTGKIKYCSQEGVHVTMGFFDDILIPPESLQQPAK- 119
Query: 121 EPDPYGRYEVKWIWEF----GDTKYVIDGLDEIKFRVL------------SVNYPSIPIE 164
+ E W+WE+ G +D +EI+FRV S P +
Sbjct: 120 ----FDEAEQVWVWEYETDEGAHDLYMDQGEEIRFRVTDEVFVDTSPTGPSAAEKEAPAQ 175
Query: 165 --QAEGSKP--------FAPMVINGSIDYDGLGPVSWW 192
QA S P AP + G+I GLG +SWW
Sbjct: 176 PGQATTSAPKEENKEKKEAPYTLIGTICEPGLGLLSWW 213
>gi|448519252|ref|XP_003868045.1| Rpc25 protein [Candida orthopsilosis Co 90-125]
gi|380352384|emb|CCG22610.1| Rpc25 protein [Candida orthopsilosis]
Length = 195
Score = 132 bits (332), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 72/199 (36%), Positives = 108/199 (54%), Gaps = 12/199 (6%)
Query: 1 MFYLSKIEHTLRLPPHLLRLPLNEAIKLELENVFLDKVIANLGLCISIYDIKEIEGGFVY 60
MF LS++ +R+PPH +P+ AI EL + +KV+ LG+ I+I+D+ +I+ G +
Sbjct: 1 MFILSEVNDLIRIPPHTFNIPIQHAITDELNKKYANKVVPKLGVVITIWDLLDIKDGLLK 60
Query: 61 PGEGASTHTVKFRLVVFRPFVGEIIAAKLKESDANGLRLSLGFFEDIYVPSHLLPSPSRS 120
PG+G S V+FR +VF+PFVGE++ + E A G+++ L FF+DI++P+ L
Sbjct: 61 PGDGGSYVEVRFRCIVFKPFVGEVLTGWVTECKATGIKVRLEFFDDIWIPADYL-----F 115
Query: 121 EPDPYGRYEVKWIWEFGDTKYVIDGLDEIKFRV-LSVNYPSIPIEQAEG------SKPFA 173
E Y E W+W DT ID ++I+F+V V Y P E +
Sbjct: 116 EDCEYRESESAWVWNSADTDLFIDVDEKIRFKVEKEVFYNVKPKSSNEAIGIEEPTNKLP 175
Query: 174 PMVINGSIDYDGLGPVSWW 192
P I S GLG VSWW
Sbjct: 176 PYSIIASCQLSGLGCVSWW 194
>gi|27229271|ref|NP_084505.2| DNA-directed RNA polymerase III subunit RPC8 [Mus musculus]
gi|187937020|ref|NP_001120767.1| DNA-directed RNA polymerase III subunit RPC8 [Rattus norvegicus]
gi|29427995|sp|Q9D2C6.2|RPC8_MOUSE RecName: Full=DNA-directed RNA polymerase III subunit RPC8;
AltName: Full=DNA-directed RNA polymerase III subunit H;
AltName: Full=RNA polymerase III subunit C7
gi|14789799|gb|AAH10793.1| Polymerase (RNA) III (DNA directed) polypeptide H [Mus musculus]
gi|26387053|dbj|BAB31893.2| unnamed protein product [Mus musculus]
gi|148672603|gb|EDL04550.1| polymerase (RNA) III (DNA directed) polypeptide H, isoform CRA_d
[Mus musculus]
gi|149065818|gb|EDM15691.1| polymerase (RNA) III (DNA directed) polypeptide H (predicted),
isoform CRA_a [Rattus norvegicus]
gi|149065819|gb|EDM15692.1| polymerase (RNA) III (DNA directed) polypeptide H (predicted),
isoform CRA_a [Rattus norvegicus]
gi|149065820|gb|EDM15693.1| polymerase (RNA) III (DNA directed) polypeptide H (predicted),
isoform CRA_a [Rattus norvegicus]
gi|149065822|gb|EDM15695.1| polymerase (RNA) III (DNA directed) polypeptide H (predicted),
isoform CRA_a [Rattus norvegicus]
gi|187469207|gb|AAI67088.1| Polr3h protein [Rattus norvegicus]
Length = 204
Score = 132 bits (332), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 77/206 (37%), Positives = 114/206 (55%), Gaps = 19/206 (9%)
Query: 1 MFYLSKIEHTLRLPPHLLRLPLNEAIKLELENVFLDKVIANLGLCISIYDIKEIEGGFVY 60
MF L ++ T+R+PP LN++I EL +KV+ N+GLCI ++DI ++E +V+
Sbjct: 1 MFVLVEMVDTVRIPPWQFERKLNDSIAEELNKKLANKVVYNVGLCICLFDITKLEDAYVF 60
Query: 61 PGEGASTHTVKFRLVVFRPFVGEIIAAKLKESDANGLRLSLGFFEDIYVPSHLLPSPSRS 120
PG+GAS V FR VVF PF+ EI+ K+K G+ +SLGFF+DI +P L P++
Sbjct: 61 PGDGASHTKVHFRYVVFHPFLDEILIGKIKGCSPEGVHVSLGFFDDILIPPESLQQPAK- 119
Query: 121 EPDPYGRYEVKWIWEF----GDTKYVIDGLDEIKFRVLSVNY----PSIPIEQAEGS--- 169
+ E W+WE+ G +D +EI+FRV+ ++ P+ P S
Sbjct: 120 ----FDEAEQVWVWEYETEEGAHDLYMDTGEEIRFRVVDESFVDTSPTGPSSAEAASSSE 175
Query: 170 ---KPFAPMVINGSIDYDGLGPVSWW 192
K AP + GSI GLG +SWW
Sbjct: 176 ELPKKEAPYTLVGSISEPGLGLLSWW 201
>gi|410965705|ref|XP_003989382.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC8 isoform 1
[Felis catus]
Length = 204
Score = 132 bits (332), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 77/206 (37%), Positives = 114/206 (55%), Gaps = 19/206 (9%)
Query: 1 MFYLSKIEHTLRLPPHLLRLPLNEAIKLELENVFLDKVIANLGLCISIYDIKEIEGGFVY 60
MF L ++ T+R+PP LN++I EL +KV+ N+GLCI ++DI ++E +V+
Sbjct: 1 MFVLVEMVDTVRIPPWQFERKLNDSIAEELNKKLANKVVYNVGLCICLFDITKLEDAYVF 60
Query: 61 PGEGASTHTVKFRLVVFRPFVGEIIAAKLKESDANGLRLSLGFFEDIYVPSHLLPSPSRS 120
PG+GAS V FR VVF PF+ EI+ K+K G+ +SLGFF+DI +P L P++
Sbjct: 61 PGDGASHTKVHFRYVVFHPFLDEILIGKIKGCSPEGVHVSLGFFDDILIPPESLQQPAK- 119
Query: 121 EPDPYGRYEVKWIWEF----GDTKYVIDGLDEIKFRVLSVNY----PSIPIEQAEGS--- 169
+ E W+WE+ G +D +EI+FRV+ ++ P+ P S
Sbjct: 120 ----FDEAEQVWVWEYETEEGAHDLYMDTGEEIRFRVVDESFVDTSPTGPSSAEATSSSE 175
Query: 170 ---KPFAPMVINGSIDYDGLGPVSWW 192
K AP + GSI GLG +SWW
Sbjct: 176 ELPKKEAPYTLVGSISEPGLGLLSWW 201
>gi|74220193|dbj|BAE31279.1| unnamed protein product [Mus musculus]
Length = 204
Score = 132 bits (331), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 77/206 (37%), Positives = 114/206 (55%), Gaps = 19/206 (9%)
Query: 1 MFYLSKIEHTLRLPPHLLRLPLNEAIKLELENVFLDKVIANLGLCISIYDIKEIEGGFVY 60
MF L ++ T+R+PP LN++I EL +KV+ N+GLCI ++DI ++E +V+
Sbjct: 1 MFVLVEMVDTVRIPPWQFERKLNDSIAEELNKKLANKVVYNVGLCICLFDITKLEDAYVF 60
Query: 61 PGEGASTHTVKFRLVVFRPFVGEIIAAKLKESDANGLRLSLGFFEDIYVPSHLLPSPSRS 120
PG+GAS V FR VVF PF+ EI+ K+K G+ +SLGFF+DI +P L P++
Sbjct: 61 PGDGASHTKVHFRYVVFHPFLDEILIGKIKGCSPEGVHVSLGFFDDILIPPESLQQPAK- 119
Query: 121 EPDPYGRYEVKWIWEF----GDTKYVIDGLDEIKFRVLSVNY----PSIPIEQAEGS--- 169
+ E W+WE+ G +D +EI+FRV+ ++ P+ P S
Sbjct: 120 ----FDEAEQVWVWEYETGEGAHDLYMDTGEEIRFRVVDESFVDTSPTGPSSAEAASSSE 175
Query: 170 ---KPFAPMVINGSIDYDGLGPVSWW 192
K AP + GSI GLG +SWW
Sbjct: 176 ELPKKEAPYTLVGSISEPGLGLLSWW 201
>gi|355712777|gb|AES04462.1| polymerase III polypeptide H [Mustela putorius furo]
Length = 203
Score = 132 bits (331), Expect = 9e-29, Method: Compositional matrix adjust.
Identities = 77/206 (37%), Positives = 114/206 (55%), Gaps = 19/206 (9%)
Query: 1 MFYLSKIEHTLRLPPHLLRLPLNEAIKLELENVFLDKVIANLGLCISIYDIKEIEGGFVY 60
MF L ++ T+R+PP LN++I EL +KV+ N+GLCI ++DI ++E +V+
Sbjct: 1 MFVLVEMVDTVRIPPWQFERKLNDSIAEELNKKLANKVVYNVGLCICLFDITKLEDAYVF 60
Query: 61 PGEGASTHTVKFRLVVFRPFVGEIIAAKLKESDANGLRLSLGFFEDIYVPSHLLPSPSRS 120
PG+GAS V FR VVF PF+ EI+ K+K G+ +SLGFF+DI +P L P++
Sbjct: 61 PGDGASHTKVHFRYVVFHPFLDEILIGKIKGCSPEGVHVSLGFFDDILIPPESLQQPAK- 119
Query: 121 EPDPYGRYEVKWIWEF----GDTKYVIDGLDEIKFRVLSVNY----PSIPIEQAEGS--- 169
+ E W+WE+ G +D +EI+FRV+ ++ P+ P S
Sbjct: 120 ----FDEAEQVWVWEYETEEGAHDLYMDTGEEIRFRVVDESFVDTSPTGPSSAEATSSSE 175
Query: 170 ---KPFAPMVINGSIDYDGLGPVSWW 192
K AP + GSI GLG +SWW
Sbjct: 176 ELPKKEAPYTLVGSISEPGLGLLSWW 201
>gi|149743078|ref|XP_001502570.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC8-like
isoform 1 [Equus caballus]
Length = 204
Score = 132 bits (331), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 77/206 (37%), Positives = 114/206 (55%), Gaps = 19/206 (9%)
Query: 1 MFYLSKIEHTLRLPPHLLRLPLNEAIKLELENVFLDKVIANLGLCISIYDIKEIEGGFVY 60
MF L ++ T+R+PP LN++I EL +KV+ N+GLCI ++DI ++E +V+
Sbjct: 1 MFVLVEMVDTVRIPPWQFERKLNDSIAEELNKKLANKVVYNVGLCICLFDITKLEDAYVF 60
Query: 61 PGEGASTHTVKFRLVVFRPFVGEIIAAKLKESDANGLRLSLGFFEDIYVPSHLLPSPSRS 120
PG+GAS V FR VVF PF+ EI+ K+K G+ +SLGFF+DI +P L P++
Sbjct: 61 PGDGASHTKVHFRYVVFHPFLDEILIGKIKGCSPEGVHVSLGFFDDILIPPESLQQPAK- 119
Query: 121 EPDPYGRYEVKWIWEF----GDTKYVIDGLDEIKFRVLSVNY----PSIPIEQAEGS--- 169
+ E W+WE+ G +D +EI+FRV+ ++ P+ P S
Sbjct: 120 ----FDDTEQVWVWEYETEEGAHDLYMDTGEEIRFRVVDESFVDTSPTGPSSAEATSSSE 175
Query: 170 ---KPFAPMVINGSIDYDGLGPVSWW 192
K AP + GSI GLG +SWW
Sbjct: 176 ELPKKEAPYTLVGSISEPGLGLLSWW 201
>gi|354544030|emb|CCE40752.1| hypothetical protein CPAR2_107870 [Candida parapsilosis]
Length = 195
Score = 131 bits (330), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 72/199 (36%), Positives = 109/199 (54%), Gaps = 12/199 (6%)
Query: 1 MFYLSKIEHTLRLPPHLLRLPLNEAIKLELENVFLDKVIANLGLCISIYDIKEIEGGFVY 60
MF LS+I +R+PPH +P+ AI EL + +KV+ LG+ I+I+D+ +I+ G +
Sbjct: 1 MFILSEINDLIRIPPHTFNIPIQHAITDELNKKYANKVVPKLGVVITIWDLLDIKDGLLK 60
Query: 61 PGEGASTHTVKFRLVVFRPFVGEIIAAKLKESDANGLRLSLGFFEDIYVPSHLLPSPSRS 120
PG+G S V+FR +VF+PFVGE++ + E A G+++ L FF+DI++P+ L
Sbjct: 61 PGDGGSYVEVRFRCIVFKPFVGEVLTGWVTECKATGIKVRLEFFDDIWIPADYL-----F 115
Query: 121 EPDPYGRYEVKWIWEFGDTKYVIDGLDEIKFRV-LSVNYPSIPIEQAEG------SKPFA 173
E + E W+W DT+ ID ++I+F+V V Y P E +
Sbjct: 116 EDCEFKESESAWVWNSADTELFIDVDEKIRFKVEKEVFYNVKPKSSNEAIGIEEPANKVP 175
Query: 174 PMVINGSIDYDGLGPVSWW 192
P I S GLG VSWW
Sbjct: 176 PYSIIASCQLSGLGCVSWW 194
>gi|301787829|ref|XP_002929328.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC8-like
isoform 1 [Ailuropoda melanoleuca]
Length = 204
Score = 131 bits (330), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 77/206 (37%), Positives = 114/206 (55%), Gaps = 19/206 (9%)
Query: 1 MFYLSKIEHTLRLPPHLLRLPLNEAIKLELENVFLDKVIANLGLCISIYDIKEIEGGFVY 60
MF L ++ T+R+PP LN++I EL +KV+ N+GLCI ++DI ++E +V+
Sbjct: 1 MFVLVEMVDTVRIPPWQFERKLNDSIAEELNKKLANKVMYNVGLCICLFDITKLEDAYVF 60
Query: 61 PGEGASTHTVKFRLVVFRPFVGEIIAAKLKESDANGLRLSLGFFEDIYVPSHLLPSPSRS 120
PG+GAS V FR VVF PF+ EI+ K+K G+ +SLGFF+DI +P L P++
Sbjct: 61 PGDGASHTKVHFRYVVFHPFLDEILIGKIKGCSPEGVHVSLGFFDDILIPPESLQQPAK- 119
Query: 121 EPDPYGRYEVKWIWEF----GDTKYVIDGLDEIKFRVLSVNY----PSIPIEQAEGS--- 169
+ E W+WE+ G +D +EI+FRV+ ++ P+ P S
Sbjct: 120 ----FDEAEQVWVWEYETEEGAHDLYMDTGEEIRFRVVDESFVDTSPTGPSSAEAMSSSE 175
Query: 170 ---KPFAPMVINGSIDYDGLGPVSWW 192
K AP + GSI GLG +SWW
Sbjct: 176 ELPKKEAPYTLVGSISEPGLGLLSWW 201
>gi|390458879|ref|XP_002743853.2| PREDICTED: DNA-directed RNA polymerase III subunit RPC8 [Callithrix
jacchus]
Length = 273
Score = 131 bits (330), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 76/206 (36%), Positives = 113/206 (54%), Gaps = 19/206 (9%)
Query: 1 MFYLSKIEHTLRLPPHLLRLPLNEAIKLELENVFLDKVIANLGLCISIYDIKEIEGGFVY 60
MF L ++ T+R+PP LN++I EL +KV+ N+GLCI ++DI ++E +V+
Sbjct: 70 MFVLVEMVDTVRIPPWQFERKLNDSIAEELNKKLANKVVYNVGLCICLFDITKLEDAYVF 129
Query: 61 PGEGASTHTVKFRLVVFRPFVGEIIAAKLKESDANGLRLSLGFFEDIYVPSHLLPSPSRS 120
PG+GAS V FR VVF PF+ EI+ K+K G+ +SL FF+DI +P L P++
Sbjct: 130 PGDGASHTKVHFRYVVFHPFLDEILIGKIKGCSPEGVHVSLDFFDDILIPPESLQQPAK- 188
Query: 121 EPDPYGRYEVKWIWEF----GDTKYVIDGLDEIKFRVLSVNY----PSIP------IEQA 166
+ E W+WE+ G +D +EI+FRV+ ++ P+ P
Sbjct: 189 ----FDEAEQVWVWEYETEEGAHDLYMDTGEEIRFRVVDESFVDTSPTGPSSADATTSSE 244
Query: 167 EGSKPFAPMVINGSIDYDGLGPVSWW 192
E K AP + GSI GLG +SWW
Sbjct: 245 ELPKKEAPYTLVGSISEPGLGLLSWW 270
>gi|426225828|ref|XP_004007063.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC8 isoform 1
[Ovis aries]
Length = 204
Score = 131 bits (330), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 76/206 (36%), Positives = 114/206 (55%), Gaps = 19/206 (9%)
Query: 1 MFYLSKIEHTLRLPPHLLRLPLNEAIKLELENVFLDKVIANLGLCISIYDIKEIEGGFVY 60
MF L ++ T+R+PP LN++I EL +KV+ N+GLCI ++DI ++E +V+
Sbjct: 1 MFVLVEMVDTVRIPPWQFERKLNDSIAEELNKKLANKVVYNVGLCICLFDITKLEDAYVF 60
Query: 61 PGEGASTHTVKFRLVVFRPFVGEIIAAKLKESDANGLRLSLGFFEDIYVPSHLLPSPSRS 120
PG+GAS V FR VVF PF+ EI+ K+K G+ +SLGFF+DI +P L P++
Sbjct: 61 PGDGASHTKVHFRYVVFHPFLDEILIGKIKGCSPEGVHVSLGFFDDILIPPESLQQPAK- 119
Query: 121 EPDPYGRYEVKWIWEF----GDTKYVIDGLDEIKFRVLSVNY----PSIPIEQAEGS--- 169
+ E W+WE+ G +D +E++FRV+ ++ P+ P S
Sbjct: 120 ----FDEAEQVWVWEYETEEGAHDLYMDIGEEVRFRVVDESFVDTSPTGPSSAEATSSSE 175
Query: 170 ---KPFAPMVINGSIDYDGLGPVSWW 192
K AP + GSI GLG +SWW
Sbjct: 176 ELPKKAAPYTLMGSISEPGLGLLSWW 201
>gi|332231333|ref|XP_003264851.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC8 isoform 1
[Nomascus leucogenys]
gi|441617712|ref|XP_004088468.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC8 [Nomascus
leucogenys]
Length = 204
Score = 131 bits (330), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 76/206 (36%), Positives = 113/206 (54%), Gaps = 19/206 (9%)
Query: 1 MFYLSKIEHTLRLPPHLLRLPLNEAIKLELENVFLDKVIANLGLCISIYDIKEIEGGFVY 60
MF L ++ T+R+ P LN++I EL +KV+ N+GLCI ++DI ++E +V+
Sbjct: 1 MFVLVEMVDTVRISPWQFERKLNDSIAEELNKKLANKVVYNVGLCICLFDITKLEDAYVF 60
Query: 61 PGEGASTHTVKFRLVVFRPFVGEIIAAKLKESDANGLRLSLGFFEDIYVPSHLLPSPSRS 120
PG+GAS V FR VVF PF+ EI+ K+K G+ +SLGFF+DI +P L P++
Sbjct: 61 PGDGASHTKVHFRYVVFHPFLDEILIGKIKGCSPEGVHVSLGFFDDILIPPESLQQPAK- 119
Query: 121 EPDPYGRYEVKWIWEF----GDTKYVIDGLDEIKFRVLSVNY----PSIP------IEQA 166
+ E W+WE+ G +D +EI+FRV+ ++ P+ P
Sbjct: 120 ----FDEAEQVWVWEYETEEGAHDLYMDTGEEIRFRVVDESFVDTSPTGPSSADATASSE 175
Query: 167 EGSKPFAPMVINGSIDYDGLGPVSWW 192
E K AP + GSI GLG +SWW
Sbjct: 176 ELPKKEAPYTLVGSISEPGLGLLSWW 201
>gi|346470681|gb|AEO35185.1| hypothetical protein [Amblyomma maculatum]
Length = 198
Score = 131 bits (329), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 71/202 (35%), Positives = 114/202 (56%), Gaps = 15/202 (7%)
Query: 1 MFYLSKIEHTLRLPPHLLRLPLNEAIKLELENVFLDKVIANLGLCISIYDIKEIEGGFVY 60
MF +S++ ++R+PP L RL N+AI +L +KV+ N+GLCI+++DI IE +
Sbjct: 1 MFVISEMSDSIRIPPWLFRLNPNDAIVEQLNRRLANKVVINVGLCIALFDITRIEDSKIL 60
Query: 61 PGEGASTHTVKFRLVVFRPFVGEIIAAKLKESDANGLRLSLGFFEDIYVPSHLLPSPSRS 120
PG+G+ TV+FR VVFRPF+ E++ K++ G+ +S+GFF+DI + L PSR
Sbjct: 61 PGDGSFHTTVQFRYVVFRPFMDEVLVGKIRSCSQEGVYVSMGFFDDILITPDGLQHPSR- 119
Query: 121 EPDPYGRYEVKWIWEF----GDTKYVIDGLDEIKFRVLSVNY----PSIP--IEQAEGSK 170
+ E W+W++ G +D ++I+FRV+ + P P E+ + +
Sbjct: 120 ----FDEAEQLWVWQYESEDGKHDMFMDLGEQIRFRVVGEAFVDTSPGGPEAAEKPDAEE 175
Query: 171 PFAPMVINGSIDYDGLGPVSWW 192
P + GSI GLG + WW
Sbjct: 176 RHVPYSLTGSISESGLGLLKWW 197
>gi|307185496|gb|EFN71480.1| DNA-directed RNA polymerase III subunit RPC8 [Camponotus
floridanus]
Length = 204
Score = 131 bits (329), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 68/206 (33%), Positives = 115/206 (55%), Gaps = 19/206 (9%)
Query: 1 MFYLSKIEHTLRLPPHLLRLPLNEAIKLELENVFLDKVIANLGLCISIYDIKEIEGGFVY 60
MF L++++ T+R+ P + LN+ + EL +KV ++GLCI ++DI +IE +++
Sbjct: 1 MFVLAELKDTVRILPSNFKYKLNDVVADELNRKLANKVYKDVGLCIVLHDITKIEESYIF 60
Query: 61 PGEGASTHTVKFRLVVFRPFVGEIIAAKLKESDANGLRLSLGFFEDIYVPSHLLPSPSRS 120
PG+GAS V FR +VFRP++ EI+ K++ S + G+ ++LGFFEDI +P H L PS
Sbjct: 61 PGDGASHTKVTFRFIVFRPWIEEILIGKVRSSSSEGVHVTLGFFEDIIIPPHKLQHPSH- 119
Query: 121 EPDPYGRYEVKWIWEF-----GDTKYVIDGLDEIKFRVLSVNYPSIPIEQAEGSKP---- 171
+ + + W W + + ++ D I+FRV+ + P+ ++
Sbjct: 120 ----FNQTQQMWFWVYKTEDGTEHNLYMETGDAIRFRVVEEIFAETPLPSTVNTRDVSEI 175
Query: 172 -----FAPMVINGSIDYDGLGPVSWW 192
AP +++GSID GLG + WW
Sbjct: 176 PETNNVAPYILHGSIDEPGLGLLIWW 201
>gi|198421693|ref|XP_002128691.1| PREDICTED: similar to KIAA1665 protein isoform 1 [Ciona
intestinalis]
Length = 205
Score = 131 bits (329), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 71/207 (34%), Positives = 113/207 (54%), Gaps = 20/207 (9%)
Query: 1 MFYLSKIEHTLRLPPHLLRLPLNEAIKLELENVFLDKVIANLGLCISIYDIKEIEGGFVY 60
MF L +++ T+++ P L + LN+A+K+EL +KV+ N+G+CI ++DI + E +++
Sbjct: 1 MFILVEMKDTVKVEPWLFNVNLNDAVKVELNRRLANKVVYNIGVCICLFDILKYEDSYIF 60
Query: 61 PGEGASTHTVKFRLVVFRPFVGEIIAAKLKESDANGLRLSLGFFEDIYVPSHLLPSPSRS 120
PG+GAS V FR VVFRPFV E++ K+K G+ +SLGFF+DI +P L PS+
Sbjct: 61 PGDGASHTKVHFRCVVFRPFVDEVLIGKIKGCSQEGVTVSLGFFDDILIPPESLQQPSK- 119
Query: 121 EPDPYGRYEVKWIWEF----GDTKYVIDGLDEIKFRVLSVNYP-SIPI----------EQ 165
+ E W+WE+ G +D + I+ RV+ + + P+ +
Sbjct: 120 ----FDESEQVWVWEYETDEGTHDLFMDVNEPIRLRVVDETFTDTTPMSAPPTTATTSTE 175
Query: 166 AEGSKPFAPMVINGSIDYDGLGPVSWW 192
KP P +I I GLG + WW
Sbjct: 176 VASKKPTIPYLIKAVISEPGLGLLCWW 202
>gi|296486979|tpg|DAA29092.1| TPA: DNA-directed RNA polymerase III subunit RPC8 [Bos taurus]
gi|440893626|gb|ELR46323.1| DNA-directed RNA polymerase III subunit RPC8 [Bos grunniens mutus]
Length = 204
Score = 131 bits (329), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 76/206 (36%), Positives = 114/206 (55%), Gaps = 19/206 (9%)
Query: 1 MFYLSKIEHTLRLPPHLLRLPLNEAIKLELENVFLDKVIANLGLCISIYDIKEIEGGFVY 60
MF L ++ T+R+PP LN++I EL +KV+ N+GLCI ++DI ++E +V+
Sbjct: 1 MFVLVEMVDTVRIPPWQFERKLNDSIAEELNKKLANKVVYNVGLCICLFDITKLEDAYVF 60
Query: 61 PGEGASTHTVKFRLVVFRPFVGEIIAAKLKESDANGLRLSLGFFEDIYVPSHLLPSPSRS 120
PG+GAS V FR VVF PF+ EI+ K+K G+ +SLGFF+DI +P L P++
Sbjct: 61 PGDGASHTKVHFRYVVFHPFLDEILIGKIKGCSPEGVHVSLGFFDDILIPPESLQQPAK- 119
Query: 121 EPDPYGRYEVKWIWEF----GDTKYVIDGLDEIKFRVLSVNY----PSIPIEQAEGS--- 169
+ E W+WE+ G +D +E++FRV+ ++ P+ P S
Sbjct: 120 ----FDEAEQVWVWEYETEEGAHDLYMDIGEEVRFRVVDESFVDTSPTGPSSAEAASSSE 175
Query: 170 ---KPFAPMVINGSIDYDGLGPVSWW 192
K AP + GSI GLG +SWW
Sbjct: 176 ELPKKEAPYTLMGSISEPGLGLLSWW 201
>gi|50422141|ref|XP_459633.1| DEHA2E07414p [Debaryomyces hansenii CBS767]
gi|49655301|emb|CAG87863.1| DEHA2E07414p [Debaryomyces hansenii CBS767]
Length = 196
Score = 130 bits (328), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 73/200 (36%), Positives = 115/200 (57%), Gaps = 13/200 (6%)
Query: 1 MFYLSKIEHTLRLPPHLLRLPLNEAIKLELENVFLDKVIANLGLCISIYDIKEIEGGFVY 60
MF LSK+ +R+PPH +P+ E+I EL F +KVI+NLGL IS++D+ +I+ G +
Sbjct: 1 MFILSKLSDLVRIPPHTFNIPIQESITNELNKKFANKVISNLGLVISLWDLIDIKDGLLK 60
Query: 61 PGEGASTHTVKFRLVVFRPFVGEIIAAKLKESDANGLRLSLGFFEDIYVPSHLLPSPSRS 120
PG+GAS V FR VV++PF+GE++ + E A G+++ L FF++I++P +
Sbjct: 61 PGDGASFVEVTFRCVVWKPFIGEVLTGWVSECSAEGIKVKLEFFDEIFIPKNYFFENCLF 120
Query: 121 EPDPYGRYEVKWIWE-FGDTKYVIDGLDEIKFRV---LSVNYPSIPIEQAEG----SKPF 172
+P E W+W+ DT+ ID ++I+FR+ + VN +A G +
Sbjct: 121 KP-----VEKAWVWKPDDDTELYIDINEKIRFRIEEEIFVNIKPKSSSEAFGLEEPTNKA 175
Query: 173 APMVINGSIDYDGLGPVSWW 192
P + S DG+G VSWW
Sbjct: 176 PPYALLASCQSDGMGCVSWW 195
>gi|348569566|ref|XP_003470569.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC8-like [Cavia
porcellus]
Length = 204
Score = 130 bits (327), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 78/206 (37%), Positives = 115/206 (55%), Gaps = 19/206 (9%)
Query: 1 MFYLSKIEHTLRLPPHLLRLPLNEAIKLELENVFLDKVIANLGLCISIYDIKEIEGGFVY 60
MF L ++ T+R+PP LN++I EL +KV+ N+GLCI ++DI +E +V+
Sbjct: 1 MFVLVEMVDTVRIPPWQFDRKLNDSIAEELNKKLANKVVYNVGLCICLFDITRLEDSYVF 60
Query: 61 PGEGASTHTVKFRLVVFRPFVGEIIAAKLKESDANGLRLSLGFFEDIYVPSHLLPSPSRS 120
PG+GAS V FR VVF PF+ EI+ K+K G+ +SLGFF+DI +P L P++
Sbjct: 61 PGDGASHTKVHFRYVVFHPFLDEILIGKIKGCSPEGVHVSLGFFDDILIPPESLQQPAK- 119
Query: 121 EPDPYGRYEVKWIWEF----GDTKYVIDGLDEIKFRVLSVNY----PSIP--IEQAEGS- 169
+ E W+WE+ G +D +EI+FRV+ ++ P+ P E A S
Sbjct: 120 ----FDEAEQVWVWEYETEEGAHDLYMDTGEEIRFRVVDESFVDTSPTGPRSAEAAATSE 175
Query: 170 ---KPFAPMVINGSIDYDGLGPVSWW 192
+ AP + GSI GLG +SWW
Sbjct: 176 EPPRKEAPYSLVGSIIEPGLGLLSWW 201
>gi|116004145|ref|NP_001070430.1| DNA-directed RNA polymerase III subunit RPC8 [Bos taurus]
gi|122136999|sp|Q2T9X1.1|RPC8_BOVIN RecName: Full=DNA-directed RNA polymerase III subunit RPC8;
Short=RNA polymerase III subunit C8; AltName:
Full=DNA-directed RNA polymerase III subunit 22.9 kDa
polypeptide; AltName: Full=DNA-directed RNA polymerase
III subunit H
gi|83405434|gb|AAI11228.1| Polymerase (RNA) III (DNA directed) polypeptide H (22.9kD) [Bos
taurus]
Length = 204
Score = 130 bits (327), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 76/206 (36%), Positives = 114/206 (55%), Gaps = 19/206 (9%)
Query: 1 MFYLSKIEHTLRLPPHLLRLPLNEAIKLELENVFLDKVIANLGLCISIYDIKEIEGGFVY 60
MF L ++ T+R+PP LN++I EL +KV+ N+GLCI ++DI ++E +V+
Sbjct: 1 MFVLVEMVDTVRIPPWQFERKLNDSIDEELNKKLANKVMYNVGLCICLFDITKLEDAYVF 60
Query: 61 PGEGASTHTVKFRLVVFRPFVGEIIAAKLKESDANGLRLSLGFFEDIYVPSHLLPSPSRS 120
PG+GAS V FR VVF PF+ EI+ K+K G+ +SLGFF+DI +P L P++
Sbjct: 61 PGDGASHTKVHFRYVVFHPFLDEILIGKIKGCSPEGVHVSLGFFDDILIPPESLQQPAK- 119
Query: 121 EPDPYGRYEVKWIWEF----GDTKYVIDGLDEIKFRVLSVNY----PSIPIEQAEGS--- 169
+ E W+WE+ G +D +E++FRV+ ++ P+ P S
Sbjct: 120 ----FDEAEQVWVWEYETEEGAHDLYMDIGEEVRFRVVDESFVDTSPTGPSSAEAASSSE 175
Query: 170 ---KPFAPMVINGSIDYDGLGPVSWW 192
K AP + GSI GLG +SWW
Sbjct: 176 ELPKKEAPYTLMGSISEPGLGLLSWW 201
>gi|312077201|ref|XP_003141199.1| RNA polymerase Rpb7 domain-containing protein [Loa loa]
gi|307763636|gb|EFO22870.1| RNA polymerase Rpb7 domain-containing protein [Loa loa]
Length = 225
Score = 130 bits (327), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 74/198 (37%), Positives = 108/198 (54%), Gaps = 11/198 (5%)
Query: 1 MFYLSKIEHTLRLPPHLLRLPLNEAIKLELENVFLDKVIANLGLCISIYDIKEIEGGFVY 60
MF L+ +E +R+ PH P + L F +K++ LGLCI IYD+ +I ++
Sbjct: 1 MFVLAMLEDNVRIKPHQFGEPFEPMLMKRLNEQFANKIVPGLGLCIIIYDLVDIGASYIL 60
Query: 61 PGEGASTHTVKFRLVVFRPFVGEIIAAKLKESDANGLRLSLGFFEDIYVPSHLLPSPSRS 120
PG+G++ VKFR VVFRPF+ E+I AK+ S+A GL LS+ FFEDI++P+H LP PS
Sbjct: 61 PGDGSTHTKVKFRFVVFRPFIDEVIEAKVLSSNAEGLMLSVIFFEDIFIPAHRLPQPSVF 120
Query: 121 EPDPYGRYEVKWIWEF-----GDTKYVIDGLDEIKFRVLSVNYPSI-PIEQAEGSKPFAP 174
E + E W W++ K +D ++FRV+ + + P + K
Sbjct: 121 EEE-----EQIWYWDYQPEDGQSAKLYMDPGKTVRFRVIDNIFKDVDPNSSQDELKREKS 175
Query: 175 MVINGSIDYDGLGPVSWW 192
I GS+ GLG V WW
Sbjct: 176 YQIIGSMAETGLGCVLWW 193
>gi|432870759|ref|XP_004071834.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC8-like
isoform 1 [Oryzias latipes]
Length = 214
Score = 130 bits (326), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 74/218 (33%), Positives = 113/218 (51%), Gaps = 32/218 (14%)
Query: 1 MFYLSKIEHTLRLPPHLLRLPLNEAIKLELENVFLDKVIANLGLCISIYDIKEIEGGFVY 60
MF L ++ T+R+PP LNEA+ EL +KV+ N+GLCI +YDI ++E +++
Sbjct: 1 MFVLVEMVDTVRIPPWCFHRQLNEAVAEELNKKLANKVVFNVGLCICLYDITKLEDSYIF 60
Query: 61 PGEGASTHTVKFRLVVFRPFVGEIIAAKLKESDANGLRLSLGFFEDIYVPSHLLPSPSRS 120
PG+GAS V FR VVF PF+ EI+ K+K G+ +++GFF+DI +P L P++
Sbjct: 61 PGDGASHTKVHFRFVVFHPFLEEILVGKIKYCSQEGVHVTMGFFDDILIPPESLQQPAK- 119
Query: 121 EPDPYGRYEVKWIWEF----GDTKYVIDGLDEIKFRVLSVNY------------------ 158
+ E W+WE+ G +D +EI+FRV +
Sbjct: 120 ----FDEAEQVWLWEYETDEGAHDLYMDQGEEIRFRVTDEVFVDTSPTGPAAATPDNAAQ 175
Query: 159 ----PSIPIEQAEGSKPFAPMVINGSIDYDGLGPVSWW 192
+ P E++ K AP + G+I GLG +SWW
Sbjct: 176 PGQSTAAPAEESTEKKE-APYTLIGTICEPGLGLLSWW 212
>gi|68480238|ref|XP_715928.1| hypothetical protein CaO19.8073 [Candida albicans SC5314]
gi|68480354|ref|XP_715878.1| hypothetical protein CaO19.443 [Candida albicans SC5314]
gi|46437521|gb|EAK96866.1| hypothetical protein CaO19.443 [Candida albicans SC5314]
gi|46437573|gb|EAK96917.1| hypothetical protein CaO19.8073 [Candida albicans SC5314]
gi|238879020|gb|EEQ42658.1| DNA-directed RNA polymerase III 25 kDa polypeptide [Candida
albicans WO-1]
Length = 195
Score = 130 bits (326), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 71/199 (35%), Positives = 110/199 (55%), Gaps = 12/199 (6%)
Query: 1 MFYLSKIEHTLRLPPHLLRLPLNEAIKLELENVFLDKVIANLGLCISIYDIKEIEGGFVY 60
MF LS+I +R+PP +P+ +I EL + +K+IANLGL I+I+DI +I+ G +
Sbjct: 1 MFILSEISDLIRIPPSAFNVPIQHSISDELNKKYANKIIANLGLVITIWDILDIKDGLLK 60
Query: 61 PGEGASTHTVKFRLVVFRPFVGEIIAAKLKESDANGLRLSLGFFEDIYVPSHLLPSPSRS 120
PG+G S V+FR +V++PF GEI+ + E A G+++ + FF++I++P L +
Sbjct: 61 PGDGGSYVEVRFRSIVWKPFRGEILTGWVTECTAKGIKVRMEFFDEIWIPKDFLFENCK- 119
Query: 121 EPDPYGRYEVKWIWEFGDTKYVIDGLDEIKFRVLSVNY----PSIPIEQAEGSK---PFA 173
Y E WI+ + + ID ++I+FRV N+ P + EQ E K
Sbjct: 120 ----YSESEQAWIYLLDENELFIDVNEKIRFRVEEENFYNVKPKLEDEQTEEEKKATTLP 175
Query: 174 PMVINGSIDYDGLGPVSWW 192
P I S G+G VSWW
Sbjct: 176 PYTITASCQDYGMGCVSWW 194
>gi|448090378|ref|XP_004197055.1| Piso0_004291 [Millerozyma farinosa CBS 7064]
gi|448094779|ref|XP_004198086.1| Piso0_004291 [Millerozyma farinosa CBS 7064]
gi|359378477|emb|CCE84736.1| Piso0_004291 [Millerozyma farinosa CBS 7064]
gi|359379508|emb|CCE83705.1| Piso0_004291 [Millerozyma farinosa CBS 7064]
Length = 195
Score = 130 bits (326), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 68/199 (34%), Positives = 111/199 (55%), Gaps = 12/199 (6%)
Query: 1 MFYLSKIEHTLRLPPHLLRLPLNEAIKLELENVFLDKVIANLGLCISIYDIKEIEGGFVY 60
MF LSKI +R+PPH P+ +++ EL F +KV+ NLGL ++++D+ +I+ G +
Sbjct: 1 MFVLSKITDLIRIPPHSFNEPIEVSVRNELNKKFANKVVNNLGLAVTVWDLIDIKDGLLK 60
Query: 61 PGEGASTHTVKFRLVVFRPFVGEIIAAKLKESDANGLRLSLGFFEDIYVPSHLLPSPSRS 120
PG+G S V FR VV++PFVGE++ + + A G+++ LGFF+DI+VP +
Sbjct: 61 PGDGGSFVEVTFRCVVWKPFVGEVLTGWVSQCTAEGIKVRLGFFDDIFVPRNYFFENCEF 120
Query: 121 EPDPYGRYEVKWIWEFGD-TKYVIDGLDEIKFRVLSVNYPSIPIEQAEG------SKPFA 173
+P E W+W D T+ ID ++I+FR+ + ++ + E +
Sbjct: 121 KP-----TEKAWVWRPDDETELYIDVNEKIRFRIEEEVFVNVKADTRENEDEETKANRAP 175
Query: 174 PMVINGSIDYDGLGPVSWW 192
P I S DG+G +SWW
Sbjct: 176 PYAILASCQTDGMGCISWW 194
>gi|351708339|gb|EHB11258.1| DNA-directed RNA polymerase III subunit RPC8 [Heterocephalus
glaber]
Length = 204
Score = 130 bits (326), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 78/206 (37%), Positives = 116/206 (56%), Gaps = 19/206 (9%)
Query: 1 MFYLSKIEHTLRLPPHLLRLPLNEAIKLELENVFLDKVIANLGLCISIYDIKEIEGGFVY 60
MF L ++ T+R+PP LN++I EL +KV+ ++GLCI ++DI +E +V+
Sbjct: 1 MFVLVEMVDTVRIPPWQFDRNLNDSIAEELNKKLANKVLYSVGLCICLFDITRLEDSYVF 60
Query: 61 PGEGASTHTVKFRLVVFRPFVGEIIAAKLKESDANGLRLSLGFFEDIYVPSHLLPSPSRS 120
PG+GAS V FR VVF PF+ EI+ K+K + G+ +SLGFF+DI +P L P++
Sbjct: 61 PGDGASHTKVHFRYVVFHPFLDEILIGKIKGCSSEGVHVSLGFFDDILIPPESLQQPAK- 119
Query: 121 EPDPYGRYEVKWIWEF----GDTKYVIDGLDEIKFRVLSVNY----PSIP--IEQAEGS- 169
+ E W+WE+ G +D +EI+FRV+ ++ P+ P E A S
Sbjct: 120 ----FDEVEQVWVWEYETEEGAHDLYMDTGEEIRFRVVDESFVDTSPTGPRSAEAAATSE 175
Query: 170 ---KPFAPMVINGSIDYDGLGPVSWW 192
K AP + GSI GLG +SWW
Sbjct: 176 EPPKKEAPYSLVGSIIEPGLGLLSWW 201
>gi|348511267|ref|XP_003443166.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC8-like
[Oreochromis niloticus]
Length = 214
Score = 129 bits (325), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 76/217 (35%), Positives = 113/217 (52%), Gaps = 30/217 (13%)
Query: 1 MFYLSKIEHTLRLPPHLLRLPLNEAIKLELENVFLDKVIANLGLCISIYDIKEIEGGFVY 60
MF L ++ T+R+PP LNEA+ EL +KV+ N+GLCI +YDI ++E +++
Sbjct: 1 MFVLVEMVDTVRIPPWNFHRQLNEAVAEELNKKLANKVVYNVGLCICLYDITKLEDSYIF 60
Query: 61 PGEGASTHTVKFRLVVFRPFVGEIIAAKLKESDANGLRLSLGFFEDIYVPSHLLPSPSRS 120
PG+GAS V FR VVF PF+ EI+ K+K G+ +++GFF+DI +P L P++
Sbjct: 61 PGDGASHTKVHFRYVVFHPFLDEILIGKIKYCSQEGVYVTMGFFDDILIPPESLQQPAK- 119
Query: 121 EPDPYGRYEVKWIWEF----GDTKYVIDGLDEIKFRVLSVNY----PSIPIEQAE----- 167
+ E W+WE+ G +D +EI+FRV + P+ P A
Sbjct: 120 ----FDEAEQVWLWEYETDEGAHDLYMDQGEEIRFRVTDEVFVDTSPTGPATAASDTAAQ 175
Query: 168 ------------GSKPFAPMVINGSIDYDGLGPVSWW 192
G K AP + G+I GLG +SWW
Sbjct: 176 PGQSTAPPKEDGGEKKEAPYTLIGTICEPGLGLLSWW 212
>gi|260943680|ref|XP_002616138.1| hypothetical protein CLUG_03379 [Clavispora lusitaniae ATCC 42720]
gi|238849787|gb|EEQ39251.1| hypothetical protein CLUG_03379 [Clavispora lusitaniae ATCC 42720]
Length = 196
Score = 129 bits (325), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 69/200 (34%), Positives = 115/200 (57%), Gaps = 13/200 (6%)
Query: 1 MFYLSKIEHTLRLPPHLLRLPLNEAIKLELENVFLDKVIANLGLCISIYDIKEIEGGFVY 60
MF LS++ +R+PP +P++ +K EL + +KVI+NLGL +S++DI +I+ G +
Sbjct: 1 MFILSELSDLIRVPPSSFNIPVHHVLKDELHKKYSNKVISNLGLAVSVWDISDIKDGLLK 60
Query: 61 PGEGASTHTVKFRLVVFRPFVGEIIAAKLKESDANGLRLSLGFFEDIYVPSHLLPSPSRS 120
PG+G + V+FR++V++PFVGEI+ + + A G+++ +GFF+DI++P +
Sbjct: 61 PGDGGAYVEVRFRIIVWKPFVGEILTGWVADCSAEGIKVRMGFFDDIFIPKDYIFESCTF 120
Query: 121 EPDPYGRYEVKWIWEFG-DTKYVIDGLDEIKFRV---LSVNYPSIPIEQA----EGSKPF 172
P E W+W+ +TK ID ++I+FRV + VN +A E +
Sbjct: 121 SP-----AEKAWVWQMDEETKLYIDVNEKIRFRVEEEVFVNVKPKTSSEALGLEEQTNKA 175
Query: 173 APMVINGSIDYDGLGPVSWW 192
P + S DG+G VSWW
Sbjct: 176 PPYALIASCQTDGMGCVSWW 195
>gi|194037188|ref|XP_001929168.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC8 isoform 1
[Sus scrofa]
Length = 204
Score = 129 bits (325), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 75/206 (36%), Positives = 114/206 (55%), Gaps = 19/206 (9%)
Query: 1 MFYLSKIEHTLRLPPHLLRLPLNEAIKLELENVFLDKVIANLGLCISIYDIKEIEGGFVY 60
MF L ++ T+R+PP LN++I EL +KV+ N+GLCI ++DI ++E +V+
Sbjct: 1 MFVLVEMVDTVRIPPWQFERKLNDSIAEELNKKLANKVVYNVGLCICLFDITKLEDAYVF 60
Query: 61 PGEGASTHTVKFRLVVFRPFVGEIIAAKLKESDANGLRLSLGFFEDIYVPSHLLPSPSRS 120
PG+GAS V FR VVF PF+ EI+ K+K G+ +SLGFF+DI +P L P++
Sbjct: 61 PGDGASHTKVHFRYVVFHPFLDEILIGKIKGCSPEGVHVSLGFFDDILIPPESLQQPAK- 119
Query: 121 EPDPYGRYEVKWIWEF----GDTKYVIDGLDEIKFRVLSVNY----PSIPIEQAEGS--- 169
+ E W+WE+ G +D +E++FRV+ ++ P+ P S
Sbjct: 120 ----FDEAEQVWVWEYETEEGAHDLYMDTGEELRFRVVDESFVDTSPTGPSSAEAASSSE 175
Query: 170 ---KPFAPMVINGSIDYDGLGPVSWW 192
+ AP + GSI GLG +SWW
Sbjct: 176 ELPRKEAPYTLVGSICEPGLGLLSWW 201
>gi|297706308|ref|XP_002829986.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC8-like
isoform 1 [Pongo abelii]
Length = 204
Score = 129 bits (325), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 75/206 (36%), Positives = 112/206 (54%), Gaps = 19/206 (9%)
Query: 1 MFYLSKIEHTLRLPPHLLRLPLNEAIKLELENVFLDKVIANLGLCISIYDIKEIEGGFVY 60
MF L ++ T+R+PP + LN++I EL +KV+ N+GLCI ++DI ++E +V+
Sbjct: 1 MFVLVEMVDTVRIPPWQFQRKLNDSIAEELNKKLANKVVYNVGLCICLFDITKLEDAYVF 60
Query: 61 PGEGASTHTVKFRLVVFRPFVGEIIAAKLKESDANGLRLSLGFFEDIYVPSHLLPSPSRS 120
PG+G S V F VVF PF+ EI+ K+K G+ +SLGFF DI +P L P++
Sbjct: 61 PGDGTSHTKVHFPYVVFHPFLDEILIGKIKGCSPEGVHVSLGFFHDILIPPESLQQPAK- 119
Query: 121 EPDPYGRYEVKWIWEF----GDTKYVIDGLDEIKFRVLSVNY----PSIP------IEQA 166
+ E W+WE+ G +D +EI+FRV+ ++ P+ P
Sbjct: 120 ----FDEAEQVWVWEYETEEGAHDLYMDTGEEIRFRVVDESFVDTSPTGPSSADATASSE 175
Query: 167 EGSKPFAPMVINGSIDYDGLGPVSWW 192
E K AP + GSI GLG +SWW
Sbjct: 176 ELPKKEAPYTLVGSISEPGLGLLSWW 201
>gi|307107725|gb|EFN55967.1| hypothetical protein CHLNCDRAFT_145291 [Chlorella variabilis]
Length = 221
Score = 129 bits (324), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 77/213 (36%), Positives = 111/213 (52%), Gaps = 22/213 (10%)
Query: 1 MFYLSKIEHTLRLPPHLLRLPLNEAIKLELENVFLDKVIANLGLCISIYDIKEIEGGFVY 60
MF LS +E +R+ P L P AI LE FLDK +A LGL +++YDI I G+VY
Sbjct: 1 MFILSTLEDNVRIAPQDLGKPPAVAITTALEKSFLDKAVAGLGLVVTLYDILSIGDGYVY 60
Query: 61 PGEGASTHTVKFRLVVFRPFVGEIIAAKLKESDANGLRLSLGFFEDIYVPSHLLPSPS-- 118
P +G + + V FR+VVFRPF E++ K+ + G+ + LGFF+D+ +P H +P PS
Sbjct: 61 PSDGGAHYKVCFRVVVFRPFRDELLVGKVHKMTKEGMYVDLGFFKDVIIPPHGMPEPSFW 120
Query: 119 -----RSEPDPYGRYEVKWIWEF-GDTKYVIDGLDEIKFRVLSVNYPSIPI------EQA 166
S W+W+ G + GL ++F+V V + +P +Q
Sbjct: 121 KGDDEASNAAATNSRGKAWLWKVEGQDLFFERGL-PLRFKVQIVRFNPVPTLASQQKQQQ 179
Query: 167 EG-------SKPFAPMVINGSIDYDGLGPVSWW 192
EG +PF PM + G D DGLG V W+
Sbjct: 180 EGEPVVGTSDRPFVPMEVVGRADGDGLGMVHWY 212
>gi|73968962|ref|XP_849136.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC8 isoform 1
[Canis lupus familiaris]
Length = 204
Score = 129 bits (323), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 75/206 (36%), Positives = 113/206 (54%), Gaps = 19/206 (9%)
Query: 1 MFYLSKIEHTLRLPPHLLRLPLNEAIKLELENVFLDKVIANLGLCISIYDIKEIEGGFVY 60
MF L ++ T+R+PP LN++I EL +KV+ ++GLCI ++DI +E +V+
Sbjct: 1 MFVLVEMVDTVRIPPWQFERKLNDSIAEELNKKLANKVVYSVGLCICLFDITRLEDAYVF 60
Query: 61 PGEGASTHTVKFRLVVFRPFVGEIIAAKLKESDANGLRLSLGFFEDIYVPSHLLPSPSRS 120
PG+GAS V FR VVF PF+ EI+ ++K G+ +SLGFF+DI +P L P++
Sbjct: 61 PGDGASHTKVHFRYVVFHPFLDEILIGRIKGCSPEGVHVSLGFFDDILIPPESLQQPAK- 119
Query: 121 EPDPYGRYEVKWIWEF----GDTKYVIDGLDEIKFRVLSVNY----PSIPIEQAEGS--- 169
+ E W+WE+ G +D +EI+FRV+ ++ P+ P S
Sbjct: 120 ----FDEAEQVWVWEYETEEGAHDLYMDTGEEIRFRVVDESFVDTSPTGPSSAEATSSSE 175
Query: 170 ---KPFAPMVINGSIDYDGLGPVSWW 192
K AP + GSI GLG +SWW
Sbjct: 176 ELPKKEAPYTLVGSISEPGLGLLSWW 201
>gi|340368576|ref|XP_003382827.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC8-like
[Amphimedon queenslandica]
Length = 199
Score = 129 bits (323), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 69/202 (34%), Positives = 117/202 (57%), Gaps = 15/202 (7%)
Query: 1 MFYLSKIEHTLRLPPHLLRLPLNEAIKLELENVFLDKVIANLGLCISIYDIKEIEGGFVY 60
MF ++++E +++ P + NE IK L F +KV+ N+GLC+S++DI ++ F+
Sbjct: 1 MFIITELEDLVKIQPWKFQRDTNEIIKSTLNRKFSNKVLHNVGLCVSLFDIIKVNEFFLL 60
Query: 61 PGEGASTHTVKFRLVVFRPFVGEIIAAKLK-ESDANGLRLSLGFFEDIYVPSHLLPSPSR 119
G+GA+ ++F L+VFRPF+ EI+ K++ S + G+R+SLGFF+++ + +P PSR
Sbjct: 61 AGDGATQAKIRFSLIVFRPFIDEILVGKVRGSSRSEGIRVSLGFFDNVLILPQSMPHPSR 120
Query: 120 SEPDPYGRYEVKWIWEF----GDTKYVIDGLDEIKFRVLSVNY----PSIPIEQAEGSKP 171
+ D E W+W++ G +ID +I+F+V+ + P + +E +
Sbjct: 121 FDDD-----EQLWVWQYDNEDGTNDMIIDIGQDIRFKVIEEKFIDISPKVSQSGSEAQQS 175
Query: 172 F-APMVINGSIDYDGLGPVSWW 192
+P I GSI GLG VSWW
Sbjct: 176 SNSPYTIYGSISESGLGLVSWW 197
>gi|17566938|ref|NP_505625.1| Protein RPC-25 [Caenorhabditis elegans]
gi|3881812|emb|CAA94858.1| Protein RPC-25 [Caenorhabditis elegans]
Length = 239
Score = 129 bits (323), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 76/199 (38%), Positives = 105/199 (52%), Gaps = 12/199 (6%)
Query: 1 MFYLSKIEHTLRLPPHLLRLPLNEAIKLELENVFLDKVIANLGLCISIYDIKEIEGGFVY 60
MF LS + T+ + PH L IK L +K+I +LGLCI +YDI EI ++
Sbjct: 1 MFILSLLHDTVAIQPHQLSSDQQIVIKKRLNERLANKIIPDLGLCICVYDINEIGDSYIL 60
Query: 61 PGEGASTHTVKFRLVVFRPFVGEIIAAKLKESDANGLRLSLGFFEDIYVPSHLLPSPSRS 120
PGEG VKFR++VFRPFV E+I AK+ S GL L++ FFEDI+VP+ LP P
Sbjct: 61 PGEGDCRARVKFRMIVFRPFVDEVIEAKVIGSSRQGLCLTIQFFEDIFVPAEKLPEPHVF 120
Query: 121 EPDPYGRYEVKWIWEFGD------TKYVIDGLDEIKFRVLSVNYPSIPIE-QAEGSKPFA 173
E + G+ W WE+ K +D ++FRV + + + E E K
Sbjct: 121 EEE--GQV---WYWEYAQEDGEPPAKLYMDPGKIVRFRVTEIIFKDLKPELTHEERKTEK 175
Query: 174 PMVINGSIDYDGLGPVSWW 192
M I G++ GLG + WW
Sbjct: 176 SMEIKGTMASTGLGCIGWW 194
>gi|323452814|gb|EGB08687.1| hypothetical protein AURANDRAFT_25657 [Aureococcus anophagefferens]
Length = 219
Score = 128 bits (322), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 73/215 (33%), Positives = 113/215 (52%), Gaps = 28/215 (13%)
Query: 1 MFYLSKIEHTLRLPPHLLRLPLNEAIKLELENVFLDKVIANLGLCISIYDIKEIEGGFVY 60
MF L++++ T+R+ P P + +K E++ + +V+ ++GLC+ D+ ++ G VY
Sbjct: 1 MFVLAEMQDTVRVAPGAFGKPTTDIVKAEVDAKYAARVVNDVGLCVCCRDVLDVGDGLVY 60
Query: 61 PGEGASTHTVKFRLVVFRPFVGEIIAAKLKESDANGLRLSLGFFEDIYVPSHLLPSPSRS 120
P +G +T+ F L+VFRPFVGEI A + S G+R SLGFFED+ +PS LP+P+
Sbjct: 61 PLDGGATYKATFSLLVFRPFVGEIATATIVASGPEGVRASLGFFEDVNIPSKFLPTPAY- 119
Query: 121 EPDPYGRYEVKWIWE-----------FGDTKYVIDGLDEIKFRVLSVNYPSI-------- 161
Y + W W D + +D E++FRV ++N+ +
Sbjct: 120 ----YDKDSNIWTWRPDLGDDEDGGGGDDACFHLDVGLELRFRVAAINFTRVSKHKRGLQ 175
Query: 162 ----PIEQAEGSKPFAPMVINGSIDYDGLGPVSWW 192
IE S AP I GSI+ DGLGP +WW
Sbjct: 176 ATTSTIEVPGASAAAAPGNITGSINEDGLGPTTWW 210
>gi|213512140|ref|NP_001134466.1| DNA-directed RNA polymerase III subunit RPC8 [Salmo salar]
gi|209733538|gb|ACI67638.1| DNA-directed RNA polymerase III subunit RPC8 [Salmo salar]
Length = 208
Score = 128 bits (321), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 74/211 (35%), Positives = 111/211 (52%), Gaps = 24/211 (11%)
Query: 1 MFYLSKIEHTLRLPPHLLRLPLNEAIKLELENVFLDKVIANLGLCISIYDIKEIEGGFVY 60
MF ++ T+R+PP + NEAI EL +KV+ +GLCI +YDI ++E +++
Sbjct: 1 MFVAVEMVDTVRIPPWNFQRQFNEAIAEELNKKLANKVVYQVGLCICLYDITKLEDSYIF 60
Query: 61 PGEGASTHTVKFRLVVFRPFVGEIIAAKLKESDANGLRLSLGFFEDIYVPSHLLPSPSRS 120
PG+GAS V FR VVF PF+ EI+ K+K G+ +SLGFF+DI +P L P++
Sbjct: 61 PGDGASHTKVHFRYVVFHPFLDEILVGKIKYCSQEGVHVSLGFFDDIVIPPESLQQPAK- 119
Query: 121 EPDPYGRYEVKWIWEF----GDTKYVIDGLDEIKFRVLSVNY----PSIPI--------- 163
+ E W+WE+ G +D ++I+FRV + P+ P
Sbjct: 120 ----FDEAEQVWVWEYETDEGAHDLYMDQGEDIRFRVTDEVFLDTSPTGPSAAATDTPAA 175
Query: 164 --EQAEGSKPFAPMVINGSIDYDGLGPVSWW 192
+ G K AP + G+I GLG +SWW
Sbjct: 176 PGAEEGGQKKEAPYTLLGTISEPGLGLLSWW 206
>gi|395753475|ref|XP_002831233.2| PREDICTED: DNA-directed RNA polymerase III subunit RPC8 [Pongo
abelii]
Length = 239
Score = 128 bits (321), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 79/212 (37%), Positives = 116/212 (54%), Gaps = 25/212 (11%)
Query: 1 MFYLSKIEHTLRLPPHLLRLPLNEAIKLELENVFLDKVIANLGLCISIYDIKEIEGGFVY 60
MF L ++ T+R+PP LN++I EL +KV+ N+GLCI ++DI ++E +V+
Sbjct: 30 MFVLVEMVDTVRIPPWQFERKLNDSIAEELNKKLANKVVYNVGLCICLFDITKLEDAYVF 89
Query: 61 PGEGASTHTVKFRLVVFRPFVGEIIAAKLKE------SDANGLRLSLGFFEDIYVPSHLL 114
PG+GAS V FR VVF PF+ EI+ K+K S A+ L +SLGFF+DI +P L
Sbjct: 90 PGDGASHTKVHFRYVVFHPFLDEILIGKIKGCSPEELSPASFLPVSLGFFDDILIPPESL 149
Query: 115 PSPSRSEPDPYGRYEVKWIWEF----GDTKYVIDGLDEIKFRVLSVNY----PSIP---- 162
P++ + E W+WE+ G +D +EI+FRV+ ++ P+ P
Sbjct: 150 QQPAK-----FDEAEQVWVWEYETEEGAHDLYMDTGEEIRFRVVDESFVDTSPTGPSSAD 204
Query: 163 --IEQAEGSKPFAPMVINGSIDYDGLGPVSWW 192
E K AP + GSI GLG +SWW
Sbjct: 205 ATTSSEELPKKEAPYTLVGSISEPGLGLLSWW 236
>gi|157130759|ref|XP_001661998.1| DNA-directed RNA polymerase III 25 kDa polypeptide [Aedes aegypti]
gi|108871791|gb|EAT36016.1| AAEL011866-PA [Aedes aegypti]
Length = 231
Score = 128 bits (321), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 77/210 (36%), Positives = 112/210 (53%), Gaps = 25/210 (11%)
Query: 1 MFYLSKIEHTLRLPPHLLRLPLNEAIKLELENVFLDKVIANLGLCISIYDIKEIEGGFVY 60
MF L++++ T+R+ P L L L EAIK E+ +KV+ N+GLCI++ DI ++ +
Sbjct: 1 MFVLAELKDTVRIAPELFNLKLPEAIKDEVNRKLANKVLLNVGLCITLKDIIKLGDSIIL 60
Query: 61 PGEGASTHTVKFRLVVFRPFVGEIIAAKLKESDANGLRLSLGFFEDIYVPSHLLPSPSRS 120
PG+GAS V FR +VFRP VG++I K++ G+ ++LGFF+DI +P L PSR
Sbjct: 61 PGDGASHTEVNFRYIVFRPMVGDVITGKIRSCSREGVHVTLGFFDDILIPPSALQHPSRF 120
Query: 121 EPDPYGRYEVKWIWEF--GDTK---YVIDGLDEIKFRVLSVNY-------------PSIP 162
E E W+WE+ D K +D + IKFRV + PS
Sbjct: 121 E-----EAEQAWVWEYPLEDGKKHDLYMDIGESIKFRVSGEVFEESSPIGPPDQEAPSTS 175
Query: 163 IEQAEGSKPFAPMVINGSIDYDGLGPVSWW 192
E +K P I +I+ GLG +SWW
Sbjct: 176 TTTTEANK--TPYRIMAAINESGLGLLSWW 203
>gi|403217141|emb|CCK71636.1| hypothetical protein KNAG_0H02220 [Kazachstania naganishii CBS
8797]
Length = 206
Score = 127 bits (320), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 78/210 (37%), Positives = 115/210 (54%), Gaps = 23/210 (10%)
Query: 1 MFYLSKIEHTLRLPPHLLRLPLNEAIKLELENVFLDKVIANLGLCISIYDIKEIEGGFVY 60
MF LSKI+ +R+PP + A+ +L + +KVI NLGLCIS+YD+ E++ G +
Sbjct: 1 MFILSKIKELVRVPPDQFQRKTAFAVTHQLNTKYANKVIPNLGLCISVYDLLEVDEGQLK 60
Query: 61 PGEGASTHTVKFRLVVFRPFVGEIIAAKLKESDANGLRLSL--GFFEDIYVPSHLLPSPS 118
PG+GA+ V FR ++F+PFVGEI+ + +ANG++++L F+DI++P+++L
Sbjct: 61 PGDGATYTNVTFRALIFKPFVGEILTGWITNCNANGMQVTLKGQMFQDIFIPANMLFDNC 120
Query: 119 RSEPDPYGRYEVKWIWEF-GDTKYVIDGLDEIKFRVLSVNY----PSIPIEQA------- 166
P+ E W+W D K D + I+FRV + PS E A
Sbjct: 121 YFLPN-----ESAWVWAMDDDNKLYFDINEMIRFRVEQEVFIDVKPSARDEAAKNEEDND 175
Query: 167 ---EGSKPFA-PMVINGSIDYDGLGPVSWW 192
E KP A P I GS DG+G VSWW
Sbjct: 176 ETGEKKKPAAPPYAILGSCQTDGMGLVSWW 205
>gi|156376407|ref|XP_001630352.1| predicted protein [Nematostella vectensis]
gi|156217371|gb|EDO38289.1| predicted protein [Nematostella vectensis]
Length = 205
Score = 127 bits (320), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 73/209 (34%), Positives = 115/209 (55%), Gaps = 22/209 (10%)
Query: 1 MFYLSKIEHTLRLPPHLLRLPLNEAIKLELENVFLDKVIANLGLCISIYDIKEIEGGFVY 60
MF L++I+ T+++ P L L + EAI +L +KV+ N+GLCI ++DI I ++
Sbjct: 1 MFVLAEIKDTVQIKPWLFSLDIQEAISNKLNMKLANKVVHNVGLCIVLHDILSIGDSYLV 60
Query: 61 PGEGASTHTVKFRLVVFRPFVGEIIAAKLKESDANGLRLSLGFFEDIYVPSHLLPSPSRS 120
PG+G+S V FR VVFRPFV EI+ +++ + G+++S+ FF+DI +P L PS+
Sbjct: 61 PGDGSSHTPVTFRFVVFRPFVDEILKGRIRSCNHEGVQVSMEFFDDIIIPYENLQQPSKF 120
Query: 121 EPDPYGRYEVKWIWEF---GDTKY--VIDGLDEIKFRVLSVNYPSIPIEQAEGSKP---- 171
+ D E W+WE+ GD + +D +EI+FRV+ + + E +
Sbjct: 121 DED-----EQVWVWEYTQEGDETHSMFMDVNEEIRFRVVDETFTDVTPSGPEAASKDQIA 175
Query: 172 --------FAPMVINGSIDYDGLGPVSWW 192
+P I GSI GLG +SWW
Sbjct: 176 TKDDQEIRKSPYTITGSISEPGLGLLSWW 204
>gi|145347797|ref|XP_001418348.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144578577|gb|ABO96641.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 208
Score = 126 bits (317), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 70/209 (33%), Positives = 112/209 (53%), Gaps = 22/209 (10%)
Query: 1 MFYLSKI-EHTLRLPPHLLRLPLNEAIKLELENVFLDKVIANLG-LCISIYDIKEIEGGF 58
MF + + + +++ P L EA+ ELE++++DKV+A G LC+++Y I I GG
Sbjct: 1 MFQIVALSDGAVKIAPVNLGKSTLEAVTQELESLYVDKVLAECGGLCVTLYSITNISGGT 60
Query: 59 VYPGEGASTHTVKFRLVVFRPFVGEIIAAKLKESDANGLRLSLGFFEDIYVPSHLLPSPS 118
V GEG V F++V+F+PF GE+I L +DA+G +S+GFF+DI+VP + +PS
Sbjct: 61 VLAGEGCVCFEVTFKVVLFKPFAGEVIEGTLLSADAHGAHVSIGFFKDIFVPPTNMQAPS 120
Query: 119 RSEPDPYGRYEVKWIWEFGDTKYVIDGLDEIKFRVLSVNYPSIPIEQAE----------- 167
+ D W+W++ + + +F+V++V +P P E
Sbjct: 121 EYDDDSK-----VWMWDYDGELMEMKVGERFRFKVVAVRFPESPKTAEELASLTRESGAA 175
Query: 168 ----GSKPFAPMVINGSIDYDGLGPVSWW 192
G FAPM++ I+ DGLG SWW
Sbjct: 176 PRDGGDAAFAPMLVIADINEDGLGLCSWW 204
>gi|427786869|gb|JAA58886.1| hypothetical protein [Rhipicephalus pulchellus]
Length = 198
Score = 126 bits (317), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 73/202 (36%), Positives = 113/202 (55%), Gaps = 15/202 (7%)
Query: 1 MFYLSKIEHTLRLPPHLLRLPLNEAIKLELENVFLDKVIANLGLCISIYDIKEIEGGFVY 60
MF +S++ ++R+PP L R+ NEAI +L +KV+ N+GLCI++YDI +IE +
Sbjct: 1 MFVISEMSDSIRVPPWLFRVSPNEAIVEQLNRRLANKVVINVGLCIALYDITKIEDSRIL 60
Query: 61 PGEGASTHTVKFRLVVFRPFVGEIIAAKLKESDANGLRLSLGFFEDIYVPSHLLPSPSRS 120
PG+G+ TV+FR VVFRPF+ E++ K++ S G+ +S+GFFEDI V + P+R
Sbjct: 61 PGDGSFHTTVQFRYVVFRPFMDEVLIGKIRSSSQEGIYVSMGFFEDILVTPDGMQHPAR- 119
Query: 121 EPDPYGRYEVKWIWEFGDTKYV----IDGLDEIKFRVLSVNY----PSIP--IEQAEGSK 170
+ E W+W + V +D +EI+FRV+ + P P E + +
Sbjct: 120 ----FDEKEQLWVWLYEAEGKVNDLYMDLGEEIRFRVVGEVFVDTTPGGPETTELPDSEE 175
Query: 171 PFAPMVINGSIDYDGLGPVSWW 192
P + SI GLG + WW
Sbjct: 176 RHVPYSLTASISEPGLGLLKWW 197
>gi|118404162|ref|NP_001072397.1| polymerase (RNA) III (DNA directed) polypeptide H (22.9kD) [Xenopus
(Silurana) tropicalis]
gi|111306182|gb|AAI21598.1| hypothetical protein MGC147203 [Xenopus (Silurana) tropicalis]
Length = 207
Score = 126 bits (317), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 72/209 (34%), Positives = 113/209 (54%), Gaps = 22/209 (10%)
Query: 1 MFYLSKIEHTLRLPPHLLRLPLNEAIKLELENVFLDKVIANLGLCISIYDIKEIEGGFVY 60
MF L ++ T+R P LN++I EL +KV+ N+GLCI ++DI +++ +++
Sbjct: 1 MFVLVEMVDTVRTNPWQFERKLNDSIAEELNKKLANKVVYNVGLCICLFDITKMDDSYIF 60
Query: 61 PGEGASTHTVKFRLVVFRPFVGEIIAAKLKESDANGLRLSLGFFEDIYVPSHLLPSPSRS 120
PG+GAS V+FR VVFRPF+ EI+ K+K G+ +SLGFF+DI +P L P++
Sbjct: 61 PGDGASHTKVQFRYVVFRPFLDEILMGKIKGCSPEGVHVSLGFFDDIVIPPESLQQPAK- 119
Query: 121 EPDPYGRYEVKWIWEF----GDTKYVIDGLDEIKFRVLSVNY----PSIPIEQA------ 166
+ E W+WE+ G +D ++I+FR++ + P+ P
Sbjct: 120 ----FDEAEQVWVWEYETEEGAHDLYMDVGEDIRFRMVDETFIDTSPTGPSSAEASSSTA 175
Query: 167 ---EGSKPFAPMVINGSIDYDGLGPVSWW 192
E + AP + GSI GLG +SWW
Sbjct: 176 VAEETPRKEAPYTLVGSISEPGLGLLSWW 204
>gi|241948883|ref|XP_002417164.1| DNA-directed RNA polymerase III 25 kDa subunit, putative [Candida
dubliniensis CD36]
gi|223640502|emb|CAX44756.1| DNA-directed RNA polymerase III 25 kDa subunit, putative [Candida
dubliniensis CD36]
Length = 195
Score = 126 bits (317), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 71/199 (35%), Positives = 108/199 (54%), Gaps = 12/199 (6%)
Query: 1 MFYLSKIEHTLRLPPHLLRLPLNEAIKLELENVFLDKVIANLGLCISIYDIKEIEGGFVY 60
MF LS+I +R+PP +P+ +I EL + +K+IANLGL I+I+DI +I+ G +
Sbjct: 1 MFILSEISDLIRIPPSSFNVPIQHSISDELNKKYANKIIANLGLVITIWDILDIKDGLLK 60
Query: 61 PGEGASTHTVKFRLVVFRPFVGEIIAAKLKESDANGLRLSLGFFEDIYVPSHLLPSPSRS 120
PG+G S V+FR +V++PF GEI+ + E G+++ + FF++I++P L
Sbjct: 61 PGDGGSYVEVRFRSIVWKPFRGEILTGWVTECTPKGIKVRMEFFDEIWIPKDFL-----F 115
Query: 121 EPDPYGRYEVKWIWEFGDTKYVIDGLDEIKFRVLSVNY----PSIPIEQAEGSK---PFA 173
E Y E WI+ + + ID + I+FRV N+ P + EQ E K
Sbjct: 116 ENCQYSESEQAWIYLLDENELFIDVNERIRFRVEEENFYNVKPKLNDEQTEEEKKATTLP 175
Query: 174 PMVINGSIDYDGLGPVSWW 192
P I S G+G VSWW
Sbjct: 176 PYTITASCQDYGMGCVSWW 194
>gi|357626904|gb|EHJ76803.1| putative RNA polymerase III polypeptide H [Danaus plexippus]
Length = 213
Score = 126 bits (316), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 68/201 (33%), Positives = 113/201 (56%), Gaps = 14/201 (6%)
Query: 1 MFYLSKIEHTLRLPPHLLRLPLNEAIKLELENVFLDKVIANLGLCISIYDIKEIEGGFVY 60
MF LS+++ LR+ P L E+I L +KV+ N+GLCI+++DI I +++
Sbjct: 1 MFVLSEMKDVLRVTPEHFHQSLTESITTLLNRKLANKVVLNVGLCIALFDITNIGHSYIF 60
Query: 61 PGEGASTHTVKFRLVVFRPFVGEIIAAKLKESDANGLRLSLGFFEDIYVPSHLLPSPSRS 120
PG+G+S V FR +VFRP V EI+ K++ +G+ +++GFF+DI +P + L PSR
Sbjct: 61 PGDGSSHTEVIFRYIVFRPLVEEILIGKIRSCSRDGVHVTMGFFDDILIPVNALQHPSR- 119
Query: 121 EPDPYGRYEVKWIWEF----GDTKYV-IDGLDEIKFRVLSVNY----PSIPIEQAEGSKP 171
+ + W+WE+ G+ + +D + I+FRV S + P+ P ++
Sbjct: 120 ----FDETDQAWVWEYPKEDGEKHDLFMDSGESIRFRVTSEEFEESLPTGPPGSERPTQA 175
Query: 172 FAPMVINGSIDYDGLGPVSWW 192
AP + G I+ GLG ++WW
Sbjct: 176 VAPYRLIGGINEPGLGLLTWW 196
>gi|341899564|gb|EGT55499.1| hypothetical protein CAEBREN_06283 [Caenorhabditis brenneri]
Length = 214
Score = 126 bits (316), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 74/198 (37%), Positives = 102/198 (51%), Gaps = 11/198 (5%)
Query: 1 MFYLSKIEHTLRLPPHLLRLPLNEAIKLELENVFLDKVIANLGLCISIYDIKEIEGGFVY 60
MF LS + T+ + PH + IK L ++V+ +LGLCI +YDI EI ++
Sbjct: 1 MFILSLLRDTIAIKPHQFVVDQQMVIKKRLNERLANRVVPDLGLCICVYDISEIGDSYIL 60
Query: 61 PGEGASTHTVKFRLVVFRPFVGEIIAAKLKESDANGLRLSLGFFEDIYVPSHLLPSPSRS 120
PGEG V FR++VFRPFV E+I AK+ S GL LS+ FFEDI+VP+ LP P
Sbjct: 61 PGEGDCRARVTFRMIVFRPFVDEVIEAKVIGSSRQGLTLSIEFFEDIFVPAEKLPEPHVF 120
Query: 121 EPDPYGRYEVKWIWEFGD-----TKYVIDGLDEIKFRVLSVNYPSI-PIEQAEGSKPFAP 174
E + G+ W WE K +D ++FR + + + P E K
Sbjct: 121 EEE--GQV---WYWEVAQEDEPPAKLYMDPGKIVRFRTTEIIFKDLKPDLTQEEQKTEKS 175
Query: 175 MVINGSIDYDGLGPVSWW 192
M I G++ GLG V WW
Sbjct: 176 MEIKGTMASTGLGCVGWW 193
>gi|254574134|ref|XP_002494176.1| RNA polymerase III subunit C25, required for transcription
initiation [Komagataella pastoris GS115]
gi|238033975|emb|CAY71997.1| RNA polymerase III subunit C25, required for transcription
initiation [Komagataella pastoris GS115]
gi|328354004|emb|CCA40401.1| DNA-directed RNA polymerase III subunit C25 [Komagataella pastoris
CBS 7435]
Length = 200
Score = 126 bits (316), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 72/204 (35%), Positives = 114/204 (55%), Gaps = 17/204 (8%)
Query: 1 MFYLSKIEHTLRLPPHLLRLPLNEAIKLELENVFLDKVIANLGLCISIYDIKEIEGGFVY 60
MF LS I +R+PPHL LP ++A+ E+ + +KVI LGL +S++D+ EI+ G +
Sbjct: 1 MFQLSVISDLIRVPPHLFHLPTDKAVLSEINIKYANKVIPKLGLFVSVWDLIEIQDGLLK 60
Query: 61 PGEGASTHTVKFRLVVFRPFVGEIIAAKLKESDANGLRLSLGFFEDIYVPSHLLPSPSRS 120
PG+GA+ TVKFR ++++PFVGE++ +K++ G+++++ FFEDI++P LL
Sbjct: 61 PGDGATFITVKFRGIIWKPFVGEVLTGWIKKNTPEGIKVTMEFFEDIFIPKSLL-----F 115
Query: 121 EPDPYGRYEVKWIWE-FGDTKYVIDGLDEIKFRVLSV-----------NYPSIPIEQAEG 168
E Y E WIW+ DT +D ++I FR+ N ++ E+
Sbjct: 116 ENAVYSGDEDAWIWKPDDDTSLYLDENEKIYFRIEEEVFTDIKPKGPDNSMNVTEEKESE 175
Query: 169 SKPFAPMVINGSIDYDGLGPVSWW 192
P I S +G+G VSWW
Sbjct: 176 ENKVPPYAIIASCQTEGMGCVSWW 199
>gi|240848647|ref|NP_001155474.1| polymerase (RNA) III (DNA directed) polypeptide H (22.9kD)-like
[Acyrthosiphon pisum]
gi|239788882|dbj|BAH71098.1| ACYPI002394 [Acyrthosiphon pisum]
gi|239788884|dbj|BAH71099.1| ACYPI002394 [Acyrthosiphon pisum]
Length = 203
Score = 126 bits (316), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 73/205 (35%), Positives = 116/205 (56%), Gaps = 18/205 (8%)
Query: 1 MFYLSKIEHTLRLPPHLLRLPLNEAIKLELENVFLDKVIANLGLCISIYDIKEIEGGFVY 60
MF +S+ E +++ P L I + L ++ +KV+ ++GLC+S++DI EI +Y
Sbjct: 1 MFIVSEFEEVVKVQPTHLEDDQMSRIIIHLNSMLANKVVMDVGLCLSLFDILEIGDSIIY 60
Query: 61 PGEGASTHTVKFRLVVFRPFVGEIIAAKLKESDANGLRLSLGFFEDIYVPSHLLPSPSRS 120
P EGA V+FR VVFRPFV EI+ K+K S ++G L+ GFFEDI+VP+ + +PSR
Sbjct: 61 PSEGAYFSKVRFRFVVFRPFVEEILIGKVKSSSSDGAVLTTGFFEDIFVPAANMQNPSR- 119
Query: 121 EPDPYGRYEVKWIWEF---GDT-KYVIDGLDEIKFRVLS---------VNYPSIPIEQAE 167
+ + W+WE+ GDT + +D + ++FRV+S V+ + +
Sbjct: 120 ----FDTKDKVWVWEYDNCGDTVELHMDIGETVRFRVVSEQFVDTHPGVDSGLLDTGEIA 175
Query: 168 GSKPFAPMVINGSIDYDGLGPVSWW 192
SK +P I G++ GLG + WW
Sbjct: 176 TSKSKSPYSIVGTVREPGLGVIGWW 200
>gi|401402842|ref|XP_003881348.1| hypothetical protein NCLIV_043800 [Neospora caninum Liverpool]
gi|325115760|emb|CBZ51315.1| hypothetical protein NCLIV_043800 [Neospora caninum Liverpool]
Length = 200
Score = 125 bits (315), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 69/204 (33%), Positives = 107/204 (52%), Gaps = 17/204 (8%)
Query: 1 MFYLSKIEHTLRLPPHLLRLPLNEAIKLELENVFLDKVIANLGLCISIYDIKEIEGGFVY 60
MF +S ++ + + P E ++ +E +L+KV+AN GL ++ Y+++ I+ +
Sbjct: 1 MFVISLLQDAVSVLPEDQMKNQEEVLRRAIEEKYLNKVVANCGLAVAFYELRRIQSATIR 60
Query: 61 PGEGASTHTVKFRLVVFRPFVGEIIAAKLKESDANGLRLSLGFFEDIYVPSHLLPSPSRS 120
G+G++ + V+F LV FRPF GEI+ L SD GLR+SLGFF+D+YVP+ L P
Sbjct: 61 SGDGSARYKVEFALVFFRPFQGEILEGTLMHSDTQGLRISLGFFQDVYVPAAALREPRGF 120
Query: 121 EPDPYGRYEVKWIWEFGDTKYVIDGLDE-IKFRVLSVNYPSIPIEQAEGSKP-------- 171
P +W W F D + L + I+FRV + + E G+
Sbjct: 121 NPASE-----RWWWGFEDHELEYGPLQQAIRFRVQEIRFDQSLAEGGGGAGTPELVVGGE 175
Query: 172 ---FAPMVINGSIDYDGLGPVSWW 192
APMV+ G++D DGLG WW
Sbjct: 176 RAGVAPMVVLGAVDEDGLGMKVWW 199
>gi|126274174|ref|XP_001387865.1| subunit of RNA polymerase III [Scheffersomyces stipitis CBS 6054]
gi|126213735|gb|EAZ63842.1| subunit of RNA polymerase III [Scheffersomyces stipitis CBS 6054]
Length = 196
Score = 125 bits (313), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 67/200 (33%), Positives = 114/200 (57%), Gaps = 13/200 (6%)
Query: 1 MFYLSKIEHTLRLPPHLLRLPLNEAIKLELENVFLDKVIANLGLCISIYDIKEIEGGFVY 60
MF LS++ +R+PPH +P+ ++ EL +K+I+NLGL ++I+D+ +I G +
Sbjct: 1 MFILSELTDLVRIPPHTFNIPIQHSLTDELNKKLSNKIISNLGLVVTIWDLLDINDGLLK 60
Query: 61 PGEGASTHTVKFRLVVFRPFVGEIIAAKLKESDANGLRLSLGFFEDIYVPSHLLPSPSRS 120
PG+G S V+FR +V++PF+GEII + + A G+++ L FF++I++P +
Sbjct: 61 PGDGGSYVEVRFRCIVWKPFIGEIITGWVSDCSAEGIKVRLDFFDEIFIPKRYIFENCEF 120
Query: 121 EPDPYGRYEVKWIWE-FGDTKYVIDGLDEIKFRV---LSVNYPSIPIEQAEG----SKPF 172
+P E W+W+ D+++ ID ++I+FRV + VN E+A G S
Sbjct: 121 KP-----VEKAWVWKPDEDSEFFIDINEKIRFRVEEEIFVNIKPKSSEEAIGLEEPSNKA 175
Query: 173 APMVINGSIDYDGLGPVSWW 192
P + S DG+G +SWW
Sbjct: 176 PPYALLASCQTDGMGCISWW 195
>gi|221484160|gb|EEE22456.1| RNA polymerase Rpb7, N-terminal domain-containing protein, putative
[Toxoplasma gondii GT1]
Length = 1214
Score = 124 bits (312), Expect = 1e-26, Method: Composition-based stats.
Identities = 66/204 (32%), Positives = 109/204 (53%), Gaps = 17/204 (8%)
Query: 1 MFYLSKIEHTLRLPPHLLRLPLNEAIKLELENVFLDKVIANLGLCISIYDIKEIEGGFVY 60
MF +S ++ + + P E ++ +E +L+KV+ N GL ++ Y+++ I+ +
Sbjct: 1015 MFVISLLQDAVSVLPETQMKNQGEVLRKAIEEKYLNKVVVNCGLAVAFYELRRIQSATIR 1074
Query: 61 PGEGASTHTVKFRLVVFRPFVGEIIAAKLKESDANGLRLSLGFFEDIYVPSHLLPSPSRS 120
G+G++ + V+F LV FRPF GEI+ L SD++GLR+SLGFF D+Y+P+ L
Sbjct: 1075 SGDGSARYKVEFSLVFFRPFQGEILEGTLMHSDSHGLRISLGFFHDVYIPAAAL-----R 1129
Query: 121 EPDPYGRYEVKWIWEFGDTKYVIDGLDE-IKFRVLSVNYPSIPIEQAEGSKP-------- 171
EP + +W W F D + L + I+FRV + + + G+
Sbjct: 1130 EPKGFNAASERWWWGFEDHELEYAPLQQAIRFRVQEIRFDQALADGNGGAGTQELVAGAE 1189
Query: 172 ---FAPMVINGSIDYDGLGPVSWW 192
APMV+ G++D DGLG +WW
Sbjct: 1190 RMGLAPMVVLGAVDDDGLGMKTWW 1213
>gi|225719760|gb|ACO15726.1| DNA-directed RNA polymerase III subunit RPC8 [Caligus clemensi]
Length = 203
Score = 124 bits (312), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 72/208 (34%), Positives = 114/208 (54%), Gaps = 23/208 (11%)
Query: 1 MFYLSKIEHTLRLPPHLLRLPLNEAIKLELENVFLDKVIANLGLCISIYDIKEIEGGFVY 60
MF LS+++ +RLP L PL EA+ E+ +KV+ N+GL + ++DI EI F++
Sbjct: 1 MFVLSEVKSLIRLPALQLNRPLPEALSEEINRKLSNKVVLNVGLAVCLFDILEIGESFLF 60
Query: 61 PGEGASTHTVKFRLVVFRPFVGEIIAAKLKESDANGLRLSLGFFEDIYVPSHLLPSPSRS 120
PG+ AS V FR++VFRPF+ E++ K+K +G+++SLGFFEDI++P L P R
Sbjct: 61 PGDEASHTRVVFRILVFRPFMEEVLNGKIKSCSKDGVQVSLGFFEDIWIPPESLQHPYR- 119
Query: 121 EPDPYGRYEVKWIWEF-----GDTKYVIDGLDEIKFRVLSVNY-----------PSIPIE 164
+ + W+WE+ +D +EI+FRV + ++ S +
Sbjct: 120 ----FDEADQVWVWEYPTEDGEKHDLFMDTGEEIRFRVTAESFIDTSPNVDPNPESRSTQ 175
Query: 165 QAEGSKPFAPMVINGSIDYDGLGPVSWW 192
Q + K P I S++ GLG +SWW
Sbjct: 176 QPDSDK--LPYSITASVNEPGLGLLSWW 201
>gi|170595314|ref|XP_001902331.1| RNA polymerase Rpb7, N-terminal domain containing protein [Brugia
malayi]
gi|158590049|gb|EDP28820.1| RNA polymerase Rpb7, N-terminal domain containing protein [Brugia
malayi]
Length = 220
Score = 124 bits (312), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 73/198 (36%), Positives = 107/198 (54%), Gaps = 11/198 (5%)
Query: 1 MFYLSKIEHTLRLPPHLLRLPLNEAIKLELENVFLDKVIANLGLCISIYDIKEIEGGFVY 60
MF L+ +E T+R+ PH + L +K++ LGLCI IYD+ ++ ++
Sbjct: 1 MFVLAVLEDTVRIKPHQFGESFEPMLMKRLNEQLANKIVPGLGLCIIIYDLLDVGVSYIL 60
Query: 61 PGEGASTHTVKFRLVVFRPFVGEIIAAKLKESDANGLRLSLGFFEDIYVPSHLLPSPSRS 120
PG+G++ VKFR VVFRPF+ EII AK+ S+A GL LS+ FFEDI++P+H LP PS
Sbjct: 61 PGDGSTHTKVKFRYVVFRPFIDEIIEAKVLSSNAEGLMLSVIFFEDIFIPAHRLPQPSIF 120
Query: 121 EPDPYGRYEVKWIWEF-----GDTKYVIDGLDEIKFRVLSVNYPSI-PIEQAEGSKPFAP 174
E + E W W++ K +D ++FRV+ + + P + K
Sbjct: 121 EEE-----EQIWYWDYQPEDGQSAKLYMDPGKTVRFRVIDNIFKDVDPNSNQDELKREKS 175
Query: 175 MVINGSIDYDGLGPVSWW 192
I GS+ GLG V WW
Sbjct: 176 YQIIGSMAETGLGCVLWW 193
>gi|348687463|gb|EGZ27277.1| hypothetical protein PHYSODRAFT_538886 [Phytophthora sojae]
Length = 228
Score = 124 bits (312), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 72/231 (31%), Positives = 115/231 (49%), Gaps = 44/231 (19%)
Query: 1 MFYLSKIEHTLRLPPHLLRLPLNEAIKLELENVFLDKVIANLGLCISIYDIKEIEGGFVY 60
MF L++I + + P L + + E++ + +KVIA++GLCI++YD I FV+
Sbjct: 1 MFVLTRISDVIPVAPELFDADYTQVLIEEIDRKYANKVIADVGLCITLYDFVSIGDAFVH 60
Query: 61 PGEGASTHTVKFRLVVFRPFVGEIIAAKLKESDANGLRLSLGFFEDIYVPSHLLPSPSRS 120
P +G S V+FRLVVFRPFVGE++ ++ +R+S+ F +DI +PS+ L +PS
Sbjct: 61 PSDGTSHSQVEFRLVVFRPFVGEVLKGRIVSCTEEHIRVSMDFVQDIIIPSYALQTPSY- 119
Query: 121 EPDPYGRYEVKWIWEF--GDTKYVIDGLDEIKFRVLSVNYPSI-------------PIEQ 165
+ E W+W++ G K+ +D +EI+FRV ++N+ + ++
Sbjct: 120 ----FDTAERLWVWKYSEGQEKFYMDLHEEIRFRVTNINFTRVTKTAKGIQATTTEATDK 175
Query: 166 AEGSKPFAPMV------------------------INGSIDYDGLGPVSWW 192
AE M I G+ID DGLG SWW
Sbjct: 176 AEKEVSAGDMRQSLARRRSSSVDLSDNDPTPSAIHILGTIDEDGLGLSSWW 226
>gi|169868152|ref|XP_001840650.1| polymerase III polypeptide H [Coprinopsis cinerea okayama7#130]
gi|116498254|gb|EAU81149.1| polymerase III polypeptide H [Coprinopsis cinerea okayama7#130]
Length = 227
Score = 124 bits (311), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 76/216 (35%), Positives = 116/216 (53%), Gaps = 31/216 (14%)
Query: 1 MFYLSKIEHTLRLPPHLLRLPLNEAIKLELENVFLDKVIANLGLCISIYDIKEIEGGFVY 60
MF L+ I+ T+ + P +P EAI EL + ++V+ ++GLCI ++D+ E+ G V
Sbjct: 1 MFSLAVIKDTVPIHPQHFGIPPEEAITAELNKKYANRVLHDVGLCICVFDLTEVGDGRVR 60
Query: 61 PGEGASTHTVKFRLVVFRPFVGEIIAAKLKESDANGLRLSLGFFEDIYVPSHLLPSPSRS 120
G+G + V FR+ VFRPFV E++ AK+K SD G+RL++GFF+DIY+P+ LP PS
Sbjct: 61 YGDGFLWYKVTFRMTVFRPFVSEVVVAKVKSSDERGIRLTMGFFDDIYIPAIYLPQPSV- 119
Query: 121 EPDPYGRYEVKWIW----EFGDT----------KYVIDGLDEIKFRVLSVNY---PSIPI 163
+ R+E + W D+ + ID + ++ RV + P+
Sbjct: 120 ----FDRHERAYFWLPDSPLTDSNDLLNTPTSERMYIDQNEVVRVRVEQDEFFDDEPGPV 175
Query: 164 EQAEG-------SKPFAPMVINGSIDYDGLGPVSWW 192
+ EG S+P P I SI GLGPV+WW
Sbjct: 176 KVVEGVVQERVTSRP--PYTITCSIAEQGLGPVAWW 209
>gi|225711416|gb|ACO11554.1| DNA-directed RNA polymerase III subunit RPC8 [Caligus
rogercresseyi]
Length = 203
Score = 124 bits (310), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 74/204 (36%), Positives = 114/204 (55%), Gaps = 17/204 (8%)
Query: 1 MFYLSKIEHTLRLPPHLLRLPLNEAIKLELENVFLDKVIANLGLCISIYDIKEIEGGFVY 60
MF LS+ + +RLP L L EA+ E+ ++V+ N+GL + ++DI EI F++
Sbjct: 1 MFVLSECKSLIRLPALHLGRNLPEALSEEINRKLSNRVVHNVGLAVCLFDILEIGESFLF 60
Query: 61 PGEGASTHTVKFRLVVFRPFVGEIIAAKLKESDANGLRLSLGFFEDIYVPSHLLPSPSRS 120
PG+GAS V FR++VFRPF+ E+I K+K +G+++SLGFFEDI++P L P R
Sbjct: 61 PGDGASHTRVNFRILVFRPFMEEVINGKIKSCSKDGVQVSLGFFEDIWIPPEALQHPYR- 119
Query: 121 EPDPYGRYEVKWIWEF----GDTKYV-IDGLDEIKFRVLSVNYPSIPIE---QAEG---- 168
+ + W+WE+ G+ + +D +EI+FRV + + AEG
Sbjct: 120 ----FDEADQVWVWEYPTEDGEKHDLFMDPGEEIRFRVTAETFSDTSPNVDPNAEGQSGE 175
Query: 169 SKPFAPMVINGSIDYDGLGPVSWW 192
S P I+ S++ GLG SWW
Sbjct: 176 SNDKIPYTISASVNEPGLGLHSWW 199
>gi|72021379|ref|XP_796543.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC8-like
[Strongylocentrotus purpuratus]
gi|72148305|ref|XP_795389.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC8-like
[Strongylocentrotus purpuratus]
Length = 203
Score = 124 bits (310), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 71/205 (34%), Positives = 113/205 (55%), Gaps = 18/205 (8%)
Query: 1 MFYLSKIEHTLRLPPHLLRLPLNEAIKLELENVFLDKVIANLGLCISIYDIKEIEGGFVY 60
MF L+++ T+R+ P L +AI EL +KV+ N+GLCI+++DI ++E ++
Sbjct: 1 MFVLAEMVDTVRIEPWLFNAKPIDAITEELNKKLANKVVPNVGLCIALHDIVKMEDSHIF 60
Query: 61 PGEGASTHTVKFRLVVFRPFVGEIIAAKLKESDANGLRLSLGFFEDIYVPSHLLPSPSRS 120
PG+GAS V FR VVF PF+ EI+ +++ +G+ +SLGFF+DI VP L P +
Sbjct: 61 PGDGASHTKVHFRFVVFHPFMDEILIGRIRSCSRDGVHISLGFFDDIVVPPEALQQPCK- 119
Query: 121 EPDPYGRYEVKWIWEF----GDTKYVIDGLDEIKFRVLS-VNYPSIPIEQAEGSKPFA-- 173
+ E W+W++ G +D +EI+FRV+ V + P+ +G + A
Sbjct: 120 ----FDETEQLWVWQYEAEEGTHDMFMDINEEIRFRVVDEVFTDTTPVGPEDGLEAGAEE 175
Query: 174 ------PMVINGSIDYDGLGPVSWW 192
P + GSI GLG ++WW
Sbjct: 176 NETKKSPYSLVGSISEPGLGLLAWW 200
>gi|409041829|gb|EKM51314.1| hypothetical protein PHACADRAFT_263362 [Phanerochaete carnosa
HHB-10118-sp]
Length = 226
Score = 124 bits (310), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 81/221 (36%), Positives = 117/221 (52%), Gaps = 36/221 (16%)
Query: 1 MFYLSKIEHTLRLPPHLLRLPLNEAIKLELENVFLDKVIANLGLCISIYDIKEIEGGFVY 60
MF LS I+ T+ + P LP +AI EL + ++V+ ++GLC+S++D+ E+ G V
Sbjct: 1 MFVLSIIKDTVAVHPSHFGLPPQQAITNELNKKYANRVLHDVGLCVSVFDLAEVGEGKVR 60
Query: 61 PGEGASTHTVKFRLVVFRPFVGEIIAAKLKESDANGLRLSLGFFEDIYVPSHLLPSPSRS 120
G+G + V FRLVVFRPF E+I AK+K SD +G+RL+LGFF+D+Y+P LP PS
Sbjct: 61 YGDGFLWYKVVFRLVVFRPFPSEVILAKVKSSDEDGIRLTLGFFDDVYIPRIFLPEPSAF 120
Query: 121 EPDPYGRYEVKWIW---------EFGDT----KYVIDGLDEIKFRVLSVNY----PSIPI 163
+P+ E + W + DT + ID + ++ RV + + P P
Sbjct: 121 DPN-----ERAYFWVADPDSVTPDLLDTPLTSRMYIDSSEVVRVRVEADEFYDDEPGPPK 175
Query: 164 EQA------------EGSKPFAPMVINGSIDYDGLGPVSWW 192
Q EG + AP I SI GLGPV WW
Sbjct: 176 AQEGVMANGQTSKEREGRR--APYTITCSIAEQGLGPVPWW 214
>gi|395325654|gb|EJF58073.1| polymerase III polypeptide H [Dichomitus squalens LYAD-421 SS1]
Length = 220
Score = 124 bits (310), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 78/211 (36%), Positives = 114/211 (54%), Gaps = 21/211 (9%)
Query: 1 MFYLSKIEHTLRLPPHLLRLPLNEAIKLELENVFLDKVIANLGLCISIYDIKEIEGGFVY 60
MF LS I+ T+ + P L +AI EL + ++V+ ++GLCI ++D+ E+ G V
Sbjct: 1 MFQLSIIKDTVAVHPSQFGLSPEQAITNELNKKYANRVLHDVGLCICVFDLAEVGEGKVR 60
Query: 61 PGEGASTHTVKFRLVVFRPFVGEIIAAKLKESDANGLRLSLGFFEDIYVPSHLLPSPSRS 120
G+G + V FRL VFRPF E+I AK+K SD +G+RL++GFF+DIYVP LP P+
Sbjct: 61 YGDGCLWYKVVFRLTVFRPFASEVIIAKVKSSDEDGVRLTVGFFDDIYVPLVYLPEPTAF 120
Query: 121 EPDPYGRY-----EVKWIWEFGDT----KYVIDGLDEIKFRVLSVNY----PSIP----- 162
+P + E E D+ + ID D ++ RV S + P P
Sbjct: 121 DPKERAHFWLPGSEATSTHELLDSPLTDRMYIDAGDVVRVRVESDQFHDDEPGPPKAHEG 180
Query: 163 IEQ-AEGSKPFAPMVINGSIDYDGLGPVSWW 192
++Q E +P P I S+ GLGP+SWW
Sbjct: 181 VQQIIENRRP--PYTITCSMSEQGLGPISWW 209
>gi|344304860|gb|EGW35092.1| subunit of RNA polymerase [Spathaspora passalidarum NRRL Y-27907]
Length = 196
Score = 124 bits (310), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 71/200 (35%), Positives = 112/200 (56%), Gaps = 13/200 (6%)
Query: 1 MFYLSKIEHTLRLPPHLLRLPLNEAIKLELENVFLDKVIANLGLCISIYDIKEIEGGFVY 60
MF L++I +R+PPH +P+ +I EL +KVIANLGL I+I+D+ +I+ G +
Sbjct: 1 MFVLTEITDLVRIPPHTFNIPIQHSITDELNKKLANKVIANLGLVITIWDLLDIKDGLLK 60
Query: 61 PGEGASTHTVKFRLVVFRPFVGEIIAAKLKESDANGLRLSLGFFEDIYVPSHLLPSPSRS 120
PG+G S V+FR VV++PFVGE++ + E G+++ L FF++I++P L
Sbjct: 61 PGDGGSYVEVQFRCVVWKPFVGEVLTGWVSECTPQGIKIRLEFFDEIFIPRAYLFEGCEF 120
Query: 121 EPDPYGRYEVKWIWE-FGDTKYVIDGLDEIKFRV---LSVNYPSIPIEQAEG----SKPF 172
+P E W+W+ +T+ ID ++I+FRV + VN +A G +
Sbjct: 121 KP-----VEKAWVWKPDEETELFIDINEKIRFRVEQEIFVNIKPKSSNEAVGLEEPTNKA 175
Query: 173 APMVINGSIDYDGLGPVSWW 192
P I S +G+G VSWW
Sbjct: 176 PPYAIMASCQTEGMGCVSWW 195
>gi|409081111|gb|EKM81470.1| hypothetical protein AGABI1DRAFT_35937 [Agaricus bisporus var.
burnettii JB137-S8]
gi|426196321|gb|EKV46249.1| hypothetical protein AGABI2DRAFT_70931 [Agaricus bisporus var.
bisporus H97]
Length = 227
Score = 123 bits (309), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 72/212 (33%), Positives = 118/212 (55%), Gaps = 20/212 (9%)
Query: 1 MFYLSKIEHTLRLPPHLLRLPLNEAIKLELENVFLDKVIANLGLCISIYDIKEIEGGFVY 60
MF LS I+ T+ + P +P +EAI EL + ++V+ ++GLCI ++D+ ++ G V
Sbjct: 1 MFSLSIIKDTVAVQPSQFGVPADEAITAELNKKYANRVLHDVGLCICVFDLTQVGEGKVR 60
Query: 61 PGEGASTHTVKFRLVVFRPFVGEIIAAKLKESDANGLRLSLGFFEDIYVPSHLLPSPSRS 120
G+G + FR+V+FRPF+ E++ AK+K SD +G+RL++GFF+DIY+P+ LP PS
Sbjct: 61 YGDGCLWYKTVFRMVIFRPFISEVVIAKVKSSDEDGIRLTMGFFDDIYIPTAYLPQPSTF 120
Query: 121 EPDPYGRY--------EVKWIWEFGDT----KYVIDGLDEIKFRVLSVNYPSI---PIEQ 165
+ + + E + D+ + ID + ++ RV + ++ P +
Sbjct: 121 DSNERAHFWLPPGEESEAPTSQQLLDSPVADRMYIDQGEVLRVRVEAEDFYDDEPGPPKM 180
Query: 166 AEGSK-----PFAPMVINGSIDYDGLGPVSWW 192
AEG + AP I SI GLGPV+WW
Sbjct: 181 AEGVQVVRDPKRAPYNIICSIAEQGLGPVAWW 212
>gi|237838547|ref|XP_002368571.1| RNA polymerase Rpb7, N-terminal domain-containing protein [Toxoplasma
gondii ME49]
gi|211966235|gb|EEB01431.1| RNA polymerase Rpb7, N-terminal domain-containing protein [Toxoplasma
gondii ME49]
Length = 1215
Score = 123 bits (309), Expect = 3e-26, Method: Composition-based stats.
Identities = 66/204 (32%), Positives = 108/204 (52%), Gaps = 17/204 (8%)
Query: 1 MFYLSKIEHTLRLPPHLLRLPLNEAIKLELENVFLDKVIANLGLCISIYDIKEIEGGFVY 60
MF +S ++ + + P E ++ +E +L+KV+ N GL ++ Y+++ I+ +
Sbjct: 1016 MFVISLLQDAVSVLPETQMKNQGEVLRKAIEEKYLNKVVVNCGLAVAFYELRRIQSATIR 1075
Query: 61 PGEGASTHTVKFRLVVFRPFVGEIIAAKLKESDANGLRLSLGFFEDIYVPSHLLPSPSRS 120
G+G++ + V+F LV FRPF GEI+ L SD +GLR+SLGFF D+Y+P+ L
Sbjct: 1076 SGDGSARYKVEFSLVFFRPFQGEILEGTLMHSDNHGLRISLGFFHDVYIPAAAL-----R 1130
Query: 121 EPDPYGRYEVKWIWEFGDTKYVIDGLDE-IKFRVLSVNYPSIPIEQAEGSKP-------- 171
EP + +W W F D + L + I+FRV + + + G+
Sbjct: 1131 EPKGFNAASERWWWGFEDHELEYAPLQQAIRFRVQEIRFDQALADGNGGAGTQELVAGAE 1190
Query: 172 ---FAPMVINGSIDYDGLGPVSWW 192
APMV+ G++D DGLG +WW
Sbjct: 1191 RMGLAPMVVLGAVDDDGLGMKTWW 1214
>gi|221505857|gb|EEE31502.1| RNA polymerase Rpb7, N-terminal domain-containing protein, putative
[Toxoplasma gondii VEG]
Length = 1221
Score = 123 bits (309), Expect = 3e-26, Method: Composition-based stats.
Identities = 66/204 (32%), Positives = 108/204 (52%), Gaps = 17/204 (8%)
Query: 1 MFYLSKIEHTLRLPPHLLRLPLNEAIKLELENVFLDKVIANLGLCISIYDIKEIEGGFVY 60
MF +S ++ + + P E ++ +E +L+KV+ N GL ++ Y+++ I+ +
Sbjct: 1022 MFVISLLQDAVSVLPETQMKNQGEVLRKAIEEKYLNKVVVNCGLAVAFYELRRIQSATIR 1081
Query: 61 PGEGASTHTVKFRLVVFRPFVGEIIAAKLKESDANGLRLSLGFFEDIYVPSHLLPSPSRS 120
G+G++ + V+F LV FRPF GEI+ L SD +GLR+SLGFF D+Y+P+ L
Sbjct: 1082 SGDGSARYKVEFSLVFFRPFQGEILEGTLMHSDNHGLRISLGFFHDVYIPAAAL-----R 1136
Query: 121 EPDPYGRYEVKWIWEFGDTKYVIDGLDE-IKFRVLSVNYPSIPIEQAEGSKP-------- 171
EP + +W W F D + L + I+FRV + + + G+
Sbjct: 1137 EPKGFNAASERWWWGFEDHELEYAPLQQAIRFRVQEIRFDQALADGNGGAGTQELVAGAE 1196
Query: 172 ---FAPMVINGSIDYDGLGPVSWW 192
APMV+ G++D DGLG +WW
Sbjct: 1197 RMGLAPMVVLGAVDDDGLGMKTWW 1220
>gi|313225157|emb|CBY20950.1| unnamed protein product [Oikopleura dioica]
gi|313240114|emb|CBY32466.1| unnamed protein product [Oikopleura dioica]
Length = 199
Score = 123 bits (309), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 69/200 (34%), Positives = 104/200 (52%), Gaps = 10/200 (5%)
Query: 1 MFYLSKIEHTLRLPPHLLRLPLNEAIKLELENVFLDKVIANLGLCISIYDIKEIEGGFVY 60
MF L E +++ P L L ++ + EL +KV GLCI ++DI ++ +
Sbjct: 1 MFELVTFEDYVKIEPVLFNKDLADSCRTELNRKLANKVYQRAGLCICMHDILKVGDSAIL 60
Query: 61 PGEGASTHTVKFRLVVFRPFVGEIIAAKLKESDANGLRLSLGFFEDIYVPSHLLPSPSRS 120
PGEG +KFR +VFRPF+ E++ K++ GLRL++GFF+DI+VP +P+P+
Sbjct: 61 PGEGLCRTYIKFRFIVFRPFIREVLVGKVRSCSREGLRLTIGFFDDIFVPKKYIPAPNEF 120
Query: 121 EPDPYGRYEVKWIWEFGDTK-------YVIDGLDEIKFRVL-SVNYPSIPIEQAEGSKPF 172
+ KWIW F D + + I E++FRV V +P + P
Sbjct: 121 VQSEGAKG--KWIWTFVDEEDPEETESHEIVERIELRFRVKEEVFEECLPQTPDSAAVPT 178
Query: 173 APMVINGSIDYDGLGPVSWW 192
P I +ID GLGP+SWW
Sbjct: 179 IPYKIVATIDEQGLGPLSWW 198
>gi|393221996|gb|EJD07480.1| hypothetical protein FOMMEDRAFT_143872 [Fomitiporia mediterranea
MF3/22]
Length = 243
Score = 123 bits (309), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 80/220 (36%), Positives = 115/220 (52%), Gaps = 30/220 (13%)
Query: 1 MFYLSKIEHTLRLPPHLLRLPLNEAIKLELENVFLDKVIANLGLCISIYDIKEIEGGFVY 60
MF LS I+ T+ L P LP +AI EL + ++V+ ++GLCI ++DI + G V
Sbjct: 1 MFVLSTIKDTVALQPSTFALPAEQAIINELNKKYANRVLHDVGLCICVFDIAQAGEGKVR 60
Query: 61 PGEGASTHTVKFRLVVFRPFVGEIIAAKLKESDANGLRLSLGFFEDIYVPSHLLPSPSRS 120
G+G H V FR+VVFRPF GE+I AK+K SD G+RLS+GFF+D+++P LP+PS
Sbjct: 61 YGDGCLWHRVVFRMVVFRPFSGEVILAKVKSSDEEGIRLSIGFFDDMHIPPSYLPAPSAF 120
Query: 121 EPDPYGRY-------------EVKWIWEFGDT----KYVIDGLDEIKFRVLSVNY----P 159
+P + V E DT + ID + ++ RV + + P
Sbjct: 121 DPSERAYFWIAKHAPLEEDPEHVCTQHELLDTPTSERMYIDTGEVLRVRVETDEFYDDEP 180
Query: 160 SIP-------IEQAEGSKPFAPMVINGSIDYDGLGPVSWW 192
P +AE +P P I SI GLGP++WW
Sbjct: 181 GPPRASEGVMSTKAERRRP--PYSIICSIAEQGLGPLAWW 218
>gi|226466694|emb|CAX69482.1| polymerase (RNA) III (DNA directed) polypeptide H [Schistosoma
japonicum]
Length = 212
Score = 122 bits (307), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 76/215 (35%), Positives = 114/215 (53%), Gaps = 28/215 (13%)
Query: 1 MFYLSKIEHTLRLPPHLLRLPLNEAIKLELENVFLDKVIANLGLCISIYDIKEIEGGFVY 60
MF L + T+ + P+ + + E I+ EL + KVI +GLCIS++DI ++E F+
Sbjct: 1 MFVLVSLRDTVVIKPNYIGSNMKEIIEQELNSRLCSKVIYKVGLCISLWDILKVEESFIS 60
Query: 61 PGEGASTHTVKFRLVVFRPFVGEIIAAKLKESDANGLRLSLGFFEDIYVPSHLLPSPSRS 120
+G+ TV FR+V FRPF+ EI+ +K GLR+SL FF+DI++P+ L SPSR
Sbjct: 61 DVDGSYYTTVSFRIVCFRPFIDEILIGIVKSLSKTGLRVSLNFFDDIFIPAEKLRSPSR- 119
Query: 121 EPDPYGRYEVKWIWEF---GDTKYV-IDGLDEIKFRVLS--------------VNYPSIP 162
Y + WIWE+ G+T + ID D I+FRV+ + + P
Sbjct: 120 ----YDYEQNAWIWEYAYEGETAELRIDKHDTIRFRVVEEIWCDPNPDNDKTICSTSNDP 175
Query: 163 IEQAEG-----SKPFAPMVINGSIDYDGLGPVSWW 192
++G ++ AP I GS+ DGLG WW
Sbjct: 176 SGYSDGNSDSLTESKAPYTIIGSVVADGLGVTCWW 210
>gi|392564956|gb|EIW58133.1| polymerase III polypeptide H [Trametes versicolor FP-101664 SS1]
Length = 220
Score = 122 bits (307), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 74/210 (35%), Positives = 115/210 (54%), Gaps = 19/210 (9%)
Query: 1 MFYLSKIEHTLRLPPHLLRLPLNEAIKLELENVFLDKVIANLGLCISIYDIKEIEGGFVY 60
MF LS I+ T+ + P LP +A+ EL + ++V+ ++GLCI ++D+ E+ G V
Sbjct: 1 MFQLSIIKDTVAIHPSQFGLPPQQAVTNELNKKYANRVLHDVGLCICVFDLSEVGEGKVR 60
Query: 61 PGEGASTHTVKFRLVVFRPFVGEIIAAKLKESDANGLRLSLGFFEDIYVPSHLLPSPSRS 120
G+G + V FRLVVFRPF E++ A++K SD +G+RL++GFF+DIYVP LP P+
Sbjct: 61 YGDGCLWYKVVFRLVVFRPFASEVLLARVKSSDEDGIRLTVGFFDDIYVPLVYLPEPTAF 120
Query: 121 EPDPYGRY-----EVKWIWEFGDT----KYVIDGLDEIKFRVLSVNY----PSIP----- 162
+ + E E D+ + ID D ++ RV S + P P
Sbjct: 121 DSKERAHFWLPGSEATSSHELLDSALTDRMYIDTGDVVRVRVESDEFHDDEPGPPKAHEG 180
Query: 163 IEQAEGSKPFAPMVINGSIDYDGLGPVSWW 192
++Q + ++ +P I S+ GLGP SWW
Sbjct: 181 VQQVQENRR-SPYTITCSMAEQGLGPTSWW 209
>gi|301090703|ref|XP_002895556.1| DNA-directed RNA polymerase III subunit RPC8, putative
[Phytophthora infestans T30-4]
gi|262097819|gb|EEY55871.1| DNA-directed RNA polymerase III subunit RPC8, putative
[Phytophthora infestans T30-4]
Length = 228
Score = 122 bits (306), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 71/231 (30%), Positives = 114/231 (49%), Gaps = 44/231 (19%)
Query: 1 MFYLSKIEHTLRLPPHLLRLPLNEAIKLELENVFLDKVIANLGLCISIYDIKEIEGGFVY 60
MF L++I + + P L + + E++ + +KVIA++GLCI++YD I FV+
Sbjct: 1 MFVLTRISDVIPVAPELFDADYTQVLIEEIDRKYANKVIADVGLCITLYDFVSIGDAFVH 60
Query: 61 PGEGASTHTVKFRLVVFRPFVGEIIAAKLKESDANGLRLSLGFFEDIYVPSHLLPSPSRS 120
P +G S V+FRLVVFRPFVGE++ ++ +R+S+ F +DI +PS+ L +PS
Sbjct: 61 PSDGTSHSQVEFRLVVFRPFVGEVLKGRIVSCTEEHIRVSMDFVQDIIIPSYALQTPSY- 119
Query: 121 EPDPYGRYEVKWIWEF--GDTKYVIDGLDEIKFRVLSVNYPSI-------------PIEQ 165
+ E W+W++ G K+ +D +EI+FRV ++N+ + ++
Sbjct: 120 ----FDTAERLWVWKYSEGQEKFYMDLHEEIRFRVTNINFTRVTKTAKGIQATTTEATDK 175
Query: 166 AEGSKPFAPMV------------------------INGSIDYDGLGPVSWW 192
AE M I +ID DGLG SWW
Sbjct: 176 AEKEISAGDMRQSLARRRSSSVDLSDNDPTPSAIHILATIDEDGLGLSSWW 226
>gi|417414291|gb|JAA53443.1| Putative dna-directed rna polymerase iii subunit rpc8, partial
[Desmodus rotundus]
Length = 192
Score = 122 bits (305), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 71/195 (36%), Positives = 107/195 (54%), Gaps = 19/195 (9%)
Query: 1 MFYLSKIEHTLRLPPHLLRLPLNEAIKLELENVFLDKVIANLGLCISIYDIKEIEGGFVY 60
MF L ++ T+R+PP LN++I EL +KV+ N+GLCI ++DI ++E +V+
Sbjct: 1 MFVLVEMVDTVRIPPWQFERKLNDSIAEELNKKLANKVVYNVGLCICLFDITKLEDSYVF 60
Query: 61 PGEGASTHTVKFRLVVFRPFVGEIIAAKLKESDANGLRLSLGFFEDIYVPSHLLPSPSRS 120
PG+GAS V FR VVF PF+ EI+ K+K G+ +SLGFF+DI +P L P++
Sbjct: 61 PGDGASHTKVHFRYVVFHPFLDEILIGKIKGCSPEGVHVSLGFFDDILIPPESLQQPAK- 119
Query: 121 EPDPYGRYEVKWIWEF----GDTKYVIDGLDEIKFRVLSVNY----PSIPIEQAEGS--- 169
+ E W+WE+ G +D +E++FRV+ ++ PS P S
Sbjct: 120 ----FDEAEQMWVWEYETEEGAHDLYMDIGEEVRFRVVDESFVDTSPSGPSSAEAASTSE 175
Query: 170 ---KPFAPMVINGSI 181
K AP + GSI
Sbjct: 176 ELPKKEAPYTLVGSI 190
>gi|321478047|gb|EFX89005.1| hypothetical protein DAPPUDRAFT_41099 [Daphnia pulex]
Length = 204
Score = 122 bits (305), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 69/207 (33%), Positives = 113/207 (54%), Gaps = 20/207 (9%)
Query: 1 MFYLSKIEHTLRLPPHLLRLPLNEAIKLELENVFLDKVIANLGLCISIYDIKEIEGGFVY 60
MF L+ ++ T+R+P +++AI EL F +KV+ ++GLCI+++DI + F+
Sbjct: 1 MFVLALVKQTVRVPSEKFNRDIDQAISEELNLKFANKVVLDVGLCIALWDIIKRGESFIL 60
Query: 61 PGEGASTHTVKFRLVVFRPFVGEIIAAKLKESDANGLRLSLGFFEDIYVPSHLLPSPSRS 120
PG+ V+FR VVFRPF+ +I+ ++K D +++SLGFF++I++ S L SR
Sbjct: 61 PGDSGHHTKVEFRYVVFRPFMEQILVGRIKNCDKESVQVSLGFFDEIFISSENLQKNSR- 119
Query: 121 EPDPYGRYEVKWIWEF----GDTKYVIDGLDEIKFRVLSVNY----PSIPIEQAEGS--- 169
+ E W+WE+ G +D +EI+F+V++ + PS P +A S
Sbjct: 120 ----FDETEQTWVWEYQSEDGKHDLFMDTGEEIRFKVVAEYFADTTPSGPSNEAPDSSLD 175
Query: 170 ----KPFAPMVINGSIDYDGLGPVSWW 192
IN SI+ GLG +SWW
Sbjct: 176 PIRDNKRMAYRINASINESGLGLLSWW 202
>gi|365759736|gb|EHN01510.1| Rpc25p [Saccharomyces cerevisiae x Saccharomyces kudriavzevii VIN7]
Length = 212
Score = 121 bits (304), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 78/216 (36%), Positives = 113/216 (52%), Gaps = 29/216 (13%)
Query: 1 MFYLSKIEHTLRLPPHLLRLPLNEAIKLELENVFLDKVIANLGLCISIYDIKEIEGGFVY 60
MF LSKI +R+PP AI +L N F +K+I N+GLCI+IYD+ +E G +
Sbjct: 1 MFILSKIADLVRIPPDQFHRDTISAITHQLNNKFTNKIIPNVGLCITIYDLLVVEEGQLK 60
Query: 61 PGEGASTHTVKFRLVVFRPFVGEIIAAKLKESDANGLRLS-LGFFEDIYVPSHLLPSPSR 119
PG+G+S V FR VVF+PF+GEI+ + + A G+++S LG F+DI++P ++L
Sbjct: 61 PGDGSSYINVTFRAVVFKPFLGEIVTGWISKCTAEGIKVSVLGIFDDIFIPQNMLFEGCY 120
Query: 120 SEPDPYGRYEVKWIWEFG-DTKYVIDGLDEIKFRVLSVNY----PSIPIEQA-------- 166
P+ E WIW +TK D ++I+FR+ + P P E+
Sbjct: 121 YTPE-----EGAWIWPMDEETKLYFDVNEKIRFRIEREVFVDVKPKSPKERELEEKAQLE 175
Query: 167 ---EGSKPFAPMV-------INGSIDYDGLGPVSWW 192
EG AP + GS DG+G VSWW
Sbjct: 176 KEIEGKNEEAPQTEKPPAYALLGSCQTDGMGLVSWW 211
>gi|156098288|ref|XP_001615176.1| RNA polymerase Rpb7, N-terminal domain containing protein
[Plasmodium vivax Sal-1]
gi|148804050|gb|EDL45449.1| RNA polymerase Rpb7, N-terminal domain containing protein
[Plasmodium vivax]
Length = 186
Score = 121 bits (304), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 70/192 (36%), Positives = 102/192 (53%), Gaps = 7/192 (3%)
Query: 1 MFYLSKIEHTLRLPPHLLRLPLNEAIKLELENVFLDKVIANLGLCISIYDIKEIEGGFVY 60
MF L +IE +++ PH + L I+ + ++DKV+ N+GLC+ +YDI E++ +
Sbjct: 1 MFSLFRIEDVIKIEPHFMEEELKNVIEFLIRAKYVDKVLQNVGLCVGLYDILEVKNREIL 60
Query: 61 PGEGASTHTVKFRLVVFRPFVGEIIAAKLKESDANGLRLSLGFFEDIYVPSHLLPSPSRS 120
G G V FRLV F+PF EII +K SD+NG+ +S+GFFE+I V L
Sbjct: 61 KGTGEIRFDVIFRLVYFQPFENEIIEGFVKNSDSNGIIISIGFFENIRVNCANL-----R 115
Query: 121 EPDPYGRYEVKWIWEFGDTKYVIDGLDEIKFRVLSVNYPSIPIEQAEGSKPFAPMVINGS 180
EP + + +W W F K+ + I+ RVL Y S P E + M I G+
Sbjct: 116 EPKEFDMEKKEWYWTFEGIKFFYTKDELIRVRVLDT-YFSDPNEMRKDETT-PSMSITGT 173
Query: 181 IDYDGLGPVSWW 192
+ DGLG V WW
Sbjct: 174 VQQDGLGLVKWW 185
>gi|401840255|gb|EJT43152.1| RPC25-like protein [Saccharomyces kudriavzevii IFO 1802]
Length = 212
Score = 121 bits (304), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 78/216 (36%), Positives = 113/216 (52%), Gaps = 29/216 (13%)
Query: 1 MFYLSKIEHTLRLPPHLLRLPLNEAIKLELENVFLDKVIANLGLCISIYDIKEIEGGFVY 60
MF LSKI +R+PP AI +L N F +K+I N+GLCI+IYD+ +E G +
Sbjct: 1 MFILSKIADLVRIPPDQFHRDTISAITHQLNNKFTNKIIPNVGLCITIYDLLVVEEGQLK 60
Query: 61 PGEGASTHTVKFRLVVFRPFVGEIIAAKLKESDANGLRLS-LGFFEDIYVPSHLLPSPSR 119
PG+G+S V FR VVF+PF+GEI+ + + A G+++S LG F+DI++P ++L
Sbjct: 61 PGDGSSYINVTFRAVVFKPFLGEIVTGWISKCTAEGIKVSLLGIFDDIFIPQNMLFEGCY 120
Query: 120 SEPDPYGRYEVKWIWEFG-DTKYVIDGLDEIKFRVLSVNY----PSIPIEQA-------- 166
P+ E WIW +TK D ++I+FR+ + P P E+
Sbjct: 121 YTPE-----EGAWIWPMDEETKLYFDVNEKIRFRIEREVFVDVKPKSPKERELEEKAQLE 175
Query: 167 ---EGSKPFAPMV-------INGSIDYDGLGPVSWW 192
EG AP + GS DG+G VSWW
Sbjct: 176 KEIEGKNEEAPQTEKPPAYALLGSCQTDGMGLVSWW 211
>gi|221113754|ref|XP_002163071.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC8-like [Hydra
magnipapillata]
Length = 202
Score = 121 bits (304), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 66/206 (32%), Positives = 107/206 (51%), Gaps = 19/206 (9%)
Query: 1 MFYLSKIEHTLRLPPHLLRLPLNEAIKLELENVFLDKVIANLGLCISIYDIKEIEGGFVY 60
MF L++++ +++ P+ +++ L F +KV+ N+GLCI ++DI I ++
Sbjct: 1 MFLLAEMKDVIQIMPYNFGHDFKSSLEFSLNKKFANKVVHNVGLCIVLFDITHIGDSYIL 60
Query: 61 PGEGASTHTVKFRLVVFRPFVGEIIAAKLKESDANGLRLSLGFFEDIYVPSHLLPSPSRS 120
PG GAS V FR +VFRPF+ E++ AK+K G+++SLGFF+DI++P L S+
Sbjct: 61 PGNGASHTPVTFRFIVFRPFIDEVLVAKVKSCTREGVQVSLGFFDDIFIPYEYLQQKSK- 119
Query: 121 EPDPYGRYEVKWIWEF----GDTKYVIDGLDEIKFRVLSVNY----------PSIPIEQA 166
+ E W+W++ G +D +EI+ RV+ + P+I E
Sbjct: 120 ----FVDAEQLWVWQYETEEGSHDLYMDINEEIRIRVIDEEFLDLTPEGPAPPTIEGETK 175
Query: 167 EGSKPFAPMVINGSIDYDGLGPVSWW 192
P I SI GLG +SWW
Sbjct: 176 SLETKKLPYTITASISESGLGLLSWW 201
>gi|118792599|ref|XP_320407.3| AGAP012122-PA [Anopheles gambiae str. PEST]
gi|116116974|gb|EAA00210.3| AGAP012122-PA [Anopheles gambiae str. PEST]
Length = 244
Score = 121 bits (304), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 76/218 (34%), Positives = 113/218 (51%), Gaps = 31/218 (14%)
Query: 1 MFYLSKIEHTLRLPPHLLRLPLNEAIKLELENVFLDKVIANLGLCISIYDIKEIEGGFVY 60
MF L++++ +R+ P L L L EAIK E+ +KV+ N+GLCI++ DI ++ +
Sbjct: 1 MFVLAELKDNVRIAPELFGLKLPEAIKDEINRKLANKVLLNVGLCIALKDIVKLGDSIIL 60
Query: 61 PGEGASTHTVKFRLVVFRPFVGEIIAAKLKESDANGLRLSLGFFEDIYVPSHLLPSPSRS 120
PG+GAS V FR +VFRP +G++I K++ G+ ++LGFF+DI +P L PSR
Sbjct: 61 PGDGASHTEVNFRYIVFRPMIGDVITGKIRSCSREGVHITLGFFDDILIPPSALQHPSR- 119
Query: 121 EPDPYGRYEVKWIWEF----GDTKYV-IDGLDEIKFRVLS-VNYPSIPIEQAEGSKPF-- 172
Y E W+WE+ G+T + +D + IKFRV V S PI + P
Sbjct: 120 ----YEEAEQAWVWEYPLEDGNTHDLYMDIGENIKFRVSGEVFEESSPIGPPDQEVPSSS 175
Query: 173 ------------------APMVINGSIDYDGLGPVSWW 192
P I +I+ GLG +SWW
Sbjct: 176 TGASTSGGAGSSGQESNKTPYRIVAAINESGLGLLSWW 213
>gi|444723804|gb|ELW64434.1| DNA-directed RNA polymerase III subunit RPC8 [Tupaia chinensis]
Length = 201
Score = 121 bits (303), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 74/206 (35%), Positives = 111/206 (53%), Gaps = 22/206 (10%)
Query: 1 MFYLSKIEHTLRLPPHLLRLPLNEAIKLELENVFLDKVIANLGLCISIYDIKEIEGGFVY 60
MF L ++ T+R+PP LN++I EL +KV+ ++GLCI ++DI ++E +V+
Sbjct: 1 MFVLVEMVDTVRIPPWQFERKLNDSIAEELNKKLANKVVYSVGLCICLFDITKLEDAYVF 60
Query: 61 PGEGASTHTVKFRLVVFRPFVGEIIAAKLKESDANGLRLSLGFFEDIYVPSHLLPSPSRS 120
PG+GAS V FR VVF PF+ EI+ K++ G+ GFF+DI +P L P++
Sbjct: 61 PGDGASHTKVHFRYVVFHPFLDEILIGKIRGCSPEGVH---GFFDDILIPPESLQQPAK- 116
Query: 121 EPDPYGRYEVKWIWEF----GDTKYVIDGLDEIKFRVLSVNY----PSIPIEQAEGS--- 169
+ E W+WE+ G +D +EI+FRV+ ++ PS P S
Sbjct: 117 ----FDEAEQVWVWEYETEEGAHDLYMDTGEEIRFRVVDESFVDTSPSGPSSAEATSSSE 172
Query: 170 ---KPFAPMVINGSIDYDGLGPVSWW 192
K AP + GSI GLG +SWW
Sbjct: 173 ELPKKEAPYTLVGSISEPGLGLLSWW 198
>gi|148672601|gb|EDL04548.1| polymerase (RNA) III (DNA directed) polypeptide H, isoform CRA_b
[Mus musculus]
Length = 189
Score = 121 bits (303), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 62/162 (38%), Positives = 96/162 (59%), Gaps = 9/162 (5%)
Query: 1 MFYLSKIEHTLRLPPHLLRLPLNEAIKLELENVFLDKVIANLGLCISIYDIKEIEGGFVY 60
MF L ++ T+R+PP LN++I EL +KV+ N+GLCI ++DI ++E +V+
Sbjct: 1 MFVLVEMVDTVRIPPWQFERKLNDSIAEELNKKLANKVVYNVGLCICLFDITKLEDAYVF 60
Query: 61 PGEGASTHTVKFRLVVFRPFVGEIIAAKLKESDANGLRLSLGFFEDIYVPSHLLPSPSRS 120
PG+GAS V FR VVF PF+ EI+ K+K G+ +SLGFF+DI +P L P++
Sbjct: 61 PGDGASHTKVHFRYVVFHPFLDEILIGKIKGCSPEGVHVSLGFFDDILIPPESLQQPAK- 119
Query: 121 EPDPYGRYEVKWIWEF----GDTKYVIDGLDEIKFRVLSVNY 158
+ E W+WE+ G +D +EI+FRV+ ++
Sbjct: 120 ----FDEAEQVWVWEYETEEGAHDLYMDTGEEIRFRVVDESF 157
>gi|112490174|pdb|2CKZ|B Chain B, X-Ray Structure Of Rna Polymerase Iii Subcomplex C17-C25.
