BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 029496
(192 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q28FB9|THOC4_XENTR THO complex subunit 4 OS=Xenopus tropicalis GN=alyref PE=2 SV=1
Length = 260
Score = 111 bits (277), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 81/167 (48%), Positives = 107/167 (64%), Gaps = 19/167 (11%)
Query: 17 IESGTKLYISNLEYGVSNEDIKELFSEVGELKRCSVHFDRSGRSKGTAEVVLTRRADAIA 76
+E+G KL +SNL++GVS+ DI+ELF+E G LK+ +VH+DRSGRS GTA+V R+ADA+
Sbjct: 105 METGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDRSGRSLGTADVHFERKADALK 164
Query: 77 AVKRYNNVQLDGKPMKIEIIGTNIGPPAAVLPITNVMYGNEIGMTRSRLRMGGAIPIERP 136
A+K+YN V LDG+PM I+++ + I A PI +S+ R GG I RP
Sbjct: 165 AMKQYNGVPLDGRPMNIQLVTSQI--EAQRRPI------------QSQSRGGG---ITRP 207
Query: 137 RRGRGGLGGRGGRGGARGGRGRGRGQGAKP--NLSVEDLDADLEKYH 181
R G G G RGG G RGRGRG G P LS E+LDA L+ Y+
Sbjct: 208 RGGAIGFSGANRRGGRGGNRGRGRGAGRNPKQQLSAEELDAQLDAYN 254
>sp|Q58EA2|THO4A_XENLA THO complex subunit 4-A OS=Xenopus laevis GN=alyref-a PE=2 SV=1
Length = 256
Score = 111 bits (277), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 78/181 (43%), Positives = 108/181 (59%), Gaps = 22/181 (12%)
Query: 2 IFNGAVAAAAARSSSIESGTKLYISNLEYGVSNEDIKELFSEVGELKRCSVHFDRSGRSK 61
+F+ A A +E+G KL +SNL++GVS+ DI+ELF+E G LK+ +VH+DRSGRS
Sbjct: 91 LFDSGFGAGAG----METGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDRSGRSL 146
Query: 62 GTAEVVLTRRADAIAAVKRYNNVQLDGKPMKIEIIGTNIGPPAAVLPITNVMYGNEIGMT 121
GTA+V R+ADA+ A+K+YN V LDG+PM I+++ + I A PI
Sbjct: 147 GTADVHFERKADALKAMKQYNGVPLDGRPMNIQLVTSQI--EAQRRPI------------ 192
Query: 122 RSRLRMGGAIPIERPRRGRGGLGG-RGGRGGARGGRGRGRGQGAKPNLSVEDLDADLEKY 180
+S+ R GG + RPR G G G GRGRG G+ K LS E+LDA L+ Y
Sbjct: 193 QSQSRGGG---VTRPRGGTLGFASGNRRGRGGNRGRGRGAGRNPKQQLSAEELDAQLDAY 249
Query: 181 H 181
+
Sbjct: 250 N 250
>sp|B5FXN8|THOC4_TAEGU THO complex subunit 4 OS=Taeniopygia guttata GN=ALYREF PE=2 SV=1
Length = 254
Score = 109 bits (272), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 47/84 (55%), Positives = 68/84 (80%)
Query: 17 IESGTKLYISNLEYGVSNEDIKELFSEVGELKRCSVHFDRSGRSKGTAEVVLTRRADAIA 76
+E+G KL +SNL++GVS+ DI+ELF+E G LK+ +VH+DRSGRS GTA+V R+ADA+
Sbjct: 99 VETGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDRSGRSLGTADVHFERKADALK 158
Query: 77 AVKRYNNVQLDGKPMKIEIIGTNI 100
A+K+YN V LDG+PM I+++ + I
Sbjct: 159 AMKQYNGVPLDGRPMNIQLVTSQI 182
>sp|Q9JJW6|REFP2_MOUSE RNA and export factor-binding protein 2 OS=Mus musculus GN=Refbp2
PE=1 SV=1
Length = 218
Score = 108 bits (270), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 47/86 (54%), Positives = 67/86 (77%)
Query: 17 IESGTKLYISNLEYGVSNEDIKELFSEVGELKRCSVHFDRSGRSKGTAEVVLTRRADAIA 76
+E+G KL +SNL++GVS+ DI+ELF+E G LK+ +V +DRSGRS GTA+V RRADA+
Sbjct: 71 VETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDRSGRSLGTADVHFERRADALK 130
Query: 77 AVKRYNNVQLDGKPMKIEIIGTNIGP 102
A+K+Y V LDG+PM I+++ + I P
Sbjct: 131 AMKQYKGVPLDGRPMDIQLVASQIDP 156
>sp|Q6GLW1|THO4B_XENLA THO complex subunit 4-B OS=Xenopus laevis GN=alyref-b PE=2 SV=1
Length = 256
Score = 105 bits (262), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 46/84 (54%), Positives = 67/84 (79%)
Query: 17 IESGTKLYISNLEYGVSNEDIKELFSEVGELKRCSVHFDRSGRSKGTAEVVLTRRADAIA 76
+E+G KL +SNL++GVS+ DI+ELF+E G LK+ +VH+DRSGRS GTA+V R+ADA+
Sbjct: 101 METGGKLLVSNLDFGVSDADIQELFAEFGSLKKAAVHYDRSGRSLGTADVHFERKADALK 160
Query: 77 AVKRYNNVQLDGKPMKIEIIGTNI 100
A+K+YN V LDG+ M I+++ + I
Sbjct: 161 AMKQYNGVPLDGRSMNIQLVTSQI 184
>sp|Q86V81|THOC4_HUMAN THO complex subunit 4 OS=Homo sapiens GN=ALYREF PE=1 SV=3
Length = 257
Score = 105 bits (261), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 53/102 (51%), Positives = 74/102 (72%), Gaps = 5/102 (4%)
Query: 22 KLYISNLEYGVSNEDIKELFSEVGELKRCSVHFDRSGRSKGTAEVVLTRRADAIAAVKRY 81
KL +SNL++GVS+ DI+ELF+E G LK+ +VH+DRSGRS GTA+V R+ADA+ A+K+Y
Sbjct: 107 KLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDRSGRSLGTADVHFERKADALKAMKQY 166
Query: 82 NNVQLDGKPMKIEIIGTNIGPPAAVLPITNVMYGNEIGMTRS 123
N V LDG+PM I+++ + I A P +V G GMTR+
Sbjct: 167 NGVPLDGRPMNIQLVTSQID--AQRRPAQSVNRG---GMTRN 203
>sp|O08583|THOC4_MOUSE THO complex subunit 4 OS=Mus musculus GN=Alyref PE=1 SV=3
Length = 255
Score = 104 bits (260), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 45/79 (56%), Positives = 64/79 (81%)
Query: 22 KLYISNLEYGVSNEDIKELFSEVGELKRCSVHFDRSGRSKGTAEVVLTRRADAIAAVKRY 81
KL +SNL++GVS+ DI+ELF+E G LK+ +VH+DRSGRS GTA+V R+ADA+ A+K+Y
Sbjct: 106 KLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDRSGRSLGTADVHFERKADALKAMKQY 165
Query: 82 NNVQLDGKPMKIEIIGTNI 100
N V LDG+PM I+++ + I
Sbjct: 166 NGVPLDGRPMNIQLVTSQI 184
>sp|Q3T0I4|THOC4_BOVIN THO complex subunit 4 OS=Bos taurus GN=ALYREF PE=2 SV=1
Length = 257
Score = 103 bits (258), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 45/79 (56%), Positives = 64/79 (81%)
Query: 22 KLYISNLEYGVSNEDIKELFSEVGELKRCSVHFDRSGRSKGTAEVVLTRRADAIAAVKRY 81
KL +SNL++GVS+ DI+ELF+E G LK+ +VH+DRSGRS GTA+V R+ADA+ A+K+Y
Sbjct: 107 KLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDRSGRSLGTADVHFERKADALKAMKQY 166
Query: 82 NNVQLDGKPMKIEIIGTNI 100
N V LDG+PM I+++ + I
Sbjct: 167 NGVPLDGRPMNIQLVTSQI 185
>sp|Q9BY77|PDIP3_HUMAN Polymerase delta-interacting protein 3 OS=Homo sapiens GN=POLDIP3
PE=1 SV=2
Length = 421
Score = 67.4 bits (163), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 41/90 (45%), Positives = 52/90 (57%), Gaps = 9/90 (10%)
Query: 7 VAAAAARSSSIESGTKLYISNLEYGVSNEDIKELFSEVGELKRCS-VHFDRSGRSKGTAE 65
+ AA S +E GTK+ ++NL V+ EDI ELF G LKR VH G AE
Sbjct: 267 LPAAEPVLSPLE-GTKMTVNNLHPRVTEEDIVELFCVCGALKRARLVH-------PGVAE 318
Query: 66 VVLTRRADAIAAVKRYNNVQLDGKPMKIEI 95
VV ++ DAI A K+YNN LDG+PMK +
Sbjct: 319 VVFVKKDDAITAYKKYNNRCLDGQPMKCNL 348
>sp|Q8BG81|PDIP3_MOUSE Polymerase delta-interacting protein 3 OS=Mus musculus GN=Poldip3
PE=2 SV=1
Length = 420
Score = 67.4 bits (163), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 37/77 (48%), Positives = 46/77 (59%), Gaps = 8/77 (10%)
Query: 20 GTKLYISNLEYGVSNEDIKELFSEVGELKRCS-VHFDRSGRSKGTAEVVLTRRADAIAAV 78
GTK+ ++NL V+ EDI ELF G LKR VH G AEVV ++ DAI A
Sbjct: 279 GTKMTVNNLHPRVTEEDIVELFCVCGALKRARLVH-------PGVAEVVFVKKDDAITAY 331
Query: 79 KRYNNVQLDGKPMKIEI 95
K+YNN LDG+PMK +
Sbjct: 332 KKYNNRCLDGQPMKCNL 348
>sp|Q09330|MLO3_SCHPO mRNA export protein mlo3 OS=Schizosaccharomyces pombe (strain 972 /
ATCC 24843) GN=mlo3 PE=1 SV=1
