Your job contains 1 sequence.
>029496
MIFNGAVAAAAARSSSIESGTKLYISNLEYGVSNEDIKELFSEVGELKRCSVHFDRSGRS
KGTAEVVLTRRADAIAAVKRYNNVQLDGKPMKIEIIGTNIGPPAAVLPITNVMYGNEIGM
TRSRLRMGGAIPIERPRRGRGGLGGRGGRGGARGGRGRGRGQGAKPNLSVEDLDADLEKY
HIEAKQSDGMVH
The BLAST search returned 4 gene products which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 029496
(192 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2181763 - symbol:AT5G02530 species:3702 "Arabi... 387 9.5e-42 2
TAIR|locus:2205293 - symbol:AT1G66260 species:3702 "Arabi... 296 1.3e-30 2
TAIR|locus:2151779 - symbol:ALY4 "ALWAYS EARLY 4" species... 292 6.8e-30 2
UNIPROTKB|E1C2L5 - symbol:THOC4 "Uncharacterized protein"... 272 4.5e-27 2
UNIPROTKB|E9PB61 - symbol:ALYREF "THO complex subunit 4" ... 271 5.8e-27 2
UNIPROTKB|Q86V81 - symbol:ALYREF "THO complex subunit 4" ... 271 5.8e-27 2
UNIPROTKB|Q3T0I4 - symbol:ALYREF "THO complex subunit 4" ... 269 9.4e-27 2
UNIPROTKB|F1PL92 - symbol:ALYREF "Uncharacterized protein... 269 9.4e-27 2
MGI|MGI:1341044 - symbol:Alyref "Aly/REF export factor" s... 268 1.2e-26 2
ZFIN|ZDB-GENE-070928-29 - symbol:alyref "Aly/REF export f... 268 1.2e-26 2
MGI|MGI:1913144 - symbol:Alyref2 "Aly/REF export factor 2... 272 1.5e-26 2
FB|FBgn0010774 - symbol:Ref1 "RNA and export factor bindi... 255 3.0e-24 2
RGD|1594679 - symbol:Thoc4 "THO complex 4" species:10116 ... 225 1.1e-18 1
DICTYBASE|DDB_G0285361 - symbol:DDB_G0285361 "RNA-binding... 211 3.9e-17 1
ASPGD|ASPL0000065384 - symbol:AN7706 species:162425 "Emer... 171 1.4e-14 2
POMBASE|SPBC1D7.04 - symbol:mlo3 "RNA binding protein Mlo... 146 4.2e-13 2
FB|FBgn0032439 - symbol:Ref2 "RNA and export factor bindi... 161 6.4e-12 1
WB|WBGene00000122 - symbol:aly-3 species:6239 "Caenorhabd... 130 1.6e-11 2
WB|WBGene00000120 - symbol:aly-1 species:6239 "Caenorhabd... 124 3.0e-11 2
UNIPROTKB|Q5F4B6 - symbol:POLDIP3 "Uncharacterized protei... 152 3.6e-10 1
MGI|MGI:1921076 - symbol:Poldip3 "polymerase (DNA-directe... 151 4.7e-10 1
RGD|1311073 - symbol:Poldip3 "polymerase (DNA-directed), ... 151 4.7e-10 1
UNIPROTKB|A7YW33 - symbol:POLDIP3 "Polymerase (DNA-direct... 151 4.8e-10 1
UNIPROTKB|F1PS15 - symbol:POLDIP3 "Uncharacterized protei... 151 4.8e-10 1
UNIPROTKB|Q9BY77 - symbol:POLDIP3 "Polymerase delta-inter... 151 4.8e-10 1
UNIPROTKB|E2RT45 - symbol:POLDIP3 "Uncharacterized protei... 151 5.2e-10 1
WB|WBGene00000121 - symbol:aly-2 species:6239 "Caenorhabd... 117 8.3e-10 2
GENEDB_PFALCIPARUM|PFF0760w - symbol:PFF0760w "RNA and ex... 136 2.9e-09 1
TAIR|locus:2049721 - symbol:AT2G37220 species:3702 "Arabi... 140 3.2e-09 1
UNIPROTKB|B4DMM2 - symbol:POLDIP3 "Polymerase delta-inter... 132 7.6e-09 1
UNIPROTKB|F1NIP6 - symbol:MYEF2 "Uncharacterized protein"... 127 1.4e-08 2
UNIPROTKB|Q5ZHY2 - symbol:MYEF2 "Uncharacterized protein"... 127 2.0e-08 2
UNIPROTKB|Q83CD7 - symbol:CBU_1183 "Glycine-rich RNA-bind... 128 2.0e-08 1
TIGR_CMR|CBU_1183 - symbol:CBU_1183 "nucleic acid binding... 128 2.0e-08 1
UNIPROTKB|F1SJQ4 - symbol:POLDIP3 "Uncharacterized protei... 133 2.8e-08 1
TAIR|locus:2077427 - symbol:AT3G08000 species:3702 "Arabi... 126 3.3e-08 1
ASPGD|ASPL0000011897 - symbol:AN3739 species:162425 "Emer... 134 4.2e-08 1
TAIR|locus:2075860 - symbol:U11/U12-31K "U11/U12-31K" spe... 127 6.8e-08 1
WB|WBGene00001368 - symbol:exc-7 species:6239 "Caenorhabd... 131 8.1e-08 1
UNIPROTKB|Q60A61 - symbol:MCA1010 "RNA-binding protein" s... 122 8.7e-08 1
UNIPROTKB|H0YN19 - symbol:MYEF2 "Myelin expression factor... 127 9.0e-08 1
TAIR|locus:2058573 - symbol:PAB4 "AT2G23350" species:3702... 132 1.1e-07 1
UNIPROTKB|G4MKS1 - symbol:MGG_06668 "Uncharacterized prot... 124 1.4e-07 1
UNIPROTKB|F1LSJ5 - symbol:Hnrpm "Protein Hnrpm" species:1... 122 2.0e-07 1
UNIPROTKB|F1PIN4 - symbol:MYEF2 "Uncharacterized protein"... 127 2.0e-07 1
POMBASE|SPAC328.05 - symbol:SPAC328.05 "RNA-binding prote... 127 2.2e-07 1
UNIPROTKB|F1PIL7 - symbol:MYEF2 "Uncharacterized protein"... 127 2.5e-07 1
UNIPROTKB|F1SN63 - symbol:MYEF2 "Uncharacterized protein"... 127 2.8e-07 1
UNIPROTKB|A6QQP0 - symbol:MYEF2 "MYEF2 protein" species:9... 127 2.9e-07 1
UNIPROTKB|D4AB08 - symbol:Myef2 "Protein Myef2" species:1... 127 3.0e-07 1
UNIPROTKB|D4A1T2 - symbol:Myef2 "Protein Myef2" species:1... 127 3.1e-07 1
RGD|1306547 - symbol:Myef2 "myelin expression factor 2" s... 127 3.2e-07 1
UNIPROTKB|Q9P2K5 - symbol:MYEF2 "Myelin expression factor... 127 3.3e-07 1
UNIPROTKB|F1PIK6 - symbol:MYEF2 "Uncharacterized protein"... 127 3.4e-07 1
SGD|S000000517 - symbol:GBP2 "Poly(A+) RNA-binding protei... 124 4.1e-07 1
UNIPROTKB|Q7ZYE9 - symbol:hnrnpab "Hnrpab-prov protein" s... 121 5.3e-07 1
UNIPROTKB|B4DQI6 - symbol:TRA2A "cDNA FLJ50614, highly si... 114 6.1e-07 1
UNIPROTKB|B4DUA9 - symbol:TRA2A "Transformer-2 protein ho... 114 6.1e-07 1
WB|WBGene00011156 - symbol:R09B3.3 species:6239 "Caenorha... 114 6.1e-07 1
UNIPROTKB|O45713 - symbol:R09B3.3 "Protein R09B3.3" speci... 114 6.1e-07 1
UNIPROTKB|F1NS10 - symbol:HNRNPM "Uncharacterized protein... 123 8.0e-07 1
TAIR|locus:2009036 - symbol:PAB1 "poly(A) binding protein... 121 8.1e-07 1
UNIPROTKB|J9NZ20 - symbol:ZCRB1 "Uncharacterized protein"... 115 8.8e-07 1
MGI|MGI:1914447 - symbol:Zcrb1 "zinc finger CCHC-type and... 115 8.8e-07 1
RGD|1309851 - symbol:Zcrb1 "zinc finger CCHC-type and RNA... 115 8.8e-07 1
UNIPROTKB|F1MYI2 - symbol:HNRNPM "Uncharacterized protein... 122 1.0e-06 1
UNIPROTKB|Q5ZL80 - symbol:HNRNPM "Uncharacterized protein... 123 1.1e-06 1
ZFIN|ZDB-GENE-051120-114 - symbol:myef2 "myelin expressio... 121 1.3e-06 1
RGD|620369 - symbol:Hnrnpm "heterogeneous nuclear ribonuc... 122 1.4e-06 1
UNIPROTKB|F1LV13 - symbol:Hnrpm "Protein Hnrpm" species:1... 122 1.4e-06 1
UNIPROTKB|Q62826 - symbol:Hnrnpm "Heterogeneous nuclear r... 122 1.4e-06 1
UNIPROTKB|F1SA50 - symbol:HNRNPM "Uncharacterized protein... 122 1.4e-06 1
UNIPROTKB|F1MY44 - symbol:HNRNPM "Uncharacterized protein... 122 1.5e-06 1
UNIPROTKB|P52272 - symbol:HNRNPM "Heterogeneous nuclear r... 122 1.5e-06 1
UNIPROTKB|E2RMR3 - symbol:HNRNPM "Uncharacterized protein... 122 1.5e-06 1
UNIPROTKB|F5H606 - symbol:RBM7 "RNA-binding protein 7" sp... 109 2.1e-06 1
UNIPROTKB|E2R4B2 - symbol:TRA2A "Uncharacterized protein"... 114 2.3e-06 1
UNIPROTKB|Q06AA6 - symbol:TRA2A "Uncharacterized protein"... 114 2.3e-06 1
UNIPROTKB|Q2KJ71 - symbol:TRA2A "Transformer 2 alpha homo... 114 2.3e-06 1
MGI|MGI:1933972 - symbol:Tra2a "transformer 2 alpha homol... 114 2.3e-06 1
UNIPROTKB|Q13595 - symbol:TRA2A "Transformer-2 protein ho... 114 2.3e-06 1
RGD|1562563 - symbol:Tra2a "transformer 2 alpha homolog (... 114 2.3e-06 1
MGI|MGI:1926465 - symbol:Hnrnpm "heterogeneous nuclear ri... 120 2.4e-06 1
WB|WBGene00011059 - symbol:R06C1.4 species:6239 "Caenorha... 108 2.6e-06 1
FB|FBgn0030956 - symbol:CG18259 species:7227 "Drosophila ... 117 2.8e-06 1
FB|FBgn0030959 - symbol:CG6961 species:7227 "Drosophila m... 117 2.8e-06 1
WB|WBGene00001340 - symbol:etr-1 species:6239 "Caenorhabd... 118 3.0e-06 1
FB|FBgn0037602 - symbol:CG8021 species:7227 "Drosophila m... 107 3.4e-06 1
WB|WBGene00011155 - symbol:R09B3.2 species:6239 "Caenorha... 106 4.3e-06 1
ASPGD|ASPL0000076347 - symbol:AN4505 species:162425 "Emer... 109 5.0e-06 1
UNIPROTKB|F1SV06 - symbol:PABPC4 "Uncharacterized protein... 116 5.3e-06 1
UNIPROTKB|H0YCC8 - symbol:PABPC4 "Polyadenylate-binding p... 112 5.4e-06 1
WB|WBGene00003903 - symbol:pab-2 species:6239 "Caenorhabd... 116 6.0e-06 1
ASPGD|ASPL0000073559 - symbol:AN10574 species:162425 "Eme... 119 6.1e-06 1
UNIPROTKB|E2R9I0 - symbol:PABPC4 "Uncharacterized protein... 115 6.8e-06 1
TAIR|locus:2076096 - symbol:GRP4 "glycine-rich RNA-bindin... 104 7.0e-06 1
UNIPROTKB|A4IFC3 - symbol:PABPC4 "Uncharacterized protein... 115 7.0e-06 1
WB|WBGene00004705 - symbol:rsp-8 species:6239 "Caenorhabd... 113 7.3e-06 1
ZFIN|ZDB-GENE-040426-2516 - symbol:zgc:77052 "zgc:77052" ... 113 7.3e-06 1
UNIPROTKB|E2R9I1 - symbol:PABPC4 "Uncharacterized protein... 115 7.8e-06 1
WARNING: Descriptions of 154 database sequences were not reported due to the
limiting value of parameter V = 100.
>TAIR|locus:2181763 [details] [associations]
symbol:AT5G02530 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA;ISS] [GO:0005575 "cellular_component"
evidence=ND] [GO:0008150 "biological_process" evidence=ND]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR025715 Pfam:PF13865
KO:K12881 HSSP:O08583 eggNOG:NOG316507 HOGENOM:HOG000239962
OMA:IRNRPAI UniGene:At.27625 UniGene:At.72858 EMBL:AY140010
EMBL:BT006323 IPI:IPI00538790 RefSeq:NP_195873.2
ProteinModelPortal:Q8L719 SMR:Q8L719 IntAct:Q8L719 STRING:Q8L719
PaxDb:Q8L719 PRIDE:Q8L719 EnsemblPlants:AT5G02530.1 GeneID:831923
KEGG:ath:AT5G02530 TAIR:At5g02530 InParanoid:Q8L719
PhylomeDB:Q8L719 ProtClustDB:CLSN2918011 ArrayExpress:Q8L719
Genevestigator:Q8L719 Uniprot:Q8L719
Length = 292
Score = 387 (141.3 bits), Expect = 9.5e-42, Sum P(2) = 9.5e-42
Identities = 77/95 (81%), Positives = 86/95 (90%)
Query: 15 SSIESGTKLYISNLEYGVSNEDIKELFSEVGELKRCSVHFDRSGRSKGTAEVVLTRRADA 74
SSIE+GTKLYISNL+YGVSNEDIKELFSEVG+LKR +H+DRSGRSKGTAEVV +RR DA
Sbjct: 102 SSIETGTKLYISNLDYGVSNEDIKELFSEVGDLKRYGIHYDRSGRSKGTAEVVFSRRGDA 161
Query: 75 IAAVKRYNNVQLDGKPMKIEIIGTNIGPPAAVLPI 109
+AAVKRYNNVQLDGK MKIEI+GTN+ PA LPI
Sbjct: 162 LAAVKRYNNVQLDGKLMKIEIVGTNLSAPA--LPI 194
Score = 72 (30.4 bits), Expect = 9.5e-42, Sum P(2) = 9.5e-42
Identities = 13/21 (61%), Positives = 18/21 (85%)
Query: 167 NLSVEDLDADLEKYHIEAKQS 187
N+S EDLDA+L+KYH EA ++
Sbjct: 271 NVSAEDLDAELDKYHKEAMET 291
>TAIR|locus:2205293 [details] [associations]
symbol:AT1G66260 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA;ISS] [GO:0005634 "nucleus" evidence=ISM]
[GO:0008150 "biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 KO:K12881 HSSP:O08583
HOGENOM:HOG000239962 ProtClustDB:CLSN2689042 EMBL:AF410310
EMBL:AY149925 IPI:IPI00520633 RefSeq:NP_001185329.1
RefSeq:NP_564871.1 UniGene:At.25606 ProteinModelPortal:Q94EH8
SMR:Q94EH8 STRING:Q94EH8 PaxDb:Q94EH8 PRIDE:Q94EH8
EnsemblPlants:AT1G66260.1 EnsemblPlants:AT1G66260.2 GeneID:842943
KEGG:ath:AT1G66260 TAIR:At1g66260 eggNOG:NOG257473
InParanoid:Q94EH8 OMA:HAEAMNI PhylomeDB:Q94EH8
Genevestigator:Q94EH8 Uniprot:Q94EH8
Length = 295
Score = 296 (109.3 bits), Expect = 1.3e-30, Sum P(2) = 1.3e-30
Identities = 55/100 (55%), Positives = 80/100 (80%)
Query: 15 SSIESGTKLYISNLEYGVSNEDIKELFSEVGELKRCSVHFDRSGRSKGTAEVVLTRRADA 74
S +E GT +YI+NL+ GV+NEDI+EL++E+GELKR ++H+D++GR G+AEVV RR+DA
Sbjct: 101 SGVEVGTTVYITNLDQGVTNEDIRELYAEIGELKRYAIHYDKNGRPSGSAEVVYMRRSDA 160
Query: 75 IAAVKRYNNVQLDGKPMKIEIIGTNI--GPPAAVLPITNV 112
I A+++YNNV LDG+PMK+EI+G N P AA + +T +
Sbjct: 161 IQAMRKYNNVLLDGRPMKLEILGGNTESAPVAARVNVTGL 200
Score = 57 (25.1 bits), Expect = 1.3e-30, Sum P(2) = 1.3e-30
Identities = 13/21 (61%), Positives = 13/21 (61%)
Query: 165 KP-NLSVEDLDADLEKYHIEA 184
KP S DLD DLE YH EA
Sbjct: 271 KPVEKSAADLDKDLESYHAEA 291
>TAIR|locus:2151779 [details] [associations]
symbol:ALY4 "ALWAYS EARLY 4" species:3702 "Arabidopsis
thaliana" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA;ISS] [GO:0008150
"biological_process" evidence=ND] [GO:0005730 "nucleolus"
evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 PROSITE:PS50102
SMART:SM00360 EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0005730
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR025715
Pfam:PF13865 KO:K12881 HOGENOM:HOG000239962 EMBL:BT010588
EMBL:AK227931 IPI:IPI00538146 RefSeq:NP_198588.2 UniGene:At.22374
ProteinModelPortal:Q6NQ72 SMR:Q6NQ72 STRING:Q6NQ72 PRIDE:Q6NQ72
EnsemblPlants:AT5G37720.1 GeneID:833750 KEGG:ath:AT5G37720
TAIR:At5g37720 InParanoid:Q6NQ72 OMA:EVERYAI PhylomeDB:Q6NQ72
ProtClustDB:CLSN2689042 Genevestigator:Q6NQ72 Uniprot:Q6NQ72
Length = 288
Score = 292 (107.8 bits), Expect = 6.8e-30, Sum P(2) = 6.8e-30
Identities = 53/99 (53%), Positives = 78/99 (78%)
Query: 14 SSSIESGTKLYISNLEYGVSNEDIKELFSEVGELKRCSVHFDRSGRSKGTAEVVLTRRAD 73
+S +E GT+L+++NL+ GV+NEDI+ELFSE+GE++R ++H+D++GR GTAEVV RR+D
Sbjct: 86 ASGVEVGTRLHVTNLDQGVTNEDIRELFSEIGEVERYAIHYDKNGRPSGTAEVVYPRRSD 145
Query: 74 AIAAVKRYNNVQLDGKPMKIEIIGTNIGPPAAVLPITNV 112
A A+K+YNNV LDG+PM++EI+G N A + NV
Sbjct: 146 AFQALKKYNNVLLDGRPMRLEILGGNNSSEAPLSGRVNV 184
Score = 54 (24.1 bits), Expect = 6.8e-30, Sum P(2) = 6.8e-30
Identities = 12/21 (57%), Positives = 13/21 (61%)
Query: 165 KP-NLSVEDLDADLEKYHIEA 184
KP S DLD DLE YH +A
Sbjct: 264 KPVEKSAADLDKDLESYHADA 284
>UNIPROTKB|E1C2L5 [details] [associations]
symbol:THOC4 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0000346
"transcription export complex" evidence=IEA] [GO:0003697
"single-stranded DNA binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0046784 "intronless viral mRNA export
from host nucleus" evidence=IEA] [GO:0071013 "catalytic step 2
spliceosome" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0006406 GO:GO:0071013
InterPro:IPR025715 Pfam:PF13865 GO:GO:0000346
GeneTree:ENSGT00410000025615 OMA:IRNRPAI EMBL:AADN02053597
IPI:IPI00576073 ProteinModelPortal:E1C2L5
Ensembl:ENSGALT00000011710 Uniprot:E1C2L5
Length = 258
Score = 272 (100.8 bits), Expect = 4.5e-27, Sum P(2) = 4.5e-27
Identities = 56/115 (48%), Positives = 79/115 (68%)
Query: 15 SSIESGTKLYISNLEYGVSNEDIKELFSEVGELKRCSVHFDRSGRSKGTAEVVLTRRADA 74
+ +E+G KL +SNL++GVS+ DI+ELF+E G LK+ +VH+DRSGRS GTA+V R+ADA
Sbjct: 98 AGVETGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDRSGRSLGTADVHFERKADA 157
Query: 75 IAAVKRYNNVQLDGKPMKIEIIGTNIGPPAAVLPITNVMYGNEIGMTRSRLRMGG 129
+ A+K+YN V LDG+PM I+++ + I P N GMTR+R GG
Sbjct: 158 LKAMKQYNGVPLDGRPMNIQLVTSQIDTQRR--PAQRNHSVNRGGMTRNRGGSGG 210
Score = 47 (21.6 bits), Expect = 4.5e-27, Sum P(2) = 4.5e-27
Identities = 9/18 (50%), Positives = 13/18 (72%)
Query: 164 AKPNLSVEDLDADLEKYH 181
+K LS E+LDA L+ Y+
Sbjct: 235 SKQQLSAEELDAQLDAYN 252
>UNIPROTKB|E9PB61 [details] [associations]
symbol:ALYREF "THO complex subunit 4" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003697
"single-stranded DNA binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005730 "nucleolus" evidence=IDA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AC145207 InterPro:IPR025715 Pfam:PF13865 KO:K12881 CTD:10189
OMA:IRNRPAI RefSeq:NP_005773.3 UniGene:Hs.534385 DNASU:10189
GeneID:10189 KEGG:hsa:10189 HGNC:HGNC:19071 GenomeRNAi:10189
NextBio:38562 IPI:IPI00328840 ProteinModelPortal:E9PB61 SMR:E9PB61
IntAct:E9PB61 PRIDE:E9PB61 Ensembl:ENST00000505490 UCSC:uc002kbu.2
ArrayExpress:E9PB61 Bgee:E9PB61 Uniprot:E9PB61
Length = 264
Score = 271 (100.5 bits), Expect = 5.8e-27, Sum P(2) = 5.8e-27
Identities = 56/110 (50%), Positives = 80/110 (72%)
Query: 15 SSIESGTKLYISNLEYGVSNEDIKELFSEVGELKRCSVHFDRSGRSKGTAEVVLTRRADA 74
+ +E+G KL +SNL++GVS+ DI+ELF+E G LK+ +VH+DRSGRS GTA+V R+ADA
Sbjct: 107 AGVETGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDRSGRSLGTADVHFERKADA 166
Query: 75 IAAVKRYNNVQLDGKPMKIEIIGTNIGPPAAVLPITNVMYGNEIGMTRSR 124
+ A+K+YN V LDG+PM I+++ + I A P +V G GMTR+R
Sbjct: 167 LKAMKQYNGVPLDGRPMNIQLVTSQID--AQRRPAQSVNRG---GMTRNR 211
Score = 47 (21.6 bits), Expect = 5.8e-27, Sum P(2) = 5.8e-27
Identities = 9/18 (50%), Positives = 13/18 (72%)
Query: 164 AKPNLSVEDLDADLEKYH 181
+K LS E+LDA L+ Y+
Sbjct: 241 SKQQLSAEELDAQLDAYN 258
>UNIPROTKB|Q86V81 [details] [associations]
symbol:ALYREF "THO complex subunit 4" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0016607 "nuclear speck"
evidence=IEA] [GO:0006406 "mRNA export from nucleus"
evidence=IMP;TAS] [GO:0005515 "protein binding" evidence=IPI]
[GO:0000346 "transcription export complex" evidence=IDA]
[GO:0046784 "intronless viral mRNA export from host nucleus"
evidence=IDA] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=IC;TAS] [GO:0071013 "catalytic step 2 spliceosome"
evidence=IDA] [GO:0005654 "nucleoplasm" evidence=TAS] [GO:0005829
"cytosol" evidence=TAS] [GO:0006366 "transcription from RNA
polymerase II promoter" evidence=TAS] [GO:0006369 "termination of
RNA polymerase II transcription" evidence=TAS] [GO:0008380 "RNA
splicing" evidence=TAS] [GO:0010467 "gene expression" evidence=TAS]
[GO:0031124 "mRNA 3'-end processing" evidence=TAS] [GO:0005634
"nucleus" evidence=IDA] [GO:0005730 "nucleolus" evidence=IDA]
Reactome:REACT_71 InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005829
GO:GO:0005654 GO:GO:0000166 GO:GO:0016607 Reactome:REACT_1675
Gene3D:3.30.70.330 GO:GO:0003723 EMBL:AC145207 GO:GO:0000398
GO:GO:0071013 Reactome:REACT_1788 GO:GO:0006369 InterPro:IPR025715
Pfam:PF13865 GO:GO:0031124 Reactome:REACT_78 GO:GO:0000346
GO:GO:0046784 KO:K12881 eggNOG:NOG316507 HOGENOM:HOG000239962
HOVERGEN:HBG054806 CTD:10189 EMBL:BC052302 EMBL:AF047002
IPI:IPI01010794 RefSeq:NP_005773.3 UniGene:Hs.534385 PDB:3ULH
PDBsum:3ULH ProteinModelPortal:Q86V81 SMR:Q86V81 DIP:DIP-32711N
IntAct:Q86V81 MINT:MINT-5001811 STRING:Q86V81 PhosphoSite:Q86V81
DMDM:48429165 PaxDb:Q86V81 PRIDE:Q86V81 DNASU:10189
Ensembl:ENST00000331204 GeneID:10189 KEGG:hsa:10189
GeneCards:GC17M079849 HGNC:HGNC:19071 HPA:CAB016281 HPA:HPA019799
MIM:604171 neXtProt:NX_Q86V81 PharmGKB:PA134925107
InParanoid:Q86V81 GenomeRNAi:10189 NextBio:38562 PMAP-CutDB:Q86V81
ArrayExpress:Q86V81 Bgee:Q86V81 CleanEx:HS_THOC4
Genevestigator:Q86V81 GermOnline:ENSG00000183684 Uniprot:Q86V81
Length = 257
Score = 271 (100.5 bits), Expect = 5.8e-27, Sum P(2) = 5.8e-27
Identities = 56/110 (50%), Positives = 80/110 (72%)
Query: 15 SSIESGTKLYISNLEYGVSNEDIKELFSEVGELKRCSVHFDRSGRSKGTAEVVLTRRADA 74
+ +E+G KL +SNL++GVS+ DI+ELF+E G LK+ +VH+DRSGRS GTA+V R+ADA
Sbjct: 100 AGVETGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDRSGRSLGTADVHFERKADA 159
Query: 75 IAAVKRYNNVQLDGKPMKIEIIGTNIGPPAAVLPITNVMYGNEIGMTRSR 124
+ A+K+YN V LDG+PM I+++ + I A P +V G GMTR+R
Sbjct: 160 LKAMKQYNGVPLDGRPMNIQLVTSQID--AQRRPAQSVNRG---GMTRNR 204
Score = 47 (21.6 bits), Expect = 5.8e-27, Sum P(2) = 5.8e-27
Identities = 9/18 (50%), Positives = 13/18 (72%)
Query: 164 AKPNLSVEDLDADLEKYH 181
+K LS E+LDA L+ Y+
Sbjct: 234 SKQQLSAEELDAQLDAYN 251
>UNIPROTKB|Q3T0I4 [details] [associations]
symbol:ALYREF "THO complex subunit 4" species:9913 "Bos
taurus" [GO:0016607 "nuclear speck" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0071013 "catalytic step 2
spliceosome" evidence=IEA] [GO:0046784 "intronless viral mRNA
export from host nucleus" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0003697 "single-stranded DNA binding"
evidence=IEA] [GO:0000346 "transcription export complex"
evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA] [GO:0006397
"mRNA processing" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005737 GO:GO:0008380
GO:GO:0000166 GO:GO:0016607 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0071013 InterPro:IPR025715 Pfam:PF13865
GO:GO:0000346 GO:GO:0046784 KO:K12881 HSSP:Q9NQ94 eggNOG:NOG316507
HOGENOM:HOG000239962 OrthoDB:EOG4MW87F EMBL:BC102384
IPI:IPI00710588 RefSeq:NP_001030494.1 UniGene:Bt.48992
ProteinModelPortal:Q3T0I4 SMR:Q3T0I4 STRING:Q3T0I4 PRIDE:Q3T0I4
Ensembl:ENSBTAT00000011202 GeneID:537706 KEGG:bta:537706 CTD:10189
GeneTree:ENSGT00410000025615 InParanoid:Q3T0I4 OMA:IRNRPAI
NextBio:20877198 Uniprot:Q3T0I4
Length = 257
Score = 269 (99.8 bits), Expect = 9.4e-27, Sum P(2) = 9.4e-27
Identities = 55/110 (50%), Positives = 79/110 (71%)
Query: 15 SSIESGTKLYISNLEYGVSNEDIKELFSEVGELKRCSVHFDRSGRSKGTAEVVLTRRADA 74
+ +E+G KL +SNL++GVS+ DI+ELF+E G LK+ +VH+DRSGRS GTA+V R+ADA
Sbjct: 100 AGVETGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDRSGRSLGTADVHFERKADA 159
Query: 75 IAAVKRYNNVQLDGKPMKIEIIGTNIGPPAAVLPITNVMYGNEIGMTRSR 124
+ A+K+YN V LDG+PM I+++ + I P +V G GMTR+R
Sbjct: 160 LKAMKQYNGVPLDGRPMNIQLVTSQIDTQRR--PAQSVNRG---GMTRNR 204
Score = 47 (21.6 bits), Expect = 9.4e-27, Sum P(2) = 9.4e-27
Identities = 9/18 (50%), Positives = 13/18 (72%)
Query: 164 AKPNLSVEDLDADLEKYH 181
+K LS E+LDA L+ Y+
Sbjct: 234 SKQQLSAEELDAQLDAYN 251
>UNIPROTKB|F1PL92 [details] [associations]
symbol:ALYREF "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR025715
Pfam:PF13865 GeneTree:ENSGT00410000025615 OMA:IRNRPAI
EMBL:AAEX03006169 Ensembl:ENSCAFT00000009466 Uniprot:F1PL92
Length = 257
Score = 269 (99.8 bits), Expect = 9.4e-27, Sum P(2) = 9.4e-27
Identities = 55/110 (50%), Positives = 79/110 (71%)
Query: 15 SSIESGTKLYISNLEYGVSNEDIKELFSEVGELKRCSVHFDRSGRSKGTAEVVLTRRADA 74
+ +E+G KL +SNL++GVS+ DI+ELF+E G LK+ +VH+DRSGRS GTA+V R+ADA
Sbjct: 100 AGVETGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDRSGRSLGTADVHFERKADA 159
Query: 75 IAAVKRYNNVQLDGKPMKIEIIGTNIGPPAAVLPITNVMYGNEIGMTRSR 124
+ A+K+YN V LDG+PM I+++ + I P +V G GMTR+R
Sbjct: 160 LKAMKQYNGVPLDGRPMNIQLVTSQIDTQRR--PAQSVNRG---GMTRNR 204
Score = 47 (21.6 bits), Expect = 9.4e-27, Sum P(2) = 9.4e-27
Identities = 9/18 (50%), Positives = 13/18 (72%)
Query: 164 AKPNLSVEDLDADLEKYH 181
+K LS E+LDA L+ Y+
Sbjct: 234 SKQQLSAEELDAQLDAYN 251
>MGI|MGI:1341044 [details] [associations]
symbol:Alyref "Aly/REF export factor" species:10090 "Mus
musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0000346 "transcription export complex" evidence=ISO]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003697
"single-stranded DNA binding" evidence=IDA] [GO:0003723 "RNA
binding" evidence=IDA] [GO:0005634 "nucleus" evidence=TAS]
[GO:0005681 "spliceosomal complex" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0006406 "mRNA export from nucleus" evidence=ISO]
[GO:0006810 "transport" evidence=IEA] [GO:0008380 "RNA splicing"
evidence=IEA] [GO:0046784 "intronless viral mRNA export from host
nucleus" evidence=ISO] [GO:0051028 "mRNA transport" evidence=IEA]
[GO:0071013 "catalytic step 2 spliceosome" evidence=ISO]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 MGI:MGI:1341044 GO:GO:0005634 GO:GO:0005737
GO:GO:0008380 GO:GO:0000166 GO:GO:0016607 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0005681 GO:GO:0003723 EMBL:CH466558
GO:GO:0003697 GO:GO:0051028 EMBL:AL663030 InterPro:IPR025715
Pfam:PF13865 KO:K12881 eggNOG:NOG316507 HOGENOM:HOG000239962
HOVERGEN:HBG054806 OrthoDB:EOG4MW87F CTD:10189
GeneTree:ENSGT00410000025615 OMA:IRNRPAI EMBL:U89876 EMBL:AJ252140
EMBL:BC120588 EMBL:BC137658 EMBL:AK035721 IPI:IPI00114407
IPI:IPI00122339 RefSeq:NP_035698.1 UniGene:Mm.1886 PDB:1NO8
PDBsum:1NO8 ProteinModelPortal:O08583 SMR:O08583 DIP:DIP-59977N
STRING:O08583 PhosphoSite:O08583 PaxDb:O08583 PRIDE:O08583
Ensembl:ENSMUST00000026125 GeneID:21681 KEGG:mmu:21681
UCSC:uc007mtl.1 InParanoid:Q0VBL5 EvolutionaryTrace:O08583
NextBio:300988 Bgee:O08583 CleanEx:MM_THOC4 Genevestigator:O08583
GermOnline:ENSMUSG00000025134 Uniprot:O08583
Length = 255
Score = 268 (99.4 bits), Expect = 1.2e-26, Sum P(2) = 1.2e-26
Identities = 54/110 (49%), Positives = 79/110 (71%)
Query: 15 SSIESGTKLYISNLEYGVSNEDIKELFSEVGELKRCSVHFDRSGRSKGTAEVVLTRRADA 74
+ +E+G KL +SNL++GVS+ DI+ELF+E G LK+ +VH+DRSGRS GTA+V R+ADA
Sbjct: 99 AGVETGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDRSGRSLGTADVHFERKADA 158
Query: 75 IAAVKRYNNVQLDGKPMKIEIIGTNIGPPAAVLPITNVMYGNEIGMTRSR 124
+ A+K+YN V LDG+PM I+++ + I P ++ G GMTR+R
Sbjct: 159 LKAMKQYNGVPLDGRPMNIQLVTSQIDTQRR--PAQSINRG---GMTRNR 203
Score = 47 (21.6 bits), Expect = 1.2e-26, Sum P(2) = 1.2e-26
Identities = 9/18 (50%), Positives = 13/18 (72%)
Query: 164 AKPNLSVEDLDADLEKYH 181
+K LS E+LDA L+ Y+
Sbjct: 232 SKQQLSAEELDAQLDAYN 249
>ZFIN|ZDB-GENE-070928-29 [details] [associations]
symbol:alyref "Aly/REF export factor" species:7955
"Danio rerio" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-070928-29 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 InterPro:IPR025715 Pfam:PF13865
GeneTree:ENSGT00410000025615 OMA:IRNRPAI EMBL:CU693479
IPI:IPI00868115 Ensembl:ENSDART00000108647 ArrayExpress:F1Q9D1
Bgee:F1Q9D1 Uniprot:F1Q9D1
Length = 280
Score = 268 (99.4 bits), Expect = 1.2e-26, Sum P(2) = 1.2e-26
Identities = 55/115 (47%), Positives = 81/115 (70%)
Query: 15 SSIESGTKLYISNLEYGVSNEDIKELFSEVGELKRCSVHFDRSGRSKGTAEVVLTRRADA 74
+ +E+G KL +SNL++GVS+ DI+ELF+E G LK+ +VH+DRSGRS GTA+V R+ADA
Sbjct: 119 AGVETGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDRSGRSLGTADVHFERKADA 178
Query: 75 IAAVKRYNNVQLDGKPMKIEIIGTNIGPPAAVLPITNVMYGNEIGMTRSRLRMGG 129
+ A+K+YN V LDG+PM I+++ + I P+ + G GM R+R+ GG
Sbjct: 179 LKAMKQYNGVPLDGRPMNIQLVTSQIDAQRRT-PMQGLNRGGG-GMNRNRV--GG 229
Score = 47 (21.6 bits), Expect = 1.2e-26, Sum P(2) = 1.2e-26
Identities = 9/18 (50%), Positives = 13/18 (72%)
Query: 164 AKPNLSVEDLDADLEKYH 181
+K LS E+LDA L+ Y+
Sbjct: 257 SKQQLSAEELDAQLDAYN 274
>MGI|MGI:1913144 [details] [associations]
symbol:Alyref2 "Aly/REF export factor 2" species:10090 "Mus
musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003697
"single-stranded DNA binding" evidence=IDA] [GO:0003723 "RNA
binding" evidence=IDA] [GO:0005575 "cellular_component"
evidence=ND] [GO:0005634 "nucleus" evidence=IEA] [GO:0005681
"spliceosomal complex" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0006810 "transport" evidence=IEA] [GO:0008150
"biological_process" evidence=ND] [GO:0008380 "RNA splicing"
evidence=IEA] [GO:0051028 "mRNA transport" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 MGI:MGI:1913144 GO:GO:0005737 GO:GO:0008380
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0005681
GO:GO:0003723 GO:GO:0003697 GO:GO:0051028 InterPro:IPR025715
Pfam:PF13865 KO:K12881 EMBL:AJ252141 EMBL:AK048243 IPI:IPI00311103
IPI:IPI00377350 RefSeq:NP_062357.3 UniGene:Mm.389208 PDB:2F3J
PDB:2KT5 PDB:2YKA PDBsum:2F3J PDBsum:2KT5 PDBsum:2YKA
ProteinModelPortal:Q9JJW6 SMR:Q9JJW6 IntAct:Q9JJW6 STRING:Q9JJW6
PhosphoSite:Q9JJW6 PaxDb:Q9JJW6 PRIDE:Q9JJW6 GeneID:56009
KEGG:mmu:56009 CTD:56009 eggNOG:NOG316507 HOGENOM:HOG000239962
HOVERGEN:HBG054806 InParanoid:Q9JJW6 OrthoDB:EOG4MW87F
EvolutionaryTrace:Q9JJW6 NextBio:311734 CleanEx:MM_REFBP2
Genevestigator:Q9JJW6 GermOnline:ENSMUSG00000060244 Uniprot:Q9JJW6
Length = 218
Score = 272 (100.8 bits), Expect = 1.5e-26, Sum P(2) = 1.5e-26
Identities = 56/108 (51%), Positives = 77/108 (71%)
Query: 17 IESGTKLYISNLEYGVSNEDIKELFSEVGELKRCSVHFDRSGRSKGTAEVVLTRRADAIA 76
+E+G KL +SNL++GVS+ DI+ELF+E G LK+ +V +DRSGRS GTA+V RRADA+
Sbjct: 71 VETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDRSGRSLGTADVHFERRADALK 130
Query: 77 AVKRYNNVQLDGKPMKIEIIGTNIGPPAAVLPITNVMYGNEIGMTRSR 124
A+K+Y V LDG+PM I+++ + I P P + GN GMTRSR
Sbjct: 131 AMKQYKGVPLDGRPMDIQLVASQIDPQRR--PAQS---GNRGGMTRSR 173
Score = 42 (19.8 bits), Expect = 1.5e-26, Sum P(2) = 1.5e-26
Identities = 8/14 (57%), Positives = 11/14 (78%)
Query: 168 LSVEDLDADLEKYH 181
LS E+LDA L+ Y+
Sbjct: 199 LSAEELDAQLDAYN 212
>FB|FBgn0010774 [details] [associations]
symbol:Ref1 "RNA and export factor binding protein 1"
species:7227 "Drosophila melanogaster" [GO:0003713 "transcription
coactivator activity" evidence=ISS] [GO:0003729 "mRNA binding"
evidence=ISS] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005654
"nucleoplasm" evidence=IDA] [GO:0031965 "nuclear membrane"
evidence=IDA] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=IC] [GO:0071013 "catalytic step 2 spliceosome"
evidence=IDA] [GO:0071011 "precatalytic spliceosome" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 EMBL:AE014297 GO:GO:0005654 GO:GO:0000166
GO:GO:0031965 GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0003713
GO:GO:0071011 GO:GO:0000398 GO:GO:0071013 InterPro:IPR025715
Pfam:PF13865 KO:K12881 HSSP:O08583 eggNOG:NOG316507
GeneTree:ENSGT00410000025615 OMA:IRNRPAI ChiTaRS:ALYREF
EMBL:AF172637 RefSeq:NP_651968.1 UniGene:Dm.3104 SMR:Q9V3E7
IntAct:Q9V3E7 MINT:MINT-318070 STRING:Q9V3E7
EnsemblMetazoa:FBtr0081642 GeneID:44029 KEGG:dme:Dmel_CG1101
UCSC:CG1101-RA CTD:44029 FlyBase:FBgn0010774 InParanoid:Q9V3E7
OrthoDB:EOG470S0M GenomeRNAi:44029 NextBio:836635 Uniprot:Q9V3E7
Length = 266
Score = 255 (94.8 bits), Expect = 3.0e-24, Sum P(2) = 3.0e-24
Identities = 52/113 (46%), Positives = 78/113 (69%)
Query: 19 SG-TKLYISNLEYGVSNEDIKELFSEVGELKRCSVHFDRSGRSKGTAEVVLTRRADAIAA 77
SG T+L + NL+YGVSN DIKELF++ G +K+ +VH+DRSGRS GTA+V+ RRADA+ A
Sbjct: 106 SGPTRLIVGNLDYGVSNTDIKELFNDFGPIKKAAVHYDRSGRSLGTADVIFERRADALKA 165
Query: 78 VKRYNNVQLDGKPMKIEIIGTNIGPPAAVLPITNVMYGNEIGMTR-SRLRMGG 129
+K+Y+ V LDG+PM I++ +++ + T+V +G T + + GG
Sbjct: 166 IKQYHGVPLDGRPMTIQLAVSDVAVLTRPVAATDVK--RRVGGTAPTSFKRGG 216
Score = 37 (18.1 bits), Expect = 3.0e-24, Sum P(2) = 3.0e-24
Identities = 6/12 (50%), Positives = 10/12 (83%)
Query: 169 SVEDLDADLEKY 180
+ E+LDA+L+ Y
Sbjct: 249 TAEELDAELDSY 260
>RGD|1594679 [details] [associations]
symbol:Thoc4 "THO complex 4" species:10116 "Rattus norvegicus"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0000346
"transcription export complex" evidence=IEA] [GO:0003697
"single-stranded DNA binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0046784 "intronless viral mRNA export
from host nucleus" evidence=IEA] [GO:0071013 "catalytic step 2
spliceosome" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 RGD:1594679
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:CH473948
KO:K12881 GeneTree:ENSGT00410000025615 IPI:IPI00768839
RefSeq:NP_001103072.1 UniGene:Rn.6994 Ensembl:ENSRNOT00000054955
GeneID:690585 KEGG:rno:690585 CTD:690585 NextBio:741240
Uniprot:D3ZXH7
Length = 189
Score = 225 (84.3 bits), Expect = 1.1e-18, P = 1.1e-18
Identities = 42/73 (57%), Positives = 59/73 (80%)
Query: 15 SSIESGTKLYISNLEYGVSNEDIKELFSEVGELKRCSVHFDRSGRSKGTAEVVLTRRADA 74
+ +E+G KL +SNL++GVS+ DI+ELF+E G LK+ +VH+DRSGRS GTA+V R+ADA
Sbjct: 100 AGVETGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDRSGRSLGTADVHFERKADA 159
Query: 75 IAAVKRYNNVQLD 87
+ A+K+YN V LD
Sbjct: 160 LKAMKQYNGVPLD 172
>DICTYBASE|DDB_G0285361 [details] [associations]
symbol:DDB_G0285361 "RNA-binding region RNP-1
domain-containing protein" species:44689 "Dictyostelium discoideum"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0008150 "biological_process"
evidence=ND] [GO:0044351 "macropinocytosis" evidence=RCA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 dictyBase:DDB_G0285361 GO:GO:0000166
EMBL:AAFI02000079 Gene3D:3.30.70.330 GO:GO:0003676 KO:K12881
eggNOG:NOG316507 RefSeq:XP_638266.1 ProteinModelPortal:Q54NB4
IntAct:Q54NB4 STRING:Q54NB4 PRIDE:Q54NB4 EnsemblProtists:DDB0233771
GeneID:8625074 KEGG:ddi:DDB_G0285361 InParanoid:Q54NB4 OMA:ISNLHHA
Uniprot:Q54NB4
Length = 327
Score = 211 (79.3 bits), Expect = 3.9e-17, P = 3.9e-17
Identities = 38/81 (46%), Positives = 58/81 (71%)
Query: 13 RSSSIESGTKLYISNLEYGVSNEDIKELFSEVGELKRCSVHFDRSGRSKGTAEVVLTRRA 72
+S + +G++L ISNL + +S D+K LF +GE+K+ +H+D SGRS GT V+ +R
Sbjct: 233 KSLQLFTGSRLNISNLHHAISEADLKVLFDSLGEIKQIKIHYDHSGRSDGTGYVIYSRHN 292
Query: 73 DAIAAVKRYNNVQLDGKPMKI 93
DA+AA+K+YN QLDG+ +KI
Sbjct: 293 DAMAALKKYNGAQLDGRTLKI 313
>ASPGD|ASPL0000065384 [details] [associations]
symbol:AN7706 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0005575 "cellular_component" evidence=ND]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:BN001304 EMBL:AACD01000131 InterPro:IPR025715 Pfam:PF13865
KO:K12881 eggNOG:NOG316507 OrthoDB:EOG4DV8WK RefSeq:XP_680975.1
ProteinModelPortal:Q5AVH4 EnsemblFungi:CADANIAT00000838
GeneID:2869696 KEGG:ani:AN7706.2 HOGENOM:HOG000174259 OMA:LHYDITE
Uniprot:Q5AVH4
Length = 328
Score = 171 (65.3 bits), Expect = 1.4e-14, Sum P(2) = 1.4e-14
Identities = 34/87 (39%), Positives = 54/87 (62%)
Query: 16 SIESGTKLYISNLEYGVSNEDIKELFSEVGELKRCSVHFDRSGRSKGTAEVVLTRRADAI 75
S +GT+L I NL Y ++ D++ELFS +G + S+ +DR+GRS+G A V +R DA
Sbjct: 81 SASAGTRLRIENLHYDITETDLEELFSRIGPISNVSLVYDRAGRSEGVAYVTYSRYNDAK 140
Query: 76 AAVKRYNNVQLDGKPMKIEIIGTNIGP 102
A+ ++ G+P++I I T+ GP
Sbjct: 141 TAIAEFDGANAKGQPIRISI--TSSGP 165
Score = 37 (18.1 bits), Expect = 1.4e-14, Sum P(2) = 1.4e-14
Identities = 6/16 (37%), Positives = 11/16 (68%)
Query: 165 KPNLSVEDLDADLEKY 180
+P + E+LD ++E Y
Sbjct: 264 RPKKTQEELDQEMEDY 279
>POMBASE|SPBC1D7.04 [details] [associations]
symbol:mlo3 "RNA binding protein Mlo3" species:4896
"Schizosaccharomyces pombe" [GO:0000346 "transcription export
complex" evidence=ISO] [GO:0003723 "RNA binding" evidence=ISO]
[GO:0005515 "protein binding" evidence=IPI] [GO:0005634 "nucleus"
evidence=IDA] [GO:0016973 "poly(A)+ mRNA export from nucleus"
evidence=IGI;IMP] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 PomBase:SPBC1D7.04
GO:GO:0000166 EMBL:CU329671 Gene3D:3.30.70.330
GenomeReviews:CU329671_GR GO:GO:0003723 eggNOG:COG0724
GO:GO:0016973 GO:GO:0000346 EMBL:L42551 PIR:T39861
RefSeq:NP_595715.1 ProteinModelPortal:Q09330 STRING:Q09330
EnsemblFungi:SPBC1D7.04.1 GeneID:2540565 KEGG:spo:SPBC1D7.04
HOGENOM:HOG000177542 KO:K12881 OMA:KGIATII OrthoDB:EOG4QNR5V
NextBio:20801691 Uniprot:Q09330
Length = 199
Score = 146 (56.5 bits), Expect = 4.2e-13, Sum P(2) = 4.2e-13
Identities = 33/84 (39%), Positives = 50/84 (59%)
Query: 15 SSIESGTKLYISNLEYGVSNEDIKELF-SEVGELKRCSVHFDRSGRSKGTAEVVLTRRAD 73
S I +K+ +SNL V+ +KELF +G KR S+ + +GRSKG A ++ +R D
Sbjct: 49 SVISEESKIIVSNLPTDVTEAQVKELFVKSIGPCKRVSLAYGPNGRSKGIATIIFSRPGD 108
Query: 74 AIAAVKRYNNVQLDG-KPMKIEII 96
A A ++Y +DG + MK+EII
Sbjct: 109 ATRAYEQYEGRLVDGTRKMKVEII 132
Score = 39 (18.8 bits), Expect = 4.2e-13, Sum P(2) = 4.2e-13
Identities = 6/16 (37%), Positives = 11/16 (68%)
Query: 165 KPNLSVEDLDADLEKY 180
+P S E+LD +++ Y
Sbjct: 177 RPKKSAEELDKEMDDY 192
>FB|FBgn0032439 [details] [associations]
symbol:Ref2 "RNA and export factor binding protein 2"
species:7227 "Drosophila melanogaster" [GO:0003729 "mRNA binding"
evidence=ISS] [GO:0006406 "mRNA export from nucleus" evidence=NAS]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 GO:GO:0003729 Gene3D:3.30.70.330 HSSP:O08583
EMBL:AJ459410 ProteinModelPortal:Q8IFW5 SMR:Q8IFW5 STRING:Q8IFW5
PRIDE:Q8IFW5 FlyBase:FBgn0032439 InParanoid:Q8IFW5
OrthoDB:EOG470S0C Bgee:Q8IFW5 Uniprot:Q8IFW5
Length = 220
Score = 161 (61.7 bits), Expect = 6.4e-12, P = 6.4e-12
Identities = 28/76 (36%), Positives = 52/76 (68%)
Query: 21 TKLYISNLEYGVSNEDIKELFSEVGELKRCSVHFDRSGRSKGTAEVVLTRRADAIAAVKR 80
T + + NL+YGV ++DI ELF++ G +++ VH+DR G S GTA + R +A +++
Sbjct: 75 TLVMVCNLDYGVDDDDIMELFNQDGVVEKGFVHYDRDGNSLGTAHLSFKYREEAFQIIEQ 134
Query: 81 YNNVQLDGKPMKIEII 96
++ V+LDG+ +K+ ++
Sbjct: 135 FHGVRLDGRRLKLHLV 150
>WB|WBGene00000122 [details] [associations]
symbol:aly-3 species:6239 "Caenorhabditis elegans"
[GO:0040011 "locomotion" evidence=IMP] InterPro:IPR000504
InterPro:IPR012677 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0040011 GO:GO:0003676 InterPro:IPR025715 Pfam:PF13865
EMBL:Z68507 KO:K12881 HSSP:O08583 eggNOG:NOG316507
HOGENOM:HOG000239962 GeneTree:ENSGT00680000100596 PIR:T23797
RefSeq:NP_001076697.1 ProteinModelPortal:Q21559 SMR:Q21559
DIP:DIP-25095N IntAct:Q21559 MINT:MINT-1102492 STRING:Q21559
PaxDb:Q21559 PRIDE:Q21559 EnsemblMetazoa:M18.7a.1
EnsemblMetazoa:M18.7a.2 GeneID:178157 KEGG:cel:CELE_M18.7
UCSC:M18.7a.1 CTD:178157 WormBase:M18.7a InParanoid:Q21559
OMA:DFGNRSR NextBio:899954 ArrayExpress:Q21559 Uniprot:Q21559
Length = 240
Score = 130 (50.8 bits), Expect = 1.6e-11, Sum P(2) = 1.6e-11
Identities = 31/78 (39%), Positives = 49/78 (62%)
Query: 22 KLYISNLEYGVSNEDIKELFSEVGELKRCSVHFDRSGRSKGTAEVVLTRRADAIAAVKRY 81
++ ISNL V + D++ELF + L SV+F+ G S GT ++ LT+R DA V+++
Sbjct: 75 RVNISNLAPTVISSDLEELFGDY-RLSSVSVNFNEHGDSLGTGDISLTKR-DAERLVQKF 132
Query: 82 NNVQLDGKPMKIEIIGTN 99
+ V LDGK MK +I ++
Sbjct: 133 SGVALDGKIMKFAVIDSS 150
Score = 45 (20.9 bits), Expect = 1.6e-11, Sum P(2) = 1.6e-11
Identities = 9/17 (52%), Positives = 12/17 (70%)
Query: 164 AKPNLSVEDLDADLEKY 180
AKP + +LDA+LE Y
Sbjct: 218 AKPKKTEAELDAELEAY 234
>WB|WBGene00000120 [details] [associations]
symbol:aly-1 species:6239 "Caenorhabditis elegans"
[GO:0040011 "locomotion" evidence=IMP] InterPro:IPR000504
InterPro:IPR012677 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0040011 GO:GO:0003676 InterPro:IPR025715 Pfam:PF13865
EMBL:Z68213 KO:K12881 HSSP:O08583 HOGENOM:HOG000239962
GeneTree:ENSGT00680000100596 PIR:T18807 RefSeq:NP_501588.1
ProteinModelPortal:Q17561 SMR:Q17561 IntAct:Q17561 STRING:Q17561
PaxDb:Q17561 EnsemblMetazoa:C01F6.5 GeneID:177735
KEGG:cel:CELE_C01F6.5 UCSC:C01F6.5 CTD:177735 WormBase:C01F6.5
eggNOG:NOG289866 InParanoid:Q17561 OMA:DSANIAN NextBio:898152
Uniprot:Q17561
Length = 223
Score = 124 (48.7 bits), Expect = 3.0e-11, Sum P(2) = 3.0e-11
Identities = 29/81 (35%), Positives = 53/81 (65%)
Query: 22 KLYISNLEYGVSNEDIKELFSEVGELKRCSVHFDRSGRSKGTAEVVLTRR-ADAIAAVKR 80
++ +SNL + V + D+++LF+E +++ SV+F+ G+ GT +V L +R AD + +++
Sbjct: 73 RINLSNLAHTVHSGDLRQLFAEF-KIRNVSVNFNEHGKPVGTGDVTLPKRHADRL--IQK 129
Query: 81 YNNVQLDGKPMKIEIIGT-NI 100
+ V LDGK +K II + NI
Sbjct: 130 FAGVSLDGKEIKFAIIDSANI 150
Score = 47 (21.6 bits), Expect = 3.0e-11, Sum P(2) = 3.0e-11
Identities = 9/21 (42%), Positives = 16/21 (76%)
Query: 164 AKPNLSVEDLDADLEKYHIEA 184
A+P ++E+LDA+L+ Y +A
Sbjct: 203 AQPKKTLEELDAELDVYMSKA 223
>UNIPROTKB|Q5F4B6 [details] [associations]
symbol:POLDIP3 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0016607
"nuclear speck" evidence=IEA] [GO:0035145 "exon-exon junction
complex" evidence=IEA] [GO:0045727 "positive regulation of
translation" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
GO:GO:0016607 Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0045727
GO:GO:0035145 CTD:84271 eggNOG:NOG268669 HOVERGEN:HBG053550
OMA:QVPQQKA GeneTree:ENSGT00390000018868 OrthoDB:EOG4WSWBG
HOGENOM:HOG000013117 EMBL:AADN02006041 EMBL:AJ851384
IPI:IPI00600024 RefSeq:NP_001012832.1 UniGene:Gga.13560
STRING:Q5F4B6 Ensembl:ENSGALT00000019356 GeneID:417974
KEGG:gga:417974 InParanoid:Q5F4B6 NextBio:20821199 Uniprot:Q5F4B6
Length = 418
Score = 152 (58.6 bits), Expect = 3.6e-10, P = 3.6e-10
Identities = 39/82 (47%), Positives = 49/82 (59%)
Query: 15 SSIESGTKLYISNLEYGVSNEDIKELFSEVGELKRCS-VHFDRSGRSKGTAEVVLTRRAD 73
S +E GTK+ ++NL V+ EDI ELF G LKR VH G AEVV ++ D
Sbjct: 273 SPLE-GTKMTVNNLHPRVTEEDIVELFCVCGALKRARLVH-------PGVAEVVFVKKED 324
Query: 74 AIAAVKRYNNVQLDGKPMKIEI 95
AI A K+YNN LDG+PMK +
Sbjct: 325 AITAYKKYNNRCLDGQPMKCNL 346
>MGI|MGI:1921076 [details] [associations]
symbol:Poldip3 "polymerase (DNA-directed), delta interacting
protein 3" species:10090 "Mus musculus" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003674 "molecular_function"
evidence=ND] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0006417
"regulation of translation" evidence=IEA] [GO:0016607 "nuclear
speck" evidence=ISO] [GO:0045727 "positive regulation of
translation" evidence=ISO] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 MGI:MGI:1921076
GO:GO:0005737 GO:GO:0000166 GO:GO:0016607 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0045727 GO:GO:0035145 CTD:84271
eggNOG:NOG268669 HOVERGEN:HBG053550 OMA:QVPQQKA EMBL:AK081139
EMBL:AK083924 EMBL:AK087446 EMBL:AL591952 EMBL:BC037652
EMBL:BC046505 EMBL:BC058225 IPI:IPI00229721 RefSeq:NP_848742.1
UniGene:Mm.23758 ProteinModelPortal:Q8BG81 SMR:Q8BG81 IntAct:Q8BG81
STRING:Q8BG81 PhosphoSite:Q8BG81 PaxDb:Q8BG81 PRIDE:Q8BG81
Ensembl:ENSMUST00000058793 GeneID:73826 KEGG:mmu:73826
GeneTree:ENSGT00390000018868 InParanoid:B2FDB4 OrthoDB:EOG4WSWBG
ChiTaRS:POLDIP3 NextBio:339143 Bgee:Q8BG81 Genevestigator:Q8BG81
GermOnline:ENSMUSG00000041815 Uniprot:Q8BG81
Length = 420
Score = 151 (58.2 bits), Expect = 4.7e-10, P = 4.7e-10
Identities = 39/82 (47%), Positives = 49/82 (59%)
Query: 15 SSIESGTKLYISNLEYGVSNEDIKELFSEVGELKRCS-VHFDRSGRSKGTAEVVLTRRAD 73
S +E GTK+ ++NL V+ EDI ELF G LKR VH G AEVV ++ D
Sbjct: 275 SPLE-GTKMTVNNLHPRVTEEDIVELFCVCGALKRARLVH-------PGVAEVVFVKKDD 326
Query: 74 AIAAVKRYNNVQLDGKPMKIEI 95