gi|112490176|pdb|2CKZ|D Chain D, X-Ray Structure Of Rna Polymerase Iii Subcomplex C17-C25
Length = 218
Score = 121 bits (303), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 77/216 (35%), Positives = 112/216 (51%), Gaps = 29/216 (13%)
Query: 1 MFYLSKIEHTLRLPPHLLRLPLNEAIKLELENVFLDKVIANLGLCISIYDIKEIEGGFVY 60
MF LSKI +R+PP AI +L N F +K+I N+GLCI+IYD+ +E G +
Sbjct: 1 MFILSKIADLVRIPPDQFHRDTISAITHQLNNKFANKIIPNVGLCITIYDLLTVEEGQLK 60
Query: 61 PGEGASTHTVKFRLVVFRPFVGEIIAAKLKESDANGLRLS-LGFFEDIYVPSHLLPSPSR 119
PG+G+S V FR VVF+PF+GEI+ + + A G+++S LG F+DI++P ++L
Sbjct: 61 PGDGSSYINVTFRAVVFKPFLGEIVTGWISKCTAEGIKVSLLGIFDDIFIPQNMLFEGCY 120
Query: 120 SEPDPYGRYEVKWIWEFG-DTKYVIDGLDEIKFRVLSVNY----PSIPIEQA-------- 166
P+ E WIW +TK D ++I+FR+ + P P E+
Sbjct: 121 YTPE-----ESAWIWPMDEETKLYFDVNEKIRFRIEREVFVDVKPKSPKERELEERAQLE 175
Query: 167 ---EGSKPFAPM-------VINGSIDYDGLGPVSWW 192
EG P + GS DG+G VSWW
Sbjct: 176 NEIEGKNEETPQNEKPPAYALLGSCQTDGMGLVSWW 211
>gi|6322705|ref|NP_012778.1| Rpc25p [Saccharomyces cerevisiae S288c]
gi|549722|sp|P35718.1|RPC8_YEAST RecName: Full=DNA-directed RNA polymerase III subunit RPC8;
Short=RNA polymerase III subunit C8; AltName:
Full=DNA-directed RNA polymerase III 25 kDa polypeptide;
AltName: Full=RNA polymerase III subunit C25
gi|396435|emb|CAA80954.1| unknown function [Saccharomyces cerevisiae]
gi|486247|emb|CAA81985.1| RPC25 [Saccharomyces cerevisiae]
gi|516561|gb|AAA20241.1| RNA polymerase III C25 subunit [Saccharomyces cerevisiae]
gi|151941663|gb|EDN60025.1| RNA polymerase C [Saccharomyces cerevisiae YJM789]
gi|190409694|gb|EDV12959.1| DNA-directed RNA polymerase III 25 kDa polypeptide [Saccharomyces
cerevisiae RM11-1a]
gi|256271085|gb|EEU06184.1| Rpc25p [Saccharomyces cerevisiae JAY291]
gi|285813121|tpg|DAA09018.1| TPA: Rpc25p [Saccharomyces cerevisiae S288c]
gi|323308337|gb|EGA61583.1| Rpc25p [Saccharomyces cerevisiae FostersO]
gi|349579425|dbj|GAA24587.1| K7_Rpc25p [Saccharomyces cerevisiae Kyokai no. 7]
gi|365764539|gb|EHN06061.1| Rpc25p [Saccharomyces cerevisiae x Saccharomyces kudriavzevii VIN7]
gi|392298294|gb|EIW09392.1| Rpc25p [Saccharomyces cerevisiae CEN.PK113-7D]
Length = 212
Score = 121 bits (303), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 77/216 (35%), Positives = 112/216 (51%), Gaps = 29/216 (13%)
Query: 1 MFYLSKIEHTLRLPPHLLRLPLNEAIKLELENVFLDKVIANLGLCISIYDIKEIEGGFVY 60
MF LSKI +R+PP AI +L N F +K+I N+GLCI+IYD+ +E G +
Sbjct: 1 MFILSKIADLVRIPPDQFHRDTISAITHQLNNKFANKIIPNVGLCITIYDLLTVEEGQLK 60
Query: 61 PGEGASTHTVKFRLVVFRPFVGEIIAAKLKESDANGLRLS-LGFFEDIYVPSHLLPSPSR 119
PG+G+S V FR VVF+PF+GEI+ + + A G+++S LG F+DI++P ++L
Sbjct: 61 PGDGSSYINVTFRAVVFKPFLGEIVTGWISKCTAEGIKVSLLGIFDDIFIPQNMLFEGCY 120
Query: 120 SEPDPYGRYEVKWIWEFG-DTKYVIDGLDEIKFRVLSVNY----PSIPIEQA-------- 166
P+ E WIW +TK D ++I+FR+ + P P E+
Sbjct: 121 YTPE-----ESAWIWPMDEETKLYFDVNEKIRFRIEREVFVDVKPKSPKERELEERAQLE 175
Query: 167 ---EGSKPFAPM-------VINGSIDYDGLGPVSWW 192
EG P + GS DG+G VSWW
Sbjct: 176 NEIEGKNEETPQNEKPPAYALLGSCQTDGMGLVSWW 211
>gi|401624904|gb|EJS42941.1| rpc25p [Saccharomyces arboricola H-6]
Length = 213
Score = 121 bits (303), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 77/217 (35%), Positives = 112/217 (51%), Gaps = 30/217 (13%)
Query: 1 MFYLSKIEHTLRLPPHLLRLPLNEAIKLELENVFLDKVIANLGLCISIYDIKEIEGGFVY 60
MF LSKI +R+PP AI +L N F +K+I N+GLCI+IYD+ +E G +
Sbjct: 1 MFILSKIADLVRIPPDQFHRDTISAITHQLNNKFANKIIPNVGLCITIYDLLTVEEGQLK 60
Query: 61 PGEGASTHTVKFRLVVFRPFVGEIIAAKLKESDANGLRLSL-GFFEDIYVPSHLLPSPSR 119
PG+G+S V FR VVF+PF+GEI+ + + A G+++SL G F+DI++P ++L
Sbjct: 61 PGDGSSYINVTFRAVVFKPFLGEIVTGWISKCTAEGIKVSLSGIFDDIFIPQNMLFEGCY 120
Query: 120 SEPDPYGRYEVKWIWEFG-DTKYVIDGLDEIKFRVLSVNY----PSIPIEQA-------- 166
P+ E WIW +TK D ++I+FR+ + P P E+
Sbjct: 121 YTPE-----ESAWIWPMDEETKLYFDVNEKIRFRIEREVFVDVKPKSPKERELEERAQLE 175
Query: 167 ---EGSKPFAPMV--------INGSIDYDGLGPVSWW 192
EG P + GS DG+G VSWW
Sbjct: 176 KEIEGKTAETPQTEEKPPAYALLGSCQTDGMGLVSWW 212
>gi|323304205|gb|EGA57981.1| Rpc25p [Saccharomyces cerevisiae FostersB]
Length = 212
Score = 121 bits (303), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 77/216 (35%), Positives = 112/216 (51%), Gaps = 29/216 (13%)
Query: 1 MFYLSKIEHTLRLPPHLLRLPLNEAIKLELENVFLDKVIANLGLCISIYDIKEIEGGFVY 60
MF LSKI +R+PP AI +L N F +K+I N+GLCI+IYD+ +E G +
Sbjct: 1 MFILSKIADLVRIPPDQFHRDTISAITHQLNNKFANKIIPNVGLCITIYDLLTVEEGQLK 60
Query: 61 PGEGASTHTVKFRLVVFRPFVGEIIAAKLKESDANGLRLS-LGFFEDIYVPSHLLPSPSR 119
PG+G+S V FR VVF+PF+GEI+ + + A G+++S LG F+DI++P ++L
Sbjct: 61 PGDGSSFINVTFRAVVFKPFLGEIVTGWISKCTAEGIKVSLLGIFDDIFIPQNMLFEGCY 120
Query: 120 SEPDPYGRYEVKWIWEFG-DTKYVIDGLDEIKFRVLSVNY----PSIPIEQA-------- 166
P+ E WIW +TK D ++I+FR+ + P P E+
Sbjct: 121 YTPE-----ESAWIWPMDEETKLYFDVNEKIRFRIEREVFVDVKPKSPKERELEERAQLE 175
Query: 167 ---EGSKPFAPM-------VINGSIDYDGLGPVSWW 192
EG P + GS DG+G VSWW
Sbjct: 176 NEIEGKNEETPQNEKPPAYALLGSCQTDGMGLVSWW 211
>gi|312382991|gb|EFR28239.1| hypothetical protein AND_04066 [Anopheles darlingi]
Length = 249
Score = 121 bits (303), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 77/224 (34%), Positives = 115/224 (51%), Gaps = 39/224 (17%)
Query: 1 MFYLSKIEHTLRLPPHLLRLPLNEAIKLELENVFLDKVIANLGLCISIYDIKEIEGGFVY 60
MF L++++ +R+ P L RL L EAIK ++ +KV+ N+GLCI++ DI ++ +
Sbjct: 1 MFVLAELKDNVRIAPELFRLKLPEAIKEQINRKLANKVLLNVGLCIALKDIVKLGHSIIL 60
Query: 61 PGEGASTHTVKFRLVVFRPFVGEIIAAKLKESDANGLRLSLGFFEDIYVPSHLLPSPSRS 120
PG+GAS V FR +VFRP VG++I K++ G+ ++LGFF+DI +P L PSR
Sbjct: 61 PGDGASHTEVHFRYIVFRPMVGDVITGKIRSCSREGVHITLGFFDDILIPPSALQHPSR- 119
Query: 121 EPDPYGRYEVKWIWEF----GDTKYV-IDGLDEIKFRV----LSVNYPSIPIEQ------ 165
Y E W+WE+ G+T + +D + IKFRV + P P +Q
Sbjct: 120 ----YEETEQAWVWEYPLEDGNTHDLYMDIGESIKFRVSGEVFEESSPIGPPDQEVPSGS 175
Query: 166 -----------------AEGSKPFAPMVINGSIDYDGLGPVSWW 192
E +K P I +I+ GLG SWW
Sbjct: 176 GGSGAGTGGGPGSTNPAQESNK--TPYRIVAAINESGLGLQSWW 217
>gi|323336829|gb|EGA78092.1| Rpc25p [Saccharomyces cerevisiae Vin13]
Length = 212
Score = 120 bits (302), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 77/216 (35%), Positives = 112/216 (51%), Gaps = 29/216 (13%)
Query: 1 MFYLSKIEHTLRLPPHLLRLPLNEAIKLELENVFLDKVIANLGLCISIYDIKEIEGGFVY 60
MF LSKI +R+PP AI +L N F +K+I N+GLCI+IYD+ +E G +
Sbjct: 1 MFILSKIADLVRIPPDQFHRDTISAITHQLNNKFANKIIPNVGLCITIYDLLTVEEGQLK 60
Query: 61 PGEGASTHTVKFRLVVFRPFVGEIIAAKLKESDANGLRLS-LGFFEDIYVPSHLLPSPSR 119
PG+G+S V FR VVF+PF+GEI+ + + A G+++S LG F+DI++P ++L
Sbjct: 61 PGDGSSYINVTFRAVVFKPFLGEIVTGWISKCTAEGIKVSLLGIFDDIFIPQNMLFEGCY 120
Query: 120 SEPDPYGRYEVKWIWEFG-DTKYVIDGLDEIKFRVLSVNY----PSIPIEQA-------- 166
P+ E WIW +TK D ++I+FR+ + P P E+
Sbjct: 121 YTPE-----ESXWIWPMDEETKLYFDVNEKIRFRIEREVFVDVKPKSPKERELEERAQLE 175
Query: 167 ---EGSKPFAPM-------VINGSIDYDGLGPVSWW 192
EG P + GS DG+G VSWW
Sbjct: 176 NEIEGKNEETPQNEKPPAYALLGSCQTDGMGLVSWW 211
>gi|281340938|gb|EFB16522.1| hypothetical protein PANDA_019485 [Ailuropoda melanoleuca]
Length = 192
Score = 120 bits (302), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 62/162 (38%), Positives = 96/162 (59%), Gaps = 9/162 (5%)
Query: 1 MFYLSKIEHTLRLPPHLLRLPLNEAIKLELENVFLDKVIANLGLCISIYDIKEIEGGFVY 60
MF L ++ T+R+PP LN++I EL +KV+ N+GLCI ++DI ++E +V+
Sbjct: 1 MFVLVEMVDTVRIPPWQFERKLNDSIAEELNKKLANKVMYNVGLCICLFDITKLEDAYVF 60
Query: 61 PGEGASTHTVKFRLVVFRPFVGEIIAAKLKESDANGLRLSLGFFEDIYVPSHLLPSPSRS 120
PG+GAS V FR VVF PF+ EI+ K+K G+ +SLGFF+DI +P L P++
Sbjct: 61 PGDGASHTKVHFRYVVFHPFLDEILIGKIKGCSPEGVHVSLGFFDDILIPPESLQQPAK- 119
Query: 121 EPDPYGRYEVKWIWEF----GDTKYVIDGLDEIKFRVLSVNY 158
+ E W+WE+ G +D +EI+FRV+ ++
Sbjct: 120 ----FDEAEQVWVWEYETEEGAHDLYMDTGEEIRFRVVDESF 157
>gi|308500610|ref|XP_003112490.1| hypothetical protein CRE_30699 [Caenorhabditis remanei]
gi|308267058|gb|EFP11011.1| hypothetical protein CRE_30699 [Caenorhabditis remanei]
Length = 234
Score = 120 bits (302), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 78/215 (36%), Positives = 106/215 (49%), Gaps = 28/215 (13%)
Query: 1 MFYLSKIEHTLRLPPHLLRLPLNEAIKLELENVFLDKVIANLGLCISIYDIKEIEGGFVY 60
MF LS + T+ + PH L IK L +KV+ +LGLCI +YDI EI F+
Sbjct: 1 MFILSLLRDTVSIKPHQLSSDQQMVIKKRLNERLANKVVPDLGLCICVYDISEIGDSFIL 60
Query: 61 PGEGASTHTV----------------KFRLVVFRPFVGEIIAAKLKESDANGLRLSLGFF 104
PGEG V +FR++VFRPFV E+I AK+ S GL LS+ FF
Sbjct: 61 PGEGDCRARVTVFRKMYCFNSKVSDFQFRMIVFRPFVDEVIEAKVIGSSRQGLTLSIEFF 120
Query: 105 EDIYVPSHLLPSPSRSEPDPYGRYEVKWIWEF----GD--TKYVIDGLDEIKFRVLSVNY 158
EDI+VP+ LP P E D G+ W WE+ GD K +D +++R + +
Sbjct: 121 EDIFVPAEKLPEPHVFEED--GQV---WYWEYAQEDGDPPAKLYMDPGKIVRYRTTEIIF 175
Query: 159 PSI-PIEQAEGSKPFAPMVINGSIDYDGLGPVSWW 192
+ P E K M I G++ GLG + WW
Sbjct: 176 KDLKPDLSMEEQKTEKSMEIKGTMASTGLGCIGWW 210
>gi|50550449|ref|XP_502697.1| YALI0D11396p [Yarrowia lipolytica]
gi|49648565|emb|CAG80885.1| YALI0D11396p [Yarrowia lipolytica CLIB122]
Length = 202
Score = 120 bits (302), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 66/206 (32%), Positives = 113/206 (54%), Gaps = 19/206 (9%)
Query: 1 MFYLSKIEHTLRLPPHLLRLPLNEAIKLELENVFLDKVIANLGLCISIYDIKEIEGGFVY 60
MF L++ +RL P + PLN+AI E+ N + +K+I +GLCI +YD+ + G V
Sbjct: 1 MFILTRFTDLIRLDPTSFKKPLNDAIVDEINNCYANKIIDGVGLCICVYDLITVGEGQVM 60
Query: 61 PGEGASTHTVKFRLVVFRPFVGEIIAAKLKESDANGLRLSLGFFEDIYVPSHLLPSPSRS 120
G+GA+ + FR+VVFRPFVGE++ + A G+++ + FF+DI++P+HLL S+
Sbjct: 61 SGDGAAFVKITFRMVVFRPFVGEVLEGWISSCTAEGIKVKMEFFDDIFIPAHLLFENSQ- 119
Query: 121 EPDPYGRYEVKWIWEFGDTKYV-IDGLDEIKFRVLSVNYPSI------------PIEQAE 167
+ E W+W + + + +D ++I+FR+ + + P ++ +
Sbjct: 120 ----FVAREQAWMWCPDEEQELFLDTNEKIRFRIEQEKFQDLPPLKQGYAGSAAPNDEQD 175
Query: 168 GSKP-FAPMVINGSIDYDGLGPVSWW 192
KP P + S +G+G VSWW
Sbjct: 176 PEKPGVPPYSLIASCQGEGMGLVSWW 201
>gi|452819810|gb|EME26862.1| DNA-directed RNA polymerase III subunit C25 isoform 1 [Galdieria
sulphuraria]
Length = 185
Score = 120 bits (302), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 66/192 (34%), Positives = 106/192 (55%), Gaps = 9/192 (4%)
Query: 1 MFYLSKIEHTLRLPPHLLRLPLNEAIKLELENVFLDKVIANLGLCISIYDIKEIEGGFVY 60
MF L+ +E TLR+ P LP +A+ + + ++++ +GLC+ ++D + E +++
Sbjct: 1 MFKLAVLEDTLRISPERFSLPKFDALCYAVHRKYSNRIVPGVGLCVGLWDWLKAEEDYLH 60
Query: 61 PGEGASTHTVKFRLVVFRPFVGEIIAAKLKESDANGLRLSLGFFEDIYVPSHLLPSPSRS 120
PG+G S V FRL+VF P VGE+I +++ S + GL +S+ FF +I++ L
Sbjct: 61 PGDGGSWTKVIFRLLVFEPQVGEVIIGRVEHSSSEGLYVSVDFFNNIFIDRLAL-----Q 115
Query: 121 EPDPYGRYEVKWIWEFGDTKYVIDGLDEIKFRVLSVNYPSIPIEQAEGSKPFAPMVINGS 180
EP + E WIW++ ID ++I+FRV+ V Y + S M + GS
Sbjct: 116 EPSVFDEEEQVWIWKYQGHDLHIDVGEDIRFRVVKVVYEN----SDRSSVSTGAMTVQGS 171
Query: 181 IDYDGLGPVSWW 192
I DGLG VSWW
Sbjct: 172 IAGDGLGLVSWW 183
>gi|254577683|ref|XP_002494828.1| ZYRO0A10582p [Zygosaccharomyces rouxii]
gi|238937717|emb|CAR25895.1| ZYRO0A10582p [Zygosaccharomyces rouxii]
Length = 209
Score = 120 bits (301), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 75/215 (34%), Positives = 111/215 (51%), Gaps = 30/215 (13%)
Query: 1 MFYLSKIEHTLRLPPHLLRLPLNEAIKLELENVFLDKVIANLGLCISIYDIKEIEGGFVY 60
MF LSKI +R+PP +I EL N + +KVI ++GLCI++YDI E++ G +
Sbjct: 1 MFTLSKISELVRIPPDQFHRDTISSITHELNNAYANKVIPHIGLCITVYDILEVDEGQLR 60
Query: 61 PGEGASTHTVKFRLVVFRPFVGEIIAAKLKESDANGLRLS-LGFFEDIYVPSHLLPSPSR 119
PG+GAS V FR +VF+PFVGE+I + + A G+++S LG F DI++P ++L
Sbjct: 61 PGDGASYINVTFRALVFKPFVGEVITGWISKCTAEGIKVSLLGLFNDIFIPQNMLFEGCS 120
Query: 120 SEPDPYGRYEVKWIWEFGDTKYV-IDGLDEIKFRVLSVNY----PSIP------------ 162
PD E WIW ++ + D ++I+FRV + P P
Sbjct: 121 YSPD-----ENAWIWPMDESNQLYFDVNEKIRFRVEQEVFVDVKPKSPKEREHEEQERQQ 175
Query: 163 -----IEQAEGSKPFAPMVINGSIDYDGLGPVSWW 192
+ E P ++ GS DG+G VSWW
Sbjct: 176 AEEAGVAYNETKSPAYALL--GSCQTDGMGVVSWW 208
>gi|256088619|ref|XP_002580426.1| DNA-directed rna polymerase III 25 kD polypeptide [Schistosoma
mansoni]
gi|238666000|emb|CAZ36665.1| DNA-directed rna polymerase III 25 kD polypeptide, putative
[Schistosoma mansoni]
Length = 205
Score = 120 bits (301), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 73/206 (35%), Positives = 113/206 (54%), Gaps = 28/206 (13%)
Query: 10 TLRLPPHLLRLPLNEAIKLELENVFLDKVIANLGLCISIYDIKEIEGGFVYPGEGASTHT 69
T+ + P+ + + E ++ EL + F KVI +GLCIS++DI ++E F+ +GA T
Sbjct: 3 TVVIKPNYICSDMKEIMEQELNSRFCSKVIYKVGLCISLWDILKVEESFISDVDGAYYTT 62
Query: 70 VKFRLVVFRPFVGEIIAAKLKESDANGLRLSLGFFEDIYVPSHLLPSPSRSEPDPYGRYE 129
V FR+V FRPF+ EI+ +K GLR+SL FF+D+++P+ L SPSR Y +
Sbjct: 63 VSFRIVCFRPFIDEILIGIVKSLSKAGLRVSLNFFDDVFIPAEKLRSPSR-----YDYEQ 117
Query: 130 VKWIWEF---GDTKYV-IDGLDEIKFRVL--------------SVNYPSIPIEQAEGS-- 169
WIWE+ G+T + ID D I+FRV+ +++ + P+E + +
Sbjct: 118 NAWIWEYAYEGETAELRIDKHDTIRFRVVEEVWSDPNPDSDKTNISTSNDPLEYGDSNLD 177
Query: 170 ---KPFAPMVINGSIDYDGLGPVSWW 192
+ AP I GS+ DGLG WW
Sbjct: 178 SLIELKAPYTIIGSVVADGLGVTCWW 203
>gi|221055818|ref|XP_002259047.1| RNA polymerase Rpb7 [Plasmodium knowlesi strain H]
gi|193809118|emb|CAQ39820.1| RNA polymerase Rpb7, putative [Plasmodium knowlesi strain H]
Length = 186
Score = 120 bits (301), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 69/192 (35%), Positives = 102/192 (53%), Gaps = 7/192 (3%)
Query: 1 MFYLSKIEHTLRLPPHLLRLPLNEAIKLELENVFLDKVIANLGLCISIYDIKEIEGGFVY 60
MF L +IE +++ PH + L I+ + ++DKV+ N+GLC+ +YDI E++ +
Sbjct: 1 MFSLFRIEDVIKIEPHFMEEELKNVIEFLIRAKYVDKVLQNVGLCVGLYDILEVKNREIL 60
Query: 61 PGEGASTHTVKFRLVVFRPFVGEIIAAKLKESDANGLRLSLGFFEDIYVPSHLLPSPSRS 120
G G V FRLV F+PF EII +K SD+NG+ +S+GFFE+I V L
Sbjct: 61 KGTGEIRFDVIFRLVYFQPFENEIIEGFVKNSDSNGIIISIGFFENIRVNCANL-----K 115
Query: 121 EPDPYGRYEVKWIWEFGDTKYVIDGLDEIKFRVLSVNYPSIPIEQAEGSKPFAPMVINGS 180
EP + + +W W + K+ + I+ RVL Y S P E + M I G+
Sbjct: 116 EPKEFDMEKKEWFWMYEGIKFFYTKDELIRVRVLDT-YFSDPNEMRKDETT-PSMSITGT 173
Query: 181 IDYDGLGPVSWW 192
+ DGLG V WW
Sbjct: 174 VQQDGLGLVKWW 185
>gi|259147697|emb|CAY80947.1| Rpc25p [Saccharomyces cerevisiae EC1118]
Length = 212
Score = 120 bits (301), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 77/216 (35%), Positives = 112/216 (51%), Gaps = 29/216 (13%)
Query: 1 MFYLSKIEHTLRLPPHLLRLPLNEAIKLELENVFLDKVIANLGLCISIYDIKEIEGGFVY 60
MF LSKI +R+PP AI +L N F +K+I N+GLCI+IYD+ +E G +
Sbjct: 1 MFILSKIADLVRIPPDQFHRDTISAITHQLNNKFANKIIPNVGLCITIYDLLTVEEGQLK 60
Query: 61 PGEGASTHTVKFRLVVFRPFVGEIIAAKLKESDANGLRLS-LGFFEDIYVPSHLLPSPSR 119
PG+G+S V FR VVF+PF+GEI+ + + A G+++S LG F+DI++P ++L
Sbjct: 61 PGDGSSYINVTFRAVVFKPFLGEIVTGWISKCTAEGIKVSLLGIFDDIFIPQNMLFEGCY 120
Query: 120 SEPDPYGRYEVKWIWEFG-DTKYVIDGLDEIKFRVLSVNY----PSIPIEQA-------- 166
P+ E WIW +TK D ++I+FR+ + P P E+
Sbjct: 121 YTPE-----ESVWIWPMDEETKLYFDVNEKIRFRIEREVFVDVKPKSPKERELEERAQLE 175
Query: 167 ---EGSKPFAPM-------VINGSIDYDGLGPVSWW 192
EG P + GS DG+G VSWW
Sbjct: 176 NEIEGKNEETPQNEKPPAYALLGSCQTDGMGLVSWW 211
>gi|289742667|gb|ADD20081.1| DNA-directed RNA polymerase subunit E' [Glossina morsitans
morsitans]
Length = 246
Score = 120 bits (300), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 72/217 (33%), Positives = 110/217 (50%), Gaps = 30/217 (13%)
Query: 1 MFYLSKIEHTLRLPPHLLRLPLNEAIKLELENVFLDKVIANLGLCISIYDIKEIEGGFVY 60
MF L++++ T+R+ P L L EA++ E+ +KV+ N+GLCI++ D+ ++ F+
Sbjct: 1 MFVLAELKDTVRISPDQFNLKLLEAVRDEINRKLANKVLLNVGLCIALKDVVSLKDSFIL 60
Query: 61 PGEGASTHTVKFRLVVFRPFVGEIIAAKLKESDANGLRLSLGFFEDIYVPSHLLPSPSRS 120
PG+GAS V FR +VFRP VG ++ K++ G+ ++LGFF+DI +P L PSR
Sbjct: 61 PGDGASHTEVVFRYIVFRPPVGNVLTGKIRSCSHEGVHVTLGFFDDILIPPTALQHPSR- 119
Query: 121 EPDPYGRYEVKWIWEF-----GDTKYVIDGLDEIKFRVLS------------VNYPSIPI 163
+ E W+WE+ G +D + IKFRV N P
Sbjct: 120 ----FDETERAWVWEYPLDDGGKHDLFMDIGEPIKFRVSREIFEESSPIGPPKNEALQPG 175
Query: 164 EQAEGSKPFA--------PMVINGSIDYDGLGPVSWW 192
A+G A P I +I+ GLG +SWW
Sbjct: 176 TSAQGCTSTAQQSNEARTPYKIIAAINESGLGVLSWW 212
>gi|390596833|gb|EIN06234.1| hypothetical protein PUNSTDRAFT_106452 [Punctularia strigosozonata
HHB-11173 SS5]
Length = 226
Score = 120 bits (300), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 74/218 (33%), Positives = 112/218 (51%), Gaps = 29/218 (13%)
Query: 1 MFYLSKIEHTLRLPPHLLRLPLNEAIKLELENVFLDKVIANLGLCISIYDIKEIEGGFVY 60
MF LS I+ T+ + P P+ +A+ EL + ++V+ ++GLC+ ++DI E G V
Sbjct: 1 MFQLSFIKDTVAIHPSSFGTPVEQALIAELNKKYANRVLHDVGLCVCVFDISEAGEGKVR 60
Query: 61 PGEGASTHTVKFRLVVFRPFVGEIIAAKLKESDANGLRLSLGFFEDIYVPSHLLPSPSRS 120
G+G + V FRLVVFRPF E+I AK+K SD +G+R+S+GFF+DIY+P LP PS
Sbjct: 61 YGDGMLWYKVVFRLVVFRPFASEVILAKVKSSDEDGIRVSVGFFDDIYIPVMYLPQPSAF 120
Query: 121 EPDPYGRYEVKWIWEFG------------------DTKYVIDGLDEIKFRVLSVNY---- 158
+P+ + W+ ++ ID + I+ RV + ++
Sbjct: 121 DPNERAHF---WLPPDPDEPDAPPPTAHSLLDSPVSSRMYIDKGEVIRVRVEADDFFDDE 177
Query: 159 --PSIPIE--QAEGSKPFAPMVINGSIDYDGLGPVSWW 192
P E QA + P + SI GLGPV WW
Sbjct: 178 PGPPKATEGVQAVRQRARPPYTVTCSIAEQGLGPVVWW 215
>gi|389583597|dbj|GAB66331.1| RNA polymerase Rpb7 N-terminal domain containing protein, partial
[Plasmodium cynomolgi strain B]
Length = 186
Score = 120 bits (300), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 69/192 (35%), Positives = 101/192 (52%), Gaps = 7/192 (3%)
Query: 1 MFYLSKIEHTLRLPPHLLRLPLNEAIKLELENVFLDKVIANLGLCISIYDIKEIEGGFVY 60
MF L +IE +++ PH + L I+ + ++DKV+ N+GLC+ +YDI E++ +
Sbjct: 1 MFSLFRIEDVIKIEPHFMEEELKTVIEFLIRAKYVDKVLQNVGLCVGLYDILEVKNREIL 60
Query: 61 PGEGASTHTVKFRLVVFRPFVGEIIAAKLKESDANGLRLSLGFFEDIYVPSHLLPSPSRS 120
G G V FRLV F PF EII +K SD+NG+ +S+GFFE+I V L
Sbjct: 61 KGTGEIRFDVIFRLVYFHPFENEIIEGFVKNSDSNGIIISIGFFENIRVNCANL-----R 115
Query: 121 EPDPYGRYEVKWIWEFGDTKYVIDGLDEIKFRVLSVNYPSIPIEQAEGSKPFAPMVINGS 180
EP + + +W W + K+ + I+ RVL Y S P E + M I G+
Sbjct: 116 EPKEFDMEKKEWFWTYEGIKFFYTKDELIRVRVLDT-YFSDPNEMRKDETT-PSMSITGT 173
Query: 181 IDYDGLGPVSWW 192
+ DGLG V WW
Sbjct: 174 VQQDGLGLVKWW 185
>gi|242004630|ref|XP_002423183.1| DNA-directed RNA polymerase III subunit 22.9 kDa polypeptide,
putative [Pediculus humanus corporis]
gi|212506148|gb|EEB10445.1| DNA-directed RNA polymerase III subunit 22.9 kDa polypeptide,
putative [Pediculus humanus corporis]
Length = 200
Score = 119 bits (299), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 71/202 (35%), Positives = 111/202 (54%), Gaps = 15/202 (7%)
Query: 1 MFYLSKIEHTLRLPPHLLRLPLNEAIKLELENVFLDKVIANLGLCISIYDIKEIEGGFVY 60
MF L++I+ +R+ P PL +AI E+ +KV+ N+GL I+++DI E+ +
Sbjct: 1 MFVLAEIKDYIRISPCNFHKPLKDAISEEINKKLANKVVMNVGLSIALWDISELGDSHII 60
Query: 61 PGEGASTHTVKFRLVVFRPFVGEIIAAKLKESDANGLRLSLGFFEDIYVPSHLLPSPSRS 120
PG+G V FR VVFRPF+ EI+ K+K G+ ++LGFF+DI +PS L PSR
Sbjct: 61 PGDGCFHTRVCFRYVVFRPFLTEILVGKVKSCSQEGVVVTLGFFDDIIIPSSALQHPSR- 119
Query: 121 EPDPYGRYEVKWIWEF--GDTKY--VIDGLDEIKFRVLSVNY----PSIPIEQAEGS--K 170
+ E W+WE+ + K+ +D + I+FRV + + P P ++G +
Sbjct: 120 ----FDEAEQVWVWEYQVDEEKHDLFMDIGEPIRFRVTAETFEETSPVGPENSSDGDSVE 175
Query: 171 PFAPMVINGSIDYDGLGPVSWW 192
P + SI+ GLG +SWW
Sbjct: 176 TKVPYSLTASINEPGLGLMSWW 197
>gi|383853112|ref|XP_003702068.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC8-like
isoform 2 [Megachile rotundata]
Length = 183
Score = 119 bits (298), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 74/207 (35%), Positives = 115/207 (55%), Gaps = 42/207 (20%)
Query: 1 MFYLSKIEHTLRLPPHLLRLPLNEAIKLELENVFLDKVIANLGLCISIYDIKEIEGGFVY 60
MF L++++ T+R+PP + LN+A+ EL +KV N+GLCI+++DI +IE +++
Sbjct: 1 MFVLAELKDTVRIPPWEFKRKLNDAVTDELNRKLANKVYLNVGLCIALHDITKIEESYIF 60
Query: 61 PGEGASTHTVKFRLVVFRPFVGEIIAAKLKESDANGLRLSLGFFEDIYVPSHLLPSPSRS 120
PG+GAS V FR +VF L+LGFFEDI +P H L PSR
Sbjct: 61 PGDGASHTKVIFRFIVF---------------------LTLGFFEDIVIPPHKLQHPSR- 98
Query: 121 EPDPYGRYEVKWIWEF--GDTK---YVIDGLDEIKFRVLSVNY----PSIP------IEQ 165
+ + E W+WE+ GD + +D + I+FRV+S + P+ P +E+
Sbjct: 99 ----FDQMEQAWVWEYDTGDGEKHDLFMDAGEIIRFRVVSETFTEALPTGPNMSGENVEK 154
Query: 166 AEGSKPFAPMVINGSIDYDGLGPVSWW 192
+E SK +P + G+ID GLG ++WW
Sbjct: 155 SE-SKNTSPYTLGGAIDEPGLGLLTWW 180
>gi|170043715|ref|XP_001849521.1| DNA-directed RNA polymerase III 25 kDa polypeptide [Culex
quinquefasciatus]
gi|167867047|gb|EDS30430.1| DNA-directed RNA polymerase III 25 kDa polypeptide [Culex
quinquefasciatus]
Length = 239
Score = 119 bits (298), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 75/216 (34%), Positives = 111/216 (51%), Gaps = 29/216 (13%)
Query: 1 MFYLSKIEHTLRLPPHLLRLPLNEAIKLELENVFLDKVIANLGLCISIYDIKEIEGGFVY 60
MF L++++ T+R+ P L L L EAIK E+ +KV+ N+GLCI++ DI ++ +
Sbjct: 1 MFVLAELKDTVRIAPELFNLKLPEAIKDEVNRKLANKVLLNVGLCIALKDIVKLGDSIIL 60
Query: 61 PGEGASTHTVKFRLVVFRPFVGEIIAAKLKESDANGLRLSLGFFEDIYVPSHLLPSPSRS 120
PG+GAS V FR +VFRP +G++I K++ G+ ++LGFF+DI +P L PSR
Sbjct: 61 PGDGASHTEVNFRYIVFRPMIGDVITGKIRSCSREGVHVTLGFFDDILIPPSALQHPSRF 120
Query: 121 EPDPYGRYEVKWIWEF--GDTK---YVIDGLDEIKFR----VLSVNYPSIPIEQ------ 165
E E W+WE+ D K +D + IKFR V + P P +Q
Sbjct: 121 E-----EAEQAWVWEYPLEDGKKHDLYMDIGESIKFRVSGEVFEESSPIGPPDQEVAGSG 175
Query: 166 ---------AEGSKPFAPMVINGSIDYDGLGPVSWW 192
P I +I+ GLG +SWW
Sbjct: 176 TASSTSTSATTADANKTPYRIMAAINESGLGLLSWW 211
>gi|359487930|ref|XP_003633678.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed RNA polymerase III
subunit RPC8-like [Vitis vinifera]
Length = 101
Score = 119 bits (297), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 70/98 (71%), Positives = 84/98 (85%)
Query: 1 MFYLSKIEHTLRLPPHLLRLPLNEAIKLELENVFLDKVIANLGLCISIYDIKEIEGGFVY 60
MF+LS IEHTLRL PHLL LPL+EAIK ELE++FLDKV+ANLGLC + DI+ I+GGF +
Sbjct: 1 MFFLSLIEHTLRLSPHLLXLPLSEAIKGELESLFLDKVVANLGLCSFVNDIRSIDGGFFF 60
Query: 61 PGEGASTHTVKFRLVVFRPFVGEIIAAKLKESDANGLR 98
PG+ AST+TV+FRLV+F FV +II AKLKESDANGLR
Sbjct: 61 PGDSASTYTVEFRLVMFGLFVEDIITAKLKESDANGLR 98
>gi|255718171|ref|XP_002555366.1| KLTH0G07546p [Lachancea thermotolerans]
gi|238936750|emb|CAR24929.1| KLTH0G07546p [Lachancea thermotolerans CBS 6340]
Length = 208
Score = 119 bits (297), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 79/213 (37%), Positives = 113/213 (53%), Gaps = 27/213 (12%)
Query: 1 MFYLSKIEHTLRLPPHLLRLPLNEAIKLELENVFLDKVIANLGLCISIYDIKEIEGGFVY 60
MF LSKI +R+PP AI +L N + +KVI +LGLCI+IYD+ E+ G +
Sbjct: 1 MFILSKISDLVRVPPDQFHRHTKAAIFHQLNNKYANKVIPHLGLCITIYDLLEVREGQLK 60
Query: 61 PGEGASTHTVKFRLVVFRPFVGEIIAAKLKESDANGLRLS-LGFFEDIYVPSHLLPSPSR 119
PG+GA+ FR +VF+PFVGEII + + A G+++S LG F+DI++P +L
Sbjct: 61 PGDGAAYINTTFRALVFKPFVGEIITGWISQCTAEGIKVSLLGVFDDIFIPQKMLFEGCY 120
Query: 120 SEPDPYGRYEVKWIWEFG-DTKYVIDGLDEIKFRVLSVNY----PSIP--------IEQA 166
PD + W+W +TK D ++I+FRV + P P +EQ
Sbjct: 121 FSPD-----DNAWVWPMDEETKLYFDVNEKIRFRVEQEVFVDVKPKSPKEREAEEQMEQN 175
Query: 167 EGS-------KPFAPMVINGSIDYDGLGPVSWW 192
E S KP A ++ GS DG+G V WW
Sbjct: 176 EDSEEKPKIEKPPAYALL-GSCQTDGMGLVGWW 207
>gi|47206295|emb|CAF93183.1| unnamed protein product [Tetraodon nigroviridis]
Length = 251
Score = 119 bits (297), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 60/157 (38%), Positives = 93/157 (59%), Gaps = 7/157 (4%)
Query: 1 MFYLSKIEHTLRLPPHLLRLPLNEAIKLELENVFLDKVIANLGLCISIYDIKEIEGGFVY 60
MF L ++ T+R+ P + +NEA+ EL +KV+ N+GLCI +YDI ++E +++
Sbjct: 1 MFVLVEMVDTVRISPWDFQRQINEAVAEELNKKLANKVVYNVGLCICLYDITKLEDSYIF 60
Query: 61 PGEGASTHTVKFRLVVFRPFVGEIIAAKLKESDANGLRLSLGFFEDIYVPSHLLPSPSRS 120
PG+GAS V FR VVF PF+ EI+ K+K G+ +++GFF+DI +P L P++
Sbjct: 61 PGDGASHTKVHFRYVVFHPFLEEILIGKIKYCSQEGVHVTMGFFDDILIPPESLQQPAKF 120
Query: 121 EPDPYGRYEVKWIWEF----GDTKYVIDGLDEIKFRV 153
D E W+WE+ G +D +EI+FRV
Sbjct: 121 RSD---EAEQVWVWEYETDEGAHDLYMDQGEEIRFRV 154
>gi|195174185|ref|XP_002027860.1| GL16275 [Drosophila persimilis]
gi|194115536|gb|EDW37579.1| GL16275 [Drosophila persimilis]
Length = 240
Score = 119 bits (297), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 69/216 (31%), Positives = 110/216 (50%), Gaps = 29/216 (13%)
Query: 1 MFYLSKIEHTLRLPPHLLRLPLNEAIKLELENVFLDKVIANLGLCISIYDIKEIEGGFVY 60
MF L++++ T+R+ P + L +AI+ E++ +KV+ N+GLCI++ DI ++ +
Sbjct: 1 MFVLAELKDTVRIAPDQFSVKLVDAIRDEIDRKLANKVLLNVGLCIALKDIVSLQDSIIL 60
Query: 61 PGEGASTHTVKFRLVVFRPFVGEIIAAKLKESDANGLRLSLGFFEDIYVPSHLLPSPSRS 120
PG+GAS V FR +VFRP VG ++ K++ G+ ++LGFF+DI +P L PSR
Sbjct: 61 PGDGASHTAVVFRYIVFRPKVGTVMTGKIRSCSREGVHVTLGFFDDILIPQAALQHPSR- 119
Query: 121 EPDPYGRYEVKWIWEF-----GDTKYVIDGLDEIKFRVLS--------VNYPSIPIEQAE 167
+ E W+WE+ +D + IKFRV V P + +
Sbjct: 120 ----FDEAEQAWVWEYPLEDGAKHDLFMDVGEPIKFRVSREIFEETSPVGPPKTESQSTQ 175
Query: 168 G-----------SKPFAPMVINGSIDYDGLGPVSWW 192
G + P I G+I+ GLG +SWW
Sbjct: 176 GPSTSTAAATAAQEIKTPYKIIGAINESGLGVLSWW 211
>gi|302686598|ref|XP_003032979.1| hypothetical protein SCHCODRAFT_54037 [Schizophyllum commune H4-8]
gi|300106673|gb|EFI98076.1| hypothetical protein SCHCODRAFT_54037 [Schizophyllum commune H4-8]
Length = 228
Score = 119 bits (297), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 74/217 (34%), Positives = 112/217 (51%), Gaps = 27/217 (12%)
Query: 1 MFYLSKIEHTLRLPPHLLRLPLNEAIKLELENVFLDKVIANLGLCISIYDIKEIEGGFVY 60
MF LS I+ T+ + P +P EAI EL + ++V+ N+GL I ++D+ + G V
Sbjct: 1 MFQLSIIKDTVPIHPSDFGVPAQEAIITELNKKYANRVLHNVGLGICVFDLSQASEGKVR 60
Query: 61 PGEGASTHTVKFRLVVFRPFVGEIIAAKLKESDANGLRLSLGFFEDIYVPSHLLPSPSRS 120
G+G + V FRLVVFRPF E++ K+K SD +G+R+SL FF+D+Y+P+ LP PS
Sbjct: 61 YGDGMLWYKVVFRLVVFRPFTSEVVLGKVKSSDEDGIRVSLNFFDDVYIPAMYLPQPSAF 120
Query: 121 EPDPYGRY---------EVKWIWEF-GDTKYVIDGLDEIKFRVLS--------------- 155
+P+ + V + + DT+ ID + I+ RV +
Sbjct: 121 DPNERAHFWLPNPPENPSVHVLLDTPTDTRMYIDAGEVIRMRVEADEFYDDEPGPVQKPE 180
Query: 156 VNYPSIPIEQAEGSKPFAPMVINGSIDYDGLGPVSWW 192
+N P +E +P P I SI GLGP +WW
Sbjct: 181 INGPVKAAPTSENKRP--PYTIICSIGEQGLGPTAWW 215
>gi|367042650|ref|XP_003651705.1| hypothetical protein THITE_2112289 [Thielavia terrestris NRRL 8126]
gi|346998967|gb|AEO65369.1| hypothetical protein THITE_2112289 [Thielavia terrestris NRRL 8126]
Length = 199
Score = 119 bits (297), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 70/203 (34%), Positives = 110/203 (54%), Gaps = 16/203 (7%)
Query: 1 MFYLSKIEHTLRLPPHLLRLPLNEAIKLELENVFLDKVIANLGLCISIYDIKEIEGGFVY 60
MF L+KI +++ PH R AI+ + + + +KV+ +GLCI ++DI G +
Sbjct: 1 MFILTKIADLVQIAPHDFRKQSYVAIEDNINSKYANKVVQKIGLCICLWDILWTSEGLIG 60
Query: 61 PGEGASTHTVKFRLVVFRPFVGEIIAAKLKESDANGLRLSLGFFEDIYVPSHLLPSPSRS 120
G+G V+FR+VVFRPF GE+I A++ + + G+ L+ FF++I+VP LP S
Sbjct: 61 QGDGMVNVNVEFRMVVFRPFKGEVIVARITDQSSEGIYLATDFFDNIFVPWTELPEGSEF 120
Query: 121 EPDPYGRYEVKWIWEFGDTKYVIDGLDEIKFRVLSVNY----PSIPIEQAEGS--KPFA- 173
EP+ E W+W+ D D + ++ +V+S + P PIE EG+ +P A
Sbjct: 121 EPN-----ENLWVWKEEDQVMYFDNNEMVRVKVISEEWHDQTPLKPIETEEGAEEQPAAV 175
Query: 174 ----PMVINGSIDYDGLGPVSWW 192
P I GS++ GLG WW
Sbjct: 176 NSKPPYKITGSMNGPGLGCCLWW 198
>gi|443898780|dbj|GAC76114.1| DNA-directed RNA polymerase subunit E' [Pseudozyma antarctica T-34]
Length = 326
Score = 119 bits (297), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 72/227 (31%), Positives = 111/227 (48%), Gaps = 42/227 (18%)
Query: 1 MFYLSKIEHTLRLPPHLLRLPLNEAIKLELENVFLDKVIANLGLCISIYDIKEIEGGFVY 60
MF L+ IE T+ + P P +I ++ + +K++ ++GLC+S++DI G V
Sbjct: 85 MFVLADIEDTISVHPSAFGQPSLTSISDQINIKYANKILPDVGLCVSLFDILSCSEGKVR 144
Query: 61 PGEGASTHTVKFRLVVFRPFVGEIIAAKLKESDANGLRLSLGFFEDIYVPSHLLPSPSRS 120
G+G H V FRLVVFRPF E++ K+K SD G+R+++GFF+DIYVP+HL+P P
Sbjct: 145 FGDGCLYHHVTFRLVVFRPFTQEVLTGKIKSSDEAGIRITMGFFDDIYVPAHLIPKPC-- 202
Query: 121 EPDPYGRYEVKWIWEFG---------------DTKYVIDGLDEIKFRVLS---------- 155
+ E W W + D + +D ++++F + S
Sbjct: 203 ---AFDHQERAWFWLYEARTDEIAADPLLSHPDERMYLDTAEQVRFTIESDEFWDAEPGP 259
Query: 156 VNYPSIPIEQ----------AEGSKPFAPMVINGSIDYDGLGPVSWW 192
+ P+ Q A+ +KP I SI GLG VSWW
Sbjct: 260 IANPTTDSAQSSALHHNQHTAKETKPH--YSITASIAGSGLGLVSWW 304
>gi|213406069|ref|XP_002173806.1| RNA polymerase III subunit Rpc25 [Schizosaccharomyces japonicus
yFS275]
gi|212001853|gb|EEB07513.1| RNA polymerase III subunit Rpc25 [Schizosaccharomyces japonicus
yFS275]
Length = 205
Score = 118 bits (296), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 71/209 (33%), Positives = 109/209 (52%), Gaps = 22/209 (10%)
Query: 1 MFYLSKIEHTLRLPPHLLRLPLNEAIKLELENVFLDKVIANLGLCISIYDIKEIEGGFVY 60
MF LS I +++ P P EA+ E+ + +KVI +GL I+I+D I G +
Sbjct: 1 MFVLSVISDVVKIHPSDFWKPTKEALSDEINKKYANKVIQQVGLAIAIFDFLTIGEGIIK 60
Query: 61 PGEGASTHTVKFRLVVFRPFVGEIIAAKLKESDANGLRLSLGFFEDIYVPSHLLPSPSRS 120
G+G S VKFRL+VFRPF GE++ ++K G+R++LGFF+DI+VP +LP PS
Sbjct: 61 FGDGCSYMNVKFRLLVFRPFRGEVMLGRIKSCTELGIRVTLGFFDDIFVPKEMLPDPS-- 118
Query: 121 EPDPYGRYEVKWIWEFGD-------TKYVIDGLDEIKFRVLSVNY----PSIPIEQAEG- 168
Y E W+W ++ +D +EI+F++ S ++ PS P +
Sbjct: 119 ---VYNAQERAWVWRVPSEETDGEPSELFMDVGEEIRFQIESEHFIDISPSRPSANSAAA 175
Query: 169 -----SKPFAPMVINGSIDYDGLGPVSWW 192
++ AP + S DGLG +WW
Sbjct: 176 TTDVRTEAEAPYSLVASCSKDGLGIPAWW 204
>gi|24662815|ref|NP_648490.1| CG7339, isoform A [Drosophila melanogaster]
gi|442631740|ref|NP_001261720.1| CG7339, isoform B [Drosophila melanogaster]
gi|7294695|gb|AAF50032.1| CG7339, isoform A [Drosophila melanogaster]
gi|21428376|gb|AAM49848.1| GM16372p [Drosophila melanogaster]
gi|220949964|gb|ACL87525.1| CG7339-PA [synthetic construct]
gi|220959072|gb|ACL92079.1| CG7339-PA [synthetic construct]
gi|440215643|gb|AGB94414.1| CG7339, isoform B [Drosophila melanogaster]
Length = 240
Score = 118 bits (296), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 69/217 (31%), Positives = 109/217 (50%), Gaps = 30/217 (13%)
Query: 1 MFYLSKIEHTLRLPPHLLRLPLNEAIKLELENVFLDKVIANLGLCISIYDIKEIEGGFVY 60
MF L++++ +R+ P L L +A++ E++ +KV+ N+GLCI++ DI ++ +
Sbjct: 1 MFVLAELKDNVRIAPDQFHLKLVDAVRDEIDRKLANKVLLNVGLCIALKDIVSLKDSIIL 60
Query: 61 PGEGASTHTVKFRLVVFRPFVGEIIAAKLKESDANGLRLSLGFFEDIYVPSHLLPSPSRS 120
PG+GAS V FR VVFRP VG +I K++ G+ ++LGFF+DI +P L PSR
Sbjct: 61 PGDGASHTEVLFRYVVFRPMVGTVITGKIRNCSREGVHVTLGFFDDILIPHAALQHPSR- 119
Query: 121 EPDPYGRYEVKWIWEF-----GDTKYVIDGLDEIKFRVLS--------VNYPSIPIEQAE 167
+ E W+WE+ +D + IKFRV + P + +
Sbjct: 120 ----FDEAEQAWVWEYPLEDGAKHDLFMDVGEPIKFRVSREIFEETSPIGPPKTEAQTQQ 175
Query: 168 G------------SKPFAPMVINGSIDYDGLGPVSWW 192
G + P I G+I+ GLG +SWW
Sbjct: 176 GASTSAAVASATSQEVKTPYRIIGAINESGLGVLSWW 212
>gi|195493530|ref|XP_002094458.1| GE21834 [Drosophila yakuba]
gi|194180559|gb|EDW94170.1| GE21834 [Drosophila yakuba]
Length = 240
Score = 118 bits (296), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 69/217 (31%), Positives = 109/217 (50%), Gaps = 30/217 (13%)
Query: 1 MFYLSKIEHTLRLPPHLLRLPLNEAIKLELENVFLDKVIANLGLCISIYDIKEIEGGFVY 60
MF L++++ +R+ P L L +A++ E++ +KV+ N+GLCI++ DI ++ +
Sbjct: 1 MFVLAELKDNVRIAPDQFHLKLVDAVRDEIDRKLANKVLLNVGLCIALKDIVSLKDSIIL 60
Query: 61 PGEGASTHTVKFRLVVFRPFVGEIIAAKLKESDANGLRLSLGFFEDIYVPSHLLPSPSRS 120
PG+GAS V FR VVFRP VG +I K++ G+ ++LGFF+DI +P L PSR
Sbjct: 61 PGDGASHTEVLFRYVVFRPMVGTVITGKIRNCSREGVHVTLGFFDDILIPHAALQHPSR- 119
Query: 121 EPDPYGRYEVKWIWEF-----GDTKYVIDGLDEIKFRVLS--------VNYPSIPIEQAE 167
+ E W+WE+ +D + IKFRV + P + +
Sbjct: 120 ----FDEAEQAWVWEYPLEDGAKHDLFMDVGEPIKFRVSREIFEETSPIGPPKAEAQTQQ 175
Query: 168 G------------SKPFAPMVINGSIDYDGLGPVSWW 192
G + P I G+I+ GLG +SWW
Sbjct: 176 GASSSSAVASATSQEVKTPYRIIGAINESGLGVLSWW 212
>gi|194869246|ref|XP_001972417.1| GG15519 [Drosophila erecta]
gi|190654200|gb|EDV51443.1| GG15519 [Drosophila erecta]
Length = 240
Score = 118 bits (296), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 69/217 (31%), Positives = 109/217 (50%), Gaps = 30/217 (13%)
Query: 1 MFYLSKIEHTLRLPPHLLRLPLNEAIKLELENVFLDKVIANLGLCISIYDIKEIEGGFVY 60
MF L++++ +R+ P L L +A++ E++ +KV+ N+GLCI++ DI ++ +
Sbjct: 1 MFVLAELKDNVRIAPDQFHLKLVDAVRDEIDRKLANKVLLNVGLCIALKDIVSLKDSIIL 60
Query: 61 PGEGASTHTVKFRLVVFRPFVGEIIAAKLKESDANGLRLSLGFFEDIYVPSHLLPSPSRS 120
PG+GAS V FR VVFRP VG +I K++ G+ ++LGFF+DI +P L PSR
Sbjct: 61 PGDGASHTEVLFRYVVFRPMVGTVITGKIRNCSREGVHVTLGFFDDILIPHAALQHPSR- 119
Query: 121 EPDPYGRYEVKWIWEF-----GDTKYVIDGLDEIKFRVLS--------VNYPSIPIEQAE 167
+ E W+WE+ +D + IKFRV + P + +
Sbjct: 120 ----FDEAEQAWVWEYPLEDGAKHDLFMDVGEPIKFRVSREIFEETSPIGPPKAEAQTQQ 175
Query: 168 G------------SKPFAPMVINGSIDYDGLGPVSWW 192
G + P I G+I+ GLG +SWW
Sbjct: 176 GASASSAVASATSQEVKTPYRIIGAINESGLGVLSWW 212
>gi|320580456|gb|EFW94678.1| RNA polymerase III subunit C25 [Ogataea parapolymorpha DL-1]
Length = 206
Score = 118 bits (295), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 65/210 (30%), Positives = 110/210 (52%), Gaps = 23/210 (10%)
Query: 1 MFYLSKIEHTLRLPPHLLRLPLNEAIKLELENVFLDKVIANLGLCISIYDIKEIEGGFVY 60
MF LS I +R+ PHL LP EA++ EL + +KVI LGL ++++D+ +++ G +
Sbjct: 1 MFQLSVISDLIRISPHLFHLPTEEAVQNELNIKYANKVIHKLGLVVAVWDLLQVDDGLLK 60
Query: 61 PGEGASTHTVKFRLVVFRPFVGEIIAAKLKESDANGLRLSLGFFEDIYVPSHLLPSPSRS 120
PG+GA V+FR+VVF+P VGE++ ++ G+++++ FF DI++P + + S
Sbjct: 61 PGDGAVFINVRFRIVVFKPVVGEVLTGWIESCSDEGIKVNMNFFNDIFIPKNYMFEGSY- 119
Query: 121 EPDPYGRYEVKWIWEFG-DTKYVIDGLDEIKFRVLSVNYPSI-------------PIEQA 166
Y + WIW+ +TK +D ++I FR+ + + +Q
Sbjct: 120 ----YSADDNAWIWQMDEETKLYLDINEKINFRIEKEVFNDVRPKGPDNSLTSLTADDQT 175
Query: 167 EG----SKPFAPMVINGSIDYDGLGPVSWW 192
G + P + S DG+G VSWW
Sbjct: 176 NGVDTEDRKVPPYALIASCQTDGMGCVSWW 205
>gi|125979739|ref|XP_001353902.1| GA20275 [Drosophila pseudoobscura pseudoobscura]
gi|54640887|gb|EAL29638.1| GA20275 [Drosophila pseudoobscura pseudoobscura]
Length = 240
Score = 118 bits (295), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 69/216 (31%), Positives = 110/216 (50%), Gaps = 29/216 (13%)
Query: 1 MFYLSKIEHTLRLPPHLLRLPLNEAIKLELENVFLDKVIANLGLCISIYDIKEIEGGFVY 60
MF L++++ T+R+ P + L +AI+ E++ +KV+ N+GLCI++ DI ++ +
Sbjct: 1 MFVLAELKDTVRIAPDQFSVKLVDAIRDEIDRKLANKVLLNVGLCIALKDIVSLQDSIIL 60
Query: 61 PGEGASTHTVKFRLVVFRPFVGEIIAAKLKESDANGLRLSLGFFEDIYVPSHLLPSPSRS 120
PG+GAS V FR +VFRP VG ++ K++ G+ ++LGFF+DI +P L PSR
Sbjct: 61 PGDGASHTAVVFRYIVFRPKVGTVVTGKIRSCSREGVHVTLGFFDDILIPHAALQHPSR- 119
Query: 121 EPDPYGRYEVKWIWEF-----GDTKYVIDGLDEIKFRVLS--------VNYPSIPIEQAE 167
+ E W+WE+ +D + IKFRV V P + +
Sbjct: 120 ----FDEAEQAWVWEYPLEDGAKHDLFMDVGEPIKFRVSREIFEETSPVGPPKSESQSTQ 175
Query: 168 G-----------SKPFAPMVINGSIDYDGLGPVSWW 192
G + P I G+I+ GLG +SWW
Sbjct: 176 GPSTSTAAATAAQEIKTPYKIIGAINESGLGVLSWW 211
>gi|195326872|ref|XP_002030149.1| GM25288 [Drosophila sechellia]
gi|195589569|ref|XP_002084524.1| GD14319 [Drosophila simulans]
gi|194119092|gb|EDW41135.1| GM25288 [Drosophila sechellia]
gi|194196533|gb|EDX10109.1| GD14319 [Drosophila simulans]
Length = 240
Score = 118 bits (295), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 69/217 (31%), Positives = 109/217 (50%), Gaps = 30/217 (13%)
Query: 1 MFYLSKIEHTLRLPPHLLRLPLNEAIKLELENVFLDKVIANLGLCISIYDIKEIEGGFVY 60
MF L++++ +R+ P L L +A++ E++ +KV+ N+GLCI++ DI ++ +
Sbjct: 1 MFVLAELKDNVRIAPDQFNLKLVDAVRDEIDRKLANKVLLNVGLCIALKDIVSLKDSIIL 60
Query: 61 PGEGASTHTVKFRLVVFRPFVGEIIAAKLKESDANGLRLSLGFFEDIYVPSHLLPSPSRS 120
PG+GAS V FR VVFRP VG +I K++ G+ ++LGFF+DI +P L PSR
Sbjct: 61 PGDGASHTEVLFRYVVFRPMVGTVITGKIRNCSREGVHVTLGFFDDILIPHAALQHPSR- 119
Query: 121 EPDPYGRYEVKWIWEF-----GDTKYVIDGLDEIKFRVLS--------VNYPSIPIEQAE 167
+ E W+WE+ +D + IKFRV + P + +
Sbjct: 120 ----FDEAEQAWVWEYPLEDGAKHDLFMDVGEPIKFRVSREIFEETSPIGPPKAEAQTQQ 175
Query: 168 G------------SKPFAPMVINGSIDYDGLGPVSWW 192
G + P I G+I+ GLG +SWW
Sbjct: 176 GASSSAAVASATSQEVKTPYRIIGAINESGLGVLSWW 212
>gi|255730589|ref|XP_002550219.1| DNA-directed RNA polymerase III 25 kDa polypeptide [Candida
tropicalis MYA-3404]
gi|240132176|gb|EER31734.1| DNA-directed RNA polymerase III 25 kDa polypeptide [Candida
tropicalis MYA-3404]
Length = 197
Score = 117 bits (294), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 68/201 (33%), Positives = 108/201 (53%), Gaps = 14/201 (6%)
Query: 1 MFYLSKIEHTLRLPPHLLRLPLNEAIKLELENVFLDKVIANLGLCISIYDIKEIEGGFVY 60
MF LS+I +R+PP + ++ EL + +K+IANLGL IS++D+ +I+ G +
Sbjct: 1 MFILSEISDLIRIPPSSFNTDIRVSLSDELHKKYSNKIIANLGLAISVWDLLDIKDGLLK 60
Query: 61 PGEGASTHTVKFRLVVFRPFVGEIIAAKLKESDANGLRLSLGFFEDIYVPSHLLPSPSRS 120
PG+G S VKFR +V++PF GEI+ + E A G+++ L FF++I++P L R
Sbjct: 61 PGDGGSYVEVKFRALVWKPFRGEILTGWVTECTAKGIKVRLEFFDEIWIPKEFLFENCR- 119
Query: 121 EPDPYGRYEVKWIWEFGDTKYVIDGLDEIKFRVLSVNYPSIP------IEQAEGSKP--- 171
+ E WI+ + + ID ++I+FRV + ++ IE+ E K
Sbjct: 120 ----FSESEQAWIYSLDENELFIDINEKIRFRVEEEIFYNVKPKTNSDIEEDEEEKAKNT 175
Query: 172 FAPMVINGSIDYDGLGPVSWW 192
P I S G+G VSWW
Sbjct: 176 LPPYSITASCQDYGMGCVSWW 196
>gi|344228476|gb|EGV60362.1| hypothetical protein CANTEDRAFT_110098 [Candida tenuis ATCC 10573]
Length = 201
Score = 117 bits (294), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 63/205 (30%), Positives = 112/205 (54%), Gaps = 18/205 (8%)
Query: 1 MFYLSKIEHTLRLPPHLLRLPLNEAIKLELENVFLDKVIANLGLCISIYDIKEIEGGFVY 60
MF L+K+ +RLPPH +P+++A+ E+ + +K+I N+GL ISI+DI++I+ G +
Sbjct: 1 MFILTKLSDLIRLPPHTFNVPIHQALTNEIHKKYSNKIIHNVGLAISIWDIEDIKEGLLR 60
Query: 61 PGEGASTHTVKFRLVVFRPFVGEIIAAKLKESDANGLRLSLGFFEDIYVPSHLLPSPSRS 120
PG+G S + FR++V++PF+GE++ + + + G+++ L FF++I++ +L
Sbjct: 61 PGDGGSHVEITFRMIVWKPFIGELLEGVVTDCNVEGIKVKLDFFDEIFIRKEML-----F 115
Query: 121 EPDPYGRYEVKWIWEFGD-TKYVIDGLDEIKFRVLSVNYPSIP------------IEQAE 167
E + E W W+ D + ID + I+FRV + +I ++A+
Sbjct: 116 ENCEFKGVERAWCWKPDDENELFIDLNERIRFRVEEEAFYNIKPRTDNSTTRDPEEDEAQ 175
Query: 168 GSKPFAPMVINGSIDYDGLGPVSWW 192
+ P I S G G VSWW
Sbjct: 176 KTNRTPPYAIYASCQAAGTGCVSWW 200
>gi|291000977|ref|XP_002683055.1| predicted protein [Naegleria gruberi]
gi|284096684|gb|EFC50311.1| predicted protein [Naegleria gruberi]
Length = 196
Score = 117 bits (294), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 67/194 (34%), Positives = 105/194 (54%), Gaps = 8/194 (4%)
Query: 1 MFYLSKIEHTLRLPPHLLRLPLNEAIKLELENVFLDKVIANLGLCISIYDIKEIEGGFVY 60
MF I+ TL + P + + A++ E+ + +K++ ++GLC+SIYD I +Y
Sbjct: 1 MFVTVVIKDTLIIKPERFKKDIVTAVEDEIHMKYSNKILPDVGLCVSIYDFISIGDPHIY 60
Query: 61 PGEGASTHT-VKFRLVVFRPFVGEIIAAKLKESD-ANGLRLSLGFFEDIYVPSHLLPSPS 118
P + + FRL+VF+PFVGEII ++ SD GL++++GFF DIY+P +LL P
Sbjct: 61 PNQQGNYFVEASFRLIVFKPFVGEIITGRIMGSDPEQGLKVAIGFFNDIYIPPYLLAQPC 120
Query: 119 RSEPDPYGRYEVKWIWEFGDTKYVIDGLDEIKFRVLSVNYPSIPIEQAEGSKPFAPMVIN 178
+ Y +W W + D EI+FRV S+ + + I+ + APM+I
Sbjct: 121 K-----YDEETSQWQWIYEDNALPYAHPQEIRFRVNSLTF-NTTIDSNPPHEEKAPMIIT 174
Query: 179 GSIDYDGLGPVSWW 192
G + GLG SWW
Sbjct: 175 GRANEPGLGLTSWW 188
>gi|303279531|ref|XP_003059058.1| predicted protein [Micromonas pusilla CCMP1545]
gi|226458894|gb|EEH56190.1| predicted protein [Micromonas pusilla CCMP1545]
Length = 711
Score = 117 bits (294), Expect = 2e-24, Method: Composition-based stats.
Identities = 76/159 (47%), Positives = 107/159 (67%), Gaps = 9/159 (5%)
Query: 1 MFYLSKIE-HTLRLPPHLLRLPLNEAIKLELENVFLDKVIANLGLCISIYDIKEIEGGFV 59
MF LS++E +++ P L P EAI +E +++DKVI +LGL I++YD+ +EGG V
Sbjct: 1 MFQLSRLEDDNVKILPENLGKPTLEAIVEVIERLYVDKVIRDLGLVITLYDVVSVEGGTV 60
Query: 60 YPGEGASTHTVKFRLVVFRPFVGEIIAAKLKESDANGLRLSLGFFEDIYVPSHLLPSPSR 119
YPGEG++ V FR+VVFRPFVGE++ A LK SD GLR+SLGFF+D++VP+HLL PS
Sbjct: 61 YPGEGSAHFKVVFRVVVFRPFVGEVLEATLKRSDEEGLRVSLGFFDDVFVPAHLLQDPSN 120
Query: 120 SEPDPYGRYEVKWIWEF-GDTKYVI--DGLDEIKFRVLS 155
+ E W+WE+ GD K + D ++I+ RV S
Sbjct: 121 -----FDDKEKLWVWEYQGDAKQKMHFDLEEKIRVRVQS 154
>gi|71017639|ref|XP_759050.1| hypothetical protein UM02903.1 [Ustilago maydis 521]
gi|46098719|gb|EAK83952.1| hypothetical protein UM02903.1 [Ustilago maydis 521]
Length = 249
Score = 117 bits (293), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 70/226 (30%), Positives = 107/226 (47%), Gaps = 39/226 (17%)
Query: 1 MFYLSKIEHTLRLPPHLLRLPLNEAIKLELENVFLDKVIANLGLCISIYDIKEIEGGFVY 60
MF L++IE T+ + P P +I ++ + +K++ ++GLCIS++DI G V
Sbjct: 1 MFALAEIEDTISVHPSAFGQPSLTSISGQINTKYANKILVDVGLCISLFDILSCSEGKVR 60
Query: 61 PGEGASTHTVKFRLVVFRPFVGEIIAAKLKESDANGLRLSLGFFEDIYVPSHLLPSPSRS 120
G+G H V FRL+VFRPF E++ K+K SD G+R+S+GFF+DIY+P HL+P P
Sbjct: 61 FGDGCLYHHVTFRLIVFRPFTQEVLTGKIKSSDEAGIRVSMGFFDDIYIPYHLIPKPC-- 118
Query: 121 EPDPYGRYEVKWIWEFG---------------DTKYVIDGLDEIKFRVLSVNY------P 159
+ E W W + + + +D + ++F V S + P
Sbjct: 119 ---AFDHQERAWFWLYEARTEQIAADPLLSQPEERMYLDTAEAVRFTVESDAFWDSEPGP 175
Query: 160 SIPIEQAEGSKPFA-------------PMVINGSIDYDGLGPVSWW 192
A+ + A I SI GLG VSWW
Sbjct: 176 GAATRSADSATQNALHQKEHTTKETKPHYSITASIAGSGLGLVSWW 221
>gi|224005523|ref|XP_002291722.1| RPC25,-like protein to dna-directed RNA polymerase III 25 kDa
polypeptide [Thalassiosira pseudonana CCMP1335]
gi|220972241|gb|EED90573.1| RPC25,-like protein to dna-directed RNA polymerase III 25 kDa
polypeptide [Thalassiosira pseudonana CCMP1335]
Length = 223
Score = 116 bits (291), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 70/204 (34%), Positives = 115/204 (56%), Gaps = 17/204 (8%)
Query: 1 MFYLSKIEHTLRLPPHLLRLPLNEAIKLELENVFLDKVIANLGLCISIYDIK-EIEGGFV 59
MF L+ + T+R+PP LL P +I+ E+ + +K+I ++GL I Y EI G +
Sbjct: 1 MFVLTLLADTIRIPPPLLSQPTLTSIQTEISKRYPNKIIVDVGLIICPYGPPLEIGDGIL 60
Query: 60 YPGEGASTHTVKFRLVVFRPFVGEIIAAKLKESDANGLRLSL-GFFEDIYVPSHLLPSPS 118
PG+G + H V F+ +VFRPFV E++ + + + G+ +S+ GFF+ +++P++ + +PS
Sbjct: 61 VPGDGGAHHQVLFQCLVFRPFVEEVLIGTVSDCNEEGVCVSVGGFFDHVFIPAYWMLNPS 120
Query: 119 RSEPDPYGRYEVKWIW------EFGDTKYVIDGLDEIKFRVLSVNYPSIPI----EQAEG 168
R Y W+W E + ++ I+ EI+F+V SVN+ I ++ +
Sbjct: 121 R-----YDEESGLWVWTPKTTTEKEENRFEIEIGAEIRFKVKSVNFTRITTTMKGQEPDS 175
Query: 169 SKPFAPMVINGSIDYDGLGPVSWW 192
+ APM I GSI DGLG SWW
Sbjct: 176 ANRPAPMQIVGSICEDGLGLTSWW 199
>gi|392585924|gb|EIW75262.1| hypothetical protein CONPUDRAFT_169647 [Coniophora puteana
RWD-64-598 SS2]
Length = 229
Score = 116 bits (290), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 71/214 (33%), Positives = 108/214 (50%), Gaps = 22/214 (10%)
Query: 1 MFYLSKIEHTLRLPPHLLRLPLNEAIKLELENVFLDKVIANLGLCISIYDIKEIEGGFVY 60
MF LS I+ T+ L P A+K L + ++V+ N+GLC++++D+ G V
Sbjct: 1 MFQLSIIKDTVPLHPATFGQAPEAALKHALNKKYANRVLHNVGLCVAVFDLVSAGSGRVR 60
Query: 61 PGEGASTHTVKFRLVVFRPFVGEIIAAKLKESDANGLRLSLGFFEDIYVPSHLLPSPSRS 120
G+G + V FR+VVFRPFVGE++ A+++ +D G+RL++GFF+D+YVP LP PS
Sbjct: 61 YGDGLLYYKVAFRMVVFRPFVGEVVIARVRSADEEGVRLTMGFFDDMYVPLAYLPQPSAF 120
Query: 121 EPDPYGRY------------EVKWIWEFGDTKYVIDGLDEIKFRVLSVNY----PSIPIE 164
+P + + D + ID + ++ RV S + P P
Sbjct: 121 DPSERAHFWLPSSDDDTETAPADLLDSPKDARMYIDAGEVLRVRVESDMFCDDEPGPPRA 180
Query: 165 QAEGSKP------FAPMVINGSIDYDGLGPVSWW 192
G P AP + SI GLGPV+WW
Sbjct: 181 GEGGVAPPPVRERRAPYSVVCSISEQGLGPVAWW 214
>gi|19112860|ref|NP_596068.1| DNA-directed RNA polymerase III complex subunit Rpc25
[Schizosaccharomyces pombe 972h-]
gi|74582844|sp|O94285.1|RPC8_SCHPO RecName: Full=DNA-directed RNA polymerase III subunit rpc8;
Short=RNA polymerase III subunit C8; AltName: Full=RNA
polymerase III subunit C25
gi|339961228|pdb|3AYH|B Chain B, Crystal Structure Of The C1725 SUBCOMPLEX FROM S. POMBE
RNA Polymerase Iii
gi|3850072|emb|CAA21883.1| DNA-directed RNA polymerase III complex subunit Rpc25
[Schizosaccharomyces pombe]
gi|76782157|gb|ABA54849.1| RNA polymerase III subunit Rpc25 [Schizosaccharomyces pombe]
Length = 203
Score = 116 bits (290), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 66/207 (31%), Positives = 105/207 (50%), Gaps = 20/207 (9%)
Query: 1 MFYLSKIEHTLRLPPHLLRLPLNEAIKLELENVFLDKVIANLGLCISIYDIKEIEGGFVY 60
MF LS+ + + P P EA+ E+ + +KVI N+GL I +YD +I G +
Sbjct: 1 MFLLSRFSDIISIHPSNFWKPTKEALAEEIHKKYANKVIQNIGLAICVYDFLKIGEGIIK 60
Query: 61 PGEGASTHTVKFRLVVFRPFVGEIIAAKLKESDANGLRLSLGFFEDIYVPSHLLPSPSRS 120
G+G+S V FRL++FRPF GE++ K+K G+R+++ FF+DI++P +L P
Sbjct: 61 YGDGSSYMNVVFRLIIFRPFRGEVMLGKIKSCSEEGIRVTISFFDDIFIPKDMLFDPCVF 120
Query: 121 EPDPYGRYEVKWIWEF------GDTKYVIDGLDEIKFRVLSVNYPSI---------PIEQ 165
PD E W+W+ T+ D +EI+F++ S ++ I I
Sbjct: 121 RPD-----ERAWVWKIEGEDGSEGTELYFDIDEEIRFQIESEDFVDISPKRNKNATAITG 175
Query: 166 AEGSKPFAPMVINGSIDYDGLGPVSWW 192
E + +P + S DGLG +WW
Sbjct: 176 TEALESVSPYTLIASCSRDGLGIPAWW 202
>gi|343429728|emb|CBQ73300.1| related to RPC25-DNA-direcred RNA polymerase III, 25 KD subunit
[Sporisorium reilianum SRZ2]
Length = 244
Score = 116 bits (290), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 70/222 (31%), Positives = 106/222 (47%), Gaps = 35/222 (15%)
Query: 1 MFYLSKIEHTLRLPPHLLRLPLNEAIKLELENVFLDKVIANLGLCISIYDIKEIEGGFVY 60
MF L+ I+ T+ + P P +I ++ + +K++ ++GLCIS++DI G V
Sbjct: 1 MFVLADIQDTISVHPSAFGQPSLTSISDQINVKYANKILVDVGLCISLFDILSCSEGKVR 60
Query: 61 PGEGASTHTVKFRLVVFRPFVGEIIAAKLKESDANGLRLSLGFFEDIYVPSHLLPSPSRS 120
G+G H V FRL+VFRPF E++ K+K SD G+R++LGFF+DIYVP HL+P P
Sbjct: 61 FGDGCLYHHVTFRLIVFRPFTQEVLTGKIKSSDEAGIRITLGFFDDIYVPFHLIPKPC-- 118
Query: 121 EPDPYGRYEVKWIWEF---------------GDTKYVIDGLDEIKFRVLSVNY------- 158
+ E W W + + + +D + ++F V S +
Sbjct: 119 ---AFDHQERAWFWLYEARTEQIAADPLLSQQEERMYLDTAEAVRFTVESDAFWDAEPGP 175
Query: 159 ---PSIPIEQAEGSKPFAPMV-----INGSIDYDGLGPVSWW 192
P A ++ A I SI GLG VSWW
Sbjct: 176 GTAPGTADSTAHHNQHTAKETRPHYSITASIAGSGLGLVSWW 217
>gi|195379674|ref|XP_002048603.1| GJ14059 [Drosophila virilis]
gi|194155761|gb|EDW70945.1| GJ14059 [Drosophila virilis]
Length = 246
Score = 115 bits (289), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 72/219 (32%), Positives = 112/219 (51%), Gaps = 32/219 (14%)
Query: 1 MFYLSKIEHTLRLPPHLLRLPLNEAIKLELENVFLDKVIANLGLCISIYDIKEIEGGFVY 60
MF L++++ +R+ P L L +A++ E++ +KV+ N+GLCI++ +I ++ +
Sbjct: 1 MFVLAELKDNVRIAPDHFNLKLVDAVRDEIDRKLANKVLLNVGLCIALKEIVSLKDSIIL 60
Query: 61 PGEGASTHTVKFRLVVFRPFVGEIIAAKLKESDANGLRLSLGFFEDIYVPSHLLPSPSRS 120
PG+GAS V FR VVFRP VG +I K++ G+ ++LGFF+DI +P L PSR
Sbjct: 61 PGDGASHTEVLFRYVVFRPMVGTVITGKIRSCCREGVNVTLGFFDDILIPHAALQHPSR- 119
Query: 121 EPDPYGRYEVKWIWEF-----GDTKYVIDGLDEIKFRV-LSVNYPSIPIE--QAEGSKPF 172
+ E W+WE+ G +D + IKFRV + + PI +AEG
Sbjct: 120 ----FDEAEQAWVWEYPLEDGGKHDLFMDVGEPIKFRVSREIFEETSPIGPPKAEGQAAQ 175
Query: 173 -------------------APMVINGSIDYDGLGPVSWW 192
P I G+I+ GLG +SWW
Sbjct: 176 NASTSAAAAAASAAAQEVKTPYKIIGAINESGLGVLSWW 214
>gi|194748262|ref|XP_001956568.1| GF25280 [Drosophila ananassae]
gi|190623850|gb|EDV39374.1| GF25280 [Drosophila ananassae]
Length = 244
Score = 115 bits (289), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 67/217 (30%), Positives = 109/217 (50%), Gaps = 30/217 (13%)
Query: 1 MFYLSKIEHTLRLPPHLLRLPLNEAIKLELENVFLDKVIANLGLCISIYDIKEIEGGFVY 60
MF L++++ +R+ P L L +A++ E++ +KV+ N+GLCI++ +I ++ +
Sbjct: 1 MFVLAELKDNVRIAPDQFNLQLVDAVRDEIDRKLANKVLLNVGLCIALKEIVSLKDSIIL 60
Query: 61 PGEGASTHTVKFRLVVFRPFVGEIIAAKLKESDANGLRLSLGFFEDIYVPSHLLPSPSRS 120
PG+GAS V FR VVFRP VG ++ K++ G+ ++LGFF+DI +P L PSR
Sbjct: 61 PGDGASHTEVLFRYVVFRPMVGTVLTGKIRNCSREGVHVTLGFFDDILIPHAALQHPSR- 119
Query: 121 EPDPYGRYEVKWIWEF-----GDTKYVIDGLDEIKFRVLS--------VNYPSIPIEQAE 167
+ E W+WE+ +D + IKFRV + P + +
Sbjct: 120 ----FDEAEQAWVWEYPLEDGAKHDLFMDVGEPIKFRVSREIFEETSPIGPPKAETQSQQ 175
Query: 168 G------------SKPFAPMVINGSIDYDGLGPVSWW 192
G + P I G+I+ GLG +SWW
Sbjct: 176 GASTSSAAASTTSQEVKTPYKIIGAINESGLGVLSWW 212
>gi|345311139|ref|XP_003429062.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed RNA polymerase III
subunit RPC8-like, partial [Ornithorhynchus anatinus]
Length = 190
Score = 115 bits (289), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 66/178 (37%), Positives = 98/178 (55%), Gaps = 19/178 (10%)
Query: 29 ELENVFLDKVIANLGLCISIYDIKEIEGGFVYPGEGASTHTVKFRLVVFRPFVGEIIAAK 88
EL +KV+ N+GLCI +YDI ++E +++PG+GAS V FR VVF PF+ EI+ +
Sbjct: 15 ELNKKLANKVVYNVGLCICLYDITKLEDAYIFPGDGASHTKVHFRYVVFHPFLDEILIGE 74
Query: 89 LKESDANGLRLSLGFFEDIYVPSHLLPSPSRSEPDPYGRYEVKWIWEF----GDTKYVID 144
+K G+ +SLGFF+DI +P L P++ + E W+WE+ G +D
Sbjct: 75 IKGCSPEGVHVSLGFFDDILIPPESLQQPAK-----FDEAEQVWVWEYETEEGAHDLYMD 129
Query: 145 GLDEIKFRVLSVNY----PSIP------IEQAEGSKPFAPMVINGSIDYDGLGPVSWW 192
+EI+FRV+ N+ P+ P + K AP + GSI GLG +SWW
Sbjct: 130 TGEEIRFRVVDENFVDTSPTGPSSAEASTSSEDPPKKEAPYTLVGSISEPGLGLLSWW 187
>gi|367007176|ref|XP_003688318.1| hypothetical protein TPHA_0N01030 [Tetrapisispora phaffii CBS 4417]
gi|357526626|emb|CCE65884.1| hypothetical protein TPHA_0N01030 [Tetrapisispora phaffii CBS 4417]
Length = 205
Score = 115 bits (289), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 69/209 (33%), Positives = 113/209 (54%), Gaps = 22/209 (10%)
Query: 1 MFYLSKIEHTLRLPPHLLRLPLNEAIKLELENVFLDKVIANLGLCISIYDIKEIEGGFVY 60
MF LS + +R+ P L AI +L + +K+IA+LGLC+++YD+ E++ G +
Sbjct: 1 MFILSLMSDLVRVLPEQFNLDNVTAITHQLNGKYANKIIAHLGLCVAVYDVLEVDEGQLR 60
Query: 61 PGEGASTHTVKFRLVVFRPFVGEIIAAKLKESDANGLRLSL-GFFEDIYVPSHLLPSPSR 119
PG+G+S V+FR ++F+PF+GEI+ + + +G+++SL G FEDI++P ++L
Sbjct: 61 PGDGSSYINVRFRALIFKPFIGEIVTGWITKCTVDGIKVSLSGMFEDIFIPKNML----- 115
Query: 120 SEPDPYGRYEVKWIWEFG-DTKYVIDGLDEIKFRVLSVNY----PSIPIE---------- 164
E + E W+W DT+ D ++I+FRV + P P E
Sbjct: 116 FEGCHFSVNENAWVWPMDEDTELYFDINEKIRFRVEQEVFIDVKPKSPKERDQEEKAKEN 175
Query: 165 -QAEGSKPFAPMVINGSIDYDGLGPVSWW 192
+ E ++ I GS DG+G VSWW
Sbjct: 176 GELETTEKLPSYAILGSCQTDGMGLVSWW 204
>gi|388853764|emb|CCF52485.1| related to RPC25-DNA-direcred RNA polymerase III, 25 KD subunit
[Ustilago hordei]
Length = 234
Score = 115 bits (288), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 71/220 (32%), Positives = 109/220 (49%), Gaps = 33/220 (15%)
Query: 1 MFYLSKIEHTLRLPPHLLRLPLNEAIKLELENVFLDKVIANLGLCISIYDIKEIEGGFVY 60
MF L+ IE T+ + P P +I ++ + +K++ ++GLCIS++DI G V
Sbjct: 1 MFVLADIEDTISVHPSAFGQPSLTSISDQINIKYANKILVDVGLCISLFDILSCSEGKVR 60
Query: 61 PGEGASTHTVKFRLVVFRPFVGEIIAAKLKESDANGLRLSLGFFEDIYVPSHLLPSPSRS 120
G+G H V FRL+VFRPF E++ K+K SD G+ +++GFF+DIYVPSHL+P P
Sbjct: 61 FGDGCLYHHVTFRLIVFRPFTQEVLTGKIKSSDEAGIHITVGFFDDIYVPSHLIPKPC-- 118
Query: 121 EPDPYGRYEVKWIWEF---------------GDTKYVIDGLDEIKFRVLSVNY----PSI 161
+ E W W + D + +D + ++F V S + P
Sbjct: 119 ---AFDHQERAWFWLYEARTEQIAADPLLSQQDERMYLDTGEVVRFTVESDAFHDAEPGP 175
Query: 162 P----IEQAEGSKPFAPMV-----INGSIDYDGLGPVSWW 192
P + + ++ A + I SI GLG VSWW
Sbjct: 176 PGAGESQNSHHNQHIAKEIKPHYSITASIAGSGLGLVSWW 215
>gi|393905506|gb|EJD73994.1| RNA polymerase Rpb7 domain-containing protein, variant [Loa loa]
Length = 207
Score = 115 bits (287), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 66/169 (39%), Positives = 95/169 (56%), Gaps = 11/169 (6%)
Query: 30 LENVFLDKVIANLGLCISIYDIKEIEGGFVYPGEGASTHTVKFRLVVFRPFVGEIIAAKL 89
L F +K++ LGLCI IYD+ +I ++ PG+G++ VKFR VVFRPF+ E+I AK+
Sbjct: 12 LNEQFANKIVPGLGLCIIIYDLVDIGASYILPGDGSTHTKVKFRFVVFRPFIDEVIEAKV 71
Query: 90 KESDANGLRLSLGFFEDIYVPSHLLPSPSRSEPDPYGRYEVKWIWEF-----GDTKYVID 144
S+A GL LS+ FFEDI++P+H LP PS E + E W W++ K +D
Sbjct: 72 LSSNAEGLMLSVIFFEDIFIPAHRLPQPSVFEEE-----EQIWYWDYQPEDGQSAKLYMD 126
Query: 145 GLDEIKFRVLSVNYPSI-PIEQAEGSKPFAPMVINGSIDYDGLGPVSWW 192
++FRV+ + + P + K I GS+ GLG V WW
Sbjct: 127 PGKTVRFRVIDNIFKDVDPNSSQDELKREKSYQIIGSMAETGLGCVLWW 175
>gi|195128795|ref|XP_002008847.1| GI13714 [Drosophila mojavensis]
gi|193920456|gb|EDW19323.1| GI13714 [Drosophila mojavensis]
Length = 245
Score = 115 bits (287), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 70/218 (32%), Positives = 113/218 (51%), Gaps = 31/218 (14%)
Query: 1 MFYLSKIEHTLRLPPHLLRLPLNEAIKLELENVFLDKVIANLGLCISIYDIKEIEGGFVY 60
MF L++++ +R+ P L L +A++ E++ +KV+ N+GLCI++ +I ++ +
Sbjct: 1 MFVLAELKDNVRIAPDHFNLKLVDAVRDEIDRKLANKVLLNVGLCIAMKEIVSLKDSIIL 60
Query: 61 PGEGASTHTVKFRLVVFRPFVGEIIAAKLKESDANGLRLSLGFFEDIYVPSHLLPSPSRS 120
PG+GAS V FR +VFRP VG ++ K++ G+ ++LGFF+DI +P L PSR
Sbjct: 61 PGDGASHTEVLFRYIVFRPMVGTVMTGKIRNCSREGVNVTLGFFDDILIPHAALQHPSR- 119
Query: 121 EPDPYGRYEVKWIWEF-----GDTKYVIDGLDEIKFRV-LSVNYPSIPIE--QAEGSKPF 172
+ E W+WE+ G +D + IKFRV + + PI +AEG +
Sbjct: 120 ----FDEAEQAWVWEYPLDDGGKHDLFMDVGEPIKFRVSREIFEETSPIGPPKAEGQQSQ 175
Query: 173 ------------------APMVINGSIDYDGLGPVSWW 192
P I G+I+ GLG +SWW
Sbjct: 176 NASSSNAAAAATAAQEVKTPYKIIGAINESGLGVLSWW 213
>gi|422294115|gb|EKU21415.1| DNA-directed RNA polymerase III subunit RPC8 [Nannochloropsis
gaditana CCMP526]
Length = 220
Score = 115 bits (287), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 66/221 (29%), Positives = 110/221 (49%), Gaps = 62/221 (28%)
Query: 29 ELENVFLDKVIANLGLCISIYDIKEIEGGFVYPGEGASTHTVKFRLVVFRPFVGEIIAAK 88
E++ + ++++ N+GL + +YD +I ++YP +GA+ H V FRL+VFRPF+GE++ +
Sbjct: 4 EVDRKYANRIVMNVGLGVCLYDFVDIGDAYLYPSDGAAHHRVTFRLMVFRPFIGEVLVGR 63
Query: 89 LKESDANGLRLSLGFFEDIYVPSHLLPSPSRSEPDPYGRYEVKWIWEFGD-------TKY 141
+K+ NG+++SLGFF+DI+VPS+LL +PS +P E W+W + +Y
Sbjct: 64 VKQCSENGIKISLGFFDDIFVPSYLLQTPSEFDP-----RENVWVWSYSSDEPGEPAVRY 118
Query: 142 VIDGLDEIKFRVLSVNY------------------------------PSIPIEQAEG--- 168
++ + I+FRV SVN+ P P + EG
Sbjct: 119 PMEVDEFIRFRVRSVNFTHTKYSGSGGSGAVGGLGNVATGPVGTVGNPVNPKVEVEGGGL 178
Query: 169 -----------------SKPFAPMVINGSIDYDGLGPVSWW 192
P PM + G+ + DGLG ++WW
Sbjct: 179 GQVRRPRSDTLTGDESVGGPLPPMQLLGTTNEDGLGMLAWW 219
>gi|261197898|ref|XP_002625351.1| DNA-directed RNA polymerase III polypeptide [Ajellomyces
dermatitidis SLH14081]
gi|239595314|gb|EEQ77895.1| DNA-directed RNA polymerase III polypeptide [Ajellomyces
dermatitidis SLH14081]
gi|239607836|gb|EEQ84823.1| DNA-directed RNA polymerase III polypeptide [Ajellomyces
dermatitidis ER-3]
gi|327355776|gb|EGE84633.1| DNA-directed RNA polymerase III subunit polypeptide [Ajellomyces
dermatitidis ATCC 18188]
Length = 195
Score = 115 bits (287), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 73/201 (36%), Positives = 106/201 (52%), Gaps = 16/201 (7%)
Query: 1 MFYLSKIEHTLRLPPHLLRLPLNEAIKLELENVFLDKVIANLGLCISIYDIKEIEGGFVY 60
MF L+ I +++ P AI+ + + +KVI N+GLCIS YD+ E G +
Sbjct: 1 MFILTTISDLVQISPEDFSKLSAVAIEDNINEKYANKVIQNVGLCISFYDLLESSDGLIG 60
Query: 61 PGEGASTHTVKFRLVVFRPFVGEIIAAKLKESDANGLRLSLGFFEDIYVPSHLLPSPSRS 120
G G VKFRL+VFRPF GEII K+ NG+++SL FF DI++P LL +R
Sbjct: 61 HGTGLVNVNVKFRLIVFRPFKGEIILGKITSGTENGIKISLEFFNDIFIPPSLLLDGAR- 119
Query: 121 EPDPYGRYEVKWIWEFGDTK-YVIDGLDEIKFRVLSVNY----PSIPIEQAEGS----KP 171
+ + WIW+ G+ + D + ++FRV + + P P +Q G+ KP
Sbjct: 120 ----FDFADQVWIWDNGEGAIFYFDIGETVRFRVEAEEWHDQIPDAPDDQEGGAVMERKP 175
Query: 172 FAPMVINGSIDYDGLGPVSWW 192
P I GS+ GLG V+WW
Sbjct: 176 --PYSIIGSMQIAGLGLVAWW 194
>gi|258597195|ref|XP_001347734.2| RNA polymerase subunit, putative [Plasmodium falciparum 3D7]
gi|254832590|gb|AAN35647.2| RNA polymerase subunit, putative [Plasmodium falciparum 3D7]
Length = 186
Score = 115 bits (287), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 72/192 (37%), Positives = 102/192 (53%), Gaps = 7/192 (3%)
Query: 1 MFYLSKIEHTLRLPPHLLRLPLNEAIKLELENVFLDKVIANLGLCISIYDIKEIEGGFVY 60
MF L +IE L + H + I+ L ++DKVI N+G C+ +YDI EI+ +
Sbjct: 1 MFSLFRIEDVLNIETHFKDSEIKNVIEFLLRAKYIDKVIQNVGFCVGLYDIIEIKNKEII 60
Query: 61 PGEGASTHTVKFRLVVFRPFVGEIIAAKLKESDANGLRLSLGFFEDIYVPSHLLPSPSRS 120
G G V FRLV+F+PF EII +K SD+NG+ +SLGFFE+I V S L
Sbjct: 61 KGSGEIRLKVIFRLVIFQPFENEIIEGFVKSSDSNGIIISLGFFENIRVNSANLK----- 115
Query: 121 EPDPYGRYEVKWIWEFGDTKYVIDGLDEIKFRVLSVNYPSIPIEQAEGSKPFAPMVINGS 180
EP + R + +W W + K+ + I+ R+L Y S P E + + M I G+
Sbjct: 116 EPKEFDREKKEWYWTYEGIKFFYTKDELIRVRILDT-YFSDPNEMNK-DESIPSMSITGT 173
Query: 181 IDYDGLGPVSWW 192
+ DGLG V WW
Sbjct: 174 VQQDGLGLVKWW 185
>gi|449548373|gb|EMD39340.1| hypothetical protein CERSUDRAFT_134380 [Ceriporiopsis subvermispora
B]
Length = 234
Score = 115 bits (287), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 78/225 (34%), Positives = 113/225 (50%), Gaps = 35/225 (15%)
Query: 1 MFYLSKIEHTLRLPPHLLRLPLNEAIKLELENVFLDKVIANLGLCISIYDIKEIEGGFVY 60
MF LS ++ T+ + P LP +AI EL + ++V+ ++GLC+ ++D+ E+ G V
Sbjct: 1 MFQLSILKDTVAVHPSNFGLPPEQAITNELNKKYANRVLHDVGLCVCVFDLSEVGEGKVR 60
Query: 61 PGEGASTHTVKFRLVVFRPFVGEIIAAKLKESDANGLRLSLGFFEDIYVPSHLLPSPSRS 120
G+G + V FRLVVFRPF E++ AK+K SD +G+RL+LGFF+DIYV LP P
Sbjct: 61 YGDGFLWYKVVFRLVVFRPFASEVLLAKVKSSDEDGIRLTLGFFDDIYVSQMFLPEPCAL 120
Query: 121 EP------------DPYGRY-------EVKWIWEFGDT----KYVIDGLDEIKFRVLSVN 157
+ DP R E+ E DT + ID + ++ RV
Sbjct: 121 QVNFHVIFGQILDIDPNERAFFWLPNSEITSTHEMLDTPLTDRMYIDTGEVVRVRVEHDE 180
Query: 158 Y----PSIP------IEQAEGSKPFAPMVINGSIDYDGLGPVSWW 192
+ P P +Q E +P P I SI GLGP +WW
Sbjct: 181 FYDDEPGPPKATEGVQQQRERRRP--PYTITCSIAEQGLGPTAWW 223
>gi|410082637|ref|XP_003958897.1| hypothetical protein KAFR_0H03520 [Kazachstania africana CBS 2517]
gi|372465486|emb|CCF59762.1| hypothetical protein KAFR_0H03520 [Kazachstania africana CBS 2517]
Length = 204
Score = 114 bits (286), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 70/211 (33%), Positives = 114/211 (54%), Gaps = 27/211 (12%)
Query: 1 MFYLSKIEHTLRLPPHLLRLPLNEAIKLELENVFLDKVIANLGLCISIYDIKEIEGGFVY 60
MF LS++ +R+PP +I +L + + +KVI ++GLC+++YDI E + G +
Sbjct: 1 MFILSRVNDLVRIPPDQFHRDAVSSITHQLNDRYANKVIPHVGLCVTVYDILEADEGQLK 60
Query: 61 PGEGASTHTVKFRLVVFRPFVGEIIAAKLKESDANGLRLS-LGFFEDIYVPSHLLPSPSR 119
PG+G+S V FR +VF+PFVGEI+ + + A G+++S LG F+DI++P ++L
Sbjct: 61 PGDGSSYVNVTFRALVFKPFVGEIVTGWISKCTAEGIQVSLLGLFDDIFIPKNMLFEGCY 120
Query: 120 SEPDPYGRYEVKWIWEFG-DTKYVIDGLDEIKFRVLSVNY----PSIP------------ 162
EP+ ++ WIW +TK D ++++FRV + P P
Sbjct: 121 FEPN-----DLAWIWPMDEETKLYFDVNEKVRFRVEKEIFVDVKPKAPREQEQDEQEEEA 175
Query: 163 -IEQAEGSKPFAPMVINGSIDYDGLGPVSWW 192
+ E S +A + GS DG+G VSWW
Sbjct: 176 QDKAVEKSPAYALL---GSCQTDGMGLVSWW 203
>gi|195018138|ref|XP_001984729.1| GH14863 [Drosophila grimshawi]
gi|193898211|gb|EDV97077.1| GH14863 [Drosophila grimshawi]
Length = 246
Score = 114 bits (286), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 71/221 (32%), Positives = 112/221 (50%), Gaps = 34/221 (15%)
Query: 1 MFYLSKIEHTLRLPPHLLRLPLNEAIKLELENVFLDKVIANLGLCISIYDIKEIEGGFVY 60
MF L++++ +R+ P L L +A++ E++ +KV+ N+GLCI++ +I ++ +
Sbjct: 1 MFVLAELKDNVRIAPDQFNLKLVDAVRDEIDRKLANKVLLNVGLCIALKEIVSLKDSIIL 60
Query: 61 PGEGASTHTVKFRLVVFRPFVGEIIAAKLKESDANGLRLSLGFFEDIYVPSHLLPSPSRS 120
PG+GAS V FR VVFRP VG ++ K++ G+ ++LGFF+DI +P L PSR
Sbjct: 61 PGDGASHTEVLFRYVVFRPMVGTVMTGKIRTCSREGVHVTLGFFDDILIPHAALQHPSR- 119
Query: 121 EPDPYGRYEVKWIWEF-----GDTKYVIDGLDEIKFRV-LSVNYPSIPIE--QAEGSKPF 172
+ E W+WE+ +D + IKFRV + + PI +AEG
Sbjct: 120 ----FDEAEQAWVWEYPLEDGNKHDLFMDVGEPIKFRVSREIFEETSPIGPPKAEGQASQ 175
Query: 173 ---------------------APMVINGSIDYDGLGPVSWW 192
AP I G+I+ GLG +SWW
Sbjct: 176 NANTSAAAAAAATVAASQEVKAPYKIIGAINESGLGVLSWW 216
>gi|45185736|ref|NP_983452.1| ACR049Wp [Ashbya gossypii ATCC 10895]
gi|44981491|gb|AAS51276.1| ACR049Wp [Ashbya gossypii ATCC 10895]
gi|374106658|gb|AEY95567.1| FACR049Wp [Ashbya gossypii FDAG1]
Length = 210
Score = 114 bits (286), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 74/215 (34%), Positives = 113/215 (52%), Gaps = 29/215 (13%)
Query: 1 MFYLSKIEHTLRLPPHLLRLPLNEAIKLELENVFLDKVIANLGLCISIYDIKEIEGGFVY 60
MF L+KI +R+PP AI +L N + +K+I ++GLCI+IYD+ ++ G +
Sbjct: 1 MFILTKISDLVRIPPDQFHRDTASAINHQLNNKYANKIIPHVGLCITIYDLLTVDEGQLK 60
Query: 61 PGEGASTHTVKFRLVVFRPFVGEIIAAKLKESDANGLRLS-LGFFEDIYVPSHLLPSPSR 119
PG+GAS V FR +VF+PFVGEII + + G+++S LG F+DI++P+ +L
Sbjct: 61 PGDGASFINVTFRALVFKPFVGEIITGWITQCTNEGIKVSLLGMFDDIFIPAKML----- 115
Query: 120 SEPDPYGRYEVKWIWEFG-DTKYVIDGLDEIKFRVLSVNY----PSIPI----------- 163
E Y + W+W+ +TK D ++I+FRV + P P
Sbjct: 116 FEGSYYSVDDSAWVWQMDEETKLYFDVNEKIRFRVEQEVFVDVKPKSPREQELEEQLKEK 175
Query: 164 ------EQAEGSKPFAPMVINGSIDYDGLGPVSWW 192
E+ KP A ++ GS DG+G VSWW
Sbjct: 176 DTLTEEEKRLVEKPPAYALL-GSCQTDGMGLVSWW 209
>gi|342905869|gb|AEL79218.1| DNA-directed RNA polymerase III 25 kDa polypeptide [Rhodnius
prolixus]
Length = 130
Score = 114 bits (286), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 52/135 (38%), Positives = 80/135 (59%), Gaps = 5/135 (3%)
Query: 1 MFYLSKIEHTLRLPPHLLRLPLNEAIKLELENVFLDKVIANLGLCISIYDIKEIEGGFVY 60
MF L+ +R PP L + L +I L +KV+ N+GLC+ ++DI+ ++ F++
Sbjct: 1 MFKLTSFRDVIRTPPALFDVDLKTSISNYLNEKLSNKVVKNIGLCVVLFDIESMDDSFLF 60
Query: 61 PGEGASTHTVKFRLVVFRPFVGEIIAAKLKESDANGLRLSLGFFEDIYVPSHLLPSPSRS 120
PG+G + V+FR VVFRPF+ E+I K+K G+ ++LGFF+DI++P L PSR
Sbjct: 61 PGDGGAHTKVEFRFVVFRPFIEEVIVGKIKNCTKEGVHVTLGFFDDIFIPESCLQHPSR- 119
Query: 121 EPDPYGRYEVKWIWE 135
+ E WIWE
Sbjct: 120 ----FDESEQVWIWE 130
>gi|365984895|ref|XP_003669280.1| hypothetical protein NDAI_0C03770 [Naumovozyma dairenensis CBS 421]
gi|343768048|emb|CCD24037.1| hypothetical protein NDAI_0C03770 [Naumovozyma dairenensis CBS 421]
Length = 225
Score = 114 bits (285), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 76/228 (33%), Positives = 111/228 (48%), Gaps = 41/228 (17%)
Query: 1 MFYLSKIEHTLRLPPHLLRLPLNEAIKLELENVFLDKVIANLGLCISIYDIKEIEGGFVY 60
MF LSKI +R+PP I EL N + +K++ ++GLCI++YDI E++ G +
Sbjct: 1 MFILSKISDLVRIPPDQFHRDTLSCITHELNNKYANKIVPHIGLCITVYDILEVDEGQLK 60
Query: 61 PGEGASTHTVKFRLVVFRPFVGEIIAAKLKESDANGLRLS-LGFFEDIYVPSHLLPSPSR 119
PG+GAS +V FR ++F+PFVGEII + + A G+++S LG FEDI++P +L
Sbjct: 61 PGDGASYISVIFRGLIFKPFVGEIITGWISKCTAEGIKVSLLGMFEDIFIPKKMLFEGCY 120
Query: 120 SEPDPYGRYEVKWIWEF-GDTKYVIDGLDEIKFRV------------------------- 153
P+ + W+W DTK D ++I+FRV
Sbjct: 121 YSPE-----DSAWVWPMEEDTKLYFDLNEKIRFRVEQEVFVDVKPKSPKEREMEEQEQQL 175
Query: 154 -------LSVNYPSIPIEQAEGSKPFAP--MVINGSIDYDGLGPVSWW 192
N + EQ E K P + GS DG+G VSWW
Sbjct: 176 QLQKQEERKANGGDVKEEQEEIVKVEKPPAYALLGSCQTDGMGLVSWW 223
>gi|389745440|gb|EIM86621.1| polymerase III polypeptide H [Stereum hirsutum FP-91666 SS1]
Length = 220
Score = 114 bits (285), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 74/212 (34%), Positives = 112/212 (52%), Gaps = 22/212 (10%)
Query: 1 MFYLSKIEHTLRLPPHLLRLPLNEAIKLELENVFLDKVIANLGLCISIYDIKEIEGGFVY 60
MF LS I+ T+ + P LP +A+ EL + +KV+ ++GLCI ++DI E G V
Sbjct: 1 MFVLSIIKDTIPIQPSHFGLPPEQALITELNKKYANKVLHDVGLCICVFDIAEAGEGKVR 60
Query: 61 PGEGASTHTVKFRLVVFRPFVGEIIAAKLKESDANGLRLSLGFFEDIYVPSHLLPSPSRS 120
G+G + V FRL VFRPF E+I AK+K SD +G+ LS+GFFED+++P + LP PS
Sbjct: 61 YGDGFLWYAVVFRLTVFRPFPSEVILAKVKSSDEDGIHLSVGFFEDMWIPLNYLPQPSAF 120
Query: 121 EPDPYGRYEVKWIWEFGDTKYVIDG-------LDE---IKFRVLSVNY----PSIPIEQA 166
+ + + + T ++D +D+ ++ RV + + P P Q
Sbjct: 121 DVNERAHFWLPSAEATATTHELLDSPTSERMYIDQGEIVRVRVETDEFYDDEPGPPKAQE 180
Query: 167 ------EGSKPFAPMVINGSIDYDGLGPVSWW 192
E +P P + SI GLGPV+WW
Sbjct: 181 GIQVVREARRP--PYNVTCSIAEQGLGPVAWW 210
>gi|328872887|gb|EGG21254.1| hypothetical protein DFA_01132 [Dictyostelium fasciculatum]
Length = 1058
Score = 114 bits (285), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 72/220 (32%), Positives = 113/220 (51%), Gaps = 34/220 (15%)
Query: 1 MFYLSKIEHTLRLPPHLLRLPLNEAIKLELENVFLDKVIANLGLCISIYDIKEIEGGFVY 60
MF+L IE +R+PP L + I+ E+E + +K++ N GL I++YDI ++Y
Sbjct: 794 MFHLITIEDKVRIPPSAFENEL-QTIEDEIEKKYTNKILINGGLFIALYDILGTGDAYIY 852
Query: 61 PGEGASTHTVKFRLVVFRPFVGEIIAAKLKESDANGLRLSLGFFEDIYVPSHLLPSPSRS 120
G+G S V+ RLVVF+PFVGEI+ +K++ + + +SLGF+ D+ + S LP+PS
Sbjct: 853 SGDGGSHLIVRCRLVVFKPFVGEILEGVIKKTTKDYIIVSLGFYNDVMISSIDLPNPSF- 911
Query: 121 EPDPYGRYEVKWIWEFGDTKYVIDGLDEIKFRVLSVNY---------------------- 158
Y E W WE+ DT+ + ++F+V +V +
Sbjct: 912 ----YDEGEQLWYWEWADTQLFFEARGRVRFKVDNVEFNPAISQPAPKAKIAPTNTADIA 967
Query: 159 -----PSIPIEQAEGSKPF-APMVINGSIDYDGLGPVSWW 192
I E+ E K +PM++ GS+ GLG VSWW
Sbjct: 968 LIKEQERIDRERDEYLKNLKSPMIVRGSMRDSGLGMVSWW 1007
>gi|50309129|ref|XP_454570.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
gi|49643705|emb|CAG99657.1| KLLA0E13751p [Kluyveromyces lactis]
Length = 210
Score = 114 bits (285), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 71/214 (33%), Positives = 109/214 (50%), Gaps = 27/214 (12%)
Query: 1 MFYLSKIEHTLRLPPHLLRLPLNEAIKLELENVFLDKVIANLGLCISIYDIKEIEGGFVY 60
MF L+K+ +R+PP + I EL + +K+I ++GLC+++YD+ +++ G +
Sbjct: 1 MFILTKVADLVRIPPDQFKRDTISTIVHELNTKYANKIIPHIGLCVTVYDVLDVDEGQLK 60
Query: 61 PGEGASTHTVKFRLVVFRPFVGEIIAAKLKESDANGLRLS-LGFFEDIYVPSHLLPSPSR 119
PG+GA+ V FR +VF+PFVGEI+ + + G+++S LG FEDI+VP ++L S
Sbjct: 61 PGDGAAFINVTFRALVFKPFVGEIVTGWISQCTTEGIKVSLLGLFEDIFVPQNMLFEGSY 120
Query: 120 SEPDPYGRYEVKWIWEFGD-TKYVIDGLDEIKFRVLSVNY----PSIPIEQAEGSKPFAP 174
P E WIW D TK D ++I+FRV + P P E+ + A
Sbjct: 121 FSPK-----ENAWIWPMDDETKLYFDVNEKIRFRVEQEVFVDVKPKSPKEKELEDQLRAK 175
Query: 175 MVIN----------------GSIDYDGLGPVSWW 192
+ GS DG G VSWW
Sbjct: 176 QELTEEEKRILEKPPAYALLGSCQTDGTGLVSWW 209
>gi|425771830|gb|EKV10263.1| hypothetical protein PDIP_61090 [Penicillium digitatum Pd1]
gi|425777177|gb|EKV15361.1| hypothetical protein PDIG_26640 [Penicillium digitatum PHI26]
Length = 193
Score = 114 bits (285), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 69/200 (34%), Positives = 102/200 (51%), Gaps = 15/200 (7%)
Query: 1 MFYLSKIEHTLRLPPHLLRLPLNEAIKLELENVFLDKVIANLGLCISIYDIKEIEGGFVY 60
MF L+ I +++ P A++ + + +KVI +GLCIS YD+ E G +
Sbjct: 1 MFVLTTISDLIQISPEDFSKFSAVALEDNINAKYANKVIQKIGLCISFYDLLESSDGLIG 60
Query: 61 PGEGASTHTVKFRLVVFRPFVGEIIAAKLKESDANGLRLSLGFFEDIYVPSHLLPSPSRS 120
G G VKFR++VFRPF GEI+ K+ +G+++ L FF DI +P +L SR
Sbjct: 61 HGTGLVNVNVKFRMIVFRPFKGEIMLGKISSGTEHGIKIGLEFFNDILIPPQMLMEKSR- 119
Query: 121 EPDPYGRYEVKWIWEF-GDTKYVIDGLDEIKFRVLSV-------NYPSIPIEQAEGSKPF 172
+ E WIWE G T++ D + ++FRV S N P I E + +P
Sbjct: 120 ----FDYAEQVWIWESEGGTEFFFDVGEVVRFRVESEEWHDQIPNAPDIADETPQERRP- 174
Query: 173 APMVINGSIDYDGLGPVSWW 192
P I GS+ G GP++WW
Sbjct: 175 -PYSILGSMQMGGTGPITWW 193
>gi|412992998|emb|CCO16531.1| predicted protein [Bathycoccus prasinos]
Length = 238
Score = 114 bits (284), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 78/225 (34%), Positives = 120/225 (53%), Gaps = 41/225 (18%)
Query: 1 MFYLSKIEHTLRL--PPHLLRLPLNEAIKLELENVFLDKVIANLGLCISIYDIKEIEGGF 58
MF +++++ + P HL + PL AI ELE +++DKVI +LGL +++Y++ I+GG
Sbjct: 1 MFQIARLKDSAVTIKPQHLDKEPLT-AIVAELEELYVDKVITDLGLVVTLYEVNSIKGGI 59
Query: 59 VYPGEGASTHTVKFRLVVFRPFVGEIIAAKLKE-SDANGLRLSLGFFEDIYVPSHLLPSP 117
+Y G+GA+ + V+FR+VVF PFV EI+ K+ +D NG+R+SLGFF+D+ V LP+
Sbjct: 60 IYAGDGAAHYEVEFRMVVFSPFVNEILVGKVYSLTDENGIRVSLGFFDDLIV----LPNK 115
Query: 118 SRS--EPDPYGRYEVKWIWEFGDTKYVIDGLDE-------------------IKFRVLSV 156
S E + E W E +++ + +E I+ RV V
Sbjct: 116 SGMDLEKTKWDDKEKIWYIEEESVEFLAESNNEGNREEIGLMVKKFIEPGQQIRVRVTQV 175
Query: 157 NYPSIPIEQAEGSK-----------PFAPMVINGSI-DYDGLGPV 189
YP P + E K FAPM++ SI + D LGPV
Sbjct: 176 TYPEEPKTKQELQKRKLEDGGQREGKFAPMIVRCSIGELDALGPV 220
>gi|298204967|emb|CBI34274.3| unnamed protein product [Vitis vinifera]
Length = 195
Score = 113 bits (283), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 61/102 (59%), Positives = 75/102 (73%), Gaps = 11/102 (10%)
Query: 1 MFYLSKIEHTLRLPPHLLRLPLNEAIKLELENVFLDKVIANLGLCISIYDIKEIEGGFVY 60
MF+LS IEHTLRL PHLL LPL+EAIK ELE++FLDKV+ANLGLCI + DI+ I+GGFV+
Sbjct: 1 MFFLSLIEHTLRLSPHLLDLPLSEAIKGELESLFLDKVVANLGLCIFVNDIRSIDGGFVF 60
Query: 61 PGEGASTHTVKFR-----------LVVFRPFVGEIIAAKLKE 91
PG+ AST +K + LV+F FV +II AKLK
Sbjct: 61 PGDSASTCILKSKIWFSYFIYLGLLVMFGLFVKDIITAKLKR 102
>gi|322790751|gb|EFZ15495.1| hypothetical protein SINV_12920 [Solenopsis invicta]
Length = 145
Score = 112 bits (281), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 52/136 (38%), Positives = 85/136 (62%), Gaps = 5/136 (3%)
Query: 1 MFYLSKIEHTLRLPPHLLRLPLNEAIKLELENVFLDKVIANLGLCISIYDIKEIEGGFVY 60
MF L +++ T+R+ P + LN+ I EL +KV ++GLCI+++DI +IE +++
Sbjct: 1 MFVLVELKDTVRIQPSSFKQKLNDVIANELNRKLANKVYKDVGLCITLHDITKIEESYIF 60
Query: 61 PGEGASTHTVKFRLVVFRPFVGEIIAAKLKESDANGLRLSLGFFEDIYVPSHLLPSPSRS 120
PG+GAS V FR +VFRP++ EI+ K++ G+ ++LGFFEDI +P H L PS
Sbjct: 61 PGDGASHTKVTFRFIVFRPWMEEILIGKIRSCSPEGVHVTLGFFEDIVIPPHKLQHPSH- 119
Query: 121 EPDPYGRYEVKWIWEF 136
+ + E W+W++
Sbjct: 120 ----FDQREQVWLWKY 131
>gi|367014661|ref|XP_003681830.1| hypothetical protein TDEL_0E03760 [Torulaspora delbrueckii]
gi|359749491|emb|CCE92619.1| hypothetical protein TDEL_0E03760 [Torulaspora delbrueckii]
Length = 210
Score = 112 bits (280), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 71/215 (33%), Positives = 110/215 (51%), Gaps = 29/215 (13%)
Query: 1 MFYLSKIEHTLRLPPHLLRLPLNEAIKLELENVFLDKVIANLGLCISIYDIKEIEGGFVY 60
MF LSKI +R+ P A+ +L N F +KVI ++GLCI+IYD+ E++ G +
Sbjct: 1 MFILSKINDLVRISPDQFHRDTASAVTHQLNNKFANKVIPHVGLCITIYDLLEVDEGQLK 60
Query: 61 PGEGASTHTVKFRLVVFRPFVGEIIAAKLKESDANGLRLSL-GFFEDIYVPSHLLPSPSR 119
PG+GAS V FR +VF+PF GE++ + + A G+++SL G FEDI++P +L
Sbjct: 61 PGDGASYIYVTFRALVFKPFAGEVLTGWISKCTAEGIKVSLMGVFEDIFLPKKMLFEGCL 120
Query: 120 SEPDPYGRYEVKWIWEFG-DTKYVIDGLDEIKFRVLSVNYPSIPIEQAEG---------- 168
PD + W+W +TK D ++I+FRV + + + +
Sbjct: 121 YSPD-----DSAWVWPMDEETKLYFDVNEKIRFRVEQEVFVDVKPKSPKERELEEQAEQQ 175
Query: 169 -----------SKPFAPMVINGSIDYDGLGPVSWW 192
+KP A ++ GS DG+G V WW
Sbjct: 176 QKEEGLPVNIVTKPPAYAIL-GSCQTDGMGVVGWW 209
>gi|212541336|ref|XP_002150823.1| DNA-directed RNA polymerase III subunit 22.9 kDa, putative
[Talaromyces marneffei ATCC 18224]
gi|210068122|gb|EEA22214.1| DNA-directed RNA polymerase III subunit 22.9 kDa, putative
[Talaromyces marneffei ATCC 18224]
Length = 194
Score = 112 bits (280), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 71/198 (35%), Positives = 102/198 (51%), Gaps = 11/198 (5%)
Query: 1 MFYLSKIEHTLRLPPHLLRLPLNEAIKLELENVFLDKVIANLGLCISIYDIKEIEGGFVY 60
MF L+ I +++ P AI+ + + +KVI +GLCI YD+ + G +
Sbjct: 1 MFLLATISDLVQIRPEDFSKFSAVAIEDNINEKYANKVIQKIGLCIGFYDLLKSSDGLIG 60
Query: 61 PGEGASTHTVKFRLVVFRPFVGEIIAAKLKESDANGLRLSLGFFEDIYVPSHLLPSPSRS 120
G G V FRL+VFRPF GEI+ K+ + GL+++L FF DI VP+ LL SR
Sbjct: 61 HGTGLVNVNVTFRLIVFRPFKGEILLGKIASASEEGLKINLEFFGDITVPAALLFDGSR- 119
Query: 121 EPDPYGRYEVKWIWEFGDTKYVIDGLDEIKFRVLSVNY----PSIP--IEQAEGSKPFAP 174
+ E WIWE G+ Y D + ++FRV S + P+ P +E S+ P
Sbjct: 120 ----FDLAENIWIWETGENTYYYDIGEIVRFRVESEEWHDQRPTGPDRVEAQTASENKPP 175
Query: 175 MVINGSIDYDGLGPVSWW 192
I S+ +GLG VSWW
Sbjct: 176 YSIRASMMMEGLGLVSWW 193
>gi|429854331|gb|ELA29351.1| DNA-directed RNA polymerase iii polypeptide [Colletotrichum
gloeosporioides Nara gc5]
Length = 197
Score = 112 bits (280), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 61/196 (31%), Positives = 98/196 (50%), Gaps = 9/196 (4%)
Query: 1 MFYLSKIEHTLRLPPHLLRLPLNEAIKLELENVFLDKVIANLGLCISIYDIKEIEGGFVY 60
MF L+KI + + P R AI+ + + +KVI +GLCI +YD+ G +
Sbjct: 1 MFILTKIADLVEIAPEDFRKKSGTAIEDNINAKYANKVIQKIGLCICLYDLLWTSEGLIG 60
Query: 61 PGEGASTHTVKFRLVVFRPFVGEIIAAKLKESDANGLRLSLGFFEDIYVPSHLLPSPSRS 120
G G V+FR++VFRPF GE++ +++ S G+ L FF+DI++P LP
Sbjct: 61 HGTGLVNVNVEFRMIVFRPFKGEVMIGRIRSSTPAGINLRTDFFDDIFIPFDELP----- 115
Query: 121 EPDPYGRYEVKWIWEFGDTKYVIDGLDEIKFRVLSVNY----PSIPIEQAEGSKPFAPMV 176
E Y E WIW + D + ++F+V+ + P+ P + E + P P
Sbjct: 116 EGAEYNHSEQLWIWNIEGDRLFYDNHEMVRFQVIDEEWHDQTPAGPSQGEEAAPPKPPYK 175
Query: 177 INGSIDYDGLGPVSWW 192
+ G++ +GLG WW
Sbjct: 176 VKGTMAMEGLGVCLWW 191
>gi|366994608|ref|XP_003677068.1| hypothetical protein NCAS_0F02290 [Naumovozyma castellii CBS 4309]
gi|342302936|emb|CCC70713.1| hypothetical protein NCAS_0F02290 [Naumovozyma castellii CBS 4309]
Length = 222
Score = 112 bits (280), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 73/227 (32%), Positives = 113/227 (49%), Gaps = 41/227 (18%)
Query: 1 MFYLSKIEHTLRLPPHLLRLPLNEAIKLELENVFLDKVIANLGLCISIYDIKEIEGGFVY 60
MF LSKI +R+PP +I EL N + DK++ ++GLCI+IYDI E++ G +
Sbjct: 1 MFILSKISDLVRIPPDQFHRDTISSITHELNNKYADKIVPHIGLCITIYDILEVDEGQLK 60
Query: 61 PGEGASTHTVKFRLVVFRPFVGEIIAAKLKESDANGLRLS-LGFFEDIYVPSHLLPSPSR 119
PG+GAS V FR ++F+PFVGEI+ + + A G+++S LG F D+++P +L
Sbjct: 61 PGDGASYINVTFRALIFKPFVGEIVTGWISKCTAEGIKVSMLGMFNDVFIPQKMLFEGCY 120
Query: 120 SEPDPYGRYEVKWIWEFG-DTKYVIDGLDEIKFRVLSVNY----PSIP------------ 162
P+ + W+W +TK D ++I+FR+ + P P
Sbjct: 121 YSPE-----DSAWVWPMDEETKLYFDVNEKIRFRIEQEVFVDVKPKSPKERELEQQQLQR 175
Query: 163 -----------------IEQAEGSKPFAPMVINGSIDYDGLGPVSWW 192
+E + KP A ++ GS DG+G VSWW
Sbjct: 176 QQEENGKEGEDKEKDNEVEIIKIEKPPAYALL-GSCQTDGMGLVSWW 221
>gi|358379479|gb|EHK17159.1| hypothetical protein TRIVIDRAFT_66115 [Trichoderma virens Gv29-8]
Length = 193
Score = 112 bits (280), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 62/196 (31%), Positives = 101/196 (51%), Gaps = 10/196 (5%)
Query: 1 MFYLSKIEHTLRLPPHLLRLPLNEAIKLELENVFLDKVIANLGLCISIYDIKEIEGGFVY 60
MF L+K +++ P AI+ + + +KV+ +GLCIS+YD+ G +
Sbjct: 1 MFILTKFSDLVQISPEDFSKHSIVAIEDNINAKYANKVVQKIGLCISLYDVLWTSEGLIG 60
Query: 61 PGEGASTHTVKFRLVVFRPFVGEIIAAKLKESDANGLRLSLGFFEDIYVPSHLLPSPSRS 120
G G V+FR++VFRPF GE++ +++ S +G+ L FF+DI++P LP +
Sbjct: 61 HGTGLVNVNVEFRMIVFRPFKGEVMLGRIRSSTPSGIHLRTDFFDDIFIPYEELPQGAE- 119
Query: 121 EPDPYGRYEVKWIWEFGDTKYVIDGLDEIKFRVLSVNY----PSIPIEQAEGSKPFAPMV 176
Y E WIW F + + D + ++F+V+ + P+ P QAE + P
Sbjct: 120 ----YNHSEQIWIWNFDEERLFYDNHEMVRFQVIDEEWHDQTPAGPT-QAEDTPAKTPYK 174
Query: 177 INGSIDYDGLGPVSWW 192
I GS+ +GLG WW
Sbjct: 175 IKGSMAAEGLGVCLWW 190
>gi|363756270|ref|XP_003648351.1| hypothetical protein Ecym_8251 [Eremothecium cymbalariae
DBVPG#7215]
gi|356891551|gb|AET41534.1| Hypothetical protein Ecym_8251 [Eremothecium cymbalariae
DBVPG#7215]
Length = 210
Score = 112 bits (279), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 72/214 (33%), Positives = 108/214 (50%), Gaps = 27/214 (12%)
Query: 1 MFYLSKIEHTLRLPPHLLRLPLNEAIKLELENVFLDKVIANLGLCISIYDIKEIEGGFVY 60
MF L+KI +R+PP AI +L N + +KVI ++GLCI++YD+ + G +
Sbjct: 1 MFILTKISDLVRIPPDQFHRDTASAINHQLNNKYANKVIPHVGLCITVYDLLAADEGQLK 60
Query: 61 PGEGASTHTVKFRLVVFRPFVGEIIAAKLKESDANGLRLS-LGFFEDIYVPSHLLPSPSR 119
PG+GAS V FR +VF+P VGEI+ + + G+++S LG F+DI++P ++L
Sbjct: 61 PGDGASYINVTFRALVFKPLVGEIVTGWISQCTVEGIKVSLLGLFDDIFIPENMLFEGCY 120
Query: 120 SEPDPYGRYEVKWIWEF-GDTKYVIDGLDEIKFRVLSVNY----PSIPIEQ--------- 165
D W+W DTK D ++I+FR+ + P P E+
Sbjct: 121 FSVDDNA-----WVWPMDSDTKLYFDINEKIRFRIEQEVFVDVKPKSPKEREIEEQLREK 175
Query: 166 -----AEGSKPFAP--MVINGSIDYDGLGPVSWW 192
AE K P + GS DG+G VSWW
Sbjct: 176 EELIAAEQRKLQVPPTYALLGSCQTDGMGLVSWW 209
>gi|170101368|ref|XP_001881901.1| predicted protein [Laccaria bicolor S238N-H82]
gi|164643256|gb|EDR07509.1| predicted protein [Laccaria bicolor S238N-H82]
Length = 238
Score = 112 bits (279), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 71/222 (31%), Positives = 118/222 (53%), Gaps = 34/222 (15%)
Query: 1 MFYLSKIEHTLRLPPHLLRLPLNEAIKLELENVFLDKVIANLGLCISIYDIKEIEGGFVY 60
MF LS I+ TL + P +P +EA+ E+ + ++V+ +LGLC+ ++D+ + G V
Sbjct: 1 MFQLSIIKDTLSVHPSNFGVPPDEALIAEINKKYANRVLHDLGLCVCLFDLVQAGEGKVR 60
Query: 61 PGEGASTHTVKFRLVVFRPFVGEIIAAKLKESDANGLRLSLGFFEDIYVPSHLLPSPSRS 120
G+G + V FR+VVFRPF E+I AK+K SD +G+RL++GFF+D+++P+ LP PS
Sbjct: 61 YGDGFLWYKVVFRMVVFRPFTSEVIIAKVKSSDEDGIRLTIGFFDDMHIPAAYLPQPSAF 120
Query: 121 EPDPYGRYEVKWIW--------------------EFGDTKYVIDGLDEIKFRVLSVNY-- 158
+P+ + W+ ++ ID + ++ RV + +
Sbjct: 121 DPNERAHF---WLPSPPSPPSSPSHTTSAPSLLDSLVSSRMYIDQGEILRVRVEADQFCD 177
Query: 159 ----PSIPIE----QAEGSKPFAPMVINGSIDYDGLGPVSWW 192
P +E +A+G + AP + SI GLGPV+WW
Sbjct: 178 DEPGPQKFVEGVGAEAKG-RVRAPYNVVCSIAEQGLGPVAWW 218
>gi|156846922|ref|XP_001646347.1| hypothetical protein Kpol_1032p86 [Vanderwaltozyma polyspora DSM
70294]
gi|156117022|gb|EDO18489.1| hypothetical protein Kpol_1032p86 [Vanderwaltozyma polyspora DSM
70294]
Length = 222
Score = 112 bits (279), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 75/227 (33%), Positives = 116/227 (51%), Gaps = 41/227 (18%)
Query: 1 MFYLSKIEHTLRLPPHLLRLPLNEAIKLELENVFLDKVIANLGLCISIYDIKEIEGGFVY 60
MF L+KI+ +R+PP +I +L N F +KVI ++GLCI++YD+ E++ G +
Sbjct: 1 MFMLTKIKDLVRIPPDQFHRDSASSITHQLNNKFANKVIPHVGLCITVYDLLEVDEGQLK 60
Query: 61 PGEGASTHTVKFRLVVFRPFVGEIIAAKLKESDANGLRLSL-GFFEDIYVPSHLLPSPSR 119
PG+G+S V FR VVF+PFVGEI+ + + A G+++SL G +DI++P ++L
Sbjct: 61 PGDGSSYIYVTFRAVVFKPFVGEIVTGWITKCTAEGIKVSLSGMMDDIFIPKNML----- 115
Query: 120 SEPDPYGRYEVKWIWEFG-DTKYVIDGLDEIKFRV------------------------- 153
E Y E W+W +TK D ++I+FR+
Sbjct: 116 FEGCFYSVSENAWVWPMDEETKLYFDINEKIRFRIEQEIFVDVKPKSPKERELEEQAAAA 175
Query: 154 ------LSVNYPSIPIEQAEG--SKPFAPMVINGSIDYDGLGPVSWW 192
+S N + EQ + KP A ++ GS DG+G VSWW
Sbjct: 176 AAAAANVSSNAGASQNEQEKTVVEKPPAYALL-GSCQTDGMGLVSWW 221
>gi|444317941|ref|XP_004179628.1| hypothetical protein TBLA_0C03050 [Tetrapisispora blattae CBS 6284]
gi|387512669|emb|CCH60109.1| hypothetical protein TBLA_0C03050 [Tetrapisispora blattae CBS 6284]
Length = 205
Score = 112 bits (279), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 71/210 (33%), Positives = 110/210 (52%), Gaps = 24/210 (11%)
Query: 1 MFYLSKIEHTLRLPPHLLRLPLNEAIKLELENVFLDKVIANLGLCISIYDIKEIEGGFVY 60
MF LSKI +R+PP AI +L + +K++ +GLC++IYD+ E++ G +
Sbjct: 1 MFILSKISDLVRIPPDQFHRDSISAIMHQLNKRYANKIVPRIGLCVTIYDLLEVDQGQLK 60
Query: 61 PGEGASTHTVKFRLVVFRPFVGEIIAAKLKESDANGLRLSL-GFFEDIYVPSHLLPSPSR 119
PG+G S V FR ++F+PFVGEII + E G+++SL G F DI++P ++L
Sbjct: 61 PGDGGSYINVTFRAIIFKPFVGEIITGWIAECTNEGIKVSLSGAFSDIFIPKNMLFEGCY 120
Query: 120 SEPDPYGRYEVKWIWEFG-DTKYVIDGLDEIKFRVLSVNY----PSIPI----------- 163
P+ + W+W +TK D ++I+FRV + P P
Sbjct: 121 FAPE-----DNAWVWPMDEETKLYFDINEKIRFRVEKEVFLDVKPKSPKEKELEEQAQND 175
Query: 164 -EQAEGSKPFAPMVINGSIDYDGLGPVSWW 192
EQ + KP A ++ GS DG+G +SWW
Sbjct: 176 EEQPKVEKPPAYALL-GSCQTDGMGLISWW 204
>gi|281208326|gb|EFA82502.1| RNA polymerase III subunit [Polysphondylium pallidum PN500]
Length = 267
Score = 112 bits (279), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 71/221 (32%), Positives = 114/221 (51%), Gaps = 35/221 (15%)
Query: 1 MFYLSKIEHTLRLPPHLLRLPLNEAIKLELENVFLDKVIANLGLCISIYDIKEIEGGFVY 60
MF+L IE +R+PP+ + + I+ E+E + +KV+ + GL I++YDI +VY
Sbjct: 1 MFHLITIEDKVRIPPNQFNNEI-QTIEDEIEKKYSNKVVIDGGLFIALYDILGTGDAYVY 59
Query: 61 PGEGASTHTVKFRLVVFRPFVGEIIAAKLKESDANGLRLSLGFFEDIYVPSHLLPSPSRS 120
G+G S V+ RLVVF+PFVGEI+ +K+S + ++LSLGFF+DI V + LP+ S
Sbjct: 60 SGDGGSHLLVRCRLVVFKPFVGEILEGFIKKSTRDYMQLSLGFFDDIQVLALDLPTQSF- 118
Query: 121 EPDPYGRYEVKWIWEFGDTKYVIDGLDEIKFRVLSVNY------------PSIPIEQAEG 168
Y E W W++ D + + ++F++ +V + + P+ Q +
Sbjct: 119 ----YHDEEKLWYWDWNDNQLFFEDRGRVRFKIDTVEWNDAVSQPAPRPKSATPVNQMDA 174
Query: 169 S-----------------KPFAPMVINGSIDYDGLGPVSWW 192
S +PMV+ S+ GLG VSWW
Sbjct: 175 STLQEHNKRIKEEEEYLKNQKSPMVLKVSMRESGLGMVSWW 215
>gi|164656000|ref|XP_001729128.1| hypothetical protein MGL_3595 [Malassezia globosa CBS 7966]
gi|159103018|gb|EDP41914.1| hypothetical protein MGL_3595 [Malassezia globosa CBS 7966]
Length = 232
Score = 111 bits (278), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 70/228 (30%), Positives = 109/228 (47%), Gaps = 41/228 (17%)
Query: 1 MFYLSKIEHTLRLPPHLLRLPLNEAIKLELENVFLDKVIANLGLCISIYDIKEIEGGFVY 60
MF LS+IE +++ P P +AI ++ + +KV+ ++GLCI ++DI G V
Sbjct: 1 MFVLSEIEDVIKVEPRHFSRPSAKAIAEQINVKYANKVLQDIGLCICVHDILRSSEGRVR 60
Query: 61 PGEGASTHTVKFRLVVFRPFVGEIIAAKLKESDANGLRLSLGFFEDIYVPSHLLPSPSRS 120
G+G +TV FRLVVFRPF E++ ++ S + +R+S+GFF+DI++P H LP+PS
Sbjct: 61 WGDGCLYYTVVFRLVVFRPFTNEVLVGRISSSTSESIRISVGFFDDIFIPPHFLPTPS-- 118
Query: 121 EPDPYGRYEVKWIW---------------EFGDTKYVIDGLDEIKFRVLSVNY------P 159
+ E W W + + +D + I+F + S ++ P
Sbjct: 119 ---AFDYQEQAWFWLLDPASEAHVADPLLSAQEERMYLDIGEVIRFAIESDSFYDLEPGP 175
Query: 160 SI---------------PIEQAEGSKPFAPMVINGSIDYDGLGPVSWW 192
S+ E F+ IN SI GLG VSWW
Sbjct: 176 SLGEGMLGETPAVTSNFSGESGSRRSNFSSYKINASIAGQGLGLVSWW 223
>gi|225711736|gb|ACO11714.1| DNA-directed RNA polymerase III subunit RPC8 [Caligus
rogercresseyi]
Length = 217
Score = 111 bits (277), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 61/163 (37%), Positives = 97/163 (59%), Gaps = 10/163 (6%)
Query: 1 MFYLSKIEHTLRLPPHLLRLPLNEAIKLELENVFLDKVIANLGLCISIYDIKEIEGGFVY 60
MF LS+ + +RLP L L EA+ E+ ++V+ N+GL + ++DI EI F+
Sbjct: 1 MFVLSECKSLIRLPALHLGRNLPEALSEEINRKLSNRVVHNVGLAVCLFDILEIGESFLS 60
Query: 61 PGEGASTHTVKFRLVVFRPFVGEIIAAKLKESDANGLRLSLGFFEDIYVPSHLLPSPSRS 120
PG+GAS V FR++VFRPF+ E+I K+K +G+++SLGFFEDI++P L P R
Sbjct: 61 PGDGASHTRVNFRILVFRPFMEEVINGKIKSCSKDGVQVSLGFFEDIWIPPEALQHPYR- 119
Query: 121 EPDPYGRYEVKWIWEF----GDTKYV-IDGLDEIKFRVLSVNY 158
+ + W+WE+ G+ + +D +EI+FRV + +
Sbjct: 120 ----FDEADQVWVWEYPTEDGEKHDLFMDPGEEIRFRVTAETF 158
>gi|328790209|ref|XP_003251392.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC8-like [Apis
mellifera]
Length = 177
Score = 111 bits (277), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 70/205 (34%), Positives = 108/205 (52%), Gaps = 44/205 (21%)
Query: 1 MFYLSKIEHTLRLPPHLLRLPLNEAIKLELENVFLDKVIANLGLCISIYDIKEIEGGFVY 60
MF L++++ T+R+PP + LN+AI EL +KV N+GLCI+++DI +IE +++
Sbjct: 1 MFVLAELKDTVRIPPAEFKQKLNDAITDELNRKLANKVYLNVGLCIALHDITKIEESYIF 60
Query: 61 PGEGASTHTVKFRLVVFRPFVGEIIAAKLKESDANGLRLSLGFFEDIYVPSHLLPSPSRS 120
PG+GAS V F L+LGFFEDI +P H L PSR
Sbjct: 61 PGDGASHTKVIF--------------------------LTLGFFEDIVIPPHKLQHPSR- 93
Query: 121 EPDPYGRYEVKWIWEF--GDTK---YVIDGLDEIKFRVLSVNY-------PSIPIE-QAE 167
+ + E W+WE+ GD + +D + I+FRV+S + P+I E +
Sbjct: 94 ----FDQMEQAWVWEYDTGDGEKHDLFMDAGEIIRFRVVSETFTEALPTGPNISGETETS 149
Query: 168 GSKPFAPMVINGSIDYDGLGPVSWW 192
+K +P + G+ID GLG ++WW
Sbjct: 150 EAKNISPYTLGGAIDEPGLGLLTWW 174
>gi|295665246|ref|XP_002793174.1| DNA-directed RNA polymerase III subunit 22.9 kDa polypeptide
[Paracoccidioides sp. 'lutzii' Pb01]
gi|225679219|gb|EEH17503.1| conserved hypothetical protein [Paracoccidioides brasiliensis Pb03]
gi|226278088|gb|EEH33654.1| DNA-directed RNA polymerase III subunit 22.9 kDa polypeptide
[Paracoccidioides sp. 'lutzii' Pb01]
gi|226290932|gb|EEH46360.1| DNA-directed RNA polymerase III subunit 22.9 kDa polypeptide
[Paracoccidioides brasiliensis Pb18]
Length = 195
Score = 110 bits (276), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 72/201 (35%), Positives = 103/201 (51%), Gaps = 16/201 (7%)
Query: 1 MFYLSKIEHTLRLPPHLLRLPLNEAIKLELENVFLDKVIANLGLCISIYDIKEIEGGFVY 60
MF L+ I +++ P AI+ + + +KV+ N+GLCI YD+ E G +
Sbjct: 1 MFILTTISDLVQISPEDFSKLSAVAIEDNINEKYANKVVQNVGLCIGFYDLLEASDGLIG 60
Query: 61 PGEGASTHTVKFRLVVFRPFVGEIIAAKLKESDANGLRLSLGFFEDIYVPSHLLPSPSRS 120
G G VKFRL+VFRPF GEII K+ NG+R+S+ FF DI++P LL +R
Sbjct: 61 HGTGLVNVNVKFRLIVFRPFKGEIILGKITSGTENGIRISVEFFNDIFIPPSLLLDGAR- 119
Query: 121 EPDPYGRYEVKWIWEFGDTK-YVIDGLDEIKFRVLSVNY----PSIPIEQAEGS----KP 171
+ + WIW+ G+ + D + ++FRV + + P P Q S KP
Sbjct: 120 ----FDFTDQVWIWDNGEGAVFYFDIGETVRFRVEAEEWHDLVPDGPDAQQGESVVEKKP 175
Query: 172 FAPMVINGSIDYDGLGPVSWW 192
P I GS+ GLG VSWW
Sbjct: 176 --PYSIIGSMQIAGLGLVSWW 194
>gi|149065823|gb|EDM15696.1| polymerase (RNA) III (DNA directed) polypeptide H (predicted),
isoform CRA_c [Rattus norvegicus]
Length = 196
Score = 110 bits (276), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 67/187 (35%), Positives = 100/187 (53%), Gaps = 19/187 (10%)
Query: 20 LPLNEAIKLELENVFLDKVIANLGLCISIYDIKEIEGGFVYPGEGASTHTVKFRLVVFRP 79
L + + L L +V+ N+GLCI ++DI ++E +V+PG+GAS V FR VVF P
Sbjct: 12 LARSPTLGLSLSKWVSTEVVYNVGLCICLFDITKLEDAYVFPGDGASHTKVHFRYVVFHP 71
Query: 80 FVGEIIAAKLKESDANGLRLSLGFFEDIYVPSHLLPSPSRSEPDPYGRYEVKWIWEF--- 136
F+ EI+ K+K G+ +SLGFF+DI +P L P++ + E W+WE+
Sbjct: 72 FLDEILIGKIKGCSPEGVHVSLGFFDDILIPPESLQQPAK-----FDEAEQVWVWEYETE 126
Query: 137 -GDTKYVIDGLDEIKFRVLSVNY----PSIPIEQAEGS------KPFAPMVINGSIDYDG 185
G +D +EI+FRV+ ++ P+ P S K AP + GSI G
Sbjct: 127 EGAHDLYMDTGEEIRFRVVDESFVDTSPTGPSSAEAASSSEELPKKEAPYTLVGSISEPG 186
Query: 186 LGPVSWW 192
LG +SWW
Sbjct: 187 LGLLSWW 193
>gi|380491621|emb|CCF35188.1| RNA polymerase III subunit Rpc25 [Colletotrichum higginsianum]
Length = 197
Score = 110 bits (276), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 62/196 (31%), Positives = 98/196 (50%), Gaps = 9/196 (4%)
Query: 1 MFYLSKIEHTLRLPPHLLRLPLNEAIKLELENVFLDKVIANLGLCISIYDIKEIEGGFVY 60
MF L+KI + + P R AI+ + + +KVI +GLCI +YD+ G +
Sbjct: 1 MFILTKIADLVEIAPEDFRKKSVAAIEDNINAKYANKVIQKIGLCICLYDLLWTSEGLIG 60
Query: 61 PGEGASTHTVKFRLVVFRPFVGEIIAAKLKESDANGLRLSLGFFEDIYVPSHLLPSPSRS 120
G G V+FRLVVFRPF GE++ +++ S G+ L FF+DI++P LP
Sbjct: 61 HGTGLVNVNVEFRLVVFRPFKGEVMFGRIRSSTPAGINLRTDFFDDIFIPFDELP----- 115
Query: 121 EPDPYGRYEVKWIWEFGDTKYVIDGLDEIKFRVLSVNY----PSIPIEQAEGSKPFAPMV 176
E + E WIW + D + ++F+V+ + P+ P + E + P P
Sbjct: 116 EGAEFNHSEQLWIWNIEGDRLFYDNHEMVRFQVIDEEWHDQTPAGPSQGEEAAPPKPPYK 175
Query: 177 INGSIDYDGLGPVSWW 192
+ G++ +GLG WW
Sbjct: 176 VKGTMAMEGLGVCLWW 191
>gi|340515872|gb|EGR46123.1| predicted protein [Trichoderma reesei QM6a]
Length = 193
Score = 110 bits (275), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 61/195 (31%), Positives = 100/195 (51%), Gaps = 8/195 (4%)
Query: 1 MFYLSKIEHTLRLPPHLLRLPLNEAIKLELENVFLDKVIANLGLCISIYDIKEIEGGFVY 60
MF L+K +++ P AI+ + + +KV+ +GLCIS++D+ G +
Sbjct: 1 MFILTKFADLVQISPEDFSKHSIVAIEDNINAKYANKVVQKIGLCISLFDVLWTSEGLIG 60
Query: 61 PGEGASTHTVKFRLVVFRPFVGEIIAAKLKESDANGLRLSLGFFEDIYVPSHLLPSPSRS 120
G G V+FR++VFRPF GE++ +++ S +G+ L FF+DI+VP LP +
Sbjct: 61 HGTGLVNVNVEFRMIVFRPFKGEVMLGRIRSSTPSGIHLRTDFFDDIFVPYEELPQGAE- 119
Query: 121 EPDPYGRYEVKWIWEFGDTKYVIDGLDEIKFRVLSVNY-PSIPI--EQAEGSKPFAPMVI 177
Y E WIW F + + D + ++F+V+ + P+ QAE + P I
Sbjct: 120 ----YNHSEQIWIWNFDEERLFYDNHEMVRFQVIDEEWHDQTPVGPTQAEDTPAKTPYKI 175
Query: 178 NGSIDYDGLGPVSWW 192
GS+ +GLG WW
Sbjct: 176 KGSMAAEGLGVCLWW 190
>gi|195440052|ref|XP_002067873.1| GK12491 [Drosophila willistoni]
gi|194163958|gb|EDW78859.1| GK12491 [Drosophila willistoni]
Length = 245
Score = 110 bits (275), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 69/218 (31%), Positives = 110/218 (50%), Gaps = 31/218 (14%)
Query: 1 MFYLSKIEHTLRLPPHLLRLPLNEAIKLELENVFLDKVIANLGLCISIYDIKEIEGGFVY 60
MF L++++ +R+ P L L +A++ E++ +KV+ N+GLCI++ +I ++ +
Sbjct: 1 MFVLAELKDNVRIAPDHFNLKLIDAVRDEIDRKLANKVLLNVGLCIALKEIVSLKDSTIL 60
Query: 61 PGEGASTHTVKFRLVVFRPFVGEIIAAKLKESDANGLRLSLGFFEDIYVPSHLLPSPSRS 120
PG+GAS V FR VVFRP +G I+ K++ G+ ++LGFF+DI +P L PSR
Sbjct: 61 PGDGASHTEVLFRYVVFRPRLGTIMTGKIRNCSREGVHVTLGFFDDILIPQAALQHPSR- 119
Query: 121 EPDPYGRYEVKWIWEF-----GDTKYVIDGLDEIKFRVL-SVNYPSIPIE--QAEGSKPF 172
+ E W+WE+ +D + IKFRV + + PI +AE
Sbjct: 120 ----FDEAEQAWVWEYPLEDGAKHDLFMDVGEPIKFRVTREIFEETSPIGPPKAENQTAQ 175
Query: 173 ------------------APMVINGSIDYDGLGPVSWW 192
P I G+I+ GLG +SWW
Sbjct: 176 NASTSAAAAAAAGAQEVKTPYKIIGAINESGLGVLSWW 213
>gi|380018292|ref|XP_003693066.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC8-like
isoform 2 [Apis florea]
Length = 177
Score = 110 bits (275), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 70/205 (34%), Positives = 108/205 (52%), Gaps = 44/205 (21%)
Query: 1 MFYLSKIEHTLRLPPHLLRLPLNEAIKLELENVFLDKVIANLGLCISIYDIKEIEGGFVY 60
MF L++++ T+R+PP + LN+AI EL +KV N+GLCI+++DI +IE +++
Sbjct: 1 MFVLAELKDTVRIPPVEFKQKLNDAITDELNRKLANKVYLNVGLCIALHDITKIEESYIF 60
Query: 61 PGEGASTHTVKFRLVVFRPFVGEIIAAKLKESDANGLRLSLGFFEDIYVPSHLLPSPSRS 120
PG+GAS V F L+LGFFEDI +P H L PSR
Sbjct: 61 PGDGASHTKVIF--------------------------LTLGFFEDIVIPPHKLQHPSR- 93
Query: 121 EPDPYGRYEVKWIWEF--GDTK---YVIDGLDEIKFRVLSVNY-------PSIPIE-QAE 167
+ + E W+WE+ GD + +D + I+FRV+S + P+I E +
Sbjct: 94 ----FDQMEQAWVWEYDTGDGEKHDLFMDAGEIIRFRVVSETFTEALPTGPNISGETETS 149
Query: 168 GSKPFAPMVINGSIDYDGLGPVSWW 192
+K +P + G+ID GLG ++WW
Sbjct: 150 EAKNISPYTLGGAIDEPGLGLLTWW 174
>gi|358398243|gb|EHK47601.1| hypothetical protein TRIATDRAFT_83183 [Trichoderma atroviride IMI
206040]
Length = 193
Score = 110 bits (275), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 62/196 (31%), Positives = 100/196 (51%), Gaps = 10/196 (5%)
Query: 1 MFYLSKIEHTLRLPPHLLRLPLNEAIKLELENVFLDKVIANLGLCISIYDIKEIEGGFVY 60
MF L+K +++ P AI+ + + +KV+ +GLCIS+YD+ G +
Sbjct: 1 MFILTKFSDLVQISPEDFSKHSIVAIEDNINAKYANKVVQKIGLCISLYDVLWTSEGLIG 60
Query: 61 PGEGASTHTVKFRLVVFRPFVGEIIAAKLKESDANGLRLSLGFFEDIYVPSHLLPSPSRS 120
G G V+FR++VFRPF GE++ +++ S +G+ L FF+DI+VP LP +
Sbjct: 61 HGTGLVNVNVEFRMIVFRPFKGEVMLGRIRSSTPSGIHLRTDFFDDIFVPYEELPQGAE- 119
Query: 121 EPDPYGRYEVKWIWEFGDTKYVIDGLDEIKFRVLSVNY----PSIPIEQAEGSKPFAPMV 176
Y E WIW F + + D + ++F+V+ + P+ P AE + P
Sbjct: 120 ----YNHSEQIWIWNFDEERLFYDNHEMVRFQVIDEEWHDQTPAGPT-AAEDTPAKTPYK 174
Query: 177 INGSIDYDGLGPVSWW 192
I GS+ +GLG WW
Sbjct: 175 IKGSMAAEGLGVCLWW 190
>gi|147806412|emb|CAN76547.1| hypothetical protein VITISV_042492 [Vitis vinifera]
Length = 214
Score = 110 bits (274), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 49/74 (66%), Positives = 65/74 (87%)
Query: 1 MFYLSKIEHTLRLPPHLLRLPLNEAIKLELENVFLDKVIANLGLCISIYDIKEIEGGFVY 60
MF+LS IEHTLRLPPHLL L L++ I+ ELE+ FLDKVIA+LGLCIS+YDI+ I+G FV+
Sbjct: 102 MFFLSLIEHTLRLPPHLLDLSLDKTIQGELESQFLDKVIADLGLCISVYDIRSIDGDFVF 161
Query: 61 PGEGASTHTVKFRL 74
P +GAST+T++F++
Sbjct: 162 PADGASTYTIRFQV 175
Score = 42.4 bits (98), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 23/52 (44%), Positives = 33/52 (63%), Gaps = 4/52 (7%)
Query: 128 YEVKWIWEFGDTKYVIDGLDE--IKFRVLSVNYPSIPIEQAEGSKPFAPMVI 177
Y+++ I GD + DG I+F+V SV+Y +P+EQ + SKPF PMVI
Sbjct: 150 YDIRSID--GDFVFPADGASTYTIRFQVQSVSYSPVPVEQPKESKPFTPMVI 199
>gi|402223542|gb|EJU03606.1| polymerase III polypeptide H [Dacryopinax sp. DJM-731 SS1]
Length = 238
Score = 109 bits (273), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 58/153 (37%), Positives = 93/153 (60%), Gaps = 3/153 (1%)
Query: 1 MFYLSKIEHTLRLPPHLLRLPLNEAIKLELENVFLDKVIANLGLCISIYDIKEIEGGFVY 60
MF L++++ TL + P LP +EA+ E+ + D+V+ ++GLCI ++DI E G V
Sbjct: 1 MFVLARLKDTLPIHPSQFSLPGHEALTYEINRKYSDRVLHDVGLCIVLFDILECSEGRVR 60
Query: 61 PGEGASTHTVKFRLVVFRPFVGEIIAAKLKESDANGLRLSLGFFEDIYVPSHLLPSPSRS 120
G+G H V FR+VVFRPFVGE++ ++K G+++SLGFF+DI+VP+ LLP +
Sbjct: 61 FGDGCLWHKVTFRMVVFRPFVGEVLVGEVKGCAEEGVQVSLGFFDDIHVPTRLLPPHTTW 120
Query: 121 EPDPYGRYEVKWIWEFGDTKYVIDGLDEIKFRV 153
+P+ + W + D + +D E +F V
Sbjct: 121 DPEDQVFF---WAPQLSDGQDPLDIPKEERFTV 150
>gi|340992695|gb|EGS23250.1| DNA-directed RNA polymerase III subunit-like protein [Chaetomium
thermophilum var. thermophilum DSM 1495]
Length = 191
Score = 109 bits (272), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 69/202 (34%), Positives = 106/202 (52%), Gaps = 22/202 (10%)
Query: 1 MFYLSKIEHTLRLPPHLLRLPLNEAIKLELENVFLDKVIANLGLCISIYDIKEIEGGFVY 60
MF L+KI +++ P R A++ + + +KV+ +GLCI ++DI G +
Sbjct: 1 MFILTKIADLVQIAPEDFRKQSYAALEDNINAKYANKVLQKIGLCICLWDILWTSEGLIG 60
Query: 61 PGEGASTHTVKFRLVVFRPFVGEIIAAKLKESDANGLRLSLGFFEDIYVPSHLLPSPSRS 120
G+ V+FR+VVFRPF GE+I A++ + G+ L FF+DI+VP LP S
Sbjct: 61 QGD------VEFRMVVFRPFKGEVIVARISDQSPEGIHLVTDFFDDIFVPWTELPEGSEF 114
Query: 121 EPDPYGRYEVKWIWEFGDTKYVIDGLDEIKFRVLSVNY----PSIPIEQAEGSKPFA--- 173
EP E W+W+ D D + ++FRV++ ++ PS P E AEG++ A
Sbjct: 115 EP-----TENLWVWKEDDQVMYFDNNEMVRFRVIAEDWHDQTPSKPTE-AEGTEEAAQAN 168
Query: 174 ---PMVINGSIDYDGLGPVSWW 192
P I GS++ GLG WW
Sbjct: 169 YKPPYQIIGSMNGPGLGCCLWW 190
>gi|336368541|gb|EGN96884.1| hypothetical protein SERLA73DRAFT_185115 [Serpula lacrymans var.
