Query 029496
Match_columns 192
No_of_seqs 234 out of 2153
Neff 8.6
Searched_HMMs 46136
Date Fri Mar 29 13:50:30 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029496.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/029496hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03134 glycine-rich RNA-bind 99.9 9.7E-22 2.1E-26 145.4 15.2 86 14-99 28-114 (144)
2 KOG0533 RRM motif-containing p 99.9 7.1E-21 1.5E-25 150.2 16.5 163 16-186 79-242 (243)
3 TIGR01659 sex-lethal sex-letha 99.8 5.3E-18 1.2E-22 141.8 17.0 84 18-101 191-277 (346)
4 KOG0105 Alternative splicing f 99.8 1.3E-17 2.9E-22 124.7 11.4 79 18-98 4-82 (241)
5 TIGR01661 ELAV_HUD_SF ELAV/HuD 99.7 1.4E-17 3.1E-22 139.5 12.2 82 19-100 268-350 (352)
6 TIGR01659 sex-lethal sex-letha 99.7 2.1E-17 4.6E-22 138.2 11.7 83 16-98 103-186 (346)
7 TIGR01661 ELAV_HUD_SF ELAV/HuD 99.7 2.9E-17 6.3E-22 137.6 11.0 82 19-100 2-84 (352)
8 KOG0113 U1 small nuclear ribon 99.7 1.4E-16 3.1E-21 126.8 14.2 96 16-111 97-193 (335)
9 KOG0107 Alternative splicing f 99.7 1E-16 2.2E-21 118.9 12.3 80 18-101 8-87 (195)
10 PF00076 RRM_1: RNA recognitio 99.7 3.9E-17 8.5E-22 105.4 8.8 70 23-92 1-70 (70)
11 KOG0121 Nuclear cap-binding pr 99.7 1.7E-17 3.7E-22 117.2 7.4 83 16-98 32-115 (153)
12 KOG0122 Translation initiation 99.7 6.3E-17 1.4E-21 125.7 10.9 84 16-99 185-269 (270)
13 KOG4207 Predicted splicing fac 99.7 1.3E-16 2.8E-21 121.3 10.9 88 14-101 7-95 (256)
14 KOG0149 Predicted RNA-binding 99.7 1.3E-16 2.8E-21 123.4 7.3 79 19-98 11-90 (247)
15 KOG0125 Ataxin 2-binding prote 99.7 3.2E-16 6.8E-21 126.3 9.3 92 10-102 86-177 (376)
16 TIGR01648 hnRNP-R-Q heterogene 99.6 4.7E-15 1E-19 130.6 15.7 77 18-101 231-309 (578)
17 PF14259 RRM_6: RNA recognitio 99.6 1.6E-15 3.5E-20 98.3 9.1 70 23-92 1-70 (70)
18 TIGR01645 half-pint poly-U bin 99.6 3.3E-15 7.2E-20 132.0 12.1 83 19-101 203-286 (612)
19 PLN03120 nucleic acid binding 99.6 3.7E-15 8E-20 118.5 11.1 78 20-100 4-81 (260)
20 KOG0130 RNA-binding protein RB 99.6 3.9E-15 8.5E-20 106.2 8.3 87 15-101 67-154 (170)
21 TIGR01645 half-pint poly-U bin 99.6 3E-15 6.4E-20 132.3 9.5 81 16-96 103-184 (612)
22 TIGR01642 U2AF_lg U2 snRNP aux 99.6 1.5E-14 3.2E-19 126.9 12.4 82 18-99 293-375 (509)
23 KOG0131 Splicing factor 3b, su 99.6 3.5E-15 7.5E-20 111.4 7.1 84 15-98 4-88 (203)
24 PLN03213 repressor of silencin 99.6 6.9E-15 1.5E-19 124.3 9.2 79 18-99 8-88 (759)
25 TIGR01648 hnRNP-R-Q heterogene 99.6 1.2E-14 2.5E-19 128.2 10.5 78 17-94 55-133 (578)
26 TIGR01628 PABP-1234 polyadenyl 99.6 1.2E-14 2.6E-19 129.2 10.7 77 21-97 1-78 (562)
27 TIGR01622 SF-CC1 splicing fact 99.6 1.9E-14 4.1E-19 124.7 11.4 80 20-99 186-266 (457)
28 TIGR01628 PABP-1234 polyadenyl 99.6 1.9E-14 4E-19 127.9 11.3 83 17-99 282-364 (562)
29 smart00362 RRM_2 RNA recogniti 99.6 2.7E-14 5.9E-19 91.3 9.1 72 22-94 1-72 (72)
30 KOG0126 Predicted RNA-binding 99.6 4.7E-16 1E-20 116.1 0.6 82 18-99 33-115 (219)
31 KOG0117 Heterogeneous nuclear 99.6 2.9E-14 6.2E-19 119.1 11.1 86 15-100 78-165 (506)
32 PLN03121 nucleic acid binding 99.6 4.8E-14 1E-18 110.6 11.1 79 19-100 4-82 (243)
33 KOG4212 RNA-binding protein hn 99.5 1.4E-13 3.1E-18 114.8 12.8 80 19-98 43-123 (608)
34 TIGR01622 SF-CC1 splicing fact 99.5 6.4E-14 1.4E-18 121.4 11.2 80 18-98 87-167 (457)
35 KOG0111 Cyclophilin-type pepti 99.5 9.5E-15 2.1E-19 112.2 5.2 90 17-106 7-97 (298)
36 smart00360 RRM RNA recognition 99.5 7.3E-14 1.6E-18 88.9 8.6 70 25-94 1-71 (71)
37 KOG0148 Apoptosis-promoting RN 99.5 4.4E-14 9.5E-19 111.4 8.3 86 15-100 57-143 (321)
38 COG0724 RNA-binding proteins ( 99.5 8.9E-14 1.9E-18 110.5 10.0 79 20-98 115-194 (306)
39 KOG0114 Predicted RNA-binding 99.5 1.1E-13 2.3E-18 94.6 8.6 81 16-98 14-94 (124)
40 cd00590 RRM RRM (RNA recogniti 99.5 2.8E-13 6E-18 87.0 10.1 74 22-95 1-74 (74)
41 KOG0148 Apoptosis-promoting RN 99.5 2.4E-13 5.3E-18 107.3 10.8 84 15-103 159-242 (321)
42 TIGR01649 hnRNP-L_PTB hnRNP-L/ 99.5 3.6E-13 7.7E-18 117.7 12.7 80 17-100 272-352 (481)
43 KOG0145 RNA-binding protein EL 99.5 1.5E-13 3.3E-18 108.0 8.8 86 17-102 38-124 (360)
44 KOG0146 RNA-binding protein ET 99.5 1.1E-13 2.3E-18 109.3 6.5 88 15-102 280-368 (371)
45 KOG0144 RNA-binding protein CU 99.5 9.8E-14 2.1E-18 115.5 6.0 87 18-104 122-211 (510)
46 KOG0116 RasGAP SH3 binding pro 99.5 1E-12 2.2E-17 111.6 12.2 82 19-101 287-369 (419)
47 KOG0144 RNA-binding protein CU 99.4 2.4E-13 5.2E-18 113.2 7.7 85 18-102 32-120 (510)
48 TIGR01649 hnRNP-L_PTB hnRNP-L/ 99.4 5.4E-13 1.2E-17 116.6 10.1 75 19-98 1-77 (481)
49 KOG0117 Heterogeneous nuclear 99.4 3E-13 6.5E-18 113.1 7.5 79 16-101 255-333 (506)
50 KOG0108 mRNA cleavage and poly 99.4 4.2E-13 9E-18 114.5 8.3 81 21-101 19-100 (435)
51 KOG0145 RNA-binding protein EL 99.4 2.1E-12 4.5E-17 101.7 10.7 83 17-99 275-358 (360)
52 KOG0127 Nucleolar protein fibr 99.4 1E-12 2.2E-17 112.3 9.1 86 16-101 288-380 (678)
53 smart00361 RRM_1 RNA recogniti 99.4 4.6E-12 1E-16 82.3 8.0 61 34-94 2-70 (70)
54 KOG0415 Predicted peptidyl pro 99.3 1.5E-12 3.2E-17 106.3 6.2 84 17-100 236-320 (479)
55 PF13893 RRM_5: RNA recognitio 99.3 6.1E-12 1.3E-16 78.0 7.6 56 37-96 1-56 (56)
56 KOG0109 RNA-binding protein LA 99.3 2.1E-12 4.5E-17 103.0 6.3 74 21-101 3-76 (346)
57 KOG0127 Nucleolar protein fibr 99.3 5.1E-12 1.1E-16 108.1 9.0 86 19-104 116-201 (678)
58 KOG0124 Polypyrimidine tract-b 99.3 1.2E-12 2.7E-17 107.2 4.6 75 20-94 113-188 (544)
59 KOG0147 Transcriptional coacti 99.3 2.9E-12 6.3E-17 109.6 6.6 84 21-104 279-363 (549)
60 KOG0131 Splicing factor 3b, su 99.3 1.6E-11 3.6E-16 91.9 7.1 90 12-101 88-179 (203)
61 KOG0109 RNA-binding protein LA 99.3 1.1E-11 2.4E-16 98.9 6.2 82 16-104 74-155 (346)
62 KOG4206 Spliceosomal protein s 99.2 6.4E-11 1.4E-15 91.5 8.7 85 16-102 5-93 (221)
63 KOG0123 Polyadenylate-binding 99.2 8.9E-11 1.9E-15 99.1 10.2 78 22-101 78-155 (369)
64 TIGR01642 U2AF_lg U2 snRNP aux 99.2 6.9E-11 1.5E-15 103.8 9.3 75 17-97 172-258 (509)
65 KOG0146 RNA-binding protein ET 99.2 6.7E-11 1.5E-15 93.6 7.0 89 14-102 13-104 (371)
66 KOG4212 RNA-binding protein hn 99.2 8.5E-11 1.8E-15 98.5 7.6 78 15-96 531-608 (608)
67 KOG4205 RNA-binding protein mu 99.1 5.3E-11 1.2E-15 97.7 5.6 82 19-101 5-87 (311)
68 KOG4661 Hsp27-ERE-TATA-binding 99.1 1.6E-10 3.5E-15 99.6 8.1 80 20-99 405-485 (940)
69 KOG4208 Nucleolar RNA-binding 99.1 4.4E-10 9.5E-15 85.8 8.5 85 15-99 44-130 (214)
70 KOG4205 RNA-binding protein mu 99.1 2.7E-10 5.8E-15 93.7 7.3 88 18-106 95-183 (311)
71 KOG0132 RNA polymerase II C-te 99.1 3.2E-10 6.9E-15 100.6 8.1 78 20-102 421-498 (894)
72 PF13865 FoP_duplication: C-te 99.1 6.2E-10 1.3E-14 72.9 6.8 20 165-184 37-56 (74)
73 KOG0124 Polypyrimidine tract-b 99.1 6.4E-10 1.4E-14 91.5 8.1 81 19-99 209-290 (544)
74 KOG0110 RNA-binding protein (R 99.0 1.1E-09 2.4E-14 96.4 8.0 78 20-97 515-596 (725)
75 KOG0153 Predicted RNA-binding 99.0 1.3E-09 2.9E-14 88.9 7.7 82 12-98 220-302 (377)
76 KOG0123 Polyadenylate-binding 99.0 1.9E-09 4.1E-14 91.1 8.4 73 21-98 2-74 (369)
77 KOG4454 RNA binding protein (R 99.0 3.3E-10 7.1E-15 87.3 2.6 82 16-98 5-86 (267)
78 KOG0110 RNA-binding protein (R 98.9 7.7E-10 1.7E-14 97.3 4.8 85 16-100 609-694 (725)
79 KOG1995 Conserved Zn-finger pr 98.9 6.1E-09 1.3E-13 85.5 9.1 86 16-101 62-156 (351)
80 KOG1548 Transcription elongati 98.9 5.4E-09 1.2E-13 85.4 8.4 83 17-99 131-221 (382)
81 KOG1457 RNA binding protein (c 98.9 1.4E-08 3.1E-13 78.6 10.2 87 18-104 32-123 (284)
82 KOG4209 Splicing factor RNPS1, 98.9 4.6E-09 9.9E-14 83.3 7.5 86 15-101 96-182 (231)
83 KOG0106 Alternative splicing f 98.9 1.6E-09 3.5E-14 84.3 4.0 71 21-98 2-72 (216)
84 PF04059 RRM_2: RNA recognitio 98.8 1.1E-07 2.4E-12 65.3 9.3 78 21-98 2-86 (97)
85 KOG0226 RNA-binding proteins [ 98.7 1.1E-08 2.5E-13 80.4 4.7 82 17-98 187-269 (290)
86 KOG4660 Protein Mei2, essentia 98.6 3.4E-08 7.3E-13 85.1 4.4 71 18-92 73-143 (549)
87 KOG4211 Splicing factor hnRNP- 98.6 2.3E-07 4.9E-12 79.1 8.3 77 17-96 7-83 (510)
88 KOG4849 mRNA cleavage factor I 98.6 9.9E-08 2.1E-12 78.3 5.1 77 19-95 79-158 (498)
89 KOG0120 Splicing factor U2AF, 98.5 1.5E-07 3.2E-12 81.6 5.3 90 12-101 281-371 (500)
90 KOG1190 Polypyrimidine tract-b 98.5 1.4E-06 3.1E-11 72.9 10.7 81 20-104 297-378 (492)
91 PF11608 Limkain-b1: Limkain b 98.4 1.5E-06 3.2E-11 57.6 7.5 70 21-99 3-77 (90)
92 PF08777 RRM_3: RNA binding mo 98.4 9.8E-07 2.1E-11 61.7 6.2 72 20-96 1-77 (105)
93 KOG0151 Predicted splicing reg 98.4 7.1E-07 1.5E-11 79.1 6.4 81 18-98 172-256 (877)
94 KOG4211 Splicing factor hnRNP- 98.3 2E-06 4.2E-11 73.5 7.9 78 18-96 101-179 (510)
95 KOG0106 Alternative splicing f 98.2 8.6E-07 1.9E-11 69.2 3.1 71 16-93 95-165 (216)
96 KOG1457 RNA binding protein (c 98.2 1.7E-06 3.7E-11 67.2 4.3 70 15-87 205-274 (284)
97 KOG4206 Spliceosomal protein s 98.2 7.4E-06 1.6E-10 63.7 7.7 80 14-97 140-220 (221)
98 KOG0147 Transcriptional coacti 98.1 1.2E-06 2.7E-11 75.6 2.6 79 19-98 178-257 (549)
99 KOG4210 Nuclear localization s 98.1 3.1E-06 6.6E-11 69.3 4.6 82 17-99 181-264 (285)
100 KOG0105 Alternative splicing f 98.0 3.6E-05 7.8E-10 58.4 8.1 76 14-95 109-186 (241)
101 KOG4307 RNA binding protein RB 97.9 4.5E-05 9.7E-10 67.9 8.1 75 21-95 868-943 (944)
102 COG5175 MOT2 Transcriptional r 97.9 2.8E-05 6.1E-10 63.9 6.3 79 20-98 114-202 (480)
103 KOG1456 Heterogeneous nuclear 97.9 0.00012 2.6E-09 61.1 9.9 85 15-103 282-367 (494)
104 KOG1365 RNA-binding protein Fu 97.8 5E-05 1.1E-09 63.4 6.0 83 14-96 274-359 (508)
105 KOG1855 Predicted RNA-binding 97.7 0.0002 4.3E-09 60.6 8.9 67 19-85 230-310 (484)
106 KOG2314 Translation initiation 97.7 0.00014 3E-09 63.5 8.0 79 18-96 56-141 (698)
107 KOG1190 Polypyrimidine tract-b 97.7 0.00013 2.7E-09 61.5 7.2 78 18-98 412-490 (492)
108 PF14605 Nup35_RRM_2: Nup53/35 97.7 0.00012 2.7E-09 44.6 5.2 52 21-78 2-53 (53)
109 KOG1365 RNA-binding protein Fu 97.7 6.3E-05 1.4E-09 62.8 5.0 74 19-93 160-237 (508)
110 KOG2202 U2 snRNP splicing fact 97.6 4.1E-05 8.9E-10 60.7 2.1 60 37-96 85-145 (260)
111 PF13865 FoP_duplication: C-te 97.5 0.00043 9.2E-09 45.3 5.9 18 168-185 55-72 (74)
112 KOG1456 Heterogeneous nuclear 97.5 0.0062 1.3E-07 51.1 13.7 82 16-101 116-201 (494)
113 KOG0129 Predicted RNA-binding 97.5 0.00047 1E-08 59.6 7.3 67 14-80 364-432 (520)
114 KOG3152 TBP-binding protein, a 97.4 0.00015 3.3E-09 57.5 3.9 72 19-90 73-157 (278)
115 KOG1548 Transcription elongati 97.4 0.00073 1.6E-08 55.9 7.8 85 14-101 259-354 (382)
116 PF08952 DUF1866: Domain of un 97.4 0.0011 2.3E-08 48.7 7.3 58 36-101 52-109 (146)
117 KOG0128 RNA-binding protein SA 97.3 0.00019 4.1E-09 65.2 3.2 81 18-98 734-814 (881)
118 KOG2416 Acinus (induces apopto 97.3 0.00026 5.6E-09 62.2 3.9 78 15-97 439-520 (718)
119 KOG0112 Large RNA-binding prot 97.2 0.00071 1.5E-08 62.0 6.1 81 16-101 451-533 (975)
120 KOG0120 Splicing factor U2AF, 97.2 0.0012 2.7E-08 57.6 7.0 62 37-98 426-491 (500)
121 KOG0129 Predicted RNA-binding 97.2 0.002 4.2E-08 55.9 7.9 64 18-82 257-327 (520)
122 PF10309 DUF2414: Protein of u 97.0 0.0051 1.1E-07 38.6 6.9 55 20-81 5-62 (62)
123 PF08675 RNA_bind: RNA binding 97.0 0.0061 1.3E-07 40.5 7.4 59 16-82 5-63 (87)
124 PF05172 Nup35_RRM: Nup53/35/4 97.0 0.0031 6.7E-08 43.6 6.0 77 19-97 5-90 (100)
125 KOG4676 Splicing factor, argin 96.9 0.0019 4.2E-08 54.2 5.8 76 21-97 8-87 (479)
126 KOG4307 RNA binding protein RB 96.8 0.001 2.2E-08 59.6 3.2 82 15-96 429-511 (944)
127 KOG1996 mRNA splicing factor [ 96.8 0.0056 1.2E-07 49.8 6.8 63 35-97 301-365 (378)
128 PRK11634 ATP-dependent RNA hel 96.7 0.046 9.9E-07 49.8 13.5 69 21-97 487-561 (629)
129 KOG0115 RNA-binding protein p5 96.5 0.0038 8.3E-08 49.7 4.4 63 21-83 32-94 (275)
130 KOG0128 RNA-binding protein SA 96.4 0.00015 3.2E-09 65.9 -4.4 67 21-87 668-735 (881)
131 PF03880 DbpA: DbpA RNA bindin 96.4 0.025 5.3E-07 36.8 7.0 67 22-96 2-74 (74)
132 KOG2068 MOT2 transcription fac 96.4 0.0012 2.5E-08 54.5 0.7 79 21-99 78-163 (327)
133 KOG2591 c-Mpl binding protein, 96.3 0.0073 1.6E-07 53.0 5.1 75 15-95 170-248 (684)
134 KOG2193 IGF-II mRNA-binding pr 96.1 0.0059 1.3E-07 52.0 3.7 73 21-99 2-76 (584)
135 PF03467 Smg4_UPF3: Smg-4/UPF3 96.1 0.0092 2E-07 45.5 4.3 81 18-98 5-97 (176)
136 PF11767 SET_assoc: Histone ly 95.4 0.054 1.2E-06 34.5 5.2 55 31-93 11-65 (66)
137 PF15023 DUF4523: Protein of u 95.3 0.16 3.6E-06 37.2 7.9 73 16-95 82-158 (166)
138 PF07576 BRAP2: BRCA1-associat 95.1 0.4 8.6E-06 33.7 9.2 69 19-88 11-81 (110)
139 KOG0112 Large RNA-binding prot 95.0 0.0057 1.2E-07 56.3 -0.4 81 16-96 368-448 (975)
140 KOG4660 Protein Mei2, essentia 95.0 0.046 1E-06 48.0 5.1 79 19-97 387-471 (549)
141 KOG2253 U1 snRNP complex, subu 94.9 0.025 5.5E-07 50.6 3.4 72 16-95 36-107 (668)
142 PF04847 Calcipressin: Calcipr 94.4 0.13 2.9E-06 39.5 5.8 60 34-98 9-70 (184)
143 KOG2135 Proteins containing th 93.7 0.065 1.4E-06 46.3 3.3 74 20-99 372-446 (526)
144 KOG4210 Nuclear localization s 93.3 0.044 9.5E-07 45.0 1.6 79 18-96 86-165 (285)
145 KOG2318 Uncharacterized conser 91.8 0.81 1.7E-05 40.8 7.4 79 17-95 171-302 (650)
146 KOG4285 Mitotic phosphoprotein 91.5 1.1 2.4E-05 36.9 7.4 63 27-96 204-267 (350)
147 KOG0804 Cytoplasmic Zn-finger 91.4 1.3 2.8E-05 38.4 8.0 68 20-88 74-142 (493)
148 KOG4574 RNA-binding protein (c 90.9 0.22 4.8E-06 46.1 3.2 74 24-102 302-377 (1007)
149 KOG3973 Uncharacterized conser 88.6 1.4 3E-05 37.1 5.8 6 156-161 376-381 (465)
150 KOG2193 IGF-II mRNA-binding pr 82.5 0.079 1.7E-06 45.3 -4.1 78 20-99 80-157 (584)
151 KOG4410 5-formyltetrahydrofola 80.7 7.8 0.00017 31.9 6.7 46 21-71 331-377 (396)
152 KOG4676 Splicing factor, argin 76.8 0.28 6E-06 41.7 -2.7 72 21-96 152-223 (479)
153 KOG4365 Uncharacterized conser 76.5 0.4 8.7E-06 41.3 -1.8 77 21-98 4-81 (572)
154 PF07530 PRE_C2HC: Associated 76.2 7.1 0.00015 24.8 4.3 61 35-98 2-64 (68)
155 KOG4483 Uncharacterized conser 75.9 6.9 0.00015 33.6 5.3 58 16-79 387-445 (528)
156 smart00596 PRE_C2HC PRE_C2HC d 75.2 6.6 0.00014 25.1 3.9 61 35-98 2-64 (69)
157 PF10567 Nab6_mRNP_bdg: RNA-re 75.0 8.5 0.00019 31.7 5.4 79 19-97 14-106 (309)
158 KOG4454 RNA binding protein (R 71.9 0.93 2E-05 35.8 -0.7 75 18-92 78-156 (267)
159 KOG4019 Calcineurin-mediated s 69.7 4 8.8E-05 31.2 2.3 76 19-99 9-90 (193)
160 KOG3262 H/ACA small nucleolar 69.0 18 0.00039 27.8 5.6 7 175-181 54-60 (215)
161 PF15513 DUF4651: Domain of un 68.0 16 0.00035 22.8 4.4 35 35-69 9-43 (62)
162 COG5638 Uncharacterized conser 66.7 26 0.00056 30.4 6.7 84 13-96 139-295 (622)
163 KOG2295 C2H2 Zn-finger protein 65.7 0.78 1.7E-05 40.7 -2.5 74 16-89 227-301 (648)
164 PRK11901 hypothetical protein; 63.4 36 0.00077 28.6 6.8 61 18-83 243-306 (327)
165 PF03468 XS: XS domain; Inter 62.7 18 0.00038 25.6 4.4 44 33-78 30-74 (116)
166 KOG1295 Nonsense-mediated deca 61.8 8.4 0.00018 32.8 3.0 68 19-86 6-77 (376)
167 PF02714 DUF221: Domain of unk 60.3 12 0.00027 30.8 3.8 34 64-99 1-34 (325)
168 COG0724 RNA-binding proteins ( 60.0 12 0.00025 28.9 3.5 62 15-76 220-282 (306)
169 PRK10590 ATP-dependent RNA hel 57.8 74 0.0016 27.8 8.3 7 62-68 343-349 (456)
170 PRK10629 EnvZ/OmpR regulon mod 52.8 84 0.0018 22.6 8.1 72 19-97 34-109 (127)
171 KOG4008 rRNA processing protei 51.5 15 0.00032 29.4 2.6 36 15-50 35-70 (261)
172 COG4907 Predicted membrane pro 47.5 20 0.00043 31.6 3.0 14 72-85 526-539 (595)
173 PF07292 NID: Nmi/IFP 35 domai 47.0 12 0.00026 25.2 1.3 24 18-41 50-73 (88)
174 PF09707 Cas_Cas2CT1978: CRISP 44.9 56 0.0012 21.8 4.3 50 18-69 23-72 (86)
175 KOG4213 RNA-binding protein La 43.6 67 0.0014 24.7 5.0 49 32-80 118-169 (205)
176 PF15502 MPLKIP: M-phase-speci 42.9 42 0.00091 24.8 3.8 13 176-188 115-127 (151)
177 PF14893 PNMA: PNMA 41.0 31 0.00067 29.1 3.2 27 16-42 14-40 (331)
178 KOG1784 Small Nuclear ribonucl 40.5 14 0.0003 24.9 0.8 24 169-192 73-96 (96)
179 PRK06958 single-stranded DNA-b 39.3 1.4E+02 0.003 23.0 6.2 13 20-32 5-17 (182)
180 COG4907 Predicted membrane pro 38.8 32 0.0007 30.3 3.0 8 75-82 526-533 (595)
181 PF00403 HMA: Heavy-metal-asso 38.8 86 0.0019 18.6 5.9 54 22-80 1-58 (62)
182 PF03791 KNOX2: KNOX2 domain ; 37.4 14 0.00031 22.2 0.5 10 173-182 7-16 (52)
183 PRK11230 glycolate oxidase sub 37.1 1.4E+02 0.0031 26.6 6.9 49 34-82 203-255 (499)
184 PRK11634 ATP-dependent RNA hel 36.6 82 0.0018 29.0 5.4 9 71-79 501-509 (629)
185 PRK10590 ATP-dependent RNA hel 36.2 91 0.002 27.2 5.5 10 65-74 317-326 (456)
186 PF11823 DUF3343: Protein of u 35.3 55 0.0012 20.7 3.1 26 63-88 3-28 (73)
187 PRK11558 putative ssRNA endonu 34.8 80 0.0017 21.6 3.8 51 18-70 25-75 (97)
188 COG0030 KsgA Dimethyladenosine 33.3 52 0.0011 26.7 3.3 35 20-54 95-129 (259)
189 COG3254 Uncharacterized conser 33.3 1.7E+02 0.0036 20.4 5.4 40 35-77 27-67 (105)
190 KOG2891 Surface glycoprotein [ 32.2 65 0.0014 26.6 3.6 36 19-54 148-195 (445)
191 PRK10905 cell division protein 32.1 2.6E+02 0.0056 23.6 7.1 59 20-83 247-308 (328)
192 KOG0156 Cytochrome P450 CYP2 s 32.1 1.2E+02 0.0026 27.0 5.6 59 24-91 36-97 (489)
193 COG5193 LHP1 La protein, small 30.4 23 0.00049 30.6 0.7 59 21-79 175-244 (438)
194 KOG0226 RNA-binding proteins [ 28.7 28 0.0006 28.3 0.9 76 18-93 94-172 (290)
195 COG5236 Uncharacterized conser 28.6 3.8E+02 0.0082 23.0 9.0 50 35-91 265-314 (493)
196 KOG0116 RasGAP SH3 binding pro 26.9 1.2E+02 0.0027 26.4 4.6 12 70-81 301-312 (419)
197 KOG2187 tRNA uracil-5-methyltr 25.6 92 0.002 28.0 3.6 39 61-99 63-101 (534)
198 cd00027 BRCT Breast Cancer Sup 25.1 1.3E+02 0.0027 17.4 3.4 26 21-46 2-27 (72)
199 PF11430 EGL-1: Programmed cel 24.1 26 0.00056 16.8 0.0 9 171-179 12-20 (21)
200 TIGR01873 cas_CT1978 CRISPR-as 24.0 68 0.0015 21.5 2.0 51 18-70 23-74 (87)
201 PF11411 DNA_ligase_IV: DNA li 23.8 62 0.0014 17.9 1.5 16 30-45 19-34 (36)
202 COG2608 CopZ Copper chaperone 23.1 2E+02 0.0044 18.0 5.2 45 21-70 4-48 (71)
203 PF10775 ATP_sub_h: ATP syntha 22.0 96 0.0021 19.7 2.3 21 163-183 44-64 (67)
204 PLN02805 D-lactate dehydrogena 21.5 3.4E+02 0.0074 24.6 6.6 50 33-82 279-332 (555)
205 PF05189 RTC_insert: RNA 3'-te 21.3 1.8E+02 0.004 19.6 3.9 48 22-69 12-65 (103)
206 PF03439 Spt5-NGN: Early trans 21.2 1.1E+02 0.0024 20.0 2.7 25 60-84 43-67 (84)
207 TIGR00387 glcD glycolate oxida 21.1 3.4E+02 0.0073 23.4 6.3 48 35-82 147-198 (413)
208 PF12238 MSA-2c: Merozoite sur 21.0 67 0.0015 25.2 1.8 25 167-191 76-101 (205)
209 PHA01632 hypothetical protein 20.5 1.2E+02 0.0025 18.6 2.3 19 24-42 20-38 (64)
No 1
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=99.89 E-value=9.7e-22 Score=145.42 Aligned_cols=86 Identities=26% Similarity=0.482 Sum_probs=80.5
Q ss_pred CCCCCCCCEEEEcCCCCCCCHHHHHHHhhhCCCeEEEEEEeCC-CCCcceEEEEEEcCHHHHHHHHHHhCCCccCCceEE
Q 029496 14 SSSIESGTKLYISNLEYGVSNEDIKELFSEVGELKRCSVHFDR-SGRSKGTAEVVLTRRADAIAAVKRYNNVQLDGKPMK 92 (192)
Q Consensus 14 ~~~~~~~~~l~V~nL~~~~te~~L~~~f~~~G~i~~v~i~~~~-tg~~~g~afV~f~~~~~a~~Ai~~l~~~~l~g~~i~ 92 (192)
.+.....++|||+|||++++|++|+++|.+||.|.+|.|+.++ ++++++||||+|.+.++|++||+.|++..|+++.|+
T Consensus 28 ~~~~~~~~~lfVgnL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kGfaFV~F~~~e~A~~Al~~lng~~i~Gr~l~ 107 (144)
T PLN03134 28 GSLRLMSTKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKELNGRHIR 107 (144)
T ss_pred ccccCCCCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEE
Confidence 3446677899999999999999999999999999999999998 999999999999999999999999999999999999
Q ss_pred EEEeecC
Q 029496 93 IEIIGTN 99 (192)
Q Consensus 93 V~~~~~~ 99 (192)
|+++..+
T Consensus 108 V~~a~~~ 114 (144)
T PLN03134 108 VNPANDR 114 (144)
T ss_pred EEeCCcC
Confidence 9998753
No 2
>KOG0533 consensus RRM motif-containing protein [RNA processing and modification]
Probab=99.87 E-value=7.1e-21 Score=150.22 Aligned_cols=163 Identities=41% Similarity=0.594 Sum_probs=110.2
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHhhhCCCeEEEEEEeCCCCCcceEEEEEEcCHHHHHHHHHHhCCCccCCceEEEEE
Q 029496 16 SIESGTKLYISNLEYGVSNEDIKELFSEVGELKRCSVHFDRSGRSKGTAEVVLTRRADAIAAVKRYNNVQLDGKPMKIEI 95 (192)
Q Consensus 16 ~~~~~~~l~V~nL~~~~te~~L~~~f~~~G~i~~v~i~~~~tg~~~g~afV~f~~~~~a~~Ai~~l~~~~l~g~~i~V~~ 95 (192)
.....++|+|.|||+.|+++||++||.+|+.+..+.|.++++|.+.|+|-|.|...++|.+|++.|+++.|+|+.|++.+
T Consensus 79 ~~~~~~~v~v~NL~~~V~~~Dl~eLF~~~~~~~r~~vhy~~~G~s~Gta~v~~~r~~DA~~avk~~~gv~ldG~~mk~~~ 158 (243)
T KOG0533|consen 79 NETRSTKVNVSNLPYGVIDADLKELFAEFGELKRVAVHYDRAGRSLGTADVSFNRRDDAERAVKKYNGVALDGRPMKIEI 158 (243)
T ss_pred cCCCcceeeeecCCcCcchHHHHHHHHHhccceEEeeccCCCCCCCccceeeecchHhHHHHHHHhcCcccCCceeeeEE
Confidence 34445899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eecCCCCCCCCCCcccCCCC-cccCCCCcCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHhHh
Q 029496 96 IGTNIGPPAAVLPITNVMYG-NEIGMTRSRLRMGGAIPIERPRRGRGGLGGRGGRGGARGGRGRGRGQGAKPNLSVEDLD 174 (192)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~gg~~~~~~~~~~rggggg~gg~gg~~~g~~rg~~r~~~~~~~~~~lD 174 (192)
..+.......+.......+. +....+.......+ ..+......+.+..++....++...|..++++|+||||
T Consensus 159 i~~~~~~~r~~~~~~~~~r~~~~~r~~~~~~~~~~-------~~~~~~~~~g~~~~~~~~~~~~~~~R~~k~~~tae~lD 231 (243)
T KOG0533|consen 159 ISSPSQSKRLPVGATKPLRAPNSNRTPARVSRGDK-------ASGASKRRRGAGRPGGKFKGGKRGKREAKPEKTAEELD 231 (243)
T ss_pred ecCccccccccccccccccccccccccccccCCCC-------ccCcccccCCCccccccccCCCCCCcCCcCcccHHHHH
Confidence 88766654433221111000 00000000000000 00000000000000112222334456688899999999
Q ss_pred HHHHHHHHHhhh
Q 029496 175 ADLEKYHIEAKQ 186 (192)
Q Consensus 175 ~el~~~~~~~~~ 186 (192)
+||++||++ |+
T Consensus 232 aeld~Y~~~-~~ 242 (243)
T KOG0533|consen 232 AELDAYMAK-MK 242 (243)
T ss_pred HHHHHHHhh-cc
Confidence 999999998 54
No 3
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.79 E-value=5.3e-18 Score=141.81 Aligned_cols=84 Identities=24% Similarity=0.492 Sum_probs=77.0
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHhhhCCCeEEEEEEeCC-CCCcceEEEEEEcCHHHHHHHHHHhCCCccCC--ceEEEE
Q 029496 18 ESGTKLYISNLEYGVSNEDIKELFSEVGELKRCSVHFDR-SGRSKGTAEVVLTRRADAIAAVKRYNNVQLDG--KPMKIE 94 (192)
Q Consensus 18 ~~~~~l~V~nL~~~~te~~L~~~f~~~G~i~~v~i~~~~-tg~~~g~afV~f~~~~~a~~Ai~~l~~~~l~g--~~i~V~ 94 (192)
...++|||+|||+.+||++|+++|++||.|+.+.|+.++ ++++++||||+|.+.++|++||+.|++..|.+ ++|+|.