AI A K+YNN LDG+PMK +
Sbjct: 327 AITAYKKYNNRCLDGQPMKCNL 348
>RGD|1311073 [details] [associations]
symbol:Poldip3 "polymerase (DNA-directed), delta interacting
protein 3" species:10116 "Rattus norvegicus" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=ISO]
[GO:0016607 "nuclear speck" evidence=IEA;ISO] [GO:0035145
"exon-exon junction complex" evidence=IEA;ISO] [GO:0043231
"intracellular membrane-bounded organelle" evidence=ISO]
[GO:0045727 "positive regulation of translation" evidence=IEA;ISO]
[GO:0005730 "nucleolus" evidence=ISO] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:1311073 GO:GO:0000166 GO:GO:0016607 Gene3D:3.30.70.330
GO:GO:0003676 GO:GO:0045727 GO:GO:0035145 EMBL:CH473950 CTD:84271
OMA:QVPQQKA GeneTree:ENSGT00390000018868 OrthoDB:EOG4WSWBG
IPI:IPI00777510 RefSeq:NP_001123978.1 UniGene:Rn.3893
Ensembl:ENSRNOT00000055988 GeneID:315170 KEGG:rno:315170
UCSC:RGD:1311073 NextBio:668820 Uniprot:D4A2B0
Length = 420
Score = 151 (58.2 bits), Expect = 4.7e-10, P = 4.7e-10
Identities = 39/82 (47%), Positives = 49/82 (59%)
Query: 15 SSIESGTKLYISNLEYGVSNEDIKELFSEVGELKRCS-VHFDRSGRSKGTAEVVLTRRAD 73
S +E GTK+ ++NL V+ EDI ELF G LKR VH G AEVV ++ D
Sbjct: 275 SPLE-GTKMTVNNLHPRVTEEDIVELFCVCGALKRARLVH-------PGVAEVVFVKKDD 326
Query: 74 AIAAVKRYNNVQLDGKPMKIEI 95
AI A K+YNN LDG+PMK +
Sbjct: 327 AITAYKKYNNRCLDGQPMKCNL 348
>UNIPROTKB|A7YW33 [details] [associations]
symbol:POLDIP3 "Polymerase (DNA-directed), delta
interacting protein 3" species:9913 "Bos taurus" [GO:0045727
"positive regulation of translation" evidence=IEA] [GO:0035145
"exon-exon junction complex" evidence=IEA] [GO:0016607 "nuclear
speck" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 GO:GO:0016607 Gene3D:3.30.70.330
GO:GO:0003676 GO:GO:0045727 GO:GO:0035145 CTD:84271
eggNOG:NOG268669 HOVERGEN:HBG053550 OMA:QVPQQKA
GeneTree:ENSGT00390000018868 OrthoDB:EOG4WSWBG HOGENOM:HOG000013117
EMBL:DAAA02014778 EMBL:BC134441 IPI:IPI00702003
RefSeq:NP_001096653.1 UniGene:Bt.10436 STRING:A7YW33
Ensembl:ENSBTAT00000021952 GeneID:512693 KEGG:bta:512693
InParanoid:A7YW33 NextBio:20870514 Uniprot:A7YW33
Length = 421
Score = 151 (58.2 bits), Expect = 4.8e-10, P = 4.8e-10
Identities = 39/82 (47%), Positives = 49/82 (59%)
Query: 15 SSIESGTKLYISNLEYGVSNEDIKELFSEVGELKRCS-VHFDRSGRSKGTAEVVLTRRAD 73
S +E GTK+ ++NL V+ EDI ELF G LKR VH G AEVV ++ D
Sbjct: 275 SPLE-GTKMTVNNLHPRVTEEDIVELFCVCGALKRARLVH-------PGVAEVVFVKKDD 326
Query: 74 AIAAVKRYNNVQLDGKPMKIEI 95
AI A K+YNN LDG+PMK +
Sbjct: 327 AITAYKKYNNRCLDGQPMKCNL 348
>UNIPROTKB|F1PS15 [details] [associations]
symbol:POLDIP3 "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
CTD:84271 GeneTree:ENSGT00390000018868 EMBL:AAEX03007273
RefSeq:XP_531709.3 Ensembl:ENSCAFT00000001487 GeneID:474480
KEGG:cfa:474480 Uniprot:F1PS15
Length = 421
Score = 151 (58.2 bits), Expect = 4.8e-10, P = 4.8e-10
Identities = 39/82 (47%), Positives = 49/82 (59%)
Query: 15 SSIESGTKLYISNLEYGVSNEDIKELFSEVGELKRCS-VHFDRSGRSKGTAEVVLTRRAD 73
S +E GTK+ ++NL V+ EDI ELF G LKR VH G AEVV ++ D
Sbjct: 275 SPLE-GTKMTVNNLHPRVTEEDIVELFCVCGALKRARLVH-------PGVAEVVFVKKDD 326
Query: 74 AIAAVKRYNNVQLDGKPMKIEI 95
AI A K+YNN LDG+PMK +
Sbjct: 327 AITAYKKYNNRCLDGQPMKCNL 348
>UNIPROTKB|Q9BY77 [details] [associations]
symbol:POLDIP3 "Polymerase delta-interacting protein 3"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0016607
"nuclear speck" evidence=IDA] [GO:0035145 "exon-exon junction
complex" evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0045727 "positive regulation of translation" evidence=IMP]
[GO:0005737 "cytoplasm" evidence=TAS] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005730 "nucleolus" evidence=IDA] [GO:0043231
"intracellular membrane-bounded organelle" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005737 GO:GO:0000166 GO:GO:0016607
Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0045727 EMBL:Z93241
EMBL:AY422990 EMBL:AB055760 EMBL:AL160111 EMBL:AL160112
EMBL:CR456456 EMBL:AK291623 EMBL:AK291774 EMBL:BC049840
EMBL:BC056912 EMBL:BC095411 EMBL:DQ887818 IPI:IPI00440688
IPI:IPI00440689 RefSeq:NP_115687.2 RefSeq:NP_835237.1
UniGene:Hs.741181 ProteinModelPortal:Q9BY77 SMR:Q9BY77
IntAct:Q9BY77 STRING:Q9BY77 PhosphoSite:Q9BY77 DMDM:50403796
PaxDb:Q9BY77 PRIDE:Q9BY77 DNASU:84271 Ensembl:ENST00000252115
Ensembl:ENST00000348657 GeneID:84271 KEGG:hsa:84271 UCSC:uc003bcu.3
UCSC:uc003bcv.3 CTD:84271 GeneCards:GC22M042979 HGNC:HGNC:23782
HPA:HPA018419 MIM:611520 neXtProt:NX_Q9BY77 PharmGKB:PA134899124
eggNOG:NOG268669 HOVERGEN:HBG053550 InParanoid:Q9BY77 OMA:QVPQQKA
PhylomeDB:Q9BY77 GenomeRNAi:84271 NextBio:73832 PMAP-CutDB:Q9BY77
ArrayExpress:Q9BY77 Bgee:Q9BY77 CleanEx:HS_POLDIP3
Genevestigator:Q9BY77 GermOnline:ENSG00000100227 Uniprot:Q9BY77
Length = 421
Score = 151 (58.2 bits), Expect = 4.8e-10, P = 4.8e-10
Identities = 39/82 (47%), Positives = 49/82 (59%)
Query: 15 SSIESGTKLYISNLEYGVSNEDIKELFSEVGELKRCS-VHFDRSGRSKGTAEVVLTRRAD 73
S +E GTK+ ++NL V+ EDI ELF G LKR VH G AEVV ++ D
Sbjct: 275 SPLE-GTKMTVNNLHPRVTEEDIVELFCVCGALKRARLVH-------PGVAEVVFVKKDD 326
Query: 74 AIAAVKRYNNVQLDGKPMKIEI 95
AI A K+YNN LDG+PMK +
Sbjct: 327 AITAYKKYNNRCLDGQPMKCNL 348
>UNIPROTKB|E2RT45 [details] [associations]
symbol:POLDIP3 "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
OMA:QVPQQKA GeneTree:ENSGT00390000018868 EMBL:AAEX03007273
Ensembl:ENSCAFT00000001488 NextBio:20850486 Uniprot:E2RT45
Length = 439
Score = 151 (58.2 bits), Expect = 5.2e-10, P = 5.2e-10
Identities = 39/82 (47%), Positives = 49/82 (59%)
Query: 15 SSIESGTKLYISNLEYGVSNEDIKELFSEVGELKRCS-VHFDRSGRSKGTAEVVLTRRAD 73
S +E GTK+ ++NL V+ EDI ELF G LKR VH G AEVV ++ D
Sbjct: 293 SPLE-GTKMTVNNLHPRVTEEDIVELFCVCGALKRARLVH-------PGVAEVVFVKKDD 344
Query: 74 AIAAVKRYNNVQLDGKPMKIEI 95
AI A K+YNN LDG+PMK +
Sbjct: 345 AITAYKKYNNRCLDGQPMKCNL 366
>WB|WBGene00000121 [details] [associations]
symbol:aly-2 species:6239 "Caenorhabditis elegans"
[GO:0040011 "locomotion" evidence=IMP] [GO:0000003 "reproduction"
evidence=IMP] InterPro:IPR012677 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0040011 GO:GO:0000003 InterPro:IPR025715 Pfam:PF13865
EMBL:Z82266 KO:K12881 HSSP:O08583 eggNOG:NOG316507
HOGENOM:HOG000239962 GeneTree:ENSGT00680000100596 PIR:T21298
RefSeq:NP_501594.1 ProteinModelPortal:O62183 SMR:O62183
STRING:O62183 PaxDb:O62183 EnsemblMetazoa:F23B2.6 GeneID:177738
KEGG:cel:CELE_F23B2.6 UCSC:F23B2.6 CTD:177738 WormBase:F23B2.6
InParanoid:O62183 OMA:QVRINIS NextBio:898176 Uniprot:O62183
Length = 227
Score = 117 (46.2 bits), Expect = 8.3e-10, Sum P(2) = 8.3e-10
Identities = 28/83 (33%), Positives = 48/83 (57%)
Query: 14 SSSIESGTKLYISNLEYGVSNEDIKELFSEVGELKRCSVHFDRSGRSKGTAEVVLTRRAD 73
SS+ ++ ISNL V + D++ELF L + SV+F+ +G + GT ++ L ++ D
Sbjct: 73 SSNDNKQVRINISNLAETVISSDLQELFGAFN-LHKVSVNFNENGGAAGTGDITL-KKYD 130
Query: 74 AIAAVKRYNNVQLDGKPMKIEII 96
A ++++ V LDGK M +I
Sbjct: 131 ADRLIQKFAGVALDGKVMHFAVI 153
Score = 42 (19.8 bits), Expect = 8.3e-10, Sum P(2) = 8.3e-10
Identities = 8/16 (50%), Positives = 11/16 (68%)
Query: 165 KPNLSVEDLDADLEKY 180
KP + E LDA+L+ Y
Sbjct: 207 KPPKTAEQLDAELDAY 222
>GENEDB_PFALCIPARUM|PFF0760w [details] [associations]
symbol:PFF0760w "RNA and export factor binding
protein, putative" species:5833 "Plasmodium falciparum" [GO:0003723
"RNA binding" evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AL844505 RefSeq:XP_966143.1
ProteinModelPortal:C6KSZ8 EnsemblProtists:PFF0760w:mRNA
GeneID:3885869 KEGG:pfa:PFF0760w EuPathDB:PlasmoDB:PF3D7_0615700
HOGENOM:HOG000281520 ProtClustDB:CLSZ2444924 Uniprot:C6KSZ8
Length = 156
Score = 136 (52.9 bits), Expect = 2.9e-09, P = 2.9e-09
Identities = 27/75 (36%), Positives = 47/75 (62%)
Query: 22 KLYISNLEYGVSNEDIKELFSEVGELKRCSVHFDRSGRSKGTAEVVLTRRADAIAAVKRY 81
++ ISNL+Y +S D+ ELFS V ++ +++D + RS GTA V DA A+ +Y
Sbjct: 65 RVKISNLDYTISKNDLMELFSNVCKVVNAWINYDHTDRSNGTAVCVFENINDAQKAIDKY 124
Query: 82 NNVQLDGKPMKIEII 96
+ +++G +K+EI+
Sbjct: 125 DGSEIEGLSIKMEIL 139
>TAIR|locus:2049721 [details] [associations]
symbol:AT2G37220 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0009507 "chloroplast" evidence=ISM;IDA] [GO:0009579 "thylakoid"
evidence=IDA] [GO:0009941 "chloroplast envelope" evidence=IDA]
[GO:0009535 "chloroplast thylakoid membrane" evidence=IDA]
[GO:0009570 "chloroplast stroma" evidence=IDA] [GO:0009409
"response to cold" evidence=IEP;RCA] [GO:0010319 "stromule"
evidence=IDA] [GO:0045087 "innate immune response" evidence=IDA]
[GO:0008266 "poly(U) RNA binding" evidence=IDA] [GO:0009737
"response to abscisic acid stimulus" evidence=IEP] [GO:0009534
"chloroplast thylakoid" evidence=IDA] [GO:0009697 "salicylic acid
biosynthetic process" evidence=RCA] [GO:0009814 "defense response,
incompatible interaction" evidence=RCA] [GO:0019684
"photosynthesis, light reaction" evidence=RCA] [GO:0042742 "defense
response to bacterium" evidence=RCA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0009737 GO:GO:0009570 EMBL:CP002685 GenomeReviews:CT485783_GR
GO:GO:0008266 GO:GO:0000166 GO:GO:0009409 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0045087 GO:GO:0009941 EMBL:AC005896
GO:GO:0030529 GO:GO:0009535 GO:GO:0010319 eggNOG:COG0724
HOGENOM:HOG000276232 EMBL:AC006260 KO:K11294 EMBL:AF370167
EMBL:AY048251 EMBL:AY059129 IPI:IPI00540246 PIR:A84790
RefSeq:NP_181259.1 UniGene:At.25300 ProteinModelPortal:Q9ZUU4
SMR:Q9ZUU4 IntAct:Q9ZUU4 STRING:Q9ZUU4 SWISS-2DPAGE:Q9ZUU4
PaxDb:Q9ZUU4 PRIDE:Q9ZUU4 ProMEX:Q9ZUU4 EnsemblPlants:AT2G37220.1
GeneID:818299 KEGG:ath:AT2G37220 GeneFarm:4058 TAIR:At2g37220
InParanoid:Q9ZUU4 OMA:PFNVDSA PhylomeDB:Q9ZUU4
ProtClustDB:CLSN2684922 Genevestigator:Q9ZUU4 GermOnline:AT2G37220
Uniprot:Q9ZUU4
Length = 289
Score = 140 (54.3 bits), Expect = 3.2e-09, P = 3.2e-09
Identities = 27/92 (29%), Positives = 53/92 (57%)
Query: 13 RSSSIESGTKLYISNLEYGVSNEDIKELFSEVGELKRCSVHFDR-SGRSKGTAEVVLTRR 71
+ S + KL++ NL + V + + +LF G ++ V +D+ +GRS+G V ++
Sbjct: 83 KEQSFSADLKLFVGNLPFNVDSAQLAQLFESAGNVEMVEVIYDKITGRSRGFGFVTMSSV 142
Query: 72 ADAIAAVKRYNNVQLDGKPMKIEIIGTNIGPP 103
++ AA +++N +LDG+P+++ N GPP
Sbjct: 143 SEVEAAAQQFNGYELDGRPLRV-----NAGPP 169
Score = 129 (50.5 bits), Expect = 5.4e-08, P = 5.4e-08
Identities = 28/80 (35%), Positives = 45/80 (56%)
Query: 15 SSIESGTKLYISNLEYGVSNEDIKELFSEVGELKRCSVHFDR-SGRSKGTAEVVLTRRAD 73
S SG ++Y+ NL +GV + ++ LFSE G++ V +DR SGRSKG V +
Sbjct: 198 SGAGSGNRVYVGNLSWGVDDMALESLFSEQGKVVEARVIYDRDSGRSKGFGFVTYDSSQE 257
Query: 74 AIAAVKRYNNVQLDGKPMKI 93
A+K + LDG+ +++
Sbjct: 258 VQNAIKSLDGADLDGRQIRV 277
>UNIPROTKB|B4DMM2 [details] [associations]
symbol:POLDIP3 "Polymerase delta-interacting protein 3"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:Z93241 UniGene:Hs.741181 HGNC:HGNC:23782 EMBL:AK297532
IPI:IPI00940039 SMR:B4DMM2 STRING:B4DMM2 Ensembl:ENST00000451060
Uniprot:B4DMM2
Length = 186
Score = 132 (51.5 bits), Expect = 7.6e-09, P = 7.6e-09
Identities = 36/75 (48%), Positives = 44/75 (58%)
Query: 15 SSIESGTKLYISNLEYGVSNEDIKELFSEVGELKRCS-VHFDRSGRSKGTAEVVLTRRAD 73
S +E GTK+ ++NL V+ EDI ELF G LKR VH G AEVV ++ D
Sbjct: 119 SPLE-GTKMTVNNLHPRVTEEDIVELFCVCGALKRARLVH-------PGVAEVVFVKKDD 170
Query: 74 AIAAVKRYNNVQLDG 88
AI A K+YNN LDG
Sbjct: 171 AITAYKKYNNRCLDG 185
>UNIPROTKB|F1NIP6 [details] [associations]
symbol:MYEF2 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00410000025635 EMBL:AADN02045251 EMBL:AADN02045250
IPI:IPI00596605 Ensembl:ENSGALT00000007847 ArrayExpress:F1NIP6
Uniprot:F1NIP6
Length = 541
Score = 127 (49.8 bits), Expect = 1.4e-08, Sum P(2) = 1.4e-08
Identities = 22/76 (28%), Positives = 46/76 (60%)
Query: 20 GTKLYISNLEYGVSNEDIKELFSEVGELKRCSVHFDRSGRSKGTAEVVLTRRADAIAAVK 79
G+ ++++NL++ V + +KE+FS G +KR + D+ G+S+G V + +A+ A+
Sbjct: 182 GSTIFVANLDFKVGWKKLKEVFSIAGTVKRADIKEDKDGKSRGMGTVTFEQAIEAVQAIS 241
Query: 80 RYNNVQLDGKPMKIEI 95
+N L +PM +++
Sbjct: 242 MFNGQFLFDRPMHVKM 257
Score = 34 (17.0 bits), Expect = 1.4e-08, Sum P(2) = 1.4e-08
Identities = 7/24 (29%), Positives = 11/24 (45%)
Query: 96 IGTNIGPPAAVLPITNVMYGNEIG 119
IG +GP + T + G +G
Sbjct: 284 IGMGLGPGGQPISATQLSMGGGMG 307
>UNIPROTKB|Q5ZHY2 [details] [associations]
symbol:MYEF2 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005794 "Golgi apparatus" evidence=IEA]
[GO:0014902 "myotube differentiation" evidence=IEA] [GO:0030182
"neuron differentiation" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0005794 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 eggNOG:COG0724 GeneTree:ENSGT00410000025635
HOGENOM:HOG000231932 HOVERGEN:HBG054880 CTD:50804 OMA:HEEYRSH
OrthoDB:EOG4VDPZN EMBL:AADN02045251 EMBL:AADN02045250 EMBL:AJ721002
IPI:IPI00585337 RefSeq:NP_001012786.1 UniGene:Gga.16840 SMR:Q5ZHY2
Ensembl:ENSGALT00000007846 GeneID:415432 KEGG:gga:415432
InParanoid:Q5ZHY2 NextBio:20819040 Uniprot:Q5ZHY2
Length = 616
Score = 127 (49.8 bits), Expect = 2.0e-08, Sum P(2) = 2.0e-08
Identities = 22/76 (28%), Positives = 46/76 (60%)
Query: 20 GTKLYISNLEYGVSNEDIKELFSEVGELKRCSVHFDRSGRSKGTAEVVLTRRADAIAAVK 79
G+ ++++NL++ V + +KE+FS G +KR + D+ G+S+G V + +A+ A+
Sbjct: 250 GSTIFVANLDFKVGWKKLKEVFSIAGTVKRADIKEDKDGKSRGMGTVTFEQAIEAVQAIS 309
Query: 80 RYNNVQLDGKPMKIEI 95
+N L +PM +++
Sbjct: 310 MFNGQFLFDRPMHVKM 325
Score = 34 (17.0 bits), Expect = 2.0e-08, Sum P(2) = 2.0e-08
Identities = 7/24 (29%), Positives = 11/24 (45%)
Query: 96 IGTNIGPPAAVLPITNVMYGNEIG 119
IG +GP + T + G +G
Sbjct: 352 IGMGLGPGGQPISATQLSMGGGMG 375
>UNIPROTKB|Q83CD7 [details] [associations]
symbol:CBU_1183 "Glycine-rich RNA-binding protein"
species:227377 "Coxiella burnetii RSA 493" [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AE016828
GenomeReviews:AE016828_GR HOGENOM:HOG000276232 OMA:KRVHIPT
RefSeq:NP_820178.2 ProteinModelPortal:Q83CD7 PRIDE:Q83CD7
GeneID:1209086 KEGG:cbu:CBU_1183 PATRIC:17931107
ProtClustDB:CLSK914597 BioCyc:CBUR227377:GJ7S-1169-MONOMER
Uniprot:Q83CD7
Length = 117
Score = 128 (50.1 bits), Expect = 2.0e-08, P = 2.0e-08
Identities = 26/84 (30%), Positives = 47/84 (55%)
Query: 19 SGTKLYISNLEYGVSNEDIKELFSEVGELKRCSVHFDR-SGRSKGTAEVVLTRRADAIAA 77
S K+Y+ +L Y V+ ++++ F + GE++ + DR +GRSKG A + + A A
Sbjct: 16 SQNKIYVGSLSYDVTADELQSFFGQYGEIEEAKLIMDRETGRSKGFAFITYGTQDAAQEA 75
Query: 78 VKRYNNVQLDGKPMKIEIIGTNIG 101
V + N + L G+ +++ I N G
Sbjct: 76 VSKANGIDLQGRKIRVNIARENTG 99
>TIGR_CMR|CBU_1183 [details] [associations]
symbol:CBU_1183 "nucleic acid binding domain protein"
species:227377 "Coxiella burnetii RSA 493" [GO:0008150
"biological_process" evidence=ND] [GO:0003676 "nucleic acid
binding" evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AE016828
GenomeReviews:AE016828_GR HOGENOM:HOG000276232 OMA:KRVHIPT
RefSeq:NP_820178.2 ProteinModelPortal:Q83CD7 PRIDE:Q83CD7
GeneID:1209086 KEGG:cbu:CBU_1183 PATRIC:17931107
ProtClustDB:CLSK914597 BioCyc:CBUR227377:GJ7S-1169-MONOMER
Uniprot:Q83CD7
Length = 117
Score = 128 (50.1 bits), Expect = 2.0e-08, P = 2.0e-08
Identities = 26/84 (30%), Positives = 47/84 (55%)
Query: 19 SGTKLYISNLEYGVSNEDIKELFSEVGELKRCSVHFDR-SGRSKGTAEVVLTRRADAIAA 77
S K+Y+ +L Y V+ ++++ F + GE++ + DR +GRSKG A + + A A
Sbjct: 16 SQNKIYVGSLSYDVTADELQSFFGQYGEIEEAKLIMDRETGRSKGFAFITYGTQDAAQEA 75
Query: 78 VKRYNNVQLDGKPMKIEIIGTNIG 101
V + N + L G+ +++ I N G
Sbjct: 76 VSKANGIDLQGRKIRVNIARENTG 99
>UNIPROTKB|F1SJQ4 [details] [associations]
symbol:POLDIP3 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0045727 "positive regulation of translation"
evidence=IEA] [GO:0035145 "exon-exon junction complex"
evidence=IEA] [GO:0016607 "nuclear speck" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
GO:GO:0016607 Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0045727
GO:GO:0035145 OMA:QVPQQKA GeneTree:ENSGT00390000018868
EMBL:CU928642 Ensembl:ENSSSCT00000000041 Uniprot:F1SJQ4
Length = 338
Score = 133 (51.9 bits), Expect = 2.8e-08, P = 2.8e-08
Identities = 36/76 (47%), Positives = 45/76 (59%)
Query: 15 SSIESGTKLYISNLEYGVSNEDIKELFSEVGELKRCS-VHFDRSGRSKGTAEVVLTRRAD 73
S +E GTK+ ++NL V+ EDI ELF G LKR VH G AEVV ++ D
Sbjct: 254 SPLE-GTKMTVNNLHPRVTEEDIVELFCVCGALKRARLVH-------PGVAEVVFVKKDD 305
Query: 74 AIAAVKRYNNVQLDGK 89
AI A K+YNN LDG+
Sbjct: 306 AITAYKKYNNRCLDGE 321
>TAIR|locus:2077427 [details] [associations]
symbol:AT3G08000 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005634 "nucleus" evidence=ISM] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC013483 eggNOG:COG0724
HOGENOM:HOG000276232 HSSP:Q14103 UniGene:At.40270 UniGene:At.28103
EMBL:BT012118 EMBL:BT012373 IPI:IPI00520412 RefSeq:NP_187457.1
ProteinModelPortal:Q9SFB4 SMR:Q9SFB4 EnsemblPlants:AT3G08000.1
GeneID:819991 KEGG:ath:AT3G08000 TAIR:At3g08000 InParanoid:Q9SFB4
OMA:FCTSSSA PhylomeDB:Q9SFB4 ProtClustDB:CLSN2915579
Genevestigator:Q9SFB4 Uniprot:Q9SFB4
Length = 143
Score = 126 (49.4 bits), Expect = 3.3e-08, P = 3.3e-08
Identities = 30/95 (31%), Positives = 48/95 (50%)
Query: 14 SSSIESGTKLYISNLEYGVSNEDIKELFSEVGELKRCSVHFDR-SGRSKGTAEVVLTRRA 72
SSS +KL+I L + V + +K+ FS GE+ + +D+ SGRS+G V
Sbjct: 34 SSSASPSSKLFIGGLSWSVDEQSLKDAFSSFGEVAEVRIAYDKGSGRSRGFGFVDFAEEG 93
Query: 73 DAIAAVKRYNNVQLDGKPMKIEIIGTNI-GPPAAV 106
DA++A + L G+P++I + G P V
Sbjct: 94 DALSAKDAMDGKGLLGRPLRISFALERVRGGPVVV 128
>ASPGD|ASPL0000011897 [details] [associations]
symbol:AN3739 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0005829
"cytosol" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:BN001302
ProteinModelPortal:C8V7B0 EnsemblFungi:CADANIAT00004984
HOGENOM:HOG000217892 OMA:ERAEIQY Uniprot:C8V7B0
Length = 484
Score = 134 (52.2 bits), Expect = 4.2e-08, P = 4.2e-08
Identities = 23/83 (27%), Positives = 46/83 (55%)
Query: 14 SSSIESGTKLYISNLEYGVSNEDIKELFSEVGELKRCSVHFDRSGRSKGTAEVVLTRRAD 73
+S E +Y+ NL + N+D+ +LFS +G+++R + ++ +GRS+GT V
Sbjct: 374 TSGGEKSNTIYVRNLPWSTCNDDLVDLFSTIGKVERAEIQYEPNGRSRGTGVVQFDNADT 433
Query: 74 AIAAVKRYNNVQLDGKPMKIEII 96
A ++ ++ Q G+P+ I +
Sbjct: 434 AETSIAKFTGYQYGGRPLGITFV 456
Score = 128 (50.1 bits), Expect = 1.9e-07, P = 1.9e-07
Identities = 27/77 (35%), Positives = 44/77 (57%)
Query: 20 GTKLYISNLEYGVSNEDIKELFSEV---GELKRCSVHFDRSGRSKGTAEVVLTRRADAIA 76
G +LY+SNL + V +D+K+LF + G + R VH D SGR KG+ V DA
Sbjct: 221 GRQLYVSNLPFNVGWQDLKDLFRQAAQQGTVIRADVHTDASGRPKGSGIVAFESPDDARN 280
Query: 77 AVKRYNNVQLDGKPMKI 93
A++++N G+ +++
Sbjct: 281 AIQQFNGYDWQGRTLEV 297
>TAIR|locus:2075860 [details] [associations]
symbol:U11/U12-31K "U11/U12-31K" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=ISS] [GO:0005634 "nucleus"
evidence=ISM;IDA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0000398 "mRNA splicing, via spliceosome" evidence=IMP]
[GO:0032502 "developmental process" evidence=IMP] [GO:0051302
"regulation of cell division" evidence=IMP] InterPro:IPR000504
InterPro:IPR001878 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00098
PROSITE:PS50102 PROSITE:PS50158 SMART:SM00343 SMART:SM00360
GO:GO:0005634 EMBL:CP002686 GO:GO:0000166 GO:GO:0046872
GO:GO:0008270 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC011560
GO:GO:0030529 Gene3D:4.10.60.10 GO:GO:0000398 GO:GO:0032502
GO:GO:0051302 HSSP:O08583 KO:K13154 OMA:YRYSSVA EMBL:BT015938
EMBL:BT021922 IPI:IPI00529628 RefSeq:NP_187651.1 UniGene:At.39936
ProteinModelPortal:Q9CAE4 SMR:Q9CAE4 STRING:Q9CAE4
EnsemblPlants:AT3G10400.1 GeneID:820203 KEGG:ath:AT3G10400
TAIR:At3g10400 InParanoid:Q9CAE4 PhylomeDB:Q9CAE4
ProtClustDB:CLSN2684009 Genevestigator:Q9CAE4 Uniprot:Q9CAE4
Length = 261
Score = 127 (49.8 bits), Expect = 6.8e-08, P = 6.8e-08
Identities = 30/82 (36%), Positives = 47/82 (57%)
Query: 19 SGTKLYISNLEYGVSNEDIKELFSEVGELKRCSVHFDRSGR-SKGTAEVVLTRRADAIAA 77
S + LY+SNL++ ++N DI LFS G++ R +V DR R S+G A V+ R DA A
Sbjct: 55 SKSTLYVSNLDFSLTNSDIHTLFSTFGKVARVTVLKDRHTRQSRGVAFVLYVSREDAAKA 114
Query: 78 VKRYNNVQLDGKPMKIEIIGTN 99
+ + L+G+ + + I N
Sbjct: 115 ARSMDAKILNGRKLTVSIAADN 136
>WB|WBGene00001368 [details] [associations]
symbol:exc-7 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0002064 "epithelial cell development"
evidence=IMP] [GO:0035150 "regulation of tube size" evidence=IMP]
[GO:0016607 "nuclear speck" evidence=IDA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 GO:GO:0016607 Gene3D:3.30.70.330 GO:GO:0003723
GO:GO:0002064 eggNOG:COG0724 HOGENOM:HOG000231162
TIGRFAMs:TIGR01661 HSSP:P26378 GeneTree:ENSGT00560000077064
OMA:DIGESKT GO:GO:0035150 EMBL:Z36752 PIR:T21822 RefSeq:NP_496057.1
ProteinModelPortal:Q20084 SMR:Q20084 DIP:DIP-27011N IntAct:Q20084
MINT:MINT-1038844 STRING:Q20084 PaxDb:Q20084 EnsemblMetazoa:F35H8.5
GeneID:174506 KEGG:cel:CELE_F35H8.5 CTD:174506 WormBase:F35H8.5
InParanoid:Q20084 NextBio:884320 Uniprot:Q20084
Length = 456
Score = 131 (51.2 bits), Expect = 8.1e-08, P = 8.1e-08
Identities = 27/77 (35%), Positives = 47/77 (61%)
Query: 18 ESGTKLYISNLEYGVSNEDIKELFSEVGELKRCSVHFDR-SGRSKGTAEVVLTRRADAIA 76
ES T L I+ L G++ E+++ LF+ +GE++ C + D+ +G+S G V R DA+
Sbjct: 39 ESKTNLIINYLPQGMTQEEVRSLFTSIGEIESCKLVRDKVTGQSLGYGFVNYVREEDALR 98
Query: 77 AVKRYNNVQLDGKPMKI 93
AV +N ++L K +K+
Sbjct: 99 AVSSFNGLRLQNKTIKV 115
>UNIPROTKB|Q60A61 [details] [associations]
symbol:MCA1010 "RNA-binding protein" species:243233
"Methylococcus capsulatus str. Bath" [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AE017282
GenomeReviews:AE017282_GR HOGENOM:HOG000276232 RefSeq:YP_113486.1
ProteinModelPortal:Q60A61 GeneID:3102652 KEGG:mca:MCA1010
PATRIC:22605822 OMA:LAFHSTE Uniprot:Q60A61
Length = 95
Score = 122 (48.0 bits), Expect = 8.7e-08, P = 8.7e-08
Identities = 26/75 (34%), Positives = 43/75 (57%)
Query: 20 GTKLYISNLEYGVSNEDIKELFSEVGELKRCSVHFDRS-GRSKGTAEVVLTRRADAIAAV 78
G+KLY+ NL Y V + D++ F+ G +K V DR+ GRS+G V + +A AA+
Sbjct: 2 GSKLYVGNLNYRVGDADLERTFAAYGTVKSAQVVMDRATGRSRGFGFVEMGSDQEAQAAI 61
Query: 79 KRYNNVQLDGKPMKI 93
N ++DG+ + +
Sbjct: 62 AGLNGKEMDGRNLMV 76
>UNIPROTKB|H0YN19 [details] [associations]
symbol:MYEF2 "Myelin expression factor 2" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC066612
EMBL:AC090526 HGNC:HGNC:17940 Ensembl:ENST00000558395
Uniprot:H0YN19
Length = 290
Score = 127 (49.8 bits), Expect = 9.0e-08, P = 9.0e-08
Identities = 22/76 (28%), Positives = 46/76 (60%)
Query: 20 GTKLYISNLEYGVSNEDIKELFSEVGELKRCSVHFDRSGRSKGTAEVVLTRRADAIAAVK 79
G+ ++++NL++ V + +KE+FS G +KR + D+ G+S+G V + +A+ A+
Sbjct: 13 GSTIFVANLDFKVGWKKLKEVFSIAGTVKRADIKEDKDGKSRGMGTVTFEQAIEAVQAIS 72
Query: 80 RYNNVQLDGKPMKIEI 95
+N L +PM +++
Sbjct: 73 MFNGQFLFDRPMHVKM 88
>TAIR|locus:2058573 [details] [associations]
symbol:PAB4 "AT2G23350" species:3702 "Arabidopsis
thaliana" [GO:0003723 "RNA binding" evidence=ISS] [GO:0003743
"translation initiation factor activity" evidence=ISS] [GO:0046686
"response to cadmium ion" evidence=IEP] [GO:0005829 "cytosol"
evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0005829
GO:GO:0046686 EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 EMBL:AC002391 eggNOG:COG0724
KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
HOGENOM:HOG000217922 HSSP:P11940 OMA:MIRITYS EMBL:AY050859
EMBL:AY079389 IPI:IPI00530940 PIR:T00497 RefSeq:NP_179916.1
UniGene:At.25439 ProteinModelPortal:O22173 SMR:O22173 IntAct:O22173
STRING:O22173 PaxDb:O22173 PRIDE:O22173 ProMEX:O22173
EnsemblPlants:AT2G23350.1 GeneID:816867 KEGG:ath:AT2G23350
TAIR:At2g23350 InParanoid:O22173 PhylomeDB:O22173
ProtClustDB:CLSN2913301 Genevestigator:O22173 Uniprot:O22173
Length = 662
Score = 132 (51.5 bits), Expect = 1.1e-07, P = 1.1e-07
Identities = 26/76 (34%), Positives = 43/76 (56%)
Query: 20 GTKLYISNLEYGVSNEDIKELFSEVGELKRCSVHFDRSGRSKGTAEVVLTRRADAIAAVK 79
G LY+ NL+ V++E ++ELF+E G + C V D SG SKG+ V + ++A +
Sbjct: 327 GLNLYVKNLDDTVTDEKLRELFAEFGTITSCKVMRDPSGTSKGSGFVAFSAASEASRVLN 386
Query: 80 RYNNVQLDGKPMKIEI 95
N + GKP+ + +
Sbjct: 387 EMNGKMVGGKPLYVAL 402
>UNIPROTKB|G4MKS1 [details] [associations]
symbol:MGG_06668 "Uncharacterized protein" species:242507
"Magnaporthe oryzae 70-15" [GO:0005575 "cellular_component"
evidence=ND] [GO:0008150 "biological_process" evidence=ND]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:CM001231 KO:K12881 RefSeq:XP_003709373.1
ProteinModelPortal:G4MKS1 EnsemblFungi:MGG_06668T0 GeneID:2684841
KEGG:mgr:MGG_06668 Uniprot:G4MKS1
Length = 258
Score = 124 (48.7 bits), Expect = 1.4e-07, P = 1.4e-07
Identities = 27/85 (31%), Positives = 44/85 (51%)
Query: 13 RSSSIESGTKLYISNLEYGVSNEDIKELFSE-VGELKRCSVHFDRSGRSKGTAEVVLTRR 71
++S +K+ +SN+ VS IKE F + VG +KR + + G S+G A V
Sbjct: 62 KASGAPGTSKVVVSNMPKDVSEAQIKEYFGQSVGPVKRVEISYGPGGVSRGIATVTFAHA 121
Query: 72 ADAIAAVKRYNNVQLDGKPMKIEII 96
A A N + +D KP+K+E++
Sbjct: 122 DGASKAFAELNGLLIDNKPVKVEVV 146
>UNIPROTKB|F1LSJ5 [details] [associations]
symbol:Hnrpm "Protein Hnrpm" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0000398 "mRNA splicing, via spliceosome" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 InterPro:IPR024667 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
GO:GO:0000398 PANTHER:PTHR23003:SF6 IPI:IPI00559961
ProteinModelPortal:F1LSJ5 Ensembl:ENSRNOT00000043570 Uniprot:F1LSJ5
Length = 242
Score = 122 (48.0 bits), Expect = 2.0e-07, P = 2.0e-07
Identities = 22/76 (28%), Positives = 45/76 (59%)
Query: 20 GTKLYISNLEYGVSNEDIKELFSEVGELKRCSVHFDRSGRSKGTAEVVLTRRADAIAAVK 79
G+ ++++NL+Y V + +KE+FS G + R + D+ G+S+G V + +A+ A+
Sbjct: 18 GSTVFVANLDYKVGWKKLKEVFSMAGVVVRADILEDKDGKSRGIGTVTFEQSIEAVQAIS 77
Query: 80 RYNNVQLDGKPMKIEI 95
+N L +PM +++
Sbjct: 78 MFNGQLLFDRPMHVKM 93
>UNIPROTKB|F1PIN4 [details] [associations]
symbol:MYEF2 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00410000025635 EMBL:AAEX03016110
Ensembl:ENSCAFT00000022252 Uniprot:F1PIN4
Length = 437
Score = 127 (49.8 bits), Expect = 2.0e-07, P = 2.0e-07
Identities = 22/76 (28%), Positives = 46/76 (60%)
Query: 20 GTKLYISNLEYGVSNEDIKELFSEVGELKRCSVHFDRSGRSKGTAEVVLTRRADAIAAVK 79
G+ ++++NL++ V + +KE+FS G +KR + D+ G+S+G V + +A+ A+
Sbjct: 72 GSTIFVANLDFKVGWKKLKEVFSIAGTVKRADIKEDKDGKSRGMGTVTFEQAIEAVQAIS 131
Query: 80 RYNNVQLDGKPMKIEI 95
+N L +PM +++
Sbjct: 132 MFNGQFLFDRPMHVKM 147
>POMBASE|SPAC328.05 [details] [associations]
symbol:SPAC328.05 "RNA-binding protein involved in export
of mRNAs (predicted)" species:4896 "Schizosaccharomyces pombe"
[GO:0003723 "RNA binding" evidence=ISO] [GO:0005634 "nucleus"
evidence=ISO;IDA] [GO:0005737 "cytoplasm" evidence=ISO] [GO:0005829
"cytosol" evidence=IDA] [GO:0016973 "poly(A)+ mRNA export from
nucleus" evidence=ISO] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 PomBase:SPAC328.05
GO:GO:0005829 GO:GO:0005634 EMBL:CU329670 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 eggNOG:COG0724 GO:GO:0016973
OrthoDB:EOG4F21C2 RefSeq:NP_594207.3 HSSP:Q9D0B0
EnsemblFungi:SPAC328.05.1 GeneID:2542567 NextBio:20803618
Uniprot:Q9P3U1
Length = 464
Score = 127 (49.8 bits), Expect = 2.2e-07, P = 2.2e-07
Identities = 22/78 (28%), Positives = 46/78 (58%)
Query: 18 ESGTKLYISNLEYGVSNEDIKELFSEVGELKRCSVHFDRSGRSKGTAEVVLTRRADAIAA 77
E +L++ NL Y V +D+K+LF + G + R + ++ GRS+G VV++ +A+ A
Sbjct: 176 EPDRQLFVGNLPYNVRWQDLKDLFRQAGSVIRADIQMNQEGRSRGIGIVVMSSMKEAMHA 235
Query: 78 VKRYNNVQLDGKPMKIEI 95
++ +N G+ +++ +
Sbjct: 236 IQMLHNTDFMGRTLEVRL 253
Score = 121 (47.7 bits), Expect = 1.0e-06, P = 1.0e-06
Identities = 19/71 (26%), Positives = 44/71 (61%)
Query: 23 LYISNLEYGVSNEDIKELFSEVGELKRCSVHFDRSGRSKGTAEVVLTRRADAIAAVKRYN 82
+Y+ NL + S+ ++ +LF+++G + R + ++ +GRSKG V DA +++++ N
Sbjct: 312 IYVGNLPWATSDRNLLDLFTDIGSVIRARIAYEPTGRSKGFGVVQFENENDAASSIEKLN 371
Query: 83 NVQLDGKPMKI 93
+ G+P+++
Sbjct: 372 GYRYGGRPLQL 382
>UNIPROTKB|F1PIL7 [details] [associations]
symbol:MYEF2 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00410000025635 OMA:HEEYRSH EMBL:AAEX03016110
Ensembl:ENSCAFT00000022263 Uniprot:F1PIL7
Length = 492
Score = 127 (49.8 bits), Expect = 2.5e-07, P = 2.5e-07
Identities = 22/76 (28%), Positives = 46/76 (60%)
Query: 20 GTKLYISNLEYGVSNEDIKELFSEVGELKRCSVHFDRSGRSKGTAEVVLTRRADAIAAVK 79
G+ ++++NL++ V + +KE+FS G +KR + D+ G+S+G V + +A+ A+
Sbjct: 181 GSTIFVANLDFKVGWKKLKEVFSIAGTVKRADIKEDKDGKSRGMGTVTFEQAIEAVQAIS 240
Query: 80 RYNNVQLDGKPMKIEI 95
+N L +PM +++
Sbjct: 241 MFNGQFLFDRPMHVKM 256
>UNIPROTKB|F1SN63 [details] [associations]
symbol:MYEF2 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0030182 "neuron differentiation" evidence=IEA]
[GO:0014902 "myotube differentiation" evidence=IEA] [GO:0005794
"Golgi apparatus" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0005794 GO:GO:0030182 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0014902
GeneTree:ENSGT00410000025635 OMA:HEEYRSH EMBL:CU326370
EMBL:CU407256 Ensembl:ENSSSCT00000005147 Uniprot:F1SN63
Length = 533
Score = 127 (49.8 bits), Expect = 2.8e-07, P = 2.8e-07
Identities = 22/76 (28%), Positives = 46/76 (60%)
Query: 20 GTKLYISNLEYGVSNEDIKELFSEVGELKRCSVHFDRSGRSKGTAEVVLTRRADAIAAVK 79
G+ ++++NL++ V + +KE+FS G +KR + D+ G+S+G V + +A+ A+
Sbjct: 179 GSTIFVANLDFKVGWKKLKEVFSIAGTVKRADIKEDKDGKSRGMGTVTFEQAIEAVQAIS 238
Query: 80 RYNNVQLDGKPMKIEI 95
+N L +PM +++
Sbjct: 239 MFNGQFLFDRPMHVKM 254
>UNIPROTKB|A6QQP0 [details] [associations]
symbol:MYEF2 "MYEF2 protein" species:9913 "Bos taurus"
[GO:0030182 "neuron differentiation" evidence=IEA] [GO:0014902
"myotube differentiation" evidence=IEA] [GO:0005794 "Golgi
apparatus" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0005794 GO:GO:0030182 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0014902 eggNOG:COG0724
GeneTree:ENSGT00410000025635 HOGENOM:HOG000231932
HOVERGEN:HBG054880 CTD:50804 OMA:HEEYRSH EMBL:DAAA02029125
EMBL:DAAA02029126 EMBL:BC149929 IPI:IPI00867158
RefSeq:NP_001095555.1 UniGene:Bt.99087 SMR:A6QQP0
Ensembl:ENSBTAT00000055253 GeneID:524920 KEGG:bta:524920
NextBio:20874060 Uniprot:A6QQP0
Length = 543
Score = 127 (49.8 bits), Expect = 2.9e-07, P = 2.9e-07
Identities = 22/76 (28%), Positives = 46/76 (60%)
Query: 20 GTKLYISNLEYGVSNEDIKELFSEVGELKRCSVHFDRSGRSKGTAEVVLTRRADAIAAVK 79
G+ ++++NL++ V + +KE+FS G +KR + D+ G+S+G V + +A+ A+
Sbjct: 232 GSTIFVANLDFKVGWKKLKEVFSIAGTVKRADIKEDKDGKSRGMGTVTFEQAIEAVQAIS 291
Query: 80 RYNNVQLDGKPMKIEI 95
+N L +PM +++
Sbjct: 292 MFNGQFLFDRPMHVKM 307
>UNIPROTKB|D4AB08 [details] [associations]
symbol:Myef2 "Protein Myef2" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:1306547 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
IPI:IPI00780020 ProteinModelPortal:D4AB08
Ensembl:ENSRNOT00000007097 ArrayExpress:D4AB08 Uniprot:D4AB08
Length = 567
Score = 127 (49.8 bits), Expect = 3.0e-07, P = 3.0e-07
Identities = 22/76 (28%), Positives = 46/76 (60%)
Query: 20 GTKLYISNLEYGVSNEDIKELFSEVGELKRCSVHFDRSGRSKGTAEVVLTRRADAIAAVK 79
G+ ++++NL++ V + +KE+FS G +KR + D+ G+S+G V + +A+ A+
Sbjct: 223 GSTIFVANLDFKVGWKKLKEVFSIAGTVKRADIKEDKDGKSRGMGTVTFEQAIEAVQAIS 282
Query: 80 RYNNVQLDGKPMKIEI 95
+N L +PM +++
Sbjct: 283 MFNGQFLFDRPMHVKM 298
>UNIPROTKB|D4A1T2 [details] [associations]
symbol:Myef2 "Protein Myef2" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0005794 "Golgi apparatus" evidence=IEA]
[GO:0014902 "myotube differentiation" evidence=IEA] [GO:0030182
"neuron differentiation" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:1306547 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
IPI:IPI00357916 ProteinModelPortal:D4A1T2
Ensembl:ENSRNOT00000056055 ArrayExpress:D4A1T2 Uniprot:D4A1T2
Length = 574
Score = 127 (49.8 bits), Expect = 3.1e-07, P = 3.1e-07
Identities = 22/76 (28%), Positives = 46/76 (60%)
Query: 20 GTKLYISNLEYGVSNEDIKELFSEVGELKRCSVHFDRSGRSKGTAEVVLTRRADAIAAVK 79
G+ ++++NL++ V + +KE+FS G +KR + D+ G+S+G V + +A+ A+
Sbjct: 223 GSTIFVANLDFKVGWKKLKEVFSIAGTVKRADIKEDKDGKSRGMGTVTFEQAIEAVQAIS 282
Query: 80 RYNNVQLDGKPMKIEI 95
+N L +PM +++
Sbjct: 283 MFNGQFLFDRPMHVKM 298
>RGD|1306547 [details] [associations]
symbol:Myef2 "myelin expression factor 2" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA;ISO] [GO:0005794 "Golgi apparatus"
evidence=IEA;ISO] [GO:0014902 "myotube differentiation"
evidence=IEA;ISO] [GO:0030182 "neuron differentiation"
evidence=IEA;ISO] [GO:0005730 "nucleolus" evidence=ISO]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 RGD:1306547 GO:GO:0005634 GO:GO:0005794 GO:GO:0030182
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0014902
GeneTree:ENSGT00410000025635 CTD:50804 OMA:HEEYRSH
OrthoDB:EOG4VDPZN IPI:IPI00209446 RefSeq:NP_001013223.2
UniGene:Rn.1269 ProteinModelPortal:D4AEI5
Ensembl:ENSRNOT00000007103 GeneID:679712 KEGG:rno:679712
UCSC:RGD:1306547 NextBio:717095 ArrayExpress:D4AEI5 Uniprot:D4AEI5
Length = 591
Score = 127 (49.8 bits), Expect = 3.2e-07, P = 3.2e-07
Identities = 22/76 (28%), Positives = 46/76 (60%)
Query: 20 GTKLYISNLEYGVSNEDIKELFSEVGELKRCSVHFDRSGRSKGTAEVVLTRRADAIAAVK 79
G+ ++++NL++ V + +KE+FS G +KR + D+ G+S+G V + +A+ A+
Sbjct: 223 GSTIFVANLDFKVGWKKLKEVFSIAGTVKRADIKEDKDGKSRGMGTVTFEQAIEAVQAIS 282
Query: 80 RYNNVQLDGKPMKIEI 95
+N L +PM +++
Sbjct: 283 MFNGQFLFDRPMHVKM 298
>UNIPROTKB|Q9P2K5 [details] [associations]
symbol:MYEF2 "Myelin expression factor 2" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0005634 "nucleus" evidence=IDA] [GO:0014902
"myotube differentiation" evidence=IEP] [GO:0030182 "neuron
differentiation" evidence=IEP] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0005794 "Golgi apparatus" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005794 GO:GO:0030182
GO:GO:0000166 GO:GO:0003677 Gene3D:3.30.70.330 GO:GO:0006351
GO:GO:0003723 GO:GO:0014902 eggNOG:COG0724 EMBL:AC066612
HOVERGEN:HBG054880 EMBL:AB037762 EMBL:AK002075 EMBL:AK023133
EMBL:AC090526 EMBL:BC014533 EMBL:BC068523 EMBL:BC152420
EMBL:BC152451 EMBL:AF190159 IPI:IPI00292940 IPI:IPI00386418
IPI:IPI00555833 IPI:IPI00555987 RefSeq:NP_057216.2 UniGene:Hs.6638
ProteinModelPortal:Q9P2K5 SMR:Q9P2K5 STRING:Q9P2K5
PhosphoSite:Q9P2K5 DMDM:296439294 PaxDb:Q9P2K5 PRIDE:Q9P2K5
DNASU:50804 Ensembl:ENST00000267836 Ensembl:ENST00000324324
Ensembl:ENST00000561151 Ensembl:ENST00000561351 GeneID:50804
KEGG:hsa:50804 UCSC:uc001zwg.4 UCSC:uc001zwi.4 UCSC:uc001zwj.4
CTD:50804 GeneCards:GC15M048434 HGNC:HGNC:17940 HPA:HPA004883
neXtProt:NX_Q9P2K5 PharmGKB:PA134877084 InParanoid:Q9P2K5
OMA:HEEYRSH OrthoDB:EOG4VDPZN GenomeRNAi:50804 NextBio:53234
ArrayExpress:Q9P2K5 Bgee:Q9P2K5 CleanEx:HS_MYEF2
Genevestigator:Q9P2K5 GermOnline:ENSG00000104177 Uniprot:Q9P2K5
Length = 600
Score = 127 (49.8 bits), Expect = 3.3e-07, P = 3.3e-07
Identities = 22/76 (28%), Positives = 46/76 (60%)
Query: 20 GTKLYISNLEYGVSNEDIKELFSEVGELKRCSVHFDRSGRSKGTAEVVLTRRADAIAAVK 79
G+ ++++NL++ V + +KE+FS G +KR + D+ G+S+G V + +A+ A+
Sbjct: 232 GSTIFVANLDFKVGWKKLKEVFSIAGTVKRADIKEDKDGKSRGMGTVTFEQAIEAVQAIS 291
Query: 80 RYNNVQLDGKPMKIEI 95
+N L +PM +++
Sbjct: 292 MFNGQFLFDRPMHVKM 307
>UNIPROTKB|F1PIK6 [details] [associations]
symbol:MYEF2 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0030182 "neuron differentiation"
evidence=IEA] [GO:0014902 "myotube differentiation" evidence=IEA]
[GO:0005794 "Golgi apparatus" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0005794 GO:GO:0030182 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0014902
GeneTree:ENSGT00410000025635 EMBL:AAEX03016110
Ensembl:ENSCAFT00000022267 Uniprot:F1PIK6
Length = 611
Score = 127 (49.8 bits), Expect = 3.4e-07, P = 3.4e-07
Identities = 22/76 (28%), Positives = 46/76 (60%)
Query: 20 GTKLYISNLEYGVSNEDIKELFSEVGELKRCSVHFDRSGRSKGTAEVVLTRRADAIAAVK 79
G+ ++++NL++ V + +KE+FS G +KR + D+ G+S+G V + +A+ A+
Sbjct: 131 GSTIFVANLDFKVGWKKLKEVFSIAGTVKRADIKEDKDGKSRGMGTVTFEQAIEAVQAIS 190
Query: 80 RYNNVQLDGKPMKIEI 95
+N L +PM +++
Sbjct: 191 MFNGQFLFDRPMHVKM 206
>SGD|S000000517 [details] [associations]
symbol:GBP2 "Poly(A+) RNA-binding protein" species:4932
"Saccharomyces cerevisiae" [GO:0000781 "chromosome, telomeric
region" evidence=IEA] [GO:0042162 "telomeric DNA binding"
evidence=IMP;IPI] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA;IDA] [GO:0005634 "nucleus"
evidence=IEA;IDA;IPI] [GO:0005694 "chromosome" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0016973 "poly(A)+ mRNA export from
nucleus" evidence=IGI;IPI] [GO:0000723 "telomere maintenance"
evidence=IGI;IMP;IDA] [GO:0010494 "cytoplasmic stress granule"
evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 SGD:S000000517 GO:GO:0005634
GO:GO:0000166 Gene3D:3.30.70.330 EMBL:X59720 EMBL:BK006937
GO:GO:0003723 GO:GO:0000781 GO:GO:0000723 GO:GO:0042162
GO:GO:0010494 eggNOG:COG0724 GO:GO:0016973 EMBL:AY692807 PIR:S19338
RefSeq:NP_009916.1 ProteinModelPortal:P25555 SMR:P25555
DIP:DIP-2735N IntAct:P25555 MINT:MINT-481140 STRING:P25555
PaxDb:P25555 PeptideAtlas:P25555 EnsemblFungi:YCL011C GeneID:850346
KEGG:sce:YCL011C CYGD:YCL011c GeneTree:ENSGT00410000025635
HOGENOM:HOG000111155 OMA:ATHENTE OrthoDB:EOG4F21C2 NextBio:965800
Genevestigator:P25555 GermOnline:YCL011C Uniprot:P25555
Length = 427
Score = 124 (48.7 bits), Expect = 4.1e-07, P = 4.1e-07
Identities = 21/77 (27%), Positives = 47/77 (61%)
Query: 17 IESGTKLYISNLEYGVSNEDIKELFSEVGELKRCSVHFDRSGRSKGTAEVVLTRRADAIA 76
I++G +++I NL Y ++ + +K++F E G + R V D +G S+G V+ + I
Sbjct: 215 IDNGFEVFIINLPYSMNWQSLKDMFKECGHVLRADVELDFNGFSRGFGSVIYPTEDEMIR 274
Query: 77 AVKRYNNVQLDGKPMKI 93
A+ +N ++++G+ +++
Sbjct: 275 AIDTFNGMEVEGRVLEV 291
>UNIPROTKB|Q7ZYE9 [details] [associations]
symbol:hnrnpab "Hnrpab-prov protein" species:8355 "Xenopus
laevis" [GO:0005515 "protein binding" evidence=IPI]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
HOVERGEN:HBG002295 HSSP:Q14103 KO:K13044 InterPro:IPR012956
Pfam:PF08143 CTD:3182 EMBL:BC043814 RefSeq:NP_001080489.1
UniGene:Xl.45404 ProteinModelPortal:Q7ZYE9 SMR:Q7ZYE9 IntAct:Q7ZYE9
GeneID:380181 KEGG:xla:380181 Xenbase:XB-GENE-6043063
Uniprot:Q7ZYE9
Length = 324
Score = 121 (47.7 bits), Expect = 5.3e-07, P = 5.3e-07
Identities = 23/77 (29%), Positives = 46/77 (59%)
Query: 14 SSSIESGTKLYISNLEYGVSNEDIKELFSEVGELKRCSVHFD-RSGRSKGTAEVVLTRRA 72
SS + G K+++ L + S +D+K+ F++ GE+ C++ D +GRS+G +L + A
Sbjct: 57 SSPLTEGVKMFVGGLSWDTSKKDLKDYFAKFGEVSDCTIKMDPNTGRSRGFG-FILFKDA 115
Query: 73 DAIAAVKRYNNVQLDGK 89
+++ V + +LDG+
Sbjct: 116 ESVDKVLEHKEHRLDGR 132
>UNIPROTKB|B4DQI6 [details] [associations]
symbol:TRA2A "cDNA FLJ50614, highly similar to
Transformer-2 protein homolog" species:9606 "Homo sapiens"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 HOVERGEN:HBG107480 IPI:IPI00220447
UniGene:Hs.445652 HGNC:HGNC:16645 ChiTaRS:TRA2A EMBL:AC023105
EMBL:AK298815 SMR:B4DQI6 STRING:B4DQI6 Ensembl:ENST00000392502
Uniprot:B4DQI6
Length = 180
Score = 114 (45.2 bits), Expect = 6.1e-07, P = 6.1e-07
Identities = 26/78 (33%), Positives = 46/78 (58%)
Query: 18 ESGTKLYISNLEYGVSNEDIKELFSEVGELKRCSVHFD-RSGRSKGTAEVVLTRRADAIA 76
+ T L + L + D++E+FS G L +V +D R+GRS+G A V R D+
Sbjct: 15 DPNTCLGVFGLSLYTTERDLREVFSRYGPLSGVNVVYDQRTGRSRGFAFVYFERIDDSKE 74
Query: 77 AVKRYNNVQLDGKPMKIE 94
A++R N ++LDG+ ++++
Sbjct: 75 AMERANGMELDGRRIRVD 92
>UNIPROTKB|B4DUA9 [details] [associations]
symbol:TRA2A "Transformer-2 protein homolog alpha"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
HOVERGEN:HBG107480 UniGene:Hs.445652 HGNC:HGNC:16645 ChiTaRS:TRA2A
EMBL:AC023105 EMBL:AK300565 EMBL:AK300741 IPI:IPI01014274
SMR:B4DUA9 STRING:B4DUA9 Ensembl:ENST00000538367 Uniprot:B4DUA9
Length = 181
Score = 114 (45.2 bits), Expect = 6.1e-07, P = 6.1e-07
Identities = 26/78 (33%), Positives = 46/78 (58%)
Query: 18 ESGTKLYISNLEYGVSNEDIKELFSEVGELKRCSVHFD-RSGRSKGTAEVVLTRRADAIA 76
+ T L + L + D++E+FS G L +V +D R+GRS+G A V R D+
Sbjct: 15 DPNTCLGVFGLSLYTTERDLREVFSRYGPLSGVNVVYDQRTGRSRGFAFVYFERIDDSKE 74
Query: 77 AVKRYNNVQLDGKPMKIE 94
A++R N ++LDG+ ++++
Sbjct: 75 AMERANGMELDGRRIRVD 92
>WB|WBGene00011156 [details] [associations]
symbol:R09B3.3 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0009792