lacrymans S7.3]
gi|336381332|gb|EGO22484.1| hypothetical protein SERLADRAFT_473379 [Serpula lacrymans var.
lacrymans S7.9]
Length = 222
Score = 108 bits (271), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 68/209 (32%), Positives = 109/209 (52%), Gaps = 17/209 (8%)
Query: 1 MFYLSKIEHTLRLPPHLLRLPLNEAIKLELENVFLDKVIANLGLCISIYDIKEIEGGFVY 60
MF LS I+ T+ + P + +A+ E+ + ++V+ ++G+CI ++D+ E G V
Sbjct: 1 MFVLSIIKDTIAILPANFGVLPEQALISEINKKYANRVLHDVGMCICVFDLTEASEGKVR 60
Query: 61 PGEGASTHTVKFRLVVFRPFVGEIIAAKLKESDANGLRLSLGFFEDIYVPSHLLPSPSRS 120
G+G + V FR+VVFRPF E+I AK+K SD +G+RLS+GFF+D+Y+P LP PS
Sbjct: 61 YGDGCLWYKVIFRMVVFRPFASEVILAKVKSSDEDGIRLSVGFFDDMYIPLSYLPQPSAL 120
Query: 121 E---------PDPYGRYEVKWIWEFGDTKYVIDGLDEIKFRVLSVNYPSI---PIEQAEG 168
+ PD + + + ID + ++ RV + + P + +EG
Sbjct: 121 DSNERAHFWLPDSEATTPHELLESITTDRMYIDQGEIVRVRVEADEFYDDEPGPPKASEG 180
Query: 169 SK-----PFAPMVINGSIDYDGLGPVSWW 192
AP + SI GLGP+ WW
Sbjct: 181 VAVKREVRRAPYSVICSIAEQGLGPIPWW 209
>gi|310793419|gb|EFQ28880.1| RNA polymerase III subunit Rpc25 [Glomerella graminicola M1.001]
Length = 197
Score = 108 bits (271), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 61/196 (31%), Positives = 97/196 (49%), Gaps = 9/196 (4%)
Query: 1 MFYLSKIEHTLRLPPHLLRLPLNEAIKLELENVFLDKVIANLGLCISIYDIKEIEGGFVY 60
MF L+KI + + P R AI+ + + +KVI +GLCI +YD+ G +
Sbjct: 1 MFILTKIADLVEIAPEDFRKKSVTAIEDNINAKYANKVIQKIGLCICLYDLLWTSEGLIG 60
Query: 61 PGEGASTHTVKFRLVVFRPFVGEIIAAKLKESDANGLRLSLGFFEDIYVPSHLLPSPSRS 120
G G V+FRL+VFRPF GE++ +++ S G+ L FF+DI++P LP
Sbjct: 61 HGTGLVNVNVEFRLIVFRPFKGEVMFGRIRSSTPAGINLRTDFFDDIFIPFDELP----- 115
Query: 121 EPDPYGRYEVKWIWEFGDTKYVIDGLDEIKFRVLSVNY----PSIPIEQAEGSKPFAPMV 176
E + E WIW + D + ++F+V+ + P P + E + P P
Sbjct: 116 EGAEFNHSEQLWIWNIEGDRLFYDNHEMVRFQVIDEEWHDQTPVGPSQGEEAAPPKPPYK 175
Query: 177 INGSIDYDGLGPVSWW 192
+ G++ +GLG WW
Sbjct: 176 VKGTMAMEGLGVCLWW 191
>gi|387219567|gb|AFJ69492.1| DNA-directed RNA polymerase III subunit RPC8 [Nannochloropsis
gaditana CCMP526]
Length = 206
Score = 108 bits (270), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 65/209 (31%), Positives = 102/209 (48%), Gaps = 62/209 (29%)
Query: 41 NLGLCISIYDIKEIEGGFVYPGEGASTHTVKFRLVVFRPFVGEIIAAKLKESDANGLRLS 100
N+GL + +YD +I ++YP +GA+ H V FRL+VFRPF+GE++ ++K+ NG+++S
Sbjct: 2 NVGLGVCLYDFVDIGDAYLYPSDGAAHHRVTFRLMVFRPFIGEVLVGRVKQCSENGIKIS 61
Query: 101 LGFFEDIYVPSHLLPSPSRSEPDPYGRYEVKWIWEFGD-------TKYVIDGLDEIKFRV 153
LGFF+DI+VPS+LL +PS +P E W+W + +Y ++ + I+FRV
Sbjct: 62 LGFFDDIFVPSYLLQTPSEFDP-----RENVWVWSYSSDEPGEPAVRYPMEVDEFIRFRV 116
Query: 154 LSVNY------------------------------PSIPIEQAEG--------------- 168
SVN+ P P + EG
Sbjct: 117 RSVNFTHTKYSGSGGSGAVGGLGNVATGPVGTVGNPVNPKVEVEGGGLGQVRRPRSDTLT 176
Query: 169 -----SKPFAPMVINGSIDYDGLGPVSWW 192
P PM + G+ + DGLG ++WW
Sbjct: 177 GDESVGGPLPPMQLLGTTNEDGLGMLAWW 205
>gi|255953671|ref|XP_002567588.1| Pc21g05420 [Penicillium chrysogenum Wisconsin 54-1255]
gi|211589299|emb|CAP95439.1| Pc21g05420 [Penicillium chrysogenum Wisconsin 54-1255]
Length = 185
Score = 108 bits (269), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 63/176 (35%), Positives = 93/176 (52%), Gaps = 15/176 (8%)
Query: 25 AIKLELENVFLDKVIANLGLCISIYDIKEIEGGFVYPGEGASTHTVKFRLVVFRPFVGEI 84
A++ + + +KVI +GLCIS YD+ E G + G G VKFR++VFRPF GEI
Sbjct: 17 ALEDNINAKYANKVIQKIGLCISFYDLLESSDGLIGHGTGLVNVNVKFRMIVFRPFKGEI 76
Query: 85 IAAKLKESDANGLRLSLGFFEDIYVPSHLLPSPSRSEPDPYGRYEVKWIWEF-GDTKYVI 143
+ K+ +G+++ L FF DI +P +L SR + E WIWE G T++
Sbjct: 77 MLGKISSGTEHGIKIGLEFFNDILIPPQMLMEKSR-----FDYAEQVWIWESEGGTEFFF 131
Query: 144 DGLDEIKFRVLSV-------NYPSIPIEQAEGSKPFAPMVINGSIDYDGLGPVSWW 192
D + ++FRV S N P + E + +P P I GS+ G GP++WW
Sbjct: 132 DVGEVVRFRVESEEWHDQIPNAPDVADETPQDRRP--PYSILGSMQMGGTGPITWW 185
>gi|389631563|ref|XP_003713434.1| DNA-directed RNA polymerase III polypeptide [Magnaporthe oryzae
70-15]
gi|351645767|gb|EHA53627.1| DNA-directed RNA polymerase III polypeptide [Magnaporthe oryzae
70-15]
Length = 213
Score = 107 bits (268), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 63/196 (32%), Positives = 101/196 (51%), Gaps = 9/196 (4%)
Query: 1 MFYLSKIEHTLRLPPHLLRLPLNEAIKLELENVFLDKVIANLGLCISIYDIKEIEGGFVY 60
MF L+KI +++ P +AI+ L + +KVI +GLCI +YD+ G +
Sbjct: 1 MFILTKIADLVQIKPAQFAKLSIDAIEDNLNEKYCNKVIQKVGLCICMYDLLWASEGLIG 60
Query: 61 PGEGASTHTVKFRLVVFRPFVGEIIAAKLKESDANGLRLSLGFFEDIYVPSHLLPSPSRS 120
G+G V+ RLV+FRPF GE++ ++ +G+ L FF+DI+VP LP +
Sbjct: 61 HGDGLVNVNVECRLVIFRPFKGEVLFGRISRCVKDGIHLRTDFFDDIFVPFDELPEGATF 120
Query: 121 EPDPYGRYEVKWIWEFGDTKYVIDGLDEIKFRVLSVNY----PSIPIEQAEGSKPFAPMV 176
+ D + W+W D + D + ++FRV S + P+ PIE +E + P
Sbjct: 121 DHD-----QSLWVWHVEDQEMYYDIHEMVRFRVSSEEWQDQTPTKPIEGSELPEKKPPYR 175
Query: 177 INGSIDYDGLGPVSWW 192
I G++ +GLG WW
Sbjct: 176 ITGTMKEEGLGVCLWW 191
>gi|452819811|gb|EME26863.1| DNA-directed RNA polymerase III subunit C25 isoform 2 [Galdieria
sulphuraria]
Length = 179
Score = 107 bits (268), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 60/186 (32%), Positives = 101/186 (54%), Gaps = 9/186 (4%)
Query: 1 MFYLSKIEHTLRLPPHLLRLPLNEAIKLELENVFLDKVIANLGLCISIYDIKEIEGGFVY 60
MF L+ +E TLR+ P LP +A+ + + ++++ +GLC+ ++D + E +++
Sbjct: 1 MFKLAVLEDTLRISPERFSLPKFDALCYAVHRKYSNRIVPGVGLCVGLWDWLKAEEDYLH 60
Query: 61 PGEGASTHTVKFRLVVFRPFVGEIIAAKLKESDANGLRLSLGFFEDIYVPSHLLPSPSRS 120
PG+G S V FRL+VF P VGE+I +++ S + GL +S+ FF +I++ L
Sbjct: 61 PGDGGSWTKVIFRLLVFEPQVGEVIIGRVEHSSSEGLYVSVDFFNNIFIDRLAL-----Q 115
Query: 121 EPDPYGRYEVKWIWEFGDTKYVIDGLDEIKFRVLSVNYPSIPIEQAEGSKPFAPMVINGS 180
EP + E WIW++ ID ++I+FRV+ V Y + S M + GS
Sbjct: 116 EPSVFDEEEQVWIWKYQGHDLHIDVGEDIRFRVVKVVYEN----SDRSSVSTGAMTVQGS 171
Query: 181 IDYDGL 186
I DG+
Sbjct: 172 IAGDGI 177
>gi|325091306|gb|EGC44616.1| DNA-directed RNA polymerase III [Ajellomyces capsulatus H88]
Length = 195
Score = 107 bits (268), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 68/201 (33%), Positives = 103/201 (51%), Gaps = 16/201 (7%)
Query: 1 MFYLSKIEHTLRLPPHLLRLPLNEAIKLELENVFLDKVIANLGLCISIYDIKEIEGGFVY 60
MF L+ + +++ P AI+ + + +KVI N+GLCI YD+ E G +
Sbjct: 1 MFILTTLSDLVQISPEDFSKLSAVAIEDNINEKYANKVIQNVGLCIGFYDLLESSDGLIG 60
Query: 61 PGEGASTHTVKFRLVVFRPFVGEIIAAKLKESDANGLRLSLGFFEDIYVPSHLLPSPSRS 120
G G VKFRL+VFRPF GE+I K+ NG+++S+ FF DI++P LL +R
Sbjct: 61 HGTGLVNVNVKFRLIVFRPFKGEVILGKITSGTENGIKISVEFFNDIFIPPSLLLDGAR- 119
Query: 121 EPDPYGRYEVKWIWEFGDTK-YVIDGLDEIKFRVLSVNY----PSIPIEQ----AEGSKP 171
+ + WIW+ G+ + D + ++FRV + + P P +Q KP
Sbjct: 120 ----FDFADQVWIWDNGEGAIFYFDIGETVRFRVEAEEWHDQVPDAPDDQDGVAVMDRKP 175
Query: 172 FAPMVINGSIDYDGLGPVSWW 192
P I GS+ GLG V+WW
Sbjct: 176 --PYSIIGSMQIAGLGLVAWW 194
>gi|326428134|gb|EGD73704.1| hypothetical protein PTSG_05411 [Salpingoeca sp. ATCC 50818]
Length = 203
Score = 107 bits (267), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 70/209 (33%), Positives = 107/209 (51%), Gaps = 25/209 (11%)
Query: 1 MFYLSKIEHTLRLPPHLLRLPLNEAIKLELENVFLDKVIANLGLCISIYDIKEIEGGFVY 60
MF + +I+ +RL P NEA+ E+ +F +KVI GL I ++D+ +I G ++
Sbjct: 1 MFCVIEIKDVIRLKPKRFATDRNEALAFEINKMFTNKVIHKRGLGICLFDLLDIGDGEIH 60
Query: 61 PGEGASTHTVKFRLVVFRPFVGEIIAAKLKE-SDANGLRLSLG-FFEDIYVPSHLLPSPS 118
P +GA+ V FRL++FRPFVGE++ ++ S +G+R+SLG FF+D+ +P P
Sbjct: 61 PSDGAAHVHVTFRLLMFRPFVGEVLKGTIRSCSRDSGIRVSLGTFFDDVVIP------PD 114
Query: 119 RSEPDP-YGRYEVKWIWEFG------DTKYVIDGLDEIKFRVLSVNYPSIPIEQAEGSKP 171
+ P + + WIW + D +Y ++ DEI F V + IP SK
Sbjct: 115 KLRPGSFFDEAKQTWIWRYSADDAVHDLEYSLE--DEIYFMVDEEIFTDIPPRTRLESKK 172
Query: 172 FA--------PMVINGSIDYDGLGPVSWW 192
A P +I D DGLG WW
Sbjct: 173 AAEETAAQQVPYLIKAKADLDGLGMCEWW 201
>gi|225561861|gb|EEH10141.1| DNA-directed RNA polymerase III 25 kD polypeptide [Ajellomyces
capsulatus G186AR]
Length = 195
Score = 107 bits (267), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 68/201 (33%), Positives = 103/201 (51%), Gaps = 16/201 (7%)
Query: 1 MFYLSKIEHTLRLPPHLLRLPLNEAIKLELENVFLDKVIANLGLCISIYDIKEIEGGFVY 60
MF L+ + +++ P AI+ + + +KVI N+GLCI YD+ E G +
Sbjct: 1 MFILTTLSDLVQISPEDFSKLSAVAIEDNINEKYANKVIQNVGLCIGFYDLLESSDGLIG 60
Query: 61 PGEGASTHTVKFRLVVFRPFVGEIIAAKLKESDANGLRLSLGFFEDIYVPSHLLPSPSRS 120
G G VKFRL+VFRPF GE+I K+ NG+++S+ FF DI++P LL +R
Sbjct: 61 HGTGLVNVNVKFRLIVFRPFKGEVILGKITSGTENGIKISVEFFNDIFIPPSLLLDGAR- 119
Query: 121 EPDPYGRYEVKWIWEFGDTK-YVIDGLDEIKFRVLSVNY----PSIPIEQ----AEGSKP 171
+ + WIW+ G+ + D + ++FRV + + P P +Q KP
Sbjct: 120 ----FDFADQVWIWDNGEGAIFYFDIGETVRFRVEAEEWHDQVPDAPDDQDGVAVMERKP 175
Query: 172 FAPMVINGSIDYDGLGPVSWW 192
P I GS+ GLG V+WW
Sbjct: 176 --PYSIIGSMQIAGLGLVAWW 194
>gi|149065821|gb|EDM15694.1| polymerase (RNA) III (DNA directed) polypeptide H (predicted),
isoform CRA_b [Rattus norvegicus]
Length = 177
Score = 107 bits (266), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 54/120 (45%), Positives = 77/120 (64%), Gaps = 4/120 (3%)
Query: 1 MFYLSKIEHTLRLPPHLLRLPLNEAIKLELENVFLDKVIANLGLCISIYDIKEIEGGFVY 60
MF L ++ T+R+PP LN++I EL +KV+ N+GLCI ++DI ++E +V+
Sbjct: 1 MFVLVEMVDTVRIPPWQFERKLNDSIAEELNKKLANKVVYNVGLCICLFDITKLEDAYVF 60
Query: 61 PGEGASTHTVKFRLVVFRPFVGEIIAAKLKESDANGLRLSLGFFEDIYVP----SHLLPS 116
PG+GAS V FR VVF PF+ EI+ K+K G+ +SLGFF+DI +P SHLL S
Sbjct: 61 PGDGASHTKVHFRYVVFHPFLDEILIGKIKGCSPEGVHVSLGFFDDILIPPELASHLLSS 120
>gi|393236166|gb|EJD43716.1| hypothetical protein AURDEDRAFT_145291 [Auricularia delicata
TFB-10046 SS5]
Length = 223
Score = 107 bits (266), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 71/214 (33%), Positives = 110/214 (51%), Gaps = 24/214 (11%)
Query: 1 MFYLSKIEHTLRLPPHLLRLPLNEAIKLELENVFLDKVIANLGLCISIYDIKEIEGGFVY 60
MF L+ I+ T+ L P +P +A+K EL + ++V+ ++GLC+ ++D+ G V
Sbjct: 1 MFQLAIIKDTIPLLPATFSIPAEQALKFELNKKYANRVLHDVGLCVCVFDLIHAGEGKVR 60
Query: 61 PGEGASTHTVKFRLVVFRPFVGEIIAAKLKESDANGLRLSLGFFEDIYVPSHLLPSPSRS 120
G+G H V FRLVVFRPF E++ A ++ S +G+RLS+ FF+D+++P LP PS
Sbjct: 61 YGDGCLWHKVTFRLVVFRPFKSEVLLATVQSSSEDGIRLSVEFFDDMFIPLEYLPYPSAF 120
Query: 121 EPDPYGRYEVKWIWEFGDTKYVIDGLDE-------------IKFRVLSVNY----PSIPI 163
+P+ + V E +T D LD ++ RV++ + P P
Sbjct: 121 DPNERCFFWVPSQAEI-ETPEWPDLLDSPITERQYIYKKEVLRVRVVTEKFWDDEPGPPK 179
Query: 164 EQAEGSKPFA-----PMVINGSIDYDGLGPVSWW 192
+G+ P A P VI SI GLG WW
Sbjct: 180 ANTDGA-PVAESRRSPYVITCSIAEQGLGVREWW 212
>gi|50290635|ref|XP_447750.1| hypothetical protein [Candida glabrata CBS 138]
gi|49527061|emb|CAG60697.1| unnamed protein product [Candida glabrata]
Length = 216
Score = 107 bits (266), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 72/221 (32%), Positives = 115/221 (52%), Gaps = 35/221 (15%)
Query: 1 MFYLSKIEHTLRLPPHLLRLPLNEAIKLELENVFLDKVIANLGLCISIYDIKEIEGGFVY 60
MF L+K++ +R+PP AI EL + +KV+ ++GL +S+YD+ E++ G +
Sbjct: 1 MFILTKLKDLVRIPPDQFHRDAVSAITHELNVKYSNKVVPHVGLSVSVYDLLEVDEGQLR 60
Query: 61 PGEGASTHTVKFRLVVFRPFVGEIIAAKLKESDANGLRLS-LGFFEDIYVPSHLLPSPSR 119
PG+GAS V FR VVF+PF GEI+ +K D G+++S +G F+DI++P +L S
Sbjct: 61 PGDGASYINVTFRCVVFKPFAGEILTGWIKRCDGEGIQVSMMGLFDDIFIPKKMLFEGSY 120
Query: 120 SEPDPYGRYEVKWIWEFG-DTKYVIDGLDEIKFRV-----LSVNYPS------------- 160
P+ + W+W +TK +D + I+FRV + V PS
Sbjct: 121 YSPE-----DGAWVWPMDEETKLYLDVNEMIRFRVEEEVFVDVKPPSPKELELERERELQ 175
Query: 161 ---------IPIEQAEGSKPFAPMVINGSIDYDGLGPVSWW 192
++++ KP A ++ GS DG+G VSWW
Sbjct: 176 LQEQQEHQQHQQQESKLEKPPAYALL-GSCQTDGMGLVSWW 215
>gi|297735499|emb|CBI17939.3| unnamed protein product [Vitis vinifera]
Length = 189
Score = 106 bits (265), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 54/75 (72%), Positives = 64/75 (85%), Gaps = 2/75 (2%)
Query: 7 IEHTLRLPPHLLRLPLNEAIKLELENVFLDKVIANLGLCISIYDIKEIEGGFVYPGEGAS 66
IE TLRLP L L LNE IK ELE+ FLDKVIANLGLC+S+YDI+ I+G FV+PG+GAS
Sbjct: 104 IELTLRLPS--LDLSLNETIKGELESQFLDKVIANLGLCVSVYDIRSIDGDFVFPGDGAS 161
Query: 67 THTVKFRLVVFRPFV 81
T+TV+FRLV+FRPFV
Sbjct: 162 TYTVEFRLVMFRPFV 176
>gi|169784414|ref|XP_001826668.1| DNA-directed RNA polymerase III subunit RPC8 [Aspergillus oryzae
RIB40]
gi|238508450|ref|XP_002385418.1| DNA-directed RNA polymerase III subunit 22.9 kDa, putative
[Aspergillus flavus NRRL3357]
gi|83775415|dbj|BAE65535.1| unnamed protein product [Aspergillus oryzae RIB40]
gi|220688937|gb|EED45289.1| DNA-directed RNA polymerase III subunit 22.9 kDa, putative
[Aspergillus flavus NRRL3357]
gi|391864250|gb|EIT73546.1| DNA-directed RNA polymerase subunit E' [Aspergillus oryzae 3.042]
Length = 193
Score = 106 bits (265), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 68/200 (34%), Positives = 102/200 (51%), Gaps = 15/200 (7%)
Query: 1 MFYLSKIEHTLRLPPHLLRLPLNEAIKLELENVFLDKVIANLGLCISIYDIKEIEGGFVY 60
MF L+ + +++ P + AI+ + + +KVI +GLCI YD+ E G +
Sbjct: 1 MFILTTLSDLIQISPEDFSKYSSVAIEDNINEKYANKVIQKVGLCIGFYDLLESSDGLIG 60
Query: 61 PGEGASTHTVKFRLVVFRPFVGEIIAAKLKESDANGLRLSLGFFEDIYVPSHLLPSPSRS 120
G G VKFRL+VFRPF GEI+ K+ + +G+++ + FF DI VP +LL +R
Sbjct: 61 HGTGLVNVNVKFRLIVFRPFKGEIMLGKISSATEHGIKIGVEFFNDILVPPNLLLDGAR- 119
Query: 121 EPDPYGRYEVKWIWEFGD-TKYVIDGLDEIKFRV-------LSVNYPSIPIEQAEGSKPF 172
+ + WIWE D + + D + ++FRV N P + A KP
Sbjct: 120 ----FDYADQVWIWENEDGSTFYFDIGEVVRFRVEIEEWHDQIPNAPDLGDAAAIERKP- 174
Query: 173 APMVINGSIDYDGLGPVSWW 192
P I GS+ GLGP+SWW
Sbjct: 175 -PYSIIGSMQMAGLGPISWW 193
>gi|428178891|gb|EKX47764.1| DNA-directed RNA polymerase III subunit RPC25 [Guillardia theta
CCMP2712]
Length = 187
Score = 106 bits (265), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 63/192 (32%), Positives = 98/192 (51%), Gaps = 6/192 (3%)
Query: 1 MFYLSKIEHTLRLPPHLLRLPLNEAIKLELENVFLDKVIANLGLCISIYDIKEIEGGFVY 60
MF L K++ + +P L P + A+ ++E + ++V+ GLC+ +Y+I+E+ G +Y
Sbjct: 1 MFVLVKMKDAVPIPASELSKPRSLAVSNQIEKKYSNRVLLGTGLCVCLYEIEELGEGLIY 60
Query: 61 PGEGASTHTVKFRLVVFRPFVGEIIAAKLKESDANGLRLSLGFFEDIYVPSHLLPSPSRS 120
P + A V F LVVFRPF+GE+I + S GL +SLGFF+DI+VP H + S
Sbjct: 61 PSDSAVHVRVTFSLVVFRPFIGEVITGSIHRSTPEGLWISLGFFQDIFVPPHFMQDGSE- 119
Query: 121 EPDPYGRYEVKWIWEFGDTKYVIDGLDEIKFRVLSVNYPSIPIEQAEGSKPFAPMVINGS 180
+ W+W+ ++D V N P+ ++ E A V+ S
Sbjct: 120 ----WDEEHQLWVWKSEHGDAMLDPAFGSPRFVDRKNTPARTGQEQEQEDEPAFQVM-AS 174
Query: 181 IDYDGLGPVSWW 192
I DGLG WW
Sbjct: 175 IKDDGLGLAIWW 186
>gi|154308992|ref|XP_001553831.1| hypothetical protein BC1G_08024 [Botryotinia fuckeliana B05.10]
Length = 196
Score = 106 bits (265), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 64/200 (32%), Positives = 103/200 (51%), Gaps = 13/200 (6%)
Query: 1 MFYLSKIEHTLRLPPHLLRLPLNEAIKLELENVFLDKVIANLGLCISIYDIKEIEGGFVY 60
MF L+KI +++ P L ++AI+ + + +KVI +GLCI YD+ G +
Sbjct: 1 MFILTKIADLVQIAPQDLGKNASQAIEDNINLKYANKVIQKIGLCICFYDLLSASEGLIG 60
Query: 61 PGEGASTHTVKFRLVVFRPFVGEIIAAKLKESDANGLRLSLGFFEDIYVPSHLLPSPSRS 120
G+G V+FR+VVFRPF EI+ ++ S +G+R+ FF++I+VP+ +LP S
Sbjct: 61 HGDGLVNVNVEFRIVVFRPFKFEIMTGRISSSIESGIRVRTHFFDEIFVPAKMLPEGSH- 119
Query: 121 EPDPYGRYEVKWIWEFGD-TKYVIDGLDEIKFRVLSVNY-------PSIPIEQAEGSKPF 172
+ E ++WE + T+ D + ++FRV S + P + E
Sbjct: 120 ----FNHNEQVFVWETEEGTQLYFDNQETVRFRVDSEQWNDQAPLGPEKQDDSEESRVIE 175
Query: 173 APMVINGSIDYDGLGPVSWW 192
AP I S++ GLGP WW
Sbjct: 176 APYKIVASMEEVGLGPCLWW 195
>gi|358372760|dbj|GAA89362.1| DNA-directed rna polymerase III 25 kD polypeptide [Aspergillus
kawachii IFO 4308]
Length = 193
Score = 106 bits (265), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 68/200 (34%), Positives = 101/200 (50%), Gaps = 15/200 (7%)
Query: 1 MFYLSKIEHTLRLPPHLLRLPLNEAIKLELENVFLDKVIANLGLCISIYDIKEIEGGFVY 60
MF L+ I +++ P A++ + + +KVI +GLCI YD+ E G +
Sbjct: 1 MFILTTISDLIQISPEDFSKYSAVALEDNINEKYANKVIQKIGLCIGFYDLLESSDGLIG 60
Query: 61 PGEGASTHTVKFRLVVFRPFVGEIIAAKLKESDANGLRLSLGFFEDIYVPSHLLPSPSRS 120
G G VKFRL+VFRPF GEI+ K+ + +G+++++ FF DI VP LL +R
Sbjct: 61 HGTGLVNVNVKFRLIVFRPFKGEIMLGKISSATEHGIKVAVEFFNDILVPPDLLLDGAR- 119
Query: 121 EPDPYGRYEVKWIWEFGD-TKYVIDGLDEIKFRVLSV-------NYPSIPIEQAEGSKPF 172
+ + WIWE D + + D + ++FRV N P + A KP
Sbjct: 120 ----FDYADQVWIWENEDGSTFYFDVGEVVRFRVEMEEWHDQIPNAPDLGDAAAIERKP- 174
Query: 173 APMVINGSIDYDGLGPVSWW 192
P I GS+ GLGP+SWW
Sbjct: 175 -PYSIIGSMQMAGLGPISWW 193
>gi|402074868|gb|EJT70339.1| DNA-directed RNA polymerase III polypeptide [Gaeumannomyces
graminis var. tritici R3-111a-1]
Length = 209
Score = 106 bits (264), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 63/196 (32%), Positives = 97/196 (49%), Gaps = 9/196 (4%)
Query: 1 MFYLSKIEHTLRLPPHLLRLPLNEAIKLELENVFLDKVIANLGLCISIYDIKEIEGGFVY 60
MF L+KI +++ P +AI+ L + +KVI LGLCI +YD+ G +
Sbjct: 1 MFILTKIADLVQIKPAQFAKLSIDAIEDNLNEKYCNKVIQKLGLCICVYDLLWASEGLIG 60
Query: 61 PGEGASTHTVKFRLVVFRPFVGEIIAAKLKESDANGLRLSLGFFEDIYVPSHLLPSPSRS 120
G G V+ RLVVFRPF GE++ A++ +G+ L FF+DI++P LP
Sbjct: 61 HGTGVVNVNVECRLVVFRPFKGEVLFARISRCVKDGIHLRTDFFDDIFIPFDELP----- 115
Query: 121 EPDPYGRYEVKWIWEFGDTKYVIDGLDEIKFRVLSVNY----PSIPIEQAEGSKPFAPMV 176
E + + W+W D + ++FRV + + P+ PIE E + P
Sbjct: 116 EGATFNHEQSLWVWHVDGEDMYYDIHEVVRFRVSAEEWHDQTPTKPIEGNEPHEKKPPYR 175
Query: 177 INGSIDYDGLGPVSWW 192
I G++ +GLG WW
Sbjct: 176 ITGTMKEEGLGVCLWW 191
>gi|300176594|emb|CBK24259.2| unnamed protein product [Blastocystis hominis]
Length = 272
Score = 105 bits (263), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 60/165 (36%), Positives = 93/165 (56%), Gaps = 9/165 (5%)
Query: 1 MFYLSKIEHTLRLPPHLLRLPLNEAIKLELENVFLDKVIANLGLCISIYDIKEIEGGFVY 60
MF L I+ +R+ P + + E+ + +KVI GLCI+ YD EIE VY
Sbjct: 1 MFILLTIKDVIRIEPSQFGEEHVQTLIKEINRKYSNKVIPEYGLCIAFYDFVEIEDSKVY 60
Query: 61 PGEGASTHTVKFRLVVFRPFVGEIIAAKLKESDANGLRLSLGFFEDIYVPSHLLPSPSRS 120
PG+GA VKFR+++FRP GEII + S+ +G+R+SL F +D+++PS+ LP S
Sbjct: 61 PGDGACHTGVKFRMILFRPVEGEIIVGTVLSSNMSGIRVSLEFMDDVWIPSYNLPDVSVY 120
Query: 121 EPDPYGRYEVKWIWEFGD----TKYVIDGLDEIKFRVLSVNYPSI 161
DP R W+W + D + I+ + I+FRV+++ Y +
Sbjct: 121 --DPVRRI---WVWHYRDGDQQLDFDINTGEFIRFRVIAIQYNRV 160
>gi|347838548|emb|CCD53120.1| similar to DNA-directed RNA polymerase III 25 kDa polypeptide
[Botryotinia fuckeliana]
Length = 196
Score = 105 bits (263), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 63/200 (31%), Positives = 103/200 (51%), Gaps = 13/200 (6%)
Query: 1 MFYLSKIEHTLRLPPHLLRLPLNEAIKLELENVFLDKVIANLGLCISIYDIKEIEGGFVY 60
MF L+KI +++ P L ++AI+ + + +KVI +GLCI YD+ G +
Sbjct: 1 MFILTKIADLVQIAPQDLGKNASQAIEDNINLKYANKVIQKIGLCICFYDLLSASEGLIG 60
Query: 61 PGEGASTHTVKFRLVVFRPFVGEIIAAKLKESDANGLRLSLGFFEDIYVPSHLLPSPSRS 120
G+G V+FR+VVFRPF EI+ ++ S +G+R+ FF++I+VP+ +LP S
Sbjct: 61 HGDGLVNVNVEFRIVVFRPFKFEIMTGRISSSIESGIRVRTHFFDEIFVPAKMLPEGSH- 119
Query: 121 EPDPYGRYEVKWIWEFGD-TKYVIDGLDEIKFRVLSVNY-------PSIPIEQAEGSKPF 172
+ E ++WE + T+ D + ++FR+ S + P + E
Sbjct: 120 ----FNHNEQVFVWETEEGTQLYFDNQETVRFRIDSEQWNDQAPLGPEKQDDSEESRVIE 175
Query: 173 APMVINGSIDYDGLGPVSWW 192
AP I S++ GLGP WW
Sbjct: 176 APYKIVASMEEVGLGPCLWW 195
>gi|145253312|ref|XP_001398169.1| DNA-directed RNA polymerase III subunit RPC8 [Aspergillus niger CBS
513.88]
gi|134083732|emb|CAK42970.1| unnamed protein product [Aspergillus niger]
gi|350633207|gb|EHA21573.1| hypothetical protein ASPNIDRAFT_51264 [Aspergillus niger ATCC 1015]
Length = 193
Score = 105 bits (263), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 67/200 (33%), Positives = 101/200 (50%), Gaps = 15/200 (7%)
Query: 1 MFYLSKIEHTLRLPPHLLRLPLNEAIKLELENVFLDKVIANLGLCISIYDIKEIEGGFVY 60
MF L+ + +++ P A++ + + +KVI +GLCI YD+ E G +
Sbjct: 1 MFILTTVSDLIQISPEDFSKYSAVALEDNINEKYANKVIQKIGLCIGFYDLLESSDGLIG 60
Query: 61 PGEGASTHTVKFRLVVFRPFVGEIIAAKLKESDANGLRLSLGFFEDIYVPSHLLPSPSRS 120
G G VKFRL+VFRPF GEI+ K+ + +G+++++ FF DI VP LL +R
Sbjct: 61 HGTGLVNVNVKFRLIVFRPFKGEIMLGKISSATEHGIKVAVEFFNDILVPPDLLLDGAR- 119
Query: 121 EPDPYGRYEVKWIWEFGD-TKYVIDGLDEIKFRVLSV-------NYPSIPIEQAEGSKPF 172
+ + WIWE D + + D + ++FRV N P + A KP
Sbjct: 120 ----FDYADQVWIWENEDGSTFYFDVGEVVRFRVEMEEWHDQIPNAPDLGDAAAIERKP- 174
Query: 173 APMVINGSIDYDGLGPVSWW 192
P I GS+ GLGP+SWW
Sbjct: 175 -PYSIIGSMQMAGLGPISWW 193
>gi|408394367|gb|EKJ73575.1| hypothetical protein FPSE_06193 [Fusarium pseudograminearum CS3096]
Length = 193
Score = 105 bits (263), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 63/196 (32%), Positives = 97/196 (49%), Gaps = 10/196 (5%)
Query: 1 MFYLSKIEHTLRLPPHLLRLPLNEAIKLELENVFLDKVIANLGLCISIYDIKEIEGGFVY 60
MF L+KI +++ P +AI+ + + +KVI +GLCI +YD+ G +
Sbjct: 1 MFILTKIADLVQIAPEDFSKRSIDAIEDNINAKYSNKVIQKIGLCICLYDLHWASEGLIG 60
Query: 61 PGEGASTHTVKFRLVVFRPFVGEIIAAKLKESDANGLRLSLGFFEDIYVPSHLLPSPSRS 120
G G +FR+VVFRPF GE++ +++ S G+ L FF+DI+VP LP
Sbjct: 61 HGTGLVNVNAEFRMVVFRPFKGEVMIGRIRSSTPAGINLRTDFFDDIFVPFEELP----- 115
Query: 121 EPDPYGRYEVKWIWEFGDTKYVIDGLDEIKFRVLSVNY----PSIPIEQAEGSKPFAPMV 176
E Y E WIW + + D + ++F+V+ + P+ P Q E S P
Sbjct: 116 EGAEYNHSEQLWIWNLEEDRLFYDNHEMVRFQVIDEEWHDQAPAGPT-QPEDSPLKTPYR 174
Query: 177 INGSIDYDGLGPVSWW 192
I S+ +GLG WW
Sbjct: 175 IKASMAAEGLGVCLWW 190
>gi|330804580|ref|XP_003290271.1| hypothetical protein DICPUDRAFT_20776 [Dictyostelium purpureum]
gi|325079597|gb|EGC33189.1| hypothetical protein DICPUDRAFT_20776 [Dictyostelium purpureum]
Length = 234
Score = 105 bits (262), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 64/220 (29%), Positives = 113/220 (51%), Gaps = 34/220 (15%)
Query: 1 MFYLSKIEHTLRLPPHLLRLPLNEAIKLELENVFLDKVIANLGLCISIYDIKEIEGGFVY 60
MF+L IE +R+PP+ + + I+ E+E ++ KV+ + GL I++YDI +VY
Sbjct: 1 MFHLLTIEDRVRIPPNDFNNEV-QTIEDEIEKKYVSKVVLDGGLFIALYDILGTGDSYVY 59
Query: 61 PGEGASTHTVKFRLVVFRPFVGEIIAAKLKESDANGLRLSLGFFEDIYVPSHLLPSPSRS 120
G+GA+ V+FR+VVF+PF GEI+ +K+S + +++++GF+++IY+ LP PS
Sbjct: 60 SGDGAAHLMVRFRMVVFKPFKGEIMEGVIKKSTKDQVQITIGFYDEIYLNPIELPIPS-- 117
Query: 121 EPDPYGRYEVKWIWEFGDTKYVIDGLDEIKFRVLSVNY-PSIPI---------------- 163
+ E W WE+ D + + ++FRV + + P +
Sbjct: 118 ---SFSDEEKLWYWEWNDNQLFFENGGRVRFRVEQIEFNPEVSQPAPAPKNLNTDSMDSY 174
Query: 164 -------EQAEGSKPF----APMVINGSIDYDGLGPVSWW 192
QAE + +P+++ S+ GLG + WW
Sbjct: 175 TLREYKERQAENERLLQQVKSPLILKVSVKDSGLGMIEWW 214
>gi|296422646|ref|XP_002840870.1| hypothetical protein [Tuber melanosporum Mel28]
gi|295637096|emb|CAZ85061.1| unnamed protein product [Tuber melanosporum]
Length = 194
Score = 105 bits (262), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 54/153 (35%), Positives = 90/153 (58%), Gaps = 6/153 (3%)
Query: 1 MFYLSKIEHTLRLPPHLLRLPLNEAIKLELENVFLDKVIANLGLCISIYDIKEIEGGFVY 60
MF LSK L LPP P A++ ++ + +KV+ N+GLCIS+YD+ + G +
Sbjct: 1 MFILSKFTDLLHLPPPTFAHPTATALEDQINEKYANKVVHNIGLCISLYDLSSVSEGMIG 60
Query: 61 PGEGASTHTVKFRLVVFRPFVGEIIAAKLKESDANGLRLSLGFFEDIYVPSHLLPSPSRS 120
GA + V+FR++VFRPF GE++ ++ + A G+++ FF++++VP+ L SR
Sbjct: 61 QDGGAHVN-VEFRMIVFRPFKGEVLTGRISSATAAGVKVRTDFFDEVFVPAAALFEGSRF 119
Query: 121 EPDPYGRYEVKWIWEFGDTKYVIDGLDEIKFRV 153
+ G+ +V WIW D + +D + I+FRV
Sbjct: 120 D----GKEQV-WIWRNDDQDFYMDKNEVIRFRV 147
>gi|406607743|emb|CCH40848.1| DNA-directed RNA polymerase III subunit [Wickerhamomyces ciferrii]
Length = 206
Score = 105 bits (262), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 62/211 (29%), Positives = 104/211 (49%), Gaps = 25/211 (11%)
Query: 1 MFYLSKIEHTLRLPPHLLRLPLNEAIKLELENVFLDKVIANLGLCISIYDIKEIEGGFVY 60
MF LS++ +R+PP +A+ EL + +K+I NLG +S++D+ +I+ G +
Sbjct: 1 MFILSRLSDLIRIPPDQFNKEPKKALLNELHKKYSNKIIQNLGFVVSVWDLIKIDDGLLK 60
Query: 61 PGEGASTHTVKFRLVVFRPFVGEIIAAKLKESDANGLRLSLGFFEDIYVPSHLLPSPSRS 120
PG+G S R++VFRPFVGEI+ + + +GL++ + FF+DI++P L
Sbjct: 61 PGDGGSYIKCIVRVIVFRPFVGEILTGWIDKCTPDGLKIKMAFFDDIFIPKAAL-----F 115
Query: 121 EPDPYGRYEVKWIWEFGDTKYVIDGLDEIKFRVLSVNYPSIP------------------ 162
E + + WIW + +D ++I+FRV + ++
Sbjct: 116 EGCEFSLNDNAWIWNADGAQLYLDVNEKIRFRVEQEIFRNVKPKGPTSIDGTVITNDDDE 175
Query: 163 -IEQAEGSKPFAPMVINGSIDYDGLGPVSWW 192
+ KP + I GS DG+G VSWW
Sbjct: 176 DNDNENAEKP-SSYAILGSCQADGMGLVSWW 205
>gi|326477107|gb|EGE01117.1| DNA-directed RNA polymerase III polypeptide [Trichophyton equinum
CBS 127.97]
Length = 195
Score = 105 bits (261), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 67/199 (33%), Positives = 100/199 (50%), Gaps = 12/199 (6%)
Query: 1 MFYLSKIEHTLRLPPHLLRLPLNEAIKLELENVFLDKVIANLGLCISIYDIKEIEGGFVY 60
MF L+ I +++ P AI+ + + +KVI N+GLCI+ YD+ E G +
Sbjct: 1 MFILTTISDLVQISPEDFSKLSAVAIEDNINEKYANKVIQNVGLCIAFYDLLESSDGLIG 60
Query: 61 PGEGASTHTVKFRLVVFRPFVGEIIAAKLKESDANGLRLSLGFFEDIYVPSHLLPSPSRS 120
G G VKFR++VFRPF GE+I K+ G+++ + FF DI VP LL +R
Sbjct: 61 HGTGLVNVNVKFRMIVFRPFKGEVIIGKITNGTEQGIKIGVEFFNDIIVPPDLLLDGAR- 119
Query: 121 EPDPYGRYEVKWIWEFGDTK-YVIDGLDEIKFRVLSVNY----PSIPIEQAEGSKPFA-- 173
+ + WIW+ G+ + D + ++FRV + PS P Q + P
Sbjct: 120 ----FDMKDQVWIWDNGEGGIFYFDVGETVRFRVEQEEWHDQVPSAPDLQDGLATPDRKP 175
Query: 174 PMVINGSIDYDGLGPVSWW 192
P I GS+ GLG V+WW
Sbjct: 176 PYSIIGSMQVAGLGLVAWW 194
>gi|154283489|ref|XP_001542540.1| conserved hypothetical protein [Ajellomyces capsulatus NAm1]
gi|150410720|gb|EDN06108.1| conserved hypothetical protein [Ajellomyces capsulatus NAm1]
Length = 693
Score = 105 bits (261), Expect = 1e-20, Method: Composition-based stats.
Identities = 67/200 (33%), Positives = 102/200 (51%), Gaps = 16/200 (8%)
Query: 1 MFYLSKIEHTLRLPPHLLRLPLNEAIKLELENVFLDKVIANLGLCISIYDIKEIEGGFVY 60
MF L+ + +++ P AI+ + + +KVI N+GLCI YD+ E G +
Sbjct: 1 MFILTTLSDLVQISPEDFSKLSAVAIEDNINEKYANKVIQNVGLCIGFYDLLESSDGLIG 60
Query: 61 PGEGASTHTVKFRLVVFRPFVGEIIAAKLKESDANGLRLSLGFFEDIYVPSHLLPSPSRS 120
G G VKFRL+VFRPF GE+I K+ NG+++S+ FF DI++P LL +R
Sbjct: 61 HGTGLVNVNVKFRLIVFRPFKGEVILGKITSGTENGIKISVEFFNDIFIPPSLLLDGAR- 119
Query: 121 EPDPYGRYEVKWIWEFGDTK-YVIDGLDEIKFRVLSVNY----PSIPIEQ----AEGSKP 171
+ + WIW+ G+ + D + ++FRV + + P P +Q KP
Sbjct: 120 ----FDFADQVWIWDNGEGAIFYFDIGETVRFRVEAEEWHDQVPDAPDDQDGMAVMERKP 175
Query: 172 FAPMVINGSIDYDGLGPVSW 191
P I GS+ GLG V+W
Sbjct: 176 --PYSIIGSMQIAGLGLVAW 193
>gi|320165968|gb|EFW42867.1| predicted protein [Capsaspora owczarzaki ATCC 30864]
Length = 207
Score = 104 bits (260), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 58/211 (27%), Positives = 110/211 (52%), Gaps = 24/211 (11%)
Query: 1 MFYLSKIEHTLRLPPHLLRLPLNEAIKLELENVFLDKVIANLGLCISIYDIKEIEGGFVY 60
MF +S +T+R+ P AI E+ ++ +KV+ N+GLCI +YD+ E+ ++
Sbjct: 1 MFVVSTFRNTIRIHPADFAKDPQTAIADEINRLYANKVVLNIGLCICLYDLTEVGDAYIV 60
Query: 61 PGEGASTHTVKFRLVVFRPFVGEIIAAKLKESDANGLRLSLG-FFEDIYVPSHLLPSPSR 119
+G++ V FRL+VFRPF GE+++ ++ S +G+ +++G FF+D+++P+ L +
Sbjct: 61 SSDGSTRTEVVFRLIVFRPFEGEVVSGTIRRSIPSGIIVNIGTFFDDVFIPAENLQPGTI 120
Query: 120 SEPDPYGRYEVKWIWEFGDTKYVIDGLDEIKFRVLSVNYPSI-PIEQ------------- 165
PD +++W F + + ++ I+FRV++ + + P+
Sbjct: 121 FNPDLQ-----EFVWTFAEQELRMEADSRIRFRVVADRFSDLTPVHTEAPRFVDNDIAVT 175
Query: 166 ---AEGSKPFA-PMVINGSIDYDGLGPVSWW 192
A P+ P ++ GS GLG +WW
Sbjct: 176 RTVASAEDPYKRPYMVIGSASDSGLGLEAWW 206
>gi|315046208|ref|XP_003172479.1| DNA-directed RNA polymerase III polypeptide [Arthroderma gypseum
CBS 118893]
gi|311342865|gb|EFR02068.1| DNA-directed RNA polymerase III polypeptide [Arthroderma gypseum
CBS 118893]
Length = 195
Score = 104 bits (260), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 67/201 (33%), Positives = 101/201 (50%), Gaps = 16/201 (7%)
Query: 1 MFYLSKIEHTLRLPPHLLRLPLNEAIKLELENVFLDKVIANLGLCISIYDIKEIEGGFVY 60
MF L+ I +++ P AI+ + + +KVI N+GLC++ YD+ E G +
Sbjct: 1 MFILTTISDLVQIAPEDFSKLSAVAIEDNINEKYANKVIQNVGLCVAFYDLLESSDGLIG 60
Query: 61 PGEGASTHTVKFRLVVFRPFVGEIIAAKLKESDANGLRLSLGFFEDIYVPSHLLPSPSRS 120
G G VKFR++VFRPF GE+I K+ G+++ + FF DI VP +L +R
Sbjct: 61 HGTGLVNVNVKFRMIVFRPFKGEVIIGKITNGTEQGIKIGIEFFNDIIVPPDMLLDGAR- 119
Query: 121 EPDPYGRYEVKWIWEFGDTK-YVIDGLDEIKFRVLSVNY----PSIPIEQ----AEGSKP 171
+ + WIW+ G+ + D + ++FRV + PS P Q A KP
Sbjct: 120 ----FDMKDQVWIWDNGEGGIFYFDVGETVRFRVEQEEWHDQVPSAPDLQDGVAAPDRKP 175
Query: 172 FAPMVINGSIDYDGLGPVSWW 192
P I GS+ GLG V+WW
Sbjct: 176 --PYSIVGSMQVAGLGLVAWW 194
>gi|451992730|gb|EMD85209.1| hypothetical protein COCHEDRAFT_1229156 [Cochliobolus
heterostrophus C5]
Length = 213
Score = 104 bits (260), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 63/200 (31%), Positives = 103/200 (51%), Gaps = 14/200 (7%)
Query: 1 MFYLSKIEHTLRLPPHLLRLPLNEAIKLELENVFLDKVIANLGLCISIYDIKEIEGGFVY 60
MF L+ I+ +++ P P +AIK + + + +++I N+GLC+ ++D+ G +
Sbjct: 1 MFILTTIQDLIQIKPQDFEKPSAQAIKDVINDKYSNRIIPNIGLCLCMWDLLSASEGLIG 60
Query: 61 PGEGASTHTVKFRLVVFRPFVGEIIAAKLKESDANGLRLSLGFFEDIYVPSHLLPSPSRS 120
G G V+FR+ VFRPF GEII ++K S+ G+ + L F +I++P LP
Sbjct: 61 HGTGLVNVNVEFRMTVFRPFRGEIIYGRIKSSNQEGIIIDLEFTSEIFIPYQNLP----- 115
Query: 121 EPDPYGRYEVKWIWEFGDTKYVIDGLDEIKFRVLSVNY----PSIPIEQAEG----SKPF 172
E + + E W+W T+ D + + FRV + P+I + +G +P
Sbjct: 116 ENSSFSQAENVWVWNSEGTELFFDKGEPVLFRVEHEEWFDQRPTIVEKDEKGEIIEERPT 175
Query: 173 APMVINGSIDYDGLGPVSWW 192
A VI GS+ GLGP WW
Sbjct: 176 AWRVI-GSMAQPGLGPTLWW 194
>gi|326472028|gb|EGD96037.1| DNA-directed RNA polymerase III [Trichophyton tonsurans CBS 112818]
Length = 195
Score = 104 bits (259), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 67/199 (33%), Positives = 100/199 (50%), Gaps = 12/199 (6%)
Query: 1 MFYLSKIEHTLRLPPHLLRLPLNEAIKLELENVFLDKVIANLGLCISIYDIKEIEGGFVY 60
MF L+ I +++ P AI+ + + +KVI N+GLCI+ YD+ E G +
Sbjct: 1 MFILTTISDLVQILPEDFSKLSAVAIEDNINEKYANKVIQNVGLCIAFYDLLESSDGLIG 60
Query: 61 PGEGASTHTVKFRLVVFRPFVGEIIAAKLKESDANGLRLSLGFFEDIYVPSHLLPSPSRS 120
G G VKFR++VFRPF GE+I K+ G+++ + FF DI VP LL +R
Sbjct: 61 HGTGLVNVNVKFRMIVFRPFKGEVIIGKITNGTEQGIKIGVEFFNDIIVPPDLLLDGAR- 119
Query: 121 EPDPYGRYEVKWIWEFGDTK-YVIDGLDEIKFRVLSVNY----PSIPIEQAEGSKPFA-- 173
+ + WIW+ G+ + D + ++FRV + PS P Q + P
Sbjct: 120 ----FDMKDQVWIWDNGEGGIFYFDVGETVRFRVEQEEWHDQVPSAPDLQDGLATPDRKP 175
Query: 174 PMVINGSIDYDGLGPVSWW 192
P I GS+ GLG V+WW
Sbjct: 176 PYSIIGSMQVAGLGLVAWW 194
>gi|350396631|ref|XP_003484614.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC8-like
isoform 2 [Bombus impatiens]
Length = 177
Score = 103 bits (258), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 68/205 (33%), Positives = 105/205 (51%), Gaps = 44/205 (21%)
Query: 1 MFYLSKIEHTLRLPPHLLRLPLNEAIKLELENVFLDKVIANLGLCISIYDIKEIEGGFVY 60
MF L++++ T+R+PP + LN+AI EL +KV ++GLCI+++DI +IE +++
Sbjct: 1 MFVLAELKDTVRIPPWEFKRKLNDAITDELNRKLANKVYLDVGLCIALHDITKIEESYIF 60
Query: 61 PGEGASTHTVKFRLVVFRPFVGEIIAAKLKESDANGLRLSLGFFEDIYVPSHLLPSPSRS 120
PG+GAS V F L+LGFFEDI +P + L PSR
Sbjct: 61 PGDGASHTKVVF--------------------------LTLGFFEDIVIPPNKLQHPSR- 93
Query: 121 EPDPYGRYEVKWIWEF--GDTK---YVIDGLDEIKFRVLSVNY----PSIPIEQAEGSKP 171
+ + E W+WE+ GD + +D + I+FRV+S + P+ P E K
Sbjct: 94 ----FDQIEQAWVWEYDTGDGQKHDLFMDAGEIIRFRVISETFTEALPTGPNMSGETEKS 149
Query: 172 FA----PMVINGSIDYDGLGPVSWW 192
A P + +ID GLG ++WW
Sbjct: 150 EAKNTSPYTLGAAIDEPGLGLLTWW 174
>gi|148672604|gb|EDL04551.1| polymerase (RNA) III (DNA directed) polypeptide H, isoform CRA_e
[Mus musculus]
Length = 118
Score = 103 bits (258), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 50/113 (44%), Positives = 73/113 (64%)
Query: 1 MFYLSKIEHTLRLPPHLLRLPLNEAIKLELENVFLDKVIANLGLCISIYDIKEIEGGFVY 60
MF L ++ T+R+PP LN++I EL +KV+ N+GLCI ++DI ++E +V+
Sbjct: 1 MFVLVEMVDTVRIPPWQFERKLNDSIAEELNKKLANKVVYNVGLCICLFDITKLEDAYVF 60
Query: 61 PGEGASTHTVKFRLVVFRPFVGEIIAAKLKESDANGLRLSLGFFEDIYVPSHL 113
PG+GAS V FR VVF PF+ EI+ K+K G+ +SLGFF+DI +P L
Sbjct: 61 PGDGASHTKVHFRYVVFHPFLDEILIGKIKGCSPEGVHVSLGFFDDILIPPDL 113
>gi|346321249|gb|EGX90849.1| DNA-directed RNA polymerase III, putative [Cordyceps militaris
CM01]
Length = 192
Score = 103 bits (257), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 62/195 (31%), Positives = 96/195 (49%), Gaps = 8/195 (4%)
Query: 1 MFYLSKIEHTLRLPPHLLRLPLNEAIKLELENVFLDKVIANLGLCISIYDIKEIEGGFVY 60
MF L+KI +++ P AI+ + + +KVI +GLCI +YDI G +
Sbjct: 1 MFILTKISDLVQIAPEDFSKRSIIAIEDNINAKYSNKVIQKIGLCICLYDILWTSEGLIG 60
Query: 61 PGEGASTHTVKFRLVVFRPFVGEIIAAKLKESDANGLRLSLGFFEDIYVPSHLLPSPSRS 120
G G +FR++VFRPF GE++ +++ S G+ + FF+DI+VP LP +
Sbjct: 61 NGTGLVNVNAEFRMIVFRPFKGEVLIGRIRSSTPAGINVRTDFFDDIFVPFEELPPGAE- 119
Query: 121 EPDPYGRYEVKWIWEFGDTKYVIDGLDEIKFRVLSVNY-PSIPI--EQAEGSKPFAPMVI 177
Y E WIW + + D + ++ +V+ + PI QAE S P I
Sbjct: 120 ----YNHSEQLWIWSVDEQRLFYDTHEMVRLQVVDEEWHDQTPIGPTQAEDSPIKTPYRI 175
Query: 178 NGSIDYDGLGPVSWW 192
GS+ +GLG WW
Sbjct: 176 KGSMAKEGLGVCLWW 190
>gi|167535085|ref|XP_001749217.1| hypothetical protein [Monosiga brevicollis MX1]
gi|163772370|gb|EDQ86023.1| predicted protein [Monosiga brevicollis MX1]
Length = 1167
Score = 103 bits (257), Expect = 4e-20, Method: Composition-based stats.
Identities = 64/198 (32%), Positives = 107/198 (54%), Gaps = 13/198 (6%)
Query: 1 MFYLSKIEHTLRLPPHLLRLPLNEAIKLELENVFLDKVIANLGLCISIYDIKEIEGGFVY 60
MF ++ ++ ++L P +A+ E+ + +KVI LGL I ++DI EI+ V+
Sbjct: 1 MFRVATLKDIVQLKPKRFGENRVDALTHEINKKYANKVIYKLGLAICLFDIVEIKEAHVF 60
Query: 61 PGEGASTHTVKFRLVVFRPFVGEIIAAKLKESDANGLRLSLGFFEDIYVPSHLLPSPSRS 120
PG+G++ V+FRLVVFRPF GE++ ++ S A+ +++SL FF DIY+P+H +
Sbjct: 61 PGDGSAHFYVQFRLVVFRPFTGEVLKGAIESSTADHIKVSLKFFRDIYIPAHAM-----R 115
Query: 121 EPDPYGRYEVKWIWEFGDTKYVIDGLD-----EIKFRVLSVNYPS-IPI-EQAEGSKPFA 173
E + +WIW++ D L EI F+V+ + IP+ E + + P
Sbjct: 116 EGVVFDDGLQEWIWQYQDEDGASHQLKLAKGCEITFKVMEETFHDVIPVSEHKKQTTPDG 175
Query: 174 PMVIN-GSIDYDGLGPVS 190
MV + Y +GPV+
Sbjct: 176 LMVKKIEELPYVIMGPVA 193
>gi|451849514|gb|EMD62817.1| hypothetical protein COCSADRAFT_144644 [Cochliobolus sativus
ND90Pr]
Length = 214
Score = 103 bits (256), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 62/200 (31%), Positives = 102/200 (51%), Gaps = 14/200 (7%)
Query: 1 MFYLSKIEHTLRLPPHLLRLPLNEAIKLELENVFLDKVIANLGLCISIYDIKEIEGGFVY 60
MF L+ I+ +++ P P +AIK + + + +++I N+GLC+ ++D+ G +
Sbjct: 1 MFILTTIQDLIQIKPQDFEKPSAQAIKDVINDKYSNRIIPNIGLCLCMWDLLSASEGLIG 60
Query: 61 PGEGASTHTVKFRLVVFRPFVGEIIAAKLKESDANGLRLSLGFFEDIYVPSHLLPSPSRS 120
G G V+FR+ VFRPF GEII ++K S+ G+ + L F + ++P LP
Sbjct: 61 HGTGLVNVNVEFRMTVFRPFRGEIIYGRIKSSNQEGIIIDLEFTSETFIPYQNLP----- 115
Query: 121 EPDPYGRYEVKWIWEFGDTKYVIDGLDEIKFRVLSVNY----PSIPIEQAEG----SKPF 172
E + + E W+W T+ D + + FRV + P+I + +G +P
Sbjct: 116 ENSSFSQAENVWVWNSEGTELFFDKGEPVLFRVEHEEWFDQRPTIVEKDEKGEIIEERPT 175
Query: 173 APMVINGSIDYDGLGPVSWW 192
A VI GS+ GLGP WW
Sbjct: 176 AWRVI-GSMAQPGLGPTLWW 194
>gi|219117503|ref|XP_002179546.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
gi|217409437|gb|EEC49369.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
Length = 208
Score = 103 bits (256), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 61/195 (31%), Positives = 102/195 (52%), Gaps = 11/195 (5%)
Query: 1 MFYLSKIEHTLRLPPHLLRLPLNEAIKLELENVFLDKVIANLGLCISIY-DIKEIEGGFV 59
MF ++ + T+R+PP LL +P +A+ E++ + ++V+ ++GL + Y + + GF
Sbjct: 1 MFVVTTVFDTIRIPPLLLSMPTVQAVHSEIDQKYPNRVLMDVGLVVGRYGECARVGHGFC 60
Query: 60 YPGEGASTHTVKFRLVVFRPFVGEIIAAKLKESDANGLRLSLGFFEDIYVPSHLLPSPSR 119
G+G + H +FRL+VFRPFV E+ ++ +S A G+ +S+GFF DI++P++ + PS
Sbjct: 61 VSGDGGAHHECEFRLIVFRPFVEEVCLGRITKSTAEGIHVSIGFFVDIFIPAYWMLRPSH 120
Query: 120 SEPDPYGRYEVKWIWEFGDTKY--VIDGLDEIKFRVLSVNYPSIPIEQAEGSKPFAPMVI 177
Y WIW KY + ++ S+ S + E M I
Sbjct: 121 -----YEEKSGLWIW---TPKYDDDEEDAEDEADDAASIRRRSSSVGLDENQALPPSMHI 172
Query: 178 NGSIDYDGLGPVSWW 192
SI DGLG +WW
Sbjct: 173 VASICEDGLGLTTWW 187
>gi|66822507|ref|XP_644608.1| RNA polymerase III subunit [Dictyostelium discoideum AX4]
gi|66822575|ref|XP_644642.1| RNA polymerase III subunit [Dictyostelium discoideum AX4]
gi|122057759|sp|Q557J3.1|RPC8_DICDI RecName: Full=DNA-directed RNA polymerase III subunit rpc8;
Short=RNA polymerase III subunit C8; AltName:
Full=DNA-directed RNA polymerase III subunit H
gi|60472717|gb|EAL70667.1| RNA polymerase III subunit [Dictyostelium discoideum AX4]
gi|60472766|gb|EAL70716.1| RNA polymerase III subunit [Dictyostelium discoideum AX4]
Length = 252
Score = 102 bits (255), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 63/220 (28%), Positives = 108/220 (49%), Gaps = 34/220 (15%)
Query: 1 MFYLSKIEHTLRLPPHLLRLPLNEAIKLELENVFLDKVIANLGLCISIYDIKEIEGGFVY 60
MF+L IE +R+ P + + I+ E+E + KV+ N GL +++YDI +V+
Sbjct: 1 MFHLITIEDKVRIAPSQFNNEV-QTIEDEIEKKYTSKVVLNAGLFVALYDILGTGDSYVH 59
Query: 61 PGEGASTHTVKFRLVVFRPFVGEIIAAKLKESDANGLRLSLGFFEDIYVPSHLLPSPSRS 120
G+G + V+FR+VVF+PF GE++ +K+S +++SLGFF +IY+ LP+PS
Sbjct: 60 SGDGGAHLMVRFRMVVFKPFKGEVLEGVIKKSSRQSIQISLGFFHEIYLNPIELPNPSN- 118
Query: 121 EPDPYGRYEVKWIWEFGDTKYVIDGLDEIKFRVLSVNY--------PSIPIEQAEGSKPF 172
Y + E W WE+ + + + ++F++ V + PS E +
Sbjct: 119 ----YNQEEGLWYWEWNENQLFFEDGGRVRFKIDQVEFNPEISQPAPSPKNVNTEAMDSY 174
Query: 173 A--------------------PMVINGSIDYDGLGPVSWW 192
+ P+++ S+ GLG VSWW
Sbjct: 175 SLREYKEKQIENENLLKQVKSPLILKVSMREAGLGMVSWW 214
>gi|327305103|ref|XP_003237243.1| DNA-directed RNA polymerase III [Trichophyton rubrum CBS 118892]
gi|326460241|gb|EGD85694.1| DNA-directed RNA polymerase III [Trichophyton rubrum CBS 118892]
Length = 196
Score = 102 bits (254), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 67/200 (33%), Positives = 102/200 (51%), Gaps = 13/200 (6%)
Query: 1 MFYLSKIEHTLRLPPHLLRLPLNEAIKLELENVFLDKVIANLGLCISIYDIKEIEGGFVY 60
MF L+ I +++ P AI+ + + +KVI N+GLCI+ YD+ E G +
Sbjct: 1 MFILTTISDLVQISPEDFSKLSAVAIEDNINEKYANKVIQNVGLCIAFYDLLESSDGLIG 60
Query: 61 PGEG-ASTHTVKFRLVVFRPFVGEIIAAKLKESDANGLRLSLGFFEDIYVPSHLLPSPSR 119
G G + + VKFR++VFRPF GE+I K+ G+++ + FF DI VP LL +R
Sbjct: 61 HGTGLVNVNVVKFRMIVFRPFKGEVIIGKITNGTEQGIKIGVEFFNDIIVPPDLLLDGAR 120
Query: 120 SEPDPYGRYEVKWIWEFGDTK-YVIDGLDEIKFRVLSVNY----PSIPIEQAEGSKPFA- 173
+ + WIW+ G+ + D + ++FRV + PS P Q + P
Sbjct: 121 -----FDMKDQVWIWDNGEGGIFYFDVGETVRFRVEQEEWHDQVPSGPDLQDGLATPDRK 175
Query: 174 -PMVINGSIDYDGLGPVSWW 192
P I GS+ GLG V+WW
Sbjct: 176 PPYSIIGSMQVAGLGLVAWW 195
>gi|320040236|gb|EFW22169.1| DNA-directed RNA polymerase III polypeptide [Coccidioides posadasii
str. Silveira]
Length = 195
Score = 102 bits (254), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 66/201 (32%), Positives = 99/201 (49%), Gaps = 16/201 (7%)
Query: 1 MFYLSKIEHTLRLPPHLLRLPLNEAIKLELENVFLDKVIANLGLCISIYDIKEIEGGFVY 60
MF L+ I +++ P AI+ + + +KVI N+GLC+ YD E G +
Sbjct: 1 MFILTTISDLVQISPEDFSKLSAVAIEDNINEKYANKVIQNVGLCMGFYDFLESSDGLIG 60
Query: 61 PGEGASTHTVKFRLVVFRPFVGEIIAAKLKESDANGLRLSLGFFEDIYVPSHLLPSPSRS 120
G G VKFRL+VFRPF GE+I K+ G+++ L FF DI +P LL ++
Sbjct: 61 HGTGLVNVNVKFRLIVFRPFKGEVILGKITSGTEQGIKIGLEFFNDILIPPSLLLDGAK- 119
Query: 121 EPDPYGRYEVKWIWEFGD-TKYVIDGLDEIKFRVLSV-------NYPSIPI-EQAEGSKP 171
+ + W+W+ G+ + D + ++FRV + N P +P A KP
Sbjct: 120 ----FDYTDQVWVWDNGEGATFYFDIGETVRFRVEAEEWHDQIPNAPDMPDGSSAVERKP 175
Query: 172 FAPMVINGSIDYDGLGPVSWW 192
P I GS+ GLG V+WW
Sbjct: 176 --PYSIIGSMQIAGLGLVAWW 194
>gi|46122449|ref|XP_385778.1| hypothetical protein FG05602.1 [Gibberella zeae PH-1]
Length = 199
Score = 102 bits (253), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 64/202 (31%), Positives = 98/202 (48%), Gaps = 16/202 (7%)
Query: 1 MFYLSKIEHTLRLPPHLLRLPLNEAIKLELENVFLDKVIANLGLCISIYDIKEIEGGFVY 60
MF L+KI +++ P +AI+ + + +KVI +GLCI +YD+ G +
Sbjct: 1 MFILTKIADLVQIAPEDFSKRSIDAIEDNINAKYSNKVIQKIGLCICLYDLHWASEGLIG 60
Query: 61 PGEG------ASTHTVKFRLVVFRPFVGEIIAAKLKESDANGLRLSLGFFEDIYVPSHLL 114
G G T +FR+VVFRPF GE++ +++ S G+ L FF+DI+VP L
Sbjct: 61 HGTGLVNVNAKEYFTAEFRMVVFRPFKGEVMIGRIRSSTPAGINLRTDFFDDIFVPFEEL 120
Query: 115 PSPSRSEPDPYGRYEVKWIWEFGDTKYVIDGLDEIKFRVLSVNY----PSIPIEQAEGSK 170
P E Y E WIW + + D + ++F+V+ + P+ P Q E S
Sbjct: 121 P-----EGAEYNHSEQLWIWNLEEDRLFYDNHEMVRFQVIDEEWHDQAPAGPT-QPEDSP 174
Query: 171 PFAPMVINGSIDYDGLGPVSWW 192
P I S+ +GLG WW
Sbjct: 175 LKTPYRIKASMAAEGLGVCLWW 196
>gi|298709254|emb|CBJ31193.1| conserved unknown protein [Ectocarpus siliculosus]
Length = 279
Score = 102 bits (253), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 56/155 (36%), Positives = 88/155 (56%), Gaps = 24/155 (15%)
Query: 1 MFYLSKIEHTLRLPP------HLLRLPL-----------NEAIKLELENVFLDKVIANLG 43
MF L+ I+ T++ P LLR+ + + + ++E F D+VIAN+G
Sbjct: 1 MFVLATIKDTVKSPELVPGDCCLLRMTIWVAPSKFSGDALDVLTAQIEAKFADRVIANVG 60
Query: 44 LCISIYDIKEIEGGFVYPGEGASTHTVKFRLVVFRPFVGEIIAAKLKESDANGLRLSLGF 103
LCI ++ + I +VYP +GA+ + V+FR++VFRPFVGEI+ K+ G+++SL F
Sbjct: 61 LCICLHSYESIGDPYVYPSDGAAHYKVRFRMLVFRPFVGEILTGKVSSCTKQGIKVSLDF 120
Query: 104 FEDIYVPSHLLPSPSRSEPDPYGRYEVKWIWEFGD 138
FE+ +P LL SPS + R E W+W + D
Sbjct: 121 FENASIPKDLLQSPS-----VFARGE--WMWSYPD 148
>gi|291243947|ref|XP_002741859.1| PREDICTED: hypothetical protein isoform 2 [Saccoglossus
kowalevskii]
Length = 176
Score = 102 bits (253), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 68/206 (33%), Positives = 101/206 (49%), Gaps = 47/206 (22%)
Query: 1 MFYLSKIEHTLRLPPHLLRLPLNEAIKLELENVFLDKVIANLGLCISIYDIKEIEGGFVY 60
MF LS++ T+R+ P L LN+AI EL +KV+ N+GLCI+++DI ++E +++
Sbjct: 1 MFVLSEMTDTVRIKPWQFHLKLNDAIAEELNKKLANKVVHNVGLCIALHDITKLEDSYLF 60
Query: 61 PGEGASTHTVKFRLVVFRPFVGEIIAAKLKESDANGLRLSLGFFEDIYVPSHLLPSPSRS 120
PG+GAS HT F SLGFF+DI +P L PS+
Sbjct: 61 PGDGAS-HTKVF---------------------------SLGFFDDIVIPPDALQQPSK- 91
Query: 121 EPDPYGRYEVKWIWEF----GDTKYVIDGLDEIKFRVLSVNY-PSIPI---------EQA 166
+ E W+WE+ G +D ++I+FRV+ + + PI E
Sbjct: 92 ----FDEAEQVWVWEYETDEGTHDLFMDINEKIRFRVVDETFVDTTPIGPRTIVEVSEVT 147
Query: 167 EGSKPFAPMVINGSIDYDGLGPVSWW 192
E +P V+ GSI GLG +SWW
Sbjct: 148 ETDVKRSPYVLTGSISEPGLGLLSWW 173
>gi|392862351|gb|EAS37009.2| DNA-directed RNA polymerase, partial [Coccidioides immitis RS]
Length = 195
Score = 101 bits (252), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 63/200 (31%), Positives = 100/200 (50%), Gaps = 14/200 (7%)
Query: 1 MFYLSKIEHTLRLPPHLLRLPLNEAIKLELENVFLDKVIANLGLCISIYDIKEIEGGFVY 60
MF L+ I +++ P AI+ + + +KVI N+GLC+ YD+ E G +
Sbjct: 1 MFILTTISDLVQISPEDFSKLSAVAIEDNINEKYANKVIQNVGLCMGFYDLLESSDGLIG 60
Query: 61 PGEGASTHTVKFRLVVFRPFVGEIIAAKLKESDANGLRLSLGFFEDIYVPSHLLPSPSRS 120
G G VKFRL+VFRPF GE+I K+ G+++ L FF DI +P LL ++
Sbjct: 61 HGTGLVNVNVKFRLIVFRPFKGEVILGKITSGTEQGIKIGLEFFNDILIPPSLLLDGAK- 119
Query: 121 EPDPYGRYEVKWIWEFGD-TKYVIDGLDEIKFRVLSV-------NYPSIPIEQAEGSKPF 172
+ + W+W+ G+ + D + ++FRV + N P +P + +
Sbjct: 120 ----FDYTDQVWVWDNGEGATFYFDIGETVRFRVEAEEWHDQIPNAPDMPDGSSAVERKP 175
Query: 173 APMVINGSIDYDGLGPVSWW 192
A +I GS+ GLG V+WW
Sbjct: 176 AYSII-GSMQIAGLGLVAWW 194
>gi|452847392|gb|EME49324.1| hypothetical protein DOTSEDRAFT_163611 [Dothistroma septosporum
NZE10]
Length = 222
Score = 101 bits (252), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 65/211 (30%), Positives = 101/211 (47%), Gaps = 24/211 (11%)
Query: 1 MFYLSKIEHTLRLPPHLLRLPLNEAIKLELENVFLDKVIANLGLCISIYDIKEIEGGFVY 60
M+ L + +++ P P +I+ + + DKVI +GLC+ + + G +
Sbjct: 1 MYTLVTLADVVQIQPTEFSKPSMRSIEDYINAKYADKVIHKVGLCVGFHSLMSASEGLIG 60
Query: 61 PGEGASTHTVKFRLVVFRPFVGEIIAAKLKESDANGLRLSLGFFEDIYVPSHLLPSPSRS 120
G G V FRL+VFRPF GEII A + +D +GL LS FFEDI+VP +L+ +
Sbjct: 61 HGTGTVNVNVDFRLIVFRPFRGEIIRATITRADVSGLTLSADFFEDIHVPLNLMFEDTEW 120
Query: 121 EPDPYGRYEVKWIWEFGDTKYVIDGLDEIKFRVLSVNYPSIPIE---------------- 164
+ D G++ +IW+ D + G++E F V + E
Sbjct: 121 KQDDSGQW--AYIWKTDDGE---GGVNEFYFDVAETCMVRVEEEVWTDVSPDALRSQSYA 175
Query: 165 ---QAEGSKPFAPMVINGSIDYDGLGPVSWW 192
+ E +K AP +I GS+ + GLGP WW
Sbjct: 176 NEEEEENAKRMAPYLIRGSMMHAGLGPTLWW 206
>gi|353240426|emb|CCA72296.1| related to RPC25-DNA-direcred RNA polymerase III, 25 KD subunit
[Piriformospora indica DSM 11827]
Length = 227
Score = 101 bits (251), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 67/216 (31%), Positives = 109/216 (50%), Gaps = 29/216 (13%)
Query: 1 MFYLSKIEHTLRLPPHLLRLPLNEAIKLELENVFLDKVIANLGLCISIYDIKEIEGGFVY 60
MF L++I T+ L PH E I EL + ++++ ++GL IS++D+ + G V
Sbjct: 1 MFILTEIRDTVALQPHTFGFEPTEVIARELNKKYANRILQDIGLVISVFDLTKCGEGKVR 60
Query: 61 PGEGASTHTVKFRLVVFRPFVGEIIAAKLKESDANGLRLSLGFFEDIYVPSHLLPSPSRS 120
G+G + V+FRL VFRPF+ E++ K+K D +G+R++L FF+++++ LP+P
Sbjct: 61 YGDGCLWYKVEFRLAVFRPFISEVLIGKVKSQDEDGIRVTLTFFDEVHIDKSQLPAPC-- 118
Query: 121 EPDPYGRYEVKWIWEFG---DTKY--VIDG---------LDE-IKFRVLSVNYPSI---P 162
+ K+ W DTK ++D LD I+FRV + P
Sbjct: 119 ---AFDSSRQKFFWAAQMEPDTKRTELMDSPFQERLYIELDAPIRFRVEGDEFYDDEPGP 175
Query: 163 IEQAEGSK------PFAPMVINGSIDYDGLGPVSWW 192
+ A+G+K P I SI G+GP+ WW
Sbjct: 176 PKAAQGAKYDLTVSKRPPYRIFASIAGQGMGPLEWW 211
>gi|302902820|ref|XP_003048726.1| hypothetical protein NECHADRAFT_95472 [Nectria haematococca mpVI
77-13-4]
gi|256729660|gb|EEU43013.1| hypothetical protein NECHADRAFT_95472 [Nectria haematococca mpVI
77-13-4]
Length = 199
Score = 100 bits (250), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 63/204 (30%), Positives = 103/204 (50%), Gaps = 18/204 (8%)
Query: 1 MFYLSKIEHTLRLPPHLLRLPLNEAIKLELENVFLDKVIANLGLCISIYDIKEIEGGFVY 60
MF L+KI +++ P EAI+ + + +KVI +GLCI +YD++ G +
Sbjct: 1 MFILTKIADLVQIAPADFSKRSKEAIEDNINAKYSNKVIQKIGLCICLYDLQWASEGLIG 60
Query: 61 PGEG-------ASTHTVKFRLVVFRPFVGEIIAAKLKESDANGLRLSLGFFEDIYVPSHL 113
G G + V+FR+VVFRPF GE++ A++ S G+ L FF DI+V
Sbjct: 61 HGTGLVNVNADQAQSLVEFRMVVFRPFKGEVMMARISTSTPEGIYLQTDFFADIFVSYEY 120
Query: 114 LPSPSRSEPDPYGRYEVKWIWEFGDTKYVIDGLDE-IKFRVLSVNY----PSIPIEQAEG 168
LP + + W+W + + ++ + E ++F+V+ + P+ P +Q E
Sbjct: 121 LPPGAE-----FSHSHQLWVWNVDEEQRLLYEMHEMVRFQVIDEEWHDQAPAGPKKQEE- 174
Query: 169 SKPFAPMVINGSIDYDGLGPVSWW 192
++ AP I GS+ DGLG WW
Sbjct: 175 TEATAPYRIKGSMIADGLGLCLWW 198
>gi|396473245|ref|XP_003839299.1| similar to DNA-directed RNA polymerase III 25 kDa polypeptide
[Leptosphaeria maculans JN3]
gi|312215868|emb|CBX95820.1| similar to DNA-directed RNA polymerase III 25 kDa polypeptide
[Leptosphaeria maculans JN3]
Length = 213
Score = 100 bits (249), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 58/199 (29%), Positives = 101/199 (50%), Gaps = 12/199 (6%)
Query: 1 MFYLSKIEHTLRLPPHLLRLPLNEAIKLELENVFLDKVIANLGLCISIYDIKEIEGGFVY 60
MF L+ I+ +++ P + P ++AIK + + + +K++ +GLCI ++D+ G +
Sbjct: 1 MFILTTIQDLIQIAPQDFKKPSDQAIKDVVNDKYSNKIVPGIGLCICMWDLLSASEGLIG 60
Query: 61 PGEGASTHTVKFRLVVFRPFVGEIIAAKLKESDANGLRLSLGFFEDIYVPSHLLPSPSRS 120
G G ++FR+ VFRPF GEII ++K S G+ + L F +I++P L
Sbjct: 61 HGTGLVNVNIEFRMAVFRPFRGEIIYGRIKSSSPEGIIIDLDFTSEIFIPYQNL-----F 115
Query: 121 EPDPYGRYEVKWIWEFGDTKYVIDGLDEIKFRVLSVNY----PSIPIEQAEGS---KPFA 173
E + + E W+W T+ D + + FRV + P+I + +G+ +
Sbjct: 116 ENSSFDQAESVWVWNSDGTELFFDKGEPVLFRVEQEEWIDQRPTIVQKDEDGNVIEERGT 175
Query: 174 PMVINGSIDYDGLGPVSWW 192
I GS++ GLGP WW
Sbjct: 176 AWRIIGSMNQAGLGPTLWW 194
>gi|121719683|ref|XP_001276540.1| DNA-directed rna polymerase III 25 kD polypeptide [Aspergillus
clavatus NRRL 1]
gi|119404752|gb|EAW15114.1| DNA-directed rna polymerase III 25 kD polypeptide [Aspergillus
clavatus NRRL 1]
Length = 216
Score = 100 bits (248), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 64/176 (36%), Positives = 90/176 (51%), Gaps = 15/176 (8%)
Query: 25 AIKLELENVFLDKVIANLGLCISIYDIKEIEGGFVYPGEGASTHTVKFRLVVFRPFVGEI 84
AI+ + + +KVI +GLCI YD+ E G + G G VKFRL+VFRPF GEI
Sbjct: 48 AIEDNINEKYANKVIQKIGLCIGFYDLLESSDGLIGHGTGLVNVNVKFRLIVFRPFKGEI 107
Query: 85 IAAKLKESDANGLRLSLGFFEDIYVPSHLLPSPSRSEPDPYGRYEVKWIWEFGD-TKYVI 143
+ K+ + G+++ + FF DI VP LL +R + + W+WE D + +
Sbjct: 108 MLGKISSATQQGIKIGVEFFNDILVPPDLLLDGAR-----FDIADQVWVWENEDGSTFYF 162
Query: 144 DGLDEIKFRVLSV-------NYPSIPIEQAEGSKPFAPMVINGSIDYDGLGPVSWW 192
D + ++FRV N P + A KP P I GS+ GLGPVSWW
Sbjct: 163 DIGEVVRFRVEMEEWHDQIPNAPDLGDGAAIERKP--PYSIIGSMQMAGLGPVSWW 216
>gi|189203789|ref|XP_001938230.1| DNA-directed rna polymerase III 25 kD polypeptide [Pyrenophora
tritici-repentis Pt-1C-BFP]
gi|187985329|gb|EDU50817.1| DNA-directed rna polymerase III 25 kD polypeptide [Pyrenophora
tritici-repentis Pt-1C-BFP]
Length = 218
Score = 100 bits (248), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 62/200 (31%), Positives = 100/200 (50%), Gaps = 14/200 (7%)
Query: 1 MFYLSKIEHTLRLPPHLLRLPLNEAIKLELENVFLDKVIANLGLCISIYDIKEIEGGFVY 60
MF L+ I+ +++ P P +AIK + + +K+I N+GLC+ ++D+ G +
Sbjct: 1 MFILTTIQDLIQIKPEDFSRPSLQAIKDVVNEKYSNKIIPNIGLCLCMWDLLSATEGLIG 60
Query: 61 PGEGASTHTVKFRLVVFRPFVGEIIAAKLKESDANGLRLSLGFFEDIYVPSHLLPSPSRS 120
G G ++FR+ VFRPF GEII +K S+ G+ + L F ++++P LP
Sbjct: 61 HGTGLVNVNIEFRMTVFRPFRGEIIYGLIKSSNEEGIIIDLEFTSEVFIPYQNLP----- 115
Query: 121 EPDPYGRYEVKWIWEFGDTKYVIDGLDEIKFRVLSVNY----PSIPIEQAEG----SKPF 172
E + + E W+W T+ D + + FRV + P+I +G +P
Sbjct: 116 ENSTFSKAENVWVWNSEGTELFFDKGEPVLFRVEHEEWFDQRPTIVERDEKGEIVEERPT 175
Query: 173 APMVINGSIDYDGLGPVSWW 192
A VI GS+ GLGP WW
Sbjct: 176 AWRVI-GSMAQPGLGPTLWW 194
>gi|400596259|gb|EJP64035.1| RNA polymerase III subunit Rpc25 [Beauveria bassiana ARSEF 2860]
Length = 195
Score = 99.8 bits (247), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 63/197 (31%), Positives = 101/197 (51%), Gaps = 10/197 (5%)
Query: 1 MFYLSKIEHTLRLPPHLLRLPLNEAIKLELENVFLDKVIANLGLCISIYDIKEIEGGFVY 60
MF L+KI +++ P AI+ + + +KVI +GLCI +YDI G +
Sbjct: 1 MFILTKISDLVQIAPEDFSKRSIIAIEDNINAKYANKVIQKIGLCICLYDILWTSEGLIG 60
Query: 61 PGEG-ASTHTVKFRLVVFRPFVGEIIAAKLKESDANGLRLSLGFFEDIYVPSHLLPSPSR 119
G G + + ++FR++VFRPF GE+I +++ S G+ + FF+DI+VP LP+ +
Sbjct: 61 HGTGLVNVNGIEFRMIVFRPFKGEVIIGRIRSSTPAGINVRTDFFDDIFVPFEELPAGAE 120
Query: 120 SEPDPYGRYEVKWIWEFGDTKYVI-DGLDEIKFRVLSVNY-PSIPI--EQAEGSKPFAPM 175
Y E WIW + + + D + ++ +V+ + PI QAE S P
Sbjct: 121 -----YNHSEQLWIWNIDEEERLFYDTHEMVRLQVVDEEWHDQTPIGPTQAEDSPIKTPY 175
Query: 176 VINGSIDYDGLGPVSWW 192
I GS+ +GLG WW
Sbjct: 176 RIKGSMFKEGLGVCLWW 192
>gi|156544678|ref|XP_001605231.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC8-like
[Nasonia vitripennis]
Length = 175
Score = 99.8 bits (247), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 66/206 (32%), Positives = 102/206 (49%), Gaps = 48/206 (23%)
Query: 1 MFYLSKIEHTLRLPPHLLRLPLNEAIKLELENVFLDKVIANLGLCISIYDIKEIEGGFVY 60
MF L++++ T+R+PP + LN+AI EL +KV N+GLCI++ DI +IE +++
Sbjct: 1 MFVLAEMKDTVRIPPWKFKKKLNDAITDELNRKLSNKVYLNVGLCIALNDITKIEESYIF 60
Query: 61 PGEGASTHTVKFRLVVFRPFVGEIIAAKLKESDANGLRLSLGFFEDIYVPSHLLPSPSRS 120
PG+GAS HT +++LGFFEDI +P H L PSR
Sbjct: 61 PGDGAS-HT----------------------------KVTLGFFEDIVIPQHKLQYPSR- 90
Query: 121 EPDPYGRYEVKWIWEF----GDTKYVIDGLDE-IKFRVLSVNYPSIPIEQAEG------- 168
+ + E W+WE+ GD + + E I+FRV+ + + G
Sbjct: 91 ----FDQAEQVWVWEYDTGDGDKHDLFMDVGEIIRFRVVKETFTESLLCNPHGPKDSTVK 146
Query: 169 --SKPFAPMVINGSIDYDGLGPVSWW 192
S+ +P + +ID GLG +SWW
Sbjct: 147 TESEGVSPYTLEAAIDEPGLGLLSWW 172
>gi|407929309|gb|EKG22141.1| RNA polymerase Rpb7 [Macrophomina phaseolina MS6]
Length = 200
Score = 99.8 bits (247), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 65/198 (32%), Positives = 98/198 (49%), Gaps = 11/198 (5%)
Query: 1 MFYLSKIEHTLRLPPHLLRLPLNEAIKLELENVFLDKVIANLGLCISIYDIKEIEGGFVY 60
MF + I +++ P +AIK + + +KVI +GLCI + DI + G +
Sbjct: 1 MFLTTTISDLIQIKPEEFEKSSIQAIKDAIHTKYANKVIQEVGLCICLRDILKSSEGLIG 60
Query: 61 PGEGASTHTVKFRLVVFRPFVGEIIAAKLKESDANGLRLSLGFFEDIYVPSHLLPSPSRS 120
G G V+FRLV+FRPF GEII K+ SD G++++L FF+DI+VP + +
Sbjct: 61 HGTGIVNVNVEFRLVIFRPFKGEIIEGKISGSDHEGIKIALEFFDDIFVPGPV----NLF 116
Query: 121 EPDPYGRYEVKWIW--EFGDTKYVIDGLDEIKFRV----LSVNYPSIPIEQAEGSKPFAP 174
+ Y E W+W E GD + D + ++FRV + P P + +P
Sbjct: 117 DGVKYVGAERVWVWVTEQGDELF-FDLEETVRFRVEAEIWTDQSPQAPTTDDAQVERKSP 175
Query: 175 MVINGSIDYDGLGPVSWW 192
I S+ GLGP WW
Sbjct: 176 YRIIASMAQAGLGPTLWW 193
>gi|339238867|ref|XP_003380988.1| DNA-directed RNA polymerase III subunit polypeptide [Trichinella
spiralis]
gi|316976048|gb|EFV59393.1| DNA-directed RNA polymerase III subunit polypeptide [Trichinella
spiralis]
Length = 202
Score = 99.8 bits (247), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 54/199 (27%), Positives = 105/199 (52%), Gaps = 19/199 (9%)
Query: 1 MFYLSKIEHTLRLPPHLLRLPLNEAIKLELENVFLDKVIANLGLCISIYDIKEIEGGFVY 60
MF L K +R+PPH + + ++ ++ +F++KVI N GL + ++ I+EI
Sbjct: 13 MFKLCKFRQIIRIPPHRFGEDVVKYLERKIGEMFINKVILNYGLGVCVHSIEEIGDSITL 72
Query: 61 PGEGASTHTVKFRLVVFRPFVGEIIAAKLKESDANGLRLSLGFFEDIYVPSHLLPSPSRS 120
PG+G + V + ++VF P +GE++ ++ + D+ G+ DI++P LP PS+
Sbjct: 73 PGDGGAHTEVTWNMIVFHPNIGEVLKGEISKCDSTGV-------SDIFIPREYLPQPSK- 124
Query: 121 EPDPYGRYEVKWIWEF----GDTKYVIDGLDEIKFRVLSVNYPSIPIEQAEGSKPFAPMV 176
+ + E W W++ G + ++ +++FRV+ + IP + ++ S+
Sbjct: 125 ----FLQNEQIWSWQYEVDDGFAELFLEPGSKVRFRVIDEVFKDIPTQVSDDSQENTNQK 180
Query: 177 ---INGSIDYDGLGPVSWW 192
I G+++ GLG +SWW
Sbjct: 181 CYEIYGAMNDTGLGCISWW 199
>gi|330925060|ref|XP_003300899.1| hypothetical protein PTT_12262 [Pyrenophora teres f. teres 0-1]
gi|311324782|gb|EFQ91031.1| hypothetical protein PTT_12262 [Pyrenophora teres f. teres 0-1]
Length = 214
Score = 99.4 bits (246), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 61/200 (30%), Positives = 101/200 (50%), Gaps = 14/200 (7%)
Query: 1 MFYLSKIEHTLRLPPHLLRLPLNEAIKLELENVFLDKVIANLGLCISIYDIKEIEGGFVY 60
MF L+ I+ +++ P P +AIK + + +++I N+GLC+ ++D+ G +
Sbjct: 1 MFILTTIQDLIQIKPEDFSKPSPQAIKDVVNEKYSNRIIPNIGLCLCMWDLLSATEGLIG 60
Query: 61 PGEGASTHTVKFRLVVFRPFVGEIIAAKLKESDANGLRLSLGFFEDIYVPSHLLPSPSRS 120
G G ++FR+ VFRPF GEII +K S+ G+ + L F ++++P LP S
Sbjct: 61 HGTGLVNVNIEFRMTVFRPFRGEIIYGLIKSSNEEGIIIDLEFTSEVFIPYQNLPENST- 119
Query: 121 EPDPYGRYEVKWIWEFGDTKYVIDGLDEIKFRVLSVNY----PSIPIEQAEGS----KPF 172
+ + E W+W T+ D + + FRV + P+I + +G +P
Sbjct: 120 ----FSKAENVWVWNSEGTELFFDKGEPVLFRVEHEEWFDQRPTIVEKDDKGDIIEERPT 175
Query: 173 APMVINGSIDYDGLGPVSWW 192
A VI GS+ GLGP WW
Sbjct: 176 AWRVI-GSMAQPGLGPTLWW 194
>gi|392578056|gb|EIW71184.1| hypothetical protein TREMEDRAFT_42634 [Tremella mesenterica DSM
1558]
Length = 224
Score = 99.0 bits (245), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 73/218 (33%), Positives = 104/218 (47%), Gaps = 31/218 (14%)
Query: 1 MFYLSKIEHTLRLPPHLLRLPLNEAIKLELENVFLDKVIANLGLCISIYDIKEIEGGFVY 60
MF L ++ T+ +PP LP + IK + + +K+++ GL +S++DI E G V
Sbjct: 1 MFILVAVKDTIPVPPKAFALPPHITIKDAINRKYSNKLVSQKGLGLSVWDILTAEDGKVT 60
Query: 61 PGEGASTHTVKFRLVVFRPFVGEIIAAKLKESDANGLRLSLGFFEDIYVPSHLLPSPSRS 120
G G + V FRL++F PF+ EII K+ S +R+SLGFF D+Y+ LP S
Sbjct: 61 WGNGLMYYKVSFRLMLFSPFISEIIVGKVLSSSKKYIRISLGFFRDVYILPAFLPPNSAF 120
Query: 121 EPDPYGRYEVKWIW------------EFGDTKYV----IDGLDEIKFRVLSVNYPSI--- 161
+ D E KW W E +T Y ID + ++FRV S+ + I
Sbjct: 121 DQD-----ENKWFWYSDEDDRVYSQIELLNTIYTQRLYIDIGEPVRFRVDSIEWQDIRPP 175
Query: 162 PIEQAEGSKP-------FAPMVINGSIDYDGLGPVSWW 192
P G P A M + SI GLG VSWW
Sbjct: 176 PPPNELGELPPQKDPIDRAGMKVLASIAESGLGVVSWW 213
>gi|328771829|gb|EGF81868.1| hypothetical protein BATDEDRAFT_86925 [Batrachochytrium
dendrobatidis JAM81]
Length = 212
Score = 99.0 bits (245), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 68/215 (31%), Positives = 110/215 (51%), Gaps = 29/215 (13%)
Query: 1 MFYLSKIEHTLRLPPHLLRLPLNEAIKLELENVFLDKVIANLGLCISIYDIKEIEGGFVY 60
MF LS + +R+ P +AI EL + +KV+ N+GLCIS+YD+ + V+
Sbjct: 1 MFVLSILTDIVRVLPKDFYKGQEDAIVDELNFKYANKVLHNVGLCISVYDLTKASDPVVH 60
Query: 61 PGE-GASTHTVKFRLVVFRPFVGEIIAAKLKE-SDANGLRLSLGFFEDIYV-PSHLLPSP 117
+ G+ V+FR++VFRPF GEI+ K+K+ S G+R+++ FF+DI + PS L+P
Sbjct: 61 ACQDGSYQCQVEFRMIVFRPFKGEILEGKIKDCSPTAGVRITMNFFDDIIIPPSFLMPGS 120
Query: 118 SRSEPDPYGRYEVKWIWEFGDTKYVIDGLDEIKFRVLSVNYPSI-PIEQAE----GSKPF 172
Y E W+W++ + +D + I+FRV + + + P+++ + G+K
Sbjct: 121 E------YDTNEGLWVWKYDENDLFMDREEPIRFRVENEAFVDVGPVKEIKSGQIGNKTI 174
Query: 173 APM---------------VINGSIDYDGLGPVSWW 192
P I GSI LG SWW
Sbjct: 175 TPASGGAGTDEPHRDPPYTIVGSISESALGLKSWW 209
>gi|385302410|gb|EIF46542.1| rna polymerase iii subunit required for transcription initiation
[Dekkera bruxellensis AWRI1499]
Length = 189
Score = 99.0 bits (245), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 62/193 (32%), Positives = 97/193 (50%), Gaps = 22/193 (11%)
Query: 17 LLRLPLNEAIKLELENVFLDKVIANLGLCISIYDIKEIEGGFVYPGEGASTHTVKFRLVV 76
+ LP AIK EL + +KVI LGL I+++D+ +++ G + PG+G+ V FR VV
Sbjct: 1 MFSLPRLVAIKQELNGKYANKVIPKLGLVIAVWDVLKVDDGMLKPGDGSIYIKVVFRCVV 60
Query: 77 FRPFVGEIIAAKLKESDANGLRLSLGFFEDIYVPSHLLPSPSRSEPDPYGRYEVKWIWEF 136
F+PFVGE++ ++ G+++++ FF DI++P LL S P W+W+
Sbjct: 61 FKPFVGEVLTGWIESCSEEGIKVNMEFFNDIFIPKSLLFENSLYSPKDNA-----WVWQM 115
Query: 137 G-DTKYVIDGLDEIKFRVLSVNY-------PSIPI-----EQAEGSKPFA----PMVING 179
+ K +D + I FRV + P PI +Q E + P +
Sbjct: 116 DEENKLYLDVNERINFRVEEEVFNDVRPKGPDNPIVFDDDDQKENEQKKKHSTPPYALVA 175
Query: 180 SIDYDGLGPVSWW 192
S DG+G VSWW
Sbjct: 176 SCQTDGMGCVSWW 188
>gi|453089152|gb|EMF17192.1| DNA-directed RNA polymerase III 25 kd polypeptide [Mycosphaerella
populorum SO2202]
Length = 224
Score = 98.6 bits (244), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 61/206 (29%), Positives = 93/206 (45%), Gaps = 14/206 (6%)
Query: 1 MFYLSKIEHTLRLPPHLLRLPLNEAIKLELENVFLDKVIANLGLCISIYDIKEIEGGFVY 60
M+ L + +++ P+ P +I+ + + DKVI +GLCI + + G +
Sbjct: 1 MYTLITLADVVQIHPNDFHKPSIRSIEDFINTKYADKVIHRVGLCIGFHSLISASEGLIG 60
Query: 61 PGEGASTHTVKFRLVVFRPFVGEIIAAKLKESDANGLRLSLGFFEDIYVPSHLLPSPSRS 120
G G V FRLVVFRPF GEI+ A + +S G+ LS+ FFED+ VP L S
Sbjct: 61 HGTGIVNVNVDFRLVVFRPFKGEIMRATITQSSQQGIYLSVDFFEDLLVPPETLFEGSTW 120
Query: 121 EPDPYGRYEVKWIWEFG---DTKYVIDGLDEIKFRVLSVNYPS-----------IPIEQA 166
E D G W E G ++ D + R+ + + E+
Sbjct: 121 EKDDSGTMTFVWRTEAGGGAHNEFFFDNAESCMVRIEEEQWHDVSPDALRSQSYVTQEEE 180
Query: 167 EGSKPFAPMVINGSIDYDGLGPVSWW 192
E + P ++ GS+ + GLGP WW
Sbjct: 181 ENASRMPPYLVRGSMMHTGLGPTLWW 206
>gi|65301135|ref|NP_001018062.1| DNA-directed RNA polymerase III subunit RPC8 isoform b [Homo
sapiens]
gi|332859902|ref|XP_003317311.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC8 isoform 2
[Pan troglodytes]
gi|16878080|gb|AAH17248.1| Polymerase (RNA) III (DNA directed) polypeptide H (22.9kD) [Homo
sapiens]
gi|119580842|gb|EAW60438.1| polymerase (RNA) III (DNA directed) polypeptide H (22.9kD), isoform
CRA_b [Homo sapiens]
Length = 175
Score = 98.2 bits (243), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 66/206 (32%), Positives = 100/206 (48%), Gaps = 48/206 (23%)
Query: 1 MFYLSKIEHTLRLPPHLLRLPLNEAIKLELENVFLDKVIANLGLCISIYDIKEIEGGFVY 60
MF L ++ T+R+PP LN++I EL +KV+ N+GLCI ++DI ++E +V+
Sbjct: 1 MFVLVEMVDTVRIPPWQFERKLNDSIAEELNKKLANKVVYNVGLCICLFDITKLEDAYVF 60
Query: 61 PGEGASTHTVKFRLVVFRPFVGEIIAAKLKESDANGLRLSLGFFEDIYVPSHLLPSPSRS 120
PG+GAS HT ++SLGFF+DI +P L P++
Sbjct: 61 PGDGAS-HT----------------------------KVSLGFFDDILIPPESLQQPAK- 90
Query: 121 EPDPYGRYEVKWIWEF----GDTKYVIDGLDEIKFRVLSVNY----PSIP------IEQA 166
+ E W+WE+ G +D +EI+FRV+ ++ P+ P
Sbjct: 91 ----FDEAEQVWVWEYETEEGAHDLYMDTGEEIRFRVVDESFVDTSPTGPSSADATTSSE 146
Query: 167 EGSKPFAPMVINGSIDYDGLGPVSWW 192
E K AP + GSI GLG +SWW
Sbjct: 147 ELPKKEAPYTLVGSISEPGLGLLSWW 172
>gi|388579438|gb|EIM19762.1| hypothetical protein WALSEDRAFT_55467 [Wallemia sebi CBS 633.66]
Length = 223
Score = 98.2 bits (243), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 62/211 (29%), Positives = 109/211 (51%), Gaps = 24/211 (11%)
Query: 1 MFYLSKIEHTLRLPPHLLRLPLNEAIKLELENVFLDKVIANLGLCISIYDIKEIEGGFVY 60
MF L++++ T+ + P L L ++I + + +K+I +LGL + ++ + + GF+
Sbjct: 1 MFILTELKDTIAVKPSNLNKDLLDSIVDSINYKYSNKIIQDLGLALCLHSLLDSSEGFIQ 60
Query: 61 PGEGASTHTVKFRLVVFRPFVGEIIAAKLKESDANGLRLSLGFFEDIYVPSHLLPSPSRS 120
G + KF L++FRPFVGEI+ AK+K + G+ S+GFF+DI++P + LP ++
Sbjct: 61 HSNGNVYYKCKFNLIIFRPFVGEILIAKVKSTSEEGITASVGFFDDIFIPIYNLPPITQ- 119
Query: 121 EPDPYGRYEVKWIW-----EFGD-------TKYVIDGLDEIKFRVLSVNYPS-------I 161
Y + E + W E D + ID + I+ R+ + ++ + +
Sbjct: 120 ----YDKAESTFFWLANWEEDSDPFTSSPEQRAYIDIGENIRIRIEAEHFENVYPKPKKV 175
Query: 162 PIEQAEGSKPFAPMVINGSIDYDGLGPVSWW 192
IE++E + SID GLG VSWW
Sbjct: 176 AIEESEQDIIPTAYRLTASIDGQGLGVVSWW 206
>gi|119484158|ref|XP_001261982.1| DNA-directed rna polymerase III 25 kD polypeptide [Neosartorya
fischeri NRRL 181]
gi|119410138|gb|EAW20085.1| DNA-directed rna polymerase III 25 kD polypeptide [Neosartorya
fischeri NRRL 181]
Length = 201
Score = 97.8 bits (242), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 63/177 (35%), Positives = 95/177 (53%), Gaps = 17/177 (9%)
Query: 25 AIKLELENVFLDKVIANLGLCISIYDIKEIEGGFVYPGEGASTHTVKFRLVVFRPFVGEI 84
AI+ + + +KVI +GLCI YD+ E G + G G VKFRL+VFRPF GEI
Sbjct: 33 AIEDNINEKYANKVIQKIGLCIGFYDLLESSDGLIGHGTGLVNVNVKFRLIVFRPFKGEI 92
Query: 85 IAAKLKESDANGLRLSLGFFEDIYVPSHLLPSPSRSEPDPYGRYEVKWIWEFGD-TKYVI 143
+ K+ + +G+++ + FF DI +P LL +R + + W+WE D + +
Sbjct: 93 LLGKISSATQHGIKIGVEFFNDILIPPDLLLDGAR-----FDIADQVWVWENEDGSTFYF 147
Query: 144 DGLDEIKFRVLSVNY----PSIPIEQAEGS----KPFAPMVINGSIDYDGLGPVSWW 192
D + ++FRV + P+ P + +G+ KP P I GS+ GLGPVSWW
Sbjct: 148 DIGEIVRFRVEMEEWHDQIPNAP-DLGDGATIERKP--PYSIIGSMQMAGLGPVSWW 201
>gi|296085765|emb|CBI29576.3| unnamed protein product [Vitis vinifera]
Length = 299
Score = 97.8 bits (242), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 42/64 (65%), Positives = 55/64 (85%)
Query: 1 MFYLSKIEHTLRLPPHLLRLPLNEAIKLELENVFLDKVIANLGLCISIYDIKEIEGGFVY 60
MF+LS IEHT++L PHLL LPLNEA+K E E++FLDK+I NLGLCIS+YD++ I+GG V+
Sbjct: 1 MFFLSLIEHTVQLRPHLLDLPLNEAVKGEFESLFLDKIIVNLGLCISVYDMRSIDGGLVF 60
Query: 61 PGEG 64
P +G
Sbjct: 61 PRDG 64
>gi|391348227|ref|XP_003748350.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC8-like
[Metaseiulus occidentalis]
Length = 204
Score = 97.4 bits (241), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 63/208 (30%), Positives = 110/208 (52%), Gaps = 23/208 (11%)
Query: 1 MFYLSKIEHTLRLPP-HLLRLPLNEAIKLELENVFLDKVIANLGLCISIYDI--KEIEGG 57
MF +S++ +R+ P L + EA++ L N F++KV+ N GL I + D + +
Sbjct: 1 MFVVSELSDVVRVEPDKLTGKSIYEALRQALNNKFVNKVLLNCGLFIKVLDFLPQSSKTD 60
Query: 58 F-VYPGEGASTHTVKFRLVVFRPFVGEIIAAKLKESDANGLRLSLGFFEDIYVPSHLLPS 116
F + PG+GA V FR +VFRPF+ E+I +++ G+++SL FF+DI V LP
Sbjct: 61 FHILPGDGAVHKKVYFRAIVFRPFINEVIEGRVRSMSPEGIKISLEFFDDIIVQGTRLPH 120
Query: 117 PSRSEPDPYGRYEVKWIWEFG-----DTKYVIDGLDEIKFRVLSVNY-------PSIPIE 164
PS + + WIWE+G +++ D ++FRV+ + P++
Sbjct: 121 PSH-----WDGAKGCWIWEYGADSGESHNLLLEVGDRVRFRVVDEKFTDCSPVGPTLDTN 175
Query: 165 QAEGSKPFAPMVINGSIDYDGLGPVSWW 192
Q + + P + M + +++ GLG ++WW
Sbjct: 176 QQQ-NLPVSYM-LEAAMNEPGLGAITWW 201
>gi|403177922|ref|XP_003336364.2| hypothetical protein PGTG_18396 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
gi|375173264|gb|EFP91945.2| hypothetical protein PGTG_18396 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
Length = 238
Score = 97.4 bits (241), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 53/138 (38%), Positives = 80/138 (57%), Gaps = 3/138 (2%)
Query: 1 MFYLSKIEHTLRLPPHLLRLPLNEAIKLELENVFLDKVIANLGLCISIYDIKEIEGGFVY 60
MF LS ++ T+R+ I E+ + +KV+ +LGLCI+++D+ + G V
Sbjct: 1 MFVLSHLKDTVRVQARDFGRDRASVITAEINRKYSNKVLPDLGLCIALFDLLDASEGKVL 60
Query: 61 PGEGASTHTVKFRLVVFRPFVGEIIAAKLKESDANGLRLSLGFFEDIYVPSHLLPSPSRS 120
G+G H V+F LVVFRPF+GE + +K S +G+R+SL FF+DI++P LL SPS
Sbjct: 61 YGDGCLYHRVEFTLVVFRPFIGEHMIGTVKSSTPSGVRVSLKFFDDIHIPCRLLQSPSCY 120
Query: 121 EPDPYGRYEVKWIWEFGD 138
+P E W E+ D
Sbjct: 121 DP---TLNEFFWASEYSD 135
>gi|406865974|gb|EKD19014.1| RNA polymerase III subunit Rpc25 [Marssonina brunnea f. sp.