T Consensus 191 ~~~~~lfV~nLp~~vtee~L~~~F~~fG~V~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~~~g~~~~l~V~ 270 (346)
T TIGR01659 191 IKDTNLYVTNLPRTITDDQLDTIFGKYGQIVQKNILRDKLTGTPRGVAFVRFNKREEAQEAISALNNVIPEGGSQPLTVR 270 (346)
T ss_pred cccceeEEeCCCCcccHHHHHHHHHhcCCEEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCccCCCceeEEEE
Confidence 356789999999999999999999999999999999998 99999999999999999999999999999876 688888
Q ss_pred EeecCCC
Q 029496 95 IIGTNIG 101 (192)
Q Consensus 95 ~~~~~~~ 101 (192)
++.....
T Consensus 271 ~a~~~~~ 277 (346)
T TIGR01659 271 LAEEHGK 277 (346)
T ss_pred ECCcccc
Confidence 8876543
No 4
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=99.75 E-value=1.3e-17 Score=124.71 Aligned_cols=79 Identities=19% Similarity=0.318 Sum_probs=71.2
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHhhhCCCeEEEEEEeCCCCCcceEEEEEEcCHHHHHHHHHHhCCCccCCceEEEEEee
Q 029496 18 ESGTKLYISNLEYGVSNEDIKELFSEVGELKRCSVHFDRSGRSKGTAEVVLTRRADAIAAVKRYNNVQLDGKPMKIEIIG 97 (192)
Q Consensus 18 ~~~~~l~V~nL~~~~te~~L~~~f~~~G~i~~v~i~~~~tg~~~g~afV~f~~~~~a~~Ai~~l~~~~l~g~~i~V~~~~ 97 (192)
...++|||+|||.++.+.+|+++|-+||.|..|.|..-+ ....||||+|+++.+|+.||..-++..+++..|+|+++.
T Consensus 4 r~~~~iyvGNLP~diRekeieDlFyKyg~i~~ieLK~r~--g~ppfafVeFEd~RDAeDAiygRdGYdydg~rLRVEfpr 81 (241)
T KOG0105|consen 4 RNSRRIYVGNLPGDIREKEIEDLFYKYGRIREIELKNRP--GPPPFAFVEFEDPRDAEDAIYGRDGYDYDGCRLRVEFPR 81 (241)
T ss_pred cccceEEecCCCcchhhccHHHHHhhhcceEEEEeccCC--CCCCeeEEEecCccchhhhhhcccccccCcceEEEEecc
Confidence 457899999999999999999999999999999886443 235799999999999999999999999999999999986
Q ss_pred c
Q 029496 98 T 98 (192)
Q Consensus 98 ~ 98 (192)
.
T Consensus 82 g 82 (241)
T KOG0105|consen 82 G 82 (241)
T ss_pred C
Confidence 4
No 5
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.75 E-value=1.4e-17 Score=139.52 Aligned_cols=82 Identities=18% Similarity=0.299 Sum_probs=77.8
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHhhhCCCeEEEEEEeCC-CCCcceEEEEEEcCHHHHHHHHHHhCCCccCCceEEEEEee
Q 029496 19 SGTKLYISNLEYGVSNEDIKELFSEVGELKRCSVHFDR-SGRSKGTAEVVLTRRADAIAAVKRYNNVQLDGKPMKIEIIG 97 (192)
Q Consensus 19 ~~~~l~V~nL~~~~te~~L~~~f~~~G~i~~v~i~~~~-tg~~~g~afV~f~~~~~a~~Ai~~l~~~~l~g~~i~V~~~~ 97 (192)
.+.+|||+|||+.+++++|+++|++||.|.+++|+.|+ ++.++|||||+|.+.++|.+||..||+..|+|+.|+|.++.
T Consensus 268 ~~~~lfV~NL~~~~~e~~L~~~F~~fG~v~~v~i~~d~~t~~skG~aFV~F~~~~~A~~Ai~~lnG~~~~gr~i~V~~~~ 347 (352)
T TIGR01661 268 AGYCIFVYNLSPDTDETVLWQLFGPFGAVQNVKIIRDLTTNQCKGYGFVSMTNYDEAAMAILSLNGYTLGNRVLQVSFKT 347 (352)
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeEcCCCCCccceEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEcc
Confidence 34579999999999999999999999999999999999 99999999999999999999999999999999999999998
Q ss_pred cCC
Q 029496 98 TNI 100 (192)
Q Consensus 98 ~~~ 100 (192)
.+.
T Consensus 348 ~~~ 350 (352)
T TIGR01661 348 NKA 350 (352)
T ss_pred CCC
Confidence 654
No 6
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.74 E-value=2.1e-17 Score=138.24 Aligned_cols=83 Identities=27% Similarity=0.434 Sum_probs=78.3
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHhhhCCCeEEEEEEeCC-CCCcceEEEEEEcCHHHHHHHHHHhCCCccCCceEEEE
Q 029496 16 SIESGTKLYISNLEYGVSNEDIKELFSEVGELKRCSVHFDR-SGRSKGTAEVVLTRRADAIAAVKRYNNVQLDGKPMKIE 94 (192)
Q Consensus 16 ~~~~~~~l~V~nL~~~~te~~L~~~f~~~G~i~~v~i~~~~-tg~~~g~afV~f~~~~~a~~Ai~~l~~~~l~g~~i~V~ 94 (192)
.....++|||+|||+++|+++|+++|++||.|++|+|+.|+ ++++++||||+|.++++|++||+.|++..|.+++|+|.
T Consensus 103 ~~~~~~~LfVgnLp~~~te~~L~~lF~~~G~V~~v~i~~d~~tg~srGyaFVeF~~~e~A~~Ai~~LnG~~l~gr~i~V~ 182 (346)
T TIGR01659 103 TNNSGTNLIVNYLPQDMTDRELYALFRTIGPINTCRIMRDYKTGYSFGYAFVDFGSEADSQRAIKNLNGITVRNKRLKVS 182 (346)
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccCcEEEEEEccHHHHHHHHHHcCCCccCCceeeee
Confidence 44567899999999999999999999999999999999998 99999999999999999999999999999999999999
Q ss_pred Eeec
Q 029496 95 IIGT 98 (192)
Q Consensus 95 ~~~~ 98 (192)
++++
T Consensus 183 ~a~p 186 (346)
T TIGR01659 183 YARP 186 (346)
T ss_pred cccc
Confidence 8754
No 7
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.73 E-value=2.9e-17 Score=137.65 Aligned_cols=82 Identities=30% Similarity=0.495 Sum_probs=77.9
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHhhhCCCeEEEEEEeCC-CCCcceEEEEEEcCHHHHHHHHHHhCCCccCCceEEEEEee
Q 029496 19 SGTKLYISNLEYGVSNEDIKELFSEVGELKRCSVHFDR-SGRSKGTAEVVLTRRADAIAAVKRYNNVQLDGKPMKIEIIG 97 (192)
Q Consensus 19 ~~~~l~V~nL~~~~te~~L~~~f~~~G~i~~v~i~~~~-tg~~~g~afV~f~~~~~a~~Ai~~l~~~~l~g~~i~V~~~~ 97 (192)
+.++|||+|||..+++++|+++|.+||+|.+|+|+.++ +++++|||||+|.+.++|++||+.|++..|.|+.|.|+++.
T Consensus 2 ~~~~l~V~nLp~~~~e~~l~~~F~~~G~i~~v~i~~d~~~g~s~g~afV~f~~~~~A~~Ai~~l~g~~l~g~~i~v~~a~ 81 (352)
T TIGR01661 2 SKTNLIVNYLPQTMTQEEIRSLFTSIGEIESCKLVRDKVTGQSLGYGFVNYVRPEDAEKAVNSLNGLRLQNKTIKVSYAR 81 (352)
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHccCCEEEEEEEEcCCCCccceEEEEEECcHHHHHHHHhhcccEEECCeeEEEEeec
Confidence 56899999999999999999999999999999999998 99999999999999999999999999999999999999986
Q ss_pred cCC
Q 029496 98 TNI 100 (192)
Q Consensus 98 ~~~ 100 (192)
+..
T Consensus 82 ~~~ 84 (352)
T TIGR01661 82 PSS 84 (352)
T ss_pred ccc
Confidence 544
No 8
>KOG0113 consensus U1 small nuclear ribonucleoprotein (RRM superfamily) [RNA processing and modification]
Probab=99.73 E-value=1.4e-16 Score=126.79 Aligned_cols=96 Identities=21% Similarity=0.330 Sum_probs=88.3
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHhhhCCCeEEEEEEeCC-CCCcceEEEEEEcCHHHHHHHHHHhCCCccCCceEEEE
Q 029496 16 SIESGTKLYISNLEYGVSNEDIKELFSEVGELKRCSVHFDR-SGRSKGTAEVVLTRRADAIAAVKRYNNVQLDGKPMKIE 94 (192)
Q Consensus 16 ~~~~~~~l~V~nL~~~~te~~L~~~f~~~G~i~~v~i~~~~-tg~~~g~afV~f~~~~~a~~Ai~~l~~~~l~g~~i~V~ 94 (192)
.-++-+||||+-|+++++|..|+..|+.||.|+.|.|+.|+ |++++|||||+|+++.++++|.+..++..|+++.|.|.
T Consensus 97 ~gDPy~TLFv~RLnydT~EskLrreF~~YG~IkrirlV~d~vTgkskGYAFIeye~erdm~~AYK~adG~~Idgrri~VD 176 (335)
T KOG0113|consen 97 IGDPYKTLFVARLNYDTSESKLRREFEKYGPIKRIRLVRDKVTGKSKGYAFIEYEHERDMKAAYKDADGIKIDGRRILVD 176 (335)
T ss_pred cCCccceeeeeeccccccHHHHHHHHHhcCcceeEEEeeecccCCccceEEEEeccHHHHHHHHHhccCceecCcEEEEE
Confidence 34788999999999999999999999999999999999999 99999999999999999999999999999999999999
Q ss_pred EeecCCCCCCCCCCccc
Q 029496 95 IIGTNIGPPAAVLPITN 111 (192)
Q Consensus 95 ~~~~~~~~~~~~~~~~~ 111 (192)
+-...+.....|.....
T Consensus 177 vERgRTvkgW~PRRLGG 193 (335)
T KOG0113|consen 177 VERGRTVKGWLPRRLGG 193 (335)
T ss_pred ecccccccccccccccC
Confidence 99888887776544433
No 9
>KOG0107 consensus Alternative splicing factor SRp20/9G8 (RRM superfamily) [RNA processing and modification]
Probab=99.72 E-value=1e-16 Score=118.90 Aligned_cols=80 Identities=24% Similarity=0.348 Sum_probs=73.6
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHhhhCCCeEEEEEEeCCCCCcceEEEEEEcCHHHHHHHHHHhCCCccCCceEEEEEee
Q 029496 18 ESGTKLYISNLEYGVSNEDIKELFSEVGELKRCSVHFDRSGRSKGTAEVVLTRRADAIAAVKRYNNVQLDGKPMKIEIIG 97 (192)
Q Consensus 18 ~~~~~l~V~nL~~~~te~~L~~~f~~~G~i~~v~i~~~~tg~~~g~afV~f~~~~~a~~Ai~~l~~~~l~g~~i~V~~~~ 97 (192)
.-.++|||+||+..+++.+|+.+|..||.|..|.|-.+ +.|||||+|+++.+|+.|+..|++..|.|..|+|++.+
T Consensus 8 ~~~~kVYVGnL~~~a~k~eLE~~F~~yG~lrsvWvArn----PPGfAFVEFed~RDA~DAvr~LDG~~~cG~r~rVE~S~ 83 (195)
T KOG0107|consen 8 NGNTKVYVGNLGSRATKRELERAFSKYGPLRSVWVARN----PPGFAFVEFEDPRDAEDAVRYLDGKDICGSRIRVELST 83 (195)
T ss_pred CCCceEEeccCCCCcchHHHHHHHHhcCcceeEEEeec----CCCceEEeccCcccHHHHHhhcCCccccCceEEEEeec
Confidence 45789999999999999999999999999999988765 47899999999999999999999999999999999998
Q ss_pred cCCC
Q 029496 98 TNIG 101 (192)
Q Consensus 98 ~~~~ 101 (192)
....
T Consensus 84 G~~r 87 (195)
T KOG0107|consen 84 GRPR 87 (195)
T ss_pred CCcc
Confidence 6444
No 10
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=99.72 E-value=3.9e-17 Score=105.38 Aligned_cols=70 Identities=31% Similarity=0.576 Sum_probs=67.1
Q ss_pred EEEcCCCCCCCHHHHHHHhhhCCCeEEEEEEeCCCCCcceEEEEEEcCHHHHHHHHHHhCCCccCCceEE
Q 029496 23 LYISNLEYGVSNEDIKELFSEVGELKRCSVHFDRSGRSKGTAEVVLTRRADAIAAVKRYNNVQLDGKPMK 92 (192)
Q Consensus 23 l~V~nL~~~~te~~L~~~f~~~G~i~~v~i~~~~tg~~~g~afV~f~~~~~a~~Ai~~l~~~~l~g~~i~ 92 (192)
|||+|||+++|+++|+++|++||.|..+.+..+.++..+++|||+|.+.++|++|++.|++..++++.|+
T Consensus 1 l~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~a~V~F~~~~~a~~a~~~l~g~~~~~~~ir 70 (70)
T PF00076_consen 1 LYVGNLPPDVTEEELRDFFSQFGKIESIKVMRNSSGKSKGYAFVEFESEEDAEKALEELNGKKINGRKIR 70 (70)
T ss_dssp EEEESETTTSSHHHHHHHHHTTSTEEEEEEEEETTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred cEEcCCCCcCCHHHHHHHHHHhhhcccccccccccccccceEEEEEcCHHHHHHHHHHcCCCEECccCcC
Confidence 7999999999999999999999999999999887888999999999999999999999999999999885
No 11
>KOG0121 consensus Nuclear cap-binding protein complex, subunit CBP20 (RRM superfamily) [RNA processing and modification]
Probab=99.72 E-value=1.7e-17 Score=117.17 Aligned_cols=83 Identities=28% Similarity=0.478 Sum_probs=78.0
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHhhhCCCeEEEEEEeCC-CCCcceEEEEEEcCHHHHHHHHHHhCCCccCCceEEEE
Q 029496 16 SIESGTKLYISNLEYGVSNEDIKELFSEVGELKRCSVHFDR-SGRSKGTAEVVLTRRADAIAAVKRYNNVQLDGKPMKIE 94 (192)
Q Consensus 16 ~~~~~~~l~V~nL~~~~te~~L~~~f~~~G~i~~v~i~~~~-tg~~~g~afV~f~~~~~a~~Ai~~l~~~~l~g~~i~V~ 94 (192)
....+++|||+||+..++|++|.+||+.+|+|..|.+-.|+ +..+.|||||+|.+.++|+.|++.++++.|+.++|+|.
T Consensus 32 a~r~S~tvyVgNlSfyttEEqiyELFs~cG~irriiMGLdr~kktpCGFCFVeyy~~~dA~~AlryisgtrLddr~ir~D 111 (153)
T KOG0121|consen 32 ALRKSCTVYVGNLSFYTTEEQIYELFSKCGDIRRIIMGLDRFKKTPCGFCFVEYYSRDDAEDALRYISGTRLDDRPIRID 111 (153)
T ss_pred HHhhcceEEEeeeeeeecHHHHHHHHHhccchheeEeccccCCcCccceEEEEEecchhHHHHHHHhccCcccccceeee
Confidence 34567999999999999999999999999999999999999 88899999999999999999999999999999999998
Q ss_pred Eeec
Q 029496 95 IIGT 98 (192)
Q Consensus 95 ~~~~ 98 (192)
+.-.
T Consensus 112 ~D~G 115 (153)
T KOG0121|consen 112 WDAG 115 (153)
T ss_pred cccc
Confidence 8754
No 12
>KOG0122 consensus Translation initiation factor 3, subunit g (eIF-3g) [Translation, ribosomal structure and biogenesis]
Probab=99.72 E-value=6.3e-17 Score=125.68 Aligned_cols=84 Identities=26% Similarity=0.401 Sum_probs=80.5
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHhhhCCCeEEEEEEeCC-CCCcceEEEEEEcCHHHHHHHHHHhCCCccCCceEEEE
Q 029496 16 SIESGTKLYISNLEYGVSNEDIKELFSEVGELKRCSVHFDR-SGRSKGTAEVVLTRRADAIAAVKRYNNVQLDGKPMKIE 94 (192)
Q Consensus 16 ~~~~~~~l~V~nL~~~~te~~L~~~f~~~G~i~~v~i~~~~-tg~~~g~afV~f~~~~~a~~Ai~~l~~~~l~g~~i~V~ 94 (192)
..++.++|-|.||+.+++|++|++||..||.|.+|.|..|+ ||.++|||||+|.+.++|.+||+.|++.-++.-.|+|+
T Consensus 185 ~R~D~~tvRvtNLsed~~E~dL~eLf~~fg~i~rvylardK~TG~~kGFAFVtF~sRddA~rAI~~LnG~gyd~LILrvE 264 (270)
T KOG0122|consen 185 ERDDEATVRVTNLSEDMREDDLEELFRPFGPITRVYLARDKETGLSKGFAFVTFESRDDAARAIADLNGYGYDNLILRVE 264 (270)
T ss_pred cCCccceeEEecCccccChhHHHHHhhccCccceeEEEEccccCcccceEEEEEecHHHHHHHHHHccCcccceEEEEEE
Confidence 45678899999999999999999999999999999999999 99999999999999999999999999999999999999
Q ss_pred EeecC
Q 029496 95 IIGTN 99 (192)
Q Consensus 95 ~~~~~ 99 (192)
+++++
T Consensus 265 wskP~ 269 (270)
T KOG0122|consen 265 WSKPS 269 (270)
T ss_pred ecCCC
Confidence 99874
No 13
>KOG4207 consensus Predicted splicing factor, SR protein superfamily [RNA processing and modification]
Probab=99.70 E-value=1.3e-16 Score=121.27 Aligned_cols=88 Identities=25% Similarity=0.425 Sum_probs=83.8
Q ss_pred CCCCCCCCEEEEcCCCCCCCHHHHHHHhhhCCCeEEEEEEeCC-CCCcceEEEEEEcCHHHHHHHHHHhCCCccCCceEE
Q 029496 14 SSSIESGTKLYISNLEYGVSNEDIKELFSEVGELKRCSVHFDR-SGRSKGTAEVVLTRRADAIAAVKRYNNVQLDGKPMK 92 (192)
Q Consensus 14 ~~~~~~~~~l~V~nL~~~~te~~L~~~f~~~G~i~~v~i~~~~-tg~~~g~afV~f~~~~~a~~Ai~~l~~~~l~g~~i~ 92 (192)
+++.+.-++|.|-||.+-++.++|+.+|++||.|-+|.|+.|+ |..++|||||.|....+|+.|+++|++..|+|+.|.
T Consensus 7 PPdv~gm~SLkVdNLTyRTspd~LrrvFekYG~vgDVyIPrdr~Tr~sRgFaFVrf~~k~daedA~damDG~~ldgRelr 86 (256)
T KOG4207|consen 7 PPDVEGMTSLKVDNLTYRTSPDDLRRVFEKYGRVGDVYIPRDRYTRQSRGFAFVRFHDKRDAEDALDAMDGAVLDGRELR 86 (256)
T ss_pred CCCcccceeEEecceeccCCHHHHHHHHHHhCcccceecccccccccccceeEEEeeecchHHHHHHhhcceeeccceee
Confidence 5678888999999999999999999999999999999999999 999999999999999999999999999999999999
Q ss_pred EEEeecCCC
Q 029496 93 IEIIGTNIG 101 (192)
Q Consensus 93 V~~~~~~~~ 101 (192)
|++++....
T Consensus 87 Vq~arygr~ 95 (256)
T KOG4207|consen 87 VQMARYGRP 95 (256)
T ss_pred ehhhhcCCC
Confidence 999987554
No 14
>KOG0149 consensus Predicted RNA-binding protein SEB4 (RRM superfamily) [General function prediction only]
Probab=99.67 E-value=1.3e-16 Score=123.39 Aligned_cols=79 Identities=27% Similarity=0.441 Sum_probs=72.9
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHhhhCCCeEEEEEEeCC-CCCcceEEEEEEcCHHHHHHHHHHhCCCccCCceEEEEEee
Q 029496 19 SGTKLYISNLEYGVSNEDIKELFSEVGELKRCSVHFDR-SGRSKGTAEVVLTRRADAIAAVKRYNNVQLDGKPMKIEIIG 97 (192)
Q Consensus 19 ~~~~l~V~nL~~~~te~~L~~~f~~~G~i~~v~i~~~~-tg~~~g~afV~f~~~~~a~~Ai~~l~~~~l~g~~i~V~~~~ 97 (192)
.-++|||++|+|+++.++|+++|++||+|.+..|+.|+ ++++|||+||+|.+.+.|.+|++. .+-.|+|++..+.++.