"embryo development ending in birth or egg hatching" evidence=IMP]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0009792 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 eggNOG:COG0724 HOGENOM:HOG000276232
GeneTree:ENSGT00550000074641 EMBL:Z81108 HSSP:P33240 PIR:T24068
RefSeq:NP_493023.1 ProteinModelPortal:O45713 SMR:O45713
IntAct:O45713 STRING:O45713 PaxDb:O45713 EnsemblMetazoa:R09B3.3
GeneID:173071 KEGG:cel:CELE_R09B3.3 UCSC:R09B3.3 CTD:173071
WormBase:R09B3.3 InParanoid:O45713 OMA:KRVHIPT NextBio:878159
Uniprot:O45713
Length = 85
Score = 114 (45.2 bits), Expect = 6.1e-07, P = 6.1e-07
Identities = 23/78 (29%), Positives = 42/78 (53%)
Query: 19 SGTKLYISNLEYGVSNEDIKELFSEVGELKRCSVHFDR-SGRSKGTAEVVLTRRADAIAA 77
SG +Y+ N + + +D+ FS+ G + + DR +GR +G A V T A A A
Sbjct: 2 SGFSVYVGNAPFQTTEDDLGNYFSQAGNVSNVRIVCDRETGRPRGFAFVEFTEEAAAQRA 61
Query: 78 VKRYNNVQLDGKPMKIEI 95
V ++N V +G+ +++ +
Sbjct: 62 VDQFNGVDFNGRALRVNL 79
>UNIPROTKB|O45713 [details] [associations]
symbol:R09B3.3 "Protein R09B3.3" species:6239
"Caenorhabditis elegans" [GO:0005515 "protein binding"
evidence=IPI] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0009792 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724
HOGENOM:HOG000276232 GeneTree:ENSGT00550000074641 EMBL:Z81108
HSSP:P33240 PIR:T24068 RefSeq:NP_493023.1 ProteinModelPortal:O45713
SMR:O45713 IntAct:O45713 STRING:O45713 PaxDb:O45713
EnsemblMetazoa:R09B3.3 GeneID:173071 KEGG:cel:CELE_R09B3.3
UCSC:R09B3.3 CTD:173071 WormBase:R09B3.3 InParanoid:O45713
OMA:KRVHIPT NextBio:878159 Uniprot:O45713
Length = 85
Score = 114 (45.2 bits), Expect = 6.1e-07, P = 6.1e-07
Identities = 23/78 (29%), Positives = 42/78 (53%)
Query: 19 SGTKLYISNLEYGVSNEDIKELFSEVGELKRCSVHFDR-SGRSKGTAEVVLTRRADAIAA 77
SG +Y+ N + + +D+ FS+ G + + DR +GR +G A V T A A A
Sbjct: 2 SGFSVYVGNAPFQTTEDDLGNYFSQAGNVSNVRIVCDRETGRPRGFAFVEFTEEAAAQRA 61
Query: 78 VKRYNNVQLDGKPMKIEI 95
V ++N V +G+ +++ +
Sbjct: 62 VDQFNGVDFNGRALRVNL 79
>UNIPROTKB|F1NS10 [details] [associations]
symbol:HNRNPM "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0000398 "mRNA splicing, via spliceosome" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 InterPro:IPR024667 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
GO:GO:0000398 GeneTree:ENSGT00410000025635 InterPro:IPR024666
PANTHER:PTHR23003:SF6 Pfam:PF11532 EMBL:AADN02063494
EMBL:AADN02063495 EMBL:AADN02063496 IPI:IPI00599569
Ensembl:ENSGALT00000000512 ArrayExpress:F1NS10 Uniprot:F1NS10
Length = 559
Score = 123 (48.4 bits), Expect = 8.0e-07, P = 8.0e-07
Identities = 22/76 (28%), Positives = 45/76 (59%)
Query: 20 GTKLYISNLEYGVSNEDIKELFSEVGELKRCSVHFDRSGRSKGTAEVVLTRRADAIAAVK 79
G+ ++++NL+Y V + +KE+FS G + R + D+ G+S+G V + +A+ A+
Sbjct: 192 GSTVFVANLDYKVGWKKLKEVFSMAGAVVRADILEDKDGKSRGIGTVTFEQAIEAVQAIS 251
Query: 80 RYNNVQLDGKPMKIEI 95
+N L +PM +++
Sbjct: 252 MFNGQLLFDRPMHVKM 267
>TAIR|locus:2009036 [details] [associations]
symbol:PAB1 "poly(A) binding protein 1" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=ISS] [GO:0003743 "translation
initiation factor activity" evidence=ISS] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002684 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
KO:K13126 IPI:IPI00540782 RefSeq:NP_174676.2 UniGene:At.51928
ProteinModelPortal:F4HT49 SMR:F4HT49 PRIDE:F4HT49
EnsemblPlants:AT1G34140.1 GeneID:840313 KEGG:ath:AT1G34140
OMA:VLSIRIC ArrayExpress:F4HT49 Uniprot:F4HT49
Length = 407
Score = 121 (47.7 bits), Expect = 8.1e-07, P = 8.1e-07
Identities = 26/83 (31%), Positives = 40/83 (48%)
Query: 13 RSSSIESGTKLYISNLEYGVSNEDIKELFSEVGELKRCSVHFDRSGRSKGTAEVVLTRRA 72
R G LY+ NL+ V N ++ELFSE G + C V +G SKG V +
Sbjct: 215 RDMKTRKGMNLYVKNLDDSVDNTKLEELFSEFGTITSCKVMVHSNGISKGVGFVEFSTSE 274
Query: 73 DAIAAVKRYNNVQLDGKPMKIEI 95
+A A+ + N + KP+ + +
Sbjct: 275 EASKAMLKMNGKMVGNKPIYVSL 297
>UNIPROTKB|J9NZ20 [details] [associations]
symbol:ZCRB1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR001878 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00098
PROSITE:PS50102 PROSITE:PS50158 SMART:SM00343 SMART:SM00360
GO:GO:0000166 GO:GO:0046872 GO:GO:0008270 Gene3D:3.30.70.330
GO:GO:0003676 Gene3D:4.10.60.10 GeneTree:ENSGT00600000084414
CTD:85437 KO:K13154 OMA:RXVTIMK EMBL:AAEX03015129
RefSeq:XP_534835.1 ProteinModelPortal:J9NZ20
Ensembl:ENSCAFT00000049381 GeneID:477640 KEGG:cfa:477640
Uniprot:J9NZ20
Length = 217
Score = 115 (45.5 bits), Expect = 8.8e-07, P = 8.8e-07
Identities = 24/78 (30%), Positives = 46/78 (58%)
Query: 19 SGTKLYISNLEYGVSNEDIKELFSEVGELKRCSVHFDRSGR-SKGTAEVVLTRRADAIAA 77
S + +Y+SNL + ++N D+ +FS+ G++ + ++ D+ R SKG A ++ + A+
Sbjct: 8 SKSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSALNC 67
Query: 78 VKRYNNVQLDGKPMKIEI 95
+ NN QL G+ +K I
Sbjct: 68 TRAINNKQLFGRVIKASI 85
>MGI|MGI:1914447 [details] [associations]
symbol:Zcrb1 "zinc finger CCHC-type and RNA binding motif 1"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005681 "spliceosomal complex" evidence=IEA]
[GO:0005689 "U12-type spliceosomal complex" evidence=ISO]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA]
[GO:0046872 "metal ion binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR001878 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00098
PROSITE:PS50102 PROSITE:PS50158 SMART:SM00343 SMART:SM00360
MGI:MGI:1914447 GO:GO:0005654 GO:GO:0008380 GO:GO:0000166
GO:GO:0046872 GO:GO:0008270 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0003723 Gene3D:4.10.60.10 HOVERGEN:HBG107480 GO:GO:0005689
GeneTree:ENSGT00600000084414 HSSP:Q7YZ92 CTD:85437
HOGENOM:HOG000007632 KO:K13154 OMA:RXVTIMK OrthoDB:EOG4GXFNW
eggNOG:NOG270852 EMBL:AB095989 EMBL:AK012852 EMBL:AK170136
EMBL:BC058368 IPI:IPI00112291 IPI:IPI00798500 RefSeq:NP_080301.1
UniGene:Mm.293181 ProteinModelPortal:Q9CZ96 SMR:Q9CZ96
STRING:Q9CZ96 PhosphoSite:Q9CZ96 PRIDE:Q9CZ96
Ensembl:ENSMUST00000076070 Ensembl:ENSMUST00000162160 GeneID:67197
KEGG:mmu:67197 UCSC:uc007xiu.1 UCSC:uc007xiv.1 InParanoid:Q9CZ96
ChiTaRS:ZCRB1 NextBio:323848 Bgee:Q9CZ96 CleanEx:MM_ZCRB1
Genevestigator:Q9CZ96 GermOnline:ENSMUSG00000022635 Uniprot:Q9CZ96
Length = 217
Score = 115 (45.5 bits), Expect = 8.8e-07, P = 8.8e-07
Identities = 24/78 (30%), Positives = 46/78 (58%)
Query: 19 SGTKLYISNLEYGVSNEDIKELFSEVGELKRCSVHFDRSGR-SKGTAEVVLTRRADAIAA 77
S + +Y+SNL + ++N D+ +FS+ G++ + ++ D+ R SKG A ++ + A+
Sbjct: 8 SKSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSALNC 67
Query: 78 VKRYNNVQLDGKPMKIEI 95
+ NN QL G+ +K I
Sbjct: 68 TRAINNKQLFGRVIKASI 85
>RGD|1309851 [details] [associations]
symbol:Zcrb1 "zinc finger CCHC-type and RNA binding motif 1"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005654
"nucleoplasm" evidence=IEA] [GO:0005689 "U12-type spliceosomal
complex" evidence=IEA;ISO] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0008380 "RNA splicing" evidence=IEA] InterPro:IPR000504
InterPro:IPR001878 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00098
PROSITE:PS50102 PROSITE:PS50158 SMART:SM00343 SMART:SM00360
RGD:1309851 GO:GO:0005654 GO:GO:0008380 GO:GO:0000166 GO:GO:0046872
GO:GO:0008270 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723
Gene3D:4.10.60.10 HOVERGEN:HBG107480 GO:GO:0005689
GeneTree:ENSGT00600000084414 HSSP:P62995 CTD:85437
HOGENOM:HOG000007632 KO:K13154 OMA:RXVTIMK OrthoDB:EOG4GXFNW
eggNOG:NOG270852 EMBL:BC099747 IPI:IPI00211761
RefSeq:NP_001030112.1 UniGene:Rn.136969 ProteinModelPortal:Q499V6
SMR:Q499V6 STRING:Q499V6 Ensembl:ENSRNOT00000006780 GeneID:362990
KEGG:rno:362990 InParanoid:Q499V6 NextBio:682050
Genevestigator:Q499V6 GermOnline:ENSRNOG00000004996 Uniprot:Q499V6
Length = 217
Score = 115 (45.5 bits), Expect = 8.8e-07, P = 8.8e-07
Identities = 24/78 (30%), Positives = 46/78 (58%)
Query: 19 SGTKLYISNLEYGVSNEDIKELFSEVGELKRCSVHFDRSGR-SKGTAEVVLTRRADAIAA 77
S + +Y+SNL + ++N D+ +FS+ G++ + ++ D+ R SKG A ++ + A+
Sbjct: 8 SKSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSALNC 67
Query: 78 VKRYNNVQLDGKPMKIEI 95
+ NN QL G+ +K I
Sbjct: 68 TRAINNKQLFGRVIKASI 85
>UNIPROTKB|F1MYI2 [details] [associations]
symbol:HNRNPM "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003723 "RNA binding" evidence=IEA] [GO:0000398 "mRNA
splicing, via spliceosome" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
InterPro:IPR024667 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0000398
GeneTree:ENSGT00410000025635 PANTHER:PTHR23003:SF6
EMBL:DAAA02019521 EMBL:DAAA02019520 IPI:IPI00903735
Ensembl:ENSBTAT00000028022 ArrayExpress:F1MYI2 Uniprot:F1MYI2
Length = 549
Score = 122 (48.0 bits), Expect = 1.0e-06, P = 1.0e-06
Identities = 22/76 (28%), Positives = 45/76 (59%)
Query: 20 GTKLYISNLEYGVSNEDIKELFSEVGELKRCSVHFDRSGRSKGTAEVVLTRRADAIAAVK 79
G+ ++++NL+Y V + +KE+FS G + R + D+ G+S+G V + +A+ A+
Sbjct: 40 GSTVFVANLDYKVGWKKLKEVFSMAGVVVRADILEDKDGKSRGIGTVTFEQSIEAVQAIS 99
Query: 80 RYNNVQLDGKPMKIEI 95
+N L +PM +++
Sbjct: 100 MFNGQLLFDRPMHVKM 115
>UNIPROTKB|Q5ZL80 [details] [associations]
symbol:HNRNPM "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0000380 "alternative
mRNA splicing, via spliceosome" evidence=IEA] [GO:0016363 "nuclear
matrix" evidence=IEA] [GO:0019904 "protein domain specific binding"
evidence=IEA] [GO:0042382 "paraspeckles" evidence=IEA] [GO:0071013
"catalytic step 2 spliceosome" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 InterPro:IPR024667 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
GO:GO:0016363 GO:GO:0071013 eggNOG:COG0724 GO:GO:0000380
GO:GO:0042382 GeneTree:ENSGT00410000025635 CTD:4670
HOGENOM:HOG000231932 HOVERGEN:HBG054880 KO:K12887 OMA:PGIERMA
OrthoDB:EOG4RBQJN InterPro:IPR024666 PANTHER:PTHR23003:SF6
Pfam:PF11532 EMBL:AADN02063494 EMBL:AADN02063495 EMBL:AADN02063496
EMBL:AJ719854 IPI:IPI00594541 RefSeq:NP_001026103.1
UniGene:Gga.13144 SMR:Q5ZL80 STRING:Q5ZL80
Ensembl:ENSGALT00000000510 GeneID:420054 KEGG:gga:420054
InParanoid:Q5ZL80 NextBio:20823019 Uniprot:Q5ZL80
Length = 709
Score = 123 (48.4 bits), Expect = 1.1e-06, P = 1.1e-06
Identities = 22/76 (28%), Positives = 45/76 (59%)
Query: 20 GTKLYISNLEYGVSNEDIKELFSEVGELKRCSVHFDRSGRSKGTAEVVLTRRADAIAAVK 79
G+ ++++NL+Y V + +KE+FS G + R + D+ G+S+G V + +A+ A+
Sbjct: 209 GSTVFVANLDYKVGWKKLKEVFSMAGAVVRADILEDKDGKSRGIGTVTFEQAIEAVQAIS 268
Query: 80 RYNNVQLDGKPMKIEI 95
+N L +PM +++
Sbjct: 269 MFNGQLLFDRPMHVKM 284
>ZFIN|ZDB-GENE-051120-114 [details] [associations]
symbol:myef2 "myelin expression factor 2"
species:7955 "Danio rerio" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0008150 "biological_process" evidence=ND] [GO:0005575
"cellular_component" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-051120-114 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 HOGENOM:HOG000231932 HOVERGEN:HBG054880 CTD:50804
OrthoDB:EOG4VDPZN EMBL:BC108001 IPI:IPI00656464
RefSeq:NP_001032500.1 UniGene:Dr.77011 ProteinModelPortal:Q32PS6
SMR:Q32PS6 PRIDE:Q32PS6 GeneID:641483 KEGG:dre:641483
NextBio:20901587 ArrayExpress:Q32PS6 Bgee:Q32PS6 Uniprot:Q32PS6
Length = 557
Score = 121 (47.7 bits), Expect = 1.3e-06, P = 1.3e-06
Identities = 23/90 (25%), Positives = 49/90 (54%)
Query: 20 GTKLYISNLEYGVSNEDIKELFSEVGELKRCSVHFDRSGRSKGTAEVVLTRRADAIAAVK 79
G ++++NL++ V + +KE+F G ++R V D+ G+S+G V + +A+ A+
Sbjct: 211 GATIFVANLDFKVGWKKLKEVFGMAGTVRRADVKEDKDGKSRGMGTVTFEQPLEAVQAIS 270
Query: 80 RYNNVQLDGKPMKIEIIGTNIGPPAAVLPI 109
+N L + M +++ ++ PP P+
Sbjct: 271 MFNGQMLFDRQMHVKMDDKSL-PPDDFRPV 299
>RGD|620369 [details] [associations]
symbol:Hnrnpm "heterogeneous nuclear ribonucleoprotein M"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000380 "alternative mRNA splicing, via
spliceosome" evidence=ISO] [GO:0000398 "mRNA splicing, via
spliceosome" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA;TAS] [GO:0003823 "antigen binding" evidence=IMP]
[GO:0005515 "protein binding" evidence=IPI] [GO:0005634 "nucleus"
evidence=ISO] [GO:0005654 "nucleoplasm" evidence=ISO] [GO:0005681
"spliceosomal complex" evidence=IEA;ISO] [GO:0016363 "nuclear
matrix" evidence=IEA;ISO] [GO:0019904 "protein domain specific
binding" evidence=ISO] [GO:0042382 "paraspeckles" evidence=ISO]
[GO:0071013 "catalytic step 2 spliceosome" evidence=ISO]
[GO:0005730 "nucleolus" evidence=ISO] InterPro:IPR000504
InterPro:IPR012677 InterPro:IPR024667 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 RGD:620369 GO:GO:0003823 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0005681 GO:GO:0003723 GO:GO:0016363
GO:GO:0000398 eggNOG:COG0724 GeneTree:ENSGT00410000025635 CTD:4670
HOGENOM:HOG000231932 HOVERGEN:HBG054880 KO:K12887
InterPro:IPR024666 PANTHER:PTHR23003:SF6 Pfam:PF11532 EMBL:U32577
EMBL:BC088317 IPI:IPI00209148 IPI:IPI01016435 RefSeq:NP_001103381.1
RefSeq:NP_446328.2 UniGene:Rn.10156 ProteinModelPortal:Q62826
SMR:Q62826 PhosphoSite:Q62826 PRIDE:Q62826
Ensembl:ENSRNOT00000059985 GeneID:116655 KEGG:rno:116655
UCSC:RGD:620369 NextBio:619427 Genevestigator:Q62826
GermOnline:ENSRNOG00000007921 Uniprot:Q62826
Length = 690
Score = 122 (48.0 bits), Expect = 1.4e-06, P = 1.4e-06
Identities = 22/76 (28%), Positives = 45/76 (59%)
Query: 20 GTKLYISNLEYGVSNEDIKELFSEVGELKRCSVHFDRSGRSKGTAEVVLTRRADAIAAVK 79
G+ ++++NL+Y V + +KE+FS G + R + D+ G+S+G V + +A+ A+
Sbjct: 163 GSTVFVANLDYKVGWKKLKEVFSMAGVVVRADILEDKDGKSRGIGTVTFEQSIEAVQAIS 222
Query: 80 RYNNVQLDGKPMKIEI 95
+N L +PM +++
Sbjct: 223 MFNGQLLFDRPMHVKM 238
>UNIPROTKB|F1LV13 [details] [associations]
symbol:Hnrpm "Protein Hnrpm" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0000398 "mRNA splicing, via spliceosome" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 InterPro:IPR024667 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
GO:GO:0000398 GeneTree:ENSGT00410000025635 CTD:4670 KO:K12887
InterPro:IPR024666 PANTHER:PTHR23003:SF6 Pfam:PF11532
IPI:IPI01016435 RefSeq:NP_446328.2 UniGene:Rn.10156 GeneID:116655
KEGG:rno:116655 NextBio:619427 PRIDE:F1LV13
Ensembl:ENSRNOT00000011047 Uniprot:F1LV13
Length = 690
Score = 122 (48.0 bits), Expect = 1.4e-06, P = 1.4e-06
Identities = 22/76 (28%), Positives = 45/76 (59%)
Query: 20 GTKLYISNLEYGVSNEDIKELFSEVGELKRCSVHFDRSGRSKGTAEVVLTRRADAIAAVK 79
G+ ++++NL+Y V + +KE+FS G + R + D+ G+S+G V + +A+ A+
Sbjct: 163 GSTVFVANLDYKVGWKKLKEVFSMAGVVVRADILEDKDGKSRGIGTVTFEQSIEAVQAIS 222
Query: 80 RYNNVQLDGKPMKIEI 95
+N L +PM +++
Sbjct: 223 MFNGQLLFDRPMHVKM 238
>UNIPROTKB|Q62826 [details] [associations]
symbol:Hnrnpm "Heterogeneous nuclear ribonucleoprotein M"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
InterPro:IPR024667 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:620369 GO:GO:0003823 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0005681 GO:GO:0003723 GO:GO:0016363 GO:GO:0000398
eggNOG:COG0724 GeneTree:ENSGT00410000025635 CTD:4670
HOGENOM:HOG000231932 HOVERGEN:HBG054880 KO:K12887
InterPro:IPR024666 PANTHER:PTHR23003:SF6 Pfam:PF11532 EMBL:U32577
EMBL:BC088317 IPI:IPI00209148 IPI:IPI01016435 RefSeq:NP_001103381.1
RefSeq:NP_446328.2 UniGene:Rn.10156 ProteinModelPortal:Q62826
SMR:Q62826 PhosphoSite:Q62826 PRIDE:Q62826
Ensembl:ENSRNOT00000059985 GeneID:116655 KEGG:rno:116655
UCSC:RGD:620369 NextBio:619427 Genevestigator:Q62826
GermOnline:ENSRNOG00000007921 Uniprot:Q62826
Length = 690
Score = 122 (48.0 bits), Expect = 1.4e-06, P = 1.4e-06
Identities = 22/76 (28%), Positives = 45/76 (59%)
Query: 20 GTKLYISNLEYGVSNEDIKELFSEVGELKRCSVHFDRSGRSKGTAEVVLTRRADAIAAVK 79
G+ ++++NL+Y V + +KE+FS G + R + D+ G+S+G V + +A+ A+
Sbjct: 163 GSTVFVANLDYKVGWKKLKEVFSMAGVVVRADILEDKDGKSRGIGTVTFEQSIEAVQAIS 222
Query: 80 RYNNVQLDGKPMKIEI 95
+N L +PM +++
Sbjct: 223 MFNGQLLFDRPMHVKM 238
>UNIPROTKB|F1SA50 [details] [associations]
symbol:HNRNPM "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0071013 "catalytic step 2 spliceosome" evidence=IEA]
[GO:0042382 "paraspeckles" evidence=IEA] [GO:0019904 "protein
domain specific binding" evidence=IEA] [GO:0016363 "nuclear matrix"
evidence=IEA] [GO:0000380 "alternative mRNA splicing, via
spliceosome" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 InterPro:IPR024667 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
GO:GO:0016363 GO:GO:0071013 GO:GO:0000380 GO:GO:0042382
GeneTree:ENSGT00410000025635 OMA:PGIERMA InterPro:IPR024666
PANTHER:PTHR23003:SF6 Pfam:PF11532 EMBL:FP090904
Ensembl:ENSSSCT00000014856 Uniprot:F1SA50
Length = 704
Score = 122 (48.0 bits), Expect = 1.4e-06, P = 1.4e-06
Identities = 22/76 (28%), Positives = 45/76 (59%)
Query: 20 GTKLYISNLEYGVSNEDIKELFSEVGELKRCSVHFDRSGRSKGTAEVVLTRRADAIAAVK 79
G+ ++++NL+Y V + +KE+FS G + R + D+ G+S+G V + +A+ A+
Sbjct: 177 GSTVFVANLDYKVGWKKLKEVFSMAGVVVRADILEDKDGKSRGIGTVTFEQSIEAVQAIS 236
Query: 80 RYNNVQLDGKPMKIEI 95
+N L +PM +++
Sbjct: 237 MFNGQLLFDRPMHVKM 252
>UNIPROTKB|F1MY44 [details] [associations]
symbol:HNRNPM "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0071013 "catalytic step 2 spliceosome" evidence=IEA]
[GO:0042382 "paraspeckles" evidence=IEA] [GO:0019904 "protein
domain specific binding" evidence=IEA] [GO:0016363 "nuclear matrix"
evidence=IEA] [GO:0000380 "alternative mRNA splicing, via
spliceosome" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 InterPro:IPR024667 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
GO:GO:0016363 GO:GO:0071013 GO:GO:0000380 GO:GO:0042382
GeneTree:ENSGT00410000025635 CTD:4670 KO:K12887 OMA:PGIERMA
InterPro:IPR024666 PANTHER:PTHR23003:SF6 Pfam:PF11532
EMBL:DAAA02019521 EMBL:DAAA02019520 IPI:IPI00826962
RefSeq:NP_001178152.1 UniGene:Bt.48882 PRIDE:F1MY44
Ensembl:ENSBTAT00000011559 GeneID:515290 KEGG:bta:515290
NextBio:20871749 ArrayExpress:F1MY44 Uniprot:F1MY44
Length = 730
Score = 122 (48.0 bits), Expect = 1.5e-06, P = 1.5e-06
Identities = 22/76 (28%), Positives = 45/76 (59%)
Query: 20 GTKLYISNLEYGVSNEDIKELFSEVGELKRCSVHFDRSGRSKGTAEVVLTRRADAIAAVK 79
G+ ++++NL+Y V + +KE+FS G + R + D+ G+S+G V + +A+ A+
Sbjct: 203 GSTVFVANLDYKVGWKKLKEVFSMAGVVVRADILEDKDGKSRGIGTVTFEQSIEAVQAIS 262
Query: 80 RYNNVQLDGKPMKIEI 95
+N L +PM +++
Sbjct: 263 MFNGQLLFDRPMHVKM 278
>UNIPROTKB|P52272 [details] [associations]
symbol:HNRNPM "Heterogeneous nuclear ribonucleoprotein M"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0019904 "protein domain specific binding"
evidence=IPI] [GO:0071013 "catalytic step 2 spliceosome"
evidence=IDA] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=IC;TAS] [GO:0005887 "integral to plasma membrane"
evidence=TAS] [GO:0005681 "spliceosomal complex" evidence=IDA]
[GO:0003723 "RNA binding" evidence=NAS] [GO:0005654 "nucleoplasm"
evidence=IDA;TAS] [GO:0008380 "RNA splicing" evidence=TAS]
[GO:0010467 "gene expression" evidence=TAS] [GO:0005515 "protein
binding" evidence=IPI] [GO:0016363 "nuclear matrix" evidence=IDA]
[GO:0042382 "paraspeckles" evidence=IDA] [GO:0000380 "alternative
mRNA splicing, via spliceosome" evidence=IMP] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005730 "nucleolus" evidence=IDA]
Reactome:REACT_71 InterPro:IPR000504 InterPro:IPR012677
InterPro:IPR024667 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005887 GO:GO:0000166 Reactome:REACT_1675 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0016363 GO:GO:0071013 eggNOG:COG0724
GO:GO:0000380 GO:GO:0042382 EMBL:L03532 EMBL:L32611 EMBL:AF061832
EMBL:BC000138 EMBL:BC008895 EMBL:BC019580 IPI:IPI00171903
IPI:IPI00383296 PIR:S35532 RefSeq:NP_005959.2 RefSeq:NP_112480.2
UniGene:Hs.465808 UniGene:Hs.666214 PDB:2DGV PDB:2DH9 PDB:2DO0
PDB:2OT8 PDBsum:2DGV PDBsum:2DH9 PDBsum:2DO0 PDBsum:2OT8
ProteinModelPortal:P52272 SMR:P52272 DIP:DIP-29336N IntAct:P52272
MINT:MINT-4999200 STRING:P52272 PhosphoSite:P52272 DMDM:55977747
REPRODUCTION-2DPAGE:IPI00383296 UCD-2DPAGE:P52272 PaxDb:P52272
PRIDE:P52272 Ensembl:ENST00000325495 Ensembl:ENST00000348943
GeneID:4670 KEGG:hsa:4670 UCSC:uc010dwd.3 UCSC:uc010dwe.3 CTD:4670
GeneCards:GC19P008509 H-InvDB:HIX0137462 HGNC:HGNC:5046
HPA:CAB016113 HPA:HPA024344 MIM:160994 neXtProt:NX_P52272
PharmGKB:PA29370 HOGENOM:HOG000231932 HOVERGEN:HBG054880
InParanoid:P52272 KO:K12887 OMA:PGIERMA OrthoDB:EOG4RBQJN
PhylomeDB:P52272 ChiTaRS:HNRNPM EvolutionaryTrace:P52272
GenomeRNAi:4670 NextBio:17994 ArrayExpress:P52272 Bgee:P52272
CleanEx:HS_HNRNPM Genevestigator:P52272 GermOnline:ENSG00000099783
InterPro:IPR024666 PANTHER:PTHR23003:SF6 Pfam:PF11532
Uniprot:P52272
Length = 730
Score = 122 (48.0 bits), Expect = 1.5e-06, P = 1.5e-06
Identities = 22/76 (28%), Positives = 45/76 (59%)
Query: 20 GTKLYISNLEYGVSNEDIKELFSEVGELKRCSVHFDRSGRSKGTAEVVLTRRADAIAAVK 79
G+ ++++NL+Y V + +KE+FS G + R + D+ G+S+G V + +A+ A+
Sbjct: 203 GSTVFVANLDYKVGWKKLKEVFSMAGVVVRADILEDKDGKSRGIGTVTFEQSIEAVQAIS 262
Query: 80 RYNNVQLDGKPMKIEI 95
+N L +PM +++
Sbjct: 263 MFNGQLLFDRPMHVKM 278
>UNIPROTKB|E2RMR3 [details] [associations]
symbol:HNRNPM "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000398 "mRNA splicing, via spliceosome" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 InterPro:IPR024667 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
GO:GO:0000398 GeneTree:ENSGT00410000025635 OMA:PGIERMA
InterPro:IPR024666 PANTHER:PTHR23003:SF6 Pfam:PF11532
EMBL:AAEX03012475 Ensembl:ENSCAFT00000029410 Uniprot:E2RMR3
Length = 743
Score = 122 (48.0 bits), Expect = 1.5e-06, P = 1.5e-06
Identities = 22/76 (28%), Positives = 45/76 (59%)
Query: 20 GTKLYISNLEYGVSNEDIKELFSEVGELKRCSVHFDRSGRSKGTAEVVLTRRADAIAAVK 79
G+ ++++NL+Y V + +KE+FS G + R + D+ G+S+G V + +A+ A+
Sbjct: 216 GSTVFVANLDYKVGWKKLKEVFSMAGVVVRADILEDKDGKSRGIGTVTFEQSIEAVQAIS 275
Query: 80 RYNNVQLDGKPMKIEI 95
+N L +PM +++
Sbjct: 276 MFNGQLLFDRPMHVKM 291
>UNIPROTKB|F5H606 [details] [associations]
symbol:RBM7 "RNA-binding protein 7" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 HGNC:HGNC:9904
EMBL:AP002373 IPI:IPI01013862 ProteinModelPortal:F5H606 SMR:F5H606
Ensembl:ENST00000542140 ArrayExpress:F5H606 Bgee:F5H606
Uniprot:F5H606
Length = 123
Score = 109 (43.4 bits), Expect = 2.1e-06, P = 2.1e-06
Identities = 27/100 (27%), Positives = 50/100 (50%)
Query: 14 SSSIESGTKLYISNLEYGVSNEDIKELFSEVGELKRCSVHFDRSGRSKGTAEVVLTRRAD 73
+++ E+ L++ NLE V+ E + ELF + G + + + D+ G+ K A V
Sbjct: 3 AAAAEADRTLFVGNLETKVTEELLFELFHQAGPVIKVKIPKDKDGKPKQFAFVNFKHEVS 62
Query: 74 AIAAVKRYNNVQLDGKPMKIEIIGTNIGPPAAVLPITNVM 113
A+ N ++L G+P+KI+ + +V I N+M
Sbjct: 63 VPYAMNLLNGIKLYGRPIKIQFRSVVMPHKMSVCHIPNIM 102
>UNIPROTKB|E2R4B2 [details] [associations]
symbol:TRA2A "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104309 OMA:DRYEEYD EMBL:AAEX03009371
Ensembl:ENSCAFT00000004456 Uniprot:E2R4B2
Length = 278
Score = 114 (45.2 bits), Expect = 2.3e-06, P = 2.3e-06
Identities = 26/78 (33%), Positives = 46/78 (58%)
Query: 18 ESGTKLYISNLEYGVSNEDIKELFSEVGELKRCSVHFD-RSGRSKGTAEVVLTRRADAIA 76
+ T L + L + D++E+FS G L +V +D R+GRS+G A V R D+
Sbjct: 116 DPNTCLGVFGLSLYTTERDLREVFSRYGPLSGVNVVYDQRTGRSRGFAFVYFERIDDSKE 175
Query: 77 AVKRYNNVQLDGKPMKIE 94
A++R N ++LDG+ ++++
Sbjct: 176 AMERANGMELDGRRIRVD 193
>UNIPROTKB|Q06AA6 [details] [associations]
symbol:TRA2A "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005634 "nucleus" evidence=IEA] [GO:0000398 "mRNA
splicing, via spliceosome" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0000398 eggNOG:COG0724
HOGENOM:HOG000276232 GeneTree:ENSGT00700000104309 CTD:29896
HOVERGEN:HBG102125 KO:K12897 OMA:DRYEEYD OrthoDB:EOG4BVRW2
EMBL:CU928731 EMBL:DQ972958 RefSeq:NP_001070691.1 UniGene:Ssc.14084
SMR:Q06AA6 Ensembl:ENSSSCT00000016762 GeneID:768110 KEGG:ssc:768110
Uniprot:Q06AA6
Length = 279
Score = 114 (45.2 bits), Expect = 2.3e-06, P = 2.3e-06
Identities = 26/78 (33%), Positives = 46/78 (58%)
Query: 18 ESGTKLYISNLEYGVSNEDIKELFSEVGELKRCSVHFD-RSGRSKGTAEVVLTRRADAIA 76
+ T L + L + D++E+FS G L +V +D R+GRS+G A V R D+
Sbjct: 116 DPNTCLGVFGLSLYTTERDLREVFSRYGPLSGVNVVYDQRTGRSRGFAFVYFERIDDSKE 175
Query: 77 AVKRYNNVQLDGKPMKIE 94
A++R N ++LDG+ ++++
Sbjct: 176 AMERANGMELDGRRIRVD 193
>UNIPROTKB|Q2KJ71 [details] [associations]
symbol:TRA2A "Transformer 2 alpha homolog (Drosophila)"
species:9913 "Bos taurus" [GO:0005634 "nucleus" evidence=IEA]
[GO:0000398 "mRNA splicing, via spliceosome" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GO:GO:0000398 eggNOG:COG0724 HOGENOM:HOG000276232
GeneTree:ENSGT00700000104309 CTD:29896 HOVERGEN:HBG102125 KO:K12897
OMA:DRYEEYD OrthoDB:EOG4BVRW2 EMBL:DAAA02010222 EMBL:BC105489
IPI:IPI00695902 RefSeq:NP_001039845.1 UniGene:Bt.43563 SMR:Q2KJ71
STRING:Q2KJ71 Ensembl:ENSBTAT00000016756 GeneID:534586
KEGG:bta:534586 InParanoid:Q2KJ71 NextBio:20876456 Uniprot:Q2KJ71
Length = 281
Score = 114 (45.2 bits), Expect = 2.3e-06, P = 2.3e-06
Identities = 26/78 (33%), Positives = 46/78 (58%)
Query: 18 ESGTKLYISNLEYGVSNEDIKELFSEVGELKRCSVHFD-RSGRSKGTAEVVLTRRADAIA 76
+ T L + L + D++E+FS G L +V +D R+GRS+G A V R D+
Sbjct: 116 DPNTCLGVFGLSLYTTERDLREVFSRYGPLSGVNVVYDQRTGRSRGFAFVYFERIDDSKE 175
Query: 77 AVKRYNNVQLDGKPMKIE 94
A++R N ++LDG+ ++++
Sbjct: 176 AMERANGMELDGRRIRVD 193
>MGI|MGI:1933972 [details] [associations]
symbol:Tra2a "transformer 2 alpha homolog (Drosophila)"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=ISO] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=ISS] [GO:0005515 "protein
binding" evidence=IPI] [GO:0005634 "nucleus" evidence=ISO;IDA]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0008380 "RNA
splicing" evidence=IEA] [GO:0042802 "identical protein binding"
evidence=IPI] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 MGI:MGI:1933972 GO:GO:0005634
GO:GO:0008380 GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0003723 eggNOG:COG0724 HOGENOM:HOG000276232
HOVERGEN:HBG102125 OrthoDB:EOG4BVRW2 ChiTaRS:TRA2A EMBL:BC057448
IPI:IPI01008014 UniGene:Mm.196598 ProteinModelPortal:Q6PFR5
SMR:Q6PFR5 IntAct:Q6PFR5 STRING:Q6PFR5 PhosphoSite:Q6PFR5
PaxDb:Q6PFR5 PRIDE:Q6PFR5 UCSC:uc009bwm.1 InParanoid:Q6PFR5
CleanEx:MM_TRA2A Genevestigator:Q6PFR5
GermOnline:ENSMUSG00000029817 Uniprot:Q6PFR5
Length = 281
Score = 114 (45.2 bits), Expect = 2.3e-06, P = 2.3e-06
Identities = 26/78 (33%), Positives = 46/78 (58%)
Query: 18 ESGTKLYISNLEYGVSNEDIKELFSEVGELKRCSVHFD-RSGRSKGTAEVVLTRRADAIA 76
+ T L + L + D++E+FS G L +V +D R+GRS+G A V R D+
Sbjct: 114 DPNTCLGVFGLSLYTTERDLREVFSRYGPLSGVNVVYDQRTGRSRGFAFVYFERIDDSKE 173
Query: 77 AVKRYNNVQLDGKPMKIE 94
A++R N ++LDG+ ++++
Sbjct: 174 AMERANGMELDGRRIRVD 191
>UNIPROTKB|Q13595 [details] [associations]
symbol:TRA2A "Transformer-2 protein homolog alpha"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0000398
"mRNA splicing, via spliceosome" evidence=IDA] [GO:0005634
"nucleus" evidence=IDA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0000398
eggNOG:COG0724 HOGENOM:HOG000276232 EMBL:U53209 EMBL:BC017094
IPI:IPI00013891 IPI:IPI00220447 RefSeq:NP_037425.1
UniGene:Hs.445652 ProteinModelPortal:Q13595 SMR:Q13595
IntAct:Q13595 MINT:MINT-1683046 STRING:Q13595 PhosphoSite:Q13595
DMDM:4033480 PaxDb:Q13595 PRIDE:Q13595 DNASU:29896
Ensembl:ENST00000297071 GeneID:29896 KEGG:hsa:29896 UCSC:uc003swi.3
CTD:29896 GeneCards:GC07M023544 HGNC:HGNC:16645 HPA:HPA054018
MIM:602718 neXtProt:NX_Q13595 PharmGKB:PA164726707
HOVERGEN:HBG102125 InParanoid:Q13595 KO:K12897 OMA:DRYEEYD
OrthoDB:EOG4BVRW2 PhylomeDB:Q13595 ChiTaRS:TRA2A GenomeRNAi:29896
NextBio:52459 ArrayExpress:Q13595 Bgee:Q13595 Genevestigator:Q13595
GermOnline:ENSG00000164548 Uniprot:Q13595
Length = 282
Score = 114 (45.2 bits), Expect = 2.3e-06, P = 2.3e-06
Identities = 26/78 (33%), Positives = 46/78 (58%)
Query: 18 ESGTKLYISNLEYGVSNEDIKELFSEVGELKRCSVHFD-RSGRSKGTAEVVLTRRADAIA 76
+ T L + L + D++E+FS G L +V +D R+GRS+G A V R D+
Sbjct: 116 DPNTCLGVFGLSLYTTERDLREVFSRYGPLSGVNVVYDQRTGRSRGFAFVYFERIDDSKE 175
Query: 77 AVKRYNNVQLDGKPMKIE 94
A++R N ++LDG+ ++++
Sbjct: 176 AMERANGMELDGRRIRVD 193
>RGD|1562563 [details] [associations]
symbol:Tra2a "transformer 2 alpha homolog (Drosophila)"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=IEA;ISO] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005515 "protein binding" evidence=IPI] [GO:0005634 "nucleus"
evidence=IEA;ISO] [GO:0042802 "identical protein binding"
evidence=ISO] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 RGD:1562563 GO:GO:0005634
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0000398
eggNOG:COG0724 HOGENOM:HOG000276232 GeneTree:ENSGT00700000104309
HOVERGEN:HBG102125 OrthoDB:EOG4BVRW2 EMBL:BC161978 IPI:IPI00201580
UniGene:Rn.203363 SMR:B1WC25 STRING:B1WC25
Ensembl:ENSRNOT00000012325 UCSC:RGD:1562563 Genevestigator:B1WC25
Uniprot:B1WC25
Length = 282
Score = 114 (45.2 bits), Expect = 2.3e-06, P = 2.3e-06
Identities = 26/78 (33%), Positives = 46/78 (58%)
Query: 18 ESGTKLYISNLEYGVSNEDIKELFSEVGELKRCSVHFD-RSGRSKGTAEVVLTRRADAIA 76
+ T L + L + D++E+FS G L +V +D R+GRS+G A V R D+
Sbjct: 114 DPNTCLGVFGLSLYTTERDLREVFSRYGPLSGVNVVYDQRTGRSRGFAFVYFERIDDSKE 173
Query: 77 AVKRYNNVQLDGKPMKIE 94
A++R N ++LDG+ ++++
Sbjct: 174 AMERANGMELDGRRIRVD 191
>MGI|MGI:1926465 [details] [associations]
symbol:Hnrnpm "heterogeneous nuclear ribonucleoprotein M"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000380 "alternative mRNA splicing, via
spliceosome" evidence=ISO] [GO:0000398 "mRNA splicing, via
spliceosome" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0003823
"antigen binding" evidence=ISO] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005654 "nucleoplasm" evidence=ISO] [GO:0005681 "spliceosomal
complex" evidence=ISO] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0016363 "nuclear
matrix" evidence=ISO] [GO:0019904 "protein domain specific binding"
evidence=ISO] [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
[GO:0042382 "paraspeckles" evidence=ISO] [GO:0071013 "catalytic
step 2 spliceosome" evidence=ISO] InterPro:IPR000504
InterPro:IPR012677 InterPro:IPR024667 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 MGI:MGI:1926465 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0016363 GO:GO:0071013 eggNOG:COG0724
GO:GO:0000380 GO:GO:0042382 GeneTree:ENSGT00410000025635 CTD:4670
HOGENOM:HOG000231932 HOVERGEN:HBG054880 KO:K12887 OMA:PGIERMA
ChiTaRS:HNRNPM InterPro:IPR024666 PANTHER:PTHR23003:SF6
Pfam:PF11532 EMBL:AK011521 EMBL:BC005758 EMBL:BC065172
IPI:IPI00132443 IPI:IPI00480357 RefSeq:NP_001103383.1
RefSeq:NP_084080.1 UniGene:Mm.311439 ProteinModelPortal:Q9D0E1
SMR:Q9D0E1 IntAct:Q9D0E1 STRING:Q9D0E1 PhosphoSite:Q9D0E1
PaxDb:Q9D0E1 PRIDE:Q9D0E1 Ensembl:ENSMUST00000087582
Ensembl:ENSMUST00000148178 GeneID:76936 KEGG:mmu:76936
InParanoid:Q9D0E1 NextBio:346119 Bgee:Q9D0E1 Genevestigator:Q9D0E1
Uniprot:Q9D0E1
Length = 729
Score = 120 (47.3 bits), Expect = 2.4e-06, P = 2.4e-06
Identities = 22/76 (28%), Positives = 45/76 (59%)
Query: 20 GTKLYISNLEYGVSNEDIKELFSEVGELKRCSVHFDRSGRSKGTAEVVLTRRADAIAAVK 79
G+ ++++NL+Y V + +KE+FS G + R + D+ G+S+G V + +A+ A+
Sbjct: 202 GSTVFVANLDYKVGWKKLKEVFSMAGVVVRADILEDKDGKSRGIGIVTFEQSIEAVQAIS 261
Query: 80 RYNNVQLDGKPMKIEI 95
+N L +PM +++
Sbjct: 262 MFNGQLLFDRPMHVKM 277
>WB|WBGene00011059 [details] [associations]
symbol:R06C1.4 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724
HOGENOM:HOG000276232 GeneTree:ENSGT00550000074641 HSSP:P33240
EMBL:Z81106 PIR:T23960 RefSeq:NP_493029.1 ProteinModelPortal:O62337
SMR:O62337 STRING:O62337 PaxDb:O62337 EnsemblMetazoa:R06C1.4
GeneID:173076 KEGG:cel:CELE_R06C1.4 UCSC:R06C1.4 CTD:173076
WormBase:R06C1.4 InParanoid:O62337 OMA:RVYLPVD NextBio:878179
Uniprot:O62337
Length = 84
Score = 108 (43.1 bits), Expect = 2.6e-06, P = 2.6e-06
Identities = 23/75 (30%), Positives = 42/75 (56%)
Query: 20 GTKLYISNLEYGVSNEDIKELFSEVGELKRCSVHFDR-SGRSKGTAEVVLTRRADAIAAV 78
G +Y+ N+ Y + E+I F+ VG + + +DR +GR +G A V + A A AV
Sbjct: 5 GFSVYVGNVPYQGTEEEIGNYFAAVGHVNNVRIVYDRETGRPRGFAFVEFSEEAGAQRAV 64
Query: 79 KRYNNVQLDGKPMKI 93
++ N V +G+ +++
Sbjct: 65 EQLNGVAFNGRNLRV 79
>FB|FBgn0030956 [details] [associations]
symbol:CG18259 species:7227 "Drosophila melanogaster"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 EMBL:AE014298 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00390000018868 HSSP:O08583 OrthoDB:EOG40CFZS
EMBL:BT100285 RefSeq:NP_573324.1 UniGene:Dm.19742 SMR:Q9VWQ6
IntAct:Q9VWQ6 MINT:MINT-304999 STRING:Q9VWQ6
EnsemblMetazoa:FBtr0074661 GeneID:32866 KEGG:dme:Dmel_CG18259
UCSC:CG18259-RA FlyBase:FBgn0030956 InParanoid:Q9VWQ6
GenomeRNAi:32866 NextBio:780786 Uniprot:Q9VWQ6
Length = 474
Score = 117 (46.2 bits), Expect = 2.8e-06, P = 2.8e-06
Identities = 29/84 (34%), Positives = 46/84 (54%)
Query: 13 RSSSIESGTKLYISNLEYGVSNEDIKELFSEVGELKRCSVHFDRSGRSKGTAEVVLTRRA 72
R+S+ + G +L +SNL V+ DI+ELFS++G + +D GTAEV+
Sbjct: 358 RTSNTKDGYRLLVSNLHTNVTTADIRELFSDIGPV------YDARVVRPGTAEVIYKSLE 411
Query: 73 DAIAAVKRYNNVQLDGKPMKIEII 96
A AV Y++ Q D +PM ++
Sbjct: 412 HAEKAVDTYHHRQFDDQPMHCVLV 435
>FB|FBgn0030959 [details] [associations]
symbol:CG6961 species:7227 "Drosophila melanogaster"
[GO:0003729 "mRNA binding" evidence=ISS] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:2001020 "regulation of response to DNA damage
stimulus" evidence=IGI] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
EMBL:AE014298 GO:GO:0003729 Gene3D:3.30.70.330 eggNOG:NOG268669
GeneTree:ENSGT00390000018868 HSSP:O08583 EMBL:AY061430
RefSeq:NP_573325.1 UniGene:Dm.19168 SMR:Q9VWQ3 STRING:Q9VWQ3
EnsemblMetazoa:FBtr0074660 GeneID:32869 KEGG:dme:Dmel_CG6961
UCSC:CG6961-RA FlyBase:FBgn0030959 InParanoid:Q9VWQ3 OMA:NDIGPMY
OrthoDB:EOG40CFZS GenomeRNAi:32869 NextBio:780796 Uniprot:Q9VWQ3
Length = 474
Score = 117 (46.2 bits), Expect = 2.8e-06, P = 2.8e-06
Identities = 29/84 (34%), Positives = 46/84 (54%)
Query: 13 RSSSIESGTKLYISNLEYGVSNEDIKELFSEVGELKRCSVHFDRSGRSKGTAEVVLTRRA 72
R+S+ + G +L +SNL V+ DI+ELFS++G + +D GTAEV+
Sbjct: 358 RTSNTKDGYRLLVSNLHTNVTTADIRELFSDIGPV------YDARVVRPGTAEVIYKSLE 411
Query: 73 DAIAAVKRYNNVQLDGKPMKIEII 96
A AV Y++ Q D +PM ++
Sbjct: 412 HAEKAVDTYHHRQFDDQPMHCVLV 435
>WB|WBGene00001340 [details] [associations]
symbol:etr-1 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0009792
"embryo development ending in birth or egg hatching" evidence=IMP]
[GO:0002119 "nematode larval development" evidence=IMP] [GO:0010171
"body morphogenesis" evidence=IMP] [GO:0048477 "oogenesis"
evidence=IMP] [GO:0018991 "oviposition" evidence=IMP] [GO:0040011
"locomotion" evidence=IMP] [GO:0040002 "collagen and
cuticulin-based cuticle development" evidence=IMP] [GO:0000003
"reproduction" evidence=IMP] [GO:0006915 "apoptotic process"
evidence=IMP] [GO:0061199 "striated muscle contraction involved in
embryonic body morphogenesis" evidence=IMP] [GO:0008340
"determination of adult lifespan" evidence=IMP] [GO:0005634
"nucleus" evidence=IDA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0008340
GO:GO:0009792 GO:GO:0018991 GO:GO:0006915 GO:GO:0002119
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0010171 GO:GO:0040011
GO:GO:0048477 GO:GO:0003676 GO:GO:0040002 KO:K13207
HOGENOM:HOG000004754 GeneTree:ENSGT00560000076837 EMBL:FO081419
UniGene:Cel.5079 GeneID:173401 KEGG:cel:CELE_T01D1.2
UCSC:T01D1.2a.1 CTD:173401 NextBio:879497 RefSeq:NP_001122631.1
ProteinModelPortal:A8DYS0 SMR:A8DYS0 IntAct:A8DYS0 STRING:A8DYS0
EnsemblMetazoa:T01D1.2f.1 EnsemblMetazoa:T01D1.2f.2
EnsemblMetazoa:T01D1.2f.3 EnsemblMetazoa:T01D1.2f.4
EnsemblMetazoa:T01D1.2f.5 EnsemblMetazoa:T01D1.2f.6
WormBase:T01D1.2f InParanoid:A8DYS0 ArrayExpress:A8DYS0
Uniprot:A8DYS0
Length = 588
Score = 118 (46.6 bits), Expect = 3.0e-06, P = 3.0e-06
Identities = 26/80 (32%), Positives = 48/80 (60%)
Query: 22 KLYISNLEYGVSNEDIKELFSEVGELKRCSVHFDRSGRSKGTAEVVLTRRADAIAAVKRY 81
KL+I L + E+++E+F++ G ++ CSV D+ G+S+G A V T R+ A+ A K
Sbjct: 143 KLFIGQLSKKHNEENLREIFAKFGHIEDCSVLRDQDGKSRGCAFVTFTNRSCAVVATKEM 202
Query: 82 NNVQ-LDG--KPMKIEIIGT 98
++ Q ++G P+ ++ T
Sbjct: 203 HHSQTMEGCSAPLVVKFADT 222
>FB|FBgn0037602 [details] [associations]
symbol:CG8021 species:7227 "Drosophila melanogaster"
[GO:0003729 "mRNA binding" evidence=ISS] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0046331 "lateral inhibition" evidence=IMP]
[GO:0035145 "exon-exon junction complex" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 EMBL:AE014297 GO:GO:0000166 GO:GO:0003729
Gene3D:3.30.70.330 GO:GO:0046331 HSSP:Q14103
GeneTree:ENSGT00390000008624 EMBL:BT031072 EMBL:BT032713
RefSeq:NP_649808.1 UniGene:Dm.36782 SMR:Q9VHP3
EnsemblMetazoa:FBtr0081878 GeneID:41021 KEGG:dme:Dmel_CG8021
UCSC:CG8021-RA FlyBase:FBgn0037602 InParanoid:Q9VHP3 OMA:HVANAEV
OrthoDB:EOG4M0CJB GenomeRNAi:41021 NextBio:821758 Uniprot:Q9VHP3
Length = 91
Score = 107 (42.7 bits), Expect = 3.4e-06, P = 3.4e-06
Identities = 25/82 (30%), Positives = 44/82 (53%)
Query: 14 SSSIESGTKLYISNLEYGVSNEDIKELFSEVGELKRCSVHFDRS-GRSKGTAEVVLTRRA 72
S + S KL++ NL + + +++++ FS+ G + V FDR G SK VV ++R
Sbjct: 3 SGFVRSSYKLFVGNLPWTIGSKELRTYFSKYGHVANAEVVFDRQLGLSKHYGFVVFSQR- 61
Query: 73 DAIAAVKRYNNVQLDGKPMKIE 94
DA + N LDG+ + ++
Sbjct: 62 DAFNSASNQNTHFLDGRVLTVQ 83
>WB|WBGene00011155 [details] [associations]
symbol:R09B3.2 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724
HOGENOM:HOG000276232 GeneTree:ENSGT00550000074641 EMBL:Z81108
HSSP:P33240 PIR:T24067 RefSeq:NP_493022.1 ProteinModelPortal:O45712
SMR:O45712 DIP:DIP-25840N MINT:MINT-1057569 STRING:O45712
PaxDb:O45712 EnsemblMetazoa:R09B3.2 GeneID:173070
KEGG:cel:CELE_R09B3.2 UCSC:R09B3.2 CTD:173070 WormBase:R09B3.2
InParanoid:O45712 OMA:NINEARP NextBio:878155 Uniprot:O45712
Length = 83
Score = 106 (42.4 bits), Expect = 4.3e-06, P = 4.3e-06
Identities = 18/74 (24%), Positives = 40/74 (54%)
Query: 23 LYISNLEYGVSNEDIKELFSEVGELKRCSVHFDR-SGRSKGTAEVVLTRRADAIAAVKRY 81
+Y+ N + + E++ FS +G++ + DR +GR +G A + A AV++
Sbjct: 7 VYVGNAPFQTTEEELGNFFSSIGQINNVRIVCDRETGRPRGFAFIEFAEEGSAQRAVEQM 66
Query: 82 NNVQLDGKPMKIEI 95
N + +G+P+++ +
Sbjct: 67 NGAEFNGRPLRVNL 80
>ASPGD|ASPL0000076347 [details] [associations]
symbol:AN4505 species:162425 "Emericella nidulans"
[GO:0005634 "nucleus" evidence=IEA] [GO:0005829 "cytosol"
evidence=IEA] [GO:0006396 "RNA processing" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR008111
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR01738 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005737 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0006396 EMBL:BN001303
EMBL:AACD01000078 HOGENOM:HOG000183826 KO:K12876 eggNOG:NOG246776
OrthoDB:EOG4M9523 RefSeq:XP_662109.1 ProteinModelPortal:Q5B4M5
SMR:Q5B4M5 STRING:Q5B4M5 EnsemblFungi:CADANIAT00005939
GeneID:2872307 KEGG:ani:AN4505.2 OMA:IEGWIII Uniprot:Q5B4M5
Length = 158
Score = 109 (43.4 bits), Expect = 5.0e-06, P = 5.0e-06
Identities = 36/112 (32%), Positives = 55/112 (49%)
Query: 16 SIESGTKLYISNLEYGVSNEDIKELFSEVGELKRCSVHFDR-SGRSKGTAEVVLTRRADA 74
SIE G + +N+ S ED+ +LF+E GE+K S++ DR +G KG A + + +A
Sbjct: 38 SIE-GWIIIATNIHEEASEEDVTDLFAEYGEIKNFSLNLDRRTGYVKGYALIEYSTLPEA 96
Query: 75 IAAVKRYNNVQLDGKPMKIEIIGTNIGPPAAVLPITNVMYGNEIGMTRSRLR 126
A+K N +L IE+ + PP + + G G RSR R
Sbjct: 97 AEAIKELNGTKL--LDQTIEVDYAFVRPPPSNKGKSGGR-GGRGGRNRSRSR 145
>UNIPROTKB|F1SV06 [details] [associations]
symbol:PABPC4 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0010494 "cytoplasmic stress granule" evidence=IEA]
[GO:0008266 "poly(U) RNA binding" evidence=IEA] [GO:0008143
"poly(A) RNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0005634
GO:GO:0008266 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0010494
GO:GO:0008143 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 GeneTree:ENSGT00640000091232 OMA:XVVCDEN
EMBL:CR956622 Ensembl:ENSSSCT00000004056 Uniprot:F1SV06
Length = 631
Score = 116 (45.9 bits), Expect = 5.3e-06, P = 5.3e-06