Length = 199
Score = 61.6 bits (148), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 37/93 (39%), Positives = 55/93 (59%), Gaps = 2/93 (2%)
Query: 6 AVAAAAARSSSIESGTKLYISNLEYGVSNEDIKELF-SEVGELKRCSVHFDRSGRSKGTA 64
AV A+A S I +K+ +SNL V+ +KELF +G KR S+ + +GRSKG A
Sbjct: 40 AVNTASALKSVISEESKIIVSNLPTDVTEAQVKELFVKSIGPCKRVSLAYGPNGRSKGIA 99
Query: 65 EVVLTRRADAIAAVKRYNNVQLDG-KPMKIEII 96
++ +R DA A ++Y +DG + MK+EII
Sbjct: 100 TIIFSRPGDATRAYEQYEGRLVDGTRKMKVEII 132
>sp|Q9ZUU4|ROC1_ARATH Ribonucleoprotein At2g37220, chloroplastic OS=Arabidopsis thaliana
GN=At2g37220 PE=1 SV=1
Length = 289
Score = 59.3 bits (142), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 29/101 (28%), Positives = 56/101 (55%), Gaps = 6/101 (5%)
Query: 4 NGAVAAAAARSSSIESGTKLYISNLEYGVSNEDIKELFSEVGELKRCSVHFDR-SGRSKG 62
+G A + S + KL++ NL + V + + +LF G ++ V +D+ +GRS+G
Sbjct: 74 DGFADVAPPKEQSFSADLKLFVGNLPFNVDSAQLAQLFESAGNVEMVEVIYDKITGRSRG 133
Query: 63 TAEVVLTRRADAIAAVKRYNNVQLDGKPMKIEIIGTNIGPP 103
V ++ ++ AA +++N +LDG+P+++ N GPP
Sbjct: 134 FGFVTMSSVSEVEAAAQQFNGYELDGRPLRV-----NAGPP 169
Score = 47.0 bits (110), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 42/74 (56%), Gaps = 1/74 (1%)
Query: 21 TKLYISNLEYGVSNEDIKELFSEVGELKRCSVHFDR-SGRSKGTAEVVLTRRADAIAAVK 79
++Y+ NL +GV + ++ LFSE G++ V +DR SGRSKG V + A+K
Sbjct: 204 NRVYVGNLSWGVDDMALESLFSEQGKVVEARVIYDRDSGRSKGFGFVTYDSSQEVQNAIK 263
Query: 80 RYNNVQLDGKPMKI 93
+ LDG+ +++
Sbjct: 264 SLDGADLDGRQIRV 277
>sp|Q08937|ROC2_NICSY 29 kDa ribonucleoprotein B, chloroplastic OS=Nicotiana sylvestris
PE=2 SV=1
Length = 291
Score = 56.6 bits (135), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 29/79 (36%), Positives = 47/79 (59%), Gaps = 1/79 (1%)
Query: 16 SIESGTKLYISNLEYGVSNEDIKELFSEVGELKRCSVHFDR-SGRSKGTAEVVLTRRADA 74
S++S ++Y+ NL +GV + +KELFSE G + V +DR SGRS+G V + +
Sbjct: 202 SVDSSNRVYVGNLSWGVDDLALKELFSEQGNVVDAKVVYDRDSGRSRGFGFVTYSSSKEV 261
Query: 75 IAAVKRYNNVQLDGKPMKI 93
A+ N V LDG+ +++
Sbjct: 262 NDAIDSLNGVDLDGRSIRV 280
Score = 47.4 bits (111), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 42/143 (29%), Positives = 66/143 (46%), Gaps = 37/143 (25%)
Query: 22 KLYISNLEYGVSNEDIKELFSEVGELKRCSVHFDR-SGRSKGTAEVVLTRRADAIAAVKR 80
KL++ NL + V + + LF G ++ V +D+ +GRS+G V ++ + + AA ++
Sbjct: 88 KLFVGNLPFSVDSAALAGLFERAGNVEMVEVIYDKLTGRSRGFGFVTMSTKEEVEAAEQQ 147
Query: 81 YNNVQLDGKPMKIEIIGTNIGPPAAVLPITNVMYGNEIGMTRSRLRMGGAIPIERPRRGR 140
+N ++DG+ +++ N GP A R GG GR
Sbjct: 148 FNGYEIDGRAIRV-----NAGPAPA---------------KRENSSFGG---------GR 178
Query: 141 GGL----GGRGGR---GGARGGR 156
GG GGR G GGARGGR
Sbjct: 179 GGNSSYGGGRDGNSSFGGARGGR 201
>sp|P49314|ROC2_NICPL 31 kDa ribonucleoprotein, chloroplastic OS=Nicotiana
plumbaginifolia PE=2 SV=1
Length = 292
Score = 55.8 bits (133), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 47/79 (59%), Gaps = 1/79 (1%)
Query: 16 SIESGTKLYISNLEYGVSNEDIKELFSEVGELKRCSVHFDR-SGRSKGTAEVVLTRRADA 74
S++S ++Y+ NL +GV + +KELFSE G + V +DR SGRS+G V + +
Sbjct: 203 SVDSSNRVYVGNLSWGVDDLALKELFSEQGNVVDAKVVYDRDSGRSRGFGFVTYSSAKEV 262
Query: 75 IAAVKRYNNVQLDGKPMKI 93
A+ N + LDG+ +++
Sbjct: 263 NDAIDSLNGIDLDGRSIRV 281
Score = 47.8 bits (112), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 43/143 (30%), Positives = 66/143 (46%), Gaps = 37/143 (25%)
Query: 22 KLYISNLEYGVSNEDIKELFSEVGELKRCSVHFDR-SGRSKGTAEVVLTRRADAIAAVKR 80
KL++ NL + V + + LF G ++ V +D+ SGRS+G V ++ + + AA ++
Sbjct: 89 KLFVGNLPFSVDSAALAGLFERAGNVEIVEVIYDKLSGRSRGFGFVTMSTKEEVEAAEQQ 148
Query: 81 YNNVQLDGKPMKIEIIGTNIGPPAAVLPITNVMYGNEIGMTRSRLRMGGAIPIERPRRGR 140
+N ++DG+ +++ N GP A R GG GR
Sbjct: 149 FNGYEIDGRAIRV-----NAGPAPA---------------KRENSSFGG---------GR 179
Query: 141 GGL----GGRGGR---GGARGGR 156
GG GGR G GGARGGR
Sbjct: 180 GGNSSYGGGRDGNSSFGGARGGR 202
>sp|Q8C854|MYEF2_MOUSE Myelin expression factor 2 OS=Mus musculus GN=Myef2 PE=1 SV=1
Length = 591
Score = 55.1 bits (131), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 46/76 (60%)
Query: 20 GTKLYISNLEYGVSNEDIKELFSEVGELKRCSVHFDRSGRSKGTAEVVLTRRADAIAAVK 79
G+ ++++NL++ V + +KE+FS G +KR + D+ G+S+G V + +A+ A+
Sbjct: 223 GSTIFVANLDFKVGWKKLKEVFSIAGTVKRADIKEDKDGKSRGMGTVTFEQAIEAVQAIS 282
Query: 80 RYNNVQLDGKPMKIEI 95
+N L +PM +++
Sbjct: 283 MFNGQFLFDRPMHVKM 298
Score = 40.0 bits (92), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 38/75 (50%), Gaps = 1/75 (1%)
Query: 21 TKLYISNLEYGVSNEDIKELFSE-VGELKRCSVHFDRSGRSKGTAEVVLTRRADAIAAVK 79
+++ISN+ Y + + IK+L E VGE+ + D G+S+G V A++
Sbjct: 91 NRVFISNIPYDMKWQAIKDLMREKVGEVTYVELFKDAEGKSRGCGVVEFKDEEFVKKALE 150
Query: 80 RYNNVQLDGKPMKIE 94
N L G+P+ I+
Sbjct: 151 TMNKYDLSGRPLNIK 165
Score = 37.7 bits (86), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 17/76 (22%), Positives = 40/76 (52%), Gaps = 1/76 (1%)
Query: 20 GTKLYISNLEYGVSNEDIKELFSEVGELKRCSVHFDRSGRSKGTAEVVLTRRADAIAAVK 79
G ++++ NL + ++ + +KE FS+ G + + + +G+SKG V A A +
Sbjct: 513 GNQIFVRNLPFDLTWQKLKEKFSQCGHVMFAEIKME-NGKSKGCGTVRFESAESAEKACR 571
Query: 80 RYNNVQLDGKPMKIEI 95
N +++ G+ + + +
Sbjct: 572 IMNGIKISGREIDVRL 587
>sp|Q9P2K5|MYEF2_HUMAN Myelin expression factor 2 OS=Homo sapiens GN=MYEF2 PE=1 SV=3
Length = 600
Score = 54.7 bits (130), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 46/76 (60%)
Query: 20 GTKLYISNLEYGVSNEDIKELFSEVGELKRCSVHFDRSGRSKGTAEVVLTRRADAIAAVK 79
G+ ++++NL++ V + +KE+FS G +KR + D+ G+S+G V + +A+ A+
Sbjct: 232 GSTIFVANLDFKVGWKKLKEVFSIAGTVKRADIKEDKDGKSRGMGTVTFEQAIEAVQAIS 291
Query: 80 RYNNVQLDGKPMKIEI 95
+N L +PM +++
Sbjct: 292 MFNGQFLFDRPMHVKM 307
Score = 40.0 bits (92), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 38/75 (50%), Gaps = 1/75 (1%)
Query: 21 TKLYISNLEYGVSNEDIKELFSE-VGELKRCSVHFDRSGRSKGTAEVVLTRRADAIAAVK 79
+++ISN+ Y + + IK+L E VGE+ + D G+S+G V A++
Sbjct: 100 NRVFISNIPYDMKWQAIKDLMREKVGEVTYVELFKDAEGKSRGCGVVEFKDEEFVKKALE 159
Query: 80 RYNNVQLDGKPMKIE 94
N L G+P+ I+
Sbjct: 160 TMNKYDLSGRPLNIK 174
Score = 37.4 bits (85), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 17/76 (22%), Positives = 40/76 (52%), Gaps = 1/76 (1%)
Query: 20 GTKLYISNLEYGVSNEDIKELFSEVGELKRCSVHFDRSGRSKGTAEVVLTRRADAIAAVK 79
G ++++ NL + ++ + +KE FS+ G + + + +G+SKG V A A +
Sbjct: 522 GNQIFVRNLPFDLTWQKLKEKFSQCGHVMFAEIKME-NGKSKGCGTVRFDSPESAEKACR 580
Query: 80 RYNNVQLDGKPMKIEI 95
N +++ G+ + + +
Sbjct: 581 IMNGIKISGREIDVRL 596
>sp|Q05196|PABP5_ARATH Polyadenylate-binding protein 5 OS=Arabidopsis thaliana GN=PAB5
PE=1 SV=3
Length = 682