T Consensus 11 ~~TKifVggL~w~T~~~~l~~yFeqfGeI~eavvitd~~t~rskGyGfVTf~d~~aa~rAc~d-p~piIdGR~aNcnlA~ 89 (247)
T KOG0149|consen 11 TFTKIFVGGLAWETHKETLRRYFEQFGEIVEAVVITDKNTGRSKGYGFVTFRDAEAATRACKD-PNPIIDGRKANCNLAS 89 (247)
T ss_pred eEEEEEEcCcccccchHHHHHHHHHhCceEEEEEEeccCCccccceeeEEeecHHHHHHHhcC-CCCcccccccccchhh
Confidence 44799999999999999999999999999999999999 999999999999999999999974 5667999999998875
Q ss_pred c
Q 029496 98 T 98 (192)
Q Consensus 98 ~ 98 (192)
-
T Consensus 90 l 90 (247)
T KOG0149|consen 90 L 90 (247)
T ss_pred h
Confidence 4
No 15
>KOG0125 consensus Ataxin 2-binding protein (RRM superfamily) [General function prediction only]
Probab=99.67 E-value=3.2e-16 Score=126.28 Aligned_cols=92 Identities=22% Similarity=0.408 Sum_probs=81.7
Q ss_pred ccccCCCCCCCCEEEEcCCCCCCCHHHHHHHhhhCCCeEEEEEEeCCCCCcceEEEEEEcCHHHHHHHHHHhCCCccCCc
Q 029496 10 AAARSSSIESGTKLYISNLEYGVSNEDIKELFSEVGELKRCSVHFDRSGRSKGTAEVVLTRRADAIAAVKRYNNVQLDGK 89 (192)
Q Consensus 10 ~~~~~~~~~~~~~l~V~nL~~~~te~~L~~~f~~~G~i~~v~i~~~~tg~~~g~afV~f~~~~~a~~Ai~~l~~~~l~g~ 89 (192)
+....+..+..++|+|+|||+...|.||+.+|.+||.|.+|.|+.+.-| +|||+||+|++.+||++|-++||+..|.|+
T Consensus 86 ~st~s~s~~~pkRLhVSNIPFrFRdpDL~aMF~kfG~VldVEIIfNERG-SKGFGFVTmen~~dadRARa~LHgt~VEGR 164 (376)
T KOG0125|consen 86 PSTNSSSKDTPKRLHVSNIPFRFRDPDLRAMFEKFGKVLDVEIIFNERG-SKGFGFVTMENPADADRARAELHGTVVEGR 164 (376)
T ss_pred CCCcCCCCCCCceeEeecCCccccCccHHHHHHhhCceeeEEEEeccCC-CCccceEEecChhhHHHHHHHhhcceeece
Confidence 3455556677789999999999999999999999999999999988744 589999999999999999999999999999
Q ss_pred eEEEEEeecCCCC
Q 029496 90 PMKIEIIGTNIGP 102 (192)
Q Consensus 90 ~i~V~~~~~~~~~ 102 (192)
+|.|..++.....
T Consensus 165 kIEVn~ATarV~n 177 (376)
T KOG0125|consen 165 KIEVNNATARVHN 177 (376)
T ss_pred EEEEeccchhhcc
Confidence 9999998765443
No 16
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.65 E-value=4.7e-15 Score=130.64 Aligned_cols=77 Identities=26% Similarity=0.360 Sum_probs=70.7
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHhhhC--CCeEEEEEEeCCCCCcceEEEEEEcCHHHHHHHHHHhCCCccCCceEEEEE
Q 029496 18 ESGTKLYISNLEYGVSNEDIKELFSEV--GELKRCSVHFDRSGRSKGTAEVVLTRRADAIAAVKRYNNVQLDGKPMKIEI 95 (192)
Q Consensus 18 ~~~~~l~V~nL~~~~te~~L~~~f~~~--G~i~~v~i~~~~tg~~~g~afV~f~~~~~a~~Ai~~l~~~~l~g~~i~V~~ 95 (192)
...++|||+||++++++++|+++|++| |.|.+|.++ ++||||+|.+.++|++|++.||+..|+|+.|+|++
T Consensus 231 ~~~k~LfVgNL~~~~tee~L~~~F~~f~~G~I~rV~~~-------rgfAFVeF~s~e~A~kAi~~lnG~~i~Gr~I~V~~ 303 (578)
T TIGR01648 231 AKVKILYVRNLMTTTTEEIIEKSFSEFKPGKVERVKKI-------RDYAFVHFEDREDAVKAMDELNGKELEGSEIEVTL 303 (578)
T ss_pred ccccEEEEeCCCCCCCHHHHHHHHHhcCCCceEEEEee-------cCeEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 446789999999999999999999999 999999876 46999999999999999999999999999999999
Q ss_pred eecCCC
Q 029496 96 IGTNIG 101 (192)
Q Consensus 96 ~~~~~~ 101 (192)
+++...
T Consensus 304 Akp~~~ 309 (578)
T TIGR01648 304 AKPVDK 309 (578)
T ss_pred ccCCCc
Confidence 987543
No 17
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=99.64 E-value=1.6e-15 Score=98.31 Aligned_cols=70 Identities=30% Similarity=0.558 Sum_probs=64.6
Q ss_pred EEEcCCCCCCCHHHHHHHhhhCCCeEEEEEEeCCCCCcceEEEEEEcCHHHHHHHHHHhCCCccCCceEE
Q 029496 23 LYISNLEYGVSNEDIKELFSEVGELKRCSVHFDRSGRSKGTAEVVLTRRADAIAAVKRYNNVQLDGKPMK 92 (192)
Q Consensus 23 l~V~nL~~~~te~~L~~~f~~~G~i~~v~i~~~~tg~~~g~afV~f~~~~~a~~Ai~~l~~~~l~g~~i~ 92 (192)
|||+|||+++++++|.++|..||.|..+.+..++++..+++|||+|.+.++|++|++.+++..|+|+.|+
T Consensus 1 v~i~nlp~~~~~~~l~~~f~~~g~v~~v~~~~~~~~~~~~~a~v~f~~~~~a~~al~~~~~~~~~g~~l~ 70 (70)
T PF14259_consen 1 VYISNLPPSTTEEDLRNFFSRFGPVEKVRLIKNKDGQSRGFAFVEFSSEEDAKRALELLNGKEIDGRKLR 70 (70)
T ss_dssp EEEESSTTT--HHHHHHHCTTSSBEEEEEEEESTTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred CEEeCCCCCCCHHHHHHHHHhcCCcceEEEEeeeccccCCEEEEEeCCHHHHHHHHHHCCCcEECCEEcC
Confidence 7999999999999999999999999999999988788899999999999999999999998999999874
No 18
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.63 E-value=3.3e-15 Score=131.96 Aligned_cols=83 Identities=19% Similarity=0.315 Sum_probs=78.1
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHhhhCCCeEEEEEEeCC-CCCcceEEEEEEcCHHHHHHHHHHhCCCccCCceEEEEEee
Q 029496 19 SGTKLYISNLEYGVSNEDIKELFSEVGELKRCSVHFDR-SGRSKGTAEVVLTRRADAIAAVKRYNNVQLDGKPMKIEIIG 97 (192)
Q Consensus 19 ~~~~l~V~nL~~~~te~~L~~~f~~~G~i~~v~i~~~~-tg~~~g~afV~f~~~~~a~~Ai~~l~~~~l~g~~i~V~~~~ 97 (192)
..++|||+||++++++++|+++|+.||.|.++.|..++ +++++|||||+|.+.++|.+||+.||++.|+|+.|+|.++.
T Consensus 203 ~~~rLfVgnLp~~vteedLk~lFs~FG~I~svrl~~D~~tgksKGfGFVeFe~~e~A~kAI~amNg~elgGr~LrV~kAi 282 (612)
T TIGR01645 203 KFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIASMNLFDLGGQYLRVGKCV 282 (612)
T ss_pred ccceEEeecCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcCCeEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEecC
Confidence 45799999999999999999999999999999999998 88999999999999999999999999999999999999987
Q ss_pred cCCC
Q 029496 98 TNIG 101 (192)
Q Consensus 98 ~~~~ 101 (192)
++..
T Consensus 283 ~pP~ 286 (612)
T TIGR01645 283 TPPD 286 (612)
T ss_pred CCcc
Confidence 6443
No 19
>PLN03120 nucleic acid binding protein; Provisional
Probab=99.62 E-value=3.7e-15 Score=118.45 Aligned_cols=78 Identities=18% Similarity=0.224 Sum_probs=71.4
Q ss_pred CCEEEEcCCCCCCCHHHHHHHhhhCCCeEEEEEEeCCCCCcceEEEEEEcCHHHHHHHHHHhCCCccCCceEEEEEeecC
Q 029496 20 GTKLYISNLEYGVSNEDIKELFSEVGELKRCSVHFDRSGRSKGTAEVVLTRRADAIAAVKRYNNVQLDGKPMKIEIIGTN 99 (192)
Q Consensus 20 ~~~l~V~nL~~~~te~~L~~~f~~~G~i~~v~i~~~~tg~~~g~afV~f~~~~~a~~Ai~~l~~~~l~g~~i~V~~~~~~ 99 (192)
.++|||+|||+.+++++|+++|+.||.|.+|.|+.+.. .++||||+|.++++|+.||. |++..|.|+.|.|.++...
T Consensus 4 ~rtVfVgNLs~~tTE~dLrefFS~~G~I~~V~I~~d~~--~~GfAFVtF~d~eaAe~All-LnG~~l~gr~V~Vt~a~~~ 80 (260)
T PLN03120 4 VRTVKVSNVSLKATERDIKEFFSFSGDIEYVEMQSENE--RSQIAYVTFKDPQGAETALL-LSGATIVDQSVTITPAEDY 80 (260)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCC--CCCEEEEEeCcHHHHHHHHH-hcCCeeCCceEEEEeccCC
Confidence 57999999999999999999999999999999998762 46899999999999999995 9999999999999998754
Q ss_pred C
Q 029496 100 I 100 (192)
Q Consensus 100 ~ 100 (192)
.
T Consensus 81 ~ 81 (260)
T PLN03120 81 Q 81 (260)
T ss_pred C
Confidence 3
No 20
>KOG0130 consensus RNA-binding protein RBM8/Tsunagi (RRM superfamily) [General function prediction only]
Probab=99.60 E-value=3.9e-15 Score=106.22 Aligned_cols=87 Identities=24% Similarity=0.362 Sum_probs=81.1
Q ss_pred CCCCCCCEEEEcCCCCCCCHHHHHHHhhhCCCeEEEEEEeCC-CCCcceEEEEEEcCHHHHHHHHHHhCCCccCCceEEE
Q 029496 15 SSIESGTKLYISNLEYGVSNEDIKELFSEVGELKRCSVHFDR-SGRSKGTAEVVLTRRADAIAAVKRYNNVQLDGKPMKI 93 (192)
Q Consensus 15 ~~~~~~~~l~V~nL~~~~te~~L~~~f~~~G~i~~v~i~~~~-tg~~~g~afV~f~~~~~a~~Ai~~l~~~~l~g~~i~V 93 (192)
..+-.+.-|||.++++.+||++|.+.|..||+|++|.|..|+ ||..+|||+|+|++.++|++|+..+|+..|.++.|.|
T Consensus 67 qrSVEGwIi~VtgvHeEatEedi~d~F~dyGeiKNihLNLDRRtGy~KGYaLvEYet~keAq~A~~~~Ng~~ll~q~v~V 146 (170)
T KOG0130|consen 67 QRSVEGWIIFVTGVHEEATEEDIHDKFADYGEIKNIHLNLDRRTGYVKGYALVEYETLKEAQAAIDALNGAELLGQNVSV 146 (170)
T ss_pred ccceeeEEEEEeccCcchhHHHHHHHHhhcccccceeeccccccccccceeeeehHhHHHHHHHHHhccchhhhCCceeE
Confidence 345677899999999999999999999999999999999999 9999999999999999999999999999999999999
Q ss_pred EEeecCCC
Q 029496 94 EIIGTNIG 101 (192)
Q Consensus 94 ~~~~~~~~ 101 (192)
.++..+.+
T Consensus 147 Dw~Fv~gp 154 (170)
T KOG0130|consen 147 DWCFVKGP 154 (170)
T ss_pred EEEEecCC
Confidence 99876443
No 21
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.60 E-value=3e-15 Score=132.26 Aligned_cols=81 Identities=21% Similarity=0.408 Sum_probs=76.4
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHhhhCCCeEEEEEEeCC-CCCcceEEEEEEcCHHHHHHHHHHhCCCccCCceEEEE
Q 029496 16 SIESGTKLYISNLEYGVSNEDIKELFSEVGELKRCSVHFDR-SGRSKGTAEVVLTRRADAIAAVKRYNNVQLDGKPMKIE 94 (192)
Q Consensus 16 ~~~~~~~l~V~nL~~~~te~~L~~~f~~~G~i~~v~i~~~~-tg~~~g~afV~f~~~~~a~~Ai~~l~~~~l~g~~i~V~ 94 (192)
.....++|||+||++.+++++|+++|.+||.|.+|.|+.|+ +++++|||||+|.+.++|++|++.||+..|.|+.|+|.
T Consensus 103 a~~~~~rLfVGnLp~~~tEe~Lr~lF~~fG~I~sV~I~~D~~TgkskGfAFVeF~s~e~A~~Ai~~lnG~~i~GR~IkV~ 182 (612)
T TIGR01645 103 ALAIMCRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVG 182 (612)
T ss_pred hhcCCCEEEEcCCCCCCCHHHHHHHHHccCCEEEEEEeecCCCCCcCCeEEEEeCcHHHHHHHHHhcCCeEEecceeeec
Confidence 44567899999999999999999999999999999999998 99999999999999999999999999999999999998
Q ss_pred Ee
Q 029496 95 II 96 (192)
Q Consensus 95 ~~ 96 (192)
..
T Consensus 183 rp 184 (612)
T TIGR01645 183 RP 184 (612)
T ss_pred cc
Confidence 43
No 22
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=99.59 E-value=1.5e-14 Score=126.90 Aligned_cols=82 Identities=24% Similarity=0.328 Sum_probs=77.5
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHhhhCCCeEEEEEEeCC-CCCcceEEEEEEcCHHHHHHHHHHhCCCccCCceEEEEEe
Q 029496 18 ESGTKLYISNLEYGVSNEDIKELFSEVGELKRCSVHFDR-SGRSKGTAEVVLTRRADAIAAVKRYNNVQLDGKPMKIEII 96 (192)
Q Consensus 18 ~~~~~l~V~nL~~~~te~~L~~~f~~~G~i~~v~i~~~~-tg~~~g~afV~f~~~~~a~~Ai~~l~~~~l~g~~i~V~~~ 96 (192)
....+|||+|||..+++++|+++|..||.|..+.|+.+. ++.++|||||+|.+.++|+.||+.|++..|.++.|.|+++
T Consensus 293 ~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~A~~~l~g~~~~~~~l~v~~a 372 (509)
T TIGR01642 293 DSKDRIYIGNLPLYLGEDQIKELLESFGDLKAFNLIKDIATGLSKGYAFCEYKDPSVTDVAIAALNGKDTGDNKLHVQRA 372 (509)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEC
Confidence 456799999999999999999999999999999999998 9999999999999999999999999999999999999998
Q ss_pred ecC
Q 029496 97 GTN 99 (192)
Q Consensus 97 ~~~ 99 (192)
...
T Consensus 373 ~~~ 375 (509)
T TIGR01642 373 CVG 375 (509)
T ss_pred ccC
Confidence 654
No 23
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=99.59 E-value=3.5e-15 Score=111.44 Aligned_cols=84 Identities=27% Similarity=0.396 Sum_probs=79.6
Q ss_pred CCCCCCCEEEEcCCCCCCCHHHHHHHhhhCCCeEEEEEEeCC-CCCcceEEEEEEcCHHHHHHHHHHhCCCccCCceEEE
Q 029496 15 SSIESGTKLYISNLEYGVSNEDIKELFSEVGELKRCSVHFDR-SGRSKGTAEVVLTRRADAIAAVKRYNNVQLDGKPMKI 93 (192)
Q Consensus 15 ~~~~~~~~l~V~nL~~~~te~~L~~~f~~~G~i~~v~i~~~~-tg~~~g~afV~f~~~~~a~~Ai~~l~~~~l~g~~i~V 93 (192)
.+.+...+|||+||+..++++.|+++|-+.|+|.++.++.|+ +...+|||||+|.++++|+.|++.|+...|.|++|+|
T Consensus 4 ~~rnqd~tiyvgnld~kvs~~~l~EL~iqagpVv~i~iPkDrv~~~~qGygF~Ef~~eedadYAikiln~VkLYgrpIrv 83 (203)
T KOG0131|consen 4 IERNQDATLYVGNLDEKVSEELLYELFIQAGPVVNLHIPKDRVTQKHQGYGFAEFRTEEDADYAIKILNMVKLYGRPIRV 83 (203)
T ss_pred cccCCCceEEEecCCHHHHHHHHHHHHHhcCceeeeecchhhhcccccceeEEEEechhhhHHHHHHHHHHHhcCceeEE
Confidence 355778899999999999999999999999999999999999 9999999999999999999999999999999999999
Q ss_pred EEeec
Q 029496 94 EIIGT 98 (192)
Q Consensus 94 ~~~~~ 98 (192)
..+..
T Consensus 84 ~kas~ 88 (203)
T KOG0131|consen 84 NKASA 88 (203)
T ss_pred Eeccc
Confidence 99874
No 24
>PLN03213 repressor of silencing 3; Provisional
Probab=99.58 E-value=6.9e-15 Score=124.29 Aligned_cols=79 Identities=18% Similarity=0.322 Sum_probs=71.9
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHhhhCCCeEEEEEEeCCCCCcceEEEEEEcCH--HHHHHHHHHhCCCccCCceEEEEE
Q 029496 18 ESGTKLYISNLEYGVSNEDIKELFSEVGELKRCSVHFDRSGRSKGTAEVVLTRR--ADAIAAVKRYNNVQLDGKPMKIEI 95 (192)
Q Consensus 18 ~~~~~l~V~nL~~~~te~~L~~~f~~~G~i~~v~i~~~~tg~~~g~afV~f~~~--~~a~~Ai~~l~~~~l~g~~i~V~~ 95 (192)
....+|||+||++.+++++|+.+|..||.|..|.|++. +| +|||||+|.+. .++.+||..|++..+.|+.|+|..
T Consensus 8 ~~gMRIYVGNLSydVTEDDLravFSeFGsVkdVEIpRE-TG--RGFAFVEMssdddaEeeKAISaLNGAEWKGR~LKVNK 84 (759)
T PLN03213 8 GGGVRLHVGGLGESVGRDDLLKIFSPMGTVDAVEFVRT-KG--RSFAYIDFSPSSTNSLTKLFSTYNGCVWKGGRLRLEK 84 (759)
T ss_pred CcceEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEecc-cC--CceEEEEecCCcHHHHHHHHHHhcCCeecCceeEEee
Confidence 45689999999999999999999999999999999932 66 99999999987 689999999999999999999999
Q ss_pred eecC
Q 029496 96 IGTN 99 (192)
Q Consensus 96 ~~~~ 99 (192)
++++
T Consensus 85 AKP~ 88 (759)
T PLN03213 85 AKEH 88 (759)
T ss_pred ccHH
Confidence 8553
No 25
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.57 E-value=1.2e-14 Score=128.19 Aligned_cols=78 Identities=22% Similarity=0.415 Sum_probs=71.3
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHhhhCCCeEEEEEEeCCCCCcceEEEEEEcCHHHHHHHHHHhCCCccC-CceEEEE
Q 029496 17 IESGTKLYISNLEYGVSNEDIKELFSEVGELKRCSVHFDRSGRSKGTAEVVLTRRADAIAAVKRYNNVQLD-GKPMKIE 94 (192)
Q Consensus 17 ~~~~~~l~V~nL~~~~te~~L~~~f~~~G~i~~v~i~~~~tg~~~g~afV~f~~~~~a~~Ai~~l~~~~l~-g~~i~V~ 94 (192)
....++|||+|||++++|++|+++|++||.|.+|+|+.|.++++++||||+|.+.++|++||+.|++..|. ++.|.|.
T Consensus 55 p~~~~~lFVgnLp~~~tEd~L~~~F~~~G~I~~vrl~~D~sG~sRGfaFV~F~~~e~A~~Ai~~lng~~i~~Gr~l~V~ 133 (578)
T TIGR01648 55 PGRGCEVFVGKIPRDLYEDELVPLFEKAGPIYELRLMMDFSGQNRGYAFVTFCGKEEAKEAVKLLNNYEIRPGRLLGVC 133 (578)
T ss_pred CCCCCEEEeCCCCCCCCHHHHHHHHHhhCCEEEEEEEECCCCCccceEEEEeCCHHHHHHHHHHcCCCeecCCcccccc
Confidence 45679999999999999999999999999999999999999999999999999999999999999998875 6665554
No 26
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=99.57 E-value=1.2e-14 Score=129.19 Aligned_cols=77 Identities=30% Similarity=0.422 Sum_probs=73.9
Q ss_pred CEEEEcCCCCCCCHHHHHHHhhhCCCeEEEEEEeCC-CCCcceEEEEEEcCHHHHHHHHHHhCCCccCCceEEEEEee
Q 029496 21 TKLYISNLEYGVSNEDIKELFSEVGELKRCSVHFDR-SGRSKGTAEVVLTRRADAIAAVKRYNNVQLDGKPMKIEIIG 97 (192)
Q Consensus 21 ~~l~V~nL~~~~te~~L~~~f~~~G~i~~v~i~~~~-tg~~~g~afV~f~~~~~a~~Ai~~l~~~~l~g~~i~V~~~~ 97 (192)
.+|||+|||.++||++|+++|++||.|.+|+|+.|. +++++|||||+|.+.++|++|++.|+...|.|+.|+|.++.
T Consensus 1 ~sl~VgnLp~~vte~~L~~~F~~~G~v~~v~v~~d~~t~~s~G~afV~F~~~~~A~~Al~~ln~~~i~gk~i~i~~s~ 78 (562)
T TIGR01628 1 ASLYVGDLDPDVTEAKLYDLFKPFGPVLSVRVCRDSVTRRSLGYGYVNFQNPADAERALETMNFKRLGGKPIRIMWSQ 78 (562)
T ss_pred CeEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeeEEeeccc
Confidence 379999999999999999999999999999999999 89999999999999999999999999999999999998874
No 27
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.57 E-value=1.9e-14 Score=124.73 Aligned_cols=80 Identities=26% Similarity=0.562 Sum_probs=76.5
Q ss_pred CCEEEEcCCCCCCCHHHHHHHhhhCCCeEEEEEEeCC-CCCcceEEEEEEcCHHHHHHHHHHhCCCccCCceEEEEEeec
Q 029496 20 GTKLYISNLEYGVSNEDIKELFSEVGELKRCSVHFDR-SGRSKGTAEVVLTRRADAIAAVKRYNNVQLDGKPMKIEIIGT 98 (192)
Q Consensus 20 ~~~l~V~nL~~~~te~~L~~~f~~~G~i~~v~i~~~~-tg~~~g~afV~f~~~~~a~~Ai~~l~~~~l~g~~i~V~~~~~ 98 (192)
.++|||+|||..+++++|+++|++||.|..|.|+.+. ++++++||||+|.+.++|++|++.|++..|.|+.|.|.++..
T Consensus 186 ~~~l~v~nl~~~~te~~l~~~f~~~G~i~~v~~~~d~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~i~g~~i~v~~a~~ 265 (457)
T TIGR01622 186 FLKLYVGNLHFNITEQELRQIFEPFGDIEDVQLHRDPETGRSKGFGFIQFHDAEEAKEALEVMNGFELAGRPIKVGYAQD 265 (457)
T ss_pred CCEEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhcCCcEECCEEEEEEEccC
Confidence 6899999999999999999999999999999999998 889999999999999999999999999999999999999874
Q ss_pred C
Q 029496 99 N 99 (192)
Q Consensus 99 ~ 99 (192)
.
T Consensus 266 ~ 266 (457)
T TIGR01622 266 S 266 (457)
T ss_pred C
Confidence 3
No 28
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=99.57 E-value=1.9e-14 Score=127.93 Aligned_cols=83 Identities=33% Similarity=0.551 Sum_probs=78.3
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHhhhCCCeEEEEEEeCCCCCcceEEEEEEcCHHHHHHHHHHhCCCccCCceEEEEEe
Q 029496 17 IESGTKLYISNLEYGVSNEDIKELFSEVGELKRCSVHFDRSGRSKGTAEVVLTRRADAIAAVKRYNNVQLDGKPMKIEII 96 (192)
Q Consensus 17 ~~~~~~l~V~nL~~~~te~~L~~~f~~~G~i~~v~i~~~~tg~~~g~afV~f~~~~~a~~Ai~~l~~~~l~g~~i~V~~~ 96 (192)
....++|||+||++++++++|+++|++||.|.+|.|+.+.++.++|||||+|.+.++|++|+..||+..|+|++|.|.++
T Consensus 282 ~~~~~~l~V~nl~~~~~~~~L~~~F~~~G~i~~~~i~~d~~g~~~g~gfV~f~~~~~A~~A~~~~~g~~~~gk~l~V~~a 361 (562)
T TIGR01628 282 KAQGVNLYVKNLDDTVTDEKLRELFSECGEITSAKVMLDEKGVSRGFGFVCFSNPEEANRAVTEMHGRMLGGKPLYVALA 361 (562)
T ss_pred ccCCCEEEEeCCCCccCHHHHHHHHHhcCCeEEEEEEECCCCCcCCeEEEEeCCHHHHHHHHHHhcCCeeCCceeEEEec
Confidence 34567899999999999999999999999999999999988999999999999999999999999999999999999998
Q ss_pred ecC
Q 029496 97 GTN 99 (192)
Q Consensus 97 ~~~ 99 (192)
..+
T Consensus 362 ~~k 364 (562)
T TIGR01628 362 QRK 364 (562)
T ss_pred cCc
Confidence 754
No 29
>smart00362 RRM_2 RNA recognition motif.
Probab=99.57 E-value=2.7e-14 Score=91.32 Aligned_cols=72 Identities=38% Similarity=0.642 Sum_probs=66.9
Q ss_pred EEEEcCCCCCCCHHHHHHHhhhCCCeEEEEEEeCCCCCcceEEEEEEcCHHHHHHHHHHhCCCccCCceEEEE
Q 029496 22 KLYISNLEYGVSNEDIKELFSEVGELKRCSVHFDRSGRSKGTAEVVLTRRADAIAAVKRYNNVQLDGKPMKIE 94 (192)
Q Consensus 22 ~l~V~nL~~~~te~~L~~~f~~~G~i~~v~i~~~~tg~~~g~afV~f~~~~~a~~Ai~~l~~~~l~g~~i~V~ 94 (192)
+|||+|||..+++++|+++|.+||.|..+.+..++ +.++++|||+|.+.++|+.|++.+++..+.++.|.|+
T Consensus 1 ~v~i~~l~~~~~~~~l~~~~~~~g~v~~~~~~~~~-~~~~~~~~v~f~~~~~a~~a~~~~~~~~~~~~~i~v~ 72 (72)
T smart00362 1 TLFVGNLPPDVTEEDLKELFSKFGPIESVKIPKDT-GKSKGFAFVEFESEEDAEKAIEALNGTKLGGRPLRVE 72 (72)
T ss_pred CEEEcCCCCcCCHHHHHHHHHhcCCEEEEEEecCC-CCCCceEEEEeCCHHHHHHHHHHhCCcEECCEEEeeC
Confidence 58999999999999999999999999999988776 6778999999999999999999999999999998873
No 30
>KOG0126 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.56 E-value=4.7e-16 Score=116.06 Aligned_cols=82 Identities=26% Similarity=0.489 Sum_probs=76.8
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHhhhCCCeEEEEEEeCC-CCCcceEEEEEEcCHHHHHHHHHHhCCCccCCceEEEEEe
Q 029496 18 ESGTKLYISNLEYGVSNEDIKELFSEVGELKRCSVHFDR-SGRSKGTAEVVLTRRADAIAAVKRYNNVQLDGKPMKIEII 96 (192)
Q Consensus 18 ~~~~~l~V~nL~~~~te~~L~~~f~~~G~i~~v~i~~~~-tg~~~g~afV~f~~~~~a~~Ai~~l~~~~l~g~~i~V~~~ 96 (192)
.++.-|||+|||+..||.||..+|++||+|++|.|++|+ ||+++||||+.|++..+.--||..||+..|.|+.|+|...