Identities = 27/69 (39%), Positives = 38/69 (55%)
Query: 21 TKLYISNLEYGVSNEDIKELFSEVGELKRCSVHFDRSGRSKGTAEVVLTRRADAIAAVKR 80
T +YI N V +E++KELFS+ G+ V D SG+SKG V + DA AV+
Sbjct: 191 TNVYIKNFGEEVDDENLKELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEE 250
Query: 81 YNNVQLDGK 89
N ++ GK
Sbjct: 251 MNGKEISGK 259
>UNIPROTKB|H0YCC8 [details] [associations]
symbol:PABPC4 "Polyadenylate-binding protein 4"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AL365277 EMBL:AL845289 HGNC:HGNC:8557 ChiTaRS:PABPC4
Ensembl:ENST00000474378 Uniprot:H0YCC8
Length = 197
Score = 112 (44.5 bits), Expect = 5.4e-06, P = 5.4e-06
Identities = 26/69 (37%), Positives = 37/69 (53%)
Query: 21 TKLYISNLEYGVSNEDIKELFSEVGELKRCSVHFDRSGRSKGTAEVVLTRRADAIAAVKR 80
T +YI N V +E +KELFS+ G+ V D +G+SKG V + DA AV+
Sbjct: 104 TNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPNGKSKGFGFVSYEKHEDANKAVEE 163
Query: 81 YNNVQLDGK 89
N ++ GK
Sbjct: 164 MNGKEISGK 172
>WB|WBGene00003903 [details] [associations]
symbol:pab-2 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0009792 "embryo development ending in
birth or egg hatching" evidence=IMP] [GO:0000003 "reproduction"
evidence=IMP] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0009792 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0000003
GO:GO:0003723 eggNOG:COG0724 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 HSSP:P11940
GeneTree:ENSGT00640000091232 EMBL:Z50110 PIR:T21095
RefSeq:NP_510260.1 ProteinModelPortal:Q19579 SMR:Q19579
STRING:Q19579 PaxDb:Q19579 PRIDE:Q19579 EnsemblMetazoa:F18H3.3a.1
EnsemblMetazoa:F18H3.3a.2 EnsemblMetazoa:F18H3.3a.3
EnsemblMetazoa:F18H3.3a.4 GeneID:181473 KEGG:cel:CELE_F18H3.3
UCSC:F18H3.3a.3 CTD:181473 WormBase:F18H3.3a InParanoid:Q19579
OMA:YEESNIG NextBio:914090 ArrayExpress:Q19579 Uniprot:Q19579
Length = 692
Score = 116 (45.9 bits), Expect = 6.0e-06, P = 6.0e-06
Identities = 23/76 (30%), Positives = 41/76 (53%)
Query: 20 GTKLYISNLEYGVSNEDIKELFSEVGELKRCSVHFDRSGRSKGTAEVVLTRRADAIAAVK 79
G LY+ N+E ++++ +++ FS G + V D +GRSKG V + +A AAV
Sbjct: 342 GVNLYVKNIEEDLNDDGLRDHFSSFGTITSAKVMVDENGRSKGFGFVCFEKPEEATAAVT 401
Query: 80 RYNNVQLDGKPMKIEI 95
N+ + KP+ + +
Sbjct: 402 DMNSKMIGAKPLYVAL 417
>ASPGD|ASPL0000073559 [details] [associations]
symbol:AN10574 species:162425 "Emericella nidulans"
[GO:0006396 "RNA processing" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR000504 InterPro:IPR003107 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 SMART:SM00386
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0005622
GO:GO:0006396 EMBL:BN001303 ProteinModelPortal:C8VB25
EnsemblFungi:CADANIAT00005779 OMA:ERATRHC Uniprot:C8VB25
Length = 1290
Score = 119 (46.9 bits), Expect = 6.1e-06, P = 6.1e-06
Identities = 27/100 (27%), Positives = 51/100 (51%)
Query: 13 RSSSIESGTKLYISNLEYGVSNEDIKELFSEVGELKRCSVHFDRSGRSKGTAEVVLTRRA 72
R+ I G ++++SN+ + S +D+KELFS G ++ + G SKG VV + +
Sbjct: 988 RNGPIYEGREIHVSNVNWSASEDDLKELFSRFGTVELVRLPRKVDGGSKGFGYVVFSSKE 1047
Query: 73 DAIAAVKRYNNVQLDGKPMKIEIIGTNIGPPAAVLPITNV 112
+A AA+ + + G+P+ +++ A +T V
Sbjct: 1048 EATAALAMHEQ-EFRGRPLHVKVSAPQGAKRIAATVVTRV 1086
>UNIPROTKB|E2R9I0 [details] [associations]
symbol:PABPC4 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0010494 "cytoplasmic stress granule"
evidence=IEA] [GO:0008266 "poly(U) RNA binding" evidence=IEA]
[GO:0008143 "poly(A) RNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0005634 GO:GO:0008266 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0010494 GO:GO:0008143 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 GeneTree:ENSGT00640000091232 OMA:XVVCDEN
EMBL:AAEX03009572 ProteinModelPortal:E2R9I0
Ensembl:ENSCAFT00000004950 Uniprot:E2R9I0
Length = 631
Score = 115 (45.5 bits), Expect = 6.8e-06, P = 6.8e-06
Identities = 27/69 (39%), Positives = 37/69 (53%)
Query: 21 TKLYISNLEYGVSNEDIKELFSEVGELKRCSVHFDRSGRSKGTAEVVLTRRADAIAAVKR 80
T +YI N V +E +KELFS+ G+ V D SG+SKG V + DA AV+
Sbjct: 191 TNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEE 250
Query: 81 YNNVQLDGK 89
N ++ GK
Sbjct: 251 MNGKEISGK 259
>TAIR|locus:2076096 [details] [associations]
symbol:GRP4 "glycine-rich RNA-binding protein 4"
species:3702 "Arabidopsis thaliana" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS;IDA]
[GO:0005739 "mitochondrion" evidence=IDA] [GO:0003690
"double-stranded DNA binding" evidence=IDA] [GO:0003697
"single-stranded DNA binding" evidence=IDA] [GO:0006970 "response
to osmotic stress" evidence=IMP] [GO:0009409 "response to cold"
evidence=IEP] [GO:0009414 "response to water deprivation"
evidence=IEP] [GO:0009651 "response to salt stress" evidence=IMP]
[GO:0006364 "rRNA processing" evidence=RCA] [GO:0009664 "plant-type
cell wall organization" evidence=RCA] [GO:0042545 "cell wall
modification" evidence=RCA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005739
EMBL:CP002686 GO:GO:0000166 GO:GO:0009651 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0003690 GO:GO:0003697 EMBL:AP001297
eggNOG:COG0724 HOGENOM:HOG000276232 HSSP:Q14103
ProtClustDB:PLN03134 EMBL:AY070755 EMBL:AY097374 EMBL:AY085838
IPI:IPI00523873 RefSeq:NP_189025.1 RefSeq:NP_850629.1
UniGene:At.8272 ProteinModelPortal:Q9LIS2 SMR:Q9LIS2 STRING:Q9LIS2
PaxDb:Q8LDS0 PRIDE:Q9LIS2 EnsemblPlants:AT3G23830.1
EnsemblPlants:AT3G23830.2 GeneID:821966 KEGG:ath:AT3G23830
GeneFarm:3951 TAIR:At3g23830 InParanoid:Q9LIS2 OMA:CEDSANN
PhylomeDB:Q9LIS2 Genevestigator:Q9LIS2 Uniprot:Q9LIS2
Length = 136
Score = 104 (41.7 bits), Expect = 7.0e-06, P = 7.0e-06
Identities = 21/76 (27%), Positives = 43/76 (56%)
Query: 21 TKLYISNLEYGVSNEDIKELFSEVGELKRCSVHFDR-SGRSKGTAEVVLTRRADAIAAVK 79
+KL++ L +G + +K+ F+ GE+ +V DR +GRS+G V + A A+K
Sbjct: 35 SKLFVGGLSWGTDDSSLKQAFTSFGEVTEATVIADRETGRSRGFGFVSFSCEDSANNAIK 94
Query: 80 RYNNVQLDGKPMKIEI 95
+ +L+G+ +++ +
Sbjct: 95 EMDGKELNGRQIRVNL 110
>UNIPROTKB|A4IFC3 [details] [associations]
symbol:PABPC4 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0010494 "cytoplasmic stress granule" evidence=IEA]
[GO:0008266 "poly(U) RNA binding" evidence=IEA] [GO:0008143
"poly(A) RNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0005634
GO:GO:0008266 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0010494
eggNOG:COG0724 GO:GO:0008143 HOVERGEN:HBG002295 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
HOGENOM:HOG000217922 GeneTree:ENSGT00640000091232 CTD:8761
OMA:XVVCDEN OrthoDB:EOG4T1HM1 EMBL:DAAA02009142 EMBL:BC134509
IPI:IPI00689745 RefSeq:NP_001077193.1 UniGene:Bt.11192 SMR:A4IFC3
Ensembl:ENSBTAT00000022761 GeneID:534576 KEGG:bta:534576
InParanoid:A4IFC3 NextBio:20876450 Uniprot:A4IFC3
Length = 645
Score = 115 (45.5 bits), Expect = 7.0e-06, P = 7.0e-06
Identities = 27/69 (39%), Positives = 38/69 (55%)
Query: 21 TKLYISNLEYGVSNEDIKELFSEVGELKRCSVHFDRSGRSKGTAEVVLTRRADAIAAVKR 80
T +YI N V +E++KELFS+ G+ V D SG+SKG V + DA AV+
Sbjct: 191 TNVYIKNFGEEVDDENLKELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEE 250
Query: 81 YNNVQLDGK 89
N ++ GK
Sbjct: 251 MNGKEITGK 259
>WB|WBGene00004705 [details] [associations]
symbol:rsp-8 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0040007
"growth" evidence=IMP] [GO:0002119 "nematode larval development"
evidence=IMP] [GO:0040010 "positive regulation of growth rate"
evidence=IMP] [GO:0040011 "locomotion" evidence=IMP] [GO:0048477
"oogenesis" evidence=IMP] [GO:0000003 "reproduction" evidence=IMP]
[GO:0008406 "gonad development" evidence=IMP] [GO:0009792 "embryo
development ending in birth or egg hatching" evidence=IMP]
[GO:0040035 "hermaphrodite genitalia development" evidence=IMP]
[GO:0002009 "morphogenesis of an epithelium" evidence=IMP]
[GO:0003723 "RNA binding" evidence=ISS] [GO:0000398 "mRNA splicing,
via spliceosome" evidence=ISS] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0009792 GO:GO:0002009 GO:GO:0040007 GO:GO:0040010
GO:GO:0008406 GO:GO:0002119 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0040011 GO:GO:0048477 GO:GO:0003723 GO:GO:0040035
GO:GO:0000398 GeneTree:ENSGT00700000104309 HSSP:Q14103 KO:K12897
eggNOG:NOG297815 EMBL:Z92826 GeneID:176613 KEGG:cel:CELE_C18D11.4
CTD:176613 PIR:T19389 RefSeq:NP_001255142.1
ProteinModelPortal:Q9XTZ2 SMR:Q9XTZ2 DIP:DIP-26572N
MINT:MINT-1084022 STRING:Q9XTZ2 PaxDb:Q9XTZ2
EnsemblMetazoa:C18D11.4a.1 EnsemblMetazoa:C18D11.4a.2
UCSC:C18D11.4.1 WormBase:C18D11.4a InParanoid:Q9XTZ2 OMA:RENPQPS
NextBio:893300 Uniprot:Q9XTZ2
Length = 309
Score = 113 (44.8 bits), Expect = 7.3e-06, P = 7.3e-06
Identities = 25/80 (31%), Positives = 43/80 (53%)
Query: 23 LYISNLEYGVSNEDIKELFSEVGELKRCSVHFDR-SGRSKGTAEVVLTRRADAIAAVKRY 81
L + NL + +D++++F E GE+ +C + +DR SG S+G + DA AA +
Sbjct: 78 LGVFNLSSYTTEKDLRDVFGEFGEINKCDLVYDRPSGNSRGFGFIYFNLIEDATAARDKL 137
Query: 82 NNVQLDGKPMKIEIIGTNIG 101
N LDG ++++ T G
Sbjct: 138 CNTDLDGHKIRVDFSLTKRG 157
>ZFIN|ZDB-GENE-040426-2516 [details] [associations]
symbol:zgc:77052 "zgc:77052" species:7955 "Danio
rerio" [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-040426-2516 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 eggNOG:COG0724 HOGENOM:HOG000234441
HOVERGEN:HBG002295 GeneTree:ENSGT00700000104347 InterPro:IPR012956
Pfam:PF08143 OrthoDB:EOG42BX9K EMBL:FP085391 EMBL:BC066681
IPI:IPI00497482 RefSeq:NP_998467.1 UniGene:Dr.75633 SMR:Q6NYA1
STRING:Q6NYA1 Ensembl:ENSDART00000098408 GeneID:406594
KEGG:dre:406594 OMA:EIKTYFS NextBio:20818146 Uniprot:Q6NYA1
Length = 309
Score = 113 (44.8 bits), Expect = 7.3e-06, P = 7.3e-06
Identities = 22/73 (30%), Positives = 43/73 (58%)
Query: 18 ESGTKLYISNLEYGVSNEDIKELFSEVGELKRCSVHFD-RSGRSKGTAEVVLTRRADAIA 76
E K+++ L + S +D+K+ FS+ GE+ C++ D +GRS+G +L + +D++
Sbjct: 42 EDAGKMFVGGLSWDTSKKDLKDYFSKFGEVMDCTIKMDSNTGRSRGFG-FILFKESDSVD 100
Query: 77 AVKRYNNVQLDGK 89
V + +LDG+
Sbjct: 101 RVLQQKEHRLDGR 113
>UNIPROTKB|E2R9I1 [details] [associations]
symbol:PABPC4 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0046983 "protein dimerization activity"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR011598
InterPro:IPR012677 Pfam:PF00010 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS50888 PROSITE:PS51309 SMART:SM00353
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 Gene3D:4.10.280.10 SUPFAM:SSF47459
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
GeneTree:ENSGT00640000091232 EMBL:AAEX03009572
Ensembl:ENSCAFT00000004949 Uniprot:E2R9I1
Length = 700
Score = 115 (45.5 bits), Expect = 7.8e-06, P = 7.8e-06
Identities = 27/69 (39%), Positives = 37/69 (53%)
Query: 21 TKLYISNLEYGVSNEDIKELFSEVGELKRCSVHFDRSGRSKGTAEVVLTRRADAIAAVKR 80
T +YI N V +E +KELFS+ G+ V D SG+SKG V + DA AV+
Sbjct: 231 TNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEE 290
Query: 81 YNNVQLDGK 89
N ++ GK
Sbjct: 291 MNGKEISGK 299
>TAIR|locus:2040625 [details] [associations]
symbol:PAB7 "poly(A) binding protein 7" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA;ISS] [GO:0003743
"translation initiation factor activity" evidence=ISS]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0005634
EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 EMBL:AC006282 eggNOG:COG0724
KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
HOGENOM:HOG000217922 IPI:IPI00535861 PIR:B84783 RefSeq:NP_181204.1
UniGene:At.37531 UniGene:At.50119 ProteinModelPortal:Q9ZQA8
SMR:Q9ZQA8 PaxDb:Q9ZQA8 PRIDE:Q9ZQA8 EnsemblPlants:AT2G36660.1
GeneID:818238 KEGG:ath:AT2G36660 TAIR:At2g36660 InParanoid:Q9ZQA8
OMA:RSLCYGY PhylomeDB:Q9ZQA8 ProtClustDB:CLSN2913328
Genevestigator:Q9ZQA8 GermOnline:AT2G36660 Uniprot:Q9ZQA8
Length = 609
Score = 114 (45.2 bits), Expect = 8.3e-06, P = 8.3e-06
Identities = 22/75 (29%), Positives = 41/75 (54%)
Query: 21 TKLYISNLEYGVSNEDIKELFSEVGELKRCSVHFDRSGRSKGTAEVVLTRRADAIAAVKR 80
+ +Y+ N+ V+ E++++ FS+ G + + D G+SKG V + +AI AVK
Sbjct: 304 SNIYVKNVNVAVTEEELRKHFSQCGTITSTKLMCDEKGKSKGFGFVCFSTPEEAIDAVKT 363
Query: 81 YNNVQLDGKPMKIEI 95
++ GKP+ + I
Sbjct: 364 FHGQMFHGKPLYVAI 378
>TAIR|locus:2199700 [details] [associations]
symbol:PAB3 "poly(A) binding protein 3" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA;ISS] [GO:0003743
"translation initiation factor activity" evidence=ISS] [GO:0006397
"mRNA processing" evidence=IGI] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 EMBL:CP002684 GenomeReviews:CT485782_GR
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723
eggNOG:COG0724 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 EMBL:AC003979 EMBL:Y12227
EMBL:AF293840 EMBL:AY054490 IPI:IPI00543342 PIR:T00768
RefSeq:NP_173690.1 UniGene:At.208 ProteinModelPortal:O64380
SMR:O64380 PaxDb:O64380 PRIDE:O64380 EnsemblPlants:AT1G22760.1
GeneID:838882 KEGG:ath:AT1G22760 TAIR:At1g22760 InParanoid:O64380
OMA:SSISHQK PhylomeDB:O64380 ProtClustDB:CLSN2679283
Genevestigator:O64380 GermOnline:AT1G22760 Uniprot:O64380
Length = 660
Score = 114 (45.2 bits), Expect = 9.3e-06, P = 9.3e-06
Identities = 24/76 (31%), Positives = 39/76 (51%)
Query: 20 GTKLYISNLEYGVSNEDIKELFSEVGELKRCSVHFDRSGRSKGTAEVVLTRRADAIAAVK 79
G LY+ NL+ V +E +KE+FSE G + V + G S+G V + +A+ A+
Sbjct: 331 GANLYLKNLDDSVDDEKLKEMFSEYGNVTSSKVMLNPQGMSRGFGFVAYSNPEEALRALS 390
Query: 80 RYNNVQLDGKPMKIEI 95
N + KP+ I +
Sbjct: 391 EMNGKMIGRKPLYIAL 406
Score = 107 (42.7 bits), Expect = 0.00052, P = 0.00052
Identities = 23/76 (30%), Positives = 39/76 (51%)
Query: 14 SSSIESGTKLYISNLEYGVSNEDIKELFSEVGELKRCSVHFDRSGRSKGTAEVVLTRRAD 73
S+ + ++I NL+ + N+ + E FS G + C V D +GRSKG V +
Sbjct: 129 STRLSGKGNIFIKNLDASIDNKALFETFSSFGTILSCKVAMDVTGRSKGYGFVQFEKEES 188
Query: 74 AIAAVKRYNNVQLDGK 89
A AA+ + N + ++ K
Sbjct: 189 AQAAIDKLNGMLMNDK 204
>TAIR|locus:2083810 [details] [associations]
symbol:PSRP2 "plastid-specific ribosomal protein 2"
species:3702 "Arabidopsis thaliana" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS] [GO:0009507
"chloroplast" evidence=ISM;IDA] [GO:0009579 "thylakoid"
evidence=IDA] [GO:0009941 "chloroplast envelope" evidence=IDA]
[GO:0009535 "chloroplast thylakoid membrane" evidence=IDA]
[GO:0009570 "chloroplast stroma" evidence=IDA] [GO:0009773
"photosynthetic electron transport in photosystem I" evidence=RCA]
[GO:0019288 "isopentenyl diphosphate biosynthetic process,
mevalonate-independent pathway" evidence=RCA] [GO:0045036 "protein
targeting to chloroplast" evidence=RCA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0009570 EMBL:CP002686 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0009941 GO:GO:0003676 GO:GO:0009535 KO:K13126 HSSP:Q61474
EMBL:AY070427 EMBL:AY133746 IPI:IPI00523226 RefSeq:NP_001030841.1
RefSeq:NP_566958.3 UniGene:At.3215 ProteinModelPortal:Q8VYM4
SMR:Q8VYM4 STRING:Q8VYM4 PRIDE:Q8VYM4 ProMEX:Q8VYM4
EnsemblPlants:AT3G52150.1 EnsemblPlants:AT3G52150.2 GeneID:824379
KEGG:ath:AT3G52150 TAIR:At3g52150 InParanoid:Q8VYM4 OMA:AEVMYDK
PhylomeDB:Q8VYM4 ProtClustDB:CLSN2918324 ArrayExpress:Q8VYM4
Genevestigator:Q8VYM4 Uniprot:Q8VYM4
Length = 253
Score = 112 (44.5 bits), Expect = 1.2e-05, P = 1.2e-05
Identities = 29/95 (30%), Positives = 51/95 (53%)
Query: 16 SIESGTKLYISNLEYGVSNEDIKELFSEVGELKRCSVHFDR-SGRSKGTAEVVLTRRADA 74
S E+ ++YI N+ V+NE + +L E G +++ V +D+ SGRS+ + DA
Sbjct: 71 SSEAARRVYIGNIPRTVTNEQLTKLVEEHGAVEKVQVMYDKYSGRSRRFGFATMKSVEDA 130
Query: 75 IAAVKRYNNVQLDGKPMKIEIIGTNIG--PPAAVL 107
A V++ N ++G+ +K+ I I P +VL
Sbjct: 131 NAVVEKLNGNTVEGREIKVNITEKPIASSPDLSVL 165
>CGD|CAL0000019 [details] [associations]
symbol:orf19.1646 species:5476 "Candida albicans" [GO:0030686
"90S preribosome" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] [GO:0000472 "endonucleolytic cleavage to generate
mature 5'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA)"
evidence=IEA] [GO:0034462 "small-subunit processome assembly"
evidence=IEA] [GO:0000447 "endonucleolytic cleavage in ITS1 to
separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic
rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=IEA]
[GO:0000480 "endonucleolytic cleavage in 5'-ETS of tricistronic
rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 CGD:CAL0000019 GO:GO:0005634 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0030529 EMBL:AACQ01000014
EMBL:AACQ01000013 GO:GO:0006364 RefSeq:XP_721604.1
RefSeq:XP_721723.1 ProteinModelPortal:Q5AJS6 STRING:Q5AJS6
GeneID:3636592 GeneID:3636694 KEGG:cal:CaO19.1646
KEGG:cal:CaO19.9215 eggNOG:NOG323716 KO:K14787 Uniprot:Q5AJS6
Length = 841
Score = 114 (45.2 bits), Expect = 1.3e-05, P = 1.3e-05
Identities = 26/81 (32%), Positives = 42/81 (51%)
Query: 14 SSSIESGTKLYISNLEYGVSNEDIKELFSEVGELKRCSVHFD-RSGRSKGTAEVVLTRRA 72
+ IE +L+I N+ Y S ED + LFS+ G L+ + D R+G+SKG V ++
Sbjct: 303 AQKIEETGRLFIRNISYEASEEDFRSLFSQYGALEEVHIAIDTRTGKSKGFLYVQFLKKE 362
Query: 73 DAIAAVKRYNNVQLDGKPMKI 93
DA A + + G+ + I
Sbjct: 363 DATRAYRSLDKQIFQGRLLHI 383
>UNIPROTKB|Q56JZ7 [details] [associations]
symbol:ZCRB1 "Zinc finger CCHC-type and RNA-binding
motif-containing protein 1" species:9913 "Bos taurus" [GO:0005654
"nucleoplasm" evidence=IEA] [GO:0005689 "U12-type spliceosomal
complex" evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR001878 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00098
PROSITE:PS50102 PROSITE:PS50158 SMART:SM00343 SMART:SM00360
GO:GO:0005654 GO:GO:0008380 GO:GO:0000166 GO:GO:0046872
GO:GO:0008270 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723
Gene3D:4.10.60.10 eggNOG:COG0724 HOVERGEN:HBG107480 GO:GO:0005689
GeneTree:ENSGT00600000084414 HSSP:Q7YZ92 EMBL:AY911330
EMBL:BC109899 IPI:IPI00690660 RefSeq:NP_001020489.1
UniGene:Bt.48372 ProteinModelPortal:Q56JZ7 SMR:Q56JZ7 STRING:Q56JZ7
Ensembl:ENSBTAT00000025452 GeneID:504536 KEGG:bta:504536 CTD:85437
HOGENOM:HOG000007632 InParanoid:Q56JZ7 KO:K13154 OMA:RXVTIMK
OrthoDB:EOG4GXFNW NextBio:20866714 Uniprot:Q56JZ7
Length = 217
Score = 111 (44.1 bits), Expect = 1.3e-05, P = 1.3e-05
Identities = 24/78 (30%), Positives = 46/78 (58%)
Query: 19 SGTKLYISNLEYGVSNEDIKELFSEVGELKRCSVHFDR-SGRSKGTAEVVLTRRADAIAA 77
S + +Y+SNL + ++N D+ +FS+ G++ + ++ D+ + RSKG A ++ + A
Sbjct: 8 SKSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRRSKGVAFILFLDKDSAQNC 67
Query: 78 VKRYNNVQLDGKPMKIEI 95
+ NN QL G+ +K I
Sbjct: 68 TRAINNKQLFGRVIKASI 85
>UNIPROTKB|F1NH82 [details] [associations]
symbol:F1NH82 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 Gene3D:1.10.1900.10
SUPFAM:SSF63570 GeneTree:ENSGT00640000091232 EMBL:AADN02025122
EMBL:AADN02025123 EMBL:AADN02025124 IPI:IPI00574035
Ensembl:ENSGALT00000023332 Uniprot:F1NH82
Length = 469
Score = 113 (44.8 bits), Expect = 1.5e-05, P = 1.5e-05
Identities = 27/73 (36%), Positives = 37/73 (50%)
Query: 21 TKLYISNLEYGVSNEDIKELFSEVGELKRCSVHFDRSGRSKGTAEVVLTRRADAIAAVKR 80
T +YI N + +E +KELF + G V D SG+SKG V R DA AV
Sbjct: 23 TNVYIKNFGEDMDDERLKELFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDE 82
Query: 81 YNNVQLDGKPMKI 93
N +L+GK + +
Sbjct: 83 MNGKELNGKQIYV 95
>ZFIN|ZDB-GENE-040426-1094 [details] [associations]
symbol:tra2b "transformer 2 beta homolog
(Drosophila)" species:7955 "Danio rerio" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 ZFIN:ZDB-GENE-040426-1094
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 HSSP:Q9V535
HOVERGEN:HBG107480 KO:K12897 CTD:6434 EMBL:BC049051 IPI:IPI00493400
RefSeq:NP_957491.1 UniGene:Dr.9221 ProteinModelPortal:Q7ZUG9
SMR:Q7ZUG9 STRING:Q7ZUG9 PRIDE:Q7ZUG9 GeneID:394172 KEGG:dre:394172
InParanoid:Q7ZUG9 NextBio:20815117 ArrayExpress:Q7ZUG9 Bgee:Q7ZUG9
Uniprot:Q7ZUG9
Length = 278
Score = 112 (44.5 bits), Expect = 1.5e-05, P = 1.5e-05
Identities = 32/105 (30%), Positives = 54/105 (51%)
Query: 23 LYISNLEYGVSNEDIKELFSEVGELKR-CSVHFDRSGRSKGTAEVVLTRRADAIAAVKRY 81
L + L + D++E+FS+ G L C V+ +S RS+G A V R D+ A +R
Sbjct: 125 LGVFGLSLYTTERDLREVFSKYGPLSDVCIVYDQQSRRSRGFALVYFENREDSKEAKERA 184
Query: 82 NNVQLDGKPMKIEIIGTNIGP--PAAVLPITNVMYGNEIGMTRSR 124
N ++LDG+ ++++ T GP P + + YG ++R R
Sbjct: 185 NGMELDGRRIRVDYSITK-GPHTPTPGIYMGRPTYGGGPSVSRRR 228
>ZFIN|ZDB-GENE-040426-1391 [details] [associations]
symbol:tra2a "transformer-2 alpha" species:7955
"Danio rerio" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-040426-1391 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 eggNOG:COG0724 HOGENOM:HOG000276232
GeneTree:ENSGT00700000104309 HSSP:P52298 CTD:29896
HOVERGEN:HBG102125 KO:K12897 OMA:DRYEEYD OrthoDB:EOG4BVRW2
EMBL:BX469899 EMBL:BC054632 IPI:IPI00510581 RefSeq:NP_956710.1
UniGene:Dr.75585 SMR:Q7T2A0 STRING:Q7T2A0
Ensembl:ENSDART00000008595 GeneID:393388 KEGG:dre:393388
InParanoid:Q7T2A0 NextBio:20814435 Uniprot:Q7T2A0
Length = 297
Score = 112 (44.5 bits), Expect = 1.7e-05, P = 1.7e-05
Identities = 26/78 (33%), Positives = 45/78 (57%)
Query: 18 ESGTKLYISNLEYGVSNEDIKELFSEVGELKRCSVHFD-RSGRSKGTAEVVLTRRADAIA 76
+ T L + L + D++E+FS G L +V +D R+GRS+G A V DA
Sbjct: 132 DPNTCLGVFGLSLYTTERDLREVFSRYGSLAGVNVVYDQRTGRSRGFAFVYFEHIDDAKE 191
Query: 77 AVKRYNNVQLDGKPMKIE 94
A++R N ++LDG+ ++++
Sbjct: 192 AMERANGMELDGRRIRVD 209
>WB|WBGene00015329 [details] [associations]
symbol:C02B10.4 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 KO:K12881 EMBL:FO080093 PIR:T32591
RefSeq:NP_500722.1 ProteinModelPortal:O44444 SMR:O44444
IntAct:O44444 STRING:O44444 PaxDb:O44444 EnsemblMetazoa:C02B10.4.1
EnsemblMetazoa:C02B10.4.2 GeneID:177283 KEGG:cel:CELE_C02B10.4
UCSC:C02B10.4.1 CTD:177283 WormBase:C02B10.4 eggNOG:NOG240390
HOGENOM:HOG000021765 InParanoid:O44444 OMA:GPSTLFI NextBio:896110
Uniprot:O44444
Length = 211
Score = 110 (43.8 bits), Expect = 1.8e-05, P = 1.8e-05
Identities = 35/111 (31%), Positives = 55/111 (49%)
Query: 17 IESG-TKLYISNLEYGVSNEDIKELFSEVGELKRCSVHFDRSGRSKGTAEVVLTRRADAI 75
I +G + L I NL V+ ED++ELF + E + +H+ +G S G A++++ AI
Sbjct: 88 IHTGPSTLIIKNLATTVTQEDLEELFEQY-EPELVQLHYGPTGESNGCADLIVPHAQVAI 146
Query: 76 AAVKRYNNVQLDGKPMKIEIIGTNIGPPAAVLP-ITNVMYGNEIGMTRSRL 125
K V LDG+P IE++ N +V I V GN+ R+
Sbjct: 147 IQ-KALEGVLLDGEP--IEVLEANPPKQVSVFDRIKKVSRGNDFKAKNMRV 194
>UNIPROTKB|Q8TBF4 [details] [associations]
symbol:ZCRB1 "Zinc finger CCHC-type and RNA-binding
motif-containing protein 1" species:9606 "Homo sapiens" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0006397
"mRNA processing" evidence=IEA] [GO:0005654 "nucleoplasm"
evidence=IEA] [GO:0005689 "U12-type spliceosomal complex"
evidence=IDA] [GO:0008380 "RNA splicing" evidence=IC]
InterPro:IPR000504 InterPro:IPR001878 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00098 PROSITE:PS50102 PROSITE:PS50158
SMART:SM00343 SMART:SM00360 GO:GO:0005654 GO:GO:0008380
GO:GO:0000166 GO:GO:0046872 GO:GO:0008270 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 EMBL:CH471111 Gene3D:4.10.60.10
HOVERGEN:HBG107480 GO:GO:0005689 CTD:85437 HOGENOM:HOG000007632
KO:K13154 OMA:RXVTIMK OrthoDB:EOG4GXFNW eggNOG:NOG270852
EMBL:AB062361 EMBL:BC010177 EMBL:BC022543 EMBL:BK005200
IPI:IPI00154614 RefSeq:NP_149105.3 UniGene:Hs.496279 PDB:2E5H
PDBsum:2E5H ProteinModelPortal:Q8TBF4 SMR:Q8TBF4 STRING:Q8TBF4
PhosphoSite:Q8TBF4 DMDM:158931154 PRIDE:Q8TBF4 DNASU:85437
Ensembl:ENST00000266529 GeneID:85437 KEGG:hsa:85437 UCSC:uc001rmz.3
GeneCards:GC12M042705 HGNC:HGNC:29620 HPA:HPA038864 MIM:610750
neXtProt:NX_Q8TBF4 PharmGKB:PA143485674 InParanoid:Q8TBF4
PhylomeDB:Q8TBF4 EvolutionaryTrace:Q8TBF4 GenomeRNAi:85437
NextBio:76004 ArrayExpress:Q8TBF4 Bgee:Q8TBF4 CleanEx:HS_ZCRB1
Genevestigator:Q8TBF4 GermOnline:ENSG00000139168 Uniprot:Q8TBF4
Length = 217
Score = 110 (43.8 bits), Expect = 2.0e-05, P = 2.0e-05
Identities = 24/78 (30%), Positives = 45/78 (57%)
Query: 19 SGTKLYISNLEYGVSNEDIKELFSEVGELKRCSVHFDRSGR-SKGTAEVVLTRRADAIAA 77
S + +Y+SNL + ++N D+ +FS+ G++ + ++ D+ R SKG A ++ + A
Sbjct: 8 SKSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNC 67
Query: 78 VKRYNNVQLDGKPMKIEI 95
+ NN QL G+ +K I
Sbjct: 68 TRAINNKQLFGRVIKASI 85
>UNIPROTKB|F1NH81 [details] [associations]
symbol:PABPC1 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 GeneTree:ENSGT00640000091232 OMA:TITSAKX
EMBL:AADN02025122 IPI:IPI00578358 Ensembl:ENSGALT00000023333
Uniprot:F1NH81
Length = 573
Score = 113 (44.8 bits), Expect = 2.0e-05, P = 2.0e-05
Identities = 27/73 (36%), Positives = 37/73 (50%)
Query: 21 TKLYISNLEYGVSNEDIKELFSEVGELKRCSVHFDRSGRSKGTAEVVLTRRADAIAAVKR 80
T +YI N + +E +KELF + G V D SG+SKG V R DA AV
Sbjct: 127 TNVYIKNFGEDMDDERLKELFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDE 186
Query: 81 YNNVQLDGKPMKI 93
N +L+GK + +
Sbjct: 187 MNGKELNGKQIYV 199
>TAIR|locus:2124261 [details] [associations]
symbol:PAB2 "AT4G34110" species:3702 "Arabidopsis
thaliana" [GO:0003723 "RNA binding" evidence=ISS] [GO:0003743
"translation initiation factor activity" evidence=ISS] [GO:0009651
"response to salt stress" evidence=IEP] [GO:0005829 "cytosol"
evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0006486 "protein glycosylation" evidence=RCA] [GO:0006413
"translational initiation" evidence=ISS] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR002343 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PRINTS:PR00961
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0005829 EMBL:CP002687 GenomeReviews:CT486007_GR GO:GO:0000166
GO:GO:0009651 Gene3D:3.30.70.330 GO:GO:0003743 EMBL:AL021961
EMBL:AL161584 eggNOG:COG0724 KO:K13126 Gene3D:1.10.1900.10
SUPFAM:SSF63570 TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 EMBL:L19418
EMBL:BT002354 IPI:IPI00532109 PIR:T05425 RefSeq:NP_195137.5
UniGene:At.25252 ProteinModelPortal:P42731 SMR:P42731 IntAct:P42731
STRING:P42731 PaxDb:P42731 PRIDE:P42731 ProMEX:P42731
EnsemblPlants:AT4G34110.1 GeneID:829557 KEGG:ath:AT4G34110
TAIR:At4g34110 InParanoid:P42731 OMA:FDPIKGR PhylomeDB:P42731
ProtClustDB:CLSN2714507 Genevestigator:P42731 GermOnline:AT4G34110
Uniprot:P42731
Length = 629
Score = 113 (44.8 bits), Expect = 2.2e-05, P = 2.2e-05
Identities = 23/75 (30%), Positives = 41/75 (54%)
Query: 21 TKLYISNLEYGVSNEDIKELFSEVGELKRCSVHFDRSGRSKGTAEVVLTRRADAIAAVKR 80
+ LY+ NL+ +S+E +KE+FS G + V D +G SKG+ V +A A+ +
Sbjct: 318 SNLYVKNLDPSISDEKLKEIFSPFGTVTSSKVMRDPNGTSKGSGFVAFATPEEATEAMSQ 377
Query: 81 YNNVQLDGKPMKIEI 95
+ ++ KP+ + I
Sbjct: 378 LSGKMIESKPLYVAI 392
>UNIPROTKB|B5G279 [details] [associations]
symbol:NCBP2 "Nuclear cap-binding protein subunit 2"
species:59729 "Taeniopygia guttata" [GO:0000340 "RNA
7-methylguanosine cap binding" evidence=ISS] [GO:0045292 "mRNA cis
splicing, via spliceosome" evidence=ISS] InterPro:IPR000504
InterPro:IPR012677 InterPro:IPR027157 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005737 GO:GO:0006417
GO:GO:0000184 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0031047
GO:GO:0000340 GO:GO:0051028 eggNOG:COG0724 GO:GO:0006370
GO:GO:0045292 HOGENOM:HOG000217589 OrthoDB:EOG470TJG
PANTHER:PTHR18847 KO:K12883 EMBL:DQ215986 RefSeq:NP_001232044.1
UniGene:Tgu.10927 ProteinModelPortal:B5G279 STRING:B5G279
GeneID:100190722 KEGG:tgu:100190722 Uniprot:B5G279
Length = 168
Score = 107 (42.7 bits), Expect = 2.2e-05, P = 2.2e-05
Identities = 25/83 (30%), Positives = 47/83 (56%)
Query: 13 RSSSIESGTKLYISNLEYGVSNEDIKELFSEVGELKRCSVHFDRSGRSK-GTAEVVLTRR 71
+ S++ + LY+ NL + + E I+ELFS+ G++KR + D+ ++ G V R
Sbjct: 35 QEKSLKISSTLYVGNLSFYTTEEQIQELFSKCGDVKRIVMGLDKIKKTPCGFCFVEYYTR 94
Query: 72 ADAIAAVKRYNNVQLDGKPMKIE 94
ADA A++ N +LD + ++ +
Sbjct: 95 ADAEHAMRFINGTRLDDRIIRTD 117
>MGI|MGI:1349722 [details] [associations]
symbol:Pabpc1 "poly(A) binding protein, cytoplasmic 1"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000184 "nuclear-transcribed mRNA catabolic
process, nonsense-mediated decay" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0003729 "mRNA binding" evidence=ISO] [GO:0005515
"protein binding" evidence=IPI] [GO:0005634 "nucleus" evidence=ISO]
[GO:0005681 "spliceosomal complex" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IDA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0008022 "protein C-terminus binding"
evidence=ISO] [GO:0008143 "poly(A) RNA binding" evidence=ISO]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0010494 "cytoplasmic
stress granule" evidence=ISO] [GO:0030529 "ribonucleoprotein
complex" evidence=ISO] [GO:0071013 "catalytic step 2 spliceosome"
evidence=ISO] [GO:2000623 "negative regulation of
nuclear-transcribed mRNA catabolic process, nonsense-mediated
decay" evidence=ISO] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
MGI:MGI:1349722 GO:GO:0000184 GO:GO:0008380 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0005681 GO:GO:0010494
eggNOG:COG0724 GO:GO:0008143 EMBL:CH466541 HOVERGEN:HBG002295
KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
HOGENOM:HOG000217922 HSSP:P11940 CTD:26986
GeneTree:ENSGT00640000091232 OMA:TITSAKX OrthoDB:EOG40ZQX5
GO:GO:2000623 ChiTaRS:PABPC1 EMBL:X65553 EMBL:AK044829
EMBL:AK133196 EMBL:AK159703 EMBL:AK159733 EMBL:AK160968
EMBL:AK161123 EMBL:AK161671 EMBL:AK168466 EMBL:BC003870
EMBL:BC011207 EMBL:BC023145 EMBL:BC046233 IPI:IPI00124287
PIR:I48718 RefSeq:NP_032800.2 UniGene:Mm.371570
ProteinModelPortal:P29341 SMR:P29341 DIP:DIP-32127N IntAct:P29341
STRING:P29341 PhosphoSite:P29341 REPRODUCTION-2DPAGE:P29341
PaxDb:P29341 PRIDE:P29341 Ensembl:ENSMUST00000001809 GeneID:18458
KEGG:mmu:18458 InParanoid:Q99L36 NextBio:294152 Bgee:P29341
CleanEx:MM_PABPC1 Genevestigator:P29341
GermOnline:ENSMUSG00000022283 Uniprot:P29341
Length = 636
Score = 113 (44.8 bits), Expect = 2.3e-05, P = 2.3e-05
Identities = 27/73 (36%), Positives = 37/73 (50%)
Query: 21 TKLYISNLEYGVSNEDIKELFSEVGELKRCSVHFDRSGRSKGTAEVVLTRRADAIAAVKR 80
T +YI N + +E +KELF + G V D SG+SKG V R DA AV
Sbjct: 191 TNVYIKNFGEDMDDERLKELFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDE 250
Query: 81 YNNVQLDGKPMKI 93
N +L+GK + +
Sbjct: 251 MNGKELNGKQIYV 263
>RGD|619838 [details] [associations]
symbol:Pabpc1 "poly(A) binding protein, cytoplasmic 1"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000184 "nuclear-transcribed mRNA catabolic
process, nonsense-mediated decay" evidence=IEA] [GO:0003729 "mRNA
binding" evidence=IDA] [GO:0005634 "nucleus" evidence=ISO]
[GO:0005681 "spliceosomal complex" evidence=IEA] [GO:0005737
"cytoplasm" evidence=ISO] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0008022 "protein C-terminus binding"
evidence=ISO] [GO:0008143 "poly(A) RNA binding" evidence=ISO;ISS]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0010494 "cytoplasmic
stress granule" evidence=ISO;ISS] [GO:0030529 "ribonucleoprotein
complex" evidence=ISO;ISS] [GO:0071013 "catalytic step 2
spliceosome" evidence=ISO] [GO:2000623 "negative regulation of
nuclear-transcribed mRNA catabolic process, nonsense-mediated
decay" evidence=ISO;ISS] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
RGD:619838 GO:GO:0000184 GO:GO:0008380 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0005681 GO:GO:0010494 eggNOG:COG0724
GO:GO:0008143 HOVERGEN:HBG002295 KO:K13126 Gene3D:1.10.1900.10
SUPFAM:SSF63570 TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 CTD:26986
GeneTree:ENSGT00640000091232 OMA:TITSAKX OrthoDB:EOG40ZQX5
GO:GO:2000623 EMBL:AJ298278 EMBL:BC083176 IPI:IPI00189074
RefSeq:NP_599180.1 UniGene:Rn.127813 UniGene:Rn.29024
ProteinModelPortal:Q9EPH8 SMR:Q9EPH8 IntAct:Q9EPH8
MINT:MINT-4576919 STRING:Q9EPH8 PhosphoSite:Q9EPH8 PRIDE:Q9EPH8
Ensembl:ENSRNOT00000012775 GeneID:171350 KEGG:rno:171350
UCSC:RGD:619838 InParanoid:Q9EPH8 NextBio:622119
Genevestigator:Q9EPH8 GermOnline:ENSRNOG00000008639 Uniprot:Q9EPH8
Length = 636
Score = 113 (44.8 bits), Expect = 2.3e-05, P = 2.3e-05
Identities = 27/73 (36%), Positives = 37/73 (50%)
Query: 21 TKLYISNLEYGVSNEDIKELFSEVGELKRCSVHFDRSGRSKGTAEVVLTRRADAIAAVKR 80
T +YI N + +E +KELF + G V D SG+SKG V R DA AV
Sbjct: 191 TNVYIKNFGEDMDDERLKELFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDE 250
Query: 81 YNNVQLDGKPMKI 93
N +L+GK + +
Sbjct: 251 MNGKELNGKQIYV 263
>WB|WBGene00003902 [details] [associations]
symbol:pab-1 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0040010 "positive regulation of growth
rate" evidence=IMP] [GO:0000003 "reproduction" evidence=IMP]
[GO:0009792 "embryo development ending in birth or egg hatching"
evidence=IMP] [GO:0002009 "morphogenesis of an epithelium"
evidence=IMP] [GO:0010171 "body morphogenesis" evidence=IMP]
[GO:0040035 "hermaphrodite genitalia development" evidence=IMP]
[GO:0007276 "gamete generation" evidence=IMP] [GO:0006898
"receptor-mediated endocytosis" evidence=IMP] [GO:0040007 "growth"
evidence=IMP] [GO:0003729 "mRNA binding" evidence=IDA] [GO:0043186
"P granule" evidence=IDA] [GO:0000932 "cytoplasmic mRNA processing
body" evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0009792
GO:GO:0002009 GO:GO:0006898 GO:GO:0040007 GO:GO:0040010
GO:GO:0000166 GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0010171
GO:GO:0040035 GO:GO:0000932 GO:GO:0007276 GO:GO:0043186 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
EMBL:AL032631 HSSP:P11940 GeneTree:ENSGT00640000091232
GeneID:172920 KEGG:cel:CELE_Y106G6H.2 UCSC:Y106G6H.2b CTD:172920
NextBio:877531 PIR:T26427 RefSeq:NP_001021709.1
ProteinModelPortal:Q9U302 SMR:Q9U302 DIP:DIP-26308N IntAct:Q9U302
MINT:MINT-226577 STRING:Q9U302 PRIDE:Q9U302
EnsemblMetazoa:Y106G6H.2a.1 EnsemblMetazoa:Y106G6H.2a.2
EnsemblMetazoa:Y106G6H.2a.3 EnsemblMetazoa:Y106G6H.2a.4
EnsemblMetazoa:Y106G6H.2a.5 EnsemblMetazoa:Y106G6H.2a.6
WormBase:Y106G6H.2a InParanoid:Q9U302 OMA:CKVAMDE
ArrayExpress:Q9U302 Uniprot:Q9U302
Length = 646
Score = 113 (44.8 bits), Expect = 2.3e-05, P = 2.3e-05
Identities = 24/76 (31%), Positives = 39/76 (51%)
Query: 20 GTKLYISNLEYGVSNEDIKELFSEVGELKRCSVHFDRSGRSKGTAEVVLTRRADAIAAVK 79
G LY+ NL+ V ++ +K+ F G + V D +GRSKG V + +A +AV
Sbjct: 316 GVNLYVKNLDETVDDDGLKKQFESYGNITSAKVMTDENGRSKGFGFVCFEKPEEATSAVT 375
Query: 80 RYNNVQLDGKPMKIEI 95
N+ + KP+ + I
Sbjct: 376 EMNSKMVCSKPLYVAI 391
>UNIPROTKB|E1C875 [details] [associations]
symbol:TRA2A "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104309 EMBL:AADN02000941 EMBL:AADN02000942
IPI:IPI00681985 ProteinModelPortal:E1C875
Ensembl:ENSGALT00000031186 Uniprot:E1C875
Length = 182
Score = 108 (43.1 bits), Expect = 2.5e-05, P = 2.5e-05
Identities = 25/78 (32%), Positives = 45/78 (57%)
Query: 18 ESGTKLYISNLEYGVSNEDIKELFSEVGELKRCSVHFD-RSGRSKGTAEVVLTRRADAIA 76
+ T L + L + D++E+FS G L +V +D R+GRS+G A V R D+
Sbjct: 15 DPNTCLGVFGLSLYTTERDLREVFSRYGPLTGVNVVYDQRTGRSRGFAFVYFERIDDSKE 74
Query: 77 AVKRYNNVQLDGKPMKIE 94
A++ N ++LDG+ ++++
Sbjct: 75 AMEHANGMELDGRRIRVD 92
>UNIPROTKB|F5GXV8 [details] [associations]
symbol:RBM7 "RNA-binding protein 7" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 HGNC:HGNC:9904
EMBL:AP002373 IPI:IPI00556348 ProteinModelPortal:F5GXV8 SMR:F5GXV8
Ensembl:ENST00000541475 ArrayExpress:F5GXV8 Bgee:F5GXV8
Uniprot:F5GXV8
Length = 149
Score = 104 (41.7 bits), Expect = 2.5e-05, P = 2.5e-05
Identities = 28/104 (26%), Positives = 50/104 (48%)
Query: 14 SSSIESGTKLYISNLEYGVSNEDIKELFSEVGELKRCSVHFDRSGRSKGTAEVVLTRRAD 73
+++ E+ L++ NLE V+ E + ELF + G + + + D+ G+ K A V
Sbjct: 3 AAAAEADRTLFVGNLETKVTEELLFELFHQAGPVIKVKIPKDKDGKPKQFAFVNFKHEVS 62
Query: 74 AIAAVKRYNNVQLDGKPMKIEI-IGTNIGPPAAVLPITNVMYGN 116
A+ N ++L G+P+KI+ G++ P L GN
Sbjct: 63 VPYAMNLLNGIKLYGRPIKIQFRSGSSHAPQDVSLSYPQHHVGN 106
>ZFIN|ZDB-GENE-050306-51 [details] [associations]
symbol:rbm8a "RNA binding motif protein 8A"
species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0006396 "RNA processing"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0000184
"nuclear-transcribed mRNA catabolic process, nonsense-mediated
decay" evidence=IEA] [GO:0006417 "regulation of translation"
evidence=IEA] [GO:0006810 "transport" evidence=IEA] [GO:0051028
"mRNA transport" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA] [GO:0016607
"nuclear speck" evidence=IEA] InterPro:IPR000504 InterPro:IPR008111
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR01738 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-050306-51 GO:GO:0005737 GO:GO:0006417
GO:GO:0000184 GO:GO:0008380 GO:GO:0000166 GO:GO:0016607
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0051028
eggNOG:COG0724 GeneTree:ENSGT00550000074641 CTD:9939
HOGENOM:HOG000183826 KO:K12876 OMA:WILFVTS OrthoDB:EOG42822W
EMBL:BC090261 IPI:IPI00505312 RefSeq:NP_001013363.1
UniGene:Dr.76821 HSSP:Q9Y5S9 ProteinModelPortal:Q5D018 SMR:Q5D018
STRING:Q5D018 PRIDE:Q5D018 Ensembl:ENSDART00000018253 GeneID:503767
KEGG:dre:503767 InParanoid:Q5D018 NextBio:20866311 Bgee:Q5D018
Uniprot:Q5D018
Length = 174
Score = 107 (42.7 bits), Expect = 2.8e-05, P = 2.8e-05
Identities = 28/89 (31%), Positives = 49/89 (55%)
Query: 16 SIESGTKLYISNLEYGVSNEDIKELFSEVGELKRCSVHFDR-SGRSKGTAEVVLTRRADA 74
S+E G L+++ + + ED+ + F+E GE+K ++ DR +G KG A V +A
Sbjct: 69 SVE-GWILFVTGVHEEATEEDVHDKFAEFGEIKNLHLNLDRRTGYLKGYALVEYETYKEA 127
Query: 75 IAAVKRYNNVQLDGKPMKIEIIGTNIGPP 103
AA++ N +L G+P+ ++ GPP
Sbjct: 128 QAAMEGLNGQELMGQPISVDWCFVR-GPP 155
>TAIR|locus:2167649 [details] [associations]
symbol:CBP20 "CAP-binding protein 20" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=ISS] [GO:0000339 "RNA cap
binding" evidence=IDA] [GO:0016070 "RNA metabolic process"
evidence=TAS] [GO:0005845 "mRNA cap binding complex" evidence=TAS]
[GO:0000394 "RNA splicing, via endonucleolytic cleavage and
ligation" evidence=RCA;IMP] [GO:0031053 "primary miRNA processing"
evidence=IMP] [GO:0005515 "protein binding" evidence=IPI]
[GO:0000398 "mRNA splicing, via spliceosome" evidence=RCA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=RCA] [GO:0006366 "transcription from RNA polymerase II
promoter" evidence=RCA] [GO:0009086 "methionine biosynthetic
process" evidence=RCA] [GO:0030422 "production of siRNA involved in
RNA interference" evidence=RCA] [GO:0035196 "production of miRNAs
involved in gene silencing by miRNA" evidence=RCA] [GO:0043687
"post-translational protein modification" evidence=RCA] [GO:0045893
"positive regulation of transcription, DNA-dependent" evidence=RCA]
InterPro:IPR000504 InterPro:IPR012677 InterPro:IPR027157
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0005737 EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0000166
Gene3D:3.30.70.330 EMBL:AB005239 GO:GO:0005845 eggNOG:COG0724
GO:GO:0006370 GO:GO:0031053 GO:GO:0000339 HOGENOM:HOG000217589
PANTHER:PTHR18847 GO:GO:0000394 EMBL:AF140219 EMBL:BT004813
EMBL:AK227850 IPI:IPI00549008 RefSeq:NP_001078705.1
RefSeq:NP_199233.1 UniGene:At.23549 HSSP:P52298
ProteinModelPortal:Q9XFD1 SMR:Q9XFD1 IntAct:Q9XFD1 STRING:Q9XFD1
PaxDb:Q9XFD1 PRIDE:Q9XFD1 EnsemblPlants:AT5G44200.1
EnsemblPlants:AT5G44200.2 GeneID:834443 KEGG:ath:AT5G44200
TAIR:At5g44200 InParanoid:Q9XFD1 KO:K12883 OMA:YISGTIL
PhylomeDB:Q9XFD1 ProtClustDB:CLSN2687230 Genevestigator:Q9XFD1
Uniprot:Q9XFD1
Length = 257
Score = 110 (43.8 bits), Expect = 3.1e-05, P = 3.1e-05
Identities = 23/80 (28%), Positives = 45/80 (56%)
Query: 16 SIESGTKLYISNLEYGVSNEDIKELFSEVGELKRCSVHFDRSGRSK-GTAEVVLTRRADA 74
++ + T +YI N+ + + E + ELFS GE+K+ + D++ ++ G V+ R D
Sbjct: 29 ALRASTTVYIGNVSFYTTEEQLYELFSRAGEIKKIIMGLDKNTKTPCGFCFVLFYSREDT 88
Query: 75 IAAVKRYNNVQLDGKPMKIE 94
AVK + LD +P++++
Sbjct: 89 EDAVKYISGTILDDRPIRVD 108
>UNIPROTKB|H0YBQ4 [details] [associations]
symbol:PABPC1 "Polyadenylate-binding protein 1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AP001205 HGNC:HGNC:8554 ChiTaRS:PABPC1 Ensembl:ENST00000519596
Uniprot:H0YBQ4
Length = 258
Score = 110 (43.8 bits), Expect = 3.2e-05, P = 3.2e-05
Identities = 26/73 (35%), Positives = 37/73 (50%)
Query: 21 TKLYISNLEYGVSNEDIKELFSEVGELKRCSVHFDRSGRSKGTAEVVLTRRADAIAAVKR 80
T +YI N + +E +K+LF + G V D SG+SKG V R DA AV
Sbjct: 24 TNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDE 83