'multigermtubi' MB_m1]
Length = 250
Score = 97.4 bits (241), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 61/197 (30%), Positives = 101/197 (51%), Gaps = 8/197 (4%)
Query: 1 MFYLSKIEHTLRLPPHLLRLPLNEAIKLELENVFLDKVIANLGLCISIYDIKEIEGGFVY 60
MF L+KI +++ +A++ + + +KVI +GLC+ +YD+ G +
Sbjct: 30 MFILTKIADLVQIVSEDFNKDAFQALQDNINAKYANKVIQKIGLCVCLYDLLAASEGLIG 89
Query: 61 PGEGASTHTVKFRLVVFRPFVGEIIAAKLKESDANGLRLSLGFFEDIYVPSHLLPSPSRS 120
G G V+FRL+VFRPF E+I ++ + G+R+ + FF++I+VP LP + S
Sbjct: 90 HGTGLVNVNVEFRLIVFRPFKNEVITGRISSATPRGIRVRVPFFQEIFVPVDKLPEGA-S 148
Query: 121 EPDPYGRYEVKWIWEFGDTKYVIDGLDEIKFR----VLSVNYPSIPIEQAEG-SKPFAPM 175
+ G+Y W+ E + D D ++ R + + P P E+ EG S P
Sbjct: 149 FNEELGQY--IWVPEPDGDQLYFDANDIVRVRIEDEIWTDQSPVGPREKEEGASVKTHPY 206
Query: 176 VINGSIDYDGLGPVSWW 192
V+ GS++ GLGP WW
Sbjct: 207 VLIGSMEDAGLGPCLWW 223
>gi|209881416|ref|XP_002142146.1| DNA-directed RNA polymerase II subunit RPB7 [Cryptosporidium muris
RN66]
gi|209557752|gb|EEA07797.1| DNA-directed RNA polymerase II subunit RPB7, putative
[Cryptosporidium muris RN66]
Length = 198
Score = 96.7 bits (239), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 58/183 (31%), Positives = 94/183 (51%), Gaps = 24/183 (13%)
Query: 12 RLPPHLLRLPLNEAIKLELENVFLDKVIANLGLCISIYDIKEIEGGFVYPGEGASTHTVK 71
R H+L+ ++E +++KVI N+GL IS+ + ++ + +G+
Sbjct: 37 RSSLHILKERISEK--------YINKVIKNVGLVISLVEFDYVDHAVIDSDDGSLYFNTT 88
Query: 72 FRLVVFRPFVGEIIAAKLKESDANGLRLSLGFFEDIYVPSHLLPSPSRSEPDPYGRYEVK 131
FR++VF+PF+ EII + SD+ GL +SLGFF DI +PS+ L P D
Sbjct: 89 FRIIVFKPFISEIIEGIVINSDSTGLTVSLGFFNDIKIPSNELREPKSMNGDTK-----L 143
Query: 132 WIWEFGDTK--YVIDGLDEIKFRVLSVNYPSIPIEQAEGSKPFAPMVINGSIDYDGLGPV 189
W W + + Y+I+ + I+FRV V + + + MVI G++ DGLG +
Sbjct: 144 WSWNYETHQLYYLINSI--IRFRVTGVLFN-------DSDTEVSSMVIMGNVQNDGLGMI 194
Query: 190 SWW 192
SWW
Sbjct: 195 SWW 197
>gi|240275469|gb|EER38983.1| DNA-directed RNA polymerase III [Ajellomyces capsulatus H143]
Length = 202
Score = 96.3 bits (238), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 53/154 (34%), Positives = 83/154 (53%), Gaps = 6/154 (3%)
Query: 1 MFYLSKIEHTLRLPPHLLRLPLNEAIKLELENVFLDKVIANLGLCISIYDIKEIEGGFVY 60
MF L+ + +++ P AI+ + + +KVI N+GLCI YD+ E G +
Sbjct: 1 MFILTTLSDLVQISPEDFSKLSAVAIEDNINEKYANKVIQNVGLCIGFYDLLESSDGLIG 60
Query: 61 PGEGASTHTVKFRLVVFRPFVGEIIAAKLKESDANGLRLSLGFFEDIYVPSHLLPSPSRS 120
G G VKFRL+VFRPF GE+I K+ NG+++S+ FF DI++P LL +R
Sbjct: 61 HGTGLVNVNVKFRLIVFRPFKGEVILGKITSGTENGIKISVEFFNDIFIPPSLLLDGAR- 119
Query: 121 EPDPYGRYEVKWIWEFGDTK-YVIDGLDEIKFRV 153
+ + WIW+ G+ + D + ++FRV
Sbjct: 120 ----FDFADQVWIWDNGEGAIFYFDIGETVRFRV 149
>gi|67521980|ref|XP_659051.1| hypothetical protein AN1447.2 [Aspergillus nidulans FGSC A4]
gi|40745421|gb|EAA64577.1| hypothetical protein AN1447.2 [Aspergillus nidulans FGSC A4]
gi|259486758|tpe|CBF84875.1| TPA: DNA-directed RNA polymerase III subunit 22.9 kDa, putative
(AFU_orthologue; AFUA_8G04350) [Aspergillus nidulans
FGSC A4]
Length = 208
Score = 96.3 bits (238), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 53/153 (34%), Positives = 81/153 (52%), Gaps = 5/153 (3%)
Query: 1 MFYLSKIEHTLRLPPHLLRLPLNEAIKLELENVFLDKVIANLGLCISIYDIKEIEGGFVY 60
MF L+ I +++ P + AI+ + + +KVI +GLCI YD+ E G +
Sbjct: 1 MFILTTISDLIQISPEDFSKYSSVAIEDNINEKYANKVIQKIGLCIGFYDLLESSDGLIG 60
Query: 61 PGEGASTHTVKFRLVVFRPFVGEIIAAKLKESDANGLRLSLGFFEDIYVPSHLLPSPSRS 120
G G VKFRL+VFRPF GEI+ K+ + NG+++ + FF DI VP LL +R
Sbjct: 61 HGTGLVNVNVKFRLIVFRPFRGEIVLGKISSATENGIKIGVEFFNDILVPPDLLLDGAR- 119
Query: 121 EPDPYGRYEVKWIWEFGDTKYVIDGLDEIKFRV 153
+ + WIWE + + D + ++FRV
Sbjct: 120 ----FDYQDQVWIWENEEGTFYFDVGEVVRFRV 148
>gi|345566306|gb|EGX49249.1| hypothetical protein AOL_s00078g282 [Arthrobotrys oligospora ATCC
24927]
Length = 194
Score = 96.3 bits (238), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 60/201 (29%), Positives = 99/201 (49%), Gaps = 16/201 (7%)
Query: 1 MFYLSKIEHTLRLPPHLLRLPLNEAIKLELENVFLDKVIANLGLCISIYDIKEIEGGFVY 60
MF L+++ + + P + +A++ ++ + +KVI +GL I +YDI + G +
Sbjct: 1 MFILTRLSDLVTIQPTSFTVTTRQALEDQINARYANKVIHKVGLVICLYDILKSSDGLIG 60
Query: 61 PGEGASTHTVKFRLVVFRPFVGEIIAAKLKESDANGLRLSLGFFEDIYVPSHLLPSPSRS 120
G G V+FRL+VFRPF GE+I ++ S NG+ + FF+++++P L
Sbjct: 61 SGTGDVNINVEFRLIVFRPFKGEVITGRIANSTPNGIHVRFDFFDEVFLPKDYL-----F 115
Query: 121 EPDPYGRYEVKWIWEFGD-TKYVIDGLDEIKFRVLSVNY-PSIPIEQA-------EGSKP 171
E + E W+W D + D + ++FRV + + P++ A KP
Sbjct: 116 EGSVFDHNEQVWVWRTEDGDELFFDKNESVRFRVEEEEFIDNTPVDPALRDSLADADMKP 175
Query: 172 FAPMVINGSIDYDGLGPVSWW 192
P I GS GLG VSWW
Sbjct: 176 --PYKIIGSCYQSGLGVVSWW 194
>gi|449297230|gb|EMC93248.1| hypothetical protein BAUCODRAFT_141757 [Baudoinia compniacensis
UAMH 10762]
Length = 214
Score = 96.3 bits (238), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 65/203 (32%), Positives = 92/203 (45%), Gaps = 13/203 (6%)
Query: 1 MFYLSKIEHTLRLPPHLLRLPLNEAIKLELENVFLDKVIANLGLCISIYDIKEIEGGFVY 60
M+ L I ++L P AI+ L + DKVI +GLC+ + + + G +
Sbjct: 1 MYILVSIADVVQLHPSDFHKASRRAIEDWLNAKYADKVIHKVGLCVGFHSLIKASEGLIG 60
Query: 61 PGEGASTHTVKFRLVVFRPFVGEIIAAKLKESDANGLRLSLGFFEDIYVPSHLLPSPSRS 120
G G V FR+VVFRPF GEII + S NG+++S GFFED+ VP L S S
Sbjct: 61 HGTGIVNVNVDFRVVVFRPFKGEIIRGVISASTENGMQMSTGFFEDVVVPKEWLFSVSDF 120
Query: 121 EPDPYGRYEVKWIWEFGDTKYVIDGLDEIKFRVLSVNYPSIPIEQA-----------EGS 169
E + G V WIW D D L+ RV S + + + + +
Sbjct: 121 ESED-GAPPV-WIWRTNDMSLYFDKLERCLMRVESEEWTDMSPQMKRPDDFDTERLDQYN 178
Query: 170 KPFAPMVINGSIDYDGLGPVSWW 192
P I S+ + GLG +WW
Sbjct: 179 MRTGPYRIMASMMHTGLGVAAWW 201
>gi|354504595|ref|XP_003514359.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC8-like
[Cricetulus griseus]
gi|344257851|gb|EGW13955.1| DNA-directed RNA polymerase III subunit RPC8 [Cricetulus griseus]
Length = 175
Score = 95.9 bits (237), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 66/206 (32%), Positives = 100/206 (48%), Gaps = 48/206 (23%)
Query: 1 MFYLSKIEHTLRLPPHLLRLPLNEAIKLELENVFLDKVIANLGLCISIYDIKEIEGGFVY 60
MF L ++ T+R+PP LN++I EL +KV+ N+GLCI ++DI ++E +V+
Sbjct: 1 MFVLVEMVDTVRIPPWQFERKLNDSIAEELNKKLANKVVYNVGLCICLFDITKLEDAYVF 60
Query: 61 PGEGASTHTVKFRLVVFRPFVGEIIAAKLKESDANGLRLSLGFFEDIYVPSHLLPSPSRS 120
PG+GAS HT ++SLGFF+DI +P L P++
Sbjct: 61 PGDGAS-HT----------------------------KVSLGFFDDILIPPESLQQPAK- 90
Query: 121 EPDPYGRYEVKWIWEF----GDTKYVIDGLDEIKFRVLSVNY----PSIPIEQAEGS--- 169
+ E W+WE+ G +D +EI+FRV+ ++ P+ P S
Sbjct: 91 ----FDETEQVWVWEYETEEGAHDLYMDTGEEIRFRVVDESFVDTSPTGPSSAEAASSSE 146
Query: 170 ---KPFAPMVINGSIDYDGLGPVSWW 192
K AP + GSI GLG +SWW
Sbjct: 147 ELPKKEAPYTLVGSISEPGLGLLSWW 172
>gi|410965707|ref|XP_003989383.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC8 isoform 2
[Felis catus]
Length = 175
Score = 95.9 bits (237), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 66/206 (32%), Positives = 100/206 (48%), Gaps = 48/206 (23%)
Query: 1 MFYLSKIEHTLRLPPHLLRLPLNEAIKLELENVFLDKVIANLGLCISIYDIKEIEGGFVY 60
MF L ++ T+R+PP LN++I EL +KV+ N+GLCI ++DI ++E +V+
Sbjct: 1 MFVLVEMVDTVRIPPWQFERKLNDSIAEELNKKLANKVVYNVGLCICLFDITKLEDAYVF 60
Query: 61 PGEGASTHTVKFRLVVFRPFVGEIIAAKLKESDANGLRLSLGFFEDIYVPSHLLPSPSRS 120
PG+GAS HT ++SLGFF+DI +P L P++
Sbjct: 61 PGDGAS-HT----------------------------KVSLGFFDDILIPPESLQQPAK- 90
Query: 121 EPDPYGRYEVKWIWEF----GDTKYVIDGLDEIKFRVLSVNY----PSIPIEQAEGS--- 169
+ E W+WE+ G +D +EI+FRV+ ++ P+ P S
Sbjct: 91 ----FDEAEQVWVWEYETEEGAHDLYMDTGEEIRFRVVDESFVDTSPTGPSSAEATSSSE 146
Query: 170 ---KPFAPMVINGSIDYDGLGPVSWW 192
K AP + GSI GLG +SWW
Sbjct: 147 ELPKKEAPYTLVGSISEPGLGLLSWW 172
>gi|149743080|ref|XP_001502576.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC8-like
isoform 2 [Equus caballus]
Length = 175
Score = 95.5 bits (236), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 66/206 (32%), Positives = 100/206 (48%), Gaps = 48/206 (23%)
Query: 1 MFYLSKIEHTLRLPPHLLRLPLNEAIKLELENVFLDKVIANLGLCISIYDIKEIEGGFVY 60
MF L ++ T+R+PP LN++I EL +KV+ N+GLCI ++DI ++E +V+
Sbjct: 1 MFVLVEMVDTVRIPPWQFERKLNDSIAEELNKKLANKVVYNVGLCICLFDITKLEDAYVF 60
Query: 61 PGEGASTHTVKFRLVVFRPFVGEIIAAKLKESDANGLRLSLGFFEDIYVPSHLLPSPSRS 120
PG+GAS HT ++SLGFF+DI +P L P++
Sbjct: 61 PGDGAS-HT----------------------------KVSLGFFDDILIPPESLQQPAK- 90
Query: 121 EPDPYGRYEVKWIWEF----GDTKYVIDGLDEIKFRVLSVNY----PSIPIEQAEGS--- 169
+ E W+WE+ G +D +EI+FRV+ ++ P+ P S
Sbjct: 91 ----FDDTEQVWVWEYETEEGAHDLYMDTGEEIRFRVVDESFVDTSPTGPSSAEATSSSE 146
Query: 170 ---KPFAPMVINGSIDYDGLGPVSWW 192
K AP + GSI GLG +SWW
Sbjct: 147 ELPKKEAPYTLVGSISEPGLGLLSWW 172
>gi|344296184|ref|XP_003419789.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC8-like
isoform 2 [Loxodonta africana]
Length = 175
Score = 95.5 bits (236), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 65/206 (31%), Positives = 100/206 (48%), Gaps = 48/206 (23%)
Query: 1 MFYLSKIEHTLRLPPHLLRLPLNEAIKLELENVFLDKVIANLGLCISIYDIKEIEGGFVY 60
MF L ++ T+R+PP LN++I EL +KV+ N+GLCI ++DI ++E +V+
Sbjct: 1 MFVLVEMVDTVRIPPWQFERKLNDSIAEELNKKLANKVVYNVGLCICLFDITKLEDAYVF 60
Query: 61 PGEGASTHTVKFRLVVFRPFVGEIIAAKLKESDANGLRLSLGFFEDIYVPSHLLPSPSRS 120
PG+GAS HT ++SLGFF+DI +P L P++
Sbjct: 61 PGDGAS-HT----------------------------KVSLGFFDDILIPPESLQQPAK- 90
Query: 121 EPDPYGRYEVKWIWEF----GDTKYVIDGLDEIKFRVLSVNY----PSIPIEQAEGS--- 169
+ E W+WE+ G +D +EI+FRV+ ++ P+ P S
Sbjct: 91 ----FDEAEQVWVWEYETEEGAHDLYMDTGEEIRFRVVDESFVDTSPTGPSSAEATSSSE 146
Query: 170 ---KPFAPMVINGSIDYDGLGPVSWW 192
+ AP + GSI GLG +SWW
Sbjct: 147 EPPRKEAPYTLAGSISEPGLGLLSWW 172
>gi|301787831|ref|XP_002929329.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC8-like
isoform 2 [Ailuropoda melanoleuca]
Length = 175
Score = 95.5 bits (236), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 66/206 (32%), Positives = 100/206 (48%), Gaps = 48/206 (23%)
Query: 1 MFYLSKIEHTLRLPPHLLRLPLNEAIKLELENVFLDKVIANLGLCISIYDIKEIEGGFVY 60
MF L ++ T+R+PP LN++I EL +KV+ N+GLCI ++DI ++E +V+
Sbjct: 1 MFVLVEMVDTVRIPPWQFERKLNDSIAEELNKKLANKVMYNVGLCICLFDITKLEDAYVF 60
Query: 61 PGEGASTHTVKFRLVVFRPFVGEIIAAKLKESDANGLRLSLGFFEDIYVPSHLLPSPSRS 120
PG+GAS HT ++SLGFF+DI +P L P++
Sbjct: 61 PGDGAS-HT----------------------------KVSLGFFDDILIPPESLQQPAK- 90
Query: 121 EPDPYGRYEVKWIWEF----GDTKYVIDGLDEIKFRVLSVNY----PSIPIEQAEGS--- 169
+ E W+WE+ G +D +EI+FRV+ ++ P+ P S
Sbjct: 91 ----FDEAEQVWVWEYETEEGAHDLYMDTGEEIRFRVVDESFVDTSPTGPSSAEAMSSSE 146
Query: 170 ---KPFAPMVINGSIDYDGLGPVSWW 192
K AP + GSI GLG +SWW
Sbjct: 147 ELPKKEAPYTLVGSISEPGLGLLSWW 172
>gi|426225830|ref|XP_004007064.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC8 isoform 2
[Ovis aries]
Length = 175
Score = 95.1 bits (235), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 65/206 (31%), Positives = 100/206 (48%), Gaps = 48/206 (23%)
Query: 1 MFYLSKIEHTLRLPPHLLRLPLNEAIKLELENVFLDKVIANLGLCISIYDIKEIEGGFVY 60
MF L ++ T+R+PP LN++I EL +KV+ N+GLCI ++DI ++E +V+
Sbjct: 1 MFVLVEMVDTVRIPPWQFERKLNDSIAEELNKKLANKVVYNVGLCICLFDITKLEDAYVF 60
Query: 61 PGEGASTHTVKFRLVVFRPFVGEIIAAKLKESDANGLRLSLGFFEDIYVPSHLLPSPSRS 120
PG+GAS HT ++SLGFF+DI +P L P++
Sbjct: 61 PGDGAS-HT----------------------------KVSLGFFDDILIPPESLQQPAK- 90
Query: 121 EPDPYGRYEVKWIWEF----GDTKYVIDGLDEIKFRVLSVNY----PSIPIEQAEGS--- 169
+ E W+WE+ G +D +E++FRV+ ++ P+ P S
Sbjct: 91 ----FDEAEQVWVWEYETEEGAHDLYMDIGEEVRFRVVDESFVDTSPTGPSSAEATSSSE 146
Query: 170 ---KPFAPMVINGSIDYDGLGPVSWW 192
K AP + GSI GLG +SWW
Sbjct: 147 ELPKKAAPYTLMGSISEPGLGLLSWW 172
>gi|242799025|ref|XP_002483289.1| DNA-directed RNA polymerase III subunit 22.9 kDa, putative
[Talaromyces stipitatus ATCC 10500]
gi|218716634|gb|EED16055.1| DNA-directed RNA polymerase III subunit 22.9 kDa, putative
[Talaromyces stipitatus ATCC 10500]
Length = 195
Score = 95.1 bits (235), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 65/200 (32%), Positives = 97/200 (48%), Gaps = 13/200 (6%)
Query: 1 MFYLSKIEHTLRLPPHLLRLPLNEAIKLELENVFLDKVIANLGLCISIYDIKEIEGGFVY 60
MF L+ I +++ P AI+ + + +KV+ N+GLCI YD+ + G +
Sbjct: 1 MFILTTISDLVQIRPEDFSKFSAVAIEDNINEKYANKVVQNIGLCIGFYDLLKSSDGLIG 60
Query: 61 PGEGASTHTVKFRLVVFRPFVGEIIAAKLKESDANGLRLSLGFFEDIYVPSHLLPSPSRS 120
G G V FRL+VFRPF GEI+ K+ S GL++ + FF DI VP LL S
Sbjct: 61 HGTGLVNVNVTFRLIVFRPFKGEILLGKITGSSEEGLKIGMEFFSDITVPGDLLFDGSE- 119
Query: 121 EPDPYGRYEVKWIWEFGDT--KYVIDGLDEIKFRVLSVNY----PSIP--IEQAEGSKPF 172
Y E W W + D + D + ++FRV + + P+ P +E S+
Sbjct: 120 ----YDIAENLWAWHYPDAPEPHWYDIGEVVRFRVEAEEWHDQRPTGPDRMEAQTVSESK 175
Query: 173 APMVINGSIDYDGLGPVSWW 192
P + S+ DGLG +WW
Sbjct: 176 PPYSLIASMAIDGLGRPAWW 195
>gi|169602221|ref|XP_001794532.1| hypothetical protein SNOG_04106 [Phaeosphaeria nodorum SN15]
gi|160706125|gb|EAT87866.2| hypothetical protein SNOG_04106 [Phaeosphaeria nodorum SN15]
Length = 270
Score = 94.4 bits (233), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 58/199 (29%), Positives = 100/199 (50%), Gaps = 14/199 (7%)
Query: 2 FYLSKIEHTLRLPPHLLRLPLNEAIKLELENVFLDKVIANLGLCISIYDIKEIEGGFVYP 61
F + I+ +++ P P +AIK + + +K++ +GLCI ++D+ G +
Sbjct: 60 FSQTTIQDLIQIKPQDFSKPSAQAIKDVVNEKYANKIVPGIGLCICMWDLLTATEGLIGH 119
Query: 62 GEGASTHTVKFRLVVFRPFVGEIIAAKLKESDANGLRLSLGFFEDIYVPSHLLPSPSRSE 121
G G ++FR+ VFRPF GEII ++K S +G+ + L F +++VP L E
Sbjct: 120 GTGLVNVNIEFRMTVFRPFRGEIIYGRIKSSSPDGIIIDLDFTSEVFVPYQNL-----FE 174
Query: 122 PDPYGRYEVKWIWEFGDTKYVIDGLDEIKFRVLSVNY----PSIPIEQAEGS----KPFA 173
+ + E W+W T+ +D + + FRV + P+I + +G+ + A
Sbjct: 175 NSSFSQAEGVWVWNSDGTELFLDKGEPVLFRVEQEEWFDQRPTIVQKDEQGNVIEERGTA 234
Query: 174 PMVINGSIDYDGLGPVSWW 192
VI GS++ GLGP WW
Sbjct: 235 WRVI-GSMNQAGLGPTLWW 252
>gi|350296038|gb|EGZ77015.1| putative DNA-directed RNA polymerase III subunit 22.9 kDa
[Neurospora tetrasperma FGSC 2509]
Length = 193
Score = 94.0 bits (232), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 56/197 (28%), Positives = 94/197 (47%), Gaps = 10/197 (5%)
Query: 1 MFYLSKIEHTLRLPPHLLRLPLNEAIKLELENVFLDKVIANLGLCISIYDIKEIEGGFVY 60
MF +KI +++ P AI+ + + +KV+ +GL + ++D+ G +
Sbjct: 1 MFITTKIADLVQIAPEDFSKESFVAIEDNINTKYANKVVQKVGLFVCLWDVTWTSEGQIG 60
Query: 61 PGEGASTHTVKFRLVVFRPFVGEIIAAKLKESDANGLRLSLGFFEDIYVPSHLLPSPSRS 120
G G V+F +VVFRPF E+I A++ G+ L + FF DI+VP+ LP S
Sbjct: 61 HGSGLVNVNVEFEMVVFRPFKHEVILARITHQTEEGIYLGMDFFNDIFVPAAELPDNSE- 119
Query: 121 EPDPYGRYEVKWIWEFGDTKYVIDGLDEIKFRVLSVNY----PSIPIE-QAEGSKPFAPM 175
+ E W+W+ + D + ++FRV+ + P+ P+E ++ P
Sbjct: 120 ----FDTTEKVWVWKEEGQELYFDNNEMVRFRVIGEEWHDQTPTGPVEVDQTANQLLPPY 175
Query: 176 VINGSIDYDGLGPVSWW 192
I GS+ GLG WW
Sbjct: 176 KITGSMKEGGLGCCLWW 192
>gi|296806184|ref|XP_002843902.1| DNA-directed RNA polymerase III 25 kD polypeptide [Arthroderma otae
CBS 113480]
gi|238845204|gb|EEQ34866.1| DNA-directed RNA polymerase III 25 kD polypeptide [Arthroderma otae
CBS 113480]
Length = 202
Score = 94.0 bits (232), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 66/209 (31%), Positives = 103/209 (49%), Gaps = 25/209 (11%)
Query: 1 MFYLSKIEHTLRLPPHLLRLPLNEAIKLELENVFLDKVIANLGLCISIYDIKEIEGGFVY 60
MF L+ + +++ P + AI+ + + +KVI N+GLCI+ YD+ E G +
Sbjct: 1 MFLLTTMSDLVQIAPEDFSKLSSVAIEDNINEKYANKVIQNVGLCIAFYDLLESSDGLIG 60
Query: 61 PGEGAST-------HTVKFRLVVFRPFVGEIIAAKLKESDANGLRLSLGFFEDIYVPSHL 113
G G VKFR++VFRPF GE+I K+ G+++ + FF DI VP L
Sbjct: 61 HGTGLVNVNERWLILAVKFRIIVFRPFKGEVIIGKITNGTEQGIKIGVEFFNDIIVPPDL 120
Query: 114 LPSPSRSEPDPYGRYEVKWIWEFGDTK-YVIDGLDEIKFRVLSVNY----PSIPIEQAEG 168
L +R + + WIW+ G+ + D + ++FRV + P+ P + +G
Sbjct: 121 LLDGAR-----FDMKDQVWIWDNGEGGIFYFDVGETVRFRVEQEEWHDQVPTAP-DLHDG 174
Query: 169 -----SKPFAPMVINGSIDYDGLGPVSWW 192
KP P I GS+ GLG V+WW
Sbjct: 175 VAFPDRKP--PYSIIGSMQVAGLGLVAWW 201
>gi|83286669|ref|XP_730262.1| RNA polymerase Rpb7 [Plasmodium yoelii yoelii 17XNL]
gi|23489936|gb|EAA21827.1| RNA polymerase Rpb7, N-terminal domain, putative [Plasmodium yoelii
yoelii]
Length = 213
Score = 94.0 bits (232), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 63/184 (34%), Positives = 88/184 (47%), Gaps = 13/184 (7%)
Query: 1 MFYLSKIEHTLRLPPHLLRLPLNEAIKLELENVFLDKVIANLGLCISIYDIKEIEGGFVY 60
MF L +IE + + H + I+ L ++DKV+ N GLC+ +YDI EI+ +
Sbjct: 1 MFSLVRIEDVISIEAHFNDNEIKNIIEFLLRTKYVDKVVQNAGLCVGLYDILEIKNKEIL 60
Query: 61 PGEGASTHTVKFRLVVFRPFVGEIIAAKLKESDANGLRLSLGFFEDIYVPSHLLPSPSRS 120
G G V FRLV F P+ EII +K SD NG+ +SLGFFE+I V L
Sbjct: 61 KGCGTIRLNVIFRLVFFHPYENEIIEGYVKSSDHNGIIVSLGFFENIRVNRAYL-----K 115
Query: 121 EPDPYGRYEVKWIWEFGDTKYVIDGLDEIKFRVLSVNYPSIPIEQAEGSK-------PFA 173
EP + + +W W + K + I+ R+L Y S P E E FA
Sbjct: 116 EPKEFDDEKNEWYWTYEGIKCFYTKNEPIRIRILET-YFSDPNELNEDESIPSMSITQFA 174
Query: 174 PMVI 177
+VI
Sbjct: 175 AIVI 178
>gi|452990025|gb|EME89780.1| hypothetical protein MYCFIDRAFT_213792 [Pseudocercospora fijiensis
CIRAD86]
Length = 224
Score = 93.6 bits (231), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 59/208 (28%), Positives = 95/208 (45%), Gaps = 18/208 (8%)
Query: 1 MFYLSKIEHTLRLPPHLLRLPLNEAIKLELENVFLDKVIANLGLCISIYDIKEIEGGFVY 60
M+ L + +++ P P +I+ + + DKVI +GLC+ + + G +
Sbjct: 1 MYTLVTLADVVQIHPTDFHKPSIRSIEDFINAKYADKVIHKVGLCVGFHSLVSASEGLIG 60
Query: 61 PGEGASTHTVKFRLVVFRPFVGEIIAAKLKESDANGLRLSLGFFEDIYVPSHLLPSPSRS 120
G G V FRL+VFRPF GEII A + +S+ G+ LS+ F+ED+ VP L ++
Sbjct: 61 HGTGIVNVNVDFRLIVFRPFKGEIIRATITQSNMTGIALSVDFYEDLVVPPETLFDNTKW 120
Query: 121 EPDPYGRYEVKWIWEFGD---TKYVIDGLDEIKFRV-------------LSVNYPSIPIE 164
E D G + W + G+ ++ D + R+ S +Y S E
Sbjct: 121 EQDDNGTWAYVWRADDGEGGVNEFFFDNAESCMVRIEEESWNDISPDALRSQSYASKEEE 180
Query: 165 QAEGSKPFAPMVINGSIDYDGLGPVSWW 192
P P ++ GS+ + G GP WW
Sbjct: 181 DLASKAP--PYLVRGSMMHTGTGPTLWW 206
>gi|73968964|ref|XP_858018.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC8 isoform 2
[Canis lupus familiaris]
Length = 175
Score = 93.6 bits (231), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 65/206 (31%), Positives = 99/206 (48%), Gaps = 48/206 (23%)
Query: 1 MFYLSKIEHTLRLPPHLLRLPLNEAIKLELENVFLDKVIANLGLCISIYDIKEIEGGFVY 60
MF L ++ T+R+PP LN++I EL +KV+ ++GLCI ++DI +E +V+
Sbjct: 1 MFVLVEMVDTVRIPPWQFERKLNDSIAEELNKKLANKVVYSVGLCICLFDITRLEDAYVF 60
Query: 61 PGEGASTHTVKFRLVVFRPFVGEIIAAKLKESDANGLRLSLGFFEDIYVPSHLLPSPSRS 120
PG+GAS HT ++SLGFF+DI +P L P++
Sbjct: 61 PGDGAS-HT----------------------------KVSLGFFDDILIPPESLQQPAK- 90
Query: 121 EPDPYGRYEVKWIWEF----GDTKYVIDGLDEIKFRVLSVNY----PSIPIEQAEGS--- 169
+ E W+WE+ G +D +EI+FRV+ ++ P+ P S
Sbjct: 91 ----FDEAEQVWVWEYETEEGAHDLYMDTGEEIRFRVVDESFVDTSPTGPSSAEATSSSE 146
Query: 170 ---KPFAPMVINGSIDYDGLGPVSWW 192
K AP + GSI GLG +SWW
Sbjct: 147 ELPKKEAPYTLVGSISEPGLGLLSWW 172
>gi|66362138|ref|XP_628033.1| RPB7 subunit of the RNA polymerase III, OB fold [Cryptosporidium
parvum Iowa II]
gi|46227635|gb|EAK88570.1| RPB7 subunit of the RNA polymerase III, OB fold [Cryptosporidium
parvum Iowa II]
Length = 209
Score = 93.6 bits (231), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 52/169 (30%), Positives = 88/169 (52%), Gaps = 14/169 (8%)
Query: 26 IKLELENVFLDKVIANLGLCISIYDIKEIEGGFVYPGEGASTHTVKFRLVVFRPFVGEII 85
++ + + +L+KV+ N GL I +++ + EG V F+++ FRP+VGE+I
Sbjct: 52 LRNRINDKYLNKVVKNAGLMIYFVGFDDVDHADIDNDEGGLLFCVTFKMISFRPYVGEVI 111
Query: 86 AAKLKESDANGLRLSLGFFEDIYVPSHLLPSPSRSEPDPYGRYEVKWIWEFGDTK--YVI 143
+ +SD+ GL +SLGFF DI +P + L P + + W W++ + K Y+I
Sbjct: 112 EGVVIDSDSTGLTVSLGFFSDIKIPCNDLREPKSIDSNTK-----IWSWDYENHKLCYLI 166
Query: 144 DGLDEIKFRVLSVNYPSIPIEQAEGSKPFAPMVINGSIDYDGLGPVSWW 192
D I+F+V S+ + MV+ G++ DGLG +SWW
Sbjct: 167 DS--TIRFKV-----SSVVFNDQSHDNSVSSMVVVGNVQNDGLGMISWW 208
>gi|198421695|ref|XP_002128711.1| PREDICTED: similar to KIAA1665 protein isoform 2 [Ciona
intestinalis]
Length = 179
Score = 93.6 bits (231), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 60/207 (28%), Positives = 99/207 (47%), Gaps = 46/207 (22%)
Query: 1 MFYLSKIEHTLRLPPHLLRLPLNEAIKLELENVFLDKVIANLGLCISIYDIKEIEGGFVY 60
MF L +++ T+++ P L + LN+A+K+EL +KV+ N+G+CI ++DI + E +++
Sbjct: 1 MFILVEMKDTVKVEPWLFNVNLNDAVKVELNRRLANKVVYNIGVCICLFDILKYEDSYIF 60
Query: 61 PGEGASTHTVKFRLVVFRPFVGEIIAAKLKESDANGLRLSLGFFEDIYVPSHLLPSPSRS 120
PG+GAS HT G+ +SLGFF+DI +P L PS+
Sbjct: 61 PGDGAS-HT-------------------------KGVTVSLGFFDDILIPPESLQQPSK- 93
Query: 121 EPDPYGRYEVKWIWEF----GDTKYVIDGLDEIKFRVLSVNYP-SIPI----------EQ 165
+ E W+WE+ G +D + I+ RV+ + + P+ +
Sbjct: 94 ----FDESEQVWVWEYETDEGTHDLFMDVNEPIRLRVVDETFTDTTPMSAPPTTATTSTE 149
Query: 166 AEGSKPFAPMVINGSIDYDGLGPVSWW 192
KP P +I I GLG + WW
Sbjct: 150 VASKKPTIPYLIKAVISEPGLGLLCWW 176
>gi|194037190|ref|XP_001929172.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC8 isoform 2
[Sus scrofa]
Length = 175
Score = 93.2 bits (230), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 64/206 (31%), Positives = 100/206 (48%), Gaps = 48/206 (23%)
Query: 1 MFYLSKIEHTLRLPPHLLRLPLNEAIKLELENVFLDKVIANLGLCISIYDIKEIEGGFVY 60
MF L ++ T+R+PP LN++I EL +KV+ N+GLCI ++DI ++E +V+
Sbjct: 1 MFVLVEMVDTVRIPPWQFERKLNDSIAEELNKKLANKVVYNVGLCICLFDITKLEDAYVF 60
Query: 61 PGEGASTHTVKFRLVVFRPFVGEIIAAKLKESDANGLRLSLGFFEDIYVPSHLLPSPSRS 120
PG+GAS HT ++SLGFF+DI +P L P++
Sbjct: 61 PGDGAS-HT----------------------------KVSLGFFDDILIPPESLQQPAK- 90
Query: 121 EPDPYGRYEVKWIWEF----GDTKYVIDGLDEIKFRVLSVNY----PSIPIEQAEGS--- 169
+ E W+WE+ G +D +E++FRV+ ++ P+ P S
Sbjct: 91 ----FDEAEQVWVWEYETEEGAHDLYMDTGEELRFRVVDESFVDTSPTGPSSAEAASSSE 146
Query: 170 ---KPFAPMVINGSIDYDGLGPVSWW 192
+ AP + GSI GLG +SWW
Sbjct: 147 ELPRKEAPYTLVGSICEPGLGLLSWW 172
>gi|336273894|ref|XP_003351701.1| hypothetical protein SMAC_00243 [Sordaria macrospora k-hell]
gi|380095980|emb|CCC06027.1| unnamed protein product [Sordaria macrospora k-hell]
Length = 193
Score = 92.4 bits (228), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 56/197 (28%), Positives = 94/197 (47%), Gaps = 10/197 (5%)
Query: 1 MFYLSKIEHTLRLPPHLLRLPLNEAIKLELENVFLDKVIANLGLCISIYDIKEIEGGFVY 60
MF +KI +++ P AI+ + + +KV+ +GL I ++D+ G +
Sbjct: 1 MFITTKIADLVQIAPEDFSKESFVAIEDNINAKYANKVVQKVGLFICLWDVTWTSEGQIG 60
Query: 61 PGEGASTHTVKFRLVVFRPFVGEIIAAKLKESDANGLRLSLGFFEDIYVPSHLLPSPSRS 120
G G V+F +VVFRPF E++ A++ G+ L + FF DI+VP+ LP S
Sbjct: 61 HGTGLVNVNVEFEMVVFRPFKHEVMLARITHQTEEGIYLGMDFFNDIFVPAAELPDNSE- 119
Query: 121 EPDPYGRYEVKWIWEFGDTKYVIDGLDEIKFRVLSVNY----PSIPIEQAEGSKPFA-PM 175
+ E W+W+ + D + ++FRV+ + P+ P+E + + P
Sbjct: 120 ----FDTTEKVWVWKEEGQELYYDNNEMVRFRVIGEEWHDQTPTGPVEVDQAANQLLPPY 175
Query: 176 VINGSIDYDGLGPVSWW 192
I GS+ GLG WW
Sbjct: 176 KITGSMKEGGLGCCLWW 192
>gi|432870761|ref|XP_004071835.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC8-like
isoform 2 [Oryzias latipes]
Length = 185
Score = 92.0 bits (227), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 63/218 (28%), Positives = 99/218 (45%), Gaps = 61/218 (27%)
Query: 1 MFYLSKIEHTLRLPPHLLRLPLNEAIKLELENVFLDKVIANLGLCISIYDIKEIEGGFVY 60
MF L ++ T+R+PP LNEA+ EL +KV+ N+GLCI +YDI ++E +++
Sbjct: 1 MFVLVEMVDTVRIPPWCFHRQLNEAVAEELNKKLANKVVFNVGLCICLYDITKLEDSYIF 60
Query: 61 PGEGASTHTVKFRLVVFRPFVGEIIAAKLKESDANGLRLSLGFFEDIYVPSHLLPSPSRS 120
PG+GAS HT ++++GFF+DI +P L P++
Sbjct: 61 PGDGAS-HT----------------------------KVTMGFFDDILIPPESLQQPAK- 90
Query: 121 EPDPYGRYEVKWIWEF----GDTKYVIDGLDEIKFRVLSVNY------------------ 158
+ E W+WE+ G +D +EI+FRV +
Sbjct: 91 ----FDEAEQVWLWEYETDEGAHDLYMDQGEEIRFRVTDEVFVDTSPTGPAAATPDNAAQ 146
Query: 159 ----PSIPIEQAEGSKPFAPMVINGSIDYDGLGPVSWW 192
+ P E++ K AP + G+I GLG +SWW
Sbjct: 147 PGQSTAAPAEESTEKKE-APYTLIGTICEPGLGLLSWW 183
>gi|397638385|gb|EJK73047.1| hypothetical protein THAOC_05356 [Thalassiosira oceanica]
Length = 314
Score = 92.0 bits (227), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 46/136 (33%), Positives = 83/136 (61%), Gaps = 7/136 (5%)
Query: 1 MFYLSKIEHTLRLPPHLLRLPLNEAIKLELENVFLDKVIANLGLCISIYDIK-EIEGGFV 59
MF L+ + T+R+PP LL P +++ E+E + +K+I ++GL I Y EI G +
Sbjct: 1 MFVLTLMADTIRIPPQLLSSPTATSVQTEIEKRYPNKIIMDVGLVICPYGPPLEIGHGML 60
Query: 60 YPGEGASTHTVKFRLVVFRPFVGEIIAAKLKESDANGLRLSL-GFFEDIYVPSHLLPSPS 118
P +G + H V F+ +VFRPFVGE++ + ES+ G+++S+ GFF+ +++P++ + +PS
Sbjct: 61 VPADGGAHHQVIFQCLVFRPFVGEVLIGTVTESNEAGIKVSVGGFFDYVFIPAYWMLNPS 120
Query: 119 RSEPDPYGRYEVKWIW 134
+ + W+W
Sbjct: 121 K-----FDASTGLWVW 131
>gi|294948290|ref|XP_002785689.1| RNA polymerase Rpb7, putative [Perkinsus marinus ATCC 50983]
gi|239899712|gb|EER17485.1| RNA polymerase Rpb7, putative [Perkinsus marinus ATCC 50983]
Length = 213
Score = 91.7 bits (226), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 65/216 (30%), Positives = 105/216 (48%), Gaps = 30/216 (13%)
Query: 1 MFYLSKIEHTLRLPPHLLRLPLN-EAIKLELENVFLDKVIANLGLCISIYDIKEIEGGFV 59
MF ++ + T+ LPP + I+ ++ ++D+VI ++GL +++YD+ I ++
Sbjct: 1 MFIITVVSDTIVLPPDEFEPGKHIPHIRRRIQEKYVDRVIPDVGLVVALYDVIRITDAYI 60
Query: 60 YPGE-----GASTHTVKFRLVVFRPFVGEIIAAKLKESDANGLRLSLG-FFEDIYVPSHL 113
+P + G + V FRL VFRP VGE I + S A GL + LG +F+D+++P
Sbjct: 61 HPADFHHQKGGAFCKVAFRLCVFRPMVGETIVGTVDRSTATGLYVKLGSWFKDVHIPYAD 120
Query: 114 LPSPSRSEPDPYGRYEVKWIWEF-----GDTKYVIDGLDEIKFRVLSV-------NYPSI 161
L P Y WIW++ D+ + G EI F V ++ N ++
Sbjct: 121 LKDPCL-----YDEQTKLWIWQYKREDATDSFFYRPGA-EICFSVKAIVFNQRQENKSTL 174
Query: 162 PIEQAEG-----SKPFAPMVINGSIDYDGLGPVSWW 192
AE S P PM + GS+ DG+G SWW
Sbjct: 175 AQAVAEKDSKGPSAPLPPMQVLGSVAGDGMGLTSWW 210
>gi|68070099|ref|XP_676961.1| hypothetical protein [Plasmodium berghei strain ANKA]
gi|56496887|emb|CAH99916.1| conserved hypothetical protein [Plasmodium berghei]
Length = 162
Score = 89.7 bits (221), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 57/167 (34%), Positives = 82/167 (49%), Gaps = 7/167 (4%)
Query: 26 IKLELENVFLDKVIANLGLCISIYDIKEIEGGFVYPGEGASTHTVKFRLVVFRPFVGEII 85
I+ L ++DKV+ N GLC+ +YDI EI+ + G G V FRLV F P+ EII
Sbjct: 2 IEFLLRTKYVDKVVQNAGLCVGLYDILEIKNKEILKGCGTIRLNVIFRLVFFHPYENEII 61
Query: 86 AAKLKESDANGLRLSLGFFEDIYVPSHLLPSPSRSEPDPYGRYEVKWIWEFGDTKYVIDG 145
+K SD G+ +SLGFFE+ ++L EP + + +W W + K
Sbjct: 62 EGYVKSSDHKGIIVSLGFFENRVNRAYL------KEPKAFDDEKNEWYWAYEGIKCFYTK 115
Query: 146 LDEIKFRVLSVNYPSIPIEQAEGSKPFAPMVINGSIDYDGLGPVSWW 192
+ I+ R+L Y S P E E + + S+ DGL V WW
Sbjct: 116 NEPIRIRILET-YFSDPNELNEDESIPSMSITVRSVQQDGLRLVKWW 161
>gi|328853074|gb|EGG02215.1| hypothetical protein MELLADRAFT_72828 [Melampsora larici-populina
98AG31]
Length = 240
Score = 89.7 bits (221), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 45/122 (36%), Positives = 72/122 (59%)
Query: 1 MFYLSKIEHTLRLPPHLLRLPLNEAIKLELENVFLDKVIANLGLCISIYDIKEIEGGFVY 60
MF LS ++ T+R+ + ++ E+ + +KV+ ++GLC+ +++I G V
Sbjct: 1 MFVLSHLKDTIRVLARDFGRDRAKVLEQEINRKYANKVLPDVGLCLCLFNIVSASEGKVL 60
Query: 61 PGEGASTHTVKFRLVVFRPFVGEIIAAKLKESDANGLRLSLGFFEDIYVPSHLLPSPSRS 120
G+G H V+F L VFRPF+GE + +K S G+R+SL FF+DI++P LP PS
Sbjct: 61 YGDGCLYHLVEFTLAVFRPFIGESLVGIVKSSSPAGIRVSLHFFDDIHIPCRSLPFPSAY 120
Query: 121 EP 122
EP
Sbjct: 121 EP 122
>gi|384485222|gb|EIE77402.1| hypothetical protein RO3G_02106 [Rhizopus delemar RA 99-880]
Length = 120
Score = 88.6 bits (218), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 44/119 (36%), Positives = 71/119 (59%)
Query: 1 MFYLSKIEHTLRLPPHLLRLPLNEAIKLELENVFLDKVIANLGLCISIYDIKEIEGGFVY 60
MF LS++E +++ P+ + AI L + +KV+ ++G CI ++DI + GF+
Sbjct: 1 MFVLSEVEDIVKIVPNDFKKEKINAITDVLNEKYANKVVQDVGHCICVHDILNVSEGFIL 60
Query: 61 PGEGASTHTVKFRLVVFRPFVGEIIAAKLKESDANGLRLSLGFFEDIYVPSHLLPSPSR 119
+G S V FRLVVFRPF+GEI+ K+K G+ +++GFF+DI +P L S+
Sbjct: 61 YLDGCSYVKVTFRLVVFRPFIGEILIGKIKSCSPAGVVVTMGFFDDILIPGGALQPGSK 119
>gi|398411157|ref|XP_003856922.1| hypothetical protein MYCGRDRAFT_31431, partial [Zymoseptoria
tritici IPO323]
gi|339476807|gb|EGP91898.1| hypothetical protein MYCGRDRAFT_31431 [Zymoseptoria tritici IPO323]
Length = 223
Score = 87.4 bits (215), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 57/200 (28%), Positives = 91/200 (45%), Gaps = 14/200 (7%)
Query: 7 IEHTLRLPPHLLRLPLNEAIKLELENVFLDKVIANLGLCISIYDIKEIEGGFVYPGEGAS 66
+ +++PP P AI+ + + DKVI +GLC+ + + G + G G
Sbjct: 2 VADVVQIPPKDFSKPSFRAIEDFINTKYADKVIHKVGLCLGFHSLVSTSEGLIGHGTGIV 61
Query: 67 THTVKFRLVVFRPFVGEIIAAKLKESDANGLRLSLGFFEDIYVPSHLLPSPSRSEPDPYG 126
V FRL+VFRPF GEII A + +S+ G+ LS+ F+ED+ VP L + + D G
Sbjct: 62 NVNVDFRLIVFRPFKGEIIRATITQSNPTGIYLSVDFYEDLVVPPETLFDNTSWDKDESG 121
Query: 127 RYEVKW---IWEFGDTKYVIDGLDEIKFRVLSVNYPSIP-----------IEQAEGSKPF 172
+ W E ++ D + R+ + I E+ + ++
Sbjct: 122 TWAFVWRAPNEEGEFNEFFFDNAESCLMRIEEEQWHDISPDALRSQAYETQEEEDQARRM 181
Query: 173 APMVINGSIDYDGLGPVSWW 192
P +I GS+ GLGP WW
Sbjct: 182 PPYLIRGSMMNSGLGPELWW 201
>gi|358054091|dbj|GAA99767.1| hypothetical protein E5Q_06470 [Mixia osmundae IAM 14324]
Length = 199
Score = 86.3 bits (212), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 58/191 (30%), Positives = 94/191 (49%), Gaps = 24/191 (12%)
Query: 25 AIKLELENVFLDKVIANLGLCISIYDIKEIEGGFVYPGEGASTHTVKFRLVVFRPFVGEI 84
AI E+ + + V+A LGLC+++Y+I + G V G+G + + F LVVF+P VGE+
Sbjct: 8 AITYEINRKYANNVVAGLGLCVTLYNIVDCSEGMVLYGDGKLYYKLVFDLVVFKPQVGEM 67
Query: 85 IAAKLKESDANGLRLSLGFFEDIYVPSHLLPSPSR-SEPDPYGRYEVKWIW----EFGDT 139
+ ++ A G+R+SLGFF++I +P L+ + P+G Y +++ E
Sbjct: 68 LVGQVLSQSAEGIRVSLGFFDEIEIPKSLMMNNMNFDSTTPHGNYMLEYSNDEEPETTTK 127
Query: 140 KYVIDGLDEIKFRVLS--------------VNYPSIPIEQAEGSKP--FAPM--VINGSI 181
YV+ G + F+V VN +I + G AP + GS
Sbjct: 128 LYVLKG-EAFAFKVNREIFEETGPKVAPKLVNAGNIGTSGSRGGAQDLIAPSGYKLQGSC 186
Query: 182 DYDGLGPVSWW 192
D +G GP+ WW
Sbjct: 187 DEEGTGPLRWW 197
>gi|47189269|emb|CAF87239.1| unnamed protein product [Tetraodon nigroviridis]
Length = 119
Score = 85.5 bits (210), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 36/83 (43%), Positives = 57/83 (68%)
Query: 37 KVIANLGLCISIYDIKEIEGGFVYPGEGASTHTVKFRLVVFRPFVGEIIAAKLKESDANG 96
+V+ N+GLCI +YDI ++E +++PG+GAS V FR VVF PF+ EI+ K+K G
Sbjct: 1 QVVYNVGLCICLYDITKLEDSYIFPGDGASHTKVHFRYVVFHPFLEEILIGKIKYCSQEG 60
Query: 97 LRLSLGFFEDIYVPSHLLPSPSR 119
+ +++GFF+DI +P L P++
Sbjct: 61 VHVTMGFFDDILIPPESLQQPAK 83
>gi|359479603|ref|XP_003632300.1| PREDICTED: uncharacterized protein LOC100854382 [Vitis vinifera]
gi|297735500|emb|CBI17940.3| unnamed protein product [Vitis vinifera]
Length = 79
Score = 85.1 bits (209), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 39/67 (58%), Positives = 52/67 (77%)
Query: 126 GRYEVKWIWEFGDTKYVIDGLDEIKFRVLSVNYPSIPIEQAEGSKPFAPMVINGSIDYDG 185
R +V WI + + K+ IDG+D+I+F+V SV+Y +P+EQ + SKPFAPMVI GS+DYDG
Sbjct: 13 SRSQVIWIRDNQEQKFPIDGIDKIRFQVQSVSYSPVPVEQPKESKPFAPMVILGSLDYDG 72
Query: 186 LGPVSWW 192
L PVSWW
Sbjct: 73 LSPVSWW 79
>gi|67607603|ref|XP_666822.1| hypothetical protein [Cryptosporidium hominis TU502]
gi|54657887|gb|EAL36594.1| hypothetical protein Chro.10225 [Cryptosporidium hominis]
Length = 200
Score = 85.1 bits (209), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 55/169 (32%), Positives = 92/169 (54%), Gaps = 14/169 (8%)
Query: 26 IKLELENVFLDKVIANLGLCISIYDIKEIEGGFVYPGEGASTHTVKFRLVVFRPFVGEII 85
++ + + +L+KV+ N GL I ++ + EG V F+++ FRP+VGE+I
Sbjct: 43 LRNRINDKYLNKVVKNAGLMIYFVGFDGVDHADIDNDEGGLLFCVTFKMISFRPYVGEVI 102
Query: 86 AAKLKESDANGLRLSLGFFEDIYVPSHLLPSPSRSEPDPYGRYEVKWIWEFGDTK--YVI 143
+ +SD+ GL +SLGFF DI +P + L P + + W W++ + K Y+I
Sbjct: 103 EGVVIDSDSTGLTVSLGFFSDIKIPCNDLREPKSIDSNTK-----IWSWDYENHKLCYLI 157
Query: 144 DGLDEIKFRVLSVNYPSIPIEQAEGSKPFAPMVINGSIDYDGLGPVSWW 192
D I+F+V SV + EQ+ S + +V+ G++ DGLG +SWW
Sbjct: 158 DS--TIRFKVSSVVFN----EQSHDSSVSSMVVV-GNVQNDGLGMISWW 199
>gi|440632844|gb|ELR02763.1| hypothetical protein GMDG_05707 [Geomyces destructans 20631-21]
Length = 207
Score = 85.1 bits (209), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 42/116 (36%), Positives = 65/116 (56%)
Query: 1 MFYLSKIEHTLRLPPHLLRLPLNEAIKLELENVFLDKVIANLGLCISIYDIKEIEGGFVY 60
MF L+KI +++ P P +AI+ + + +KVI +GLCI +YD+ G +
Sbjct: 1 MFILTKISDLVQITPEDFSKPSKQAIEDNINAKYANKVIQKIGLCICLYDLLSSSEGLIG 60
Query: 61 PGEGASTHTVKFRLVVFRPFVGEIIAAKLKESDANGLRLSLGFFEDIYVPSHLLPS 116
G G V+FRLVVFRPF E++ ++ + G+ L FF DI+VP+ LP+
Sbjct: 61 HGTGLVNVNVEFRLVVFRPFRHEVLHGRITSASPEGIHLRTTFFSDIFVPATSLPA 116
>gi|403414624|emb|CCM01324.1| predicted protein [Fibroporia radiculosa]
Length = 199
Score = 84.7 bits (208), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 53/144 (36%), Positives = 76/144 (52%), Gaps = 22/144 (15%)
Query: 69 TVKFRLVVFRPFVGEIIAAKLKESDANGLRLSLGFFEDIYVPSHLLPSPSRSEPDPYGRY 128
V FRL VFRPF E+I AK+K SD +G+RL++GFF+D+YVP LP PS +P+ +
Sbjct: 48 AVIFRLTVFRPFPSEVILAKVKSSDEDGIRLTVGFFDDVYVPLIYLPEPSAFDPNERAHF 107
Query: 129 -----EVKWIWEFGDT----KYVIDGLDEIKFRVLSVNY-----------PSIPIEQAEG 168
E K E D+ + +D + ++ RV + + + QAEG
Sbjct: 108 WLPGAEGKSSHELLDSATADRMYVDTGEVVRVRVEADEFYDDEPGPPKATEGVQQAQAEG 167
Query: 169 SKPFAPMVINGSIDYDGLGPVSWW 192
+P P I SI GLGP++WW
Sbjct: 168 RRP--PYTITCSIAEQGLGPITWW 189
>gi|156063178|ref|XP_001597511.1| hypothetical protein SS1G_01705 [Sclerotinia sclerotiorum 1980]
gi|154697041|gb|EDN96779.1| hypothetical protein SS1G_01705 [Sclerotinia sclerotiorum 1980
UF-70]
Length = 172
Score = 82.0 bits (201), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 57/200 (28%), Positives = 94/200 (47%), Gaps = 37/200 (18%)
Query: 1 MFYLSKIEHTLRLPPHLLRLPLNEAIKLELENVFLDKVIANLGLCISIYDIKEIEGGFVY 60
MF L+KI +++ P L ++AI+ + + +KVI +GL
Sbjct: 1 MFILTKIADLVQIAPQDLGKNASQAIEDNINLKYANKVIQKIGL---------------- 44
Query: 61 PGEGASTHTVKFRLVVFRPFVGEIIAAKLKESDANGLRLSLGFFEDIYVPSHLLPSPSRS 120
+V+FR+VVFRPF EI+ ++ S +G+R+ FF++I+VP+ +LP S
Sbjct: 45 --------SVEFRIVVFRPFKFEIMTGRISSSIESGIRVRTHFFDEIFVPAKMLPDGSH- 95
Query: 121 EPDPYGRYEVKWIWEFGD-TKYVIDGLDEIKFRVLSVNY-------PSIPIEQAEGSKPF 172
+ E ++W+ D T+ D + ++FRV S + P E E
Sbjct: 96 ----FDHNEQVFVWQTEDGTQLFFDNQETVRFRVDSEQWNDQAPLGPDKQDENEESRVVE 151
Query: 173 APMVINGSIDYDGLGPVSWW 192
+P I S++ GLGP WW
Sbjct: 152 SPYKIVASMEEVGLGPCLWW 171
>gi|134116478|ref|XP_773193.1| hypothetical protein CNBJ1880 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|50255814|gb|EAL18546.1| hypothetical protein CNBJ1880 [Cryptococcus neoformans var.
neoformans B-3501A]
Length = 199
Score = 80.5 bits (197), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 59/180 (32%), Positives = 86/180 (47%), Gaps = 24/180 (13%)
Query: 37 KVIANLGLCISIYDIKEIEGGFVYPGEGASTHTVKFRLVVFRPFVGEIIAAKLKESDANG 96
+++ GL +S++DI E G V G G + V FRL++F PFVGE+I ++ +
Sbjct: 8 RLVPEKGLALSVFDILTAEDGKVTWGNGLMYYKVSFRLMLFAPFVGEVIVGRVLSTTKTY 67
Query: 97 LRLSLGFFEDIYVPSHLLPSPSRSEPDPYGRYEVKWIWEFGDT-----------KYVIDG 145
+R+SLGFF+DIY+ LLP S +P + V E T + ID
Sbjct: 68 IRVSLGFFQDIYIVPSLLPPNSAYDPQQKAFFWVAIDDESTLTQEQLLNTVISERLYIDL 127
Query: 146 LDEIKFRVLSVNYPSI-PIEQA----------EGSKPF--APMVINGSIDYDGLGPVSWW 192
+ I+FRV S+ + + P QA EG P A I +I GLG +WW
Sbjct: 128 GEAIRFRVDSIEWQDVRPTPQAMLAEMNGEAVEGKDPIEKAGFKILATIAESGLGVTAWW 187
>gi|405122725|gb|AFR97491.1| hypothetical protein CNAG_04728 [Cryptococcus neoformans var.
grubii H99]
Length = 199
Score = 79.7 bits (195), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 59/180 (32%), Positives = 87/180 (48%), Gaps = 24/180 (13%)
Query: 37 KVIANLGLCISIYDIKEIEGGFVYPGEGASTHTVKFRLVVFRPFVGEIIAAKLKESDANG 96
+++ GL +S++DI E G V G G + V FRL++F PFVGE+I ++ + +
Sbjct: 8 RLVPEKGLALSVFDILTAEDGKVTWGNGLMYYKVSFRLMLFAPFVGEVIVGRVLSTTKSY 67
Query: 97 LRLSLGFFEDIYVPSHLLPSPSRSEPDPYGRYEVKWIWEFGDT-----------KYVIDG 145
+R+SLGFF+DIY+ LLP S +P + V E T + ID
Sbjct: 68 IRVSLGFFQDIYIVPSLLPPNSAYDPQQKAFFWVASDDESTLTQEQLLNTVISERLYIDP 127
Query: 146 LDEIKFRVLSVNYPSI-PIEQA----------EGSKPF--APMVINGSIDYDGLGPVSWW 192
+ I+FRV S+ + + P QA EG P A I +I GLG +WW
Sbjct: 128 GEAIRFRVDSIEWQDVRPTPQAMLAEMNGEAVEGKGPIEKAGFKILATIAESGLGVTAWW 187
>gi|115491011|ref|XP_001210133.1| hypothetical protein ATEG_00047 [Aspergillus terreus NIH2624]
gi|114196993|gb|EAU38693.1| hypothetical protein ATEG_00047 [Aspergillus terreus NIH2624]
Length = 206
Score = 79.0 bits (193), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 51/170 (30%), Positives = 82/170 (48%), Gaps = 22/170 (12%)
Query: 1 MFYLSKIEHTLRLPPHLLRLPLNEAIKLELENVFLDKVIANLGLCISIYDIKEIEGGFVY 60
MF L+ + +++ P + AI+ + + +KVI +GLCI YD+ E G +
Sbjct: 1 MFILTTLSDLIQIAPEDFSKYSSVAIEDNINEKYANKVIQKIGLCIGFYDLLESSDGLIG 60
Query: 61 PGEGASTHTVKFRLVVFRPFVGEIIAAKLKESDANGLR----------------LSLGFF 104
G G VKFRL+VFRPF GEI+ K+ + +G++ + + FF
Sbjct: 61 HGTGLVNVNVKFRLIVFRPFKGEIMLGKISSATEHGIKSMSLPAATTVTPLSIPVGVEFF 120
Query: 105 EDIYVPSHLLPSPSRSEPDPYGRYEVKWIWEFGD-TKYVIDGLDEIKFRV 153
DI VP +LL +R + + WIWE D + + D + ++ RV
Sbjct: 121 NDILVPPNLLLDGAR-----FDYADQVWIWENEDGSTFYFDVGEIVRLRV 165
>gi|321262911|ref|XP_003196174.1| hypothetical protein CGB_I2230C [Cryptococcus gattii WM276]
gi|317462649|gb|ADV24387.1| hypothetical protein CNJ01580 [Cryptococcus gattii WM276]
Length = 198
Score = 78.2 bits (191), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 55/173 (31%), Positives = 85/173 (49%), Gaps = 19/173 (10%)
Query: 34 FLDKVIANLGLCISIYDIKEIEGGFVYPGEGASTHTVKFRLVVFRPFVGEIIAAKLKESD 93
+ +K++ GL +S++DI E G V G G + V FRL++F PFVGE+I ++ +
Sbjct: 19 YANKLVPEKGLALSVFDILTAEDGKVTWGNGLMYYKVSFRLMLFAPFVGEVIVGRVLSTT 78
Query: 94 ANGLRLSLGFFEDIYVPSHLLPSPSRSEPDPYGRYEVKWIWEFGDTKYVIDGLDEIKFRV 153
+ +R+SLGFF+DIY+ LLP S +P + + W GD + + + V
Sbjct: 79 KSYIRVSLGFFQDIYIVPSLLPPNSAYDPQ-----QKAFFWVAGDDESTLTQEQLLNTVV 133
Query: 154 L-SVNYPSI-PIEQA----------EGSKPF--APMVINGSIDYDGLGPVSWW 192
S+ + + P QA EG P A I +I GLG +WW
Sbjct: 134 SDSIEWQDVRPTPQAMLAEMNGEAVEGKDPIEKAGFKILATIAESGLGVTAWW 186
>gi|342873576|gb|EGU75740.1| hypothetical protein FOXB_13759 [Fusarium oxysporum Fo5176]
Length = 138
Score = 77.0 bits (188), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 44/128 (34%), Positives = 65/128 (50%), Gaps = 10/128 (7%)
Query: 69 TVKFRLVVFRPFVGEIIAAKLKESDANGLRLSLGFFEDIYVPSHLLPSPSRSEPDPYGRY 128
+FR+VVFRPF GE++ +++ S G+ L FF+DI+VP LP E Y
Sbjct: 14 AAEFRMVVFRPFKGEVMIGRIRSSTPAGINLRTDFFDDIFVPFEELP-----EGAEYNHS 68
Query: 129 EVKWIWEFGDTKYVIDGLDEIKFRVLSVNY----PSIPIEQAEGSKPFAPMVINGSIDYD 184
E WIW + + D + ++F+V+ + P+ P QAE S P I S+ +
Sbjct: 69 EQLWIWNLDEDRLFYDNHEMVRFQVIDEEWHDQAPAGPT-QAEDSPLKTPYRIKASMAAE 127
Query: 185 GLGPVSWW 192
GLG WW
Sbjct: 128 GLGVCLWW 135
>gi|294954871|ref|XP_002788336.1| RPB7 subunit of the RNA polymerase III, OB fold, putative
[Perkinsus marinus ATCC 50983]
gi|239903648|gb|EER20132.1| RPB7 subunit of the RNA polymerase III, OB fold, putative
[Perkinsus marinus ATCC 50983]
Length = 189
Score = 76.6 bits (187), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 45/146 (30%), Positives = 76/146 (52%), Gaps = 18/146 (12%)
Query: 1 MFYLSKIEHTLRLPPHLL----RLPLNEAIKLELENVFLDKVIANLGLCISIYDIKEIEG 56
MF ++ + T+ LPP +P I+ ++ ++D+VI ++GL +++YD+ I
Sbjct: 1 MFIITVVSDTIVLPPDEFEPGKHIP---HIRRRIQEKYVDRVIPDVGLVVALYDVIRITD 57
Query: 57 GFVYPGE-----GASTHTVKFRLVVFRPFVGEIIAAKLKESDANGLRLSLG-FFEDIYVP 110
+++P + G + V FRL VFRP VGE I + S A GL + LG +F+D+++P
Sbjct: 58 AYIHPADFHHQKGGAFCKVAFRLCVFRPMVGETIVGTVDRSTATGLYVKLGSWFKDVHIP 117
Query: 111 SHLLPSPSRSEPDPYGRYEVKWIWEF 136
L P Y WIW++
Sbjct: 118 YADLKDPCL-----YDEQTKLWIWQY 138
>gi|123400742|ref|XP_001301713.1| RNA polymerase Rpb7, N-terminal domain containing protein
[Trichomonas vaginalis G3]
gi|121882930|gb|EAX88783.1| RNA polymerase Rpb7, N-terminal domain containing protein
[Trichomonas vaginalis G3]
Length = 206
Score = 76.6 bits (187), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 63/212 (29%), Positives = 99/212 (46%), Gaps = 36/212 (16%)
Query: 1 MFYLSKIEHTLRLPPHLLRL-PLNEAIKLE-------LENVFLDKVIANLGLCISIYDIK 52
MF + +E L LP H +++ P + I ++ + + + D V+ N GL I ++DI
Sbjct: 1 MFEVILVEDKLPLPYHHMKMDPSTQEITVDPQVLCDIITHKYNDTVLPNYGLLIDLFDIV 60
Query: 53 EIEGGFVYPGEGASTHTVKFRLVVFRPFVGEIIAAKLKESDANGLRLSLGFFEDIYVPSH 112
+ P + FR +VF P +G + AK+ ++ +G+ L + FF DI++P
Sbjct: 61 KAYECKSLPDIPVAYVRCVFRYIVFNPPIGSVWTAKISGTNEDGISLQMSFFNDIWIPWA 120
Query: 113 LLPSPSRSEPDPYGRYEVKW-IWEF-----------GDTKYVIDGLDEIKFRVLSVNYPS 160
LP + YE K W F Y +GL +KFRV V Y
Sbjct: 121 NLPENT--------EYEAKTNTWRFIPNPDDDEDAEEAEYYFSEGL-IVKFRVCEVKYN- 170
Query: 161 IPIEQAEGSKPFAPMVINGSIDYDGLGPVSWW 192
P E+A MVI+GS+ +GLGP++WW
Sbjct: 171 -PDEKAGQL-----MVISGSMSTNGLGPIAWW 196
>gi|148672600|gb|EDL04547.1| polymerase (RNA) III (DNA directed) polypeptide H, isoform CRA_a
[Mus musculus]
Length = 148
Score = 75.1 bits (183), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 49/144 (34%), Positives = 72/144 (50%), Gaps = 19/144 (13%)
Query: 63 EGASTHTVKFRLVVFRPFVGEIIAAKLKESDANGLRLSLGFFEDIYVPSHLLPSPSRSEP 122
E + + FR VVF PF+ EI+ K+K G+ +SLGFF+DI +P L P++
Sbjct: 7 EHPTPKVIHFRYVVFHPFLDEILIGKIKGCSPEGVHVSLGFFDDILIPPESLQQPAK--- 63
Query: 123 DPYGRYEVKWIWEF----GDTKYVIDGLDEIKFRVLSVNY----PSIPIEQAEGS----- 169
+ E W+WE+ G +D +EI+FRV+ ++ P+ P S
Sbjct: 64 --FDEAEQVWVWEYETEEGAHDLYMDTGEEIRFRVVDESFVDTSPTGPSSAEAASSSEEL 121
Query: 170 -KPFAPMVINGSIDYDGLGPVSWW 192
K AP + GSI GLG +SWW
Sbjct: 122 PKKEAPYTLVGSISEPGLGLLSWW 145
>gi|403367976|gb|EJY83816.1| DNA-directed RNA polymerase, subunit E' [Oxytricha trifallax]
Length = 215
Score = 74.3 bits (181), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 66/227 (29%), Positives = 95/227 (41%), Gaps = 47/227 (20%)
Query: 1 MFYLSKIEHTLRLPPHLL---RLPLNEAIKLELENVFLDKVIANLGLCISIYDIKEIEGG 57
MF L I + L P L L L IK L L+KV+AN G+C++I IK +E
Sbjct: 1 MFELYTIVDEVILQPGELSDFNLTLENKIKARL----LNKVLANEGICVAIKSIKVLEK- 55
Query: 58 FVYPGEGASTHTVKFRLVVFRPFVGEIIAAKLKESDANGLRLSLGFFEDIYVPSHLLPSP 117
+ GEG+ V+ LV+FRP V EI+ AK+ L+ G F + +PS
Sbjct: 56 IIVVGEGSVQCKVETNLVIFRPIVSEILNAKIT------LQNEYGIFGVVGCAPVFIPSE 109
Query: 118 SRSEPDPYGRYEVKWIWEFGDTK-------YVIDGLDEIKFRVLSVNYP----------- 159
+ +P Y E KW+W + D Y DG I+FRV +N+
Sbjct: 110 NLIKPSFYDTLEKKWLWRYYDESLKQDHDMYFQDG-QTIRFRVKELNFTKDYQNRIKQQQ 168
Query: 160 --SIPIEQAEGSKPFAPMVIN------------GSIDYDGLGPVSWW 192
++ + Q + + N GS + LG SWW
Sbjct: 169 NYALQMNQEQNQQAIGDTDQNESGLFIQNHFVVGSCEESCLGMTSWW 215
>gi|58259847|ref|XP_567336.1| hypothetical protein CNJ01580 [Cryptococcus neoformans var.
neoformans JEC21]
gi|57229386|gb|AAW45819.1| hypothetical protein CNJ01580 [Cryptococcus neoformans var.
neoformans JEC21]
Length = 184
Score = 73.6 bits (179), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 51/168 (30%), Positives = 81/168 (48%), Gaps = 15/168 (8%)
Query: 37 KVIANLGLCISIYDIKEIEGGFVYPGEGASTHTVKFRLVVFRPFVGEIIAAKLKESDANG 96
+++ GL +S++DI E G V G G + V FRL++F PFVGE+I ++ +
Sbjct: 8 RLVPEKGLALSVFDILTAEDGKVTWGNGLMYYKVSFRLMLFAPFVGEVIVGRVLSTTKTY 67
Query: 97 LRLSLGFFEDIYVPSHLLPSPSRSEPDPYGRYEVKWIWEFGDTKYVIDGL------DEIK 150
+R+SLGFF+DIY+ LLP S +P + W+ ++ + L D I+
Sbjct: 68 IRVSLGFFQDIYIVPSLLPPNSAYDPQQKAFF---WVAIDDESTLTQEQLLNTVISDSIE 124
Query: 151 FRVL----SVNYPSIPIEQAEGSKPF--APMVINGSIDYDGLGPVSWW 192
++ + + E EG P A I +I GLG +WW
Sbjct: 125 WQDVRPTPQAMLAEMNGEAVEGKDPIEKAGFKILATIAESGLGVTAWW 172
>gi|195998784|ref|XP_002109260.1| hypothetical protein TRIADDRAFT_53108 [Trichoplax adhaerens]
gi|190587384|gb|EDV27426.1| hypothetical protein TRIADDRAFT_53108 [Trichoplax adhaerens]
Length = 160
Score = 73.6 bits (179), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 55/206 (26%), Positives = 91/206 (44%), Gaps = 62/206 (30%)
Query: 1 MFYLSKIEHTLRLPPHLLRLPLNEAIKLELENVFLDKVIANLGLCISIYDIKEIEGGFVY 60
MF L ++ T+R+ PHL RL ++ I+ +L F +KV+ N+GLCI +YDI I +V
Sbjct: 1 MFVLCCMKDTIRIKPHLFRLDIHYVIEEQLNKKFANKVVHNVGLCIGVYDILSISDSYVL 60
Query: 61 PGEGASTHTVKFRLVVFRPFVGEIIAAKLKESDANGLRLSLGFFEDIYVPSHLLPSPSRS 120
PG+G+S + G+ P+ RS
Sbjct: 61 PGDGSS--------------------------------FTSGY-----------PAEDRS 77
Query: 121 EPDPYGRYEVKWIWEFGDTKYV----IDGLDEIKFRVL----SVNYPSIPIEQAEGSK-- 170
+ + E W+WE+ + +D E++FRV+ + + P Q E ++
Sbjct: 78 DYE-----EQLWLWEYQTENRIHDLFMDVNKEVRFRVVDHIFADSAPVSDTAQKEDNENE 132
Query: 171 ----PFAPMVINGSIDYDGLGPVSWW 192
+P I G+I++ GLG V+WW
Sbjct: 133 SYDCSKSPYTIIGTINHPGLGLVTWW 158
>gi|297735503|emb|CBI17943.3| unnamed protein product [Vitis vinifera]
Length = 47
Score = 71.2 bits (173), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 31/47 (65%), Positives = 40/47 (85%)
Query: 146 LDEIKFRVLSVNYPSIPIEQAEGSKPFAPMVINGSIDYDGLGPVSWW 192
+D+I+F+V SV+Y +P+EQ + SKPFAPMVI GS+DYDGL PVSWW
Sbjct: 1 MDKIRFQVQSVSYSPVPVEQPKESKPFAPMVILGSLDYDGLSPVSWW 47
>gi|440297775|gb|ELP90416.1| DNA-directed RNA polymerase III subunit RPC8, putative [Entamoeba
invadens IP1]
Length = 226
Score = 71.2 bits (173), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 56/233 (24%), Positives = 96/233 (41%), Gaps = 50/233 (21%)
Query: 1 MFYLSKIEHTLRLPPHLLR---LPLNEAIKLELENVFLDKVIANLGLCISIYDIKEIEGG 57
M+ +++ + ++ P L L +AI L+ +N K+I G+ +++YDI +I G
Sbjct: 1 MYIVTQFTDSFKVIPEKLNHVIACLIDAINLKYQN----KMIEGKGIGVTLYDIIKISDG 56
Query: 58 FVYPGEGASTHTVKFRLVVFRPFVGEIIAAKLKESDANGLRLSLGFFEDIYVPSHLLPSP 117
+ G G + + F VVF PFV E+I K+ S A G++++L F + I++ P
Sbjct: 57 VIVNGTGNVFYDITFNFVVFSPFVNELIQGKVLRSLATGIQVTLDFTDSIFIDQCYFPPN 116
Query: 118 SRSEPDPYGRYEVKWIWEFGDTKYVIDGLDEIKFRVLSVNY---------PSIPIEQAEG 168
+ D E W W + TK + I+F+V V P++ ++Q
Sbjct: 117 CDFDED-----EQLWYWSYNGTKLYMYINTPIRFKVHHVVMKKQESIKPAPALTVQQIAK 171
Query: 169 SKPF-----------------------------APMVINGSIDYDGLGPVSWW 192
P+ + G I+ GLG SWW
Sbjct: 172 ENEDKEKQKKEKKEERVKKIEEKMEEEVENEDKCPLKVYGRINESGLGLTSWW 224
>gi|15920582|ref|NP_376251.1| DNA-directed RNA polymerase subunit E' [Sulfolobus tokodaii str. 7]
gi|15621365|dbj|BAB65360.1| DNA-directed RNA polymerase subunit E' [Sulfolobus tokodaii str. 7]
Length = 183
Score = 69.3 bits (168), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 43/157 (27%), Positives = 80/157 (50%), Gaps = 7/157 (4%)
Query: 1 MFYLSKIEHTLRLPPHLLRLPLNEAIKLELENVFLDKVIANLGLCISIYDIKEIEGGFVY 60
MF L K + +R+PP PL+E L + +K+I +LGL +++ D K E G++
Sbjct: 1 MFKLIKAKGIIRIPPEYFGQPLDEIALQILRQEYQEKMIKDLGLVLAVLDAKVSEEGYII 60
Query: 61 PGEGASTHTVKFRLVVFRPFVGEIIAAKLKESDANGLRLSLGFFEDIYVPSHLLPSPSRS 120
G+GA+ H V F ++ F P + E++ ++ + D G+ +++G P L S+
Sbjct: 61 FGDGATYHEVSFEMLAFVPIIQEVVEGEVNQVDNYGVYVNIG-------PVDGLAHISQI 113
Query: 121 EPDPYGRYEVKWIWEFGDTKYVIDGLDEIKFRVLSVN 157
D + + I +K +I D ++ R++SV+
Sbjct: 114 TDDNLKFDQNRGILIGERSKKIIQKGDRVRARIISVS 150
>gi|429327460|gb|AFZ79220.1| hypothetical protein BEWA_020670 [Babesia equi]
Length = 179
Score = 68.6 bits (166), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 44/159 (27%), Positives = 78/159 (49%), Gaps = 8/159 (5%)
Query: 22 LNEAIKLELE---NVFLDKVIANLGLCISIYDIKEIEGGFVYPGEGASTHTVKFRLVVFR 78
+N++ K+ LE N ++D++I GLCI + D + P EG + + FRL+VF
Sbjct: 19 INDSNKILLEKLANKYIDRIIFGTGLCILLDDNLLKCEPRILPSEGQAHYKTHFRLLVFS 78
Query: 79 PFVGEIIAAKLKESDANGLRLSLGFFEDIYVPSHLLPSPSRSEPDPYGRYEVKWIWEFGD 138
P + +I+ ++ + D+ + LSLGFF DI V + LP R Y + W
Sbjct: 79 PNINQILKGQIIDCDSESITLSLGFFSDIRVITSTLPPEYR-----YDKNAKCWSKITDS 133
Query: 139 TKYVIDGLDEIKFRVLSVNYPSIPIEQAEGSKPFAPMVI 177
++ + D + FRV+ + Y P + + P+++
Sbjct: 134 SRKIYRLNDIVDFRVVDIIYNRTPEQTGNTTAKQLPVML 172
>gi|240102556|ref|YP_002958865.1| DNA-directed RNA polymerase subunit E' [Thermococcus gammatolerans
EJ3]
gi|239910110|gb|ACS33001.1| DNA-directed RNA polymerase subunit E' (rpoE1) [Thermococcus
gammatolerans EJ3]
Length = 186
Score = 67.8 bits (164), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 47/192 (24%), Positives = 96/192 (50%), Gaps = 18/192 (9%)
Query: 1 MFYLSKIEHTLRLPPHLLRLPLNEAIKLELENVFLDKVIANLGLCISIYDIKEIEGGFVY 60
M+ L K++ +R+PP + + EA KL L + + G+ +++ D++E+ G +
Sbjct: 1 MYKLLKVKDVVRIPPRMFTMDPKEAAKLVLRGTYEGIYDRDEGVVLAVLDVEEVSEGVIV 60
Query: 61 PGEGASTHTVKFRLVVFRPFVGEIIAAKLKESDANGLRLSLGFFEDIYVPSHLLPSPSRS 120
PG+GA+ H V F ++V++PF+ E++ ++ + G + +G + + S L+
Sbjct: 61 PGDGATYHEVVFNVLVWQPFMHEVVEGEVIDVAPYGAFVRIGPMDGLVHISQLM------ 114
Query: 121 EPDPYGRYEVKWIWEFG-DTKYVIDGLDEIKFRVLSVNYPSIPIEQAEGSKPFAPMVING 179
D Y ++ K G +TK ++ DE++ RV++++ S I + + I
Sbjct: 115 --DDYVVFDEKNKQFLGKETKRILKLGDEVRARVIAISVKSRVIRENK---------IGL 163
Query: 180 SIDYDGLGPVSW 191
++ GLG W
Sbjct: 164 TMRQPGLGKFEW 175
>gi|223479016|ref|YP_002582922.1| DNA-directed RNA polymerase subunit E' [Thermococcus sp. AM4]
gi|214034242|gb|EEB75068.1| DNA-directed RNA polymerase subunit E' [Thermococcus sp. AM4]
Length = 186
Score = 67.8 bits (164), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 47/192 (24%), Positives = 96/192 (50%), Gaps = 18/192 (9%)
Query: 1 MFYLSKIEHTLRLPPHLLRLPLNEAIKLELENVFLDKVIANLGLCISIYDIKEIEGGFVY 60
M+ L K++ +R+PP + + EA KL L + + G+ +++ D++E+ G +
Sbjct: 1 MYKLLKVKDVVRIPPRMFTMDPREAAKLVLRETYEGIYDRDEGVVLAVLDVEEVSEGVIV 60
Query: 61 PGEGASTHTVKFRLVVFRPFVGEIIAAKLKESDANGLRLSLGFFEDIYVPSHLLPSPSRS 120
PG+GA+ H V F ++V++PF+ E++ ++ + G + +G + + S L+
Sbjct: 61 PGDGATYHEVVFNVLVWQPFMHEVVEGEVIDVAPYGAFVRIGPMDGLVHISQLM------ 114
Query: 121 EPDPYGRYEVKWIWEFG-DTKYVIDGLDEIKFRVLSVNYPSIPIEQAEGSKPFAPMVING 179
D Y ++ K G +TK ++ DE++ RV++++ S I + + I
Sbjct: 115 --DDYVVFDEKNKQFLGKETKRILKLGDEVRARVIAISVKSRVIRENK---------IGL 163
Query: 180 SIDYDGLGPVSW 191
++ GLG W
Sbjct: 164 TMRQPGLGKFEW 175
>gi|125777779|ref|XP_001359725.1| GA16051 [Drosophila pseudoobscura pseudoobscura]
gi|194767707|ref|XP_001965956.1| GF11824 [Drosophila ananassae]
gi|194900932|ref|XP_001980009.1| GG20814 [Drosophila erecta]
gi|195157158|ref|XP_002019463.1| GL12210 [Drosophila persimilis]
gi|195444928|ref|XP_002070093.1| GK11212 [Drosophila willistoni]
gi|195501415|ref|XP_002097786.1| GE26402 [Drosophila yakuba]
gi|198477563|ref|XP_002136553.1| GA27654 [Drosophila pseudoobscura pseudoobscura]
gi|54639475|gb|EAL28877.1| GA16051 [Drosophila pseudoobscura pseudoobscura]
gi|190619799|gb|EDV35323.1| GF11824 [Drosophila ananassae]
gi|190651712|gb|EDV48967.1| GG20814 [Drosophila erecta]
gi|194116054|gb|EDW38097.1| GL12210 [Drosophila persimilis]
gi|194166178|gb|EDW81079.1| GK11212 [Drosophila willistoni]
gi|194183887|gb|EDW97498.1| GE26402 [Drosophila yakuba]
gi|198142841|gb|EDY71554.1| GA27654 [Drosophila pseudoobscura pseudoobscura]
Length = 173
Score = 66.6 bits (161), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 42/161 (26%), Positives = 75/161 (46%), Gaps = 14/161 (8%)
Query: 1 MFYLSKIEHTLRLPPHLLRLPLNEAIKLELENVFLDKVIANLGLCISIYDIKEIEGGFVY 60
MFY +EH + L P L E +K +L + G I++ I +I G +
Sbjct: 1 MFYHISLEHEILLHPRYFGPQLLETVKQKLYSEVEGTCTGKYGFVIAVTTIDQIGSGVIQ 60
Query: 61 PGEGASTHTVKFRLVVFRPFVGEIIAAKLKESDANGLRLSLG----FFEDIYVPSHLLPS 116
PG+G + VK++ +VFRPF GE++ A +K+ + G+ +G F +P+ +
Sbjct: 61 PGQGFVVYPVKYKAIVFRPFKGEVLDAVVKQINKVGMFAEIGPLSCFISHHSIPADMQFC 120
Query: 117 PSRSEPDPYGRYEVKWIWEFGDTKYVIDGLDEIKFRVLSVN 157
P+ + P ++ D VI G D+I+ +++
Sbjct: 121 PNGNPP----------CYKSKDEDVVISGEDKIRLKIVGTR 151
>gi|321461059|gb|EFX72094.1| hypothetical protein DAPPUDRAFT_308561 [Daphnia pulex]
Length = 172
Score = 66.6 bits (161), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 42/163 (25%), Positives = 75/163 (46%), Gaps = 6/163 (3%)
Query: 1 MFYLSKIEHTLRLPPHLLRLPLNEAIKLELENVFLDKVIANLGLCISIYDIKEIEGGFVY 60
MFY +EH + L P L E +K +L G I++ I I G +
Sbjct: 1 MFYHIALEHEILLHPRYFGPQLMETVKQKLFTEVEGTCTGKYGFVIAVTTIDNIGAGIIQ 60
Query: 61 PGEGASTHTVKFRLVVFRPFVGEIIAAKLKESDANGLRLSLGFFEDIYVPSHLLPSPSRS 120
PG+G + VK++ +VFRPF G+++ A + + + GL +G ++ H +PS +
Sbjct: 61 PGQGFVVYPVKYKAIVFRPFKGQVLDAVVTQVNKVGLFTEIGPLS-CFISRHSIPSDMQF 119
Query: 121 EPDPYGRYEVKWIWEFGDTKYVIDGLDEIKFRVLSVNYPSIPI 163
+P+ ++ D VI DEI+ +++ + + I
Sbjct: 120 DPN-----STPPCYKTQDEDVVIQQDDEIRIKIVGLRVDATDI 157
>gi|167385494|ref|XP_001737370.1| DNA-directed RNA polymerase III subunit RPC8 [Entamoeba dispar
SAW760]
gi|165899852|gb|EDR26345.1| DNA-directed RNA polymerase III subunit RPC8, putative [Entamoeba
dispar SAW760]
Length = 236
Score = 66.2 bits (160), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 41/156 (26%), Positives = 79/156 (50%), Gaps = 6/156 (3%)
Query: 1 MFYLSKIEHTLRLPPHLLRLPLNEAIKLELENVFLDKVIANLGLCISIYDIKEIEGGFVY 60
M+ +S+ + ++PP+ L L I + + + +K+I G+ +++YDI + +
Sbjct: 1 MYIISQFNDSFKVPPNKLEHILVSIID-SINSKYQNKMIEGKGIGVTLYDIVSMTAPTIA 59
Query: 61 PGEGASTHTVKFRLVVFRPFVGEIIAAKLKESDANGLRLSLGFFEDIYVPSHLLPSPSRS 120
G G + V F LV+F PF GE+I ++ S +G++++L F + +++ P+ S
Sbjct: 60 IGTGDVYYEVVFNLVIFSPFQGELIEGRVLRSLPSGIQVTLNFTDSVFIDQCYFPANSDF 119
Query: 121 EPDPYGRYEVKWIWEFGDTKYVIDGLDEIKFRVLSV 156
+ D E W W + TK + I+F+V V
Sbjct: 120 DED-----EQLWYWNYDGTKLPLYINSTIRFKVHHV 150
>gi|126465733|ref|YP_001040842.1| DNA-directed RNA polymerase subunit E' [Staphylothermus marinus F1]
gi|126014556|gb|ABN69934.1| DNA-directed RNA polymerase, subunit E' [Staphylothermus marinus
F1]
Length = 185
Score = 66.2 bits (160), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 32/102 (31%), Positives = 56/102 (54%)
Query: 1 MFYLSKIEHTLRLPPHLLRLPLNEAIKLELENVFLDKVIANLGLCISIYDIKEIEGGFVY 60
++ L +I +R+PP PL EA EL + + NLG+ +++ D+K G V
Sbjct: 2 VYRLYRIRDVVRIPPEKFNKPLEEAAWEELRQSYEGMITKNLGIIVTVLDVKVDPQGKVI 61
Query: 61 PGEGASTHTVKFRLVVFRPFVGEIIAAKLKESDANGLRLSLG 102
PG+GA+ H +F ++ F PF+ E++ ++ A+G + LG
Sbjct: 62 PGDGATYHKAEFTVLAFYPFIKEVVEGRINTVLAHGAFVDLG 103
>gi|449328875|gb|AGE95151.1| DNA-directed RNA polymerase III 25kDa polypeptide [Encephalitozoon
cuniculi]
Length = 176
Score = 65.5 bits (158), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 49/194 (25%), Positives = 94/194 (48%), Gaps = 21/194 (10%)
Query: 1 MFYLSKIEHTLRLPPHLLRLPLNEAIKLELENVFLDKVIANLGLCISIYDIKEIEGGFVY 60
MFY ++IE R+ L L + + EL+ ++ +++ + +CI + + E+ + Y
Sbjct: 1 MFYSAEIED--RVKISLSHLEKEKEVFEELKRKYVGRMLGDCSICILVARVMEV---YEY 55
Query: 61 P-GEGASTHTVKFRLVVFRPFVGEIIAAKLKESDANGLRLSLGFFEDIYVP-SHLLPSPS 118
+ V F +++F+ F GE++ ++ E G+RL + FF +++V S L P+
Sbjct: 56 KVCDEFLIARVWFEVLLFKFFEGEVVCGEILEQSEEGMRLGVSFFSELWVTKSGLPPATE 115
Query: 119 RSEPDPYGRYEVKWIWEFGDTKYVIDGLDEIKFRVLSVNYPSIPIEQAEGSKPFAPMVIN 178
+ + G ++ W+W + +K ++FRVL + EGS V+N
Sbjct: 116 KVYVNDCGEKQLVWVWIYRGSKLYFRRNAHVRFRVL---------DNEEGSST-VLCVLN 165
Query: 179 GSIDYDGLGPVSWW 192
+ GLGP+ WW
Sbjct: 166 EA----GLGPLEWW 175
>gi|212225065|ref|YP_002308301.1| DNA-directed RNA polymerase subunit E' [Thermococcus onnurineus
NA1]
gi|212010022|gb|ACJ17404.1| DNA-directed RNA polymerase, subunit E' [Thermococcus onnurineus
NA1]
Length = 188
Score = 65.5 bits (158), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 48/192 (25%), Positives = 95/192 (49%), Gaps = 18/192 (9%)
Query: 1 MFYLSKIEHTLRLPPHLLRLPLNEAIKLELENVFLDKVIANLGLCISIYDIKEIEGGFVY 60
M+ L KI+ +R+PP + + EA K+ L + + G+ +++ D++EI G V
Sbjct: 1 MYKLLKIKDVVRIPPRMFTMDPKEAAKIVLRETYEGIYDRDEGVILAVMDVEEISQGVVV 60
Query: 61 PGEGASTHTVKFRLVVFRPFVGEIIAAKLKESDANGLRLSLGFFEDIYVPSHLLPSPSRS 120
PG+GA+ H V F ++V++P + E++ ++ + G + +G + + S L+
Sbjct: 61 PGDGATYHEVVFDVLVWKPEMHEVVEGEVIDVAPYGAFIRIGPMDGLVHISQLM------ 114
Query: 121 EPDPYGRYEVKWIWEFG-DTKYVIDGLDEIKFRVLSVNYPSIPIEQAEGSKPFAPMVING 179
D Y ++ K G +TK ++ DE+K R+++++ S I + + I
Sbjct: 115 --DDYVVFDEKNKQFLGKETKRILKLGDEVKARIIAISIKSRVIRENK---------IGL 163
Query: 180 SIDYDGLGPVSW 191
++ GLG W
Sbjct: 164 TMRQPGLGKSDW 175
>gi|124027330|ref|YP_001012650.1| DNA-directed RNA polymerase subunit E' [Hyperthermus butylicus DSM
5456]
gi|123978024|gb|ABM80305.1| DNA-directed RNA polymerase subunit E'' [Hyperthermus butylicus DSM
5456]
Length = 184
Score = 65.5 bits (158), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 47/168 (27%), Positives = 86/168 (51%), Gaps = 17/168 (10%)
Query: 1 MFYLSKIEHTLRLPPHLLRLPLNEAIKLELENVFLDKVIANLGLCISIYDIKEIEGGFVY 60
M+ + ++ +R+PP L + L EA L ++ V +G+ ++I+D+K E G V
Sbjct: 1 MYAIYRVRDVVRIPPSLFGMSLEEAALKVLTEKYVGYVHPEMGVIVAIFDVKVSEEGRVI 60
Query: 61 PGEGASTHTVKFRLVVFRPFVGEIIAAKLKESDANGLRLSLGFFEDI-----YVPSHLLP 115
PG+GA+ H ++ ++ F+P V E++ + + R+SLG E I + H++
Sbjct: 61 PGDGATYHDSEYSVLAFKPIVKEVVEGVVVSIQQSFARISLGPVEGIAHISQVMDEHVIF 120
Query: 116 SPSRSEPDPYGRYEVKWIWEFGDTKYVIDGLDEIKFRVLSVNYPSIPI 163
P R +I E T+ +++ D ++ RV+SV+ PS PI
Sbjct: 121 DPQRR----------AFIGE--RTRRIVEVGDIVRTRVISVSMPSEPI 156
>gi|146304987|ref|YP_001192303.1| DNA-directed RNA polymerase subunit E' [Metallosphaera sedula DSM
5348]
gi|145703237|gb|ABP96379.1| DNA-directed RNA polymerase, subunit E' [Metallosphaera sedula DSM
5348]
Length = 176
Score = 65.5 bits (158), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 42/160 (26%), Positives = 77/160 (48%), Gaps = 7/160 (4%)
Query: 1 MFYLSKIEHTLRLPPHLLRLPLNEAIKLELENVFLDKVIANLGLCISIYDIKEIEGGFVY 60
MF + K +R+PP L PLN+ L N + +++ +LGL +S+ E G +
Sbjct: 1 MFKVVKARGVVRIPPELFGEPLNKTAIEILNNEYKERLFKDLGLVLSVIRADVNEEGMII 60
Query: 61 PGEGASTHTVKFRLVVFRPFVGEIIAAKLKESDANGLRLSLGFFEDIYVPSHLLPSPSRS 120
G+GA+ H V+F L+ F P + E+I + + D G+ +++G P L S+
Sbjct: 61 FGDGATYHEVEFELLTFSPMIQEVIEGDITQVDNYGIYVNMG-------PMDGLVHVSQI 113
Query: 121 EPDPYGRYEVKWIWEFGDTKYVIDGLDEIKFRVLSVNYPS 160
D Y V+ I +K D ++ R+++++ +
Sbjct: 114 GDDNYKFDSVRGILIGEKSKKTFQKGDMVRARIMTISSTA 153
>gi|302667367|ref|XP_003025270.1| hypothetical protein TRV_00586 [Trichophyton verrucosum HKI 0517]
gi|291189368|gb|EFE44659.1| hypothetical protein TRV_00586 [Trichophyton verrucosum HKI 0517]
Length = 253
Score = 65.1 bits (157), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 36/110 (32%), Positives = 56/110 (50%), Gaps = 12/110 (10%)
Query: 1 MFYLSKIEHTLRLPPH----LLRLPLNEAIKLELENVFLD--------KVIANLGLCISI 48
MF L+ I +++ P L + + + I + N +D +VI N+GLCI+
Sbjct: 1 MFILTTISDLVQISPEDFSKLSAVAIEDNINEKYANKVIDADGRLTEVQVIQNVGLCIAF 60
Query: 49 YDIKEIEGGFVYPGEGASTHTVKFRLVVFRPFVGEIIAAKLKESDANGLR 98
YD+ E G + G G VKFR++VFRPF GE+I K+ G++
Sbjct: 61 YDLLESSDGLIGHGTGLVNVNVKFRIIVFRPFKGEVIIGKITNGTEQGIK 110
>gi|119719332|ref|YP_919827.1| DNA-directed RNA polymerase subunit E' [Thermofilum pendens Hrk 5]
gi|119524452|gb|ABL77824.1| DNA-directed RNA polymerase, subunit E' [Thermofilum pendens Hrk 5]
Length = 222
Score = 65.1 bits (157), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 39/116 (33%), Positives = 60/116 (51%)
Query: 1 MFYLSKIEHTLRLPPHLLRLPLNEAIKLELENVFLDKVIANLGLCISIYDIKEIEGGFVY 60
++ L + +R+PP L PL EA L+ F +V+ +GL ISI D + E GF+
Sbjct: 28 VYKLVEFADVIRIPPRLFGQPLKEASLEILKESFEGRVVQGVGLVISILDAEVSEEGFLT 87
Query: 61 PGEGASTHTVKFRLVVFRPFVGEIIAAKLKESDANGLRLSLGFFEDIYVPSHLLPS 116
G+GAS H +F +VF P E++ ++ + GL + LG E S + PS
Sbjct: 88 WGDGASYHEARFTALVFSPVNNEVVEGEVDLVENIGLTVRLGPVEGFVHKSQIYPS 143
>gi|303390246|ref|XP_003073354.1| DNA-directed RNA polymerase subunit E' [Encephalitozoon
intestinalis ATCC 50506]
gi|303302500|gb|ADM11994.1| DNA-directed RNA polymerase subunit E' [Encephalitozoon
intestinalis ATCC 50506]
Length = 177
Score = 65.1 bits (157), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 48/193 (24%), Positives = 91/193 (47%), Gaps = 18/193 (9%)
Query: 1 MFYLSKIEHTLRLPPHLLRLPLNEAIKLELENVFLDKVIANLGLCISIYDIKEIEGGFVY 60
MFY +KIE +++ + E + EL+ ++ + + N +C+ I + ++ VY
Sbjct: 1 MFYSAKIEDKIKISLNSNVEKKREVFE-ELKKKYVGRTLENTSMCVLIERVIDVYEYKVY 59
Query: 61 PGEGASTHTVKFRLVVFRPFVGEIIAAKLKESDANGLRLSLGFFEDIYVPSHLLPSPS-R 119
+ V+F + FR F E+ + E + G+R+ + FF +++ LPS S +
Sbjct: 60 --DEFLVAEVEFEALFFRFFKDEVGCGTILEQNEKGIRIGVSFFHNLWAKKDFLPSVSEK 117
Query: 120 SEPDPYGRYEVKWIWEFGDTKYVIDGLDEIKFRVLSVNYPSIPIEQAEGSKPFAPMVING 179
+ G ++ W+W + + K I+FRVL P E+ + +V+ G
Sbjct: 118 AYVSDCGEKQLAWVWIYRENKLYFRRKSCIRFRVLH------PEEK-------SSLVLCG 164
Query: 180 SIDYDGLGPVSWW 192
++ GLGP+ WW
Sbjct: 165 -LNEAGLGPLEWW 176
>gi|308473109|ref|XP_003098780.1| CRE-RPB-7 protein [Caenorhabditis remanei]
gi|308268076|gb|EFP12029.1| CRE-RPB-7 protein [Caenorhabditis remanei]
Length = 174
Score = 65.1 bits (157), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 38/156 (24%), Positives = 72/156 (46%), Gaps = 6/156 (3%)
Query: 1 MFYLSKIEHTLRLPPHLLRLPLNEAIKLELENVFLDKVIANLGLCISIYDIKEIEGGFVY 60
MF+ ++H + L P LNE IK++L N G I++ I I G +
Sbjct: 1 MFFHLSLDHEVCLHPKYFGPNLNETIKMKLFNEVEGTCTGKYGFVIAVTTIDTIGHGLIQ 60
Query: 61 PGEGASTHTVKFRLVVFRPFVGEIIAAKLKESDANGLRLSLGFFEDIYVPSHLLPSPSRS 120
PG G + V+++ +VFRPF G+++ + + + G+ +G ++ H +P
Sbjct: 61 PGRGFVIYPVRYKAIVFRPFKGQVVDGVVTQVNKVGIFCDIGPLS-CFISRHCIPPDMEF 119
Query: 121 EPDPYGRYEVKWIWEFGDTKYVIDGLDEIKFRVLSV 156
+P+ K ++ D +I DEI+ +++
Sbjct: 120 DPN-----SEKPCYKTNDEATIIRNDDEIRVKLIGT 150
>gi|34526255|dbj|BAC85211.1| unnamed protein product [Homo sapiens]
Length = 121
Score = 64.7 bits (156), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 30/69 (43%), Positives = 46/69 (66%), Gaps = 1/69 (1%)
Query: 1 MFYLSKIEHTLRLPPHLLRLPLNEAIKLELENVFLDKVIANLGLCISIYDIKEIEGGFVY 60
MF L ++ T+R+PP LN++I EL +KV+ N+GLCI ++DI ++E +V+
Sbjct: 1 MFVLVEMVDTVRIPPWQFERKLNDSIAEELNKKLANKVVYNVGLCICLFDITKLEDAYVF 60
Query: 61 PGEGASTHT 69
PG+GAS HT
Sbjct: 61 PGDGAS-HT 68
>gi|297527594|ref|YP_003669618.1| DNA-directed RNA polymerase [Staphylothermus hellenicus DSM 12710]
gi|297256510|gb|ADI32719.1| DNA-directed RNA polymerase [Staphylothermus hellenicus DSM 12710]
Length = 185
Score = 64.7 bits (156), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 30/102 (29%), Positives = 55/102 (53%)
Query: 1 MFYLSKIEHTLRLPPHLLRLPLNEAIKLELENVFLDKVIANLGLCISIYDIKEIEGGFVY 60
++ L +I +R+PP PL EA EL + + NLG+ +++ D+ G +
Sbjct: 2 VYRLYRIRDVVRIPPEKFSKPLEEAAWEELRQTYEGMITKNLGIIVTVLDVNVDPQGKII 61
Query: 61 PGEGASTHTVKFRLVVFRPFVGEIIAAKLKESDANGLRLSLG 102
PG+GA+ H +F ++ F PF+ E++ ++ A+G + LG
Sbjct: 62 PGDGATYHKAEFTVLAFYPFIKEVVEGRINTVLAHGAFVDLG 103
>gi|17510349|ref|NP_491093.1| Protein RPB-7 [Caenorhabditis elegans]
gi|351064549|emb|CCD72992.1| Protein RPB-7 [Caenorhabditis elegans]
Length = 197
Score = 64.7 bits (156), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 39/156 (25%), Positives = 72/156 (46%), Gaps = 6/156 (3%)
Query: 1 MFYLSKIEHTLRLPPHLLRLPLNEAIKLELENVFLDKVIANLGLCISIYDIKEIEGGFVY 60
MF+ ++H + L P LNE IK++L N G I++ I I G +
Sbjct: 24 MFFHLSLDHEVCLHPKYFGPNLNETIKMKLFNEVEGTCTGKYGFVIAVTTIDTIGHGLIQ 83
Query: 61 PGEGASTHTVKFRLVVFRPFVGEIIAAKLKESDANGLRLSLGFFEDIYVPSHLLPSPSRS 120
PG G + V+++ +VFRPF G+++ + + + G+ +G ++ H +P
Sbjct: 84 PGRGFVIYPVRYKAIVFRPFKGQVVDGVVTQVNKVGIFCDIGPLS-CFISRHCIPPDMEF 142
Query: 121 EPDPYGRYEVKWIWEFGDTKYVIDGLDEIKFRVLSV 156
+P+ K ++ D VI DEI+ +++
Sbjct: 143 DPNSE-----KPCYKTNDEANVIRNDDEIRVKLIGT 173
>gi|324530828|gb|ADY49116.1| DNA-directed RNA polymerase II subunit RPB7 [Ascaris suum]
Length = 174
Score = 64.7 bits (156), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 42/154 (27%), Positives = 70/154 (45%), Gaps = 6/154 (3%)
Query: 1 MFYLSKIEHTLRLPPHLLRLPLNEAIKLELENVFLDKVIANLGLCISIYDIKEIEGGFVY 60
MFY +EH + L P L E +K +L N G I++ I I G +
Sbjct: 1 MFYHIPLEHEICLHPKYFGPELLETVKRKLFNEVEGTCTGKYGFVIAVTTIDNIGSGLIQ 60
Query: 61 PGEGASTHTVKFRLVVFRPFVGEIIAAKLKESDANGLRLSLGFFEDIYVPSHLLPSPSRS 120
PG G + VK++ +VFRPF G+++ A + + + G+ +G +V H +P
Sbjct: 61 PGRGFVVYPVKYKAIVFRPFKGQVVDAVVSQVNKVGIFCDIGPMS-CFVSRHCIPPDMEF 119
Query: 121 EPDPYGRYEVKWIWEFGDTKYVIDGLDEIKFRVL 154
EP+ ++ D VI DEI+ +++
Sbjct: 120 EPNAN-----PPCYKTQDESVVIKQDDEIRVKLI 148
>gi|195036122|ref|XP_001989520.1| GH18755 [Drosophila grimshawi]
gi|195111302|ref|XP_002000218.1| GI22645 [Drosophila mojavensis]
gi|195389416|ref|XP_002053373.1| GJ23373 [Drosophila virilis]
gi|193893716|gb|EDV92582.1| GH18755 [Drosophila grimshawi]
gi|193916812|gb|EDW15679.1| GI22645 [Drosophila mojavensis]
gi|194151459|gb|EDW66893.1| GJ23373 [Drosophila virilis]
Length = 173
Score = 64.3 bits (155), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 42/161 (26%), Positives = 74/161 (45%), Gaps = 14/161 (8%)
Query: 1 MFYLSKIEHTLRLPPHLLRLPLNEAIKLELENVFLDKVIANLGLCISIYDIKEIEGGFVY 60
MFY +EH + L P L E +K +L + G I++ I I G +
Sbjct: 1 MFYHISLEHEILLHPRYFGPQLLETVKQKLYSEVEGTCTGKYGFVIAVTTIDLIGSGVIQ 60
Query: 61 PGEGASTHTVKFRLVVFRPFVGEIIAAKLKESDANGLRLSLG----FFEDIYVPSHLLPS 116
PG+G + VK++ +VFRPF GE++ A +K+ + G+ +G F +P+ +
Sbjct: 61 PGQGFVVYPVKYKAIVFRPFKGEVLDAVVKQINKVGMFAEIGPLSCFISHHSIPADMQFC 120
Query: 117 PSRSEPDPYGRYEVKWIWEFGDTKYVIDGLDEIKFRVLSVN 157
P+ + P ++ D VI G D+I+ +++
Sbjct: 121 PNGNPP----------CYKSKDEDVVISGEDKIRLKIVGTR 151
>gi|408382504|ref|ZP_11180048.1| DNA-directed RNA polymerase subunit E' [Methanobacterium formicicum
DSM 3637]
gi|407814859|gb|EKF85482.1| DNA-directed RNA polymerase subunit E' [Methanobacterium formicicum
DSM 3637]
Length = 194
Score = 64.3 bits (155), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 35/102 (34%), Positives = 58/102 (56%)
Query: 1 MFYLSKIEHTLRLPPHLLRLPLNEAIKLELENVFLDKVIANLGLCISIYDIKEIEGGFVY 60
M+ +SKIE T+R+PP PLNE + ++ K+ +GL +++ DI+EI G V
Sbjct: 1 MYLISKIEDTVRIPPSRFEEPLNEVAIEIINESYVGKIDKKMGLMVTVKDIEEIGVGKVI 60
Query: 61 PGEGASTHTVKFRLVVFRPFVGEIIAAKLKESDANGLRLSLG 102
G+GA+ H V F + F+P + EI+ ++ E G + +G
Sbjct: 61 MGDGAAYHEVVFNALFFKPELHEIVEGEVIEVTEFGAFIRIG 102
>gi|312072366|ref|XP_003139033.1| polymerase [Loa loa]
gi|307765805|gb|EFO25039.1| DNA-directed RNA polymerase II subunit RPB7 [Loa loa]
Length = 174
Score = 64.3 bits (155), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 41/156 (26%), Positives = 70/156 (44%), Gaps = 6/156 (3%)
Query: 1 MFYLSKIEHTLRLPPHLLRLPLNEAIKLELENVFLDKVIANLGLCISIYDIKEIEGGFVY 60
MFY ++H + L P L E +K +L N G +++ I I G +
Sbjct: 1 MFYHIPLDHEICLHPKYFGPDLLETVKRKLFNEVEGTCTGKYGFVVAVTTIDNIGAGLIQ 60
Query: 61 PGEGASTHTVKFRLVVFRPFVGEIIAAKLKESDANGLRLSLGFFEDIYVPSHLLPSPSRS 120
PG G + VK++ +VFRPF G+++ A + + + GL +G +V H +P
Sbjct: 61 PGRGFVLYPVKYKAIVFRPFKGQVVDAVVNQVNKVGLFCDIGPLS-CFVSRHCIPPDMEF 119
Query: 121 EPDPYGRYEVKWIWEFGDTKYVIDGLDEIKFRVLSV 156
EP+ ++ D VI DEI+ +++
Sbjct: 120 EPN-----SNPPCYKTADESVVIKQDDEIRVKLIGT 150
>gi|341885978|gb|EGT41913.1| CBN-RPB-7 protein [Caenorhabditis brenneri]
gi|341897170|gb|EGT53105.1| hypothetical protein CAEBREN_28990 [Caenorhabditis brenneri]
Length = 174
Score = 63.9 bits (154), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 39/156 (25%), Positives = 71/156 (45%), Gaps = 6/156 (3%)
Query: 1 MFYLSKIEHTLRLPPHLLRLPLNEAIKLELENVFLDKVIANLGLCISIYDIKEIEGGFVY 60
MF+ ++H + L P LNE IK +L N G I++ I I G +
Sbjct: 1 MFFHLSLDHEVCLHPKYFGPNLNETIKQKLFNEVEGTCTGKYGFVIAVTTIDTIGHGLIQ 60
Query: 61 PGEGASTHTVKFRLVVFRPFVGEIIAAKLKESDANGLRLSLGFFEDIYVPSHLLPSPSRS 120
PG G + V+++ +VFRPF G+++ + + + G+ +G ++ H +P
Sbjct: 61 PGRGFVIYPVRYKAIVFRPFKGQVVDGVVSQVNKVGIFCDIGPLS-CFISRHCIPPDMEF 119
Query: 121 EPDPYGRYEVKWIWEFGDTKYVIDGLDEIKFRVLSV 156
+P+ K ++ D VI DEI+ +++
Sbjct: 120 DPN-----SEKPCYKTNDEATVIRNDDEIRVKLIGT 150
>gi|24647020|ref|NP_731983.1| Rpb7 [Drosophila melanogaster]
gi|195328827|ref|XP_002031113.1| GM25797 [Drosophila sechellia]
gi|195570746|ref|XP_002103365.1| GD20374 [Drosophila simulans]
gi|23171325|gb|AAF55145.2| Rpb7 [Drosophila melanogaster]
gi|66772833|gb|AAY55728.1| IP02321p [Drosophila melanogaster]
gi|117935442|gb|ABK57062.1| IP02323p [Drosophila melanogaster]
gi|194120056|gb|EDW42099.1| GM25797 [Drosophila sechellia]
gi|194199292|gb|EDX12868.1| GD20374 [Drosophila simulans]
gi|220951186|gb|ACL88136.1| Rpb7-PA [synthetic construct]
gi|220960522|gb|ACL92797.1| Rpb7-PA [synthetic construct]
Length = 173
Score = 63.9 bits (154), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 41/161 (25%), Positives = 74/161 (45%), Gaps = 14/161 (8%)
Query: 1 MFYLSKIEHTLRLPPHLLRLPLNEAIKLELENVFLDKVIANLGLCISIYDIKEIEGGFVY 60
MFY +E + L P L E +K +L + G I++ I +I G +
Sbjct: 1 MFYHISLEQEILLHPRYFGPQLLETVKQKLYSEVEGTCTGKYGFVIAVTTIDQIGSGVIQ 60
Query: 61 PGEGASTHTVKFRLVVFRPFVGEIIAAKLKESDANGLRLSLG----FFEDIYVPSHLLPS 116
PG+G + VK++ +VFRPF GE++ A +K+ + G+ +G F +P+ +
Sbjct: 61 PGQGFVVYPVKYKAIVFRPFKGEVLDAVVKQINKVGMFAEIGPLSCFISHHSIPADMQFC 120
Query: 117 PSRSEPDPYGRYEVKWIWEFGDTKYVIDGLDEIKFRVLSVN 157
P+ + P ++ D VI G D+I+ +++
Sbjct: 121 PNGNPP----------CYKSKDEDVVISGEDKIRLKIVGTR 151
>gi|19173391|ref|NP_597194.1| DNA-DIRECTED RNA POLYMERASE III 25KDA POLYPEPTIDE [Encephalitozoon
cuniculi GB-M1]
gi|19170980|emb|CAD26370.1| DNA-DIRECTED RNA POLYMERASE III 25KDA POLYPEPTIDE [Encephalitozoon
cuniculi GB-M1]
Length = 176
Score = 63.9 bits (154), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 48/194 (24%), Positives = 94/194 (48%), Gaps = 21/194 (10%)
Query: 1 MFYLSKIEHTLRLPPHLLRLPLNEAIKLELENVFLDKVIANLGLCISIYDIKEIEGGFVY 60
MFY ++IE R+ L L + + EL+ ++ +++ + +CI + + E+ + Y
Sbjct: 1 MFYSAEIED--RVKISLSHLEKEKEVFEELKRKYVGRMLGDCSICILVARVMEV---YEY 55
Query: 61 P-GEGASTHTVKFRLVVFRPFVGEIIAAKLKESDANGLRLSLGFFEDIYVP-SHLLPSPS 118
+ V F +++F+ F GE++ ++ E G+RL + FF +++V S L P+
Sbjct: 56 KVCDEFLIARVWFEVLLFKFFEGEVVCGEILEQSEEGMRLGVSFFSELWVTKSGLPPATE 115
Query: 119 RSEPDPYGRYEVKWIWEFGDTKYVIDGLDEIKFRVLSVNYPSIPIEQAEGSKPFAPMVIN 178
+ + G ++ W+W + +K ++FRVL + +GS V+N
Sbjct: 116 KVYVNDCGEKQLVWVWIYRGSKLYFRRNAHVRFRVL---------DNEKGSST-VLCVLN 165
Query: 179 GSIDYDGLGPVSWW 192
+ GLGP+ WW
Sbjct: 166 EA----GLGPLEWW 175
>gi|325304060|tpg|DAA34731.1| TPA_inf: DNA-directed RNA polymerase subunit E' [Amblyomma
variegatum]
gi|346469865|gb|AEO34777.1| hypothetical protein [Amblyomma maculatum]
Length = 171
Score = 63.9 bits (154), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 39/157 (24%), Positives = 71/157 (45%), Gaps = 6/157 (3%)
Query: 1 MFYLSKIEHTLRLPPHLLRLPLNEAIKLELENVFLDKVIANLGLCISIYDIKEIEGGFVY 60
MFY ++H + L P L E +K +L G +++ I I GG +
Sbjct: 1 MFYHISLDHEILLHPRYFGPQLVETVKQKLYAEVEGTCTGKYGFVVAVTTIDNIGGGLIQ 60
Query: 61 PGEGASTHTVKFRLVVFRPFVGEIIAAKLKESDANGLRLSLGFFEDIYVPSHLLPSPSRS 120
PG G + V+++ +VFRPF GE++ A + + + GL +G ++ H +PS +
Sbjct: 61 PGRGFVVYPVRYKAIVFRPFKGEVLDAVVTQVNKVGLFTEIGPLS-CFISRHSIPSDMQF 119
Query: 121 EPDPYGRYEVKWIWEFGDTKYVIDGLDEIKFRVLSVN 157
+P+ + D +I DEI+ +++
Sbjct: 120 DPNSN-----PPCYRTQDEDIIIQQDDEIRLKIVGTR 151
>gi|345320354|ref|XP_001521817.2| PREDICTED: DNA-directed RNA polymerase III subunit RPC8-like,
partial [Ornithorhynchus anatinus]
Length = 69
Score = 63.9 bits (154), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 30/69 (43%), Positives = 46/69 (66%), Gaps = 1/69 (1%)
Query: 1 MFYLSKIEHTLRLPPHLLRLPLNEAIKLELENVFLDKVIANLGLCISIYDIKEIEGGFVY 60
MF L ++ T+R+PP LN++I EL +KV+ N+GLCI +YDI ++E +++
Sbjct: 1 MFVLVEMVDTVRIPPWQFERKLNDSIVEELNKKLANKVVYNVGLCICLYDITKLEDAYIF 60
Query: 61 PGEGASTHT 69
PG+GAS HT
Sbjct: 61 PGDGAS-HT 68
>gi|427786803|gb|JAA58853.1| Putative polymerase rna ii dna directed polypeptide g
[Rhipicephalus pulchellus]
Length = 171
Score = 63.5 bits (153), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 39/157 (24%), Positives = 71/157 (45%), Gaps = 6/157 (3%)
Query: 1 MFYLSKIEHTLRLPPHLLRLPLNEAIKLELENVFLDKVIANLGLCISIYDIKEIEGGFVY 60
MFY ++H + L P L E +K +L G +++ I I GG +
Sbjct: 1 MFYHISLDHEILLHPKYFGPQLVETVKQKLYAEVEGTCTGKYGFVVAVTTIDNIGGGLIQ 60
Query: 61 PGEGASTHTVKFRLVVFRPFVGEIIAAKLKESDANGLRLSLGFFEDIYVPSHLLPSPSRS 120
PG G + V+++ +VFRPF GE++ A + + + GL +G ++ H +PS +
Sbjct: 61 PGRGFVVYPVRYKAIVFRPFKGEVLDAVVTQVNKVGLFTEIGPLS-CFISRHSIPSDMQF 119
Query: 121 EPDPYGRYEVKWIWEFGDTKYVIDGLDEIKFRVLSVN 157
+P+ + D +I DEI+ +++
Sbjct: 120 DPNSN-----PPCYRTQDEDIIIQQDDEIRLKIVGTR 151
>gi|320586938|gb|EFW99601.1| DNA-directed RNA polymerase 3 25 kd polypeptide [Grosmannia
clavigera kw1407]
Length = 165
Score = 63.5 bits (153), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 49/198 (24%), Positives = 81/198 (40%), Gaps = 40/198 (20%)
Query: 1 MFYLSKIEHTLRLPPHLLRLPLNEAIKLELENVFLDKVIANLGLCISIYDIKEIEGGFVY 60
MF L+KI +R+ P+ +AI+ + + + +K+I +GLCI +YD+ G +
Sbjct: 1 MFILTKIADLVRIEPNDFSKKSIQAIEDNINSKYANKIIQKIGLCICLYDLLWTSEGLIG 60
Query: 61 PGEGASTHTVKFRLVVFRPFVGEIIAAKLKESDANGLRLSLGFFEDIYVPSHLLPSPSRS 120
G+G V+ FF+DI +P LP +
Sbjct: 61 HGDGYVNVNVR-----------------------------TDFFDDILIPYDELPDEAE- 90
Query: 121 EPDPYGRYEVKWIWEFGDTKYVIDGLDEIKFRVLSVNY----PSIPIEQAEGSKPFA--P 174
Y + W+W + D + ++FRV+ + P+ PIE+ E + P
Sbjct: 91 ----YDINQQLWVWNVEGQRMFYDMHEMVRFRVIDEEWHDQTPTKPIERGEEPEEHRNPP 146
Query: 175 MVINGSIDYDGLGPVSWW 192
I GS+ GLG WW
Sbjct: 147 YRIQGSMKDPGLGVCIWW 164
>gi|198430459|ref|XP_002120172.1| PREDICTED: similar to DNA directed RNA polymerase II polypeptide G
[Ciona intestinalis]
Length = 172
Score = 63.5 bits (153), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 40/156 (25%), Positives = 72/156 (46%), Gaps = 6/156 (3%)
Query: 1 MFYLSKIEHTLRLPPHLLRLPLNEAIKLELENVFLDKVIANLGLCISIYDIKEIEGGFVY 60
MFY +EH + L P L E +K +L G I++ I I G +
Sbjct: 1 MFYHISLEHEILLHPRYFGPNLLETVKQKLFTEVEGTCTGKHGFVIAVTTIDNIGDGLIQ 60
Query: 61 PGEGASTHTVKFRLVVFRPFVGEIIAAKLKESDANGLRLSLGFFEDIYVPSHLLPSPSRS 120
PG G + +K++ +VFRPF GE++ A + + + GL +G ++ H +P+ +
Sbjct: 61 PGRGFVLYPIKYKAIVFRPFKGEVVDAVVTQVNKVGLFTEIGPMS-CFISRHSIPADMKF 119
Query: 121 EPDPYGRYEVKWIWEFGDTKYVIDGLDEIKFRVLSV 156
+P+ + ++ D VI DEI+ +++
Sbjct: 120 DPESH-----PPCYKTDDEDVVIQQDDEIRLKIVGT 150
>gi|258575615|ref|XP_002541989.1| conserved hypothetical protein [Uncinocarpus reesii 1704]
gi|237902255|gb|EEP76656.1| conserved hypothetical protein [Uncinocarpus reesii 1704]
Length = 176
Score = 63.5 bits (153), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 49/176 (27%), Positives = 77/176 (43%), Gaps = 30/176 (17%)
Query: 25 AIKLELENVFLDKVIANLGLCISIYDIKEIEGGFVYPGEGASTHTVKFRLVVFRPFVGEI 84
AI+ + + +KVI N+GLC+ YD+ E G + G G V
Sbjct: 23 AIEDNINEKYANKVIQNVGLCMGFYDMLESSDGLIGHGTGLVNVNV-------------- 68
Query: 85 IAAKLKESDANGLRLSLGFFEDIYVPSHLLPSPSRSEPDPYGRYEVKWIWEFGD-TKYVI 143
+ E + L++ L FF DI +P LL +R + + W+W+ G+ + +
Sbjct: 69 --CSIFEEPTDTLQVGLEFFSDILIPPSLLLDGAR-----FDYTDQVWVWDNGEGSTFYF 121
Query: 144 DGLDEIKFRVLSV-------NYPSIPIEQAEGSKPFAPMVINGSIDYDGLGPVSWW 192
D + ++FRV + N P P G + AP I GS+ GLG V+WW
Sbjct: 122 DIGETVRFRVEAEEWHDQIPNAPDTPDTSTVGERK-APYSIIGSMQIAGLGLVAWW 176
>gi|183230197|ref|XP_656629.2| DNA-directed RNA polymerase III subunit [Entamoeba histolytica
HM-1:IMSS]
gi|169803023|gb|EAL51243.2| DNA-directed RNA polymerase III subunit, putative [Entamoeba
histolytica HM-1:IMSS]
gi|407039875|gb|EKE39862.1| DNA-directed RNA polymerase III subunit, putative [Entamoeba
nuttalli P19]
gi|449705760|gb|EMD45744.1| DNA-directed RNA polymerase III subunit, putative [Entamoeba
histolytica KU27]
Length = 236
Score = 63.5 bits (153), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 38/156 (24%), Positives = 77/156 (49%), Gaps = 6/156 (3%)
Query: 1 MFYLSKIEHTLRLPPHLLRLPLNEAIKLELENVFLDKVIANLGLCISIYDIKEIEGGFVY 60
M+ +S+ + ++PP+ L + I + + +K+I G+ +++YDI + +
Sbjct: 1 MYIISQFNDSFKVPPNKLEHIIVSIID-SINTKYQNKMIEGKGIGVTLYDIVSMTTPTIA 59
Query: 61 PGEGASTHTVKFRLVVFRPFVGEIIAAKLKESDANGLRLSLGFFEDIYVPSHLLPSPSRS 120
G G + V F ++F PF GE+I ++ S +G++++L F + +++ P+ S
Sbjct: 60 IGTGDVYYEVVFNFIIFSPFQGELIEGRVLRSLPSGIQVTLSFTDSVFIDQCYFPANSDF 119
Query: 121 EPDPYGRYEVKWIWEFGDTKYVIDGLDEIKFRVLSV 156
+ D E W W + TK + I+F+V V
Sbjct: 120 DED-----EQLWYWNYDGTKLPLYINSTIRFKVHHV 150
>gi|399217952|emb|CCF74839.1| unnamed protein product [Babesia microti strain RI]
Length = 176
Score = 63.5 bits (153), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 36/113 (31%), Positives = 59/113 (52%), Gaps = 4/113 (3%)
Query: 1 MFYLSKIEHTLRLPPHLLRLPLNEAIKLELENVFLDKVIANLGLCISIYDIKEIEGGFVY 60
MF L ++ + P LNE +L + + DK+I LGL I + DI G +
Sbjct: 2 MFRLVTYRDSVEIKPCEFEKDLNELFIKKLNSKYTDKIIDGLGLAICVSDIIRYGKGAIL 61
Query: 61 PGEGASTHTVKFRLVVFRPFVGEIIAAKLKESDANGLR----LSLGFFEDIYV 109
+G++ + ++F++ VF P+ +II + SD NG++ LGFF+DI V
Sbjct: 62 RTKGSAIYKIEFKIAVFSPYRQQIIKGVVCHSDNNGIKGNSTFCLGFFDDIIV 114
>gi|268565845|ref|XP_002639564.1| C. briggsae CBR-RPB-7 protein [Caenorhabditis briggsae]
Length = 197
Score = 63.2 bits (152), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 39/154 (25%), Positives = 71/154 (46%), Gaps = 6/154 (3%)
Query: 1 MFYLSKIEHTLRLPPHLLRLPLNEAIKLELENVFLDKVIANLGLCISIYDIKEIEGGFVY 60
MF+ ++H + L P LNE IK +L N G I++ I I G +
Sbjct: 24 MFFHLSLDHEVCLHPKYFGPNLNETIKAKLFNEVEGTCTGKYGFVIAVTTIDTIGHGLIQ 83
Query: 61 PGEGASTHTVKFRLVVFRPFVGEIIAAKLKESDANGLRLSLGFFEDIYVPSHLLPSPSRS 120
PG G + V+++ +VFRPF G+++ + + + G+ +G ++ H +P
Sbjct: 84 PGRGFVIYPVRYKAIVFRPFKGQVVDGVVTQVNKVGIFCDIGPLS-CFISRHCIPPDMEF 142
Query: 121 EPDPYGRYEVKWIWEFGDTKYVIDGLDEIKFRVL 154
+P+ K ++ D VI DEI+ +++
Sbjct: 143 DPN-----SEKPCYKTNDEATVIRNDDEIRVKLI 171
>gi|58394731|ref|XP_320916.2| AGAP002121-PA [Anopheles gambiae str. PEST]
gi|55233251|gb|EAA00949.2| AGAP002121-PA [Anopheles gambiae str. PEST]
Length = 173
Score = 63.2 bits (152), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 35/123 (28%), Positives = 61/123 (49%), Gaps = 1/123 (0%)
Query: 1 MFYLSKIEHTLRLPPHLLRLPLNEAIKLELENVFLDKVIANLGLCISIYDIKEIEGGFVY 60
MFY +EH + L P L E +K +L G I++ I +I G +
Sbjct: 1 MFYHISLEHEILLHPRYFGPQLIETVKQKLYTEVEGTCTGKYGFVIAVTTIDDIGSGTIQ 60
Query: 61 PGEGASTHTVKFRLVVFRPFVGEIIAAKLKESDANGLRLSLGFFEDIYVPSHLLPSPSRS 120
PG+G + VK++ +VFRPF GE++ A +K+ + G+ +G ++ H +P+ +
Sbjct: 61 PGQGFVVYPVKYKAIVFRPFKGEVLDATVKQVNKVGMFAEIGPLS-CFISHHSIPADMQF 119
Query: 121 EPD 123
P+
Sbjct: 120 CPN 122
>gi|410720722|ref|ZP_11360075.1| DNA-directed RNA polymerase subunit E' [Methanobacterium sp.
Maddingley MBC34]
gi|410600433|gb|EKQ54961.1| DNA-directed RNA polymerase subunit E' [Methanobacterium sp.