T Consensus 33 kdsA~Iyiggl~~~LtEgDil~VFSqyGe~vdinLiRDk~TGKSKGFaFLcYEDQRSTILAVDN~NGiki~gRtirVDHv 112 (219)
T KOG0126|consen 33 KDSAYIYIGGLPYELTEGDILCVFSQYGEIVDINLIRDKKTGKSKGFAFLCYEDQRSTILAVDNLNGIKILGRTIRVDHV 112 (219)
T ss_pred ccceEEEECCCcccccCCcEEEEeeccCceEEEEEEecCCCCcccceEEEEecCccceEEEEeccCCceecceeEEeeec
Confidence 456789999999999999999999999999999999999 9999999999999999999999999999999999999876
Q ss_pred ecC
Q 029496 97 GTN 99 (192)
Q Consensus 97 ~~~ 99 (192)
...
T Consensus 113 ~~Y 115 (219)
T KOG0126|consen 113 SNY 115 (219)
T ss_pred ccc
Confidence 443
No 31
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=99.56 E-value=2.9e-14 Score=119.08 Aligned_cols=86 Identities=22% Similarity=0.424 Sum_probs=79.3
Q ss_pred CCCCCCCEEEEcCCCCCCCHHHHHHHhhhCCCeEEEEEEeCC-CCCcceEEEEEEcCHHHHHHHHHHhCCCccC-CceEE
Q 029496 15 SSIESGTKLYISNLEYGVSNEDIKELFSEVGELKRCSVHFDR-SGRSKGTAEVVLTRRADAIAAVKRYNNVQLD-GKPMK 92 (192)
Q Consensus 15 ~~~~~~~~l~V~nL~~~~te~~L~~~f~~~G~i~~v~i~~~~-tg~~~g~afV~f~~~~~a~~Ai~~l~~~~l~-g~~i~ 92 (192)
+....+|-|||+.||.++.|++|.-||++.|+|-+++|+.|+ +|.++|||||+|.+.++|++||+.||+.+|. |+.|.
T Consensus 78 ~~p~~G~EVfvGkIPrD~~EdeLvplfEkiG~I~elRLMmD~~sG~nRGYAFVtf~~Ke~Aq~Aik~lnn~Eir~GK~ig 157 (506)
T KOG0117|consen 78 PPPPRGCEVFVGKIPRDVFEDELVPLFEKIGKIYELRLMMDPFSGDNRGYAFVTFCTKEEAQEAIKELNNYEIRPGKLLG 157 (506)
T ss_pred CCCCCCceEEecCCCccccchhhHHHHHhccceeeEEEeecccCCCCcceEEEEeecHHHHHHHHHHhhCccccCCCEeE
Confidence 344788999999999999999999999999999999999998 9999999999999999999999999999985 89999
Q ss_pred EEEeecCC
Q 029496 93 IEIIGTNI 100 (192)
Q Consensus 93 V~~~~~~~ 100 (192)
|+.+..+.
T Consensus 158 vc~Svan~ 165 (506)
T KOG0117|consen 158 VCVSVANC 165 (506)
T ss_pred EEEeeecc
Confidence 88875543
No 32
>PLN03121 nucleic acid binding protein; Provisional
Probab=99.55 E-value=4.8e-14 Score=110.60 Aligned_cols=79 Identities=18% Similarity=0.195 Sum_probs=71.2
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHhhhCCCeEEEEEEeCCCCCcceEEEEEEcCHHHHHHHHHHhCCCccCCceEEEEEeec
Q 029496 19 SGTKLYISNLEYGVSNEDIKELFSEVGELKRCSVHFDRSGRSKGTAEVVLTRRADAIAAVKRYNNVQLDGKPMKIEIIGT 98 (192)
Q Consensus 19 ~~~~l~V~nL~~~~te~~L~~~f~~~G~i~~v~i~~~~tg~~~g~afV~f~~~~~a~~Ai~~l~~~~l~g~~i~V~~~~~ 98 (192)
.+.+|||+||++.+|+++|+++|+.||.|.+|.|+.+. ...+||||+|.++++++.|+ .|++..|.++.|.|.....
T Consensus 4 ~g~TV~V~NLS~~tTE~dLrefFS~~G~I~~V~I~~D~--et~gfAfVtF~d~~aaetAl-lLnGa~l~d~~I~It~~~~ 80 (243)
T PLN03121 4 GGYTAEVTNLSPKATEKDVYDFFSHCGAIEHVEIIRSG--EYACTAYVTFKDAYALETAV-LLSGATIVDQRVCITRWGQ 80 (243)
T ss_pred CceEEEEecCCCCCCHHHHHHHHHhcCCeEEEEEecCC--CcceEEEEEECCHHHHHHHH-hcCCCeeCCceEEEEeCcc
Confidence 46899999999999999999999999999999999884 34579999999999999999 6999999999999988765
Q ss_pred CC
Q 029496 99 NI 100 (192)
Q Consensus 99 ~~ 100 (192)
..
T Consensus 81 y~ 82 (243)
T PLN03121 81 YE 82 (243)
T ss_pred cc
Confidence 33
No 33
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=99.53 E-value=1.4e-13 Score=114.85 Aligned_cols=80 Identities=24% Similarity=0.486 Sum_probs=74.7
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHhh-hCCCeEEEEEEeCCCCCcceEEEEEEcCHHHHHHHHHHhCCCccCCceEEEEEee
Q 029496 19 SGTKLYISNLEYGVSNEDIKELFS-EVGELKRCSVHFDRSGRSKGTAEVVLTRRADAIAAVKRYNNVQLDGKPMKIEIIG 97 (192)
Q Consensus 19 ~~~~l~V~nL~~~~te~~L~~~f~-~~G~i~~v~i~~~~tg~~~g~afV~f~~~~~a~~Ai~~l~~~~l~g~~i~V~~~~ 97 (192)
....+||+|||+++.|++|++||. +.|+|.+|.|..|.+++++++|.|+|+++|.+++|++.|+.+.++|++|.|+...
T Consensus 43 r~R~vfItNIpyd~rWqdLKdLvrekvGev~yveLl~D~~GK~rGcavVEFk~~E~~qKa~E~lnk~~~~GR~l~vKEd~ 122 (608)
T KOG4212|consen 43 RDRSVFITNIPYDYRWQDLKDLVREKVGEVEYVELLFDESGKARGCAVVEFKDPENVQKALEKLNKYEVNGRELVVKEDH 122 (608)
T ss_pred ccceEEEecCcchhhhHhHHHHHHHhcCceEeeeeecccCCCcCCceEEEeeCHHHHHHHHHHhhhccccCceEEEeccC
Confidence 345699999999999999999996 7899999999999999999999999999999999999999999999999998765
Q ss_pred c
Q 029496 98 T 98 (192)
Q Consensus 98 ~ 98 (192)
.
T Consensus 123 d 123 (608)
T KOG4212|consen 123 D 123 (608)
T ss_pred c
Confidence 4
No 34
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.53 E-value=6.4e-14 Score=121.41 Aligned_cols=80 Identities=26% Similarity=0.401 Sum_probs=74.6
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHhhhCCCeEEEEEEeCC-CCCcceEEEEEEcCHHHHHHHHHHhCCCccCCceEEEEEe
Q 029496 18 ESGTKLYISNLEYGVSNEDIKELFSEVGELKRCSVHFDR-SGRSKGTAEVVLTRRADAIAAVKRYNNVQLDGKPMKIEII 96 (192)
Q Consensus 18 ~~~~~l~V~nL~~~~te~~L~~~f~~~G~i~~v~i~~~~-tg~~~g~afV~f~~~~~a~~Ai~~l~~~~l~g~~i~V~~~ 96 (192)
.+..+|||+|||..+++++|+++|.+||.|..|.|+.++ +++++|||||+|.+.++|++||. |++..|.|+.|.|.++
T Consensus 87 ~~~~~l~V~nlp~~~~~~~l~~~F~~~G~v~~v~i~~d~~~~~skg~afVeF~~~e~A~~Al~-l~g~~~~g~~i~v~~~ 165 (457)
T TIGR01622 87 RDDRTVFVLQLALKARERDLYEFFSKVGKVRDVQCIKDRNSRRSKGVAYVEFYDVESVIKALA-LTGQMLLGRPIIVQSS 165 (457)
T ss_pred cCCcEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEECCHHHHHHHHH-hCCCEECCeeeEEeec
Confidence 346799999999999999999999999999999999998 89999999999999999999995 8999999999999876
Q ss_pred ec
Q 029496 97 GT 98 (192)
Q Consensus 97 ~~ 98 (192)
..
T Consensus 166 ~~ 167 (457)
T TIGR01622 166 QA 167 (457)
T ss_pred ch
Confidence 43
No 35
>KOG0111 consensus Cyclophilin-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.53 E-value=9.5e-15 Score=112.20 Aligned_cols=90 Identities=20% Similarity=0.337 Sum_probs=82.9
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHhhhCCCeEEEEEEeCC-CCCcceEEEEEEcCHHHHHHHHHHhCCCccCCceEEEEE
Q 029496 17 IESGTKLYISNLEYGVSNEDIKELFSEVGELKRCSVHFDR-SGRSKGTAEVVLTRRADAIAAVKRYNNVQLDGKPMKIEI 95 (192)
Q Consensus 17 ~~~~~~l~V~nL~~~~te~~L~~~f~~~G~i~~v~i~~~~-tg~~~g~afV~f~~~~~a~~Ai~~l~~~~l~g~~i~V~~ 95 (192)
.....+|||++|..+++|..|...|-.||.|.+|.++.|. +.++++|+||+|...++|.+||..||..+|.|+.|+|.+
T Consensus 7 a~~KrtlYVGGladeVtekvLhaAFIPFGDI~dIqiPlDyesqkHRgFgFVefe~aEDAaaAiDNMnesEL~GrtirVN~ 86 (298)
T KOG0111|consen 7 ANQKRTLYVGGLADEVTEKVLHAAFIPFGDIKDIQIPLDYESQKHRGFGFVEFEEAEDAAAAIDNMNESELFGRTIRVNL 86 (298)
T ss_pred cccceeEEeccchHHHHHHHHHhccccccchhhcccccchhcccccceeEEEeeccchhHHHhhcCchhhhcceeEEEee
Confidence 4566799999999999999999999999999999999999 999999999999999999999999999999999999999
Q ss_pred eecCCCCCCCC
Q 029496 96 IGTNIGPPAAV 106 (192)
Q Consensus 96 ~~~~~~~~~~~ 106 (192)
+++........
T Consensus 87 AkP~kikegsq 97 (298)
T KOG0111|consen 87 AKPEKIKEGSQ 97 (298)
T ss_pred cCCccccCCCC
Confidence 98865554443
No 36
>smart00360 RRM RNA recognition motif.
Probab=99.53 E-value=7.3e-14 Score=88.93 Aligned_cols=70 Identities=36% Similarity=0.622 Sum_probs=65.8
Q ss_pred EcCCCCCCCHHHHHHHhhhCCCeEEEEEEeCC-CCCcceEEEEEEcCHHHHHHHHHHhCCCccCCceEEEE
Q 029496 25 ISNLEYGVSNEDIKELFSEVGELKRCSVHFDR-SGRSKGTAEVVLTRRADAIAAVKRYNNVQLDGKPMKIE 94 (192)
Q Consensus 25 V~nL~~~~te~~L~~~f~~~G~i~~v~i~~~~-tg~~~g~afV~f~~~~~a~~Ai~~l~~~~l~g~~i~V~ 94 (192)
|+|||..+++++|+.+|.+||.|..+.+..++ ++.++++|||+|.+.++|+.|++.|++..++++.|.|+
T Consensus 1 i~~l~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~a~v~f~~~~~a~~a~~~~~~~~~~~~~~~v~ 71 (71)
T smart00360 1 VGNLPPDVTEEELRELFSKFGKIESVRLVRDKDTGKSKGFAFVEFESEEDAEKALEALNGKELDGRPLKVK 71 (71)
T ss_pred CCCCCcccCHHHHHHHHHhhCCEeEEEEEeCCCCCCCCceEEEEeCCHHHHHHHHHHcCCCeeCCcEEEeC
Confidence 57999999999999999999999999999988 78999999999999999999999999999999998873
No 37
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.52 E-value=4.4e-14 Score=111.45 Aligned_cols=86 Identities=22% Similarity=0.368 Sum_probs=79.5
Q ss_pred CCCCCCCEEEEcCCCCCCCHHHHHHHhhhCCCeEEEEEEeCC-CCCcceEEEEEEcCHHHHHHHHHHhCCCccCCceEEE
Q 029496 15 SSIESGTKLYISNLEYGVSNEDIKELFSEVGELKRCSVHFDR-SGRSKGTAEVVLTRRADAIAAVKRYNNVQLDGKPMKI 93 (192)
Q Consensus 15 ~~~~~~~~l~V~nL~~~~te~~L~~~f~~~G~i~~v~i~~~~-tg~~~g~afV~f~~~~~a~~Ai~~l~~~~l~g~~i~V 93 (192)
+......-|||+.|...++-++|++.|.+||+|.+++|++|. |+++|||+||.|.+.++|+.||..|++..|..+.|+-
T Consensus 57 ~t~~~hfhvfvgdls~eI~~e~lr~aF~pFGevS~akvirD~~T~KsKGYgFVSf~~k~dAEnAI~~MnGqWlG~R~IRT 136 (321)
T KOG0148|consen 57 PTSNQHFHVFVGDLSPEIDNEKLREAFAPFGEVSDAKVIRDMNTGKSKGYGFVSFPNKEDAENAIQQMNGQWLGRRTIRT 136 (321)
T ss_pred CccccceeEEehhcchhcchHHHHHHhccccccccceEeecccCCcccceeEEeccchHHHHHHHHHhCCeeeccceeec
Confidence 344446689999999999999999999999999999999999 9999999999999999999999999999999999999
Q ss_pred EEeecCC
Q 029496 94 EIIGTNI 100 (192)
Q Consensus 94 ~~~~~~~ 100 (192)
.+++.+.
T Consensus 137 NWATRKp 143 (321)
T KOG0148|consen 137 NWATRKP 143 (321)
T ss_pred cccccCc
Confidence 9986544
No 38
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=99.51 E-value=8.9e-14 Score=110.47 Aligned_cols=79 Identities=33% Similarity=0.631 Sum_probs=76.2
Q ss_pred CCEEEEcCCCCCCCHHHHHHHhhhCCCeEEEEEEeCC-CCCcceEEEEEEcCHHHHHHHHHHhCCCccCCceEEEEEeec
Q 029496 20 GTKLYISNLEYGVSNEDIKELFSEVGELKRCSVHFDR-SGRSKGTAEVVLTRRADAIAAVKRYNNVQLDGKPMKIEIIGT 98 (192)
Q Consensus 20 ~~~l~V~nL~~~~te~~L~~~f~~~G~i~~v~i~~~~-tg~~~g~afV~f~~~~~a~~Ai~~l~~~~l~g~~i~V~~~~~ 98 (192)
.++|||+|||..+++++|+++|.+||.|..+.+..++ ++.+++||||+|.+.++|+.|+..+++..|.++.|.|.++..
T Consensus 115 ~~~l~v~nL~~~~~~~~l~~~F~~~g~~~~~~~~~d~~~~~~~g~~~v~f~~~~~~~~a~~~~~~~~~~~~~~~v~~~~~ 194 (306)
T COG0724 115 NNTLFVGNLPYDVTEEDLRELFKKFGPVKRVRLVRDRETGKSRGFAFVEFESEESAEKAIEELNGKELEGRPLRVQKAQP 194 (306)
T ss_pred CceEEEeCCCCCCCHHHHHHHHHhcCceeEEEeeeccccCccCceEEEEecCHHHHHHHHHHcCCCeECCceeEeecccc
Confidence 5999999999999999999999999999999999998 999999999999999999999999999999999999999764
No 39
>KOG0114 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.51 E-value=1.1e-13 Score=94.61 Aligned_cols=81 Identities=23% Similarity=0.387 Sum_probs=73.0
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHhhhCCCeEEEEEEeCCCCCcceEEEEEEcCHHHHHHHHHHhCCCccCCceEEEEE
Q 029496 16 SIESGTKLYISNLEYGVSNEDIKELFSEVGELKRCSVHFDRSGRSKGTAEVVLTRRADAIAAVKRYNNVQLDGKPMKIEI 95 (192)
Q Consensus 16 ~~~~~~~l~V~nL~~~~te~~L~~~f~~~G~i~~v~i~~~~tg~~~g~afV~f~~~~~a~~Ai~~l~~~~l~g~~i~V~~ 95 (192)
+++...-|||.|||..+|.++..++|.+||.|..|+|-..+ ..+|.|||.|++..+|++|++.|.+..+.++.+.|-+
T Consensus 14 ppevnriLyirNLp~~ITseemydlFGkyg~IrQIRiG~~k--~TrGTAFVVYedi~dAk~A~dhlsg~n~~~ryl~vly 91 (124)
T KOG0114|consen 14 PPEVNRILYIRNLPFKITSEEMYDLFGKYGTIRQIRIGNTK--ETRGTAFVVYEDIFDAKKACDHLSGYNVDNRYLVVLY 91 (124)
T ss_pred ChhhheeEEEecCCccccHHHHHHHhhcccceEEEEecCcc--CcCceEEEEehHhhhHHHHHHHhcccccCCceEEEEe
Confidence 44566789999999999999999999999999999998766 2389999999999999999999999999999999987
Q ss_pred eec
Q 029496 96 IGT 98 (192)
Q Consensus 96 ~~~ 98 (192)
-.+
T Consensus 92 yq~ 94 (124)
T KOG0114|consen 92 YQP 94 (124)
T ss_pred cCH
Confidence 654
No 40
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=99.51 E-value=2.8e-13 Score=87.03 Aligned_cols=74 Identities=34% Similarity=0.593 Sum_probs=68.9
Q ss_pred EEEEcCCCCCCCHHHHHHHhhhCCCeEEEEEEeCCCCCcceEEEEEEcCHHHHHHHHHHhCCCccCCceEEEEE
Q 029496 22 KLYISNLEYGVSNEDIKELFSEVGELKRCSVHFDRSGRSKGTAEVVLTRRADAIAAVKRYNNVQLDGKPMKIEI 95 (192)
Q Consensus 22 ~l~V~nL~~~~te~~L~~~f~~~G~i~~v~i~~~~tg~~~g~afV~f~~~~~a~~Ai~~l~~~~l~g~~i~V~~ 95 (192)
+|+|+|||..+++++|+++|..||.|..+.+..++...++++|||+|.+.++|+.|++.+++..++++.|.|.+
T Consensus 1 ~i~i~~l~~~~~~~~i~~~~~~~g~i~~~~~~~~~~~~~~~~~~v~f~s~~~a~~a~~~~~~~~~~~~~~~v~~ 74 (74)
T cd00590 1 TLFVGNLPPDVTEEDLRELFSKFGKVESVRIVRDKDTKSKGFAFVEFEDEEDAEKALEALNGKELGGRPLRVEF 74 (74)
T ss_pred CEEEeCCCCccCHHHHHHHHHhcCCEEEEEEeeCCCCCcceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEeC
Confidence 58999999999999999999999999999999887557789999999999999999999999999999998864
No 41
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.50 E-value=2.4e-13 Score=107.29 Aligned_cols=84 Identities=21% Similarity=0.331 Sum_probs=76.9
Q ss_pred CCCCCCCEEEEcCCCCCCCHHHHHHHhhhCCCeEEEEEEeCCCCCcceEEEEEEcCHHHHHHHHHHhCCCccCCceEEEE
Q 029496 15 SSIESGTKLYISNLEYGVSNEDIKELFSEVGELKRCSVHFDRSGRSKGTAEVVLTRRADAIAAVKRYNNVQLDGKPMKIE 94 (192)
Q Consensus 15 ~~~~~~~~l~V~nL~~~~te~~L~~~f~~~G~i~~v~i~~~~tg~~~g~afV~f~~~~~a~~Ai~~l~~~~l~g~~i~V~ 94 (192)
..+.+.|+|||+|++..+||++|+..|+.||.|.+|+|.++ +||+||.|++.|.|..||..+|+.+|.|+.+++.
T Consensus 159 Qssp~NtsVY~G~I~~~lte~~mr~~Fs~fG~I~EVRvFk~-----qGYaFVrF~tkEaAahAIv~mNntei~G~~VkCs 233 (321)
T KOG0148|consen 159 QSSPDNTSVYVGNIASGLTEDLMRQTFSPFGPIQEVRVFKD-----QGYAFVRFETKEAAAHAIVQMNNTEIGGQLVRCS 233 (321)
T ss_pred cCCCCCceEEeCCcCccccHHHHHHhcccCCcceEEEEecc-----cceEEEEecchhhHHHHHHHhcCceeCceEEEEe
Confidence 35578899999999999999999999999999999999977 7999999999999999999999999999999999
Q ss_pred EeecCCCCC
Q 029496 95 IIGTNIGPP 103 (192)
Q Consensus 95 ~~~~~~~~~ 103 (192)
+-+......
T Consensus 234 WGKe~~~~~ 242 (321)
T KOG0148|consen 234 WGKEGDDGI 242 (321)
T ss_pred ccccCCCCC
Confidence 987755443
No 42
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=99.49 E-value=3.6e-13 Score=117.74 Aligned_cols=80 Identities=25% Similarity=0.320 Sum_probs=73.1
Q ss_pred CCCCCEEEEcCCCC-CCCHHHHHHHhhhCCCeEEEEEEeCCCCCcceEEEEEEcCHHHHHHHHHHhCCCccCCceEEEEE
Q 029496 17 IESGTKLYISNLEY-GVSNEDIKELFSEVGELKRCSVHFDRSGRSKGTAEVVLTRRADAIAAVKRYNNVQLDGKPMKIEI 95 (192)
Q Consensus 17 ~~~~~~l~V~nL~~-~~te~~L~~~f~~~G~i~~v~i~~~~tg~~~g~afV~f~~~~~a~~Ai~~l~~~~l~g~~i~V~~ 95 (192)
..++++|||+||++ .+|+++|+++|++||.|.+|+|+.++ ++||||+|.+.++|+.||..|++..|.|+.|+|++
T Consensus 272 ~~~~~~l~v~nL~~~~vt~~~L~~lF~~yG~V~~vki~~~~----~g~afV~f~~~~~A~~Ai~~lng~~l~g~~l~v~~ 347 (481)
T TIGR01649 272 GGPGSVLMVSGLHQEKVNCDRLFNLFCVYGNVERVKFMKNK----KETALIEMADPYQAQLALTHLNGVKLFGKPLRVCP 347 (481)
T ss_pred CCCCCEEEEeCCCCCCCCHHHHHHHHHhcCCeEEEEEEeCC----CCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEE
Confidence 34678999999998 69999999999999999999998763 68999999999999999999999999999999999
Q ss_pred eecCC
Q 029496 96 IGTNI 100 (192)
Q Consensus 96 ~~~~~ 100 (192)
++...
T Consensus 348 s~~~~ 352 (481)
T TIGR01649 348 SKQQN 352 (481)
T ss_pred ccccc
Confidence 86643
No 43
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=99.48 E-value=1.5e-13 Score=108.03 Aligned_cols=86 Identities=27% Similarity=0.464 Sum_probs=80.3
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHhhhCCCeEEEEEEeCC-CCCcceEEEEEEcCHHHHHHHHHHhCCCccCCceEEEEE
Q 029496 17 IESGTKLYISNLEYGVSNEDIKELFSEVGELKRCSVHFDR-SGRSKGTAEVVLTRRADAIAAVKRYNNVQLDGKPMKIEI 95 (192)
Q Consensus 17 ~~~~~~l~V~nL~~~~te~~L~~~f~~~G~i~~v~i~~~~-tg~~~g~afV~f~~~~~a~~Ai~~l~~~~l~g~~i~V~~ 95 (192)
.+..+.|.|.-||..+|+++|+.+|...|+|+.|++++|+ +|++.||+||.|-++++|++||..||+..|..+.|+|.+
T Consensus 38 ~~skTNLIvNYLPQ~MTqdE~rSLF~SiGeiEScKLvRDKitGqSLGYGFVNYv~p~DAe~AintlNGLrLQ~KTIKVSy 117 (360)
T KOG0145|consen 38 DESKTNLIVNYLPQNMTQDELRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYVRPKDAEKAINTLNGLRLQNKTIKVSY 117 (360)
T ss_pred CcccceeeeeecccccCHHHHHHHhhcccceeeeeeeeccccccccccceeeecChHHHHHHHhhhcceeeccceEEEEe
Confidence 4455688899999999999999999999999999999999 999999999999999999999999999999999999999
Q ss_pred eecCCCC
Q 029496 96 IGTNIGP 102 (192)
Q Consensus 96 ~~~~~~~ 102 (192)
+++....
T Consensus 118 ARPSs~~ 124 (360)
T KOG0145|consen 118 ARPSSDS 124 (360)
T ss_pred ccCChhh
Confidence 9876543
No 44
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=99.46 E-value=1.1e-13 Score=109.26 Aligned_cols=88 Identities=23% Similarity=0.323 Sum_probs=82.9
Q ss_pred CCCCCCCEEEEcCCCCCCCHHHHHHHhhhCCCeEEEEEEeCC-CCCcceEEEEEEcCHHHHHHHHHHhCCCccCCceEEE
Q 029496 15 SSIESGTKLYISNLEYGVSNEDIKELFSEVGELKRCSVHFDR-SGRSKGTAEVVLTRRADAIAAVKRYNNVQLDGKPMKI 93 (192)
Q Consensus 15 ~~~~~~~~l~V~nL~~~~te~~L~~~f~~~G~i~~v~i~~~~-tg~~~g~afV~f~~~~~a~~Ai~~l~~~~l~g~~i~V 93 (192)
..-.++|.|||-.||.+..+.+|..+|-.||.|++.++..|+ |+.+|+|+||.|+++.++++||..||++.|.-++|+|
T Consensus 280 reGPeGCNlFIYHLPQEFgDaEliQmF~PFGhivSaKVFvDRATNQSKCFGFVSfDNp~SaQaAIqAMNGFQIGMKRLKV 359 (371)
T KOG0146|consen 280 REGPEGCNLFIYHLPQEFGDAELIQMFLPFGHIVSAKVFVDRATNQSKCFGFVSFDNPASAQAAIQAMNGFQIGMKRLKV 359 (371)
T ss_pred hcCCCcceEEEEeCchhhccHHHHHHhccccceeeeeeeehhccccccceeeEecCCchhHHHHHHHhcchhhhhhhhhh
Confidence 345688999999999999999999999999999999999999 9999999999999999999999999999999999999
Q ss_pred EEeecCCCC
Q 029496 94 EIIGTNIGP 102 (192)
Q Consensus 94 ~~~~~~~~~ 102 (192)
.+.+++...
T Consensus 360 QLKRPkdan 368 (371)
T KOG0146|consen 360 QLKRPKDAN 368 (371)
T ss_pred hhcCccccC
Confidence 999886653
No 45
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=99.45 E-value=9.8e-14 Score=115.50 Aligned_cols=87 Identities=26% Similarity=0.504 Sum_probs=79.2
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHhhhCCCeEEEEEEeCCCCCcceEEEEEEcCHHHHHHHHHHhCCCc-cCC--ceEEEE
Q 029496 18 ESGTKLYISNLEYGVSNEDIKELFSEVGELKRCSVHFDRSGRSKGTAEVVLTRRADAIAAVKRYNNVQ-LDG--KPMKIE 94 (192)
Q Consensus 18 ~~~~~l~V~nL~~~~te~~L~~~f~~~G~i~~v~i~~~~tg~~~g~afV~f~~~~~a~~Ai~~l~~~~-l~g--~~i~V~ 94 (192)
.+..+|||+-|+..+||.+++++|.+||.|++|.|.+|..+.++|||||+|.+.+.|..||+.||+.. +.| .+|.|+
T Consensus 122 ~~e~KLFvg~lsK~~te~evr~iFs~fG~Ied~~ilrd~~~~sRGcaFV~fstke~A~~Aika~ng~~tmeGcs~PLVVk 201 (510)
T KOG0144|consen 122 VEERKLFVGMLSKQCTENEVREIFSRFGHIEDCYILRDPDGLSRGCAFVKFSTKEMAVAAIKALNGTQTMEGCSQPLVVK 201 (510)
T ss_pred ccchhhhhhhccccccHHHHHHHHHhhCccchhhheecccccccceeEEEEehHHHHHHHHHhhccceeeccCCCceEEE
Confidence 45789999999999999999999999999999999999999999999999999999999999999875 555 689999
Q ss_pred EeecCCCCCC
Q 029496 95 IIGTNIGPPA 104 (192)
Q Consensus 95 ~~~~~~~~~~ 104 (192)
++.++.+...