Query: 81 YNNVQLDGKPMKI 93
N +L+GK + +
Sbjct: 84 MNGKELNGKQIYV 96
>DICTYBASE|DDB_G0290745 [details] [associations]
symbol:pabpc1B "putative polyadenylate binding
protein (PABP)" species:44689 "Dictyostelium discoideum"
[GO:0003723 "RNA binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0008143 "poly(A) RNA binding" evidence=ISS]
[GO:0006378 "mRNA polyadenylation" evidence=ISS] [GO:0005737
"cytoplasm" evidence=IEA;ISS] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 dictyBase:DDB_G0290745 GO:GO:0005634 GO:GO:0005737
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0006378
GenomeReviews:CM000154_GR eggNOG:COG0724 EMBL:AAFI02000169
GO:GO:0008143 Gene3D:1.10.1900.10 SUPFAM:SSF63570
RefSeq:XP_001134510.1 ProteinModelPortal:Q1ZXC2 SMR:Q1ZXC2
EnsemblProtists:DDB0233386 GeneID:8627795 KEGG:ddi:DDB_G0290745
OMA:NAIASIH Uniprot:Q1ZXC2
Length = 814
Score = 111 (44.1 bits), Expect = 3.3e-05, Sum P(2) = 3.3e-05
Identities = 24/72 (33%), Positives = 38/72 (52%)
Query: 23 LYISNLEYGVSNEDIKELFSEVGELKRCSVHFDRSGRSKGTAEVVLTRRADAIAAVKRYN 82
+++ NLE GV N + + FS G + C V F++ G SKG V A A+++ N
Sbjct: 276 IFVKNLEKGVDNAMLYDTFSSFGNILSCKVEFEK-GISKGYGYVHFETNDSAEKAIEKVN 334
Query: 83 NVQLDGKPMKIE 94
+ GKP+ +E
Sbjct: 335 GTLILGKPINVE 346
Score = 35 (17.4 bits), Expect = 3.3e-05, Sum P(2) = 3.3e-05
Identities = 8/21 (38%), Positives = 14/21 (66%)
Query: 165 KPNLSVEDLDADLEKYHIEAK 185
KP ++VE + +E+Y +E K
Sbjct: 341 KP-INVERFVSKVERYKVENK 360
>UNIPROTKB|E1BTK3 [details] [associations]
symbol:ZCRB1 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0005689 "U12-type spliceosomal complex"
evidence=IEA] InterPro:IPR000504 InterPro:IPR001878
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00098 PROSITE:PS50102
PROSITE:PS50158 SMART:SM00343 SMART:SM00360 GO:GO:0000166
GO:GO:0046872 GO:GO:0008270 Gene3D:3.30.70.330 GO:GO:0003676
Gene3D:4.10.60.10 GO:GO:0005689 GeneTree:ENSGT00600000084414
CTD:85437 KO:K13154 OMA:RXVTIMK EMBL:AADN02010031 IPI:IPI00592809
RefSeq:XP_416034.1 ProteinModelPortal:E1BTK3
Ensembl:ENSGALT00000015532 GeneID:417791 KEGG:gga:417791
NextBio:20821039 Uniprot:E1BTK3
Length = 216
Score = 109 (43.4 bits), Expect = 3.4e-05, P = 3.4e-05
Identities = 24/78 (30%), Positives = 45/78 (57%)
Query: 19 SGTKLYISNLEYGVSNEDIKELFSEVGELKRCSVHFDRSGR-SKGTAEVVLTRRADAIAA 77
S + +Y+SNL + ++N D+ +FS+ G++ + ++ D+ R SKG A ++ + A
Sbjct: 8 SKSTVYVSNLPFALTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKESAQNC 67
Query: 78 VKRYNNVQLDGKPMKIEI 95
+ NN QL G+ +K I
Sbjct: 68 SRALNNKQLFGRVIKASI 85
>FB|FBgn0027841 [details] [associations]
symbol:CstF-64 "Cleavage stimulation factor 64 kilodalton
subunit" species:7227 "Drosophila melanogaster" [GO:0006379 "mRNA
cleavage" evidence=ISS;NAS] [GO:0005848 "mRNA cleavage stimulating
factor complex" evidence=ISS;NAS] [GO:0003729 "mRNA binding"
evidence=ISS] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0022008
"neurogenesis" evidence=IMP] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0022008
GO:GO:0000166 GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0006379
InterPro:IPR025742 InterPro:IPR026896 Pfam:PF14327 Pfam:PF14304
HSSP:P33240 GO:GO:0005848 EMBL:BT004860 ProteinModelPortal:Q86NL1
SMR:Q86NL1 STRING:Q86NL1 PRIDE:Q86NL1 FlyBase:FBgn0027841
InParanoid:Q86NL1 OrthoDB:EOG4FBG8R ChiTaRS:CstF-64
ArrayExpress:Q86NL1 Bgee:Q86NL1 Uniprot:Q86NL1
Length = 437
Score = 112 (44.5 bits), Expect = 3.4e-05, P = 3.4e-05
Identities = 22/78 (28%), Positives = 45/78 (57%)
Query: 18 ESGTKLYISNLEYGVSNEDIKELFSEVGELKRCSVHFDR-SGRSKGTAEVVLTRRADAIA 76
+S +++ N+ Y + E +KE+FSEVG + + FDR SG+ KG + A++
Sbjct: 13 KSMRSVFVGNIPYEATEEKLKEIFSEVGPVLSLKLVFDRESGKPKGFGFCEYKDQETALS 72
Query: 77 AVKRYNNVQLDGKPMKIE 94
A++ N ++ G+ ++++
Sbjct: 73 AMRNLNGYEIGGRTLRVD 90
>FB|FBgn0035016 [details] [associations]
symbol:CG4612 species:7227 "Drosophila melanogaster"
[GO:0008143 "poly(A) RNA binding" evidence=ISS] [GO:0003729 "mRNA
binding" evidence=ISS] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 EMBL:AE013599 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0008143 HSSP:P11940 eggNOG:NOG246493
GeneTree:ENSGT00630000089747 EMBL:AY060413 RefSeq:NP_001246492.1
RefSeq:NP_001246493.1 RefSeq:NP_611924.1 UniGene:Dm.773 SMR:Q9W158
IntAct:Q9W158 MINT:MINT-870450 STRING:Q9W158
EnsemblMetazoa:FBtr0072346 EnsemblMetazoa:FBtr0306137 GeneID:37914
KEGG:dme:Dmel_CG4612 UCSC:CG4612-RA FlyBase:FBgn0035016
InParanoid:Q9W158 OMA:EPYGRIT OrthoDB:EOG4KPRS4 GenomeRNAi:37914
NextBio:806022 Uniprot:Q9W158
Length = 307
Score = 110 (43.8 bits), Expect = 4.6e-05, P = 4.6e-05
Identities = 26/83 (31%), Positives = 45/83 (54%)
Query: 14 SSSIESGTKLYISNLEYGVSNEDIKELFSEVGELKRCSVHFDRSGRSKGTAEVVLTRRAD 73
+SS +SG K+YI NLE + N+ + + FS G + C+V D G S+G V
Sbjct: 107 NSSPDSG-KIYIKNLERSIDNKAVYDTFSVFGNILNCNVAKDEDGNSRGYGFVHFDSEEA 165
Query: 74 AIAAVKRYNNVQLDGKPMKIEII 96
A AA+++ N + + + K+ ++
Sbjct: 166 ARAAIEKVNGMLCNNQ--KVHVV 186
>UNIPROTKB|H0Y5F5 [details] [associations]
symbol:PABPC4 "Polyadenylate-binding protein 4"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IDA] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
EMBL:AL365277 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 EMBL:AL845289 HGNC:HGNC:8557 ChiTaRS:PABPC4
Ensembl:ENST00000421687 Uniprot:H0Y5F5
Length = 550
Score = 112 (44.5 bits), Expect = 4.8e-05, P = 4.8e-05
Identities = 26/69 (37%), Positives = 37/69 (53%)
Query: 21 TKLYISNLEYGVSNEDIKELFSEVGELKRCSVHFDRSGRSKGTAEVVLTRRADAIAAVKR 80
T +YI N V +E +KELFS+ G+ V D +G+SKG V + DA AV+
Sbjct: 93 TNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPNGKSKGFGFVSYEKHEDANKAVEE 152
Query: 81 YNNVQLDGK 89
N ++ GK
Sbjct: 153 MNGKEISGK 161
>UNIPROTKB|I3L8K8 [details] [associations]
symbol:I3L8K8 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00690000102191 EMBL:CT956011
Ensembl:ENSSSCT00000026978 OMA:HRISVAF Uniprot:I3L8K8
Length = 87
Score = 96 (38.9 bits), Expect = 5.0e-05, P = 5.0e-05
Identities = 22/81 (27%), Positives = 39/81 (48%)
Query: 14 SSSIESGTKLYISNLEYGVSNEDIKELFSEVGELKRCSVHFDRSGRSKGTAEVVLTRRAD 73
S+ E+ +++ NLE V E + ELF + G L + ++ DR G K V
Sbjct: 3 SAQEEADRTVFVGNLEARVREEILYELFLQAGPLTKVTICKDRDGNPKSFGFVCFKHPES 62
Query: 74 AIAAVKRYNNVQLDGKPMKIE 94
A+ N ++L G+P+ ++
Sbjct: 63 VSYAIALLNGIRLYGRPINVQ 83
>UNIPROTKB|D4AC21 [details] [associations]
symbol:Pabpc4 "Protein Pabpc4" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 EMBL:AC114512 IPI:IPI00365233
ProteinModelPortal:D4AC21 Ensembl:ENSRNOT00000021032
ArrayExpress:D4AC21 Uniprot:D4AC21
Length = 588
Score = 112 (44.5 bits), Expect = 5.2e-05, P = 5.2e-05
Identities = 26/69 (37%), Positives = 38/69 (55%)
Query: 21 TKLYISNLEYGVSNEDIKELFSEVGELKRCSVHFDRSGRSKGTAEVVLTRRADAIAAVKR 80
T +YI N V +E+++ELFS+ G+ V D SG+SKG V + DA AV+
Sbjct: 120 TNVYIKNFGEEVDDENLRELFSQFGKTLSVKVMRDCSGKSKGFGFVSYEKHEDANKAVEE 179
Query: 81 YNNVQLDGK 89
N ++ GK
Sbjct: 180 MNGKEMSGK 188
>UNIPROTKB|I3L521 [details] [associations]
symbol:I3L521 "Uncharacterized protein" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AP002373
Ensembl:ENST00000544347 Uniprot:I3L521
Length = 148
Score = 102 (41.0 bits), Expect = 5.3e-05, P = 5.3e-05
Identities = 28/100 (28%), Positives = 47/100 (47%)
Query: 18 ESGTKLYISNLEYGVSNEDIKELFSEVGELKRCSVHFDRSGRSKGTAEVVLTRRADAIAA 77
E+ L++ NLE V+ E + ELF + G + + + D+ G+ K A V A
Sbjct: 4 EADRTLFVGNLETKVTEELLFELFHQAGPVIKVKIPKDKDGKPKQFAFVNFKHEVSVPYA 63
Query: 78 VKRYNNVQLDGKPMKIEI-IGTNIGPPAAVLPITNVMYGN 116
+ N ++L G+P+KI+ G++ P L GN
Sbjct: 64 MNLLNGIKLYGRPIKIQFRSGSSHAPQDVSLSYPQHHVGN 103
>UNIPROTKB|B1ANR0 [details] [associations]
symbol:PABPC4 "Polyadenylate-binding protein 4"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0000166
EMBL:CH471059 Gene3D:3.30.70.330 GO:GO:0003723 EMBL:AL365277
HOVERGEN:HBG002295 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 EMBL:AL845289
UniGene:Hs.169900 HGNC:HGNC:8557 ChiTaRS:PABPC4 IPI:IPI00642944
SMR:B1ANR0 STRING:B1ANR0 Ensembl:ENST00000372862 Uniprot:B1ANR0
Length = 615
Score = 112 (44.5 bits), Expect = 5.5e-05, P = 5.5e-05
Identities = 26/69 (37%), Positives = 37/69 (53%)
Query: 21 TKLYISNLEYGVSNEDIKELFSEVGELKRCSVHFDRSGRSKGTAEVVLTRRADAIAAVKR 80
T +YI N V +E +KELFS+ G+ V D +G+SKG V + DA AV+
Sbjct: 191 TNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPNGKSKGFGFVSYEKHEDANKAVEE 250
Query: 81 YNNVQLDGK 89
N ++ GK
Sbjct: 251 MNGKEISGK 259
>UNIPROTKB|P52299 [details] [associations]
symbol:ncbp2 "Nuclear cap-binding protein subunit 2"
species:8355 "Xenopus laevis" [GO:0000184 "nuclear-transcribed mRNA
catabolic process, nonsense-mediated decay" evidence=ISS]
[GO:0000340 "RNA 7-methylguanosine cap binding" evidence=ISS]
[GO:0005634 "nucleus" evidence=ISS] [GO:0005654 "nucleoplasm"
evidence=ISS] [GO:0005737 "cytoplasm" evidence=ISS] [GO:0005845
"mRNA cap binding complex" evidence=ISS] [GO:0006370
"7-methylguanosine mRNA capping" evidence=ISS] [GO:0006408 "snRNA
export from nucleus" evidence=IDA] [GO:0006446 "regulation of
translational initiation" evidence=ISS] [GO:0008380 "RNA splicing"
evidence=IDA] [GO:0045292 "mRNA cis splicing, via spliceosome"
evidence=ISS] [GO:0046833 "positive regulation of RNA export from
nucleus" evidence=IDA] [GO:0003723 "RNA binding" evidence=ISS]
InterPro:IPR000504 InterPro:IPR012677 InterPro:IPR027157
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005737
GO:GO:0005654 GO:GO:0000184 GO:GO:0000166 GO:GO:0006446
Gene3D:3.30.70.330 GO:GO:0031047 GO:GO:0005845 GO:GO:0000340
GO:GO:0051028 GO:GO:0006370 GO:GO:0045292 HOVERGEN:HBG052581
PANTHER:PTHR18847 KO:K12883 CTD:22916 GO:GO:0046833 GO:GO:0006408
EMBL:BC072902 EMBL:X84788 PIR:I51602 RefSeq:NP_001167476.1
UniGene:Xl.43439 UniGene:Xl.81730 ProteinModelPortal:P52299
SMR:P52299 GeneID:100380998 KEGG:xla:100380998
Xenbase:XB-GENE-1005792 Uniprot:P52299
Length = 153
Score = 103 (41.3 bits), Expect = 5.6e-05, P = 5.6e-05
Identities = 25/83 (30%), Positives = 45/83 (54%)
Query: 13 RSSSIESGTKLYISNLEYGVSNEDIKELFSEVGELKRCSVHFDRSGRSK-GTAEVVLTRR 71
+ S ++ LY+ NL + + E I ELFS+ G++KR + D+ ++ G V R
Sbjct: 29 QESLLKQSCTLYVGNLSFYTTEEQIHELFSKSGDVKRIVMGLDKVKKTACGFCFVEYYTR 88
Query: 72 ADAIAAVKRYNNVQLDGKPMKIE 94
ADA A++ N +LD + ++ +
Sbjct: 89 ADAEQAMRFINGTRLDDRIVRTD 111
>CGD|CAL0001392 [details] [associations]
symbol:orf19.3037 species:5476 "Candida albicans" [GO:0010494
"cytoplasmic stress granule" evidence=IEA] [GO:0005840 "ribosome"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0005829
"cytosol" evidence=IEA] [GO:0006406 "mRNA export from nucleus"
evidence=IEA] [GO:0006446 "regulation of translational initiation"
evidence=IEA] [GO:0060211 "regulation of nuclear-transcribed mRNA
poly(A) tail shortening" evidence=IEA] [GO:0008143 "poly(A) RNA
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 CGD:CAL0001392
GO:GO:0005634 GO:GO:0005737 EMBL:AACQ01000017 EMBL:AACQ01000015
GO:GO:0006417 GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0051028 eggNOG:COG0724 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628 HSSP:P11940
RefSeq:XP_721264.1 RefSeq:XP_721535.1 ProteinModelPortal:Q5AI15
SMR:Q5AI15 STRING:Q5AI15 PRIDE:Q5AI15 GeneID:3636891 GeneID:3637079
KEGG:cal:CaO19.10555 KEGG:cal:CaO19.3037 Uniprot:Q5AI15
Length = 629
Score = 112 (44.5 bits), Expect = 5.7e-05, P = 5.7e-05
Identities = 22/76 (28%), Positives = 39/76 (51%)
Query: 20 GTKLYISNLEYGVSNEDIKELFSEVGELKRCSVHFDRSGRSKGTAEVVLTRRADAIAAVK 79
G L++ NL+ + +E ++E F G + V D +G+SKG V T +A A+
Sbjct: 335 GVNLFVKNLDDTIDSEKLEEEFKPFGTITSAKVMVDEAGKSKGFGFVCFTTPEEATKAIT 394
Query: 80 RYNNVQLDGKPMKIEI 95
N ++GKP+ + +
Sbjct: 395 EMNTRMINGKPLYVAL 410
Score = 107 (42.7 bits), Expect = 0.00049, P = 0.00049
Identities = 25/96 (26%), Positives = 47/96 (48%)
Query: 2 IFNGXXXXXXXRSSSIE----SGTKLYISNLEYGVSNEDIKELFSEVGELKRCSVHFDRS 57
+F G R S E + T +Y+ N++ S E ++LFS G++ + D+
Sbjct: 210 VFVGKHISKKDRESKFEEMKANFTNIYVKNIDLNYSEESFEKLFSPFGKITSIYLEKDQD 269
Query: 58 GRSKGTAEVVLTRRADAIAAVKRYNNVQLDGKPMKI 93
G+SKG V A+ AV+ N+ +++G+ + +
Sbjct: 270 GKSKGFGFVNFEDHESAVKAVEELNDKEINGQKIYV 305
>UNIPROTKB|D4AC14 [details] [associations]
symbol:Pabpc4 "Protein Pabpc4" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 EMBL:AC114512 IPI:IPI00204295 PRIDE:D4AC14
Ensembl:ENSRNOT00000021045 ArrayExpress:D4AC14 Uniprot:D4AC14
Length = 631
Score = 112 (44.5 bits), Expect = 5.7e-05, P = 5.7e-05
Identities = 26/69 (37%), Positives = 38/69 (55%)
Query: 21 TKLYISNLEYGVSNEDIKELFSEVGELKRCSVHFDRSGRSKGTAEVVLTRRADAIAAVKR 80
T +YI N V +E+++ELFS+ G+ V D SG+SKG V + DA AV+
Sbjct: 191 TNVYIKNFGEEVDDENLRELFSQFGKTLSVKVMRDCSGKSKGFGFVSYEKHEDANKAVEE 250
Query: 81 YNNVQLDGK 89
N ++ GK
Sbjct: 251 MNGKEMSGK 259
>DICTYBASE|DDB_G0294559 [details] [associations]
symbol:DDB_G0294559 "RNA-binding region RNP-1
domain-containing protein" species:44689 "Dictyostelium discoideum"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0008150 "biological_process"
evidence=ND] [GO:0005575 "cellular_component" evidence=ND]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 dictyBase:DDB_G0294559 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724 KO:K13107
EMBL:AAFI02000058 OMA:VFSQNRY RefSeq:XP_001134546.1
ProteinModelPortal:Q1ZXF8 EnsemblProtists:DDB0232419 GeneID:8624369
KEGG:ddi:DDB_G0294559 ProtClustDB:CLSZ2847454 Uniprot:Q1ZXF8
Length = 348
Score = 110 (43.8 bits), Expect = 5.8e-05, P = 5.8e-05
Identities = 22/73 (30%), Positives = 40/73 (54%)
Query: 23 LYISNLEYGVSNEDIKELFSEVGELKRCS-VHFDRSGRSKGTAEVVLTRRADAIAAVKRY 81
+Y+ L Y ++ D+ +FS+ GE+ C+ V +GRS+G V ++ + AV
Sbjct: 35 IYVGGLNYDLNEGDVIAIFSQYGEISECNLVRNKETGRSQGFCFVGYDQQKSTVLAVDNL 94
Query: 82 NNVQLDGKPMKIE 94
N + L GK +K++
Sbjct: 95 NGINLLGKTIKVD 107
>UNIPROTKB|Q13310 [details] [associations]
symbol:PABPC4 "Polyadenylate-binding protein 4"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0030529 "ribonucleoprotein complex" evidence=IDA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005737 "cytoplasm"
evidence=IDA] [GO:0008143 "poly(A) RNA binding" evidence=IDA]
[GO:0008266 "poly(U) RNA binding" evidence=IDA] [GO:0010494
"cytoplasmic stress granule" evidence=IDA] [GO:0017130 "poly(C) RNA
binding" evidence=IDA] [GO:0006401 "RNA catabolic process"
evidence=TAS] [GO:0006396 "RNA processing" evidence=TAS]
[GO:0006412 "translation" evidence=TAS] [GO:0007596 "blood
coagulation" evidence=TAS] [GO:0005515 "protein binding"
evidence=IPI] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0005634 GO:GO:0008266 GO:GO:0000166 EMBL:CH471059
GO:GO:0006412 GO:GO:0007596 Gene3D:3.30.70.330 GO:GO:0006401
GO:GO:0006396 GO:GO:0010494 EMBL:AL365277 eggNOG:COG0724
GO:GO:0008143 HOVERGEN:HBG002295 KO:K13126 Gene3D:1.10.1900.10
SUPFAM:SSF63570 TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 EMBL:U33818
EMBL:U75686 EMBL:AL845289 EMBL:BC065540 EMBL:BC094755
IPI:IPI00012726 IPI:IPI00555747 IPI:IPI00642904
RefSeq:NP_001129125.1 RefSeq:NP_001129126.1 RefSeq:NP_003810.1
UniGene:Hs.169900 ProteinModelPortal:Q13310 SMR:Q13310
IntAct:Q13310 MINT:MINT-1189867 STRING:Q13310 PhosphoSite:Q13310
DMDM:12229875 PaxDb:Q13310 PRIDE:Q13310 Ensembl:ENST00000372856
Ensembl:ENST00000372857 Ensembl:ENST00000372858 GeneID:8761
KEGG:hsa:8761 UCSC:uc001cdm.2 UCSC:uc010oiv.1 CTD:8761
GeneCards:GC01M040026 HGNC:HGNC:8557 HPA:HPA027301 MIM:603407
neXtProt:NX_Q13310 PharmGKB:PA32883 OMA:XVVCDEN OrthoDB:EOG4T1HM1
PhylomeDB:Q13310 ChEMBL:CHEMBL5333 ChiTaRS:PABPC4 GenomeRNAi:8761
NextBio:32864 ArrayExpress:Q13310 Bgee:Q13310 CleanEx:HS_PABPC4
Genevestigator:Q13310 GermOnline:ENSG00000090621 Uniprot:Q13310
Length = 644
Score = 112 (44.5 bits), Expect = 5.9e-05, P = 5.9e-05
Identities = 26/69 (37%), Positives = 37/69 (53%)
Query: 21 TKLYISNLEYGVSNEDIKELFSEVGELKRCSVHFDRSGRSKGTAEVVLTRRADAIAAVKR 80
T +YI N V +E +KELFS+ G+ V D +G+SKG V + DA AV+
Sbjct: 191 TNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPNGKSKGFGFVSYEKHEDANKAVEE 250
Query: 81 YNNVQLDGK 89
N ++ GK
Sbjct: 251 MNGKEISGK 259
>UNIPROTKB|G3V9N0 [details] [associations]
symbol:Pabpc4 "RCG31475, isoform CRA_a" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 EMBL:CH473968 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 EMBL:AC114512 GeneTree:ENSGT00640000091232
OMA:XVVCDEN PRIDE:G3V9N0 Ensembl:ENSRNOT00000056592 Uniprot:G3V9N0
Length = 660
Score = 112 (44.5 bits), Expect = 6.1e-05, P = 6.1e-05
Identities = 26/69 (37%), Positives = 38/69 (55%)
Query: 21 TKLYISNLEYGVSNEDIKELFSEVGELKRCSVHFDRSGRSKGTAEVVLTRRADAIAAVKR 80
T +YI N V +E+++ELFS+ G+ V D SG+SKG V + DA AV+
Sbjct: 191 TNVYIKNFGEEVDDENLRELFSQFGKTLSVKVMRDCSGKSKGFGFVSYEKHEDANKAVEE 250
Query: 81 YNNVQLDGK 89
N ++ GK
Sbjct: 251 MNGKEMSGK 259
>UNIPROTKB|I3LLT9 [details] [associations]
symbol:ZCRB1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005689 "U12-type spliceosomal complex" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0005689
GeneTree:ENSGT00600000084414 EMBL:CU915556
Ensembl:ENSSSCT00000027399 OMA:SINGKEM Uniprot:I3LLT9
Length = 94
Score = 95 (38.5 bits), Expect = 6.3e-05, P = 6.3e-05
Identities = 20/69 (28%), Positives = 40/69 (57%)
Query: 19 SGTKLYISNLEYGVSNEDIKELFSEVGELKRCSVHFDRSGR-SKGTAEVVLTRRADAIAA 77
S + +Y+SNL + ++N D+ +FS+ G++ + ++ D+ R SKG A ++ + A
Sbjct: 8 SKSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNC 67
Query: 78 VKRYNNVQL 86
+ NN Q+
Sbjct: 68 TRAINNKQV 76
>UNIPROTKB|Q2KGN9 [details] [associations]
symbol:MGCH7_ch7g296 "Putative uncharacterized protein"
species:242507 "Magnaporthe oryzae 70-15" [GO:0005575
"cellular_component" evidence=ND] [GO:0043581 "mycelium
development" evidence=IEP] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0043581 EMBL:CM000230
ProteinModelPortal:Q2KGN9 Uniprot:Q2KGN9
Length = 375
Score = 110 (43.8 bits), Expect = 6.6e-05, P = 6.6e-05
Identities = 21/79 (26%), Positives = 45/79 (56%)
Query: 19 SGTKLY-ISNLEYGVSNEDIKELFSEVGELKRCSVHFDRSGRSKGTAEVVLTRRADAIAA 77
SG +L I L V+ + ++++F + GE++ + +R G ++GTA ++ + DA +A
Sbjct: 140 SGFRLIVIERLTKNVTEDHLRDIFGQYGEIRDLDLPINRQGTNRGTAYILYVQEPDAESA 199
Query: 78 VKRYNNVQLDGKPMKIEII 96
+ + Q+DG + + I+
Sbjct: 200 IAHMHEGQIDGATVNVSIV 218
>DICTYBASE|DDB_G0286007 [details] [associations]
symbol:rbm8A "RNA-binding motif protein 8A"
species:44689 "Dictyostelium discoideum" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 dictyBase:DDB_G0286007
GenomeReviews:CM000153_GR GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 KO:K12876 EMBL:AAFI02000084 eggNOG:NOG246776
RefSeq:XP_637941.1 ProteinModelPortal:Q54ME8 SMR:Q54ME8
STRING:Q54ME8 EnsemblProtists:DDB0233616 GeneID:8625394
KEGG:ddi:DDB_G0286007 InParanoid:Q54ME8 OMA:SERYSGK Uniprot:Q54ME8
Length = 187
Score = 106 (42.4 bits), Expect = 6.7e-05, P = 6.7e-05
Identities = 23/80 (28%), Positives = 48/80 (60%)
Query: 16 SIESGTKLYISNLEYGVSNEDIKELFSEVGELKRCSVHFDR-SGRSKGTAEVVLTRRADA 74
SIE G +++ N++ V D+ ++F+E G++K ++ DR +G +KG A + +R++A
Sbjct: 67 SIE-GWIIFVRNIQEEVQEPDLMDIFAEYGQIKNIHLNIDRRTGFTKGYALIEYEKRSEA 125
Query: 75 IAAVKRYNNVQLDGKPMKIE 94
A+K + +L G + ++
Sbjct: 126 EDAIKNGSGYELAGLKLSVD 145
>CGD|CAL0003946 [details] [associations]
symbol:orf19.1389 species:5476 "Candida albicans" [GO:0005737
"cytoplasm" evidence=IEA] [GO:0016071 "mRNA metabolic process"
evidence=IEA] [GO:0008143 "poly(A) RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 CGD:CAL0003946 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 eggNOG:COG0724 EMBL:AACQ01000101 KO:K14396
RefSeq:XP_714561.1 ProteinModelPortal:Q59YD7 GeneID:3643794
KEGG:cal:CaO19.1389 Uniprot:Q59YD7
Length = 163
Score = 104 (41.7 bits), Expect = 7.0e-05, P = 7.0e-05
Identities = 22/82 (26%), Positives = 43/82 (52%)
Query: 20 GTKLYISNLEYGVSNEDIKELFSEVGELKRCSVHFDR-SGRSKGTAEVVLTRRADAIAAV 78
G +Y+ N++Y + E ++E F VG ++R ++ FDR SG KG A + + A+
Sbjct: 27 GRSVYVGNVDYQSTPEQLEEFFHGVGVIERVTILFDRFSGLPKGYAYIEFEQTESVQKAI 86
Query: 79 KRYNNVQLDGKPMKIEIIGTNI 100
+ + G+ +++ TN+
Sbjct: 87 DELHGKEFRGRELRVTAKRTNL 108
>UNIPROTKB|Q83D11 [details] [associations]
symbol:CBU_0935 "RNA binding protein" species:227377
"Coxiella burnetii RSA 493" [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:AE016828 GenomeReviews:AE016828_GR HSSP:Q9V535
RefSeq:NP_819948.1 ProteinModelPortal:Q83D11 GeneID:1208828
KEGG:cbu:CBU_0935 PATRIC:17930577 HOGENOM:HOG000026939 OMA:QVHSANI
ProtClustDB:CLSK914425 BioCyc:CBUR227377:GJ7S-926-MONOMER
Uniprot:Q83D11
Length = 129
Score = 94 (38.1 bits), Expect = 8.1e-05, P = 8.1e-05
Identities = 23/80 (28%), Positives = 41/80 (51%)
Query: 18 ESGTKLYISNLEYGVSNEDIKELFSEVGELKRCSV--HFDRSGRSKGTAEVVLTRRADAI 75
++ ++Y+ NL Y V D+ + FS G ++ + +F R+GRSKG A V A+
Sbjct: 41 DNNDQIYVGNLPYHVVENDLHQYFSRFGAIESVKIVRNF-RTGRSKGYAFVTYVTPKQAV 99
Query: 76 AAVKRYNNVQLDGKPMKIEI 95
A+ + L G+ + + I
Sbjct: 100 KALDAHGK-DLQGRSLVVRI 118
>TIGR_CMR|CBU_0935 [details] [associations]
symbol:CBU_0935 "RNA-binding protein" species:227377
"Coxiella burnetii RSA 493" [GO:0008150 "biological_process"
evidence=ND] [GO:0003723 "RNA binding" evidence=ISS]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AE016828 GenomeReviews:AE016828_GR HSSP:Q9V535
RefSeq:NP_819948.1 ProteinModelPortal:Q83D11 GeneID:1208828
KEGG:cbu:CBU_0935 PATRIC:17930577 HOGENOM:HOG000026939 OMA:QVHSANI
ProtClustDB:CLSK914425 BioCyc:CBUR227377:GJ7S-926-MONOMER
Uniprot:Q83D11
Length = 129
Score = 94 (38.1 bits), Expect = 8.1e-05, P = 8.1e-05
Identities = 23/80 (28%), Positives = 41/80 (51%)
Query: 18 ESGTKLYISNLEYGVSNEDIKELFSEVGELKRCSV--HFDRSGRSKGTAEVVLTRRADAI 75
++ ++Y+ NL Y V D+ + FS G ++ + +F R+GRSKG A V A+
Sbjct: 41 DNNDQIYVGNLPYHVVENDLHQYFSRFGAIESVKIVRNF-RTGRSKGYAFVTYVTPKQAV 99
Query: 76 AAVKRYNNVQLDGKPMKIEI 95
A+ + L G+ + + I
Sbjct: 100 KALDAHGK-DLQGRSLVVRI 118
>TAIR|locus:2119505 [details] [associations]
symbol:AT4G13860 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005575 "cellular_component" evidence=ND] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002687 GenomeReviews:CT486007_GR GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 HSSP:P19339 HOGENOM:HOG000276232
UniGene:At.33330 EMBL:BT014844 IPI:IPI00523584 RefSeq:NP_193122.2
ProteinModelPortal:Q6ID29 SMR:Q6ID29 PRIDE:Q6ID29
EnsemblPlants:AT4G13860.1 GeneID:827020 KEGG:ath:AT4G13860
TAIR:At4g13860 InParanoid:Q6ID29 OMA:KIEEMFL PhylomeDB:Q6ID29
Genevestigator:Q6ID29 Uniprot:Q6ID29
Length = 87
Score = 94 (38.1 bits), Expect = 8.1e-05, P = 8.1e-05
Identities = 22/78 (28%), Positives = 44/78 (56%)
Query: 21 TKLYISNLEYGVSNEDIKELFSEVGELKRCSVHFDR-SGRSKGTAEVVLTRRADAIAAVK 79
T++Y+ NL +++ ++E FS G + V DR + RS+G V + ++A AAV
Sbjct: 3 TRVYVGNLSPTTTDDMLREAFSGYGNVVDAIVMRDRYTDRSRGFGFVTYSSHSEAEAAVS 62
Query: 80 RYNNVQLDGKPMKIEIIG 97
+ +L+G+ + +++ G
Sbjct: 63 GMDGKELNGRRVSVKLFG 80
>UNIPROTKB|G4N872 [details] [associations]
symbol:MGG_06296 "Nuclear cap-binding protein subunit 2"
species:242507 "Magnaporthe oryzae 70-15" [GO:0005575
"cellular_component" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR000504 InterPro:IPR012677
InterPro:IPR027157 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0000398 EMBL:CM001234
GO:GO:0000243 GO:GO:0000339 PANTHER:PTHR18847 GO:GO:0005846
KO:K12883 RefSeq:XP_003717292.1 ProteinModelPortal:G4N872
SMR:G4N872 EnsemblFungi:MGG_06296T0 GeneID:2684451
KEGG:mgr:MGG_06296 Uniprot:G4N872
Length = 185
Score = 105 (42.0 bits), Expect = 9.0e-05, P = 9.0e-05
Identities = 24/80 (30%), Positives = 42/80 (52%)
Query: 17 IESGTKLYISNLEYGVSNEDIKELFSEVGELKRCSVHFDRSGRSK-GTAEVVLTRRADAI 75
+ + T LY+ NL + + E + ELFS+ GE+KR + DR ++ G V DAI
Sbjct: 44 LANSTTLYVGNLSFYTTEEQVYELFSKCGEIKRLVMGLDRFNKTPCGFCFVEYYTHQDAI 103
Query: 76 AAVKRYNNVQLDGKPMKIEI 95
+K +LD + ++ ++
Sbjct: 104 DCMKYIGGTKLDERVIRTDL 123
>ZFIN|ZDB-GENE-040426-1811 [details] [associations]
symbol:zgc:77262 "zgc:77262" species:7955 "Danio
rerio" [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-040426-1811 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 HSSP:P19339 HOVERGEN:HBG002295 eggNOG:NOG294108
GeneTree:ENSGT00390000020883 EMBL:BX530031 EMBL:BC065633
IPI:IPI00497767 RefSeq:NP_991217.1 UniGene:Dr.6046
Ensembl:ENSDART00000065402 Ensembl:ENSDART00000145013 GeneID:402952
KEGG:dre:402952 InParanoid:Q6P0G2 OMA:HMAKERE NextBio:20816762
Uniprot:Q6P0G2
Length = 331
Score = 109 (43.4 bits), Expect = 9.1e-05, P = 9.1e-05
Identities = 25/96 (26%), Positives = 49/96 (51%)
Query: 4 NGXXXXXXXRSSSIESGTKLYISNLEYGVSNEDIKELFSEVGELKRCSVHFDRSGRSKGT 63
NG ++ + + TK+Y+ N+ GV+ IKELF G++ C + K
Sbjct: 61 NGSRITVEYATTKVRNATKIYVGNVPEGVAAAKIKELFQPFGKVVECDI-------VKNY 113
Query: 64 AEVVLTRRADAIAAVKRYNNVQLDGKPMKIEIIGTN 99
A V + R +A+ A+ + N+ ++DG+ + + + +N
Sbjct: 114 AFVHMQRENEALDAIAKLNHSKVDGQKIFVSLSRSN 149
>UNIPROTKB|F1NPM7 [details] [associations]
symbol:TRA2A "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0000398 "mRNA splicing,
via spliceosome" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 GO:GO:0000398 GeneTree:ENSGT00700000104309
OMA:DRYEEYD EMBL:AADN02000941 EMBL:AADN02000942 IPI:IPI00590713
Ensembl:ENSGALT00000017877 Uniprot:F1NPM7
Length = 277
Score = 108 (43.1 bits), Expect = 9.3e-05, P = 9.3e-05
Identities = 25/78 (32%), Positives = 45/78 (57%)
Query: 18 ESGTKLYISNLEYGVSNEDIKELFSEVGELKRCSVHFD-RSGRSKGTAEVVLTRRADAIA 76
+ T L + L + D++E+FS G L +V +D R+GRS+G A V R D+
Sbjct: 118 DPNTCLGVFGLSLYTTERDLREVFSRYGPLTGVNVVYDQRTGRSRGFAFVYFERIDDSKE 177
Query: 77 AVKRYNNVQLDGKPMKIE 94
A++ N ++LDG+ ++++
Sbjct: 178 AMEHANGMELDGRRIRVD 195
>RGD|1311201 [details] [associations]
symbol:Pabpc6 "poly(A) binding protein, cytoplasmic 6"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 RGD:1311201
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 eggNOG:COG0724
HOVERGEN:HBG002295 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 HOGENOM:HOG000217922
GeneTree:ENSGT00640000091232 EMBL:CH474059 EMBL:BC168959
IPI:IPI00214614 RefSeq:NP_001099678.1 UniGene:Rn.108830
MINT:MINT-7138834 Ensembl:ENSRNOT00000023319 GeneID:292295
KEGG:rno:292295 CTD:67543 OMA:HEDARKA OrthoDB:EOG41G360
NextBio:633994 Genevestigator:B5DF80 Uniprot:B5DF80
Length = 643
Score = 111 (44.1 bits), Expect = 9.4e-05, P = 9.4e-05
Identities = 27/73 (36%), Positives = 37/73 (50%)
Query: 21 TKLYISNLEYGVSNEDIKELFSEVGELKRCSVHFDRSGRSKGTAEVVLTRRADAIAAVKR 80
T +YI NL + +E +++LFS G V D SG+SKG V R DA AV
Sbjct: 191 TNVYIKNLGEDMDDERLQDLFSRFGPALSVKVMTDESGKSKGFGFVSFERHEDARKAVDE 250
Query: 81 YNNVQLDGKPMKI 93
N L+GK + +
Sbjct: 251 MNGKDLNGKQIYV 263
>UNIPROTKB|Q3ZC44 [details] [associations]
symbol:HNRNPAB "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0030529
eggNOG:COG0724 HOGENOM:HOG000234441 HOVERGEN:HBG002295
GeneTree:ENSGT00700000104347 KO:K13044 InterPro:IPR012956
Pfam:PF08143 CTD:3182 OMA:FILFKDP EMBL:DAAA02020063
EMBL:DAAA02020062 EMBL:BC102923 IPI:IPI00843025
RefSeq:NP_001035612.1 UniGene:Bt.58979 SMR:Q3ZC44
Ensembl:ENSBTAT00000018114 GeneID:513410 KEGG:bta:513410
NextBio:20870841 Uniprot:Q3ZC44
Length = 285
Score = 108 (43.1 bits), Expect = 9.9e-05, P = 9.9e-05
Identities = 24/87 (27%), Positives = 45/87 (51%)
Query: 4 NGXXXXXXXRSSSIESGTKLYISNLEYGVSNEDIKELFSEVGELKRCSVHFD-RSGRSKG 62
NG S + E K+++ L + S +D+K+ F++ GE+ C++ D +GRS+G
Sbjct: 53 NGAEGDQINASKNEEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRG 112
Query: 63 TAEVVLTRRADAIAAVKRYNNVQLDGK 89
+L + A ++ V +LDG+
Sbjct: 113 FG-FILFKDATSVEKVLDQKEHRLDGR 138
>ZFIN|ZDB-GENE-041210-114 [details] [associations]
symbol:zcrb1 "zinc finger CCHC-type and RNA binding
motif 1" species:7955 "Danio rerio" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA]
[GO:0046872 "metal ion binding" evidence=IEA] [GO:0005681
"spliceosomal complex" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
InterPro:IPR000504 InterPro:IPR001878 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00098 PROSITE:PS50102 PROSITE:PS50158
SMART:SM00343 SMART:SM00360 ZFIN:ZDB-GENE-041210-114 GO:GO:0008380
GO:GO:0000166 GO:GO:0046872 GO:GO:0008270 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0005681 GO:GO:0003723 Gene3D:4.10.60.10
HOVERGEN:HBG107480 EMBL:AL929504 GeneTree:ENSGT00600000084414
HSSP:Q7YZ92 CTD:85437 HOGENOM:HOG000007632 KO:K13154
OrthoDB:EOG4GXFNW EMBL:BC092992 IPI:IPI00501794
RefSeq:NP_001017589.1 UniGene:Dr.80171 ProteinModelPortal:Q5SP50
SMR:Q5SP50 Ensembl:ENSDART00000067174 GeneID:550251 KEGG:dre:550251
eggNOG:NOG270852 InParanoid:Q5SP50 OMA:YRYSSVA NextBio:20879514
Bgee:Q5SP50 Uniprot:Q5SP50
Length = 218
Score = 106 (42.4 bits), Expect = 0.00011, P = 0.00011
Identities = 25/78 (32%), Positives = 45/78 (57%)
Query: 19 SGTKLYISNLEYGVSNEDIKELFSEVGELKRCSVHFDRSGR-SKGTAEVVLTRRADAIAA 77
S + +Y+SN+ + ++N D+ +L S+ G++ + ++ D+ R SKG A V+ R A
Sbjct: 8 SKSTVYVSNIPFSLTNSDMHKLCSKYGKVVKVTIVKDKHTRMSKGVAFVLFLDRESAYNC 67
Query: 78 VKRYNNVQLDGKPMKIEI 95
+ NN QL G+ +K I
Sbjct: 68 SRSLNNKQLFGRMVKASI 85
>ZFIN|ZDB-GENE-030131-5841 [details] [associations]
symbol:cirbp "cold inducible RNA binding protein"
species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0005575 "cellular_component" evidence=ND] [GO:0009409 "response
to cold" evidence=IDA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-030131-5841 GO:GO:0000166 GO:GO:0009409
Gene3D:3.30.70.330 GO:GO:0003676 GeneTree:ENSGT00700000104309
EMBL:BX649404 IPI:IPI00758644 PRIDE:F1R6L3
Ensembl:ENSDART00000105405 ArrayExpress:F1R6L3 Bgee:F1R6L3
Uniprot:F1R6L3
Length = 224
Score = 106 (42.4 bits), Expect = 0.00012, P = 0.00012
Identities = 25/81 (30%), Positives = 43/81 (53%)
Query: 22 KLYISNLEYGVSNEDIKELFSEVGELKRCSVHFDR-SGRSKGTAEVVLTRRADAIAAVKR 80
KL+I L Y + + ++E FS+ G + + V DR + RS+G V DA A+
Sbjct: 24 KLFIGGLSYDTTEQSLEEAFSKYGTIAKVDVIRDRETDRSRGFGFVTFENPEDAKDAMAA 83
Query: 81 YNNVQLDGKPMKIEIIGTNIG 101
N Q+DG+ ++++ G + G
Sbjct: 84 MNGKQVDGRMIRVDEAGKSGG 104
>SGD|S000000967 [details] [associations]
symbol:PAB1 "Poly(A) binding protein" species:4932
"Saccharomyces cerevisiae" [GO:0008143 "poly(A) RNA binding"
evidence=IDA;IMP] [GO:0005634 "nucleus" evidence=IEA;IDA]
[GO:0005840 "ribosome" evidence=IDA] [GO:0010494 "cytoplasmic
stress granule" evidence=IDA] [GO:0005737 "cytoplasm"
evidence=IEA;IDA] [GO:0006446 "regulation of translational
initiation" evidence=IMP;IDA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0006417 "regulation of translation" evidence=IEA] [GO:0006810
"transport" evidence=IEA] [GO:0051028 "mRNA transport"
evidence=IEA] [GO:0060211 "regulation of nuclear-transcribed mRNA
poly(A) tail shortening" evidence=IMP;IDA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
SGD:S000000967 GO:GO:0005634 GO:GO:0000166 GO:GO:0006446
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0005840 EMBL:BK006939
GO:GO:0051028 EMBL:U18922 GO:GO:0010494 eggNOG:COG0724
GO:GO:0008143 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 GO:GO:0060211
GeneTree:ENSGT00640000091232 OrthoDB:EOG4QJVWJ EMBL:M12780
EMBL:M13371 EMBL:D00023 EMBL:AY692854 PIR:A25221 RefSeq:NP_011092.1
PDB:1IFW PDBsum:1IFW ProteinModelPortal:P04147 SMR:P04147
DIP:DIP-2275N IntAct:P04147 MINT:MINT-693056 STRING:P04147
PaxDb:P04147 PeptideAtlas:P04147 EnsemblFungi:YER165W GeneID:856912
KEGG:sce:YER165W OMA:ITEKNQQ EvolutionaryTrace:P04147
NextBio:983356 Genevestigator:P04147 GermOnline:YER165W
Uniprot:P04147
Length = 577
Score = 110 (43.8 bits), Expect = 0.00013, P = 0.00013
Identities = 22/73 (30%), Positives = 41/73 (56%)
Query: 21 TKLYISNLEYGVSNEDIKELFSEVGELKRCSVHFDRSGRSKGTAEVVLTRRADAIAAVKR 80
T LY+ N+ ++E +ELF++ G + S+ D G+ KG V + DA+ AV+
Sbjct: 219 TNLYVKNINSETTDEQFQELFAKFGPIVSASLEKDADGKLKGFGFVNYEKHEDAVKAVEA 278
Query: 81 YNNVQLDGKPMKI 93
N+ +L+G+ + +
Sbjct: 279 LNDSELNGEKLYV 291
>UNIPROTKB|E7EQV3 [details] [associations]
symbol:PABPC1 "Polyadenylate-binding protein 1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IDA] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
EMBL:AP001205 HGNC:HGNC:8554 ChiTaRS:PABPC1 IPI:IPI00977833
ProteinModelPortal:E7EQV3 SMR:E7EQV3 Ensembl:ENST00000519004
ArrayExpress:E7EQV3 Bgee:E7EQV3 Uniprot:E7EQV3
Length = 591
Score = 110 (43.8 bits), Expect = 0.00013, P = 0.00013
Identities = 26/73 (35%), Positives = 37/73 (50%)
Query: 21 TKLYISNLEYGVSNEDIKELFSEVGELKRCSVHFDRSGRSKGTAEVVLTRRADAIAAVKR 80
T +YI N + +E +K+LF + G V D SG+SKG V R DA AV
Sbjct: 146 TNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDE 205
Query: 81 YNNVQLDGKPMKI 93
N +L+GK + +
Sbjct: 206 MNGKELNGKQIYV 218
>TAIR|locus:2079874 [details] [associations]
symbol:CP33 "chloroplast RNA-binding protein 33"
species:3702 "Arabidopsis thaliana" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS] [GO:0009579
"thylakoid" evidence=IDA] [GO:0009507 "chloroplast" evidence=IDA]
[GO:0009570 "chloroplast stroma" evidence=IDA] [GO:0009793 "embryo
development ending in seed dormancy" evidence=RCA] [GO:0010027
"thylakoid membrane organization" evidence=RCA] [GO:0010228
"vegetative to reproductive phase transition of meristem"
evidence=RCA] [GO:0016226 "iron-sulfur cluster assembly"
evidence=RCA] [GO:0019288 "isopentenyl diphosphate biosynthetic
process, mevalonate-independent pathway" evidence=RCA] [GO:0048481
"ovule development" evidence=RCA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0009570 EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0009579 HSSP:P19339
eggNOG:COG0724 HOGENOM:HOG000276232 EMBL:AL050300 UniGene:At.65006
UniGene:At.71002 EMBL:AY039607 EMBL:AY078022 EMBL:AY085279
EMBL:D31714 IPI:IPI00543679 PIR:S53494 RefSeq:NP_190806.1
ProteinModelPortal:Q39061 SMR:Q39061 STRING:Q39061 PaxDb:Q39061
PRIDE:Q39061 EnsemblPlants:AT3G52380.1 GeneID:824403
KEGG:ath:AT3G52380 TAIR:At3g52380 InParanoid:Q39061 OMA:FISFESA
PhylomeDB:Q39061 ProtClustDB:CLSN2684767 Genevestigator:Q39061
Uniprot:Q39061
Length = 329
Score = 108 (43.1 bits), Expect = 0.00013, P = 0.00013
Identities = 22/80 (27%), Positives = 48/80 (60%)
Query: 15 SSIESGTKLYISNLEYGVSNEDIKELFSEVGELKRCSVHFDR-SGRSKGTAEVVLTRRAD 73
+S E G +LY+ NL Y +++ ++ ++F E G + + +D+ + RS+G V + +
Sbjct: 111 ASGEEG-RLYVGNLPYTITSSELSQIFGEAGTVVDVQIVYDKVTDRSRGFGFVTMGSIEE 169
Query: 74 AIAAVKRYNNVQLDGKPMKI 93
A A++ +N+ Q+ G+ +K+
Sbjct: 170 AKEAMQMFNSSQIGGRTVKV 189
>UNIPROTKB|E2RQC8 [details] [associations]
symbol:PABPC1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 GeneTree:ENSGT00640000091232 EMBL:AAEX03008681
ProteinModelPortal:E2RQC8 PRIDE:E2RQC8 Ensembl:ENSCAFT00000000885
NextBio:20898275 Uniprot:E2RQC8
Length = 596
Score = 110 (43.8 bits), Expect = 0.00013, P = 0.00013
Identities = 26/73 (35%), Positives = 37/73 (50%)
Query: 21 TKLYISNLEYGVSNEDIKELFSEVGELKRCSVHFDRSGRSKGTAEVVLTRRADAIAAVKR 80
T +YI N + +E +K+LF + G V D SG+SKG V R DA AV
Sbjct: 191 TNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDE 250
Query: 81 YNNVQLDGKPMKI 93
N +L+GK + +
Sbjct: 251 MNGKELNGKQIYV 263
>UNIPROTKB|E7ERJ7 [details] [associations]
symbol:PABPC1 "Polyadenylate-binding protein 1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IDA] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
EMBL:AP001205 HGNC:HGNC:8554 ChiTaRS:PABPC1 IPI:IPI00909378
ProteinModelPortal:E7ERJ7 SMR:E7ERJ7 PRIDE:E7ERJ7
Ensembl:ENST00000522387 UCSC:uc011lhc.1 ArrayExpress:E7ERJ7
Bgee:E7ERJ7 Uniprot:E7ERJ7
Length = 604
Score = 110 (43.8 bits), Expect = 0.00013, P = 0.00013
Identities = 26/73 (35%), Positives = 37/73 (50%)
Query: 21 TKLYISNLEYGVSNEDIKELFSEVGELKRCSVHFDRSGRSKGTAEVVLTRRADAIAAVKR 80
T +YI N + +E +K+LF + G V D SG+SKG V R DA AV
Sbjct: 159 TNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDE 218
Query: 81 YNNVQLDGKPMKI 93
N +L+GK + +
Sbjct: 219 MNGKELNGKQIYV 231
>UNIPROTKB|D6R9P3 [details] [associations]
symbol:HNRNPAB "Heterogeneous nuclear ribonucleoprotein
A/B" species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 HOGENOM:HOG000234441
InterPro:IPR012956 Pfam:PF08143 EMBL:AC136632 HGNC:HGNC:5034
ChiTaRS:HNRNPAB IPI:IPI00964686 ProteinModelPortal:D6R9P3
SMR:D6R9P3 Ensembl:ENST00000515193 ArrayExpress:D6R9P3 Bgee:D6R9P3
Uniprot:D6R9P3
Length = 280
Score = 107 (42.7 bits), Expect = 0.00014, P = 0.00014
Identities = 24/87 (27%), Positives = 45/87 (51%)
Query: 4 NGXXXXXXXRSSSIESGTKLYISNLEYGVSNEDIKELFSEVGELKRCSVHFD-RSGRSKG 62
NG S + E K+++ L + S +D+K+ F++ GE+ C++ D +GRS+G
Sbjct: 53 NGAEGDQINASKNEEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRG 112
Query: 63 TAEVVLTRRADAIAAVKRYNNVQLDGK 89
+L + A ++ V +LDG+
Sbjct: 113 FG-FILFKDAASVEKVLDQKEHRLDGR 138
>UNIPROTKB|D6RD18 [details] [associations]
symbol:HNRNPAB "Heterogeneous nuclear ribonucleoprotein
A/B" species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 HOGENOM:HOG000234441
InterPro:IPR012956 Pfam:PF08143 EMBL:AC136632 HGNC:HGNC:5034
ChiTaRS:HNRNPAB IPI:IPI00966854 ProteinModelPortal:D6RD18
SMR:D6RD18 Ensembl:ENST00000514633 ArrayExpress:D6RD18 Bgee:D6RD18
Uniprot:D6RD18
Length = 283
Score = 107 (42.7 bits), Expect = 0.00014, P = 0.00014
Identities = 24/87 (27%), Positives = 45/87 (51%)
Query: 4 NGXXXXXXXRSSSIESGTKLYISNLEYGVSNEDIKELFSEVGELKRCSVHFD-RSGRSKG 62
NG S + E K+++ L + S +D+K+ F++ GE+ C++ D +GRS+G
Sbjct: 53 NGAEGDQINASKNEEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRG 112
Query: 63 TAEVVLTRRADAIAAVKRYNNVQLDGK 89
+L + A ++ V +LDG+
Sbjct: 113 FG-FILFKDAASVEKVLDQKEHRLDGR 138
>UNIPROTKB|P61286 [details] [associations]
symbol:PABPC1 "Polyadenylate-binding protein 1"
species:9913 "Bos taurus" [GO:0005515 "protein binding"
evidence=IPI] [GO:0010494 "cytoplasmic stress granule"
evidence=ISS] [GO:2000623 "negative regulation of
nuclear-transcribed mRNA catabolic process, nonsense-mediated
decay" evidence=ISS] [GO:0030529 "ribonucleoprotein complex"
evidence=ISS] [GO:0071013 "catalytic step 2 spliceosome"
evidence=IEA] [GO:0008143 "poly(A) RNA binding" evidence=IEA]
[GO:0008022 "protein C-terminus binding" evidence=IEA] [GO:0008380
"RNA splicing" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0000184 "nuclear-transcribed mRNA catabolic
process, nonsense-mediated decay" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000184 GO:GO:0008380
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0071013
GO:GO:0010494 GO:GO:0008143 HOVERGEN:HBG002295 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
EMBL:AJ401269 EMBL:BC102365 IPI:IPI00705440 RefSeq:NP_776993.1
UniGene:Bt.53579 ProteinModelPortal:P61286 SMR:P61286 PRIDE:P61286
Ensembl:ENSBTAT00000064237 GeneID:282296 KEGG:bta:282296 CTD:26986
GeneTree:ENSGT00640000091232 OMA:TITSAKX OrthoDB:EOG40ZQX5
BindingDB:P61286 NextBio:20806097 GO:GO:2000623 Uniprot:P61286
Length = 636
Score = 110 (43.8 bits), Expect = 0.00014, P = 0.00014
Identities = 26/73 (35%), Positives = 37/73 (50%)
Query: 21 TKLYISNLEYGVSNEDIKELFSEVGELKRCSVHFDRSGRSKGTAEVVLTRRADAIAAVKR 80
T +YI N + +E +K+LF + G V D SG+SKG V R DA AV
Sbjct: 191 TNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDE 250
Query: 81 YNNVQLDGKPMKI 93
N +L+GK + +
Sbjct: 251 MNGKELNGKQIYV 263
>UNIPROTKB|J9P326 [details] [associations]
symbol:PABPC1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 CTD:26986 GeneTree:ENSGT00640000091232
OMA:TITSAKX EMBL:AAEX03008681 RefSeq:XP_856708.1
ProteinModelPortal:J9P326 Ensembl:ENSCAFT00000042991 GeneID:612751
KEGG:cfa:612751 Uniprot:J9P326
Length = 636
Score = 110 (43.8 bits), Expect = 0.00014, P = 0.00014
Identities = 26/73 (35%), Positives = 37/73 (50%)
Query: 21 TKLYISNLEYGVSNEDIKELFSEVGELKRCSVHFDRSGRSKGTAEVVLTRRADAIAAVKR 80
T +YI N + +E +K+LF + G V D SG+SKG V R DA AV
Sbjct: 191 TNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDE 250
Query: 81 YNNVQLDGKPMKI 93
N +L+GK + +
Sbjct: 251 MNGKELNGKQIYV 263
>UNIPROTKB|P11940 [details] [associations]