Maddingley MBC34]
Length = 194
Score = 63.2 bits (152), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 43/158 (27%), Positives = 83/158 (52%), Gaps = 9/158 (5%)
Query: 1 MFYLSKIEHTLRLPPHLLRLPLNEAIKLELENVFLDKVIANLGLCISIYDIKEIEGGFVY 60
M+ +SKIE T+R+PP PLN+ L ++ K+ +GL +++ DI+EI G V
Sbjct: 1 MYLISKIEDTVRIPPSRFEEPLNDVAIEILNEGYVGKIDKKMGLMVTVKDIEEIGVGKVI 60
Query: 61 PGEGASTHTVKFRLVVFRPFVGEIIAAKLKESDANGLRLSLGFFEDIYVPSHLLPSPSRS 120
G+GA+ H V F + F+P + EI+ ++ E G + +G + + S +
Sbjct: 61 MGDGAAYHEVVFTALFFKPELHEIVEGEVIEVTEFGAFIRIGPMDGLVHVSQV------- 113
Query: 121 EPDPYGRYEVKWIWEFG-DTKYVIDGLDEIKFRVLSVN 157
D Y Y+ K G ++K ++ ++++ R+++++
Sbjct: 114 -TDDYINYDGKRGALIGKESKKALEEGNKVRARIVALS 150
>gi|240848959|ref|NP_001155524.1| DNA-directed RNA polymerase II subunit RPB7 [Acyrthosiphon pisum]
gi|239792200|dbj|BAH72468.1| ACYPI003367 [Acyrthosiphon pisum]
Length = 172
Score = 63.2 bits (152), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 38/126 (30%), Positives = 60/126 (47%), Gaps = 4/126 (3%)
Query: 1 MFYLSKIEHTLRLPPHLLRLPLNEAIKLELENVFLDKVIANLGLCISIYDIKEIEGGFVY 60
MFY +EH + L P L + +K +L G I++ I I G +
Sbjct: 1 MFYHIALEHDVLLHPRYFGPQLLDTVKQKLYREVEGTCTGKYGFVIAVTHIDNIGCGLIL 60
Query: 61 PGEGASTHTVKFRLVVFRPFVGEIIAAKLKESDANGLRLSLG----FFEDIYVPSHLLPS 116
PG+G +TVK++ +VFRPF GE++ A + + + G+ +G F +PS L
Sbjct: 61 PGQGFVVYTVKYKAIVFRPFKGEVLEAVVTQLNKVGMFAEIGPLSCFISHHSIPSELQFC 120
Query: 117 PSRSEP 122
P+ S P
Sbjct: 121 PNTSPP 126
>gi|389860871|ref|YP_006363111.1| DNA-directed RNA polymerase subunit E' [Thermogladius
cellulolyticus 1633]
gi|388525775|gb|AFK50973.1| DNA-directed RNA polymerase subunit E' [Thermogladius
cellulolyticus 1633]
Length = 175
Score = 62.8 bits (151), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 33/102 (32%), Positives = 57/102 (55%)
Query: 1 MFYLSKIEHTLRLPPHLLRLPLNEAIKLELENVFLDKVIANLGLCISIYDIKEIEGGFVY 60
MF L K++ +R+PP PL+E EL + + +N GL ++I D+K E G +
Sbjct: 1 MFKLIKVKSVVRIPPDKFGRPLDEVSWEELRKEYEGALTSNAGLVVAILDVKVSEYGRII 60
Query: 61 PGEGASTHTVKFRLVVFRPFVGEIIAAKLKESDANGLRLSLG 102
G+GA+ H V+F + F PF+ E++ ++ +G+ + LG
Sbjct: 61 HGDGATYHDVEFTALTFDPFLKEVVEGEVLNVTESGIFIDLG 102
>gi|354508066|ref|XP_003516074.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC8-like,
partial [Cricetulus griseus]
Length = 117
Score = 62.8 bits (151), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 33/91 (36%), Positives = 51/91 (56%), Gaps = 9/91 (9%)
Query: 72 FRLVVFRPFVGEIIAAKLKESDANGLRLSLGFFEDIYVPSHLLPSPSRSEPDPYGRYEVK 131
FR VVF PF+ EI+ K+K G+ +SLGFF+DI +P L P++ + E
Sbjct: 2 FRYVVFHPFLDEILIGKIKGCSPEGVHVSLGFFDDILIPPESLQQPAK-----FDETEQV 56
Query: 132 WIWEF----GDTKYVIDGLDEIKFRVLSVNY 158
W+WE+ G +D +EI+FRV+ ++
Sbjct: 57 WVWEYETEEGAHDLYMDTGEEIRFRVVDESF 87
>gi|302411694|ref|XP_003003680.1| DNA-directed RNA polymerase III subunit RPC8 [Verticillium
albo-atrum VaMs.102]
gi|261357585|gb|EEY20013.1| DNA-directed RNA polymerase III subunit RPC8 [Verticillium
albo-atrum VaMs.102]
Length = 135
Score = 62.8 bits (151), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 43/136 (31%), Positives = 65/136 (47%), Gaps = 19/136 (13%)
Query: 62 GEGASTHTVKFRLVVFRPFVGEIIAAKLKESDANGLRLSLGFFEDIYVPSHLLPSPSRSE 121
+G V+FRLVVFRPF GE++ + +R+ FF+DI+VP LP +
Sbjct: 2 AQGLVNVNVEFRLVVFRPFKGEVMLGR--------IRIRTDFFDDIFVPFEDLPEGAE-- 51
Query: 122 PDPYGRYEVKWIWEFG-DTKYVIDGLDEIKFRVLSVNY----PSIPIEQAEGSKPFAPMV 176
+ + WIW +T+ D + ++F+V+ + P P + E P P
Sbjct: 52 ---FNHRDQIWIWNCDEETQLFYDIHEMVRFQVIDEEWHDQAPLGPSQSEEEVLP-TPYK 107
Query: 177 INGSIDYDGLGPVSWW 192
I GS+ DGLG WW
Sbjct: 108 IKGSMAMDGLGVCLWW 123
>gi|156088679|ref|XP_001611746.1| hypothetical protein [Babesia bovis T2Bo]
gi|154799000|gb|EDO08178.1| conserved hypothetical protein [Babesia bovis]
Length = 178
Score = 62.4 bits (150), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 44/180 (24%), Positives = 80/180 (44%), Gaps = 7/180 (3%)
Query: 1 MFYLSKIEHTLRLPPHLLRLPLNEAIKLELENVFLDKVIANLGLCISIYDIKEIEGGFVY 60
MF+ +E + L + ++ + ++DKVI +GL + + DI +
Sbjct: 1 MFHFYVVEDLISLEVGEYLSDARSHLSAKVSDKYVDKVIGGVGLVVLVDDILVQSEPKIM 60
Query: 61 PGEGASTHTVKFRLVVFRPFVGEIIAAKLKESDANGLRLSLGFFEDIYVPSHLLPSPSRS 120
P + + T++ R++VF P E++ + SD G+ +SLGFF DI + +P S
Sbjct: 61 PNDACAMFTLRLRILVFAPGRDELLRGIVTSSDVTGISVSLGFFNDIKLIPLFMPPVSAF 120
Query: 121 EPDPYGRYEVKWIWEFGDTKYVIDGLDEIKFRVLSVNYPSIPIEQAEGSKPFAPMVINGS 180
+ D +W E + EI FRV+ ++Y + G + M+I G+
Sbjct: 121 DADSS-----QWYTEVDGNRLYYKHQSEISFRVVDISYNE--LNDLSGDEHLPVMLIIGA 173
>gi|209733032|gb|ACI67385.1| DNA-directed RNA polymerase II subunit RPB7 [Salmo salar]
Length = 172
Score = 62.4 bits (150), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 41/154 (26%), Positives = 69/154 (44%), Gaps = 6/154 (3%)
Query: 1 MFYLSKIEHTLRLPPHLLRLPLNEAIKLELENVFLDKVIANLGLCISIYDIKEIEGGFVY 60
MFY +EH + L P L +K +L G I++ I I G +
Sbjct: 1 MFYHISLEHEILLHPRYFGPNLLNTVKQKLFTEVEGTCTGKYGFVIAVTTIDNIGAGVIQ 60
Query: 61 PGEGASTHTVKFRLVVFRPFVGEIIAAKLKESDANGLRLSLGFFEDIYVPSHLLPSPSRS 120
PG G + VK++ +VFRPF GE++ A + + + GL +G ++ H +PS
Sbjct: 61 PGRGFVLYPVKYKAIVFRPFKGEVVDAVVTQVNKVGLFTEIGSMS-CFISRHSIPSEMEF 119
Query: 121 EPDPYGRYEVKWIWEFGDTKYVIDGLDEIKFRVL 154
+P+ ++ D VI DEI+ +++
Sbjct: 120 DPNSN-----PPCYKTTDEDIVIQQDDEIRLKIV 148
>gi|91082423|ref|XP_970313.1| PREDICTED: similar to GA16051-PA [Tribolium castaneum]
gi|270007516|gb|EFA03964.1| hypothetical protein TcasGA2_TC014109 [Tribolium castaneum]
Length = 173
Score = 62.4 bits (150), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 40/163 (24%), Positives = 73/163 (44%), Gaps = 6/163 (3%)
Query: 1 MFYLSKIEHTLRLPPHLLRLPLNEAIKLELENVFLDKVIANLGLCISIYDIKEIEGGFVY 60
MFY +EH + L P L E +K +L G I++ I I G +
Sbjct: 1 MFYHISLEHEILLHPQYFGPQLLEKVKTKLYTEVEGTCTGKYGFVIAVTTIDSIGAGLIL 60
Query: 61 PGEGASTHTVKFRLVVFRPFVGEIIAAKLKESDANGLRLSLGFFEDIYVPSHLLPSPSRS 120
PG+G + VK++ +VFRPF GE++ A +++ + G+ +G ++ H +P+
Sbjct: 61 PGQGYVVYPVKYKAIVFRPFKGEVLDAVVRQVNKVGMFAEIGPL-SCFISHHSIPAEMEF 119
Query: 121 EPDPYGRYEVKWIWEFGDTKYVIDGLDEIKFRVLSVNYPSIPI 163
P+ + ++ D VI EI+ +++ + I
Sbjct: 120 CPNVNPQ-----CYKTKDEDVVIHAEGEIRLKIVGTRVDATGI 157
>gi|308162256|gb|EFO64663.1| DNA-directed RNA polymerase III subunit 22.9 kDa polypeptide
[Giardia lamblia P15]
Length = 215
Score = 62.0 bits (149), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 60/219 (27%), Positives = 91/219 (41%), Gaps = 36/219 (16%)
Query: 1 MFYLSKIEHTLRLPPHLLRLPLNEAIKLELENVFLDKVIANLGLCISIYDIKEIEGGFVY 60
MF +I T+R+PP L + L F +V+ N G+C+ I I + +
Sbjct: 1 MFVSLQIIDTVRVPPSSQTRYLESKLLEILTASFCGRVLTNCGICLLIERITNLSEQRII 60
Query: 61 PGEGASTHTVKFRLVVFRPFVGEIIAAKL-KESDANGLRLSLGFFEDIYVPSHLLP---- 115
+ + TV F ++ FRP++GEI L + +GL LS GF + I VP LP
Sbjct: 61 HNDCNTYVTVCFSIIAFRPYIGEIFTTFLVSQHPMHGLALSTGFCDTIIVPPSNLPEYLM 120
Query: 116 -SPSRSEPDPYGRYEVKWIWEFGDTKYVIDGLDEIKFRVLSV------NYPSI----PIE 164
+ R +E + +E G EIK +V+ V N SI +E
Sbjct: 121 WNTERQGFTNLPDFESELDFELG---------GEIKIKVMDVLFRTSENASSIELGNALE 171
Query: 165 QAEGSKPF-----------APMVINGSIDYDGLGPVSWW 192
+ E S+ + ++ GS GLG V WW
Sbjct: 172 EEELSQDLIGSWGAIVNSKSKFIVVGSCIGPGLGDVRWW 210
>gi|330833934|ref|YP_004408662.1| DNA-directed RNA polymerase subunit E' [Metallosphaera cuprina
Ar-4]
gi|329566073|gb|AEB94178.1| DNA-directed RNA polymerase subunit E' [Metallosphaera cuprina
Ar-4]
Length = 176
Score = 62.0 bits (149), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 41/160 (25%), Positives = 78/160 (48%), Gaps = 7/160 (4%)
Query: 1 MFYLSKIEHTLRLPPHLLRLPLNEAIKLELENVFLDKVIANLGLCISIYDIKEIEGGFVY 60
MF + K + +R+PP L PL++ L N + +++ +LGL +++ E G +
Sbjct: 1 MFKVIKAKGVVRIPPELFGEPLSKTALDILNNEYKERLFKDLGLVLTVIKANVSEEGMIV 60
Query: 61 PGEGASTHTVKFRLVVFRPFVGEIIAAKLKESDANGLRLSLGFFEDIYVPSHLLPSPSRS 120
G+GA+ H V+F L+ F P + E++ + + D G+ +++G P L S+
Sbjct: 61 FGDGATYHEVEFELLTFLPIIQEVVEGDITQVDNYGIYVNMG-------PMDGLVHVSQI 113
Query: 121 EPDPYGRYEVKWIWEFGDTKYVIDGLDEIKFRVLSVNYPS 160
D Y V+ I +K D ++ RV++V+ +
Sbjct: 114 GDDNYKFDSVRGILVGEKSKKSFQKGDLVRARVMTVSSTA 153
>gi|442759309|gb|JAA71813.1| Putative dna-directed rna polymerase subunit e' [Ixodes ricinus]
Length = 171
Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 38/157 (24%), Positives = 69/157 (43%), Gaps = 6/157 (3%)
Query: 1 MFYLSKIEHTLRLPPHLLRLPLNEAIKLELENVFLDKVIANLGLCISIYDIKEIEGGFVY 60
MFY ++H + L P L E +K +L G +++ I I G +
Sbjct: 1 MFYHISLDHEILLHPRYFGPQLEETVKQKLYAEVEGTCTGKYGFVVAVMTIDNIGAGLIQ 60
Query: 61 PGEGASTHTVKFRLVVFRPFVGEIIAAKLKESDANGLRLSLGFFEDIYVPSHLLPSPSRS 120
PG G + V++ +VFRPF GE++ A + + + GL +G ++ H +PS +
Sbjct: 61 PGRGFVVYPVRYTAIVFRPFKGEVLDAVVTQVNKVGLFTEIGPLS-CFISRHSIPSDMQF 119
Query: 121 EPDPYGRYEVKWIWEFGDTKYVIDGLDEIKFRVLSVN 157
+P+ + D +I DEI+ +++
Sbjct: 120 DPNSN-----PPCYRTQDEDVIIQQDDEIRLKIVGTR 151
>gi|344295631|ref|XP_003419515.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB7-like
[Loxodonta africana]
Length = 232
Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 50/193 (25%), Positives = 84/193 (43%), Gaps = 20/193 (10%)
Query: 1 MFYLSKIEHTLRLPPHLLRLPLNEAIKLELENVFLDKVIANLGLCISIYDIKEIEGGFVY 60
MFY +EH + L P L +K +L G I++ I I G +
Sbjct: 1 MFYHISLEHEILLHPRYFGPNLLNTVKQKLFTEVEGTCTGKYGFVIAVTTIDNIGAGVIQ 60
Query: 61 PGEGASTHTVKFRLVVFRPFVGEIIAAKLKESDANGLRLSLGFFEDIYVPSHLLPSPSRS 120
PG G + VK++ +VFRPF GE++ A + + + GL +G ++ H +PS
Sbjct: 61 PGRGFVLYPVKYKAIVFRPFKGEVVDAVVTQVNKVGLFTEIGPM-SCFISRHSIPSEMEF 119
Query: 121 EPDPYGRYEVKWIWEFGDTKYVIDGLDEIKFRVLSVNYPSIPIEQAEGSKPFAPMVINGS 180
+P+ ++ D VI DEI+ +++ + + + FA GS
Sbjct: 120 DPNSN-----PPCYKTVDEDIVIQQDDEIRLKIVGT--------RVDKNDIFAI----GS 162
Query: 181 I--DYDGLGPVSW 191
+ DY GP++W
Sbjct: 163 LMDDYLVRGPITW 175
>gi|431910359|gb|ELK13432.1| DNA-directed RNA polymerase II subunit RPB7 [Pteropus alecto]
Length = 223
Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 41/156 (26%), Positives = 69/156 (44%), Gaps = 6/156 (3%)
Query: 1 MFYLSKIEHTLRLPPHLLRLPLNEAIKLELENVFLDKVIANLGLCISIYDIKEIEGGFVY 60
MFY +EH + L P L +K +L G I++ I I G +
Sbjct: 1 MFYHISLEHEILLHPRYFGPNLLNTVKQKLFTEVEGTCTGKYGFVIAVTTIDNIGAGVIQ 60
Query: 61 PGEGASTHTVKFRLVVFRPFVGEIIAAKLKESDANGLRLSLGFFEDIYVPSHLLPSPSRS 120
PG G + VK++ +VFRPF GE++ A + + + GL +G ++ H +PS
Sbjct: 61 PGRGFVLYPVKYKAIVFRPFKGEVVDAVVTQVNKVGLFTEIGPMS-CFISRHSIPSEMEF 119
Query: 121 EPDPYGRYEVKWIWEFGDTKYVIDGLDEIKFRVLSV 156
+P+ ++ D VI DEI+ +++
Sbjct: 120 DPNSN-----PPCYKTMDEDIVIKQDDEIRLKIVGT 150
>gi|259089327|ref|NP_001158701.1| DNA-directed RNA polymerase II 19 kDa polypeptide [Oncorhynchus
mykiss]
gi|209737754|gb|ACI69746.1| DNA-directed RNA polymerase II subunit RPB7 [Salmo salar]
gi|225705948|gb|ACO08820.1| DNA-directed RNA polymerase II 19 kDa polypeptide [Oncorhynchus
mykiss]
gi|225717052|gb|ACO14372.1| DNA-directed RNA polymerase II subunit RPB7 [Esox lucius]
gi|303664575|gb|ADM16147.1| DNA-directed RNA polymerase II subunit RPB7 [Salmo salar]
Length = 172
Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 41/154 (26%), Positives = 69/154 (44%), Gaps = 6/154 (3%)
Query: 1 MFYLSKIEHTLRLPPHLLRLPLNEAIKLELENVFLDKVIANLGLCISIYDIKEIEGGFVY 60
MFY +EH + L P L +K +L G I++ I I G +
Sbjct: 1 MFYHISLEHEILLHPRYFGPNLLNTVKQKLFTEVEGTCTGKYGFVIAVTTIDNIGAGVIQ 60
Query: 61 PGEGASTHTVKFRLVVFRPFVGEIIAAKLKESDANGLRLSLGFFEDIYVPSHLLPSPSRS 120
PG G + VK++ +VFRPF GE++ A + + + GL +G ++ H +PS
Sbjct: 61 PGRGFVLYPVKYKAIVFRPFKGEVVDAVVTQVNKVGLFTEIGPMS-CFISRHSIPSEMEF 119
Query: 121 EPDPYGRYEVKWIWEFGDTKYVIDGLDEIKFRVL 154
+P+ ++ D VI DEI+ +++
Sbjct: 120 DPNSN-----PPCYKTTDEDIVIQQDDEIRLKIV 148
>gi|324519968|gb|ADY47529.1| DNA-directed RNA polymerase III subunit RPC8 [Ascaris suum]
Length = 93
Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 28/76 (36%), Positives = 46/76 (60%)
Query: 1 MFYLSKIEHTLRLPPHLLRLPLNEAIKLELENVFLDKVIANLGLCISIYDIKEIEGGFVY 60
MF L+ +E T+R+ PH P E + +L +K++ LGLC+ +YD+ E+ ++
Sbjct: 12 MFVLALMEDTVRIKPHNFGSPFEEVLMKQLNARLTNKIVPGLGLCLFVYDLIEVGVSYIL 71
Query: 61 PGEGASTHTVKFRLVV 76
PG+G++ VKFR VV
Sbjct: 72 PGDGSTHTRVKFRFVV 87
>gi|221102923|ref|XP_002157143.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB7-like [Hydra
magnipapillata]
Length = 172
Score = 61.6 bits (148), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 39/154 (25%), Positives = 71/154 (46%), Gaps = 6/154 (3%)
Query: 1 MFYLSKIEHTLRLPPHLLRLPLNEAIKLELENVFLDKVIANLGLCISIYDIKEIEGGFVY 60
MFY +EH + L P L + +K +L G I++ I I G++
Sbjct: 1 MFYHISLEHEILLHPRYFGPNLLQTVKQKLFTEVEGTCTGKYGFVIAVTTIDNIGAGYIQ 60
Query: 61 PGEGASTHTVKFRLVVFRPFVGEIIAAKLKESDANGLRLSLGFFEDIYVPSHLLPSPSRS 120
P G + VK++ +VFRPF GE++ A + + + GL +G ++ H +P+
Sbjct: 61 PSRGFVVYPVKYKAIVFRPFKGEVLDAVVTQVNKAGLFTEVGPLS-CFISRHSIPTDMEF 119
Query: 121 EPDPYGRYEVKWIWEFGDTKYVIDGLDEIKFRVL 154
+P+ ++ D + VI DEI+ +++
Sbjct: 120 DPN-----SSPPCYKTHDEEVVIQQDDEIRLKIV 148
>gi|159117083|ref|XP_001708762.1| DNA-directed RNA polymerase III subunit 22.9 kDa polypeptide
[Giardia lamblia ATCC 50803]
gi|157436875|gb|EDO81088.1| DNA-directed RNA polymerase III subunit 22.9 kDa polypeptide
[Giardia lamblia ATCC 50803]
Length = 215
Score = 61.6 bits (148), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 58/219 (26%), Positives = 91/219 (41%), Gaps = 36/219 (16%)
Query: 1 MFYLSKIEHTLRLPPHLLRLPLNEAIKLELENVFLDKVIANLGLCISIYDIKEIEGGFVY 60
MF ++ T+R+PP L + L F +V+AN G+C+ I I + +
Sbjct: 1 MFISLQVIDTVRVPPSSQTRYLESKLLEILTASFCGRVLANCGICLLIERITNLSEQRIV 60
Query: 61 PGEGASTHTVKFRLVVFRPFVGEIIAAKL-KESDANGLRLSLGFFEDIYVPSHLLP---- 115
+ + TV F ++ FRP++GEI A L + +GL LS GF + I VP LP
Sbjct: 61 HNDCNTYVTVCFSIIAFRPYIGEIFTAFLVSQHPMHGLALSTGFCDTIIVPPSNLPEYLM 120
Query: 116 -SPSRSEPDPYGRYEVKWIWEFGDTKYVIDGLDEIKFRVLSVNYPS----------IPIE 164
+ R +E + +E G EIK +V+ V + + +E
Sbjct: 121 WNNERQGFTNLPDFESELDFELG---------GEIKIKVVDVIFRTNEDTTSMGLGNALE 171
Query: 165 QAEGSKPF-----------APMVINGSIDYDGLGPVSWW 192
E S+ + ++ GS GLG V WW
Sbjct: 172 GEELSQDLIGSWGAIVNSKSKFIVVGSCTGPGLGDVRWW 210
>gi|341582210|ref|YP_004762702.1| DNA-directed RNA polymerase subunit E' [Thermococcus sp. 4557]
gi|340809868|gb|AEK73025.1| DNA-directed RNA polymerase subunit E' [Thermococcus sp. 4557]
Length = 186
Score = 61.6 bits (148), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 48/192 (25%), Positives = 92/192 (47%), Gaps = 18/192 (9%)
Query: 1 MFYLSKIEHTLRLPPHLLRLPLNEAIKLELENVFLDKVIANLGLCISIYDIKEIEGGFVY 60
M+ L KI+ +R+PP + + EA KL L + + G+ ++I D+ EI G +
Sbjct: 1 MYKLLKIKDVVRIPPRMFTMEPKEAAKLVLRETYEGIYDRDEGVVLAILDVDEIGQGVIV 60
Query: 61 PGEGASTHTVKFRLVVFRPFVGEIIAAKLKESDANGLRLSLGFFEDIYVPSHLLPSPSRS 120
PG+GA+ H V F ++V++P + E++ ++ + G + +G + + S L+
Sbjct: 61 PGDGATYHEVVFNVLVWKPEMHEVVEGEVIDVAPYGAFIRIGPMDGLVHISQLM------ 114
Query: 121 EPDPYGRYEVKWIWEFG-DTKYVIDGLDEIKFRVLSVNYPSIPIEQAEGSKPFAPMVING 179
D Y ++ K G +T ++ DE + R+++V+ S I + + I
Sbjct: 115 --DDYVVFDEKNKQFIGKETNRILKLGDEARARIIAVSVKSRVIRENK---------IGL 163
Query: 180 SIDYDGLGPVSW 191
++ GLG W
Sbjct: 164 TMRQPGLGKRDW 175
>gi|70606624|ref|YP_255494.1| DNA-directed RNA polymerase subunit E' [Sulfolobus acidocaldarius
DSM 639]
gi|449066846|ref|YP_007433928.1| DNA-directed RNA polymerase subunit E' [Sulfolobus acidocaldarius
N8]
gi|449069118|ref|YP_007436199.1| DNA-directed RNA polymerase subunit E' [Sulfolobus acidocaldarius
Ron12/I]
gi|73920767|sp|P39466.2|RPOE_SULAC RecName: Full=DNA-directed RNA polymerase subunit E
gi|68567272|gb|AAY80201.1| DNA-directed RNA polymerase subunit E [Sulfolobus acidocaldarius
DSM 639]
gi|449035354|gb|AGE70780.1| DNA-directed RNA polymerase subunit E' [Sulfolobus acidocaldarius
N8]
gi|449037626|gb|AGE73051.1| DNA-directed RNA polymerase subunit E' [Sulfolobus acidocaldarius
Ron12/I]
Length = 183
Score = 61.6 bits (148), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 32/103 (31%), Positives = 63/103 (61%), Gaps = 2/103 (1%)
Query: 1 MFYLSKIEHTLRLPPHLLRLPLNE-AIKLELENVFLDKVIANLGLCISIYDIKEIEGGFV 59
MF L + + +R+PP ++E AIK+ L + +K+I ++G+ + I + K E GF+
Sbjct: 1 MFKLVRAKGIVRIPPEYFGQSVDEIAIKI-LRQEYQEKLIKDIGVVLGIVNAKASEEGFI 59
Query: 60 YPGEGASTHTVKFRLVVFRPFVGEIIAAKLKESDANGLRLSLG 102
G+GA+ H V+F ++V+ P + E+I ++ + D G+ +++G
Sbjct: 60 IFGDGATYHEVEFDMLVYTPIIHEVIEGEVSQVDNYGVYVNMG 102
>gi|237823484|pdb|2WAQ|E Chain E, The Complete Structure Of The Archaeal 13-Subunit Dna-
Directed Rna Polymerase
gi|237823494|pdb|2WB1|E Chain E, The Complete Structure Of The Archaeal 13-Subunit Dna-
Directed Rna Polymerase
gi|237823509|pdb|2WB1|T Chain T, The Complete Structure Of The Archaeal 13-Subunit Dna-
Directed Rna Polymerase
Length = 180
Score = 61.6 bits (148), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 47/156 (30%), Positives = 82/156 (52%), Gaps = 7/156 (4%)
Query: 1 MFYLSKIEHTLRLPPHLLRLPLNEAIKLELENVFLDKVIANLGLCISIYDIKEIEGGFVY 60
M+ L K +R+PP+ PLNE EL + +K++ +LGL ++I ++K E G +
Sbjct: 1 MYKLIKARSIVRIPPNEFGKPLNEIALNELRQQYQEKILKDLGLVLAILNVKTSEEGILV 60
Query: 61 PGEGASTHTVKFRLVVFRPFVGEIIAAKLKESDANGLRLSLGFFEDIYVPSHLLPSPSRS 120
G+GA+ H V+F ++ + P V E++ ++ + D G+ ++LG P L S+
Sbjct: 61 FGDGATYHEVEFDMITYVPVVQEVVEGEVLQVDNYGIFVNLG-------PMDGLVHISQI 113
Query: 121 EPDPYGRYEVKWIWEFGDTKYVIDGLDEIKFRVLSV 156
D V+ I +K VI D+++ RV+SV
Sbjct: 114 TDDTLKYDNVRGIIFGEKSKKVIQKGDKVRARVISV 149
>gi|148701426|gb|EDL33373.1| polymerase (RNA) II (DNA directed) polypeptide G, isoform CRA_c
[Mus musculus]
Length = 159
Score = 61.6 bits (148), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 41/154 (26%), Positives = 69/154 (44%), Gaps = 6/154 (3%)
Query: 1 MFYLSKIEHTLRLPPHLLRLPLNEAIKLELENVFLDKVIANLGLCISIYDIKEIEGGFVY 60
MFY +EH + L P L +K +L G I++ I I G +
Sbjct: 1 MFYHISLEHEILLHPRYFGPNLLNTVKQKLFTEVEGTCTGKYGFVIAVTTIDNIGAGVIQ 60
Query: 61 PGEGASTHTVKFRLVVFRPFVGEIIAAKLKESDANGLRLSLGFFEDIYVPSHLLPSPSRS 120
PG G + VK++ +VFRPF GE++ A + + + GL +G ++ H +PS
Sbjct: 61 PGRGFVLYPVKYKAIVFRPFKGEVVDAVVTQVNKVGLFTEIGPMS-CFISRHSIPSEMEF 119
Query: 121 EPDPYGRYEVKWIWEFGDTKYVIDGLDEIKFRVL 154
+P+ ++ D VI DEI+ +++
Sbjct: 120 DPNSN-----PPCYKTMDEDIVIQQDDEIRLKIV 148
>gi|15897347|ref|NP_341952.1| DNA-directed RNA polymerase subunit E' [Sulfolobus solfataricus P2]
gi|284173313|ref|ZP_06387282.1| DNA-directed RNA polymerase subunit E' [Sulfolobus solfataricus
98/2]
gi|384433868|ref|YP_005643226.1| DNA-directed RNA polymerase [Sulfolobus solfataricus 98/2]
gi|167744885|pdb|2PMZ|E Chain E, Archaeal Rna Polymerase From Sulfolobus Solfataricus
gi|167744896|pdb|2PMZ|T Chain T, Archaeal Rna Polymerase From Sulfolobus Solfataricus
gi|239782147|pdb|3HKZ|E Chain E, The X-Ray Crystal Structure Of Rna Polymerase From Archaea
gi|239782160|pdb|3HKZ|Q Chain Q, The X-Ray Crystal Structure Of Rna Polymerase From Archaea
gi|13813566|gb|AAK40742.1| DNA-directed RNA polymerase, subunit E' (rpoE1) [Sulfolobus
solfataricus P2]
gi|261602022|gb|ACX91625.1| DNA-directed RNA polymerase [Sulfolobus solfataricus 98/2]
Length = 180
Score = 61.6 bits (148), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 47/156 (30%), Positives = 82/156 (52%), Gaps = 7/156 (4%)
Query: 1 MFYLSKIEHTLRLPPHLLRLPLNEAIKLELENVFLDKVIANLGLCISIYDIKEIEGGFVY 60
M+ L K +R+PP+ PLNE EL + +K++ +LGL ++I ++K E G +
Sbjct: 1 MYKLIKARSIVRIPPNEFGKPLNEIALNELRQQYQEKILKDLGLVLAILNVKTSEEGILV 60
Query: 61 PGEGASTHTVKFRLVVFRPFVGEIIAAKLKESDANGLRLSLGFFEDIYVPSHLLPSPSRS 120
G+GA+ H V+F ++ + P V E++ ++ + D G+ ++LG P L S+
Sbjct: 61 FGDGATYHEVEFDMITYVPVVQEVVEGEVLQVDNYGIFVNLG-------PMDGLVHISQI 113
Query: 121 EPDPYGRYEVKWIWEFGDTKYVIDGLDEIKFRVLSV 156
D V+ I +K VI D+++ RV+SV
Sbjct: 114 TDDTLKYDNVRGIIFGEKSKKVIQKGDKVRARVISV 149
>gi|323462792|pdb|2Y0S|E Chain E, Crystal Structure Of Sulfolobus Shibatae Rna Polymerase In
P21 Space Group
gi|323462807|pdb|2Y0S|T Chain T, Crystal Structure Of Sulfolobus Shibatae Rna Polymerase In
P21 Space Group
gi|400260746|pdb|4AYB|E Chain E, Rnap At 3.2ang
gi|400260763|pdb|4B1O|E Chain E, Archaeal Rnap-Dna Binary Complex At 4.32ang
gi|400260782|pdb|4B1P|T Chain T, Archaeal Rnap-Dna Binary Complex At 4.32ang
gi|219814437|gb|ACL36492.1| RNA polymerase subunit 7 [Sulfolobus shibatae B12]
Length = 180
Score = 61.6 bits (148), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 47/156 (30%), Positives = 82/156 (52%), Gaps = 7/156 (4%)
Query: 1 MFYLSKIEHTLRLPPHLLRLPLNEAIKLELENVFLDKVIANLGLCISIYDIKEIEGGFVY 60
M+ L K +R+PP+ PLNE EL + +K++ +LGL ++I ++K E G +
Sbjct: 1 MYKLIKARSIVRIPPNEFGKPLNEIALNELRQQYQEKILKDLGLVLAILNVKTSEEGMLV 60
Query: 61 PGEGASTHTVKFRLVVFRPFVGEIIAAKLKESDANGLRLSLGFFEDIYVPSHLLPSPSRS 120
G+GA+ H V+F ++ + P V E++ ++ + D G+ ++LG P L S+
Sbjct: 61 FGDGATYHEVEFDMITYVPVVQEVVEGEVLQVDNYGVFVNLG-------PMDGLVHISQI 113
Query: 121 EPDPYGRYEVKWIWEFGDTKYVIDGLDEIKFRVLSV 156
D V+ I +K VI D+++ RV+SV
Sbjct: 114 TDDTLKYDNVRGIIFGEKSKKVIQKGDKVRARVISV 149
>gi|355712735|gb|AES04448.1| polymerase II polypeptide G [Mustela putorius furo]
Length = 183
Score = 61.6 bits (148), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 41/156 (26%), Positives = 69/156 (44%), Gaps = 6/156 (3%)
Query: 1 MFYLSKIEHTLRLPPHLLRLPLNEAIKLELENVFLDKVIANLGLCISIYDIKEIEGGFVY 60
MFY +EH + L P L +K +L G I++ I I G +
Sbjct: 13 MFYHISLEHEILLHPRYFGPNLLNTVKQKLFTEVEGTCTGKYGFVIAVTTIDNIGAGVIQ 72
Query: 61 PGEGASTHTVKFRLVVFRPFVGEIIAAKLKESDANGLRLSLGFFEDIYVPSHLLPSPSRS 120
PG G + VK++ +VFRPF GE++ A + + + GL +G ++ H +PS
Sbjct: 73 PGRGFVLYPVKYKAIVFRPFKGEVVDAVVTQVNKVGLFTEIGPMS-CFISRHSIPSEMEF 131
Query: 121 EPDPYGRYEVKWIWEFGDTKYVIDGLDEIKFRVLSV 156
+P+ ++ D VI DEI+ +++
Sbjct: 132 DPNSN-----PPCYKTMDEDIVIQQDDEIRLKIVGT 162
>gi|157136015|ref|XP_001656728.1| DNA-directed RNA polymerase II 19 kDa polypeptide rpb7 [Aedes
aegypti]
gi|108881096|gb|EAT45321.1| AAEL003401-PA [Aedes aegypti]
Length = 173
Score = 61.2 bits (147), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 34/123 (27%), Positives = 60/123 (48%), Gaps = 1/123 (0%)
Query: 1 MFYLSKIEHTLRLPPHLLRLPLNEAIKLELENVFLDKVIANLGLCISIYDIKEIEGGFVY 60
MFY +EH + L P L E +K +L G I++ I +I G +
Sbjct: 1 MFYHISLEHEILLHPRYFGPQLIETVKQKLYTEVEGTCTGKYGFVIAVTTIDDIGSGLIL 60
Query: 61 PGEGASTHTVKFRLVVFRPFVGEIIAAKLKESDANGLRLSLGFFEDIYVPSHLLPSPSRS 120
PG+G + VK++ +VFRPF GE++ A + + + G+ +G ++ H +P+ +
Sbjct: 61 PGQGFVVYPVKYKAIVFRPFKGEVLDAVVTQVNKVGMFAQIGPLS-CFISHHSIPADMQF 119
Query: 121 EPD 123
P+
Sbjct: 120 CPN 122
>gi|355566390|gb|EHH22769.1| DNA-directed RNA polymerase II subunit RPB7, partial [Macaca
mulatta]
gi|355752017|gb|EHH56137.1| DNA-directed RNA polymerase II subunit RPB7, partial [Macaca
fascicularis]
Length = 169
Score = 61.2 bits (147), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 41/154 (26%), Positives = 69/154 (44%), Gaps = 6/154 (3%)
Query: 1 MFYLSKIEHTLRLPPHLLRLPLNEAIKLELENVFLDKVIANLGLCISIYDIKEIEGGFVY 60
MFY +EH + L P L +K +L G I++ I I G +
Sbjct: 1 MFYHISLEHEILLHPRYFGPNLLNTVKQKLFTEVEGTCTGKYGFVIAVTTIDNIGAGVIQ 60
Query: 61 PGEGASTHTVKFRLVVFRPFVGEIIAAKLKESDANGLRLSLGFFEDIYVPSHLLPSPSRS 120
PG G + VK++ +VFRPF GE++ A + + + GL +G ++ H +PS
Sbjct: 61 PGRGFVLYPVKYKAIVFRPFKGEVVDAVVTQVNKVGLFTEIGPMS-CFISRHSIPSEMEF 119
Query: 121 EPDPYGRYEVKWIWEFGDTKYVIDGLDEIKFRVL 154
+P+ ++ D VI DEI+ +++
Sbjct: 120 DPNSN-----PPCYKTMDEDIVIQQDDEIRLKIV 148
>gi|226372376|gb|ACO51813.1| DNA-directed RNA polymerase II subunit RPB7 [Rana catesbeiana]
Length = 172
Score = 61.2 bits (147), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 41/154 (26%), Positives = 69/154 (44%), Gaps = 6/154 (3%)
Query: 1 MFYLSKIEHTLRLPPHLLRLPLNEAIKLELENVFLDKVIANLGLCISIYDIKEIEGGFVY 60
MFY +EH + L P L +K +L G I++ I I G +
Sbjct: 1 MFYHISLEHEILLHPRYFGPNLLNTVKQKLFTEVEGTCTGKYGFVIAVTTIDNIGAGVIQ 60
Query: 61 PGEGASTHTVKFRLVVFRPFVGEIIAAKLKESDANGLRLSLGFFEDIYVPSHLLPSPSRS 120
PG G + VK++ +VFRPF GE++ A + + + GL +G ++ H +PS
Sbjct: 61 PGRGFVLYPVKYKAIVFRPFKGEVVDAVVSQVNKVGLFTEIGPMS-CFISRHSIPSEMEF 119
Query: 121 EPDPYGRYEVKWIWEFGDTKYVIDGLDEIKFRVL 154
+P+ ++ D VI DEI+ +++
Sbjct: 120 DPNSN-----PPCYKTVDEDVVIQQGDEIRLKIV 148
>gi|156835988|ref|XP_001642239.1| hypothetical protein Kpol_186p3 [Vanderwaltozyma polyspora DSM
70294]
gi|156112712|gb|EDO14381.1| hypothetical protein Kpol_186p3 [Vanderwaltozyma polyspora DSM
70294]
Length = 171
Score = 61.2 bits (147), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 33/118 (27%), Positives = 59/118 (50%), Gaps = 3/118 (2%)
Query: 1 MFYLSKIEHTLRLPPHLLRLPLNEAIKLELENVFLDKVIANLG--LCISIYDIKEIEGGF 58
MF++ + + L P + + +K +L G LC+ YD EIE G
Sbjct: 1 MFFIKDLSLNITLHPSFFGPRMKQYLKTKLLQEVEGSCTGKFGYILCVLDYDKIEIERGR 60
Query: 59 VYPGEGASTHTVKFRLVVFRPFVGEIIAAKLKESDANGLRLSLGFFEDIYVPSHLLPS 116
+ P +G++ TVK+R +VF+PF GE++ + +G + +G + ++V HL+P
Sbjct: 61 ILPTDGSAEFTVKYRAIVFKPFKGEVVDGTVVSCSQHGFEVQVGPMK-VFVTKHLMPQ 117
>gi|227827957|ref|YP_002829737.1| DNA-directed RNA polymerase subunit E' [Sulfolobus islandicus
M.14.25]
gi|227830679|ref|YP_002832459.1| DNA-directed RNA polymerase subunit E' [Sulfolobus islandicus
L.S.2.15]
gi|229579586|ref|YP_002837985.1| DNA-directed RNA polymerase subunit E' [Sulfolobus islandicus
Y.G.57.14]
gi|229581749|ref|YP_002840148.1| DNA-directed RNA polymerase subunit E' [Sulfolobus islandicus
Y.N.15.51]
gi|229585224|ref|YP_002843726.1| DNA-directed RNA polymerase subunit E' [Sulfolobus islandicus
M.16.27]
gi|238620183|ref|YP_002915009.1| DNA-directed RNA polymerase subunit E' [Sulfolobus islandicus
M.16.4]
gi|284998206|ref|YP_003419973.1| DNA-directed RNA polymerase [Sulfolobus islandicus L.D.8.5]
gi|385773661|ref|YP_005646227.1| DNA-directed RNA polymerase [Sulfolobus islandicus HVE10/4]
gi|227457127|gb|ACP35814.1| DNA-directed RNA polymerase [Sulfolobus islandicus L.S.2.15]
gi|227459753|gb|ACP38439.1| DNA-directed RNA polymerase [Sulfolobus islandicus M.14.25]
gi|228010301|gb|ACP46063.1| DNA-directed RNA polymerase [Sulfolobus islandicus Y.G.57.14]
gi|228012465|gb|ACP48226.1| DNA-directed RNA polymerase [Sulfolobus islandicus Y.N.15.51]
gi|228020274|gb|ACP55681.1| DNA-directed RNA polymerase [Sulfolobus islandicus M.16.27]
gi|238381253|gb|ACR42341.1| DNA-directed RNA polymerase [Sulfolobus islandicus M.16.4]
gi|284446101|gb|ADB87603.1| DNA-directed RNA polymerase [Sulfolobus islandicus L.D.8.5]
gi|323477775|gb|ADX83013.1| DNA-directed RNA polymerase [Sulfolobus islandicus HVE10/4]
Length = 180
Score = 61.2 bits (147), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 47/156 (30%), Positives = 82/156 (52%), Gaps = 7/156 (4%)
Query: 1 MFYLSKIEHTLRLPPHLLRLPLNEAIKLELENVFLDKVIANLGLCISIYDIKEIEGGFVY 60
M+ L K +R+PP+ PLNE EL + +K++ +LGL ++I ++K E G +
Sbjct: 1 MYKLIKARSIVRIPPNEFGKPLNEIALNELRQQYQEKILKDLGLVLAILNVKTSEEGILV 60
Query: 61 PGEGASTHTVKFRLVVFRPFVGEIIAAKLKESDANGLRLSLGFFEDIYVPSHLLPSPSRS 120
G+GA+ H V+F ++ + P V E++ ++ + D G+ ++LG P L S+
Sbjct: 61 FGDGATYHEVEFDMITYVPVVQEVVEGEVLQVDNYGVFVNLG-------PMDGLVHISQI 113
Query: 121 EPDPYGRYEVKWIWEFGDTKYVIDGLDEIKFRVLSV 156
D V+ I +K VI D+++ RV+SV
Sbjct: 114 TDDTLKYDNVRGIIFGEKSKKVIQKGDKVRARVISV 149
>gi|149062301|gb|EDM12724.1| polymerase (RNA) II (DNA directed) polypeptide G, isoform CRA_c
[Rattus norvegicus]
Length = 159
Score = 61.2 bits (147), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 41/154 (26%), Positives = 69/154 (44%), Gaps = 6/154 (3%)
Query: 1 MFYLSKIEHTLRLPPHLLRLPLNEAIKLELENVFLDKVIANLGLCISIYDIKEIEGGFVY 60
MFY +EH + L P L +K +L G I++ I I G +
Sbjct: 1 MFYHISLEHEILLHPRYFGPNLLNTVKQKLFTEVEGTCTGKYGFVIAVTTIDNIGAGVIQ 60
Query: 61 PGEGASTHTVKFRLVVFRPFVGEIIAAKLKESDANGLRLSLGFFEDIYVPSHLLPSPSRS 120
PG G + VK++ +VFRPF GE++ A + + + GL +G ++ H +PS
Sbjct: 61 PGRGFVLYPVKYKAIVFRPFKGEVVDAVVTQVNKVGLFTEIGPMS-CFISRHSIPSEMEF 119
Query: 121 EPDPYGRYEVKWIWEFGDTKYVIDGLDEIKFRVL 154
+P+ ++ D VI DEI+ +++
Sbjct: 120 DPNSN-----PPCYKTMDEDIVIQQDDEIRLKIV 148
>gi|253743778|gb|EET00085.1| DNA-directed RNA polymerase III subunit 22.9 kDa polypeptide
[Giardia intestinalis ATCC 50581]
Length = 214
Score = 61.2 bits (147), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 38/116 (32%), Positives = 57/116 (49%), Gaps = 1/116 (0%)
Query: 1 MFYLSKIEHTLRLPPHLLRLPLNEAIKLELENVFLDKVIANLGLCISIYDIKEIEGGFVY 60
MF +I T+R+PP L + L F +V+AN G+C+ I I + +
Sbjct: 1 MFISLQIVDTVRVPPSSQTRYLESKLLEILTASFCGRVLANCGICLLIEKITNLSEQRIV 60
Query: 61 PGEGASTHTVKFRLVVFRPFVGEIIAAKL-KESDANGLRLSLGFFEDIYVPSHLLP 115
+ + TV F ++ FRP++GEI L + +GL LS GF + I VP LP
Sbjct: 61 QNDCNTYVTVHFSVIAFRPYIGEIFTTFLVSQHPMHGLALSTGFCDTILVPPSNLP 116
>gi|4505947|ref|NP_002687.1| DNA-directed RNA polymerase II subunit RPB7 [Homo sapiens]
gi|13385826|ref|NP_080605.1| DNA-directed RNA polymerase II subunit RPB7 [Mus musculus]
gi|16758826|ref|NP_446400.1| DNA-directed RNA polymerase II subunit RPB7 [Rattus norvegicus]
gi|62752835|ref|NP_001015633.1| DNA-directed RNA polymerase II subunit RPB7 [Bos taurus]
gi|388452830|ref|NP_001253453.1| DNA-directed RNA polymerase II subunit RPB7 [Macaca mulatta]
gi|57099729|ref|XP_533260.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB7 [Canis lupus
familiaris]
gi|291409522|ref|XP_002721043.1| PREDICTED: DNA directed RNA polymerase II polypeptide G
[Oryctolagus cuniculus]
gi|296218536|ref|XP_002755481.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB7 [Callithrix
jacchus]
gi|301779986|ref|XP_002925403.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB7-like
[Ailuropoda melanoleuca]
gi|332836746|ref|XP_001142605.2| PREDICTED: DNA-directed RNA polymerase II subunit RPB7 [Pan
troglodytes]
gi|335281668|ref|XP_003353863.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB7-like [Sus
scrofa]
gi|338712501|ref|XP_001495008.2| PREDICTED: DNA-directed RNA polymerase II subunit RPB7-like [Equus
caballus]
gi|354504568|ref|XP_003514346.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB7-like
[Cricetulus griseus]
gi|397516683|ref|XP_003828553.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB7 [Pan
paniscus]
gi|402893073|ref|XP_003909728.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB7 isoform 1
[Papio anubis]
gi|402893075|ref|XP_003909729.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB7 isoform 2
[Papio anubis]
gi|403255132|ref|XP_003920301.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB7 isoform 1
[Saimiri boliviensis boliviensis]
gi|403255134|ref|XP_003920302.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB7 isoform 2
[Saimiri boliviensis boliviensis]
gi|410974282|ref|XP_003993576.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB7 [Felis
catus]
gi|426368868|ref|XP_004051423.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB7 [Gorilla
gorilla gorilla]
gi|50403597|sp|P62489.1|RPB7_RAT RecName: Full=DNA-directed RNA polymerase II subunit RPB7;
Short=RNA polymerase II subunit B7; AltName:
Full=DNA-directed RNA polymerase II subunit G
gi|50403601|sp|P62487.1|RPB7_HUMAN RecName: Full=DNA-directed RNA polymerase II subunit RPB7;
Short=RNA polymerase II subunit B7; AltName:
Full=DNA-directed RNA polymerase II subunit G; AltName:
Full=RNA polymerase II 19 kDa subunit; Short=RPB19
gi|50403602|sp|P62488.1|RPB7_MOUSE RecName: Full=DNA-directed RNA polymerase II subunit RPB7;
Short=RNA polymerase II subunit B7; AltName:
Full=DNA-directed RNA polymerase II subunit G
gi|73917870|sp|Q5E9B8.1|RPB7_BOVIN RecName: Full=DNA-directed RNA polymerase II subunit RPB7;
Short=RNA polymerase II subunit B7; AltName:
Full=DNA-directed RNA polymerase II subunit G
gi|83754529|pdb|2C35|B Chain B, Subunits Rpb4 And Rpb7 Of Human Rna Polymerase Ii
gi|83754531|pdb|2C35|D Chain D, Subunits Rpb4 And Rpb7 Of Human Rna Polymerase Ii
gi|83754533|pdb|2C35|F Chain F, Subunits Rpb4 And Rpb7 Of Human Rna Polymerase Ii
gi|83754535|pdb|2C35|H Chain H, Subunits Rpb4 And Rpb7 Of Human Rna Polymerase Ii
gi|929921|gb|AAA86500.1| RNA polymerase II subunit hsRPB7 [Homo sapiens]
gi|1360132|emb|CAA96468.1| RNA polymerase II RPB7 subunit-like protein [Rattus norvegicus]
gi|1924974|gb|AAB96827.1| RNA polymerase II seventh subunit [Homo sapiens]
gi|12846312|dbj|BAB27119.1| unnamed protein product [Mus musculus]
gi|12847875|dbj|BAB27743.1| unnamed protein product [Mus musculus]
gi|12850308|dbj|BAB28670.1| unnamed protein product [Mus musculus]
gi|12856725|dbj|BAB30760.1| unnamed protein product [Mus musculus]
gi|33243991|gb|AAH55278.1| Polymerase (RNA) II (DNA directed) polypeptide G [Mus musculus]
gi|37514866|gb|AAH05580.3| Polymerase (RNA) II (DNA directed) polypeptide G [Mus musculus]
gi|38014576|gb|AAH60595.1| Polymerase (RNA) II (DNA directed) polypeptide G [Rattus
norvegicus]
gi|38051973|gb|AAH60550.1| Polymerase (RNA) II (DNA directed) polypeptide G [Rattus
norvegicus]
gi|59858369|gb|AAX09019.1| DNA directed RNA polymerase II polypeptide G [Bos taurus]
gi|85566845|gb|AAI12163.1| DNA directed RNA polymerase II polypeptide G [Homo sapiens]
gi|85567601|gb|AAI12165.1| DNA directed RNA polymerase II polypeptide G [Homo sapiens]
gi|119594498|gb|EAW74092.1| polymerase (RNA) II (DNA directed) polypeptide G, isoform CRA_c
[Homo sapiens]
gi|148701424|gb|EDL33371.1| polymerase (RNA) II (DNA directed) polypeptide G, isoform CRA_a
[Mus musculus]
gi|149062299|gb|EDM12722.1| polymerase (RNA) II (DNA directed) polypeptide G, isoform CRA_a
[Rattus norvegicus]
gi|189053261|dbj|BAG35067.1| unnamed protein product [Homo sapiens]
gi|208967084|dbj|BAG73556.1| polymerase (RNA) II (DNA directed) polypeptide G [synthetic
construct]
gi|296471655|tpg|DAA13770.1| TPA: DNA-directed RNA polymerase II subunit RPB7 [Bos taurus]
gi|380785401|gb|AFE64576.1| DNA-directed RNA polymerase II subunit RPB7 [Macaca mulatta]
gi|383414681|gb|AFH30554.1| DNA-directed RNA polymerase II subunit RPB7 [Macaca mulatta]
gi|384947774|gb|AFI37492.1| DNA-directed RNA polymerase II subunit RPB7 [Macaca mulatta]
gi|410267352|gb|JAA21642.1| polymerase (RNA) II (DNA directed) polypeptide G [Pan troglodytes]
gi|410294946|gb|JAA26073.1| polymerase (RNA) II (DNA directed) polypeptide G [Pan troglodytes]
gi|410351171|gb|JAA42189.1| polymerase (RNA) II (DNA directed) polypeptide G [Pan troglodytes]
gi|1098305|prf||2115374A RNA polymerase II
Length = 172
Score = 61.2 bits (147), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 41/154 (26%), Positives = 69/154 (44%), Gaps = 6/154 (3%)
Query: 1 MFYLSKIEHTLRLPPHLLRLPLNEAIKLELENVFLDKVIANLGLCISIYDIKEIEGGFVY 60
MFY +EH + L P L +K +L G I++ I I G +
Sbjct: 1 MFYHISLEHEILLHPRYFGPNLLNTVKQKLFTEVEGTCTGKYGFVIAVTTIDNIGAGVIQ 60
Query: 61 PGEGASTHTVKFRLVVFRPFVGEIIAAKLKESDANGLRLSLGFFEDIYVPSHLLPSPSRS 120
PG G + VK++ +VFRPF GE++ A + + + GL +G ++ H +PS
Sbjct: 61 PGRGFVLYPVKYKAIVFRPFKGEVVDAVVTQVNKVGLFTEIGPMS-CFISRHSIPSEMEF 119
Query: 121 EPDPYGRYEVKWIWEFGDTKYVIDGLDEIKFRVL 154
+P+ ++ D VI DEI+ +++
Sbjct: 120 DPNSN-----PPCYKTMDEDIVIQQDDEIRLKIV 148
>gi|41054447|ref|NP_955963.1| DNA-directed RNA polymerase II subunit RPB7 [Danio rerio]
gi|62858849|ref|NP_001017065.1| polymerase (RNA) II (DNA directed) polypeptide G [Xenopus
(Silurana) tropicalis]
gi|147900153|ref|NP_001091291.1| polymerase (RNA) II (DNA directed) polypeptide G [Xenopus laevis]
gi|50401534|sp|Q7ZW41.1|RPB7_DANRE RecName: Full=DNA-directed RNA polymerase II subunit RPB7;
Short=RNA polymerase II subunit B7
gi|28278826|gb|AAH45299.1| Polymerase (RNA) II (DNA directed) polypeptide G-like [Danio rerio]
gi|89266814|emb|CAJ83494.1| polymerase (RNA) II (DNA directed) polypeptide G [Xenopus
(Silurana) tropicalis]
gi|123959696|gb|AAI28969.1| LOC100037112 protein [Xenopus laevis]
gi|134025964|gb|AAI35153.1| hypothetical protein LOC549819 [Xenopus (Silurana) tropicalis]
gi|182890184|gb|AAI64883.1| Polr2gl protein [Danio rerio]
Length = 172
Score = 61.2 bits (147), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 41/154 (26%), Positives = 69/154 (44%), Gaps = 6/154 (3%)
Query: 1 MFYLSKIEHTLRLPPHLLRLPLNEAIKLELENVFLDKVIANLGLCISIYDIKEIEGGFVY 60
MFY +EH + L P L +K +L G I++ I I G +
Sbjct: 1 MFYHISLEHEILLHPRYFGPNLLNTVKQKLFTEVEGTCTGKYGFVIAVTTIDNIGAGVIQ 60
Query: 61 PGEGASTHTVKFRLVVFRPFVGEIIAAKLKESDANGLRLSLGFFEDIYVPSHLLPSPSRS 120
PG G + VK++ +VFRPF GE++ A + + + GL +G ++ H +PS
Sbjct: 61 PGRGFVLYPVKYKAIVFRPFKGEVVDAVVTQVNKVGLFTEIGPMS-CFISRHSIPSEMEF 119
Query: 121 EPDPYGRYEVKWIWEFGDTKYVIDGLDEIKFRVL 154
+P+ ++ D VI DEI+ +++
Sbjct: 120 DPNSN-----PPCYKTVDEDVVIQQDDEIRLKIV 148
>gi|134046224|ref|YP_001097709.1| DNA-directed RNA polymerase subunit E' [Methanococcus maripaludis
C5]
gi|132663849|gb|ABO35495.1| DNA-directed RNA polymerase, subunit E' [Methanococcus maripaludis
C5]
Length = 187
Score = 61.2 bits (147), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 48/192 (25%), Positives = 95/192 (49%), Gaps = 18/192 (9%)
Query: 1 MFYLSKIEHTLRLPPHLLRLPLNEAIKLELENVFLDKVIANLGLCISIYDIKEIEGGFVY 60
M+ + KI T+R+PP + PL+E +K L + + ++G +SI D+ E+ G +
Sbjct: 1 MYKILKISDTVRIPPKMFGNPLSENVKRVLMEKYEGILDKDIGFILSIVDVDEVSDGSII 60
Query: 61 PGEGASTHTVKFRLVVFRPFVGEIIAAKLKESDANGLRLSLGFFEDIYVPSHLLPSPSRS 120
G+GA+ H +F ++ + P + E++ ++ + G + LG + + S ++
Sbjct: 61 YGDGAAYHETEFNVLTYVPELQEVVDGEIVDVVEFGAFVRLGPLDGLIHISQIM------ 114
Query: 121 EPDPYGRYEVKWIWEFG-DTKYVIDGLDEIKFRVLSVNYPSIPIEQAEGSKPFAPMVING 179
D + ++ K G +T V++ D+++ R+++V S+ E+ GSK M N
Sbjct: 115 --DDFVSFDPKREAIIGKETGKVLEKGDKVRARIVAV---SLREEKKRGSKIALTMRQN- 168
Query: 180 SIDYDGLGPVSW 191
GLG + W
Sbjct: 169 -----GLGRLEW 175
>gi|332374930|gb|AEE62606.1| unknown [Dendroctonus ponderosae]
Length = 173
Score = 61.2 bits (147), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 34/123 (27%), Positives = 59/123 (47%), Gaps = 1/123 (0%)
Query: 1 MFYLSKIEHTLRLPPHLLRLPLNEAIKLELENVFLDKVIANLGLCISIYDIKEIEGGFVY 60
MFY +EH + L P L E +K +L G I++ I I G +
Sbjct: 1 MFYHISLEHEILLHPQYFGPQLLEKVKTKLYTEVEGTCTGKYGFVIAVTTIDHIGAGLIL 60
Query: 61 PGEGASTHTVKFRLVVFRPFVGEIIAAKLKESDANGLRLSLGFFEDIYVPSHLLPSPSRS 120
PG+G + VK++ +VFRPF GE++ A +++ + G+ +G ++ H +P+
Sbjct: 61 PGQGFVVYPVKYKAIVFRPFKGEVLDAVVRQVNKVGMFAEIGPL-SCFISHHSIPAEMEF 119
Query: 121 EPD 123
P+
Sbjct: 120 CPN 122
>gi|334332599|ref|XP_001362540.2| PREDICTED: DNA-directed RNA polymerase II subunit RPB7-like
[Monodelphis domestica]
Length = 201
Score = 61.2 bits (147), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 41/154 (26%), Positives = 69/154 (44%), Gaps = 6/154 (3%)
Query: 1 MFYLSKIEHTLRLPPHLLRLPLNEAIKLELENVFLDKVIANLGLCISIYDIKEIEGGFVY 60
MFY +EH + L P L +K +L G I++ I I G +
Sbjct: 1 MFYHISLEHEILLHPRYFGPNLLNTVKQKLFTEVEGTCTGKYGFVIAVTTIDNIGAGVIQ 60
Query: 61 PGEGASTHTVKFRLVVFRPFVGEIIAAKLKESDANGLRLSLGFFEDIYVPSHLLPSPSRS 120
PG G + VK++ +VFRPF GE++ A + + + GL +G ++ H +PS
Sbjct: 61 PGRGFVLYPVKYKAIVFRPFKGEVVDAVVTQVNKVGLFTEIGPMS-CFISRHSIPSEMEF 119
Query: 121 EPDPYGRYEVKWIWEFGDTKYVIDGLDEIKFRVL 154
+P+ ++ D VI DEI+ +++
Sbjct: 120 DPNSN-----PPCYKTVDEDIVIQQDDEIRLKIV 148
>gi|432878328|ref|XP_004073303.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB7-like
[Oryzias latipes]
Length = 171
Score = 61.2 bits (147), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 41/154 (26%), Positives = 69/154 (44%), Gaps = 6/154 (3%)
Query: 1 MFYLSKIEHTLRLPPHLLRLPLNEAIKLELENVFLDKVIANLGLCISIYDIKEIEGGFVY 60
MFY +EH + L P L +K +L G I++ I I G +
Sbjct: 1 MFYHISLEHEILLHPRYFGPNLLNTVKQKLFTEVEGTCTGKYGFVIAVTTIDNIGAGVIQ 60
Query: 61 PGEGASTHTVKFRLVVFRPFVGEIIAAKLKESDANGLRLSLGFFEDIYVPSHLLPSPSRS 120
PG G + VK++ +VFRPF GE++ A + + + GL +G ++ H +PS
Sbjct: 61 PGRGFVLYPVKYKAIVFRPFKGEVVDAVVTQVNKVGLFTEIGPMS-CFISRHSIPSEMEF 119
Query: 121 EPDPYGRYEVKWIWEFGDTKYVIDGLDEIKFRVL 154
+P+ ++ D VI DEI+ +++
Sbjct: 120 DPNSN-----PPCYKTVDEDIVIQQDDEIRLKIV 148
>gi|328852061|gb|EGG01210.1| hypothetical protein MELLADRAFT_50187 [Melampsora larici-populina
98AG31]
Length = 172
Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 31/123 (25%), Positives = 60/123 (48%), Gaps = 1/123 (0%)
Query: 1 MFYLSKIEHTLRLPPHLLRLPLNEAIKLELENVFLDKVIANLGLCISIYDIKEIEGGFVY 60
MF++ ++ HT+ L P ++ +L G I++ I+ I G +
Sbjct: 1 MFFIKELSHTINLHPSFFGPRTQSFLEDKLNRDVEGTCTGRFGYIIAVLSIRSISAGTIQ 60
Query: 61 PGEGASTHTVKFRLVVFRPFVGEIIAAKLKESDANGLRLSLGFFEDIYVPSHLLPSPSRS 120
PG G + +K+ +V +PF GE++ + + + G + +G + +V SHL+PS R
Sbjct: 61 PGTGMAEFVIKYSAIVLKPFKGEVVDGIVGQVNKMGFFVEVGPLQ-AFVSSHLIPSDLRF 119
Query: 121 EPD 123
+P+
Sbjct: 120 DPN 122
>gi|260787962|ref|XP_002589020.1| hypothetical protein BRAFLDRAFT_124918 [Branchiostoma floridae]
gi|229274193|gb|EEN45031.1| hypothetical protein BRAFLDRAFT_124918 [Branchiostoma floridae]
Length = 172
Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 42/154 (27%), Positives = 69/154 (44%), Gaps = 6/154 (3%)
Query: 1 MFYLSKIEHTLRLPPHLLRLPLNEAIKLELENVFLDKVIANLGLCISIYDIKEIEGGFVY 60
MFY +EH + L P L +K +L G I++ I I G +
Sbjct: 1 MFYHISLEHEILLHPRYFGPNLLNTVKQKLFTEVEGTCTGKYGFVIAVTTIDNIGVGAIQ 60
Query: 61 PGEGASTHTVKFRLVVFRPFVGEIIAAKLKESDANGLRLSLGFFEDIYVPSHLLPSPSRS 120
PG G + VK++ +VFRPF GE++ A + + + GL +G +V H +PS
Sbjct: 61 PGRGFVLYPVKYKAIVFRPFKGEVVDAVVTQVNKVGLFTEVGPMS-CFVSRHSIPSDMEF 119
Query: 121 EPDPYGRYEVKWIWEFGDTKYVIDGLDEIKFRVL 154
+P+ ++ D VI DEI+ +++
Sbjct: 120 DPNSN-----PPCYKTADEDVVIQQDDEIRIKIV 148
>gi|149641280|ref|XP_001511485.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB7-like
[Ornithorhynchus anatinus]
gi|348514213|ref|XP_003444635.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB7-like
[Oreochromis niloticus]
gi|395544392|ref|XP_003774094.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB7 [Sarcophilus
harrisii]
gi|410913687|ref|XP_003970320.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB7-like
[Takifugu rubripes]
gi|229367270|gb|ACQ58615.1| DNA-directed RNA polymerase II subunit RPB7 [Anoplopoma fimbria]
Length = 172
Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 41/154 (26%), Positives = 69/154 (44%), Gaps = 6/154 (3%)
Query: 1 MFYLSKIEHTLRLPPHLLRLPLNEAIKLELENVFLDKVIANLGLCISIYDIKEIEGGFVY 60
MFY +EH + L P L +K +L G I++ I I G +
Sbjct: 1 MFYHISLEHEILLHPRYFGPNLLNTVKQKLFTEVEGTCTGKYGFVIAVTTIDNIGAGVIQ 60
Query: 61 PGEGASTHTVKFRLVVFRPFVGEIIAAKLKESDANGLRLSLGFFEDIYVPSHLLPSPSRS 120
PG G + VK++ +VFRPF GE++ A + + + GL +G ++ H +PS
Sbjct: 61 PGRGFVLYPVKYKAIVFRPFKGEVVDAVVTQVNKVGLFTEIGPMS-CFISRHSIPSEMEF 119
Query: 121 EPDPYGRYEVKWIWEFGDTKYVIDGLDEIKFRVL 154
+P+ ++ D VI DEI+ +++
Sbjct: 120 DPNSN-----PPCYKTVDEDIVIQQDDEIRLKIV 148
>gi|374633213|ref|ZP_09705580.1| DNA-directed RNA polymerase subunit E' [Metallosphaera
yellowstonensis MK1]
gi|373524697|gb|EHP69574.1| DNA-directed RNA polymerase subunit E' [Metallosphaera
yellowstonensis MK1]
Length = 176
Score = 60.8 bits (146), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 41/161 (25%), Positives = 81/161 (50%), Gaps = 9/161 (5%)
Query: 1 MFYLSKIEHTLRLPPHLLRLPLNEAIKLE-LENVFLDKVIANLGLCISIYDIKEIEGGFV 59
MF L + +R+PP PL+ I L+ L+N + +++ +LGL +++ K E G +
Sbjct: 1 MFKLVRARGVVRIPPDQFGGPLD-VIALDILKNEYQERLFKDLGLVLTVTKAKVSEEGMI 59
Query: 60 YPGEGASTHTVKFRLVVFRPFVGEIIAAKLKESDANGLRLSLGFFEDIYVPSHLLPSPSR 119
G+GA+ H V+F L+ F P + E+I + + D G+ +++G P L S+
Sbjct: 60 VFGDGATYHEVEFELLTFSPIIQEVIEGDITQVDNYGVYVNMG-------PMDGLVHVSQ 112
Query: 120 SEPDPYGRYEVKWIWEFGDTKYVIDGLDEIKFRVLSVNYPS 160
D Y +++ +K V D ++ R+++++ +
Sbjct: 113 IGDDNYRFDQIRGTLVGERSKKVFQKGDFVRARIMTISTAA 153
>gi|170030019|ref|XP_001842888.1| DNA-directed RNA polymerase II 19 kDa polypeptide [Culex
quinquefasciatus]
gi|167865348|gb|EDS28731.1| DNA-directed RNA polymerase II 19 kDa polypeptide [Culex
quinquefasciatus]
Length = 173
Score = 60.8 bits (146), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 34/123 (27%), Positives = 60/123 (48%), Gaps = 1/123 (0%)
Query: 1 MFYLSKIEHTLRLPPHLLRLPLNEAIKLELENVFLDKVIANLGLCISIYDIKEIEGGFVY 60
MFY +EH + L P L E +K +L G I++ I +I G +
Sbjct: 1 MFYHISLEHEILLHPRYFGPQLIETVKQKLYTEVEGTCTGKYGFVIAVTTIDDIGSGVIQ 60
Query: 61 PGEGASTHTVKFRLVVFRPFVGEIIAAKLKESDANGLRLSLGFFEDIYVPSHLLPSPSRS 120
PG+G + VK++ +VFRPF GE++ A + + + G+ +G ++ H +P+ +
Sbjct: 61 PGQGFVVYPVKYKAIVFRPFKGEVLDAVVTQVNKVGMFAEIGPLS-CFISHHSIPADMQF 119
Query: 121 EPD 123
P+
Sbjct: 120 CPN 122
>gi|303321536|ref|XP_003070762.1| DNA-directed RNA polymerase III subunit 22.9 kDa polypeptide,
putative [Coccidioides posadasii C735 delta SOWgp]
gi|240110459|gb|EER28617.1| DNA-directed RNA polymerase III subunit 22.9 kDa polypeptide,
putative [Coccidioides posadasii C735 delta SOWgp]
Length = 144
Score = 60.8 bits (146), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 45/155 (29%), Positives = 73/155 (47%), Gaps = 20/155 (12%)
Query: 46 ISIYDIKEIEGGFVYPGEGASTHTVKFRLVVFRPFVGEIIAAKLKESDANGLRLSLGFFE 105
+ YD+ E G + G G + VFRPF GE+I K+ G+++ L FF
Sbjct: 1 MGFYDLLESSDGLIGHGTGL------VNVNVFRPFKGEVILGKITSGTEQGIKIGLEFFN 54
Query: 106 DIYVPSHLLPSPSRSEPDPYGRYEVKWIWEFGD-TKYVIDGLDEIKFRVLSVNY----PS 160
DI +P LL ++ + + W+W+ G+ + D + ++FRV + + P+
Sbjct: 55 DILIPPSLLLDGAK-----FDYTDQVWVWDNGEGATFYFDIGETVRFRVEAEEWHDQIPN 109
Query: 161 IPIEQAEGSKPFA---PMVINGSIDYDGLGPVSWW 192
P + +GS P I GS+ GLG V+WW
Sbjct: 110 AP-DMPDGSSAVERKPPYSIIGSMQIAGLGLVAWW 143
>gi|50287313|ref|XP_446086.1| hypothetical protein [Candida glabrata CBS 138]
gi|49525393|emb|CAG59010.1| unnamed protein product [Candida glabrata]
gi|114049595|emb|CAL07955.1| hypothetical protein [Candida glabrata]
Length = 171
Score = 60.8 bits (146), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 34/118 (28%), Positives = 58/118 (49%), Gaps = 3/118 (2%)
Query: 1 MFYLSKIEHTLRLPPHLLRLPLNEAIKLELENVFLDKVIANLG--LCISIYDIKEIEGGF 58
MF++ + + L P + + IK +L G LC+ YD EIE G
Sbjct: 1 MFFIKDLSLNVTLHPSFFGPRMKQYIKTKLLQEVEGSCTGKFGYILCVLDYDNIEIERGR 60
Query: 59 VYPGEGASTHTVKFRLVVFRPFVGEIIAAKLKESDANGLRLSLGFFEDIYVPSHLLPS 116
+ P +G++ VK+R VVF+PF GE++ + +G + +G + ++V HL+P
Sbjct: 61 ILPTDGSAEFNVKYRAVVFKPFKGEVVDGTVVSCSQHGFEVQVGPMK-VFVTKHLMPQ 117
>gi|300707517|ref|XP_002995963.1| hypothetical protein NCER_101022 [Nosema ceranae BRL01]
gi|239605211|gb|EEQ82292.1| hypothetical protein NCER_101022 [Nosema ceranae BRL01]
Length = 177
Score = 60.8 bits (146), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 50/201 (24%), Positives = 93/201 (46%), Gaps = 34/201 (16%)
Query: 1 MFYLSKIEHTLRLPPHLLRLPLNEAIKLELENV----FLDKVIANLGLCISI---YDIKE 53
MF S+IE +++ P E +KL + N+ + +K I+ +G+ I I +D+
Sbjct: 1 MFVESEIEDCIKIYPS------TEDVKLAIYNILNQKYRNKYISKMGIGIFISKNFDV-- 52
Query: 54 IEGGFVYPGEGASTHTVKFRLVVFRPFVGEIIAAKLKESDANGLRLSLGFFEDIYVPSHL 113
IE V E + ++F + R EI+ + + NG+ +S+ F++ IY+P
Sbjct: 53 IERKCV---EDFILYKIQFNIFFCRFLKDEILEGVISDQKDNGIFVSIHFYDKIYIPIEY 109
Query: 114 LPSPSRSE--PDPYGRYEVKWIWEFGDTKYVIDGLDEIKFRVLSVNYPSIPIEQAEGSKP 171
LP S D + W+W + ++++ I D IK++V + ++ G
Sbjct: 110 LPDNSEITYVYDENKNKSLVWVWNYKNSRFYIKSNDVIKYKV-------VRYDEKHGR-- 160
Query: 172 FAPMVINGSIDYDGLGPVSWW 192
+ +I GLGP++WW
Sbjct: 161 -----LIATIKDSGLGPINWW 176
>gi|365981979|ref|XP_003667823.1| hypothetical protein NDAI_0A04230 [Naumovozyma dairenensis CBS 421]
gi|343766589|emb|CCD22580.1| hypothetical protein NDAI_0A04230 [Naumovozyma dairenensis CBS 421]
Length = 171
Score = 60.5 bits (145), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 33/118 (27%), Positives = 59/118 (50%), Gaps = 3/118 (2%)
Query: 1 MFYLSKIEHTLRLPPHLLRLPLNEAIKLELENVFLDKVIANLG--LCISIYDIKEIEGGF 58
MF++ + + L P + + +K +L G LC+ YD EIE G
Sbjct: 1 MFFIKDLSLNITLHPSFFGPRMKQFLKTKLLQEVEGSCTGKFGYILCVLDYDKIEIERGR 60
Query: 59 VYPGEGASTHTVKFRLVVFRPFVGEIIAAKLKESDANGLRLSLGFFEDIYVPSHLLPS 116
+ P +G++ VK+R +VF+PF GE++ + +G + +G + ++V HL+PS
Sbjct: 61 ILPTDGSAEFNVKYRAIVFKPFKGEVVDGTVVSCSQHGFEVQVGPMK-VFVTKHLMPS 117
>gi|366988751|ref|XP_003674143.1| hypothetical protein NCAS_0A12040 [Naumovozyma castellii CBS 4309]
gi|342300006|emb|CCC67762.1| hypothetical protein NCAS_0A12040 [Naumovozyma castellii CBS 4309]
Length = 171
Score = 60.5 bits (145), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 33/118 (27%), Positives = 59/118 (50%), Gaps = 3/118 (2%)
Query: 1 MFYLSKIEHTLRLPPHLLRLPLNEAIKLELENVFLDKVIANLG--LCISIYDIKEIEGGF 58
MF++ + + L P + + +K +L G LC+ YD EIE G
Sbjct: 1 MFFIKDLSLNITLHPSFFGPRMKQFLKTKLLQEVEGSCTGKFGYILCVLDYDKIEIERGR 60
Query: 59 VYPGEGASTHTVKFRLVVFRPFVGEIIAAKLKESDANGLRLSLGFFEDIYVPSHLLPS 116
+ P +G++ VK+R +VF+PF GE++ + +G + +G + ++V HL+PS
Sbjct: 61 ILPTDGSAEFQVKYRAIVFKPFKGEVVDGTVVSCSQHGFEVQVGPMK-VFVTKHLMPS 117
>gi|409096803|ref|ZP_11216827.1| DNA-directed RNA polymerase subunit E' [Thermococcus zilligii AN1]
Length = 186
Score = 60.5 bits (145), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 41/166 (24%), Positives = 84/166 (50%), Gaps = 9/166 (5%)
Query: 1 MFYLSKIEHTLRLPPHLLRLPLNEAIKLELENVFLDKVIANLGLCISIYDIKEIEGGFVY 60
M+ L K++ +R+PP + + EA K L + + G+ +++ D++EI G +
Sbjct: 1 MYKLLKVKDVVRIPPRMFTMEPKEAAKEVLRKTYEGIYDRDEGVVLAVMDVEEISEGVIV 60
Query: 61 PGEGASTHTVKFRLVVFRPFVGEIIAAKLKESDANGLRLSLGFFEDIYVPSHLLPSPSRS 120
PG+GA+ H V F ++V++P + EI+ ++ + G + +G + + S L+
Sbjct: 61 PGDGATYHEVVFNVLVWQPHMHEIVEGEVIDVAPYGAFIRIGPMDGLVHISQLM------ 114
Query: 121 EPDPYGRYEVKWIWEFG-DTKYVIDGLDEIKFRVLSVNYPSIPIEQ 165
D Y ++ K G +TK + DE + R+++++ S I +
Sbjct: 115 --DDYVVFDEKNKQFLGKETKRTLKLGDEARARIIAISVKSRVIRE 158
>gi|354469798|ref|XP_003497310.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB7-like
[Cricetulus griseus]
Length = 172
Score = 60.5 bits (145), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 36/123 (29%), Positives = 58/123 (47%), Gaps = 1/123 (0%)
Query: 1 MFYLSKIEHTLRLPPHLLRLPLNEAIKLELENVFLDKVIANLGLCISIYDIKEIEGGFVY 60
MFY +EH + L P L +K +L I++ I I G +
Sbjct: 1 MFYHISLEHEILLHPCYFGPNLLNTVKQKLFTEVEGTCKGKYDFVIAVTTIDNIGAGEIQ 60
Query: 61 PGEGASTHTVKFRLVVFRPFVGEIIAAKLKESDANGLRLSLGFFEDIYVPSHLLPSPSRS 120
PG+G HTVKF+ +VF+PF GE++ A + + + GL +G ++ H +PS
Sbjct: 61 PGQGFDLHTVKFKAIVFQPFKGEVVDAVVTQVNKVGLFTEIGPMS-CFISRHSIPSEMEF 119
Query: 121 EPD 123
+P+
Sbjct: 120 DPN 122
>gi|415999|emb|CAA53164.1| DNA-directed RNA polymerase [Sulfolobus acidocaldarius]
Length = 248
Score = 60.5 bits (145), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 32/103 (31%), Positives = 63/103 (61%), Gaps = 2/103 (1%)
Query: 1 MFYLSKIEHTLRLPPHLLRLPLNE-AIKLELENVFLDKVIANLGLCISIYDIKEIEGGFV 59
MF L + + +R+PP ++E AIK+ L + +K+I ++G+ + I + K E GF+
Sbjct: 1 MFKLVRAKGIVRIPPEYFGQSVDEIAIKI-LRQEYQEKLIKDIGVVLGIVNAKASEEGFI 59
Query: 60 YPGEGASTHTVKFRLVVFRPFVGEIIAAKLKESDANGLRLSLG 102
G+GA+ H V+F ++V+ P + E+I ++ + D G+ +++G
Sbjct: 60 IFGDGATYHEVEFDMLVYTPIIHEVIEGEVSQVDNYGVYVNMG 102
>gi|229367494|gb|ACQ58727.1| DNA-directed RNA polymerase II subunit RPB7 [Anoplopoma fimbria]
Length = 172
Score = 60.5 bits (145), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 41/154 (26%), Positives = 69/154 (44%), Gaps = 6/154 (3%)
Query: 1 MFYLSKIEHTLRLPPHLLRLPLNEAIKLELENVFLDKVIANLGLCISIYDIKEIEGGFVY 60
MFY +EH + L P L +K +L G I++ I I G +
Sbjct: 1 MFYHISLEHEILLHPRYFGPNLLNTVKQKLFTEVEGTCTGKYGFVIAVTTIDNIGAGVIQ 60
Query: 61 PGEGASTHTVKFRLVVFRPFVGEIIAAKLKESDANGLRLSLGFFEDIYVPSHLLPSPSRS 120
PG G + VK++ +VFRPF GE++ A + + + GL +G ++ H +PS
Sbjct: 61 PGGGFVLYPVKYKAIVFRPFKGEVVDAVVTQVNKVGLFTEIGPMS-CFISRHSIPSEMEF 119
Query: 121 EPDPYGRYEVKWIWEFGDTKYVIDGLDEIKFRVL 154
+P+ ++ D VI DEI+ +++
Sbjct: 120 DPNSN-----PPCYKTVDEDIVIQQDDEIRLKIV 148
>gi|219879810|ref|NP_001137380.1| RNA polymerase II subunit 7 [Nasonia vitripennis]
Length = 173
Score = 60.5 bits (145), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 38/159 (23%), Positives = 70/159 (44%), Gaps = 14/159 (8%)
Query: 1 MFYLSKIEHTLRLPPHLLRLPLNEAIKLELENVFLDKVIANLGLCISIYDIKEIEGGFVY 60
MFY +EH + L P L + +K +L G +++ I I G +
Sbjct: 1 MFYHISLEHEILLHPRYFGPQLLDTVKQKLYTEVEGNCTGKYGFVVAVTTIDNIGAGIIQ 60
Query: 61 PGEGASTHTVKFRLVVFRPFVGEIIAAKLKESDANGLRLSLG----FFEDIYVPSHLLPS 116
PG+G + VK++ +VFRPF GE++ + + + G+ +G F +P+ +
Sbjct: 61 PGQGFVVYPVKYKAIVFRPFKGEVLDGIVTQVNKVGMFAEIGPLSCFISHHSIPADMQFC 120
Query: 117 PSRSEPDPYGRYEVKWIWEFGDTKYVIDGLDEIKFRVLS 155
P+ + P ++ D VI DEI+ +++
Sbjct: 121 PNVNPP----------CYKSKDEDVVIQADDEIRLKIVG 149
>gi|170592835|ref|XP_001901170.1| polymerase [Brugia malayi]
gi|158591237|gb|EDP29850.1| polymerase, putative [Brugia malayi]
Length = 171
Score = 60.1 bits (144), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 42/161 (26%), Positives = 70/161 (43%), Gaps = 19/161 (11%)
Query: 1 MFYLSKIEHTLRLPPHLLRLPLNEAIKLELENVFLDKVIANLGLCISIYDIKEIEGGFVY 60
MFY ++H + L P L E +K +L N G +++ I I G +
Sbjct: 1 MFYHIPLDHEICLHPKYFGPDLLETVKRKLFNEVEGTCTGKYGFVVAVTTIDNIGAGLIQ 60
Query: 61 PGEGASTHTVKFRLVVFRPFVGEIIAAKLKESDANGLRLSLGFFEDI-----YVPSHLLP 115
PG G + VK++ +VFRPF G+++ A + + +G F DI +V H +P
Sbjct: 61 PGRGFVLYPVKYKAIVFRPFKGQVVDAVVNQ---------VGLFCDIGPLSCFVSRHCIP 111
Query: 116 SPSRSEPDPYGRYEVKWIWEFGDTKYVIDGLDEIKFRVLSV 156
EP+ ++ D VI DEI+ +++
Sbjct: 112 PDMEFEPN-----SNPPCYKTADESVVIKQDDEIRVKLIGT 147
>gi|385776296|ref|YP_005648864.1| DNA-directed RNA polymerase [Sulfolobus islandicus REY15A]
gi|323475044|gb|ADX85650.1| DNA-directed RNA polymerase [Sulfolobus islandicus REY15A]
Length = 180
Score = 60.1 bits (144), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 47/156 (30%), Positives = 82/156 (52%), Gaps = 7/156 (4%)
Query: 1 MFYLSKIEHTLRLPPHLLRLPLNEAIKLELENVFLDKVIANLGLCISIYDIKEIEGGFVY 60
M+ L K +R+PP+ PLNE EL + +K++ +LGL ++I ++K E G +
Sbjct: 1 MYKLIKARSIVRIPPNEFGKPLNEIALNELRQQYQEKILKDLGLVLAILNVKISEEGILV 60
Query: 61 PGEGASTHTVKFRLVVFRPFVGEIIAAKLKESDANGLRLSLGFFEDIYVPSHLLPSPSRS 120
G+GA+ H V+F ++ + P V E++ ++ + D G+ ++LG P L S+
Sbjct: 61 FGDGATYHEVEFDMITYVPVVQEVVEGEVLQVDNYGVFVNLG-------PMDGLVHISQI 113
Query: 121 EPDPYGRYEVKWIWEFGDTKYVIDGLDEIKFRVLSV 156
D V+ I +K VI D+++ RV+SV
Sbjct: 114 TDDTLKYDNVRGIIFGEKSKKVIQKGDKVRARVISV 149
>gi|378755263|gb|EHY65290.1| hypothetical protein NERG_01736 [Nematocida sp. 1 ERTm2]
Length = 174
Score = 60.1 bits (144), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 54/201 (26%), Positives = 90/201 (44%), Gaps = 36/201 (17%)
Query: 1 MFYLSKIEHTLRLPPHLLRLPLNEAIKLELENVFLDKVIANLGLCI------SIYDIKEI 54
MF + L++ P+ ++ AI L+ K + +G+C+ S+ D+ EI
Sbjct: 1 MFIETVQTERLQISPN--EKDIHAAILATLQKKVPGKTVDGIGICLFPVCIHSVSDV-EI 57
Query: 55 EGGFVYPGEGASTHTVKFRLVVFRPFVGEIIAAKLKESDANGLRLSLGFFEDIYVPSHLL 114
G +YP V ++LV ++ VGE++ +++ DA GL LS ++VP+ +
Sbjct: 58 HEGMLYP-------LVVYKLVTYKALVGEVLTCTVEKQDATGLLLSHPLLPSLFVPASQI 110
Query: 115 PSPSRSEPDPYGRYEVK---WIWEFGDTKYVIDGLDEIKFRVLSVNYPSIPIEQAEGSKP 171
P PS GR W W++ D + + K ++S EGS+
Sbjct: 111 P-PSSELTAVSGRMGSTVDIWGWKYNDCILYVRMGEACKVSIIS----------TEGSRI 159
Query: 172 FAPMVINGSIDYDGLGPVSWW 192
+A SI+ GLGP SWW
Sbjct: 160 YA------SINGPGLGPTSWW 174
>gi|297742840|emb|CBI35598.3| unnamed protein product [Vitis vinifera]
Length = 181
Score = 60.1 bits (144), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 30/52 (57%), Positives = 38/52 (73%), Gaps = 5/52 (9%)
Query: 1 MFYLSKIEHTLRLPPHLLRLPLNEAIKLELENVFLDKVIANLGLCISIYDIK 52
MF+LS IEHT++L PHLL LPLNEA+K E E++FLDK G C S+ + K
Sbjct: 1 MFFLSLIEHTVQLRPHLLDLPLNEAVKGEFESLFLDK-----GWCASVLNQK 47
>gi|119195677|ref|XP_001248442.1| conserved hypothetical protein [Coccidioides immitis RS]
Length = 164
Score = 60.1 bits (144), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 50/200 (25%), Positives = 83/200 (41%), Gaps = 45/200 (22%)
Query: 1 MFYLSKIEHTLRLPPHLLRLPLNEAIKLELENVFLDKVIANLGLCISIYDIKEIEGGFVY 60
MF L+ I +++ P AI+ + + +KVI N+GL
Sbjct: 1 MFILTTISDLVQISPEDFSKLSAVAIEDNINEKYANKVIQNVGL---------------- 44
Query: 61 PGEGASTHTVKFRLVVFRPFVGEIIAAKLKESDANGLRLSLGFFEDIYVPSHLLPSPSRS 120
FRPF GE+I K+ G+++ L FF DI +P LL ++
Sbjct: 45 ---------------FFRPFKGEVILGKITSGTEQGIKIGLEFFNDILIPPSLLLDGAK- 88
Query: 121 EPDPYGRYEVKWIWEFGD-TKYVIDGLDEIKFRVLSV-------NYPSIPIEQAEGSKPF 172
+ + W+W+ G+ + D + ++FRV + N P +P + +
Sbjct: 89 ----FDYTDQVWVWDNGEGATFYFDIGETVRFRVEAEEWHDQIPNAPDMPDGSSAVERKP 144
Query: 173 APMVINGSIDYDGLGPVSWW 192
A +I GS+ GLG V+WW
Sbjct: 145 AYSII-GSMQIAGLGLVAWW 163
>gi|401827304|ref|XP_003887744.1| DNA-directed RNA polymerase subunit E' [Encephalitozoon hellem ATCC
50504]
gi|392998751|gb|AFM98763.1| DNA-directed RNA polymerase subunit E' [Encephalitozoon hellem ATCC
50504]
Length = 177
Score = 60.1 bits (144), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 46/193 (23%), Positives = 89/193 (46%), Gaps = 18/193 (9%)
Query: 1 MFYLSKIEHTLRLPPHLLRLPLNEAIKLELENVFLDKVIANLGLCISIYDIKEIEGGFVY 60
MFY +IE +++ L + + +L+ ++ +++ + +CI + I + VY
Sbjct: 1 MFYSVEIEDRIKISLEN-GLEKEKEVFEKLKRKYVGRILEDGSICIVVMSIVNVCEYKVY 59
Query: 61 PGEGASTHTVKFRLVVFRPFVGEIIAAKLKESDANGLRLSLGFFEDIYVPSHLLPSPS-R 119
+ V+F ++F+ F E++ + E +G+RL + FF D++V LP + R
Sbjct: 60 --DEFLLAKVEFEALLFKFFEYEVVCGTILEQKEDGMRLCVPFFSDLFVKRSGLPDVTER 117
Query: 120 SEPDPYGRYEVKWIWEFGDTKYVIDGLDEIKFRVLSVNYPSIPIEQAEGSKPFAPMVING 179
+ G ++ W+W + K ++FRVL GS+ +P V+
Sbjct: 118 AYVSDCGEKQLAWVWMYRGNKLYFRRNAYVRFRVL-------------GSEEKSPFVL-C 163
Query: 180 SIDYDGLGPVSWW 192
+ GLGP+ WW
Sbjct: 164 DLGEAGLGPLEWW 176
>gi|444319100|ref|XP_004180207.1| hypothetical protein TBLA_0D01800 [Tetrapisispora blattae CBS 6284]
gi|387513249|emb|CCH60688.1| hypothetical protein TBLA_0D01800 [Tetrapisispora blattae CBS 6284]
Length = 171
Score = 59.7 bits (143), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 32/118 (27%), Positives = 59/118 (50%), Gaps = 3/118 (2%)
Query: 1 MFYLSKIEHTLRLPPHLLRLPLNEAIKLELENVFLDKVIANLG--LCISIYDIKEIEGGF 58
MF++ + + L P + + +K +L G LC+ YD +IE G
Sbjct: 1 MFFIKDLSLNITLHPSFFGPRMKQYLKTKLLQEVEGSCTGKFGYILCVLDYDKIDIERGR 60
Query: 59 VYPGEGASTHTVKFRLVVFRPFVGEIIAAKLKESDANGLRLSLGFFEDIYVPSHLLPS 116
+ P +G++ TV++R VVF+PF GE++ + +G + +G + ++V HL+P
Sbjct: 61 IIPTDGSAEFTVRYRAVVFKPFKGEVVDGTVVSCSQHGFEVQVGPMK-VFVTKHLMPQ 117
>gi|410080111|ref|XP_003957636.1| hypothetical protein KAFR_0E03500 [Kazachstania africana CBS 2517]
gi|372464222|emb|CCF58501.1| hypothetical protein KAFR_0E03500 [Kazachstania africana CBS 2517]
Length = 171
Score = 59.7 bits (143), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 33/118 (27%), Positives = 58/118 (49%), Gaps = 3/118 (2%)
Query: 1 MFYLSKIEHTLRLPPHLLRLPLNEAIKLELENVFLDKVIANLG--LCISIYDIKEIEGGF 58
MF++ + + L P + + +K +L G LC+ YD EIE G
Sbjct: 1 MFFIKDLSLNITLHPSFFGPRMKQYLKTKLLQEVEGSCTGKFGYILCVLNYDQIEIERGR 60
Query: 59 VYPGEGASTHTVKFRLVVFRPFVGEIIAAKLKESDANGLRLSLGFFEDIYVPSHLLPS 116
+ P +G++ VK+R VVF+PF GE++ + +G + +G + ++V HL+P
Sbjct: 61 ILPTDGSAEFKVKYRAVVFKPFKGEVVDGTVVSCSQHGFEVQVGPMK-VFVTKHLMPQ 117
>gi|296109734|ref|YP_003616683.1| DNA-directed RNA polymerase [methanocaldococcus infernus ME]
gi|295434548|gb|ADG13719.1| DNA-directed RNA polymerase [Methanocaldococcus infernus ME]
Length = 184
Score = 59.7 bits (143), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 50/192 (26%), Positives = 95/192 (49%), Gaps = 18/192 (9%)
Query: 1 MFYLSKIEHTLRLPPHLLRLPLNEAIKLELENVFLDKVIANLGLCISIYDIKEIEGGFVY 60
M+ + ++ +R+PP L E +K L + + NLG +SI D+KEI G V
Sbjct: 1 MYKILEVADVVRIPPSKFGSDLKETVKEILIEKYEGMLEKNLGFVLSIIDVKEIGEGRVI 60
Query: 61 PGEGASTHTVKFRLVVFRPFVGEIIAAKLKESDANGLRLSLGFFEDIYVPSHLLPSPSRS 120
G+G++ H V F ++++P + E++ ++ + GL + LG + + S ++
Sbjct: 61 HGDGSAYHPVVFEALIYKPEIYELVEGEVVDVVDFGLFVRLGPLDGLVHVSQIM------ 114
Query: 121 EPDPYGRYEVKWIWEFGD-TKYVIDGLDEIKFRVLSVNYPSIPIEQAEGSKPFAPMVING 179
D Y Y+ K G+ TK V++ D ++ R+++++ S ++ GSK I
Sbjct: 115 --DDYVSYDPKREAIIGNETKKVVEVGDTVRARIVAISLKS---DRKRGSK------IAL 163
Query: 180 SIDYDGLGPVSW 191
++ GLG + W
Sbjct: 164 TMRQPGLGKMEW 175
>gi|444711067|gb|ELW52021.1| TAF6-like RNA polymerase II p300/CBP-associated factor-associated
factor 65 kDa subunit 6L [Tupaia chinensis]
Length = 820
Score = 59.3 bits (142), Expect = 7e-07, Method: Composition-based stats.
Identities = 35/123 (28%), Positives = 57/123 (46%), Gaps = 1/123 (0%)
Query: 1 MFYLSKIEHTLRLPPHLLRLPLNEAIKLELENVFLDKVIANLGLCISIYDIKEIEGGFVY 60
MFY +EH + L P L +K +L G I++ I I G +
Sbjct: 1 MFYHISLEHEILLHPRYFGPNLLNTVKQKLFTEVEGTCTGKYGFVIAVTTIDNIGAGVIQ 60
Query: 61 PGEGASTHTVKFRLVVFRPFVGEIIAAKLKESDANGLRLSLGFFEDIYVPSHLLPSPSRS 120
PG G + VK++ +VFRPF GE++ A + + + GL +G ++ H +PS
Sbjct: 61 PGRGFVLYPVKYKAIVFRPFKGEVVDAIVTQVNKVGLFTEIGPMS-CFISRHSIPSEMEF 119
Query: 121 EPD 123
+P+
Sbjct: 120 DPN 122
>gi|443718113|gb|ELU08859.1| hypothetical protein CAPTEDRAFT_177843 [Capitella teleta]
Length = 172
Score = 59.3 bits (142), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 35/123 (28%), Positives = 57/123 (46%), Gaps = 1/123 (0%)
Query: 1 MFYLSKIEHTLRLPPHLLRLPLNEAIKLELENVFLDKVIANLGLCISIYDIKEIEGGFVY 60
MFY +EH + L P L +K +L G I++ I I G +
Sbjct: 1 MFYHVSLEHEILLHPQYFGPNLLNTVKQKLFTEVEGTCTGKYGFVIAVTTIDNIGAGIIQ 60
Query: 61 PGEGASTHTVKFRLVVFRPFVGEIIAAKLKESDANGLRLSLGFFEDIYVPSHLLPSPSRS 120
PG G + VK++ +VFRPF GE++ A + + + GL +G ++ H +PS
Sbjct: 61 PGRGFVLYPVKYKAIVFRPFKGEVLDAVVTQVNKVGLFTEIGPLS-CFISRHSIPSEYEF 119
Query: 121 EPD 123
+P+
Sbjct: 120 DPN 122
>gi|242005679|ref|XP_002423690.1| mixed-lineage leukemia protein, mll, putative [Pediculus humanus
corporis]
gi|212506866|gb|EEB10952.1| mixed-lineage leukemia protein, mll, putative [Pediculus humanus
corporis]
Length = 3311
Score = 59.3 bits (142), Expect = 7e-07, Method: Composition-based stats.
Identities = 39/152 (25%), Positives = 68/152 (44%), Gaps = 14/152 (9%)
Query: 7 IEHTLRLPPHLLRLPLNEAIKLELENVFLDKVIANLGLCISIYDIKEIEGGFVYPGEGAS 66
+EH + L P L E +K +L G I++ I I G + PG+G
Sbjct: 5 LEHEILLHPRYFGPQLLETVKQKLYAEVEGTCTGKYGFVIAVTLIDNIGAGLILPGQGFV 64
Query: 67 THTVKFRLVVFRPFVGEIIAAKLKESDANGLRLSLG----FFEDIYVPSHLLPSPSRSEP 122
+ VK+R +VFRPF GE++ A + + + G+ +G F +P+ + P+ + P
Sbjct: 65 VYPVKYRAIVFRPFKGEVLDAVVTQVNKVGMFAEIGPLSCFISHHSIPADMQFCPNFNPP 124
Query: 123 DPYGRYEVKWIWEFGDTKYVIDGLDEIKFRVL 154
++ D VI DEI+ +++
Sbjct: 125 ----------CYKSKDEDVVIQADDEIRLKIV 146
>gi|291222602|ref|XP_002731309.1| PREDICTED: DNA directed RNA polymerase II polypeptide G-like
[Saccoglossus kowalevskii]
Length = 172
Score = 59.3 bits (142), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 51/190 (26%), Positives = 81/190 (42%), Gaps = 18/190 (9%)
Query: 1 MFYLSKIEHTLRLPPHLLRLPLNEAIKLELENVFLDKVIANLGLCISIYDIKEIEGGFVY 60
MFY +EH + L P L +K +L G I++ I I G +
Sbjct: 1 MFYHISLEHEILLHPRYFGPNLLNTVKQKLFTEVEGTCTGKYGFVIAVTTIDNIGAGRIQ 60
Query: 61 PGEGASTHTVKFRLVVFRPFVGEIIAAKLKESDANGLRLSLGFFEDIYVPSHLLPSPSRS 120
P G + VK++ +VFRPF GE++ A + + + GL +G +V H +PS
Sbjct: 61 PSRGFVLYPVKYKAIVFRPFKGEVVDAVVTQVNKVGLFTEIGPLS-CFVSRHSIPSDMEF 119
Query: 121 EPDPYGRYEVKWIWEFGDTKYVIDGLDEIKFRVLSVNYPSIPIEQAEGSKPFAPMVINGS 180
+P+ ++ D VI DEI+ +++ + + S FA GS
Sbjct: 120 DPNSN-----PPCYKTQDEDVVIQQDDEIRLKIVGT--------RVDASDIFAI----GS 162
Query: 181 IDYDGLGPVS 190
+ D LG VS
Sbjct: 163 LMDDYLGLVS 172
>gi|390960923|ref|YP_006424757.1| DNA-directed RNA polymerase subunit E' [Thermococcus sp. CL1]
gi|390519231|gb|AFL94963.1| DNA-directed RNA polymerase subunit E' [Thermococcus sp. CL1]
Length = 185
Score = 59.3 bits (142), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 45/192 (23%), Positives = 92/192 (47%), Gaps = 18/192 (9%)
Query: 1 MFYLSKIEHTLRLPPHLLRLPLNEAIKLELENVFLDKVIANLGLCISIYDIKEIEGGFVY 60
M+ L K+ +R+PP + + EA KL L + + G+ +++ D++EI G +
Sbjct: 1 MYKLLKVRDVVRIPPKMFTMDPKEAAKLVLREAYEGIYDRDEGVVLAVMDVEEIGQGVIV 60
Query: 61 PGEGASTHTVKFRLVVFRPFVGEIIAAKLKESDANGLRLSLGFFEDIYVPSHLLPSPSRS 120
PG+GA+ H V F ++V++P + E++ ++ + G + +G + + S L+
Sbjct: 61 PGDGATYHEVVFNVLVWKPEMHEVVDGEVIDVAPYGAFIRIGPMDGLVHISQLM------ 114
Query: 121 EPDPYGRYEVKWIWEFG-DTKYVIDGLDEIKFRVLSVNYPSIPIEQAEGSKPFAPMVING 179
D Y ++ K G +T ++ DE + R+++++ S I + + I
Sbjct: 115 --DDYVVFDEKNKQFIGKETNRILKLGDEARARIIAISIKSRVIRENK---------IGL 163
Query: 180 SIDYDGLGPVSW 191
++ GLG W
Sbjct: 164 TMRQPGLGKKEW 175
>gi|340059538|emb|CCC53925.1| DNA-directed RNA polymerase III subunit,putative, (fragment),
partial [Trypanosoma vivax Y486]
Length = 206
Score = 59.3 bits (142), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 37/144 (25%), Positives = 68/144 (47%), Gaps = 10/144 (6%)
Query: 5 SKIEHTLRLPPHLLRLPLNEAIKLELENVFLDKVIANLGLCISIYDIKEIEGGFVYPGEG 64
++++ L ++ L + + L ++ K++ +LGLC++I+DI G V
Sbjct: 41 AEVDQRDDLDEQCYQVTLEDTLMHRLTERYVGKIVPSLGLCVAIHDILHSTQGTVRGTSA 100
Query: 65 ASTHTVKFRLVVFRPFVGEIIAAKLKESDANGLRLSLGFFEDIYVPSHLLPSPSRSEPDP 124
++ TV+FR+ VF P G + A + + G+ LSL FF+ ++ L+P P
Sbjct: 101 SAWFTVQFRICVFAPAPGARLRATIAAQNHRGIFLSLDFFQFLF----LVPGDKLIAPST 156
Query: 125 YGRYEVKWIWEFGDTKYVIDGLDE 148
+ W+ + V DG DE
Sbjct: 157 FDEKRGCWVLQ------VDDGSDE 174
>gi|45358003|ref|NP_987560.1| DNA-directed RNA polymerase subunit E' [Methanococcus maripaludis
S2]
gi|340623628|ref|YP_004742081.1| DNA-directed RNA polymerase subunit E' [Methanococcus maripaludis
X1]
gi|44920760|emb|CAF29996.1| DNA-directed RNA polymerase subunit E' [Methanococcus maripaludis
S2]
gi|339903896|gb|AEK19338.1| DNA-directed RNA polymerase subunit E' [Methanococcus maripaludis
X1]
Length = 187
Score = 59.3 bits (142), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 47/192 (24%), Positives = 94/192 (48%), Gaps = 18/192 (9%)
Query: 1 MFYLSKIEHTLRLPPHLLRLPLNEAIKLELENVFLDKVIANLGLCISIYDIKEIEGGFVY 60
M+ + KI T+R+PP + PL+E +K L + + ++G +SI D+ + G +
Sbjct: 1 MYKILKISDTVRIPPKMFGNPLSENVKRVLMEKYEGILDKDIGFILSIVDVDNVSDGSII 60
Query: 61 PGEGASTHTVKFRLVVFRPFVGEIIAAKLKESDANGLRLSLGFFEDIYVPSHLLPSPSRS 120
G+GA+ H +F ++ + P + E++ ++ + G + LG + + S ++
Sbjct: 61 YGDGAAYHETEFNVLTYVPELQEVVDGEIVDVVEFGAFVRLGPLDGLIHISQIM------ 114
Query: 121 EPDPYGRYEVKWIWEFG-DTKYVIDGLDEIKFRVLSVNYPSIPIEQAEGSKPFAPMVING 179
D + ++ K G +T V++ D+++ R+++V S+ E+ GSK M N
Sbjct: 115 --DDFVSFDPKREAIIGKETGKVLEKGDKVRARIVAV---SLREEKKRGSKIALTMRQN- 168
Query: 180 SIDYDGLGPVSW 191
GLG + W
Sbjct: 169 -----GLGRLEW 175
>gi|72013666|ref|XP_780458.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB7-like
[Strongylocentrotus purpuratus]
gi|115911735|ref|XP_001175504.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB7-like
[Strongylocentrotus purpuratus]
Length = 172
Score = 59.3 bits (142), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 39/154 (25%), Positives = 68/154 (44%), Gaps = 6/154 (3%)
Query: 1 MFYLSKIEHTLRLPPHLLRLPLNEAIKLELENVFLDKVIANLGLCISIYDIKEIEGGFVY 60
MFY +EH + L P L +K +L G I++ I I G +
Sbjct: 1 MFYHVSLEHEILLHPRYFGPNLLNTVKQKLFTEVEGTCTGKYGFVIAVTTIDNIGAGMIQ 60
Query: 61 PGEGASTHTVKFRLVVFRPFVGEIIAAKLKESDANGLRLSLGFFEDIYVPSHLLPSPSRS 120
P G + VK++ +VFRPF GE++ A + + + GL +G ++ H +P+
Sbjct: 61 PSRGFVLYPVKYKAIVFRPFKGEVVDAVVTQVNKVGLFTDIGPLS-CFISRHSIPADMEF 119
Query: 121 EPDPYGRYEVKWIWEFGDTKYVIDGLDEIKFRVL 154
+P+ ++ D VI DEI+ +++
Sbjct: 120 DPN-----SSPPCYKTKDEDIVIQQDDEIRLKIV 148
>gi|14521883|ref|NP_127359.1| DNA-directed RNA polymerase subunit E' [Pyrococcus abyssi GE5]
gi|5459103|emb|CAB50589.1| rpoE1 DNA-directed RNA polymerase, subunit E' [Pyrococcus abyssi
GE5]
gi|380742519|tpe|CCE71153.1| TPA: DNA-directed RNA polymerase subunit E' [Pyrococcus abyssi GE5]
Length = 188
Score = 59.3 bits (142), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 45/192 (23%), Positives = 90/192 (46%), Gaps = 18/192 (9%)
Query: 1 MFYLSKIEHTLRLPPHLLRLPLNEAIKLELENVFLDKVIANLGLCISIYDIKEIEGGFVY 60
M+ + ++ +R+PP + + EA L L + K + G+ +SI ++KE+ G +
Sbjct: 1 MYKIVTVKDVVRIPPRMFTMDPKEAAMLVLRETYEGKYDKDEGVILSIVEVKEVGDGIIV 60
Query: 61 PGEGASTHTVKFRLVVFRPFVGEIIAAKLKESDANGLRLSLGFFEDIYVPSHLLPSPSRS 120
PG+GA+ H V F ++V+ P E++ + ++ G + +G + + S L+
Sbjct: 61 PGDGATYHEVVFDVLVWEPKQQEVVEGTVVDAVPFGAFVRIGPMDGLVHISQLM------ 114
Query: 121 EPDPYGRYEVKWIWEFG-DTKYVIDGLDEIKFRVLSVNYPSIPIEQAEGSKPFAPMVING 179
D Y Y+ + G + KY++ D ++ R+++V+ S I + I
Sbjct: 115 --DDYVVYDERNKQFVGKEKKYLLKIGDAVRARIITVSAKSRIIRENR---------IGL 163
Query: 180 SIDYDGLGPVSW 191
++ GLG W
Sbjct: 164 TMRQPGLGKFEW 175
>gi|213972531|ref|NP_001135427.1| DNA-directed RNA polymerase II subunit RPB7 [Ovis aries]
gi|212378988|gb|ACJ24821.1| DNA-directed RNA polymerase II polypeptide G [Ovis aries]
Length = 172
Score = 59.3 bits (142), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 41/154 (26%), Positives = 68/154 (44%), Gaps = 6/154 (3%)
Query: 1 MFYLSKIEHTLRLPPHLLRLPLNEAIKLELENVFLDKVIANLGLCISIYDIKEIEGGFVY 60
MFY +EH + L P L +K +L G I++ I I G +
Sbjct: 1 MFYHISLEHEILLHPRYFGPNLLNTVKQKLFTEVEGTCTGKYGFVIAVTTIDNIGAGVIQ 60
Query: 61 PGEGASTHTVKFRLVVFRPFVGEIIAAKLKESDANGLRLSLGFFEDIYVPSHLLPSPSRS 120
PG G + VK + +VFRPF GE++ A + + + GL +G ++ H +PS
Sbjct: 61 PGRGFVLYPVKSKAIVFRPFKGEVVDAVVTQVNKVGLFTEIGPMS-CFISRHSIPSEMEF 119
Query: 121 EPDPYGRYEVKWIWEFGDTKYVIDGLDEIKFRVL 154
+P+ ++ D VI DEI+ +++
Sbjct: 120 DPNSN-----PPCYKTMDEDIVIQQDDEIRLKIV 148
>gi|159904859|ref|YP_001548521.1| DNA-directed RNA polymerase subunit E' [Methanococcus maripaludis
C6]
gi|159886352|gb|ABX01289.1| DNA-directed RNA polymerase [Methanococcus maripaludis C6]
Length = 187
Score = 59.3 bits (142), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 47/192 (24%), Positives = 94/192 (48%), Gaps = 18/192 (9%)
Query: 1 MFYLSKIEHTLRLPPHLLRLPLNEAIKLELENVFLDKVIANLGLCISIYDIKEIEGGFVY 60
M+ + KI T+R+PP + PL+E +K L + + ++G +SI D+ + G +
Sbjct: 1 MYKILKISDTVRIPPKMFGNPLSENVKRVLMEKYEGILDKDIGFILSIVDVDNVSDGSII 60
Query: 61 PGEGASTHTVKFRLVVFRPFVGEIIAAKLKESDANGLRLSLGFFEDIYVPSHLLPSPSRS 120
G+GA+ H +F ++ + P + E++ ++ + G + LG + + S ++
Sbjct: 61 YGDGAAYHETEFNVLTYVPELQEVVDGEIVDVVEFGAFVRLGPLDGLIHISQIM------ 114
Query: 121 EPDPYGRYEVKWIWEFG-DTKYVIDGLDEIKFRVLSVNYPSIPIEQAEGSKPFAPMVING 179
D + ++ K G +T V++ D+++ R+++V S+ E+ GSK M N
Sbjct: 115 --DDFVSFDPKREAIIGKETGKVLEKGDKVRARIVAV---SLREEKKRGSKIALTMRQN- 168
Query: 180 SIDYDGLGPVSW 191
GLG + W
Sbjct: 169 -----GLGRLEW 175
>gi|15678292|ref|NP_275407.1| DNA-directed RNA polymerase subunit E' [Methanothermobacter
thermautotrophicus str. Delta H]
gi|2621314|gb|AAB84770.1| DNA-dependent RNA polymerase, subunit E' [Methanothermobacter
thermautotrophicus str. Delta H]
Length = 184
Score = 59.3 bits (142), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 33/102 (32%), Positives = 57/102 (55%)
Query: 1 MFYLSKIEHTLRLPPHLLRLPLNEAIKLELENVFLDKVIANLGLCISIYDIKEIEGGFVY 60
M+Y++KI T+R+PP PL E L ++ ++ NLG I++ +I++I G V
Sbjct: 1 MYYVTKIVDTVRIPPDRFEEPLEEVAVEVLNETYVGRMDKNLGQLITVKEIEDIGIGKVI 60
Query: 61 PGEGASTHTVKFRLVVFRPFVGEIIAAKLKESDANGLRLSLG 102
G+GA+ H V F + F+P + EI+ ++ E G + +G
Sbjct: 61 MGDGAAYHEVTFTALFFKPELHEIVEGEVIEIAEFGAFVRIG 102
>gi|357630895|gb|EHJ78714.1| putative mixed-lineage leukemia protein, mll [Danaus plexippus]
Length = 173
Score = 59.3 bits (142), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 37/139 (26%), Positives = 63/139 (45%), Gaps = 4/139 (2%)
Query: 1 MFYLSKIEHTLRLPPHLLRLPLNEAIKLELENVFLDKVIANLGLCISIYDIKEIEGGFVY 60
MFY +EH + L P L + +K +L G I++ I I G +
Sbjct: 1 MFYHISLEHEILLHPRYFGPQLLDTVKQKLYTEVEGTCTGKYGFVIAVTTIDSIGAGLIQ 60
Query: 61 PGEGASTHTVKFRLVVFRPFVGEIIAAKLKESDANGLRLSLG----FFEDIYVPSHLLPS 116
PG+G + VK++ +VFRPF GE++ A + + + G+ +G F +P+ +
Sbjct: 61 PGQGFVVYPVKYKAIVFRPFKGEVLDAIVTQVNKVGMFAQIGPLSCFISHHSIPTDMEFC 120
Query: 117 PSRSEPDPYGRYEVKWIWE 135
P+ + P + E I E
Sbjct: 121 PNVNPPCYKSKQEDNVIQE 139
>gi|327289535|ref|XP_003229480.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB7-like [Anolis
carolinensis]
Length = 202
Score = 58.9 bits (141), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 40/155 (25%), Positives = 68/155 (43%), Gaps = 6/155 (3%)
Query: 2 FYLSKIEHTLRLPPHLLRLPLNEAIKLELENVFLDKVIANLGLCISIYDIKEIEGGFVYP 61
FY +EH + L P L +K +L G I++ I I G + P
Sbjct: 32 FYYISLEHEILLHPRYFGPNLLNTVKQKLFTEVEGTCTGKYGFVIAVTTIDNIGAGVIQP 91
Query: 62 GEGASTHTVKFRLVVFRPFVGEIIAAKLKESDANGLRLSLGFFEDIYVPSHLLPSPSRSE 121
G G + VK++ +VFRPF GE++ A + + + GL +G ++ H +PS +
Sbjct: 92 GRGFVLYPVKYKAIVFRPFKGEVVDAVVTQVNKVGLFTEIGPMS-CFISRHSIPSEMEFD 150
Query: 122 PDPYGRYEVKWIWEFGDTKYVIDGLDEIKFRVLSV 156
P+ ++ D VI DEI+ +++
Sbjct: 151 PN-----SNPPCYKTIDEDVVIQQDDEIRLKIVGT 180
>gi|225709388|gb|ACO10540.1| DNA-directed RNA polymerase II subunit RPB7 [Caligus rogercresseyi]
Length = 172
Score = 58.9 bits (141), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 34/123 (27%), Positives = 59/123 (47%), Gaps = 1/123 (0%)
Query: 1 MFYLSKIEHTLRLPPHLLRLPLNEAIKLELENVFLDKVIANLGLCISIYDIKEIEGGFVY 60
MFY ++H +RL P L + +K +L G I++ I I G +
Sbjct: 1 MFYHICLDHEIRLHPRYFGPTLLDRVKQKLFTEVEGTCTGKYGFVIAVTTIDNIGAGIIQ 60
Query: 61 PGEGASTHTVKFRLVVFRPFVGEIIAAKLKESDANGLRLSLGFFEDIYVPSHLLPSPSRS 120
PG G + VK++ +VFRPF GE++ A + + + GL +G ++ H +P+
Sbjct: 61 PGNGFVIYPVKYKAIVFRPFKGEVLDAVVTQVNKVGLFTEIG-PPSCFISRHSIPADMTF 119
Query: 121 EPD 123
+P+
Sbjct: 120 DPN 122
>gi|116754621|ref|YP_843739.1| DNA-directed RNA polymerase subunit E' [Methanosaeta thermophila
PT]
gi|116666072|gb|ABK15099.1| DNA-directed RNA polymerase, subunit E' [Methanosaeta thermophila
PT]
Length = 206
Score = 58.9 bits (141), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 52/193 (26%), Positives = 95/193 (49%), Gaps = 20/193 (10%)
Query: 1 MFYLSKIEHTLRLPPHLLRLPLNEAIKLELENVFLDKVIANLGLCISIYDIKEIEGGFVY 60
M+ K+E +R+PP + PLN+A+++ L N + +V LG ++I + I G +
Sbjct: 1 MYKRMKLEGVVRIPPEDMGNPLNDAVEMALRNKYEARVDRTLGAIVAILGVDSIGEGRII 60
Query: 61 PGEGASTHTVKFRLVVFRPFVGEIIAAKLKESDANGLRLSLGFFEDIYVPSHLLPSPSRS 120
G+GA + V F VVF+P + E++ ++ E G +S+G F+ + S +
Sbjct: 61 AGDGAVYYDVIFDAVVFKPEMQEVVEGEVVEIVKFGAFVSIGPFDGLLHVSQI------- 113
Query: 121 EPDPYGRYEVK--WIWEFGDTKYVIDGLDEIKFRVLSVNYPSIPIEQAEGSKPFAPMVIN 178
D Y Y+ K + K++ +G D ++ R+++V S+ +GSK I
Sbjct: 114 -TDEYMAYDEKNARLVSKDTNKFLAEG-DRVRARIIAV---SLNERDPKGSK------IG 162
Query: 179 GSIDYDGLGPVSW 191
++ GLG + W
Sbjct: 163 LTMRQTGLGKIEW 175
>gi|229365728|gb|ACQ57844.1| DNA-directed RNA polymerase II subunit RPB7 [Anoplopoma fimbria]
Length = 172
Score = 58.9 bits (141), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 40/154 (25%), Positives = 69/154 (44%), Gaps = 6/154 (3%)
Query: 1 MFYLSKIEHTLRLPPHLLRLPLNEAIKLELENVFLDKVIANLGLCISIYDIKEIEGGFVY 60
MF+ +EH + L P L +K +L G I++ I I G +
Sbjct: 1 MFHHISLEHEILLHPRYFGPNLLNTVKQKLFTEVEGTCTGKYGFVIAVTTIDNIGAGVIQ 60
Query: 61 PGEGASTHTVKFRLVVFRPFVGEIIAAKLKESDANGLRLSLGFFEDIYVPSHLLPSPSRS 120
PG G + VK++ +VFRPF GE++ A + + + GL +G ++ H +PS
Sbjct: 61 PGRGFVLYPVKYKAIVFRPFKGEVVDAVVTQVNKVGLFTEVGPMS-CFISRHSIPSEMEF 119
Query: 121 EPDPYGRYEVKWIWEFGDTKYVIDGLDEIKFRVL 154
+P+ ++ D VI DEI+ +++
Sbjct: 120 DPNSN-----PPCYKTVDEDIVIQQDDEIRLKIV 148
>gi|304314475|ref|YP_003849622.1| DNA-directed RNA polymerase subunit E' [Methanothermobacter
marburgensis str. Marburg]
gi|302587934|gb|ADL58309.1| predicted DNA-directed RNA polymerase subunit E'
[Methanothermobacter marburgensis str. Marburg]
Length = 184
Score = 58.9 bits (141), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 33/102 (32%), Positives = 57/102 (55%)
Query: 1 MFYLSKIEHTLRLPPHLLRLPLNEAIKLELENVFLDKVIANLGLCISIYDIKEIEGGFVY 60
M+Y++KI T+R+PP PL E L ++ ++ NLG I++ +I++I G V
Sbjct: 1 MYYITKIVDTVRIPPDRFEEPLEEVAIEVLNETYVGRMDRNLGQMITVKEIEDIGIGKVI 60
Query: 61 PGEGASTHTVKFRLVVFRPFVGEIIAAKLKESDANGLRLSLG 102
G+GA+ H V F + F+P + EI+ ++ E G + +G
Sbjct: 61 MGDGAAYHEVTFTALFFKPELHEIVEGEVIEIAEFGAFVRIG 102
>gi|296084183|emb|CBI24571.3| unnamed protein product [Vitis vinifera]
Length = 112
Score = 58.5 bits (140), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 26/59 (44%), Positives = 43/59 (72%)
Query: 126 GRYEVKWIWEFGDTKYVIDGLDEIKFRVLSVNYPSIPIEQAEGSKPFAPMVINGSIDYD 184
+ +V WI + + K+ IDG+++I+F+V SV+Y +P+EQ + SKPFAPMVI+ S ++
Sbjct: 13 SKSQVIWIQDNQEQKFPIDGINKIRFQVQSVSYSPVPVEQRKESKPFAPMVISVSSSFE 71
>gi|156378584|ref|XP_001631222.1| predicted protein [Nematostella vectensis]
gi|156218258|gb|EDO39159.1| predicted protein [Nematostella vectensis]
Length = 172
Score = 58.5 bits (140), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 42/156 (26%), Positives = 68/156 (43%), Gaps = 6/156 (3%)
Query: 1 MFYLSKIEHTLRLPPHLLRLPLNEAIKLELENVFLDKVIANLGLCISIYDIKEIEGGFVY 60
MFY +EH + L P L + +K +L G I++ I I G +
Sbjct: 1 MFYHISLEHEILLHPRYFGPNLLQTVKQKLFTEVEGTCSGKYGFIIAVTTIDNIGVGHIQ 60
Query: 61 PGEGASTHTVKFRLVVFRPFVGEIIAAKLKESDANGLRLSLGFFEDIYVPSHLLPSPSRS 120
PG G + VK++ +VFRPF GE++ A + + + GL +G +V H +P
Sbjct: 61 PGRGFVVYPVKYKAIVFRPFKGEVLDAVITQVNKLGLFTEIGPLS-CFVSRHSIPPDMEF 119
Query: 121 EPDPYGRYEVKWIWEFGDTKYVIDGLDEIKFRVLSV 156
+P+ ++ D V DEI+ RV+
Sbjct: 120 DPN-----SNPPCYKTKDEDVVYQQDDEIRLRVVGT 150
>gi|383865506|ref|XP_003708214.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB7-like
[Megachile rotundata]
Length = 173
Score = 58.5 bits (140), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 32/123 (26%), Positives = 59/123 (47%), Gaps = 1/123 (0%)
Query: 1 MFYLSKIEHTLRLPPHLLRLPLNEAIKLELENVFLDKVIANLGLCISIYDIKEIEGGFVY 60
MFY +EH + L P L + +K +L G +++ I I G +
Sbjct: 1 MFYHISLEHEILLHPRYFGPQLLDTVKQKLYTEVEGTCTGKYGFVVAVTTIDNIGAGIIQ 60
Query: 61 PGEGASTHTVKFRLVVFRPFVGEIIAAKLKESDANGLRLSLGFFEDIYVPSHLLPSPSRS 120
PG+G + VK++ +VFRPF GE++ A + + + G+ +G ++ H +P+ +
Sbjct: 61 PGQGFVVYPVKYKAIVFRPFKGEVLDAIVTQVNKVGMFAEIGPLS-CFISHHSIPADMQF 119
Query: 121 EPD 123
P+
Sbjct: 120 CPN 122
>gi|340711605|ref|XP_003394365.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB7-like [Bombus
terrestris]
gi|350416078|ref|XP_003490834.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB7-like [Bombus
impatiens]
Length = 173
Score = 58.5 bits (140), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 32/123 (26%), Positives = 59/123 (47%), Gaps = 1/123 (0%)
Query: 1 MFYLSKIEHTLRLPPHLLRLPLNEAIKLELENVFLDKVIANLGLCISIYDIKEIEGGFVY 60
MFY +EH + L P L + +K +L G +++ I I G +
Sbjct: 1 MFYHISLEHEILLHPRYFGPQLLDTVKQKLYTEVEGTCTGKYGFVVAVTTIDNIGAGIIQ 60
Query: 61 PGEGASTHTVKFRLVVFRPFVGEIIAAKLKESDANGLRLSLGFFEDIYVPSHLLPSPSRS 120
PG+G + VK++ +VFRPF GE++ A + + + G+ +G ++ H +P+ +
Sbjct: 61 PGQGFVVYPVKYKAIVFRPFKGEVLDAIVTQVNKVGMFAEIGPLS-CFISHHSIPADMQF 119
Query: 121 EPD 123
P+
Sbjct: 120 CPN 122
>gi|328789158|ref|XP_624976.2| PREDICTED: DNA-directed RNA polymerase II subunit RPB7-like [Apis
mellifera]
gi|380030530|ref|XP_003698899.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB7-like [Apis
florea]
Length = 173
Score = 58.5 bits (140), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 32/123 (26%), Positives = 59/123 (47%), Gaps = 1/123 (0%)
Query: 1 MFYLSKIEHTLRLPPHLLRLPLNEAIKLELENVFLDKVIANLGLCISIYDIKEIEGGFVY 60
MFY +EH + L P L + +K +L G +++ I I G +
Sbjct: 1 MFYHISLEHEILLHPRYFGPQLLDTVKQKLYTEVEGTCTGKYGFVVAVTTIDNIGAGIIQ 60
Query: 61 PGEGASTHTVKFRLVVFRPFVGEIIAAKLKESDANGLRLSLGFFEDIYVPSHLLPSPSRS 120
PG+G + VK++ +VFRPF GE++ A + + + G+ +G ++ H +P+ +
Sbjct: 61 PGQGFVVYPVKYKAIVFRPFKGEVLDAIVTQVNKVGMFAEIGPLS-CFISHHSIPADMQF 119
Query: 121 EPD 123
P+
Sbjct: 120 CPN 122
>gi|73586691|gb|AAI03081.1| Polymerase (RNA) II (DNA directed) polypeptide G [Bos taurus]
Length = 172
Score = 58.5 bits (140), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 40/154 (25%), Positives = 68/154 (44%), Gaps = 6/154 (3%)
Query: 1 MFYLSKIEHTLRLPPHLLRLPLNEAIKLELENVFLDKVIANLGLCISIYDIKEIEGGFVY 60
MFY +EH + L P L +K +L I++ I I G +
Sbjct: 1 MFYHISLEHEILLHPRYFGPNLLNTVKQKLFTEVEGTCTGKYCFVIAVTTIDNIGAGVIQ 60
Query: 61 PGEGASTHTVKFRLVVFRPFVGEIIAAKLKESDANGLRLSLGFFEDIYVPSHLLPSPSRS 120
PG G + VK++ +VFRPF GE++ A + + + GL +G ++ H +PS
Sbjct: 61 PGRGFVLYPVKYKAIVFRPFKGEVVDAVVTQVNKVGLFTEIGPMS-CFISRHSIPSEMEF 119
Query: 121 EPDPYGRYEVKWIWEFGDTKYVIDGLDEIKFRVL 154
+P+ ++ D VI DEI+ +++
Sbjct: 120 DPNSN-----PPCYKTMDEDIVIQQDDEIRLKIV 148
>gi|440492846|gb|ELQ75379.1| DNA-directed RNA polymerase subunit E' [Trachipleistophora hominis]
Length = 175
Score = 58.5 bits (140), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 40/165 (24%), Positives = 75/165 (45%), Gaps = 27/165 (16%)
Query: 34 FLDKVIANLGLCISIYDIKEIEGGFVYPGEGASTHTVKFRLVVFRPFVGEIIAAKLKESD 93
+ +++I N G+ I + +IK+I G + EG T ++F L+ ++ F EI+ A + + D
Sbjct: 32 YTNRIIPNEGIGIRVKEIKKIYGKELV--EGCYTVHLEFILITYKLFKDEIVEATISKQD 89
Query: 94 ANGLRLSLGFFEDIYVPSHLLPSPSRS------EPDPYGRYEVKWIWEFGDTKYVIDGLD 147
NG+ L I+V + L P + P+ + + W W + + +
Sbjct: 90 ENGIYLMHPIVNTIHVKT-LFPGTEKKYFVMKDSPEKH----MCWCWTYKNDNFYFKNGQ 144
Query: 148 EIKFRVLSVNYPSIPIEQAEGSKPFAPMVINGSIDYDGLGPVSWW 192
++ +V+ V+Y P V+ +D +GLGP WW
Sbjct: 145 FVRCKVVHVSY--------------NPFVVEARMDDNGLGPKEWW 175
>gi|150403357|ref|YP_001330651.1| DNA-directed RNA polymerase subunit E' [Methanococcus maripaludis
C7]
gi|150034387|gb|ABR66500.1| DNA-directed RNA polymerase [Methanococcus maripaludis C7]
Length = 187
Score = 58.5 bits (140), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 47/192 (24%), Positives = 94/192 (48%), Gaps = 18/192 (9%)
Query: 1 MFYLSKIEHTLRLPPHLLRLPLNEAIKLELENVFLDKVIANLGLCISIYDIKEIEGGFVY 60
M+ + KI T+R+PP + PL+E +K L + + ++G +SI D+ + G +
Sbjct: 1 MYKILKISDTVRIPPKMFGNPLSENVKRVLMEKYEGILDKDVGFILSIVDVDNVSEGSII 60
Query: 61 PGEGASTHTVKFRLVVFRPFVGEIIAAKLKESDANGLRLSLGFFEDIYVPSHLLPSPSRS 120
G+GA+ H +F ++ + P + E++ ++ + G + LG + + S ++
Sbjct: 61 YGDGAAYHETEFNVLTYVPELQEVVDGEIVDVVEFGAFVRLGPLDGLIHISQIM------ 114
Query: 121 EPDPYGRYEVKWIWEFG-DTKYVIDGLDEIKFRVLSVNYPSIPIEQAEGSKPFAPMVING 179
D + ++ K G +T V++ D+++ R+++V S+ E+ GSK M N
Sbjct: 115 --DDFVSFDPKREAIIGKETGKVLEKGDKVRARIVAV---SLREEKKRGSKIALTMRQN- 168
Query: 180 SIDYDGLGPVSW 191
GLG + W
Sbjct: 169 -----GLGRLEW 175
>gi|337284806|ref|YP_004624280.1| DNA-directed RNA polymerase subunit E' [Pyrococcus yayanosii CH1]
gi|334900740|gb|AEH25008.1| DNA-directed RNA polymerase subunit E' [Pyrococcus yayanosii CH1]
Length = 188
Score = 58.2 bits (139), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 42/192 (21%), Positives = 93/192 (48%), Gaps = 18/192 (9%)
Query: 1 MFYLSKIEHTLRLPPHLLRLPLNEAIKLELENVFLDKVIANLGLCISIYDIKEIEGGFVY 60
M+ L ++ +R+PP + + EA K+ L + + G+ ++I ++KE+ G +
Sbjct: 1 MYKLVTVKDVVRIPPRMFTMDPKEAAKIVLRETYEGTYDRDDGVILAILEVKEVGDGIIV 60
Query: 61 PGEGASTHTVKFRLVVFRPFVGEIIAAKLKESDANGLRLSLGFFEDIYVPSHLLPSPSRS 120
PG+GA+ H F ++V++P + E++ + ++ G + +G + + S L+
Sbjct: 61 PGDGATYHEAVFDVLVWKPEMHEVVEGIVVDAAPFGAFIRIGPMDGLVHISQLM------ 114
Query: 121 EPDPYGRYEVKWIWEFG-DTKYVIDGLDEIKFRVLSVNYPSIPIEQAEGSKPFAPMVING 179
D Y ++ + G + KY++ DE++ R+++++ S I + + I
Sbjct: 115 --DDYVVFDERNKQFVGKEKKYLLKVGDEVRARIIAISDKSRIIRENK---------IGL 163
Query: 180 SIDYDGLGPVSW 191
++ GLG W
Sbjct: 164 TMRQPGLGKFDW 175
>gi|148642257|ref|YP_001272770.1| DNA-directed RNA polymerase subunit E' [Methanobrevibacter
smithii ATCC 35061]
gi|222444570|ref|ZP_03607085.1| hypothetical protein METSMIALI_00182 [Methanobrevibacter smithii
DSM 2375]
gi|261350890|ref|ZP_05976307.1| DNA-directed RNA polymerase [Methanobrevibacter smithii DSM 2374]
gi|148551274|gb|ABQ86402.1| DNA-dependent RNA polymerase, subunit E, RpoE [Methanobrevibacter
smithii ATCC 35061]
gi|222434135|gb|EEE41300.1| DNA-directed RNA polymerase [Methanobrevibacter smithii DSM 2375]
gi|288860228|gb|EFC92526.1| DNA-directed RNA polymerase [Methanobrevibacter smithii DSM 2374]
Length = 185
Score = 58.2 bits (139), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 31/88 (35%), Positives = 50/88 (56%)
Query: 4 LSKIEHTLRLPPHLLRLPLNEAIKLELENVFLDKVIANLGLCISIYDIKEIEGGFVYPGE 63
++KIE T+R+PP+ PL E L + + ++ LGL I + +I+EI G + G+
Sbjct: 1 MTKIEDTVRIPPYRFDDPLEEVAIQTLNDTYNGRLDKKLGLLICVNEIEEIGEGRLIMGD 60
Query: 64 GASTHTVKFRLVVFRPFVGEIIAAKLKE 91
GAS H V F + F+P E+I ++ E
Sbjct: 61 GASYHNVVFNAIFFKPEQQEVIDGEVIE 88
>gi|254581916|ref|XP_002496943.1| ZYRO0D11726p [Zygosaccharomyces rouxii]
gi|238939835|emb|CAR28010.1| ZYRO0D11726p [Zygosaccharomyces rouxii]
Length = 171
Score = 58.2 bits (139), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 31/118 (26%), Positives = 59/118 (50%), Gaps = 3/118 (2%)
Query: 1 MFYLSKIEHTLRLPPHLLRLPLNEAIKLELENVFLDKVIANLG--LCISIYDIKEIEGGF 58
MF++ + + L P + + +K +L G LC+ YD +IE G
Sbjct: 1 MFFIKDLSLNITLHPSYFGPRMKDFLKTKLLQEVEGSCTGKFGYILCVLDYDRIDIERGR 60
Query: 59 VYPGEGASTHTVKFRLVVFRPFVGEIIAAKLKESDANGLRLSLGFFEDIYVPSHLLPS 116
+ P +G++ TV++R +VF+PF GE++ + +G + +G + ++V HL+P
Sbjct: 61 ILPTDGSAEFTVRYRAIVFKPFKGEVVDGTVVSCSQHGFEVQVGPMK-VFVTKHLMPQ 117
>gi|307201488|gb|EFN81256.1| DNA-directed RNA polymerase II subunit RPB7 [Harpegnathos saltator]
Length = 179
Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 36/154 (23%), Positives = 70/154 (45%), Gaps = 6/154 (3%)
Query: 1 MFYLSKIEHTLRLPPHLLRLPLNEAIKLELENVFLDKVIANLGLCISIYDIKEIEGGFVY 60
MFY +EH + L P L + +K +L G +++ I I G +
Sbjct: 1 MFYHISLEHEILLHPRYFGPQLLDTVKQKLYTEVEGTCTGKYGFVVAVTTIDNIGAGIIQ 60
Query: 61 PGEGASTHTVKFRLVVFRPFVGEIIAAKLKESDANGLRLSLGFFEDIYVPSHLLPSPSRS 120
PG+G + VK++ +VFRPF GE++ A + + + G+ +G ++ H +P +
Sbjct: 61 PGQGFVIYPVKYKAIVFRPFKGEVLDAIVTQVNKVGMFAEIGPLS-CFISHHSIPEDMQF 119
Query: 121 EPDPYGRYEVKWIWEFGDTKYVIDGLDEIKFRVL 154
P+ ++ + +I DEI+ +++
Sbjct: 120 CPNVN-----PACYKSKEEDVIIQADDEIRLKIV 148
>gi|332796396|ref|YP_004457896.1| DNA-directed RNA polymerase RpoE [Acidianus hospitalis W1]
gi|332694131|gb|AEE93598.1| DNA-directed RNA polymerase, RpoE [Acidianus hospitalis W1]
Length = 175
Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 43/161 (26%), Positives = 81/161 (50%), Gaps = 9/161 (5%)
Query: 1 MFYLSKIEHTLRLPPHLLRLPLNEAIKLE-LENVFLDKVIANLGLCISIYDIKEIEGGFV 59
MF + K + +R+PP L++ I LE L++ + DK+ +LGL + + K E G +
Sbjct: 1 MFKIIKAKGVVRIPPEYFGEELDK-IALEILKSEYQDKIFKDLGLVLGVLSAKASEEGQI 59
Query: 60 YPGEGASTHTVKFRLVVFRPFVGEIIAAKLKESDANGLRLSLGFFEDIYVPSHLLPSPSR 119
G+GA+ H V+F L+ + P + E++ + E D G+ ++LG P L S+
Sbjct: 60 IFGDGATYHEVEFELLAYVPALQEVVEGTVAEVDNYGIYVNLG-------PMDGLVHISQ 112
Query: 120 SEPDPYGRYEVKWIWEFGDTKYVIDGLDEIKFRVLSVNYPS 160
D + + + +K V+ D ++ R+++V+ S
Sbjct: 113 IADDTFKFDSTRGVLIGEKSKKVLQKGDLVRARIVTVSAVS 153
>gi|224110118|ref|XP_002198109.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB7-like,
partial [Taeniopygia guttata]
Length = 133
Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 33/123 (26%), Positives = 57/123 (46%), Gaps = 1/123 (0%)
Query: 1 MFYLSKIEHTLRLPPHLLRLPLNEAIKLELENVFLDKVIANLGLCISIYDIKEIEGGFVY 60
MFY +EH + L P L +K +L G I++ I + G +
Sbjct: 1 MFYHISLEHEILLHPRYFGPNLLNTVKQKLFTEVEGTCTGKYGFVIAVTTIDNVGAGVIQ 60
Query: 61 PGEGASTHTVKFRLVVFRPFVGEIIAAKLKESDANGLRLSLGFFEDIYVPSHLLPSPSRS 120
PG G + V+++ +VFRPF GE++ A + + + GL +G ++ H +PS
Sbjct: 61 PGRGFVLYPVRYKAIVFRPFKGEVVDAVVTQVNKVGLFTEIGPM-SCFISRHSIPSEMEF 119
Query: 121 EPD 123
+P+
Sbjct: 120 DPN 122
>gi|159041701|ref|YP_001540953.1| DNA-directed RNA polymerase subunit E' [Caldivirga maquilingensis
IC-167]
gi|157920536|gb|ABW01963.1| DNA-directed RNA polymerase [Caldivirga maquilingensis IC-167]
Length = 211
Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 39/160 (24%), Positives = 78/160 (48%), Gaps = 5/160 (3%)
Query: 1 MFYLSKIEHTLRLPPHLLRLPLNEAIKLELENVFLDKVIANLGLCISIYDIKEIEGGFVY 60
+F + +E +R+PP + P+++ +L + + KV LG+ I+++D+K + G +
Sbjct: 17 VFRVITVEDYIRVPPSVFNEPIDKIAYEQLRSNYEGKVDRELGVFIAVFDVKVDKRGVIV 76
Query: 61 PGEGASTHTVKFRLVVFRPFVGEIIAAKLKESDANGLRLSLGFFEDIYVPSHLLPSPSRS 120
G+GA+ H V F+ +VF P + EI+ + + G + +G S ++
Sbjct: 77 YGDGATYHKVSFKALVFVPLINEIVEGDVVDVKEYGAHVRIGALTAFIHRSQVMD----E 132
Query: 121 EPDPYGRYEVKWIWEFGDTKYVIDGLDEIKFRVLSVNYPS 160
+ R ++ E K V G D ++ R++ V+Y S
Sbjct: 133 NVVLFDRQSGVFMGEKNRQKKVGRG-DVVRARIVGVSYVS 171
>gi|110590860|pdb|2B8K|G Chain G, 12-Subunit Rna Polymerase Ii
Length = 215
Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 31/117 (26%), Positives = 58/117 (49%), Gaps = 3/117 (2%)
Query: 1 MFYLSKIEHTLRLPPHLLRLPLNEAIKLELENVFLDKVIANLG--LCISIYDIKEIEGGF 58
MF++ + + L P + + +K +L G LC+ YD +I+ G
Sbjct: 1 MFFIKDLSLNITLHPSFFGPRMKQYLKTKLLEEVEGSCTGKFGYILCVLDYDNIDIQRGR 60
Query: 59 VYPGEGASTHTVKFRLVVFRPFVGEIIAAKLKESDANGLRLSLGFFEDIYVPSHLLP 115
+ P +G++ VK+R VVF+PF GE++ + +G + +G + ++V HL+P
Sbjct: 61 ILPTDGSAEFNVKYRAVVFKPFKGEVVDGTVVSCSQHGFEVQVGPMK-VFVTKHLMP 116
>gi|390939143|ref|YP_006402881.1| DNA-directed RNA polymerase [Desulfurococcus fermentans DSM 16532]
gi|390192250|gb|AFL67306.1| DNA-directed RNA polymerase [Desulfurococcus fermentans DSM 16532]
Length = 190
Score = 57.4 bits (137), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 30/113 (26%), Positives = 59/113 (52%), Gaps = 8/113 (7%)
Query: 1 MFYLSKIEHTLRLPPHLLRLPLNEAIKLELENVFLDKVIA--------NLGLCISIYDIK 52
M+ L +++ +R+PP P+ + EL + + + + LG+ ++I D+K
Sbjct: 1 MYSLIRVKDVIRIPPAKFGRPVKDVALEELRSKYEGTIASIESKGGEHKLGIIVTIIDVK 60
Query: 53 EIEGGFVYPGEGASTHTVKFRLVVFRPFVGEIIAAKLKESDANGLRLSLGFFE 105
E G + PG+GA+ H V+ +VF PF+ E++ + +G+ L+LG +
Sbjct: 61 VDENGRILPGDGATYHDVEMSALVFSPFIKEVVEGEAVTVAKSGIYLNLGVLD 113
>gi|398366567|ref|NP_010692.3| Rpb7p [Saccharomyces cerevisiae S288c]
gi|464672|sp|P34087.1|RPB7_YEAST RecName: Full=DNA-directed RNA polymerase II subunit RPB7;
Short=RNA polymerase II subunit B7; AltName: Full=B16
gi|30749743|pdb|1NT9|G Chain G, Complete 12-Subunit Rna Polymerase Ii
gi|34810559|pdb|1PQV|G Chain G, Rna Polymerase Ii-Tfiis Complex
gi|58177170|pdb|1WCM|G Chain G, Complete 12-Subunit Rna Polymerase Ii At 3.8 Ang
gi|61679450|pdb|1Y1W|G Chain G, Complete Rna Polymerase Ii Elongation Complex
gi|61679467|pdb|1Y77|G Chain G, Complete Rna Polymerase Ii Elongation Complex With
Substrate Analogue Gmpcpp
gi|61679508|pdb|1Y1V|G Chain G, Refined Rna Polymerase Ii-tfiis Complex
gi|61679521|pdb|1Y1Y|G Chain G, Rna Polymerase Ii-Tfiis-DnaRNA COMPLEX
gi|61679566|pdb|1Y14|B Chain B, Crystal Structure Of Yeast Subcomplex Of Rpb4 And Rpb7
gi|61679568|pdb|1Y14|D Chain D, Crystal Structure Of Yeast Subcomplex Of Rpb4 And Rpb7
gi|83754249|pdb|2B63|G Chain G, Complete Rna Polymerase Ii-Rna Inhibitor Complex
gi|134104680|pdb|2JA5|G Chain G, Cpd Lesion Containing Rna Polymerase Ii Elongation Complex
A
gi|134104695|pdb|2JA6|G Chain G, Cpd Lesion Containing Rna Polymerase Ii Elongation Complex
B
gi|134104716|pdb|2JA7|G Chain G, Cpd Lesion Containing Rna Polymerase Ii Elongation Complex
C
gi|134104728|pdb|2JA7|S Chain S, Cpd Lesion Containing Rna Polymerase Ii Elongation Complex
C
gi|134104740|pdb|2JA8|G Chain G, Cpd Lesion Containing Rna Polymerase Ii Elongation Complex
D
gi|160877779|pdb|2R7Z|G Chain G, Cisplatin Lesion Containing Rna Polymerase Ii Elongation
Complex
gi|161172233|pdb|2R92|G Chain G, Elongation Complex Of Rna Polymerase Ii With Artificial
Rdrp Scaffold
gi|161172246|pdb|2R93|G Chain G, Elongation Complex Of Rna Polymerase Ii With A Hepatitis
Delta Virus-Derived Rna Stem Loop
gi|190613468|pdb|2VUM|G Chain G, Alpha-Amanitin Inhibited Complete Rna Polymerase Ii
Elongation Complex
gi|224983596|pdb|3FKI|G Chain G, 12-Subunit Rna Polymerase Ii Refined With Zn-Sad Data
gi|240104517|pdb|3H3V|H Chain H, Yeast Rnap Ii Containing Poly(A)-Signal Sequence In The
Active Site
gi|254839447|pdb|3HOU|G Chain G, Complete Rna Polymerase Ii Elongation Complex I With A T-U
Mismatch
gi|254839462|pdb|3HOU|S Chain S, Complete Rna Polymerase Ii Elongation Complex I With A T-U
Mismatch
gi|254839477|pdb|3HOV|G Chain G, Complete Rna Polymerase Ii Elongation Complex Ii
gi|254839492|pdb|3HOW|G Chain G, Complete Rna Polymerase Ii Elongation Complex Iii With A
T-U Mismatch And A Frayed Rna 3'-Uridine
gi|254839507|pdb|3HOX|G Chain G, Complete Rna Polymerase Ii Elongation Complex V
gi|254839522|pdb|3HOY|G Chain G, Complete Rna Polymerase Ii Elongation Complex Vi
gi|254839537|pdb|3HOZ|G Chain G, Complete Rna Polymerase Ii Elongation Complex Iv With A
T-U Mismatch And A Frayed Rna 3'-Guanine
gi|257471952|pdb|3I4M|G Chain G, 8-oxoguanine Containing Rna Polymerase Ii Elongation
Complex D
gi|257471967|pdb|3I4N|G Chain G, 8-oxoguanine Containing Rna Polymerase Ii Elongation
Complex E
gi|266618771|pdb|3K1F|G Chain G, Crystal Structure Of Rna Polymerase Ii In Complex With
Tfiib
gi|325053969|pdb|3PO2|G Chain G, Arrested Rna Polymerase Ii Elongation Complex
gi|325053984|pdb|3PO3|G Chain G, Arrested Rna Polymerase Ii Reactivation Intermediate
gi|326634544|pdb|3QT1|G Chain G, Rna Polymerase Ii Variant Containing A Chimeric Rpb9-C11
Subunit
gi|353251639|pdb|3J0K|G Chain G, Orientation Of Rna Polymerase Ii Within The Human
Vp16-Mediator-Pol Ii-Tfiif Assembly
gi|357380842|pdb|4A3C|G Chain G, Rna Polymerase Ii Initial Transcribing Complex With A 5nt
Dna-Rna Hybrid
gi|359546296|pdb|4A3B|G Chain G, Rna Polymerase Ii Initial Transcribing Complex With A 4nt
Dna-Rna Hybrid
gi|359546314|pdb|4A3D|G Chain G, Rna Polymerase Ii Initial Transcribing Complex With A 6nt
Dna-Rna Hybrid
gi|359546331|pdb|4A3E|G Chain G, Rna Polymerase Ii Initial Transcribing Complex With A 5nt
Dna-Rna Hybrid And Soaked With Ampcpp
gi|359546348|pdb|4A3F|G Chain G, Rna Polymerase Ii Initial Transcribing Complex With A 6nt
Dna-Rna Hybrid And Soaked With Ampcpp
gi|359546365|pdb|4A3J|G Chain G, Rna Polymerase Ii Initial Transcribing Complex With A 2nt
Dna-Rna Hybrid And Soaked With Gmpcpp
gi|359546382|pdb|4A3K|G Chain G, Rna Polymerase Ii Initial Transcribing Complex With A 7nt
Dna-Rna Hybrid
gi|359546398|pdb|4A3L|G Chain G, Rna Polymerase Ii Initial Transcribing Complex With A 7nt
Dna-Rna Hybrid And Soaked With Ampcpp
gi|359546415|pdb|4A3M|G Chain G, Rna Polymerase Ii Initial Transcribing Complex With A 4nt
Dna-Rna Hybrid And Soaked With Ampcpp
gi|374977885|pdb|4A3G|G Chain G, Rna Polymerase Ii Initial Transcribing Complex With A 2nt
Dna-Rna Hybrid
gi|374977900|pdb|4A3I|G Chain G, Rna Polymerase Ii Binary Complex With Dna
gi|380764985|pdb|4A93|G Chain G, Rna Polymerase Ii Elongation Complex Containing A Cpd
Lesion
gi|414145452|pdb|4BBR|G Chain G, Structure Of Rna Polymerase Ii-tfiib Complex
gi|414145465|pdb|4BBS|G Chain G, Structure Of An Initially Transcribing Rna Polymerase Ii-
Tfiib Complex
gi|300239|gb|AAC60558.1| RNA polymerase II subunit RPB7 [Saccharomyces cerevisiae]
gi|927335|gb|AAB64844.1| Rpb7p: RNA polymerase II subunit [Saccharomyces cerevisiae]
gi|151942377|gb|EDN60733.1| RNA polymerase B [Saccharomyces cerevisiae YJM789]
gi|190404660|gb|EDV07927.1| RNA polymerase II dissociable subunit [Saccharomyces cerevisiae
RM11-1a]
gi|256271208|gb|EEU06290.1| Rpb7p [Saccharomyces cerevisiae JAY291]
gi|259145642|emb|CAY78906.1| Rpb7p [Saccharomyces cerevisiae EC1118]
gi|285811422|tpg|DAA12246.1| TPA: Rpb7p [Saccharomyces cerevisiae S288c]
gi|323305480|gb|EGA59224.1| Rpb7p [Saccharomyces cerevisiae FostersB]
gi|323334047|gb|EGA75432.1| Rpb7p [Saccharomyces cerevisiae AWRI796]
gi|323349147|gb|EGA83378.1| Rpb7p [Saccharomyces cerevisiae Lalvin QA23]
gi|323355561|gb|EGA87382.1| Rpb7p [Saccharomyces cerevisiae VL3]
gi|349577455|dbj|GAA22624.1| K7_Rpb7p [Saccharomyces cerevisiae Kyokai no. 7]
gi|365766199|gb|EHN07698.1| Rpb7p [Saccharomyces cerevisiae x Saccharomyces kudriavzevii VIN7]
Length = 171
Score = 57.4 bits (137), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 31/118 (26%), Positives = 58/118 (49%), Gaps = 3/118 (2%)
Query: 1 MFYLSKIEHTLRLPPHLLRLPLNEAIKLELENVFLDKVIANLG--LCISIYDIKEIEGGF 58
MF++ + + L P + + +K +L G LC+ YD +I+ G
Sbjct: 1 MFFIKDLSLNITLHPSFFGPRMKQYLKTKLLEEVEGSCTGKFGYILCVLDYDNIDIQRGR 60
Query: 59 VYPGEGASTHTVKFRLVVFRPFVGEIIAAKLKESDANGLRLSLGFFEDIYVPSHLLPS 116
+ P +G++ VK+R VVF+PF GE++ + +G + +G + ++V HL+P
Sbjct: 61 ILPTDGSAEFNVKYRAVVFKPFKGEVVDGTVVSCSQHGFEVQVGPMK-VFVTKHLMPQ 117
>gi|296081218|emb|CBI18244.3| unnamed protein product [Vitis vinifera]
Length = 95
Score = 57.4 bits (137), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 27/52 (51%), Positives = 39/52 (75%)
Query: 127 RYEVKWIWEFGDTKYVIDGLDEIKFRVLSVNYPSIPIEQAEGSKPFAPMVIN 178
R +V WI + + K+ IDG+D+I+F+V SV+Y +PIEQ + SKPFA MVI+
Sbjct: 21 RSQVIWIPDNQEQKFPIDGIDKIRFQVQSVSYSPVPIEQRKESKPFASMVIS 72
>gi|391343700|ref|XP_003746144.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB7-like
[Metaseiulus occidentalis]
Length = 174
Score = 57.4 bits (137), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 33/123 (26%), Positives = 57/123 (46%), Gaps = 1/123 (0%)