T Consensus 202 FADtqkdk~~ 211 (510)
T KOG0144|consen 202 FADTQKDKDG 211 (510)
T ss_pred ecccCCCchH
Confidence 9988766544
No 46
>KOG0116 consensus RasGAP SH3 binding protein rasputin, contains NTF2 and RRM domains [Signal transduction mechanisms]
Probab=99.45 E-value=1e-12 Score=111.60 Aligned_cols=82 Identities=16% Similarity=0.360 Sum_probs=70.6
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHhhhCCCeEEEEEEeCC-CCCcceEEEEEEcCHHHHHHHHHHhCCCccCCceEEEEEee
Q 029496 19 SGTKLYISNLEYGVSNEDIKELFSEVGELKRCSVHFDR-SGRSKGTAEVVLTRRADAIAAVKRYNNVQLDGKPMKIEIIG 97 (192)
Q Consensus 19 ~~~~l~V~nL~~~~te~~L~~~f~~~G~i~~v~i~~~~-tg~~~g~afV~f~~~~~a~~Ai~~l~~~~l~g~~i~V~~~~ 97 (192)
...+|||.|||.++++++|+++|.+||.|+...|..-. .++..+|+||+|.+.++++.||++ +-..|++++|.|+..+
T Consensus 287 ~~~~i~V~nlP~da~~~~l~~~Fk~FG~Ik~~~I~vr~~~~~~~~fgFV~f~~~~~~~~~i~A-sp~~ig~~kl~Veek~ 365 (419)
T KOG0116|consen 287 DGLGIFVKNLPPDATPAELEEVFKQFGPIKEGGIQVRSPGGKNPCFGFVEFENAAAVQNAIEA-SPLEIGGRKLNVEEKR 365 (419)
T ss_pred cccceEeecCCCCCCHHHHHHHHhhcccccccceEEeccCCCcCceEEEEEeecchhhhhhhc-CccccCCeeEEEEecc
Confidence 34569999999999999999999999999988776644 455559999999999999999986 6888999999999987
Q ss_pred cCCC
Q 029496 98 TNIG 101 (192)
Q Consensus 98 ~~~~ 101 (192)
+...
T Consensus 366 ~~~~ 369 (419)
T KOG0116|consen 366 PGFR 369 (419)
T ss_pred cccc
Confidence 6444
No 47
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=99.44 E-value=2.4e-13 Score=113.25 Aligned_cols=85 Identities=26% Similarity=0.440 Sum_probs=75.5
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHhhhCCCeEEEEEEeCC-CCCcceEEEEEEcCHHHHHHHHHHhCCCc-cCC--ceEEE
Q 029496 18 ESGTKLYISNLEYGVSNEDIKELFSEVGELKRCSVHFDR-SGRSKGTAEVVLTRRADAIAAVKRYNNVQ-LDG--KPMKI 93 (192)
Q Consensus 18 ~~~~~l~V~nL~~~~te~~L~~~f~~~G~i~~v~i~~~~-tg~~~g~afV~f~~~~~a~~Ai~~l~~~~-l~g--~~i~V 93 (192)
.+..++||+-||..++|.||+.+|++||.|.+|.|++|+ ++.++|||||.|.+.++|.+|+.+||+.. |-| .+|.|
T Consensus 32 ~~~vKlfVgqIprt~sE~dlr~lFe~yg~V~einl~kDk~t~~s~gcCFv~~~trk~a~~a~~Alhn~ktlpG~~~pvqv 111 (510)
T KOG0144|consen 32 GSAVKLFVGQIPRTASEKDLRELFEKYGNVYEINLIKDKSTGQSKGCCFVKYYTRKEADEAINALHNQKTLPGMHHPVQV 111 (510)
T ss_pred chhhhheeccCCccccHHHHHHHHHHhCceeEEEeecccccCcccceEEEEeccHHHHHHHHHHhhcccccCCCCcceee
Confidence 344689999999999999999999999999999999999 99999999999999999999999998865 554 57888
Q ss_pred EEeecCCCC
Q 029496 94 EIIGTNIGP 102 (192)
Q Consensus 94 ~~~~~~~~~ 102 (192)
+++......
T Consensus 112 k~Ad~E~er 120 (510)
T KOG0144|consen 112 KYADGERER 120 (510)
T ss_pred cccchhhhc
Confidence 888665443
No 48
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=99.44 E-value=5.4e-13 Score=116.61 Aligned_cols=75 Identities=19% Similarity=0.178 Sum_probs=68.3
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHhhhCCCeEEEEEEeCCCCCcceEEEEEEcCHHHHHHHHHHh--CCCccCCceEEEEEe
Q 029496 19 SGTKLYISNLEYGVSNEDIKELFSEVGELKRCSVHFDRSGRSKGTAEVVLTRRADAIAAVKRY--NNVQLDGKPMKIEII 96 (192)
Q Consensus 19 ~~~~l~V~nL~~~~te~~L~~~f~~~G~i~~v~i~~~~tg~~~g~afV~f~~~~~a~~Ai~~l--~~~~l~g~~i~V~~~ 96 (192)
++++|||+|||+.+++++|+++|++||.|.+|.|+.+ ++||||+|.+.++|++||+.| ++..|.|+.|.|+++
T Consensus 1 ps~vv~V~nLp~~~te~~L~~~f~~fG~V~~v~i~~~-----k~~afVef~~~e~A~~Ai~~~~~~~~~l~g~~l~v~~s 75 (481)
T TIGR01649 1 PSPVVHVRNLPQDVVEADLVEALIPFGPVSYVMMLPG-----KRQALVEFEDEESAKACVNFATSVPIYIRGQPAFFNYS 75 (481)
T ss_pred CccEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEECC-----CCEEEEEeCchHHHHHHHHHhhcCCceEcCeEEEEEec
Confidence 4679999999999999999999999999999998853 679999999999999999865 678899999999998
Q ss_pred ec
Q 029496 97 GT 98 (192)
Q Consensus 97 ~~ 98 (192)
..
T Consensus 76 ~~ 77 (481)
T TIGR01649 76 TS 77 (481)
T ss_pred CC
Confidence 54
No 49
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=99.43 E-value=3e-13 Score=113.07 Aligned_cols=79 Identities=29% Similarity=0.445 Sum_probs=71.9
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHhhhCCCeEEEEEEeCCCCCcceEEEEEEcCHHHHHHHHHHhCCCccCCceEEEEE
Q 029496 16 SIESGTKLYISNLEYGVSNEDIKELFSEVGELKRCSVHFDRSGRSKGTAEVVLTRRADAIAAVKRYNNVQLDGKPMKIEI 95 (192)
Q Consensus 16 ~~~~~~~l~V~nL~~~~te~~L~~~f~~~G~i~~v~i~~~~tg~~~g~afV~f~~~~~a~~Ai~~l~~~~l~g~~i~V~~ 95 (192)
.+..-+.|||.||+.++||+.|+++|++||.|.+|+.++ .||||.|.+.++|.+|++.+|+.+|+|..|.|.+
T Consensus 255 ~ms~VKvLYVRNL~~~tTeE~lk~~F~~~G~veRVkk~r-------DYaFVHf~eR~davkAm~~~ngkeldG~~iEvtL 327 (506)
T KOG0117|consen 255 TMSKVKVLYVRNLMESTTEETLKKLFNEFGKVERVKKPR-------DYAFVHFAEREDAVKAMKETNGKELDGSPIEVTL 327 (506)
T ss_pred hhhheeeeeeeccchhhhHHHHHHHHHhccceEEeeccc-------ceeEEeecchHHHHHHHHHhcCceecCceEEEEe
Confidence 445567999999999999999999999999999998874 4999999999999999999999999999999999
Q ss_pred eecCCC
Q 029496 96 IGTNIG 101 (192)
Q Consensus 96 ~~~~~~ 101 (192)
+++...
T Consensus 328 AKP~~k 333 (506)
T KOG0117|consen 328 AKPVDK 333 (506)
T ss_pred cCChhh
Confidence 987543
No 50
>KOG0108 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA15 [RNA processing and modification]
Probab=99.43 E-value=4.2e-13 Score=114.51 Aligned_cols=81 Identities=22% Similarity=0.478 Sum_probs=77.8
Q ss_pred CEEEEcCCCCCCCHHHHHHHhhhCCCeEEEEEEeCC-CCCcceEEEEEEcCHHHHHHHHHHhCCCccCCceEEEEEeecC
Q 029496 21 TKLYISNLEYGVSNEDIKELFSEVGELKRCSVHFDR-SGRSKGTAEVVLTRRADAIAAVKRYNNVQLDGKPMKIEIIGTN 99 (192)
Q Consensus 21 ~~l~V~nL~~~~te~~L~~~f~~~G~i~~v~i~~~~-tg~~~g~afV~f~~~~~a~~Ai~~l~~~~l~g~~i~V~~~~~~ 99 (192)
+.|||+|+|+++++++|..+|+..|.|..+++++|+ ||+++||+|++|.+.++++.|++.|++.++.|++|+|.++...
T Consensus 19 ~~v~vgnip~~~se~~l~~~~~~~g~v~s~~~v~D~~tG~~~G~~f~~~~~~~~~~~a~~~lNg~~~~gr~l~v~~~~~~ 98 (435)
T KOG0108|consen 19 SSVFVGNIPYEGSEEQLLSIFSGVGPVLSFRLVYDRETGKPKGFGFCEFTDEETAERAIRNLNGAEFNGRKLRVNYASNR 98 (435)
T ss_pred cceEecCCCCcccHHHHHHHHhccCccceeeecccccCCCcCceeeEecCchhhHHHHHHhcCCcccCCceEEeeccccc
Confidence 899999999999999999999999999999999999 9999999999999999999999999999999999999998764
Q ss_pred CC
Q 029496 100 IG 101 (192)
Q Consensus 100 ~~ 101 (192)
..
T Consensus 99 ~~ 100 (435)
T KOG0108|consen 99 KN 100 (435)
T ss_pred ch
Confidence 44
No 51
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=99.41 E-value=2.1e-12 Score=101.71 Aligned_cols=83 Identities=19% Similarity=0.284 Sum_probs=78.2
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHhhhCCCeEEEEEEeCC-CCCcceEEEEEEcCHHHHHHHHHHhCCCccCCceEEEEE
Q 029496 17 IESGTKLYISNLEYGVSNEDIKELFSEVGELKRCSVHFDR-SGRSKGTAEVVLTRRADAIAAVKRYNNVQLDGKPMKIEI 95 (192)
Q Consensus 17 ~~~~~~l~V~nL~~~~te~~L~~~f~~~G~i~~v~i~~~~-tg~~~g~afV~f~~~~~a~~Ai~~l~~~~l~g~~i~V~~ 95 (192)
...+..|||-||.++++|..|+.+|.+||.|..|+|++|. +.+++||+||++.+-++|-.||..||+..+.++.|.|.+
T Consensus 275 ~~~g~ciFvYNLspd~de~~LWQlFgpFGAv~nVKvirD~ttnkCKGfgFVtMtNYdEAamAi~sLNGy~lg~rvLQVsF 354 (360)
T KOG0145|consen 275 PGGGWCIFVYNLSPDADESILWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQVSF 354 (360)
T ss_pred CCCeeEEEEEecCCCchHhHHHHHhCcccceeeEEEEecCCcccccceeEEEecchHHHHHHHHHhcCccccceEEEEEE
Confidence 3456899999999999999999999999999999999999 899999999999999999999999999999999999999
Q ss_pred eecC
Q 029496 96 IGTN 99 (192)
Q Consensus 96 ~~~~ 99 (192)
...+
T Consensus 355 Ktnk 358 (360)
T KOG0145|consen 355 KTNK 358 (360)
T ss_pred ecCC
Confidence 8754
No 52
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=99.41 E-value=1e-12 Score=112.30 Aligned_cols=86 Identities=31% Similarity=0.520 Sum_probs=76.2
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHhhhCCCeEEEEEEeCC-CCCcceEEEEEEcCHHHHHHHHHHh-----CC-CccCC
Q 029496 16 SIESGTKLYISNLEYGVSNEDIKELFSEVGELKRCSVHFDR-SGRSKGTAEVVLTRRADAIAAVKRY-----NN-VQLDG 88 (192)
Q Consensus 16 ~~~~~~~l~V~nL~~~~te~~L~~~f~~~G~i~~v~i~~~~-tg~~~g~afV~f~~~~~a~~Ai~~l-----~~-~~l~g 88 (192)
+...+.+|||.|||+++|+++|+++|++||+|.++.|+.++ |+.++|+|||.|.+..+|+.||+.. .+ ..|+|
T Consensus 288 n~~~~~tVFvRNL~fD~tEEel~~~fskFG~v~ya~iV~~k~T~~skGtAFv~Fkt~~~~~~ci~~Aspa~e~g~~ll~G 367 (678)
T KOG0127|consen 288 NITEGKTVFVRNLPFDTTEEELKEHFSKFGEVKYAIIVKDKDTGHSKGTAFVKFKTQIAAQNCIEAASPASEDGSVLLDG 367 (678)
T ss_pred cccccceEEEecCCccccHHHHHHHHHhhccceeEEEEeccCCCCcccceEEEeccHHHHHHHHHhcCccCCCceEEEec
Confidence 33455899999999999999999999999999999999999 9999999999999999999999876 22 45889
Q ss_pred ceEEEEEeecCCC
Q 029496 89 KPMKIEIIGTNIG 101 (192)
Q Consensus 89 ~~i~V~~~~~~~~ 101 (192)
+.|.|.++.+...
T Consensus 368 R~Lkv~~Av~Rke 380 (678)
T KOG0127|consen 368 RLLKVTLAVTRKE 380 (678)
T ss_pred cEEeeeeccchHH
Confidence 9999999866443
No 53
>smart00361 RRM_1 RNA recognition motif.
Probab=99.36 E-value=4.6e-12 Score=82.32 Aligned_cols=61 Identities=28% Similarity=0.486 Sum_probs=54.6
Q ss_pred HHHHHHHhh----hCCCeEEEE-EEeCC-C--CCcceEEEEEEcCHHHHHHHHHHhCCCccCCceEEEE
Q 029496 34 NEDIKELFS----EVGELKRCS-VHFDR-S--GRSKGTAEVVLTRRADAIAAVKRYNNVQLDGKPMKIE 94 (192)
Q Consensus 34 e~~L~~~f~----~~G~i~~v~-i~~~~-t--g~~~g~afV~f~~~~~a~~Ai~~l~~~~l~g~~i~V~ 94 (192)
+++|+++|. +||.|.+|. |+.++ + +.++||+||+|.+.++|++|++.||+..+.|+.|+++
T Consensus 2 ~~~l~~~~~~~~~~fG~v~~v~~v~~~~~~~~~~~rG~~fV~f~~~~dA~~A~~~l~g~~~~gr~l~~~ 70 (70)
T smart00361 2 DEDFEREFSEEEEYFGEVGKINKIYIDNVGYENHKRGNVYITFERSEDAARAIVDLNGRYFDGRTVKAE 70 (70)
T ss_pred chhHHHHHHHHHHhcCCeeEEEEEEeCCCCCCCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEeC
Confidence 578888998 999999995 66665 5 8899999999999999999999999999999999863
No 54
>KOG0415 consensus Predicted peptidyl prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.35 E-value=1.5e-12 Score=106.33 Aligned_cols=84 Identities=21% Similarity=0.362 Sum_probs=78.9
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHhhhCCCeEEEEEEeCC-CCCcceEEEEEEcCHHHHHHHHHHhCCCccCCceEEEEE
Q 029496 17 IESGTKLYISNLEYGVSNEDIKELFSEVGELKRCSVHFDR-SGRSKGTAEVVLTRRADAIAAVKRYNNVQLDGKPMKIEI 95 (192)
Q Consensus 17 ~~~~~~l~V~nL~~~~te~~L~~~f~~~G~i~~v~i~~~~-tg~~~g~afV~f~~~~~a~~Ai~~l~~~~l~g~~i~V~~ 95 (192)
.++...|||..|.+.+|+++|+-+|+.||.|..|.|+.|+ ||.+..||||+|++.+++++|.-+|++..|+++.|+|.+
T Consensus 236 ~PPeNVLFVCKLNPVTtDeDLeiIFSrFG~i~sceVIRD~ktgdsLqyaFiEFen~escE~AyFKMdNvLIDDrRIHVDF 315 (479)
T KOG0415|consen 236 KPPENVLFVCKLNPVTTDEDLEIIFSRFGKIVSCEVIRDRKTGDSLQYAFIEFENKESCEQAYFKMDNVLIDDRRIHVDF 315 (479)
T ss_pred CCCcceEEEEecCCcccccchhhHHhhcccceeeeEEecccccchhheeeeeecchhhHHHHHhhhcceeeccceEEeeh
Confidence 3567899999999999999999999999999999999999 999999999999999999999999999999999999999
Q ss_pred eecCC
Q 029496 96 IGTNI 100 (192)
Q Consensus 96 ~~~~~ 100 (192)
+.+-.
T Consensus 316 SQSVs 320 (479)
T KOG0415|consen 316 SQSVS 320 (479)
T ss_pred hhhhh
Confidence 86533
No 55
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=99.35 E-value=6.1e-12 Score=78.03 Aligned_cols=56 Identities=30% Similarity=0.539 Sum_probs=50.5
Q ss_pred HHHHhhhCCCeEEEEEEeCCCCCcceEEEEEEcCHHHHHHHHHHhCCCccCCceEEEEEe
Q 029496 37 IKELFSEVGELKRCSVHFDRSGRSKGTAEVVLTRRADAIAAVKRYNNVQLDGKPMKIEII 96 (192)
Q Consensus 37 L~~~f~~~G~i~~v~i~~~~tg~~~g~afV~f~~~~~a~~Ai~~l~~~~l~g~~i~V~~~ 96 (192)
|+++|++||.|..+.+..+. +++|||+|.+.++|+.|++.||+..+.|++|+|+++
T Consensus 1 L~~~f~~fG~V~~i~~~~~~----~~~a~V~f~~~~~A~~a~~~l~~~~~~g~~l~V~~a 56 (56)
T PF13893_consen 1 LYKLFSKFGEVKKIKIFKKK----RGFAFVEFASVEDAQKAIEQLNGRQFNGRPLKVSYA 56 (56)
T ss_dssp HHHHHTTTS-EEEEEEETTS----TTEEEEEESSHHHHHHHHHHHTTSEETTEEEEEEEE
T ss_pred ChHHhCCcccEEEEEEEeCC----CCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEC
Confidence 68899999999999987553 589999999999999999999999999999999985
No 56
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=99.33 E-value=2.1e-12 Score=102.96 Aligned_cols=74 Identities=20% Similarity=0.405 Sum_probs=69.3
Q ss_pred CEEEEcCCCCCCCHHHHHHHhhhCCCeEEEEEEeCCCCCcceEEEEEEcCHHHHHHHHHHhCCCccCCceEEEEEeecCC
Q 029496 21 TKLYISNLEYGVSNEDIKELFSEVGELKRCSVHFDRSGRSKGTAEVVLTRRADAIAAVKRYNNVQLDGKPMKIEIIGTNI 100 (192)
Q Consensus 21 ~~l~V~nL~~~~te~~L~~~f~~~G~i~~v~i~~~~tg~~~g~afV~f~~~~~a~~Ai~~l~~~~l~g~~i~V~~~~~~~ 100 (192)
.+|||+|||..+++.+|+.+|++||.|.+|+|+++ |+||..++...++.||..|++.+|+|..|+|+-++.+.
T Consensus 3 ~KLFIGNLp~~~~~~elr~lFe~ygkVlECDIvKN-------YgFVHiEdktaaedairNLhgYtLhg~nInVeaSksKs 75 (346)
T KOG0109|consen 3 VKLFIGNLPREATEQELRSLFEQYGKVLECDIVKN-------YGFVHIEDKTAAEDAIRNLHGYTLHGVNINVEASKSKS 75 (346)
T ss_pred cchhccCCCcccchHHHHHHHHhhCceEeeeeecc-------cceEEeecccccHHHHhhcccceecceEEEEEeccccC
Confidence 57999999999999999999999999999999954 99999999999999999999999999999999988763
Q ss_pred C
Q 029496 101 G 101 (192)
Q Consensus 101 ~ 101 (192)
.
T Consensus 76 k 76 (346)
T KOG0109|consen 76 K 76 (346)
T ss_pred C
Confidence 3
No 57
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=99.33 E-value=5.1e-12 Score=108.11 Aligned_cols=86 Identities=23% Similarity=0.373 Sum_probs=78.8
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHhhhCCCeEEEEEEeCCCCCcceEEEEEEcCHHHHHHHHHHhCCCccCCceEEEEEeec
Q 029496 19 SGTKLYISNLEYGVSNEDIKELFSEVGELKRCSVHFDRSGRSKGTAEVVLTRRADAIAAVKRYNNVQLDGKPMKIEIIGT 98 (192)
Q Consensus 19 ~~~~l~V~nL~~~~te~~L~~~f~~~G~i~~v~i~~~~tg~~~g~afV~f~~~~~a~~Ai~~l~~~~l~g~~i~V~~~~~ 98 (192)
+..+|.|.|||+.|...+|+.+|+.||.|.+|.|+....++.+|||||.|....+|..|++.||+..|+|++|-|.|+.+
T Consensus 116 ~k~rLIIRNLPf~~k~~dLk~vFs~~G~V~Ei~IP~k~dgklcGFaFV~fk~~~dA~~Al~~~N~~~i~gR~VAVDWAV~ 195 (678)
T KOG0127|consen 116 PKWRLIIRNLPFKCKKPDLKNVFSNFGKVVEIVIPRKKDGKLCGFAFVQFKEKKDAEKALEFFNGNKIDGRPVAVDWAVD 195 (678)
T ss_pred ccceEEeecCCcccCcHHHHHHHhhcceEEEEEcccCCCCCccceEEEEEeeHHHHHHHHHhccCceecCceeEEeeecc
Confidence 36799999999999999999999999999999999777777789999999999999999999999999999999999977
Q ss_pred CCCCCC
Q 029496 99 NIGPPA 104 (192)
Q Consensus 99 ~~~~~~ 104 (192)
+.....
T Consensus 196 Kd~ye~ 201 (678)
T KOG0127|consen 196 KDTYED 201 (678)
T ss_pred cccccc
Confidence 655433
No 58
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=99.32 E-value=1.2e-12 Score=107.21 Aligned_cols=75 Identities=23% Similarity=0.453 Sum_probs=73.1
Q ss_pred CCEEEEcCCCCCCCHHHHHHHhhhCCCeEEEEEEeCC-CCCcceEEEEEEcCHHHHHHHHHHhCCCccCCceEEEE
Q 029496 20 GTKLYISNLEYGVSNEDIKELFSEVGELKRCSVHFDR-SGRSKGTAEVVLTRRADAIAAVKRYNNVQLDGKPMKIE 94 (192)
Q Consensus 20 ~~~l~V~nL~~~~te~~L~~~f~~~G~i~~v~i~~~~-tg~~~g~afV~f~~~~~a~~Ai~~l~~~~l~g~~i~V~ 94 (192)
-|+|||+.+.+.+.|+.|+..|..||+|++|.+..|+ |+++++||||+|+-++.|+-|++.||+..+.|+.|+|-
T Consensus 113 McRvYVGSIsfEl~EDtiR~AF~PFGPIKSInMSWDp~T~kHKgFAFVEYEvPEaAqLAlEqMNg~mlGGRNiKVg 188 (544)
T KOG0124|consen 113 MCRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVG 188 (544)
T ss_pred hHheeeeeeEEEechHHHHhhccCCCCcceeecccccccccccceEEEEEeCcHHHHHHHHHhccccccCcccccc
Confidence 4899999999999999999999999999999999999 99999999999999999999999999999999999986
No 59
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=99.32 E-value=2.9e-12 Score=109.55 Aligned_cols=84 Identities=23% Similarity=0.549 Sum_probs=78.8
Q ss_pred CEEEEcCCCCCCCHHHHHHHhhhCCCeEEEEEEeCC-CCCcceEEEEEEcCHHHHHHHHHHhCCCccCCceEEEEEeecC
Q 029496 21 TKLYISNLEYGVSNEDIKELFSEVGELKRCSVHFDR-SGRSKGTAEVVLTRRADAIAAVKRYNNVQLDGKPMKIEIIGTN 99 (192)
Q Consensus 21 ~~l~V~nL~~~~te~~L~~~f~~~G~i~~v~i~~~~-tg~~~g~afV~f~~~~~a~~Ai~~l~~~~l~g~~i~V~~~~~~ 99 (192)
.+|||+||+.++++++|+.+|+.||.|..|.+..|. ||.++||+||+|.+.++|.+|++.||+++|-|+.|+|.....+
T Consensus 279 ~rl~vgnLHfNite~~lr~ifepfg~Ie~v~l~~d~~tG~skgfGfi~f~~~~~ar~a~e~lngfelAGr~ikV~~v~~r 358 (549)
T KOG0147|consen 279 RRLYVGNLHFNITEDMLRGIFEPFGKIENVQLTKDSETGRSKGFGFITFVNKEDARKALEQLNGFELAGRLIKVSVVTER 358 (549)
T ss_pred hhhhhcccccCchHHHHhhhccCcccceeeeeccccccccccCcceEEEecHHHHHHHHHHhccceecCceEEEEEeeee
Confidence 349999999999999999999999999999999998 9999999999999999999999999999999999999998876
Q ss_pred CCCCC
Q 029496 100 IGPPA 104 (192)
Q Consensus 100 ~~~~~ 104 (192)
.....
T Consensus 359 ~~~~~ 363 (549)
T KOG0147|consen 359 VDTKE 363 (549)
T ss_pred ccccc
Confidence 66554
No 60
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=99.26 E-value=1.6e-11 Score=91.89 Aligned_cols=90 Identities=21% Similarity=0.288 Sum_probs=80.9
Q ss_pred ccCCCCCCCCEEEEcCCCCCCCHHHHHHHhhhCCCeEE-EEEEeCC-CCCcceEEEEEEcCHHHHHHHHHHhCCCccCCc
Q 029496 12 ARSSSIESGTKLYISNLEYGVSNEDIKELFSEVGELKR-CSVHFDR-SGRSKGTAEVVLTRRADAIAAVKRYNNVQLDGK 89 (192)
Q Consensus 12 ~~~~~~~~~~~l~V~nL~~~~te~~L~~~f~~~G~i~~-v~i~~~~-tg~~~g~afV~f~~~~~a~~Ai~~l~~~~l~g~ 89 (192)
....+.+.+..|||+||.++++|..|.+.|+.||.|.. -.++++. |+.+++|+||.|.+.+.+.+|+..+++..+..+
T Consensus 88 ~~~~nl~vganlfvgNLd~~vDe~~L~dtFsafG~l~~~P~i~rd~~tg~~~~~g~i~~~sfeasd~ai~s~ngq~l~nr 167 (203)
T KOG0131|consen 88 AHQKNLDVGANLFVGNLDPEVDEKLLYDTFSAFGVLISPPKIMRDPDTGNPKGFGFINYASFEASDAAIGSMNGQYLCNR 167 (203)
T ss_pred cccccccccccccccccCcchhHHHHHHHHHhccccccCCcccccccCCCCCCCeEEechhHHHHHHHHHHhccchhcCC
Confidence 34467777899999999999999999999999998854 4788888 899999999999999999999999999999999
Q ss_pred eEEEEEeecCCC
Q 029496 90 PMKIEIIGTNIG 101 (192)
Q Consensus 90 ~i~V~~~~~~~~ 101 (192)
+|+|.++..+..