Score = 54.7 bits (130), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 31/109 (28%), Positives = 53/109 (48%), Gaps = 13/109 (11%)
Query: 20 GTKLYISNLEYGVSNEDIKELFSEVGELKRCSVHFDRSGRSKGTAEVVLTRRADAIAAVK 79
G+ LY+ NL+ V++E +KE+FSE G + C V + G S+G V + +A+ A+K
Sbjct: 341 GSNLYLKNLDDSVNDEKLKEMFSEYGNVTSCKVMMNSQGLSRGFGFVAYSNPEEALLAMK 400
Query: 80 RYNNVQLDGKPMKIEI-------------IGTNIGPPAAVLPITNVMYG 115
N + KP+ + + + T I P + P+ + M G
Sbjct: 401 EMNGKMIGRKPLYVALAQRKEERQAHLQSLFTQIRSPGTMSPVPSPMSG 449
Score = 45.8 bits (107), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 35/67 (52%)
Query: 23 LYISNLEYGVSNEDIKELFSEVGELKRCSVHFDRSGRSKGTAEVVLTRRADAIAAVKRYN 82
++I NL+ + N+ + E FS G + C V D GRSKG V + A AA+ + N
Sbjct: 148 VFIKNLDASIDNKALYETFSSFGTILSCKVAMDVVGRSKGYGFVQFEKEETAQAAIDKLN 207
Query: 83 NVQLDGK 89
+ L+ K
Sbjct: 208 GMLLNDK 214
Score = 40.4 bits (93), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 41/77 (53%)
Query: 10 AAARSSSIESGTKLYISNLEYGVSNEDIKELFSEVGELKRCSVHFDRSGRSKGTAEVVLT 69
A + S ++ S T +Y+ NL ++++++K+ F + G++ V D+SG S+ V
Sbjct: 228 ARSESGAVPSFTNVYVKNLPKEITDDELKKTFGKYGDISSAVVMKDQSGNSRSFGFVNFV 287
Query: 70 RRADAIAAVKRYNNVQL 86
A AV++ N + L
Sbjct: 288 SPEAAAVAVEKMNGISL 304
Score = 36.6 bits (83), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 20/75 (26%), Positives = 38/75 (50%)
Query: 21 TKLYISNLEYGVSNEDIKELFSEVGELKRCSVHFDRSGRSKGTAEVVLTRRADAIAAVKR 80
+ LY+ +L+ V+ + +LF++V + V D + RS G A V DA A++
Sbjct: 59 SSLYVGDLDPSVNESHLLDLFNQVAPVHNLRVCRDLTHRSLGYAYVNFANPEDASRAMES 118
Query: 81 YNNVQLDGKPMKIEI 95
N + +P++I +
Sbjct: 119 LNYAPIRDRPIRIML 133
>sp|P52272|HNRPM_HUMAN Heterogeneous nuclear ribonucleoprotein M OS=Homo sapiens GN=HNRNPM
PE=1 SV=3
Length = 730
Score = 53.5 bits (127), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 45/76 (59%)
Query: 20 GTKLYISNLEYGVSNEDIKELFSEVGELKRCSVHFDRSGRSKGTAEVVLTRRADAIAAVK 79
G+ ++++NL+Y V + +KE+FS G + R + D+ G+S+G V + +A+ A+
Sbjct: 203 GSTVFVANLDYKVGWKKLKEVFSMAGVVVRADILEDKDGKSRGIGTVTFEQSIEAVQAIS 262
Query: 80 RYNNVQLDGKPMKIEI 95
+N L +PM +++
Sbjct: 263 MFNGQLLFDRPMHVKM 278
Score = 41.2 bits (95), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 21/72 (29%), Positives = 37/72 (51%), Gaps = 1/72 (1%)
Query: 24 YISNLEYGVSNEDIKELFSE-VGELKRCSVHFDRSGRSKGTAEVVLTRRADAIAAVKRYN 82
+I+N+ + V + +K+L E VGE+ + D G+S+G A V A + N
Sbjct: 74 FITNIPFDVKWQSLKDLVKEKVGEVTYVELLMDAEGKSRGCAVVEFKMEESMKKAAEVLN 133
Query: 83 NVQLDGKPMKIE 94
L G+P+K++
Sbjct: 134 KHSLSGRPLKVK 145
>sp|Q62826|HNRPM_RAT Heterogeneous nuclear ribonucleoprotein M OS=Rattus norvegicus
GN=Hnrnpm PE=1 SV=4
Length = 690
Score = 53.5 bits (127), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 45/76 (59%)
Query: 20 GTKLYISNLEYGVSNEDIKELFSEVGELKRCSVHFDRSGRSKGTAEVVLTRRADAIAAVK 79
G+ ++++NL+Y V + +KE+FS G + R + D+ G+S+G V + +A+ A+
Sbjct: 163 GSTVFVANLDYKVGWKKLKEVFSMAGVVVRADILEDKDGKSRGIGTVTFEQSIEAVQAIS 222
Query: 80 RYNNVQLDGKPMKIEI 95
+N L +PM +++
Sbjct: 223 MFNGQLLFDRPMHVKM 238
Score = 41.2 bits (95), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 21/72 (29%), Positives = 37/72 (51%), Gaps = 1/72 (1%)
Query: 24 YISNLEYGVSNEDIKELFSE-VGELKRCSVHFDRSGRSKGTAEVVLTRRADAIAAVKRYN 82
+I+N+ + V + +K+L E VGE+ + D G+S+G A V A + N
Sbjct: 73 FITNIPFDVKWQSLKDLVKEKVGEVTYVELLMDAEGKSRGCAVVEFKMEESMKKAAEVLN 132
Query: 83 NVQLDGKPMKIE 94
L G+P+K++
Sbjct: 133 KHSLSGRPLKVK 144
>sp|Q9P3U1|YKX5_SCHPO Uncharacterized RNA-binding protein C328.05 OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=SPAC328.05 PE=4 SV=3
Length = 464
Score = 53.5 bits (127), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 46/78 (58%)
Query: 18 ESGTKLYISNLEYGVSNEDIKELFSEVGELKRCSVHFDRSGRSKGTAEVVLTRRADAIAA 77
E +L++ NL Y V +D+K+LF + G + R + ++ GRS+G VV++ +A+ A
Sbjct: 176 EPDRQLFVGNLPYNVRWQDLKDLFRQAGSVIRADIQMNQEGRSRGIGIVVMSSMKEAMHA 235
Query: 78 VKRYNNVQLDGKPMKIEI 95
++ +N G+ +++ +
Sbjct: 236 IQMLHNTDFMGRTLEVRL 253
Score = 50.4 bits (119), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 31/131 (23%), Positives = 60/131 (45%), Gaps = 21/131 (16%)
Query: 23 LYISNLEYGVSNEDIKELFSEVGELKRCSVHFDRSGRSKGTAEVVLTRRADAIAAVKRYN 82
+Y+ NL + S+ ++ +LF+++G + R + ++ +GRSKG V DA +++++ N
Sbjct: 312 IYVGNLPWATSDRNLLDLFTDIGSVIRARIAYEPTGRSKGFGVVQFENENDAASSIEKLN 371
Query: 83 NVQLDGKPMKIE-----------------IIGTNIGPPAAVLPITNVMYGNEIGMTRSRL 125
+ G+P+++ + PP +P TN + T S L
Sbjct: 372 GYRYGGRPLQLSYAHYATPLPAVPTVLSGLPSVAYTPPVMHIPTTNSPLTPQ-SFTNSFL 430
Query: 126 RMGGAIPIERP 136
G +PI P
Sbjct: 431 ---GYLPISMP 438
Score = 38.1 bits (87), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 21/72 (29%), Positives = 38/72 (52%)
Query: 22 KLYISNLEYGVSNEDIKELFSEVGELKRCSVHFDRSGRSKGTAEVVLTRRADAIAAVKRY 81
++Y+ NL Y V ++KE +VG + C + +G SKG A + + +A A+K
Sbjct: 78 RVYVGNLSYQVRWFELKEFMGQVGNVLNCEILNLPNGLSKGCAIIEYSTAEEARTAIKTL 137
Query: 82 NNVQLDGKPMKI 93
+N + G+ + I
Sbjct: 138 SNQKFMGRLVYI 149
>sp|Q9D0E1|HNRPM_MOUSE Heterogeneous nuclear ribonucleoprotein M OS=Mus musculus GN=Hnrnpm
PE=1 SV=3
Length = 729
Score = 52.4 bits (124), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 45/76 (59%)
Query: 20 GTKLYISNLEYGVSNEDIKELFSEVGELKRCSVHFDRSGRSKGTAEVVLTRRADAIAAVK 79
G+ ++++NL+Y V + +KE+FS G + R + D+ G+S+G V + +A+ A+
Sbjct: 202 GSTVFVANLDYKVGWKKLKEVFSMAGVVVRADILEDKDGKSRGIGIVTFEQSIEAVQAIS 261
Query: 80 RYNNVQLDGKPMKIEI 95
+N L +PM +++
Sbjct: 262 MFNGQLLFDRPMHVKM 277
Score = 40.8 bits (94), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 21/72 (29%), Positives = 37/72 (51%), Gaps = 1/72 (1%)
Query: 24 YISNLEYGVSNEDIKELFSE-VGELKRCSVHFDRSGRSKGTAEVVLTRRADAIAAVKRYN 82
+I+N+ + V + +K+L E VGE+ + D G+S+G A V A + N
Sbjct: 73 FITNIPFDVKWQSLKDLVKEKVGEVTYVELLMDAEGKSRGCAVVEFKMEESMKKAAEVLN 132
Query: 83 NVQLDGKPMKIE 94
L G+P+K++
Sbjct: 133 KHSLSGRPLKVK 144
>sp|P25555|GBP2_YEAST Single-strand telomeric DNA-binding protein GBP2 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=GBP2 PE=1
SV=1
Length = 427
Score = 51.2 bits (121), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 22/85 (25%), Positives = 49/85 (57%)
Query: 9 AAAARSSSIESGTKLYISNLEYGVSNEDIKELFSEVGELKRCSVHFDRSGRSKGTAEVVL 68
+ A I++G +++I NL Y ++ + +K++F E G + R V D +G S+G V+
Sbjct: 207 SKKATREEIDNGFEVFIINLPYSMNWQSLKDMFKECGHVLRADVELDFNGFSRGFGSVIY 266
Query: 69 TRRADAIAAVKRYNNVQLDGKPMKI 93
+ I A+ +N ++++G+ +++
Sbjct: 267 PTEDEMIRAIDTFNGMEVEGRVLEV 291
Score = 37.0 bits (84), Expect = 0.088, Method: Compositional matrix adjust.