Query: 1 MFYLSKIEHTLRLPPHLLRLPLNEAIKLELENVFLDKVIANLGLCISIYDIKEIEGGFVY 60
MFY +EH + L P L E +K +L G I++ I I G +
Sbjct: 1 MFYHISLEHEILLHPRYFGPQLMETVKQKLFTEVEGTCTGKYGFVIAVTAIDSIGDGLIQ 60
Query: 61 PGEGASTHTVKFRLVVFRPFVGEIIAAKLKESDANGLRLSLGFFEDIYVPSHLLPSPSRS 120
P G + VK++ +VFRPF GE++ A + + + G+ +G ++ H +P +
Sbjct: 61 PNRGFVVYPVKYKAIVFRPFKGEVLDAVVTQVNKVGIFTEIGPLS-CFISRHSIPPDMQF 119
Query: 121 EPD 123
+P+
Sbjct: 120 DPN 122
>gi|312378597|gb|EFR25129.1| hypothetical protein AND_09806 [Anopheles darlingi]
Length = 983
Score = 57.4 bits (137), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 33/120 (27%), Positives = 59/120 (49%), Gaps = 1/120 (0%)
Query: 4 LSKIEHTLRLPPHLLRLPLNEAIKLELENVFLDKVIANLGLCISIYDIKEIEGGFVYPGE 63
L +EH + L P L E +K +L G I++ I +I G + PG+
Sbjct: 814 LISLEHEILLHPRYFGPQLIETVKQKLYTEVEGTCTGKYGFVIAVTTIDDIGSGTIQPGQ 873
Query: 64 GASTHTVKFRLVVFRPFVGEIIAAKLKESDANGLRLSLGFFEDIYVPSHLLPSPSRSEPD 123
G + VK++ +VFRPF GE++ A +K+ + G+ +G ++ H +P+ + P+
Sbjct: 874 GFVVYPVKYKAIVFRPFKGEVLDATVKQVNKVGMFAEIGPL-SCFISHHSIPADMQFCPN 932
>gi|367005626|ref|XP_003687545.1| hypothetical protein TPHA_0J02900 [Tetrapisispora phaffii CBS 4417]
gi|357525849|emb|CCE65111.1| hypothetical protein TPHA_0J02900 [Tetrapisispora phaffii CBS 4417]
Length = 171
Score = 57.0 bits (136), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 33/118 (27%), Positives = 57/118 (48%), Gaps = 3/118 (2%)
Query: 1 MFYLSKIEHTLRLPPHLLRLPLNEAIKLELENVFLDKVIANLG--LCISIYDIKEIEGGF 58
MF++ + + L P + + +K +L G LC+ YD EIE G
Sbjct: 1 MFFIKDLSLNIILHPSFFGPRMKQYLKTKLLQEVEGSCTGKFGYILCVLDYDKIEIERGR 60
Query: 59 VYPGEGASTHTVKFRLVVFRPFVGEIIAAKLKESDANGLRLSLGFFEDIYVPSHLLPS 116
+ +G++ TVK+R VVF+PF GE++ + +G +G + ++V HL+P
Sbjct: 61 ILATDGSAEFTVKYRAVVFKPFKGEVVDGTVVSCSQHGFEAQVGPMK-VFVTKHLMPQ 117
>gi|401838577|gb|EJT42119.1| RPB7-like protein [Saccharomyces kudriavzevii IFO 1802]
Length = 171
Score = 57.0 bits (136), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 31/118 (26%), Positives = 58/118 (49%), Gaps = 3/118 (2%)
Query: 1 MFYLSKIEHTLRLPPHLLRLPLNEAIKLELENVFLDKVIANLG--LCISIYDIKEIEGGF 58
MF++ + + L P + + +K +L G LC+ YD +I+ G
Sbjct: 1 MFFIKDLSLNITLHPSFFGPRMKQYLKAKLLEEVEGSCTGKFGYILCVLDYDNIDIQRGR 60
Query: 59 VYPGEGASTHTVKFRLVVFRPFVGEIIAAKLKESDANGLRLSLGFFEDIYVPSHLLPS 116
+ P +G++ VK+R VVF+PF GE++ + +G + +G + ++V HL+P
Sbjct: 61 ILPTDGSAEFNVKYRAVVFKPFKGEVVDGTVVSCSQHGFEVQVGPMK-VFVTKHLMPQ 117
>gi|367008802|ref|XP_003678902.1| hypothetical protein TDEL_0A03590 [Torulaspora delbrueckii]
gi|359746559|emb|CCE89691.1| hypothetical protein TDEL_0A03590 [Torulaspora delbrueckii]
Length = 171
Score = 57.0 bits (136), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 31/118 (26%), Positives = 58/118 (49%), Gaps = 3/118 (2%)
Query: 1 MFYLSKIEHTLRLPPHLLRLPLNEAIKLELENVFLDKVIANLG--LCISIYDIKEIEGGF 58
MF++ + + L P + + +K +L G LC+ YD +IE G
Sbjct: 1 MFFIKDLSLNITLHPSFFGPHMKDYLKTKLLQEVEGSCTGKFGYILCVLDYDKIDIERGR 60
Query: 59 VYPGEGASTHTVKFRLVVFRPFVGEIIAAKLKESDANGLRLSLGFFEDIYVPSHLLPS 116
+ P +G++ V++R VVF+PF GE++ + +G + +G + ++V HL+P
Sbjct: 61 ILPTDGSADFIVRYRAVVFKPFRGEVVDGTVVSCSQHGFEVQVGPMK-VFVTKHLMPQ 117
>gi|401624138|gb|EJS42207.1| rpb7p [Saccharomyces arboricola H-6]
Length = 171
Score = 57.0 bits (136), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 31/118 (26%), Positives = 58/118 (49%), Gaps = 3/118 (2%)
Query: 1 MFYLSKIEHTLRLPPHLLRLPLNEAIKLELENVFLDKVIANLG--LCISIYDIKEIEGGF 58
MF++ + + L P + + +K +L G LC+ YD +I+ G
Sbjct: 1 MFFIKDLSLNITLHPSFFGPRMKQYLKAKLLEEVEGSCTGKFGYILCVLDYDNIDIQRGR 60
Query: 59 VYPGEGASTHTVKFRLVVFRPFVGEIIAAKLKESDANGLRLSLGFFEDIYVPSHLLPS 116
+ P +G++ VK+R VVF+PF GE++ + +G + +G + ++V HL+P
Sbjct: 61 ILPTDGSAEFNVKYRAVVFKPFKGEVVDGTVVSCSQHGFEVQVGPMK-VFVTKHLMPQ 117
>gi|218884656|ref|YP_002429038.1| DNA-directed RNA polymerase subunit E' [Desulfurococcus
kamchatkensis 1221n]
gi|218766272|gb|ACL11671.1| DNA-directed RNA polymerase subunit E' [Desulfurococcus
kamchatkensis 1221n]
Length = 190
Score = 57.0 bits (136), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 30/113 (26%), Positives = 58/113 (51%), Gaps = 8/113 (7%)
Query: 1 MFYLSKIEHTLRLPPHLLRLPLNEAIKLELENVFLDKVIA--------NLGLCISIYDIK 52
M+ L ++ +R+PP P+ + EL + + + + LG+ ++I D+K
Sbjct: 1 MYSLIRVNDVIRIPPAKFGRPVKDVALEELRSKYEGTIASIESKGGEHKLGIIVTIIDVK 60
Query: 53 EIEGGFVYPGEGASTHTVKFRLVVFRPFVGEIIAAKLKESDANGLRLSLGFFE 105
E G + PG+GA+ H V+ +VF PF+ E++ + +G+ L+LG +
Sbjct: 61 VDENGRILPGDGATYHDVEMSALVFSPFIKEVVEGEAVTVAKSGIYLNLGVLD 113
>gi|387018224|gb|AFJ51230.1| DNA-directed RNA polymerase II subunit RPB7-like [Crotalus
adamanteus]
Length = 172
Score = 57.0 bits (136), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 34/116 (29%), Positives = 54/116 (46%), Gaps = 1/116 (0%)
Query: 1 MFYLSKIEHTLRLPPHLLRLPLNEAIKLELENVFLDKVIANLGLCISIYDIKEIEGGFVY 60
MFY +EH + L P L +K +L G I++ I I G +
Sbjct: 1 MFYHISLEHEILLHPRYFGPNLLNTVKQKLFTEVEGTCTGKYGFVIAVTTIDNIGAGVIQ 60
Query: 61 PGEGASTHTVKFRLVVFRPFVGEIIAAKLKESDANGLRLSLGFFEDIYVPSHLLPS 116
PG G + VK++ +VFRPF GE++ A + + + GL +G ++ H +PS
Sbjct: 61 PGRGFVLYPVKYKAIVFRPFKGEVVDAIVTQVNKVGLFTEIGPMS-CFISRHSIPS 115
>gi|386002591|ref|YP_005920890.1| DNA-directed RNA polymerase subunit E' [Methanosaeta harundinacea
6Ac]
gi|357210647|gb|AET65267.1| DNA-directed RNA polymerase, subunit E' [Methanosaeta harundinacea
6Ac]
Length = 190
Score = 57.0 bits (136), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 31/113 (27%), Positives = 60/113 (53%)
Query: 1 MFYLSKIEHTLRLPPHLLRLPLNEAIKLELENVFLDKVIANLGLCISIYDIKEIEGGFVY 60
M+ K+E +R+PP + PL EA+++ L N + +V LG +++ + +I G +
Sbjct: 1 MYKKMKLEGIVRIPPGQMGDPLEEAVEMALRNKYEARVDKTLGTVVAVLGVDDIGEGRIL 60
Query: 61 PGEGASTHTVKFRLVVFRPFVGEIIAAKLKESDANGLRLSLGFFEDIYVPSHL 113
G+GA + F +VF+P + EI+ ++ E G + +G F+ + S +
Sbjct: 61 AGDGAVYYDANFDAIVFKPEMQEIVEGEVVEIVKFGAFIGIGPFDGLLHVSQI 113
>gi|313230246|emb|CBY07950.1| unnamed protein product [Oikopleura dioica]
Length = 172
Score = 57.0 bits (136), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 38/156 (24%), Positives = 67/156 (42%), Gaps = 6/156 (3%)
Query: 1 MFYLSKIEHTLRLPPHLLRLPLNEAIKLELENVFLDKVIANLGLCISIYDIKEIEGGFVY 60
MFY +EH L + P L + I+ +L + G I + +I I G +
Sbjct: 1 MFYHINLEHELLIHPMYFGENLTDTIRQKLYSEVEGSCTGEHGFVIGVTNIHSIGDGDIL 60
Query: 61 PGEGASTHTVKFRLVVFRPFVGEIIAAKLKESDANGLRLSLGFFEDIYVPSHLLPSPSRS 120
G G +K+ +VFRPF GE++ + + + GL + +G ++ H +PS
Sbjct: 61 AGRGFCLFPIKYAAIVFRPFKGEVVDGVVTQVNKVGLMVDVGPMA-CFISKHSIPSDMEF 119
Query: 121 EPDPYGRYEVKWIWEFGDTKYVIDGLDEIKFRVLSV 156
+PD ++ D I DEI+ +++
Sbjct: 120 DPDSN-----PPCYKTKDEDTAIKQDDEIRLKIVGT 150
>gi|38567178|emb|CAE76471.1| probable DNA-directed RNA polymerase II chain Rpb7 [Neurospora
crassa]
Length = 167
Score = 57.0 bits (136), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 37/123 (30%), Positives = 62/123 (50%), Gaps = 2/123 (1%)
Query: 1 MFYLSKIEHTLRLPPHLLRLPLNEAIKLELENVFLDKVIANLGLCISIYDIKEIEGGFVY 60
MF+L +E + L P ++E + +L ++ A I+I D ++ G +
Sbjct: 1 MFFLHNLERRVTLHPSYFGRNMHELVTTKLVKD-VEGTCAGDYYIIAIMDAFDVSEGRIL 59
Query: 61 PGEGASTHTVKFRLVVFRPFVGEIIAAKLKESDANGLRLSLGFFEDIYVPSHLLPSPSRS 120
PG G + TVK+R VV+RPF GE++ A + + +G G I+V SHL+P
Sbjct: 60 PGNGLAEFTVKYRAVVWRPFKGEVVDAIVFSINPHGFFCQAGPLS-IFVSSHLMPEEIHF 118
Query: 121 EPD 123
+P+
Sbjct: 119 DPN 121
>gi|325958359|ref|YP_004289825.1| DNA-directed RNA polymerase [Methanobacterium sp. AL-21]
gi|325329791|gb|ADZ08853.1| DNA-directed RNA polymerase [Methanobacterium sp. AL-21]
Length = 195
Score = 57.0 bits (136), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 32/102 (31%), Positives = 57/102 (55%)
Query: 1 MFYLSKIEHTLRLPPHLLRLPLNEAIKLELENVFLDKVIANLGLCISIYDIKEIEGGFVY 60
M+ +SKIE T+R+PP+ PL + L ++ + LGL +++ +I+E+ G V
Sbjct: 1 MYLISKIEDTVRIPPNRFEDPLEDVAVEILNESYVGTIDKKLGLMVTVKEIEELGIGKVI 60
Query: 61 PGEGASTHTVKFRLVVFRPFVGEIIAAKLKESDANGLRLSLG 102
G+GA+ H V F + F+P + EI+ ++ E G + +G
Sbjct: 61 MGDGAAYHDVVFNALFFKPELHEIVEGEVIEITEFGAFIRIG 102
>gi|402585420|gb|EJW79360.1| DNA-directed RNA polymerase II subunit RPB7 [Wuchereria bancrofti]
Length = 107
Score = 57.0 bits (136), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 30/102 (29%), Positives = 50/102 (49%)
Query: 1 MFYLSKIEHTLRLPPHLLRLPLNEAIKLELENVFLDKVIANLGLCISIYDIKEIEGGFVY 60
MFY ++H + L P L E +K +L N G +++ I I G +
Sbjct: 1 MFYHIPLDHEICLHPKYFGPDLLETVKRKLFNEVEGTCTGKYGFVVAVTTIDNIGAGLIQ 60
Query: 61 PGEGASTHTVKFRLVVFRPFVGEIIAAKLKESDANGLRLSLG 102
PG G + VK++ +VFRPF G+++ A + + + GL +G
Sbjct: 61 PGRGFVLYPVKYKAIVFRPFKGQVVDAVVNQVNKVGLFCDIG 102
>gi|90081264|dbj|BAE90112.1| unnamed protein product [Macaca fascicularis]
Length = 221
Score = 57.0 bits (136), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 38/150 (25%), Positives = 66/150 (44%), Gaps = 6/150 (4%)
Query: 7 IEHTLRLPPHLLRLPLNEAIKLELENVFLDKVIANLGLCISIYDIKEIEGGFVYPGEGAS 66
+EH + L P L +K +L G I++ I I G + PG G
Sbjct: 56 LEHEILLHPRYFGPNLLNTVKQKLFTEVEGTCTGKYGFVIAVTTIDNIGAGVIQPGRGFV 115
Query: 67 THTVKFRLVVFRPFVGEIIAAKLKESDANGLRLSLGFFEDIYVPSHLLPSPSRSEPDPYG 126
+ VK++ +VFRPF GE++ A + + + GL +G ++ H +PS +P+
Sbjct: 116 LYPVKYKAIVFRPFKGEVVDAVVTQVNKVGLFTEIGPMS-CFISRHSIPSEMEFDPNSN- 173
Query: 127 RYEVKWIWEFGDTKYVIDGLDEIKFRVLSV 156
++ D VI DEI+ +++
Sbjct: 174 ----PPCYKTMDEDIVIQQDDEIRLKIVGT 199
>gi|336272519|ref|XP_003351016.1| hypothetical protein SMAC_04320 [Sordaria macrospora k-hell]
gi|336464760|gb|EGO53000.1| hypothetical protein NEUTE1DRAFT_150414 [Neurospora tetrasperma
FGSC 2508]
gi|350296863|gb|EGZ77840.1| putative DNA-directed RNA polymerase II chain Rpb7 [Neurospora
tetrasperma FGSC 2509]
gi|380090783|emb|CCC04953.1| unnamed protein product [Sordaria macrospora k-hell]
Length = 171
Score = 56.6 bits (135), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 37/123 (30%), Positives = 62/123 (50%), Gaps = 2/123 (1%)
Query: 1 MFYLSKIEHTLRLPPHLLRLPLNEAIKLELENVFLDKVIANLGLCISIYDIKEIEGGFVY 60
MF+L +E + L P ++E + +L ++ A I+I D ++ G +
Sbjct: 1 MFFLHNLERRVTLHPSYFGRNMHELVTTKLVKD-VEGTCAGDYYIIAIMDAFDVSEGRIL 59
Query: 61 PGEGASTHTVKFRLVVFRPFVGEIIAAKLKESDANGLRLSLGFFEDIYVPSHLLPSPSRS 120
PG G + TVK+R VV+RPF GE++ A + + +G G I+V SHL+P
Sbjct: 60 PGNGLAEFTVKYRAVVWRPFKGEVVDAIVFSINPHGFFCQAGPLS-IFVSSHLMPEEIHF 118
Query: 121 EPD 123
+P+
Sbjct: 119 DPN 121
>gi|150400166|ref|YP_001323933.1| DNA-directed RNA polymerase subunit E' [Methanococcus vannielii SB]
gi|150012869|gb|ABR55321.1| DNA-directed RNA polymerase [Methanococcus vannielii SB]
Length = 188
Score = 56.6 bits (135), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 46/192 (23%), Positives = 94/192 (48%), Gaps = 18/192 (9%)
Query: 1 MFYLSKIEHTLRLPPHLLRLPLNEAIKLELENVFLDKVIANLGLCISIYDIKEIEGGFVY 60
M+ + I T+R+PP + PLN+ +K L + + + ++G +SI DI ++ G +
Sbjct: 1 MYKILTISDTVRVPPKMFGTPLNDNVKRVLMDKYEGILDKDVGYVLSIVDINQVSDGSII 60
Query: 61 PGEGASTHTVKFRLVVFRPFVGEIIAAKLKESDANGLRLSLGFFEDIYVPSHLLPSPSRS 120
G+GA+ H KF ++ + P + E++ ++ + G + LG + + S ++
Sbjct: 61 YGDGAAYHETKFDVLTYVPELHEVVEGEIVDVVEFGAFIRLGPLDGLIHISQIM------ 114
Query: 121 EPDPYGRYEVKWIWEFG-DTKYVIDGLDEIKFRVLSVNYPSIPIEQAEGSKPFAPMVING 179
D + ++ K G +T V++ D ++ R+++V S+ E+ GSK I
Sbjct: 115 --DDFVSFDPKREAIIGKETGKVLEKGDFVRARIVAV---SLKEEKKRGSK------IAL 163
Query: 180 SIDYDGLGPVSW 191
++ LG + W
Sbjct: 164 TMRQQSLGKLEW 175
>gi|346978388|gb|EGY21840.1| DNA-directed RNA polymerase III subunit 22.9 kDa polypeptide
[Verticillium dahliae VdLs.17]
Length = 174
Score = 56.6 bits (135), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 49/197 (24%), Positives = 79/197 (40%), Gaps = 40/197 (20%)
Query: 1 MFYLSKIEHTLRLPPHLLRLPLNEAIKLELENVFLDKVIANLGLCISIYDIKEIEGGFVY 60
MF L+KI +++ P + AI+ + + ++VI +GLCI +YD+ G +
Sbjct: 1 MFILTKIADLVQIAPDDFKKRSIVAIEDNINAKYANRVIQKIGLCICLYDLLWTSEGLIG 60
Query: 61 PGEGASTHTVKFRLVVFRPFVGEIIAAKLKESDANGLRLSLGFFEDIYVPSHLLPSPSRS 120
G G V+ FF+DI+VP LP +
Sbjct: 61 HGTGLVNVNVR-----------------------------TDFFDDIFVPFEDLPEGAE- 90
Query: 121 EPDPYGRYEVKWIWEFGD-TKYVIDGLDEIKFRVLSVNY----PSIPIEQAEGSKPFAPM 175
+ + WIW + T+ D + ++F+V+ + P P + E P P
Sbjct: 91 ----FNHRDQIWIWNCDEETQLFYDIHEMVRFQVIDEEWHDQAPLGPSQSEEEVLP-TPY 145
Query: 176 VINGSIDYDGLGPVSWW 192
I GS+ DGLG WW
Sbjct: 146 KIKGSMAMDGLGVCLWW 162
>gi|18976628|ref|NP_577985.1| DNA-directed RNA polymerase subunit E' [Pyrococcus furiosus DSM
3638]
gi|397650754|ref|YP_006491335.1| DNA-directed RNA polymerase subunit E' [Pyrococcus furiosus COM1]
gi|18892197|gb|AAL80380.1| DNA-directed RNA polymerase, subunit e' [Pyrococcus furiosus DSM
3638]
gi|393188345|gb|AFN03043.1| DNA-directed RNA polymerase subunit E' [Pyrococcus furiosus COM1]
Length = 189
Score = 56.6 bits (135), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 43/192 (22%), Positives = 91/192 (47%), Gaps = 18/192 (9%)
Query: 1 MFYLSKIEHTLRLPPHLLRLPLNEAIKLELENVFLDKVIANLGLCISIYDIKEIEGGFVY 60
M+ + ++ +R+PP + + EA K+ L + + G+ +SI ++K+I+ G +
Sbjct: 1 MYKIVTVKDVVRIPPTMFTMDPKEAAKIILRETYEGTYDKDEGVILSILEVKDIKDGIII 60
Query: 61 PGEGASTHTVKFRLVVFRPFVGEIIAAKLKESDANGLRLSLGFFEDIYVPSHLLPSPSRS 120
PG+GA+ H V F ++V+ P + E++ + + G + +G + + S L+
Sbjct: 61 PGDGATYHEVVFDVLVWEPKIHEVVEGYVADVMPFGAFIRIGPIDGLVHISQLM------ 114
Query: 121 EPDPYGRYEVKWIWEFG-DTKYVIDGLDEIKFRVLSVNYPSIPIEQAEGSKPFAPMVING 179
D Y Y+ + G + KY++ D ++ R+++++ S I + I
Sbjct: 115 --DDYVVYDERNKQFVGKEKKYLLKIGDLVRARIINISAKSKVIRENR---------IGL 163
Query: 180 SIDYDGLGPVSW 191
++ GLG W
Sbjct: 164 TMRQPGLGKFEW 175
>gi|333910904|ref|YP_004484637.1| DNA-directed RNA polymerase [Methanotorris igneus Kol 5]
gi|333751493|gb|AEF96572.1| DNA-directed RNA polymerase [Methanotorris igneus Kol 5]
Length = 188
Score = 56.6 bits (135), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 49/192 (25%), Positives = 93/192 (48%), Gaps = 18/192 (9%)
Query: 1 MFYLSKIEHTLRLPPHLLRLPLNEAIKLELENVFLDKVIANLGLCISIYDIKEIEGGFVY 60
M+ + I +R+PP++ PL E I L + + ++G +SI D+KEI G +
Sbjct: 1 MYKILTISDVIRVPPNMFGRPLKETITNILREKYEGILDRDIGFILSIVDVKEIGEGKII 60
Query: 61 PGEGASTHTVKFRLVVFRPFVGEIIAAKLKESDANGLRLSLGFFEDIYVPSHLLPSPSRS 120
G+GA+ H V F +++ P + E++ ++ + G + LG + + S ++
Sbjct: 61 HGDGAAYHPVVFDALIYIPELHEVVEGEIVDIVEFGAFVRLGPLDGLIHISQIM------ 114
Query: 121 EPDPYGRYEVKWIWEFG-DTKYVIDGLDEIKFRVLSVNYPSIPIEQAEGSKPFAPMVING 179
D Y Y+ K G +T V++ D ++ R++++ S+ E+ GSK I
Sbjct: 115 --DDYVTYDPKREAIIGKETGKVLEIGDRVRARIVAI---SLREERKRGSK------IAL 163
Query: 180 SIDYDGLGPVSW 191
++ GLG + W
Sbjct: 164 TMRQPGLGKLEW 175
>gi|255513911|gb|EET90176.1| DNA-directed RNA polymerase [Candidatus Micrarchaeum acidiphilum
ARMAN-2]
Length = 195
Score = 56.6 bits (135), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 25/91 (27%), Positives = 51/91 (56%)
Query: 1 MFYLSKIEHTLRLPPHLLRLPLNEAIKLELENVFLDKVIANLGLCISIYDIKEIEGGFVY 60
M+ + I + ++PP + E L+ + K+ ++GL ++I+ IK+I G +Y
Sbjct: 1 MYAIYHIRDSFKMPPESFDKDIAEVAADVLQARYEGKIDKDIGLIVAIFGIKDITDGTIY 60
Query: 61 PGEGASTHTVKFRLVVFRPFVGEIIAAKLKE 91
PG+ ++ H V++ + + P VGE++A + E
Sbjct: 61 PGDPSTHHGVEYDALTYMPKVGEVVAGDVSE 91
>gi|374635070|ref|ZP_09706675.1| DNA-directed RNA polymerase [Methanotorris formicicus Mc-S-70]
gi|373563472|gb|EHP89666.1| DNA-directed RNA polymerase [Methanotorris formicicus Mc-S-70]
Length = 187
Score = 56.6 bits (135), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 50/192 (26%), Positives = 93/192 (48%), Gaps = 18/192 (9%)
Query: 1 MFYLSKIEHTLRLPPHLLRLPLNEAIKLELENVFLDKVIANLGLCISIYDIKEIEGGFVY 60
M+ + I +R+PP + PL E I L + + ++G +SI D+KEI G V
Sbjct: 1 MYKILTISDIIRVPPRMFGRPLKETITKILREKYEGILDKDIGFILSIVDLKEIGEGKVI 60
Query: 61 PGEGASTHTVKFRLVVFRPFVGEIIAAKLKESDANGLRLSLGFFEDIYVPSHLLPSPSRS 120
G+GA+ H V F +++ P + E++ ++ + G + LG + + S ++
Sbjct: 61 HGDGAAYHPVVFDTLIYVPELHEVVEGEIVDIVEFGAFVRLGPLDGLIHISQIM------ 114
Query: 121 EPDPYGRYEVKWIWEFG-DTKYVIDGLDEIKFRVLSVNYPSIPIEQAEGSKPFAPMVING 179
D Y Y+ K G +T V++ D+++ R++++ S+ E+ GSK I
Sbjct: 115 --DDYVSYDPKREAIIGRETGKVLEIGDKVRARIVAI---SLREERRRGSK------IAL 163
Query: 180 SIDYDGLGPVSW 191
++ GLG + W
Sbjct: 164 TMRQVGLGKLEW 175
>gi|417408664|gb|JAA50874.1| Putative dna-directed rna polymerase ii subunit rpb7-like protein,
partial [Desmodus rotundus]
Length = 209
Score = 56.6 bits (135), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 38/150 (25%), Positives = 66/150 (44%), Gaps = 6/150 (4%)
Query: 7 IEHTLRLPPHLLRLPLNEAIKLELENVFLDKVIANLGLCISIYDIKEIEGGFVYPGEGAS 66
+EH + L P L +K +L G I++ I I G + PG G
Sbjct: 44 LEHEILLHPRYFGPNLLNTVKQKLFTEVEGTCTGKYGFVIAVTTIDNIGAGVIQPGRGFV 103
Query: 67 THTVKFRLVVFRPFVGEIIAAKLKESDANGLRLSLGFFEDIYVPSHLLPSPSRSEPDPYG 126
+ VK++ +VFRPF GE++ A + + + GL +G ++ H +PS +P+
Sbjct: 104 LYPVKYKAIVFRPFKGEVVDAVVTQVNKVGLFTEIGPMS-CFISRHSIPSEMEFDPNSN- 161
Query: 127 RYEVKWIWEFGDTKYVIDGLDEIKFRVLSV 156
++ D VI DEI+ +++
Sbjct: 162 ----PPCYKTMDEDIVIQQDDEIRLKIVGT 187
>gi|296083541|emb|CBI23534.3| unnamed protein product [Vitis vinifera]
Length = 170
Score = 56.6 bits (135), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 29/52 (55%), Positives = 37/52 (71%), Gaps = 5/52 (9%)
Query: 1 MFYLSKIEHTLRLPPHLLRLPLNEAIKLELENVFLDKVIANLGLCISIYDIK 52
MF+LS IEHT++L HLL LPLNEA+K E E++FLDK G C S+ + K
Sbjct: 1 MFFLSLIEHTVQLRHHLLDLPLNEAVKGEFESLFLDK-----GWCASVLNKK 47
>gi|408398876|gb|EKJ78002.1| hypothetical protein FPSE_01790 [Fusarium pseudograminearum CS3096]
Length = 172
Score = 56.2 bits (134), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 37/123 (30%), Positives = 62/123 (50%), Gaps = 2/123 (1%)
Query: 1 MFYLSKIEHTLRLPPHLLRLPLNEAIKLELENVFLDKVIANLGLCISIYDIKEIEGGFVY 60
MF+L +E + L P + ++E + +L ++ A ISI D EI G +
Sbjct: 1 MFFLYNLERKVTLHPSFMGRNMHELVTGKLLKD-VEGTCAGSYFIISIMDAFEISEGRIL 59
Query: 61 PGEGASTHTVKFRLVVFRPFVGEIIAAKLKESDANGLRLSLGFFEDIYVPSHLLPSPSRS 120
PG G + TV +R VV+RPF GE + A + + G G ++V +HL+P+ +
Sbjct: 60 PGLGMAEFTVGYRAVVWRPFKGETVDAVVHSINPQGFFAHAGPLR-LFVSAHLIPNDVKW 118
Query: 121 EPD 123
+P+
Sbjct: 119 DPN 121
>gi|261197854|ref|XP_002625329.1| RNA polymerase II subunit 7 [Ajellomyces dermatitidis SLH14081]
gi|239595292|gb|EEQ77873.1| RNA polymerase II subunit 7 [Ajellomyces dermatitidis SLH14081]
Length = 169
Score = 56.2 bits (134), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 37/129 (28%), Positives = 63/129 (48%), Gaps = 14/129 (10%)
Query: 1 MFYLSKIEHTLRLPPHLLRLPLNEAIKLELENVFLDKVIANLGLC------ISIYDIKEI 54
MF++ +EH L L P + E + +L LD V G+C + + D +I
Sbjct: 1 MFFIHFLEHVLTLHPTFFGSHVKEYLTQKL----LDDV---EGVCTGDYYIVCVMDTYDI 53
Query: 55 EGGFVYPGEGASTHTVKFRLVVFRPFVGEIIAAKLKESDANGLRLSLGFFEDIYVPSHLL 114
G V PG G + +T+ +R +V++PF GE + A + G+ +G ++V HL+
Sbjct: 54 SEGRVLPGSGLAEYTIMYRAIVWKPFKGETVDAIVTSVKNQGIFAEVGQLT-VFVSKHLI 112
Query: 115 PSPSRSEPD 123
P + +PD
Sbjct: 113 PPEIKWDPD 121
>gi|333987965|ref|YP_004520572.1| DNA-directed RNA polymerase [Methanobacterium sp. SWAN-1]
gi|333826109|gb|AEG18771.1| DNA-directed RNA polymerase [Methanobacterium sp. SWAN-1]
Length = 197
Score = 56.2 bits (134), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 29/79 (36%), Positives = 46/79 (58%)
Query: 1 MFYLSKIEHTLRLPPHLLRLPLNEAIKLELENVFLDKVIANLGLCISIYDIKEIEGGFVY 60
M+ +SKIE T+R+PP PLN+ L ++ V LGL +++ +I++I G V
Sbjct: 1 MYLISKIEDTVRIPPSRFEEPLNDVAVELLNESYVGTVDKKLGLMVTVKEIEDIGVGNVI 60
Query: 61 PGEGASTHTVKFRLVVFRP 79
G+GA+ H V F + F+P
Sbjct: 61 MGDGAAYHDVVFTALSFKP 79
>gi|281352567|gb|EFB28151.1| hypothetical protein PANDA_014914 [Ailuropoda melanoleuca]
Length = 165
Score = 56.2 bits (134), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 38/148 (25%), Positives = 66/148 (44%), Gaps = 6/148 (4%)
Query: 7 IEHTLRLPPHLLRLPLNEAIKLELENVFLDKVIANLGLCISIYDIKEIEGGFVYPGEGAS 66
+EH + L P L +K +L G I++ I I G + PG G
Sbjct: 3 LEHEILLHPRYFGPNLLNTVKQKLFTEVEGTCTGKYGFVIAVTTIDNIGAGVIQPGRGFV 62
Query: 67 THTVKFRLVVFRPFVGEIIAAKLKESDANGLRLSLGFFEDIYVPSHLLPSPSRSEPDPYG 126
+ VK++ +VFRPF GE++ A + + + GL +G ++ H +PS +P+
Sbjct: 63 LYPVKYKAIVFRPFKGEVVDAVVTQVNKVGLFTEIGPMS-CFISRHSIPSEMEFDPNSN- 120
Query: 127 RYEVKWIWEFGDTKYVIDGLDEIKFRVL 154
++ D VI DEI+ +++
Sbjct: 121 ----PPCYKTMDEDIVIQQDDEIRLKIV 144
>gi|310790921|gb|EFQ26454.1| RNA polymerase Rpb7-like domain-containing protein [Glomerella
graminicola M1.001]
gi|380484883|emb|CCF39716.1| DNA-directed RNA polymerase II subunit RPB7 [Colletotrichum
higginsianum]
gi|429860547|gb|ELA35279.1| RNA polymerase ii subunit 7 [Colletotrichum gloeosporioides Nara
gc5]
Length = 171
Score = 56.2 bits (134), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 37/123 (30%), Positives = 61/123 (49%), Gaps = 2/123 (1%)
Query: 1 MFYLSKIEHTLRLPPHLLRLPLNEAIKLELENVFLDKVIANLGLCISIYDIKEIEGGFVY 60
MF+L +E + L P ++E + +L ++ A ISI D +I G +
Sbjct: 1 MFFLYNMERRVTLHPSYFGRNMHELVTSKLLKD-VEGTCAGSYYIISIMDTFDISEGRIL 59
Query: 61 PGEGASTHTVKFRLVVFRPFVGEIIAAKLKESDANGLRLSLGFFEDIYVPSHLLPSPSRS 120
PG G + TV +R VV+RPF GE + A + + G G ++V +HL+PS +
Sbjct: 60 PGSGLAEFTVGYRAVVWRPFKGETVDAVVYSVNHQGFFAQAGPLR-LFVSAHLIPSEIKW 118
Query: 121 EPD 123
+P+
Sbjct: 119 DPN 121
>gi|339522289|gb|AEJ84309.1| DNA-directed RNA polymerase II subunit G [Capra hircus]
Length = 172
Score = 56.2 bits (134), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 41/160 (25%), Positives = 68/160 (42%), Gaps = 14/160 (8%)
Query: 1 MFYLSKIEHTLRLPPHLLRLPLNEAIKLELENVFLDKVIANLGLCISIYDIKEIEGGFVY 60
MFY + + LPP L +K +L G I++ I I G +
Sbjct: 1 MFYHISLGPEILLPPRYFGPNLLNTVKQKLFTEAEGTCTGKYGFVIAVTTIDNIGAGVIQ 60
Query: 61 PGEGASTHTVKFRLVVFRPFVGEIIAAKLKESDANGLRLSLG----FFEDIYVPSHLLPS 116
PG G + VK++ +VFRPF GE++ A + + + GL +G F +PS +
Sbjct: 61 PGRGFVLYPVKYKAIVFRPFKGEVVDAVVTQVNKVGLFTEIGPMSCFISRHSIPSEMGFY 120
Query: 117 PSRSEPDPYGRYEVKWIWEFGDTKYVIDGLDEIKFRVLSV 156
P+ + P ++ D VI DEI+ +++
Sbjct: 121 PNSNPP----------CYKTMDEDIVIQQDDEIRLKIVGT 150
>gi|307183360|gb|EFN70218.1| DNA-directed RNA polymerase II subunit RPB7 [Camponotus floridanus]
Length = 249
Score = 56.2 bits (134), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 36/161 (22%), Positives = 71/161 (44%), Gaps = 6/161 (3%)
Query: 3 YLSKIEHTLRLPPHLLRLPLNEAIKLELENVFLDKVIANLGLCISIYDIKEIEGGFVYPG 62
Y+ +EH + L P L + +K +L G +++ I I G + PG
Sbjct: 79 YMISLEHEILLHPRYFGPQLLDTVKQKLYTEVEGTCTGKYGFVVAVTTIDNIGAGIIQPG 138
Query: 63 EGASTHTVKFRLVVFRPFVGEIIAAKLKESDANGLRLSLGFFEDIYVPSHLLPSPSRSEP 122
+G + VK++ +VFRPF GE++ A + + + G+ +G ++ H +P + P
Sbjct: 139 QGFVVYPVKYKAIVFRPFKGEVLDAIVTQVNKVGMFAEIGPLS-CFISHHSIPEDMQFCP 197
Query: 123 DPYGRYEVKWIWEFGDTKYVIDGLDEIKFRVLSVNYPSIPI 163
+ ++ + VI DEI+ +++ + I
Sbjct: 198 NVN-----PACYKSKEEDVVIQADDEIRLKIVGTRVDATGI 233
>gi|387593677|gb|EIJ88701.1| hypothetical protein NEQG_01391 [Nematocida parisii ERTm3]
gi|387597334|gb|EIJ94954.1| hypothetical protein NEPG_00479 [Nematocida parisii ERTm1]
Length = 174
Score = 55.8 bits (133), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 46/178 (25%), Positives = 81/178 (45%), Gaps = 30/178 (16%)
Query: 22 LNEAIKLELENVFLDKVIANLGLCISIYDIK-----EIEGGFVYPGEGASTHTVKFRLVV 76
++ AI L+ K++ +G+ + IK EI G +YP V ++L++
Sbjct: 20 IDAAILSTLQKRVPGKIVNGIGISLFPVRIKTVTDVEIHEGLLYP-------LVCYKLII 72
Query: 77 FRPFVGEIIAAKLKESDANGLRLSLGFFEDIYVPSHLLPSPSR--SEPDPYGRYEVKWIW 134
++ GEI+ +++ D+ G+ L+ ++VP+ LPS S + G W W
Sbjct: 73 YQAIPGEILVCTVEKQDSTGILLAHPLLPSLFVPASQLPSSSELTAVSGRMGSTVDIWGW 132
Query: 135 EFGDTKYVIDGLDEIKFRVLSVNYPSIPIEQAEGSKPFAPMVINGSIDYDGLGPVSWW 192
++ + + + K V+S N+ SK +A ING GLGP+SWW
Sbjct: 133 KYNECILYVRMGELCKVSVVSTNH----------SKIYA--TING----PGLGPISWW 174
>gi|261335365|emb|CBH18359.1| RNA polymerase subunit, putative [Trypanosoma brucei gambiense
DAL972]
Length = 247
Score = 55.8 bits (133), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 28/101 (27%), Positives = 55/101 (54%), Gaps = 1/101 (0%)
Query: 19 RLPLNEAIKLELENVFLDKVIANLGLCISIYDIKEIEGGFVYPGEGASTHTVKFRLVVFR 78
+ +++ + L ++ +++ +LGLC++I+++ G V ++ TV+FR+ VF
Sbjct: 43 QCTVDDILMHRLTERYVGRIVPSLGLCVAIHEVAHYTSGIVRGSSASAWFTVQFRVCVFS 102
Query: 79 PFVGEIIAAKLKESDANGLRLSLGFFEDI-YVPSHLLPSPS 118
P G + A + G+ LSL FF+ + +VP L +PS
Sbjct: 103 PTPGARVRATIGAQTREGIFLSLDFFQFVFFVPGDQLIAPS 143
>gi|393248136|gb|EJD55643.1| hypothetical protein AURDEDRAFT_78882 [Auricularia delicata
TFB-10046 SS5]
Length = 170
Score = 55.8 bits (133), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 33/128 (25%), Positives = 61/128 (47%), Gaps = 11/128 (8%)
Query: 1 MFYLSKIEHTLRLPPHLLRLPLNEAIKLELENVFLDKVIANLGLCISIYDIKEIEGGFVY 60
MF++ ++ HT+ L P + E ++ +L G I++ D+ +I G V
Sbjct: 1 MFFIKELTHTILLHPSYFGPRMQEFLEKKLYADVEGTCSGQFGYIIAVIDLVDIGRGIVL 60
Query: 61 PGEGASTHTVKFRLVVFRPFVGEIIAAKLKESDANGLRLSLGFFED-----IYVPSHLLP 115
PG G + ++R +VF+PF GE++ + L +GFF D ++V + L+
Sbjct: 61 PGSGQAEFVTRYRAIVFKPFKGEVVDGVVSSV------LKMGFFADVGPLSVFVSAQLIH 114
Query: 116 SPSRSEPD 123
R +P+
Sbjct: 115 PDMRFDPN 122
>gi|340517390|gb|EGR47634.1| predicted protein [Trichoderma reesei QM6a]
Length = 170
Score = 55.8 bits (133), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 37/123 (30%), Positives = 61/123 (49%), Gaps = 2/123 (1%)
Query: 1 MFYLSKIEHTLRLPPHLLRLPLNEAIKLELENVFLDKVIANLGLCISIYDIKEIEGGFVY 60
MF+L +E + L P ++E + +L ++ A ISI D +I G +
Sbjct: 1 MFFLYNMERRVTLHPSYFGRNMHELVTSKLLKD-VEGTCAGSYYIISIMDTFDISEGKIL 59
Query: 61 PGEGASTHTVKFRLVVFRPFVGEIIAAKLKESDANGLRLSLGFFEDIYVPSHLLPSPSRS 120
PG G + TV +R VV+RPF GE + A + + G G ++V +HL+PS +
Sbjct: 60 PGNGLAEFTVGYRAVVWRPFKGETVDAVVYSINPQGFFAQAGPLR-LFVSAHLIPSDIKW 118
Query: 121 EPD 123
+P+
Sbjct: 119 DPN 121
>gi|74025630|ref|XP_829381.1| hypothetical protein [Trypanosoma brucei brucei strain 927/4
GUTat10.1]
gi|70834767|gb|EAN80269.1| hypothetical protein, conserved [Trypanosoma brucei brucei strain
927/4 GUTat10.1]
Length = 247
Score = 55.8 bits (133), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 28/101 (27%), Positives = 55/101 (54%), Gaps = 1/101 (0%)
Query: 19 RLPLNEAIKLELENVFLDKVIANLGLCISIYDIKEIEGGFVYPGEGASTHTVKFRLVVFR 78
+ +++ + L ++ +++ +LGLC++I+++ G V ++ TV+FR+ VF
Sbjct: 43 QCTVDDILMHRLTERYVGRIVPSLGLCVAIHEVAHYTSGIVRGSSASAWFTVQFRVCVFS 102
Query: 79 PFVGEIIAAKLKESDANGLRLSLGFFEDI-YVPSHLLPSPS 118
P G + A + G+ LSL FF+ + +VP L +PS
Sbjct: 103 PTPGARVRATIGAQTREGIFLSLDFFQFVFFVPGDQLIAPS 143
>gi|322697943|gb|EFY89717.1| putative DNA-directed RNA polymerase II chain Rpb7 [Metarhizium
acridum CQMa 102]
Length = 174
Score = 55.8 bits (133), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 37/123 (30%), Positives = 61/123 (49%), Gaps = 2/123 (1%)
Query: 1 MFYLSKIEHTLRLPPHLLRLPLNEAIKLELENVFLDKVIANLGLCISIYDIKEIEGGFVY 60
MF+L +E + L P ++E + +L ++ A ISI D +I G +
Sbjct: 1 MFFLYNMERRVTLHPSYFGRNMHELVTSKLLKD-VEGTCAGSYYIISIMDTFDISEGRIL 59
Query: 61 PGEGASTHTVKFRLVVFRPFVGEIIAAKLKESDANGLRLSLGFFEDIYVPSHLLPSPSRS 120
PG G + TV +R VV+RPF GE + A + + G G ++V +HL+PS +
Sbjct: 60 PGNGLAEFTVGYRAVVWRPFKGETVDAVVYSINPQGFFAQAGPLR-LFVSAHLIPSDIKW 118
Query: 121 EPD 123
+P+
Sbjct: 119 DPN 121
>gi|303323777|ref|XP_003071880.1| DNA-directed RNA polymerase II, putative [Coccidioides posadasii
C735 delta SOWgp]
gi|240111582|gb|EER29735.1| DNA-directed RNA polymerase II, putative [Coccidioides posadasii
C735 delta SOWgp]
gi|320031834|gb|EFW13792.1| RNA polymerase II subunit 7 [Coccidioides posadasii str. Silveira]
gi|392867774|gb|EAS33470.2| RNA polymerase II subunit 7 [Coccidioides immitis RS]
Length = 169
Score = 55.8 bits (133), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 36/129 (27%), Positives = 61/129 (47%), Gaps = 14/129 (10%)
Query: 1 MFYLSKIEHTLRLPPHLLRLPLNEAIKLELENVFLDKVIANLGLC------ISIYDIKEI 54
MF++ +EH L L P +K L LD V G+C + + D +I
Sbjct: 1 MFFIHFLEHVLTLHPSFF----GSHVKEYLTQKLLDDV---EGICTGDYYIVCVMDTYDI 53
Query: 55 EGGFVYPGEGASTHTVKFRLVVFRPFVGEIIAAKLKESDANGLRLSLGFFEDIYVPSHLL 114
G + PG G + +T+ +R +V++PF GE + A + G+ +G ++V HL+
Sbjct: 54 SEGRIIPGSGMAEYTIMYRAIVWKPFKGETVDAIVTSVKNQGIFAEVGPLT-VFVSKHLI 112
Query: 115 PSPSRSEPD 123
P + +PD
Sbjct: 113 PPEIKWDPD 121
>gi|332024088|gb|EGI64305.1| DNA-directed RNA polymerase II subunit RPB7 [Acromyrmex echinatior]
Length = 267
Score = 55.5 bits (132), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 36/161 (22%), Positives = 70/161 (43%), Gaps = 6/161 (3%)
Query: 3 YLSKIEHTLRLPPHLLRLPLNEAIKLELENVFLDKVIANLGLCISIYDIKEIEGGFVYPG 62
Y +EH + L P L + +K +L G +++ I I G + PG
Sbjct: 89 YTISLEHEILLHPRYFGPQLLDTVKQKLYTEVEGTCTGKYGFVVAVTTIDNIGAGIIQPG 148
Query: 63 EGASTHTVKFRLVVFRPFVGEIIAAKLKESDANGLRLSLGFFEDIYVPSHLLPSPSRSEP 122
+G + VK++ +VFRPF GE++ A + + + G+ +G ++ H +P + P
Sbjct: 149 QGFVVYPVKYKAIVFRPFKGEVLDAIVTQVNKVGMFAEIGPLS-CFISHHSIPEDMQFCP 207
Query: 123 DPYGRYEVKWIWEFGDTKYVIDGLDEIKFRVLSVNYPSIPI 163
+ ++ + VI DEI+ +++ + I
Sbjct: 208 NVN-----PACYKSKEEDVVIQADDEIRLKIVGTRVDATGI 243
>gi|119188519|ref|XP_001244866.1| hypothetical protein CIMG_04307 [Coccidioides immitis RS]
Length = 180
Score = 55.5 bits (132), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 36/129 (27%), Positives = 61/129 (47%), Gaps = 14/129 (10%)
Query: 1 MFYLSKIEHTLRLPPHLLRLPLNEAIKLELENVFLDKVIANLGLC------ISIYDIKEI 54
MF++ +EH L L P +K L LD V G+C + + D +I
Sbjct: 1 MFFIHFLEHVLTLHPSFF----GSHVKEYLTQKLLDDV---EGICTGDYYIVCVMDTYDI 53
Query: 55 EGGFVYPGEGASTHTVKFRLVVFRPFVGEIIAAKLKESDANGLRLSLGFFEDIYVPSHLL 114
G + PG G + +T+ +R +V++PF GE + A + G+ +G ++V HL+
Sbjct: 54 SEGRIIPGSGMAEYTIMYRAIVWKPFKGETVDAIVTSVKNQGIFAEVGPLT-VFVSKHLI 112
Query: 115 PSPSRSEPD 123
P + +PD
Sbjct: 113 PPEIKWDPD 121
>gi|226291032|gb|EEH46460.1| RNA polymerase II subunit 7 [Paracoccidioides brasiliensis Pb18]
Length = 169
Score = 55.5 bits (132), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 37/129 (28%), Positives = 61/129 (47%), Gaps = 14/129 (10%)
Query: 1 MFYLSKIEHTLRLPPHLLRLPLNEAIKLELENVFLDKVIANLGLC------ISIYDIKEI 54
MF++ +EH L L P +K L LD V G+C + + D +I
Sbjct: 1 MFFIHFLEHVLTLHPTFF----GSHVKEYLTQKLLDDV---EGVCTGDYYIVCVMDTYDI 53
Query: 55 EGGFVYPGEGASTHTVKFRLVVFRPFVGEIIAAKLKESDANGLRLSLGFFEDIYVPSHLL 114
G V PG G + +T+ +R +V++PF GE + A + G+ +G ++V HL+
Sbjct: 54 SEGRVIPGSGLAEYTIMYRAIVWKPFKGETVDAVVTSVKNQGIFAEVGPLT-VFVSKHLI 112
Query: 115 PSPSRSEPD 123
P + +PD
Sbjct: 113 PPEIKWDPD 121
>gi|239607718|gb|EEQ84705.1| RNA polymerase II subunit 7 [Ajellomyces dermatitidis ER-3]
gi|327355593|gb|EGE84450.1| RNA polymerase II subunit 7 [Ajellomyces dermatitidis ATCC 18188]
Length = 169
Score = 55.5 bits (132), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 37/129 (28%), Positives = 61/129 (47%), Gaps = 14/129 (10%)
Query: 1 MFYLSKIEHTLRLPPHLLRLPLNEAIKLELENVFLDKVIANLGLC------ISIYDIKEI 54
MF++ +EH L L P +K L LD V G+C + + D +I
Sbjct: 1 MFFIHFLEHVLTLHPTFF----GSHVKEYLTQKLLDDV---EGVCTGDYYIVCVMDTYDI 53
Query: 55 EGGFVYPGEGASTHTVKFRLVVFRPFVGEIIAAKLKESDANGLRLSLGFFEDIYVPSHLL 114
G V PG G + +T+ +R +V++PF GE + A + G+ +G ++V HL+
Sbjct: 54 SEGRVLPGSGLAEYTIMYRAIVWKPFKGETVDAIVTSVKNQGIFAEVGPLT-VFVSKHLI 112
Query: 115 PSPSRSEPD 123
P + +PD
Sbjct: 113 PPEIKWDPD 121
>gi|154283689|ref|XP_001542640.1| hypothetical protein HCAG_02811 [Ajellomyces capsulatus NAm1]
gi|150410820|gb|EDN06208.1| hypothetical protein HCAG_02811 [Ajellomyces capsulatus NAm1]
gi|225561964|gb|EEH10244.1| RNA polymerase II subunit 7 [Ajellomyces capsulatus G186AR]
gi|240275577|gb|EER39091.1| RNA polymerase II subunit 7 [Ajellomyces capsulatus H143]
gi|325091406|gb|EGC44716.1| RNA polymerase II subunit 7 [Ajellomyces capsulatus H88]
Length = 169
Score = 55.5 bits (132), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 37/129 (28%), Positives = 61/129 (47%), Gaps = 14/129 (10%)
Query: 1 MFYLSKIEHTLRLPPHLLRLPLNEAIKLELENVFLDKVIANLGLC------ISIYDIKEI 54
MF++ +EH L L P +K L LD V G+C + + D +I
Sbjct: 1 MFFIHFLEHVLTLHPTFF----GSHVKEYLTQKLLDDV---EGVCTGDYYIVCVMDTYDI 53
Query: 55 EGGFVYPGEGASTHTVKFRLVVFRPFVGEIIAAKLKESDANGLRLSLGFFEDIYVPSHLL 114
G V PG G + +T+ +R +V++PF GE + A + G+ +G ++V HL+
Sbjct: 54 SEGRVLPGSGLAEYTIMYRAIVWKPFKGETVDAIVTSVKNQGIFAEVGPLT-VFVSKHLI 112
Query: 115 PSPSRSEPD 123
P + +PD
Sbjct: 113 PPEIKWDPD 121
>gi|327305241|ref|XP_003237312.1| RNA polymerase II subunit 7 [Trichophyton rubrum CBS 118892]
gi|326460310|gb|EGD85763.1| RNA polymerase II subunit 7 [Trichophyton rubrum CBS 118892]
Length = 191
Score = 55.5 bits (132), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 36/129 (27%), Positives = 62/129 (48%), Gaps = 14/129 (10%)
Query: 1 MFYLSKIEHTLRLPPHLLRLPLNEAIKLELENVFLDKVIANLGLC------ISIYDIKEI 54
MF++ +EH L L P +K L LD V G+C + + D+ +I
Sbjct: 1 MFFIHFLEHVLTLHPSFF----GSHVKEYLSQKLLDDV---EGICTGDYYIVCVMDMYDI 53
Query: 55 EGGFVYPGEGASTHTVKFRLVVFRPFVGEIIAAKLKESDANGLRLSLGFFEDIYVPSHLL 114
G + PG G + +T+ +R +V++PF GE + A + G+ +G ++V HL+
Sbjct: 54 SEGKIIPGSGLAEYTIVYRAIVWKPFKGETVDAIVTSVKNQGIFAEVGPLT-VFVSKHLI 112
Query: 115 PSPSRSEPD 123
P + +PD
Sbjct: 113 PPEIKWDPD 121
>gi|401885038|gb|EJT49169.1| hypothetical protein A1Q1_01650 [Trichosporon asahii var. asahii
CBS 2479]
Length = 171
Score = 55.5 bits (132), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 30/123 (24%), Positives = 60/123 (48%), Gaps = 1/123 (0%)
Query: 1 MFYLSKIEHTLRLPPHLLRLPLNEAIKLELENVFLDKVIANLGLCISIYDIKEIEGGFVY 60
MF++ ++ HT+ L P L + +KL+L G IS+ ++ +I G +
Sbjct: 1 MFFIRELTHTILLHPSYFGAQLEDYLKLKLYEDVEGTCSGKHGYIISVVNVTDIGEGKIM 60
Query: 61 PGEGASTHTVKFRLVVFRPFVGEIIAAKLKESDANGLRLSLGFFEDIYVPSHLLPSPSRS 120
P G + + +V +PF GE++ K+ + G +G + ++V SHL+ + +
Sbjct: 61 PSTGQARFKCSYTAIVMKPFKGEVVDGKVSNVNKMGFFAHVGPLQ-VFVSSHLVHADMKF 119
Query: 121 EPD 123
+P+
Sbjct: 120 DPN 122
>gi|295665476|ref|XP_002793289.1| DNA-directed RNA polymerase II subunit RPB7 [Paracoccidioides sp.
'lutzii' Pb01]
gi|226278203|gb|EEH33769.1| DNA-directed RNA polymerase II subunit RPB7 [Paracoccidioides sp.
'lutzii' Pb01]
Length = 202
Score = 55.5 bits (132), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 37/129 (28%), Positives = 61/129 (47%), Gaps = 14/129 (10%)
Query: 1 MFYLSKIEHTLRLPPHLLRLPLNEAIKLELENVFLDKVIANLGLC------ISIYDIKEI 54
MF++ +EH L L P +K L LD V G+C + + D +I
Sbjct: 1 MFFIHFLEHVLTLHPTFF----GSHVKEYLTQKLLDDV---EGVCTGDYYIVCVMDTYDI 53
Query: 55 EGGFVYPGEGASTHTVKFRLVVFRPFVGEIIAAKLKESDANGLRLSLGFFEDIYVPSHLL 114
G V PG G + +T+ +R +V++PF GE + A + G+ +G ++V HL+
Sbjct: 54 SEGRVIPGSGLAEYTIMYRAIVWKPFKGETVDAVVTSVKNQGIFAEVGPLT-VFVSKHLI 112
Query: 115 PSPSRSEPD 123
P + +PD
Sbjct: 113 PPEIKWDPD 121
>gi|312136667|ref|YP_004004004.1| DNA-directed RNA polymerase, subunit e' [Methanothermus fervidus
DSM 2088]
gi|311224386|gb|ADP77242.1| DNA-directed RNA polymerase, subunit E' [Methanothermus fervidus
DSM 2088]
Length = 193
Score = 55.5 bits (132), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 51/192 (26%), Positives = 91/192 (47%), Gaps = 19/192 (9%)
Query: 1 MFYLSKIEHTLRLPPHLLRLPLNEAIKLELENVFLDKVIANLGLCISIYDIKEIEGGFVY 60
M+YL+K+ +T+R+PP PL E + L + LG I+I +I++I G V
Sbjct: 1 MYYLTKLVNTVRVPPSRFEEPLEEVVMDILTQSLVGTFDKKLGFMIAIKNIEDIGVGKVI 60
Query: 61 PGEGASTHTVKFRLVVFRPFVGEIIAAKLKESDANGLRLSLGFFEDIYVPSHLLPSPSRS 120
G+GA+ + V F + F+P + EII ++ E G + +G + + S +
Sbjct: 61 IGDGAAYYDVTFNALFFKPELHEIIEGEVIEITEFGAFVRIGPVDGLVHISQI------- 113
Query: 121 EPDPYGRYEVKWIWEFG-DTKYVIDGLDEIKFRVLSVNYPSIPIEQAEGSKPFAPMVING 179
D Y Y+ K G +TK V+ D+++ R+++++ +P++ G P
Sbjct: 114 -TDDYIDYDPKNCILVGKETKRVLKEGDKVRARIVAISTKQLPLKVNIGLTMRQP----- 167
Query: 180 SIDYDGLGPVSW 191
GLG + W
Sbjct: 168 -----GLGKLEW 174
>gi|296805993|ref|XP_002843816.1| DNA-directed RNA polymerase II subunit RPB7 [Arthroderma otae CBS
113480]
gi|238845118|gb|EEQ34780.1| DNA-directed RNA polymerase II subunit RPB7 [Arthroderma otae CBS
113480]
Length = 169
Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 36/129 (27%), Positives = 62/129 (48%), Gaps = 14/129 (10%)
Query: 1 MFYLSKIEHTLRLPPHLLRLPLNEAIKLELENVFLDKVIANLGLC------ISIYDIKEI 54
MF++ +EH L L P +K L LD V G+C + + D+ +I
Sbjct: 1 MFFIHFLEHVLTLHPSFF----GSHVKEYLTQKLLDDV---EGVCTGDYYIVCVMDMYDI 53
Query: 55 EGGFVYPGEGASTHTVKFRLVVFRPFVGEIIAAKLKESDANGLRLSLGFFEDIYVPSHLL 114
G + PG G + +T+ +R +V++PF GE + A + G+ +G ++V HL+
Sbjct: 54 SEGKIIPGSGLAEYTIVYRAIVWKPFKGETVDAIVTSVKNQGIFAEVGPLT-VFVSKHLI 112
Query: 115 PSPSRSEPD 123
P + +PD
Sbjct: 113 PPEIKWDPD 121
>gi|50426557|ref|XP_461875.1| DEHA2G07546p [Debaryomyces hansenii CBS767]
gi|49657545|emb|CAG90338.1| DEHA2G07546p [Debaryomyces hansenii CBS767]
Length = 173
Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 35/129 (27%), Positives = 61/129 (47%), Gaps = 13/129 (10%)
Query: 1 MFYLSKIEHTLRLPPHLLRLPLNEAIKLELENVFLDKVIANLGLCISIYDIKEIE--GGF 58
MF+L + L L P +++ ++ +L + G + + D I+ G
Sbjct: 1 MFFLKDLSLNLTLHPSYFGPQMDQYLRDKLLSDVEGTCTGQFGYIVCVLDCMNIDVGKGR 60
Query: 59 VYPGEGASTHTVKFRLVVFRPFVGEIIAAKLKESDANGLRLSLGFFED-----IYVPSHL 113
V PG G + VK+R VV++PF GE++ A + + +GFF D ++V +HL
Sbjct: 61 VIPGSGVAEFEVKYRAVVWKPFKGEVVDAVVTTVN------KMGFFADVGPLSVFVSTHL 114
Query: 114 LPSPSRSEP 122
+PS + P
Sbjct: 115 IPSDMKFNP 123
>gi|225679312|gb|EEH17596.1| RNA polymerase II subunit 7 [Paracoccidioides brasiliensis Pb03]
Length = 195
Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 37/129 (28%), Positives = 61/129 (47%), Gaps = 14/129 (10%)
Query: 1 MFYLSKIEHTLRLPPHLLRLPLNEAIKLELENVFLDKVIANLGLC------ISIYDIKEI 54
MF++ +EH L L P +K L LD V G+C + + D +I
Sbjct: 1 MFFIHFLEHVLTLHPTFF----GSHVKEYLTQKLLDDV---EGVCTGDYYIVCVMDTYDI 53
Query: 55 EGGFVYPGEGASTHTVKFRLVVFRPFVGEIIAAKLKESDANGLRLSLGFFEDIYVPSHLL 114
G V PG G + +T+ +R +V++PF GE + A + G+ +G ++V HL+
Sbjct: 54 SEGRVIPGSGLAEYTIMYRAIVWKPFKGETVDAVVTSVKNQGIFAEVGPLT-VFVSKHLI 112
Query: 115 PSPSRSEPD 123
P + +PD
Sbjct: 113 PPEIKWDPD 121
>gi|331246804|ref|XP_003336033.1| DNA-directed RNA polymerase II subunit rpb7 [Puccinia graminis f.
sp. tritici CRL 75-36-700-3]
gi|309315023|gb|EFP91614.1| DNA-directed RNA polymerase II subunit rpb7 [Puccinia graminis f.
sp. tritici CRL 75-36-700-3]
Length = 172
Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 29/123 (23%), Positives = 60/123 (48%), Gaps = 1/123 (0%)
Query: 1 MFYLSKIEHTLRLPPHLLRLPLNEAIKLELENVFLDKVIANLGLCISIYDIKEIEGGFVY 60
MF++ ++ HT+ L P ++ ++ +L G I++ I G +
Sbjct: 1 MFFIKELSHTINLHPSFFGPRTSKFLEDKLNRDVEGTCTGRFGYIIAVLRTLSISAGTIQ 60
Query: 61 PGEGASTHTVKFRLVVFRPFVGEIIAAKLKESDANGLRLSLGFFEDIYVPSHLLPSPSRS 120
PG G + +K+ +V +PF GE++ + + + G + +G + +V SHL+PS +
Sbjct: 61 PGTGMAEFVMKYSAIVLKPFKGEVVDGIVGQVNKMGFFVEVGPLQ-AFVSSHLIPSDLKF 119
Query: 121 EPD 123
+P+
Sbjct: 120 DPN 122
>gi|242398022|ref|YP_002993446.1| DNA-directed RNA polymerase, subunit E' [Thermococcus sibiricus MM
739]
gi|242264415|gb|ACS89097.1| DNA-directed RNA polymerase, subunit E' [Thermococcus sibiricus MM
739]
Length = 187
Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 43/192 (22%), Positives = 91/192 (47%), Gaps = 18/192 (9%)
Query: 1 MFYLSKIEHTLRLPPHLLRLPLNEAIKLELENVFLDKVIANLGLCISIYDIKEIEGGFVY 60
M+ L +++ +R+PP + L EA K+ L + + G+ +++ ++ EI G +
Sbjct: 1 MYRLLRVKDIVRIPPKMFTLDPKEAAKIVLREAYEGIYNKDEGVVLAVLEVHEISEGVII 60
Query: 61 PGEGASTHTVKFRLVVFRPFVGEIIAAKLKESDANGLRLSLGFFEDIYVPSHLLPSPSRS 120
PG+GA+ H V F ++V++P + E++ ++ + G + +G + + S L+
Sbjct: 61 PGDGATYHDVVFDVLVWKPEMHEVVEGEVIDVVPYGAFIRIGPMDGLVHISQLM------ 114
Query: 121 EPDPYGRYEVKWIWEFGDTK-YVIDGLDEIKFRVLSVNYPSIPIEQAEGSKPFAPMVING 179
D Y ++ K G K +V+ D ++ R++++ +E SK +
Sbjct: 115 --DDYVVFDEKNAQFVGKEKGHVLKLGDVVRARIIAI---------SEKSKIIRENKVGL 163
Query: 180 SIDYDGLGPVSW 191
++ GLG W
Sbjct: 164 TMRQPGLGKFDW 175
>gi|405952867|gb|EKC20626.1| DNA-directed RNA polymerase II subunit RPB7 [Crassostrea gigas]
Length = 191
Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 34/123 (27%), Positives = 56/123 (45%), Gaps = 1/123 (0%)
Query: 1 MFYLSKIEHTLRLPPHLLRLPLNEAIKLELENVFLDKVIANLGLCISIYDIKEIEGGFVY 60
MFY +EH + L P L +K +L G I++ I I G +
Sbjct: 1 MFYHVSLEHEILLHPRYFGPNLLNIVKQKLFTEVEGTCTGKYGFVIAVTTIDNIGAGTIQ 60
Query: 61 PGEGASTHTVKFRLVVFRPFVGEIIAAKLKESDANGLRLSLGFFEDIYVPSHLLPSPSRS 120
P G + VK++ +VFRPF GE++ A + + + GL +G +V H +P+
Sbjct: 61 PSRGFVVYPVKYKAIVFRPFKGEVLDAVVTQVNKVGLFTEIGPLS-CFVSRHSIPANMEF 119
Query: 121 EPD 123
+P+
Sbjct: 120 DPN 122
>gi|322709216|gb|EFZ00792.1| DNA-directed RNA polymerase III subunit 22.9 kDa, putative
[Metarhizium anisopliae ARSEF 23]
Length = 109
Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 32/110 (29%), Positives = 51/110 (46%), Gaps = 10/110 (9%)
Query: 87 AKLKESDANGLRLSLGFFEDIYVPSHLLPSPSRSEPDPYGRYEVKWIWEFGDTKYVIDGL 146
+++ S G+ L FF+DI++P LP + Y E WIW D + D
Sbjct: 3 GRIRSSTPAGINLRTDFFDDIFIPFEELPQGAE-----YNHSEQLWIWNLEDDRLFYDNH 57
Query: 147 DEIKFRVLSVNY----PSIPIEQAEGSKPFAPMVINGSIDYDGLGPVSWW 192
+ ++F+V+ + P+ P Q E + P I GS+ +GLG WW
Sbjct: 58 EMVRFQVIDEEWHDQTPAGPT-QGEETPAKTPYRIKGSMAREGLGACLWW 106
>gi|56757637|gb|AAW26970.1| SJCHGC02592 protein [Schistosoma japonicum]
Length = 175
Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 34/127 (26%), Positives = 58/127 (45%), Gaps = 4/127 (3%)
Query: 1 MFYLSKIEHTLRLPPHLLRLPLNEAIKLELENVFLDKVIANLGLCISIYDIKEIEGGFVY 60
MFY K+EH + L P L E +K +L + G I++ +I+ I G +
Sbjct: 1 MFYHIKLEHEILLHPKYFGPNLTETVKTKLFSDVEGTCSGKYGFIIAVTNIEHIGAGIIQ 60
Query: 61 PGEGASTHTVKFRLVVFRPFVGEIIAAKLKESDANGLRLSLG----FFEDIYVPSHLLPS 116
P G + + +R +V+RPF GE++ A + + G+ G F VPS++
Sbjct: 61 PNRGFVQYRIVYRAIVYRPFKGEVVDAIVTQVTKVGVFAEAGPLTIFISKYSVPSNIKFE 120
Query: 117 PSRSEPD 123
+ + D
Sbjct: 121 GAETTTD 127
>gi|322692727|gb|EFY84619.1| DNA-directed rna polymerase III 25 kD polypeptide [Metarhizium
acridum CQMa 102]
Length = 109
Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 32/110 (29%), Positives = 51/110 (46%), Gaps = 10/110 (9%)
Query: 87 AKLKESDANGLRLSLGFFEDIYVPSHLLPSPSRSEPDPYGRYEVKWIWEFGDTKYVIDGL 146
+++ S G+ L FF+DI++P LP + Y E WIW D + D
Sbjct: 3 GRIRSSTPAGINLRTDFFDDIFIPFEELPQGAE-----YNHSEQLWIWNLEDDRLFYDNH 57
Query: 147 DEIKFRVLSVNY----PSIPIEQAEGSKPFAPMVINGSIDYDGLGPVSWW 192
+ ++F+V+ + P+ P Q E + P I GS+ +GLG WW
Sbjct: 58 EMVRFQVIDEEWHDQTPAGPT-QGEEAPAKTPYRIKGSMAREGLGACLWW 106
>gi|388856504|emb|CCF49810.1| probable DNA-directed RNA polymerase II chain Rpb7 [Ustilago
hordei]
Length = 170
Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 33/123 (26%), Positives = 57/123 (46%), Gaps = 1/123 (0%)
Query: 1 MFYLSKIEHTLRLPPHLLRLPLNEAIKLELENVFLDKVIANLGLCISIYDIKEIEGGFVY 60
MF+L + H L P + E + +L + G I + + ++ G V
Sbjct: 1 MFFLKYLTHKTELHPSYFGPSMVEFLNQKLRDDVEGTCTGKYGYIIKVVGMIDVGQGKVI 60
Query: 61 PGEGASTHTVKFRLVVFRPFVGEIIAAKLKESDANGLRLSLGFFEDIYVPSHLLPSPSRS 120
PG G + ++ VV +PF GE++ AK+ + G +G +I+V SHL+P R
Sbjct: 61 PGSGLAEFNSTYQAVVLKPFKGEVMDAKITNVNKMGFFAEVGPL-NIFVSSHLIPIEYRF 119
Query: 121 EPD 123
+P+
Sbjct: 120 QPE 122
>gi|358388804|gb|EHK26397.1| hypothetical protein TRIVIDRAFT_86417 [Trichoderma virens Gv29-8]
Length = 171
Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 36/123 (29%), Positives = 61/123 (49%), Gaps = 2/123 (1%)
Query: 1 MFYLSKIEHTLRLPPHLLRLPLNEAIKLELENVFLDKVIANLGLCISIYDIKEIEGGFVY 60
MF+L +E + L P +++ + +L ++ A ISI D +I G +
Sbjct: 1 MFFLYNMERRVTLHPSYFGRNMHDLVTSKLLKD-VEGTCAGSYYIISIMDTFDISEGRIL 59
Query: 61 PGEGASTHTVKFRLVVFRPFVGEIIAAKLKESDANGLRLSLGFFEDIYVPSHLLPSPSRS 120
PG G + TV +R VV+RPF GE + A + + G G ++V +HL+PS +
Sbjct: 60 PGNGLAEFTVGYRAVVWRPFKGETVDAVVYSINPQGFFAQAGPLR-LFVSAHLIPSDIKW 118
Query: 121 EPD 123
+P+
Sbjct: 119 DPN 121
>gi|71660071|ref|XP_821754.1| DNA-directed RNA polymerase III subunit [Trypanosoma cruzi strain
CL Brener]
gi|70887141|gb|EAN99903.1| DNA-directed RNA polymerase III subunit, putative [Trypanosoma
cruzi]
Length = 265
Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/101 (28%), Positives = 53/101 (52%), Gaps = 1/101 (0%)
Query: 19 RLPLNEAIKLELENVFLDKVIANLGLCISIYDIKEIEGGFVYPGEGASTHTVKFRLVVFR 78
++ + + L ++ K++ GLC++I+DI + G V ++ T +FRL +F
Sbjct: 54 QVTFEDILMHRLTERYVGKIVPGCGLCVAIHDILQYTQGIVRGPSASAWLTAQFRLCIFA 113
Query: 79 PFVGEIIAAKLKESDANGLRLSLGFFEDI-YVPSHLLPSPS 118
P G + A + G+ L+L FF+ + +VP LL +PS
Sbjct: 114 PTPGARLRATISAQTREGIYLTLEFFQFVFFVPGDLLVAPS 154
>gi|375082560|ref|ZP_09729616.1| DNA-directed RNA polymerase subunit E' [Thermococcus litoralis DSM
5473]
gi|374742780|gb|EHR79162.1| DNA-directed RNA polymerase subunit E' [Thermococcus litoralis DSM
5473]
Length = 187
Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 44/192 (22%), Positives = 89/192 (46%), Gaps = 18/192 (9%)
Query: 1 MFYLSKIEHTLRLPPHLLRLPLNEAIKLELENVFLDKVIANLGLCISIYDIKEIEGGFVY 60
M+ L +++ +R+PP + + EA K+ L + + G+ ++I D+ EI G +
Sbjct: 1 MYKLIQVKDVVRIPPKMFTMDPKEAAKIVLREAYEGIYDKDEGVILAILDVHEISEGVII 60
Query: 61 PGEGASTHTVKFRLVVFRPFVGEIIAAKLKESDANGLRLSLGFFEDIYVPSHLLPSPSRS 120
G+GA+ H F ++V++P + E++ ++ + G + +G + + S L+
Sbjct: 61 HGDGATYHEAVFDVLVWKPEMHEVVEGEVIDVVPYGAFIRIGPMDGLVHISQLM------ 114
Query: 121 EPDPYGRYEVKWIWEFGDTK-YVIDGLDEIKFRVLSVNYPSIPIEQAEGSKPFAPMVING 179
D Y ++ K G K Y++ D ++ R+++V +E SK I
Sbjct: 115 --DDYVVFDEKNAQFVGKEKGYILKLGDAVRARIIAV---------SEKSKIIRENKIGL 163
Query: 180 SIDYDGLGPVSW 191
++ GLG W
Sbjct: 164 TMRQPGLGKFDW 175
>gi|400601274|gb|EJP68917.1| RNA polymerase Rpb7-like domain-containing protein [Beauveria
bassiana ARSEF 2860]
Length = 219
Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 35/123 (28%), Positives = 61/123 (49%), Gaps = 2/123 (1%)
Query: 1 MFYLSKIEHTLRLPPHLLRLPLNEAIKLELENVFLDKVIANLGLCISIYDIKEIEGGFVY 60
MF+L +E + L P +++ + +L ++ A ISI D +I G +
Sbjct: 1 MFFLKNMERRVTLHPSYFGRNMHDLVTSKLLKD-VEGTCAGSYYIISIMDTFDISEGKIL 59
Query: 61 PGEGASTHTVKFRLVVFRPFVGEIIAAKLKESDANGLRLSLGFFEDIYVPSHLLPSPSRS 120
P G + TV +R VV+RPF GE + A + + G G ++V +HL+PS ++
Sbjct: 60 PSNGLAEFTVGYRAVVWRPFKGETVDAVVYSINPQGFFAQAGPLR-LFVSAHLIPSDTKW 118
Query: 121 EPD 123
+P+
Sbjct: 119 DPN 121
>gi|21226698|ref|NP_632620.1| DNA-directed RNA polymerase subunit E' [Methanosarcina mazei Go1]
gi|20904984|gb|AAM30292.1| DNA-directed RNA polymerase subunit E' [Methanosarcina mazei Go1]
Length = 194
Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 32/102 (31%), Positives = 55/102 (53%)
Query: 1 MFYLSKIEHTLRLPPHLLRLPLNEAIKLELENVFLDKVIANLGLCISIYDIKEIEGGFVY 60
M+ L K+ T+R+PP LL + IK L +V LG +++Y+I E+ G +
Sbjct: 1 MYKLMKLVDTVRIPPTLLGEEIMPTIKNALREKLEGQVDKKLGSLVAVYNIDEVGEGHIL 60
Query: 61 PGEGASTHTVKFRLVVFRPFVGEIIAAKLKESDANGLRLSLG 102
G+GA + V F ++F P + EII ++ E+ G+ + +G
Sbjct: 61 VGDGAVYYDVTFEAIMFYPDLQEIIEGEVVEAVGFGVFIGMG 102
>gi|367020616|ref|XP_003659593.1| hypothetical protein MYCTH_2123230 [Myceliophthora thermophila ATCC
42464]
gi|347006860|gb|AEO54348.1| hypothetical protein MYCTH_2123230 [Myceliophthora thermophila ATCC
42464]
Length = 171
Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 35/115 (30%), Positives = 58/115 (50%), Gaps = 2/115 (1%)
Query: 1 MFYLSKIEHTLRLPPHLLRLPLNEAIKLELENVFLDKVIANLGLCISIYDIKEIEGGFVY 60
MF+L +E + L P ++E + +L ++ A I+I D ++ G +
Sbjct: 1 MFFLHNLERRVTLHPSYFGRNMHELVTTKLVKD-VEGTCAGDYYIIAIMDTFDVSEGRIL 59
Query: 61 PGEGASTHTVKFRLVVFRPFVGEIIAAKLKESDANGLRLSLGFFEDIYVPSHLLP 115
PG G + TV +R VV+RPF GE+I A + + +G G ++V SHL+P
Sbjct: 60 PGSGLAEFTVGYRAVVWRPFKGEVIDAITQTVNPHGFFAQAGPLR-LFVSSHLMP 113
>gi|126273978|ref|XP_001387367.1| RNA polymerase II subunit [Scheffersomyces stipitis CBS 6054]
gi|126213237|gb|EAZ63344.1| RNA polymerase II subunit [Scheffersomyces stipitis CBS 6054]
Length = 173
Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 34/129 (26%), Positives = 61/129 (47%), Gaps = 13/129 (10%)
Query: 1 MFYLSKIEHTLRLPPHLLRLPLNEAIKLELENVFLDKVIANLGLCISIYDIKEIE--GGF 58
MF+L + L L P +++ ++ +L + G + + D I+ G
Sbjct: 1 MFFLKDLSLNLTLHPSYFGPQMDQYLRDKLLSDVEGTCTGQFGYIVCVLDCMNIDVGKGR 60
Query: 59 VYPGEGASTHTVKFRLVVFRPFVGEIIAAKLKESDANGLRLSLGFFED-----IYVPSHL 113
+ PG G + VK+R VV++PF GE++ A + + +GFF D ++V +HL
Sbjct: 61 IIPGSGMAEFEVKYRAVVWKPFKGEVVDAVVTTVN------KMGFFADVGPLSVFVSTHL 114
Query: 114 LPSPSRSEP 122
+PS + P
Sbjct: 115 IPSDMKFNP 123
>gi|71402510|ref|XP_804161.1| DNA-directed RNA polymerase III subunit [Trypanosoma cruzi strain
CL Brener]
gi|70866983|gb|EAN82310.1| DNA-directed RNA polymerase III subunit, putative [Trypanosoma
cruzi]
Length = 268
Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/108 (27%), Positives = 55/108 (50%), Gaps = 1/108 (0%)
Query: 12 RLPPHLLRLPLNEAIKLELENVFLDKVIANLGLCISIYDIKEIEGGFVYPGEGASTHTVK 71
+L ++ + + L ++ K++ GLC++I+DI + G V ++ T +
Sbjct: 49 QLDKQHYQVTFEDILMHRLTERYVGKIVPGCGLCVAIHDILQYTQGIVRGPSASAWLTAQ 108
Query: 72 FRLVVFRPFVGEIIAAKLKESDANGLRLSLGFFEDI-YVPSHLLPSPS 118
FRL +F P G + A + G+ L+L FF+ + +VP LL +PS
Sbjct: 109 FRLCIFAPTPGARLRATISAQTREGIFLTLEFFQFVFFVPGDLLVAPS 156
>gi|56757344|gb|AAW26843.1| unknown [Schistosoma japonicum]
Length = 157
Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 34/127 (26%), Positives = 58/127 (45%), Gaps = 4/127 (3%)
Query: 1 MFYLSKIEHTLRLPPHLLRLPLNEAIKLELENVFLDKVIANLGLCISIYDIKEIEGGFVY 60
MFY K+EH + L P L E +K +L + G I++ +I+ I G +
Sbjct: 1 MFYHIKLEHEILLHPKYFGPNLTETVKTKLFSDVEGTCSGKYGFIIAVTNIEHIGAGIIQ 60
Query: 61 PGEGASTHTVKFRLVVFRPFVGEIIAAKLKESDANGLRLSLG----FFEDIYVPSHLLPS 116
P G + + +R +V+RPF GE++ A + + G+ G F VPS++
Sbjct: 61 PNRGFVQYRIVYRAIVYRPFKGEVVDAIVTQVTKVGVFAEAGPLTIFISKYSVPSNIKFE 120
Query: 117 PSRSEPD 123
+ + D
Sbjct: 121 GAETTTD 127
>gi|336121222|ref|YP_004575997.1| DNA-directed RNA polymerase [Methanothermococcus okinawensis IH1]
gi|334855743|gb|AEH06219.1| DNA-directed RNA polymerase [Methanothermococcus okinawensis IH1]
Length = 189
Score = 54.3 bits (129), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 54/196 (27%), Positives = 97/196 (49%), Gaps = 26/196 (13%)
Query: 1 MFYLSKIEHTLRLPPHLLRLPLNEAIKLELENVFLDK----VIANLGLCISIYDIKEIEG 56
M+ L I T+R+PP++ PLNE+ L N+ + K + ++G +SI +IKEI
Sbjct: 1 MYKLITISDTVRVPPYMFGAPLNES----LHNILMKKYEGILDKDMGFILSIGEIKEIGE 56
Query: 57 GFVYPGEGASTHTVKFRLVVFRPFVGEIIAAKLKESDANGLRLSLGFFEDIYVPSHLLPS 116
G V G+GA+ H F ++ + P + E++ ++ + G+ + LG + + S ++
Sbjct: 57 GKVIYGDGAAYHPAIFDVLCYMPELYEVVEGEVVDVVEFGVFIRLGPLDGLIHISQIM-- 114
Query: 117 PSRSEPDPYGRYEVKWIWEFG-DTKYVIDGLDEIKFRVLSVNYPSIPIEQAEGSKPFAPM 175
D Y Y+ K G +T VI+ D ++ R+++V S+ + GSK
Sbjct: 115 ------DDYVSYDPKREAIIGKETGRVIEKGDRVRARIVAV---SLREAKKRGSK----- 160
Query: 176 VINGSIDYDGLGPVSW 191
I ++ GLG + W
Sbjct: 161 -IALTMRQPGLGKLEW 175
>gi|307352259|ref|YP_003893310.1| DNA-directed RNA polymerase [Methanoplanus petrolearius DSM 11571]
gi|307155492|gb|ADN34872.1| DNA-directed RNA polymerase [Methanoplanus petrolearius DSM 11571]
Length = 189
Score = 53.9 bits (128), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 31/102 (30%), Positives = 58/102 (56%)
Query: 1 MFYLSKIEHTLRLPPHLLRLPLNEAIKLELENVFLDKVIANLGLCISIYDIKEIEGGFVY 60
M+Y K+ +R+PP+ L L+ + EL+ + ++G+ I++ +I +I G +
Sbjct: 1 MYYKMKLIDKVRVPPNRLGEDLSSVVLDELQQQLEGSIDKDIGIFIAVTEIHDIGEGDII 60
Query: 61 PGEGASTHTVKFRLVVFRPFVGEIIAAKLKESDANGLRLSLG 102
PG+GA + V+F VV R + E+I ++ E+ + G +SLG
Sbjct: 61 PGDGAVYYHVEFDAVVLRLAMQEVIEGEVVETTSFGAFVSLG 102
>gi|322791340|gb|EFZ15830.1| hypothetical protein SINV_10601 [Solenopsis invicta]
Length = 169
Score = 53.9 bits (128), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 35/157 (22%), Positives = 69/157 (43%), Gaps = 6/157 (3%)
Query: 7 IEHTLRLPPHLLRLPLNEAIKLELENVFLDKVIANLGLCISIYDIKEIEGGFVYPGEGAS 66
+EH + L P L + +K +L G +++ I I G + PG+G
Sbjct: 3 LEHEILLHPRYFGPQLLDTVKQKLYTEVEGTCTGKYGFVVAVTTIDNIGAGIIQPGQGFV 62
Query: 67 THTVKFRLVVFRPFVGEIIAAKLKESDANGLRLSLGFFEDIYVPSHLLPSPSRSEPDPYG 126
+ VK++ +VFRPF GE++ A + + + G+ +G ++ H +P + P+
Sbjct: 63 VYPVKYKAIVFRPFKGEVLDAIVTQVNKVGMFAEIGPLS-CFISHHSIPEDMQFCPNVN- 120
Query: 127 RYEVKWIWEFGDTKYVIDGLDEIKFRVLSVNYPSIPI 163
++ + VI DEI+ +++ + I
Sbjct: 121 ----PACYKSKEEDVVIQADDEIRLKIVGTRVDATGI 153
>gi|440898152|gb|ELR49707.1| DNA-directed RNA polymerase II subunit RPB7, partial [Bos grunniens
mutus]
Length = 163
Score = 53.9 bits (128), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 32/117 (27%), Positives = 54/117 (46%), Gaps = 1/117 (0%)
Query: 7 IEHTLRLPPHLLRLPLNEAIKLELENVFLDKVIANLGLCISIYDIKEIEGGFVYPGEGAS 66
+EH + L P L +K +L G I++ I I G + PG G
Sbjct: 3 LEHEILLHPRYFGPNLLNTVKQKLFTEVEGTCTGKYGFVIAVTTIDNIGAGVIQPGRGFV 62
Query: 67 THTVKFRLVVFRPFVGEIIAAKLKESDANGLRLSLGFFEDIYVPSHLLPSPSRSEPD 123
+ VK++ +VFRPF GE++ A + + + GL +G ++ H +PS +P+
Sbjct: 63 LYPVKYKAIVFRPFKGEVVDAVVTQVNKVGLFTEIGPMS-CFISRHSIPSEMEFDPN 118
>gi|449018052|dbj|BAM81454.1| RNA polymerase III subunit [Cyanidioschyzon merolae strain 10D]
Length = 252
Score = 53.9 bits (128), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 42/169 (24%), Positives = 76/169 (44%), Gaps = 16/169 (9%)
Query: 1 MFYLSKIEHTLRLPPHLLRLPLNEAIKLELENVFLDKVIANLGLCISIYDIKEIEGGF-- 58
MF +E +R+ LL L +A+ + F +++ +LG+C++ I ++ G
Sbjct: 1 MFRSVLVEAAVRVESPLLAHRLEDALLHACKQRFCSRILPSLGVCLTALRICKLVDGAGK 60
Query: 59 -----VYPGE---GASTHTVKFRLVVFRPFVGEIIAAKLKESDANGLRLS-LGFFEDIYV 109
++P E G V L+++ P E+ A+++ G+RLS L F+ +V
Sbjct: 61 QLALEIWPVEVSGGGLRARVHVELLLWSPLPHELAFAQVRSCSRFGIRLSILNGFDYAFV 120
Query: 110 PSHLLPSPSRSEPDPYGRYEVKWIWEFGDTKYVIDGLDEIKFRVLSVNY 158
P +P EP Y + W W F + +VI D ++ + V Y
Sbjct: 121 PPGSMP-----EPCTYHEEQRCWSWRFNEDDFVIGEGDWVRVLIERVEY 164
>gi|302414828|ref|XP_003005246.1| DNA-directed RNA polymerase II subunit RPB7 [Verticillium
albo-atrum VaMs.102]
gi|261356315|gb|EEY18743.1| DNA-directed RNA polymerase II subunit RPB7 [Verticillium
albo-atrum VaMs.102]
Length = 177
Score = 53.9 bits (128), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 35/123 (28%), Positives = 60/123 (48%), Gaps = 2/123 (1%)
Query: 1 MFYLSKIEHTLRLPPHLLRLPLNEAIKLELENVFLDKVIANLGLCISIYDIKEIEGGFVY 60
MF+L +E + L P +++ + +L ++ A ISI D +I G +
Sbjct: 1 MFFLKNMERRVTLHPSYFGRNMHDLVTSKLLKD-VEGTFAGSYYVISIMDTFDISEGKIL 59
Query: 61 PGEGASTHTVKFRLVVFRPFVGEIIAAKLKESDANGLRLSLGFFEDIYVPSHLLPSPSRS 120
PG G + V +R VV+RPF GE + A + + G G ++V +HL+PS +
Sbjct: 60 PGSGLAEFNVGYRAVVWRPFKGETVDAVVYSVNHQGFFAQAGPLR-LFVSAHLIPSEIKW 118
Query: 121 EPD 123
+P+
Sbjct: 119 DPN 121
>gi|297618529|ref|YP_003706634.1| DNA-directed RNA polymerase [Methanococcus voltae A3]
gi|297377506|gb|ADI35661.1| DNA-directed RNA polymerase [Methanococcus voltae A3]
Length = 189
Score = 53.9 bits (128), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 46/192 (23%), Positives = 93/192 (48%), Gaps = 18/192 (9%)
Query: 1 MFYLSKIEHTLRLPPHLLRLPLNEAIKLELENVFLDKVIANLGLCISIYDIKEIEGGFVY 60
M+ + IE T+R+PP + PL + ++ L + + +LG ++I DI +I G +
Sbjct: 1 MYKILTIEDTIRIPPKMFGNPLKDNVQKVLMEKYEGILDKDLGFILAIEDIDQISEGDII 60
Query: 61 PGEGASTHTVKFRLVVFRPFVGEIIAAKLKESDANGLRLSLGFFEDIYVPSHLLPSPSRS 120
G+GA+ H F ++ + P V E+I ++ + G + LG + + S ++
Sbjct: 61 YGDGAAYHDTTFNILTYEPEVHEMIEGEIVDIVEFGAFIRLGPLDGLIHISQVM------ 114
Query: 121 EPDPYGRYEVKWIWEFG-DTKYVIDGLDEIKFRVLSVNYPSIPIEQAEGSKPFAPMVING 179
D Y ++ + G +T V++ D+++ R+++V S+ ++ GSK I
Sbjct: 115 --DDYVAFDPQREAIIGKETGKVLEKGDKVRARIVAV---SLKEDRKRGSK------IAL 163
Query: 180 SIDYDGLGPVSW 191
++ LG + W
Sbjct: 164 TMRQPALGKLEW 175
>gi|396081866|gb|AFN83480.1| DNA-directed RNA polymerase subunit E' [Encephalitozoon romaleae
SJ-2008]
Length = 177
Score = 53.9 bits (128), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 42/193 (21%), Positives = 86/193 (44%), Gaps = 18/193 (9%)
Query: 1 MFYLSKIEHTLRLPPHLLRLPLNEAIKLELENVFLDKVIANLGLCISIYDIKEIEGGFVY 60
MFY +IE +++ L + EL+ ++ +V+ + +C+ + + + V
Sbjct: 1 MFYTVEIEDRIKVSLES-SLEKEREVFEELKRKYVGRVLEDGSICVLVVRVANVHEYKV- 58
Query: 61 PGEGASTHTVKFRLVVFRPFVGEIIAAKLKESDANGLRLSLGFFEDIYVPSHLLPSPS-R 119
+ V+F ++F+ F E++ + E + +G++L + FF ++V LP + +
Sbjct: 59 -CDEFLVARVEFEALLFKFFKYEVVCGTILEQNEDGIKLGVPFFSSLFVKKGDLPDMTEK 117
Query: 120 SEPDPYGRYEVKWIWEFGDTKYVIDGLDEIKFRVLSVNYPSIPIEQAEGSKPFAPMVING 179
G ++ W+W + K ++FRVL G K + +V+
Sbjct: 118 VHVSDCGENQLAWVWIYRGNKLYFRRNACVRFRVL-------------GCKEKSSLVL-C 163
Query: 180 SIDYDGLGPVSWW 192
S+ GLGP+ WW
Sbjct: 164 SLGEAGLGPLEWW 176
>gi|343426584|emb|CBQ70113.1| probable DNA-directed RNA polymerase II chain Rpb7 [Sporisorium
reilianum SRZ2]
Length = 170
Score = 53.9 bits (128), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 32/123 (26%), Positives = 57/123 (46%), Gaps = 1/123 (0%)
Query: 1 MFYLSKIEHTLRLPPHLLRLPLNEAIKLELENVFLDKVIANLGLCISIYDIKEIEGGFVY 60
MF+L + H L P + E + +L + G I + + ++ G V
Sbjct: 1 MFFLKNLTHKTELHPSYFGPSMVEFLNQKLRDDVEGTCTGKHGYIIKVIGMVDVGQGRVI 60
Query: 61 PGEGASTHTVKFRLVVFRPFVGEIIAAKLKESDANGLRLSLGFFEDIYVPSHLLPSPSRS 120
PG G + ++ VV +PF GE++ AK+ + G +G +I+V SHL+P +
Sbjct: 61 PGSGLAEFNSTYQAVVLKPFKGEVMDAKITNVNKMGFFAEVGPL-NIFVSSHLIPIEYKF 119
Query: 121 EPD 123
+P+
Sbjct: 120 QPE 122
>gi|226468572|emb|CAX69963.1| polymerase (RNA) II (DNA directed) polypeptide G [Schistosoma
japonicum]
Length = 175
Score = 53.9 bits (128), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 34/127 (26%), Positives = 58/127 (45%), Gaps = 4/127 (3%)
Query: 1 MFYLSKIEHTLRLPPHLLRLPLNEAIKLELENVFLDKVIANLGLCISIYDIKEIEGGFVY 60
MFY K+EH + L P L E +K +L + G I++ +I+ I G +
Sbjct: 1 MFYHIKLEHEILLHPKYSGPNLTETVKTKLFSDVEGTCSGKYGFIIAVTNIEHIGAGIIQ 60
Query: 61 PGEGASTHTVKFRLVVFRPFVGEIIAAKLKESDANGLRLSLG----FFEDIYVPSHLLPS 116
P G + + +R +V+RPF GE++ A + + G+ G F VPS++
Sbjct: 61 PNRGFVQYRIVYRAIVYRPFKGEVVDAIVTQVTKVGVFAEAGPLTIFISKYSVPSNIKFE 120
Query: 117 PSRSEPD 123
+ + D
Sbjct: 121 GAETTTD 127
>gi|407844936|gb|EKG02210.1| DNA-directed RNA polymerase III subunit, putative [Trypanosoma
cruzi]
Length = 267
Score = 53.9 bits (128), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 29/101 (28%), Positives = 52/101 (51%), Gaps = 1/101 (0%)
Query: 19 RLPLNEAIKLELENVFLDKVIANLGLCISIYDIKEIEGGFVYPGEGASTHTVKFRLVVFR 78
++ + + L ++ K++ GLC++I+DI + G V ++ T FRL +F
Sbjct: 55 QVTFEDILMHRLTERYVGKIVPGCGLCVAIHDILQYTQGIVRGPSASAWLTAHFRLCIFA 114
Query: 79 PFVGEIIAAKLKESDANGLRLSLGFFEDI-YVPSHLLPSPS 118
P G + A + G+ L+L FF+ + +VP LL +PS
Sbjct: 115 PTPGARLRATISAQTREGIYLTLEFFQFVFFVPGDLLVAPS 155
>gi|346979502|gb|EGY22954.1| DNA-directed RNA polymerase II subunit RPB7 [Verticillium dahliae
VdLs.17]
Length = 171
Score = 53.9 bits (128), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 35/123 (28%), Positives = 60/123 (48%), Gaps = 2/123 (1%)
Query: 1 MFYLSKIEHTLRLPPHLLRLPLNEAIKLELENVFLDKVIANLGLCISIYDIKEIEGGFVY 60
MF+L +E + L P +++ + +L ++ A ISI D +I G +
Sbjct: 1 MFFLKNMERRVTLHPSYFGRNMHDLVTSKLLKD-VEGTFAGSYYVISIMDTFDISEGKIL 59
Query: 61 PGEGASTHTVKFRLVVFRPFVGEIIAAKLKESDANGLRLSLGFFEDIYVPSHLLPSPSRS 120
PG G + V +R VV+RPF GE + A + + G G ++V +HL+PS +
Sbjct: 60 PGSGLAEFNVGYRAVVWRPFKGETVDAVVYSVNHQGFFAQAGPLR-LFVSAHLIPSEIKW 118
Query: 121 EPD 123
+P+
Sbjct: 119 DPN 121
>gi|224056563|ref|XP_002298912.1| predicted protein [Populus trichocarpa]
gi|222846170|gb|EEE83717.1| predicted protein [Populus trichocarpa]
Length = 176
Score = 53.9 bits (128), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 37/120 (30%), Positives = 56/120 (46%), Gaps = 11/120 (9%)
Query: 1 MFYLSKIEHTLRLPPHLLRLPLNEAIKLELENVFLDKVIANLGLCISIYDIKEIEGGFVY 60
MF+ +E ++L P L E I +L G ++I I+ I G +
Sbjct: 1 MFFHIVLERNMQLHPRFFGRNLRENIVSKLMKDVEGTCSGRHGFVVAITGIENIGKGLIR 60
Query: 61 PGEGASTHTVKFRLVVFRPFVGEIIAAKLKESDANGLRLSLGFFED-----IYVPSHLLP 115
G G T VK++ VVFRPF GEI+ A + + +GFF + I+V +HL+P
Sbjct: 61 DGTGFVTFPVKYQCVVFRPFKGEILEAVVTMVN------KMGFFAEAGPVQIFVSNHLIP 114
>gi|315231773|ref|YP_004072209.1| DNA-directed RNA polymerase subunit E' [Thermococcus barophilus MP]
gi|315184801|gb|ADT84986.1| DNA-directed RNA polymerase subunit E' [Thermococcus barophilus MP]
Length = 186
Score = 53.9 bits (128), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 43/192 (22%), Positives = 93/192 (48%), Gaps = 18/192 (9%)
Query: 1 MFYLSKIEHTLRLPPHLLRLPLNEAIKLELENVFLDKVIANLGLCISIYDIKEIEGGFVY 60
M+ L ++ +R+PP + + EA K+ L + + G+ +++ D+ E+ G +
Sbjct: 1 MYKLLTVKDVVRIPPRMFTMDPKEAAKIVLRETYEGIYDKDEGVILAVLDVHEVSEGVIV 60
Query: 61 PGEGASTHTVKFRLVVFRPFVGEIIAAKLKESDANGLRLSLGFFEDIYVPSHLLPSPSRS 120
PG+GA+ H V F ++V++P + E++ ++ + G + +G + + S L+
Sbjct: 61 PGDGATYHEVVFDVLVWKPEMHEVVEGEVVDVAPYGAFIRIGPMDGLVHISQLM------ 114
Query: 121 EPDPYGRYEVKWIWEFG-DTKYVIDGLDEIKFRVLSVNYPSIPIEQAEGSKPFAPMVING 179
D Y ++ K G + KY++ DE++ R+++++ S I + + I
Sbjct: 115 --DDYVVFDEKNKQFLGKEKKYLLKLGDEVRARIIAISVKSRIIRENK---------IGL 163
Query: 180 SIDYDGLGPVSW 191
++ GLG W
Sbjct: 164 TMRQPGLGKFEW 175
>gi|145592427|ref|YP_001154429.1| DNA-directed RNA polymerase subunit E' [Pyrobaculum arsenaticum DSM
13514]
gi|379005594|ref|YP_005261266.1| DNA-directed RNA polymerase (rpoE), archaeal and eukaryotic form
[Pyrobaculum oguniense TE7]
gi|145284195|gb|ABP51777.1| DNA-directed RNA polymerase, subunit E' [Pyrobaculum arsenaticum
DSM 13514]
gi|375161047|gb|AFA40659.1| DNA-directed RNA polymerase (rpoE), archaeal and eukaryotic form
[Pyrobaculum oguniense TE7]
Length = 191
Score = 53.9 bits (128), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 46/197 (23%), Positives = 87/197 (44%), Gaps = 26/197 (13%)
Query: 2 FYLSKIEHTLRLPPHLLRLPLNEAIKLELENVFLDKVIANLGLCISIYDIKEIEGGFVYP 61
F L + E +R+PP PL E L+L+N + +V+ +G +++ + K G +
Sbjct: 3 FRLVEAEDYVRIPPSEFGKPLEETALLQLKNRYEGRVLREVGYVVAVLNTKVSREGKIVF 62
Query: 62 GEGASTHTVKFRLVVFRPFVGEIIAAKLKESDANGLRLS----LGFFEDIYV---PSHLL 114
G+G + H F ++ F P GEI+ ++ G+ + LGF I+V P+
Sbjct: 63 GDGGTYHKAVFTMLAFMPLDGEIVEGVVENVREMGMLVRIGPVLGFINKIHVMDEPNIFF 122
Query: 115 PSPSRSEPDPYGRYEVKWIWEFGDTKYVIDGLDEIKFRVLSVNYPSIPIEQAEGSKPFAP 174
+ ++S +I E K + D ++ R+ V++ + P E E
Sbjct: 123 DASTKS-----------YIGERTKRKVTVG--DIVRARITGVSF-TTPREGTE-----LL 163
Query: 175 MVINGSIDYDGLGPVSW 191
+ + ++ GLG + W
Sbjct: 164 LRVTLTMRMPGLGKLEW 180
>gi|290975310|ref|XP_002670386.1| predicted protein [Naegleria gruberi]
gi|284083944|gb|EFC37642.1| predicted protein [Naegleria gruberi]
Length = 161
Score = 53.5 bits (127), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 30/115 (26%), Positives = 57/115 (49%), Gaps = 1/115 (0%)
Query: 1 MFYLSKIEHTLRLPPHLLRLPLNEAIKLELENVFLDKVIANLGLCISIYDIKEIEGGFVY 60
MF+L ++ +RL P L ++ L+N + G +S+ +I +I G +
Sbjct: 1 MFFLVDLDKNIRLHPKFFGPDLTRTLRARLQNDVEGQCTGRDGYIVSVTEITKIGQGKIG 60
Query: 61 PGEGASTHTVKFRLVVFRPFVGEIIAAKLKESDANGLRLSLGFFEDIYVPSHLLP 115
G +T + ++ +VF+PF GE+ A + + G S+G +++V SH +P
Sbjct: 61 ESSGYATFPINYKAIVFKPFKGEVCDAVVYKVTPVGFFASVGPL-NVFVSSHAVP 114
>gi|190346607|gb|EDK38733.2| hypothetical protein PGUG_02831 [Meyerozyma guilliermondii ATCC
6260]
Length = 173
Score = 53.5 bits (127), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 34/129 (26%), Positives = 60/129 (46%), Gaps = 13/129 (10%)
Query: 1 MFYLSKIEHTLRLPPHLLRLPLNEAIKLELENVFLDKVIANLGLCISIYDIKEIE--GGF 58
MF+L + L L P ++ ++ +L + G + + D I+ G
Sbjct: 1 MFFLKDLSLNLTLHPSYFGPQMDSYLRSKLLSDVEGTCTGQFGYIVCVLDCMNIDVGKGK 60
Query: 59 VYPGEGASTHTVKFRLVVFRPFVGEIIAAKLKESDANGLRLSLGFFED-----IYVPSHL 113
+ PG G + VK+R VV++PF GE++ A + + +GFF D ++V +HL
Sbjct: 61 IIPGSGMAEFEVKYRAVVWKPFKGEVVDAVVTTVN------KMGFFADVGPLSVFVSTHL 114
Query: 114 LPSPSRSEP 122
+PS + P
Sbjct: 115 IPSDMKFNP 123
>gi|320101521|ref|YP_004177113.1| DNA-directed RNA polymerase subunit E' [Desulfurococcus mucosus DSM
2162]
gi|319753873|gb|ADV65631.1| DNA-directed RNA polymerase, subunit E' [Desulfurococcus mucosus
DSM 2162]
Length = 189
Score = 53.5 bits (127), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 30/113 (26%), Positives = 55/113 (48%), Gaps = 8/113 (7%)
Query: 1 MFYLSKIEHTLRLPPHLLRLPLNEAIKLELENVFLDKVIA--------NLGLCISIYDIK 52
M+ L KI +R+PP P+ EL + + + + LG+ ++I D
Sbjct: 1 MYSLIKIRDVVRIPPSKFGRPVKNVALEELRSRYEGAITSIETPRGESKLGIVVTIVDAN 60
Query: 53 EIEGGFVYPGEGASTHTVKFRLVVFRPFVGEIIAAKLKESDANGLRLSLGFFE 105
E G + PG+GA+ H V+ +VF PF+ E++ + +G+ ++LG +
Sbjct: 61 VDENGRILPGDGATYHDVEMYALVFTPFIKEVVEGEAVTVTKSGIYVNLGVLD 113
>gi|126180182|ref|YP_001048147.1| DNA-directed RNA polymerase subunit E' [Methanoculleus marisnigri
JR1]
gi|125862976|gb|ABN58165.1| DNA-directed RNA polymerase, subunit E' [Methanoculleus marisnigri
JR1]
Length = 188
Score = 53.5 bits (127), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 48/192 (25%), Positives = 88/192 (45%), Gaps = 18/192 (9%)
Query: 1 MFYLSKIEHTLRLPPHLLRLPLNEAIKLELENVFLDKVIANLGLCISIYDIKEIEGGFVY 60
M+Y +E +R+PPH L L + I L+ + +G+ I++ +I + G +
Sbjct: 1 MYYKMTLEDKVRVPPHRLGEDLEKVILNVLQEQLEGSIAKEIGIFIAVTNILNVGEGELI 60
Query: 61 PGEGASTHTVKFRLVVFRPFVGEIIAAKLKESDANGLRLSLGFFEDIYVPSHLLPSPSRS 120
PG+GA + V+F V R + E+I ++ E+ + G +SLG + + S +
Sbjct: 61 PGDGAVYYDVRFEAAVLRLALQEVIEGQVVETTSFGAFVSLGPIDAMLHVSQI------- 113
Query: 121 EPDPYGRYEVK-WIWEFGDTKYVIDGLDEIKFRVLSVNYPSIPIEQAEGSKPFAPMVING 179
D Y Y+ K D+K I D ++ R++++ S+ + SK I
Sbjct: 114 -SDEYINYDEKNGRLVCQDSKRAITVGDGVRARIVAL---SLNEREPRESK------IGL 163
Query: 180 SIDYDGLGPVSW 191
++ GLG +W
Sbjct: 164 TMRQSGLGTTTW 175
>gi|156050367|ref|XP_001591145.1| hypothetical protein SS1G_07770 [Sclerotinia sclerotiorum 1980]
gi|154692171|gb|EDN91909.1| hypothetical protein SS1G_07770 [Sclerotinia sclerotiorum 1980
UF-70]
Length = 167
Score = 53.5 bits (127), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 37/120 (30%), Positives = 59/120 (49%), Gaps = 12/120 (10%)
Query: 1 MFYLSKIEHTLRLPPHLLRLPLNEAIKLELENVFLDKVIANLGLCISIYDIKEIEGGFVY 60
MF+L +E + L P ++E + +L ++ L I+I D I G +
Sbjct: 1 MFFLYNLERQVTLHPSYFGRNMHELVTGKLLKD-VEGTCTGLYYIITIMDTFNISEGRIL 59
Query: 61 PGEGASTHTVKFRLVVFRPFVGEIIAAKLKESDANGLRLSLGFFED-----IYVPSHLLP 115
PG G + TV +R VV+RPF GE + A + +A +GFF D ++V +HL+P
Sbjct: 60 PGSGLAEFTVGYRAVVWRPFKGETVDAIVTSVNA------VGFFADAGPLPLFVSAHLIP 113
>gi|352681821|ref|YP_004892345.1| DNA-directed RNA polymerase subunit E' [Thermoproteus tenax Kra 1]
gi|350274620|emb|CCC81265.1| DNA-directed RNA polymerase, subunit E' [Thermoproteus tenax Kra 1]
Length = 189
Score = 53.5 bits (127), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 47/197 (23%), Positives = 87/197 (44%), Gaps = 26/197 (13%)
Query: 2 FYLSKIEHTLRLPPHLLRLPLNEAIKLELENVFLDKVIANLGLCISIYDIKEIEGGFVYP 61
F L + E +R+PP PL + +L + + K +LG +++ D K G +
Sbjct: 3 FRLVEAEDYIRVPPSDFNKPLEDVALGQLRSKYEGKSFRDLGYVVAVLDAKVNREGVIIF 62
Query: 62 GEGASTHTVKFRLVVFRPFVGEIIAAKLKESDANGLRLS----LGFFEDIYV---PSHLL 114
G+GA+ H F ++ F P GE++ ++ + G+ + LGF I++ P+ L
Sbjct: 63 GDGATYHKAIFHILTFMPLDGEVVHGIVESAREVGVMVRIGPVLGFINKIHLMDEPNVLF 122
Query: 115 PSPSRSEPDPYGRYEVKWIWEFGDTKYVIDGLDEIKFRVLSVNYPSIPIEQAEGSKPFAP 174
+ ++S +I E K I D ++ R+ ++Y + Q EG
Sbjct: 123 DASTKS-----------FIGERTKKKLSIG--DVVRARITGISY----VAQKEGVD--LA 163
Query: 175 MVINGSIDYDGLGPVSW 191
+ I ++ GLG + W
Sbjct: 164 LRITMTMRMPGLGKLEW 180
>gi|443898054|dbj|GAC75392.1| DNA-directed RNA polymerase subunit E' [Pseudozyma antarctica T-34]
Length = 170
Score = 53.5 bits (127), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 32/123 (26%), Positives = 57/123 (46%), Gaps = 1/123 (0%)
Query: 1 MFYLSKIEHTLRLPPHLLRLPLNEAIKLELENVFLDKVIANLGLCISIYDIKEIEGGFVY 60
MF+L + H L P + E + +L + G I + + ++ G V
Sbjct: 1 MFFLKYLTHKTELHPSYFGPSMVEFLNQKLRDDVEGTCTGKYGYIIKVVGMIDVGQGKVI 60
Query: 61 PGEGASTHTVKFRLVVFRPFVGEIIAAKLKESDANGLRLSLGFFEDIYVPSHLLPSPSRS 120
PG G + ++ VV +PF GE++ AK+ + G +G +I+V SHL+P +
Sbjct: 61 PGSGLAEFNSTYQAVVLKPFKGEVMDAKITNVNKMGFFAEVGPL-NIFVSSHLIPIEYKF 119
Query: 121 EPD 123
+P+
Sbjct: 120 QPE 122
>gi|154295091|ref|XP_001547983.1| hypothetical protein BC1G_13674 [Botryotinia fuckeliana B05.10]
gi|347831716|emb|CCD47413.1| similar to DNA-directed RNA polymerase II subunit rpb7 [Botryotinia
fuckeliana]
Length = 172
Score = 53.5 bits (127), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 37/120 (30%), Positives = 59/120 (49%), Gaps = 12/120 (10%)
Query: 1 MFYLSKIEHTLRLPPHLLRLPLNEAIKLELENVFLDKVIANLGLCISIYDIKEIEGGFVY 60
MF+L +E + L P ++E + +L ++ L I+I D I G +
Sbjct: 1 MFFLYNLERQVTLHPSYFGRNMHELVTGKLLKD-VEGTCTGLYYIITIMDTFNISEGRIL 59
Query: 61 PGEGASTHTVKFRLVVFRPFVGEIIAAKLKESDANGLRLSLGFFED-----IYVPSHLLP 115
PG G + TV +R VV+RPF GE + A + +A +GFF D ++V +HL+P
Sbjct: 60 PGSGLAEFTVGYRAVVWRPFKGETVDAIVTSVNA------VGFFADAGPLPLFVSAHLIP 113
>gi|116207108|ref|XP_001229363.1| conserved hypothetical protein [Chaetomium globosum CBS 148.51]
gi|88183444|gb|EAQ90912.1| conserved hypothetical protein [Chaetomium globosum CBS 148.51]
Length = 202
Score = 53.5 bits (127), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 35/115 (30%), Positives = 58/115 (50%), Gaps = 2/115 (1%)
Query: 1 MFYLSKIEHTLRLPPHLLRLPLNEAIKLELENVFLDKVIANLGLCISIYDIKEIEGGFVY 60
MF+L +E + L P ++E + +L ++ A I+I D ++ G +
Sbjct: 1 MFFLHNLERRVTLHPSYFGRNMHELVTTKLVKD-VEGTCAGDYYIIAIMDTFDVSEGRIL 59
Query: 61 PGEGASTHTVKFRLVVFRPFVGEIIAAKLKESDANGLRLSLGFFEDIYVPSHLLP 115
PG G + TV +R VV+RPF GE+I A + + +G G ++V SHL+P
Sbjct: 60 PGSGLAEFTVGYRAVVWRPFKGEVIDAITQTVNPHGFFAQAGPLR-LFVSSHLMP 113
>gi|71022503|ref|XP_761481.1| hypothetical protein UM05334.1 [Ustilago maydis 521]
gi|46101350|gb|EAK86583.1| hypothetical protein UM05334.1 [Ustilago maydis 521]
Length = 170
Score = 53.5 bits (127), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 32/123 (26%), Positives = 57/123 (46%), Gaps = 1/123 (0%)
Query: 1 MFYLSKIEHTLRLPPHLLRLPLNEAIKLELENVFLDKVIANLGLCISIYDIKEIEGGFVY 60
MF+L + H L P + E + +L + G I + + ++ G V
Sbjct: 1 MFFLKHLTHKTELHPSYFGPSMVEFLNQKLRDDVEGTCTGKHGYIIKVIGLVDVGQGKVI 60
Query: 61 PGEGASTHTVKFRLVVFRPFVGEIIAAKLKESDANGLRLSLGFFEDIYVPSHLLPSPSRS 120
PG G + ++ VV +PF GE++ AK+ + G +G +I+V SHL+P +
Sbjct: 61 PGSGLAEFNSTYQAVVLKPFKGEVMDAKITNVNKMGFFAEVGPL-NIFVSSHLIPIEYKF 119
Query: 121 EPD 123
+P+
Sbjct: 120 QPE 122
>gi|406694604|gb|EKC97928.1| hypothetical protein A1Q2_07725 [Trichosporon asahii var. asahii
CBS 8904]
Length = 171
Score = 53.1 bits (126), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 29/123 (23%), Positives = 59/123 (47%), Gaps = 1/123 (0%)
Query: 1 MFYLSKIEHTLRLPPHLLRLPLNEAIKLELENVFLDKVIANLGLCISIYDIKEIEGGFVY 60
MF++ ++ HT+ L P L + +K +L G IS+ ++ +I G +
Sbjct: 1 MFFIRELTHTILLHPSYFGAQLEDYLKQKLYEDVEGTCSGKHGYIISVVNVTDIGEGKIM 60
Query: 61 PGEGASTHTVKFRLVVFRPFVGEIIAAKLKESDANGLRLSLGFFEDIYVPSHLLPSPSRS 120
P G + + +V +PF GE++ K+ + G +G + ++V SHL+ + +
Sbjct: 61 PSTGQARFKCSYTAIVMKPFKGEVVDGKVSNVNKMGFFAHVGPLQ-VFVSSHLVHADMKF 119
Query: 121 EPD 123
+P+
Sbjct: 120 DPN 122
>gi|402086572|gb|EJT81470.1| hypothetical protein GGTG_01448 [Gaeumannomyces graminis var.
tritici R3-111a-1]
Length = 170
Score = 53.1 bits (126), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 35/123 (28%), Positives = 57/123 (46%), Gaps = 2/123 (1%)
Query: 1 MFYLSKIEHTLRLPPHLLRLPLNEAIKLELENVFLDKVIANLGLCISIYDIKEIEGGFVY 60
MF+L +E + L P + E + L N ISI D +I G +
Sbjct: 1 MFFLYNLERRVTLHPSYFGKNMQELVTTRLLQDVEGSCQGNY-YIISIMDTFDISPGKIL 59
Query: 61 PGEGASTHTVKFRLVVFRPFVGEIIAAKLKESDANGLRLSLGFFEDIYVPSHLLPSPSRS 120
PG G + TV +R VV+RPF GE + A + + +G + G ++V H++P +
Sbjct: 60 PGNGLAEFTVGYRAVVWRPFKGETVDAIVDSVNPHGFFANAGPLR-LFVSEHMIPHHVKY 118
Query: 121 EPD 123
+P+
Sbjct: 119 DPN 121
>gi|46108676|ref|XP_381396.1| hypothetical protein FG01220.1 [Gibberella zeae PH-1]
Length = 248
Score = 53.1 bits (126), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 40/129 (31%), Positives = 66/129 (51%), Gaps = 8/129 (6%)
Query: 1 MFYLSKIEHTLRLPPHLLRLPLNEAIKLELENVFLDKVIANLGLCISIYDIKEIEGGFVY 60
MF+L +E + L P + ++E + +L ++ A ISI D EI G +
Sbjct: 1 MFFLYNLERKVTLHPSFMGRNMHELVTGKLLKD-VEGTCAGSYFIISIMDAFEISEGRIL 59
Query: 61 PGEGASTHTVKFRLVVFRPFVGEIIAAKLKESDANGLRLS-LGFFED-----IYVPSHLL 114
PG G + TV +R VV+RPF GE + L + DA ++ GFF ++V +HL+
Sbjct: 60 PGLGMAEFTVGYRAVVWRPFKGE-TESDLTQVDAVVHSINPQGFFAHAGPLRLFVSAHLI 118
Query: 115 PSPSRSEPD 123
P+ + +P+
Sbjct: 119 PNDVKWDPN 127
>gi|429966473|gb|ELA48470.1| hypothetical protein VCUG_00079 [Vavraia culicis 'floridensis']
Length = 175
Score = 53.1 bits (126), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 37/165 (22%), Positives = 73/165 (44%), Gaps = 27/165 (16%)
Query: 34 FLDKVIANLGLCISIYDIKEIEGGFVYPGEGASTHTVKFRLVVFRPFVGEIIAAKLKESD 93
+ +++I N G+ I + +IK+I G + EG ++F L+ ++ F EI+ A + + D
Sbjct: 32 YTNRIIPNEGIGIRVKEIKKINGKELV--EGCYIIYLEFILITYKLFKDEIVEATIIKQD 89
Query: 94 ANGLRLSLGFFEDIYVPSHLLPSP------SRSEPDPYGRYEVKWIWEFGDTKYVIDGLD 147
NG+ L I+V L P + P+ + + W W + + +
Sbjct: 90 ENGIYLMHSIVNTIHVKI-LFPGTVKKYFVMKDSPEKH----MCWCWTYKNDNFYFKNGQ 144
Query: 148 EIKFRVLSVNYPSIPIEQAEGSKPFAPMVINGSIDYDGLGPVSWW 192
++ +++ V+Y P ++ +D +GLGP WW
Sbjct: 145 FVRCKIVHVSY--------------TPFLVEARMDDNGLGPKEWW 175
>gi|20094887|ref|NP_614734.1| DNA-directed RNA polymerase subunit E' [Methanopyrus kandleri
AV19]
gi|19888120|gb|AAM02664.1| DNA-directed RNA polymerase subunit E' [Methanopyrus kandleri
AV19]
Length = 183
Score = 53.1 bits (126), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 48/85 (56%), Gaps = 6/85 (7%)
Query: 1 MFYLSKIEHTLRLPPHLLRLPLNEAIKLELENVFLDKVIAN------LGLCISIYDIKEI 54
M+ L ++E T+R+PP + +A+ LEN K+ +G + + +I ++
Sbjct: 1 MYELVELETTVRIPPTQFTSDVEDAVLKALENDVEGKLFREDDTGEPIGFVVFVDEILDV 60
Query: 55 EGGFVYPGEGASTHTVKFRLVVFRP 79
E ++PG+GAS H V+FR +VFRP
Sbjct: 61 ENEGIFPGDGASYHRVRFRALVFRP 85
>gi|323309699|gb|EGA62907.1| Rpb7p [Saccharomyces cerevisiae FostersO]
gi|323338133|gb|EGA79367.1| Rpb7p [Saccharomyces cerevisiae Vin13]
gi|392300523|gb|EIW11614.1| Rpb7p [Saccharomyces cerevisiae CEN.PK113-7D]
Length = 150
Score = 53.1 bits (126), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 43/73 (58%), Gaps = 1/73 (1%)
Query: 44 LCISIYDIKEIEGGFVYPGEGASTHTVKFRLVVFRPFVGEIIAAKLKESDANGLRLSLGF 103
LC+ YD +I+ G + P +G++ VK+R VVF+PF GE++ + +G + +G
Sbjct: 25 LCVLDYDNIDIQRGRILPTDGSAEFNVKYRAVVFKPFKGEVVDGTVVSCSQHGFEVQVGP 84
Query: 104 FEDIYVPSHLLPS 116
+ ++V HL+P
Sbjct: 85 MK-VFVTKHLMPQ 96
>gi|448117713|ref|XP_004203323.1| Piso0_000929 [Millerozyma farinosa CBS 7064]
gi|448120153|ref|XP_004203906.1| Piso0_000929 [Millerozyma farinosa CBS 7064]
gi|359384191|emb|CCE78895.1| Piso0_000929 [Millerozyma farinosa CBS 7064]
gi|359384774|emb|CCE78309.1| Piso0_000929 [Millerozyma farinosa CBS 7064]
Length = 173
Score = 53.1 bits (126), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 33/129 (25%), Positives = 60/129 (46%), Gaps = 13/129 (10%)
Query: 1 MFYLSKIEHTLRLPPHLLRLPLNEAIKLELENVFLDKVIANLGLCISIYDIKEIE--GGF 58
MF+L + L L P +++ ++ +L + G + + D I+ G
Sbjct: 1 MFFLKDLSLNLTLHPSYFGPQMDQYLRDKLLSDVEGTCTGQFGYIVCVLDCMNIDVGKGT 60
Query: 59 VYPGEGASTHTVKFRLVVFRPFVGEIIAAKLKESDANGLRLSLGFFED-----IYVPSHL 113
+ PG G + VK+R VV++PF GE++ + + +GFF D ++V +HL
Sbjct: 61 IIPGTGMAEFEVKYRAVVWKPFKGEVVDGVVTTVN------KMGFFADVGPLSVFVSTHL 114
Query: 114 LPSPSRSEP 122
+PS + P
Sbjct: 115 IPSDMKFNP 123
>gi|365761292|gb|EHN02956.1| Rpb7p [Saccharomyces cerevisiae x Saccharomyces kudriavzevii VIN7]
Length = 150
Score = 53.1 bits (126), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 43/73 (58%), Gaps = 1/73 (1%)
Query: 44 LCISIYDIKEIEGGFVYPGEGASTHTVKFRLVVFRPFVGEIIAAKLKESDANGLRLSLGF 103
LC+ YD +I+ G + P +G++ VK+R VVF+PF GE++ + +G + +G
Sbjct: 25 LCVLDYDNIDIQRGRILPTDGSAEFNVKYRAVVFKPFKGEVVDGTVVSCSQHGFEVQVGP 84
Query: 104 FEDIYVPSHLLPS 116
+ ++V HL+P
Sbjct: 85 MK-VFVTKHLMPQ 96
>gi|288560738|ref|YP_003424224.1| DNA-directed RNA polymerase subunit E' RpoE1 [Methanobrevibacter
ruminantium M1]
gi|288543448|gb|ADC47332.1| DNA-directed RNA polymerase subunit E' RpoE1 [Methanobrevibacter
ruminantium M1]
Length = 189
Score = 53.1 bits (126), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 47/86 (54%)
Query: 4 LSKIEHTLRLPPHLLRLPLNEAIKLELENVFLDKVIANLGLCISIYDIKEIEGGFVYPGE 63
++ IE T+R+PPH PL + L + ++ NLGL + + I+E+ G + G+
Sbjct: 1 MTTIEGTVRIPPHRFGEPLEDVAIETLNESYNGQLDKNLGLIVGVTSIEEMGEGVLIMGD 60
Query: 64 GASTHTVKFRLVVFRPFVGEIIAAKL 89
GA+ H V F + F+P E++ ++
Sbjct: 61 GAAYHNVIFNAIFFKPEQQEVVEGEV 86
>gi|452848074|gb|EME50006.1| hypothetical protein DOTSEDRAFT_122159 [Dothistroma septosporum
NZE10]
Length = 167
Score = 53.1 bits (126), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 31/116 (26%), Positives = 60/116 (51%), Gaps = 2/116 (1%)
Query: 1 MFYLSKIEHTLRLPPHLLRLPLNEAIKLELENVFLDKVIANLGLCISIYDIKEIEGGFVY 60
MF+++ E L + P ++ I+ +L + L+ I + I I +I E+ +
Sbjct: 1 MFFIAHRERELSMHPSFFDSGASDKIREQLHSD-LEGTIEGTLMIIQIIEIDEVSEPMLV 59
Query: 61 PGEGASTHTVKFRLVVFRPFVGEIIAAKLKESDANGLRLSLGFFEDIYVPSHLLPS 116
PG G + +TV +R +V+RPF GE++ + +NG + +G ++V ++PS
Sbjct: 60 PGTGMAKYTVSYRALVWRPFRGEVVDGLVTSVVSNGFFVEVGGM-SVFVARAMIPS 114
>gi|20092492|ref|NP_618567.1| DNA-directed RNA polymerase subunit E' [Methanosarcina acetivorans
C2A]
gi|19917756|gb|AAM07047.1| DNA-directed RNA polymerase, subunit E [Methanosarcina acetivorans
C2A]
Length = 194
Score = 53.1 bits (126), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 32/102 (31%), Positives = 55/102 (53%)
Query: 1 MFYLSKIEHTLRLPPHLLRLPLNEAIKLELENVFLDKVIANLGLCISIYDIKEIEGGFVY 60
M+ L K+ T+R+PP LL + IK L +V LG +++Y+I E+ G +
Sbjct: 1 MYKLMKLIDTVRIPPTLLGEEIMPTIKNALREKLEGQVDKKLGSLVAVYNIDEVGEGHIL 60
Query: 61 PGEGASTHTVKFRLVVFRPFVGEIIAAKLKESDANGLRLSLG 102
G+GA + V F ++F P + EII ++ E+ G+ + +G
Sbjct: 61 VGDGAVYYDVTFEAIMFIPELQEIIEGEVVEAVGFGVFVGMG 102
>gi|14591652|ref|NP_143736.1| DNA-directed RNA polymerase subunit E' [Pyrococcus horikoshii OT3]
gi|3258350|dbj|BAA31033.1| 188aa long hypothetical DNA-directed RNA polymerase subunit E
[Pyrococcus horikoshii OT3]
Length = 188
Score = 53.1 bits (126), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 44/192 (22%), Positives = 89/192 (46%), Gaps = 18/192 (9%)
Query: 1 MFYLSKIEHTLRLPPHLLRLPLNEAIKLELENVFLDKVIANLGLCISIYDIKEIEGGFVY 60
M+ + ++ +R+PP + + EA L L + + + G+ +SI ++KE+ G +
Sbjct: 1 MYKIVTVKDVVRIPPRMFTMDPKEAAMLVLRDTYEGTYDRDEGVILSIVEVKEVGDGIIV 60
Query: 61 PGEGASTHTVKFRLVVFRPFVGEIIAAKLKESDANGLRLSLGFFEDIYVPSHLLPSPSRS 120
PG+GA+ H V F ++V+ P E++ + + G + +G + + S L+
Sbjct: 61 PGDGATYHEVVFDVLVWEPKRDEVVEGTVVDVVPFGAFIRIGPMDGLVHISQLM------ 114
Query: 121 EPDPYGRYEVKWIWEFG-DTKYVIDGLDEIKFRVLSVNYPSIPIEQAEGSKPFAPMVING 179
D Y Y+ + G + KY++ D ++ R+++V+ S I + I
Sbjct: 115 --DDYVVYDERNKQFVGKEKKYLLKIGDAVRARIITVSPKSRVIRENR---------IGL 163
Query: 180 SIDYDGLGPVSW 191
++ GLG W
Sbjct: 164 TMRQPGLGKFEW 175
>gi|332158540|ref|YP_004423819.1| DNA-directed RNA polymerase subunit E' [Pyrococcus sp. NA2]
gi|331034003|gb|AEC51815.1| DNA-directed RNA polymerase subunit E' [Pyrococcus sp. NA2]
Length = 188
Score = 53.1 bits (126), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 39/166 (23%), Positives = 82/166 (49%), Gaps = 9/166 (5%)
Query: 1 MFYLSKIEHTLRLPPHLLRLPLNEAIKLELENVFLDKVIANLGLCISIYDIKEIEGGFVY 60
M+ + ++ +R+PP + + EA L ++ K + G+ +SI ++KE+ G +
Sbjct: 1 MYKIVTVKDVVRIPPRMFTMDPKEAAMTVLREIYEGKYDRDEGVILSIVEVKEVGDGIIV 60
Query: 61 PGEGASTHTVKFRLVVFRPFVGEIIAAKLKESDANGLRLSLGFFEDIYVPSHLLPSPSRS 120
PG+GA+ H V F ++V+ P E++ + + G + +G + + S L+
Sbjct: 61 PGDGATYHEVTFDVLVWEPKQHEVVEGTVVDVVPFGAFVRIGPMDGLVHISQLM------ 114
Query: 121 EPDPYGRYEVKWIWEFG-DTKYVIDGLDEIKFRVLSVNYPSIPIEQ 165
D Y Y+ + G + KY++ D ++ R+++V+ S I +
Sbjct: 115 --DDYVVYDERNKQFVGKEKKYLLKIGDAVRARIITVSPKSRVIRE 158
>gi|407929414|gb|EKG22244.1| hypothetical protein MPH_00423 [Macrophomina phaseolina MS6]
Length = 171
Score = 53.1 bits (126), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 36/116 (31%), Positives = 61/116 (52%), Gaps = 2/116 (1%)
Query: 1 MFYLSKIEHTLRLPPHLLRLPLNEAIKLELENVFLDKVIANLGLCISIYDIKEIEGGFVY 60
MF+L ++E T+ L P L ++E I+ L+ I N I + D ++ G V
Sbjct: 1 MFFLHELERTITLHPSFLGPNVHEYIEDRLKQDVEGIQIENY-YIICVMDSQDKSEGRVL 59
Query: 61 PGEGASTHTVKFRLVVFRPFVGEIIAAKLKESDANGLRLSLGFFEDIYVPSHLLPS 116
PG G +TV F+ +V+RPF GEI+ + +G + +G +++V S ++PS
Sbjct: 60 PGTGYIEYTVHFKAIVWRPFKGEILDGIVSAVVDSGFFVDVGPL-NVFVASSMIPS 114
>gi|84489433|ref|YP_447665.1| DNA-directed RNA polymerase subunit E' [Methanosphaera stadtmanae
DSM 3091]
gi|84372752|gb|ABC57022.1| RpoE1 [Methanosphaera stadtmanae DSM 3091]
Length = 185
Score = 52.8 bits (125), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 25/91 (27%), Positives = 52/91 (57%)
Query: 1 MFYLSKIEHTLRLPPHLLRLPLNEAIKLELENVFLDKVIANLGLCISIYDIKEIEGGFVY 60
M+ ++ IE T+R+PP++ +P E L ++ K+ LG+ + + ++ + G V
Sbjct: 1 MYEIATIEDTVRVPPNMFDMPFEEVTATILNKQYVGKLDKKLGILVMVTEVIDHSEGKVV 60
Query: 61 PGEGASTHTVKFRLVVFRPFVGEIIAAKLKE 91
G+GA+ + VKF + ++P + E+I ++ E
Sbjct: 61 IGDGAAFYHVKFNALFYKPMLHEVIDGEVIE 91
>gi|162312460|ref|XP_001713072.1| DNA-directed RNA polymerase complex II subunit Rpb7
[Schizosaccharomyces pombe 972h-]
gi|3334317|sp|O14459.1|RPB7_SCHPO RecName: Full=DNA-directed RNA polymerase II subunit rpb7;
Short=RNA polymerase II subunit B7
gi|256599721|pdb|3H0G|G Chain G, Rna Polymerase Ii From Schizosaccharomyces Pombe
gi|256599733|pdb|3H0G|S Chain S, Rna Polymerase Ii From Schizosaccharomyces Pombe
gi|2529241|dbj|BAA22802.1| RNA polymerase II subunit Rpb7 [Schizosaccharomyces pombe]
gi|2529245|dbj|BAA22804.1| RNA polymerase II subunit Rpb7 [Schizosaccharomyces pombe]
gi|2708528|gb|AAB92516.1| Rpb7 [Schizosaccharomyces pombe]
gi|4091821|gb|AAC99317.1| RNA polymerase II subunit Rpb7 [Schizosaccharomyces pombe]
gi|159883968|emb|CAA20136.2| DNA-directed RNA polymerase complex II subunit Rpb7
[Schizosaccharomyces pombe]
Length = 172
Score = 52.8 bits (125), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 34/123 (27%), Positives = 62/123 (50%), Gaps = 3/123 (2%)
Query: 2 FYLSKIEHTLRLPPHLLRLPLNEAIKLELENVFLDKVIANLGLCISIYDIK--EIEGGFV 59
F+L ++ T+ L P + + +K +L G I + D +I+ G V
Sbjct: 3 FFLKELSLTISLHPSYFGPRMQDYLKAKLLADVEGTCSGQYGYIICVLDSNTIDIDKGRV 62
Query: 60 YPGEGASTHTVKFRLVVFRPFVGEIIAAKLKESDANGLRLSLGFFEDIYVPSHLLPSPSR 119
PG+G + VK+R V++RPF GE++ A + + G ++G +++V SHL+P +
Sbjct: 63 VPGQGFAEFEVKYRAVLWRPFRGEVVDAIVTTVNKMGFFANIGPL-NVFVSSHLVPPDMK 121
Query: 120 SEP 122
+P
Sbjct: 122 FDP 124
>gi|321258118|ref|XP_003193819.1| hypothetical protein CGB_D7770C [Cryptococcus gattii WM276]
gi|317460289|gb|ADV22032.1| Conserved hypothetical protein [Cryptococcus gattii WM276]
Length = 172
Score = 52.8 bits (125), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 31/122 (25%), Positives = 57/122 (46%), Gaps = 1/122 (0%)
Query: 1 MFYLSKIEHTLRLPPHLLRLPLNEAIKLELENVFLDKVIANLGLCISIYDIKEIEGGFVY 60
MF+L ++ HT+ L P L + ++ +L G IS+ I +I G +
Sbjct: 1 MFFLRELTHTILLHPSYFGAQLEDYLRQKLYEDVEGTCSGKHGYIISVITITDIGEGKII 60
Query: 61 PGEGASTHTVKFRLVVFRPFVGEIIAAKLKESDANGLRLSLGFFEDIYVPSHLLPSPSRS 120
P G + ++ +V +PF GE++ AK+ + G +G + ++V HL S +
Sbjct: 61 PSTGQAKFKTRYTAIVMKPFKGEVVDAKVANVNKMGFFAMVGPLQ-VFVSCHLTHSDMKF 119
Query: 121 EP 122
+P
Sbjct: 120 DP 121
>gi|374629103|ref|ZP_09701488.1| DNA-directed RNA polymerase, subunit E' [Methanoplanus limicola DSM
2279]
gi|373907216|gb|EHQ35320.1| DNA-directed RNA polymerase, subunit E' [Methanoplanus limicola DSM
2279]
Length = 190
Score = 52.8 bits (125), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 32/102 (31%), Positives = 56/102 (54%)
Query: 1 MFYLSKIEHTLRLPPHLLRLPLNEAIKLELENVFLDKVIANLGLCISIYDIKEIEGGFVY 60
M++ +E +R+PP L L + EL+ + ++G+ I++ +IKEI G +
Sbjct: 1 MYFRMTLEDKVRVPPDRLGEDLEIVVMDELQKQLEGSIDKDIGIFIAVTEIKEIGEGDII 60
Query: 61 PGEGASTHTVKFRLVVFRPFVGEIIAAKLKESDANGLRLSLG 102
P +GA ++V F VV R + EII ++ E+ + G +SLG
Sbjct: 61 PSDGAVYYSVIFDSVVMRLSMQEIIEGEVVETTSFGAFVSLG 102
>gi|344304448|gb|EGW34680.1| RNA polymerase II subunit [Spathaspora passalidarum NRRL Y-27907]
Length = 173
Score = 52.8 bits (125), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 33/129 (25%), Positives = 60/129 (46%), Gaps = 13/129 (10%)
Query: 1 MFYLSKIEHTLRLPPHLLRLPLNEAIKLELENVFLDKVIANLGLCISIYDIKEIE--GGF 58
MF+L + L L P +++ ++ +L + G + + D I+ G
Sbjct: 1 MFFLKDLSLNLTLHPSYFGPQMDQYLRDKLLSDVEGTCTGQFGYIVCVLDCMNIDVGKGR 60
Query: 59 VYPGEGASTHTVKFRLVVFRPFVGEIIAAKLKESDANGLRLSLGFFED-----IYVPSHL 113
+ PG G + VK+R VV++PF GE++ + + +GFF D ++V +HL
Sbjct: 61 IIPGSGMAEFEVKYRAVVWKPFKGEVVDGVVTTVN------KMGFFADVGPLSVFVSTHL 114
Query: 114 LPSPSRSEP 122
+PS + P
Sbjct: 115 IPSDMKFNP 123
>gi|406866054|gb|EKD19094.1| RNA polymerase Rpb7-like domain-containing protein [Marssonina
brunnea f. sp. 'multigermtubi' MB_m1]
Length = 172
Score = 52.8 bits (125), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 37/128 (28%), Positives = 61/128 (47%), Gaps = 12/128 (9%)
Query: 1 MFYLSKIEHTLRLPPHLLRLPLNEAIKLELENVFLDKVIANLGLCISIYDIKEIEGGFVY 60
MF+L +E + L P ++E + +L ++ I+I D I G +
Sbjct: 1 MFFLYNLERQVTLHPSYFGRNMHELVTGKLLKD-VEGTCTGRYFIITIMDTFNISEGRIL 59
Query: 61 PGEGASTHTVKFRLVVFRPFVGEIIAAKLKESDANGLRLSLGFFED-----IYVPSHLLP 115
PG G + TV +R VV+RPF GE + A + + +GFF D I+V +HL+P
Sbjct: 60 PGSGLAEFTVGYRAVVWRPFKGETVDAIVTSVN------QVGFFADAGPLPIFVSAHLIP 113
Query: 116 SPSRSEPD 123
+ +P+
Sbjct: 114 PDIKFDPN 121
>gi|229594611|ref|XP_001022929.3| RNA polymerase Rpb7, N-terminal domain containing protein
[Tetrahymena thermophila]
gi|225566753|gb|EAS02684.3| RNA polymerase Rpb7, N-terminal domain containing protein
[Tetrahymena thermophila SB210]
Length = 187
Score = 52.8 bits (125), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 48/197 (24%), Positives = 84/197 (42%), Gaps = 17/197 (8%)
Query: 1 MFYLSKIEHTLRLPPHLLRLPLNEAIKLELENVFLDKVIANLGLCISIYDIKEIEGGFVY 60
MF L +RL P L + I L +L K I + ++I D+ + GFV
Sbjct: 1 MFILCTKREKIRLKPDSLGKDYQKNITKLLYETYLFKAINENEVIVAIKDVT-LYDGFVE 59
Query: 61 PGEGASTHTVKFRLVVFRPFVGEIIAAKLKESDANGLRLSLGFFEDIYVPSHLLPSPSRS 120
G ++ +V + E+ + +A G+ + G + ++ HLL S
Sbjct: 60 QVTGEVVFEIQMTYLVQQIVQNEVYEGTIVSQNAKGITVKFGQLQ-AFIGKHLLQPNSTF 118
Query: 121 EPDPYGRYEVKWIWEFG--DTKYVI--DGLDEIKFRVLSVNY-PSIPIEQAEGSKPFAPM 175
D +WIW+ D+ V+ + ++KF++ ++N+ I EG K
Sbjct: 119 FKDKN-----EWIWQNDEEDSSSVLFYEADAQVKFKIFAINFLAKIDEVNPEGQKQ---- 169
Query: 176 VINGSIDYDGLGPVSWW 192
I G+++ DGLG + WW
Sbjct: 170 -IIGAMNEDGLGLIQWW 185
>gi|449297101|gb|EMC93119.1| hypothetical protein BAUCODRAFT_228826 [Baudoinia compniacensis
UAMH 10762]
Length = 171
Score = 52.8 bits (125), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 34/117 (29%), Positives = 59/117 (50%), Gaps = 6/117 (5%)
Query: 1 MFYLSKIEHTLRLPPHLLRLPLNEAIKLELENVFLDKVIANLG--LCISIYDIKEIEGGF 58
MF++ +EH L L P I+ E ++ ++ N G L I+I DI+++
Sbjct: 1 MFFVKTLEHRLTLHPSYFSAQSQAYIE---EQLYREQEGKNTGTMLIIAIIDIEDVSEPK 57
Query: 59 VYPGEGASTHTVKFRLVVFRPFVGEIIAAKLKESDANGLRLSLGFFEDIYVPSHLLP 115
V PG G + + V FR +V+RPF GE++ + + G + +G ++V L+P
Sbjct: 58 VVPGSGLAQYDVSFRAIVWRPFRGEVVDGLVSSVISGGFFVDVGGLA-VFVSKALIP 113
>gi|255730463|ref|XP_002550156.1| DNA-directed RNA polymerase II 19 kDa polypeptide [Candida
tropicalis MYA-3404]
gi|240132113|gb|EER31671.1| DNA-directed RNA polymerase II 19 kDa polypeptide [Candida
tropicalis MYA-3404]
Length = 173
Score = 52.8 bits (125), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 33/123 (26%), Positives = 59/123 (47%), Gaps = 13/123 (10%)
Query: 1 MFYLSKIEHTLRLPPHLLRLPLNEAIKLELENVFLDKVIANLGLCISIYDIKEIE--GGF 58
MF+L + L L P +++ ++ +L + G + + D I+ G
Sbjct: 1 MFFLKDLSLNLTLHPSFFGPQMDQYLRDKLLSDVEGTCTGQFGYIVCVLDSSHIDVGKGR 60
Query: 59 VYPGEGASTHTVKFRLVVFRPFVGEIIAAKLKESDANGLRLSLGFFED-----IYVPSHL 113
+ PG G + VK+R VV++PF GE++ A + + +GFF D ++V +HL
Sbjct: 61 IIPGTGMAEFEVKYRAVVWKPFKGEVVDAVVHTVN------KMGFFADVGPLSVFVSTHL 114
Query: 114 LPS 116
+PS
Sbjct: 115 IPS 117
>gi|305662653|ref|YP_003858941.1| DNA-directed RNA polymerase [Ignisphaera aggregans DSM 17230]
gi|304377222|gb|ADM27061.1| DNA-directed RNA polymerase [Ignisphaera aggregans DSM 17230]
Length = 182
Score = 52.4 bits (124), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 41/157 (26%), Positives = 72/157 (45%), Gaps = 7/157 (4%)
Query: 1 MFYLSKIEHTLRLPPHLLRLPLNEAIKLELENVFLDKVIANLGLCISIYDIKEIEGGFVY 60
MF + K+ +R+ P L + E EL + NLG+ ++I +IK G++
Sbjct: 1 MFRVYKLRDVVRIDPSKLDREIEEVAFEELRKRYEGLKDRNLGIVLAITNIKVDPIGYIP 60
Query: 61 PGEGASTHTVKFRLVVFRPFVGEIIAAKLKESDANGLRLSLGFFEDIYVPSHLLPSPSRS 120
G+GA H V+F ++ + P VGEI+ ++ G+ + +G E S + R
Sbjct: 61 MGDGAPYHRVEFDVLTYVPIVGEIVEGIVETIGRMGITIRIGPIEGFVHISQISDDEVRY 120
Query: 121 EPDPYGRYEVKWIWEFGDTKYVIDGLDEIKFRVLSVN 157
+P V +TK VI D ++ R+ +V+
Sbjct: 121 DP-------VSNTLICKNTKRVISQGDIVRARITTVS 150
>gi|146418273|ref|XP_001485102.1| hypothetical protein PGUG_02831 [Meyerozyma guilliermondii ATCC
6260]
Length = 173
Score = 52.4 bits (124), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 34/129 (26%), Positives = 60/129 (46%), Gaps = 13/129 (10%)
Query: 1 MFYLSKIEHTLRLPPHLLRLPLNEAIKLELENVFLDKVIANLGLCISIYDIKEIE--GGF 58
MF+L + L L P ++ ++ +L + G + + D I+ G
Sbjct: 1 MFFLKDLSLNLTLHPSYFGPQMDLYLRSKLLSDVEGTCTGQFGYIVCVLDCMNIDVGKGK 60
Query: 59 VYPGEGASTHTVKFRLVVFRPFVGEIIAAKLKESDANGLRLSLGFFED-----IYVPSHL 113
+ PG G + VK+R VV++PF GE++ A + + +GFF D ++V +HL
Sbjct: 61 IIPGSGMAEFEVKYRAVVWKPFKGEVVDAVVTTVN------KMGFFADVGPLSVFVSTHL 114
Query: 114 LPSPSRSEP 122
+PS + P
Sbjct: 115 IPSDMKFNP 123
>gi|315046352|ref|XP_003172551.1| DNA-directed RNA polymerase II subunit RPB7 [Arthroderma gypseum
CBS 118893]
gi|311342937|gb|EFR02140.1| DNA-directed RNA polymerase II subunit RPB7 [Arthroderma gypseum
CBS 118893]
Length = 175
Score = 52.4 bits (124), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 37/134 (27%), Positives = 62/134 (46%), Gaps = 18/134 (13%)
Query: 1 MFYLSKIEHTLRLPPHLLRLPLNEAIKLELENVFLDKVIANLGLC------ISIYDIKEI 54
MF++ +EH L L P +K L LD V G+C + + D+ +I
Sbjct: 1 MFFIHFLEHVLTLHPSFF----GSHVKEYLSQKLLDDV---EGVCTGDYYIVCVMDMYDI 53
Query: 55 EGGFVYPGEGASTHTVKFRLVVFRPFVGEIIAAKLKESDANGLRLSLGFFED-----IYV 109
G + PG G + +T+ +R +V++PF GE + A K + G F + ++V
Sbjct: 54 SEGRIIPGSGLAEYTIVYRAIVWKPFKGETLTAGEKVDAIVTSVKNQGIFAEVGPLTVFV 113
Query: 110 PSHLLPSPSRSEPD 123
HL+P + +PD
Sbjct: 114 SKHLIPPEIKWDPD 127
>gi|397780584|ref|YP_006545057.1| DNA-directed RNA polymerase subunit E' [Methanoculleus bourgensis
MS2]
gi|396939086|emb|CCJ36341.1| DNA-directed RNA polymerase subunit E' [Methanoculleus bourgensis
MS2]
Length = 189
Score = 52.4 bits (124), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 42/160 (26%), Positives = 79/160 (49%), Gaps = 13/160 (8%)
Query: 1 MFYLSKIEHTLRLPPHLLRLPLNEAIKLELENVFLDKVIANLGLCISIYDIKEIEGGFVY 60
M++ +E +R+PPH L L+ I L+ + +G+ I++ + +I G +
Sbjct: 1 MYFKMTLEDKVRVPPHRLGEDLDAVILNVLQEQLEGSIAKEIGIFIAVTKVLDIGEGELI 60
Query: 61 PGEGASTHTVKFRLVVFRPFVGEIIAAKLKESDANGLRLSLGFFEDIYVPSHLLPSPSRS 120
PG+GA + V+F VV R + E+I ++ E+ + G +SLG + + S +
Sbjct: 61 PGDGAVYYDVRFEAVVLRLALQEVIEGEVVETTSFGAFISLGPIDAMLHVSQI------- 113
Query: 121 EPDPYGRYEVK---WIWEFGDTKYVIDGLDEIKFRVLSVN 157
D Y Y+ K I + D+K I D ++ RV++++
Sbjct: 114 -SDEYINYDEKNGRLICQ--DSKRYIAVGDGVRARVVALS 150
>gi|358395852|gb|EHK45239.1| hypothetical protein TRIATDRAFT_299936 [Trichoderma atroviride IMI
206040]
Length = 171
Score = 52.4 bits (124), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 35/123 (28%), Positives = 60/123 (48%), Gaps = 2/123 (1%)
Query: 1 MFYLSKIEHTLRLPPHLLRLPLNEAIKLELENVFLDKVIANLGLCISIYDIKEIEGGFVY 60
MF+L +E + L P +++ + +L ++ A ISI D +I G +
Sbjct: 1 MFFLYNMERRVTLHPSYFGRNMHDLVTSKLLKD-VEGTCAGSYYIISIMDTFDISEGRIL 59
Query: 61 PGEGASTHTVKFRLVVFRPFVGEIIAAKLKESDANGLRLSLGFFEDIYVPSHLLPSPSRS 120
P G + TV +R VV+RPF GE + A + + G G ++V +HL+PS +
Sbjct: 60 PSNGLAEFTVGYRAVVWRPFKGETVDAVVYSINPQGFFAQAGPLR-LFVSAHLIPSDIKW 118
Query: 121 EPD 123
+P+
Sbjct: 119 DPN 121
>gi|58266678|ref|XP_570495.1| hypothetical protein [Cryptococcus neoformans var. neoformans
JEC21]
gi|57226728|gb|AAW43188.1| conserved hypothetical protein [Cryptococcus neoformans var.
neoformans JEC21]
Length = 172
Score = 52.0 bits (123), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 31/122 (25%), Positives = 57/122 (46%), Gaps = 1/122 (0%)
Query: 1 MFYLSKIEHTLRLPPHLLRLPLNEAIKLELENVFLDKVIANLGLCISIYDIKEIEGGFVY 60
MF+L ++ HT+ L P L + ++ +L G IS+ I +I G +
Sbjct: 1 MFFLRELTHTILLHPSYFGAQLEDYLRQKLYEDVEGTCSGKHGYIISVITITDIGEGKII 60
Query: 61 PGEGASTHTVKFRLVVFRPFVGEIIAAKLKESDANGLRLSLGFFEDIYVPSHLLPSPSRS 120
P G + ++ +V +PF GE++ AK+ + G +G + ++V HL S +
Sbjct: 61 PSTGQAKFKTRYTAIVMKPFKGEVVDAKVVNVNKMGFFAMVGPLQ-VFVSCHLTHSDMKF 119
Query: 121 EP 122
+P
Sbjct: 120 DP 121
>gi|378733206|gb|EHY59665.1| DNA-directed RNA polymerase III subunit C25 [Exophiala dermatitidis
NIH/UT8656]
Length = 155
Score = 52.0 bits (123), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 48/201 (23%), Positives = 75/201 (37%), Gaps = 55/201 (27%)
Query: 1 MFYLSKIEHTLRLPPH--LLRLPLNEAIKLELENVFLDKVIANLGLCISIYDIKEIEGGF 58
MF L+ E +++PP+ L E ++ + + +KV+ +GLCI +YD+ + G
Sbjct: 1 MFILTTFEDLVQIPPYGFLNNQITREDLEDRINEKYSNKVVQKVGLCICMYDLLKASDGL 60
Query: 59 VYPGEGASTHTVKFRLVVFRPFVGEIIAAKLKESDANGLRLSLGFFEDIYVPSHLLPSPS 118
+ G G ++ NG + +L P+
Sbjct: 61 IGNGTG--------------------------NANVNGGKSAL---------------PT 79
Query: 119 RSEPDPYGRYEVKWIWEFGDTKYVIDGLDEIKFRVLSVNY----PSIPIEQAEGSKPF-- 172
S+ D E WIW+ GD D + RV S + P P + E K
Sbjct: 80 FSDED-----EQTWIWKTGDASLYFDPATVVNLRVESEKWHDQAPKGPQAEGEAEKQTER 134
Query: 173 -APMVINGSIDYDGLGPVSWW 192
P I S+ GLG V WW
Sbjct: 135 KVPYAIEASMAESGLGGVDWW 155
>gi|403341587|gb|EJY70102.1| DNA-directed RNA polymerase II subunit Rpb7, putative [Oxytricha
trifallax]
gi|403342420|gb|EJY70530.1| DNA-directed RNA polymerase II subunit Rpb7, putative [Oxytricha
trifallax]
Length = 174
Score = 52.0 bits (123), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/104 (28%), Positives = 53/104 (50%), Gaps = 2/104 (1%)
Query: 1 MFYLSKIEHTLRLPPHLLRLPLNEAIKLELENVFLDKVIANLGLCISIYDIK--EIEGGF 58
MF++ IE +R+ P+ L L I+ ++E++ + G I I +K +I G
Sbjct: 1 MFFIVTIEKVVRIEPYELGKNLIYKIRKKIEDITVGTCSGTYGYIIQIIQMKPQDISDGR 60
Query: 59 VYPGEGASTHTVKFRLVVFRPFVGEIIAAKLKESDANGLRLSLG 102
+ G + VKF+ +VFRPF GE++ ++ + NG + G
Sbjct: 61 IQDTTGDVIYKVKFKALVFRPFRGEVLDGEVIDITDNGFMIESG 104
>gi|347522806|ref|YP_004780376.1| DNA-directed RNA polymerase [Pyrolobus fumarii 1A]
gi|343459688|gb|AEM38124.1| DNA-directed RNA polymerase [Pyrolobus fumarii 1A]
Length = 192
Score = 52.0 bits (123), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 33/114 (28%), Positives = 61/114 (53%), Gaps = 1/114 (0%)
Query: 1 MFYLSKIEHTLRLPPHLLRLPLNEAIKLELENVFLDKVIANL-GLCISIYDIKEIEGGFV 59
M+ ++++E +R+PP L LPL EA L + +V L + I++ ++ E G +
Sbjct: 1 MYMVARVEDVVRIPPSLFHLPLKEAALRVLRQKYEGRVDRELKAIIITVLNVDVEEMGRI 60
Query: 60 YPGEGASTHTVKFRLVVFRPFVGEIIAAKLKESDANGLRLSLGFFEDIYVPSHL 113
PG+G + H F L++FRP E++ ++ E +G+ + LG + SH+
Sbjct: 61 IPGDGGTWHRATFDLLLFRPEQNEVVEGRVVEVVEHGIFVDLGPLDGYIHVSHI 114
>gi|297796859|ref|XP_002866314.1| DNA-directed RNA polymerase II [Arabidopsis lyrata subsp. lyrata]
gi|297312149|gb|EFH42573.1| DNA-directed RNA polymerase II [Arabidopsis lyrata subsp. lyrata]
Length = 176
Score = 52.0 bits (123), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 37/120 (30%), Positives = 55/120 (45%), Gaps = 11/120 (9%)
Query: 1 MFYLSKIEHTLRLPPHLLRLPLNEAIKLELENVFLDKVIANLGLCISIYDIKEIEGGFVY 60
MF+ +E ++L P L E + +L G ++I I+ I G +
Sbjct: 1 MFFHIVLERNMQLHPRFFGRNLRENLVSKLMKDVEGTCSGRHGFVVAITGIESIGKGLIR 60
Query: 61 PGEGASTHTVKFRLVVFRPFVGEIIAAKLKESDANGLRLSLGFFED-----IYVPSHLLP 115
G G T VK++ VVFRPF GEI+ A + L +GFF + I+V HL+P
Sbjct: 61 DGTGFVTFPVKYQCVVFRPFKGEILEAVVT------LVNKMGFFAEAGPVQIFVSKHLIP 114
>gi|332249762|ref|XP_003274027.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB7 [Nomascus
leucogenys]
Length = 134
Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 31/112 (27%), Positives = 55/112 (49%), Gaps = 6/112 (5%)
Query: 43 GLCISIYDIKEIEGGFVYPGEGASTHTVKFRLVVFRPFVGEIIAAKLKESDANGLRLSLG 102
G I++ I I G + PG G + VK++ +VFRPF GE++ A + + + GL +G
Sbjct: 5 GFVIAVTTIDNIGAGVIQPGRGFVLYPVKYKAIVFRPFKGEVVDAVVTQVNKVGLFTEIG 64
Query: 103 FFEDIYVPSHLLPSPSRSEPDPYGRYEVKWIWEFGDTKYVIDGLDEIKFRVL 154
++ H +PS +P+ ++ D VI DEI+ +++
Sbjct: 65 PMS-CFISRHSIPSEMEFDPNSN-----PPCYKTMDEDIVIQQDDEIRLKIV 110
>gi|73667834|ref|YP_303849.1| DNA-directed RNA polymerase subunit E' [Methanosarcina barkeri str.