T Consensus 168 ~itv~ya~k~~~ 179 (203)
T KOG0131|consen 168 PITVSYAFKKDT 179 (203)
T ss_pred ceEEEEEEecCC
Confidence 999999976544
No 61
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=99.25 E-value=1.1e-11 Score=98.86 Aligned_cols=82 Identities=23% Similarity=0.458 Sum_probs=74.5
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHhhhCCCeEEEEEEeCCCCCcceEEEEEEcCHHHHHHHHHHhCCCccCCceEEEEE
Q 029496 16 SIESGTKLYISNLEYGVSNEDIKELFSEVGELKRCSVHFDRSGRSKGTAEVVLTRRADAIAAVKRYNNVQLDGKPMKIEI 95 (192)
Q Consensus 16 ~~~~~~~l~V~nL~~~~te~~L~~~f~~~G~i~~v~i~~~~tg~~~g~afV~f~~~~~a~~Ai~~l~~~~l~g~~i~V~~ 95 (192)
.+...++|+|+||.+.++.++|+..|.+||.|.+++|+ ++|+||.|+-.++|..|++.|++.+++|++++|++
T Consensus 74 Ksk~stkl~vgNis~tctn~ElRa~fe~ygpviecdiv-------kdy~fvh~d~~eda~~air~l~~~~~~gk~m~vq~ 146 (346)
T KOG0109|consen 74 KSKASTKLHVGNISPTCTNQELRAKFEKYGPVIECDIV-------KDYAFVHFDRAEDAVEAIRGLDNTEFQGKRMHVQL 146 (346)
T ss_pred cCCCccccccCCCCccccCHHHhhhhcccCCceeeeee-------cceeEEEEeeccchHHHHhcccccccccceeeeee
Confidence 34577899999999999999999999999999999998 45999999999999999999999999999999999
Q ss_pred eecCCCCCC
Q 029496 96 IGTNIGPPA 104 (192)
Q Consensus 96 ~~~~~~~~~ 104 (192)
++......+
T Consensus 147 stsrlrtap 155 (346)
T KOG0109|consen 147 STSRLRTAP 155 (346)
T ss_pred eccccccCC
Confidence 987655433
No 62
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=99.22 E-value=6.4e-11 Score=91.55 Aligned_cols=85 Identities=28% Similarity=0.490 Sum_probs=74.8
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHH----HhhhCCCeEEEEEEeCCCCCcceEEEEEEcCHHHHHHHHHHhCCCccCCceE
Q 029496 16 SIESGTKLYISNLEYGVSNEDIKE----LFSEVGELKRCSVHFDRSGRSKGTAEVVLTRRADAIAAVKRYNNVQLDGKPM 91 (192)
Q Consensus 16 ~~~~~~~l~V~nL~~~~te~~L~~----~f~~~G~i~~v~i~~~~tg~~~g~afV~f~~~~~a~~Ai~~l~~~~l~g~~i 91 (192)
..++..+|||.||++.+..++|+. +|++||.|..|... ++.+.+|-|||+|.+.+.|-.|+..|+++.+.|+.+
T Consensus 5 ~~~pn~TlYInnLnekI~~~elkrsL~~LFsqfG~ildI~a~--kt~KmRGQA~VvFk~~~~As~A~r~l~gfpFygK~m 82 (221)
T KOG4206|consen 5 SVNPNGTLYINNLNEKIKKDELKRSLYLLFSQFGKILDISAF--KTPKMRGQAFVVFKETEAASAALRALQGFPFYGKPM 82 (221)
T ss_pred ccCCCceEeehhccccccHHHHHHHHHHHHHhhCCeEEEEec--CCCCccCceEEEecChhHHHHHHHHhcCCcccCchh
Confidence 455666999999999999988776 99999999887665 467889999999999999999999999999999999
Q ss_pred EEEEeecCCCC
Q 029496 92 KIEIIGTNIGP 102 (192)
Q Consensus 92 ~V~~~~~~~~~ 102 (192)
+|+++..+..-
T Consensus 83 riqyA~s~sdi 93 (221)
T KOG4206|consen 83 RIQYAKSDSDI 93 (221)
T ss_pred heecccCccch
Confidence 99999876543
No 63
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.21 E-value=8.9e-11 Score=99.13 Aligned_cols=78 Identities=28% Similarity=0.497 Sum_probs=73.1
Q ss_pred EEEEcCCCCCCCHHHHHHHhhhCCCeEEEEEEeCCCCCcceEEEEEEcCHHHHHHHHHHhCCCccCCceEEEEEeecCCC
Q 029496 22 KLYISNLEYGVSNEDIKELFSEVGELKRCSVHFDRSGRSKGTAEVVLTRRADAIAAVKRYNNVQLDGKPMKIEIIGTNIG 101 (192)
Q Consensus 22 ~l~V~nL~~~~te~~L~~~f~~~G~i~~v~i~~~~tg~~~g~afV~f~~~~~a~~Ai~~l~~~~l~g~~i~V~~~~~~~~ 101 (192)
.|||.||++.++..+|+++|+.||+|.+|++..+.+| +++| ||+|++++.|++|++.||+..+.+++|.|-+......
T Consensus 78 ~~~i~nl~~~~~~~~~~d~f~~~g~ilS~kv~~~~~g-~kg~-FV~f~~e~~a~~ai~~~ng~ll~~kki~vg~~~~~~e 155 (369)
T KOG0123|consen 78 LVFIKNLDESIDNKSLYDTFSEFGNILSCKVATDENG-SKGY-FVQFESEESAKKAIEKLNGMLLNGKKIYVGLFERKEE 155 (369)
T ss_pred eeeecCCCcccCcHHHHHHHHhhcCeeEEEEEEcCCC-ceee-EEEeCCHHHHHHHHHHhcCcccCCCeeEEeeccchhh
Confidence 3999999999999999999999999999999999977 8999 9999999999999999999999999999988766444
No 64
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=99.20 E-value=6.9e-11 Score=103.78 Aligned_cols=75 Identities=13% Similarity=0.250 Sum_probs=61.7
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHhhhC------------CCeEEEEEEeCCCCCcceEEEEEEcCHHHHHHHHHHhCCC
Q 029496 17 IESGTKLYISNLEYGVSNEDIKELFSEV------------GELKRCSVHFDRSGRSKGTAEVVLTRRADAIAAVKRYNNV 84 (192)
Q Consensus 17 ~~~~~~l~V~nL~~~~te~~L~~~f~~~------------G~i~~v~i~~~~tg~~~g~afV~f~~~~~a~~Ai~~l~~~ 84 (192)
.....+|||+|||+.+|+++|+++|.+| ..|..+.+ .+.++||||+|.+.++|+.|| .|++.
T Consensus 172 ~~~~r~lyVgnLp~~~t~~~l~~~F~~~~~~~~~~~~~~~~~v~~~~~-----~~~kg~afVeF~~~e~A~~Al-~l~g~ 245 (509)
T TIGR01642 172 TRQARRLYVGGIPPEFVEEAVVDFFNDLMIATGYHKAEDGKHVSSVNI-----NKEKNFAFLEFRTVEEATFAM-ALDSI 245 (509)
T ss_pred CccccEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCCceEEEEE-----CCCCCEEEEEeCCHHHHhhhh-cCCCe
Confidence 3456799999999999999999999875 23344433 345789999999999999999 59999
Q ss_pred ccCCceEEEEEee
Q 029496 85 QLDGKPMKIEIIG 97 (192)
Q Consensus 85 ~l~g~~i~V~~~~ 97 (192)
.|.|+.|+|....
T Consensus 246 ~~~g~~l~v~r~~ 258 (509)
T TIGR01642 246 IYSNVFLKIRRPH 258 (509)
T ss_pred EeeCceeEecCcc
Confidence 9999999986543
No 65
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=99.17 E-value=6.7e-11 Score=93.57 Aligned_cols=89 Identities=26% Similarity=0.416 Sum_probs=78.3
Q ss_pred CCCCCCCCEEEEcCCCCCCCHHHHHHHhhhCCCeEEEEEEeCCCCCcceEEEEEEcCHHHHHHHHHHhCCCc-cC--Cce
Q 029496 14 SSSIESGTKLYISNLEYGVSNEDIKELFSEVGELKRCSVHFDRSGRSKGTAEVVLTRRADAIAAVKRYNNVQ-LD--GKP 90 (192)
Q Consensus 14 ~~~~~~~~~l~V~nL~~~~te~~L~~~f~~~G~i~~v~i~~~~tg~~~g~afV~f~~~~~a~~Ai~~l~~~~-l~--g~~ 90 (192)
.+-..+.++|||+-|...-.|+|++.+|..||.|.+|.+.+...+.+||+|||.|.+..+|+.||..||+.. +- ...
T Consensus 13 esrg~~drklfvgml~kqq~e~dvrrlf~pfG~~~e~tvlrg~dg~sKGCAFVKf~s~~eAqaAI~aLHgSqTmpGASSS 92 (371)
T KOG0146|consen 13 ESRGGDDRKLFVGMLNKQQSEDDVRRLFQPFGNIEECTVLRGPDGNSKGCAFVKFSSHAEAQAAINALHGSQTMPGASSS 92 (371)
T ss_pred ccCCccchhhhhhhhcccccHHHHHHHhcccCCcceeEEecCCCCCCCCceEEEeccchHHHHHHHHhcccccCCCCccc
Confidence 333447789999999999999999999999999999999998899999999999999999999999999976 33 368
Q ss_pred EEEEEeecCCCC
Q 029496 91 MKIEIIGTNIGP 102 (192)
Q Consensus 91 i~V~~~~~~~~~ 102 (192)
|.|+++.+..+.
T Consensus 93 LVVK~ADTdkER 104 (371)
T KOG0146|consen 93 LVVKFADTDKER 104 (371)
T ss_pred eEEEeccchHHH
Confidence 999999776543
No 66
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=99.16 E-value=8.5e-11 Score=98.46 Aligned_cols=78 Identities=24% Similarity=0.411 Sum_probs=70.6
Q ss_pred CCCCCCCEEEEcCCCCCCCHHHHHHHhhhCCCeEEEEEEeCCCCCcceEEEEEEcCHHHHHHHHHHhCCCccCCceEEEE
Q 029496 15 SSIESGTKLYISNLEYGVSNEDIKELFSEVGELKRCSVHFDRSGRSKGTAEVVLTRRADAIAAVKRYNNVQLDGKPMKIE 94 (192)
Q Consensus 15 ~~~~~~~~l~V~nL~~~~te~~L~~~f~~~G~i~~v~i~~~~tg~~~g~afV~f~~~~~a~~Ai~~l~~~~l~g~~i~V~ 94 (192)
....+.|+|||.|||.++||+.|++-|..||.|.++.|+. .+++++ .|.|.++++|+.|+..|++..|+|+.|+|.
T Consensus 531 gaarKa~qIiirNlP~dfTWqmlrDKfre~G~v~yadime--~GkskG--VVrF~s~edAEra~a~Mngs~l~Gr~I~V~ 606 (608)
T KOG4212|consen 531 GAARKACQIIIRNLPFDFTWQMLRDKFREIGHVLYADIME--NGKSKG--VVRFFSPEDAERACALMNGSRLDGRNIKVT 606 (608)
T ss_pred cccccccEEEEecCCccccHHHHHHHHHhccceehhhhhc--cCCccc--eEEecCHHHHHHHHHHhccCcccCceeeee
Confidence 4567889999999999999999999999999999998853 466666 899999999999999999999999999998
Q ss_pred Ee
Q 029496 95 II 96 (192)
Q Consensus 95 ~~ 96 (192)
+.
T Consensus 607 y~ 608 (608)
T KOG4212|consen 607 YF 608 (608)
T ss_pred eC
Confidence 73
No 67
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=99.15 E-value=5.3e-11 Score=97.75 Aligned_cols=82 Identities=27% Similarity=0.454 Sum_probs=74.6
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHhhhCCCeEEEEEEeCC-CCCcceEEEEEEcCHHHHHHHHHHhCCCccCCceEEEEEee
Q 029496 19 SGTKLYISNLEYGVSNEDIKELFSEVGELKRCSVHFDR-SGRSKGTAEVVLTRRADAIAAVKRYNNVQLDGKPMKIEIIG 97 (192)
Q Consensus 19 ~~~~l~V~nL~~~~te~~L~~~f~~~G~i~~v~i~~~~-tg~~~g~afV~f~~~~~a~~Ai~~l~~~~l~g~~i~V~~~~ 97 (192)
+.++|||++|+|+++++.|+++|.+||+|.+|.+++|+ ++.+++|+||+|++++...++|. ...+.|+++.|.+..+.
T Consensus 5 ~~~KlfiGgisw~ttee~Lr~yf~~~Gev~d~~vm~d~~t~rsrgFgfv~f~~~~~v~~vl~-~~~h~~dgr~ve~k~av 83 (311)
T KOG4205|consen 5 ESGKLFIGGLSWETTEESLREYFSQFGEVTDCVVMRDPSTGRSRGFGFVTFATPEGVDAVLN-ARTHKLDGRSVEPKRAV 83 (311)
T ss_pred CCcceeecCcCccccHHHHHHHhcccCceeeEEEeccCCCCCcccccceecCCCcchheeec-ccccccCCccccceecc
Confidence 78999999999999999999999999999999999999 99999999999999899888875 47788999999988876
Q ss_pred cCCC
Q 029496 98 TNIG 101 (192)
Q Consensus 98 ~~~~ 101 (192)
+...
T Consensus 84 ~r~~ 87 (311)
T KOG4205|consen 84 SRED 87 (311)
T ss_pred Cccc
Confidence 6543
No 68
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=99.13 E-value=1.6e-10 Score=99.56 Aligned_cols=80 Identities=23% Similarity=0.382 Sum_probs=74.7
Q ss_pred CCEEEEcCCCCCCCHHHHHHHhhhCCCeEEEEEEeCC-CCCcceEEEEEEcCHHHHHHHHHHhCCCccCCceEEEEEeec
Q 029496 20 GTKLYISNLEYGVSNEDIKELFSEVGELKRCSVHFDR-SGRSKGTAEVVLTRRADAIAAVKRYNNVQLDGKPMKIEIIGT 98 (192)
Q Consensus 20 ~~~l~V~nL~~~~te~~L~~~f~~~G~i~~v~i~~~~-tg~~~g~afV~f~~~~~a~~Ai~~l~~~~l~g~~i~V~~~~~ 98 (192)
+..|||.+|+..+...+|+.||++||.|+-.+|+.+. +.-.++|+||++.+.++|.+||+.||.++|.|+.|.|+.++.
T Consensus 405 gRNlWVSGLSstTRAtDLKnlFSKyGKVvGAKVVTNaRsPGaRCYGfVTMSts~eAtkCI~hLHrTELHGrmISVEkaKN 484 (940)
T KOG4661|consen 405 GRNLWVSGLSSTTRATDLKNLFSKYGKVVGAKVVTNARSPGARCYGFVTMSTSAEATKCIEHLHRTELHGRMISVEKAKN 484 (940)
T ss_pred ccceeeeccccchhhhHHHHHHHHhcceeceeeeecCCCCCcceeEEEEecchHHHHHHHHHhhhhhhcceeeeeeeccc
Confidence 4689999999999999999999999999999999987 777899999999999999999999999999999999998865
Q ss_pred C
Q 029496 99 N 99 (192)
Q Consensus 99 ~ 99 (192)
.
T Consensus 485 E 485 (940)
T KOG4661|consen 485 E 485 (940)
T ss_pred C
Confidence 4
No 69
>KOG4208 consensus Nucleolar RNA-binding protein NIFK [General function prediction only]
Probab=99.10 E-value=4.4e-10 Score=85.83 Aligned_cols=85 Identities=21% Similarity=0.307 Sum_probs=76.5
Q ss_pred CCCCCCCEEEEcCCCCCCCHHHHHHHhhhC-CCeEEEEEEeCC-CCCcceEEEEEEcCHHHHHHHHHHhCCCccCCceEE
Q 029496 15 SSIESGTKLYISNLEYGVSNEDIKELFSEV-GELKRCSVHFDR-SGRSKGTAEVVLTRRADAIAAVKRYNNVQLDGKPMK 92 (192)
Q Consensus 15 ~~~~~~~~l~V~nL~~~~te~~L~~~f~~~-G~i~~v~i~~~~-tg~~~g~afV~f~~~~~a~~Ai~~l~~~~l~g~~i~ 92 (192)
+......-+||..+|..+.+..|..+|.+| |.+..+++.+++ ||.+++||||+|++++.|+-|.+.||+..|.++.|.
T Consensus 44 p~~~~~g~~~~~~~p~g~~e~~~~~~~~q~~g~v~r~rlsRnkrTGNSKgYAFVEFEs~eVA~IaAETMNNYLl~e~lL~ 123 (214)
T KOG4208|consen 44 PEQEIEGVVYVDHIPHGFFETEILNYFRQFGGTVTRFRLSRNKRTGNSKGYAFVEFESEEVAKIAAETMNNYLLMEHLLE 123 (214)
T ss_pred CccCCccceeecccccchhHHHHhhhhhhcCCeeEEEEeecccccCCcCceEEEEeccHHHHHHHHHHhhhhhhhhheee
Confidence 344566788999999999999999999988 788888888888 999999999999999999999999999999999999
Q ss_pred EEEeecC
Q 029496 93 IEIIGTN 99 (192)
Q Consensus 93 V~~~~~~ 99 (192)
|.+..+.
T Consensus 124 c~vmppe 130 (214)
T KOG4208|consen 124 CHVMPPE 130 (214)
T ss_pred eEEeCch
Confidence 9887654
No 70
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=99.09 E-value=2.7e-10 Score=93.66 Aligned_cols=88 Identities=15% Similarity=0.269 Sum_probs=79.6
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHhhhCCCeEEEEEEeCC-CCCcceEEEEEEcCHHHHHHHHHHhCCCccCCceEEEEEe
Q 029496 18 ESGTKLYISNLEYGVSNEDIKELFSEVGELKRCSVHFDR-SGRSKGTAEVVLTRRADAIAAVKRYNNVQLDGKPMKIEII 96 (192)
Q Consensus 18 ~~~~~l~V~nL~~~~te~~L~~~f~~~G~i~~v~i~~~~-tg~~~g~afV~f~~~~~a~~Ai~~l~~~~l~g~~i~V~~~ 96 (192)
....+|||++||.++++++|+++|.+||.|..+.++.|. +.++++|+||+|.+++.+++++. ..-+.|+++.+.|..|
T Consensus 95 ~~tkkiFvGG~~~~~~e~~~r~yfe~~g~v~~~~~~~d~~~~~~rgFgfv~~~~e~sVdkv~~-~~f~~~~gk~vevkrA 173 (311)
T KOG4205|consen 95 LRTKKIFVGGLPPDTTEEDFKDYFEQFGKVADVVIMYDKTTSRPRGFGFVTFDSEDSVDKVTL-QKFHDFNGKKVEVKRA 173 (311)
T ss_pred cceeEEEecCcCCCCchHHHhhhhhccceeEeeEEeecccccccccceeeEeccccccceecc-cceeeecCceeeEeec
Confidence 356799999999999999999999999999999999999 89999999999999999998885 5888999999999999
Q ss_pred ecCCCCCCCC
Q 029496 97 GTNIGPPAAV 106 (192)
Q Consensus 97 ~~~~~~~~~~ 106 (192)
.++......+
T Consensus 174 ~pk~~~~~~~ 183 (311)
T KOG4205|consen 174 IPKEVMQSTK 183 (311)
T ss_pred cchhhccccc
Confidence 9887766553
No 71
>KOG0132 consensus RNA polymerase II C-terminal domain-binding protein RA4, contains RPR and RRM domains [RNA processing and modification; Transcription]
Probab=99.09 E-value=3.2e-10 Score=100.56 Aligned_cols=78 Identities=26% Similarity=0.408 Sum_probs=71.5
Q ss_pred CCEEEEcCCCCCCCHHHHHHHhhhCCCeEEEEEEeCCCCCcceEEEEEEcCHHHHHHHHHHhCCCccCCceEEEEEeecC
Q 029496 20 GTKLYISNLEYGVSNEDIKELFSEVGELKRCSVHFDRSGRSKGTAEVVLTRRADAIAAVKRYNNVQLDGKPMKIEIIGTN 99 (192)
Q Consensus 20 ~~~l~V~nL~~~~te~~L~~~f~~~G~i~~v~i~~~~tg~~~g~afV~f~~~~~a~~Ai~~l~~~~l~g~~i~V~~~~~~ 99 (192)
++||||+.|+..++|.||..+|+.||+|.+|.++. +++||||+.....+|++|+.+|.+..+..+.|+|.|+..+
T Consensus 421 SrTLwvG~i~k~v~e~dL~~~feefGeiqSi~li~-----~R~cAfI~M~~RqdA~kalqkl~n~kv~~k~Iki~Wa~g~ 495 (894)
T KOG0132|consen 421 SRTLWVGGIPKNVTEQDLANLFEEFGEIQSIILIP-----PRGCAFIKMVRRQDAEKALQKLSNVKVADKTIKIAWAVGK 495 (894)
T ss_pred eeeeeeccccchhhHHHHHHHHHhcccceeEeecc-----CCceeEEEEeehhHHHHHHHHHhcccccceeeEEeeeccC
Confidence 46999999999999999999999999999998874 4889999999999999999999999999999999998665
Q ss_pred CCC
Q 029496 100 IGP 102 (192)
Q Consensus 100 ~~~ 102 (192)
...
T Consensus 496 G~k 498 (894)
T KOG0132|consen 496 GPK 498 (894)
T ss_pred Ccc
Confidence 443
No 72
>PF13865 FoP_duplication: C-terminal duplication domain of Friend of PRMT1
Probab=99.06 E-value=6.2e-10 Score=72.89 Aligned_cols=20 Identities=40% Similarity=0.705 Sum_probs=18.2
Q ss_pred CCCCCHHhHhHHHHHHHHHh
Q 029496 165 KPNLSVEDLDADLEKYHIEA 184 (192)
Q Consensus 165 ~~~~~~~~lD~el~~~~~~~ 184 (192)
++++|+||||+|||+||+..
T Consensus 37 ~~~kT~EeLDaELD~Ym~~~ 56 (74)
T PF13865_consen 37 KPPKTAEELDAELDAYMSKT 56 (74)
T ss_pred CCCCCHHHHHHHHHHHHHHH
Confidence 77999999999999999754
No 73
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=99.06 E-value=6.4e-10 Score=91.46 Aligned_cols=81 Identities=20% Similarity=0.333 Sum_probs=74.9
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHhhhCCCeEEEEEEeCC-CCCcceEEEEEEcCHHHHHHHHHHhCCCccCCceEEEEEee
Q 029496 19 SGTKLYISNLEYGVSNEDIKELFSEVGELKRCSVHFDR-SGRSKGTAEVVLTRRADAIAAVKRYNNVQLDGKPMKIEIIG 97 (192)
Q Consensus 19 ~~~~l~V~nL~~~~te~~L~~~f~~~G~i~~v~i~~~~-tg~~~g~afV~f~~~~~a~~Ai~~l~~~~l~g~~i~V~~~~ 97 (192)
.-.+|||..++++.+|+||+.+|+.||+|.+|.+-.++ ...++||+||+|.+..+...||..||-+.|.|+-|+|-.+.
T Consensus 209 ~fnRiYVaSvHpDLSe~DiKSVFEAFG~I~~C~LAr~pt~~~HkGyGfiEy~n~qs~~eAiasMNlFDLGGQyLRVGk~v 288 (544)
T KOG0124|consen 209 KFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIASMNLFDLGGQYLRVGKCV 288 (544)
T ss_pred hhheEEeeecCCCccHHHHHHHHHhhcceeeEEeeccCCCCCccceeeEEeccccchHHHhhhcchhhcccceEeccccc
Confidence 34699999999999999999999999999999999999 67899999999999999999999999999999999997664
Q ss_pred cC
Q 029496 98 TN 99 (192)
Q Consensus 98 ~~ 99 (192)
++
T Consensus 289 TP 290 (544)
T KOG0124|consen 289 TP 290 (544)
T ss_pred CC
Confidence 43
No 74
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.01 E-value=1.1e-09 Score=96.40 Aligned_cols=78 Identities=28% Similarity=0.454 Sum_probs=70.7
Q ss_pred CCEEEEcCCCCCCCHHHHHHHhhhCCCeEEEEEEeCCCCC----cceEEEEEEcCHHHHHHHHHHhCCCccCCceEEEEE
Q 029496 20 GTKLYISNLEYGVSNEDIKELFSEVGELKRCSVHFDRSGR----SKGTAEVVLTRRADAIAAVKRYNNVQLDGKPMKIEI 95 (192)
Q Consensus 20 ~~~l~V~nL~~~~te~~L~~~f~~~G~i~~v~i~~~~tg~----~~g~afV~f~~~~~a~~Ai~~l~~~~l~g~~i~V~~ 95 (192)
.++|||.||++.+|.++|..+|..+|.|..+.|...+..+ +.||+||+|.++++|+.|++.|+++.|+|+.|.|++
T Consensus 515 ~t~lfvkNlnf~Tt~e~l~~~F~k~G~VlS~~I~kkkd~~~k~lSmGfgFVEF~~~e~A~~a~k~lqgtvldGH~l~lk~ 594 (725)
T KOG0110|consen 515 ETKLFVKNLNFDTTLEDLEDLFSKQGTVLSIEISKKKDPANKYLSMGFGFVEFAKPESAQAALKALQGTVLDGHKLELKI 594 (725)
T ss_pred chhhhhhcCCcccchhHHHHHHHhcCeEEEEEEeccccccccccccceeEEEecCHHHHHHHHHHhcCceecCceEEEEe
Confidence 3449999999999999999999999999999888776443 349999999999999999999999999999999999
Q ss_pred ee
Q 029496 96 IG 97 (192)
Q Consensus 96 ~~ 97 (192)
+.
T Consensus 595 S~ 596 (725)
T KOG0110|consen 595 SE 596 (725)
T ss_pred cc
Confidence 87
No 75
>KOG0153 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.00 E-value=1.3e-09 Score=88.88 Aligned_cols=82 Identities=28% Similarity=0.348 Sum_probs=70.0
Q ss_pred ccCCCCCCCCEEEEcCCCCCCCHHHHHHHhhhCCCeEEEEEEeCCCCCcceEEEEEEcCHHHHHHHHHHh-CCCccCCce
Q 029496 12 ARSSSIESGTKLYISNLEYGVSNEDIKELFSEVGELKRCSVHFDRSGRSKGTAEVVLTRRADAIAAVKRY-NNVQLDGKP 90 (192)
Q Consensus 12 ~~~~~~~~~~~l~V~nL~~~~te~~L~~~f~~~G~i~~v~i~~~~tg~~~g~afV~f~~~~~a~~Ai~~l-~~~~l~g~~ 90 (192)
..++....-++|||++|...++|.+|+++|-+||+|..+.+... +++|||+|.+.+.|+.|.+++ +...|+|++
T Consensus 220 lepPeD~~I~tLyIg~l~d~v~e~dIrdhFyqyGeirsi~~~~~-----~~CAFv~ftTR~aAE~Aae~~~n~lvI~G~R 294 (377)
T KOG0153|consen 220 LEPPEDTSIKTLYIGGLNDEVLEQDIRDHFYQYGEIRSIRILPR-----KGCAFVTFTTREAAEKAAEKSFNKLVINGFR 294 (377)
T ss_pred cCCCcccceeEEEecccccchhHHHHHHHHhhcCCeeeEEeecc-----cccceeeehhhHHHHHHHHhhcceeeecceE
Confidence 33445556679999999999999999999999999999988754 569999999999999988754 555689999
Q ss_pred EEEEEeec
Q 029496 91 MKIEIIGT 98 (192)
Q Consensus 91 i~V~~~~~ 98 (192)
|.|.+..+
T Consensus 295 l~i~Wg~~ 302 (377)
T KOG0153|consen 295 LKIKWGRP 302 (377)
T ss_pred EEEEeCCC
Confidence 99998876
No 76
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=98.98 E-value=1.9e-09 Score=91.09 Aligned_cols=73 Identities=30% Similarity=0.322 Sum_probs=69.0
Q ss_pred CEEEEcCCCCCCCHHHHHHHhhhCCCeEEEEEEeCCCCCcceEEEEEEcCHHHHHHHHHHhCCCccCCceEEEEEeec
Q 029496 21 TKLYISNLEYGVSNEDIKELFSEVGELKRCSVHFDRSGRSKGTAEVVLTRRADAIAAVKRYNNVQLDGKPMKIEIIGT 98 (192)
Q Consensus 21 ~~l~V~nL~~~~te~~L~~~f~~~G~i~~v~i~~~~tg~~~g~afV~f~~~~~a~~Ai~~l~~~~l~g~~i~V~~~~~ 98 (192)
.+|||+ +++||..|.++|+.+|++..++|++|. + +.|||||.|.++++|++|+..|+...|.|++|+|-++..