Identities = 18/71 (25%), Positives = 34/71 (47%)
Query: 23 LYISNLEYGVSNEDIKELFSEVGELKRCSVHFDRSGRSKGTAEVVLTRRADAIAAVKRYN 82
+Y SNL + + D+ +LF +G++ + +G+ G A V DA +++ N
Sbjct: 351 IYCSNLPFSTARSDLFDLFGPIGKINNAELKPQENGQPTGVAVVEYENLVDADFCIQKLN 410
Query: 83 NVQLDGKPMKI 93
N G ++I
Sbjct: 411 NYNYGGCSLQI 421
Score = 33.9 bits (76), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 16/60 (26%), Positives = 30/60 (50%), Gaps = 1/60 (1%)
Query: 23 LYISNLEYGVSNEDIKELFSEVGELKRCSVHFDRSGRSKGTAEVVLTRRADAIAAVKRYN 82
+++ NL + + ED+KELF VGE+ + G +G V T+ A+ +++
Sbjct: 124 IFVRNLTFDCTPEDLKELFGTVGEVVEADI-ITSKGHHRGMGTVEFTKNESVQDAISKFD 182
>sp|Q0U1G2|PABP_PHANO Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Phaeosphaeria nodorum (strain SN15 / ATCC MYA-4574 /
FGSC 10173) GN=PAB1 PE=3 SV=3
Length = 744
Score = 49.7 bits (117), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 41/73 (56%)
Query: 21 TKLYISNLEYGVSNEDIKELFSEVGELKRCSVHFDRSGRSKGTAEVVLTRRADAIAAVKR 80
T +Y+ N++ V++ED +ELF + G++ S+ D G+S+G V R A AV
Sbjct: 229 TNIYVKNIDLDVTDEDFRELFEKHGDITSASIARDDQGKSRGFGFVNYIRHEAAAVAVDH 288
Query: 81 YNNVQLDGKPMKI 93
N+++ G+ + +
Sbjct: 289 LNDIEFKGQKLYV 301
Score = 36.6 bits (83), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 33/67 (49%)
Query: 23 LYISNLEYGVSNEDIKELFSEVGELKRCSVHFDRSGRSKGTAEVVLTRRADAIAAVKRYN 82
++I NL++ + N+ + + F+ G + C V D G SKG V A A+K N
Sbjct: 138 VFIKNLDHAIDNKALHDTFAAFGNILSCKVAQDELGNSKGYGFVHYETAEAANNAIKHVN 197
Query: 83 NVQLDGK 89
+ L+ K
Sbjct: 198 GMLLNEK 204
Score = 33.9 bits (76), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 40/89 (44%), Gaps = 1/89 (1%)
Query: 6 AVAAAAARSSSIESGTKLYISNLEYGVSNEDIKELFSEVGELKRCSVHFDR-SGRSKGTA 64
A A + ++ LY+ L+ V+ + ELFS +G++ V D + RS G A
Sbjct: 33 APTPTTAAQQAHQNSASLYVGELDPSVTEAMLFELFSSIGQVASIRVCRDAVTRRSLGYA 92
Query: 65 EVVLTRRADAIAAVKRYNNVQLDGKPMKI 93
V D A++ N + GKP +I
Sbjct: 93 YVNYNSSEDGEKALEELNYTVIKGKPCRI 121
>sp|Q43349|ROC2_ARATH 29 kDa ribonucleoprotein, chloroplastic OS=Arabidopsis thaliana
GN=RBP29 PE=1 SV=2
Length = 342
Score = 49.7 bits (117), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 43/74 (58%), Gaps = 1/74 (1%)
Query: 21 TKLYISNLEYGVSNEDIKELFSEVGELKRCSVHFDR-SGRSKGTAEVVLTRRADAIAAVK 79
+LY+ NL +GV + ++ LF+E G++ V +DR SGRSKG V L+ + A+
Sbjct: 257 NRLYVGNLSWGVDDMALENLFNEQGKVVEARVIYDRDSGRSKGFGFVTLSSSQEVQKAIN 316
Query: 80 RYNNVQLDGKPMKI 93
N LDG+ +++
Sbjct: 317 SLNGADLDGRQIRV 330
Score = 48.1 bits (113), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 27/96 (28%), Positives = 53/96 (55%), Gaps = 6/96 (6%)
Query: 9 AAAARSSSIESGTKLYISNLEYGVSNEDIKELFSEVGELKRCSVHFDR-SGRSKGTAEVV 67
+A +S KL++ NL + V + + +LF G ++ V +D+ +GRS+G V
Sbjct: 87 SAPVERNSFSPDLKLFVGNLSFNVDSAQLAQLFESAGNVEMVEVIYDKVTGRSRGFGFVT 146
Query: 68 LTRRADAIAAVKRYNNVQLDGKPMKIEIIGTNIGPP 103
++ A+ AA +++N + +G+P+++ N GPP
Sbjct: 147 MSTAAEVEAAAQQFNGYEFEGRPLRV-----NAGPP 177
>sp|Q08935|ROC1_NICSY 29 kDa ribonucleoprotein A, chloroplastic OS=Nicotiana sylvestris
PE=2 SV=1
Length = 273
Score = 49.3 bits (116), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 48/83 (57%), Gaps = 6/83 (7%)
Query: 22 KLYISNLEYGVSNEDIKELFSEVGELKRCSVHFDR-SGRSKGTAEVVLTRRADAIAAVKR 80
K+++ NL + + + ELF G ++ V +D+ +GRS+G V ++ + + AA ++
Sbjct: 88 KIFVGNLPFSADSAALAELFERAGNVEMVEVIYDKLTGRSRGFGFVTMSSKEEVEAACQQ 147
Query: 81 YNNVQLDGKPMKIEIIGTNIGPP 103
+N +LDG+ +++ N GPP
Sbjct: 148 FNGYELDGRALRV-----NSGPP 165
Score = 43.9 bits (102), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 44/73 (60%), Gaps = 1/73 (1%)
Query: 22 KLYISNLEYGVSNEDIKELFSEVGELKRCSVHFDR-SGRSKGTAEVVLTRRADAIAAVKR 80
++Y+ NL +GV + ++ LFSE G++ V +DR SGRS+G V + + A++
Sbjct: 189 RVYVGNLAWGVDQDALETLFSEQGKVVDAKVVYDRDSGRSRGFGFVTYSSAEEVNNAIES 248
Query: 81 YNNVQLDGKPMKI 93
+ V L+G+ +++
Sbjct: 249 LDGVDLNGRAIRV 261
>sp|P49313|ROC1_NICPL 30 kDa ribonucleoprotein, chloroplastic OS=Nicotiana
plumbaginifolia PE=2 SV=1
Length = 279
Score = 48.9 bits (115), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 48/83 (57%), Gaps = 6/83 (7%)
Query: 22 KLYISNLEYGVSNEDIKELFSEVGELKRCSVHFDR-SGRSKGTAEVVLTRRADAIAAVKR 80
K+++ NL + + + ELF G ++ V +D+ +GRS+G V ++ + + AA ++
Sbjct: 88 KIFVGNLLFSADSAALAELFERAGNVEMVEVIYDKLTGRSRGFGFVTMSSKEEVEAACQQ 147
Query: 81 YNNVQLDGKPMKIEIIGTNIGPP 103
+N +LDG+ +++ N GPP
Sbjct: 148 FNGYELDGRALRV-----NSGPP 165
Score = 43.9 bits (102), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 44/73 (60%), Gaps = 1/73 (1%)
Query: 22 KLYISNLEYGVSNEDIKELFSEVGELKRCSVHFDR-SGRSKGTAEVVLTRRADAIAAVKR 80
++Y+ NL +GV + ++ LFSE G++ V +DR SGRS+G V + + A++
Sbjct: 195 RVYVGNLAWGVDQDALETLFSEQGKVVDAKVVYDRDSGRSRGFGFVTYSSAEEVNNAIES 254
Query: 81 YNNVQLDGKPMKI 93
+ V L+G+ +++
Sbjct: 255 LDGVDLNGRAIRV 267
>sp|P42731|PABP2_ARATH Polyadenylate-binding protein 2 OS=Arabidopsis thaliana GN=PAB2
PE=1 SV=1
Length = 629
Score = 48.5 bits (114), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 41/75 (54%)
Query: 21 TKLYISNLEYGVSNEDIKELFSEVGELKRCSVHFDRSGRSKGTAEVVLTRRADAIAAVKR 80
+ LY+ NL+ +S+E +KE+FS G + V D +G SKG+ V +A A+ +
Sbjct: 318 SNLYVKNLDPSISDEKLKEIFSPFGTVTSSKVMRDPNGTSKGSGFVAFATPEEATEAMSQ 377
Query: 81 YNNVQLDGKPMKIEI 95
+ ++ KP+ + I
Sbjct: 378 LSGKMIESKPLYVAI 392
Score = 42.0 bits (97), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 20/71 (28%), Positives = 37/71 (52%)
Query: 23 LYISNLEYGVSNEDIKELFSEVGELKRCSVHFDRSGRSKGTAEVVLTRRADAIAAVKRYN 82
++I NL+ + ++ + + FS G + C V D SG+SKG V A A+++ N
Sbjct: 126 IFIKNLDESIDHKALHDTFSSFGNIVSCKVAVDSSGQSKGYGFVQYANEESAQKAIEKLN 185
Query: 83 NVQLDGKPMKI 93
+ L+ K + +
Sbjct: 186 GMLLNDKQVYV 196
Score = 41.6 bits (96), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 34/69 (49%)
Query: 21 TKLYISNLEYGVSNEDIKELFSEVGELKRCSVHFDRSGRSKGTAEVVLTRRADAIAAVKR 80
T +Y+ NL +++D+K F E G++ V D G+SKG V DA AV+
Sbjct: 215 TNVYVKNLAESTTDDDLKNAFGEYGKITSAVVMKDGEGKSKGFGFVNFENADDAARAVES 274
Query: 81 YNNVQLDGK 89
N + D K
Sbjct: 275 LNGHKFDDK 283
>sp|Q9CZ96|ZCRB1_MOUSE Zinc finger CCHC-type and RNA-binding motif-containing protein 1
OS=Mus musculus GN=Zcrb1 PE=1 SV=1
Length = 217
Score = 48.5 bits (114), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 47/82 (57%), Gaps = 1/82 (1%)
Query: 19 SGTKLYISNLEYGVSNEDIKELFSEVGELKRCSVHFDRSGR-SKGTAEVVLTRRADAIAA 77
S + +Y+SNL + ++N D+ +FS+ G++ + ++ D+ R SKG A ++ + A+
Sbjct: 8 SKSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSALNC 67
Query: 78 VKRYNNVQLDGKPMKIEIIGTN 99
+ NN QL G+ +K I N
Sbjct: 68 TRAINNKQLFGRVIKASIAIDN 89
>sp|P19684|ROC5_NICSY 33 kDa ribonucleoprotein, chloroplastic OS=Nicotiana sylvestris
PE=1 SV=1
Length = 324