symbol:PABPC1 "Polyadenylate-binding protein 1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0008143 "poly(A) RNA binding" evidence=IDA;TAS]
[GO:0006378 "mRNA polyadenylation" evidence=TAS] [GO:0005737
"cytoplasm" evidence=IDA;TAS] [GO:0048255 "mRNA stabilization"
evidence=TAS] [GO:0008494 "translation activator activity"
evidence=TAS] [GO:0005515 "protein binding" evidence=IPI]
[GO:0008022 "protein C-terminus binding" evidence=IPI] [GO:0071013
"catalytic step 2 spliceosome" evidence=IDA] [GO:0030529
"ribonucleoprotein complex" evidence=IDA] [GO:0000398 "mRNA
splicing, via spliceosome" evidence=IC] [GO:2000623 "negative
regulation of nuclear-transcribed mRNA catabolic process,
nonsense-mediated decay" evidence=IDA] [GO:0010494 "cytoplasmic
stress granule" evidence=IDA] [GO:0005634 "nucleus" evidence=IDA]
[GO:0000184 "nuclear-transcribed mRNA catabolic process,
nonsense-mediated decay" evidence=TAS] [GO:0000288
"nuclear-transcribed mRNA catabolic process,
deadenylation-dependent decay" evidence=TAS] [GO:0000289
"nuclear-transcribed mRNA poly(A) tail shortening" evidence=TAS]
[GO:0005829 "cytosol" evidence=TAS] [GO:0006412 "translation"
evidence=TAS] [GO:0006413 "translational initiation" evidence=TAS]
[GO:0010467 "gene expression" evidence=TAS] [GO:0016070 "RNA
metabolic process" evidence=TAS] [GO:0016071 "mRNA metabolic
process" evidence=TAS] [GO:0044267 "cellular protein metabolic
process" evidence=TAS] [GO:0045727 "positive regulation of
translation" evidence=TAS] Reactome:REACT_71 Reactome:REACT_21257
Reactome:REACT_17015 InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0005829 GO:GO:0000184 GO:GO:0000166 GO:GO:0006413
Gene3D:3.30.70.330 GO:GO:0006378 GO:GO:0008494 GO:GO:0048255
GO:GO:0000398 GO:GO:0071013 PDB:3KTR PDBsum:3KTR GO:GO:0010494
eggNOG:COG0724 GO:GO:0000289 GO:GO:0008143 HOVERGEN:HBG002295
Reactome:REACT_1762 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 PDB:3KUI PDBsum:3KUI
PDB:2RQG PDB:2RQH PDBsum:2RQG PDBsum:2RQH PDB:3KUJ PDBsum:3KUJ
PDB:4F02 PDBsum:4F02 PDB:3PTH PDBsum:3PTH PDB:3PKN PDBsum:3PKN
CTD:26986 OMA:TITSAKX OrthoDB:EOG40ZQX5 GO:GO:2000623 EMBL:Y00345
EMBL:U68104 EMBL:U68093 EMBL:U68094 EMBL:U68095 EMBL:U68097
EMBL:U68098 EMBL:U68099 EMBL:U68100 EMBL:U68101 EMBL:U68102
EMBL:U68103 EMBL:AP001205 EMBL:BC015958 EMBL:BC023520 EMBL:Z48501
IPI:IPI00008524 IPI:IPI00410017 PIR:A93668 PIR:S52491
RefSeq:NP_002559.2 UniGene:Hs.387804 PDB:1CVJ PDB:1G9L PDB:1JGN
PDB:1JH4 PDB:2K8G PDB:2X04 PDB:3KTP PDB:3KUR PDB:3KUS PDB:3KUT
PDB:4F25 PDB:4F26 PDBsum:1CVJ PDBsum:1G9L PDBsum:1JGN PDBsum:1JH4
PDBsum:2K8G PDBsum:2X04 PDBsum:3KTP PDBsum:3KUR PDBsum:3KUS
PDBsum:3KUT PDBsum:4F25 PDBsum:4F26 ProteinModelPortal:P11940
SMR:P11940 DIP:DIP-31613N IntAct:P11940 MINT:MINT-96210
STRING:P11940 PhosphoSite:P11940 DMDM:3183544 PaxDb:P11940
PRIDE:P11940 DNASU:26986 Ensembl:ENST00000318607 GeneID:26986
KEGG:hsa:26986 UCSC:uc003yjs.1 GeneCards:GC08M101715 HGNC:HGNC:8554
HPA:CAB011536 HPA:HPA045423 MIM:604679 neXtProt:NX_P11940
PharmGKB:PA32880 InParanoid:P11940 PhylomeDB:P11940
BindingDB:P11940 ChEMBL:CHEMBL1293286 ChiTaRS:PABPC1
EvolutionaryTrace:P11940 GenomeRNAi:26986 NextBio:49454
PMAP-CutDB:P11940 ArrayExpress:P11940 Bgee:P11940 CleanEx:HS_PABPC1
Genevestigator:P11940 GermOnline:ENSG00000070756 Uniprot:P11940
Length = 636
Score = 110 (43.8 bits), Expect = 0.00014, P = 0.00014
Identities = 26/73 (35%), Positives = 37/73 (50%)
Query: 21 TKLYISNLEYGVSNEDIKELFSEVGELKRCSVHFDRSGRSKGTAEVVLTRRADAIAAVKR 80
T +YI N + +E +K+LF + G V D SG+SKG V R DA AV
Sbjct: 191 TNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDE 250
Query: 81 YNNVQLDGKPMKI 93
N +L+GK + +
Sbjct: 251 MNGKELNGKQIYV 263
>UNIPROTKB|F2Z557 [details] [associations]
symbol:PABPC1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 CTD:26986 GeneTree:ENSGT00640000091232
EMBL:CU302394 RefSeq:XP_001927782.1 UniGene:Ssc.41568
ProteinModelPortal:F2Z557 SMR:F2Z557 PRIDE:F2Z557
Ensembl:ENSSSCT00000006652 GeneID:100153958 KEGG:ssc:100153958
Uniprot:F2Z557
Length = 636
Score = 110 (43.8 bits), Expect = 0.00014, P = 0.00014
Identities = 26/73 (35%), Positives = 37/73 (50%)
Query: 21 TKLYISNLEYGVSNEDIKELFSEVGELKRCSVHFDRSGRSKGTAEVVLTRRADAIAAVKR 80
T +YI N + +E +K+LF + G V D SG+SKG V R DA AV
Sbjct: 191 TNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDE 250
Query: 81 YNNVQLDGKPMKI 93
N +L+GK + +
Sbjct: 251 MNGKELNGKQIYV 263
>UNIPROTKB|Q5R8F7 [details] [associations]
symbol:PABPC1 "Polyadenylate-binding protein 1"
species:9601 "Pongo abelii" [GO:0010494 "cytoplasmic stress
granule" evidence=ISS] [GO:0030529 "ribonucleoprotein complex"
evidence=ISS] [GO:2000623 "negative regulation of
nuclear-transcribed mRNA catabolic process, nonsense-mediated
decay" evidence=ISS] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0000184 GO:GO:0008380 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0005681 GO:GO:0003723 GO:GO:0010494
HOVERGEN:HBG002295 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 HSSP:P11940 GO:GO:2000623 EMBL:CR859795
RefSeq:NP_001128842.1 UniGene:Pab.18910 ProteinModelPortal:Q5R8F7
SMR:Q5R8F7 PRIDE:Q5R8F7 GeneID:100189758 KEGG:pon:100189758
InParanoid:Q5R8F7 Uniprot:Q5R8F7
Length = 636
Score = 110 (43.8 bits), Expect = 0.00014, P = 0.00014
Identities = 26/73 (35%), Positives = 37/73 (50%)
Query: 21 TKLYISNLEYGVSNEDIKELFSEVGELKRCSVHFDRSGRSKGTAEVVLTRRADAIAAVKR 80
T +YI N + +E +K+LF + G V D SG+SKG V R DA AV
Sbjct: 191 TNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDE 250
Query: 81 YNNVQLDGKPMKI 93
N +L+GK + +
Sbjct: 251 MNGKELNGKQIYV 263
>UNIPROTKB|I3LS00 [details] [associations]
symbol:PABPC1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:2000623 "negative regulation of nuclear-transcribed
mRNA catabolic process, nonsense-mediated decay" evidence=IEA]
[GO:0071013 "catalytic step 2 spliceosome" evidence=IEA]
[GO:0010494 "cytoplasmic stress granule" evidence=IEA] [GO:0008143
"poly(A) RNA binding" evidence=IEA] [GO:0008022 "protein C-terminus
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0071013 GO:GO:0010494
GO:GO:0008143 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 GeneTree:ENSGT00640000091232 OMA:TITSAKX
GO:GO:2000623 EMBL:CU302394 Ensembl:ENSSSCT00000032533
Uniprot:I3LS00
Length = 647
Score = 110 (43.8 bits), Expect = 0.00015, P = 0.00015
Identities = 26/73 (35%), Positives = 37/73 (50%)
Query: 21 TKLYISNLEYGVSNEDIKELFSEVGELKRCSVHFDRSGRSKGTAEVVLTRRADAIAAVKR 80
T +YI N + +E +K+LF + G V D SG+SKG V R DA AV
Sbjct: 191 TNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDE 250
Query: 81 YNNVQLDGKPMKI 93
N +L+GK + +
Sbjct: 251 MNGKELNGKQIYV 263
>TAIR|locus:2012161 [details] [associations]
symbol:PAB8 "AT1G49760" species:3702 "Arabidopsis
thaliana" [GO:0003723 "RNA binding" evidence=ISS] [GO:0003743
"translation initiation factor activity" evidence=ISS] [GO:0005737
"cytoplasm" evidence=ISM] [GO:0046686 "response to cadmium ion"
evidence=IEP] [GO:0005829 "cytosol" evidence=IDA] [GO:0005515
"protein binding" evidence=IPI] [GO:0006164 "purine nucleotide
biosynthetic process" evidence=RCA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 EMBL:CP002684 GenomeReviews:CT485782_GR
GO:GO:0005829 GO:GO:0046686 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 EMBL:AC011807 eggNOG:COG0724 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
HOGENOM:HOG000217922 HSSP:P11940 ProtClustDB:CLSN2714507
EMBL:AF370517 EMBL:AY064622 IPI:IPI00535850 PIR:C96534
RefSeq:NP_001185184.1 RefSeq:NP_564554.1 UniGene:At.21584
UniGene:At.67107 UniGene:At.67318 ProteinModelPortal:Q9FXA2
SMR:Q9FXA2 IntAct:Q9FXA2 STRING:Q9FXA2 PaxDb:Q9FXA2 PRIDE:Q9FXA2
ProMEX:Q9FXA2 EnsemblPlants:AT1G49760.1 EnsemblPlants:AT1G49760.2
GeneID:841399 KEGG:ath:AT1G49760 TAIR:At1g49760 InParanoid:Q9FXA2
OMA:RPPYYAP PhylomeDB:Q9FXA2 Genevestigator:Q9FXA2 Uniprot:Q9FXA2
Length = 671
Score = 110 (43.8 bits), Expect = 0.00015, P = 0.00015
Identities = 22/76 (28%), Positives = 41/76 (53%)
Query: 20 GTKLYISNLEYGVSNEDIKELFSEVGELKRCSVHFDRSGRSKGTAEVVLTRRADAIAAVK 79
G+ LY+ NL+ V+++ ++E F+ G + C V D SG S+G+ V + +A A+
Sbjct: 326 GSNLYVKNLDESVTDDKLREHFAPFGTITSCKVMRDPSGVSRGSGFVAFSTPEEATRAIT 385
Query: 80 RYNNVQLDGKPMKIEI 95
N + KP+ + +
Sbjct: 386 EMNGKMIVTKPLYVAL 401
>TAIR|locus:2062379 [details] [associations]
symbol:AT2G35410 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0009507 "chloroplast" evidence=ISM;IDA] [GO:0009579 "thylakoid"
evidence=IDA] [GO:0009570 "chloroplast stroma" evidence=IDA]
[GO:0006364 "rRNA processing" evidence=RCA] [GO:0009902
"chloroplast relocation" evidence=RCA] [GO:0010027 "thylakoid
membrane organization" evidence=RCA] [GO:0015979 "photosynthesis"
evidence=RCA] [GO:0015995 "chlorophyll biosynthetic process"
evidence=RCA] [GO:0019288 "isopentenyl diphosphate biosynthetic
process, mevalonate-independent pathway" evidence=RCA] [GO:0034660
"ncRNA metabolic process" evidence=RCA] [GO:0042793 "transcription
from plastid promoter" evidence=RCA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0009570 EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0009579 EMBL:AC005314
UniGene:At.48551 eggNOG:COG0724 HSSP:P11940 EMBL:AY042799
EMBL:BT000365 IPI:IPI00522747 PIR:C84768 RefSeq:NP_181084.1
ProteinModelPortal:O82299 SMR:O82299 STRING:O82299 PaxDb:O82299
PRIDE:O82299 EnsemblPlants:AT2G35410.1 GeneID:818107
KEGG:ath:AT2G35410 TAIR:At2g35410 HOGENOM:HOG000240991
InParanoid:O82299 OMA:VSNLAWK PhylomeDB:O82299
ProtClustDB:CLSN2720628 ArrayExpress:O82299 Genevestigator:O82299
Uniprot:O82299
Length = 308
Score = 107 (42.7 bits), Expect = 0.00016, P = 0.00016
Identities = 20/72 (27%), Positives = 41/72 (56%)
Query: 22 KLYISNLEYGVSNEDIKELFSEVGELKRCSVHFDRSGRSKGTAEVVLTRRADAIAAVKRY 81
KL++ NL + +S DI ELF + G + + + G+++G A V + +A AA+ ++
Sbjct: 96 KLFVFNLPWSMSVNDISELFGQCGTVNNVEIIRQKDGKNRGFAFVTMASGEEAQAAIDKF 155
Query: 82 NNVQLDGKPMKI 93
+ Q+ G+ + +
Sbjct: 156 DTFQVSGRIISV 167
>TAIR|locus:2160752 [details] [associations]
symbol:AT5G06210 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0008150 "biological_process" evidence=ND] [GO:0009507
"chloroplast" evidence=ISM] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 EMBL:CP002688
GenomeReviews:BA000015_GR GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 eggNOG:COG0724 EMBL:AP002544 HOGENOM:HOG000276232
HSSP:Q61474 EMBL:AY062714 EMBL:AY093349 EMBL:AY087577
IPI:IPI00530408 RefSeq:NP_196239.1 UniGene:At.27256
ProteinModelPortal:Q9FFZ6 SMR:Q9FFZ6 STRING:Q9FFZ6 PaxDb:Q9FFZ6
PRIDE:Q9FFZ6 EnsemblPlants:AT5G06210.1 GeneID:830508
KEGG:ath:AT5G06210 TAIR:At5g06210 InParanoid:Q9FFZ6 OMA:SDRSKGF
PhylomeDB:Q9FFZ6 ProtClustDB:CLSN2686837 ArrayExpress:Q9FFZ6
Genevestigator:Q9FFZ6 Uniprot:Q9FFZ6
Length = 146
Score = 99 (39.9 bits), Expect = 0.00017, P = 0.00017
Identities = 22/75 (29%), Positives = 40/75 (53%)
Query: 21 TKLYISNLEYGVSNEDIKELFSEVGELKRCSVHFDR-SGRSKGTAEVVLTRRADAIAAVK 79
+KL+I L + + + + E FS+ G++ + DR S RSKG V +A A+
Sbjct: 34 SKLFIGGLSFCTTEQGLSEAFSKCGQVVEAQIVMDRVSDRSKGFGFVTFASADEAQKALM 93
Query: 80 RYNNVQLDGKPMKIE 94
+N QL+G+ + ++
Sbjct: 94 EFNGQQLNGRTIFVD 108
>ZFIN|ZDB-GENE-030131-6898 [details] [associations]
symbol:hnrnpm "heterogeneous nuclear
ribonucleoprotein M" species:7955 "Danio rerio" [GO:0003723 "RNA
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 InterPro:IPR024667
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-030131-6898 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0000398 GeneTree:ENSGT00410000025635
InterPro:IPR024666 PANTHER:PTHR23003:SF6 Pfam:PF11532 EMBL:BX649327
IPI:IPI01024026 Ensembl:ENSDART00000137689 ArrayExpress:F1R2E0
Bgee:F1R2E0 Uniprot:F1R2E0
Length = 715
Score = 110 (43.8 bits), Expect = 0.00017, P = 0.00017
Identities = 21/76 (27%), Positives = 42/76 (55%)
Query: 20 GTKLYISNLEYGVSNEDIKELFSEVGELKRCSVHFDRSGRSKGTAEVVLTRRADAIAAVK 79
G+ ++++NL+Y V + +KE+F G + R + D+ G+S+G V +A+ AV
Sbjct: 232 GSTIFVANLDYKVGWKKLKEVFGMAGMVVRADILEDKDGKSRGMGTVTFDMPIEAVQAVS 291
Query: 80 RYNNVQLDGKPMKIEI 95
+N L + M +++
Sbjct: 292 MFNGQLLFNRVMHVKL 307
>UNIPROTKB|D6RF44 [details] [associations]
symbol:HNRNPD "Heterogeneous nuclear ribonucleoprotein D0"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0043488 "regulation of mRNA stability" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005829 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 GO:GO:0048255 HOGENOM:HOG000234441 EMBL:AC124016
HGNC:HGNC:5036 ChiTaRS:HNRNPD IPI:IPI00967562
ProteinModelPortal:D6RF44 SMR:D6RF44 Ensembl:ENST00000515432
ArrayExpress:D6RF44 Bgee:D6RF44 Uniprot:D6RF44
Length = 112
Score = 91 (37.1 bits), Expect = 0.00017, P = 0.00017
Identities = 20/68 (29%), Positives = 40/68 (58%)
Query: 23 LYISNLEYGVSNEDIKELFSEVGELKRCSVHFDR-SGRSKGTAEVVLTRRADAIAAVKRY 81
++I L + + +D+K+ FS+ GE+ C++ D +GRS+G VL + ++++ V
Sbjct: 1 MFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFG-FVLFKESESVDKVMDQ 59
Query: 82 NNVQLDGK 89
+L+GK
Sbjct: 60 KEHKLNGK 67
>UNIPROTKB|F6VZ39 [details] [associations]
symbol:RBM38 "RNA-binding protein 38" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AL109955
HGNC:HGNC:15818 IPI:IPI00927190 ProteinModelPortal:F6VZ39
SMR:F6VZ39 PRIDE:F6VZ39 Ensembl:ENST00000344785 ArrayExpress:F6VZ39
Bgee:F6VZ39 Uniprot:F6VZ39
Length = 123
Score = 91 (37.1 bits), Expect = 0.00017, P = 0.00017
Identities = 21/76 (27%), Positives = 41/76 (53%)
Query: 21 TKLYISNLEYGVSNEDIKELFSEVGELKRCSVHFDR-SGRSKGTAEVVLTRRADAIAAVK 79
TK+++ L Y ++ +++ F G+++ V DR +G+S+G V + RA A A K
Sbjct: 11 TKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACK 70
Query: 80 RYNNVQLDGKPMKIEI 95
N + +DG+ + +
Sbjct: 71 DPNPI-IDGRKANVNL 85
>UNIPROTKB|K7EJV5 [details] [associations]
symbol:CIRBP "Cold-inducible RNA-binding protein"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 Gene3D:3.30.70.330 EMBL:AC004221 EMBL:AC004258
HGNC:HGNC:1982 Ensembl:ENST00000588411 Uniprot:K7EJV5
Length = 105
Score = 91 (37.1 bits), Expect = 0.00017, P = 0.00017
Identities = 20/77 (25%), Positives = 41/77 (53%)
Query: 22 KLYISNLEYGVSNEDIKELFSEVGELKRCSVHFDR-SGRSKGTAEVVLTRRADAIAAVKR 80
KL++ L + + + ++++FS+ G++ V DR + RS+G V DA A+
Sbjct: 7 KLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMA 66
Query: 81 YNNVQLDGKPMKIEIIG 97
N +DG+ ++++ G
Sbjct: 67 MNGKSVDGRQIRVDQAG 83
>UNIPROTKB|K7GQZ8 [details] [associations]
symbol:LOC100515986 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
Gene3D:3.30.70.330 GeneTree:ENSGT00550000074641 EMBL:CU861981
Ensembl:ENSSSCT00000036547 Uniprot:K7GQZ8
Length = 88
Score = 91 (37.1 bits), Expect = 0.00017, P = 0.00017
Identities = 18/69 (26%), Positives = 39/69 (56%)
Query: 27 NLEYGVSNEDIKELFSEVGELKRCSVHFDR-SGRSKGTAEVVLTRRADAIAAVKRYNNVQ 85
N+ Y + E +K++FSEVG + + +DR +G+ KG + A++A++ N +
Sbjct: 3 NIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGRE 62
Query: 86 LDGKPMKIE 94
G+ ++++
Sbjct: 63 FSGRALRVD 71
>UNIPROTKB|Q5ZKR5 [details] [associations]
symbol:NCBP2 "Nuclear cap-binding protein subunit 2"
species:9031 "Gallus gallus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0005846 "nuclear cap binding complex"
evidence=IEA] [GO:0000184 "nuclear-transcribed mRNA catabolic
process, nonsense-mediated decay" evidence=IEA] [GO:0006370
"7-methylguanosine mRNA capping" evidence=IEA] [GO:0006417
"regulation of translation" evidence=IEA] [GO:0031047 "gene
silencing by RNA" evidence=IEA] [GO:0051028 "mRNA transport"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0045292 "mRNA cis splicing, via
spliceosome" evidence=ISS] [GO:0000340 "RNA 7-methylguanosine cap
binding" evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
InterPro:IPR027157 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0005737 GO:GO:0006417 GO:GO:0000184
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0031047 GO:GO:0000340
GO:GO:0051028 eggNOG:COG0724 GO:GO:0006370 GO:GO:0045292
HOGENOM:HOG000217589 OrthoDB:EOG470TJG PANTHER:PTHR18847
HSSP:P52298 KO:K12883 CTD:22916 GeneTree:ENSGT00390000003197
OMA:YRTDYDV EMBL:AJ720019 IPI:IPI00603887 RefSeq:NP_001006430.1
UniGene:Gga.6356 ProteinModelPortal:Q5ZKR5 SMR:Q5ZKR5
Ensembl:ENSGALT00000009239 GeneID:422214 KEGG:gga:422214
InParanoid:Q5ZKR5 NextBio:20824880 Uniprot:Q5ZKR5
Length = 168
Score = 102 (41.0 bits), Expect = 0.00017, P = 0.00017
Identities = 24/79 (30%), Positives = 45/79 (56%)
Query: 17 IESGTKLYISNLEYGVSNEDIKELFSEVGELKRCSVHFDRSGRSK-GTAEVVLTRRADAI 75
++ + LY+ NL + + E I+ELFS+ G++KR + D+ ++ G V RADA
Sbjct: 39 LKISSTLYVGNLSFYTTEEQIQELFSKCGDVKRIVMGLDKIKKTPCGFCFVEYYTRADAE 98
Query: 76 AAVKRYNNVQLDGKPMKIE 94
A++ N +LD + ++ +
Sbjct: 99 HAMRFINGTRLDDRIVRTD 117
>UNIPROTKB|D6RBZ0 [details] [associations]
symbol:HNRNPAB "Heterogeneous nuclear ribonucleoprotein
A/B" species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 HOGENOM:HOG000234441
InterPro:IPR012956 Pfam:PF08143 EMBL:AC136632 HGNC:HGNC:5034
ChiTaRS:HNRNPAB IPI:IPI00964992 ProteinModelPortal:D6RBZ0
SMR:D6RBZ0 Ensembl:ENST00000506339 ArrayExpress:D6RBZ0 Bgee:D6RBZ0
Uniprot:D6RBZ0
Length = 327
Score = 107 (42.7 bits), Expect = 0.00018, P = 0.00018
Identities = 24/87 (27%), Positives = 45/87 (51%)
Query: 4 NGXXXXXXXRSSSIESGTKLYISNLEYGVSNEDIKELFSEVGELKRCSVHFD-RSGRSKG 62
NG S + E K+++ L + S +D+K+ F++ GE+ C++ D +GRS+G
Sbjct: 53 NGAEGDQINASKNEEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRG 112
Query: 63 TAEVVLTRRADAIAAVKRYNNVQLDGK 89
+L + A ++ V +LDG+
Sbjct: 113 FG-FILFKDAASVEKVLDQKEHRLDGR 138
>UNIPROTKB|Q99729 [details] [associations]
symbol:HNRNPAB "Heterogeneous nuclear ribonucleoprotein
A/B" species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0030529 "ribonucleoprotein complex" evidence=IDA]
[GO:0003723 "RNA binding" evidence=TAS] [GO:0003729 "mRNA binding"
evidence=TAS] [GO:0001837 "epithelial to mesenchymal transition"
evidence=ISS] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=ISS] [GO:0005634 "nucleus"
evidence=ISS;IDA] [GO:0005737 "cytoplasm" evidence=ISS] [GO:0045893
"positive regulation of transcription, DNA-dependent" evidence=ISS]
[GO:0043565 "sequence-specific DNA binding" evidence=ISS]
[GO:0005730 "nucleolus" evidence=IDA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0005737 GO:GO:0045893 GO:GO:0000166
GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0030529 GO:GO:0001837
EMBL:CH471165 eggNOG:COG0724 HOGENOM:HOG000234441
HOVERGEN:HBG002295 KO:K13044 InterPro:IPR012956 Pfam:PF08143
EMBL:M65028 EMBL:U76713 EMBL:AK054600 EMBL:AK097657 EMBL:BC001616
EMBL:BC002625 EMBL:BC004561 EMBL:BC009359 EMBL:BC036708
IPI:IPI00106509 IPI:IPI00329355 IPI:IPI00334587 IPI:IPI00334713
PIR:S17563 RefSeq:NP_004490.2 RefSeq:NP_112556.2 UniGene:Hs.591731
UniGene:Hs.715055 PDB:3S7R PDBsum:3S7R ProteinModelPortal:Q99729
SMR:Q99729 IntAct:Q99729 MINT:MINT-4537784 STRING:Q99729
PhosphoSite:Q99729 DMDM:158523286 SWISS-2DPAGE:Q99729 PaxDb:Q99729
PRIDE:Q99729 Ensembl:ENST00000355836 Ensembl:ENST00000358344
Ensembl:ENST00000504898 Ensembl:ENST00000506259 GeneID:3182
KEGG:hsa:3182 UCSC:uc003miu.3 UCSC:uc003miv.3 CTD:3182
GeneCards:GC05P177631 HGNC:HGNC:5034 HPA:HPA046688 MIM:602688
neXtProt:NX_Q99729 PharmGKB:PA162391196 InParanoid:Q99729
OMA:FILFKDP OrthoDB:EOG42BX9K ChiTaRS:HNRNPAB
EvolutionaryTrace:Q99729 GenomeRNAi:3182 NextBio:12628
ArrayExpress:Q99729 Bgee:Q99729 CleanEx:HS_HNRNPAB
Genevestigator:Q99729 GermOnline:ENSG00000197451 Uniprot:Q99729
Length = 332
Score = 107 (42.7 bits), Expect = 0.00019, P = 0.00019
Identities = 24/87 (27%), Positives = 45/87 (51%)
Query: 4 NGXXXXXXXRSSSIESGTKLYISNLEYGVSNEDIKELFSEVGELKRCSVHFD-RSGRSKG 62
NG S + E K+++ L + S +D+K+ F++ GE+ C++ D +GRS+G
Sbjct: 52 NGAEGDQINASKNEEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRG 111
Query: 63 TAEVVLTRRADAIAAVKRYNNVQLDGK 89
+L + A ++ V +LDG+
Sbjct: 112 FG-FILFKDAASVEKVLDQKEHRLDGR 137
>WB|WBGene00004387 [details] [associations]
symbol:rnp-4 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0006396 "RNA processing"
evidence=IEA] [GO:0002009 "morphogenesis of an epithelium"
evidence=IMP] [GO:0009792 "embryo development ending in birth or
egg hatching" evidence=IMP] [GO:0000003 "reproduction"
evidence=IMP] [GO:0040035 "hermaphrodite genitalia development"
evidence=IMP] [GO:0040007 "growth" evidence=IMP] [GO:0002119
"nematode larval development" evidence=IMP] [GO:0040022
"feminization of hermaphroditic germ-line" evidence=IMP]
[GO:0009790 "embryo development" evidence=IMP] [GO:0001703
"gastrulation with mouth forming first" evidence=IMP] [GO:0006898
"receptor-mediated endocytosis" evidence=IMP] [GO:0040011
"locomotion" evidence=IMP] [GO:0006915 "apoptotic process"
evidence=IMP] InterPro:IPR000504 InterPro:IPR008111
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR01738 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0009792 GO:GO:0002009
GO:GO:0006898 GO:GO:0005737 GO:GO:0040007 GO:GO:0006915
GO:GO:0002119 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0040011
GO:GO:0003723 GO:GO:0006396 GO:GO:0040035 GO:GO:0040022 HSSP:Q9V535
eggNOG:COG0724 GeneTree:ENSGT00550000074641 GO:GO:0001703
EMBL:Z32683 HOGENOM:HOG000183826 KO:K12876 PIR:F88427
RefSeq:NP_497891.1 ProteinModelPortal:Q21832 SMR:Q21832
DIP:DIP-26500N IntAct:Q21832 MINT:MINT-1100537 STRING:Q21832
PaxDb:Q21832 EnsemblMetazoa:R07E5.14.1 EnsemblMetazoa:R07E5.14.2
EnsemblMetazoa:R07E5.14.3 GeneID:175572 KEGG:cel:CELE_R07E5.14
UCSC:R07E5.14.2 CTD:175572 WormBase:R07E5.14 InParanoid:Q21832
OMA:NIHEEAT NextBio:888726 Uniprot:Q21832
Length = 142
Score = 98 (39.6 bits), Expect = 0.00019, P = 0.00019
Identities = 23/80 (28%), Positives = 47/80 (58%)
Query: 16 SIESGTKLYISNLEYGVSNEDIKELFSEVGELKRCSVHFDR-SGRSKGTAEVVLTRRADA 74
S+E G ++++N+ + +D+ + FSE G++K ++ DR +G KG A V + +A
Sbjct: 51 SVE-GWIVFVTNIHEEATEDDVHDKFSEYGKIKNIHLNLDRRTGFLKGYALVEYETQKEA 109
Query: 75 IAAVKRYNNVQLDGKPMKIE 94
A+ + N+ L G+ +K++
Sbjct: 110 NEAIDQSNDTDLLGQNVKVD 129
>UNIPROTKB|Q3ZCE8 [details] [associations]
symbol:RBM8A "RNA-binding protein 8A" species:9913 "Bos
taurus" [GO:0016607 "nuclear speck" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0071013 "catalytic step 2
spliceosome" evidence=IEA] [GO:0035145 "exon-exon junction complex"
evidence=IEA] [GO:0000184 "nuclear-transcribed mRNA catabolic
process, nonsense-mediated decay" evidence=IEA] [GO:0051028 "mRNA
transport" evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA]
[GO:0006417 "regulation of translation" evidence=IEA] [GO:0006397
"mRNA processing" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR008111 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR01738 PROSITE:PS50102 SMART:SM00360
GO:GO:0005737 GO:GO:0006417 GO:GO:0000184 GO:GO:0008380
GO:GO:0000166 GO:GO:0016607 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0051028 GO:GO:0071013 eggNOG:COG0724
GO:GO:0035145 GeneTree:ENSGT00550000074641 HSSP:P52298
EMBL:BT025376 EMBL:BC102484 IPI:IPI00705285 IPI:IPI00939094
RefSeq:NP_001030401.1 UniGene:Bt.49450 ProteinModelPortal:Q3ZCE8
SMR:Q3ZCE8 STRING:Q3ZCE8 PRIDE:Q3ZCE8 Ensembl:ENSBTAT00000011016
GeneID:518045 KEGG:bta:518045 CTD:9939 HOGENOM:HOG000183826
HOVERGEN:HBG055173 InParanoid:Q3ZCE8 KO:K12876 OMA:WILFVTS
OrthoDB:EOG42822W NextBio:20872569 Uniprot:Q3ZCE8
Length = 174
Score = 102 (41.0 bits), Expect = 0.00020, P = 0.00020
Identities = 28/89 (31%), Positives = 47/89 (52%)
Query: 16 SIESGTKLYISNLEYGVSNEDIKELFSEVGELKRCSVHFDR-SGRSKGTAEVVLTRRADA 74
S+E G L+++ + + EDI + F+E GE+K ++ DR +G KG V +A
Sbjct: 69 SVE-GWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEA 127
Query: 75 IAAVKRYNNVQLDGKPMKIEIIGTNIGPP 103
AA++ N L G+P+ ++ GPP
Sbjct: 128 QAAMEGLNGQDLMGQPISVDWCFVR-GPP 155
>UNIPROTKB|F6XAE9 [details] [associations]
symbol:RBM8A "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0006396 "RNA processing" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR008111 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR01738
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0005737
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0006396
GeneTree:ENSGT00550000074641 CTD:9939 KO:K12876 OMA:WILFVTS
Ensembl:ENSCAFT00000017835 EMBL:AAEX03011037 RefSeq:XP_533035.1
ProteinModelPortal:F6XAE9 GeneID:475827 KEGG:cfa:475827
Uniprot:F6XAE9
Length = 174
Score = 102 (41.0 bits), Expect = 0.00020, P = 0.00020
Identities = 28/89 (31%), Positives = 47/89 (52%)
Query: 16 SIESGTKLYISNLEYGVSNEDIKELFSEVGELKRCSVHFDR-SGRSKGTAEVVLTRRADA 74
S+E G L+++ + + EDI + F+E GE+K ++ DR +G KG V +A
Sbjct: 69 SVE-GWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEA 127
Query: 75 IAAVKRYNNVQLDGKPMKIEIIGTNIGPP 103
AA++ N L G+P+ ++ GPP
Sbjct: 128 QAAMEGLNGQDLMGQPISVDWCFVR-GPP 155
>UNIPROTKB|Q9Y5S9 [details] [associations]
symbol:RBM8A "RNA-binding protein 8A" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0006417
"regulation of translation" evidence=IEA] [GO:0016607 "nuclear
speck" evidence=IEA] [GO:0005634 "nucleus" evidence=IDA;NAS]
[GO:0005737 "cytoplasm" evidence=NAS] [GO:0003729 "mRNA binding"
evidence=NAS] [GO:0003723 "RNA binding" evidence=NAS] [GO:0005515
"protein binding" evidence=IPI] [GO:0035145 "exon-exon junction
complex" evidence=IDA] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=IC;TAS] [GO:0071013 "catalytic step 2 spliceosome"
evidence=IDA] [GO:0000184 "nuclear-transcribed mRNA catabolic
process, nonsense-mediated decay" evidence=IMP;TAS] [GO:0005654
"nucleoplasm" evidence=TAS] [GO:0005829 "cytosol" evidence=TAS]
[GO:0006366 "transcription from RNA polymerase II promoter"
evidence=TAS] [GO:0006369 "termination of RNA polymerase II
transcription" evidence=TAS] [GO:0006406 "mRNA export from nucleus"
evidence=TAS] [GO:0008380 "RNA splicing" evidence=TAS] [GO:0010467
"gene expression" evidence=TAS] [GO:0016070 "RNA metabolic process"
evidence=TAS] [GO:0016071 "mRNA metabolic process" evidence=TAS]
[GO:0031124 "mRNA 3'-end processing" evidence=TAS] [GO:0005730
"nucleolus" evidence=IDA] Reactome:REACT_71 Reactome:REACT_21257
InterPro:IPR000504 InterPro:IPR008111 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR01738 PROSITE:PS50102 SMART:SM00360
GO:GO:0005829 GO:GO:0005654 GO:GO:0006417 GO:GO:0000184
GO:GO:0000166 GO:GO:0016607 Reactome:REACT_1675 GO:GO:0003729
Gene3D:3.30.70.330 TCDB:3.A.18.1.1 GO:GO:0006406 EMBL:AL160282
GO:GO:0000398 GO:GO:0071013 Reactome:REACT_1788 eggNOG:COG0724
GO:GO:0035145 PDB:2HYI PDB:2J0Q PDB:2J0S PDB:2XB2 PDB:3EX7
PDBsum:2HYI PDBsum:2J0Q PDBsum:2J0S PDBsum:2XB2 PDBsum:3EX7
GO:GO:0006369 GO:GO:0031124 Reactome:REACT_78 EMBL:CH471244
PDB:1P27 PDBsum:1P27 CTD:9939 HOGENOM:HOG000183826
HOVERGEN:HBG055173 KO:K12876 OMA:WILFVTS OrthoDB:EOG42822W
EMBL:AF127761 EMBL:AF198620 EMBL:AF231511 EMBL:AF231512
EMBL:AF299118 EMBL:AF403012 EMBL:AF182415 EMBL:AF161463
EMBL:CR541823 EMBL:CR541805 EMBL:AK075009 EMBL:BC017088
IPI:IPI00001757 IPI:IPI00216659 RefSeq:NP_005096.1
RefSeq:XP_003960226.1 UniGene:Hs.591455 ProteinModelPortal:Q9Y5S9
SMR:Q9Y5S9 DIP:DIP-33070N IntAct:Q9Y5S9 MINT:MINT-265248
STRING:Q9Y5S9 PhosphoSite:Q9Y5S9 DMDM:10720244 PaxDb:Q9Y5S9
PRIDE:Q9Y5S9 DNASU:9939 Ensembl:ENST00000330165
Ensembl:ENST00000369307 Ensembl:ENST00000578414
Ensembl:ENST00000583313 GeneID:101060541 GeneID:9939
KEGG:hsa:101060541 KEGG:hsa:9939 UCSC:uc001ent.2 UCSC:uc001enu.2
GeneCards:GC01P145507 HGNC:HGNC:9905 HPA:CAB012803 HPA:HPA018403
MIM:605313 neXtProt:NX_Q9Y5S9 Orphanet:3320 PharmGKB:PA34270
InParanoid:Q9Y5S9 PhylomeDB:Q9Y5S9 ChiTaRS:RBM8A
EvolutionaryTrace:Q9Y5S9 GenomeRNAi:9939 NextBio:37498
PMAP-CutDB:Q9Y5S9 Bgee:Q9Y5S9 CleanEx:HS_RBM8A
Genevestigator:Q9Y5S9 GermOnline:ENSG00000131795 Uniprot:Q9Y5S9
Length = 174
Score = 102 (41.0 bits), Expect = 0.00020, P = 0.00020
Identities = 28/89 (31%), Positives = 47/89 (52%)
Query: 16 SIESGTKLYISNLEYGVSNEDIKELFSEVGELKRCSVHFDR-SGRSKGTAEVVLTRRADA 74
S+E G L+++ + + EDI + F+E GE+K ++ DR +G KG V +A
Sbjct: 69 SVE-GWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEA 127
Query: 75 IAAVKRYNNVQLDGKPMKIEIIGTNIGPP 103
AA++ N L G+P+ ++ GPP
Sbjct: 128 QAAMEGLNGQDLMGQPISVDWCFVR-GPP 155
>RGD|1310099 [details] [associations]
symbol:Rbm8a "RNA binding motif protein 8A" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0000184 "nuclear-transcribed mRNA catabolic process,
nonsense-mediated decay" evidence=IEA;ISO] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0003729 "mRNA binding" evidence=ISO]
[GO:0005634 "nucleus" evidence=ISO] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0006417 "regulation of translation" evidence=IEA] [GO:0008380
"RNA splicing" evidence=IEA] [GO:0016607 "nuclear speck"
evidence=IEA] [GO:0035145 "exon-exon junction complex"
evidence=IEA;ISO] [GO:0051028 "mRNA transport" evidence=IEA]
[GO:0071013 "catalytic step 2 spliceosome" evidence=IEA;ISO]
[GO:0005730 "nucleolus" evidence=ISO] InterPro:IPR000504
InterPro:IPR008111 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR01738
PROSITE:PS50102 SMART:SM00360 RGD:1310099 GO:GO:0005737
GO:GO:0006417 GO:GO:0000184 GO:GO:0008380 GO:GO:0000166
GO:GO:0016607 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723
GO:GO:0051028 GO:GO:0071013 eggNOG:COG0724 GO:GO:0035145
GeneTree:ENSGT00550000074641 CTD:9939 HOGENOM:HOG000183826
KO:K12876 OMA:WILFVTS OrthoDB:EOG42822W EMBL:DQ359102
IPI:IPI00210002 RefSeq:NP_001258067.1 RefSeq:XP_001059872.1
UniGene:Rn.37716 ProteinModelPortal:Q27W01 SMR:Q27W01 STRING:Q27W01
PhosphoSite:Q27W01 PRIDE:Q27W01 Ensembl:ENSRNOT00000028807
GeneID:295284 KEGG:rno:295284 UCSC:RGD:1310099 InParanoid:Q27W01
NextBio:639304 Genevestigator:Q27W01 Uniprot:Q27W01
Length = 174
Score = 102 (41.0 bits), Expect = 0.00020, P = 0.00020
Identities = 28/89 (31%), Positives = 47/89 (52%)
Query: 16 SIESGTKLYISNLEYGVSNEDIKELFSEVGELKRCSVHFDR-SGRSKGTAEVVLTRRADA 74
S+E G L+++ + + EDI + F+E GE+K ++ DR +G KG V +A
Sbjct: 69 SVE-GWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEA 127
Query: 75 IAAVKRYNNVQLDGKPMKIEIIGTNIGPP 103
AA++ N L G+P+ ++ GPP
Sbjct: 128 QAAMEGLNGQDLMGQPISVDWCFVR-GPP 155
>UNIPROTKB|C1BY64 [details] [associations]
symbol:ncbp2 "Nuclear cap-binding protein subunit 2"
species:8010 "Esox lucius" [GO:0000340 "RNA 7-methylguanosine cap
binding" evidence=ISS] [GO:0006408 "snRNA export from nucleus"
evidence=ISS] [GO:0008380 "RNA splicing" evidence=ISS] [GO:0045292
"mRNA cis splicing, via spliceosome" evidence=ISS] [GO:0046833
"positive regulation of RNA export from nucleus" evidence=ISS]
InterPro:IPR000504 InterPro:IPR012677 InterPro:IPR027157
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0005737 GO:GO:0006417 GO:GO:0000184 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0031047 GO:GO:0000340 GO:GO:0051028
GO:GO:0006370 GO:GO:0045292 PANTHER:PTHR18847 GO:GO:0046833
GO:GO:0006408 EMBL:BT079543 ProteinModelPortal:C1BY64
Uniprot:C1BY64
Length = 155
Score = 100 (40.3 bits), Expect = 0.00021, P = 0.00021
Identities = 25/78 (32%), Positives = 44/78 (56%)
Query: 18 ESGTKLYISNLEYGVSNEDIKELFSEVGELKRCSVHFDRSGRSK-GTAEVVLTRRADAIA 76
+S T LY+ NL + + E + ELFS+ G++KR + D+ ++ G V RADA
Sbjct: 37 QSNT-LYVGNLSFYTTEEQVYELFSKSGDVKRIIIGLDKVKKTACGFCFVEYYTRADAEN 95
Query: 77 AVKRYNNVQLDGKPMKIE 94
A++ N +LD + ++ +
Sbjct: 96 AMRFVNGTRLDDRIIRTD 113
>MGI|MGI:1330294 [details] [associations]
symbol:Hnrnpab "heterogeneous nuclear ribonucleoprotein A/B"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0001837 "epithelial to mesenchymal transition"
evidence=IDA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=ISO] [GO:0003688 "DNA
replication origin binding" evidence=ISO] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=IDA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005515
"protein binding" evidence=IPI] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005737 "cytoplasm" evidence=IDA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0030529
"ribonucleoprotein complex" evidence=ISO] [GO:0043565
"sequence-specific DNA binding" evidence=IDA] [GO:0045892 "negative
regulation of transcription, DNA-dependent" evidence=ISO]
[GO:0045893 "positive regulation of transcription, DNA-dependent"
evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 MGI:MGI:1330294 GO:GO:0005634
GO:GO:0005737 GO:GO:0045893 GO:GO:0000166 GO:GO:0003677
Gene3D:3.30.70.330 GO:GO:0006351 GO:GO:0003723 GO:GO:0030529
GO:GO:0001837 UniGene:Mm.490267 eggNOG:COG0724 HOGENOM:HOG000234441
HOVERGEN:HBG002295 GeneTree:ENSGT00700000104347 KO:K13044
InterPro:IPR012956 Pfam:PF08143 CTD:3182 OrthoDB:EOG42BX9K
ChiTaRS:HNRNPAB EMBL:D90151 EMBL:L36663 EMBL:AK076132
IPI:IPI00117288 PIR:JQ0448 RefSeq:NP_034578.1 UniGene:Mm.280842
ProteinModelPortal:Q99020 SMR:Q99020 DIP:DIP-31415N IntAct:Q99020
MINT:MINT-4132837 STRING:Q99020 PhosphoSite:Q99020 PaxDb:Q99020
PRIDE:Q99020 Ensembl:ENSMUST00000074669 GeneID:15384 KEGG:mmu:15384
NextBio:288056 Bgee:Q99020 Genevestigator:Q99020
GermOnline:ENSMUSG00000020358 Uniprot:Q99020
Length = 285
Score = 106 (42.4 bits), Expect = 0.00022, P = 0.00022
Identities = 23/87 (26%), Positives = 45/87 (51%)
Query: 4 NGXXXXXXXRSSSIESGTKLYISNLEYGVSNEDIKELFSEVGELKRCSVHFD-RSGRSKG 62
NG S + E K+++ L + S +D+K+ F++ GE+ C++ D +GRS+G
Sbjct: 58 NGAEGDQINASKNEEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRG 117
Query: 63 TAEVVLTRRADAIAAVKRYNNVQLDGK 89
+L + + ++ V +LDG+
Sbjct: 118 FG-FILFKDSSSVEKVLDQKEHRLDGR 143
>UNIPROTKB|Q9QX80 [details] [associations]
symbol:Hnrnpab "Hnrpab protein" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0030529
"ribonucleoprotein complex" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:69255 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GO:GO:0030529 EMBL:CH473948 HOGENOM:HOG000234441 HOVERGEN:HBG002295
HSSP:Q14103 GeneTree:ENSGT00700000104347 KO:K13044
InterPro:IPR012956 Pfam:PF08143 CTD:3182 EMBL:AC105470
EMBL:AF216753 EMBL:BC066664 EMBL:AJ238855 IPI:IPI00212723
PIR:PC4375 PIR:PC4376 PIR:PC4377 RefSeq:NP_112620.2
RefSeq:XP_003750864.1 UniGene:Rn.1427 UniGene:Rn.217734 SMR:Q9QX80
STRING:Q9QX80 Ensembl:ENSRNOT00000033056 GeneID:100910156
GeneID:83498 KEGG:rno:100910156 KEGG:rno:83498 NextBio:615904
Genevestigator:Q9QX80 Uniprot:Q9QX80
Length = 285
Score = 106 (42.4 bits), Expect = 0.00022, P = 0.00022
Identities = 23/87 (26%), Positives = 45/87 (51%)
Query: 4 NGXXXXXXXRSSSIESGTKLYISNLEYGVSNEDIKELFSEVGELKRCSVHFD-RSGRSKG 62
NG S + E K+++ L + S +D+K+ F++ GE+ C++ D +GRS+G
Sbjct: 58 NGAEGDQINASKNEEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRG 117
Query: 63 TAEVVLTRRADAIAAVKRYNNVQLDGK 89
+L + + ++ V +LDG+
Sbjct: 118 FG-FILFKDSSSVEKVLDQKEHRLDGR 143
>UNIPROTKB|E2QV85 [details] [associations]
symbol:RBM8A "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0071013 "catalytic step 2 spliceosome"
evidence=IEA] [GO:0035145 "exon-exon junction complex"
evidence=IEA] [GO:0000184 "nuclear-transcribed mRNA catabolic
process, nonsense-mediated decay" evidence=IEA] [GO:0006396 "RNA
processing" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR008111
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR01738 PROSITE:PS50102
SMART:SM00360 GO:GO:0005737 GO:GO:0000184 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0006396 GO:GO:0071013
GO:GO:0035145 ProteinModelPortal:E2QV85 Ensembl:ENSCAFT00000017835
Uniprot:E2QV85
Length = 177
Score = 102 (41.0 bits), Expect = 0.00022, P = 0.00022
Identities = 28/89 (31%), Positives = 47/89 (52%)
Query: 16 SIESGTKLYISNLEYGVSNEDIKELFSEVGELKRCSVHFDR-SGRSKGTAEVVLTRRADA 74
S+E G L+++ + + EDI + F+E GE+K ++ DR +G KG V +A
Sbjct: 72 SVE-GWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEA 130
Query: 75 IAAVKRYNNVQLDGKPMKIEIIGTNIGPP 103
AA++ N L G+P+ ++ GPP
Sbjct: 131 QAAMEGLNGQDLMGQPISVDWCFVR-GPP 158
>UNIPROTKB|I3LI59 [details] [associations]
symbol:RBM8A "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0071013 "catalytic step 2 spliceosome" evidence=IEA]
[GO:0035145 "exon-exon junction complex" evidence=IEA] [GO:0000184
"nuclear-transcribed mRNA catabolic process, nonsense-mediated
decay" evidence=IEA] [GO:0006396 "RNA processing" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR008111 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR01738 PROSITE:PS50102 SMART:SM00360
GO:GO:0005737 GO:GO:0000184 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0006396 GO:GO:0071013 GO:GO:0035145
GeneTree:ENSGT00550000074641 OMA:WILFVTS EMBL:CU606940
Ensembl:ENSSSCT00000022923 Uniprot:I3LI59
Length = 177
Score = 102 (41.0 bits), Expect = 0.00022, P = 0.00022
Identities = 28/89 (31%), Positives = 47/89 (52%)
Query: 16 SIESGTKLYISNLEYGVSNEDIKELFSEVGELKRCSVHFDR-SGRSKGTAEVVLTRRADA 74
S+E G L+++ + + EDI + F+E GE+K ++ DR +G KG V +A
Sbjct: 72 SVE-GWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEA 130
Query: 75 IAAVKRYNNVQLDGKPMKIEIIGTNIGPP 103
AA++ N L G+P+ ++ GPP
Sbjct: 131 QAAMEGLNGQDLMGQPISVDWCFVR-GPP 158
>UNIPROTKB|P0CB38 [details] [associations]
symbol:PABPC4L "Polyadenylate-binding protein 4-like"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01628 EMBL:AC015631
EMBL:BX648831 IPI:IPI00885166 UniGene:Hs.49889
ProteinModelPortal:P0CB38 SMR:P0CB38 PhosphoSite:P0CB38
DMDM:259515737 PaxDb:P0CB38 PRIDE:P0CB38 Ensembl:ENST00000421491
UCSC:uc010ioe.3 GeneCards:GC04M135117 HGNC:HGNC:31955
neXtProt:NX_P0CB38 eggNOG:NOG246493 OrthoDB:EOG4M398T NextBio:83098
Bgee:P0CB38 Genevestigator:P0CB38 Uniprot:P0CB38
Length = 370
Score = 107 (42.7 bits), Expect = 0.00023, P = 0.00023
Identities = 25/76 (32%), Positives = 37/76 (48%)
Query: 20 GTKLYISNLEYGVSNEDIKELFSEVGELKRCSVHFDRSGRSKGTAEVVLTRRADAIAAVK 79
G KLYI NL+ + +E ++ FS G + R V G+SKG + + DA A+
Sbjct: 292 GVKLYIKNLDDTIDDEKLRNEFSSFGSISRVKV-MQEEGQSKGFGLICFSSPEDATKAMT 350
Query: 80 RYNNVQLDGKPMKIEI 95
N L KP+ I +
Sbjct: 351 EMNGRILGSKPLSIAL 366
>UNIPROTKB|H0YHU8 [details] [associations]
symbol:SART3 "Squamous cell carcinoma antigen recognized by
T-cells 3" species:9606 "Homo sapiens" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:AC008119 HGNC:HGNC:16860 ChiTaRS:SART3
EMBL:AC010206 Ensembl:ENST00000547397 Bgee:H0YHU8 Uniprot:H0YHU8
Length = 144
Score = 98 (39.6 bits), Expect = 0.00023, P = 0.00023
Identities = 30/96 (31%), Positives = 50/96 (52%)
Query: 14 SSSIESGTKLYISNLEYGVSNEDIKELFSEVGELKRCSVHFDRSGRSKGTAEVVLTRRAD 73
S+S+E KL+IS L + + E+++E+ G +K + +R+G+ KG A V +
Sbjct: 34 STSLEKH-KLFISGLPFSCTKEELEEICKAHGTVKDLRLVTNRAGKPKGLAYVEYENESQ 92
Query: 74 AIAAVKRYNNVQLDGKPMKIEIIGTNIG-PPAAVLP 108
A AV +++DG +K II I PP +P
Sbjct: 93 ASQAV-----MKMDGMTIKENIIKVAISNPPQRKVP 123
>UNIPROTKB|F5GY08 [details] [associations]
symbol:RBM7 "RNA-binding protein 7" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 HGNC:HGNC:9904
EMBL:AP002373 IPI:IPI01012450 ProteinModelPortal:F5GY08 SMR:F5GY08
Ensembl:ENST00000544582 ArrayExpress:F5GY08 Bgee:F5GY08
Uniprot:F5GY08
Length = 220
Score = 104 (41.7 bits), Expect = 0.00025, P = 0.00025
Identities = 28/104 (26%), Positives = 50/104 (48%)
Query: 14 SSSIESGTKLYISNLEYGVSNEDIKELFSEVGELKRCSVHFDRSGRSKGTAEVVLTRRAD 73
+++ E+ L++ NLE V+ E + ELF + G + + + D+ G+ K A V
Sbjct: 3 AAAAEADRTLFVGNLETKVTEELLFELFHQAGPVIKVKIPKDKDGKPKQFAFVNFKHEVS 62
Query: 74 AIAAVKRYNNVQLDGKPMKIEI-IGTNIGPPAAVLPITNVMYGN 116
A+ N ++L G+P+KI+ G++ P L GN
Sbjct: 63 VPYAMNLLNGIKLYGRPIKIQFRSGSSHAPQDVSLSYPQHHVGN 106
>POMBASE|SPAC57A7.04c [details] [associations]
symbol:pabp "mRNA export shuttling protein"
species:4896 "Schizosaccharomyces pombe" [GO:0002183 "cytoplasmic
translational initiation" evidence=NAS] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0005829