T Consensus 2 ~sl~vg---~~v~e~~l~~~f~~~~~v~s~rvc~d~-t-slgy~yvnf~~~~da~~A~~~~n~~~~~~~~~rim~s~r 74 (369)
T KOG0123|consen 2 ASLYVG---PDVTEAMLFDKFSPAGPVLSIRVCRDA-T-SLGYAYVNFQQPADAERALDTMNFDVLKGKPIRIMWSQR 74 (369)
T ss_pred CceecC---CcCChHHHHHHhcccCCceeEEEeecC-C-ccceEEEecCCHHHHHHHHHHcCCcccCCcEEEeehhcc
Confidence 478998 999999999999999999999999998 5 999999999999999999999999999999999988754
No 77
>KOG4454 consensus RNA binding protein (RRM superfamily) [General function prediction only]
Probab=98.96 E-value=3.3e-10 Score=87.31 Aligned_cols=82 Identities=21% Similarity=0.222 Sum_probs=74.9
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHhhhCCCeEEEEEEeCCCCCcceEEEEEEcCHHHHHHHHHHhCCCccCCceEEEEE
Q 029496 16 SIESGTKLYISNLEYGVSNEDIKELFSEVGELKRCSVHFDRSGRSKGTAEVVLTRRADAIAAVKRYNNVQLDGKPMKIEI 95 (192)
Q Consensus 16 ~~~~~~~l~V~nL~~~~te~~L~~~f~~~G~i~~v~i~~~~tg~~~g~afV~f~~~~~a~~Ai~~l~~~~l~g~~i~V~~ 95 (192)
..+...+|||.|+...++|+.|.++|-+.|+|.+|.|..++.+..+ ||||.|.++.+..-|++.+|+..+.+..|.|.+
T Consensus 5 aae~drtl~v~n~~~~v~eelL~ElfiqaGPV~kv~ip~~~d~~~k-Fa~v~f~~E~sv~~a~~L~ng~~l~~~e~q~~~ 83 (267)
T KOG4454|consen 5 AAEMDRTLLVQNMYSGVSEELLSELFIQAGPVYKVGIPSGQDQEQK-FAYVFFPNENSVQLAGQLENGDDLEEDEEQRTL 83 (267)
T ss_pred CcchhhHHHHHhhhhhhhHHHHHHHhhccCceEEEeCCCCccCCCc-eeeeecccccchhhhhhhcccchhccchhhccc
Confidence 4466789999999999999999999999999999999998877777 999999999999999999999999999998887
Q ss_pred eec
Q 029496 96 IGT 98 (192)
Q Consensus 96 ~~~ 98 (192)
...
T Consensus 84 r~G 86 (267)
T KOG4454|consen 84 RCG 86 (267)
T ss_pred ccC
Confidence 644
No 78
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.94 E-value=7.7e-10 Score=97.35 Aligned_cols=85 Identities=20% Similarity=0.371 Sum_probs=76.7
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHhhhCCCeEEEEEEeCC-CCCcceEEEEEEcCHHHHHHHHHHhCCCccCCceEEEE
Q 029496 16 SIESGTKLYISNLEYGVSNEDIKELFSEVGELKRCSVHFDR-SGRSKGTAEVVLTRRADAIAAVKRYNNVQLDGKPMKIE 94 (192)
Q Consensus 16 ~~~~~~~l~V~nL~~~~te~~L~~~f~~~G~i~~v~i~~~~-tg~~~g~afV~f~~~~~a~~Ai~~l~~~~l~g~~i~V~ 94 (192)
.-...+.|+|.|||+..+-.+++.+|..||.|..|+|+.-. .+.++|||||+|-++.+|.+|+..|..+-|.|+.|+++
T Consensus 609 ~kk~~tKIlVRNipFeAt~rEVr~LF~aFGqlksvRlPKK~~k~a~rGF~Fv~f~t~~ea~nA~~al~STHlyGRrLVLE 688 (725)
T KOG0110|consen 609 KKKKGTKILVRNIPFEATKREVRKLFTAFGQLKSVRLPKKIGKGAHRGFGFVDFLTPREAKNAFDALGSTHLYGRRLVLE 688 (725)
T ss_pred cccccceeeeeccchHHHHHHHHHHHhcccceeeeccchhhcchhhccceeeeccCcHHHHHHHHhhcccceechhhhee
Confidence 33345799999999999999999999999999999999875 66779999999999999999999999888999999999
Q ss_pred EeecCC
Q 029496 95 IIGTNI 100 (192)
Q Consensus 95 ~~~~~~ 100 (192)
++....
T Consensus 689 wA~~d~ 694 (725)
T KOG0110|consen 689 WAKSDN 694 (725)
T ss_pred hhccch
Confidence 997643
No 79
>KOG1995 consensus Conserved Zn-finger protein [General function prediction only]
Probab=98.93 E-value=6.1e-09 Score=85.49 Aligned_cols=86 Identities=20% Similarity=0.372 Sum_probs=77.2
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHhhhCCCeE--------EEEEEeCC-CCCcceEEEEEEcCHHHHHHHHHHhCCCcc
Q 029496 16 SIESGTKLYISNLEYGVSNEDIKELFSEVGELK--------RCSVHFDR-SGRSKGTAEVVLTRRADAIAAVKRYNNVQL 86 (192)
Q Consensus 16 ~~~~~~~l~V~nL~~~~te~~L~~~f~~~G~i~--------~v~i~~~~-tg~~~g~afV~f~~~~~a~~Ai~~l~~~~l 86 (192)
......+|||.+|+..+++++|.++|.+|+.|. .|.|.+++ |+.+|+-|.|+|++...|++||..+++..+
T Consensus 62 ~~s~~~ti~v~g~~d~~~~~~~~~~f~qcg~ikrnK~t~kPki~~y~dkeT~~~KGeatvS~~D~~~akaai~~~agkdf 141 (351)
T KOG1995|consen 62 DKSDNETIFVWGCPDSVCENDNADFFLQCGVIKRNKRTGKPKIKIYTDKETGAPKGEATVSYEDPPAAKAAIEWFAGKDF 141 (351)
T ss_pred cccccccceeeccCccchHHHHHHHHhhcceeccCCCCCCcchhccccccccCcCCceeeeecChhhhhhhhhhhccccc
Confidence 355667999999999999999999999999774 36777888 999999999999999999999999999999
Q ss_pred CCceEEEEEeecCCC
Q 029496 87 DGKPMKIEIIGTNIG 101 (192)
Q Consensus 87 ~g~~i~V~~~~~~~~ 101 (192)
.+..|+|.++.....
T Consensus 142 ~gn~ikvs~a~~r~~ 156 (351)
T KOG1995|consen 142 CGNTIKVSLAERRTG 156 (351)
T ss_pred cCCCchhhhhhhccC
Confidence 999999999877554
No 80
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=98.92 E-value=5.4e-09 Score=85.38 Aligned_cols=83 Identities=23% Similarity=0.385 Sum_probs=75.1
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHhhhCCCeE--------EEEEEeCCCCCcceEEEEEEcCHHHHHHHHHHhCCCccCC
Q 029496 17 IESGTKLYISNLEYGVSNEDIKELFSEVGELK--------RCSVHFDRSGRSKGTAEVVLTRRADAIAAVKRYNNVQLDG 88 (192)
Q Consensus 17 ~~~~~~l~V~nL~~~~te~~L~~~f~~~G~i~--------~v~i~~~~tg~~~g~afV~f~~~~~a~~Ai~~l~~~~l~g 88 (192)
....+.|||+|||.++|.+++.++|++||.|. .|+|..+..|+.+|-|.++|...++++-|+..|+...|.|
T Consensus 131 ~~~Nt~VYVsgLP~DiT~dE~~~~~sKcGiI~~d~~t~epk~KlYrd~~G~lKGDaLc~y~K~ESVeLA~~ilDe~~~rg 210 (382)
T KOG1548|consen 131 PKVNTSVYVSGLPLDITVDEFAEVMSKCGIIMRDPQTGEPKVKLYRDNQGKLKGDALCCYIKRESVELAIKILDEDELRG 210 (382)
T ss_pred cccCceEEecCCCCcccHHHHHHHHHhcceEeccCCCCCeeEEEEecCCCCccCceEEEeecccHHHHHHHHhCcccccC
Confidence 34567899999999999999999999999774 3788888899999999999999999999999999999999
Q ss_pred ceEEEEEeecC
Q 029496 89 KPMKIEIIGTN 99 (192)
Q Consensus 89 ~~i~V~~~~~~ 99 (192)
+.|+|+.|+-.
T Consensus 211 ~~~rVerAkfq 221 (382)
T KOG1548|consen 211 KKLRVERAKFQ 221 (382)
T ss_pred cEEEEehhhhh
Confidence 99999988543
No 81
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=98.91 E-value=1.4e-08 Score=78.59 Aligned_cols=87 Identities=23% Similarity=0.330 Sum_probs=70.6
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHhhhCCCeEEEEEEeC-C-CCCcceEEEEEEcCHHHHHHHHHHhCCCccC---CceEE
Q 029496 18 ESGTKLYISNLEYGVSNEDIKELFSEVGELKRCSVHFD-R-SGRSKGTAEVVLTRRADAIAAVKRYNNVQLD---GKPMK 92 (192)
Q Consensus 18 ~~~~~l~V~nL~~~~te~~L~~~f~~~G~i~~v~i~~~-~-tg~~~g~afV~f~~~~~a~~Ai~~l~~~~l~---g~~i~ 92 (192)
..-.+|||.+||.++.--+|+.+|..|--...+.|... + ....+-+|||+|.+..+|++|+..||+..++ ++.|+
T Consensus 32 ~~VRTLFVSGLP~DvKpREiynLFR~f~GYEgslLK~Tsk~~~~~~pvaFatF~s~q~A~aamnaLNGvrFDpE~~stLh 111 (284)
T KOG1457|consen 32 GAVRTLFVSGLPNDVKPREIYNLFRRFHGYEGSLLKYTSKGDQVCKPVAFATFTSHQFALAAMNALNGVRFDPETGSTLH 111 (284)
T ss_pred cccceeeeccCCcccCHHHHHHHhccCCCccceeeeeccCCCccccceEEEEecchHHHHHHHHHhcCeeeccccCceeE
Confidence 34679999999999999999999998865555544433 2 2334579999999999999999999999986 78999
Q ss_pred EEEeecCCCCCC
Q 029496 93 IEIIGTNIGPPA 104 (192)
Q Consensus 93 V~~~~~~~~~~~ 104 (192)
|++++.......
T Consensus 112 iElAKSNtK~kr 123 (284)
T KOG1457|consen 112 IELAKSNTKRKR 123 (284)
T ss_pred eeehhcCccccc
Confidence 999988666544
No 82
>KOG4209 consensus Splicing factor RNPS1, SR protein superfamily [RNA processing and modification]
Probab=98.90 E-value=4.6e-09 Score=83.30 Aligned_cols=86 Identities=21% Similarity=0.346 Sum_probs=78.8
Q ss_pred CCCCCCCEEEEcCCCCCCCHHHHHHHhhhCCCeEEEEEEeCC-CCCcceEEEEEEcCHHHHHHHHHHhCCCccCCceEEE
Q 029496 15 SSIESGTKLYISNLEYGVSNEDIKELFSEVGELKRCSVHFDR-SGRSKGTAEVVLTRRADAIAAVKRYNNVQLDGKPMKI 93 (192)
Q Consensus 15 ~~~~~~~~l~V~nL~~~~te~~L~~~f~~~G~i~~v~i~~~~-tg~~~g~afV~f~~~~~a~~Ai~~l~~~~l~g~~i~V 93 (192)
....+...+||+|+...+|.++++..|+.||.|..+.|..++ ++++++|+||+|.+.+.++.|+. |++..|.++.|.|
T Consensus 96 ~~~~d~~sv~v~nvd~~~t~~~~e~hf~~Cg~i~~~ti~~d~~~~~~k~~~yvef~~~~~~~~ay~-l~gs~i~~~~i~v 174 (231)
T KOG4209|consen 96 QKEVDAPSVWVGNVDFLVTLTKIELHFESCGGINRVTVPKDKFRGHPKGFAYVEFSSYELVEEAYK-LDGSEIPGPAIEV 174 (231)
T ss_pred hhccCCceEEEeccccccccchhhheeeccCCccceeeeccccCCCcceeEEEecccHhhhHHHhh-cCCccccccccee
Confidence 345567899999999999999999999999999999999999 88899999999999999999997 9999999999999
Q ss_pred EEeecCCC
Q 029496 94 EIIGTNIG 101 (192)
Q Consensus 94 ~~~~~~~~ 101 (192)
.+......
T Consensus 175 t~~r~~~p 182 (231)
T KOG4209|consen 175 TLKRTNVP 182 (231)
T ss_pred eeeeeecC
Confidence 99887633
No 83
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=98.88 E-value=1.6e-09 Score=84.33 Aligned_cols=71 Identities=23% Similarity=0.394 Sum_probs=65.6
Q ss_pred CEEEEcCCCCCCCHHHHHHHhhhCCCeEEEEEEeCCCCCcceEEEEEEcCHHHHHHHHHHhCCCccCCceEEEEEeec
Q 029496 21 TKLYISNLEYGVSNEDIKELFSEVGELKRCSVHFDRSGRSKGTAEVVLTRRADAIAAVKRYNNVQLDGKPMKIEIIGT 98 (192)
Q Consensus 21 ~~l~V~nL~~~~te~~L~~~f~~~G~i~~v~i~~~~tg~~~g~afV~f~~~~~a~~Ai~~l~~~~l~g~~i~V~~~~~ 98 (192)
..|||++||+.+.+.+|+.||..||.|.++.+. .+|+||+|.+..+|..||..|++.+|.+..+.|+++..
T Consensus 2 ~rv~vg~~~~~~~~~d~E~~f~~yg~~~d~~mk-------~gf~fv~fed~rda~Dav~~l~~~~l~~e~~vve~~r~ 72 (216)
T KOG0106|consen 2 PRVYIGRLPYRARERDVERFFKGYGKIPDADMK-------NGFGFVEFEDPRDADDAVHDLDGKELCGERLVVEHARG 72 (216)
T ss_pred CceeecccCCccchhHHHHHHhhccccccceee-------cccceeccCchhhhhcccchhcCceecceeeeeecccc
Confidence 479999999999999999999999999999885 57999999999999999999999999998888888764
No 84
>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2. It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).
Probab=98.75 E-value=1.1e-07 Score=65.32 Aligned_cols=78 Identities=22% Similarity=0.201 Sum_probs=67.3
Q ss_pred CEEEEcCCCCCCCHHHHHHHhhh--CCCeEEEEEEeCC-CCCcceEEEEEEcCHHHHHHHHHHhCCCccC----CceEEE
Q 029496 21 TKLYISNLEYGVSNEDIKELFSE--VGELKRCSVHFDR-SGRSKGTAEVVLTRRADAIAAVKRYNNVQLD----GKPMKI 93 (192)
Q Consensus 21 ~~l~V~nL~~~~te~~L~~~f~~--~G~i~~v~i~~~~-tg~~~g~afV~f~~~~~a~~Ai~~l~~~~l~----g~~i~V 93 (192)
++|.|.|||...|.++|.+++.. .|....+.++.|. +....|||||.|.+++.|.+-.+.+++..+. .+.+.|
T Consensus 2 TTvMirNIPn~~t~~~L~~~l~~~~~g~yDF~YLPiDf~~~~N~GYAFVNf~~~~~~~~F~~~f~g~~w~~~~s~Kvc~i 81 (97)
T PF04059_consen 2 TTVMIRNIPNKYTQEMLIQILDEHFKGKYDFFYLPIDFKNKCNLGYAFVNFTSPQAAIRFYKAFNGKKWPNFNSKKVCEI 81 (97)
T ss_pred eeEEEecCCCCCCHHHHHHHHHHhccCcceEEEeeeeccCCCceEEEEEEcCCHHHHHHHHHHHcCCccccCCCCcEEEE
Confidence 68999999999999999988864 3677888889898 8899999999999999999999999999875 355677
Q ss_pred EEeec
Q 029496 94 EIIGT 98 (192)
Q Consensus 94 ~~~~~ 98 (192)
.+|+-
T Consensus 82 ~yAri 86 (97)
T PF04059_consen 82 SYARI 86 (97)
T ss_pred ehhHh
Confidence 77654
No 85
>KOG0226 consensus RNA-binding proteins [General function prediction only]
Probab=98.74 E-value=1.1e-08 Score=80.42 Aligned_cols=82 Identities=21% Similarity=0.356 Sum_probs=75.1
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHhhhCCCeEEEEEEeCC-CCCcceEEEEEEcCHHHHHHHHHHhCCCccCCceEEEEE
Q 029496 17 IESGTKLYISNLEYGVSNEDIKELFSEVGELKRCSVHFDR-SGRSKGTAEVVLTRRADAIAAVKRYNNVQLDGKPMKIEI 95 (192)
Q Consensus 17 ~~~~~~l~V~nL~~~~te~~L~~~f~~~G~i~~v~i~~~~-tg~~~g~afV~f~~~~~a~~Ai~~l~~~~l~g~~i~V~~ 95 (192)
.+...+||.+.|..+++++.|-..|.+|-.-...++++|+ |++++||+||.|.++.++..|+.+|++..++.+.|++..
T Consensus 187 ~~~DfRIfcgdlgNevnd~vl~raf~Kfpsf~~akviRdkRTgKSkgygfVSf~~pad~~rAmrem~gkyVgsrpiklRk 266 (290)
T KOG0226|consen 187 DEDDFRIFCGDLGNEVNDDVLARAFKKFPSFQKAKVIRDKRTGKSKGYGFVSFRDPADYVRAMREMNGKYVGSRPIKLRK 266 (290)
T ss_pred ccccceeecccccccccHHHHHHHHHhccchhhccccccccccccccceeeeecCHHHHHHHHHhhcccccccchhHhhh
Confidence 3456899999999999999999999999887888899999 999999999999999999999999999999999998876
Q ss_pred eec
Q 029496 96 IGT 98 (192)
Q Consensus 96 ~~~ 98 (192)
...
T Consensus 267 S~w 269 (290)
T KOG0226|consen 267 SEW 269 (290)
T ss_pred hhH
Confidence 544
No 86
>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=98.62 E-value=3.4e-08 Score=85.14 Aligned_cols=71 Identities=27% Similarity=0.351 Sum_probs=63.7
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHhhhCCCeEEEEEEeCCCCCcceEEEEEEcCHHHHHHHHHHhCCCccCCceEE
Q 029496 18 ESGTKLYISNLEYGVSNEDIKELFSEVGELKRCSVHFDRSGRSKGTAEVVLTRRADAIAAVKRYNNVQLDGKPMK 92 (192)
Q Consensus 18 ~~~~~l~V~nL~~~~te~~L~~~f~~~G~i~~v~i~~~~tg~~~g~afV~f~~~~~a~~Ai~~l~~~~l~g~~i~ 92 (192)
-...+|+|-|||..+++++|..+|+.||+|+.|+.... .++.+||+|.|..+|++|++.|+...+.++.|.
T Consensus 73 ~~~~~L~v~nl~~~Vsn~~L~~~f~~yGeir~ir~t~~----~~~~~~v~FyDvR~A~~Alk~l~~~~~~~~~~k 143 (549)
T KOG4660|consen 73 MNQGTLVVFNLPRSVSNDTLLRIFGAYGEIREIRETPN----KRGIVFVEFYDVRDAERALKALNRREIAGKRIK 143 (549)
T ss_pred CccceEEEEecCCcCCHHHHHHHHHhhcchhhhhcccc----cCceEEEEEeehHhHHHHHHHHHHHHhhhhhhc
Confidence 34569999999999999999999999999999765433 478999999999999999999999999999887
No 87
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=98.58 E-value=2.3e-07 Score=79.12 Aligned_cols=77 Identities=19% Similarity=0.366 Sum_probs=63.4
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHhhhCCCeEEEEEEeCCCCCcceEEEEEEcCHHHHHHHHHHhCCCccCCceEEEEEe
Q 029496 17 IESGTKLYISNLEYGVSNEDIKELFSEVGELKRCSVHFDRSGRSKGTAEVVLTRRADAIAAVKRYNNVQLDGKPMKIEII 96 (192)
Q Consensus 17 ~~~~~~l~V~nL~~~~te~~L~~~f~~~G~i~~v~i~~~~tg~~~g~afV~f~~~~~a~~Ai~~l~~~~l~g~~i~V~~~ 96 (192)
.....-|-+.+|||++|+++|.++|+.|. |.++.+.+ .+|++.|-|||+|.+.+++++|+++ +...+..+-|.|-.+
T Consensus 7 ~~~~~~vr~rGLPwsat~~ei~~Ff~~~~-I~~~~~~r-~~Gr~sGeA~Ve~~seedv~~Alkk-dR~~mg~RYIEVf~~ 83 (510)
T KOG4211|consen 7 GSTAFEVRLRGLPWSATEKEILDFFSNCG-IENLEIPR-RNGRPSGEAYVEFTSEEDVEKALKK-DRESMGHRYIEVFTA 83 (510)
T ss_pred CCcceEEEecCCCccccHHHHHHHHhcCc-eeEEEEec-cCCCcCcceEEEeechHHHHHHHHh-hHHHhCCceEEEEcc
Confidence 35566788899999999999999999995 77754442 2799999999999999999999974 777788888877544
No 88
>KOG4849 consensus mRNA cleavage factor I subunit/CPSF subunit [RNA processing and modification]
Probab=98.55 E-value=9.9e-08 Score=78.31 Aligned_cols=77 Identities=19% Similarity=0.291 Sum_probs=66.7
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHhhhCC--CeEEEEEEeCC-CCCcceEEEEEEcCHHHHHHHHHHhCCCccCCceEEEEE
Q 029496 19 SGTKLYISNLEYGVSNEDIKELFSEVG--ELKRCSVHFDR-SGRSKGTAEVVLTRRADAIAAVKRYNNVQLDGKPMKIEI 95 (192)
Q Consensus 19 ~~~~l~V~nL~~~~te~~L~~~f~~~G--~i~~v~i~~~~-tg~~~g~afV~f~~~~~a~~Ai~~l~~~~l~g~~i~V~~ 95 (192)
....+||+||-|++|++||.+.+...| .+.+++++.++ +|+++|||+|...+....++.++.|...+|.|+.-.|--
T Consensus 79 rk~~~YvGNL~W~TTD~DL~~A~~S~G~~~~~dmKFFENR~NGQSKG~AL~~~~SdAa~Kq~MeiLP~k~iHGQ~P~V~~ 158 (498)
T KOG4849|consen 79 RKYCCYVGNLLWYTTDADLLKALQSTGLAQFADMKFFENRTNGQSKGYALLVLNSDAAVKQTMEILPTKTIHGQSPTVLS 158 (498)
T ss_pred ceEEEEecceeEEeccHHHHHHHHhhhHHHHhhhhhhhcccCCcccceEEEEecchHHHHHHHHhcccceecCCCCeeec
Confidence 345789999999999999988887665 56788888899 999999999999999999999999999999998665543
No 89
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=98.51 E-value=1.5e-07 Score=81.56 Aligned_cols=90 Identities=23% Similarity=0.304 Sum_probs=81.4
Q ss_pred ccCCCCCCCCEEEEcCCCCCCCHHHHHHHhhhCCCeEEEEEEeCC-CCCcceEEEEEEcCHHHHHHHHHHhCCCccCCce
Q 029496 12 ARSSSIESGTKLYISNLEYGVSNEDIKELFSEVGELKRCSVHFDR-SGRSKGTAEVVLTRRADAIAAVKRYNNVQLDGKP 90 (192)
Q Consensus 12 ~~~~~~~~~~~l~V~nL~~~~te~~L~~~f~~~G~i~~v~i~~~~-tg~~~g~afV~f~~~~~a~~Ai~~l~~~~l~g~~ 90 (192)
..+.......+|||++||..+++.++.+++..||.+....++.+. ++.+++|||.+|.++.....|+..||+..+.++.
T Consensus 281 ~~t~~~~~~~ki~v~~lp~~l~~~q~~Ell~~fg~lk~f~lv~d~~~g~skg~af~ey~dpsvtd~A~agLnGm~lgd~~ 360 (500)
T KOG0120|consen 281 ASTDVPDSPNKIFVGGLPLYLTEDQVKELLDSFGPLKAFRLVKDSATGNSKGFAFCEYCDPSVTDQAIAGLNGMQLGDKK 360 (500)
T ss_pred cccCcccccchhhhccCcCccCHHHHHHHHHhcccchhheeecccccccccceeeeeeeCCcchhhhhcccchhhhcCce
Confidence 334456677899999999999999999999999999999999998 8999999999999999999999999999999999
Q ss_pred EEEEEeecCCC
Q 029496 91 MKIEIIGTNIG 101 (192)
Q Consensus 91 i~V~~~~~~~~ 101 (192)
|.|+.+.....
T Consensus 361 lvvq~A~~g~~ 371 (500)
T KOG0120|consen 361 LVVQRAIVGAS 371 (500)
T ss_pred eEeehhhccch
Confidence 99998865433
No 90
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=98.50 E-value=1.4e-06 Score=72.85 Aligned_cols=81 Identities=20% Similarity=0.325 Sum_probs=71.7
Q ss_pred CCEEEEcCCCCC-CCHHHHHHHhhhCCCeEEEEEEeCCCCCcceEEEEEEcCHHHHHHHHHHhCCCccCCceEEEEEeec
Q 029496 20 GTKLYISNLEYG-VSNEDIKELFSEVGELKRCSVHFDRSGRSKGTAEVVLTRRADAIAAVKRYNNVQLDGKPMKIEIIGT 98 (192)
Q Consensus 20 ~~~l~V~nL~~~-~te~~L~~~f~~~G~i~~v~i~~~~tg~~~g~afV~f~~~~~a~~Ai~~l~~~~l~g~~i~V~~~~~ 98 (192)
.+.|.|.||.+. +|.+.|..+|..||.|.+|+|.+++ +-.|.|.|.+...|+-|++.|+++.|.|++|+|.+++-
T Consensus 297 n~vllvsnln~~~VT~d~LftlFgvYGdVqRVkil~nk----kd~ALIQmsd~~qAqLA~~hL~g~~l~gk~lrvt~SKH 372 (492)
T KOG1190|consen 297 NVVLLVSNLNEEAVTPDVLFTLFGVYGDVQRVKILYNK----KDNALIQMSDGQQAQLAMEHLEGHKLYGKKLRVTLSKH 372 (492)
T ss_pred ceEEEEecCchhccchhHHHHHHhhhcceEEEEeeecC----CcceeeeecchhHHHHHHHHhhcceecCceEEEeeccC
Confidence 578999999776 8999999999999999999999876 35799999999999999999999999999999999876
Q ss_pred CCCCCC
Q 029496 99 NIGPPA 104 (192)
Q Consensus 99 ~~~~~~ 104 (192)
.....+
T Consensus 373 ~~vqlp 378 (492)
T KOG1190|consen 373 TNVQLP 378 (492)
T ss_pred ccccCC
Confidence 544433
No 91
>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.
Probab=98.44 E-value=1.5e-06 Score=57.57 Aligned_cols=70 Identities=23% Similarity=0.307 Sum_probs=48.5
Q ss_pred CEEEEcCCCCCCCHHH----HHHHhhhCC-CeEEEEEEeCCCCCcceEEEEEEcCHHHHHHHHHHhCCCccCCceEEEEE
Q 029496 21 TKLYISNLEYGVSNED----IKELFSEVG-ELKRCSVHFDRSGRSKGTAEVVLTRRADAIAAVKRYNNVQLDGKPMKIEI 95 (192)
Q Consensus 21 ~~l~V~nL~~~~te~~----L~~~f~~~G-~i~~v~i~~~~tg~~~g~afV~f~~~~~a~~Ai~~l~~~~l~g~~i~V~~ 95 (192)
+-|||.|||.+.+... |+.|+..|| .|..| . .+.|+|.|.+.+.|.+|.+.|++-.+-|++|.|.+
T Consensus 3 s~L~V~NLP~~~d~~~I~~RL~qLsdNCGGkVl~v--~-------~~tAilrF~~~~~A~RA~KRmegEdVfG~kI~v~~ 73 (90)
T PF11608_consen 3 SLLYVSNLPTNKDPSSIKNRLRQLSDNCGGKVLSV--S-------GGTAILRFPNQEFAERAQKRMEGEDVFGNKISVSF 73 (90)
T ss_dssp EEEEEES--TTS-HHHHHHHHHHHHHTTT--EEE-----------TT-EEEEESSHHHHHHHHHHHTT--SSSS--EEES
T ss_pred cEEEEecCCCCCCHHHHHHHHHHHhhccCCEEEEE--e-------CCEEEEEeCCHHHHHHHHHhhcccccccceEEEEE
Confidence 4689999999988765 567777887 55443 2 46899999999999999999999999999999999
Q ss_pred eecC
Q 029496 96 IGTN 99 (192)
Q Consensus 96 ~~~~ 99 (192)
....