Score = 48.5 bits (114), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 26/95 (27%), Positives = 55/95 (57%), Gaps = 4/95 (4%)
Query: 7 VAAAAARSSS---IESGTKLYISNLEYGVSNEDIKELFSEVGELKRCSVHFDRS-GRSKG 62
V +A RS+ ++S KLY++NL + ++++ +++ F++ V +DRS GRS+G
Sbjct: 200 VMSAKIRSTYQGFVDSPHKLYVANLSWALTSQGLRDAFADQPGFMSAKVIYDRSSGRSRG 259
Query: 63 TAEVVLTRRADAIAAVKRYNNVQLDGKPMKIEIIG 97
+ + +A+ N V+L+G+P+++ + G
Sbjct: 260 FGFITFSSAEAMNSALDTMNEVELEGRPLRLNVAG 294
Score = 44.3 bits (103), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 45/77 (58%), Gaps = 1/77 (1%)
Query: 20 GTKLYISNLEYGVSNEDIKELFSEVGELKRCSVHFDR-SGRSKGTAEVVLTRRADAIAAV 78
G +LY+ NL + +++ + E+F+E G + + +DR + RS+G A V + +A A+
Sbjct: 113 GGRLYVGNLPFSMTSSQLSEIFAEAGTVANVEIVYDRVTDRSRGFAFVTMGSVEEAKEAI 172
Query: 79 KRYNNVQLDGKPMKIEI 95
+ ++ Q+ G+ +K+
Sbjct: 173 RLFDGSQVGGRTVKVNF 189
>sp|Q499V6|ZCRB1_RAT Zinc finger CCHC-type and RNA-binding motif-containing protein 1
OS=Rattus norvegicus GN=Zcrb1 PE=2 SV=1
Length = 217
Score = 48.5 bits (114), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 47/82 (57%), Gaps = 1/82 (1%)
Query: 19 SGTKLYISNLEYGVSNEDIKELFSEVGELKRCSVHFDRSGR-SKGTAEVVLTRRADAIAA 77
S + +Y+SNL + ++N D+ +FS+ G++ + ++ D+ R SKG A ++ + A+
Sbjct: 8 SKSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSALNC 67
Query: 78 VKRYNNVQLDGKPMKIEIIGTN 99
+ NN QL G+ +K I N
Sbjct: 68 TRAINNKQLFGRVIKASIAIDN 89
>sp|Q0CR95|PABP_ASPTN Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Aspergillus terreus (strain NIH 2624 / FGSC A1156)
GN=pab1 PE=3 SV=1
Length = 753
Score = 48.5 bits (114), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 26/96 (27%), Positives = 50/96 (52%), Gaps = 4/96 (4%)
Query: 2 IFNGAVAAAAARSSSIE----SGTKLYISNLEYGVSNEDIKELFSEVGELKRCSVHFDRS 57
+F G + R S E + T +YI NL+ +S E+ +++F + GE+ ++ D+
Sbjct: 206 VFVGHHISKKDRQSKFEEMKANFTNVYIKNLDQEISEEEFRQMFEKFGEITSATLSRDQE 265
Query: 58 GRSKGTAEVVLTRRADAIAAVKRYNNVQLDGKPMKI 93
G+S+G V + A AAV N+ ++ G+ + +
Sbjct: 266 GKSRGFGFVNYSTHDSAQAAVDEMNDKEVKGQKLYV 301
Score = 37.7 bits (86), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 39/81 (48%), Gaps = 1/81 (1%)
Query: 14 SSSIESGTKLYISNLEYGVSNEDIKELFSEVGELKRCSVHFDR-SGRSKGTAEVVLTRRA 72
S+S LY+ L+ V+ + ELFS +G++ V D + RS G A V A
Sbjct: 41 STSQPHSASLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTA 100
Query: 73 DAIAAVKRYNNVQLDGKPMKI 93
D A++ N + GKP +I
Sbjct: 101 DGERALEDLNYTLIKGKPCRI 121
Score = 37.0 bits (84), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 32/67 (47%)
Query: 23 LYISNLEYGVSNEDIKELFSEVGELKRCSVHFDRSGRSKGTAEVVLTRRADAIAAVKRYN 82
++I NL+ + N+ + + F+ G + C V D G SKG V A A+K N
Sbjct: 138 VFIKNLDAAIDNKALHDTFAAFGNILSCKVAQDEFGNSKGYGFVHYETAEAANNAIKHVN 197
Query: 83 NVQLDGK 89
+ L+ K
Sbjct: 198 GMLLNDK 204
>sp|Q6DJI9|ZCRB1_XENLA Zinc finger CCHC-type and RNA-binding motif-containing protein 1
OS=Xenopus laevis GN=zcrb1 PE=2 SV=1
Length = 218
Score = 48.1 bits (113), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 47/82 (57%), Gaps = 1/82 (1%)
Query: 19 SGTKLYISNLEYGVSNEDIKELFSEVGELKRCSVHFDRSGR-SKGTAEVVLTRRADAIAA 77
S + +Y+SNL + ++N D+ +FS+ G++ + ++ D+ R SKG + V+ + A
Sbjct: 8 SKSTVYVSNLPFSLTNNDLHRIFSKYGKVVKVTILKDKDSRKSKGVSFVLFLDKESAQNC 67
Query: 78 VKRYNNVQLDGKPMKIEIIGTN 99
V+ NN QL G+ +K I N
Sbjct: 68 VRGLNNKQLFGRAIKASIAKDN 89
>sp|Q5AJS6|MRD1_CANAL Multiple RNA-binding domain-containing protein 1 OS=Candida
albicans (strain SC5314 / ATCC MYA-2876) GN=MRD1 PE=3
SV=1
Length = 841
Score = 48.1 bits (113), Expect = 4e-05, Method: Composition-based stats.
Identities = 26/81 (32%), Positives = 42/81 (51%), Gaps = 1/81 (1%)
Query: 14 SSSIESGTKLYISNLEYGVSNEDIKELFSEVGELKRCSVHFD-RSGRSKGTAEVVLTRRA 72
+ IE +L+I N+ Y S ED + LFS+ G L+ + D R+G+SKG V ++
Sbjct: 303 AQKIEETGRLFIRNISYEASEEDFRSLFSQYGALEEVHIAIDTRTGKSKGFLYVQFLKKE 362
Query: 73 DAIAAVKRYNNVQLDGKPMKI 93
DA A + + G+ + I
Sbjct: 363 DATRAYRSLDKQIFQGRLLHI 383
Score = 31.2 bits (69), Expect = 4.9, Method: Composition-based stats.
Identities = 21/70 (30%), Positives = 35/70 (50%), Gaps = 4/70 (5%)
Query: 27 NLEYGVSNEDIKELFSEVGELK--RCSVHFDRSGRSKGTAEVVLTRRADAIAAVKRYNNV 84
NL + + +D+ ELF G+LK R FD+S R E L + A+ A+ + V
Sbjct: 723 NLPFEATRKDLLELFGAFGQLKSVRVPKKFDQSARGFAFVEFNLMKEAE--TAMSQLEGV 780
Query: 85 QLDGKPMKIE 94
L G+ + ++
Sbjct: 781 HLLGRRLVMQ 790
>sp|Q5AI15|PABP_CANAL Polyadenylate-binding protein, cytoplasmic and nuclear OS=Candida
albicans (strain SC5314 / ATCC MYA-2876) GN=PAB1 PE=3
SV=1
Length = 629
Score = 47.8 bits (112), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 39/77 (50%)
Query: 19 SGTKLYISNLEYGVSNEDIKELFSEVGELKRCSVHFDRSGRSKGTAEVVLTRRADAIAAV 78
G L++ NL+ + +E ++E F G + V D +G+SKG V T +A A+
Sbjct: 334 QGVNLFVKNLDDTIDSEKLEEEFKPFGTITSAKVMVDEAGKSKGFGFVCFTTPEEATKAI 393
Query: 79 KRYNNVQLDGKPMKIEI 95
N ++GKP+ + +
Sbjct: 394 TEMNTRMINGKPLYVAL 410
Score = 46.2 bits (108), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/96 (26%), Positives = 48/96 (50%), Gaps = 4/96 (4%)
Query: 2 IFNGAVAAAAARSSSIE----SGTKLYISNLEYGVSNEDIKELFSEVGELKRCSVHFDRS 57
+F G + R S E + T +Y+ N++ S E ++LFS G++ + D+
Sbjct: 210 VFVGKHISKKDRESKFEEMKANFTNIYVKNIDLNYSEESFEKLFSPFGKITSIYLEKDQD 269
Query: 58 GRSKGTAEVVLTRRADAIAAVKRYNNVQLDGKPMKI 93
G+SKG V A+ AV+ N+ +++G+ + +
Sbjct: 270 GKSKGFGFVNFEDHESAVKAVEELNDKEINGQKIYV 305
Score = 33.9 bits (76), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 38/77 (49%), Gaps = 1/77 (1%)
Query: 18 ESGTKLYISNLEYGVSNEDIKELFSEVGELKRCSVHFDR-SGRSKGTAEVVLTRRADAIA 76
E+ LY+ L V+ + E+FS +G++ V D S +S G A V + D
Sbjct: 49 ENSASLYVGELNPSVNEATLFEIFSPIGQVSSIRVCRDAVSKKSLGYAYVNYHKYEDGEK 108
Query: 77 AVKRYNNVQLDGKPMKI 93
A++ N ++G+P +I
Sbjct: 109 AIEELNYNPIEGRPCRI 125
Score = 31.2 bits (69), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 13/39 (33%), Positives = 22/39 (56%)
Query: 23 LYISNLEYGVSNEDIKELFSEVGELKRCSVHFDRSGRSK 61
++I NL + N+ + + FS G++ C V D G+SK
Sbjct: 142 IFIKNLHPAIDNKALHDTFSAFGKILSCKVATDEFGQSK 180
>sp|Q9ZQA8|PABPX_ARATH Probable polyadenylate-binding protein At2g36660 OS=Arabidopsis
thaliana GN=At2g36660 PE=3 SV=1
Length = 609
Score = 47.8 bits (112), Expect = 5e-05, Method: Composition-based stats.
Identities = 22/75 (29%), Positives = 41/75 (54%)
Query: 21 TKLYISNLEYGVSNEDIKELFSEVGELKRCSVHFDRSGRSKGTAEVVLTRRADAIAAVKR 80
+ +Y+ N+ V+ E++++ FS+ G + + D G+SKG V + +AI AVK
Sbjct: 304 SNIYVKNVNVAVTEEELRKHFSQCGTITSTKLMCDEKGKSKGFGFVCFSTPEEAIDAVKT 363
Query: 81 YNNVQLDGKPMKIEI 95
++ GKP+ + I
Sbjct: 364 FHGQMFHGKPLYVAI 378
Score = 35.4 bits (80), Expect = 0.25, Method: Composition-based stats.