Fusaro]
gi|72394996|gb|AAZ69269.1| DNA-directed RNA polymerase, subunit E' [Methanosarcina barkeri
str. Fusaro]
Length = 194
Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 41/159 (25%), Positives = 77/159 (48%), Gaps = 11/159 (6%)
Query: 1 MFYLSKIEHTLRLPPHLLRLPLNEAIKLELENVFLDKVIANLGLCISIYDIKEIEGGFVY 60
M+ + K+ T+R+PP LL + + +K L +V LG ++I I EI G +
Sbjct: 1 MYKMMKLVDTVRIPPTLLGEEVTQTVKNALREKLEGQVDKKLGSLVAICKIVEIGEGHIL 60
Query: 61 PGEGASTHTVKFRLVVFRPFVGEIIAAKLKESDANGLRLSLGFFEDIYVPSHLLPSPSRS 120
G+GA + V F ++F P + EII ++ E+ G+ + +G + + S +
Sbjct: 61 VGDGAVYYDVTFEAIMFVPELQEIIEGEVVETVGFGVFVGMGPMDGLLHVSQI------- 113
Query: 121 EPDPYGRYEVK--WIWEFGDTKYVIDGLDEIKFRVLSVN 157
D + Y+ K + K + +G D ++ RV++V+
Sbjct: 114 -TDDFISYDAKNARLVTKNGGKSIAEG-DHVRARVVAVS 150
>gi|367042626|ref|XP_003651693.1| hypothetical protein THITE_2112268 [Thielavia terrestris NRRL 8126]
gi|346998955|gb|AEO65357.1| hypothetical protein THITE_2112268 [Thielavia terrestris NRRL 8126]
Length = 167
Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 34/115 (29%), Positives = 57/115 (49%), Gaps = 2/115 (1%)
Query: 1 MFYLSKIEHTLRLPPHLLRLPLNEAIKLELENVFLDKVIANLGLCISIYDIKEIEGGFVY 60
MF+L +E + L P ++E + +L ++ A I+I D ++ G +
Sbjct: 1 MFFLHNLERRVTLHPSYFGRNMHELVTTKLVKD-VEGTCAGDYYIIAIMDTFDVSEGRIL 59
Query: 61 PGEGASTHTVKFRLVVFRPFVGEIIAAKLKESDANGLRLSLGFFEDIYVPSHLLP 115
PG G + TV +R VV+RPF GE+I A + + +G G ++V S L+P
Sbjct: 60 PGSGLAEFTVGYRAVVWRPFKGEVIDAITQTVNPHGFFAQAGPLR-LFVSSQLMP 113
>gi|395852612|ref|XP_003798829.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB7 [Otolemur
garnettii]
Length = 170
Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/102 (30%), Positives = 48/102 (47%), Gaps = 2/102 (1%)
Query: 1 MFYLSKIEHTLRLPPHLLRLPLNEAIKLELENVFLDKVIANLGLCISIYDIKEIEGGFVY 60
MFY +EH + L P L +K +L G I++ I I G +
Sbjct: 1 MFYHISLEHEILLHPRYFGPNLLNTVKQKLFTEVEGTCTGKYGFVIAVTTIDNIGAGVIQ 60
Query: 61 PGEGASTHTVKFRLVVFRPFVGEIIAAKLKESDANGLRLSLG 102
PG G + VK++ +VFRPF GE++ A + + N +R +G
Sbjct: 61 PGRGFVLYPVKYKAIVFRPFKGEVVDAVVTQ--VNKVRPYIG 100
>gi|57641634|ref|YP_184112.1| DNA-directed RNA polymerase subunit E' [Thermococcus kodakarensis
KOD1]
gi|57159958|dbj|BAD85888.1| DNA-directed RNA polymerase, subunit E' [Thermococcus
kodakarensis KOD1]
Length = 190
Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 45/79 (56%)
Query: 1 MFYLSKIEHTLRLPPHLLRLPLNEAIKLELENVFLDKVIANLGLCISIYDIKEIEGGFVY 60
M+ L K++ +R+PP + + EA K+ L + + G+ ++I D++EI G +
Sbjct: 1 MYKLLKVKDVVRIPPRMFTMDPKEAAKIVLRETYEGIYDRDEGVVLAILDVEEISEGVIV 60
Query: 61 PGEGASTHTVKFRLVVFRP 79
PG+GA+ H F ++V+ P
Sbjct: 61 PGDGATYHEAIFNVLVWEP 79
>gi|134110566|ref|XP_776110.1| hypothetical protein CNBD1580 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|50258778|gb|EAL21463.1| hypothetical protein CNBD1580 [Cryptococcus neoformans var.
neoformans B-3501A]
Length = 169
Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 32/127 (25%), Positives = 58/127 (45%), Gaps = 14/127 (11%)
Query: 1 MFYLSKIEHTLRLPPHLLRLPLNEAIKLELENVFLDKVIANLGLCISIYDIKEIEGGFVY 60
MF+L ++ HT+ L P L + ++ +L G IS+ I +I G +
Sbjct: 1 MFFLRELTHTILLHPSYFGAQLEDYLRQKLYEDVEGTCSGKHGYIISVITITDIGEGKII 60
Query: 61 PGEGASTHTVKFRLVVFRPFVGEIIAAKLKESDANGLRLSLGFFE-----DIYVPSHLLP 115
P G + ++ +V +PF GE++ AK+ +++GFF ++V HL
Sbjct: 61 PSTGQAKFKTRYTAIVMKPFKGEVVDAKV---------VNMGFFAMVGPLQVFVSCHLTH 111
Query: 116 SPSRSEP 122
S + +P
Sbjct: 112 SDMKFDP 118
>gi|255558950|ref|XP_002520498.1| DNA-directed RNA polymerase II 19 kD polypeptide rpb7, putative
[Ricinus communis]
gi|223540340|gb|EEF41911.1| DNA-directed RNA polymerase II 19 kD polypeptide rpb7, putative
[Ricinus communis]
Length = 176
Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 35/120 (29%), Positives = 56/120 (46%), Gaps = 11/120 (9%)
Query: 1 MFYLSKIEHTLRLPPHLLRLPLNEAIKLELENVFLDKVIANLGLCISIYDIKEIEGGFVY 60
MF+ +E ++L P L E + +L G ++I I+ + G +
Sbjct: 1 MFFHIVLERNMQLHPRYFGRNLRENLVSKLMKDVEGTCSGRHGFVVAITGIESVGKGLIR 60
Query: 61 PGEGASTHTVKFRLVVFRPFVGEIIAAKLKESDANGLRLSLGFFED-----IYVPSHLLP 115
G G T VK++ VVFRPF GEI+ A + + +GFF + I+V +HL+P
Sbjct: 61 DGTGFVTFPVKYQCVVFRPFKGEILEAVVTMVN------KMGFFAEAGPVQIFVSNHLIP 114
>gi|328773740|gb|EGF83777.1| hypothetical protein BATDEDRAFT_29094 [Batrachochytrium
dendrobatidis JAM81]
Length = 180
Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 42/194 (21%), Positives = 85/194 (43%), Gaps = 21/194 (10%)
Query: 1 MFYLSKIEHTLRLPPHL----LRLPLNEAIKLELENVFLDKVIANLGLCISIYDIKEIEG 56
MF+L ++ HT+ L P +R L + E+E + G IS+ DI ++
Sbjct: 1 MFFLKQLSHTINLHPQFFGPQIRAFLTRRLYEEVEGI----CSGQFGYIISVVDIVDVGK 56
Query: 57 GFVYPGEGASTHTVKFRLVVFRPFVGEIIAAKLKESDANGLRLSLGFFEDIYVPSHLLPS 116
G + G + + ++ +VF+PF +++ + + G +G + ++V SHL+P
Sbjct: 57 GVLQSNTGFAQFEILYKAIVFKPFKNQVVDGLVTTVNKIGFWADVGPLQ-VFVSSHLIPG 115
Query: 117 PSRSEPDPYGRYEVKWIWEFGDTKYVIDGLDEIKFRVLSVNYPSIPIEQAEGSKPFAPMV 176
+ + + V EFG+ ++ ++ R++ + + ++ FA
Sbjct: 116 YLKFDANANPPAYVGEGQEFGEAALRVEKGAVVRLRIVGT--------RVDATEIFAI-- 165
Query: 177 INGSIDYDGLGPVS 190
G+I D LGP
Sbjct: 166 --GTIKEDFLGPAQ 177
>gi|344234578|gb|EGV66446.1| hypothetical protein CANTEDRAFT_112179 [Candida tenuis ATCC 10573]
Length = 173
Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 33/129 (25%), Positives = 60/129 (46%), Gaps = 13/129 (10%)
Query: 1 MFYLSKIEHTLRLPPHLLRLPLNEAIKLELENVFLDKVIANLGLCISIYDIKEIE--GGF 58
MF+L + L L P +++ ++ +L + G + + D I+ G
Sbjct: 1 MFFLKDLSLNLTLHPSYFGPQMDQYLRDKLLSDVEGTCTGQFGYIVCVLDCMNIDVGKGR 60
Query: 59 VYPGEGASTHTVKFRLVVFRPFVGEIIAAKLKESDANGLRLSLGFFED-----IYVPSHL 113
+ P G + VK+R VV++PF GE++ A + + +GFF D ++V +HL
Sbjct: 61 IIPSSGMAEFEVKYRAVVWKPFKGEVVDAIVTTVN------KMGFFADVGPLSVFVSTHL 114
Query: 114 LPSPSRSEP 122
+PS + P
Sbjct: 115 IPSDMQFNP 123
>gi|449466050|ref|XP_004150740.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB7-like
[Cucumis sativus]
gi|449518487|ref|XP_004166273.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB7-like
[Cucumis sativus]
Length = 176
Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 36/120 (30%), Positives = 56/120 (46%), Gaps = 11/120 (9%)
Query: 1 MFYLSKIEHTLRLPPHLLRLPLNEAIKLELENVFLDKVIANLGLCISIYDIKEIEGGFVY 60
MF+ +E ++L P L E + +L G ++I I+ I G +
Sbjct: 1 MFFHIVLERNMQLHPRHFGRNLRENLVSKLMKDVEGTCSGRHGFVVAITGIENIGKGLIR 60
Query: 61 PGEGASTHTVKFRLVVFRPFVGEIIAAKLKESDANGLRLSLGFFED-----IYVPSHLLP 115
G G T VK++ VVFRPF GEI+ A + + +GFF + I+V +HL+P
Sbjct: 61 DGTGFVTFPVKYQCVVFRPFKGEILEAVVTMVN------KMGFFAEAGPVQIFVSNHLIP 114
>gi|254574492|ref|XP_002494355.1| RNA polymerase II subunit [Komagataella pastoris GS115]
gi|238034154|emb|CAY72176.1| RNA polymerase II subunit [Komagataella pastoris GS115]
gi|328353828|emb|CCA40225.1| DNA-directed RNA polymerase II subunit G [Komagataella pastoris CBS
7435]
Length = 171
Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 34/128 (26%), Positives = 59/128 (46%), Gaps = 6/128 (4%)
Query: 1 MFYLSKIEHTLRLPPHLLRLPLNEAIKLELENVFLDKVIANLGLCISIYDIKEIE--GGF 58
MF+L + L L P +N+ ++ +L G +++ D I+ G
Sbjct: 1 MFFLKDLSLILTLHPSYFGPQMNQYLREKLLTDVEGTCTGQFGYIVTVLDGMNIDVGKGR 60
Query: 59 VYPGEGASTHTVKFRLVVFRPFVGEIIAAKLKESDANGLRLSLG----FFEDIYVPSHLL 114
+ PG G++ VK+R VV++PF GE++ A + G +G F +P +L+
Sbjct: 61 IIPGSGSAEFEVKYRAVVWKPFKGEVVDAIVSNVSPIGFFADVGPLNVFVSTRLIPDNLV 120
Query: 115 PSPSRSEP 122
+PS S P
Sbjct: 121 YNPSNSPP 128
>gi|15237831|ref|NP_200726.1| DNA-directed RNA polymerase II subunit RPB7 [Arabidopsis thaliana]
gi|585917|sp|P38421.1|RPB7_ARATH RecName: Full=DNA-directed RNA polymerase II subunit RPB7;
Short=RNA polymerase II subunit B7
gi|166854|gb|AAA32861.1| RNA polymerase II [Arabidopsis thaliana]
gi|9759239|dbj|BAB09763.1| DNA-directed RNA polymerase II 19 kD polypeptide (RNA polymerase II
subunit 5) [Arabidopsis thaliana]
gi|26452908|dbj|BAC43532.1| putative RNA polymerase II [Arabidopsis thaliana]
gi|28973525|gb|AAO64087.1| putative RNA polymerase II [Arabidopsis thaliana]
gi|332009771|gb|AED97154.1| DNA-directed RNA polymerase II subunit RPB7 [Arabidopsis thaliana]
Length = 176
Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 37/120 (30%), Positives = 54/120 (45%), Gaps = 11/120 (9%)
Query: 1 MFYLSKIEHTLRLPPHLLRLPLNEAIKLELENVFLDKVIANLGLCISIYDIKEIEGGFVY 60
MF+ +E ++L P L E + +L G ++I I I G +
Sbjct: 1 MFFHIVLERNMQLHPRFFGRNLKENLVSKLMKDVEGTCSGRHGFVVAITGIDTIGKGLIR 60
Query: 61 PGEGASTHTVKFRLVVFRPFVGEIIAAKLKESDANGLRLSLGFFED-----IYVPSHLLP 115
G G T VK++ VVFRPF GEI+ A + L +GFF + I+V HL+P
Sbjct: 61 DGTGFVTFPVKYQCVVFRPFKGEILEAVVT------LVNKMGFFAEAGPVQIFVSKHLIP 114
>gi|68475103|ref|XP_718437.1| likely RNA Pol II core complex subunit [Candida albicans SC5314]
gi|68475644|ref|XP_718170.1| likely RNA Pol II core complex subunit [Candida albicans SC5314]
gi|241948197|ref|XP_002416821.1| DNA-directed RNA polymerase II 19 kda polypeptide, putative;
DNA-directed RNA polymerase II core complex subunit,
putative [Candida dubliniensis CD36]
gi|12655858|gb|AAK00627.1| RNA polymerase II subunit 7 [Candida albicans]
gi|46439926|gb|EAK99238.1| likely RNA Pol II core complex subunit [Candida albicans SC5314]
gi|46440202|gb|EAK99511.1| likely RNA Pol II core complex subunit [Candida albicans SC5314]
gi|223640159|emb|CAX44406.1| DNA-directed RNA polymerase II 19 kda polypeptide, putative
[Candida dubliniensis CD36]
Length = 173
Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 33/129 (25%), Positives = 60/129 (46%), Gaps = 13/129 (10%)
Query: 1 MFYLSKIEHTLRLPPHLLRLPLNEAIKLELENVFLDKVIANLGLCISIYDIKEIE--GGF 58
MF+L + L L P +++ ++ +L + G + + D I+ G
Sbjct: 1 MFFLKDLSLNLTLHPSFFGPQMDQYLREKLLSDVEGTCTGQFGYIVCVLDSMNIDVGKGR 60
Query: 59 VYPGEGASTHTVKFRLVVFRPFVGEIIAAKLKESDANGLRLSLGFFED-----IYVPSHL 113
+ P G + VK+R VV++PF GE++ A + + +GFF D ++V +HL
Sbjct: 61 IIPSTGMAEFEVKYRAVVWKPFKGEVVDAVVTTVN------KMGFFADVGPLSVFVSTHL 114
Query: 114 LPSPSRSEP 122
+PS + P
Sbjct: 115 IPSDMKFNP 123
>gi|340992705|gb|EGS23260.1| hypothetical protein CTHT_0009270 [Chaetomium thermophilum var.
thermophilum DSM 1495]
Length = 171
Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 34/115 (29%), Positives = 57/115 (49%), Gaps = 2/115 (1%)
Query: 1 MFYLSKIEHTLRLPPHLLRLPLNEAIKLELENVFLDKVIANLGLCISIYDIKEIEGGFVY 60
MF+L +E + L P ++E + +L ++ A I+I D +I G +
Sbjct: 1 MFFLHNLERRVTLHPSYFGKNMHELVTTKLVKD-VEGTCAGDYYVIAIMDTFDISEGRIL 59
Query: 61 PGEGASTHTVKFRLVVFRPFVGEIIAAKLKESDANGLRLSLGFFEDIYVPSHLLP 115
PG G + TV +R VV+RPF E+I A + + +G G ++V +HL+P
Sbjct: 60 PGSGLAEFTVGYRAVVWRPFKNEVIDAIVTTVNPHGFFAQAGPLR-LFVSTHLIP 113
>gi|213403826|ref|XP_002172685.1| DNA-directed RNA polymerase II subunit RPB7 [Schizosaccharomyces
japonicus yFS275]
gi|212000732|gb|EEB06392.1| DNA-directed RNA polymerase II subunit RPB7 [Schizosaccharomyces
japonicus yFS275]
Length = 172
Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 38/141 (26%), Positives = 67/141 (47%), Gaps = 18/141 (12%)
Query: 2 FYLSKIEHTLRLPPHLLRLPLNEAIKLELENVFLDKVIANLGLCISIYDIK--EIEGGFV 59
F+L ++ T+ L P + + +K +L G I + D +I+ G V
Sbjct: 3 FFLKELSLTISLHPSYFGPHMRDYLKAKLLADVEGTCSGQYGYIICVLDSNTIDIDKGKV 62
Query: 60 YPGEGASTHTVKFRLVVFRPFVGEIIAAKLKESDANGLRLSLGFFED-----IYVPSHLL 114
PG+G + VK+R +++RPF GE++ A + + +GFF D ++V SHL+
Sbjct: 63 IPGQGFAEFEVKYRAILWRPFRGEVVDAVVTTVN------KMGFFADVGPLSVFVSSHLV 116
Query: 115 P-----SPSRSEPDPYGRYEV 130
P P+ + P+ G +V
Sbjct: 117 PPDMTFDPAANPPNYSGEDQV 137
>gi|345566807|gb|EGX49749.1| hypothetical protein AOL_s00078g238 [Arthrobotrys oligospora ATCC
24927]
Length = 169
Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 36/134 (26%), Positives = 64/134 (47%), Gaps = 26/134 (19%)
Query: 1 MFYLSKIEHTLRLPPHLLRLPLNEAIKLELENVFLDKVIANL-GLC------ISIYDIKE 53
MF+L +E T+ L P+ + E + ++K++ ++ G C I + D
Sbjct: 1 MFFLYDLERTITLHPYYFGPHMREYL--------INKLLTDVEGTCTGRYYIICVLDAYN 52
Query: 54 IEGGFVYPGEGASTHTVKFRLVVFRPFVGEIIAAKLKESDANGLRLSLGFFED-----IY 108
I G + PG G + T+ +R VV+RPF GE + + LGFF + ++
Sbjct: 53 ISMGKILPGSGLAEFTISYRAVVWRPFKGETVDGVVTAVS------KLGFFANVGPLPVF 106
Query: 109 VPSHLLPSPSRSEP 122
V +HL+P+ + +P
Sbjct: 107 VSTHLIPADVKFDP 120
>gi|389851850|ref|YP_006354084.1| DNA-directed RNA polymerase subunit E' [Pyrococcus sp. ST04]
gi|388249156|gb|AFK22009.1| DNA-directed RNA polymerase subunit E' [Pyrococcus sp. ST04]
Length = 188
Score = 50.8 bits (120), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 42/192 (21%), Positives = 89/192 (46%), Gaps = 18/192 (9%)
Query: 1 MFYLSKIEHTLRLPPHLLRLPLNEAIKLELENVFLDKVIANLGLCISIYDIKEIEGGFVY 60
M+ + ++ +R+PP + + EA + L + + G+ +SI ++KE+ G +
Sbjct: 1 MYKIVTVKDVVRIPPRMFTMDPKEAAMIVLREAYEGTYDRDEGVILSIVEVKEVGDGIIV 60
Query: 61 PGEGASTHTVKFRLVVFRPFVGEIIAAKLKESDANGLRLSLGFFEDIYVPSHLLPSPSRS 120
PG+GA+ H V F ++V+ P + E++ + + G + +G + + S L+
Sbjct: 61 PGDGATYHEVVFDVLVWEPKLHEVVEGTVVDVVPFGAFIRIGPMDGLVHISQLM------ 114
Query: 121 EPDPYGRYEVKWIWEFG-DTKYVIDGLDEIKFRVLSVNYPSIPIEQAEGSKPFAPMVING 179
D Y Y+ + G + KY++ D ++ R+++++ S I + I
Sbjct: 115 --DDYVVYDERNKQFVGKEKKYLLKLGDPVRARIIAISPKSRIIRENR---------IGL 163
Query: 180 SIDYDGLGPVSW 191
++ GLG W
Sbjct: 164 TMRQPGLGKFEW 175
>gi|255717771|ref|XP_002555166.1| KLTH0G02926p [Lachancea thermotolerans]
gi|238936550|emb|CAR24729.1| KLTH0G02926p [Lachancea thermotolerans CBS 6340]
Length = 171
Score = 50.8 bits (120), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 34/135 (25%), Positives = 60/135 (44%), Gaps = 7/135 (5%)
Query: 1 MFYLSKIEHTLRLPPHLLRLPLNEAIKLELENVFLDKVIANLGLCISIYDIK--EIEGGF 58
MF+ + + L P + + ++ +L G + + D + EIE G
Sbjct: 1 MFFFKDLSLNITLHPSFFGPQMKQYLRTKLLQEVEGTCTGKFGYILCVLDCENVEIERGR 60
Query: 59 VYPGEGASTHTVKFRLVVFRPFVGEIIAAKLKESDANGLRLSLGFFEDIYVPSHLLPSP- 117
+ PG+G++ TVK+R VV++PF GE++ + G + +G ++V L+P
Sbjct: 61 ILPGDGSAEFTVKYRAVVWKPFKGEVVDGVVSSCTNLGFEVDVGPL-SVFVSPFLMPEDL 119
Query: 118 ---SRSEPDPYGRYE 129
S S P Y E
Sbjct: 120 SYNSGSNPPSYQSSE 134
>gi|289192398|ref|YP_003458339.1| DNA-directed RNA polymerase [Methanocaldococcus sp. FS406-22]
gi|288938848|gb|ADC69603.1| DNA-directed RNA polymerase [Methanocaldococcus sp. FS406-22]
Length = 187
Score = 50.8 bits (120), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 44/176 (25%), Positives = 86/176 (48%), Gaps = 12/176 (6%)
Query: 1 MFYLSKIEHTLRLPPHLLRLPLNEAIKLELENVFLDKVIANLGLCISIYDIKEIEGGFVY 60
M+ + +I +++PP L E +K L + ++ ++G +SI D+K+I G V
Sbjct: 1 MYKILEIADVVKVPPEEFGKDLKETVKKILMEKYEGRLDKDIGFILSIVDVKDIGNGKVV 60
Query: 61 PGEGASTHTVKFRLVVFRPFVGEIIAAKLKESDANGLRLSLGFFEDIYVPSHLLPSPSRS 120
G+G++ H V F +V+ P + E+I ++ + G + LG + + S ++
Sbjct: 61 HGDGSAYHPVVFETLVYMPEMYELIEGEVVDVVEFGSFVRLGPLDGLIHVSQIM------ 114
Query: 121 EPDPYGRYEVKWIWEFG-DTKYVIDGLDEIKFRVLSVNYPSIPIEQAEGSKPFAPM 175
D Y Y+ K G +T V++ D ++ R++++ S+ E+ GSK M
Sbjct: 115 --DDYVSYDPKREAIIGKETGKVLEIGDYVRARIVAI---SLKAERKRGSKIALTM 165
>gi|358341785|dbj|GAA49376.1| DNA-directed RNA polymerase III subunit RPC8 [Clonorchis
sinensis]
Length = 307
Score = 50.8 bits (120), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 40/65 (61%)
Query: 1 MFYLSKIEHTLRLPPHLLRLPLNEAIKLELENVFLDKVIANLGLCISIYDIKEIEGGFVY 60
MF L+K+E T+ + P L E I+ EL F +K++ +GLCIS++D+ E++ F+
Sbjct: 11 MFILAKLEDTVVIHPKYFGTDLKETIEHELNARFANKLVYKVGLCISLWDLLEVQESFIS 70
Query: 61 PGEGA 65
+GA
Sbjct: 71 DVDGA 75
>gi|340373532|ref|XP_003385295.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB7-like
[Amphimedon queenslandica]
Length = 172
Score = 50.8 bits (120), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 33/123 (26%), Positives = 57/123 (46%), Gaps = 1/123 (0%)
Query: 1 MFYLSKIEHTLRLPPHLLRLPLNEAIKLELENVFLDKVIANLGLCISIYDIKEIEGGFVY 60
MF+ +EH + L P L E +K +L G I++ I I G +
Sbjct: 1 MFFHIPLEHEILLHPRYFGPNLLETVKKKLFTEVEGTCTGKHGFVIAVTTIDNIGLGMLQ 60
Query: 61 PGEGASTHTVKFRLVVFRPFVGEIIAAKLKESDANGLRLSLGFFEDIYVPSHLLPSPSRS 120
G G + + VK++ +VFRPF GE++ A + + + GL +G ++ H +P
Sbjct: 61 TGRGVALYPVKYKAIVFRPFKGEVLDALVIQVNKLGLFTQIGPL-TCFISRHSIPPEMEF 119
Query: 121 EPD 123
+P+
Sbjct: 120 DPN 122
>gi|164427822|ref|XP_965434.2| DNA-directed RNA polymerase II 19 kDa polypeptide [Neurospora
crassa OR74A]
gi|157071898|gb|EAA36198.2| DNA-directed RNA polymerase II 19 kDa polypeptide [Neurospora
crassa OR74A]
Length = 150
Score = 50.8 bits (120), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 28/78 (35%), Positives = 44/78 (56%), Gaps = 1/78 (1%)
Query: 46 ISIYDIKEIEGGFVYPGEGASTHTVKFRLVVFRPFVGEIIAAKLKESDANGLRLSLGFFE 105
I+I D ++ G + PG G + TVK+R VV+RPF GE++ A + + +G G
Sbjct: 24 IAIMDAFDVSEGRILPGNGLAEFTVKYRAVVWRPFKGEVVDAIVFSINPHGFFCQAGPLS 83
Query: 106 DIYVPSHLLPSPSRSEPD 123
I+V SHL+P +P+
Sbjct: 84 -IFVSSHLMPEEIHFDPN 100
>gi|336463961|gb|EGO52201.1| hypothetical protein NEUTE1DRAFT_125733 [Neurospora tetrasperma
FGSC 2508]
Length = 107
Score = 50.4 bits (119), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 37/68 (54%), Gaps = 4/68 (5%)
Query: 56 GGFVYPGEGASTHT----VKFRLVVFRPFVGEIIAAKLKESDANGLRLSLGFFEDIYVPS 111
G ++ +TH V+F +VVFRPF E+I A++ G+ L + FF DI+VP+
Sbjct: 39 GNNIFEQAHETTHLTAVFVEFEMVVFRPFKHEVILARITHQTEEGIYLGMDFFNDIFVPA 98
Query: 112 HLLPSPSR 119
LP S
Sbjct: 99 AELPDNSE 106
>gi|238879354|gb|EEQ42992.1| DNA-directed RNA polymerase II 19 kDa polypeptide [Candida albicans
WO-1]
Length = 173
Score = 50.4 bits (119), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 33/129 (25%), Positives = 59/129 (45%), Gaps = 13/129 (10%)
Query: 1 MFYLSKIEHTLRLPPHLLRLPLNEAIKLELENVFLDKVIANLGLCISIYDIKEIE--GGF 58
MF+L + L L P +++ ++ +L + G + + D I+ G
Sbjct: 1 MFFLKDLSLNLTLHPSFFGPQMDQYLREKLLSDVEGTCTGQFGYIVCVLDSMNIDVGKGR 60
Query: 59 VYPGEGASTHTVKFRLVVFRPFVGEIIAAKLKESDANGLRLSLGFFED-----IYVPSHL 113
+ P G VK+R VV++PF GE++ A + + +GFF D ++V +HL
Sbjct: 61 IIPSTGKVEFEVKYRAVVWKPFKGEVVDAVVTTVN------KMGFFADVGPLSVFVSTHL 114
Query: 114 LPSPSRSEP 122
+PS + P
Sbjct: 115 IPSDMKFNP 123
>gi|164657466|ref|XP_001729859.1| hypothetical protein MGL_2845 [Malassezia globosa CBS 7966]
gi|159103753|gb|EDP42645.1| hypothetical protein MGL_2845 [Malassezia globosa CBS 7966]
Length = 186
Score = 50.4 bits (119), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 34/139 (24%), Positives = 62/139 (44%), Gaps = 17/139 (12%)
Query: 1 MFYLSKIEHTLRLPP--------HLLRLPLNEAIKLELENVFLDK--------VIANLGL 44
MF+L ++H L P L L + ++ V++ ++ + G
Sbjct: 1 MFFLKTLDHRTELHPSFFGPSMIEFLNRKLRDDVEGTCSGVYVRTYKSMRLMLILESQGY 60
Query: 45 CISIYDIKEIEGGFVYPGEGASTHTVKFRLVVFRPFVGEIIAAKLKESDANGLRLSLGFF 104
I + + ++ G V PG G + +++ +V +PF GE++ AK+ + G +G
Sbjct: 61 IIKVVSVLDVGQGKVMPGTGLAEFRSRYQAIVLKPFNGEVVDAKITNVNKMGFFAEVGPL 120
Query: 105 EDIYVPSHLLPSPSRSEPD 123
I+V SHLLP + PD
Sbjct: 121 S-IFVSSHLLPIDYKFHPD 138
>gi|351722267|ref|NP_001236982.1| DNA-directed RNA polymerase II subunit RPB7 [Glycine max]
gi|356512183|ref|XP_003524800.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB7-like
[Glycine max]
gi|1173137|sp|P46279.1|RPB7_SOYBN RecName: Full=DNA-directed RNA polymerase II subunit RPB7;
Short=RNA polymerase II subunit B7
gi|170052|gb|AAA34005.1| RNA polymerase II [Glycine max]
gi|255626843|gb|ACU13766.1| unknown [Glycine max]
Length = 176
Score = 50.1 bits (118), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 34/120 (28%), Positives = 56/120 (46%), Gaps = 11/120 (9%)
Query: 1 MFYLSKIEHTLRLPPHLLRLPLNEAIKLELENVFLDKVIANLGLCISIYDIKEIEGGFVY 60
MF+ +E ++L P L + + +L G +++ I+ I G +
Sbjct: 1 MFFHIVLERNMQLHPRYFGRNLRDNLVSKLMKDVEGTCSGRHGFVVAVTGIENIGKGLIR 60
Query: 61 PGEGASTHTVKFRLVVFRPFVGEIIAAKLKESDANGLRLSLGFFED-----IYVPSHLLP 115
G G T VK++ VVFRPF GEI+ A + + +GFF + I+V +HL+P
Sbjct: 61 DGTGFVTFPVKYQCVVFRPFKGEILEAVVTMVN------KMGFFAEAGPVQIFVSNHLIP 114
>gi|405954685|gb|EKC22056.1| DNA-directed RNA polymerase II subunit RPB7, partial [Crassostrea
gigas]
Length = 167
Score = 50.1 bits (118), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 36/148 (24%), Positives = 65/148 (43%), Gaps = 6/148 (4%)
Query: 7 IEHTLRLPPHLLRLPLNEAIKLELENVFLDKVIANLGLCISIYDIKEIEGGFVYPGEGAS 66
+EH + L P L +K +L G I++ I I G + P G
Sbjct: 3 LEHEILLHPRYFGPNLLNIVKQKLFTEVEGTCTGKYGFVIAVTTIDNIGAGTIQPSRGFV 62
Query: 67 THTVKFRLVVFRPFVGEIIAAKLKESDANGLRLSLGFFEDIYVPSHLLPSPSRSEPDPYG 126
+ VK++ +VFRPF GE++ A + + + GL +G +V H +P+ +P+
Sbjct: 63 VYPVKYKAIVFRPFKGEVLDAVVTQVNKVGLFTEIGPLS-CFVSRHSIPANMEFDPNSN- 120
Query: 127 RYEVKWIWEFGDTKYVIDGLDEIKFRVL 154
++ + VI DEI+ +++
Sbjct: 121 ----PPCYKNKEEDEVIQQDDEIRLKIV 144
>gi|296243100|ref|YP_003650587.1| DNA-directed RNA polymerase subunit E' [Thermosphaera aggregans DSM
11486]
gi|296095684|gb|ADG91635.1| DNA-directed RNA polymerase, subunit E' [Thermosphaera aggregans
DSM 11486]
Length = 192
Score = 50.1 bits (118), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 31/116 (26%), Positives = 53/116 (45%), Gaps = 11/116 (9%)
Query: 1 MFYLSKIEHTLRLPPHLLRLPLNEAIKLEL-----------ENVFLDKVIANLGLCISIY 49
M+ + K+ +R+PP PL E EL +N F + + ++I
Sbjct: 1 MYNVIKVRDVVRIPPSKFGRPLEEVALEELREQYEGSVVILKNPFTSEEKKEPSIIVTIL 60
Query: 50 DIKEIEGGFVYPGEGASTHTVKFRLVVFRPFVGEIIAAKLKESDANGLRLSLGFFE 105
+ G + PG+GA+ H V+F +VF PF+ E++ + NGL + LG +
Sbjct: 61 GLSIEPSGKIIPGDGATYHNVEFEALVFHPFLKEVVEGDVVTVTKNGLYVDLGVLD 116
>gi|395646854|ref|ZP_10434714.1| DNA-directed RNA polymerase [Methanofollis liminatans DSM 4140]
gi|395443594|gb|EJG08351.1| DNA-directed RNA polymerase [Methanofollis liminatans DSM 4140]
Length = 191
Score = 50.1 bits (118), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 40/158 (25%), Positives = 74/158 (46%), Gaps = 9/158 (5%)
Query: 1 MFYLSKIEHTLRLPPHLLRLPLNEAIKLELENVFLDKVIANLGLCISIYDIKEIEGGFVY 60
M+Y ++ +R+PPH L L I EL+ + +G+ I++ I + G +
Sbjct: 1 MYYRVTLDDKVRVPPHRLGEDLRNVILDELQKQLEGSIDKEIGIFIAVTKINNVGEGEIV 60
Query: 61 PGEGASTHTVKFRLVVFRPFVGEIIAAKLKESDANGLRLSLGFFEDIYVPSHLLPSPSRS 120
G+GA + V F +V R + E+I ++ E+ + G +SLG + + S +
Sbjct: 61 HGDGAVYYDVTFEALVLRLVLQEVIEGEVVETTSFGAFVSLGPIDAMLHVSQI------- 113
Query: 121 EPDPYGRYEVK-WIWEFGDTKYVIDGLDEIKFRVLSVN 157
D Y Y+ K +TK I + I+ RV++++
Sbjct: 114 -SDDYIAYDEKNNTLNCQETKRSIQVGEAIRCRVVTLS 150
>gi|388502464|gb|AFK39298.1| unknown [Lotus japonicus]
Length = 176
Score = 50.1 bits (118), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 33/120 (27%), Positives = 56/120 (46%), Gaps = 11/120 (9%)
Query: 1 MFYLSKIEHTLRLPPHLLRLPLNEAIKLELENVFLDKVIANLGLCISIYDIKEIEGGFVY 60
MF+ +E ++L P L + + +L G +++ I+ + G +
Sbjct: 1 MFFHIVLERNMQLHPRYFGRNLRDNLVAKLMKDVEGTCSGRHGFVVAVTGIENVGKGLIR 60
Query: 61 PGEGASTHTVKFRLVVFRPFVGEIIAAKLKESDANGLRLSLGFFED-----IYVPSHLLP 115
G G T VK++ VVFRPF GEI+ A + + +GFF + I+V +HL+P
Sbjct: 61 DGTGFVTFPVKYQCVVFRPFKGEILEAVVTMVN------KMGFFAEAGPVQIFVSNHLIP 114
>gi|357133761|ref|XP_003568492.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB7-like
[Brachypodium distachyon]
Length = 177
Score = 50.1 bits (118), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 33/115 (28%), Positives = 55/115 (47%), Gaps = 1/115 (0%)
Query: 1 MFYLSKIEHTLRLPPHLLRLPLNEAIKLELENVFLDKVIANLGLCISIYDIKEIEGGFVY 60
MF+ +E ++L P L + + +L G ++I +++I G +
Sbjct: 1 MFFHIVLERNMQLHPRHFGPHLRDKLVAKLMKDVEGTCSGRHGFVVAITGVEDIGKGLIR 60
Query: 61 PGEGASTHTVKFRLVVFRPFVGEIIAAKLKESDANGLRLSLGFFEDIYVPSHLLP 115
G G T VK++ VVFRPF GEI+ A + + G G + I+V +HL+P
Sbjct: 61 EGTGFVTFPVKYQCVVFRPFKGEILEAVVTMVNKMGFFAEAGPVQ-IFVSNHLIP 114
>gi|353236768|emb|CCA68756.1| probable DNA-directed RNA polymerase II chain Rpb7 [Piriformospora
indica DSM 11827]
Length = 170
Score = 50.1 bits (118), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 38/164 (23%), Positives = 73/164 (44%), Gaps = 10/164 (6%)
Query: 1 MFYLSKIEHTLRLPPHLLRLPLNEAIKLELENVFLDKVIANLGLCISIYDIKEIEGGFVY 60
MF++ ++ HT+ + P + E I+ +L + G I++ +I ++ G V
Sbjct: 1 MFFIKELTHTILMHPSYFGPRMLEIIEAKLHSDVQGTCTGQYGFIIAVLEIIDVGPGIVL 60
Query: 61 PGEGASTHTVKFRLVVFRPFVGEIIAAKLKESDANGLRLSLGFFEDIYVPSHLLPSPSRS 120
PG G + +++ +VF+PF GE++ + N LR GFF ++ P S
Sbjct: 61 PGNGQAEFKTRYKAIVFKPFKGEVLDGVV----TNVLR--AGFFVEVG-PLRCFVSQQLV 113
Query: 121 EPDPYGRYEVK-WIWEFGDTKYVIDGLDEIKFRVLSVNYPSIPI 163
PD R++ + F VI+ +++ +V+ I
Sbjct: 114 HPDM--RFDANAAVPSFSSQDQVIEKDTKVRLKVVGTRVDQTEI 155
>gi|167042375|gb|ABZ07103.1| putative RNA polymerase Rpb7, N-terminal domain protein
[uncultured marine crenarchaeote HF4000_ANIW97M7]
Length = 213
Score = 50.1 bits (118), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 31/89 (34%), Positives = 47/89 (52%)
Query: 1 MFYLSKIEHTLRLPPHLLRLPLNEAIKLELENVFLDKVIANLGLCISIYDIKEIEGGFVY 60
MF +S +E +R+PP L LN+A L++ + V ++LG I I D G +
Sbjct: 1 MFSVSTLEDIVRIPPSLFGTSLNKAAMNILKSKYESMVKSDLGYIIMILDADVEPMGKII 60
Query: 61 PGEGASTHTVKFRLVVFRPFVGEIIAAKL 89
G+GA+ H V F + F P + EII +L
Sbjct: 61 AGDGATFHRVTFDALTFYPKLQEIIYGEL 89
>gi|452209179|ref|YP_007489293.1| DNA-directed RNA polymerase subunit E' [Methanosarcina mazei Tuc01]
gi|452099081|gb|AGF96021.1| DNA-directed RNA polymerase subunit E' [Methanosarcina mazei Tuc01]
Length = 190
Score = 50.1 bits (118), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 30/97 (30%), Positives = 52/97 (53%)
Query: 6 KIEHTLRLPPHLLRLPLNEAIKLELENVFLDKVIANLGLCISIYDIKEIEGGFVYPGEGA 65
K+ T+R+PP LL + IK L +V LG +++Y+I E+ G + G+GA
Sbjct: 2 KLVDTVRIPPTLLGEEIMPTIKNALREKLEGQVDKKLGSLVAVYNIDEVGEGHILVGDGA 61
Query: 66 STHTVKFRLVVFRPFVGEIIAAKLKESDANGLRLSLG 102
+ V F ++F P + EII ++ E+ G+ + +G
Sbjct: 62 VYYDVTFEAIMFYPDLQEIIEGEVVEAVGFGVFIGMG 98
>gi|357476433|ref|XP_003608502.1| DNA-directed RNA polymerase II subunit RPB7 [Medicago truncatula]
gi|217071674|gb|ACJ84197.1| unknown [Medicago truncatula]
gi|355509557|gb|AES90699.1| DNA-directed RNA polymerase II subunit RPB7 [Medicago truncatula]
gi|388514911|gb|AFK45517.1| unknown [Medicago truncatula]
Length = 176
Score = 50.1 bits (118), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 34/120 (28%), Positives = 56/120 (46%), Gaps = 11/120 (9%)
Query: 1 MFYLSKIEHTLRLPPHLLRLPLNEAIKLELENVFLDKVIANLGLCISIYDIKEIEGGFVY 60
MF+ +E ++L P L + + +L G +++ I+ I G +
Sbjct: 1 MFFHIVLERNMQLHPRYFGRNLRDNLVSKLMKDVEGTCSGRHGFVVAVTGIENIGKGIIR 60
Query: 61 PGEGASTHTVKFRLVVFRPFVGEIIAAKLKESDANGLRLSLGFFED-----IYVPSHLLP 115
G G T VK++ VVFRPF GEI+ A + + +GFF + I+V +HL+P
Sbjct: 61 DGTGFVTFPVKYQCVVFRPFKGEILEAVVTMVN------KMGFFAEAGPVQIFVSNHLIP 114
>gi|396472452|ref|XP_003839119.1| hypothetical protein LEMA_P027920.1 [Leptosphaeria maculans JN3]
gi|312215688|emb|CBX95640.1| hypothetical protein LEMA_P027920.1 [Leptosphaeria maculans JN3]
Length = 1244
Score = 50.1 bits (118), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 31/116 (26%), Positives = 57/116 (49%), Gaps = 2/116 (1%)
Query: 1 MFYLSKIEHTLRLPPHLLRLPLNEAIKLELENVFLDKVIANLGLCISIYDIKEIEGGFVY 60
MF+L ++E T++L P + + I EL + + I D EI G V
Sbjct: 1 MFFLKELEKTIQLHPSYFGPLIRQHIHRELLQKEEGSSTGKYAI-VCILDAFEISDGKVM 59
Query: 61 PGEGASTHTVKFRLVVFRPFVGEIIAAKLKESDANGLRLSLGFFEDIYVPSHLLPS 116
PG G++ + V ++ +V+RP+ GE++ + G + G + ++V H++PS
Sbjct: 60 PGSGSAEYVVHYKAIVWRPYKGEVVDGVVVSVLRTGFFVDCGSLQ-VFVGRHMIPS 114
>gi|326497319|dbj|BAK02244.1| predicted protein [Hordeum vulgare subsp. vulgare]
gi|326505504|dbj|BAJ95423.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 177
Score = 50.1 bits (118), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 33/115 (28%), Positives = 55/115 (47%), Gaps = 1/115 (0%)
Query: 1 MFYLSKIEHTLRLPPHLLRLPLNEAIKLELENVFLDKVIANLGLCISIYDIKEIEGGFVY 60
MF+ +E ++L P L + + +L G ++I +++I G +
Sbjct: 1 MFFHIVLERNMQLHPRHFGPHLRDKLVAKLMKDVEGTCSGRHGFVVAITGVEDIGKGLIR 60
Query: 61 PGEGASTHTVKFRLVVFRPFVGEIIAAKLKESDANGLRLSLGFFEDIYVPSHLLP 115
G G T VK++ VVFRPF GEI+ A + + G G + I+V +HL+P
Sbjct: 61 EGTGFVTFPVKYQCVVFRPFKGEILEAVVTMVNKMGFFAEAGPVQ-IFVSNHLIP 114
>gi|326496519|dbj|BAJ94721.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 236
Score = 49.7 bits (117), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 34/120 (28%), Positives = 57/120 (47%), Gaps = 11/120 (9%)
Query: 1 MFYLSKIEHTLRLPPHLLRLPLNEAIKLELENVFLDKVIANLGLCISIYDIKEIEGGFVY 60
MF+ +E ++L P L + + +L G ++I +++I G +
Sbjct: 60 MFFHIVLERNMQLHPRHFGPHLRDKLVAKLMKDVEGTCSGRHGFVVAITGVEDIGKGLIR 119
Query: 61 PGEGASTHTVKFRLVVFRPFVGEIIAAKLKESDANGLRLSLGFFED-----IYVPSHLLP 115
G G T VK++ VVFRPF GEI+ A + + +GFF + I+V +HL+P
Sbjct: 120 EGTGFVTFPVKYQCVVFRPFKGEILEAVVTMVN------KMGFFAEAGPVQIFVSNHLIP 173
>gi|402466458|gb|EJW01941.1| hypothetical protein EDEG_03598 [Edhazardia aedis USNM 41457]
Length = 182
Score = 49.7 bits (117), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 37/140 (26%), Positives = 61/140 (43%), Gaps = 28/140 (20%)
Query: 63 EGASTHTVKFRLVVFRPFVGEIIAAKLKESDANGLRLSLGFFEDIYVPSHLLPSPSRSEP 122
+G TV F ++ F+ F EII AK+++ + L + F VP+ + P
Sbjct: 60 DGLIIPTVNFTILGFKYFESEIIEAKIRKQSVTDIELQIPFL----VPNQKILVKMDCFP 115
Query: 123 D--------PYGRYE--VKWIWEFGDTKYVIDGLDEIKFRVLSVNYPSIPIEQAEGSKPF 172
D P G Y+ + W W++ KY ++++ R+ ++ +G
Sbjct: 116 DDCDYVSVMPKGGYKKCIVWFWQYNGDKYYFKNGEKVRVRIDKID--------PDG---- 163
Query: 173 APMVINGSIDYDGLGPVSWW 192
M I GS GLGP+SWW
Sbjct: 164 --MCIYGSFRETGLGPLSWW 181
>gi|225434800|ref|XP_002282298.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB7 [Vitis
vinifera]
gi|147841138|emb|CAN75204.1| hypothetical protein VITISV_042914 [Vitis vinifera]
gi|297745997|emb|CBI16053.3| unnamed protein product [Vitis vinifera]
Length = 176
Score = 49.7 bits (117), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 34/120 (28%), Positives = 56/120 (46%), Gaps = 11/120 (9%)
Query: 1 MFYLSKIEHTLRLPPHLLRLPLNEAIKLELENVFLDKVIANLGLCISIYDIKEIEGGFVY 60
MF+ +E ++L P L + + +L G ++I I+ + G +
Sbjct: 1 MFFHIVLERNMQLHPRHFGRHLRDNLVAKLVKDVEGTCSGRHGFVVAITGIENVGKGLIR 60
Query: 61 PGEGASTHTVKFRLVVFRPFVGEIIAAKLKESDANGLRLSLGFFED-----IYVPSHLLP 115
G G T VK++ VVFRPF GEI+ A + + +GFF + I+V +HL+P
Sbjct: 61 DGTGFVTFPVKYQCVVFRPFKGEILEAVVTMVN------KMGFFAEAGPVQIFVSNHLIP 114
>gi|342186368|emb|CCC95854.1| unnamed protein product [Trypanosoma congolense IL3000]
Length = 244
Score = 49.7 bits (117), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 30/101 (29%), Positives = 52/101 (51%), Gaps = 1/101 (0%)
Query: 19 RLPLNEAIKLELENVFLDKVIANLGLCISIYDIKEIEGGFVYPGEGASTHTVKFRLVVFR 78
++ +++ + L ++ K+I +LGLC++I ++ G V + T +FR+ VF
Sbjct: 43 QVTVDDVLLHRLTERYVGKMIPSLGLCVAIQELIHHTPGTVRGSAASVWFTAEFRVCVFA 102
Query: 79 PFVGEIIAAKLKESDANGLRLSLGFFEDI-YVPSHLLPSPS 118
P G + A + G+ LSL FF + +VP L SPS
Sbjct: 103 PTPGARLRATISAQTREGIYLSLDFFHFVLFVPGDQLISPS 143
>gi|147797300|emb|CAN78257.1| hypothetical protein VITISV_015144 [Vitis vinifera]
Length = 1252
Score = 49.7 bits (117), Expect = 7e-04, Method: Composition-based stats.
Identities = 20/33 (60%), Positives = 28/33 (84%)
Query: 147 DEIKFRVLSVNYPSIPIEQAEGSKPFAPMVING 179
D+I+F+V SV+Y +P+EQ + SKPFAPMVI+G
Sbjct: 1188 DKIRFQVQSVSYSPVPVEQRKESKPFAPMVISG 1220
>gi|149244114|ref|XP_001526600.1| DNA-directed RNA polymerase II 19 kDa polypeptide [Lodderomyces
elongisporus NRRL YB-4239]
gi|146448994|gb|EDK43250.1| DNA-directed RNA polymerase II 19 kDa polypeptide [Lodderomyces
elongisporus NRRL YB-4239]
Length = 173
Score = 49.7 bits (117), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 32/129 (24%), Positives = 59/129 (45%), Gaps = 13/129 (10%)
Query: 1 MFYLSKIEHTLRLPPHLLRLPLNEAIKLELENVFLDKVIANLGLCISIYDIKEIE--GGF 58
MF+L + L L P +++ ++ +L + G + + D I+ G
Sbjct: 1 MFFLKDLSLNLTLHPSYFGPQMDQYLRDKLLSDVEGTCTGQFGYIVCVLDSMNIDVGKGR 60
Query: 59 VYPGEGASTHTVKFRLVVFRPFVGEIIAAKLKESDANGLRLSLGFFED-----IYVPSHL 113
+ P G + VK+R VV++PF GE++ + + +GFF D ++V +HL
Sbjct: 61 IIPSSGMAEFEVKYRAVVWKPFKGEVVDGVVTTVN------KMGFFADVGPLSVFVSTHL 114
Query: 114 LPSPSRSEP 122
+PS + P
Sbjct: 115 IPSDMKFNP 123
>gi|70927512|ref|XP_736132.1| hypothetical protein [Plasmodium chabaudi chabaudi]
gi|56510408|emb|CAH80794.1| hypothetical protein PC000241.04.0 [Plasmodium chabaudi chabaudi]
Length = 75
Score = 49.7 bits (117), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 39/75 (52%)
Query: 1 MFYLSKIEHTLRLPPHLLRLPLNEAIKLELENVFLDKVIANLGLCISIYDIKEIEGGFVY 60
MF L ++E + + H + I+ L ++DKV+ N GLC+ +YDI EI+ +
Sbjct: 1 MFSLFRMEDVISIEAHFNNDEIKNIIEFLLRTKYVDKVVQNAGLCVGLYDILEIKNKEIL 60
Query: 61 PGEGASTHTVKFRLV 75
G G V FRLV
Sbjct: 61 KGCGTIRLNVIFRLV 75
>gi|294495170|ref|YP_003541663.1| DNA-directed RNA polymerase, subunit E' [Methanohalophilus mahii
DSM 5219]
gi|292666169|gb|ADE36018.1| DNA-directed RNA polymerase, subunit E' [Methanohalophilus mahii
DSM 5219]
Length = 187
Score = 49.3 bits (116), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 33/117 (28%), Positives = 60/117 (51%), Gaps = 8/117 (6%)
Query: 1 MFYLSKIEHTLRLPPHLL----RLPLNEAIKLELENVFLDKVIANLGLCISIYDIKEIEG 56
M+ K+ T+R+ P LL R+ + A+K +LE +V +G ++I DI EI
Sbjct: 1 MYKRMKLVDTVRVAPRLLADDVRVSVKNALKTKLEG----RVDKKIGSVVAITDIDEIGE 56
Query: 57 GFVYPGEGASTHTVKFRLVVFRPFVGEIIAAKLKESDANGLRLSLGFFEDIYVPSHL 113
G + G+GA + F ++F P + E+I ++ E+ G +S+G + + S +
Sbjct: 57 GHILVGDGAVYYDATFEAIMFIPTLQEVIEGEVVETVEFGAFVSIGAMDGLLHVSQI 113
>gi|326426973|gb|EGD72543.1| hypothetical protein PTSG_00566 [Salpingoeca sp. ATCC 50818]
Length = 171
Score = 49.3 bits (116), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 30/102 (29%), Positives = 49/102 (48%)
Query: 1 MFYLSKIEHTLRLPPHLLRLPLNEAIKLELENVFLDKVIANLGLCISIYDIKEIEGGFVY 60
MF+ +EH + LPP L L E+I+ +L K I G +S+ +I +I G +
Sbjct: 1 MFFKLTLEHDVLLPPRFLGPQLAESIRRKLYEDVESKCIGKHGYIVSVIEIVKIGEGEIL 60
Query: 61 PGEGASTHTVKFRLVVFRPFVGEIIAAKLKESDANGLRLSLG 102
G + V +R +VFRP E++ A + G+ +G
Sbjct: 61 VARGETLFPVTYRALVFRPVKNEVVDAIVSTVTKMGIFAEVG 102
>gi|171684353|ref|XP_001907118.1| hypothetical protein [Podospora anserina S mat+]
gi|170942137|emb|CAP67789.1| unnamed protein product [Podospora anserina S mat+]
Length = 249
Score = 49.3 bits (116), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 32/115 (27%), Positives = 55/115 (47%), Gaps = 2/115 (1%)
Query: 1 MFYLSKIEHTLRLPPHLLRLPLNEAIKLELENVFLDKVIANLGLCISIYDIKEIEGGFVY 60
MF+L +E + L P + E + +L + + I+I D ++ G +
Sbjct: 1 MFFLHNLERRVLLHPSYFGKNMTELVTTKLVKDVEGTCTGDYYI-IAIMDTFDLSEGRIL 59
Query: 61 PGEGASTHTVKFRLVVFRPFVGEIIAAKLKESDANGLRLSLGFFEDIYVPSHLLP 115
PG G + TV +R VV+RPF GE++ A + +G + G I+V +H +P
Sbjct: 60 PGSGMAEFTVGYRAVVWRPFKGEVVDAICTSVNQHGFFSNAGPLS-IFVSTHSIP 113
>gi|307594773|ref|YP_003901090.1| DNA-directed RNA polymerase [Vulcanisaeta distributa DSM 14429]
gi|307549974|gb|ADN50039.1| DNA-directed RNA polymerase [Vulcanisaeta distributa DSM 14429]
Length = 196
Score = 48.9 bits (115), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 25/102 (24%), Positives = 57/102 (55%)
Query: 1 MFYLSKIEHTLRLPPHLLRLPLNEAIKLELENVFLDKVIANLGLCISIYDIKEIEGGFVY 60
MF + +E +R+PP PL L ++ +V ++G+ ++I+D++ + G V
Sbjct: 1 MFRVLTLEDYIRIPPSRFGEPLERVAFEVLWGEYVGRVERDVGVYVAIFDVEVSKRGVVI 60
Query: 61 PGEGASTHTVKFRLVVFRPFVGEIIAAKLKESDANGLRLSLG 102
G+GA+ + V+F+ +V+ P + E++ ++ ++ G + +G
Sbjct: 61 FGDGATYNRVRFKALVYTPLINEVVEGEVVRTEDFGAFVRIG 102
>gi|226500588|ref|NP_001149597.1| DNA-directed RNA polymerase II 19 kDa polypeptide [Zea mays]
gi|242056199|ref|XP_002457245.1| hypothetical protein SORBIDRAFT_03g003990 [Sorghum bicolor]
gi|242090461|ref|XP_002441063.1| hypothetical protein SORBIDRAFT_09g019690 [Sorghum bicolor]
gi|194708012|gb|ACF88090.1| unknown [Zea mays]
gi|195628342|gb|ACG36001.1| DNA-directed RNA polymerase II 19 kDa polypeptide [Zea mays]
gi|241929220|gb|EES02365.1| hypothetical protein SORBIDRAFT_03g003990 [Sorghum bicolor]
gi|241946348|gb|EES19493.1| hypothetical protein SORBIDRAFT_09g019690 [Sorghum bicolor]
gi|413945277|gb|AFW77926.1| DNA-directed RNA polymerase II polypeptide [Zea mays]
Length = 177
Score = 48.9 bits (115), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 33/115 (28%), Positives = 55/115 (47%), Gaps = 1/115 (0%)
Query: 1 MFYLSKIEHTLRLPPHLLRLPLNEAIKLELENVFLDKVIANLGLCISIYDIKEIEGGFVY 60
MF+ +E ++L P L + + +L G ++I +++I G +
Sbjct: 1 MFFHIVLERNMQLHPRHFGPHLRDKLVSKLIKDVEGTCSGRHGFVVAITGVEDIGKGLIR 60
Query: 61 PGEGASTHTVKFRLVVFRPFVGEIIAAKLKESDANGLRLSLGFFEDIYVPSHLLP 115
G G T VK++ VVFRPF GEI+ A + + G G + I+V +HL+P
Sbjct: 61 EGTGYVTFPVKYQCVVFRPFKGEILEAVVTMVNKMGFFAEAGPVQ-IFVSNHLIP 114
>gi|91774198|ref|YP_566890.1| DNA-directed RNA polymerase subunit E' [Methanococcoides burtonii
DSM 6242]
gi|91713213|gb|ABE53140.1| DNA-directed RNA polymerase subunit E' [Methanococcoides burtonii
DSM 6242]
Length = 192
Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/113 (27%), Positives = 59/113 (52%)
Query: 1 MFYLSKIEHTLRLPPHLLRLPLNEAIKLELENVFLDKVIANLGLCISIYDIKEIEGGFVY 60
M+ K++ T+R+ P LL + ++K L+ +V LG ++I DI+E+ G +
Sbjct: 1 MYKRMKLKDTIRVAPRLLGEDVGVSVKDALKEKLEGRVDKALGSIVAITDIEEVGEGHIL 60
Query: 61 PGEGASTHTVKFRLVVFRPFVGEIIAAKLKESDANGLRLSLGFFEDIYVPSHL 113
G+GA + V F ++F P + E+I + E+ G +S+G + + S +
Sbjct: 61 VGDGAVYYDVIFEAIIFIPQLQEVIEGLVVETVEFGAFVSIGAMDGLLHVSQI 113
>gi|388582123|gb|EIM22429.1| hypothetical protein WALSEDRAFT_60067 [Wallemia sebi CBS 633.66]
Length = 171
Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 33/128 (25%), Positives = 57/128 (44%), Gaps = 12/128 (9%)
Query: 1 MFYLSK-IEHTLRLPPHLLRLPLNEAIKLELENVFLDKVIANLGLCISIYDIKEIEGGFV 59
MF++ + H L L P + I +L G I++ I + G V
Sbjct: 1 MFFVKHDLTHRLHLHPSYFGPQTMDFINNKLYADVEGTCTGRYGYIIAVLSISDPGSGTV 60
Query: 60 YPGEGASTHTVKFRLVVFRPFVGEIIAAKLKESDANGLRLSLGFFED-----IYVPSHLL 114
PG G + VK+ +V++PF GE++ ++ + +GFF D ++V SHL+
Sbjct: 61 LPGVGTAEFVVKYTAIVYKPFKGEVVDGQVASVN------KMGFFADVGPLQVFVSSHLI 114
Query: 115 PSPSRSEP 122
P + +P
Sbjct: 115 PQDIKFDP 122
>gi|15668573|ref|NP_247371.1| DNA-directed RNA polymerase subunit E' [Methanocaldococcus
jannaschii DSM 2661]
gi|2500642|sp|Q57840.1|RPOE1_METJA RecName: Full=DNA-directed RNA polymerase subunit E'
gi|17943304|pdb|1GO3|E Chain E, Structure Of An Archeal Homolog Of The Eukaryotic Rna
Polymerase Ii Rpb4RPB7 COMPLEX
gi|17943306|pdb|1GO3|M Chain M, Structure Of An Archeal Homolog Of The Eukaryotic Rna
Polymerase Ii Rpb4RPB7 COMPLEX
gi|1591102|gb|AAB98387.1| DNA-directed RNA polymerase, subunit E' (rpoE1) [Methanocaldococcus
jannaschii DSM 2661]
Length = 187
Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 44/176 (25%), Positives = 86/176 (48%), Gaps = 12/176 (6%)
Query: 1 MFYLSKIEHTLRLPPHLLRLPLNEAIKLELENVFLDKVIANLGLCISIYDIKEIEGGFVY 60
M+ + +I +++PP L E +K L + ++ ++G +SI D+K+I G V
Sbjct: 1 MYKILEIADVVKVPPEEFGKDLKETVKKILMEKYEGRLDKDVGFVLSIVDVKDIGEGKVV 60
Query: 61 PGEGASTHTVKFRLVVFRPFVGEIIAAKLKESDANGLRLSLGFFEDIYVPSHLLPSPSRS 120
G+G++ H V F +V+ P + E+I ++ + G + LG + + S ++
Sbjct: 61 HGDGSAYHPVVFETLVYIPEMYELIEGEVVDVVEFGSFVRLGPLDGLIHVSQIM------ 114
Query: 121 EPDPYGRYEVKWIWEFG-DTKYVIDGLDEIKFRVLSVNYPSIPIEQAEGSKPFAPM 175
D Y Y+ K G +T V++ D ++ R++++ S+ E+ GSK M
Sbjct: 115 --DDYVSYDPKREAIIGKETGKVLEIGDYVRARIVAI---SLKAERKRGSKIALTM 165
>gi|358054534|dbj|GAA99460.1| hypothetical protein E5Q_06159 [Mixia osmundae IAM 14324]
Length = 207
Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 45/195 (23%), Positives = 80/195 (41%), Gaps = 23/195 (11%)
Query: 1 MFYLSKIEHTLRLPPHLLRLPLNEAIKLELENVFLDKVIANLGLCISIYDIKEIEG---- 56
MF+L + HT+ L P ++ +K +L G +++ + EG
Sbjct: 1 MFFLKNLTHTINLHPSYFGANTSDYVKHKLFEDVSGTCSGLHGYIVAVLVVGSGEGPFKP 60
Query: 57 -GFVYPGEGASTHTVKFRLVVFRPFVGEIIAAKLKESDANGLRLSLGFFEDIYVPSHLLP 115
G + PG G + V + VVFRPF GE++ + + G + +G ++V +HL+P
Sbjct: 61 QGTIQPGTGMAEFEVPYLAVVFRPFKGEVLDGVVTTVNKMGFFVEVGALT-VFVSAHLMP 119
Query: 116 SPSRSEPDPYGRYEVKWIWEFGDTKYVIDGLDEIKFRVLSVNYPSIPIEQAEGSKPFAPM 175
+ D R+ GD I ++ +++ + I FA
Sbjct: 120 GDMKFSEDSPPRFS-----RMGDDSMAIQKDVVVRVKIVGTRIDATEI--------FAI- 165
Query: 176 VINGSIDYDGLGPVS 190
G+I D LGP++
Sbjct: 166 ---GTIKEDYLGPLA 177
>gi|115463767|ref|NP_001055483.1| Os05g0400700 [Oryza sativa Japonica Group]
gi|50878367|gb|AAT85142.1| putative RNA polymerase II subunit 5 [Oryza sativa Japonica Group]
gi|113579034|dbj|BAF17397.1| Os05g0400700 [Oryza sativa Japonica Group]
gi|125552268|gb|EAY97977.1| hypothetical protein OsI_19896 [Oryza sativa Indica Group]
gi|215704281|dbj|BAG93121.1| unnamed protein product [Oryza sativa Japonica Group]
gi|218196761|gb|EEC79188.1| hypothetical protein OsI_19893 [Oryza sativa Indica Group]
gi|222631528|gb|EEE63660.1| hypothetical protein OsJ_18478 [Oryza sativa Japonica Group]
Length = 177
Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/115 (27%), Positives = 55/115 (47%), Gaps = 1/115 (0%)
Query: 1 MFYLSKIEHTLRLPPHLLRLPLNEAIKLELENVFLDKVIANLGLCISIYDIKEIEGGFVY 60
MF+ +E ++L P L + + +L G ++I ++++ G +
Sbjct: 1 MFFHIVLERNMQLHPRHFGPHLRDKLVSKLIKDVEGTCSGRHGFVVAITGVEDVGKGLIR 60
Query: 61 PGEGASTHTVKFRLVVFRPFVGEIIAAKLKESDANGLRLSLGFFEDIYVPSHLLP 115
G G T VK++ VVFRPF GEI+ A + + G G + I+V +HL+P
Sbjct: 61 EGTGYVTFPVKYQCVVFRPFKGEILEAVVTMVNKMGFFAEAGPVQ-IFVSNHLIP 114
>gi|448519863|ref|XP_003868179.1| Rpb7 protein [Candida orthopsilosis Co 90-125]
gi|354544173|emb|CCE40896.1| hypothetical protein CPAR2_109340 [Candida parapsilosis]
gi|380352518|emb|CCG22744.1| Rpb7 protein [Candida orthopsilosis]
Length = 173
Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/129 (24%), Positives = 59/129 (45%), Gaps = 13/129 (10%)
Query: 1 MFYLSKIEHTLRLPPHLLRLPLNEAIKLELENVFLDKVIANLGLCISIYDIKEIE--GGF 58
MF+L + L L P +++ ++ +L + G + + D I+ G
Sbjct: 1 MFFLKDLSLNLTLHPSYFGPQMDQFLRDKLLSDVEGTCTGQFGYIVCVLDSMNIDVGKGR 60
Query: 59 VYPGEGASTHTVKFRLVVFRPFVGEIIAAKLKESDANGLRLSLGFFED-----IYVPSHL 113
+ P G + VK+R VV++PF GE++ + + +GFF D ++V +HL
Sbjct: 61 IIPTTGMAEFEVKYRAVVWKPFKGEVVDGVVTTVN------KMGFFADVGPLSVFVSTHL 114
Query: 114 LPSPSRSEP 122
+PS + P
Sbjct: 115 IPSDMKFNP 123
>gi|221488256|gb|EEE26470.1| DNA-directed RNA polymerase II 19 kDa polypeptide, putative
[Toxoplasma gondii GT1]
gi|221508765|gb|EEE34334.1| DNA-directed RNA polymerase II 19 kDa polypeptide, putative
[Toxoplasma gondii VEG]
Length = 207
Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 46/189 (24%), Positives = 78/189 (41%), Gaps = 20/189 (10%)
Query: 1 MFYLSKIEHTLRLPPHLLRLPLNEAIKLELENVFLDKVIANLGLCISIYDIKEIEGGFVY 60
MF++ + H + L P L + ++ L K + NLG I + I +E G V
Sbjct: 1 MFFVVEQWHNVALRPAQLGRRYTQYVETLLRQQVEGKCLHNLGYIICVIRIVHMEAGRVQ 60
Query: 61 PGEGASTHTVKFRLVVFRPFVGEIIAAKLKESDANGLRLSLGFFEDIYVPSHLLPSPSRS 120
G G +++ + F+PF E++ A + + + GL G + + L PS
Sbjct: 61 DGTGMVIVAARYQAIAFKPFKDEVLDAVITDVNKLGLFAQCGPLKVFVSRASLPPSFVYQ 120
Query: 121 EPDPYGRYEVKWIWEFGDTKYVIDGLDEIKFRVLSVNYPSIPIEQAEGSKPFAPMVINGS 180
+ G G+ + +D +I+ R+L V Y S+ + FA IN S
Sbjct: 121 DDSAVG------CMTDGEVELRVD--SDIRLRLLGVRYDSMNL--------FAIATINES 164
Query: 181 IDYDGLGPV 189
LGP+
Sbjct: 165 Y----LGPI 169
>gi|378733137|gb|EHY59596.1| DNA-directed RNA polymerase II subunit G [Exophiala dermatitidis
NIH/UT8656]
Length = 169
Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 36/130 (27%), Positives = 58/130 (44%), Gaps = 16/130 (12%)
Query: 1 MFYLSKIEHTLRLPPHLLRLPLNEAIKLELENVFLDKVIANL-GLC------ISIYDIKE 53
MF+L +E + + P ++E +K D++ A+L G C + I DI
Sbjct: 1 MFFLRYLEREISIHPSFFGNSVHERLK--------DQLYADLEGSCNGEYYIVCIMDIYN 52
Query: 54 IEGGFVYPGEGASTHTVKFRLVVFRPFVGEIIAAKLKESDANGLRLSLGFFEDIYVPSHL 113
I G V PG G + T+ +R ++++PF GE I + G+ G ++V
Sbjct: 53 ISAGRVRPGSGDAHFTILYRAILWKPFKGETIDCAVSSIKPQGVFCEAGPLT-VFVSKLH 111
Query: 114 LPSPSRSEPD 123
LP R PD
Sbjct: 112 LPPDMRHNPD 121
>gi|363752353|ref|XP_003646393.1| hypothetical protein Ecym_4540 [Eremothecium cymbalariae
DBVPG#7215]
gi|356890028|gb|AET39576.1| hypothetical protein Ecym_4540 [Eremothecium cymbalariae
DBVPG#7215]
Length = 171
Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 35/135 (25%), Positives = 59/135 (43%), Gaps = 7/135 (5%)
Query: 1 MFYLSKIEHTLRLPPHLLRLPLNEAIKLELENVFLDKVIANLGLCISIYDIK--EIEGGF 58
MF+ + + L P + E +K +L G + + D + EIE G
Sbjct: 1 MFFFKDLSLNITLHPSYFGPRMREYLKTKLLQEVEGTCTGKFGYILCVLDCENIEIERGR 60
Query: 59 VYPGEGASTHTVKFRLVVFRPFVGEIIAAKLKESDANGLRLSLGFFEDIYVPSHLLPSP- 117
+ P +G++ TVK+R VV++PF GE++ + G + +G ++V L+P
Sbjct: 61 ILPTDGSAEFTVKYRAVVWKPFKGEVVDGIVSSCTNLGFEVDVGPL-SVFVSPFLMPDDL 119
Query: 118 ---SRSEPDPYGRYE 129
S S P Y E
Sbjct: 120 TFNSGSNPPSYQSSE 134
>gi|320582151|gb|EFW96369.1| RNA polymerase II subunit [Ogataea parapolymorpha DL-1]
Length = 172
Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 33/130 (25%), Positives = 60/130 (46%), Gaps = 14/130 (10%)
Query: 1 MFYLSKIEHTLRLPPHLLRLPLNEAIKLELENVFLDKVIANLGLCISIYDIKEIE--GGF 58
MF++ + L L P +N+ ++ +L G I + D I+ G
Sbjct: 1 MFFIKDLSLNLTLHPSYFGPQMNQYLQQKLLTDVEGTCTGQFGYIICVLDSMSIDVGKGK 60
Query: 59 VYPGE-GASTHTVKFRLVVFRPFVGEIIAAKLKESDANGLRLSLGFFED-----IYVPSH 112
+ PG+ G + VK+R VV++PF GE++ A + + ++GFF D +++ H
Sbjct: 61 IVPGQQGYAEFEVKYRAVVWKPFKGEVVDAIVSSVN------NMGFFADVGPLSVFISKH 114
Query: 113 LLPSPSRSEP 122
L+P + P
Sbjct: 115 LIPKDMKYTP 124
>gi|302687740|ref|XP_003033550.1| hypothetical protein SCHCODRAFT_234509 [Schizophyllum commune H4-8]
gi|300107244|gb|EFI98647.1| hypothetical protein SCHCODRAFT_234509 [Schizophyllum commune H4-8]
Length = 167
Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/128 (22%), Positives = 59/128 (46%), Gaps = 14/128 (10%)
Query: 1 MFYLSKIEHTLRLPPHLLRLPLNEAIKLELENVFLDKVIANLGLCISIYDIKEIEGGFVY 60
MF++ ++ H++ L P + ++ +L G I++ I +I G V
Sbjct: 1 MFFIKELTHSILLHPSFFGPQMTSFLEAKLYADVEGTCSGRFGYIIAVVSILDIGKGMVM 60
Query: 61 PGEGASTHTVKFRLVVFRPFVGEIIAAKLKESDANGLRLSLGFFED-----IYVPSHLLP 115
G G + ++R +VF+PF GE++ +G+ ++GFF D ++V L+
Sbjct: 61 SGSGQAEFITRYRAIVFKPFKGEVV---------DGVVNNMGFFADVGPLTVFVSHQLIH 111
Query: 116 SPSRSEPD 123
+ +P+
Sbjct: 112 PDMKFDPN 119
>gi|123975905|ref|XP_001330423.1| RNA polymerase Rpb7, N-terminal domain containing protein
[Trichomonas vaginalis G3]
gi|121896651|gb|EAY01797.1| RNA polymerase Rpb7, N-terminal domain containing protein
[Trichomonas vaginalis G3]
Length = 182
Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 35/123 (28%), Positives = 62/123 (50%), Gaps = 1/123 (0%)
Query: 1 MFYLSKIEHTLRLPPHLLRLPLNEAIKLELENVFLDKVIANLGLCISIYDIKEIEGGFVY 60
MF+ ++EH L+L P L ++ I+ +L++ + + GL + I I EI G V
Sbjct: 11 MFFEVELEHQLKLLPIFLSQGTSQTIEKQLKHQKEGQFMLGKGLILKITKIIEIGKGRVS 70
Query: 61 PGEGASTHTVKFRLVVFRPFVGEIIAAKLKESDANGLRLSLGFFEDIYVPSHLLPSPSRS 120
G ++++VKF+ +V RP+ +I AK+ + + + G + VP LL
Sbjct: 71 SRTGCASYSVKFKALVLRPYEDLVIDAKIMILNEFAIMANAGPL-TVAVPKTLLEKDYDF 129
Query: 121 EPD 123
EP+
Sbjct: 130 EPE 132
>gi|237832997|ref|XP_002365796.1| DNA-directed RNA polymerase II subunit RPB7, putative [Toxoplasma
gondii ME49]
gi|211963460|gb|EEA98655.1| DNA-directed RNA polymerase II subunit RPB7, putative [Toxoplasma
gondii ME49]
Length = 207
Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 46/189 (24%), Positives = 78/189 (41%), Gaps = 20/189 (10%)
Query: 1 MFYLSKIEHTLRLPPHLLRLPLNEAIKLELENVFLDKVIANLGLCISIYDIKEIEGGFVY 60
MF++ + H + L P L + ++ L K + NLG I + I +E G V
Sbjct: 1 MFFVVEQWHNVALRPAQLGRRYTQYVETLLRQQVEGKCLHNLGYIICVIRIVHMEAGRVQ 60
Query: 61 PGEGASTHTVKFRLVVFRPFVGEIIAAKLKESDANGLRLSLGFFEDIYVPSHLLPSPSRS 120
G G +++ + F+PF E++ A + + + GL G + + L PS
Sbjct: 61 DGTGMVIVAARYQAIAFKPFKDEVLDAVITDVNKLGLFAQCGPLKVFVSRASLPPSFVYQ 120
Query: 121 EPDPYGRYEVKWIWEFGDTKYVIDGLDEIKFRVLSVNYPSIPIEQAEGSKPFAPMVINGS 180
+ G G+ + +D +I+ R+L V Y S+ + FA IN S
Sbjct: 121 DDSAVG------CMTDGEVELRVD--SDIRLRLLGVRYDSMNL--------FAIATINES 164
Query: 181 IDYDGLGPV 189
LGP+
Sbjct: 165 Y----LGPI 169
>gi|430814255|emb|CCJ28493.1| unnamed protein product [Pneumocystis jirovecii]
Length = 150
Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 47/85 (55%), Gaps = 3/85 (3%)
Query: 40 ANLGLCISIYDIKEIE--GGFVYPGEGASTHTVKFRLVVFRPFVGEIIAAKLKESDANGL 97
N G I + D +I+ G + PG+G + V ++ VV+RPF GE++ A + + G
Sbjct: 19 GNYGYIICVLDSNKIDIGKGRIVPGKGEAEFEVGYKAVVWRPFRGEVLDAIVSTVNKMGF 78
Query: 98 RLSLGFFEDIYVPSHLLPSPSRSEP 122
+G F I+V SHL+PS + +P
Sbjct: 79 FADVGPFS-IFVSSHLIPSDLKFDP 102
>gi|224002987|ref|XP_002291165.1| 19kDa subunit of RNA polymerase [Thalassiosira pseudonana CCMP1335]
gi|220972941|gb|EED91272.1| 19kDa subunit of RNA polymerase [Thalassiosira pseudonana CCMP1335]
Length = 183
Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 34/126 (26%), Positives = 60/126 (47%), Gaps = 21/126 (16%)
Query: 1 MFYLSKIEHTLRLPP----HLLRLPLNEAIKLELENVFLDKVIANLGLCISIYDI--KEI 54
MFY+ +EH + L P LR + +K E+E + L AN G +++ ++ ++I
Sbjct: 1 MFYVKTLEHEIELEPIHFGQKLRATIVRLLKEEVEGLAL----ANYGFVVNVIEVPEEQI 56
Query: 55 EGGFVYPGEGASTHTVKFRLVVFRPFVGEIIAAKLKESDANGLRLSLGFFE-----DIYV 109
G + G VK+ ++ RPF+ E++ A + + + LGFF I+V
Sbjct: 57 RSGIIEYDTGNVVFYVKYTALLLRPFINEVVDATVAQCN------ELGFFAYVGPLRIFV 110
Query: 110 PSHLLP 115
H +P
Sbjct: 111 SKHSMP 116
>gi|256072766|ref|XP_002572705.1| DNA-directed rna polymerase II 19 kD polypeptide rpb7 [Schistosoma
mansoni]
gi|353231053|emb|CCD77471.1| putative dna-directed rna polymerase II 19 kD polypeptide rpb7
[Schistosoma mansoni]
Length = 194
Score = 48.1 bits (113), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 31/122 (25%), Positives = 55/122 (45%), Gaps = 4/122 (3%)
Query: 6 KIEHTLRLPPHLLRLPLNEAIKLELENVFLDKVIANLGLCISIYDIKEIEGGFVYPGEGA 65
K+EH + L P L E +K +L + G I++ +I+ I G + P G
Sbjct: 29 KLEHEILLHPKYFGPNLTETVKTKLFSDVEGTCSGKYGFIIAVTNIEHIGAGIIQPNRGF 88
Query: 66 STHTVKFRLVVFRPFVGEIIAAKLKESDANGLRLSLG----FFEDIYVPSHLLPSPSRSE 121
+ + +R +V+RPF GE++ A + + G+ G F VPS++ + +
Sbjct: 89 VQYRIVYRAIVYRPFKGEVVDAIVTQVTKVGVFAEAGPLTIFISKYSVPSNIKFEGAETT 148
Query: 122 PD 123
D
Sbjct: 149 TD 150
>gi|407462897|ref|YP_006774214.1| DNA-directed RNA polymerase subunit E' [Candidatus Nitrosopumilus
koreensis AR1]
gi|407046519|gb|AFS81272.1| DNA-directed RNA polymerase subunit E' [Candidatus Nitrosopumilus
koreensis AR1]
Length = 198
Score = 48.1 bits (113), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 46/89 (51%)
Query: 1 MFYLSKIEHTLRLPPHLLRLPLNEAIKLELENVFLDKVIANLGLCISIYDIKEIEGGFVY 60
MF +S + +R+PP L L +A L+ + + A+LG I I D K E G +
Sbjct: 1 MFSISTLVDVVRIPPSLFGTTLKKAAVNILKEKYESMINADLGYIIMILDAKVDEMGKMI 60
Query: 61 PGEGASTHTVKFRLVVFRPFVGEIIAAKL 89
G+G + H V+F + F P + EI+ ++
Sbjct: 61 AGDGGTFHRVQFEALTFYPKLQEIVQGEI 89
>gi|161528743|ref|YP_001582569.1| DNA-directed RNA polymerase subunit E' [Nitrosopumilus maritimus
SCM1]
gi|160340044|gb|ABX13131.1| DNA-directed RNA polymerase [Nitrosopumilus maritimus SCM1]
Length = 198
Score = 48.1 bits (113), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 46/89 (51%)
Query: 1 MFYLSKIEHTLRLPPHLLRLPLNEAIKLELENVFLDKVIANLGLCISIYDIKEIEGGFVY 60
MF +S + +R+PP L L +A L+ + + A+LG I I D K E G +
Sbjct: 1 MFSISTLVDVVRIPPSLFGTTLKKAAVNILKEKYESMINADLGYIIMILDAKVDEMGKMI 60
Query: 61 PGEGASTHTVKFRLVVFRPFVGEIIAAKL 89
G+G + H V+F + F P + EI+ ++
Sbjct: 61 AGDGGTFHRVQFEALTFYPKLQEIVQGEI 89
>gi|154149792|ref|YP_001403410.1| DNA-directed RNA polymerase subunit E' [Methanoregula boonei 6A8]
gi|153998344|gb|ABS54767.1| DNA-directed RNA polymerase [Methanoregula boonei 6A8]
Length = 213
Score = 48.1 bits (113), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/102 (28%), Positives = 54/102 (52%)
Query: 1 MFYLSKIEHTLRLPPHLLRLPLNEAIKLELENVFLDKVIANLGLCISIYDIKEIEGGFVY 60
M+Y +E +R+PP+ L L++ I L+ + LG+ I++ ++ + G +
Sbjct: 1 MYYKMTLEDKVRVPPNRLGEKLDKVILEVLQEQLEGSIDKELGVFIAVTKVEHVGEGEIV 60
Query: 61 PGEGASTHTVKFRLVVFRPFVGEIIAAKLKESDANGLRLSLG 102
PG+G + VKF +V R + E+I + E+ + G +SLG
Sbjct: 61 PGDGGVYYDVKFEGLVLRLALQEVIEGIVVETTSFGAFISLG 102
>gi|164428721|ref|XP_001728481.1| hypothetical protein NCU11197 [Neurospora crassa OR74A]
gi|157072254|gb|EDO65390.1| conserved hypothetical protein [Neurospora crassa OR74A]
Length = 120
Score = 48.1 bits (113), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/56 (39%), Positives = 33/56 (58%)
Query: 63 EGASTHTVKFRLVVFRPFVGEIIAAKLKESDANGLRLSLGFFEDIYVPSHLLPSPS 118
+ A + +F +VVFRPF E+I A++ G+ L + FF DI+VP+ LP S
Sbjct: 63 KSAFSSAFEFEMVVFRPFKHEVILARITHQTEEGIYLGMDFFNDIFVPAAELPDNS 118
>gi|168056096|ref|XP_001780058.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162668556|gb|EDQ55161.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 177
Score = 48.1 bits (113), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 33/130 (25%), Positives = 58/130 (44%), Gaps = 1/130 (0%)
Query: 1 MFYLSKIEHTLRLPPHLLRLPLNEAIKLELENVFLDKVIANLGLCISIYDIKEIEGGFVY 60
MF+ ++ L+L P L + + +L G +++ ++ I G +
Sbjct: 1 MFFHIYLDRNLQLHPRHFGPHLRDKLIAKLIQDVEGTCSGRHGFVVAVTAVETIGSGLIR 60
Query: 61 PGEGASTHTVKFRLVVFRPFVGEIIAAKLKESDANGLRLSLGFFEDIYVPSHLLPSPSRS 120
G G T VK++ VVFRPF GEI+ + + + G G + I+V +HL+P
Sbjct: 61 DGTGFVTFPVKYQCVVFRPFKGEILESVVTMVNKMGFFAEAGPVQ-IFVSNHLIPDDMAF 119
Query: 121 EPDPYGRYEV 130
+ D Y+
Sbjct: 120 QSDDVPNYKT 129
>gi|320592229|gb|EFX04668.1| RNA polymerase 2 subunit 7 [Grosmannia clavigera kw1407]
Length = 144
Score = 48.1 bits (113), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/96 (31%), Positives = 44/96 (45%), Gaps = 1/96 (1%)
Query: 1 MFYLSKIEHTLRLPPHLLRLPLNEAIKLELENVFLDKVIANLGLCISIYDIKEIEGGFVY 60
MF+L +E + L P ++E + +L N ISI D +I G +
Sbjct: 1 MFFLHNLERRVTLHPSYFGRNMHELVTTKLLKDVEGTCAGNY-YIISIMDTFDISAGKIL 59
Query: 61 PGEGASTHTVKFRLVVFRPFVGEIIAAKLKESDANG 96
PG G + TV +R VV+RPF GE + + D N
Sbjct: 60 PGNGLAEFTVGYRAVVWRPFKGETMIPSQVKYDPNA 95
>gi|401408717|ref|XP_003883807.1| putative DNA-directed RNA polymerase II subunit RPB7 [Neospora
caninum Liverpool]
gi|325118224|emb|CBZ53775.1| putative DNA-directed RNA polymerase II subunit RPB7 [Neospora
caninum Liverpool]
Length = 209
Score = 48.1 bits (113), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 46/189 (24%), Positives = 77/189 (40%), Gaps = 20/189 (10%)
Query: 1 MFYLSKIEHTLRLPPHLLRLPLNEAIKLELENVFLDKVIANLGLCISIYDIKEIEGGFVY 60
MF++ + H + L P L + + L K + NLG I + I +E G V
Sbjct: 1 MFFVVEQWHNVALRPAQLGRRYTQYVDTLLRQQVEGKCLHNLGYIICVIRIVHMEAGRVQ 60
Query: 61 PGEGASTHTVKFRLVVFRPFVGEIIAAKLKESDANGLRLSLGFFEDIYVPSHLLPSPSRS 120
G G +++ + F+PF E++ A + + + GL G + + L PS
Sbjct: 61 DGTGMVIVAARYQAIAFKPFKDEVLDAVITDVNKLGLFAQCGPLKVFVSRASLPPSFVYQ 120
Query: 121 EPDPYGRYEVKWIWEFGDTKYVIDGLDEIKFRVLSVNYPSIPIEQAEGSKPFAPMVINGS 180
+ G G+ + +D +I+ R+L V Y S+ + FA IN S
Sbjct: 121 DDSAVG------CMTDGEVELRVD--SDIRLRLLGVRYDSMNL--------FAIATINES 164
Query: 181 IDYDGLGPV 189
LGP+
Sbjct: 165 F----LGPI 169
>gi|386874922|ref|ZP_10117141.1| DNA-directed RNA polymerase [Candidatus Nitrosopumilus salaria
BD31]
gi|386807285|gb|EIJ66685.1| DNA-directed RNA polymerase [Candidatus Nitrosopumilus salaria
BD31]
Length = 198
Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 46/89 (51%)
Query: 1 MFYLSKIEHTLRLPPHLLRLPLNEAIKLELENVFLDKVIANLGLCISIYDIKEIEGGFVY 60
MF +S + +R+PP L L +A L+ + + A+LG I I D K E G +
Sbjct: 1 MFSISTLVDVVRIPPSLFGTTLKKAAVNILKEKYESMINADLGYIIMILDAKVDEMGKMI 60
Query: 61 PGEGASTHTVKFRLVVFRPFVGEIIAAKL 89
G+G + H V+F + F P + EI+ ++
Sbjct: 61 AGDGGTFHKVEFEALTFYPKLQEIVQGEI 89
>gi|302754896|ref|XP_002960872.1| hypothetical protein SELMODRAFT_75793 [Selaginella moellendorffii]
gi|302767440|ref|XP_002967140.1| hypothetical protein SELMODRAFT_87027 [Selaginella moellendorffii]
gi|300165131|gb|EFJ31739.1| hypothetical protein SELMODRAFT_87027 [Selaginella moellendorffii]
gi|300171811|gb|EFJ38411.1| hypothetical protein SELMODRAFT_75793 [Selaginella moellendorffii]
Length = 177
Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 38/168 (22%), Positives = 69/168 (41%), Gaps = 17/168 (10%)
Query: 1 MFYLSKIEHTLRLPPHLLRLPLNEAIKLELENVFLDKVIANLGLCISIYDIKEIEGGFVY 60
MF+ ++E L+L P L + + +L + G +++ + I G +
Sbjct: 1 MFFHIRLERNLQLHPRFFGPQLRDKLVEKLIHDVEGTCSGRHGFVVAVTGVDTIGKGLIR 60
Query: 61 PGEGASTHTVKFRLVVFRPFVGEIIAAKLKESDANGLRLSLGFFED-----IYVPSHLLP 115
G G T + ++ VVFRPF GEI+ + L +GFF + I+V +HL+P
Sbjct: 61 DGTGYVTFPIHYQCVVFRPFKGEILEGVVT------LVNKMGFFAEAGPVQIFVSNHLIP 114
Query: 116 SPSRSEPDPYGRYEVKWIWEFGDTKYVIDGLDEIKFRVLSVNYPSIPI 163
+ YE D+ I E++ +++ + I
Sbjct: 115 DDMSFQSGDVPCYETS------DSSVRIQKDSEVRLKIVGTRVDATEI 156
>gi|241176966|ref|XP_002399817.1| DNA-directed RNA polymerase subunit E', putative [Ixodes
scapularis]
gi|215495205|gb|EEC04846.1| DNA-directed RNA polymerase subunit E', putative [Ixodes
scapularis]
Length = 173
Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 36/158 (22%), Positives = 66/158 (41%), Gaps = 24/158 (15%)
Query: 6 KIEHTLRLPPHLLRLPLNEAIKLELENVFLDKVIANLGLCISIYDIKEIEGGFVYPGEGA 65
++H + L P L E +K +L G +++ I I G + PG G
Sbjct: 4 SLDHEILLHPRYFGPQLEETVKQKLYAEVEGTCTGKYGFVVAVMTIDNIGAGLIQPGRGF 63
Query: 66 STHTVKFRLVVFRPFVGEIIAAKLKE---------SDANGLRLSLGFFEDIYVPSHLLPS 116
+ V++ +VFRPF GE++ A + + D + + +S F+ I PS +
Sbjct: 64 VVYPVRYTAIVFRPFKGEVLDAVVTQVNKVSGVGAPDTDSVCIS---FQSI--PSDMQFD 118
Query: 117 PSRSEPDPYGRYEVKWIWEFGDTKYVIDGLDEIKFRVL 154
P+ + P + D +I DEI+ +++
Sbjct: 119 PNSNPP----------CYRTQDEDVIIQQDDEIRLKIV 146
>gi|145483751|ref|XP_001427898.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124394981|emb|CAK60500.1| unnamed protein product [Paramecium tetraurelia]
Length = 181
Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 38/165 (23%), Positives = 75/165 (45%), Gaps = 29/165 (17%)
Query: 37 KVIANLGLCISIYDIKEIEGGFVYPGEGASTHTVKFRLVVFRPFVGEIIAAKLKESDANG 96
K + N G CI + IK +G + +G ++V ++ F+PF E++ + +S G
Sbjct: 36 KPLKNYGFCIKVLGIKTSDG---HIQDGDILYSVIIEILSFQPFQSELVYGTIFKSSKEG 92
Query: 97 LRLSLGFFED---------IYVPSHLLPSPSRSEPDPYGRYEVKWIWEFGDTKYVIDGLD 147
L++ F E+ +VP L + E WI + + + +
Sbjct: 93 LKIK--FLENNNNDKQYLVCFVPKDQLLNARFDEGKQL------WICNYEEINFFYLLGE 144
Query: 148 EIKFRVLSVNYPSIPIEQAEGSKPFAPMVINGSIDYDGLGPVSWW 192
E++F+V S+N+ + ++Q + +I G ++ GLG ++WW
Sbjct: 145 EVRFKVHSLNFDT--VDQMD-------QIIIGRMNESGLGGLTWW 180
>gi|407465243|ref|YP_006776125.1| DNA-directed RNA polymerase subunit E' [Candidatus Nitrosopumilus
sp. AR2]
gi|407048431|gb|AFS83183.1| DNA-directed RNA polymerase subunit E' [Candidatus Nitrosopumilus
sp. AR2]
Length = 198
Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 46/89 (51%)
Query: 1 MFYLSKIEHTLRLPPHLLRLPLNEAIKLELENVFLDKVIANLGLCISIYDIKEIEGGFVY 60
MF +S + +R+PP L L +A L+ + + A+LG I I D K E G +
Sbjct: 1 MFSISTLVDVVRIPPSLFGTTLKKAAVNILKEKYESMINADLGYIIMILDAKVDEMGKMI 60
Query: 61 PGEGASTHTVKFRLVVFRPFVGEIIAAKL 89
G+G + H V+F + F P + EI+ ++
Sbjct: 61 AGDGGTFHKVEFEALTFYPKLQEIVQGEI 89
>gi|397575684|gb|EJK49830.1| hypothetical protein THAOC_31253 [Thalassiosira oceanica]
Length = 183
Score = 47.8 bits (112), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 33/122 (27%), Positives = 56/122 (45%), Gaps = 13/122 (10%)
Query: 1 MFYLSKIEHTLRLPPHLLRLPLNEAIKLELENVFLDKVIANLGLCISIYDI--KEIEGGF 58
MFY+ +EH + L P L + I L+ +AN G +++ ++ ++I G
Sbjct: 1 MFYVKMLEHEIELEPIHFGQKLKDTIVRLLKEEVEGLALANYGFVVNVIEVPEEQIRSGV 60
Query: 59 VYPGEGASTHTVKFRLVVFRPFVGEIIAAKLKESDANGLRLSLGFFE-----DIYVPSHL 113
+ G VK+ ++ RPFV E+I A + + + LGFF I+V H
Sbjct: 61 IEYDTGNVVFYVKYTALMLRPFVNEVIDATVAQCN------ELGFFAYVGPLRIFVSKHS 114
Query: 114 LP 115
+P
Sbjct: 115 MP 116
>gi|440632114|gb|ELR02033.1| DNA-directed RNA polymerase II subunit G [Geomyces destructans
20631-21]
Length = 171
Score = 47.8 bits (112), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 46/187 (24%), Positives = 75/187 (40%), Gaps = 20/187 (10%)
Query: 1 MFYLSKIEHTLRLPPHLLRLPLNEAIKLELENVFLDKVIANLGLCISIYDIKEIEGGFVY 60
MF+L +E + L P ++E + +L + ++ IS+ D + G +
Sbjct: 1 MFFLHNLERQVTLHPSYFGKNMHELVTSKLLSD-VEGTCTGQYYIISVMDTFNVSEGRII 59
Query: 61 PGEGASTHTVKFRLVVFRPFVGEIIAAKLKESDANGLRLSLGFFEDIYVPSHLLPSPSRS 120
PG G + TV++R VV+RPF E + A + + G G E +V L+ +
Sbjct: 60 PGSGLAEFTVRYRAVVWRPFKNETVDAIVTAVNPAGFHCMAGPLE-FFVSRELISKDIKF 118
Query: 121 EPDPYGRYEVKWIWEFGDTKYVIDGLDEIKFRVLSVNYPSIPIEQAEGSKPFAPMVINGS 180
+P+ W W D D++ + V I + GS M GS
Sbjct: 119 DPNA-----TPWQW--------TDNEDQVIEKGAQVRVKLIGLRSDVGS-----MYAIGS 160
Query: 181 IDYDGLG 187
I D LG
Sbjct: 161 IKEDYLG 167
>gi|440790049|gb|ELR11338.1| DNAdirected RNA polymerase II subunit RPB7, putative, partial
[Acanthamoeba castellanii str. Neff]
Length = 153
Score = 47.4 bits (111), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 30/119 (25%), Positives = 51/119 (42%), Gaps = 1/119 (0%)
Query: 7 IEHTLRLPPHLLRLPLNEAIKLELENVFLDKVIANLGLCISIYDIKEIEGGFVYPGEGAS 66
+ L+L P L I +L G I + I + G + G G
Sbjct: 5 LNRNLQLHPRHFGANLRNTIIQKLHTEVEGTCSGRYGFIIMVTSIATVGLGKINDGTGMV 64
Query: 67 THTVKFRLVVFRPFVGEIIAAKLKESDANGLRLSLGFFEDIYVPSHLLPSPSRSEPDPY 125
T V +R +VFRPF GE++ A + + + G +G + ++V HL+P+ +P +
Sbjct: 65 TFPVAYRAIVFRPFKGEVVDAVVTQVNKMGFMAEVGPLQ-VFVSKHLIPTDMTFDPTEH 122
>gi|45198920|ref|NP_985949.1| AFR402Cp [Ashbya gossypii ATCC 10895]
gi|44984949|gb|AAS53773.1| AFR402Cp [Ashbya gossypii ATCC 10895]
gi|374109179|gb|AEY98085.1| FAFR402Cp [Ashbya gossypii FDAG1]
Length = 171
Score = 47.4 bits (111), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 36/135 (26%), Positives = 59/135 (43%), Gaps = 7/135 (5%)
Query: 1 MFYLSKIEHTLRLPPHLLRLPLNEAIKLELENVFLDKVIANLG--LCISIYDIKEIEGGF 58
MF+ + + L P + E +K +L G LC+ + EIE G
Sbjct: 1 MFFFKDLSLNITLHPSYFGPRMREYLKTKLLQEVEGTCTGKFGYILCVLDSENIEIERGR 60
Query: 59 VYPGEGASTHTVKFRLVVFRPFVGEIIAAKLKESDANGLRLSLGFFEDIYVPSHLLPSP- 117
+ P +G++ TVK+R VV++PF GE++ + G + +G ++V L+P
Sbjct: 61 ILPTDGSAEFTVKYRAVVWKPFKGEVVDGIVSSCTNLGFEVDVGPL-SVFVSPFLMPEDL 119
Query: 118 ---SRSEPDPYGRYE 129
S S P Y E
Sbjct: 120 TFNSGSNPPSYQSSE 134
>gi|18314155|ref|NP_560822.1| DNA-directed RNA polymerase subunit E' [Pyrobaculum aerophilum str.
IM2]
gi|18161744|gb|AAL65004.1| DNA-directed RNA polymerase subunit E' (rpoE1) [Pyrobaculum
aerophilum str. IM2]
Length = 191
Score = 47.4 bits (111), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 26/117 (22%), Positives = 57/117 (48%)
Query: 2 FYLSKIEHTLRLPPHLLRLPLNEAIKLELENVFLDKVIANLGLCISIYDIKEIEGGFVYP 61
F L + E +R+PP PL + +L++ + KV+ +G +++ ++K G +
Sbjct: 3 FRLVEAEDYVRVPPTEFGKPLEDIALSQLKSRYEGKVLREVGYIVAVLNVKVGREGKIVF 62
Query: 62 GEGASTHTVKFRLVVFRPFVGEIIAAKLKESDANGLRLSLGFFEDIYVPSHLLPSPS 118
G+G + H F ++ F P GE++ ++ + G+ + +G H++ P+
Sbjct: 63 GDGGTYHRAVFTMLAFMPLDGEVVEGVVENAREMGMLVRIGPILGFINKIHIMDDPN 119
>gi|326472096|gb|EGD96105.1| RNA polymerase II subunit 7 [Trichophyton tonsurans CBS 112818]
gi|326477039|gb|EGE01049.1| RNA polymerase II subunit 7 [Trichophyton equinum CBS 127.97]
Length = 160
Score = 47.4 bits (111), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 35/129 (27%), Positives = 59/129 (45%), Gaps = 23/129 (17%)
Query: 1 MFYLSKIEHTLRLPPHLLRLPLNEAIKLELENVFLDKVIANLGLC------ISIYDIKEI 54
MF++ +EH L L P +K L LD V G+C + + D+ +I
Sbjct: 1 MFFIHFLEHVLTLHPSFF----GSHVKEYLSQKLLDDV---EGICTGDYYIVCVMDMYDI 53
Query: 55 EGGFVYPGEGASTHTVKFRLVVFRPFVGEIIAAKLKESDANGLRLSLGFFEDIYVPSHLL 114
G + PG G + +T+ +R +V++PF GE G+ +G ++V HL+
Sbjct: 54 SEGKIIPGSGLAEYTIVYRAIVWKPFKGET---------NQGIFAEVGPLT-VFVSKHLI 103
Query: 115 PSPSRSEPD 123
P + +PD
Sbjct: 104 PPEIKWDPD 112
>gi|410670177|ref|YP_006922548.1| DNA-directed RNA polymerase subunit E' [Methanolobus psychrophilus
R15]
gi|409169305|gb|AFV23180.1| DNA-directed RNA polymerase subunit E' [Methanolobus psychrophilus
R15]
Length = 188
Score = 47.0 bits (110), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 28/113 (24%), Positives = 56/113 (49%)
Query: 1 MFYLSKIEHTLRLPPHLLRLPLNEAIKLELENVFLDKVIANLGLCISIYDIKEIEGGFVY 60
M+ ++ T+R+ P+LL + +K L + ++ LG ++I +I I G +
Sbjct: 1 MYKKMRLADTIRVAPNLLGGDVRANVKNALRDKLEGRIDKALGAIVAITEIDAIGEGHIL 60
Query: 61 PGEGASTHTVKFRLVVFRPFVGEIIAAKLKESDANGLRLSLGFFEDIYVPSHL 113
G+GA + F +VF P + E+I ++ E+ G +S+G + + S +
Sbjct: 61 VGDGAVYYDATFDAIVFVPVIQEVIEGEVVETVDFGAFISIGAMDGLLHVSQI 113
>gi|389641835|ref|XP_003718550.1| hypothetical protein MGG_17442 [Magnaporthe oryzae 70-15]
gi|351641103|gb|EHA48966.1| hypothetical protein MGG_17442 [Magnaporthe oryzae 70-15]
gi|440469750|gb|ELQ38847.1| DNA-directed RNA polymerase II subunit RPB7 [Magnaporthe oryzae
Y34]
gi|440482256|gb|ELQ62763.1| DNA-directed RNA polymerase II subunit RPB7 [Magnaporthe oryzae
P131]
Length = 172
Score = 47.0 bits (110), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 29/122 (23%), Positives = 58/122 (47%), Gaps = 16/122 (13%)
Query: 1 MFYLSKIEHTLRLPPHLLRLPLNEAIKLELENVFLDKVIANL-GLC------ISIYDIKE 53
MF+L +E + L P ++E + + +++A+ G C IS+ D +
Sbjct: 1 MFFLHNLERVVSLHPSFFGKNMHE--------IVVQRLLADTEGTCQGDFYIISVMDAVD 52
Query: 54 IEGGFVYPGEGASTHTVKFRLVVFRPFVGEIIAAKLKESDANGLRLSLGFFEDIYVPSHL 113
I G + PG + TV +R VV+RPF G+ + + + +G +++G +++ +
Sbjct: 53 ISPGKIVPGNAMAEFTVNYRAVVWRPFKGQTVDGIVDSVNQHGFFIAVGPLR-VFITKQM 111
Query: 114 LP 115
P
Sbjct: 112 CP 113
>gi|424812204|ref|ZP_18237444.1| DNA-directed RNA polymerase, rpoE [Candidatus Nanosalinarum sp.
J07AB56]
gi|339756426|gb|EGQ40009.1| DNA-directed RNA polymerase, rpoE [Candidatus Nanosalinarum sp.
J07AB56]
Length = 185
Score = 47.0 bits (110), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 23/108 (21%), Positives = 59/108 (54%)
Query: 7 IEHTLRLPPHLLRLPLNEAIKLELENVFLDKVIANLGLCISIYDIKEIEGGFVYPGEGAS 66
+E T+R+PP L L +++ L + ++ ++G+ +++ ++ +EGG + P +
Sbjct: 3 VEDTVRIPPEHLGDDLQSSVEDGLRSTLAGRIEPDVGVFVAVEEVNTVEGGEIRPEDAGV 62
Query: 67 THTVKFRLVVFRPFVGEIIAAKLKESDANGLRLSLGFFEDIYVPSHLL 114
+ V+F+ +VF P + E++ + + + G + +G F+ + S ++
Sbjct: 63 HYDVEFQALVFEPELHEVVRGESVDLTSFGAFIRIGPFDGLCHVSQVM 110
>gi|298674525|ref|YP_003726275.1| DNA-directed RNA polymerase [Methanohalobium evestigatum Z-7303]
gi|298287513|gb|ADI73479.1| DNA-directed RNA polymerase [Methanohalobium evestigatum Z-7303]
Length = 188
Score = 46.6 bits (109), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 31/113 (27%), Positives = 55/113 (48%)
Query: 1 MFYLSKIEHTLRLPPHLLRLPLNEAIKLELENVFLDKVIANLGLCISIYDIKEIEGGFVY 60
M+ K+ T+R+ P L ++K L+N ++ G ++I DI+ I G +
Sbjct: 1 MYKKMKLVDTVRISPDRLGDDETLSVKDALKNKLEGRIDKKNGSIVAITDIESIGEGHII 60
Query: 61 PGEGASTHTVKFRLVVFRPFVGEIIAAKLKESDANGLRLSLGFFEDIYVPSHL 113
G+GA + V F+ +VF P + E+I K+ E G +S G + + S +
Sbjct: 61 MGDGAVYYDVTFKAIVFMPMMQEVIEGKVVEIVDFGAFISFGAMDGLLHVSQI 113
>gi|261403582|ref|YP_003247806.1| DNA-directed RNA polymerase subunit E' [Methanocaldococcus
vulcanius M7]
gi|261370575|gb|ACX73324.1| DNA-directed RNA polymerase [Methanocaldococcus vulcanius M7]
Length = 189
Score = 46.6 bits (109), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 45/171 (26%), Positives = 85/171 (49%), Gaps = 12/171 (7%)
Query: 1 MFYLSKIEHTLRLPPHLLRLPLNEAIKLELENVFLDKVIANLGLCISIYDIKEIEGGFVY 60
M+ + KI +++PP L E IK L + ++ ++G +SI DIK+I G V
Sbjct: 1 MYKILKIADVVKVPPEEFGKDLKETIKKILMEKYEGRLDKDIGFVLSIVDIKDIGDGKVV 60
Query: 61 PGEGASTHTVKFRLVVFRPFVGEIIAAKLKESDANGLRLSLGFFEDIYVPSHLLPSPSRS 120
G+G++ H V F +V+ P + E++ ++ + G + LG + + S ++
Sbjct: 61 HGDGSAYHPVIFETLVYLPEMYELVEGEVVDVVEFGSFVRLGPLDGLVHVSQIM------ 114
Query: 121 EPDPYGRYEVKWIWEFG-DTKYVIDGLDEIKFRVLSVNYPSIPIEQAEGSK 170
D Y Y+ K G +T V++ D ++ R++++ S+ E+ GSK
Sbjct: 115 --DDYVSYDPKREAIIGKETGKVLEIGDYVRARIVAI---SLKAERKRGSK 160
>gi|302925647|ref|XP_003054136.1| predicted protein [Nectria haematococca mpVI 77-13-4]
gi|256735077|gb|EEU48423.1| predicted protein [Nectria haematococca mpVI 77-13-4]
Length = 147
Score = 46.6 bits (109), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 40/147 (27%), Positives = 60/147 (40%), Gaps = 19/147 (12%)
Query: 1 MFYLSKIEHTLRLPPHLLRLPLNEAIKLELENVFLDKVIANLGLCISIYDIKEIEGGFVY 60
MF+L +E + L P +++ + +L ++ A ISI D +I G +
Sbjct: 1 MFFLYNLERRVTLHPSFFGRNMHDLVTHKLLTD-VEGTCAGSYFIISIMDTFDISEGRIL 59
Query: 61 PGEGASTHTVKFRLVVFRPFVGEIIAAKLKESDANGLRLSLGFFEDIYVPSHLLPSPSRS 120
PG G + TV +R VV+RPF GE + + D N ED +
Sbjct: 60 PGNGLAEFTVGYRAVVWRPFKGETLIPSDIKWDPNATPPQFTNNEDTVI----------- 108
Query: 121 EPDPY-------GRYEVKWIWEFGDTK 140
EPD + R EV +W G K
Sbjct: 109 EPDTHVRVKIIGTRTEVGEMWAIGSIK 135
>gi|40539100|gb|AAR87356.1| hypothetical protein LOC_Os03g41300 [Oryza sativa Japonica Group]
gi|40786617|gb|AAR89892.1| putative RNA polymerase [Oryza sativa Japonica Group]
gi|108709771|gb|ABF97566.1| hypothetical protein LOC_Os03g41300 [Oryza sativa Japonica Group]
Length = 205
Score = 46.6 bits (109), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 22/50 (44%), Positives = 30/50 (60%)
Query: 73 RLVVFRPFVGEIIAAKLKESDANGLRLSLGFFEDIYVPSHLLPSPSRSEP 122
R V +PFVGE++ K+ D GL +SL FF DI +P HL+ + S P
Sbjct: 21 RSGVSKPFVGEVLVGKISGYDEKGLHVSLDFFNDICIPGHLMQYGTASYP 70
>gi|297688430|ref|XP_002821689.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed RNA polymerase II
subunit RPB7 [Pongo abelii]
Length = 229
Score = 46.6 bits (109), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 37/151 (24%), Positives = 64/151 (42%), Gaps = 7/151 (4%)
Query: 7 IEHTLRLPPHLLRLPLNEAIKLELENVFLDKVIANLGLCISIYDIKEIEGGFVYPGEGAS 66
+EH + L P L +K +L G I++ I I G G G
Sbjct: 63 LEHEILLHPRYFGPNLLNTVKQKLFTEVEGTCTGKYGFVIAVTTIDNIGAGGSSQGRGLL 122
Query: 67 T-HTVKFRLVVFRPFVGEIIAAKLKESDANGLRLSLGFFEDIYVPSHLLPSPSRSEPDPY 125
+ VK++ +VFRPF GE++ A + + + GL +G ++ H +PS +P+
Sbjct: 123 VLYPVKYKAIVFRPFKGEVVDAVVTQVNKVGLFTEIGPMS-CFISRHSIPSEMEFDPNSN 181
Query: 126 GRYEVKWIWEFGDTKYVIDGLDEIKFRVLSV 156
++ D VI DEI+ +++
Sbjct: 182 -----PPCYKTMDEDIVIQQDDEIRLKIVGT 207
>gi|340345293|ref|ZP_08668425.1| DNA-directed RNA polymerase [Candidatus Nitrosoarchaeum koreensis
MY1]
gi|339520434|gb|EGP94157.1| DNA-directed RNA polymerase [Candidatus Nitrosoarchaeum koreensis
MY1]
Length = 232
Score = 46.6 bits (109), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 46/89 (51%)
Query: 1 MFYLSKIEHTLRLPPHLLRLPLNEAIKLELENVFLDKVIANLGLCISIYDIKEIEGGFVY 60
+F +S + +R+PP L L +A L++ + + A LG I I D K E G +
Sbjct: 36 LFSISTLVDVVRIPPSLFGTALKKAATNILKDKYESMINAELGYIIMILDAKVDEMGKMI 95
Query: 61 PGEGASTHTVKFRLVVFRPFVGEIIAAKL 89
G+G + H V+F + F P + EI+ ++
Sbjct: 96 AGDGGTFHRVEFEALTFYPKLQEIVQGEI 124
>gi|336476432|ref|YP_004615573.1| DNA-directed RNA polymerase [Methanosalsum zhilinae DSM 4017]
gi|335929813|gb|AEH60354.1| DNA-directed RNA polymerase [Methanosalsum zhilinae DSM 4017]
Length = 188
Score = 46.6 bits (109), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 27/102 (26%), Positives = 54/102 (52%)
Query: 1 MFYLSKIEHTLRLPPHLLRLPLNEAIKLELENVFLDKVIANLGLCISIYDIKEIEGGFVY 60
M+ K+ T+R+ P LL + + +K EL+ +V +G +++ ++++I G +
Sbjct: 1 MYKRMKLIDTVRIAPDLLGEDVKKCVKNELKKNLEGRVDKKIGAIVAVTNVEKIGEGHIL 60
Query: 61 PGEGASTHTVKFRLVVFRPFVGEIIAAKLKESDANGLRLSLG 102
G+GA + V F + F P + E+I ++ E G +S+G
Sbjct: 61 VGDGAIYYDVTFEAITFLPQIQEVIEGQVVEIVEFGAFVSIG 102
>gi|330508866|ref|YP_004385294.1| DNA-directed RNA polymerase [Methanosaeta concilii GP6]
gi|328929674|gb|AEB69476.1| DNA-directed RNA polymerase [Methanosaeta concilii GP6]
Length = 194
Score = 46.6 bits (109), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 32/113 (28%), Positives = 57/113 (50%)
Query: 1 MFYLSKIEHTLRLPPHLLRLPLNEAIKLELENVFLDKVIANLGLCISIYDIKEIEGGFVY 60
M+ K++ R+ P L PL A++ L + + V +LG +++ +I G +
Sbjct: 1 MYKKMKLKGVARIEPDHLGDPLEAAVERALRDKYEGVVDKSLGTIVAVLGADDIGEGHIL 60
Query: 61 PGEGASTHTVKFRLVVFRPFVGEIIAAKLKESDANGLRLSLGFFEDIYVPSHL 113
G+G+ + V F +VF+P + EII ++ E G LSLG F+ + S +
Sbjct: 61 AGDGSIYYEVNFDTLVFKPEMQEIIEGEVVEIVKFGAFLSLGPFDGLLHVSQI 113
>gi|196007472|ref|XP_002113602.1| hypothetical protein TRIADDRAFT_50378 [Trichoplax adhaerens]
gi|190584006|gb|EDV24076.1| hypothetical protein TRIADDRAFT_50378 [Trichoplax adhaerens]
Length = 172
Score = 46.6 bits (109), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 39/194 (20%), Positives = 82/194 (42%), Gaps = 26/194 (13%)
Query: 1 MFYLSKIEHTLRLPPHLLRLPLNEAIKLELENVFLDKVIANLGLCISIYDIKEIEGGFVY 60
MF+ +EH + L P L + ++ +L + G I++ I ++ G +
Sbjct: 1 MFFHVTLEHEITLHPRYFGPNLLDTVRRKLFSEVEGTCSGKHGFVIAVTIIDKVGVGKIL 60
Query: 61 PGEGASTHTVKFRLVVFRPFVGEIIAAKLKESDANGLRLSLG----FFEDIYVPSHLLPS 116
P G + V+++ +VF+PF GE++ + + + GL + +G F +P +
Sbjct: 61 PNSGFVVYPVRYKAIVFKPFPGEVVDGIVTQLNKVGLFVEVGPLTCFISKYSIPRDMFFD 120
Query: 117 PSRSEPDPYGRYEVKWIWEFGDTKYVIDGLDEIKFRVLSVNYPSIPIEQAEGSKPFAPMV 176
P+ + P + D ++ DE++ +++ + + FA
Sbjct: 121 PNGNPP----------CFRTEDEDMIVQTGDEVRLKIVGT--------RVDVKDIFAV-- 160
Query: 177 INGSIDYDGLGPVS 190
GS+D D LG ++
Sbjct: 161 --GSLDQDYLGKIN 172
>gi|302506941|ref|XP_003015427.1| DNA-directed RNA polymerase complex II subunit Rpb7 [Arthroderma
benhamiae CBS 112371]
gi|291178999|gb|EFE34787.1| DNA-directed RNA polymerase complex II subunit Rpb7 [Arthroderma
benhamiae CBS 112371]
Length = 297
Score = 46.6 bits (109), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 35/129 (27%), Positives = 59/129 (45%), Gaps = 23/129 (17%)
Query: 1 MFYLSKIEHTLRLPPHLLRLPLNEAIKLELENVFLDKVIANLGLC------ISIYDIKEI 54
MF++ +EH L L P +K L LD V G+C + + D+ +I
Sbjct: 1 MFFIHFLEHVLTLHPSFF----GSHVKEYLSQKLLDDV---EGICTGDYYIVCVMDMYDI 53
Query: 55 EGGFVYPGEGASTHTVKFRLVVFRPFVGEIIAAKLKESDANGLRLSLGFFEDIYVPSHLL 114
G + PG G + +T+ +R +V++PF GE G+ +G ++V HL+
Sbjct: 54 SEGKIIPGSGLAEYTIVYRAIVWKPFKGET---------NQGIFAEVGPLT-VFVSKHLI 103
Query: 115 PSPSRSEPD 123
P + +PD
Sbjct: 104 PPEIKWDPD 112
>gi|406604823|emb|CCH43698.1| DNA-directed RNA polymerase II subunit [Wickerhamomyces ciferrii]
Length = 150
Score = 46.6 bits (109), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 29/108 (26%), Positives = 51/108 (47%), Gaps = 13/108 (12%)
Query: 22 LNEAIKLELENVFLDKVIANLGLCISIYDIKEIE--GGFVYPGEGASTHTVKFRLVVFRP 79
+N+ ++ +L N G + + D I+ G + P +G++ VK+R VV++P
Sbjct: 1 MNQFLRTKLLNEVEGSCTGKFGYIMCVLDCMSIDIGKGKIIPSDGSAEFEVKYRAVVWKP 60
Query: 80 FVGEIIAAKLKESDANGLRLSLGFFED-----IYVPSHLLPSPSRSEP 122
F GE++ + LGFF D ++V +HL+PS P
Sbjct: 61 FKGEVVDGVCSQVS------KLGFFVDVGPLSVFVSTHLIPSDMSFNP 102
>gi|13541317|ref|NP_111005.1| DNA-directed RNA polymerase subunit E' [Thermoplasma volcanium
GSS1]
Length = 192
Score = 46.2 bits (108), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 47/201 (23%), Positives = 90/201 (44%), Gaps = 26/201 (12%)
Query: 1 MFYLSKIEHTLRLPPHLLRLPLNEAI----KLELENVFLDKVIANLG------LCISIYD 50
M+ + + ++ R+PP +L ++A+ K LE +D V G L ISI
Sbjct: 1 MYMMVEDKYIARIPPDMLGEDYDKAVEEVTKRSLEGKLVDVVNEKTGVNEGKYLVISIIS 60
Query: 51 IKEIEGGFVYPGEGASTHTVKFRLVVFRPFVGEIIAAKLKESDANGLRLSLGFFEDIYVP 110
K + G + G+G VK+ +VF P + EI+ ++ G + FE +
Sbjct: 61 TKAVGEGSIVHGDGGVYQEVKYSALVFYPEMQEIVDGEVVSVQKFGAFVKFSSFEGLLHI 120
Query: 111 SHLLPSPSRSEPDPYGRYEVKWIWEFGDTKYVIDGLDEIKFRVLSVNYPSIPIEQAEGSK 170
S ++ R + D + ++I + DTK + D+++ R++++N S +E ++
Sbjct: 121 SQIM--DDRIDVDLENK---RFIGK--DTKRDLKVGDKVRVRIVALNLASSSVEDSK--- 170
Query: 171 PFAPMVINGSIDYDGLGPVSW 191
I ++ GLG + W
Sbjct: 171 ------IGFTMKQVGLGKLEW 185
>gi|14324700|dbj|BAB59627.1| DNA-directed RNA polymerase E' [Thermoplasma volcanium GSS1]
Length = 195
Score = 46.2 bits (108), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 47/201 (23%), Positives = 90/201 (44%), Gaps = 26/201 (12%)
Query: 1 MFYLSKIEHTLRLPPHLLRLPLNEAI----KLELENVFLDKVIANLG------LCISIYD 50
M+ + + ++ R+PP +L ++A+ K LE +D V G L ISI
Sbjct: 4 MYMMVEDKYIARIPPDMLGEDYDKAVEEVTKRSLEGKLVDVVNEKTGVNEGKYLVISIIS 63
Query: 51 IKEIEGGFVYPGEGASTHTVKFRLVVFRPFVGEIIAAKLKESDANGLRLSLGFFEDIYVP 110
K + G + G+G VK+ +VF P + EI+ ++ G + FE +
Sbjct: 64 TKAVGEGSIVHGDGGVYQEVKYSALVFYPEMQEIVDGEVVSVQKFGAFVKFSSFEGLLHI 123
Query: 111 SHLLPSPSRSEPDPYGRYEVKWIWEFGDTKYVIDGLDEIKFRVLSVNYPSIPIEQAEGSK 170
S ++ R + D + ++I + DTK + D+++ R++++N S +E ++
Sbjct: 124 SQIM--DDRIDVDLENK---RFIGK--DTKRDLKVGDKVRVRIVALNLASSSVEDSK--- 173
Query: 171 PFAPMVINGSIDYDGLGPVSW 191
I ++ GLG + W
Sbjct: 174 ------IGFTMKQVGLGKLEW 188
>gi|403418884|emb|CCM05584.1| predicted protein [Fibroporia radiculosa]
Length = 170
Score = 46.2 bits (108), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 29/128 (22%), Positives = 58/128 (45%), Gaps = 11/128 (8%)
Query: 1 MFYLSKIEHTLRLPPHLLRLPLNEAIKLELENVFLDKVIANLGLCISIYDIKEIEGGFVY 60
MF++ ++ HT+ L P + + ++ +L + G I++ I +I G V
Sbjct: 1 MFFIKELSHTILLHPSYFGPRMLQFLESKLYSDVEGTCSGQFGYIIAVVSILDIGKGMVL 60
Query: 61 PGEGASTHTVKFRLVVFRPFVGEIIAAKLKESDANGLRLSLGFFED-----IYVPSHLLP 115
G G + ++R +VF+PF GE++ + +GFF D ++V L+
Sbjct: 61 SGSGQAEFITRYRAIVFKPFKGEVVDGVVNNVT------KMGFFADVGPLTVFVSHQLIH 114
Query: 116 SPSRSEPD 123
+ +P+
Sbjct: 115 PDMKFDPN 122
>gi|70953162|ref|XP_745700.1| hypothetical protein [Plasmodium chabaudi chabaudi]
gi|56526105|emb|CAH77144.1| conserved hypothetical protein [Plasmodium chabaudi chabaudi]
Length = 87
Score = 46.2 bits (108), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 33/93 (35%), Positives = 43/93 (46%), Gaps = 7/93 (7%)
Query: 100 SLGFFEDIYVPSHLLPSPSRSEPDPYGRYEVKWIWEFGDTKYVIDGLDEIKFRVLSVNYP 159
SLGFFE+I V L EP + + +W W + K + I+ R+L Y
Sbjct: 1 SLGFFENIRVNRAYL-----KEPKAFDDEKNEWYWTYEGIKCFYTKNEPIRIRILET-YF 54
Query: 160 SIPIEQAEGSKPFAPMVINGSIDYDGLGPVSWW 192
S P E E + M I GS+ DGLG V WW
Sbjct: 55 SDPNELNE-DESIPSMSITGSVQQDGLGLVKWW 86
>gi|355571472|ref|ZP_09042724.1| DNA-directed RNA polymerase [Methanolinea tarda NOBI-1]
gi|354825860|gb|EHF10082.1| DNA-directed RNA polymerase [Methanolinea tarda NOBI-1]
Length = 196
Score = 46.2 bits (108), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 29/102 (28%), Positives = 52/102 (50%)
Query: 1 MFYLSKIEHTLRLPPHLLRLPLNEAIKLELENVFLDKVIANLGLCISIYDIKEIEGGFVY 60
M+Y ++ +R+PPH + L+ I L+ + +G+ I++ + I G +
Sbjct: 1 MYYKMEMSDKVRVPPHRMGEELSRVILDVLQEHLEGSIDKEIGIFIAVTRVITIGEGEIV 60
Query: 61 PGEGASTHTVKFRLVVFRPFVGEIIAAKLKESDANGLRLSLG 102
PG+GA + V F VV R + E+I + E+ + G +SLG
Sbjct: 61 PGDGAIYYDVDFEAVVLRLSLQEVIEGLVVETTSFGAFVSLG 102
>gi|428178976|gb|EKX47849.1| DNA-directed RNA polymerase II subunit RPB7 [Guillardia theta
CCMP2712]
Length = 183
Score = 46.2 bits (108), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 45/198 (22%), Positives = 82/198 (41%), Gaps = 28/198 (14%)
Query: 2 FYLSKIEHTLRLPPHLLRLPLNEAIKLELENVFLDKVIANLGLCISIY--DIKEIEGGFV 59
F++ ++ L++ P L IK L++ + G+ + ++ D+ +EG +
Sbjct: 3 FHVKRLSKNLQIEPKYYGPSLAVVIKQRLQDEVENSCSERYGIVLKVFNIDVDNLEGKIM 62
Query: 60 ----YPGEGASTHTVKFRLVVFRPFVGEIIAAKLKESDANGLRLSLGFFEDIYVPSHLLP 115
+PG G + TV + +VF+PF GE++ +K S A GL + G + ++L
Sbjct: 63 PTGMHPG-GTAVFTVPYDAIVFKPFKGEVLNGVVKSSAAQGLFVQCGPLQVFIAKANLAD 121
Query: 116 SPS----RSEPDPYGRYEVKWIWEFGDTKYVIDGLDEIKFRVLSVNYPSIPIEQAEGSKP 171
+ R + P W D + VI ++ R+L + I Q
Sbjct: 122 DNNGLEWRGDNTPP-------CWMSRDERIVIGDKTHLRLRILGTRIQN-DISQCSAV-- 171
Query: 172 FAPMVINGSIDYDGLGPV 189
G+I D LGP+
Sbjct: 172 -------GTILDDYLGPI 182
>gi|399216595|emb|CCF73282.1| unnamed protein product [Babesia microti strain RI]
Length = 178
Score = 46.2 bits (108), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 49/191 (25%), Positives = 77/191 (40%), Gaps = 20/191 (10%)
Query: 1 MFYLSKIEHTLRLPPHLLRLPLNEAIKLELENVFLDKVIANLGLCISIYDIKEIEGGFVY 60
M+++ + + + P L + I+ L N A G + + I E G V
Sbjct: 1 MYFVIEQWKNIGIKPSQLGPNYQQCIEEMLRNEVEGHCTAKFGYVVCVIRIVHCESGRVQ 60
Query: 61 PGEGASTHTVKFRLVVFRPFVGEIIAAKLKESDANGLRLSLGFFEDIYVPSHLLPSPSRS 120
G G +VK++ +VF+PF E++ A + +D N LGFF P + S S
Sbjct: 61 DGTGMIIVSVKYQAIVFKPFKDEVLDAIV--TDVN----KLGFFAQAG-PLKVFVSKSSI 113
Query: 121 EPDPYGRYEVKWIWEFGDTKYVIDGLDEIKFRVLSVNYPSIPIEQAEGSKPFAPMVIN-- 178
P Y + F D VI EI+ R+ + Y + S FA I
Sbjct: 114 APG-YAYQDDASQPCFSDGTSVIRSQTEIRMRLQGIRY--------DNSNMFAIATIKAD 164
Query: 179 --GSIDYDGLG 187
G ++ DG+G
Sbjct: 165 YLGPVENDGVG 175
>gi|449548439|gb|EMD39406.1| hypothetical protein CERSUDRAFT_113038 [Ceriporiopsis subvermispora
B]
Length = 170
Score = 46.2 bits (108), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 27/107 (25%), Positives = 51/107 (47%), Gaps = 6/107 (5%)
Query: 1 MFYLSKIEHTLRLPPHLLRLPLNEAIKLELENVFLDKVIANLGLCISIYDIKEIEGGFVY 60
MF++ ++ HT+ L P + + ++ +L + G I++ I +I G V
Sbjct: 1 MFFIKELSHTILLHPSYFGPRMLQFLESKLYSDVEGTCSGQFGYIIAVVSILDIGKGMVL 60
Query: 61 PGEGASTHTVKFRLVVFRPFVGEIIAAKLKESDANGLRLSLGFFEDI 107
PG G + ++R +VF+PF GE++ + +GFF D+
Sbjct: 61 PGSGQAEFVTRYRAIVFKPFKGEVVDGVVNNV------NKMGFFADV 101
>gi|342876142|gb|EGU77800.1| hypothetical protein FOXB_11664 [Fusarium oxysporum Fo5176]
Length = 171
Score = 45.8 bits (107), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 40/147 (27%), Positives = 60/147 (40%), Gaps = 19/147 (12%)
Query: 1 MFYLSKIEHTLRLPPHLLRLPLNEAIKLELENVFLDKVIANLGLCISIYDIKEIEGGFVY 60
MF+L +E + L P + +++ + +L ++ A ISI D EI G +
Sbjct: 1 MFFLYNLERKVTLHPSFMGRNMHDLVTAKLLKD-VEGTCAGSYFIISIMDAFEISEGRIL 59
Query: 61 PGEGASTHTVKFRLVVFRPFVGEIIAAKLKESDANGLRLSLGFFEDIYVPSHLLPSPSRS 120
PG G + TV +R VV+RPF GE + + D N ED +
Sbjct: 60 PGLGMAEFTVGYRAVVWRPFKGETLIPSDVKYDPNATPPQFTNNEDTSI----------- 108
Query: 121 EPDPY-------GRYEVKWIWEFGDTK 140
EP + R EV +W G K
Sbjct: 109 EPQTHVRVKIIGTRTEVGEMWAIGSIK 135
>gi|402223848|gb|EJU03912.1| hypothetical protein DACRYDRAFT_49099, partial [Dacryopinax sp.