"cytosol" evidence=IDA] [GO:0006406 "mRNA export from nucleus"
evidence=IMP] [GO:0006446 "regulation of translational initiation"
evidence=ISO] [GO:0008143 "poly(A) RNA binding" evidence=TAS]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 PomBase:SPAC57A7.04c
GO:GO:0005829 GO:GO:0005634 EMBL:CU329670 GenomeReviews:CU329670_GR
GO:GO:0000166 GO:GO:0006446 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0006406 eggNOG:COG0724 GO:GO:0002183 GO:GO:0008143 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
HOGENOM:HOG000217922 OrthoDB:EOG4QJVWJ EMBL:M64603 PIR:T38950
RefSeq:NP_593377.1 ProteinModelPortal:P31209 SMR:P31209
IntAct:P31209 STRING:P31209 PRIDE:P31209
EnsemblFungi:SPAC57A7.04c.1 GeneID:2541505 KEGG:spo:SPAC57A7.04c
OMA:ANHECAQ NextBio:20802604 Uniprot:P31209
Length = 653
Score = 109 (43.4 bits), Expect = 0.00025, P = 0.00025
Identities = 26/76 (34%), Positives = 37/76 (48%)
Query: 20 GTKLYISNLEYGVSNEDIKELFSEVGELKRCSVHFDRSGRSKGTAEVVLTRRADAIAAVK 79
G L+I NL+ V +E +K FS G + + D G+SKG V T +A AV
Sbjct: 363 GVNLFIKNLQDEVDDERLKAEFSAFGTITSAKIMTDEQGKSKGFGFVCYTTPEEANKAVT 422
Query: 80 RYNNVQLDGKPMKIEI 95
N L GKP+ + +
Sbjct: 423 EMNQRMLAGKPLYVAL 438
>UNIPROTKB|J3KTH5 [details] [associations]
symbol:PABPC4L "Polyadenylate-binding protein 4-like"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 KO:K13126 TIGRFAMs:TIGR01628
EMBL:AC015631 UniGene:Hs.49889 HGNC:HGNC:31955
RefSeq:NP_001108206.2 ProteinModelPortal:J3KTH5
Ensembl:ENST00000529122 GeneID:132430 KEGG:hsa:132430 CTD:132430
Uniprot:J3KTH5
Length = 428
Score = 107 (42.7 bits), Expect = 0.00029, P = 0.00029
Identities = 25/76 (32%), Positives = 37/76 (48%)
Query: 20 GTKLYISNLEYGVSNEDIKELFSEVGELKRCSVHFDRSGRSKGTAEVVLTRRADAIAAVK 79
G KLYI NL+ + +E ++ FS G + R V G+SKG + + DA A+
Sbjct: 350 GVKLYIKNLDDTIDDEKLRNEFSSFGSISRVKV-MQEEGQSKGFGLICFSSPEDATKAMT 408
Query: 80 RYNNVQLDGKPMKIEI 95
N L KP+ I +
Sbjct: 409 EMNGRILGSKPLSIAL 424
>UNIPROTKB|K7ENX8 [details] [associations]
symbol:CIRBP "Cold-inducible RNA-binding protein"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 Gene3D:3.30.70.330 EMBL:AC004221 EMBL:AC004258
HGNC:HGNC:1982 Ensembl:ENST00000589266 Uniprot:K7ENX8
Length = 89
Score = 89 (36.4 bits), Expect = 0.00029, P = 0.00029
Identities = 19/74 (25%), Positives = 40/74 (54%)
Query: 22 KLYISNLEYGVSNEDIKELFSEVGELKRCSVHFDR-SGRSKGTAEVVLTRRADAIAAVKR 80
KL++ L + + + ++++FS+ G++ V DR + RS+G V DA A+
Sbjct: 7 KLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMA 66
Query: 81 YNNVQLDGKPMKIE 94
N +DG+ ++++
Sbjct: 67 MNGKSVDGRQIRVD 80
>UNIPROTKB|E9PTS0 [details] [associations]
symbol:Hnrnpab "Protein Hnrnpab" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:69255 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
InterPro:IPR012956 Pfam:PF08143 EMBL:AC105470 IPI:IPI00951862
Ensembl:ENSRNOT00000065584 ArrayExpress:E9PTS0 Uniprot:E9PTS0
Length = 331
Score = 106 (42.4 bits), Expect = 0.00029, P = 0.00029
Identities = 23/87 (26%), Positives = 45/87 (51%)
Query: 4 NGXXXXXXXRSSSIESGTKLYISNLEYGVSNEDIKELFSEVGELKRCSVHFD-RSGRSKG 62
NG S + E K+++ L + S +D+K+ F++ GE+ C++ D +GRS+G
Sbjct: 57 NGAEGDQINASKNEEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRG 116
Query: 63 TAEVVLTRRADAIAAVKRYNNVQLDGK 89
+L + + ++ V +LDG+
Sbjct: 117 FG-FILFKDSSSVEKVLDQKEHRLDGR 142
>UNIPROTKB|B1AM48 [details] [associations]
symbol:ELAVL2 "ELAV-like protein 2" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR006548 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 HOVERGEN:HBG002295 HOGENOM:HOG000231162
TIGRFAMs:TIGR01661 EMBL:AL161628 EMBL:AL445623 UniGene:Hs.166109
HGNC:HGNC:3313 OrthoDB:EOG4JHCFV IPI:IPI00184721 SMR:B1AM48
Ensembl:ENST00000440102 Uniprot:B1AM48
Length = 189
Score = 102 (41.0 bits), Expect = 0.00029, P = 0.00029
Identities = 28/97 (28%), Positives = 48/97 (49%)
Query: 4 NGXXXXXXXRSSSIESG------TKLYISNLEYGVSNEDIKELFSEVGELKRCSVHFDR- 56
NG SS ++SG T L ++ L ++ E++K LF +GE++ C + D+
Sbjct: 16 NGPTTINNNCSSPVDSGNTEDSKTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKI 75
Query: 57 SGRSKGTAEVVLTRRADAIAAVKRYNNVQLDGKPMKI 93
+G+S G V DA A+ N ++L K +K+
Sbjct: 76 TGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKV 112
>UNIPROTKB|Q9QX81 [details] [associations]
symbol:Hnrnpab "RCG34663, isoform CRA_a" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0001837 "epithelial to mesenchymal transition" evidence=ISS]
[GO:0005634 "nucleus" evidence=ISS] [GO:0005737 "cytoplasm"
evidence=ISS] [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
[GO:0045893 "positive regulation of transcription, DNA-dependent"
evidence=ISS] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=ISS] [GO:0043565
"sequence-specific DNA binding" evidence=ISS] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:69255 GO:GO:0005634 GO:GO:0005737 GO:GO:0045893 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0030529 GO:GO:0001837
EMBL:CH473948 HOGENOM:HOG000234441 HOVERGEN:HBG002295 HSSP:Q14103
GeneTree:ENSGT00700000104347 KO:K13044 InterPro:IPR012956
Pfam:PF08143 OMA:FILFKDP OrthoDB:EOG42BX9K EMBL:AC105470 PIR:PC4375
PIR:PC4376 PIR:PC4377 UniGene:Rn.1427 UniGene:Rn.217734
GeneID:100910156 KEGG:rno:100910156 EMBL:AJ238854 IPI:IPI00212724
RefSeq:XP_003750865.1 SMR:Q9QX81 STRING:Q9QX81
Ensembl:ENSRNOT00000004885 InParanoid:Q9QX81 Genevestigator:Q9QX81
Uniprot:Q9QX81
Length = 332
Score = 106 (42.4 bits), Expect = 0.00029, P = 0.00029
Identities = 23/87 (26%), Positives = 45/87 (51%)
Query: 4 NGXXXXXXXRSSSIESGTKLYISNLEYGVSNEDIKELFSEVGELKRCSVHFD-RSGRSKG 62
NG S + E K+++ L + S +D+K+ F++ GE+ C++ D +GRS+G
Sbjct: 58 NGAEGDQINASKNEEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRG 117
Query: 63 TAEVVLTRRADAIAAVKRYNNVQLDGK 89
+L + + ++ V +LDG+
Sbjct: 118 FG-FILFKDSSSVEKVLDQKEHRLDGR 143
>UNIPROTKB|D6RBQ9 [details] [associations]
symbol:HNRNPD "Heterogeneous nuclear ribonucleoprotein D0"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
HOGENOM:HOG000234441 EMBL:AC124016 HGNC:HGNC:5036 ChiTaRS:HNRNPD
InterPro:IPR012956 Pfam:PF08143 IPI:IPI00963980
ProteinModelPortal:D6RBQ9 SMR:D6RBQ9 Ensembl:ENST00000503822
ArrayExpress:D6RBQ9 Bgee:D6RBQ9 Uniprot:D6RBQ9
Length = 155
Score = 99 (39.9 bits), Expect = 0.00030, P = 0.00030
Identities = 23/77 (29%), Positives = 44/77 (57%)
Query: 14 SSSIESGTKLYISNLEYGVSNEDIKELFSEVGELKRCSVHFDR-SGRSKGTAEVVLTRRA 72
S + E K++I L + + +D+K+ FS+ GE+ C++ D +GRS+G VL + +
Sbjct: 71 SKNEEDEGKMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFG-FVLFKES 129
Query: 73 DAIAAVKRYNNVQLDGK 89
+++ V +L+GK
Sbjct: 130 ESVDKVMDQKEHKLNGK 146
>ZFIN|ZDB-GENE-020419-31 [details] [associations]
symbol:ncbp2 "nuclear cap binding protein subunit 2"
species:7955 "Danio rerio" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000339 "RNA cap binding" evidence=IEA]
[GO:0045292 "mRNA cis splicing, via spliceosome" evidence=IEA;ISS]
[GO:0005846 "nuclear cap binding complex" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0005622 "intracellular"
evidence=ISS] [GO:0008380 "RNA splicing" evidence=IEA;ISS]
[GO:0046833 "positive regulation of RNA export from nucleus"
evidence=ISS] [GO:0000340 "RNA 7-methylguanosine cap binding"
evidence=ISS] [GO:0006408 "snRNA export from nucleus" evidence=ISS]
[GO:0000184 "nuclear-transcribed mRNA catabolic process,
nonsense-mediated decay" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0006417 "regulation of translation" evidence=IEA]
[GO:0031047 "gene silencing by RNA" evidence=IEA] [GO:0051028 "mRNA
transport" evidence=IEA] [GO:0006370 "7-methylguanosine mRNA
capping" evidence=IEA] [GO:0006810 "transport" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 InterPro:IPR027157
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 ZFIN:ZDB-GENE-020419-31
GO:GO:0005634 GO:GO:0005737 GO:GO:0006417 GO:GO:0000184
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0031047 GO:GO:0000340
GO:GO:0051028 eggNOG:COG0724 GO:GO:0006370 GO:GO:0045292
HOGENOM:HOG000217589 OrthoDB:EOG470TJG PANTHER:PTHR18847
HSSP:P52298 KO:K12883 CTD:22916 GeneTree:ENSGT00390000003197
OMA:RQDYDPA GO:GO:0046833 GO:GO:0006408 EMBL:AY099530 EMBL:AL953867
EMBL:BC083529 IPI:IPI00487113 RefSeq:NP_775356.1 UniGene:Dr.83993
ProteinModelPortal:Q8JGR6 SMR:Q8JGR6 STRING:Q8JGR6
Ensembl:ENSDART00000008365 GeneID:192325 KEGG:dre:192325
InParanoid:Q8JGR6 NextBio:20797161 Bgee:Q8JGR6 Uniprot:Q8JGR6
Length = 155
Score = 99 (39.9 bits), Expect = 0.00030, P = 0.00030
Identities = 24/78 (30%), Positives = 44/78 (56%)
Query: 18 ESGTKLYISNLEYGVSNEDIKELFSEVGELKRCSVHFDRSGRSK-GTAEVVLTRRADAIA 76
+S T LY+ NL + + E + ELF++ G++KR + D+ ++ G V RADA
Sbjct: 37 QSAT-LYVGNLSFYTTEEQVHELFAKCGDVKRIIIGLDKIKKTACGFCFVEYYTRADAEN 95
Query: 77 AVKRYNNVQLDGKPMKIE 94
A++ N +LD + ++ +
Sbjct: 96 AMRFVNGTRLDDRIIRTD 113
>UNIPROTKB|H3BNY3 [details] [associations]
symbol:PABPC3 "Polyadenylate-binding protein 3"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 EMBL:AL359757 TIGRFAMs:TIGR01628
HGNC:HGNC:8556 ProteinModelPortal:H3BNY3 SMR:H3BNY3
Ensembl:ENST00000569397 Bgee:H3BNY3 Uniprot:H3BNY3
Length = 347
Score = 106 (42.4 bits), Expect = 0.00032, P = 0.00032
Identities = 29/96 (30%), Positives = 44/96 (45%)
Query: 2 IFNGXXXXXXXRSSSIESGTK----LYISNLEYGVSNEDIKELFSEVGELKRCSVHFDRS 57
+F G R + + + K +YI N + +E +K+LF + G V D S
Sbjct: 168 VFVGQFKSRKEREAELGARAKEFPNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDES 227
Query: 58 GRSKGTAEVVLTRRADAIAAVKRYNNVQLDGKPMKI 93
G+SKG V R DA AV N +L+GK + +
Sbjct: 228 GKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYV 263
>UNIPROTKB|F1N209 [details] [associations]
symbol:RBM11 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 OMA:YRFGSSR
GeneTree:ENSGT00690000102191 EMBL:DAAA02000527 IPI:IPI00911874
RefSeq:XP_003581718.1 UniGene:Bt.104085 Ensembl:ENSBTAT00000048660
GeneID:100850231 KEGG:bta:100850231 NextBio:20926533 Uniprot:F1N209
Length = 246
Score = 104 (41.7 bits), Expect = 0.00033, P = 0.00033
Identities = 32/117 (27%), Positives = 54/117 (46%)
Query: 18 ESGTKLYISNLEYGVSNEDIKELFSEVGELKRCSVHFDRSGRSKGTAEVVLTRRADAIAA 77
E+ +++ NLE V E + ELF + G L + ++ DR G+ K V A
Sbjct: 7 EADRTVFVGNLEARVREEILYELFLQAGPLTKVTICKDREGKPKSFGFVCFKHPESVSYA 66
Query: 78 VKRYNNVQLDGKPMKIEI-IGTNIG-PPA-----AVLPITNVMYGNEIGMTRSRLRM 127
+ N ++L G+P+ ++ G++ PA + + I + Y NE M RS M
Sbjct: 67 IALLNGIRLYGRPINVQYRFGSSRSCEPANQSFESCVKINSHSYRNEEAMGRSSFSM 123
>TAIR|locus:2119495 [details] [associations]
symbol:GR-RBP2 "AT4G13850" species:3702 "Arabidopsis
thaliana" [GO:0003723 "RNA binding" evidence=ISS;IDA] [GO:0005739
"mitochondrion" evidence=ISM;IDA] [GO:0009409 "response to cold"
evidence=IGI;IEP;IMP] [GO:0003690 "double-stranded DNA binding"
evidence=IDA] [GO:0003697 "single-stranded DNA binding"
evidence=IDA] [GO:0009414 "response to water deprivation"
evidence=IEP] [GO:0005524 "ATP binding" evidence=IDA] [GO:0001072
"RNA binding transcription antitermination factor activity"
evidence=IDA] [GO:0006970 "response to osmotic stress"
evidence=IMP] [GO:0009631 "cold acclimation" evidence=IMP]
[GO:0009651 "response to salt stress" evidence=IMP] [GO:0009845
"seed germination" evidence=IMP] [GO:0031564 "transcription
antitermination" evidence=IDA] [GO:0005507 "copper ion binding"
evidence=IDA] [GO:0005794 "Golgi apparatus" evidence=RCA]
[GO:0006364 "rRNA processing" evidence=RCA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005739 GO:GO:0005524 EMBL:CP002687 GenomeReviews:CT486007_GR
GO:GO:0009409 Gene3D:3.30.70.330 GO:GO:0005507 GO:GO:0003723
GO:GO:0006970 GO:GO:0009845 GO:GO:0003690 GO:GO:0003697
eggNOG:COG0724 EMBL:AL035528 EMBL:AL161537 HOGENOM:HOG000276232
EMBL:AJ002892 EMBL:AY072361 EMBL:BT002197 EMBL:AY085621 EMBL:X69377
EMBL:Z18189 IPI:IPI00527583 PIR:S31443 PIR:T05254
RefSeq:NP_193121.1 UniGene:At.15585 UniGene:At.2
ProteinModelPortal:Q9SVM8 SMR:Q9SVM8 IntAct:Q9SVM8 STRING:Q9SVM8
PaxDb:Q9SVM8 PRIDE:Q9SVM8 ProMEX:Q9SVM8 EnsemblPlants:AT4G13850.1
GeneID:827019 KEGG:ath:AT4G13850 GeneFarm:3949 TAIR:At4g13850
InParanoid:Q9SVM8 OMA:ISEMDGK PhylomeDB:Q9SVM8 ProtClustDB:PLN03134
Genevestigator:Q9SVM8 Uniprot:Q9SVM8
Length = 158
Score = 99 (39.9 bits), Expect = 0.00035, P = 0.00035
Identities = 23/86 (26%), Positives = 42/86 (48%)
Query: 21 TKLYISNLEYGVSNEDIKELFSEVGELKRCSVHFDR-SGRSKGTAEVVLTRRADAIAAVK 79
TKL+I L +G + +++ F+ G++ V DR +GRS+G V A AA+
Sbjct: 35 TKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAIS 94
Query: 80 RYNNVQLDGKPMKIEIIGTNIGPPAA 105
+ +L+G+ +++ P A
Sbjct: 95 EMDGKELNGRHIRVNPANDRPSAPRA 120
>UNIPROTKB|Q5R995 [details] [associations]
symbol:CELF1 "CUGBP Elav-like family member 1" species:9601
"Pongo abelii" [GO:0003723 "RNA binding" evidence=ISS] [GO:0043484
"regulation of RNA splicing" evidence=ISS] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0005737 GO:GO:0008380 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0043484
HSSP:Q92879 HOVERGEN:HBG107646 KO:K13207 CTD:10658 EMBL:CR859496
RefSeq:NP_001125976.1 UniGene:Pab.4290 ProteinModelPortal:Q5R995
SMR:Q5R995 PRIDE:Q5R995 GeneID:100172914 KEGG:pon:100172914
InParanoid:Q5R995 Uniprot:Q5R995
Length = 513
Score = 107 (42.7 bits), Expect = 0.00037, P = 0.00037
Identities = 26/89 (29%), Positives = 48/89 (53%)
Query: 13 RSSSIESGTKLYISNLEYGVSNEDIKELFSEVGELKRCSVHFDRSGRSKGTAEVVLTRRA 72
+++++E KL+I + + DI+ +FS G+++ C + + G S+G A V T RA
Sbjct: 128 KNNAVED-RKLFIGMISKKCTENDIRVMFSSFGQIEECRILWGPDGLSRGCALVTFTTRA 186
Query: 73 DAIAAVKRYNNVQ-LDG--KPMKIEIIGT 98
A A+K + Q ++G PM ++ T
Sbjct: 187 MAQTAIKAMHQAQTMEGCSSPMVVKFADT 215
>UNIPROTKB|Q74DJ2 [details] [associations]
symbol:GSU1324 "RNA-binding protein" species:243231
"Geobacter sulfurreducens PCA" [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:AE017180 GenomeReviews:AE017180_GR HSSP:P19339
HOGENOM:HOG000276232 RefSeq:NP_952377.1 ProteinModelPortal:Q74DJ2
GeneID:2685944 KEGG:gsu:GSU1324 PATRIC:22025425 OMA:HMSYEAT
ProtClustDB:CLSK828302 BioCyc:GSUL243231:GH27-1311-MONOMER
Uniprot:Q74DJ2
Length = 107
Score = 88 (36.0 bits), Expect = 0.00038, P = 0.00038
Identities = 22/83 (26%), Positives = 42/83 (50%)
Query: 22 KLYISNLEYGVSNEDIKELFSEVGELKRCSVHFD-RSGRSKGTAEVVLTRRADAIAAVKR 80
+LY+ ++ Y + +D++ LFS G + + D +GRSKG V + +A A++
Sbjct: 4 ELYVGHMSYEATEDDLRRLFSVAGTVTSVHIITDPETGRSKGCGYVRMLTEEEAKEAIET 63
Query: 81 YNNVQLDGKPMKIEIIGTNIGPP 103
LDG ++ +I ++ P
Sbjct: 64 -----LDGALLRNRVITVSVARP 81
>TIGR_CMR|GSU_1324 [details] [associations]
symbol:GSU_1324 "RNA-binding protein" species:243231
"Geobacter sulfurreducens PCA" [GO:0003723 "RNA binding"
evidence=ISS] [GO:0008150 "biological_process" evidence=ND]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AE017180 GenomeReviews:AE017180_GR HSSP:P19339
HOGENOM:HOG000276232 RefSeq:NP_952377.1 ProteinModelPortal:Q74DJ2
GeneID:2685944 KEGG:gsu:GSU1324 PATRIC:22025425 OMA:HMSYEAT
ProtClustDB:CLSK828302 BioCyc:GSUL243231:GH27-1311-MONOMER
Uniprot:Q74DJ2
Length = 107
Score = 88 (36.0 bits), Expect = 0.00038, P = 0.00038
Identities = 22/83 (26%), Positives = 42/83 (50%)
Query: 22 KLYISNLEYGVSNEDIKELFSEVGELKRCSVHFD-RSGRSKGTAEVVLTRRADAIAAVKR 80
+LY+ ++ Y + +D++ LFS G + + D +GRSKG V + +A A++
Sbjct: 4 ELYVGHMSYEATEDDLRRLFSVAGTVTSVHIITDPETGRSKGCGYVRMLTEEEAKEAIET 63
Query: 81 YNNVQLDGKPMKIEIIGTNIGPP 103
LDG ++ +I ++ P
Sbjct: 64 -----LDGALLRNRVITVSVARP 81
>UNIPROTKB|Q9Y580 [details] [associations]
symbol:RBM7 "RNA-binding protein 7" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0007126 "meiosis" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0007126 EMBL:CH471065 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 CTD:10179 eggNOG:NOG273605
HOGENOM:HOG000059553 HOVERGEN:HBG009324 KO:K13188 OrthoDB:EOG4W0XDN
EMBL:AF156098 EMBL:AK002015 EMBL:AK312619 EMBL:BC034381
IPI:IPI00001134 RefSeq:NP_057174.1 UniGene:Hs.7527
ProteinModelPortal:Q9Y580 SMR:Q9Y580 DIP:DIP-48833N IntAct:Q9Y580
MINT:MINT-1453692 STRING:Q9Y580 PhosphoSite:Q9Y580 DMDM:9978697
PRIDE:Q9Y580 DNASU:10179 Ensembl:ENST00000540163 GeneID:10179
KEGG:hsa:10179 UCSC:uc001pov.3 GeneCards:GC11P114305 HGNC:HGNC:9904
HPA:HPA013993 MIM:612413 neXtProt:NX_Q9Y580 PharmGKB:PA34269
PhylomeDB:Q9Y580 GenomeRNAi:10179 NextBio:38534 ArrayExpress:Q9Y580
Bgee:Q9Y580 CleanEx:HS_RBM7 Genevestigator:Q9Y580
GermOnline:ENSG00000076053 Uniprot:Q9Y580
Length = 266
Score = 104 (41.7 bits), Expect = 0.00040, P = 0.00040
Identities = 28/104 (26%), Positives = 50/104 (48%)
Query: 14 SSSIESGTKLYISNLEYGVSNEDIKELFSEVGELKRCSVHFDRSGRSKGTAEVVLTRRAD 73
+++ E+ L++ NLE V+ E + ELF + G + + + D+ G+ K A V
Sbjct: 3 AAAAEADRTLFVGNLETKVTEELLFELFHQAGPVIKVKIPKDKDGKPKQFAFVNFKHEVS 62
Query: 74 AIAAVKRYNNVQLDGKPMKIEI-IGTNIGPPAAVLPITNVMYGN 116
A+ N ++L G+P+KI+ G++ P L GN
Sbjct: 63 VPYAMNLLNGIKLYGRPIKIQFRSGSSHAPQDVSLSYPQHHVGN 106
>UNIPROTKB|J3KPD3 [details] [associations]
symbol:RBM7 "RNA-binding protein 7" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CH471065 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
OMA:DRHYSRE UniGene:Hs.7527 HGNC:HGNC:9904 EMBL:AP002373
ProteinModelPortal:J3KPD3 Ensembl:ENST00000375490 Uniprot:J3KPD3
Length = 267
Score = 104 (41.7 bits), Expect = 0.00040, P = 0.00040
Identities = 28/104 (26%), Positives = 50/104 (48%)
Query: 14 SSSIESGTKLYISNLEYGVSNEDIKELFSEVGELKRCSVHFDRSGRSKGTAEVVLTRRAD 73
+++ E+ L++ NLE V+ E + ELF + G + + + D+ G+ K A V
Sbjct: 3 AAAAEADRTLFVGNLETKVTEELLFELFHQAGPVIKVKIPKDKDGKPKQFAFVNFKHEVS 62
Query: 74 AIAAVKRYNNVQLDGKPMKIEI-IGTNIGPPAAVLPITNVMYGN 116
A+ N ++L G+P+KI+ G++ P L GN
Sbjct: 63 VPYAMNLLNGIKLYGRPIKIQFRSGSSHAPQDVSLSYPQHHVGN 106
>TAIR|locus:2122009 [details] [associations]
symbol:RBP31 "AT4G24770" species:3702 "Arabidopsis
thaliana" [GO:0003723 "RNA binding" evidence=ISS;IDA;TAS]
[GO:0009507 "chloroplast" evidence=ISM;IDA] [GO:0009579 "thylakoid"
evidence=IDA] [GO:0009941 "chloroplast envelope" evidence=IDA]
[GO:0009535 "chloroplast thylakoid membrane" evidence=IDA]
[GO:0009570 "chloroplast stroma" evidence=IDA] [GO:0045087 "innate
immune response" evidence=IDA] [GO:0008266 "poly(U) RNA binding"
evidence=IDA] [GO:0009451 "RNA modification" evidence=IMP]
[GO:0009073 "aromatic amino acid family biosynthetic process"
evidence=RCA] [GO:0009965 "leaf morphogenesis" evidence=RCA]
[GO:0016226 "iron-sulfur cluster assembly" evidence=RCA]
[GO:0030154 "cell differentiation" evidence=RCA] [GO:0045036
"protein targeting to chloroplast" evidence=RCA] [GO:0045893
"positive regulation of transcription, DNA-dependent" evidence=RCA]
[GO:0009631 "cold acclimation" evidence=IMP] [GO:0016553 "base
conversion or substitution editing" evidence=IMP] [GO:0043489 "RNA
stabilization" evidence=IMP] [GO:0006396 "RNA processing"
evidence=TAS] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0009570 EMBL:CP002687
GenomeReviews:CT486007_GR GO:GO:0008266 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0045087 GO:GO:0009941 GO:GO:0009631
GO:GO:0016553 GO:GO:0006396 GO:GO:0030529 EMBL:AL035356
EMBL:AL161562 GO:GO:0009535 eggNOG:COG0724 HOGENOM:HOG000276232
EMBL:M94554 EMBL:X65255 EMBL:U08467 EMBL:D31712 EMBL:D31713
IPI:IPI00523699 IPI:IPI00542634 IPI:IPI00760320 PIR:S28057
PIR:S53492 RefSeq:NP_194208.1 UniGene:At.38112 UniGene:At.70990
ProteinModelPortal:Q04836 SMR:Q04836 STRING:Q04836 PaxDb:Q04836
PRIDE:Q04836 ProMEX:Q04836 EnsemblPlants:AT4G24770.1 GeneID:828579
KEGG:ath:AT4G24770 GeneFarm:4009 TAIR:At4g24770 InParanoid:Q04836
OMA:NRYDLNG PhylomeDB:Q04836 ProtClustDB:CLSN2915857
Genevestigator:Q04836 GermOnline:AT4G24770 GO:GO:0043489
Uniprot:Q04836
Length = 329
Score = 105 (42.0 bits), Expect = 0.00040, P = 0.00040
Identities = 22/79 (27%), Positives = 45/79 (56%)
Query: 18 ESGTKLYISNLEYGVSNEDIKELFSEVGELKRCSVHFDR-SGRSKGTAEVVLTRRADAIA 76
E ++Y+ NL + V N +++LFSE G++ V +DR +GRS+G V ++ +
Sbjct: 241 EPAFRVYVGNLPWDVDNGRLEQLFSEHGKVVEARVVYDRETGRSRGFGFVTMSDVDELNE 300
Query: 77 AVKRYNNVQLDGKPMKIEI 95
A+ + L+G+ +++ +
Sbjct: 301 AISALDGQNLEGRAIRVNV 319
>SGD|S000006099 [details] [associations]
symbol:CBC2 "Small subunit of the heterodimeric cap binding
complex" species:4932 "Saccharomyces cerevisiae" [GO:0000398 "mRNA
splicing, via spliceosome" evidence=IMP] [GO:0045292 "mRNA cis
splicing, via spliceosome" evidence=IEA] [GO:0000339 "RNA cap
binding" evidence=IEA;ISS;IDA] [GO:0000243 "commitment complex"
evidence=IDA] [GO:0005846 "nuclear cap binding complex"
evidence=IEA;IDA] [GO:0005634 "nucleus" evidence=IEA] [GO:0048471
"perinuclear region of cytoplasm" evidence=IEA] [GO:0000184
"nuclear-transcribed mRNA catabolic process, nonsense-mediated
decay" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0008380 "RNA
splicing" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0006810 "transport" evidence=IEA] [GO:0051028 "mRNA transport"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 InterPro:IPR027157 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 SGD:S000006099 GO:GO:0048471 GO:GO:0000184
GO:GO:0000166 Gene3D:3.30.70.330 EMBL:BK006949 GO:GO:0051028
GO:GO:0000398 GO:GO:0000243 eggNOG:COG0724 GO:GO:0000339
HOGENOM:HOG000217589 PANTHER:PTHR18847 GO:GO:0005846 KO:K12883
GeneTree:ENSGT00390000003197 OrthoDB:EOG4W11PG EMBL:U39665
EMBL:Z73534 EMBL:AY692949 PIR:S65190 RefSeq:NP_015147.1
ProteinModelPortal:Q08920 SMR:Q08920 DIP:DIP-1117N IntAct:Q08920
MINT:MINT-552911 STRING:Q08920 PaxDb:Q08920 EnsemblFungi:YPL178W
GeneID:855925 KEGG:sce:YPL178W CYGD:YPL178w OMA:CGFCFII
NextBio:980654 Genevestigator:Q08920 GermOnline:YPL178W
Uniprot:Q08920
Length = 208
Score = 102 (41.0 bits), Expect = 0.00040, P = 0.00040
Identities = 26/81 (32%), Positives = 47/81 (58%)
Query: 16 SIESGTKLYISNLEYGVSNEDIKELFSEVGELKRCSVHFDRSGRSK-GTAEVVLTRRADA 74
S++S T +Y+ NL + S E I ELFS+ G +KR + DR + G ++ + +A
Sbjct: 42 SMKSST-IYVGNLSFYTSEEQIYELFSKCGTIKRIIMGLDRFKFTPCGFCFIIYSCPDEA 100
Query: 75 IAAVKRYNNVQLDGKPMKIEI 95
+ A+K ++ +LD K + I++
Sbjct: 101 LNALKYLSDTKLDEKTITIDL 121
>FB|FBgn0033378 [details] [associations]
symbol:tsu "tsunagi" species:7227 "Drosophila melanogaster"
[GO:0003729 "mRNA binding" evidence=ISS;NAS] [GO:0007310 "oocyte
dorsal/ventral axis specification" evidence=IMP] [GO:0007314
"oocyte anterior/posterior axis specification" evidence=IMP]
[GO:0005737 "cytoplasm" evidence=IDA] [GO:0000226 "microtubule
cytoskeleton organization" evidence=IMP] [GO:0007312 "oocyte
nucleus migration involved in oocyte dorsal/ventral axis
specification" evidence=IMP] [GO:0005634 "nucleus" evidence=IDA]
[GO:0007317 "regulation of pole plasm oskar mRNA localization"
evidence=IMP;IPI] [GO:0006406 "mRNA export from nucleus"
evidence=NAS] [GO:0005515 "protein binding" evidence=IPI]
[GO:0045451 "pole plasm oskar mRNA localization" evidence=TAS]
[GO:0046595 "establishment of pole plasm mRNA localization"
evidence=TAS] [GO:0006396 "RNA processing" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0007294
"germarium-derived oocyte fate determination" evidence=IMP]
[GO:0000398 "mRNA splicing, via spliceosome" evidence=IC]
[GO:0071013 "catalytic step 2 spliceosome" evidence=IDA]
[GO:0035145 "exon-exon junction complex" evidence=IPI] [GO:0007173
"epidermal growth factor receptor signaling pathway" evidence=IMP]
InterPro:IPR000504 InterPro:IPR008111 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR01738 PROSITE:PS50102 SMART:SM00360
EMBL:AE013599 GO:GO:0005737 GO:GO:0007173 GO:GO:0000226
GO:GO:0000166 GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0006406
GO:GO:0000398 GO:GO:0071013 GO:GO:0007312 eggNOG:COG0724
GO:GO:0045451 GO:GO:0035145 GO:GO:0007317
GeneTree:ENSGT00550000074641 PDB:1HL6 PDB:1OO0 PDB:1RK8 PDB:2X1G
PDBsum:1HL6 PDBsum:1OO0 PDBsum:1RK8 PDBsum:2X1G KO:K12876
OMA:WILFVTS EMBL:AF173550 EMBL:AY071005 RefSeq:NP_610454.2
UniGene:Dm.19884 ProteinModelPortal:Q9V535 SMR:Q9V535
DIP:DIP-24075N IntAct:Q9V535 MINT:MINT-816263 STRING:Q9V535
PaxDb:Q9V535 PRIDE:Q9V535 EnsemblMetazoa:FBtr0088567 GeneID:35924
KEGG:dme:Dmel_CG8781 UCSC:CG8781-RA CTD:110124 FlyBase:FBgn0033378
InParanoid:Q9V535 OrthoDB:EOG4N02X6 PhylomeDB:Q9V535
EvolutionaryTrace:Q9V535 GenomeRNAi:35924 NextBio:795852
Bgee:Q9V535 GermOnline:CG8781 GO:GO:0046595 Uniprot:Q9V535
Length = 165
Score = 99 (39.9 bits), Expect = 0.00045, P = 0.00045
Identities = 23/80 (28%), Positives = 46/80 (57%)
Query: 16 SIESGTKLYISNLEYGVSNEDIKELFSEVGELKRCSVHFDR-SGRSKGTAEVVLTRRADA 74
S+E G L+++++ ++I+E F + GE+K ++ DR +G SKG A V A
Sbjct: 69 SVE-GWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQA 127
Query: 75 IAAVKRYNNVQLDGKPMKIE 94
+AA + N ++ G+ ++++
Sbjct: 128 LAAKEALNGAEIMGQTIQVD 147
>UNIPROTKB|Q9DED4 [details] [associations]
symbol:cirbp-b "Cold-inducible RNA-binding protein B"
species:8355 "Xenopus laevis" [GO:0003729 "mRNA binding"
evidence=IDA] [GO:0003730 "mRNA 3'-UTR binding" evidence=ISS]
[GO:0005515 "protein binding" evidence=IPI] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0007369
"gastrulation" evidence=IMP] [GO:0009409 "response to cold"
evidence=ISS] [GO:0009790 "embryo development" evidence=IMP]
[GO:0016477 "cell migration" evidence=IMP] [GO:0019899 "enzyme
binding" evidence=IPI] [GO:0022008 "neurogenesis" evidence=IMP]
[GO:0045727 "positive regulation of translation" evidence=ISS]
[GO:0048255 "mRNA stabilization" evidence=IGI;IMP] [GO:0048793
"pronephros development" evidence=ISS] [GO:0060212 "negative
regulation of nuclear-transcribed mRNA poly(A) tail shortening"
evidence=IMP] [GO:0005840 "ribosome" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005737 GO:GO:0005654
GO:GO:0016477 GO:GO:0022008 GO:GO:0000166 GO:GO:0009409
Gene3D:3.30.70.330 GO:GO:0048255 GO:GO:0003730 GO:GO:0045727
GO:GO:0007369 GO:GO:0048793 HOVERGEN:HBG107480 GO:GO:0060212
EMBL:AB044535 EMBL:BC054250 RefSeq:NP_001079794.1 UniGene:Xl.8151
HSSP:P09651 ProteinModelPortal:Q9DED4 SMR:Q9DED4 MINT:MINT-274223
PRIDE:Q9DED4 GeneID:379484 KEGG:xla:379484 CTD:379484
Xenbase:XB-GENE-492785 KO:K13195 Uniprot:Q9DED4
Length = 166
Score = 99 (39.9 bits), Expect = 0.00047, P = 0.00047
Identities = 23/81 (28%), Positives = 43/81 (53%)
Query: 22 KLYISNLEYGVSNEDIKELFSEVGELKRCSVHFDR-SGRSKGTAEVVLTRRADAIAAVKR 80
KL+I L + + E ++++FS+ G++ V DR + RS+G V DA A+
Sbjct: 6 KLFIGGLNFDTNEESLEQVFSKYGQISEVVVVKDRETKRSRGFGFVTFENPDDAKDAMMA 65
Query: 81 YNNVQLDGKPMKIEIIGTNIG 101
N +DG+ ++++ G + G
Sbjct: 66 MNGKAVDGRQIRVDQAGKSSG 86
>UNIPROTKB|Q3ZBJ1 [details] [associations]
symbol:NCBP2 "Nuclear cap-binding protein subunit 2"
species:9913 "Bos taurus" [GO:0045292 "mRNA cis splicing, via
spliceosome" evidence=ISS] [GO:0006408 "snRNA export from nucleus"
evidence=ISS] [GO:0008380 "RNA splicing" evidence=ISS] [GO:0046833
"positive regulation of RNA export from nucleus" evidence=ISS]
[GO:0006446 "regulation of translational initiation" evidence=ISS]
[GO:0005654 "nucleoplasm" evidence=ISS] [GO:0000340 "RNA
7-methylguanosine cap binding" evidence=ISS] [GO:0005737
"cytoplasm" evidence=ISS] [GO:0000184 "nuclear-transcribed mRNA
catabolic process, nonsense-mediated decay" evidence=ISS]
[GO:0005845 "mRNA cap binding complex" evidence=ISS] [GO:0006370
"7-methylguanosine mRNA capping" evidence=ISS] [GO:0051028 "mRNA
transport" evidence=IEA] [GO:0031047 "gene silencing by RNA"
evidence=IEA] [GO:0005846 "nuclear cap binding complex"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 InterPro:IPR027157
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005737
GO:GO:0005654 GO:GO:0000184 GO:GO:0000166 GO:GO:0006446
Gene3D:3.30.70.330 GO:GO:0031047 GO:GO:0005845 GO:GO:0000340
GO:GO:0051028 eggNOG:COG0724 GO:GO:0006370 GO:GO:0045292
HOGENOM:HOG000217589 HOVERGEN:HBG052581 OrthoDB:EOG470TJG
PANTHER:PTHR18847 KO:K12883 EMBL:BC103267 IPI:IPI00687118
RefSeq:NP_001029568.1 UniGene:Bt.49382 ProteinModelPortal:Q3ZBJ1
SMR:Q3ZBJ1 STRING:Q3ZBJ1 PRIDE:Q3ZBJ1 Ensembl:ENSBTAT00000011684
GeneID:510872 KEGG:bta:510872 CTD:22916
GeneTree:ENSGT00390000003197 InParanoid:Q3ZBJ1 OMA:RQDYDPA
NextBio:20869659 GO:GO:0046833 GO:GO:0006408 Uniprot:Q3ZBJ1
Length = 156
Score = 98 (39.6 bits), Expect = 0.00048, P = 0.00048
Identities = 23/79 (29%), Positives = 43/79 (54%)
Query: 17 IESGTKLYISNLEYGVSNEDIKELFSEVGELKRCSVHFDRSGRSK-GTAEVVLTRRADAI 75
++ LY+ NL + + E I ELFS+ G++K+ + D+ ++ G V RADA
Sbjct: 36 LKKSCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAE 95
Query: 76 AAVKRYNNVQLDGKPMKIE 94
A++ N +LD + ++ +
Sbjct: 96 NAMRYINGTRLDDRIIRTD 114
>UNIPROTKB|E2RFC9 [details] [associations]
symbol:NCBP2 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0045292 "mRNA cis splicing, via spliceosome"
evidence=IEA] [GO:0006446 "regulation of translational initiation"
evidence=IEA] [GO:0006370 "7-methylguanosine mRNA capping"
evidence=IEA] [GO:0005845 "mRNA cap binding complex" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0005654 "nucleoplasm"
evidence=IEA] [GO:0000340 "RNA 7-methylguanosine cap binding"
evidence=IEA] [GO:0000184 "nuclear-transcribed mRNA catabolic
process, nonsense-mediated decay" evidence=IEA] [GO:0005846
"nuclear cap binding complex" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
InterPro:IPR027157 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005737 GO:GO:0005654 GO:GO:0000184 GO:GO:0000166
GO:GO:0006446 Gene3D:3.30.70.330 GO:GO:0005845 GO:GO:0000340
GO:GO:0006370 PANTHER:PTHR18847 KO:K12883 CTD:22916
GeneTree:ENSGT00390000003197 OMA:RQDYDPA EMBL:AAEX03017103
RefSeq:XP_535779.1 ProteinModelPortal:E2RFC9 SMR:E2RFC9
PRIDE:E2RFC9 Ensembl:ENSCAFT00000020794 GeneID:478603
KEGG:cfa:478603 NextBio:20853918 Uniprot:E2RFC9
Length = 156
Score = 98 (39.6 bits), Expect = 0.00048, P = 0.00048
Identities = 23/79 (29%), Positives = 43/79 (54%)
Query: 17 IESGTKLYISNLEYGVSNEDIKELFSEVGELKRCSVHFDRSGRSK-GTAEVVLTRRADAI 75
++ LY+ NL + + E I ELFS+ G++K+ + D+ ++ G V RADA
Sbjct: 36 LKKSCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAE 95
Query: 76 AAVKRYNNVQLDGKPMKIE 94
A++ N +LD + ++ +
Sbjct: 96 NAMRYINGTRLDDRIIRTD 114
>UNIPROTKB|P52298 [details] [associations]
symbol:NCBP2 "Nuclear cap-binding protein subunit 2"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0005846 "nuclear cap binding complex"
evidence=IEA] [GO:0031047 "gene silencing by RNA" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA;NAS] [GO:0006408 "snRNA export
from nucleus" evidence=ISS;NAS] [GO:0000340 "RNA 7-methylguanosine
cap binding" evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA]
[GO:0000184 "nuclear-transcribed mRNA catabolic process,
nonsense-mediated decay" evidence=IMP;IDA;TAS] [GO:0006370
"7-methylguanosine mRNA capping" evidence=IDA;TAS] [GO:0005845
"mRNA cap binding complex" evidence=IDA] [GO:0005654 "nucleoplasm"
evidence=IDA;TAS] [GO:0006446 "regulation of translational
initiation" evidence=IDA] [GO:0046833 "positive regulation of RNA
export from nucleus" evidence=ISS] [GO:0008380 "RNA splicing"
evidence=ISS;TAS] [GO:0005515 "protein binding" evidence=IPI]
[GO:0003723 "RNA binding" evidence=IDA] [GO:0000339 "RNA cap
binding" evidence=NAS] [GO:0045292 "mRNA cis splicing, via
spliceosome" evidence=IDA] [GO:0000387 "spliceosomal snRNP
assembly" evidence=TAS] [GO:0000398 "mRNA splicing, via
spliceosome" evidence=TAS] [GO:0005829 "cytosol" evidence=TAS]
[GO:0006366 "transcription from RNA polymerase II promoter"
evidence=TAS] [GO:0006368 "transcription elongation from RNA
polymerase II promoter" evidence=TAS] [GO:0006369 "termination of
RNA polymerase II transcription" evidence=TAS] [GO:0006397 "mRNA
processing" evidence=TAS] [GO:0006406 "mRNA export from nucleus"
evidence=TAS] [GO:0008334 "histone mRNA metabolic process"
evidence=TAS] [GO:0010467 "gene expression" evidence=TAS]
[GO:0016032 "viral reproduction" evidence=TAS] [GO:0016070 "RNA
metabolic process" evidence=TAS] [GO:0016071 "mRNA metabolic
process" evidence=TAS] [GO:0031124 "mRNA 3'-end processing"
evidence=TAS] [GO:0034660 "ncRNA metabolic process" evidence=TAS]
[GO:0050434 "positive regulation of viral transcription"
evidence=TAS] [GO:0005730 "nucleolus" evidence=IDA]
Reactome:REACT_71 Reactome:REACT_21257 InterPro:IPR000504
InterPro:IPR012677 InterPro:IPR027157 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005829 Reactome:REACT_116125 GO:GO:0005654
GO:GO:0016032 GO:GO:0000184 GO:GO:0000166 GO:GO:0006446
Reactome:REACT_1675 Gene3D:3.30.70.330 GO:GO:0006368 GO:GO:0006406
GO:GO:0031047 GO:GO:0005845 GO:GO:0000340 GO:GO:0000387
GO:GO:0034660 EMBL:CH471191 Reactome:REACT_1788 eggNOG:COG0724
GO:GO:0006370 GO:GO:0050434 GO:GO:0045292 GO:GO:0006369
GO:GO:0031124 Reactome:REACT_78 PDB:3FEX PDB:3FEY PDBsum:3FEX
PDBsum:3FEY GO:GO:0008334 HOGENOM:HOG000217589 HOVERGEN:HBG052581
PANTHER:PTHR18847 PDB:1H2T PDB:1H2U PDB:1H2V PDB:1H6K PDB:1N52
PDB:1N54 PDBsum:1H2T PDBsum:1H2U PDBsum:1H2V PDBsum:1H6K
PDBsum:1N52 PDBsum:1N54 KO:K12883 CTD:22916 OMA:RQDYDPA
GO:GO:0046833 GO:GO:0006408 EMBL:X84157 EMBL:D59253 EMBL:AK297506
EMBL:AK315903 EMBL:AK316601 EMBL:AY644767 EMBL:BT006842
EMBL:BC001255 IPI:IPI00183500 IPI:IPI00927860 PIR:I37222 PIR:S60109
RefSeq:NP_001036005.1 RefSeq:NP_031388.2 UniGene:Hs.591671
DisProt:DP00393 ProteinModelPortal:P52298 SMR:P52298 DIP:DIP-33246N
IntAct:P52298 MINT:MINT-248711 STRING:P52298 PhosphoSite:P52298
DMDM:1705651 PaxDb:P52298 PRIDE:P52298 DNASU:22916
Ensembl:ENST00000321256 Ensembl:ENST00000452404 GeneID:22916
KEGG:hsa:22916 UCSC:uc003fxb.1 UCSC:uc011btz.1
GeneCards:GC03M196662 HGNC:HGNC:7659 HPA:HPA044850 MIM:605133
neXtProt:NX_P52298 PharmGKB:PA31462 InParanoid:P52298
PhylomeDB:P52298 ChiTaRS:NCBP2 EvolutionaryTrace:P52298
GenomeRNAi:22916 NextBio:43603 ArrayExpress:P52298 Bgee:P52298
CleanEx:HS_NCBP2 Genevestigator:P52298 GermOnline:ENSG00000114503
Uniprot:P52298
Length = 156
Score = 98 (39.6 bits), Expect = 0.00048, P = 0.00048
Identities = 23/79 (29%), Positives = 43/79 (54%)
Query: 17 IESGTKLYISNLEYGVSNEDIKELFSEVGELKRCSVHFDRSGRSK-GTAEVVLTRRADAI 75
++ LY+ NL + + E I ELFS+ G++K+ + D+ ++ G V RADA
Sbjct: 36 LKKSCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAE 95
Query: 76 AAVKRYNNVQLDGKPMKIE 94
A++ N +LD + ++ +
Sbjct: 96 NAMRYINGTRLDDRIIRTD 114
>UNIPROTKB|F2Z5Q9 [details] [associations]
symbol:NCBP2 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0045292 "mRNA cis splicing, via spliceosome"
evidence=IEA] [GO:0005846 "nuclear cap binding complex"
evidence=IEA] [GO:0000339 "RNA cap binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 InterPro:IPR027157 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
PANTHER:PTHR18847 KO:K12883 CTD:22916 GeneTree:ENSGT00390000003197
OMA:RQDYDPA EMBL:CU862047 RefSeq:XP_003358812.2 UniGene:Ssc.56609
ProteinModelPortal:F2Z5Q9 SMR:F2Z5Q9 PRIDE:F2Z5Q9
Ensembl:ENSSSCT00000024784 GeneID:100156513 KEGG:ssc:100156513
Uniprot:F2Z5Q9
Length = 156
Score = 98 (39.6 bits), Expect = 0.00048, P = 0.00048
Identities = 23/79 (29%), Positives = 43/79 (54%)
Query: 17 IESGTKLYISNLEYGVSNEDIKELFSEVGELKRCSVHFDRSGRSK-GTAEVVLTRRADAI 75
++ LY+ NL + + E I ELFS+ G++K+ + D+ ++ G V RADA
Sbjct: 36 LKKSCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAE 95
Query: 76 AAVKRYNNVQLDGKPMKIE 94
A++ N +LD + ++ +
Sbjct: 96 NAMRYINGTRLDDRIIRTD 114
>MGI|MGI:1915342 [details] [associations]
symbol:Ncbp2 "nuclear cap binding protein subunit 2"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000184 "nuclear-transcribed mRNA catabolic
process, nonsense-mediated decay" evidence=ISO] [GO:0000340 "RNA
7-methylguanosine cap binding" evidence=ISO] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=ISO] [GO:0005654 "nucleoplasm"
evidence=ISO] [GO:0005737 "cytoplasm" evidence=ISO] [GO:0005845
"mRNA cap binding complex" evidence=ISO] [GO:0006370
"7-methylguanosine mRNA capping" evidence=ISO] [GO:0006397 "mRNA
processing" evidence=IEA] [GO:0006417 "regulation of translation"
evidence=IEA] [GO:0006446 "regulation of translational initiation"
evidence=ISO] [GO:0006810 "transport" evidence=IEA] [GO:0008380
"RNA splicing" evidence=IEA] [GO:0031047 "gene silencing by RNA"
evidence=IEA] [GO:0045292 "mRNA cis splicing, via spliceosome"
evidence=ISO] [GO:0051028 "mRNA transport" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 InterPro:IPR027157
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 MGI:MGI:1915342
GO:GO:0005737 GO:GO:0005654 GO:GO:0000184 GO:GO:0000166
GO:GO:0006446 Gene3D:3.30.70.330 EMBL:CH466521 GO:GO:0031047
GO:GO:0005845 GO:GO:0000340 GO:GO:0051028 eggNOG:COG0724
GO:GO:0006370 GO:GO:0045292 HOGENOM:HOG000217589 HOVERGEN:HBG052581
OrthoDB:EOG470TJG PANTHER:PTHR18847 KO:K12883 CTD:22916
GeneTree:ENSGT00390000003197 OMA:RQDYDPA GO:GO:0046833
GO:GO:0006408 EMBL:AK008980 EMBL:AK012659 EMBL:AK077841
EMBL:AK147027 EMBL:BC118926 IPI:IPI00132019 RefSeq:NP_080830.1
UniGene:Mm.290027 ProteinModelPortal:Q9CQ49 SMR:Q9CQ49
STRING:Q9CQ49 PhosphoSite:Q9CQ49 PaxDb:Q9CQ49 PRIDE:Q9CQ49
Ensembl:ENSMUST00000023460 GeneID:68092 KEGG:mmu:68092
UCSC:uc007yxz.2 InParanoid:Q0VF93 NextBio:326400 Bgee:Q9CQ49
CleanEx:MM_NCBP2 Genevestigator:Q9CQ49
GermOnline:ENSMUSG00000022774 Uniprot:Q9CQ49
Length = 156
Score = 98 (39.6 bits), Expect = 0.00048, P = 0.00048
Identities = 23/79 (29%), Positives = 43/79 (54%)
Query: 17 IESGTKLYISNLEYGVSNEDIKELFSEVGELKRCSVHFDRSGRSK-GTAEVVLTRRADAI 75
++ LY+ NL + + E I ELFS+ G++K+ + D+ ++ G V RADA
Sbjct: 36 LKKSCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAE 95
Query: 76 AAVKRYNNVQLDGKPMKIE 94
A++ N +LD + ++ +
Sbjct: 96 NAMRYINGTRLDDRIIRTD 114
>RGD|1596188 [details] [associations]
symbol:Ncbp2 "nuclear cap binding protein subunit 2"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000184 "nuclear-transcribed mRNA catabolic
process, nonsense-mediated decay" evidence=IEA;ISO] [GO:0000340
"RNA 7-methylguanosine cap binding" evidence=ISO;ISS] [GO:0005634
"nucleus" evidence=IEA;ISO] [GO:0005654 "nucleoplasm" evidence=ISO]
[GO:0005737 "cytoplasm" evidence=IEA;ISO] [GO:0005845 "mRNA cap
binding complex" evidence=ISO] [GO:0005846 "nuclear cap binding
complex" evidence=IEA] [GO:0006370 "7-methylguanosine mRNA capping"
evidence=IEA;ISO] [GO:0006408 "snRNA export from nucleus"
evidence=ISS] [GO:0006417 "regulation of translation" evidence=IEA]
[GO:0006446 "regulation of translational initiation" evidence=ISO]
[GO:0008380 "RNA splicing" evidence=ISS] [GO:0031047 "gene
silencing by RNA" evidence=IEA] [GO:0045292 "mRNA cis splicing, via
spliceosome" evidence=ISO;ISS] [GO:0046833 "positive regulation of
RNA export from nucleus" evidence=ISS] [GO:0051028 "mRNA transport"
evidence=IEA] [GO:0003723 "RNA binding" evidence=ISO] [GO:0005730
"nucleolus" evidence=ISO] InterPro:IPR000504 InterPro:IPR012677
InterPro:IPR027157 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:1596188 GO:GO:0005737 GO:GO:0005654 GO:GO:0000184 GO:GO:0000166
GO:GO:0006446 Gene3D:3.30.70.330 GO:GO:0031047 GO:GO:0005845
GO:GO:0000340 GO:GO:0051028 eggNOG:COG0724 GO:GO:0006370
GO:GO:0045292 HOGENOM:HOG000217589 OrthoDB:EOG470TJG
PANTHER:PTHR18847 KO:K12883 GeneTree:ENSGT00390000003197
OMA:RQDYDPA GO:GO:0046833 GO:GO:0006408 EMBL:BC161994
IPI:IPI00192753 RefSeq:NP_001102995.1 RefSeq:XP_003751123.1
UniGene:Rn.204538 ProteinModelPortal:B1WC40 SMR:B1WC40
STRING:B1WC40 PhosphoSite:B1WC40 PRIDE:B1WC40
Ensembl:ENSRNOT00000002381 GeneID:100911481 GeneID:689116
KEGG:rno:100911481 KEGG:rno:689116 UCSC:RGD:1596188 CTD:80235
NextBio:737969 Genevestigator:B1WC40 Uniprot:B1WC40
Length = 156
Score = 98 (39.6 bits), Expect = 0.00048, P = 0.00048
Identities = 23/79 (29%), Positives = 43/79 (54%)
Query: 17 IESGTKLYISNLEYGVSNEDIKELFSEVGELKRCSVHFDRSGRSK-GTAEVVLTRRADAI 75