Identities = 24/88 (27%), Positives = 39/88 (44%)
Query: 2 IFNGAVAAAAARSSSIESGTKLYISNLEYGVSNEDIKELFSEVGELKRCSVHFDRSGRSK 61
I+ G R E T LY+ NL+ VS + ++E F+E G++ ++ D + +
Sbjct: 182 IYVGKFMKKTDRVKPEEKYTNLYMKNLDADVSEDLLREKFAEFGKIVSLAIAKDENRLCR 241
Query: 62 GTAEVVLTRRADAIAAVKRYNNVQLDGK 89
G A V DA A + N + K
Sbjct: 242 GYAFVNFDNPEDARRAAETVNGTKFGSK 269
Score = 33.1 bits (74), Expect = 1.0, Method: Composition-based stats.
Identities = 21/88 (23%), Positives = 44/88 (50%), Gaps = 3/88 (3%)
Query: 6 AVAAAAARSSSIESGTKLYISNLEYGVSNEDIKELFSEVGELKRCSVHFDRSGRSKGTAE 65
+V A AR + + + +++ NL V+N ++++F + G + C V G+S+G
Sbjct: 100 SVRAPDARRNGVGN---VFVKNLPESVTNAVLQDMFKKFGNIVSCKVATLEDGKSRGYGF 156
Query: 66 VVLTRRADAIAAVKRYNNVQLDGKPMKI 93
V + A AA++ N+ + K + +
Sbjct: 157 VQFEQEDAAHAAIQTLNSTIVADKEIYV 184
>sp|A1D4K4|PABP_NEOFI Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Neosartorya fischeri (strain ATCC 1020 / DSM 3700 /
FGSC A1164 / NRRL 181) GN=pab1 PE=3 SV=1
Length = 751
Score = 47.4 bits (111), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 25/96 (26%), Positives = 51/96 (53%), Gaps = 4/96 (4%)
Query: 2 IFNGAVAAAAARSSSIE----SGTKLYISNLEYGVSNEDIKELFSEVGELKRCSVHFDRS 57
+F G + R S E + T +YI N++ V++E+ +++F + GE+ ++ D+
Sbjct: 210 VFVGHHISKKDRQSKFEEMKANFTNVYIKNIDQEVTDEEFRKMFEKFGEITSATLSRDQE 269
Query: 58 GRSKGTAEVVLTRRADAIAAVKRYNNVQLDGKPMKI 93
G+S+G V + A AAV N+ ++ G+ + +
Sbjct: 270 GKSRGFGFVNFSTHDSAQAAVDEMNDKEIKGQKLYV 305
Score = 37.7 bits (86), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 43/89 (48%), Gaps = 1/89 (1%)
Query: 6 AVAAAAARSSSIESGTKLYISNLEYGVSNEDIKELFSEVGELKRCSVHFDR-SGRSKGTA 64
+ + +A S++ LY+ L+ V+ + ELFS +G++ V D + RS G A
Sbjct: 37 SASPSATPSANQPHSASLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYA 96
Query: 65 EVVLTRRADAIAAVKRYNNVQLDGKPMKI 93
V AD A++ N + GKP +I
Sbjct: 97 YVNYNNTADGERALEDLNYTLIKGKPCRI 125
Score = 37.0 bits (84), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 32/67 (47%)
Query: 23 LYISNLEYGVSNEDIKELFSEVGELKRCSVHFDRSGRSKGTAEVVLTRRADAIAAVKRYN 82
++I NL+ + N+ + + F+ G + C V D G SKG V A A+K N
Sbjct: 142 VFIKNLDAAIDNKALHDTFAAFGNILSCKVAQDEFGNSKGYGFVHYETAEAANNAIKHVN 201
Query: 83 NVQLDGK 89
+ L+ K
Sbjct: 202 GMLLNDK 208
Score = 33.1 bits (74), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 23/47 (48%)
Query: 9 AAAARSSSIESGTKLYISNLEYGVSNEDIKELFSEVGELKRCSVHFD 55
AA +S G LY+ NL V +E ++ELFS G + V D
Sbjct: 324 AARLEKASKYQGVNLYVKNLTDDVDDEKLRELFSPFGTITSAKVMRD 370
>sp|Q4WK03|PABP_ASPFU Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Neosartorya fumigata (strain ATCC MYA-4609 / Af293 /
CBS 101355 / FGSC A1100) GN=pab1 PE=3 SV=1
Length = 753
Score = 47.4 bits (111), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 25/96 (26%), Positives = 51/96 (53%), Gaps = 4/96 (4%)
Query: 2 IFNGAVAAAAARSSSIE----SGTKLYISNLEYGVSNEDIKELFSEVGELKRCSVHFDRS 57
+F G + R S E + T +YI N++ V++E+ +++F + GE+ ++ D+
Sbjct: 210 VFVGHHISKKDRQSKFEEMKANFTNVYIKNIDQEVTDEEFRKMFEKFGEITSATLSRDQE 269
Query: 58 GRSKGTAEVVLTRRADAIAAVKRYNNVQLDGKPMKI 93
G+S+G V + A AAV N+ ++ G+ + +
Sbjct: 270 GKSRGFGFVNFSTHDSAQAAVDEMNDKEIKGQKLYV 305
Score = 37.4 bits (85), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 42/89 (47%), Gaps = 1/89 (1%)
Query: 6 AVAAAAARSSSIESGTKLYISNLEYGVSNEDIKELFSEVGELKRCSVHFDR-SGRSKGTA 64
+ + + S+S LY+ L+ V+ + ELFS +G++ V D + RS G A
Sbjct: 37 SASPSTTPSASQPHSASLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYA 96
Query: 65 EVVLTRRADAIAAVKRYNNVQLDGKPMKI 93
V AD A++ N + GKP +I
Sbjct: 97 YVNYNNTADGERALEDLNYTLIKGKPCRI 125
Score = 37.0 bits (84), Expect = 0.087, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 32/67 (47%)
Query: 23 LYISNLEYGVSNEDIKELFSEVGELKRCSVHFDRSGRSKGTAEVVLTRRADAIAAVKRYN 82
++I NL+ + N+ + + F+ G + C V D G SKG V A A+K N
Sbjct: 142 VFIKNLDAAIDNKALHDTFAAFGNILSCKVAQDEFGNSKGYGFVHYETAEAANNAIKHVN 201
Query: 83 NVQLDGK 89
+ L+ K
Sbjct: 202 GMLLNDK 208
Score = 32.7 bits (73), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 23/47 (48%)
Query: 9 AAAARSSSIESGTKLYISNLEYGVSNEDIKELFSEVGELKRCSVHFD 55
AA +S G LY+ NL V +E ++ELFS G + V D
Sbjct: 324 AARLEKASKYQGVNLYVKNLTDDVDDEKLRELFSPFGTITSAKVMRD 370
>sp|Q7SG09|MRD1_NEUCR Multiple RNA-binding domain-containing protein 1 OS=Neurospora
crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 /
DSM 1257 / FGSC 987) GN=mrd-1 PE=3 SV=1
Length = 827
Score = 47.4 bits (111), Expect = 7e-05, Method: Composition-based stats.
Identities = 32/91 (35%), Positives = 48/91 (52%), Gaps = 8/91 (8%)
Query: 15 SSIESGTKLYISNLEYGVSNEDIKELFSEVGELKRCSVHFDRSGRSKGTAEVVLTRRADA 74
S IE ++L++ NL Y V+ +D++E F++ G L V D G SKG A + + A A
Sbjct: 302 SLIEKTSRLFLRNLSYTVTEDDVREHFAKFGILVEVHVPLDSKGHSKGFAMIRYEKPASA 361
Query: 75 IAAVKRYNNVQLDGKPMKIEIIGTNIGPPAA 105
+AA Q DG + I+ +I P AA
Sbjct: 362 LAA------FQTDGTVFQGRIV--HILPAAA 384
Score = 33.5 bits (75), Expect = 0.94, Method: Composition-based stats.