DJM-731 SS1]
Length = 166
Score = 45.8 bits (107), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 27/113 (23%), Positives = 54/113 (47%), Gaps = 1/113 (0%)
Query: 7 IEHTLRLPPHLLRLPLNEAIKLELENVFLDKVIANLGLCISIYDIKEIEGGFVYPGEGAS 66
+ HT+ L P +++ I+ +L G I++ D+ ++ G V G G +
Sbjct: 3 LHHTILLHPSYFGARMHQHIESKLHADVEGTCSGEYGYIIAVLDVIDVGVGLVSVGAGHA 62
Query: 67 THTVKFRLVVFRPFVGEIIAAKLKESDANGLRLSLGFFEDIYVPSHLLPSPSR 119
T +R +VF+PF GE++ + + + G +G + ++V +HL+ R
Sbjct: 63 EFTTTYRAIVFKPFKGEVLDSVVTSVNKMGFFAEVGPLQ-VFVSAHLIHPDMR 114
>gi|395323800|gb|EJF56256.1| hypothetical protein DICSQDRAFT_175060 [Dichomitus squalens
LYAD-421 SS1]
Length = 170
Score = 45.8 bits (107), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 26/107 (24%), Positives = 51/107 (47%), Gaps = 6/107 (5%)
Query: 1 MFYLSKIEHTLRLPPHLLRLPLNEAIKLELENVFLDKVIANLGLCISIYDIKEIEGGFVY 60
MF++ ++ HT+ L P + + ++ +L + G I++ I +I G V
Sbjct: 1 MFFIKELSHTIHLHPSYFGPRMLQFLESKLYSDVEGTCSGEFGYIIAVVSILDIGKGMVM 60
Query: 61 PGEGASTHTVKFRLVVFRPFVGEIIAAKLKESDANGLRLSLGFFEDI 107
PG G + ++R +VF+PF G+++ + +GFF D+
Sbjct: 61 PGSGQAEFVTRYRAIVFKPFKGQVVDGVVNNV------NKMGFFADV 101
>gi|282163022|ref|YP_003355407.1| DNA-directed RNA polymerase subunit E' [Methanocella paludicola
SANAE]
gi|282155336|dbj|BAI60424.1| DNA-directed RNA polymerase subunit E' [Methanocella paludicola
SANAE]
Length = 195
Score = 45.8 bits (107), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 27/102 (26%), Positives = 52/102 (50%)
Query: 1 MFYLSKIEHTLRLPPHLLRLPLNEAIKLELENVFLDKVIANLGLCISIYDIKEIEGGFVY 60
M+ ++ +R+PP L L + I + + ++ LG +++ DI +I G +
Sbjct: 1 MYRKVRLVDIIRIPPQRLEEDLEQVITETIRDKLEGRIDKALGSIVAVLDIVDIGEGHIL 60
Query: 61 PGEGASTHTVKFRLVVFRPFVGEIIAAKLKESDANGLRLSLG 102
G+GA + V F + +RP + EI+ ++ E A G +S+G
Sbjct: 61 VGDGAVYYEVTFDAISYRPELQEIVEGQVVEIVAFGAFVSVG 102
>gi|111140005|gb|ABH06364.1| RNA polymerase II [Sorbus aucuparia]
Length = 110
Score = 45.8 bits (107), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 32/114 (28%), Positives = 53/114 (46%), Gaps = 11/114 (9%)
Query: 7 IEHTLRLPPHLLRLPLNEAIKLELENVFLDKVIANLGLCISIYDIKEIEGGFVYPGEGAS 66
+E ++L P L E + +L G ++I I+ I G + G G
Sbjct: 3 LERNMQLHPRHFGRNLRENLVSKLMKDVEGTCSGQHGFVVAITGIENIGKGMIRDGTGFV 62
Query: 67 THTVKFRLVVFRPFVGEIIAAKLKESDANGLRLSLGFFED-----IYVPSHLLP 115
+ +K++ VVFRPF GEI+ A + + +GFF + I+V +HL+P
Sbjct: 63 SFPMKYQCVVFRPFKGEILEAVVTMVN------KMGFFAEAGPVQIFVSNHLIP 110
>gi|124485482|ref|YP_001030098.1| DNA-directed RNA polymerase subunit E' [Methanocorpusculum
labreanum Z]
gi|124363023|gb|ABN06831.1| DNA-directed RNA polymerase, subunit E' [Methanocorpusculum
labreanum Z]
Length = 190
Score = 45.8 bits (107), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 29/102 (28%), Positives = 50/102 (49%)
Query: 1 MFYLSKIEHTLRLPPHLLRLPLNEAIKLELENVFLDKVIANLGLCISIYDIKEIEGGFVY 60
M+Y K+ +R+PP + LN I L+ F V +G+ I++ + + G +
Sbjct: 1 MYYKLKLNDKVRVPPERMGEDLNTVILDVLQEQFEGSVDKEMGIFIAVTGVNRVGDGEII 60
Query: 61 PGEGASTHTVKFRLVVFRPFVGEIIAAKLKESDANGLRLSLG 102
+G + + V F VV R + EII + E+ + G +SLG
Sbjct: 61 YSDGGAYYDVDFEAVVLRLSLQEIIEGVVVETTSFGAFVSLG 102
>gi|156936879|ref|YP_001434675.1| DNA-directed RNA polymerase subunit E' [Ignicoccus hospitalis
KIN4/I]
gi|156565863|gb|ABU81268.1| DNA-directed RNA polymerase, subunit E' [Ignicoccus hospitalis
KIN4/I]
Length = 177
Score = 45.8 bits (107), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 26/103 (25%), Positives = 53/103 (51%), Gaps = 2/103 (1%)
Query: 1 MFYLSKIEHTLRLPPHLLRLPLNEAIKLELENVFLDKVI-ANLGLCISIYDIKEIEGGFV 59
M+ + + + +R+PP L + + LEL + VI LG+ +++ D+ G++
Sbjct: 1 MYRIYRFKDMVRIPPERFGEDLKK-VALELLREEYEGVIDEELGIILTVTDVDISPEGYI 59
Query: 60 YPGEGASTHTVKFRLVVFRPFVGEIIAAKLKESDANGLRLSLG 102
PG+G + H F L+ F+P E++ + NG+ +++G
Sbjct: 60 VPGDGGTYHEATFTLLAFKPLRNEVVEGIVVNVTKNGIYVNIG 102
>gi|298710882|emb|CBJ26391.1| conserved unknown protein [Ectocarpus siliculosus]
Length = 177
Score = 45.4 bits (106), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 32/128 (25%), Positives = 58/128 (45%), Gaps = 3/128 (2%)
Query: 1 MFYLSKIEHTLRLPPHLLRLPLNEAIKLELENVFLDKVIANLGLCISIYDIK--EIEGGF 58
MFYL ++ + +PP L + I+ +L + +LG I++ ++ +I+ G
Sbjct: 1 MFYLKELRRPMLVPPSDFGPKLKDTIRRKLIEEVEGTSVGSLGFVITVTNVSDDQIQMGT 60
Query: 59 VYPGEGASTHTVKFRLVVFRPFVGEIIAAKLKESDANGLRLSLGFFEDIYVPSHLLPSPS 118
+ G + V +R + FRPFV E++ A + G +G E ++V +P
Sbjct: 61 IEFDTGFANVLVVYRAICFRPFVNEVLDAAVSHVTELGFFAEVGPLE-VFVSRLGMPDDI 119
Query: 119 RSEPDPYG 126
DP G
Sbjct: 120 AGGYDPVG 127
>gi|256810821|ref|YP_003128190.1| DNA-directed RNA polymerase subunit E' [Methanocaldococcus
fervens AG86]
gi|256794021|gb|ACV24690.1| DNA-directed RNA polymerase [Methanocaldococcus fervens AG86]
Length = 187
Score = 45.4 bits (106), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 43/79 (54%)
Query: 1 MFYLSKIEHTLRLPPHLLRLPLNEAIKLELENVFLDKVIANLGLCISIYDIKEIEGGFVY 60
M+ + +I +R+PP L E IK L + ++ ++G +SI D+KE+ G V
Sbjct: 1 MYKILEIADVVRVPPEEFGKDLKETIKKILIEKYEGRLDKDVGFILSIVDVKEVGDGKVV 60
Query: 61 PGEGASTHTVKFRLVVFRP 79
G+G++ H V F +V+ P
Sbjct: 61 HGDGSAYHPVVFETLVYVP 79
>gi|300706401|ref|XP_002995470.1| hypothetical protein NCER_101623 [Nosema ceranae BRL01]
gi|239604588|gb|EEQ81799.1| hypothetical protein NCER_101623 [Nosema ceranae BRL01]
Length = 155
Score = 45.4 bits (106), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 32/116 (27%), Positives = 59/116 (50%), Gaps = 3/116 (2%)
Query: 1 MFYLSKIEHTLRLPPHLLRLPLNEAIKLELENVFLDKVIANLGLCISIYDIKEIEGGFVY 60
MF++ H + L P L + IK L ++ + G IS+ +I ++ G V
Sbjct: 1 MFFVKDFTHIIHLNPCYLGPKIQSLIKDYLYKT-IEGSCNDSGYVISVLEIDDVSEGTVS 59
Query: 61 PGEGASTHTVKFRLVVFRPFVGEIIAAKLKESDANGLRLSLGFFEDIYVPSHLLPS 116
GA++ +K++ +V +PF GE + A + E + G+ S+G ++V +H +PS
Sbjct: 60 L-NGATSFKIKYKALVLKPFKGETMEASVVEINKMGVFASVGPLT-VFVSNHQIPS 113
>gi|307105977|gb|EFN54224.1| hypothetical protein CHLNCDRAFT_36106 [Chlorella variabilis]
Length = 174
Score = 45.4 bits (106), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 42/194 (21%), Positives = 78/194 (40%), Gaps = 27/194 (13%)
Query: 1 MFYLSKIEHTLRLPPHLLRLPLNEAIKLELENVFLDKVIANLGLCISIYDIKEIEGGFVY 60
MFYL ++ L + P L E I+ L G +S+ + + G +
Sbjct: 1 MFYLIELYKELEVHPRFFGPKLREEIERRLRQEVEGTCNGRYGFILSVMGVLDTGKGLIR 60
Query: 61 PGEGASTHTVKFRLVVFRPFVGEIIAAKLKESDANGLRLSLGFFEDIYVPSHLLPS---- 116
G G++ +K++ + +PF G+++ + + G G + ++V +HL+P
Sbjct: 61 EGSGSAVFNLKYKCICMKPFKGQVMDVVVTSVNKMGFFAEAGPLQ-VFVSNHLIPEGFEF 119
Query: 117 PSRSEPDPYGRYEVKWIWEFGDTKYVIDGLDEIKFRVLSVNYPSIPIEQAEGSKPFAPMV 176
+ EP ++ D + I E++ R++ + + S FA
Sbjct: 120 NTAHEP----------CYQTADGEQKIVPGSEVRLRIVGT--------RVDASDIFAV-- 159
Query: 177 INGSIDYDGLGPVS 190
GSI D LG VS
Sbjct: 160 --GSIKEDYLGVVS 171
>gi|325185644|emb|CCA20126.1| DNAdirected RNA polymerase II 19 kDa polypeptide pu [Albugo
laibachii Nc14]
Length = 179
Score = 45.4 bits (106), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 30/123 (24%), Positives = 57/123 (46%), Gaps = 13/123 (10%)
Query: 1 MFYLSKIEHTLRLPPHLLRLPLNEAIKLELENVFLDKVIANLGLCISIYDIKE--IEGGF 58
MF+L ++ L L P L++ I+L L + G I++ ++++ I G
Sbjct: 1 MFFLKQLSRDLLLHPMHFGPKLHDIIRLRLIEEVEGTSMGKYGYVITVTEVRDEDIGKGV 60
Query: 59 VYPGEGASTHTVKFRLVVFRPFVGEIIAAKLKESDANGLRLSLGFFED-----IYVPSHL 113
+ G +++R ++FRPF E++ A + + LGFF D ++V H
Sbjct: 61 IQDNSGYVCFNIRYRAILFRPFKNEVLDAVVSVVN------QLGFFADVGPLQVFVSRHA 114
Query: 114 LPS 116
+P+
Sbjct: 115 MPT 117
>gi|118576156|ref|YP_875899.1| DNA-directed RNA polymerase, subunit E' [Cenarchaeum symbiosum A]
gi|118194677|gb|ABK77595.1| DNA-directed RNA polymerase, subunit E' [Cenarchaeum symbiosum A]
Length = 244
Score = 45.4 bits (106), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 46/89 (51%)
Query: 1 MFYLSKIEHTLRLPPHLLRLPLNEAIKLELENVFLDKVIANLGLCISIYDIKEIEGGFVY 60
+F +S + +R+PP L L +A L+ + + A+LG I I D K E G +
Sbjct: 29 VFSISTLVDVVRIPPSLFGTTLKKAAINILKEKYESMINADLGYIIMILDAKVEEMGKMI 88
Query: 61 PGEGASTHTVKFRLVVFRPFVGEIIAAKL 89
G+G + H V+F + F P + EII ++
Sbjct: 89 AGDGGTFHKVEFNALTFYPKLQEIIQGEI 117
>gi|67522128|ref|XP_659125.1| hypothetical protein AN1521.2 [Aspergillus nidulans FGSC A4]
gi|40744621|gb|EAA63777.1| hypothetical protein AN1521.2 [Aspergillus nidulans FGSC A4]
gi|259486847|tpe|CBF85037.1| TPA: RNA polymerase II subunit 7 (AFU_orthologue; AFUA_8G05300)
[Aspergillus nidulans FGSC A4]
Length = 169
Score = 45.4 bits (106), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 43/78 (55%), Gaps = 1/78 (1%)
Query: 46 ISIYDIKEIEGGFVYPGEGASTHTVKFRLVVFRPFVGEIIAAKLKESDANGLRLSLGFFE 105
I + D+ +I G V PG G + +T+K+R ++++PF GE + A + G+ +L
Sbjct: 45 ICVMDMVDIGEGRVLPGNGQAEYTIKYRAIIWKPFRGETVDALVTSVKPTGI-FTLAGPL 103
Query: 106 DIYVPSHLLPSPSRSEPD 123
+++ +PS R EP+
Sbjct: 104 SVFIARKNIPSDIRWEPN 121
>gi|453089186|gb|EMF17226.1| DNA-directed RNA polymerase II subunit RPB7 [Mycosphaerella
populorum SO2202]
Length = 171
Score = 45.1 bits (105), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 46/189 (24%), Positives = 75/189 (39%), Gaps = 20/189 (10%)
Query: 1 MFYLSKIEHTLRLPPHLLRLPLNEAIKLELENVFLDKVIANLGLCISIYDIKEIEGGFVY 60
MF+++ L P + ++ L KV + + I +I EI +
Sbjct: 1 MFFVAHRVRECTLHPSFFNSGADAQVRQRLYEDMEGKV-EGTEMIVQIIEIDEISEPVLV 59
Query: 61 PGEGASTHTVKFRLVVFRPFVGEIIAAKLKESDANGLRLSLGFFEDIYVPSHLLPSPSRS 120
PG G + +T+ +R +V+RPF GE++ + NG + +G ++V ++P
Sbjct: 60 PGTGMAKYTLSYRAIVWRPFRGEVVDGMVTSVVNNGFFVDVGAL-SVFVSKAMIPGA--- 115
Query: 121 EPDPYGRYEVKWIWEFGDTKYVIDGLDEIKFRVLSVNYPSIPIEQAEGSKPFAPMVINGS 180
+K+ E G T D D+ R V I GS M GS
Sbjct: 116 ---------LKYTVE-GSTPSFTDNSDQTIERGTQVRLRIKGIRGEMGS-----MYAIGS 160
Query: 181 IDYDGLGPV 189
I D LGP+
Sbjct: 161 IREDYLGPL 169
>gi|359497347|ref|XP_002268057.2| PREDICTED: double-strand break repair protein MRE11-like [Vitis
vinifera]
Length = 141
Score = 45.1 bits (105), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 22/36 (61%), Positives = 26/36 (72%)
Query: 1 MFYLSKIEHTLRLPPHLLRLPLNEAIKLELENVFLD 36
MF+LS IEHT++L HLL LPLNEA+K E E D
Sbjct: 1 MFFLSLIEHTVQLRHHLLDLPLNEAVKGEFETKIDD 36
>gi|169846764|ref|XP_001830096.1| DNA-directed RNA polymerase II subunit [Coprinopsis cinerea
okayama7#130]
gi|116508866|gb|EAU91761.1| DNA-directed RNA polymerase II subunit [Coprinopsis cinerea
okayama7#130]
Length = 170
Score = 45.1 bits (105), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 27/107 (25%), Positives = 49/107 (45%), Gaps = 6/107 (5%)
Query: 1 MFYLSKIEHTLRLPPHLLRLPLNEAIKLELENVFLDKVIANLGLCISIYDIKEIEGGFVY 60
MF++ ++ HT+ L P + ++ +L N G I++ I +I G V
Sbjct: 1 MFFIKELTHTILLHPSYFGPQMLSYLETKLYNDVEGTCSGQFGYIIAVVSILDIGKGMVL 60
Query: 61 PGEGASTHTVKFRLVVFRPFVGEIIAAKLKESDANGLRLSLGFFEDI 107
G G + ++R +VF+PF GE++ + +GFF D+
Sbjct: 61 SGSGQAEFITRYRAIVFKPFKGEVVDGVVNNV------NKMGFFADV 101
>gi|327310158|ref|YP_004337055.1| DNA-directed RNA polymerase subunit E' [Thermoproteus uzoniensis
768-20]
gi|326946637|gb|AEA11743.1| DNA-directed RNA polymerase subunit E' [Thermoproteus uzoniensis
768-20]
Length = 189
Score = 45.1 bits (105), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 45/197 (22%), Positives = 84/197 (42%), Gaps = 26/197 (13%)
Query: 2 FYLSKIEHTLRLPPHLLRLPLNEAIKLELENVFLDKVIANLGLCISIYDIKEIEGGFVYP 61
F L + E +R+ P PL + +L + K +LG +++ K G +
Sbjct: 3 FRLIEAEDYVRINPSEFGKPLEDVALAQLRARYEGKSFRDLGFVVAVLGAKVAREGVILF 62
Query: 62 GEGASTHTVKFRLVVFRPFVGEIIAAKLKESDANGLRLS----LGFFEDIYV---PSHLL 114
G+GA+ H F L+ + P GE++ ++ + G+ + LGF I++ P+ L
Sbjct: 63 GDGATYHRAVFDLLTYVPLDGEVVYGIVESAREVGVMVRIGPVLGFINKIHLMEEPNILF 122
Query: 115 PSPSRSEPDPYGRYEVKWIWEFGDTKYVIDGLDEIKFRVLSVNYPSIPIEQAEGSKPFAP 174
+ ++S +I E K + D ++ R+ V+Y + Q EG
Sbjct: 123 DASTKS-----------FIGERSKRKVGVG--DMVRARITGVSY----VAQKEGLD--LA 163
Query: 175 MVINGSIDYDGLGPVSW 191
+ I ++ GLG + W
Sbjct: 164 VRITMTMRGPGLGKLEW 180
>gi|302659535|ref|XP_003021456.1| DNA-directed RNA polymerase III complex subunit Rpc25
[Trichophyton verrucosum HKI 0517]
gi|291185357|gb|EFE40838.1| DNA-directed RNA polymerase III complex subunit Rpc25
[Trichophyton verrucosum HKI 0517]
Length = 104
Score = 44.7 bits (104), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 28/97 (28%), Positives = 50/97 (51%), Gaps = 13/97 (13%)
Query: 1 MFYLSKIEHTLRLPPHLLRLPLNEAIKLELENVFLDKVIANLGLC------ISIYDIKEI 54
MF++ +EH L L P + E + +L LD V G+C + + D+ +I
Sbjct: 1 MFFIHFLEHVLTLHPSFFGSHVKEYLSQKL----LDDV---EGICTGDYYIVCVMDMYDI 53
Query: 55 EGGFVYPGEGASTHTVKFRLVVFRPFVGEIIAAKLKE 91
G + PG G + +T+ +R +V++PF GE + + K+
Sbjct: 54 SEGKIIPGSGLAEYTIVYRAIVWKPFKGETVRDRDKK 90
>gi|50305083|ref|XP_452500.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
gi|49641633|emb|CAH01351.1| KLLA0C06787p [Kluyveromyces lactis]
Length = 171
Score = 44.7 bits (104), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 33/135 (24%), Positives = 57/135 (42%), Gaps = 7/135 (5%)
Query: 1 MFYLSKIEHTLRLPPHLLRLPLNEAIKLELENVFLDKVIANLGLCISIYDIK--EIEGGF 58
MF+ + + L P + + +L G + + D + EIE G
Sbjct: 1 MFFFKDLSLNITLHPSFFGPQMKRYLMTKLLQEVEGTCTGKFGYILCVLDCENIEIERGR 60
Query: 59 VYPGEGASTHTVKFRLVVFRPFVGEIIAAKLKESDANGLRLSLGFFEDIYVPSHLLPSP- 117
+ P +G++ TVK+R VV++PF GE++ + G + +G ++V L+P
Sbjct: 61 ILPTDGSAEFTVKYRAVVWKPFKGEVLDGIVSSCTNLGFEVEVGPL-SVFVSPFLMPEDL 119
Query: 118 ---SRSEPDPYGRYE 129
S S P Y E
Sbjct: 120 TFNSGSNPPSYQSSE 134
>gi|398411600|ref|XP_003857138.1| hypothetical protein MYCGRDRAFT_66842 [Zymoseptoria tritici IPO323]
gi|339477023|gb|EGP92114.1| hypothetical protein MYCGRDRAFT_66842 [Zymoseptoria tritici IPO323]
Length = 167
Score = 44.7 bits (104), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 27/116 (23%), Positives = 56/116 (48%), Gaps = 2/116 (1%)
Query: 1 MFYLSKIEHTLRLPPHLLRLPLNEAIKLELENVFLDKVIANLGLCISIYDIKEIEGGFVY 60
MF++ ++ + + P E I L+ ++ I + I I D+++I +
Sbjct: 1 MFFVKNMDREVTIHPSYFNSDA-EKIVLDRLRADIEGTIEGTLMVIRIVDVEDISEPKLQ 59
Query: 61 PGEGASTHTVKFRLVVFRPFVGEIIAAKLKESDANGLRLSLGFFEDIYVPSHLLPS 116
PG G + + + +R +V+RPF GE++ + NG + +G ++V ++PS
Sbjct: 60 PGTGMAVYHLHYRAIVWRPFRGEVVDGLVSSVVNNGFFVDVGALS-VFVSKAMIPS 114
>gi|392564925|gb|EIW58102.1| hypothetical protein TRAVEDRAFT_167523 [Trametes versicolor
FP-101664 SS1]
Length = 170
Score = 44.3 bits (103), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 28/128 (21%), Positives = 57/128 (44%), Gaps = 11/128 (8%)
Query: 1 MFYLSKIEHTLRLPPHLLRLPLNEAIKLELENVFLDKVIANLGLCISIYDIKEIEGGFVY 60
MF++ ++ HT+ L P + ++ +L + G I++ I +I G V
Sbjct: 1 MFFIKELSHTILLHPSYFGPRMLNFLESKLYSDVEGTCSGEFGYIIAVVSILDIGKGMVL 60
Query: 61 PGEGASTHTVKFRLVVFRPFVGEIIAAKLKESDANGLRLSLGFFED-----IYVPSHLLP 115
G G + ++R +VF+PF G+++ + +GFF D ++V L+
Sbjct: 61 AGSGQAEFVTRYRAIVFKPFKGQVVDGVVNNVT------KMGFFADVGPLTVFVSHQLIH 114
Query: 116 SPSRSEPD 123
+ +P+
Sbjct: 115 PDMKFDPN 122
>gi|219851265|ref|YP_002465697.1| DNA-directed RNA polymerase subunit E' [Methanosphaerula palustris
E1-9c]
gi|219545524|gb|ACL15974.1| DNA-directed RNA polymerase [Methanosphaerula palustris E1-9c]
Length = 199
Score = 44.3 bits (103), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 29/102 (28%), Positives = 52/102 (50%)
Query: 1 MFYLSKIEHTLRLPPHLLRLPLNEAIKLELENVFLDKVIANLGLCISIYDIKEIEGGFVY 60
M+Y +E +R+PPH L L + I L+ + +G+ I++ + E+ G +
Sbjct: 1 MYYKLLLEDKVRVPPHRLGEDLIKVILDVLQEQLEGSIDKEIGIFIAVTKVIEVGEGEMV 60
Query: 61 PGEGASTHTVKFRLVVFRPFVGEIIAAKLKESDANGLRLSLG 102
PG+GA + VKF + R + E++ + E+ G +SLG
Sbjct: 61 PGDGAVYYDVKFEALGLRLSLQEVLEGVVVETTTFGAFVSLG 102
>gi|147806099|emb|CAN72211.1| hypothetical protein VITISV_012255 [Vitis vinifera]
Length = 1256
Score = 44.3 bits (103), Expect = 0.023, Method: Composition-based stats.
Identities = 19/32 (59%), Positives = 26/32 (81%)
Query: 147 DEIKFRVLSVNYPSIPIEQAEGSKPFAPMVIN 178
D+I+F+V SV+Y +PIEQ + SKPFA MVI+
Sbjct: 1219 DKIRFQVQSVSYSPVPIEQRKESKPFASMVIS 1250
>gi|393221726|gb|EJD07210.1| hypothetical protein FOMMEDRAFT_137613 [Fomitiporia mediterranea
MF3/22]
Length = 170
Score = 44.3 bits (103), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 22/83 (26%), Positives = 41/83 (49%)
Query: 1 MFYLSKIEHTLRLPPHLLRLPLNEAIKLELENVFLDKVIANLGLCISIYDIKEIEGGFVY 60
MF++ ++ HT+ L P + + ++ +L G I++ + +I G V
Sbjct: 1 MFFIKELTHTILLHPSYFGPRMLQFLETKLYADVEGTCSGQFGYIIAVVSVLDIGKGMVL 60
Query: 61 PGEGASTHTVKFRLVVFRPFVGE 83
PG G + ++R +VF+PF GE
Sbjct: 61 PGSGQAEFVTRYRAIVFKPFKGE 83
>gi|424813921|ref|ZP_18239099.1| DNA-directed RNA polymerase, rpoE [Candidatus Nanosalina sp.
J07AB43]
gi|339757537|gb|EGQ42794.1| DNA-directed RNA polymerase, rpoE [Candidatus Nanosalina sp.
J07AB43]
Length = 189
Score = 44.3 bits (103), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 25/114 (21%), Positives = 56/114 (49%)
Query: 1 MFYLSKIEHTLRLPPHLLRLPLNEAIKLELENVFLDKVIANLGLCISIYDIKEIEGGFVY 60
M+ + ++R+PP L L E+IK L++ + G+ +S+ I IEGG +
Sbjct: 1 MYNRLDVADSIRVPPKNLGEDLEESIKQALKDNVEGTISKEAGVVLSVDTINSIEGGEIE 60
Query: 61 PGEGASTHTVKFRLVVFRPFVGEIIAAKLKESDANGLRLSLGFFEDIYVPSHLL 114
P + + ++ VV+ P + E++ ++ + + G + +G + + S ++
Sbjct: 61 PEDAGVHYETEYEAVVYEPEMKEVVNGEVVDITSFGAFIRIGPLDGLCHVSQIM 114
>gi|429963922|gb|ELA45920.1| hypothetical protein VCUG_02589 [Vavraia culicis 'floridensis']
Length = 155
Score = 44.3 bits (103), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 30/123 (24%), Positives = 58/123 (47%), Gaps = 5/123 (4%)
Query: 1 MFYLSKIEHTLRLPPHLLRLPLNEAIKLELENVFLDKVIANLGLCISIYDIKEIEGGFVY 60
MF++S++ HT+ L P+ L A++ L ++ G +++ I+ + G V
Sbjct: 1 MFFISELSHTIHLSPNYFDTNLQYAVRSHLLEEVEGACSSDHGFILAVISIQNV-GEAVL 59
Query: 61 PGEGASTHTVKFRLVVFRPFVGEIIAAKLKESDANGLRLSLG----FFEDIYVPSHLLPS 116
G+ VK+ + +P E+I AK+ E + GL +G F + +P++L S
Sbjct: 60 NHMGSVLFKVKYTAITLKPVRNEVIEAKVDEVNKMGLFAHIGPLSIFVSNYQIPNNLQES 119
Query: 117 PSR 119
+
Sbjct: 120 IKK 122
>gi|296085628|emb|CBI29417.3| unnamed protein product [Vitis vinifera]
Length = 44
Score = 44.3 bits (103), Expect = 0.026, Method: Composition-based stats.
Identities = 20/31 (64%), Positives = 26/31 (83%)
Query: 7 IEHTLRLPPHLLRLPLNEAIKLELENVFLDK 37
+EH L+L PHLL LPL+EA+K E E++FLDK
Sbjct: 1 MEHRLQLRPHLLDLPLSEAVKGEFESLFLDK 31
>gi|147919758|ref|YP_686496.1| DNA-directed RNA polymerase subunit E' [Methanocella arvoryzae
MRE50]
gi|110621892|emb|CAJ37170.1| DNA-directed RNA polymerase, subunit E [Methanocella arvoryzae
MRE50]
Length = 194
Score = 44.3 bits (103), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 27/102 (26%), Positives = 49/102 (48%)
Query: 1 MFYLSKIEHTLRLPPHLLRLPLNEAIKLELENVFLDKVIANLGLCISIYDIKEIEGGFVY 60
M+ ++ +R+PP L L + I L ++ LG +++ D+ EI G +
Sbjct: 1 MYRKVRLVDIIRIPPQRLEEDLEKVISETLREKLEGRIDKTLGSIVAVTDVVEIGEGHIL 60
Query: 61 PGEGASTHTVKFRLVVFRPFVGEIIAAKLKESDANGLRLSLG 102
G+GA + V F + ++P EII + E A G +++G
Sbjct: 61 VGDGAVYYEVTFDAIAYKPEQQEIIEGSVVEIVAFGAFIAVG 102
>gi|440491704|gb|ELQ74318.1| DNA-directed RNA polymerase subunit E' [Trachipleistophora hominis]
Length = 155
Score = 44.3 bits (103), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 30/123 (24%), Positives = 57/123 (46%), Gaps = 5/123 (4%)
Query: 1 MFYLSKIEHTLRLPPHLLRLPLNEAIKLELENVFLDKVIANLGLCISIYDIKEIEGGFVY 60
MF++S++ HT+ L P+ L A++ L ++ G +++ I+ + G V
Sbjct: 1 MFFISELSHTIHLSPNYFDTNLQYAVRSHLLEEVEGACSSDHGFILAVLSIQNV-GEAVL 59
Query: 61 PGEGASTHTVKFRLVVFRPFVGEIIAAKLKESDANGLRLSLG----FFEDIYVPSHLLPS 116
G+ VK+ + +P E+I K+ E + GL +G F + +PS+L S
Sbjct: 60 NHMGSVLFKVKYTAITLKPVRNEVIEVKVDEVNTMGLFAHIGPLSIFVSNYQIPSNLQES 119
Query: 117 PSR 119
+
Sbjct: 120 IKK 122
>gi|301099953|ref|XP_002899067.1| DNA-directed RNA polymerase II 19 kDa polypeptide [Phytophthora
infestans T30-4]
gi|262104379|gb|EEY62431.1| DNA-directed RNA polymerase II 19 kDa polypeptide [Phytophthora
infestans T30-4]
Length = 177
Score = 44.3 bits (103), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 29/123 (23%), Positives = 57/123 (46%), Gaps = 13/123 (10%)
Query: 1 MFYLSKIEHTLRLPPHLLRLPLNEAIKLELENVFLDKVIANLGLCISIYDIKE--IEGGF 58
MF+L ++ L L P L++ I+L L + G I++ ++++ I G
Sbjct: 1 MFFLKQLSRDLLLHPMHFGPKLHDIIRLRLIEEVEGTSMGKYGYVITVTEVRDEDIGKGV 60
Query: 59 VYPGEGASTHTVKFRLVVFRPFVGEIIAAKLKESDANGLRLSLGFFED-----IYVPSHL 113
+ G +++R ++FRPF +++ A + + LGFF D ++V H
Sbjct: 61 IQDNSGFVCFNIRYRAILFRPFKNQVLDAVVTVVN------QLGFFADVGPLQVFVSRHA 114
Query: 114 LPS 116
+P+
Sbjct: 115 MPT 117
>gi|348674301|gb|EGZ14120.1| hypothetical protein PHYSODRAFT_303395 [Phytophthora sojae]
Length = 168
Score = 44.3 bits (103), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 29/123 (23%), Positives = 57/123 (46%), Gaps = 13/123 (10%)
Query: 1 MFYLSKIEHTLRLPPHLLRLPLNEAIKLELENVFLDKVIANLGLCISIYDIKE--IEGGF 58
MF+L ++ L L P L++ I+L L + G I++ ++++ I G
Sbjct: 1 MFFLKQLSRDLLLHPMHFGPKLHDIIRLRLIEEVEGTSMGKYGYVITVTEVRDEDIGKGV 60
Query: 59 VYPGEGASTHTVKFRLVVFRPFVGEIIAAKLKESDANGLRLSLGFFED-----IYVPSHL 113
+ G +++R ++FRPF +++ A + + LGFF D ++V H
Sbjct: 61 IQDNSGFVCFNIRYRAILFRPFKNQVLDAVVTVVN------QLGFFADVGPLQVFVSRHA 114
Query: 114 LPS 116
+P+
Sbjct: 115 MPT 117
>gi|219118585|ref|XP_002180062.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
gi|217408319|gb|EEC48253.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
Length = 181
Score = 44.3 bits (103), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 33/122 (27%), Positives = 56/122 (45%), Gaps = 13/122 (10%)
Query: 1 MFYLSKIEHTLRLPPHLLRLPLNEAIKLELENVFLDKVIANLGLCISIYDIKE--IEGGF 58
MFY+ ++H + L P L I L+ +AN G +++ ++ E I G
Sbjct: 1 MFYVKTLDHEIVLEPVHFGPKLKATIVRLLKEHVEGLALANYGYVVNVIEVPEDQIRSGI 60
Query: 59 VYPGEGASTHTVKFRLVVFRPFVGEIIAAKLKESDANGLRLSLGFFE-----DIYVPSHL 113
+ G TVK+ ++ RPF+ E++ A + + +A LGFF I+V H
Sbjct: 61 IEYDTGNVVFTVKYTALLLRPFLNEVLDAVVTQCNA------LGFFAFCGPLRIFVSKHS 114
Query: 114 LP 115
+P
Sbjct: 115 MP 116
>gi|121719878|ref|XP_001276637.1| RNA polymerase II subunit 7 [Aspergillus clavatus NRRL 1]
gi|119404849|gb|EAW15211.1| RNA polymerase II subunit 7 [Aspergillus clavatus NRRL 1]
Length = 169
Score = 44.3 bits (103), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 44/78 (56%), Gaps = 1/78 (1%)
Query: 46 ISIYDIKEIEGGFVYPGEGASTHTVKFRLVVFRPFVGEIIAAKLKESDANGLRLSLGFFE 105
I + D+ +I G V PG G++ +T+K+R ++++PF GE + A + G+ +L
Sbjct: 45 ICVMDMVDIGEGRVLPGSGSAEYTIKYRAIIWKPFRGETVDAIVTSVKPTGI-FTLAGPL 103
Query: 106 DIYVPSHLLPSPSRSEPD 123
+++ +PS + EP+
Sbjct: 104 SVFIARKNIPSDIKWEPN 121
>gi|296423748|ref|XP_002841415.1| hypothetical protein [Tuber melanosporum Mel28]
gi|295637653|emb|CAZ85606.1| unnamed protein product [Tuber melanosporum]
Length = 180
Score = 44.3 bits (103), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 28/122 (22%), Positives = 58/122 (47%), Gaps = 2/122 (1%)
Query: 1 MFYLSKIEHTLRLPPHLLRLPLNEAIKLELENVFLDKVIANLGLCISIYDIKEIEGGFVY 60
MF++ ++ T+ L P + + + +L ++ I + + + I G +
Sbjct: 1 MFFIHELNRTITLHPSYFGPHMRDYLIHKLHED-VEGSCTGRYFIICVIEYENITLGRII 59
Query: 61 PGEGASTHTVKFRLVVFRPFVGEIIAAKLKESDANGLRLSLGFFEDIYVPSHLLPSPSRS 120
PG+G + T+ ++ VV+RPF GE + + + G +G ++V SHL+P +
Sbjct: 60 PGKGDAEFTITYKAVVWRPFKGETVDGVVSSVNKMGFFAEVGPLT-VFVSSHLIPRDIKF 118
Query: 121 EP 122
+P
Sbjct: 119 DP 120
>gi|339252426|ref|XP_003371436.1| DNA-directed RNA polymerase II subunit RPB7 [Trichinella spiralis]
gi|316968324|gb|EFV52617.1| DNA-directed RNA polymerase II subunit RPB7 [Trichinella spiralis]
Length = 172
Score = 43.9 bits (102), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 28/115 (24%), Positives = 52/115 (45%), Gaps = 1/115 (0%)
Query: 1 MFYLSKIEHTLRLPPHLLRLPLNEAIKLELENVFLDKVIANLGLCISIYDIKEIEGGFVY 60
MF+L +EH + L P L ++ +L + + G I++ I I G V
Sbjct: 1 MFFLMNLEHDVLLHPRYFGPHLYNTVRQKLILEVEGQCMGKYGFIITVTGILSIGAGLVQ 60
Query: 61 PGEGASTHTVKFRLVVFRPFVGEIIAAKLKESDANGLRLSLGFFEDIYVPSHLLP 115
G G +K++ VV+RP E++ +++ GL +G +++ H +P
Sbjct: 61 SGCGFVRFPIKYQAVVYRPIKNEVVEGRVENVSKLGLFCLVGPLT-VFISRHCIP 114
>gi|451849958|gb|EMD63261.1| hypothetical protein COCSADRAFT_38126 [Cochliobolus sativus ND90Pr]
gi|452001764|gb|EMD94223.1| hypothetical protein COCHEDRAFT_1202004 [Cochliobolus
heterostrophus C5]
Length = 171
Score = 43.9 bits (102), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 29/116 (25%), Positives = 55/116 (47%), Gaps = 2/116 (1%)
Query: 1 MFYLSKIEHTLRLPPHLLRLPLNEAIKLELENVFLDKVIANLGLCISIYDIKEIEGGFVY 60
MF+L ++E T++L P + + I EL + + I D +I G V
Sbjct: 1 MFFLKELEKTIQLHPSYFGPLIRQHIHRELLQKEEGSSTGKYTI-VCILDSFDISDGKVM 59
Query: 61 PGEGASTHTVKFRLVVFRPFVGEIIAAKLKESDANGLRLSLGFFEDIYVPSHLLPS 116
PG G++ + V ++ VV+RP+ GE++ + G + G + +V ++P+
Sbjct: 60 PGSGSAEYVVHYKAVVWRPYKGEVMDGIVTSVLRTGFFVDCGSLQ-AFVGRSMIPA 114
>gi|70983430|ref|XP_747242.1| DNA-directed RNA polymerase III subunit 22.9 kDa [Aspergillus
fumigatus Af293]
gi|66844868|gb|EAL85204.1| DNA-directed RNA polymerase III subunit 22.9 kDa, putative
[Aspergillus fumigatus Af293]
gi|159123752|gb|EDP48871.1| DNA-directed RNA polymerase III subunit 22.9 kDa, putative
[Aspergillus fumigatus A1163]
Length = 112
Score = 43.9 bits (102), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 36/119 (30%), Positives = 59/119 (49%), Gaps = 17/119 (14%)
Query: 83 EIIAAKLKESDANGLRLSLGFFEDIYVPSHLLPSPSRSEPDPYGRYEVKWIWEFGD-TKY 141
+++ A+ + AN + + FF DI +P LL +R + + W+WE D + +
Sbjct: 2 QLLQARGHHAHANTKAVGVEFFNDILIPPDLLLDGAR-----FDIADQVWVWENEDGSTF 56
Query: 142 VIDGLDEIKFRVLSVNY----PSIPIEQAEGS----KPFAPMVINGSIDYDGLGPVSWW 192
D + ++FRV + P+ P + +G+ KP P I GS+ GLGPVSWW
Sbjct: 57 YFDIGEIVRFRVEMEEWHDQIPNAP-DLGDGTTIERKP--PYSIIGSMQMAGLGPVSWW 112
>gi|189203085|ref|XP_001937878.1| DNA-directed RNA polymerase II 19 kDa polypeptide [Pyrenophora
tritici-repentis Pt-1C-BFP]
gi|330945443|ref|XP_003306557.1| hypothetical protein PTT_19733 [Pyrenophora teres f. teres 0-1]
gi|187984977|gb|EDU50465.1| DNA-directed RNA polymerase II 19 kDa polypeptide [Pyrenophora
tritici-repentis Pt-1C-BFP]
gi|311315891|gb|EFQ85355.1| hypothetical protein PTT_19733 [Pyrenophora teres f. teres 0-1]
Length = 171
Score = 43.9 bits (102), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 29/116 (25%), Positives = 55/116 (47%), Gaps = 2/116 (1%)
Query: 1 MFYLSKIEHTLRLPPHLLRLPLNEAIKLELENVFLDKVIANLGLCISIYDIKEIEGGFVY 60
MF+L ++E T++L P + + I EL + + I D +I G V
Sbjct: 1 MFFLKELEKTIQLHPSYFGPLIRQHIHRELLQKEEGSSTGKYTI-VCILDSFDISDGKVM 59
Query: 61 PGEGASTHTVKFRLVVFRPFVGEIIAAKLKESDANGLRLSLGFFEDIYVPSHLLPS 116
PG G++ + V ++ VV+RP+ GE++ + G + G + +V ++P+
Sbjct: 60 PGTGSAEYVVHYKAVVWRPYKGEVMDGIVTSVLRTGFFVDCGSLQ-AFVGRSMIPA 114
>gi|392575439|gb|EIW68572.1| hypothetical protein TREMEDRAFT_71846 [Tremella mesenterica DSM
1558]
Length = 172
Score = 43.9 bits (102), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 32/123 (26%), Positives = 58/123 (47%), Gaps = 1/123 (0%)
Query: 1 MFYLSKIEHTLRLPPHLLRLPLNEAIKLELENVFLDKVIANLGLCISIYDIKEIEGGFVY 60
MF+L ++ HT+ L P L E ++ +L G IS+ I I G V
Sbjct: 1 MFFLRELTHTILLHPSYFGSQLEEYLRQKLYEDVEGTCSGKYGYIISVITITSIGEGKVL 60
Query: 61 PGEGASTHTVKFRLVVFRPFVGEIIAAKLKESDANGLRLSLGFFEDIYVPSHLLPSPSRS 120
PG G + + +V +PF GE++ ++ + G +G + ++V SHL+ + +
Sbjct: 61 PGTGQARFKTTYTAIVMKPFKGEVVDGQVVNVNKMGFFAMVGPLQ-VFVSSHLVHADMKF 119
Query: 121 EPD 123
+P+
Sbjct: 120 DPN 122
>gi|119484588|ref|XP_001262073.1| RNA polymerase II subunit 7 [Neosartorya fischeri NRRL 181]
gi|119410229|gb|EAW20176.1| RNA polymerase II subunit 7 [Neosartorya fischeri NRRL 181]
Length = 167
Score = 43.9 bits (102), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 29/123 (23%), Positives = 57/123 (46%), Gaps = 2/123 (1%)
Query: 1 MFYLSKIEHTLRLPPHLLRLPLNEAIKLELENVFLDKVIANLGLCISIYDIKEIEGGFVY 60
MF+L + + L P + E + L + + I + D+ +I G V
Sbjct: 1 MFFLKEETKVISLHPSYFGPNMREYLINRLNEEEEGRCTGD-HFVICVMDMVDIGEGRVL 59
Query: 61 PGEGASTHTVKFRLVVFRPFVGEIIAAKLKESDANGLRLSLGFFEDIYVPSHLLPSPSRS 120
PG G + +T+K+R ++++PF GE + A + G+ +L +++ +PS +
Sbjct: 60 PGSGQAEYTIKYRAIIWKPFRGETVDAIVTSVKPTGI-FTLAGPLSVFIARKNIPSDIKW 118
Query: 121 EPD 123
EP+
Sbjct: 119 EPN 121
>gi|119872434|ref|YP_930441.1| DNA-directed RNA polymerase subunit E' [Pyrobaculum islandicum DSM
4184]
gi|119673842|gb|ABL88098.1| DNA-directed RNA polymerase, subunit E' [Pyrobaculum islandicum DSM
4184]
Length = 195
Score = 43.9 bits (102), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 28/112 (25%), Positives = 52/112 (46%), Gaps = 4/112 (3%)
Query: 2 FYLSKIEHTLRLPPHLLRLPLNEAIKLELENVFLDKVIANLGLCISIYDIKEIEGGFVYP 61
F L + E +R+PP PL + +L + + +V+ +G +++ K G +
Sbjct: 7 FRLVEAEDYVRIPPTEFGKPLEDIALQQLRSKYEGRVLREVGYVVAVLTAKVGREGRIVF 66
Query: 62 GEGASTHTVKFRLVVFRPFVGEIIAAKLKESDANGLRLS----LGFFEDIYV 109
G+G + H F ++ + P GEII ++ G+ + LGF I+V
Sbjct: 67 GDGGTYHRAVFTMLAYMPLDGEIIEGVVENVREMGMLVRIGPILGFINKIHV 118
>gi|409045255|gb|EKM54736.1| hypothetical protein PHACADRAFT_175251 [Phanerochaete carnosa
HHB-10118-sp]
Length = 170
Score = 43.5 bits (101), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 27/107 (25%), Positives = 49/107 (45%), Gaps = 6/107 (5%)
Query: 1 MFYLSKIEHTLRLPPHLLRLPLNEAIKLELENVFLDKVIANLGLCISIYDIKEIEGGFVY 60
MF++ ++ HT+ L P + + ++ +L G I++ I I G V
Sbjct: 1 MFFIKELTHTILLHPSYFGPRMLQYLESKLYADVEGTCSGQFGYIIAVVTILNIGEGMVL 60
Query: 61 PGEGASTHTVKFRLVVFRPFVGEIIAAKLKESDANGLRLSLGFFEDI 107
PG G + ++R +VF+PF GE++ + +GFF D+
Sbjct: 61 PGSGQAEFITRYRAIVFKPFKGEVVDGVVNNV------NKMGFFADV 101
>gi|392585942|gb|EIW75280.1| hypothetical protein CONPUDRAFT_132203 [Coniophora puteana
RWD-64-598 SS2]
Length = 170
Score = 43.5 bits (101), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 26/107 (24%), Positives = 49/107 (45%), Gaps = 6/107 (5%)
Query: 1 MFYLSKIEHTLRLPPHLLRLPLNEAIKLELENVFLDKVIANLGLCISIYDIKEIEGGFVY 60
MF++ ++ HT+ L P + + ++ +L G I++ I +I G V
Sbjct: 1 MFFIKELTHTILLHPSYFGPRMTQFLESKLYADVEGTCSGQFGYIIAVVSILDIGRGMVL 60
Query: 61 PGEGASTHTVKFRLVVFRPFVGEIIAAKLKESDANGLRLSLGFFEDI 107
G G + ++R +VF+PF GE++ + +GFF D+
Sbjct: 61 SGSGQAEFVTRYRAIVFKPFKGEVVDGVVNNV------NKMGFFADV 101
>gi|157865144|ref|XP_001681280.1| putative DNA-directed RNA polymerase III subunit [Leishmania major
strain Friedlin]
gi|68124575|emb|CAJ02857.1| putative DNA-directed RNA polymerase III subunit [Leishmania major
strain Friedlin]
Length = 263
Score = 43.5 bits (101), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 29/102 (28%), Positives = 50/102 (49%), Gaps = 2/102 (1%)
Query: 20 LPLNEAIKLELENVFLDKVIANLGLCISIYDIKEIEGGFVYPGEGASTHTVKFRLVVFRP 79
L L + + L ++ +VI + GLC++I ++ E V ++ TV F + VF P
Sbjct: 28 LTLRDILLHRLTERYVGRVIPSRGLCVAITEVMEYSASSVRGAAASAWLTVTFGVCVFAP 87
Query: 80 FVGEIIAAKLKESDANGLRLSLGFFEDI--YVPSHLLPSPSR 119
G + A++ A G+ L++ F I VP+ +L SR
Sbjct: 88 NPGTRLKARIAYQTAVGVYLTMDLFVAIPFLVPAEMLVPGSR 129
>gi|145253060|ref|XP_001398043.1| DNA-directed RNA polymerase II subunit rpb7 [Aspergillus niger CBS
513.88]
gi|134083601|emb|CAL00516.1| unnamed protein product [Aspergillus niger]
gi|350633119|gb|EHA21485.1| DNA-directed RNA polymerase II [Aspergillus niger ATCC 1015]
gi|358372658|dbj|GAA89260.1| RNA polymerase II subunit 7 [Aspergillus kawachii IFO 4308]
Length = 167
Score = 43.5 bits (101), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 43/78 (55%), Gaps = 1/78 (1%)
Query: 46 ISIYDIKEIEGGFVYPGEGASTHTVKFRLVVFRPFVGEIIAAKLKESDANGLRLSLGFFE 105
I + D+ +I G V PG G + +T+K+R ++++PF GE + A + G+ +L
Sbjct: 45 ICVMDMVDIGEGRVLPGSGQAEYTIKYRAIIWKPFRGETVDAIVTSVKPTGI-FTLAGPL 103
Query: 106 DIYVPSHLLPSPSRSEPD 123
+++ +PS + EP+
Sbjct: 104 SVFIARKNIPSDIKWEPN 121
>gi|322705624|gb|EFY97208.1| putative DNA-directed RNA polymerase II chain Rpb7 [Metarhizium
anisopliae ARSEF 23]
Length = 128
Score = 43.5 bits (101), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 42/83 (50%), Gaps = 1/83 (1%)
Query: 1 MFYLSKIEHTLRLPPHLLRLPLNEAIKLELENVFLDKVIANLGLCISIYDIKEIEGGFVY 60
MF+L +E + L P ++E + +L ++ A ISI D +I G +
Sbjct: 1 MFFLYNMERRVTLHPSYFGRNMHELVTSKLLKD-VEGTCAGSYYIISIMDTFDISEGRIL 59
Query: 61 PGEGASTHTVKFRLVVFRPFVGE 83
PG G + TV +R VV+RPF GE
Sbjct: 60 PGNGLAEFTVGYRAVVWRPFKGE 82
>gi|146078551|ref|XP_001463569.1| putative DNA-directed RNA polymerase III subunit [Leishmania
infantum JPCM5]
gi|134067655|emb|CAM65934.1| putative DNA-directed RNA polymerase III subunit [Leishmania
infantum JPCM5]
Length = 297
Score = 43.5 bits (101), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 31/107 (28%), Positives = 50/107 (46%), Gaps = 10/107 (9%)
Query: 23 NEAIKLELENVFL--------DKVIANLGLCISIYDIKEIEGGFVYPGEGASTHTVKFRL 74
NE L L ++ L +VI + GLC++I ++ E V ++ TV F +
Sbjct: 57 NECYSLTLRDILLHRLTERYVGRVIPSRGLCVAITEVMEYSASSVRGAAASAWLTVTFGV 116
Query: 75 VVFRPFVGEIIAAKLKESDANGLRLSLGFFEDI--YVPSHLLPSPSR 119
VF P G + A++ A G+ L++ F I VP+ +L SR
Sbjct: 117 CVFAPNPGTRLKARIAYQTAAGVYLTMDLFVAIPFLVPAEMLVPGSR 163
>gi|398011190|ref|XP_003858791.1| DNA-directed RNA polymerase III subunit, putative [Leishmania
donovani]
gi|322497001|emb|CBZ32071.1| DNA-directed RNA polymerase III subunit, putative [Leishmania
donovani]
Length = 297
Score = 43.5 bits (101), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 31/107 (28%), Positives = 50/107 (46%), Gaps = 10/107 (9%)
Query: 23 NEAIKLELENVFL--------DKVIANLGLCISIYDIKEIEGGFVYPGEGASTHTVKFRL 74
NE L L ++ L +VI + GLC++I ++ E V ++ TV F +
Sbjct: 57 NECYSLTLRDILLHRLTERYVGRVIPSRGLCVAITEVMEYSASSVRGAAASAWLTVTFGV 116
Query: 75 VVFRPFVGEIIAAKLKESDANGLRLSLGFFEDI--YVPSHLLPSPSR 119
VF P G + A++ A G+ L++ F I VP+ +L SR
Sbjct: 117 CVFAPNPGTRLKARIAYQTAAGVYLTMDLFVAIPFLVPAEMLVPGSR 163
>gi|390596943|gb|EIN06344.1| hypothetical protein PUNSTDRAFT_73661 [Punctularia strigosozonata
HHB-11173 SS5]
Length = 186
Score = 43.1 bits (100), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 24/101 (23%), Positives = 46/101 (45%)
Query: 2 FYLSKIEHTLRLPPHLLRLPLNEAIKLELENVFLDKVIANLGLCISIYDIKEIEGGFVYP 61
F ++EHT+ L P + + ++ +L G IS+ + +I G + P
Sbjct: 11 FTQKELEHTILLHPSYFGPRMLQYLESKLHADVEGTCSGKYGYIISVVTLMDIGRGTILP 70
Query: 62 GEGASTHTVKFRLVVFRPFVGEIIAAKLKESDANGLRLSLG 102
G G + ++R +VF+PF GE++ + + G +G
Sbjct: 71 GSGQAEFVARYRAIVFKPFKGEVVDGIVNNVNKMGFFCEVG 111
>gi|432332214|ref|YP_007250357.1| DNA-directed RNA polymerase subunit E' [Methanoregula formicicum
SMSP]
gi|432138923|gb|AGB03850.1| DNA-directed RNA polymerase subunit E' [Methanoregula formicicum
SMSP]
Length = 213
Score = 43.1 bits (100), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 27/102 (26%), Positives = 51/102 (50%)
Query: 1 MFYLSKIEHTLRLPPHLLRLPLNEAIKLELENVFLDKVIANLGLCISIYDIKEIEGGFVY 60
M++ +E +R+PP L L + I L+ + +G+ I + + ++ G +
Sbjct: 1 MYHKLMLEDKVRVPPQRLGENLEKVILDVLQEQLEGSIDKEIGIFICVTKVTDVGEGELV 60
Query: 61 PGEGASTHTVKFRLVVFRPFVGEIIAAKLKESDANGLRLSLG 102
PG+G + VKF +V R + E+I + E+ + G +SLG
Sbjct: 61 PGDGGVYYDVKFEALVLRLALQEVIEGVVVETTSFGAFVSLG 102
>gi|327400738|ref|YP_004341577.1| DNA-directed RNA polymerase [Archaeoglobus veneficus SNP6]
gi|327316246|gb|AEA46862.1| DNA-directed RNA polymerase [Archaeoglobus veneficus SNP6]
Length = 189
Score = 43.1 bits (100), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 43/81 (53%)
Query: 1 MFYLSKIEHTLRLPPHLLRLPLNEAIKLELENVFLDKVIANLGLCISIYDIKEIEGGFVY 60
M+ ++ T+R+PP L + E I+ L F ++ G+ I I +I++I G +
Sbjct: 1 MYARIRVRDTVRVPPTRLGEDIEEVIRDLLWEQFEGRLDREYGMLIGIENIEDIGEGRII 60
Query: 61 PGEGASTHTVKFRLVVFRPFV 81
G+GA V+F +VF+P +
Sbjct: 61 EGDGAVYFDVEFTAIVFKPLL 81
>gi|171185361|ref|YP_001794280.1| DNA-directed RNA polymerase subunit E' [Pyrobaculum neutrophilum
V24Sta]
gi|170934573|gb|ACB39834.1| RNA polymerase Rpb7 domain protein [Pyrobaculum neutrophilum
V24Sta]
Length = 191
Score = 43.1 bits (100), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 42/197 (21%), Positives = 86/197 (43%), Gaps = 26/197 (13%)
Query: 2 FYLSKIEHTLRLPPHLLRLPLNEAIKLELENVFLDKVIANLGLCISIYDIKEIEGGFVYP 61
F + + E +R+PP PL + +L+ + +V+ +G +++ K G +
Sbjct: 3 FRVVEAEDYVRIPPADFGKPLEDIALQQLKARYEGRVLREVGYVVAVLTAKVSREGKIVF 62
Query: 62 GEGASTHTVKFRLVVFRPFVGEIIAAKLKESDANGLRLS----LGFFEDIYV---PSHLL 114
G+G + H F ++ + P GEI+ ++ G+ + LGF I+V P+ L
Sbjct: 63 GDGGTYHKALFTMLAYMPLDGEIVEGVVENVREMGMLVRIGPVLGFINKIHVMDEPNILF 122
Query: 115 PSPSRSEPDPYGRYEVKWIWEFGDTKYVIDGLDEIKFRVLSVNYPSIPIEQAEGSKPFAP 174
+ ++S +I E TK + D ++ R+ V++ + EG+
Sbjct: 123 DASTKS-----------YIGE--RTKRRVGVGDVVRARITGVSFTT----PREGTDLLLR 165
Query: 175 MVINGSIDYDGLGPVSW 191
+ + ++ GLG + W
Sbjct: 166 VTL--TMRMPGLGKLEW 180
>gi|170106467|ref|XP_001884445.1| predicted protein [Laccaria bicolor S238N-H82]
gi|164640791|gb|EDR05055.1| predicted protein [Laccaria bicolor S238N-H82]
Length = 170
Score = 43.1 bits (100), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 30/128 (23%), Positives = 57/128 (44%), Gaps = 11/128 (8%)
Query: 1 MFYLSKIEHTLRLPPHLLRLPLNEAIKLELENVFLDKVIANLGLCISIYDIKEIEGGFVY 60
MF++ ++ HT+ L P + ++ +L + G I++ I +I G V
Sbjct: 1 MFFIKELTHTILLHPSYFGPRMLNFLESKLYSDVEGTCSGQFGYIIAVVSILDIGKGMVL 60
Query: 61 PGEGASTHTVKFRLVVFRPFVGEIIAAKLKESDANGLRLSLGFFED-----IYVPSHLLP 115
G G + ++R +VF+PF GE++ + +GFF D ++V L+
Sbjct: 61 SGSGQAEFITRYRAIVFKPFKGEVVDGVVNNV------NKMGFFADVGPLTVFVSHQLIH 114
Query: 116 SPSRSEPD 123
R +P+
Sbjct: 115 PDMRFDPN 122
>gi|260944176|ref|XP_002616386.1| hypothetical protein CLUG_03627 [Clavispora lusitaniae ATCC 42720]
gi|238850035|gb|EEQ39499.1| hypothetical protein CLUG_03627 [Clavispora lusitaniae ATCC 42720]
Length = 141
Score = 43.1 bits (100), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 44/90 (48%), Gaps = 13/90 (14%)
Query: 40 ANLGLCISIYDIKEIE--GGFVYPGEGASTHTVKFRLVVFRPFVGEIIAAKLKESDANGL 97
G + + D I+ G + PG G + VK+R VV++PF GE++ A + +
Sbjct: 8 GQFGYIVCVLDCMNIDVGRGRIIPGSGMAEFEVKYRAVVWKPFKGEVVDAVVTTVN---- 63
Query: 98 RLSLGFFED-----IYVPSHLLPSPSRSEP 122
+GFF D ++V +HL+ S + P
Sbjct: 64 --KMGFFADVGPLSVFVSTHLISSDMKFNP 91
>gi|126460593|ref|YP_001056871.1| DNA-directed RNA polymerase subunit E' [Pyrobaculum calidifontis
JCM 11548]
gi|126250314|gb|ABO09405.1| DNA-directed RNA polymerase, subunit E' [Pyrobaculum calidifontis
JCM 11548]
Length = 194
Score = 43.1 bits (100), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 26/117 (22%), Positives = 56/117 (47%)
Query: 2 FYLSKIEHTLRLPPHLLRLPLNEAIKLELENVFLDKVIANLGLCISIYDIKEIEGGFVYP 61
F L + E +R+PP PL + +L+ + ++V+ +G +++ +K G +
Sbjct: 3 FKLVEAEDYVRIPPSEFGKPLEDIALAQLKARYENRVVREVGYVVAVLSVKVKREGKIIF 62
Query: 62 GEGASTHTVKFRLVVFRPFVGEIIAAKLKESDANGLRLSLGFFEDIYVPSHLLPSPS 118
G+G + H +F L+ F P GE++ ++ G+ + +G H++ P+
Sbjct: 63 GDGGTYHKARFTLLAFVPLDGEVVEGVVENVREVGMLVRIGPIVGFINKIHVMDEPN 119
>gi|315425802|dbj|BAJ47456.1| DNA-directed RNA polymerase subunit E' [Candidatus Caldiarchaeum
subterraneum]
gi|315425826|dbj|BAJ47479.1| DNA-directed RNA polymerase subunit E' [Candidatus Caldiarchaeum
subterraneum]
gi|315427684|dbj|BAJ49280.1| DNA-directed RNA polymerase subunit E' [Candidatus Caldiarchaeum
subterraneum]
gi|343484641|dbj|BAJ50295.1| DNA-directed RNA polymerase subunit E' [Candidatus Caldiarchaeum
subterraneum]
Length = 187
Score = 43.1 bits (100), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 26/102 (25%), Positives = 48/102 (47%)
Query: 1 MFYLSKIEHTLRLPPHLLRLPLNEAIKLELENVFLDKVIANLGLCISIYDIKEIEGGFVY 60
MF L ++ + +PP PL + + EL + V LG I + D K + G +
Sbjct: 1 MFMLVEVSEIVGIPPADFGKPLEKVVLNELRKRYEGAVDEELGYIIMVIDAKVDKVGRIL 60
Query: 61 PGEGASTHTVKFRLVVFRPFVGEIIAAKLKESDANGLRLSLG 102
P +G++ H F L+ + P + E++ ++ E G + +G
Sbjct: 61 PRDGSTYHRSTFTLLTYMPLLNEVVLGEVVEITDFGCFVRIG 102
>gi|288932566|ref|YP_003436626.1| DNA-directed RNA polymerase [Ferroglobus placidus DSM 10642]
gi|288894814|gb|ADC66351.1| DNA-directed RNA polymerase [Ferroglobus placidus DSM 10642]
Length = 188
Score = 42.7 bits (99), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 40/158 (25%), Positives = 75/158 (47%), Gaps = 9/158 (5%)
Query: 1 MFYLSKIEHTLRLPPHLLRLPLNEAIKLELENVFLDKVIANLGLCISIYDIKEIEGGFVY 60
M+ KI T+R+PP+ L + E I L F K+ G+ + I I+EI G +
Sbjct: 1 MYARVKIRDTVRVPPNRLGEDMEEVINELLWEQFEGKLDREYGMIVGIESIEEIGEGRII 60
Query: 61 PGEGASTHTVKFRLVVFRPFVGEIIAAKLKESDANGLRLSLGFFEDIYVPSHLLPSPSRS 120
G+G V F + F+P + E++ ++ E G +S+G + + S ++
Sbjct: 61 EGDGGVYFDVIFNAITFKPLLQEVVEGEVVEIVEFGAFVSIGPMDGLLHMSQIM------ 114
Query: 121 EPDPYGRYEVKWIWEFG-DTKYVIDGLDEIKFRVLSVN 157
D Y Y+ K G +TK ++ D ++ R+++++
Sbjct: 115 --DDYIVYDEKNKRLVGKETKRSLEEGDAVRVRIVALS 150
>gi|242210404|ref|XP_002471045.1| predicted protein [Postia placenta Mad-698-R]
gi|220729947|gb|EED83813.1| predicted protein [Postia placenta Mad-698-R]
Length = 170
Score = 42.7 bits (99), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 26/107 (24%), Positives = 50/107 (46%), Gaps = 6/107 (5%)
Query: 1 MFYLSKIEHTLRLPPHLLRLPLNEAIKLELENVFLDKVIANLGLCISIYDIKEIEGGFVY 60
MF++ ++ HT+ L P + + ++ +L + G I++ I +I G V
Sbjct: 1 MFFIKELSHTILLHPSYFGPRMLQFLESKLYSDVEGTCSGQFGYIIAVVSILDIGKGMVI 60
Query: 61 PGEGASTHTVKFRLVVFRPFVGEIIAAKLKESDANGLRLSLGFFEDI 107
G G + ++R +VF+PF GE++ + +GFF D+
Sbjct: 61 SGSGQAEFITRYRAIVFKPFKGEVVDGVVNNV------NKMGFFADV 101
>gi|212545789|ref|XP_002153048.1| RNA polymerase II subunit 7 [Talaromyces marneffei ATCC 18224]
gi|210064568|gb|EEA18663.1| RNA polymerase II subunit 7 [Talaromyces marneffei ATCC 18224]
Length = 169
Score = 42.7 bits (99), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 29/122 (23%), Positives = 56/122 (45%), Gaps = 2/122 (1%)
Query: 1 MFYLSKIEHTLRLPPHLLRLPLNEAIKLELENVFLDKVIANLGLCISIYDIKEIEGGFVY 60
MF+L + + L P + E + L + + I + D+ +I G V
Sbjct: 1 MFFLKEETKVVTLHPSFFGPNVKEYLINRLNEEEEGRCTGD-HFVICVMDMVDIGDGRVI 59
Query: 61 PGEGASTHTVKFRLVVFRPFVGEIIAAKLKESDANGLRLSLGFFEDIYVPSHLLPSPSRS 120
PG G + +T+K+R ++++PF GE + A + G+ +L +++ +PS +
Sbjct: 60 PGSGHAEYTIKYRAIIWKPFRGETVDAIVTSVKPTGI-FTLAGPLSVFIARKNIPSDIKW 118
Query: 121 EP 122
EP
Sbjct: 119 EP 120
>gi|409081234|gb|EKM81593.1| hypothetical protein AGABI1DRAFT_111877 [Agaricus bisporus var.
burnettii JB137-S8]
gi|426196468|gb|EKV46396.1| hypothetical protein AGABI2DRAFT_193120 [Agaricus bisporus var.
bisporus H97]
Length = 170
Score = 42.7 bits (99), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 29/128 (22%), Positives = 57/128 (44%), Gaps = 11/128 (8%)
Query: 1 MFYLSKIEHTLRLPPHLLRLPLNEAIKLELENVFLDKVIANLGLCISIYDIKEIEGGFVY 60
MF++ ++ HT+ L P + ++ +L + G I++ I +I G V
Sbjct: 1 MFFIKELTHTILLHPSYFGPRMLSFLESKLYSDVEGTCSGQFGYIIAVVSILDIGKGMVL 60
Query: 61 PGEGASTHTVKFRLVVFRPFVGEIIAAKLKESDANGLRLSLGFFED-----IYVPSHLLP 115
G G + ++R +VF+PF GE++ + +GFF D +++ L+
Sbjct: 61 SGSGQAEFVTRYRAIVFKPFKGEVVDGVVNNV------NKMGFFADAGPLTVFISHQLIH 114
Query: 116 SPSRSEPD 123
R +P+
Sbjct: 115 PNMRFDPN 122
>gi|150400715|ref|YP_001324481.1| DNA-directed RNA polymerase subunit E' [Methanococcus aeolicus
Nankai-3]
gi|150013418|gb|ABR55869.1| DNA-directed RNA polymerase [Methanococcus aeolicus Nankai-3]
Length = 195
Score = 42.7 bits (99), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 52/192 (27%), Positives = 93/192 (48%), Gaps = 18/192 (9%)
Query: 1 MFYLSKIEHTLRLPPHLLRLPLNEAIKLELENVFLDKVIANLGLCISIYDIKEIEGGFVY 60
M+ L I T+R+PP + PL ++I L + + + G +SI DI EI GG V
Sbjct: 1 MYKLITISDTIRVPPKMFGAPLKDSIHKILMEKYEGLMDKDFGFIMSIGDIGEIGGGKVV 60
Query: 61 PGEGASTHTVKFRLVVFRPFVGEIIAAKLKESDANGLRLSLGFFEDIYVPSHLLPSPSRS 120
G+GA+ H F L+ + P + EII ++ + GL + LG + + S ++
Sbjct: 61 YGDGAAYHPAIFDLLCYEPELYEIIEGEIVDVVEFGLFVRLGPLDGLIHISQIM------ 114
Query: 121 EPDPYGRYEVKWIWEFG-DTKYVIDGLDEIKFRVLSVNYPSIPIEQAEGSKPFAPMVING 179
D + Y+ + G ++ VI+ D+++ R++++ S+ + GSK I
Sbjct: 115 --DDFVSYDPQRGAIIGKESGKVIEKGDKVRARIVAI---SLREAKRRGSK------IAL 163
Query: 180 SIDYDGLGPVSW 191
++ GLG + W
Sbjct: 164 TMRQQGLGKLEW 175
>gi|408404449|ref|YP_006862432.1| DNA-directed RNA polymerase, subunit E` [Candidatus
Nitrososphaera gargensis Ga9.2]
gi|408365045|gb|AFU58775.1| DNA-directed RNA polymerase, subunit E` [Candidatus
Nitrososphaera gargensis Ga9.2]
Length = 196
Score = 42.7 bits (99), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 25/91 (27%), Positives = 45/91 (49%)
Query: 1 MFYLSKIEHTLRLPPHLLRLPLNEAIKLELENVFLDKVIANLGLCISIYDIKEIEGGFVY 60
MF + + +R+PP+ L L +A L+ + + ++G I I D G +
Sbjct: 1 MFAIVHMSDVVRIPPNRLTHSLKDAAIQILKEKYESMISPDVGYVIMITDADTSSVGKLV 60
Query: 61 PGEGASTHTVKFRLVVFRPFVGEIIAAKLKE 91
G+GA+ H V F+ + F P + EI+ ++ E
Sbjct: 61 AGDGATYHKVTFKALTFYPKLQEIVEGEVVE 91
>gi|16082590|ref|NP_394548.1| DNA-directed RNA polymerase subunit E' [Thermoplasma acidophilum
DSM 1728]
Length = 192
Score = 42.7 bits (99), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 47/201 (23%), Positives = 89/201 (44%), Gaps = 26/201 (12%)
Query: 1 MFYLSKIEHTLRLPPHLL----RLPLNEAIKLELENVFLD----KVIANLG--LCISIYD 50
M+ L + ++ R+PP +L + + E K LE +D K N G L IS+
Sbjct: 1 MYMLVEDKYIARVPPEMLGEDYDVAVREVTKRSLEGRLVDVINEKTSQNEGKYLVISVLY 60
Query: 51 IKEIEGGFVYPGEGASTHTVKFRLVVFRPFVGEIIAAKLKESDANGLRLSLGFFEDIYVP 110
+ I G + G+G VK+R +V+ P + EI+ ++ G + FE +
Sbjct: 61 TESIGEGTIVHGDGGVYQEVKYRALVYYPEMQEIVDGEVVSVQKFGAFIKFSSFEGLLHI 120
Query: 111 SHLLPSPSRSEPDPYGRYEVKWIWEFGDTKYVIDGLDEIKFRVLSVNYPSIPIEQAEGSK 170
S ++ R + D + ++I + +TK + D ++ R++++N S I ++
Sbjct: 121 SQIM--DDRIDIDLENK---RFIGK--ETKRDLKVGDRVRVRIVAMNLASSSISDSK--- 170
Query: 171 PFAPMVINGSIDYDGLGPVSW 191
I ++ GLG + W
Sbjct: 171 ------IGFTMKQVGLGKLDW 185
>gi|242820484|ref|XP_002487519.1| RNA polymerase II subunit 7 [Talaromyces stipitatus ATCC 10500]
gi|218713984|gb|EED13408.1| RNA polymerase II subunit 7 [Talaromyces stipitatus ATCC 10500]
Length = 169
Score = 42.4 bits (98), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 29/122 (23%), Positives = 56/122 (45%), Gaps = 2/122 (1%)
Query: 1 MFYLSKIEHTLRLPPHLLRLPLNEAIKLELENVFLDKVIANLGLCISIYDIKEIEGGFVY 60
MF+L + + L P + E + L + + I + D+ +I G V
Sbjct: 1 MFFLKEETKVVTLHPSFFGPNVKEYLVNRLNEEEEGRCTGD-HFVICVMDMVDIGEGRVI 59
Query: 61 PGEGASTHTVKFRLVVFRPFVGEIIAAKLKESDANGLRLSLGFFEDIYVPSHLLPSPSRS 120
PG G + +T+K+R ++++PF GE + A + G+ +L +++ +PS +
Sbjct: 60 PGSGHAEYTIKYRAIIWKPFRGETVDAIVTSVKPTGI-FTLAGPLSVFIARKNIPSDIKW 118
Query: 121 EP 122
EP
Sbjct: 119 EP 120
>gi|389739088|gb|EIM80282.1| hypothetical protein STEHIDRAFT_105350 [Stereum hirsutum FP-91666
SS1]
Length = 170
Score = 42.4 bits (98), Expect = 0.093, Method: Compositional matrix adjust.
Identities = 26/107 (24%), Positives = 50/107 (46%), Gaps = 6/107 (5%)
Query: 1 MFYLSKIEHTLRLPPHLLRLPLNEAIKLELENVFLDKVIANLGLCISIYDIKEIEGGFVY 60
MF++ ++ HT+ L P + + ++ +L + G I++ I +I G V
Sbjct: 1 MFFIKELTHTILLHPSYFGPRMLQFLESKLYSDVEGTCSGQFGYIIAVVSILDIGKGMVL 60
Query: 61 PGEGASTHTVKFRLVVFRPFVGEIIAAKLKESDANGLRLSLGFFEDI 107
G G + ++R +VF+PF GE++ + +GFF D+
Sbjct: 61 GGSGQAEFVTRYRAIVFKPFKGEVVDGVVNNV------NKMGFFADV 101
>gi|281204945|gb|EFA79139.1| RNA polymerase II core subunit [Polysphondylium pallidum PN500]
Length = 1025
Score = 42.4 bits (98), Expect = 0.093, Method: Composition-based stats.
Identities = 24/79 (30%), Positives = 41/79 (51%), Gaps = 11/79 (13%)
Query: 43 GLCISIYDIKEIEGGFVYPGEGASTHTVKFRLVVFRPFVGEIIAAKLKESDANGLRLSLG 102
G I+I + + G V G VK+R ++F+PF GE++ A + + +LG
Sbjct: 788 GFIITITSVDFVSRGKVLESTGYVVLPVKYRAIIFKPFKGEVLDAVVTKVT------NLG 841
Query: 103 FFED-----IYVPSHLLPS 116
FF + I+V +HL+P+
Sbjct: 842 FFAEAGPLTIFVSTHLIPT 860
>gi|325968980|ref|YP_004245172.1| DNA-directed RNA polymerase [Vulcanisaeta moutnovskia 768-28]
gi|323708183|gb|ADY01670.1| DNA-directed RNA polymerase [Vulcanisaeta moutnovskia 768-28]
Length = 197
Score = 42.4 bits (98), Expect = 0.094, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 44/80 (55%)
Query: 1 MFYLSKIEHTLRLPPHLLRLPLNEAIKLELENVFLDKVIANLGLCISIYDIKEIEGGFVY 60
MF + +E +R+PP PL L ++ +V ++G+ ++I+D++ G V
Sbjct: 1 MFRVLTLEDHIRIPPSRFGEPLERVAFEVLWGEYVGRVERDVGVYVAIFDVEVSRRGVVI 60
Query: 61 PGEGASTHTVKFRLVVFRPF 80
G+GA+ + V+F+ +V+ P
Sbjct: 61 FGDGATYNRVRFKALVYTPL 80
>gi|452819737|gb|EME26790.1| DNA-directed RNA polymerase II subunit G [Galdieria sulphuraria]
Length = 173
Score = 42.4 bits (98), Expect = 0.098, Method: Compositional matrix adjust.
Identities = 28/116 (24%), Positives = 56/116 (48%), Gaps = 2/116 (1%)
Query: 2 FYLSKIEHTLRLPPHLLRLPLNEAIKLELENVFLDKVIANLGLCISIYDIKE-IEGGFVY 60
F+ ++ +R+ P L E + L + V G +S+ ++ + + G +
Sbjct: 3 FFQVELTKNVRVHPRHFHSKLKETLIQTLMDEVEGTVSGRFGFVVSVLEVLQPLPKGILR 62
Query: 61 PGEGASTHTVKFRLVVFRPFVGEIIAAKLKESDANGLRLSLGFFEDIYVPSHLLPS 116
G G + + +K++ +VFRPF GE++ A + +G+ +G I+V H +PS
Sbjct: 63 EGFGFAVYPLKYKALVFRPFKGEVLDAVVTNVTRHGIFAQVGPL-TIFVSRHQIPS 117
>gi|359415612|ref|ZP_09208044.1| DNA-directed RNA polymerase subunit E' [Candidatus Haloredivivus
sp. G17]
gi|358034031|gb|EHK02504.1| DNA-directed RNA polymerase subunit E' [Candidatus Haloredivivus
sp. G17]
Length = 189
Score = 42.0 bits (97), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 26/105 (24%), Positives = 57/105 (54%), Gaps = 1/105 (0%)
Query: 1 MFYLSKIEHTLRLPPHLLRLPLNEAIKLELENVFLDKVIANLGLCISIYDIKEIEGGFVY 60
M+ IE ++R+PP L + E++ L+ ++ +++G+ I I ++KEIEGG +
Sbjct: 1 MYKRLTIEDSVRVPPEHLGGDVEESVLNGLKEKE-GEIHSDIGVIIGIEEVKEIEGGDIE 59
Query: 61 PGEGASTHTVKFRLVVFRPFVGEIIAAKLKESDANGLRLSLGFFE 105
P + + ++ +VF P + E++ ++ + G + +G F+
Sbjct: 60 PEDAGVHYNAVYKALVFEPELHEVVTGEVVDLTEFGAFVRIGPFD 104
>gi|297735501|emb|CBI17941.3| unnamed protein product [Vitis vinifera]
Length = 60
Score = 42.0 bits (97), Expect = 0.11, Method: Composition-based stats.
Identities = 17/26 (65%), Positives = 21/26 (80%)
Query: 99 LSLGFFEDIYVPSHLLPSPSRSEPDP 124
LSLGFFED+Y HL+P+PS EP+P
Sbjct: 35 LSLGFFEDVYRLVHLMPNPSHCEPNP 60
>gi|401416589|ref|XP_003872789.1| DNA-directed RNA polymerase III subunit,putative [Leishmania
mexicana MHOM/GT/2001/U1103]
gi|322489014|emb|CBZ24263.1| DNA-directed RNA polymerase III subunit,putative [Leishmania
mexicana MHOM/GT/2001/U1103]
Length = 297
Score = 42.0 bits (97), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 28/102 (27%), Positives = 50/102 (49%), Gaps = 2/102 (1%)
Query: 20 LPLNEAIKLELENVFLDKVIANLGLCISIYDIKEIEGGFVYPGEGASTHTVKFRLVVFRP 79
L L + + L ++ +VI + GLC++I ++ + V ++ TV F + VF P
Sbjct: 62 LTLRDILLHRLTERYVGRVIPSRGLCVAITEVIDYSASSVRGAAASAWLTVTFGVCVFAP 121
Query: 80 FVGEIIAAKLKESDANGLRLSLGFFEDI--YVPSHLLPSPSR 119
G + A++ A G+ L++ F I VP+ +L SR
Sbjct: 122 NPGTRLKARIAYQTAAGVYLTMNLFVAIPFLVPAGMLVPGSR 163
>gi|210075719|ref|XP_002143054.1| YALI0D11627p [Yarrowia lipolytica]
gi|199425798|emb|CAR64319.1| YALI0D11627p [Yarrowia lipolytica CLIB122]
Length = 190
Score = 42.0 bits (97), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 39/75 (52%), Gaps = 11/75 (14%)
Query: 53 EIEGGFVYPGEGASTHTVKFRLVVFRPFVGEIIAAKLKESDANGLRLSLGFFED-----I 107
+I G V P G++ TV +R +V+RPF E++ A + + +GFF D +
Sbjct: 74 DIGKGRVVPSNGSAEFTVNYRAIVWRPFKNEVVDAIVTNVN------KMGFFGDVGPLSV 127
Query: 108 YVPSHLLPSPSRSEP 122
+V SHL+P + P
Sbjct: 128 FVSSHLIPPDMKFNP 142
>gi|88604096|ref|YP_504274.1| DNA-directed RNA polymerase subunit E' [Methanospirillum hungatei
JF-1]
gi|88189558|gb|ABD42555.1| DNA-directed RNA polymerase, subunit E' [Methanospirillum hungatei
JF-1]
Length = 190
Score = 42.0 bits (97), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 29/102 (28%), Positives = 50/102 (49%)
Query: 1 MFYLSKIEHTLRLPPHLLRLPLNEAIKLELENVFLDKVIANLGLCISIYDIKEIEGGFVY 60
M+Y ++ +R+PPH L L I L+ + +G+ I++ + I G +
Sbjct: 1 MYYRLELIDKVRVPPHRLGEDLTTVILDVLQEQLEGSIDKEIGIFIAVTKVLRIGEGEMV 60
Query: 61 PGEGASTHTVKFRLVVFRPFVGEIIAAKLKESDANGLRLSLG 102
PG+GA + V F + R + EII + E+ + G +SLG
Sbjct: 61 PGDGAVYYDVDFEGLALRLSLQEIIEGIVVETTSFGAFVSLG 102
>gi|159467891|ref|XP_001692125.1| DNA-directed RNA polymerase II, 19 kDa polypeptide [Chlamydomonas
reinhardtii]
gi|158278852|gb|EDP04615.1| DNA-directed RNA polymerase II, 19 kDa polypeptide [Chlamydomonas
reinhardtii]
Length = 176
Score = 42.0 bits (97), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 34/159 (21%), Positives = 65/159 (40%), Gaps = 8/159 (5%)
Query: 1 MFYLSKIEHTLRLPPHLLRLPLNEAIKLELENVFLDKVIANLGLCISIYDIKEIEGGFVY 60
MFY + +L + P L E I+ +L G +++ + +I G +
Sbjct: 1 MFYFLTLSKSLDIHPKHFGSKLREVIREKLIAETEGTCTGKYGYVVAVTKVDDIGRGRIR 60
Query: 61 PGE-GASTHTVKFRLVVFRPFVGEIIAAKLKESDANGLRLSLGFFEDIYVPSHLLPSPSR 119
+ G +T V + +V RP+ GE++ A + + G G + ++V HL+P
Sbjct: 61 QDQSGYATFEVSYGCIVCRPYKGEVLDAVVTSVNKMGFFAQAGPLQ-LFVTQHLIPDEFE 119
Query: 120 SEPDPYGRYEVKWIWEFGDTKYVIDGLDEIKFRVLSVNY 158
+ + WI D I G ++ R++ + Y
Sbjct: 120 FDTSD----DNSWISM--DQTTRIQGGTHVRIRIVGIKY 152
>gi|440463722|gb|ELQ33276.1| DNA-directed rna polymerase III 25 kD polypeptide [Magnaporthe
oryzae Y34]
gi|440483688|gb|ELQ64037.1| DNA-directed rna polymerase III 25 kD polypeptide [Magnaporthe
oryzae P131]
Length = 114
Score = 41.6 bits (96), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 41/82 (50%), Gaps = 2/82 (2%)
Query: 1 MFYLSKIEHTLRLPPHLLRLPLNEAIKLELENVFLDKVIANLGLCISIYDIKEIEGGFVY 60
MF L+KI +++ P +AI+ L + +KVI +GLCI +YD+ G +
Sbjct: 1 MFILTKIADLVQIKPAQFAKLSIDAIEDNLNEKYCNKVIQKVGLCICMYDLLWASEGLIG 60
Query: 61 PGEGASTHTVK--FRLVVFRPF 80
G+G V+ F +F PF
Sbjct: 61 HGDGLVNVNVRTDFFDDIFVPF 82
>gi|435850763|ref|YP_007312349.1| DNA-directed RNA polymerase subunit E' [Methanomethylovorans
hollandica DSM 15978]
gi|433661393|gb|AGB48819.1| DNA-directed RNA polymerase subunit E' [Methanomethylovorans
hollandica DSM 15978]
Length = 190
Score = 41.6 bits (96), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 21/81 (25%), Positives = 43/81 (53%)
Query: 1 MFYLSKIEHTLRLPPHLLRLPLNEAIKLELENVFLDKVIANLGLCISIYDIKEIEGGFVY 60
M+ K+ T+R+ P+LL + +K L ++ ++G ++I +I+++ G +
Sbjct: 1 MYKKMKLSDTIRVAPNLLGGDVQVNVKNALREKLEGRLDKHIGAIVAITEIEQVGEGHIL 60
Query: 61 PGEGASTHTVKFRLVVFRPFV 81
G+GA + V F +VF P +
Sbjct: 61 VGDGAVYYDVDFDAIVFTPMI 81
>gi|328871329|gb|EGG19700.1| RFT1 family protein [Dictyostelium fasciculatum]
Length = 662
Score = 41.6 bits (96), Expect = 0.15, Method: Composition-based stats.
Identities = 23/78 (29%), Positives = 40/78 (51%), Gaps = 11/78 (14%)
Query: 43 GLCISIYDIKEIEGGFVYPGEGASTHTVKFRLVVFRPFVGEIIAAKLKESDANGLRLSLG 102
G I+I + + G V G VK++ ++F+PF GE++ A + + +LG
Sbjct: 534 GFIITITSVDFVSKGKVLESSGYVVFQVKYKAIIFKPFKGEVMDAVVTKVT------NLG 587
Query: 103 FFED-----IYVPSHLLP 115
FF + I+V +HL+P
Sbjct: 588 FFAEAGPLTIFVSTHLIP 605
>gi|425765811|gb|EKV04459.1| RNA polymerase II subunit 7 [Penicillium digitatum PHI26]
gi|425783900|gb|EKV21717.1| RNA polymerase II subunit 7 [Penicillium digitatum Pd1]
Length = 169
Score = 41.6 bits (96), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 21/78 (26%), Positives = 43/78 (55%), Gaps = 1/78 (1%)
Query: 46 ISIYDIKEIEGGFVYPGEGASTHTVKFRLVVFRPFVGEIIAAKLKESDANGLRLSLGFFE 105
I + D+ +I G V PG G + +T+++R ++++PF GE + A + G+ +L
Sbjct: 45 ICVMDMVDIGEGRVMPGIGQAEYTIRYRAIIWKPFRGETVDAIVTSVKPTGI-FTLAGPL 103
Query: 106 DIYVPSHLLPSPSRSEPD 123
+++ +PS + EP+
Sbjct: 104 SVFIARKNIPSDIKWEPN 121
>gi|162605728|ref|XP_001713379.1| RNA polymerase II RPB7 subunit-like protein [Guillardia theta]
gi|13794311|gb|AAK39688.1|AF083031_45 RNA polymerase II RPB7 subunit-like protein [Guillardia theta]
Length = 196
Score = 41.6 bits (96), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 38/165 (23%), Positives = 74/165 (44%), Gaps = 9/165 (5%)
Query: 1 MFYLSKIEHTLRLPPHLLRLPLNEAIKLELENVFLDKVIANLGLCISIYDIKEIE-GGFV 59
M+ + + L +P LL L + +L + N+G I I +I + G +
Sbjct: 27 MYAIMTLNQNLFIPAKLLNNQLKSTLIAQLITLTEGLPFGNVGSIIMIINIDNQKLYGKI 86
Query: 60 YPGEGASTHTVKFRLVVFRPFVGEIIAAKLKESDANGLRLSLGFFEDIYVPSHLLPSPSR 119
PG + V F+ VV + F GEII A +K + G+ S G +I++ + +
Sbjct: 87 LPGFSSVLFKVNFQAVVLKIFKGEIIDAIVKNITSFGIFASAGIL-NIFISNKFISQDLI 145
Query: 120 SEPDPYGRYEVKWIWEFGDTKYVIDGLDEIKFRVLSVNYPSIPIE 164
S+ + + ++ F ++ I D I+ ++L++ Y + I+
Sbjct: 146 SQ-------QSQTLFNFKNSTINIKKNDIIRCKILNLKYNTGSIQ 183
>gi|169602421|ref|XP_001794632.1| hypothetical protein SNOG_04209 [Phaeosphaeria nodorum SN15]
gi|160706165|gb|EAT87969.2| hypothetical protein SNOG_04209 [Phaeosphaeria nodorum SN15]
Length = 188
Score = 41.6 bits (96), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 29/122 (23%), Positives = 52/122 (42%), Gaps = 1/122 (0%)
Query: 1 MFYLSKIEHTLRLPPHLLRLPLNEAIKLELENVFLDKVIANLGLCISIYDIKEIEGGFVY 60
MF+L ++E T++L P + I EL + + I D +I G V
Sbjct: 1 MFFLKELEKTIQLHPSYFGPLIRSHIHRELLQKEEGSSTGKYTI-VCILDAFDISDGKVL 59
Query: 61 PGEGASTHTVKFRLVVFRPFVGEIIAAKLKESDANGLRLSLGFFEDIYVPSHLLPSPSRS 120
PG G + + V ++ +V+RP+ GE++ + G + G + + +P S
Sbjct: 60 PGSGHAEYIVHYKAIVWRPYKGEVMDGVVTSVLRTGFFVDCGSLQAFVGRNVRMPCASCR 119
Query: 121 EP 122
P
Sbjct: 120 YP 121
>gi|255931335|ref|XP_002557224.1| Pc12g03390 [Penicillium chrysogenum Wisconsin 54-1255]
gi|211581843|emb|CAP79966.1| Pc12g03390 [Penicillium chrysogenum Wisconsin 54-1255]
Length = 167
Score = 41.6 bits (96), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 21/78 (26%), Positives = 43/78 (55%), Gaps = 1/78 (1%)
Query: 46 ISIYDIKEIEGGFVYPGEGASTHTVKFRLVVFRPFVGEIIAAKLKESDANGLRLSLGFFE 105
I + D+ +I G V PG G + +T+++R ++++PF GE + A + G+ +L
Sbjct: 45 ICVMDMVDIGEGRVMPGIGQAEYTIRYRAIIWKPFRGETVDAIVTSVKPTGI-FTLAGPL 103
Query: 106 DIYVPSHLLPSPSRSEPD 123
+++ +PS + EP+
Sbjct: 104 SVFIARKNIPSDIKWEPN 121
>gi|452987401|gb|EME87156.1| hypothetical protein MYCFIDRAFT_89029 [Pseudocercospora fijiensis
CIRAD86]
Length = 170
Score = 41.6 bits (96), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 26/116 (22%), Positives = 54/116 (46%), Gaps = 2/116 (1%)
Query: 1 MFYLSKIEHTLRLPPHLLRLPLNEAIKLELENVFLDKVIANLGLCISIYDIKEIEGGFVY 60
MF+++ + L P N I +L + + I + I I + +I +
Sbjct: 1 MFFVANRTREVVLHPSFFDSSANAKIIAKLYD-DMQGNIEGTEIVIQIIGVDDISEPVLV 59
Query: 61 PGEGASTHTVKFRLVVFRPFVGEIIAAKLKESDANGLRLSLGFFEDIYVPSHLLPS 116
PG G + + + +R +++RPF GE++ + +NG + +G ++V ++PS
Sbjct: 60 PGTGMAKYVLSYRAIIWRPFRGEVVDGLVTTVVSNGFFVEVGAMT-VFVSRSMIPS 114
>gi|409721676|ref|ZP_11269840.1| DNA-directed RNA polymerase subunit E' [Halococcus hamelinensis
100A6]
gi|448724828|ref|ZP_21707333.1| DNA-directed RNA polymerase subunit E' [Halococcus hamelinensis
100A6]
gi|445785037|gb|EMA35833.1| DNA-directed RNA polymerase subunit E' [Halococcus hamelinensis
100A6]
Length = 191
Score = 41.2 bits (95), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 24/95 (25%), Positives = 48/95 (50%), Gaps = 4/95 (4%)
Query: 1 MFYLSKIEHTLRLPPHLLRLPLNEAIKLELENVFLDKVIANLGLCISIYDIKEIEGGFVY 60
M+ ++ T+ +PPHLL + +K L++ ++ +G +S+ ++ +I G V
Sbjct: 1 MYKRVRLTDTIEVPPHLLADVSSTMVKHLLQDKLEGRLDEEVGSIVSVTEVHDIGDGRVL 60
Query: 61 PG----EGASTHTVKFRLVVFRPFVGEIIAAKLKE 91
PG EG+ + F + F P + E+I ++ E
Sbjct: 61 PGRRGHEGSVYYEADFDAITFDPQMQEVIDGEVVE 95
>gi|336368539|gb|EGN96882.1| hypothetical protein SERLA73DRAFT_185108 [Serpula lacrymans var.
lacrymans S7.3]
gi|336381330|gb|EGO22482.1| hypothetical protein SERLADRAFT_473371 [Serpula lacrymans var.
lacrymans S7.9]
Length = 170
Score = 41.2 bits (95), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 22/83 (26%), Positives = 41/83 (49%)
Query: 1 MFYLSKIEHTLRLPPHLLRLPLNEAIKLELENVFLDKVIANLGLCISIYDIKEIEGGFVY 60
MF++ ++ HT+ L P + + ++ +L + G I++ I +I G V
Sbjct: 1 MFFIKELTHTILLHPSYFGPRMLQFLESKLYSDVEGTCSGAFGYIIAVVSILDIGKGMVL 60
Query: 61 PGEGASTHTVKFRLVVFRPFVGE 83
G G + ++R +VF+PF GE
Sbjct: 61 SGSGQAEFITRYRAIVFKPFKGE 83
>gi|83765518|dbj|BAE55661.1| unnamed protein product [Aspergillus oryzae RIB40]
gi|391864670|gb|EIT73964.1| DNA-directed RNA polymerase subunit E' [Aspergillus oryzae 3.042]
Length = 169
Score = 41.2 bits (95), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 21/78 (26%), Positives = 42/78 (53%), Gaps = 1/78 (1%)
Query: 46 ISIYDIKEIEGGFVYPGEGASTHTVKFRLVVFRPFVGEIIAAKLKESDANGLRLSLGFFE 105
I + D+ +I G V P G + +T+K+R ++++PF GE + A + G+ +L
Sbjct: 45 ICVMDMVDIGEGRVLPSSGQAEYTIKYRAIIWKPFRGETVDAIVTSVKPTGI-FTLAGPL 103
Query: 106 DIYVPSHLLPSPSRSEPD 123
+++ +PS + EP+
Sbjct: 104 SVFIARKNIPSDIKWEPN 121
>gi|171684375|ref|XP_001907129.1| hypothetical protein [Podospora anserina S mat+]
gi|170942148|emb|CAP67800.1| unnamed protein product [Podospora anserina S mat+]
Length = 155
Score = 41.2 bits (95), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 34/59 (57%)
Query: 1 MFYLSKIEHTLRLPPHLLRLPLNEAIKLELENVFLDKVIANLGLCISIYDIKEIEGGFV 59
M+ ++KI ++L P EAI+ ++ + +KVI N+GLC+ ++DI + G +
Sbjct: 1 MWIVTKIADLVQLKPQDFYKTSLEAIEDKINEKYANKVIPNIGLCVCVWDITDASEGLI 59
>gi|238483091|ref|XP_002372784.1| RNA polymerase II subunit 7 [Aspergillus flavus NRRL3357]
gi|317139645|ref|XP_001817663.2| DNA-directed RNA polymerase II subunit rpb7 [Aspergillus oryzae
RIB40]
gi|220700834|gb|EED57172.1| RNA polymerase II subunit 7 [Aspergillus flavus NRRL3357]
Length = 191
Score = 41.2 bits (95), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 21/78 (26%), Positives = 42/78 (53%), Gaps = 1/78 (1%)
Query: 46 ISIYDIKEIEGGFVYPGEGASTHTVKFRLVVFRPFVGEIIAAKLKESDANGLRLSLGFFE 105
I + D+ +I G V P G + +T+K+R ++++PF GE + A + G+ +L
Sbjct: 45 ICVMDMVDIGEGRVLPSSGQAEYTIKYRAIIWKPFRGETVDAIVTSVKPTGI-FTLAGPL 103
Query: 106 DIYVPSHLLPSPSRSEPD 123
+++ +PS + EP+
Sbjct: 104 SVFIARKNIPSDIKWEPN 121
>gi|70983610|ref|XP_747332.1| RNA polymerase II subunit 7 [Aspergillus fumigatus Af293]
gi|66844958|gb|EAL85294.1| RNA polymerase II subunit 7 [Aspergillus fumigatus Af293]
gi|159123662|gb|EDP48781.1| RNA polymerase II subunit 7 [Aspergillus fumigatus A1163]
Length = 139
Score = 41.2 bits (95), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 23/86 (26%), Positives = 43/86 (50%), Gaps = 5/86 (5%)
Query: 46 ISIYDIKEIEGGFVYPGEGASTHTVKFRLVVFRPFVGEIIAAKLKESDANGL-----RLS 100
I + D+ +I G V PG G + +T+K+R ++++PF GE + A + G+ LS
Sbjct: 45 ICVMDMVDIGEGRVLPGSGQAEYTIKYRAIIWKPFRGETVDAIVTSVKPTGIFTLAGPLS 104
Query: 101 LGFFEDIYVPSHLLPSPSRSEPDPYG 126
+ + + ++P+ S YG
Sbjct: 105 VFIARKYLLSTRIMPTRSSKRGPVYG 130
>gi|149630078|ref|XP_001520183.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC8-like,
partial [Ornithorhynchus anatinus]
Length = 88
Score = 41.2 bits (95), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 34/63 (53%), Gaps = 9/63 (14%)
Query: 100 SLGFFEDIYVPSHLLPSPSRSEPDPYGRYEVKWIWEF----GDTKYVIDGLDEIKFRVLS 155
SLGFF+DI +P L P++ + E W+WE+ G +D +EI+FRV+
Sbjct: 1 SLGFFDDILIPPESLQQPAK-----FDEAEQVWVWEYETEEGAHDLYMDTGEEIRFRVVD 55
Query: 156 VNY 158
N+
Sbjct: 56 ENF 58
>gi|401827167|ref|XP_003887676.1| RNA polymerase II subunit 7 [Encephalitozoon hellem ATCC 50504]
gi|392998682|gb|AFM98695.1| RNA polymerase II subunit 7 [Encephalitozoon hellem ATCC 50504]
Length = 155
Score = 40.8 bits (94), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 33/120 (27%), Positives = 59/120 (49%), Gaps = 11/120 (9%)
Query: 1 MFYLSKIEHTLRLPPHLLRLPLNEAIKLELENVFLDKV---IANLGLCISIYDIKEI-EG 56
MF++ + L P L I+ +E L KV ++ G + + I EI E
Sbjct: 1 MFFVRDFVQNIHLSPSYL----GPNIQTLIEEYLLTKVEGSCSSSGYVVMVLSIDEISES 56
Query: 57 GFVYPGEGASTHTVKFRLVVFRPFVGEIIAAKLKESDANGLRLSLGFFEDIYVPSHLLPS 116
+ GE + TVK++ + +PF GEII A + E++ G+ S+G +++ +H +P+
Sbjct: 57 RIILTGE--TIFTVKYKALTLKPFKGEIIDANVVETNKMGVFASVGPLT-VFISNHQIPN 113
>gi|209882951|ref|XP_002142910.1| DNA-directed RNA polymerase II subunit RPB7 [Cryptosporidium muris
RN66]
gi|209558516|gb|EEA08561.1| DNA-directed RNA polymerase II subunit RPB7, putative
[Cryptosporidium muris RN66]
Length = 176
Score = 40.8 bits (94), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 26/115 (22%), Positives = 54/115 (46%)
Query: 1 MFYLSKIEHTLRLPPHLLRLPLNEAIKLELENVFLDKVIANLGLCISIYDIKEIEGGFVY 60
MF+ ++ + L P+ L +E I L + + I + G + + I + G +
Sbjct: 1 MFFFVELWKNISLSPNQLGPRYDEHIDDILRSQVEGQWITSFGYVVCVVRILLRQPGRIQ 60
Query: 61 PGEGASTHTVKFRLVVFRPFVGEIIAAKLKESDANGLRLSLGFFEDIYVPSHLLP 115
G G +K++ +V+RP GE+I ++ + G+ ++ G + ++V LP
Sbjct: 61 DGTGLIIVPIKYQAIVYRPMKGEVIDGTVESVNELGIIVNCGPLKRVFVSQSALP 115
>gi|302506791|ref|XP_003015352.1| hypothetical protein ARB_06475 [Arthroderma benhamiae CBS 112371]
gi|291178924|gb|EFE34712.1| hypothetical protein ARB_06475 [Arthroderma benhamiae CBS 112371]
Length = 219
Score = 40.8 bits (94), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 35/131 (26%), Positives = 58/131 (44%), Gaps = 20/131 (15%)
Query: 1 MFYLSKIEHTLRLPPH----LLRLPLNEAIKLELENVFLD--------KVIANLGLCISI 48
MF L+ I +++ P L + + + I + N +D +VI N+GLCI+
Sbjct: 1 MFILTTISDLVQISPEDFSKLSAVAIEDNINEKYANKMIDADGRLTEAQVIQNVGLCIAF 60
Query: 49 YDIKEIEGGFVYPGEGASTHTVKFRLVVFRPFVGEIIAAKLKESDANGLRLSLGFFEDIY 108
YD+ E G + G G + ++ E + +LK D + + + FF DI
Sbjct: 61 YDLLESSDGLIGHGTGLVNVNGEAQMQT------ETLLYQLK--DHMLIDIGVEFFNDII 112
Query: 109 VPSHLLPSPSR 119
VP LL +R
Sbjct: 113 VPPDLLLDGAR 123
>gi|255073033|ref|XP_002500191.1| predicted protein [Micromonas sp. RCC299]
gi|226515453|gb|ACO61449.1| predicted protein [Micromonas sp. RCC299]
Length = 185
Score = 40.4 bits (93), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 31/135 (22%), Positives = 55/135 (40%), Gaps = 13/135 (9%)
Query: 1 MFYLSKIEHTLRLPPHLLRLPLNEAIKLELENVFLDKVIANLGLCISIYDIKEIEGGFVY 60
MF+ K+E + L P + + + L++ G + + D I G V
Sbjct: 1 MFWHIKLERNIVLEPRFFGRNMRDTLMQRLKHEVEGSCTGKHGYIVMVTDFTNISEGMVT 60
Query: 61 P-GEGASTHTVKFRLVVFRPFVGEIIAAKLKESDANGLRLSLGFFE-----DIYVPSHLL 114
G + V+F + FRPF G+++ A + E + GFF +++V + L+
Sbjct: 61 DDGTARAKFRVEFDAIAFRPFKGQVLDAVVTEVN------KFGFFAEAGPMNLFVSNQLI 114
Query: 115 PSPSRSEP-DPYGRY 128
+ E D RY
Sbjct: 115 SDDMKFESIDNANRY 129
>gi|396081803|gb|AFN83418.1| DNA-directed RNA polymerase II subunit E' [Encephalitozoon romaleae
SJ-2008]
Length = 155
Score = 40.4 bits (93), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 32/120 (26%), Positives = 59/120 (49%), Gaps = 11/120 (9%)
Query: 1 MFYLSKIEHTLRLPPHLLRLPLNEAIKLELENVFLDKV---IANLGLCISIYDIKEI-EG 56
MF++ + L P L I+ +E L KV ++ G + + I E+ E
Sbjct: 1 MFFVRDFVQNIHLSPSYL----GPNIQTLIEEYLLSKVEGSCSSSGYVVMVLSIDEVSES 56
Query: 57 GFVYPGEGASTHTVKFRLVVFRPFVGEIIAAKLKESDANGLRLSLGFFEDIYVPSHLLPS 116
+ GE + TVK++ + +PF GEII A + E++ G+ S+G +++ +H +P+
Sbjct: 57 RIILTGE--TIFTVKYKALTLKPFKGEIIDANVVETNKMGVFASVGPLT-VFISNHQIPN 113
>gi|115396608|ref|XP_001213943.1| DNA-directed RNA polymerase II 19 kDa polypeptide [Aspergillus
terreus NIH2624]
gi|114193512|gb|EAU35212.1| DNA-directed RNA polymerase II 19 kDa polypeptide [Aspergillus
terreus NIH2624]
Length = 174
Score = 40.4 bits (93), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 21/78 (26%), Positives = 42/78 (53%), Gaps = 1/78 (1%)
Query: 46 ISIYDIKEIEGGFVYPGEGASTHTVKFRLVVFRPFVGEIIAAKLKESDANGLRLSLGFFE 105
I + D+ +I G V P G + +T+K+R ++++PF GE + A + G+ +L
Sbjct: 45 ICVMDMVDIGEGRVLPSSGHAEYTIKYRAIIWKPFRGETVDAIVTSVKPTGI-FTLAGPL 103
Query: 106 DIYVPSHLLPSPSRSEPD 123
+++ +PS + EP+
Sbjct: 104 AVFIARKNIPSDIKWEPN 121
>gi|268323238|emb|CBH36826.1| DNA-directed RNA polymerase subunit E' [uncultured archaeon]
Length = 201
Score = 40.0 bits (92), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 42/83 (50%)
Query: 9 HTLRLPPHLLRLPLNEAIKLELENVFLDKVIANLGLCISIYDIKEIEGGFVYPGEGASTH 68
+R+PP L L +K L++ ++ LG+ I+I DI +++ G + G+ +
Sbjct: 9 DVVRVPPERLGDDLRVVVKEMLQDRLEGRMDKKLGMFIAIQDIVDVKEGRIMIGDAGVYY 68
Query: 69 TVKFRLVVFRPFVGEIIAAKLKE 91
F +VFRP + EI+ + E
Sbjct: 69 ETIFDALVFRPKMQEIVEGAVVE 91
>gi|268325739|emb|CBH39327.1| DNA-directed RNA polymerase, subunit E [uncultured archaeon]
Length = 207
Score = 40.0 bits (92), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 42/83 (50%)
Query: 9 HTLRLPPHLLRLPLNEAIKLELENVFLDKVIANLGLCISIYDIKEIEGGFVYPGEGASTH 68
+R+PP L L +K L++ ++ LG+ I+I DI +++ G + G+ +
Sbjct: 9 DVVRVPPERLGDDLRVVVKEMLQDRLEGRMDKKLGMFIAIQDIVDVKEGRIMIGDAGVYY 68
Query: 69 TVKFRLVVFRPFVGEIIAAKLKE 91
F +VFRP + EI+ + E
Sbjct: 69 ETIFDALVFRPKMQEIVEGGVVE 91
>gi|10640403|emb|CAC12217.1| DNA-directed RNA polymerase, subunit E related protein
[Thermoplasma acidophilum]
Length = 189
Score = 39.7 bits (91), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 45/194 (23%), Positives = 85/194 (43%), Gaps = 26/194 (13%)
Query: 8 EHTLRLPPHLL----RLPLNEAIKLELENVFLD----KVIANLG--LCISIYDIKEIEGG 57
++ R+PP +L + + E K LE +D K N G L IS+ + I G
Sbjct: 5 KYIARVPPEMLGEDYDVAVREVTKRSLEGRLVDVINEKTSQNEGKYLVISVLYTESIGEG 64
Query: 58 FVYPGEGASTHTVKFRLVVFRPFVGEIIAAKLKESDANGLRLSLGFFEDIYVPSHLLPSP 117
+ G+G VK+R +V+ P + EI+ ++ G + FE + S ++
Sbjct: 65 TIVHGDGGVYQEVKYRALVYYPEMQEIVDGEVVSVQKFGAFIKFSSFEGLLHISQIM--D 122
Query: 118 SRSEPDPYGRYEVKWIWEFGDTKYVIDGLDEIKFRVLSVNYPSIPIEQAEGSKPFAPMVI 177
R + D + ++I + +TK + D ++ R++++N S I ++ I
Sbjct: 123 DRIDIDLENK---RFIGK--ETKRDLKVGDRVRVRIVAMNLASSSISDSK---------I 168
Query: 178 NGSIDYDGLGPVSW 191
++ GLG + W
Sbjct: 169 GFTMKQVGLGKLDW 182
>gi|402467510|gb|EJW02798.1| hypothetical protein EDEG_00255 [Edhazardia aedis USNM 41457]
Length = 157
Score = 39.7 bits (91), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 26/102 (25%), Positives = 48/102 (47%), Gaps = 1/102 (0%)
Query: 1 MFYLSKIEHTLRLPPHLLRLPLNEAIKLELENVFLDKVIANLGLCISIYDIKEIEGGFVY 60
MF+ ++ T+ +PP L + + I+ +L + GL I + DI I+GG +
Sbjct: 1 MFFTGELFQTIYIPPFELSHNITQIIQTKLYKTVVGTCSQENGLIIMVLDILTIDGGKI- 59
Query: 61 PGEGASTHTVKFRLVVFRPFVGEIIAAKLKESDANGLRLSLG 102
G V ++ ++ +P EII A + + +A G+ G
Sbjct: 60 STTGHVVFKVNYKALLLKPIKSEIIDAPIVDVNAMGVFCEAG 101
>gi|303390119|ref|XP_003073291.1| DNA-directed RNA polymerase II subunit E' [Encephalitozoon
intestinalis ATCC 50506]
gi|303302436|gb|ADM11931.1| DNA-directed RNA polymerase II subunit E' [Encephalitozoon
intestinalis ATCC 50506]
Length = 155
Score = 39.7 bits (91), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 32/120 (26%), Positives = 58/120 (48%), Gaps = 11/120 (9%)
Query: 1 MFYLSKIEHTLRLPPHLLRLPLNEAIKLELENVFLDKV---IANLGLCISIYDIKEI-EG 56
MF++ + L P L I+ +E L KV ++ G I + I EI E
Sbjct: 1 MFFVRDFTQNIHLSPSYL----GPNIQTLIEEYLLSKVEGSCSSSGYVIMVLSIDEISES 56
Query: 57 GFVYPGEGASTHTVKFRLVVFRPFVGEIIAAKLKESDANGLRLSLGFFEDIYVPSHLLPS 116
+ GE + TVK++ + +P GEI+ A + E++ G+ S+G +++ +H +P+
Sbjct: 57 RIILTGE--TIFTVKYKALTLKPLKGEIVDANVVETNKMGVFASVGPLT-VFISNHQIPN 113
>gi|90018178|gb|ABD83902.1| DNA directed RNA polymerase II polypeptide G [Ictalurus punctatus]
Length = 86
Score = 39.3 bits (90), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 24/91 (26%), Positives = 45/91 (49%), Gaps = 6/91 (6%)
Query: 64 GASTHTVKFRLVVFRPFVGEIIAAKLKESDANGLRLSLGFFEDIYVPSHLLPSPSRSEPD 123
S + VK++ +VFRPF GE++ A + + + GL +G ++ H +PS +P+
Sbjct: 1 SKSLYPVKYKAIVFRPFKGEVVDAVVTQVNKVGLFTEIGPM-SCFISRHSIPSEMEFDPN 59
Query: 124 PYGRYEVKWIWEFGDTKYVIDGLDEIKFRVL 154
++ D VI DEI+ +++
Sbjct: 60 SN-----PPCYKTVDEDVVIQQEDEIRLKIV 85
>gi|66811466|ref|XP_639913.1| DNA-directed RNA polymerase II subunit 7 [Dictyostelium discoideum
AX4]
gi|74854071|sp|Q54P04.1|RPB7_DICDI RecName: Full=DNA-directed RNA polymerase II subunit rpb7;
Short=RNA polymerase II subunit B7
gi|60466865|gb|EAL64909.1| DNA-directed RNA polymerase II subunit 7 [Dictyostelium discoideum
AX4]
Length = 172
Score = 38.9 bits (89), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 30/121 (24%), Positives = 52/121 (42%), Gaps = 11/121 (9%)
Query: 1 MFYLSKIEHTLRLPPHLLRLPLNEAIKLELENVFLDKVIANLGLCISIYDIKEIEGGFVY 60
MF+ +E L + P L +L + G I+I + + G V
Sbjct: 1 MFFHLTLEKDLHMHPKHCGPNLFTIATQQLYSEVEGTCTGRYGFIITITSVDFLSKGKVL 60
Query: 61 PGEGASTHTVKFRLVVFRPFVGEIIAAKLKESDANGLRLSLGFFED-----IYVPSHLLP 115
G VK++ ++F+PF GE++ A + + +LGFF + I+V + L+P
Sbjct: 61 ESSGYVVFNVKYKAIIFKPFKGEVLDAIVTKVT------NLGFFAEAGPLSIFVSTQLIP 114
Query: 116 S 116
S
Sbjct: 115 S 115
>gi|383318512|ref|YP_005379353.1| DNA-directed RNA polymerase subunit E' [Methanocella conradii
HZ254]
gi|379319882|gb|AFC98834.1| DNA-directed RNA polymerase, subunit E' [Methanocella conradii
HZ254]
Length = 194
Score = 38.9 bits (89), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 20/81 (24%), Positives = 40/81 (49%)
Query: 1 MFYLSKIEHTLRLPPHLLRLPLNEAIKLELENVFLDKVIANLGLCISIYDIKEIEGGFVY 60
M+ ++ +R+PP L L + I + + ++ LG +++ DI +I G +
Sbjct: 1 MYRKVRLVDIIRIPPQRLEEDLEQVINETIRDKLEGRIDKALGSIVAVLDIVDIGEGHIL 60
Query: 61 PGEGASTHTVKFRLVVFRPFV 81
G+GA + V F + +RP +
Sbjct: 61 IGDGAVYYEVTFDAIAYRPEL 81
>gi|154332928|ref|XP_001562726.1| putative DNA-directed RNA polymerase III subunit [Leishmania
braziliensis MHOM/BR/75/M2904]
gi|134059729|emb|CAM41851.1| putative DNA-directed RNA polymerase III subunit [Leishmania
braziliensis MHOM/BR/75/M2904]
Length = 295
Score = 38.9 bits (89), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 26/99 (26%), Positives = 49/99 (49%), Gaps = 3/99 (3%)
Query: 20 LPLNEAIKLELENVFLDKVIANLGLCISIYDIKEIEGGFVYPGEGASTHTVKFRLVVFRP 79
L L + + L ++ +VI + GLC++I ++ E V ++ T F + VF P
Sbjct: 62 LTLRDILLHRLTERYVGRVIPSRGLCVAITEVMEYSASSVRGAAASAWLTATFGVCVFAP 121
Query: 80 FVGEIIAAKLKESDANGLRLSLGFFEDIYVPSHLLPSPS 118
G + A++ A G+ L++ F + +P L+P+ S
Sbjct: 122 TPGTRLKARIAYQAAAGVYLTIDLF--VAIP-FLVPAES 157
>gi|19074596|ref|NP_586102.1| DNA-DIRECTED RNA POLYMERASE II 19kDa SUBUNIT [Encephalitozoon
cuniculi GB-M1]
gi|19069238|emb|CAD25706.1| DNA-DIRECTED RNA POLYMERASE II 19kDa SUBUNIT [Encephalitozoon
cuniculi GB-M1]
gi|449329612|gb|AGE95883.1| DNA-directed RNA polymerase II 19kDa subunit [Encephalitozoon
cuniculi]
Length = 155
Score = 38.9 bits (89), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 31/120 (25%), Positives = 59/120 (49%), Gaps = 11/120 (9%)
Query: 1 MFYLSKIEHTLRLPPHLLRLPLNEAIKLELENVFLDKV---IANLGLCISIYDIKEI-EG 56
MF++ + L P+ L I+ +E L KV ++ G + + I EI E
Sbjct: 1 MFFVRDFVQNIHLSPNYL----GPNIQALIEEYLLSKVEGSCSSSGYVVMVLSIDEISES 56
Query: 57 GFVYPGEGASTHTVKFRLVVFRPFVGEIIAAKLKESDANGLRLSLGFFEDIYVPSHLLPS 116
+ GE + TVK++ + +P GE+I A + E++ G+ S+G +++ +H +P+
Sbjct: 57 RIILTGE--TIFTVKYKALTLKPLKGEVIDANVVETNKMGVFASVGPLT-VFISNHQIPN 113
>gi|340506479|gb|EGR32604.1| hypothetical protein IMG5_076340 [Ichthyophthirius multifiliis]
Length = 113
Score = 38.1 bits (87), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 38/74 (51%), Gaps = 10/74 (13%)
Query: 122 PDPYGRYEVKWIWEF---GDTKYVIDGLDEIKFRVLSVNYPSIPIEQAEGSKPFAPMVIN 178
P Y + + KWIW+ G + DG D ++F++++VN + +Q + + I
Sbjct: 44 PSGYTQEQNKWIWQNLNDGSCLFYEDGQD-VQFKIMAVNMMHLKEDQEQTHQ------II 96
Query: 179 GSIDYDGLGPVSWW 192
G ++ GLGP WW
Sbjct: 97 GCMNEQGLGPNLWW 110
>gi|384247619|gb|EIE21105.1| RNA polymerase II subunit B7 [Coccomyxa subellipsoidea C-169]
Length = 176
Score = 38.1 bits (87), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 27/103 (26%), Positives = 46/103 (44%), Gaps = 15/103 (14%)
Query: 18 LRLPLNEAIKLELENVFLDKVIANLGLCISIYDIKEIEGGFVYPGEGASTHTVKFRLVVF 77
LR L + + E+E K G I + + + G + G G + V++ VV
Sbjct: 22 LREVLEQKLISEVEGTCSGK----YGFIICVTGMGHVGKGSIREGSGTALFKVQYSCVVL 77
Query: 78 RPFVGEIIAAKLKESDANGLRLSLGFFED-----IYVPSHLLP 115
RPF GE++ + + +GFF D ++V +HL+P
Sbjct: 78 RPFKGEVLDCVVSSVN------KVGFFADAGPLQLFVSNHLIP 114
>gi|351724841|ref|NP_001238607.1| uncharacterized protein LOC100527862 [Glycine max]
gi|255633396|gb|ACU17055.1| unknown [Glycine max]
Length = 180
Score = 38.1 bits (87), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 40/172 (23%), Positives = 80/172 (46%), Gaps = 19/172 (11%)
Query: 20 LPLNEAIKLELENVF-LDKVIANLGLCISIYDIKEIEGGFVYPGEGASTHTVKFRLVVFR 78
L L+ AI + L + F + K +LG +++ +++I G V G V F ++ F+
Sbjct: 23 LMLHRAIIVRLLSDFAVKKATKDLGYFLAVTTLEKIGEGKVRQHTGDVLFPVVFNVITFK 82
Query: 79 PFVGEIIAAKLKESDANGLRLSLGFFEDIYVPSHLLPSPSRSEPDPYGRYEVKWIWEFGD 138
F GEI+ + + +G+ + G E++Y+ + +P R P +
Sbjct: 83 FFKGEILEGVVHKVLKHGVFMRCGPIENVYLSNLKMPD-YRYVPGE-------------N 128
Query: 139 TKYVIDGLDEIKFRVLSVNYPSIPIEQAEGSKPFAPMVINGSIDYDGLGPVS 190
++ D + +I + ++V + I + E + F +V S++ D LGP+S
Sbjct: 129 ACFMNDKMSKIG-KDVTVRFSVIGTKWMEAEREFQALV---SLEGDYLGPIS 176
>gi|167517525|ref|XP_001743103.1| hypothetical protein [Monosiga brevicollis MX1]
gi|163778202|gb|EDQ91817.1| predicted protein [Monosiga brevicollis MX1]
Length = 174
Score = 38.1 bits (87), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 27/122 (22%), Positives = 51/122 (41%), Gaps = 4/122 (3%)
Query: 1 MFYLSKIEHTLRLPPHLLRLPLNEAIKLELENVFLDKVIANLGLCISIYDIKEIEGGFVY 60
MF+ + H + L P L L +K +L + KV + G +++ I I G +
Sbjct: 1 MFFTETLTHDVLLHPRFLDQNLEAILKTQLYSEVECKVHRSHGYVLAVIKIDRISEGRIL 60
Query: 61 PGEGASTHTVKFRLVVFRPFVGEIIAAKLKESDANGLRLSLG----FFEDIYVPSHLLPS 116
G V + V+ RP ++I + + G+ +S+G F + ++P S
Sbjct: 61 FNRGEILFNVTYTAVILRPVPKQVIDTMVTSVNNRGIFVSIGPLTAFVSNSWIPDMTFDS 120
Query: 117 PS 118
+
Sbjct: 121 DA 122
>gi|429961557|gb|ELA41102.1| hypothetical protein VICG_01895 [Vittaforma corneae ATCC 50505]
Length = 154
Score = 37.7 bits (86), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 35/124 (28%), Positives = 58/124 (46%), Gaps = 9/124 (7%)
Query: 1 MFYLSKIEHTLRLPPHLLRLPLNEAIKLELENVFLDKV---IANLGLCISIYDIKEIEGG 57
MFY+ + H L L P L + I+ ++ L KV + G IS+ I I G
Sbjct: 1 MFYVKRFVHRLSLHPQYL----GQNIQSLIQEYLLKKVEGTCTSSGYIISVLGIDGISEG 56
Query: 58 FVYPGEGASTHTVKFRLVVFRPFVGEIIAAKLKESDANGLRLSLGFFEDIYVPSHLLPSP 117
V G + V+++ VV +P GEI+ A + S G S+G I++ ++ +P+
Sbjct: 57 KVLL-TGHISFDVEYQAVVLKPTSGEIVDAPIVSSTKMGYFASVGPLS-IFISNYQIPNT 114
Query: 118 SRSE 121
+ E
Sbjct: 115 TLEE 118
>gi|429328615|gb|AFZ80375.1| DNA-directed RNA polymerase II subunit Rpb7, putative [Babesia
equi]
Length = 175
Score = 37.7 bits (86), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 43/180 (23%), Positives = 71/180 (39%), Gaps = 18/180 (10%)
Query: 1 MFYLSKIEHTLRLPPHLLRLPLNEAIKLELENVFLDKVIANLGLCISIYDIKEIEGGFVY 60
M+++ + + + P L + I+ L + A G + + I E G V
Sbjct: 1 MYFVVEQWKLINVKPSQLGPNYQQNIEEMLRDQVEGHCTAKYGYVVCVIRIVHNEIGRVQ 60
Query: 61 PGEGASTHTVKFRLVVFRPFVGEIIAAKLKESDANGLRLSLGFFEDIYVPSHLLPSPSRS 120
G VK++ +VF+PF E++ A + +D N LGFF L SR+
Sbjct: 61 DGTAMIVVNVKYQAIVFKPFKDEVLDAIV--TDVN----KLGFFAQ---AGPLKVFVSRT 111
Query: 121 EPDPYGRYEVKWIW-EFGDTKYVIDGLDEIKFRVLSVNYPSIPIEQAEGSKPFAPMVING 179
DP Y+ + + D I E++ R+ ++Y E S FA IN
Sbjct: 112 SIDPNFVYDNDAAYPCYSDGTISIKPQSEVRMRIQGISY--------ENSNIFAVATINA 163
>gi|56118982|ref|NP_001007947.1| sphingosine-1-phosphate lyase 1 [Gallus gallus]
gi|53127304|emb|CAG31035.1| hypothetical protein RCJMB04_1l22 [Gallus gallus]
Length = 561
Score = 37.7 bits (86), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 37/69 (53%), Gaps = 3/69 (4%)
Query: 57 GFVYPGEGASTHTVK--FRLVVFRPFVGEIIAAKLKESDANGLRLSLGFFEDIYVPSHLL 114
GF++ E ++ T K FRL+ PFVG II K+ E+ N + SL F +D +L
Sbjct: 50 GFLFQSESLTSRTKKQFFRLLRKMPFVGAIIQKKIDEA-LNDVTSSLSFLKDEKDYIKVL 108
Query: 115 PSPSRSEPD 123
P S+P+
Sbjct: 109 PEQGMSQPE 117
>gi|48477938|ref|YP_023644.1| DNA-directed RNA polymerase subunit E' [Picrophilus torridus DSM
9790]
gi|48430586|gb|AAT43451.1| DNA-directed RNA polymerase subunit E' [Picrophilus torridus DSM
9790]
Length = 195
Score = 37.7 bits (86), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 41/173 (23%), Positives = 74/173 (42%), Gaps = 24/173 (13%)
Query: 8 EHTLRLPPHLLRLPLNEAIKLELENVFL--------DKVIANLGLC--ISIYDIKEIEGG 57
++ R+PP LL EA+ LE+ L D N+G C +SI +I+ + G
Sbjct: 8 DYVARVPPELLGDDYREAV-LEITKRNLVGKLVDINDSTGRNMGKCFIVSIENIELVGDG 66
Query: 58 FVYPGEGASTHTVKFRLVVFRPFVGEIIAAKLKESDANGLRLSLGFFEDIYVPSHLLP-- 115
+ G+G V + + + P + E++ + G + G FE + S ++
Sbjct: 67 TIVHGDGGVYQDVVYTAIAYYPKMHEVVDGVVISIQKFGAFVKFGPFEGLLHISQIMDDI 126
Query: 116 -SPSRSEPDPYGRYEVKWIWEFGDTKYVIDGLDEIKFRVLSVNYPSIPIEQAE 167
+ + GR DTK + D+I+ R++++N S IE A+
Sbjct: 127 INIDMANQRFVGR----------DTKEDLKIGDKIRVRIVAMNLSSSSIEDAK 169
>gi|269986774|gb|EEZ93053.1| RNA polymerase Rpb7 domain protein [Candidatus Parvarchaeum
acidiphilum ARMAN-4]
Length = 177
Score = 37.7 bits (86), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 26/139 (18%), Positives = 58/139 (41%)
Query: 1 MFYLSKIEHTLRLPPHLLRLPLNEAIKLELENVFLDKVIANLGLCISIYDIKEIEGGFVY 60
M+ + + +R+ P+ L+ EA + ++ K+I L + + I IE G +
Sbjct: 1 MYEIITLRDKIRVEPNKLQEDRKEAATEIIRQNYIGKIIEEKALLVGLIGIDSIEEGIII 60
Query: 61 PGEGASTHTVKFRLVVFRPFVGEIIAAKLKESDANGLRLSLGFFEDIYVPSHLLPSPSRS 120
P + + + FR++ + P + E + ++ E G +++G + + S +
Sbjct: 61 PNDASIYYDTIFRMLAYLPTLHETVKGQVTEVSEIGAIVNIGPLDGLAHISQTMDDFVDF 120
Query: 121 EPDPYGRYEVKWIWEFGDT 139
+ K + GDT
Sbjct: 121 SKNALTGRRTKTTIKTGDT 139
>gi|326923469|ref|XP_003207958.1| PREDICTED: sphingosine-1-phosphate lyase 1-like [Meleagris
gallopavo]
Length = 781
Score = 36.6 bits (83), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 42/84 (50%), Gaps = 3/84 (3%)
Query: 42 LGLCISIYDIKEIEGGFVYPGEGASTHTVK--FRLVVFRPFVGEIIAAKLKESDANGLRL 99
+GL IS + GF++ E ++ T K FRL+ PFVG II K+ E+ N +
Sbjct: 175 VGLTISSTLLTVWLHGFLFQSESLTSRTKKQFFRLLRKMPFVGAIIQKKIDEA-LNDVTS 233
Query: 100 SLGFFEDIYVPSHLLPSPSRSEPD 123
SL F +D +LP +P+
Sbjct: 234 SLSFLKDEKNYIKVLPEQGMDQPE 257
>gi|393795574|ref|ZP_10378938.1| DNA-directed RNA polymerase subunit E' [Candidatus
Nitrosoarchaeum limnia BG20]
Length = 180
Score = 36.6 bits (83), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 35/69 (50%), Gaps = 4/69 (5%)
Query: 25 AIKLELENVFLDK----VIANLGLCISIYDIKEIEGGFVYPGEGASTHTVKFRLVVFRPF 80
A+K N+ DK + A LG I I D K E G + G+G + H V+F + F P
Sbjct: 5 ALKKAATNILKDKYESMINAELGYIIMILDAKVDEMGKMIAGDGGTFHKVEFEALTFYPK 64
Query: 81 VGEIIAAKL 89
+ EI+ ++
Sbjct: 65 LQEIVQGEI 73
>gi|357134424|ref|XP_003568817.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB7-like isoform
1 [Brachypodium distachyon]
gi|357134426|ref|XP_003568818.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB7-like isoform
2 [Brachypodium distachyon]
Length = 175
Score = 35.8 bits (81), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 31/127 (24%), Positives = 52/127 (40%), Gaps = 15/127 (11%)
Query: 30 LENVFLDKVIANLGLCISIYDIKEIEGGFVYPGEGASTHTVKFRLVVFRPFVGEIIAAKL 89
LE+V K G I++ ++KEI G V G V F + +P GEI+ +
Sbjct: 35 LEDVTNRKASKEHGYYIAVNELKEISEGKVRELTGDVLFPVTFTCITLKPMKGEILVGSV 94
Query: 90 KESDANGLRLSLGFFEDIYVPSH--------------LLPSPSRSEPDPYGRYEVK-WIW 134
+ +G+ L G E+I++ + S+ E D R+ V + W
Sbjct: 95 DKILKHGMFLKSGPIENIFLSEKTMNDYKYIGGENPMFMKDHSKLEKDTIVRFRVMGFRW 154
Query: 135 EFGDTKY 141
GD ++
Sbjct: 155 MEGDRQF 161
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.321 0.144 0.444
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,380,800,504
Number of Sequences: 23463169
Number of extensions: 147763278
Number of successful extensions: 331066
Number of sequences better than 100.0: 852
Number of HSP's better than 100.0 without gapping: 761
Number of HSP's successfully gapped in prelim test: 91
Number of HSP's that attempted gapping in prelim test: 329653
Number of HSP's gapped (non-prelim): 919
length of query: 192
length of database: 8,064,228,071
effective HSP length: 134
effective length of query: 58
effective length of database: 9,215,130,721
effective search space: 534477581818
effective search space used: 534477581818
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 72 (32.3 bits)