++ LY+ NL + + E I ELFS+ G++K+ + D+ ++ G V RADA
Sbjct: 36 LKKSCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAE 95
Query: 76 AAVKRYNNVQLDGKPMKIE 94
A++ N +LD + ++ +
Sbjct: 96 NAMRYINGTRLDDRIIRTD 114
>UNIPROTKB|G3MYJ0 [details] [associations]
symbol:G3MYJ0 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00550000074656 EMBL:DAAA02029625
Ensembl:ENSBTAT00000064073 Uniprot:G3MYJ0
Length = 625
Score = 107 (42.7 bits), Expect = 0.00049, P = 0.00049
Identities = 28/91 (30%), Positives = 49/91 (53%)
Query: 18 ESGTKLYISNLEYGVSNEDIKELFSEVGELKRCSVHFDRSGRSKGTAEVVLTRRADAIAA 77
ES T L +SNL Y + E ++E+F + +K V +++G+SKG A + DA A
Sbjct: 399 ESKT-LVLSNLSYSATEETLQEVFEKATHIK---VPQNQNGKSKGYAFIEFASFEDAKEA 454
Query: 78 VKRYNNVQLDGKPMKIEIIGTNIGPPAAVLP 108
+ N +++G+ +++E+ G P A P
Sbjct: 455 LNSCNKREIEGRAIRLELQGPRGSPNARSQP 485
>UNIPROTKB|E1C903 [details] [associations]
symbol:PABPC4 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0008143 "poly(A) RNA
binding" evidence=IEA] [GO:0008266 "poly(U) RNA binding"
evidence=IEA] [GO:0010494 "cytoplasmic stress granule"
evidence=IEA] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
GeneTree:ENSGT00640000091232 CTD:8761 OMA:XVVCDEN EMBL:AADN02043739
EMBL:AADN02043740 IPI:IPI00587440 RefSeq:XP_417821.2
UniGene:Gga.11375 ProteinModelPortal:E1C903 PRIDE:E1C903
Ensembl:ENSGALT00000006028 GeneID:419674 KEGG:gga:419674
NextBio:20822696 Uniprot:E1C903
Length = 630
Score = 107 (42.7 bits), Expect = 0.00049, P = 0.00049
Identities = 25/69 (36%), Positives = 37/69 (53%)
Query: 21 TKLYISNLEYGVSNEDIKELFSEVGELKRCSVHFDRSGRSKGTAEVVLTRRADAIAAVKR 80
T +YI N + +E +KELFS+ G+ V D +G+SKG V + DA AV+
Sbjct: 191 TNVYIKNFGDDMDDERLKELFSKYGKTLSVKVMTDPTGKSKGFGFVSFEKHEDANKAVEE 250
Query: 81 YNNVQLDGK 89
N ++GK
Sbjct: 251 MNGKDINGK 259
>UNIPROTKB|G3MXT4 [details] [associations]
symbol:G3MXT4 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00550000074656 EMBL:DAAA02029625
Ensembl:ENSBTAT00000065413 Uniprot:G3MXT4
Length = 630
Score = 107 (42.7 bits), Expect = 0.00049, P = 0.00049
Identities = 28/91 (30%), Positives = 49/91 (53%)
Query: 18 ESGTKLYISNLEYGVSNEDIKELFSEVGELKRCSVHFDRSGRSKGTAEVVLTRRADAIAA 77
ES T L +SNL Y + E ++E+F + +K V +++G+SKG A + DA A
Sbjct: 404 ESKT-LVLSNLSYSATEETLQEVFEKATHIK---VPQNQNGKSKGYAFIEFASFEDAKEA 459
Query: 78 VKRYNNVQLDGKPMKIEIIGTNIGPPAAVLP 108
+ N +++G+ +++E+ G P A P
Sbjct: 460 LNSCNKREIEGRAIRLELQGPRGSPNARSQP 490
>UNIPROTKB|G3X7M4 [details] [associations]
symbol:G3X7M4 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00550000074656 EMBL:DAAA02029625
Ensembl:ENSBTAT00000038502 OMA:ENAMEIR Uniprot:G3X7M4
Length = 630
Score = 107 (42.7 bits), Expect = 0.00049, P = 0.00049
Identities = 28/91 (30%), Positives = 49/91 (53%)
Query: 18 ESGTKLYISNLEYGVSNEDIKELFSEVGELKRCSVHFDRSGRSKGTAEVVLTRRADAIAA 77
ES T L +SNL Y + E ++E+F + +K V +++G+SKG A + DA A
Sbjct: 404 ESKT-LVLSNLSYSATEETLQEVFEKATHIK---VPQNQNGKSKGYAFIEFASFEDAKEA 459
Query: 78 VKRYNNVQLDGKPMKIEIIGTNIGPPAAVLP 108
+ N +++G+ +++E+ G P A P
Sbjct: 460 LNSCNKREIEGRAIRLELQGPRGSPNARSQP 490
>UNIPROTKB|H7BY16 [details] [associations]
symbol:NCL "Nucleolin" species:9606 "Homo sapiens"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC017104 HGNC:HGNC:7667
ChiTaRS:NCL ProteinModelPortal:H7BY16 PRIDE:H7BY16
Ensembl:ENST00000356936 Bgee:H7BY16 Uniprot:H7BY16
Length = 297
Score = 104 (41.7 bits), Expect = 0.00049, P = 0.00049
Identities = 28/91 (30%), Positives = 49/91 (53%)
Query: 18 ESGTKLYISNLEYGVSNEDIKELFSEVGELKRCSVHFDRSGRSKGTAEVVLTRRADAIAA 77
ES T L +SNL Y + E ++E+F + +K V +++G+SKG A + DA A
Sbjct: 109 ESKT-LVLSNLSYSATEETLQEVFEKATFIK---VPQNQNGKSKGYAFIEFASFEDAKEA 164
Query: 78 VKRYNNVQLDGKPMKIEIIGTNIGPPAAVLP 108
+ N +++G+ +++E+ G P A P
Sbjct: 165 LNSCNKREIEGRAIRLELQGPRGSPNARSQP 195
>UNIPROTKB|Q3AF33 [details] [associations]
symbol:CHY_0389 "RNA-binding protein" species:246194
"Carboxydothermus hydrogenoformans Z-2901" [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 EMBL:CP000141 GenomeReviews:CP000141_GR
Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724
HOGENOM:HOG000276232 OMA:KRVHIPT RefSeq:YP_359251.1
ProteinModelPortal:Q3AF33 STRING:Q3AF33 GeneID:3728526
KEGG:chy:CHY_0389 PATRIC:21273941
BioCyc:CHYD246194:GJCN-390-MONOMER Uniprot:Q3AF33
Length = 83
Score = 87 (35.7 bits), Expect = 0.00051, P = 0.00051
Identities = 23/75 (30%), Positives = 43/75 (57%)
Query: 21 TK-LYISNLEYGVSNEDIKELFSEVGELKRCSVHFDRS-GRSKGTAEVVLTRRADAIAAV 78
TK LY+ NL + + +E ++E+ SE GE+ V ++S GRS+G + + R DA +
Sbjct: 2 TKTLYVGNLPWKIRSEQLQEIASEFGEVIGARVILEKSTGRSRGYGFIEV-RDEDAEKFM 60
Query: 79 KRYNNVQLDGKPMKI 93
N +++G+ + +
Sbjct: 61 TGLNGKEVEGRQLVV 75
>UNIPROTKB|Q47X92 [details] [associations]
symbol:CPS_3920 "RNA-binding protein" species:167879
"Colwellia psychrerythraea 34H" [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:CP000083 GenomeReviews:CP000083_GR
HOGENOM:HOG000276232 RefSeq:YP_270578.1 ProteinModelPortal:Q47X92
STRING:Q47X92 GeneID:3522867 KEGG:cps:CPS_3920 PATRIC:21470731
eggNOG:NOG258387 OMA:HELEGRQ ProtClustDB:CLSK913470
BioCyc:CPSY167879:GI48-3933-MONOMER Uniprot:Q47X92
Length = 78
Score = 87 (35.7 bits), Expect = 0.00051, P = 0.00051
Identities = 20/75 (26%), Positives = 41/75 (54%)
Query: 22 KLYISNLEYGVSNEDIKELFSEVGELKRCSVHFDRS-GRSKGTAEVVLTRRADAIAAVKR 80
KL + NL + ++++ LFS G + CS+ D++ +SKG A V + A+A A+
Sbjct: 2 KLLVRNLSRSTTEQELRILFSAHGTVAECSLVLDQATAKSKGFAFVEMPNEAEAKVALSS 61
Query: 81 YNNVQLDGKPMKIEI 95
+ ++ ++++I
Sbjct: 62 LHETRVAKNKIRVKI 76
>TIGR_CMR|CHY_0389 [details] [associations]
symbol:CHY_0389 "RNA-binding protein" species:246194
"Carboxydothermus hydrogenoformans Z-2901" [GO:0003723 "RNA
binding" evidence=ISS] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 EMBL:CP000141
GenomeReviews:CP000141_GR Gene3D:3.30.70.330 GO:GO:0003676
eggNOG:COG0724 HOGENOM:HOG000276232 OMA:KRVHIPT RefSeq:YP_359251.1
ProteinModelPortal:Q3AF33 STRING:Q3AF33 GeneID:3728526
KEGG:chy:CHY_0389 PATRIC:21273941
BioCyc:CHYD246194:GJCN-390-MONOMER Uniprot:Q3AF33
Length = 83
Score = 87 (35.7 bits), Expect = 0.00051, P = 0.00051
Identities = 23/75 (30%), Positives = 43/75 (57%)
Query: 21 TK-LYISNLEYGVSNEDIKELFSEVGELKRCSVHFDRS-GRSKGTAEVVLTRRADAIAAV 78
TK LY+ NL + + +E ++E+ SE GE+ V ++S GRS+G + + R DA +
Sbjct: 2 TKTLYVGNLPWKIRSEQLQEIASEFGEVIGARVILEKSTGRSRGYGFIEV-RDEDAEKFM 60
Query: 79 KRYNNVQLDGKPMKI 93
N +++G+ + +
Sbjct: 61 TGLNGKEVEGRQLVV 75
>TIGR_CMR|CPS_3920 [details] [associations]
symbol:CPS_3920 "RNA-binding protein" species:167879
"Colwellia psychrerythraea 34H" [GO:0003723 "RNA binding"
evidence=ISS] [GO:0008150 "biological_process" evidence=ND]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:CP000083 GenomeReviews:CP000083_GR HOGENOM:HOG000276232
RefSeq:YP_270578.1 ProteinModelPortal:Q47X92 STRING:Q47X92
GeneID:3522867 KEGG:cps:CPS_3920 PATRIC:21470731 eggNOG:NOG258387
OMA:HELEGRQ ProtClustDB:CLSK913470
BioCyc:CPSY167879:GI48-3933-MONOMER Uniprot:Q47X92
Length = 78
Score = 87 (35.7 bits), Expect = 0.00051, P = 0.00051
Identities = 20/75 (26%), Positives = 41/75 (54%)
Query: 22 KLYISNLEYGVSNEDIKELFSEVGELKRCSVHFDRS-GRSKGTAEVVLTRRADAIAAVKR 80
KL + NL + ++++ LFS G + CS+ D++ +SKG A V + A+A A+
Sbjct: 2 KLLVRNLSRSTTEQELRILFSAHGTVAECSLVLDQATAKSKGFAFVEMPNEAEAKVALSS 61
Query: 81 YNNVQLDGKPMKIEI 95
+ ++ ++++I
Sbjct: 62 LHETRVAKNKIRVKI 76
>TAIR|locus:2202740 [details] [associations]
symbol:AT1G60000 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005739 "mitochondrion" evidence=ISM] [GO:0008150
"biological_process" evidence=ND] [GO:0009507 "chloroplast"
evidence=ISM] [GO:0019344 "cysteine biosynthetic process"
evidence=RCA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:AC005966 HOGENOM:HOG000276232 HSSP:P33240
EMBL:AF348590 EMBL:AY088142 EMBL:AK316953 IPI:IPI00532959
PIR:C96624 RefSeq:NP_176208.1 UniGene:At.17057
ProteinModelPortal:Q9ZUJ3 SMR:Q9ZUJ3 STRING:Q9ZUJ3 PRIDE:Q9ZUJ3
EnsemblPlants:AT1G60000.1 GeneID:842294 KEGG:ath:AT1G60000
TAIR:At1g60000 InParanoid:Q9ZUJ3 OMA:NVEDCNI PhylomeDB:Q9ZUJ3
ProtClustDB:CLSN2913540 ArrayExpress:Q9ZUJ3 Genevestigator:Q9ZUJ3
Uniprot:Q9ZUJ3
Length = 258
Score = 103 (41.3 bits), Expect = 0.00051, P = 0.00051
Identities = 22/79 (27%), Positives = 46/79 (58%)
Query: 18 ESGTKLYISNLEYGVSNEDIKELFSEVGELKRCSVHFDR-SGRSKGTAEVVLTRRADAIA 76
E+ KL++ NL + V++E + F E G++ V FD +GRS+G V + +A+
Sbjct: 174 ETEHKLFVGNLSWTVTSESLAGAFRECGDVVGARVVFDGDTGRSRGYGFVCYSSKAEMET 233
Query: 77 AVKRYNNVQLDGKPMKIEI 95
A++ + +L+G+ +++ +
Sbjct: 234 ALESLDGFELEGRAIRVNL 252
>DICTYBASE|DDB_G0293924 [details] [associations]
symbol:DDB_G0293924 "RNA-binding protein 7"
species:44689 "Dictyostelium discoideum" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 dictyBase:DDB_G0293924 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AAFI02000224
RefSeq:XP_628876.1 ProteinModelPortal:Q54B40
EnsemblProtists:DDB0192199 GeneID:8629492 KEGG:ddi:DDB_G0293924
eggNOG:NOG247261 InParanoid:Q54B40 OMA:LERCEIP Uniprot:Q54B40
Length = 886
Score = 108 (43.1 bits), Expect = 0.00053, P = 0.00053
Identities = 21/78 (26%), Positives = 44/78 (56%)
Query: 19 SGTKLYISNLEYGVSNEDIKELFSEVGELKRCSVHFDRSGRSKGTAEVVLTRRADAIAAV 78
+ + +Y+SN+ + I +FS+ G L+RC + ++ G+++G A + +A+A A
Sbjct: 14 TSSTIYVSNIRHSTPINSIFNIFSKFGPLERCEIPENKFGKTRGFAFIEFENKANAYTAF 73
Query: 79 KRY--NNVQLDGKPMKIE 94
+ + LDG+ +K+E
Sbjct: 74 EELAKQEILLDGRVLKLE 91
>TAIR|locus:2159401 [details] [associations]
symbol:GR-RBP3 "glycine-rich RNA-binding protein 3"
species:3702 "Arabidopsis thaliana" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS] [GO:0005739
"mitochondrion" evidence=IDA] [GO:0009409 "response to cold"
evidence=IEP] [GO:0005524 "ATP binding" evidence=IDA] [GO:0005507
"copper ion binding" evidence=IDA] [GO:0006626 "protein targeting
to mitochondrion" evidence=RCA] [GO:0009220 "pyrimidine
ribonucleotide biosynthetic process" evidence=RCA] [GO:0009909
"regulation of flower development" evidence=RCA] [GO:0010228
"vegetative to reproductive phase transition of meristem"
evidence=RCA] [GO:0034968 "histone lysine methylation"
evidence=RCA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005739 GO:GO:0005524
EMBL:CP002688 GenomeReviews:BA000015_GR Gene3D:3.30.70.330
GO:GO:0003676 GO:GO:0005507 EMBL:AB006696 eggNOG:COG0724
HSSP:Q14103 KO:K12741 EMBL:AY060565 EMBL:AY125548 EMBL:AB493804
IPI:IPI00542729 RefSeq:NP_200911.1 UniGene:At.24064
ProteinModelPortal:Q9FNR1 SMR:Q9FNR1 STRING:Q9FNR1 PaxDb:Q9FNR1
PRIDE:Q9FNR1 EnsemblPlants:AT5G61030.1 GeneID:836224
KEGG:ath:AT5G61030 GeneFarm:3953 TAIR:At5g61030
HOGENOM:HOG000029199 InParanoid:Q9FNR1 OMA:YANDRTS
ProtClustDB:CLSN2916423 Genevestigator:Q9FNR1 Uniprot:Q9FNR1
Length = 309
Score = 104 (41.7 bits), Expect = 0.00053, P = 0.00053
Identities = 23/76 (30%), Positives = 42/76 (55%)
Query: 19 SGTKLYISNLEYGVSNEDIKELFSEVGELKRCSVHFDR-SGRSKGTAEVVLTRRADAIAA 77
S +KL+I + Y + + ++E F++ GE+ V DR +GRS+G V T A +A
Sbjct: 38 SSSKLFIGGMAYSMDEDSLREAFTKYGEVVDTRVILDRETGRSRGFGFVTFTSSEAASSA 97
Query: 78 VKRYNNVQLDGKPMKI 93
++ + L G+ +K+
Sbjct: 98 IQALDGRDLHGRVVKV 113
>RGD|1309950 [details] [associations]
symbol:Hnrpdl "heterogeneous nuclear ribonucleoprotein D-like"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:1309950 GO:GO:0005634 GO:GO:0005737 GO:GO:0006355 GO:GO:0000166
GO:GO:0003677 Gene3D:3.30.70.330 GO:GO:0006351 GO:GO:0003723
eggNOG:COG0724 HOVERGEN:HBG002295 HSSP:Q14103 CTD:9987 KO:K13044
EMBL:BC104683 IPI:IPI00363719 RefSeq:NP_001028868.1
UniGene:Rn.102146 ProteinModelPortal:Q3SWU3 SMR:Q3SWU3
PhosphoSite:Q3SWU3 PRIDE:Q3SWU3 GeneID:305178 KEGG:rno:305178
NextBio:654187 Genevestigator:Q3SWU3 Uniprot:Q3SWU3
Length = 322
Score = 104 (41.7 bits), Expect = 0.00057, P = 0.00057
Identities = 27/77 (35%), Positives = 41/77 (53%)
Query: 14 SSSIESGTKLYISNLEYGVSNEDIKELFSEVGELKRCSVHFDR-SGRSKGTAEVVLTRRA 72
SS SG K++I L + S +D+ E S GE+ C++ D +GRS+G VL + A
Sbjct: 44 SSFPTSGNKMFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKTDPVTGRSRGFG-FVLFKDA 102
Query: 73 DAIAAVKRYNNVQLDGK 89
++ V +LDGK
Sbjct: 103 ASVDKVLELKEHKLDGK 119
>UNIPROTKB|Q3SWU3 [details] [associations]
symbol:Hnrpdl "Heterogeneous nuclear ribonucleoprotein
D-like" species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 RGD:1309950
GO:GO:0005634 GO:GO:0005737 GO:GO:0006355 GO:GO:0000166
GO:GO:0003677 Gene3D:3.30.70.330 GO:GO:0006351 GO:GO:0003723
eggNOG:COG0724 HOVERGEN:HBG002295 HSSP:Q14103 CTD:9987 KO:K13044
EMBL:BC104683 IPI:IPI00363719 RefSeq:NP_001028868.1
UniGene:Rn.102146 ProteinModelPortal:Q3SWU3 SMR:Q3SWU3
PhosphoSite:Q3SWU3 PRIDE:Q3SWU3 GeneID:305178 KEGG:rno:305178
NextBio:654187 Genevestigator:Q3SWU3 Uniprot:Q3SWU3
Length = 322
Score = 104 (41.7 bits), Expect = 0.00057, P = 0.00057
Identities = 27/77 (35%), Positives = 41/77 (53%)
Query: 14 SSSIESGTKLYISNLEYGVSNEDIKELFSEVGELKRCSVHFDR-SGRSKGTAEVVLTRRA 72
SS SG K++I L + S +D+ E S GE+ C++ D +GRS+G VL + A
Sbjct: 44 SSFPTSGNKMFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKTDPVTGRSRGFG-FVLFKDA 102
Query: 73 DAIAAVKRYNNVQLDGK 89
++ V +LDGK
Sbjct: 103 ASVDKVLELKEHKLDGK 119
>UNIPROTKB|P08199 [details] [associations]
symbol:NCL "Nucleolin" species:10036 "Mesocricetus auratus"
[GO:0003723 "RNA binding" evidence=ISS] [GO:0030529
"ribonucleoprotein complex" evidence=ISS] [GO:0042162 "telomeric
DNA binding" evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005737
GO:GO:0005730 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
GO:GO:0030529 GO:GO:0042162 HOVERGEN:HBG002295 EMBL:M15825
PIR:A27441 PDB:1FJ7 PDB:1FJC PDB:1FJE PDB:1RKJ PDBsum:1FJ7
PDBsum:1FJC PDBsum:1FJE PDBsum:1RKJ ProteinModelPortal:P08199
SMR:P08199 PRIDE:P08199 EvolutionaryTrace:P08199 Uniprot:P08199
Length = 714
Score = 107 (42.7 bits), Expect = 0.00058, P = 0.00058
Identities = 28/91 (30%), Positives = 49/91 (53%)
Query: 18 ESGTKLYISNLEYGVSNEDIKELFSEVGELKRCSVHFDRSGRSKGTAEVVLTRRADAIAA 77
ES T L +SNL Y + E ++E+F + +K V ++ G+SKG A + DA A
Sbjct: 484 ESKT-LVLSNLSYSATEETLQEVFEKATFIK---VPQNQQGKSKGYAFIEFASFEDAKEA 539
Query: 78 VKRYNNVQLDGKPMKIEIIGTNIGPPAAVLP 108
+ N ++++G+ +++E+ G P A P
Sbjct: 540 LNSCNKMEIEGRTIRLELQGPRGSPNARSQP 570
>UNIPROTKB|E1B8K6 [details] [associations]
symbol:NCL "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 KO:K11294
GeneTree:ENSGT00550000074656 CTD:4691 EMBL:DAAA02006195
IPI:IPI00971535 RefSeq:NP_001193589.1 UniGene:Bt.107977
UniGene:Bt.108558 UniGene:Bt.7403 UniGene:Bt.79166
ProteinModelPortal:E1B8K6 IntAct:E1B8K6 PRIDE:E1B8K6
Ensembl:ENSBTAT00000021529 GeneID:497013 KEGG:bta:497013
OMA:RLEYSQS NextBio:20865826 Uniprot:E1B8K6
Length = 720
Score = 107 (42.7 bits), Expect = 0.00058, P = 0.00058
Identities = 28/91 (30%), Positives = 49/91 (53%)
Query: 18 ESGTKLYISNLEYGVSNEDIKELFSEVGELKRCSVHFDRSGRSKGTAEVVLTRRADAIAA 77
ES T L +SNL Y + E ++E+F + +K V +++G+SKG A + DA A
Sbjct: 494 ESKT-LVLSNLSYSATEETLQEVFEKATHIK---VPQNQNGKSKGYAFIEFASFEDAKEA 549
Query: 78 VKRYNNVQLDGKPMKIEIIGTNIGPPAAVLP 108
+ N +++G+ +++E+ G P A P
Sbjct: 550 LNSCNKREIEGRAIRLELQGPRGSPNARSQP 580
>UNIPROTKB|Q9XSY6 [details] [associations]
symbol:Q9XSY6 "HnRNP A/B related protein" species:9685
"Felis catus" [GO:0001837 "epithelial to mesenchymal transition"
evidence=ISS] [GO:0005634 "nucleus" evidence=ISS] [GO:0005737
"cytoplasm" evidence=ISS] [GO:0045893 "positive regulation of
transcription, DNA-dependent" evidence=ISS] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=ISS] [GO:0043565 "sequence-specific DNA binding"
evidence=ISS] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0005737
GO:GO:0045893 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GO:GO:0001837 HOVERGEN:HBG002295 HSSP:Q14103 InterPro:IPR012956
Pfam:PF08143 EMBL:AF153444 ProteinModelPortal:Q9XSY6 Uniprot:Q9XSY6
Length = 279
Score = 103 (41.3 bits), Expect = 0.00060, P = 0.00060
Identities = 24/87 (27%), Positives = 44/87 (50%)
Query: 4 NGXXXXXXXRSSSIESGTKLYISNLEYGVSNEDIKELFSEVGELKRCSVHF-DRSGRSKG 62
NG S + E K+++ L + S +D+K+ F++ GE+ C++ +GRSKG
Sbjct: 47 NGAEGDQINASKNEEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMVPNTGRSKG 106
Query: 63 TAEVVLTRRADAIAAVKRYNNVQLDGK 89
+L + A ++ V +LDG+
Sbjct: 107 FG-FILFKDAASVEKVLDQKEHRLDGR 132
>POMBASE|SPBC106.12c [details] [associations]
symbol:SPBC106.12c "THO complex subunit (predicted)"
species:4896 "Schizosaccharomyces pombe" [GO:0000184
"nuclear-transcribed mRNA catabolic process, nonsense-mediated
decay" evidence=ISS] [GO:0000347 "THO complex" evidence=ISS]
[GO:0003723 "RNA binding" evidence=ISM] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005730 "nucleolus" evidence=IDA] [GO:0006397
"mRNA processing" evidence=ISS] [GO:0006406 "mRNA export from
nucleus" evidence=ISS] [GO:0034243 "regulation of transcription
elongation from RNA polymerase II promoter" evidence=ISS]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 PomBase:SPBC106.12c GO:GO:0005730 GO:GO:0000184
GO:GO:0000166 EMBL:CU329671 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0006406 GO:GO:0034243 GO:GO:0000347 KO:K12881
PIR:T39269 RefSeq:NP_595161.1 ProteinModelPortal:Q9URV0
EnsemblFungi:SPBC106.12c.1 GeneID:2540184 KEGG:spo:SPBC106.12c
eggNOG:NOG328157 OMA:NERTNGF OrthoDB:EOG4DV8WK NextBio:20801316
Uniprot:Q9URV0
Length = 274
Score = 95 (38.5 bits), Expect = 0.00061, Sum P(2) = 0.00061
Identities = 22/69 (31%), Positives = 36/69 (52%)
Query: 25 ISNLEYGVSNEDIKELFSEVGELKRCSVHFDRSGRSKGTAEVVLTRRADAIAAVKRYNNV 84
+ NL Y V +D+ LF + R +++DR+GRS+G+ +V DA A K +
Sbjct: 89 VENLHYQVLEKDVLSLFENFHPI-RVIMNYDRAGRSEGSCDVYFETSQDAEDAQKTLQST 147
Query: 85 QLDGKPMKI 93
L G ++I
Sbjct: 148 NLKGSEIQI 156
Score = 40 (19.1 bits), Expect = 0.00061, Sum P(2) = 0.00061
Identities = 7/14 (50%), Positives = 12/14 (85%)
Query: 167 NLSVEDLDADLEKY 180
++S EDLD +L++Y
Sbjct: 210 SISHEDLDKELDEY 223
>UNIPROTKB|E2R1C1 [details] [associations]
symbol:CSTF2T "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR025742
InterPro:IPR026896 Pfam:PF14327 Pfam:PF14304
GeneTree:ENSGT00550000074641 EMBL:AAEX03014924 EMBL:AAEX03014925
Ensembl:ENSCAFT00000024677 Uniprot:E2R1C1
Length = 435
Score = 105 (42.0 bits), Expect = 0.00063, P = 0.00063
Identities = 27/124 (21%), Positives = 61/124 (49%)
Query: 5 GXXXXXXXRSSSIESGTK-LYISNLEYGVSNEDIKELFSEVGELKRCSVHFDR-SGRSKG 62
G R +++ + +++ N+ Y + E +K++FSEVG + + +DR +G+ KG
Sbjct: 3 GAMSSLAVRDPAMDRSLRSVFVGNIPYEATEEQLKDIFSEVGSVVSFRLVYDRETGKPKG 62
Query: 63 TAEVVLTRRADAIAAVKRYNNVQLDGKPMKIEIIGT--------NIGPPAAVLPITNVMY 114
+ A++A++ N + G+ ++++ + ++GP A P+ + Y
Sbjct: 63 YGFCEYQDQETALSAMRNLNGREFSGRALRVDNAASEKNKEELKSLGPAA---PVVDSPY 119
Query: 115 GNEI 118
G+ I
Sbjct: 120 GDPI 123
>ASPGD|ASPL0000040642 [details] [associations]
symbol:AN2989 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0005622 "intracellular" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 EMBL:BN001306
GO:GO:0003676 HOGENOM:HOG000276232 OMA:ISEMDGK
ProteinModelPortal:C8VIY5 EnsemblFungi:CADANIAT00010091
Uniprot:C8VIY5
Length = 128
Score = 91 (37.1 bits), Expect = 0.00064, P = 0.00064
Identities = 22/74 (29%), Positives = 41/74 (55%)
Query: 22 KLYISNLEYGVSNEDIKELFSEVGELKRCSVHFDR-SGRSKGTAEVVLTRRADAIAAVKR 80
KL+I L + +++ ++E FS G ++ V DR + RS+G V +A AA+
Sbjct: 3 KLFIGGLAWHTTDDVLREGFSRYGTIEEAVVVKDRDTNRSRGFGFVRFASEPEADAAMGA 62
Query: 81 YNNVQLDGKPMKIE 94
NN + DG+ ++++
Sbjct: 63 MNNQEFDGRIIRVD 76
>UNIPROTKB|H0YEY9 [details] [associations]
symbol:RNPC3 "RNA-binding protein 40" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:BX322653
EMBL:AC095032 EMBL:AC105272 HGNC:HGNC:18666 ChiTaRS:RNPC3
Ensembl:ENST00000531127 Uniprot:H0YEY9
Length = 128
Score = 91 (37.1 bits), Expect = 0.00064, P = 0.00064
Identities = 25/83 (30%), Positives = 38/83 (45%)
Query: 18 ESGTKLYISNLEYGVSNEDIKELFSEV----GELKRC--SVHFDRSGRSKGTAEVVLTRR 71
E ++Y+ NL V +D+K +F E +R + + GR KG A + L
Sbjct: 28 EPNCRIYVKNLAKHVQEKDLKYIFGRYVDFSSETQRIMFDIRLMKEGRMKGQAFIGLPNE 87
Query: 72 ADAIAAVKRYNNVQLDGKPMKIE 94
A A+K N L GKPM ++
Sbjct: 88 KAAAKALKEANGYVLFGKPMVVQ 110
>UNIPROTKB|H0YEQ8 [details] [associations]
symbol:PABPC4 "Polyadenylate-binding protein 4"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AL365277 EMBL:AL845289 HGNC:HGNC:8557 ChiTaRS:PABPC4
Ensembl:ENST00000470443 Uniprot:H0YEQ8
Length = 112
Score = 86 (35.3 bits), Expect = 0.00066, P = 0.00066
Identities = 24/79 (30%), Positives = 42/79 (53%)
Query: 13 RSSSI-ESGT-KLYISNLEYGVSNEDIKELFSEVGELKRCSVHFDRSGRSKGTAEVVLTR 70
R S+ +SG ++I NL+ + N+ + + FS G + C V D +G SKG A V
Sbjct: 33 RDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYAFVHFET 91
Query: 71 RADAIAAVKRYNNVQLDGK 89
+ A A+++ N + L+ +
Sbjct: 92 QEAADKAIEKMNGMLLNDR 110
>UNIPROTKB|Q28IQ9 [details] [associations]
symbol:cirbp "Cold-inducible RNA-binding protein"
species:8364 "Xenopus (Silurana) tropicalis" [GO:0003729 "mRNA
binding" evidence=ISS] [GO:0003730 "mRNA 3'-UTR binding"
evidence=ISS] [GO:0005634 "nucleus" evidence=ISS] [GO:0005737
"cytoplasm" evidence=ISS] [GO:0007369 "gastrulation" evidence=ISS]
[GO:0009409 "response to cold" evidence=ISS] [GO:0009790 "embryo
development" evidence=ISS] [GO:0016477 "cell migration"
evidence=ISS] [GO:0019899 "enzyme binding" evidence=ISS]
[GO:0022008 "neurogenesis" evidence=ISS] [GO:0045727 "positive
regulation of translation" evidence=ISS] [GO:0048255 "mRNA
stabilization" evidence=ISS] [GO:0048793 "pronephros development"
evidence=ISS] [GO:0060212 "negative regulation of
nuclear-transcribed mRNA poly(A) tail shortening" evidence=ISS]
[GO:0005840 "ribosome" evidence=ISS] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0005737 GO:GO:0005654 GO:GO:0016477
GO:GO:0022008 GO:GO:0000166 GO:GO:0009409 Gene3D:3.30.70.330
GO:GO:0019899 GO:GO:0048255 GO:GO:0003730 GO:GO:0045727
GO:GO:0007369 eggNOG:COG0724 GO:GO:0048793 HOVERGEN:HBG107480
GO:GO:0060212 KO:K13195 CTD:1153 HOGENOM:HOG000276232 EMBL:CR760272
RefSeq:NP_001017228.1 UniGene:Str.47654 ProteinModelPortal:Q28IQ9
SMR:Q28IQ9 STRING:Q28IQ9 GeneID:549982 KEGG:xtr:549982
Xenbase:XB-GENE-492781 Uniprot:Q28IQ9
Length = 166
Score = 98 (39.6 bits), Expect = 0.00069, P = 0.00069
Identities = 24/83 (28%), Positives = 44/83 (53%)
Query: 16 SIESGTKLYISNLEYGVSNEDIKELFSEVGELKRCSVHFDR-SGRSKGTAEVVLTRRADA 74
S + G KL++ L + + E ++++FS+ G++ V DR S RS+G V DA
Sbjct: 2 SCDEG-KLFVGGLNFETTEESLEQVFSKYGQVAEVVVVKDRESKRSRGFGFVTFENPEDA 60
Query: 75 IAAVKRYNNVQLDGKPMKIEIIG 97
A+ N +DG+ ++++ G
Sbjct: 61 KDAMMAMNGKSVDGRQIRVDQAG 83
>UNIPROTKB|G4MR34 [details] [associations]
symbol:MGG_09885 "Cleavage stimulation factor 64-kDa
subunit" species:242507 "Magnaporthe oryzae 70-15" [GO:0005575
"cellular_component" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:CM001231 KO:K14407 InterPro:IPR025742
InterPro:IPR026896 Pfam:PF14327 Pfam:PF14304 RefSeq:XP_003709978.1
ProteinModelPortal:G4MR34 SMR:G4MR34 EnsemblFungi:MGG_09885T0
GeneID:2680929 KEGG:mgr:MGG_09885 Uniprot:G4MR34
Length = 305
Score = 103 (41.3 bits), Expect = 0.00071, P = 0.00071
Identities = 19/73 (26%), Positives = 42/73 (57%)
Query: 23 LYISNLEYGVSNEDIKELFSEVGELKRCSVHFDR-SGRSKGTAEVVLTRRADAIAAVKRY 81
+++ N+ YG+S E I ++FS G++ + +DR +G+ KG A +AV+
Sbjct: 10 VFVGNIPYGLSEEQITDIFSRAGKVLNFRLVYDRETGKPKGFGFAEYPDNDSAASAVRNL 69
Query: 82 NNVQLDGKPMKIE 94
N+ ++ G+ ++++
Sbjct: 70 NDTEIMGRKLRVD 82
>UNIPROTKB|Q9H361 [details] [associations]
symbol:PABPC3 "Polyadenylate-binding protein 3"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IDA;NAS] [GO:0008143
"poly(A) RNA binding" evidence=IDA] [GO:0016071 "mRNA metabolic
process" evidence=NAS] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0005737 GO:GO:0016071 GO:GO:0000166 Gene3D:3.30.70.330
eggNOG:COG0724 GO:GO:0008143 HOVERGEN:HBG002295 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
HOGENOM:HOG000217922 HPA:HPA045423 EMBL:AF132026 EMBL:AL136900
EMBL:BC027617 IPI:IPI00301154 RefSeq:NP_112241.2 UniGene:Hs.458280
PDB:2D9P PDBsum:2D9P ProteinModelPortal:Q9H361 SMR:Q9H361
IntAct:Q9H361 STRING:Q9H361 PhosphoSite:Q9H361 DMDM:28201852
PaxDb:Q9H361 PRIDE:Q9H361 DNASU:5042 Ensembl:ENST00000281589
GeneID:5042 KEGG:hsa:5042 UCSC:uc001upy.3 CTD:5042
GeneCards:GC13P025670 HGNC:HGNC:8556 MIM:604680 neXtProt:NX_Q9H361
PharmGKB:PA32882 InParanoid:Q9H361 OMA:RTVPRYK OrthoDB:EOG4KH2TN
PhylomeDB:Q9H361 EvolutionaryTrace:Q9H361 GenomeRNAi:5042
NextBio:19414 ArrayExpress:Q9H361 Bgee:Q9H361 CleanEx:HS_PABPC3
Genevestigator:Q9H361 GermOnline:ENSG00000151846 Uniprot:Q9H361
Length = 631
Score = 106 (42.4 bits), Expect = 0.00076, P = 0.00076
Identities = 29/96 (30%), Positives = 44/96 (45%)
Query: 2 IFNGXXXXXXXRSSSIESGTK----LYISNLEYGVSNEDIKELFSEVGELKRCSVHFDRS 57
+F G R + + + K +YI N + +E +K+LF + G V D S
Sbjct: 168 VFVGQFKSRKEREAELGARAKEFPNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDES 227
Query: 58 GRSKGTAEVVLTRRADAIAAVKRYNNVQLDGKPMKI 93
G+SKG V R DA AV N +L+GK + +
Sbjct: 228 GKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYV 263
>FB|FBgn0262475 [details] [associations]
symbol:bru-2 "bruno-2" species:7227 "Drosophila melanogaster"
[GO:0003729 "mRNA binding" evidence=ISS] [GO:0005575
"cellular_component" evidence=ND] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0017148 "negative regulation of translation"
evidence=ISA] [GO:0003723 "RNA binding" evidence=ISA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 EMBL:AE014134 GO:GO:0017148 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 GeneTree:ENSGT00560000076837
RefSeq:NP_001036356.1 UniGene:Dm.412 ProteinModelPortal:Q0E8R3
SMR:Q0E8R3 PRIDE:Q0E8R3 EnsemblMetazoa:FBtr0304856
EnsemblMetazoa:FBtr0332233 GeneID:250811 KEGG:dme:Dmel_CG43065
UCSC:CG31761-RE CTD:250811 FlyBase:FBgn0262475 OMA:AHVANGN
PhylomeDB:Q0E8R3 GenomeRNAi:250811 NextBio:843510 Bgee:Q0E8R3
Uniprot:Q0E8R3
Length = 893
Score = 107 (42.7 bits), Expect = 0.00076, P = 0.00076
Identities = 24/80 (30%), Positives = 46/80 (57%)
Query: 22 KLYISNLEYGVSNEDIKELFSEVGELKRCSVHFDRSGRSKGTAEVVLTRRADAIAAVKRY 81
KL++ L + D+++LF+ G ++ C+V D++G+SKG A V + +AI A+K
Sbjct: 383 KLFVGMLNKKYTEADVRQLFTGHGTIEECTVLRDQAGQSKGCAFVTFATKQNAIGAIKAL 442
Query: 82 NNVQ-LDG--KPMKIEIIGT 98
+ Q ++G P+ ++ T
Sbjct: 443 HQSQTMEGCSAPLVVKFADT 462
>DICTYBASE|DDB_G0277353 [details] [associations]
symbol:DDB_G0277353 "RNA-binding region RNP-1
domain-containing protein" species:44689 "Dictyostelium discoideum"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0008150 "biological_process"
evidence=ND] [GO:0005575 "cellular_component" evidence=ND]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 dictyBase:DDB_G0277353 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AAFI02000019 eggNOG:NOG321849
RefSeq:XP_642758.1 ProteinModelPortal:Q54ZV8
EnsemblProtists:DDB0232331 GeneID:8620947 KEGG:ddi:DDB_G0277353
InParanoid:Q54ZV8 OMA:FNGTHLD Uniprot:Q54ZV8
Length = 633
Score = 106 (42.4 bits), Expect = 0.00076, P = 0.00076
Identities = 23/78 (29%), Positives = 43/78 (55%)
Query: 18 ESGTKLYISNLEYGVSNEDIKELFSEVGELKRCSVHFD-RSGRSKGTAEVVLTRRADAIA 76
E +++ NL Y + +++LF + G L +V FD R+G+SKG A V + DA A
Sbjct: 296 EKSKCIFVGNLPYHFQKQHLEDLFGKFGPLVNINVGFDKRNGQSKGYAFVEFENKPDADA 355
Query: 77 AVKRYNNVQLDGKPMKIE 94
A Y +++ + ++++
Sbjct: 356 AFNEYLVKEVENRKLRLD 373
>ZFIN|ZDB-GENE-030131-3238 [details] [associations]
symbol:pabpc1a "poly A binding protein,
cytoplasmic 1 a" species:7955 "Danio rerio" [GO:0003723 "RNA
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0007507 "heart development" evidence=IMP] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 ZFIN:ZDB-GENE-030131-3238 GO:GO:0007507
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 eggNOG:COG0724
HOVERGEN:HBG002295 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 OrthoDB:EOG40ZQX5
EMBL:BC099992 IPI:IPI00485280 RefSeq:NP_001026846.1
UniGene:Dr.24504 ProteinModelPortal:Q499B6 SMR:Q499B6 STRING:Q499B6
GeneID:606498 KEGG:dre:606498 CTD:606498 InParanoid:Q499B6
NextBio:20892436 ArrayExpress:Q499B6 Uniprot:Q499B6
Length = 634
Score = 106 (42.4 bits), Expect = 0.00076, P = 0.00076
Identities = 25/73 (34%), Positives = 37/73 (50%)
Query: 21 TKLYISNLEYGVSNEDIKELFSEVGELKRCSVHFDRSGRSKGTAEVVLTRRADAIAAVKR 80
T +YI N + +E +KE+F + G V D SG+SKG V R DA AV
Sbjct: 191 TNVYIKNFGEDMDDEKLKEIFCKYGPALSIRVMTDDSGKSKGFGFVSFERHEDAQRAVDE 250
Query: 81 YNNVQLDGKPMKI 93
N +++GK + +
Sbjct: 251 MNGKEMNGKQVYV 263
>UNIPROTKB|F1PQV8 [details] [associations]
symbol:PABPC5 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 KO:K13126
GeneTree:ENSGT00640000091232 CTD:140886 OMA:FSEYGPT
EMBL:AAEX03026633 RefSeq:XP_549122.2 ProteinModelPortal:F1PQV8
Ensembl:ENSCAFT00000027652 GeneID:492002 KEGG:cfa:492002
Uniprot:F1PQV8
Length = 382
Score = 104 (41.7 bits), Expect = 0.00076, P = 0.00076
Identities = 25/83 (30%), Positives = 39/83 (46%)
Query: 13 RSSSIESGTKLYISNLEYGVSNEDIKELFSEVGELKRCSVHFDRSGRSKGTAEVVLTRRA 72
+ S G +YI NL+ + +E +KE FS G + R V + G+ KG V +
Sbjct: 294 KEKSRPPGVPIYIKNLDETIDDEKLKEEFSSFGSISRAKVMVE-VGQGKGFGVVCFSSFE 352
Query: 73 DAIAAVKRYNNVQLDGKPMKIEI 95
DA AV N + KP+ + +
Sbjct: 353 DATKAVDEMNGRTVGSKPLHVTL 375
>UNIPROTKB|G3MY63 [details] [associations]
symbol:BOLL "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00530000063480 EMBL:DAAA02005516 EMBL:DAAA02005517
EMBL:DAAA02005518 Ensembl:ENSBTAT00000065390 Uniprot:G3MY63
Length = 271
Score = 102 (41.0 bits), Expect = 0.00077, P = 0.00077
Identities = 22/96 (22%), Positives = 47/96 (48%)
Query: 22 KLYISNLEYGVSNEDIKELFSEVGELKRCSVHFDRSGRSKGTAEVVLTRRADAIAAVKRY 81
++++ +++ + D+++ FS+ G +K + DR+G SKG V + DA ++
Sbjct: 46 RIFVGGIDFKTNENDLRKFFSQYGSVKEVKIVNDRAGVSKGYGFVTFETQEDAQKILQEA 105
Query: 82 NNVQLDGKPMKI--EIIGTNIG-PPAAVLPITNVMY 114
+ K + I I +G P ++++P MY
Sbjct: 106 EKLNYKDKKLNIGPAIRKQQVGIPRSSIMPAAGTMY 141
>WB|WBGene00003904 [details] [associations]
symbol:pabp-2 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0040019
"positive regulation of embryonic development" evidence=IMP]
[GO:0009792 "embryo development ending in birth or egg hatching"
evidence=IMP] [GO:0040007 "growth" evidence=IMP] [GO:0002119
"nematode larval development" evidence=IMP] [GO:0040011
"locomotion" evidence=IMP] [GO:0040010 "positive regulation of
growth rate" evidence=IMP] [GO:0006898 "receptor-mediated
endocytosis" evidence=IMP] [GO:0000003 "reproduction" evidence=IMP]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0009792 GO:GO:0006898 GO:GO:0040007
GO:GO:0040010 GO:GO:0002119 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0040011 GO:GO:0000003 GO:GO:0003676 GO:GO:0040019 EMBL:Z81037
eggNOG:NOG238057 KO:K14396 HOGENOM:HOG000208465
GeneTree:ENSGT00390000001517 OMA:FETEGQA PIR:T19356
RefSeq:NP_492504.1 ProteinModelPortal:Q93233 SMR:Q93233
DIP:DIP-26233N IntAct:Q93233 MINT:MINT-1047210 STRING:Q93233
PaxDb:Q93233 EnsemblMetazoa:C17E4.5.1 EnsemblMetazoa:C17E4.5.2
GeneID:172768 KEGG:cel:CELE_C17E4.5 UCSC:C17E4.5 CTD:172768
WormBase:C17E4.5 InParanoid:Q93233 NextBio:876929 Uniprot:Q93233
Length = 205
Score = 100 (40.3 bits), Expect = 0.00077, P = 0.00077
Identities = 26/84 (30%), Positives = 47/84 (55%)
Query: 18 ESGTK-LYISNLEYGVSNEDIKELFSEVGELKRCSVHFDR-SGRSKGTAEVVLTRRADAI 75
E+ K +Y+ N++YG + E+I++ F G + R ++ DR SG KG A V T +
Sbjct: 74 EADAKSVYVGNVDYGATAEEIEQHFHGCGSVSRVTIQCDRFSGHPKGFAYVEFTEKEGMQ 133
Query: 76 AAVKRYNNVQLDGKPMKIEIIGTN 99
A+ +++ L G+ +K++ TN
Sbjct: 134 NALAMTDSL-LRGRQIKVDPKRTN 156
>ZFIN|ZDB-GENE-040704-9 [details] [associations]
symbol:elavl2 "ELAV (embryonic lethal, abnormal
vision, Drosophila)-like 2 (Hu antigen B)" species:7955 "Danio
rerio" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005575 "cellular_component" evidence=ND]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-040704-9 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 eggNOG:COG0724 HOVERGEN:HBG002295
HOGENOM:HOG000231162 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 OrthoDB:EOG4JHCFV EMBL:AL954145
IPI:IPI00482002 UniGene:Dr.84858 SMR:Q1MT19
Ensembl:ENSDART00000139420 InParanoid:Q1MT19 Uniprot:Q1MT19
Length = 388
Score = 104 (41.7 bits), Expect = 0.00078, P = 0.00078
Identities = 24/81 (29%), Positives = 44/81 (54%)
Query: 14 SSSIESGTKLYISNLEYGVSNEDIKELFSEVGELKRCSVHFDR-SGRSKGTAEVVLTRRA 72
+ S +S T L ++ L ++ E++K LF +GE++ C + D+ +G+S G V
Sbjct: 61 NGSEDSKTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYMEPK 120
Query: 73 DAIAAVKRYNNVQLDGKPMKI 93
DA A+ N ++L K +K+
Sbjct: 121 DAEKAINTLNGLRLQTKTIKV 141
>UNIPROTKB|Q8N9W6 [details] [associations]
symbol:BOLL "Protein boule-like" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0007275 "multicellular organismal
development" evidence=IEA] [GO:0007283 "spermatogenesis"
evidence=IEA] [GO:0030154 "cell differentiation" evidence=IEA]
[GO:0005515 "protein binding" evidence=IPI] [GO:0008494
"translation activator activity" evidence=IDA] [GO:0045948
"positive regulation of translational initiation" evidence=IDA]
[GO:0005737 "cytoplasm" evidence=IDA] [GO:0007126 "meiosis"
evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0007275 GO:GO:0007126
GO:GO:0005737 GO:GO:0030154 GO:GO:0000166 EMBL:CH471063
Gene3D:3.30.70.330 GO:GO:0007283 GO:GO:0003723 GO:GO:0008494
EMBL:AF272858 EMBL:AM295005 EMBL:AK058099 EMBL:AK093453
EMBL:AK097795 EMBL:AC011997 EMBL:BC033674 IPI:IPI00056506
IPI:IPI00377133 IPI:IPI00396276 IPI:IPI00871244 RefSeq:NP_149019.1
RefSeq:NP_932074.1 UniGene:Hs.169797 ProteinModelPortal:Q8N9W6
SMR:Q8N9W6 IntAct:Q8N9W6 STRING:Q8N9W6 PhosphoSite:Q8N9W6
DMDM:44887719 PRIDE:Q8N9W6 DNASU:66037 Ensembl:ENST00000321801
Ensembl:ENST00000392296 Ensembl:ENST00000433157 GeneID:66037
KEGG:hsa:66037 UCSC:uc002uur.2 UCSC:uc002uus.2 UCSC:uc002uut.2
UCSC:uc002uuu.1 CTD:66037 GeneCards:GC02M198591 H-InvDB:HIX0030239
HGNC:HGNC:14273 HPA:HPA018678 MIM:606165 neXtProt:NX_Q8N9W6
PharmGKB:PA25397 eggNOG:NOG260394 HOGENOM:HOG000095250
HOVERGEN:HBG048761 OrthoDB:EOG4MPHQQ GenomeRNAi:66037 NextBio:67546
ArrayExpress:Q8N9W6 Bgee:Q8N9W6 CleanEx:HS_BOLL
Genevestigator:Q8N9W6 GermOnline:ENSG00000152430 GO:GO:0045948
Uniprot:Q8N9W6
Length = 283
Score = 102 (41.0 bits), Expect = 0.00084, P = 0.00084
Identities = 22/96 (22%), Positives = 47/96 (48%)
Query: 22 KLYISNLEYGVSNEDIKELFSEVGELKRCSVHFDRSGRSKGTAEVVLTRRADAIAAVKRY 81
++++ +++ + D+++ FS+ G +K + DR+G SKG V + DA ++
Sbjct: 34 RIFVGGIDFKTNESDLRKFFSQYGSVKEVKIVNDRAGVSKGYGFVTFETQEDAQKILQEA 93
Query: 82 NNVQLDGKPMKI--EIIGTNIG-PPAAVLPITNVMY 114
+ K + I I +G P ++++P MY
Sbjct: 94 EKLNYKDKKLNIGPAIRKQQVGIPRSSIMPAAGTMY 129
>ZFIN|ZDB-GENE-030131-5228 [details] [associations]
symbol:rnps1 "RNA binding protein S1, serine-rich
domain" species:7955 "Danio rerio" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0008380 "RNA splicing"
evidence=IEA] [GO:0016607 "nuclear speck" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-030131-5228 GO:GO:0005737 GO:GO:0008380
GO:GO:0000166 GO:GO:0016607 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0003723 HSSP:Q9V535 GeneTree:ENSGT00700000104336 CTD:10921
eggNOG:NOG331533 HOGENOM:HOG000044325 KO:K14325 EMBL:BC057251
EMBL:BC065953 IPI:IPI00490683 RefSeq:NP_956055.1 UniGene:Dr.75879
ProteinModelPortal:Q6PG31 STRING:Q6PG31 Ensembl:ENSDART00000128731
GeneID:327020 KEGG:dre:327020 InParanoid:Q6PG31 NextBio:20809844
Bgee:Q6PG31 Uniprot:Q6PG31
Length = 283
Score = 102 (41.0 bits), Expect = 0.00084, P = 0.00084
Identities = 32/100 (32%), Positives = 48/100 (48%)
Query: 13 RSSSIESGTKLYISNLEYGVSNEDIKELFSEVGELKRCSVHFDR--SGRSKGTAEVVLTR 70
R S TKLY+ L V+ + I+E+F+ G++K + DR SKG A V
Sbjct: 129 RRSPSPKPTKLYLGRLTRNVTKDHIQEIFATYGKIKMIDMPSDRLHPNVSKGYAYVEYES 188
Query: 71 RADAIAAVKRYNNVQLDGKPMKIE-IIGTNIGP-PAAVLP 108
DA A+K + Q+DG+ + I+ I P P + P
Sbjct: 189 PEDAQKALKHMDGGQIDGQEITATAILAQRIRPAPRRLSP 228
>UNIPROTKB|C0H859 [details] [associations]
symbol:ncbp2 "Nuclear cap-binding protein subunit 2"
species:8030 "Salmo salar" [GO:0000340 "RNA 7-methylguanosine cap
binding" evidence=ISS] [GO:0006408 "snRNA export from nucleus"
evidence=ISS] [GO:0008380 "RNA splicing" evidence=ISS] [GO:0045292
"mRNA cis splicing, via spliceosome" evidence=ISS] [GO:0046833
"positive regulation of RNA export from nucleus" evidence=ISS]
InterPro:IPR000504 InterPro:IPR012677 InterPro:IPR027157
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0005737 GO:GO:0006417 GO:GO:0000184 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0031047 GO:GO:0000340 GO:GO:0051028
GO:GO:0006370 GO:GO:0045292 PANTHER:PTHR18847 GO:GO:0046833
GO:GO:0006408 EMBL:BT043732 EMBL:BT058515 EMBL:BT060223
UniGene:Ssa.8109 ProteinModelPortal:C0H859 Uniprot:C0H859
Length = 155
Score = 96 (38.9 bits), Expect = 0.00089, P = 0.00089
Identities = 22/79 (27%), Positives = 42/79 (53%)
Query: 17 IESGTKLYISNLEYGVSNEDIKELFSEVGELKRCSVHFDRSGRSK-GTAEVVLTRRADAI 75
++ LY+ NL + + E + ELFS+ G++KR + D+ ++ G V R DA
Sbjct: 35 LKQANTLYVGNLSFYTTEEQVYELFSKSGDVKRIIIGLDKVKKTACGFCFVEYYTRTDAE 94
Query: 76 AAVKRYNNVQLDGKPMKIE 94
A++ N +LD + ++ +
Sbjct: 95 NAMRFVNGTRLDDRIIRTD 113
>UNIPROTKB|C1JGV6 [details] [associations]
symbol:BOLL "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0045948 "positive regulation of translational
initiation" evidence=IEA] [GO:0008494 "translation activator
activity" evidence=IEA] [GO:0007126 "meiosis" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0007126
GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0008494
GO:GO:0045948 GeneTree:ENSGT00530000063480 OMA:YQAPAQC
EMBL:DAAA02005516 EMBL:DAAA02005517 EMBL:DAAA02005518 EMBL:FJ623266
IPI:IPI00867153 UniGene:Bt.25777 Ensembl:ENSBTAT00000044801
Uniprot:C1JGV6
Length = 295
Score = 102 (41.0 bits), Expect = 0.00091, P = 0.00091
Identities = 22/96 (22%), Positives = 47/96 (48%)
Query: 22 KLYISNLEYGVSNEDIKELFSEVGELKRCSVHFDRSGRSKGTAEVVLTRRADAIAAVKRY 81
++++ +++ + D+++ FS+ G +K + DR+G SKG V + DA ++
Sbjct: 46 RIFVGGIDFKTNENDLRKFFSQYGSVKEVKIVNDRAGVSKGYGFVTFETQEDAQKILQEA 105
Query: 82 NNVQLDGKPMKI--EIIGTNIG-PPAAVLPITNVMY 114
+ K + I I +G P ++++P MY
Sbjct: 106 EKLNYKDKKLNIGPAIRKQQVGIPRSSIMPAAGTMY 141
>UNIPROTKB|F1P6I8 [details] [associations]
symbol:BOLL "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0045948 "positive regulation of translational
initiation" evidence=IEA] [GO:0008494 "translation activator
activity" evidence=IEA] [GO:0007126 "meiosis" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0007126
GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0008494
GO:GO:0045948 GeneTree:ENSGT00530000063480 OMA:YQAPAQC
EMBL:AAEX03017986 Ensembl:ENSCAFT00000037605 Uniprot:F1P6I8
Length = 295
Score = 102 (41.0 bits), Expect = 0.00091, P = 0.00091
Identities = 22/96 (22%), Positives = 47/96 (48%)
Query: 22 KLYISNLEYGVSNEDIKELFSEVGELKRCSVHFDRSGRSKGTAEVVLTRRADAIAAVKRY 81
++++ +++ + D+++ FS+ G +K + DR+G SKG V + DA ++
Sbjct: 46 RIFVGGIDFKTNENDLRKFFSQYGSVKEVKIVNDRAGVSKGYGFVTFETQEDAQKILQEA 105
Query: 82 NNVQLDGKPMKI--EIIGTNIG-PPAAVLPITNVMY 114
+ K + I I +G P ++++P MY
Sbjct: 106 EKLNYKDKKLNIGPAIRKQQVGIPRSSIMPAAGTMY 141
WARNING: HSPs involving 4 database sequences were not reported due to the
limiting value of parameter B = 250.
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.315 0.134 0.370 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 192 156 0.00073 106 3 11 23 0.40 32
30 0.42 34
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 254
No. of states in DFA: 535 (57 KB)
Total size of DFA: 116 KB (2077 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 13.35u 0.13s 13.48t Elapsed: 00:00:00
Total cpu time: 13.37u 0.13s 13.50t Elapsed: 00:00:00
Start: Fri May 10 23:26:41 2013 End: Fri May 10 23:26:41 2013
WARNINGS ISSUED: 2