Identities = 22/77 (28%), Positives = 40/77 (51%), Gaps = 4/77 (5%)
Query: 20 GTKLYISNLEYGVSNEDIKELFSEVGELK--RCSVHFDRSGRSKGTAEVVLTRRADAIAA 77
GTKL + NL + V+ ++++ LFS G+L R F++S R AE + +A+ A
Sbjct: 703 GTKLVVKNLPFEVTKKEVRTLFSAYGKLVALRIPKKFNQSSRGFAFAE--FSTAKEALNA 760
Query: 78 VKRYNNVQLDGKPMKIE 94
+ + G+ + I+
Sbjct: 761 FNSLKDTHILGRRLVID 777
>sp|P31209|PABP_SCHPO Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=pab1 PE=1 SV=2
Length = 653
Score = 47.0 bits (110), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 37/76 (48%)
Query: 20 GTKLYISNLEYGVSNEDIKELFSEVGELKRCSVHFDRSGRSKGTAEVVLTRRADAIAAVK 79
G L+I NL+ V +E +K FS G + + D G+SKG V T +A AV
Sbjct: 363 GVNLFIKNLQDEVDDERLKAEFSAFGTITSAKIMTDEQGKSKGFGFVCYTTPEEANKAVT 422
Query: 80 RYNNVQLDGKPMKIEI 95
N L GKP+ + +
Sbjct: 423 EMNQRMLAGKPLYVAL 438
Score = 38.5 bits (88), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 34/67 (50%)
Query: 23 LYISNLEYGVSNEDIKELFSEVGELKRCSVHFDRSGRSKGTAEVVLTRRADAIAAVKRYN 82
++I NL+ + N+ + + FS G++ C V D G +KG V A AA++ N
Sbjct: 170 VFIKNLDPAIDNKALHDTFSAFGKILSCKVAVDELGNAKGYGFVHFDSVESANAAIEHVN 229
Query: 83 NVQLDGK 89
+ L+ K
Sbjct: 230 GMLLNDK 236
Score = 38.1 bits (87), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 22/85 (25%), Positives = 42/85 (49%), Gaps = 4/85 (4%)
Query: 13 RSSSIES----GTKLYISNLEYGVSNEDIKELFSEVGELKRCSVHFDRSGRSKGTAEVVL 68
R S +E+ T +YI NL+ ++ ++ +LF + GE+ S+ D++ + +G V
Sbjct: 249 RQSKVEALKANFTNVYIKNLDTEITEQEFSDLFGQFGEITSLSLVKDQNDKPRGFGFVNY 308
Query: 69 TRRADAIAAVKRYNNVQLDGKPMKI 93
A AV N+ + GK + +
Sbjct: 309 ANHECAQKAVDELNDKEYKGKKLYV 333
Score = 31.6 bits (70), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 23/87 (26%), Positives = 39/87 (44%), Gaps = 1/87 (1%)
Query: 8 AAAAARSSSIESGTKLYISNLEYGVSNEDIKELFSEVGELKRCSVHFDR-SGRSKGTAEV 66
++ A S + + LY+ L+ V+ + ELF+ +G + V D + RS G A V
Sbjct: 67 SSVATPSGTAPTSASLYVGELDPSVTEAMLFELFNSIGPVASIRVCRDAVTRRSLGYAYV 126
Query: 67 VLTRRADAIAAVKRYNNVQLDGKPMKI 93
D A+ N + G+P +I
Sbjct: 127 NFHNMEDGEKALDELNYTLIKGRPCRI 153
>sp|Q2UK72|PABP_ASPOR Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Aspergillus oryzae (strain ATCC 42149 / RIB 40)
GN=pab1 PE=3 SV=1
Length = 765
Score = 47.0 bits (110), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 45/89 (50%), Gaps = 4/89 (4%)
Query: 2 IFNGAVAAAAARSSSIE----SGTKLYISNLEYGVSNEDIKELFSEVGELKRCSVHFDRS 57
+F G + R S E + T +YI N++ V+ E+ +ELF + GE+ ++ D+
Sbjct: 207 VFVGHHISKKDRQSKFEEMKANFTNVYIKNIDQDVTEEEFRELFEKFGEITSATLSRDQE 266
Query: 58 GRSKGTAEVVLTRRADAIAAVKRYNNVQL 86
G+S+G V + A AAV N ++
Sbjct: 267 GKSRGFGFVNFSTHESAQAAVDEMNEKEI 295
Score = 39.7 bits (91), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 43/89 (48%), Gaps = 1/89 (1%)
Query: 6 AVAAAAARSSSIESGTKLYISNLEYGVSNEDIKELFSEVGELKRCSVHFDR-SGRSKGTA 64
AV + A ++S LY+ L+ V+ + ELFS +G++ V D + RS G A
Sbjct: 34 AVESTTAPNASQPHSASLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYA 93
Query: 65 EVVLTRRADAIAAVKRYNNVQLDGKPMKI 93
V AD A++ N + GKP +I
Sbjct: 94 YVNYNNTADGERALEDLNYTLIKGKPCRI 122
Score = 36.6 bits (83), Expect = 0.096, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 32/67 (47%)
Query: 23 LYISNLEYGVSNEDIKELFSEVGELKRCSVHFDRSGRSKGTAEVVLTRRADAIAAVKRYN 82
++I NL+ + N+ + + F+ G + C V D G SKG V A A+K N
Sbjct: 139 VFIKNLDSAIDNKALHDTFAAFGNILSCKVAQDEFGNSKGYGFVHYETAEAANNAIKHVN 198
Query: 83 NVQLDGK 89
+ L+ K
Sbjct: 199 GMLLNDK 205
Score = 30.4 bits (67), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 25/57 (43%)
Query: 9 AAAARSSSIESGTKLYISNLEYGVSNEDIKELFSEVGELKRCSVHFDRSGRSKGTAE 65
AA +S G LY+ NL V +E ++ELF G + V D + T E
Sbjct: 321 AARLEKASKYQGVNLYVKNLTDDVDDEKLRELFGPYGTITSAKVMRDTNIERTQTPE 377
>sp|P19683|ROC4_NICSY 31 kDa ribonucleoprotein, chloroplastic OS=Nicotiana sylvestris
PE=1 SV=1
Length = 315
Score = 46.6 bits (109), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 47/81 (58%), Gaps = 1/81 (1%)
Query: 16 SIESGTKLYISNLEYGVSNEDIKELFSEVGELKRCSVHFDR-SGRSKGTAEVVLTRRADA 74
+ E ++Y+ N+ +G+ + +++LFSE G++ V +DR +GRS+G V + A+
Sbjct: 225 TFEQSYRIYVGNIPWGIDDARLEQLFSEHGKVVSARVVYDRETGRSRGFGFVTMASEAEM 284
Query: 75 IAAVKRYNNVQLDGKPMKIEI 95
A+ + LDG+ +++ +
Sbjct: 285 SDAIANLDGQSLDGRTIRVNV 305
Score = 39.3 bits (90), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 42/73 (57%), Gaps = 1/73 (1%)
Query: 22 KLYISNLEYGVSNEDIKELFSEVGELKRCSVHFDR-SGRSKGTAEVVLTRRADAIAAVKR 80
KL++ NL Y V +E + LF + G ++ V ++R + +S+G V ++ +A AV+
Sbjct: 137 KLFVGNLPYDVDSEGLARLFEQAGVVEIAEVIYNRDTDQSRGFGFVTMSTVEEAEKAVEM 196
Query: 81 YNNVQLDGKPMKI 93
YN ++G+ + +
Sbjct: 197 YNRYDVNGRLLTV 209
>sp|P29341|PABP1_MOUSE Polyadenylate-binding protein 1 OS=Mus musculus GN=Pabpc1 PE=1 SV=2
Length = 636
Score = 46.6 bits (109), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/69 (39%), Positives = 35/69 (50%)
Query: 21 TKLYISNLEYGVSNEDIKELFSEVGELKRCSVHFDRSGRSKGTAEVVLTRRADAIAAVKR 80
T +YI N + +E +KELF + G V D SG+SKG V R DA AV
Sbjct: 191 TNVYIKNFGEDMDDERLKELFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDE 250
Query: 81 YNNVQLDGK 89
N +L+GK
Sbjct: 251 MNGKELNGK 259
Score = 39.3 bits (90), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 38/76 (50%), Gaps = 1/76 (1%)
Query: 20 GTKLYISNLEYGVSNEDIKELFSEVGELKRCSVHFDRSGRSKGTAEVVLTRRADAIAAVK 79
G LY+ NL+ G+ +E +++ FS G + V + GRSKG V + +A AV
Sbjct: 293 GVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMME-GGRSKGFGFVCFSSPEEATKAVT 351
Query: 80 RYNNVQLDGKPMKIEI 95
N + KP+ + +
Sbjct: 352 EMNGRIVATKPLYVAL 367
Score = 33.1 bits (74), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 19/67 (28%), Positives = 35/67 (52%), Gaps = 1/67 (1%)
Query: 23 LYISNLEYGVSNEDIKELFSEVGELKRCSVHFDRSGRSKGTAEVVLTRRADAIAAVKRYN 82
++I NL+ + N+ + + FS G + C V D +G SKG V + A A+++ N
Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMN 159
Query: 83 NVQLDGK 89
+ L+ +
Sbjct: 160 GMLLNDR 166
Score = 31.2 bits (69), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 35/72 (48%), Gaps = 1/72 (1%)
Query: 23 LYISNLEYGVSNEDIKELFSEVGELKRCSVHFDR-SGRSKGTAEVVLTRRADAIAAVKRY 81
LY+ +L V+ + E FS G + V D + RS G A V + ADA A+
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 82 NNVQLDGKPMKI 93
N + GKP++I
Sbjct: 73 NFDVIKGKPVRI 84
>sp|Q9EPH8|PABP1_RAT Polyadenylate-binding protein 1 OS=Rattus norvegicus GN=Pabpc1 PE=2
SV=1
Length = 636
Score = 46.6 bits (109), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/69 (39%), Positives = 35/69 (50%)
Query: 21 TKLYISNLEYGVSNEDIKELFSEVGELKRCSVHFDRSGRSKGTAEVVLTRRADAIAAVKR 80
T +YI N + +E +KELF + G V D SG+SKG V R DA AV
Sbjct: 191 TNVYIKNFGEDMDDERLKELFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDE 250
Query: 81 YNNVQLDGK 89
N +L+GK
Sbjct: 251 MNGKELNGK 259
Score = 39.3 bits (90), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 38/76 (50%), Gaps = 1/76 (1%)
Query: 20 GTKLYISNLEYGVSNEDIKELFSEVGELKRCSVHFDRSGRSKGTAEVVLTRRADAIAAVK 79
G LY+ NL+ G+ +E +++ FS G + V + GRSKG V + +A AV
Sbjct: 293 GVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMME-GGRSKGFGFVCFSSPEEATKAVT 351
Query: 80 RYNNVQLDGKPMKIEI 95
N + KP+ + +
Sbjct: 352 EMNGRIVATKPLYVAL 367
Score = 33.1 bits (74), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 19/67 (28%), Positives = 35/67 (52%), Gaps = 1/67 (1%)
Query: 23 LYISNLEYGVSNEDIKELFSEVGELKRCSVHFDRSGRSKGTAEVVLTRRADAIAAVKRYN 82
++I NL+ + N+ + + FS G + C V D +G SKG V + A A+++ N
Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMN 159
Query: 83 NVQLDGK 89
+ L+ +
Sbjct: 160 GMLLNDR 166
Score = 30.8 bits (68), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 35/72 (48%), Gaps = 1/72 (1%)
Query: 23 LYISNLEYGVSNEDIKELFSEVGELKRCSVHFDR-SGRSKGTAEVVLTRRADAIAAVKRY 81
LY+ +L V+ + E FS G + V D + RS G A V + ADA A+
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 82 NNVQLDGKPMKI 93
N + GKP++I
Sbjct: 73 NFDVIKGKPVRI 84
>sp|Q56JZ7|ZCRB1_BOVIN Zinc finger CCHC-type and RNA-binding motif-containing protein 1
OS=Bos taurus GN=ZCRB1 PE=2 SV=1
Length = 217
Score = 46.2 bits (108), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 46/78 (58%), Gaps = 1/78 (1%)
Query: 19 SGTKLYISNLEYGVSNEDIKELFSEVGELKRCSVHFDR-SGRSKGTAEVVLTRRADAIAA 77
S + +Y+SNL + ++N D+ +FS+ G++ + ++ D+ + RSKG A ++ + A
Sbjct: 8 SKSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRRSKGVAFILFLDKDSAQNC 67
Query: 78 VKRYNNVQLDGKPMKIEI 95
+ NN QL G+ +K I
Sbjct: 68 TRAINNKQLFGRVIKASI 85
>sp|Q9Y580|RBM7_HUMAN RNA-binding protein 7 OS=Homo sapiens GN=RBM7 PE=1 SV=1
Length = 266
Score = 46.2 bits (108), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 33/113 (29%), Positives = 52/113 (46%), Gaps = 9/113 (7%)
Query: 5 GAVAAAAARSSSIESGTKLYISNLEYGVSNEDIKELFSEVGELKRCSVHFDRSGRSKGTA 64
GA AA A R+ L++ NLE V+ E + ELF + G + + + D+ G+ K A
Sbjct: 2 GAAAAEADRT--------LFVGNLETKVTEELLFELFHQAGPVIKVKIPKDKDGKPKQFA 53
Query: 65 EVVLTRRADAIAAVKRYNNVQLDGKPMKIEI-IGTNIGPPAAVLPITNVMYGN 116
V A+ N ++L G+P+KI+ G++ P L GN
Sbjct: 54 FVNFKHEVSVPYAMNLLNGIKLYGRPIKIQFRSGSSHAPQDVSLSYPQHHVGN 106
>sp|Q9WX39|RBPF_NOSS1 Putative RNA-binding protein RbpF OS=Nostoc sp. (strain PCC 7120
/ UTEX 2576) GN=rbpF PE=3 SV=3
Length = 105
Score = 46.2 bits (108), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 43/72 (59%), Gaps = 1/72 (1%)
Query: 23 LYISNLEYGVSNEDIKELFSEVGELKRCSVHFDR-SGRSKGTAEVVLTRRADAIAAVKRY 81
+Y+ NL Y V+ EDI +F+E G +KR + DR +GR +G A V + A+ AA++
Sbjct: 3 IYVGNLSYEVTQEDISNVFAEYGSVKRVVLPTDRETGRLRGFAFVEMGSDAEETAAIEGL 62
Query: 82 NNVQLDGKPMKI 93
+ + G+ +K+
Sbjct: 63 DGAEWMGRDLKV 74
>sp|O64380|PABP3_ARATH Polyadenylate-binding protein 3 OS=Arabidopsis thaliana GN=PAB3
PE=2 SV=1
Length = 660
Score = 46.2 bits (108), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 36/67 (53%)
Query: 23 LYISNLEYGVSNEDIKELFSEVGELKRCSVHFDRSGRSKGTAEVVLTRRADAIAAVKRYN 82
++I NL+ + N+ + E FS G + C V D +GRSKG V + A AA+ + N
Sbjct: 138 IFIKNLDASIDNKALFETFSSFGTILSCKVAMDVTGRSKGYGFVQFEKEESAQAAIDKLN 197
Query: 83 NVQLDGK 89
+ ++ K
Sbjct: 198 GMLMNDK 204
Score = 46.2 bits (108), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 39/76 (51%)
Query: 20 GTKLYISNLEYGVSNEDIKELFSEVGELKRCSVHFDRSGRSKGTAEVVLTRRADAIAAVK 79
G LY+ NL+ V +E +KE+FSE G + V + G S+G V + +A+ A+
Sbjct: 331 GANLYLKNLDDSVDDEKLKEMFSEYGNVTSSKVMLNPQGMSRGFGFVAYSNPEEALRALS 390
Query: 80 RYNNVQLDGKPMKIEI 95
N + KP+ I +
Sbjct: 391 EMNGKMIGRKPLYIAL 406
Score = 33.9 bits (76), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 20/75 (26%), Positives = 37/75 (49%)
Query: 21 TKLYISNLEYGVSNEDIKELFSEVGELKRCSVHFDRSGRSKGTAEVVLTRRADAIAAVKR 80
+ LY +L+ V+ + +LF V + V D++ RS G A + + DA A++
Sbjct: 49 SSLYAGDLDPKVTEAHLFDLFKHVANVVSVRVCRDQNRRSLGYAYINFSNPNDAYRAMEA 108
Query: 81 YNNVQLDGKPMKIEI 95
N L +P++I +
Sbjct: 109 LNYTPLFDRPIRIML 123
Score = 30.8 bits (68), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 17/66 (25%), Positives = 33/66 (50%)
Query: 21 TKLYISNLEYGVSNEDIKELFSEVGELKRCSVHFDRSGRSKGTAEVVLTRRADAIAAVKR 80
T +Y+ NL + +++++ F + G + V D+SG S+ V A +AV++
Sbjct: 229 TNVYVKNLPKEIGEDELRKTFGKFGVISSAVVMRDQSGNSRCFGFVNFECTEAAASAVEK 288
Query: 81 YNNVQL 86
N + L
Sbjct: 289 MNGISL 294
>sp|Q8TBF4|ZCRB1_HUMAN Zinc finger CCHC-type and RNA-binding motif-containing protein 1
OS=Homo sapiens GN=ZCRB1 PE=1 SV=2
Length = 217
Score = 46.2 bits (108), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 46/82 (56%), Gaps = 1/82 (1%)
Query: 19 SGTKLYISNLEYGVSNEDIKELFSEVGELKRCSVHFDRSGR-SKGTAEVVLTRRADAIAA 77
S + +Y+SNL + ++N D+ +FS+ G++ + ++ D+ R SKG A ++ + A
Sbjct: 8 SKSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNC 67
Query: 78 VKRYNNVQLDGKPMKIEIIGTN 99
+ NN QL G+ +K I N
Sbjct: 68 TRAINNKQLFGRVIKASIAIDN 89
>sp|A5DM21|PABP_PICGU Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Meyerozyma guilliermondii (strain ATCC 6260 / CBS 566
/ DSM 6381 / JCM 1539 / NBRC 10279 / NRRL Y-324) GN=PAB1
PE=3 SV=2
Length = 631
Score = 46.2 bits (108), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 26/96 (27%), Positives = 45/96 (46%), Gaps = 4/96 (4%)
Query: 2 IFNGAVAAAAARSSSIE----SGTKLYISNLEYGVSNEDIKELFSEVGELKRCSVHFDRS 57
+F G + R S E + T +Y+ NL V N +E+F G + + D+
Sbjct: 216 VFVGKHVSKRDRESKFEEMKANFTNVYVKNLAPEVDNAKFEEIFKPFGPVTSVHLETDQE 275
Query: 58 GRSKGTAEVVLTRRADAIAAVKRYNNVQLDGKPMKI 93
G+S+G V A+ AVK N+ ++DG+ + +
Sbjct: 276 GKSRGFGFVNFENHESALNAVKEMNDKEIDGQKLYV 311
Score = 45.8 bits (107), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 38/77 (49%)
Query: 19 SGTKLYISNLEYGVSNEDIKELFSEVGELKRCSVHFDRSGRSKGTAEVVLTRRADAIAAV 78
G L++ NL+ + +E ++E F G + V D +G+SKG V + +A A+
Sbjct: 340 QGVNLFVKNLDDSIDSEKLEEEFKPFGTITSARVMVDDAGKSKGFGFVCFSSPEEATKAI 399
Query: 79 KRYNNVQLDGKPMKIEI 95
N + GKP+ + +
Sbjct: 400 TEMNQRMIQGKPLYVAL 416
Score = 35.0 bits (79), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 37/72 (51%), Gaps = 1/72 (1%)
Query: 23 LYISNLEYGVSNEDIKELFSEVGELKRCSVHFDR-SGRSKGTAEVVLTRRADAIAAVKRY 81
LY+ L V+ + E+FS +G++ V D + +S G A V + AD A++
Sbjct: 60 LYVGELNPSVNEALLFEIFSPIGQVSSIRVCRDAVTKKSLGYAYVNFHKHADGSRAIEEL 119
Query: 82 NNVQLDGKPMKI 93
N +DG+P +I
Sbjct: 120 NYSLVDGRPCRI 131
Score = 30.8 bits (68), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 13/39 (33%), Positives = 21/39 (53%)
Query: 23 LYISNLEYGVSNEDIKELFSEVGELKRCSVHFDRSGRSK 61
++I NL + N+ + + FS G + C V D G+SK
Sbjct: 148 IFIKNLHPAIDNKALHDTFSAFGRILSCKVATDELGQSK 186
>sp|A5DW14|PABP_LODEL Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Lodderomyces elongisporus (strain ATCC 11503 / CBS
2605 / JCM 1781 / NBRC 1676 / NRRL YB-4239) GN=PAB1 PE=3
SV=1
Length = 661
Score = 46.2 bits (108), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 21/76 (27%), Positives = 39/76 (51%)
Query: 20 GTKLYISNLEYGVSNEDIKELFSEVGELKRCSVHFDRSGRSKGTAEVVLTRRADAIAAVK 79
G L++ NL+ + +E ++E F G + V D +G+SKG V + +A A+
Sbjct: 350 GVNLFVKNLDEQIDSEKLEEEFKPFGTITSSKVMVDDAGKSKGFGFVCFSTPEEATKAIT 409
Query: 80 RYNNVQLDGKPMKIEI 95
N ++GKP+ + +
Sbjct: 410 EMNQRMVNGKPLYVAL 425
Score = 40.4 bits (93), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 22/96 (22%), Positives = 48/96 (50%), Gaps = 4/96 (4%)
Query: 2 IFNGAVAAAAARSSSIE----SGTKLYISNLEYGVSNEDIKELFSEVGELKRCSVHFDRS 57
++ G + R S +E + T +Y+ N++ + ++ +ELF+ G++ + D
Sbjct: 225 VYVGKHVSKKDRESKLEEMKANYTNIYVKNIDLAYTEKEFEELFAPFGKITSIYLEKDAE 284
Query: 58 GRSKGTAEVVLTRRADAIAAVKRYNNVQLDGKPMKI 93
G+SKG V A AV+ N+ +++G+ + +
Sbjct: 285 GKSKGFGFVNFEEHEAAAKAVEELNDKEINGQKIYV 320
Score = 34.3 bits (77), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 38/77 (49%), Gaps = 1/77 (1%)
Query: 18 ESGTKLYISNLEYGVSNEDIKELFSEVGELKRCSVHFDR-SGRSKGTAEVVLTRRADAIA 76
E+ LY+ L V+ + E+FS +G++ V D S +S G A V + D
Sbjct: 64 ENSASLYVGELNPSVNEATLFEIFSPIGQVASIRVCRDAVSKKSLGYAYVNYHKLEDGEK 123
Query: 77 AVKRYNNVQLDGKPMKI 93
A++ N ++G+P +I
Sbjct: 124 AIEELNYTPVEGRPCRI 140
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.316 0.136 0.386
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 77,000,787
Number of Sequences: 539616
Number of extensions: 3696099
Number of successful extensions: 35053
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 831
Number of HSP's successfully gapped in prelim test: 590
Number of HSP's that attempted gapping in prelim test: 21555
Number of HSP's gapped (non-prelim): 10366
length of query: 192
length of database: 191,569,459
effective HSP length: 111
effective length of query: 81
effective length of database: 131,672,083
effective search space: 10665438723
effective search space used: 10665438723
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 58 (26.9 bits)