T Consensus 74 ~~~~ 77 (90)
T PF11608_consen 74 SPKN 77 (90)
T ss_dssp S--S
T ss_pred cCCc
Confidence 8543
No 92
>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation. It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.
Probab=98.39 E-value=9.8e-07 Score=61.74 Aligned_cols=72 Identities=28% Similarity=0.391 Sum_probs=45.9
Q ss_pred CCEEEEcCCCCCCCHHHHHHHhhhCCCeEEEEEEeCCCCCcceEEEEEEcCHHHHHHHHHHhCCC-----ccCCceEEEE
Q 029496 20 GTKLYISNLEYGVSNEDIKELFSEVGELKRCSVHFDRSGRSKGTAEVVLTRRADAIAAVKRYNNV-----QLDGKPMKIE 94 (192)
Q Consensus 20 ~~~l~V~nL~~~~te~~L~~~f~~~G~i~~v~i~~~~tg~~~g~afV~f~~~~~a~~Ai~~l~~~-----~l~g~~i~V~ 94 (192)
++.|+|.+++..++.++|+++|.+|+.|.+|.+... .-.|||-|.+++.|+.|+..+... .|.+..+.++
T Consensus 1 G~il~~~g~~~~~~re~iK~~f~~~g~V~yVD~~~G-----~~~g~VRf~~~~~A~~a~~~~~~~~~~~~~i~~~~~~~~ 75 (105)
T PF08777_consen 1 GCILKFSGLGEPTSREDIKEAFSQFGEVAYVDFSRG-----DTEGYVRFKTPEAAQKALEKLKEANDGKLKIKGKEVTLE 75 (105)
T ss_dssp --EEEEEE--SS--HHHHHHHT-SS--EEEEE--TT------SEEEEEESS---HHHHHHHHHHTTTS-B-TTSSSEEEE
T ss_pred CeEEEEecCCCCcCHHHHHHHHHhcCCcceEEecCC-----CCEEEEEECCcchHHHHHHHHHhccCCceEEcCceEEEE
Confidence 357899999999999999999999999999988643 347999999999999999877544 5677777776
Q ss_pred Ee
Q 029496 95 II 96 (192)
Q Consensus 95 ~~ 96 (192)
+.
T Consensus 76 vL 77 (105)
T PF08777_consen 76 VL 77 (105)
T ss_dssp --
T ss_pred EC
Confidence 64
No 93
>KOG0151 consensus Predicted splicing regulator, contains RRM, SWAP and RPR domains [General function prediction only]
Probab=98.38 E-value=7.1e-07 Score=79.10 Aligned_cols=81 Identities=25% Similarity=0.331 Sum_probs=72.2
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHhhhCCCeEEEEEEeCCC----CCcceEEEEEEcCHHHHHHHHHHhCCCccCCceEEE
Q 029496 18 ESGTKLYISNLEYGVSNEDIKELFSEVGELKRCSVHFDRS----GRSKGTAEVVLTRRADAIAAVKRYNNVQLDGKPMKI 93 (192)
Q Consensus 18 ~~~~~l~V~nL~~~~te~~L~~~f~~~G~i~~v~i~~~~t----g~~~g~afV~f~~~~~a~~Ai~~l~~~~l~g~~i~V 93 (192)
+..+.|||+||++.++++.|...|..||+|..|+|+..++ -..+-++||.|-+..+|++|++.|++..+....+++
T Consensus 172 P~TTNlyv~Nlnpsv~E~~ll~tfGrfgPlasvKimwpRtEeEk~r~r~cgfvafmnR~D~era~k~lqg~iv~~~e~K~ 251 (877)
T KOG0151|consen 172 PQTTNLYVGNLNPSVDENFLLRTFGRFGPLASVKIMWPRTEEEKRRERNCGFVAFMNRADAERALKELQGIIVMEYEMKL 251 (877)
T ss_pred CcccceeeecCCccccHHHHHHHhcccCcccceeeecccchhhhccccccceeeehhhhhHHHHHHHhcceeeeeeeeee
Confidence 4467999999999999999999999999999999988763 344678999999999999999999999999999998
Q ss_pred EEeec
Q 029496 94 EIIGT 98 (192)
Q Consensus 94 ~~~~~ 98 (192)
-+.+.
T Consensus 252 gWgk~ 256 (877)
T KOG0151|consen 252 GWGKA 256 (877)
T ss_pred ccccc
Confidence 88754
No 94
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=98.34 E-value=2e-06 Score=73.52 Aligned_cols=78 Identities=19% Similarity=0.299 Sum_probs=65.3
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHhhhCCCeEE-EEEEeCCCCCcceEEEEEEcCHHHHHHHHHHhCCCccCCceEEEEEe
Q 029496 18 ESGTKLYISNLEYGVSNEDIKELFSEVGELKR-CSVHFDRSGRSKGTAEVVLTRRADAIAAVKRYNNVQLDGKPMKIEII 96 (192)
Q Consensus 18 ~~~~~l~V~nL~~~~te~~L~~~f~~~G~i~~-v~i~~~~tg~~~g~afV~f~~~~~a~~Ai~~l~~~~l~g~~i~V~~~ 96 (192)
.....|-+.+||+.||++||.++|+-.-.+.. |.++.++.+++.+-|||.|++.+.|+.|+.. |...|.-+-|.|-.+
T Consensus 101 ~~d~vVRLRGLPfscte~dI~~FFaGL~Iv~~gi~l~~d~rgR~tGEAfVqF~sqe~ae~Al~r-hre~iGhRYIEvF~S 179 (510)
T KOG4211|consen 101 ANDGVVRLRGLPFSCTEEDIVEFFAGLEIVPDGILLPMDQRGRPTGEAFVQFESQESAEIALGR-HRENIGHRYIEVFRS 179 (510)
T ss_pred CCCceEEecCCCccCcHHHHHHHhcCCcccccceeeeccCCCCcccceEEEecCHHHHHHHHHH-HHHhhccceEEeehh
Confidence 46678999999999999999999987644444 5677777888999999999999999999975 777888888888654
No 95
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=98.23 E-value=8.6e-07 Score=69.19 Aligned_cols=71 Identities=24% Similarity=0.411 Sum_probs=63.8
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHhhhCCCeEEEEEEeCCCCCcceEEEEEEcCHHHHHHHHHHhCCCccCCceEEE
Q 029496 16 SIESGTKLYISNLEYGVSNEDIKELFSEVGELKRCSVHFDRSGRSKGTAEVVLTRRADAIAAVKRYNNVQLDGKPMKI 93 (192)
Q Consensus 16 ~~~~~~~l~V~nL~~~~te~~L~~~f~~~G~i~~v~i~~~~tg~~~g~afV~f~~~~~a~~Ai~~l~~~~l~g~~i~V 93 (192)
+....+.++|.+++..+.+.+|.+.|.++|++....+. ..++||+|++.++|..|+..|++..+.++.|++
T Consensus 95 p~~s~~r~~~~~~~~r~~~qdl~d~~~~~g~~~~~~~~-------~~~~~v~Fs~~~da~ra~~~l~~~~~~~~~l~~ 165 (216)
T KOG0106|consen 95 PSRTHFRLIVRNLSLRVSWQDLKDHFRPAGEVTYVDAR-------RNFAFVEFSEQEDAKRALEKLDGKKLNGRRISV 165 (216)
T ss_pred cccccceeeeccchhhhhHHHHhhhhcccCCCchhhhh-------ccccceeehhhhhhhhcchhccchhhcCceeee
Confidence 45667899999999999999999999999998555442 569999999999999999999999999999999
No 96
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=98.20 E-value=1.7e-06 Score=67.24 Aligned_cols=70 Identities=20% Similarity=0.277 Sum_probs=56.6
Q ss_pred CCCCCCCEEEEcCCCCCCCHHHHHHHhhhCCCeEEEEEEeCCCCCcceEEEEEEcCHHHHHHHHHHhCCCccC
Q 029496 15 SSIESGTKLYISNLEYGVSNEDIKELFSEVGELKRCSVHFDRSGRSKGTAEVVLTRRADAIAAVKRYNNVQLD 87 (192)
Q Consensus 15 ~~~~~~~~l~V~nL~~~~te~~L~~~f~~~G~i~~v~i~~~~tg~~~g~afV~f~~~~~a~~Ai~~l~~~~l~ 87 (192)
+......+|||.||..+|+|++|+.+|+.|.-...++|. .+.|. ..||++|++.+.|..|+..|++..|.
T Consensus 205 ~~~~acstlfianl~~~~~ed~l~~~~~~~~gf~~l~~~-~~~g~--~vaf~~~~~~~~at~am~~lqg~~~s 274 (284)
T KOG1457|consen 205 SGARACSTLFIANLGPNCTEDELKQLLSRYPGFHILKIR-ARGGM--PVAFADFEEIEQATDAMNHLQGNLLS 274 (284)
T ss_pred ccchhhhhHhhhccCCCCCHHHHHHHHHhCCCceEEEEe-cCCCc--ceEeecHHHHHHHHHHHHHhhcceec
Confidence 445566799999999999999999999999765555553 33443 48999999999999999999887653
No 97
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=98.20 E-value=7.4e-06 Score=63.71 Aligned_cols=80 Identities=19% Similarity=0.256 Sum_probs=69.2
Q ss_pred CCCCCCCCEEEEcCCCCCCCHHHHHHHhhhCCCeEEEEEEeCCCCCcceEEEEEEcCHHHHHHHHHHhCCCccC-CceEE
Q 029496 14 SSSIESGTKLYISNLEYGVSNEDIKELFSEVGELKRCSVHFDRSGRSKGTAEVVLTRRADAIAAVKRYNNVQLD-GKPMK 92 (192)
Q Consensus 14 ~~~~~~~~~l~V~nL~~~~te~~L~~~f~~~G~i~~v~i~~~~tg~~~g~afV~f~~~~~a~~Ai~~l~~~~l~-g~~i~ 92 (192)
.+...+...+|+.|||..++.+.|..+|.+|.-.+.|+++..+ .+.|||+|.+...+..|...|++..|- ...+.
T Consensus 140 ~~~~ppn~ilf~~niP~es~~e~l~~lf~qf~g~keir~i~~~----~~iAfve~~~d~~a~~a~~~lq~~~it~~~~m~ 215 (221)
T KOG4206|consen 140 AQMAPPNNILFLTNIPSESESEMLSDLFEQFPGFKEIRLIPPR----SGIAFVEFLSDRQASAAQQALQGFKITKKNTMQ 215 (221)
T ss_pred ccCCCCceEEEEecCCcchhHHHHHHHHhhCcccceeEeccCC----CceeEEecchhhhhHHHhhhhccceeccCceEE
Confidence 3446778899999999999999999999999988999888654 569999999999999999999999886 77788
Q ss_pred EEEee
Q 029496 93 IEIIG 97 (192)
Q Consensus 93 V~~~~ 97 (192)
|.+++
T Consensus 216 i~~a~ 220 (221)
T KOG4206|consen 216 ITFAK 220 (221)
T ss_pred ecccC
Confidence 77664
No 98
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=98.14 E-value=1.2e-06 Score=75.55 Aligned_cols=79 Identities=25% Similarity=0.360 Sum_probs=73.0
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHhhhCCCeEEEEEEeCC-CCCcceEEEEEEcCHHHHHHHHHHhCCCccCCceEEEEEee
Q 029496 19 SGTKLYISNLEYGVSNEDIKELFSEVGELKRCSVHFDR-SGRSKGTAEVVLTRRADAIAAVKRYNNVQLDGKPMKIEIIG 97 (192)
Q Consensus 19 ~~~~l~V~nL~~~~te~~L~~~f~~~G~i~~v~i~~~~-tg~~~g~afV~f~~~~~a~~Ai~~l~~~~l~g~~i~V~~~~ 97 (192)
+..+||+--|+..++.-+|+++|+.+|.|..|.|+.|+ +..++|.|||+|.+.+.+..|| .|.|..+.|.+|.|+...
T Consensus 178 d~Rtvf~~qla~r~~pRdL~efFs~~gkVrdVriI~Dr~s~rskgi~Yvef~D~~sVp~ai-aLsGqrllg~pv~vq~sE 256 (549)
T KOG0147|consen 178 DQRTVFCMQLARRNPPRDLEEFFSIVGKVRDVRIIGDRNSRRSKGIAYVEFCDEQSVPLAI-ALSGQRLLGVPVIVQLSE 256 (549)
T ss_pred hHHHHHHHHHhhcCCchhHHHHHHhhcCcceeEeeccccchhhcceeEEEEecccchhhHh-hhcCCcccCceeEecccH
Confidence 44688999999999999999999999999999999999 9999999999999999999999 689999999999998765
Q ss_pred c
Q 029496 98 T 98 (192)
Q Consensus 98 ~ 98 (192)
.
T Consensus 257 a 257 (549)
T KOG0147|consen 257 A 257 (549)
T ss_pred H
Confidence 4
No 99
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]
Probab=98.13 E-value=3.1e-06 Score=69.35 Aligned_cols=82 Identities=23% Similarity=0.443 Sum_probs=72.8
Q ss_pred CCCCCEEE-EcCCCCCCCHHHHHHHhhhCCCeEEEEEEeCC-CCCcceEEEEEEcCHHHHHHHHHHhCCCccCCceEEEE
Q 029496 17 IESGTKLY-ISNLEYGVSNEDIKELFSEVGELKRCSVHFDR-SGRSKGTAEVVLTRRADAIAAVKRYNNVQLDGKPMKIE 94 (192)
Q Consensus 17 ~~~~~~l~-V~nL~~~~te~~L~~~f~~~G~i~~v~i~~~~-tg~~~g~afV~f~~~~~a~~Ai~~l~~~~l~g~~i~V~ 94 (192)
.....++| |.+|+..+++++|+.+|..++.|..+++..++ ++.+++|+||+|.+...+..++.. +...+.++.+.|.
T Consensus 181 ~~~s~~~~~~~~~~f~~~~d~~~~~~~~~~~i~~~r~~~~~~s~~~kg~a~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 259 (285)
T KOG4210|consen 181 SGPSDTIFFVGELDFSLTRDDLKEHFVSSGEITSVRLPTDEESGDSKGFAYVDFSAGNSKKLALND-QTRSIGGRPLRLE 259 (285)
T ss_pred cCccccceeecccccccchHHHhhhccCcCcceeeccCCCCCccchhhhhhhhhhhchhHHHHhhc-ccCcccCcccccc
Confidence 34445666 99999999999999999999999999999998 999999999999999999999876 7888999999988
Q ss_pred EeecC
Q 029496 95 IIGTN 99 (192)
Q Consensus 95 ~~~~~ 99 (192)
...+.
T Consensus 260 ~~~~~ 264 (285)
T KOG4210|consen 260 EDEPR 264 (285)
T ss_pred cCCCC
Confidence 87653
No 100
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=98.02 E-value=3.6e-05 Score=58.40 Aligned_cols=76 Identities=25% Similarity=0.346 Sum_probs=63.7
Q ss_pred CCCCCCCCEEEEcCCCCCCCHHHHHHHhhhCCCeEEEEEEeCCCCCcceEEEEEEcCHHHHHHHHHHhCCCccC--CceE
Q 029496 14 SSSIESGTKLYISNLEYGVSNEDIKELFSEVGELKRCSVHFDRSGRSKGTAEVVLTRRADAIAAVKRYNNVQLD--GKPM 91 (192)
Q Consensus 14 ~~~~~~~~~l~V~nL~~~~te~~L~~~f~~~G~i~~v~i~~~~tg~~~g~afV~f~~~~~a~~Ai~~l~~~~l~--g~~i 91 (192)
++......+|.|++||...+|+||+++..+.|.|....+.+| +++.|+|-..++.+.||..|+...+. |...
T Consensus 109 ppsrrSe~RVvVsGLp~SgSWQDLKDHmReaGdvCfadv~rD------g~GvV~~~r~eDMkYAvr~ld~~~~~seGe~~ 182 (241)
T KOG0105|consen 109 PPSRRSEYRVVVSGLPPSGSWQDLKDHMREAGDVCFADVQRD------GVGVVEYLRKEDMKYAVRKLDDQKFRSEGETA 182 (241)
T ss_pred CcccccceeEEEecCCCCCchHHHHHHHHhhCCeeeeeeecc------cceeeeeeehhhHHHHHHhhccccccCcCcEe
Confidence 455567789999999999999999999999999999988765 48899999999999999999887764 4444
Q ss_pred EEEE
Q 029496 92 KIEI 95 (192)
Q Consensus 92 ~V~~ 95 (192)
.|.+
T Consensus 183 yirv 186 (241)
T KOG0105|consen 183 YIRV 186 (241)
T ss_pred eEEe
Confidence 4433
No 101
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=97.92 E-value=4.5e-05 Score=67.91 Aligned_cols=75 Identities=19% Similarity=0.308 Sum_probs=66.7
Q ss_pred CEEEEcCCCCCCCHHHHHHHhhhCCCe-EEEEEEeCCCCCcceEEEEEEcCHHHHHHHHHHhCCCccCCceEEEEE
Q 029496 21 TKLYISNLEYGVSNEDIKELFSEVGEL-KRCSVHFDRSGRSKGTAEVVLTRRADAIAAVKRYNNVQLDGKPMKIEI 95 (192)
Q Consensus 21 ~~l~V~nL~~~~te~~L~~~f~~~G~i-~~v~i~~~~tg~~~g~afV~f~~~~~a~~Ai~~l~~~~l~g~~i~V~~ 95 (192)
+.|-+.|+|++++-+||-++|..|-.+ .+|.+-++..|+..|-|-|.|++.++|.+|...|++..|..+.|.|.+
T Consensus 868 ~V~~~~n~Pf~v~l~dI~~FF~dY~~~p~sI~~r~nd~G~pTGe~mvAfes~~eAr~A~~dl~~~~i~nr~V~l~i 943 (944)
T KOG4307|consen 868 RVLSCNNFPFDVTLEDIVEFFNDYEPDPNSIRIRRNDDGVPTGECMVAFESQEEARRASMDLDGQKIRNRVVSLRI 943 (944)
T ss_pred eEEEecCCCccccHHHHHHHhcccccCCCceeEeecCCCCcccceeEeecCHHHHHhhhhccccCcccceeEEEEe
Confidence 378889999999999999999999655 456666666899999999999999999999999999999999998875
No 102
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=97.91 E-value=2.8e-05 Score=63.89 Aligned_cols=79 Identities=22% Similarity=0.347 Sum_probs=62.2
Q ss_pred CCEEEEcCCCCCCCHHH----H--HHHhhhCCCeEEEEEEeCC-CC-CcceEE--EEEEcCHHHHHHHHHHhCCCccCCc
Q 029496 20 GTKLYISNLEYGVSNED----I--KELFSEVGELKRCSVHFDR-SG-RSKGTA--EVVLTRRADAIAAVKRYNNVQLDGK 89 (192)
Q Consensus 20 ~~~l~V~nL~~~~te~~----L--~~~f~~~G~i~~v~i~~~~-tg-~~~g~a--fV~f~~~~~a~~Ai~~l~~~~l~g~ 89 (192)
..-+||-+|++.+..++ | .++|.+||.|..|.|.+.. +. ...+.+ ||+|.+.++|.+||...++..++|+
T Consensus 114 KNLvYVigi~pkva~Ee~~~vLk~~eyFGQyGkI~KIvvNkkt~s~nst~~h~gvYITy~~kedAarcIa~vDgs~~DGr 193 (480)
T COG5175 114 KNLVYVIGIPPKVADEEVAPVLKRHEYFGQYGKIKKIVVNKKTSSLNSTASHAGVYITYSTKEDAARCIAEVDGSLLDGR 193 (480)
T ss_pred cceeEEecCCCCCCcccccccccchhhhhhccceeEEEecccccccccccccceEEEEecchHHHHHHHHHhccccccCc
Confidence 34689999998877655 3 4889999999998776543 21 112333 9999999999999999999999999
Q ss_pred eEEEEEeec
Q 029496 90 PMKIEIIGT 98 (192)
Q Consensus 90 ~i~V~~~~~ 98 (192)
.|+..+-+.
T Consensus 194 ~lkatYGTT 202 (480)
T COG5175 194 VLKATYGTT 202 (480)
T ss_pred eEeeecCch
Confidence 999987644
No 103
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=97.91 E-value=0.00012 Score=61.05 Aligned_cols=85 Identities=22% Similarity=0.319 Sum_probs=74.3
Q ss_pred CCCCCCCEEEEcCCCCC-CCHHHHHHHhhhCCCeEEEEEEeCCCCCcceEEEEEEcCHHHHHHHHHHhCCCccCCceEEE
Q 029496 15 SSIESGTKLYISNLEYG-VSNEDIKELFSEVGELKRCSVHFDRSGRSKGTAEVVLTRRADAIAAVKRYNNVQLDGKPMKI 93 (192)
Q Consensus 15 ~~~~~~~~l~V~nL~~~-~te~~L~~~f~~~G~i~~v~i~~~~tg~~~g~afV~f~~~~~a~~Ai~~l~~~~l~g~~i~V 93 (192)
....+++.+.|-+|... ++-+-|..+|-.||.|.+|++++.+ .+.|.|+..+....++|+..|++..+-|.+|.|
T Consensus 282 ~g~~~g~VmMVyGLdh~k~N~drlFNl~ClYGNV~rvkFmkTk----~gtamVemgd~~aver~v~hLnn~~lfG~kl~v 357 (494)
T KOG1456|consen 282 GGGAPGCVMMVYGLDHGKMNCDRLFNLFCLYGNVERVKFMKTK----PGTAMVEMGDAYAVERAVTHLNNIPLFGGKLNV 357 (494)
T ss_pred CCCCCCcEEEEEeccccccchhhhhhhhhhcCceeeEEEeecc----cceeEEEcCcHHHHHHHHHHhccCccccceEEE
Confidence 45567889999999876 6677899999999999999999775 468999999999999999999999999999999
Q ss_pred EEeecCCCCC
Q 029496 94 EIIGTNIGPP 103 (192)
Q Consensus 94 ~~~~~~~~~~ 103 (192)
.+++......
T Consensus 358 ~~SkQ~~v~~ 367 (494)
T KOG1456|consen 358 CVSKQNFVSP 367 (494)
T ss_pred eecccccccc
Confidence 9987765543
No 104
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=97.80 E-value=5e-05 Score=63.43 Aligned_cols=83 Identities=16% Similarity=0.280 Sum_probs=68.8
Q ss_pred CCCCCCCCEEEEcCCCCCCCHHHHHHHhhhCC-CeEE--EEEEeCCCCCcceEEEEEEcCHHHHHHHHHHhCCCccCCce
Q 029496 14 SSSIESGTKLYISNLEYGVSNEDIKELFSEVG-ELKR--CSVHFDRSGRSKGTAEVVLTRRADAIAAVKRYNNVQLDGKP 90 (192)
Q Consensus 14 ~~~~~~~~~l~V~nL~~~~te~~L~~~f~~~G-~i~~--v~i~~~~tg~~~g~afV~f~~~~~a~~Ai~~l~~~~l~g~~ 90 (192)
.+...+.-.|-+.+||+..+.++|..+|..|- .|.. |.++.+..|++.|-|||+|.+.++|.+|....+.+..+.+-
T Consensus 274 ~p~~~~kdcvRLRGLPy~AtvEdIL~FlgdFa~~i~f~gVHmv~N~qGrPSGeAFIqm~nae~a~aaaqk~hk~~mk~RY 353 (508)
T KOG1365|consen 274 VPPTRSKDCVRLRGLPYEATVEDILDFLGDFATDIRFQGVHMVLNGQGRPSGEAFIQMRNAERARAAAQKCHKKLMKSRY 353 (508)
T ss_pred CCCCCCCCeeEecCCChhhhHHHHHHHHHHHhhhcccceeEEEEcCCCCcChhhhhhhhhhHHHHHHHHHHHHhhcccce
Confidence 34444456788999999999999999999886 3444 78888889999999999999999999999988888887888
Q ss_pred EEEEEe
Q 029496 91 MKIEII 96 (192)
Q Consensus 91 i~V~~~ 96 (192)
|.|-.+
T Consensus 354 iEvfp~ 359 (508)
T KOG1365|consen 354 IEVFPC 359 (508)
T ss_pred EEEeec
Confidence 877543
No 105
>KOG1855 consensus Predicted RNA-binding protein [General function prediction only]
Probab=97.75 E-value=0.0002 Score=60.61 Aligned_cols=67 Identities=24% Similarity=0.244 Sum_probs=56.1
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHhhhCCCeEEEEEEeC---C-C--CC--------cceEEEEEEcCHHHHHHHHHHhCCC
Q 029496 19 SGTKLYISNLEYGVSNEDIKELFSEVGELKRCSVHFD---R-S--GR--------SKGTAEVVLTRRADAIAAVKRYNNV 84 (192)
Q Consensus 19 ~~~~l~V~nL~~~~te~~L~~~f~~~G~i~~v~i~~~---~-t--g~--------~~g~afV~f~~~~~a~~Ai~~l~~~ 84 (192)
+..+|.+-|||.+-.-+-|.++|..+|.|+.|+|+.. + + +. .+-+|+|+|+..+.|.+|.+.|+..
T Consensus 230 ~srtivaenLP~Dh~~enl~kiFg~~G~IksIRIckPgaip~d~r~~~~~~~~~~tk~~AlvEye~~~~A~KA~e~~~~e 309 (484)
T KOG1855|consen 230 PSRTIVAENLPLDHSYENLSKIFGTVGSIKSIRICKPGAIPEDVRGFPKKYFELQTKECALVEYEEVEAARKARELLNPE 309 (484)
T ss_pred ccceEEEecCCcchHHHHHHHHhhcccceeeeeecCCCCCCcccccCCccchhhhhhhhhhhhhhhhHHHHHHHHhhchh
Confidence 6789999999999888999999999999999999876 2 2 11 1457999999999999999887554
Q ss_pred c
Q 029496 85 Q 85 (192)
Q Consensus 85 ~ 85 (192)
.
T Consensus 310 ~ 310 (484)
T KOG1855|consen 310 Q 310 (484)
T ss_pred h
Confidence 3
No 106
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=97.74 E-value=0.00014 Score=63.51 Aligned_cols=79 Identities=20% Similarity=0.251 Sum_probs=65.1
Q ss_pred CCCCEEEEcCCCCCCCH------HHHHHHhhhCCCeEEEEEEeCCCCCcceEEEEEEcCHHHHHHHHHHhCCCccC-Cce
Q 029496 18 ESGTKLYISNLEYGVSN------EDIKELFSEVGELKRCSVHFDRSGRSKGTAEVVLTRRADAIAAVKRYNNVQLD-GKP 90 (192)
Q Consensus 18 ~~~~~l~V~nL~~~~te------~~L~~~f~~~G~i~~v~i~~~~tg~~~g~afV~f~~~~~a~~Ai~~l~~~~l~-g~~ 90 (192)
.-...|+|-|+|---.. ..|..+|+++|+|..+.++.+..+.++||.|++|.+..+|+.|++.||+..|+ .+.
T Consensus 56 g~D~vVvv~g~PvV~~~rl~klk~vl~kvfsk~gk~vn~~~P~~e~ggtkG~lf~E~~~~~~A~~aVK~l~G~~ldknHt 135 (698)
T KOG2314|consen 56 GFDSVVVVDGAPVVGPARLEKLKKVLTKVFSKAGKIVNMYYPIDEEGGTKGYLFVEYASMRDAKKAVKSLNGKRLDKNHT 135 (698)
T ss_pred CcceEEEECCCcccChhHHHHHHHHHHHHHHhhccccceeeccCccCCeeeEEEEEecChhhHHHHHHhcccceecccce
Confidence 44568889998875433 23668899999999999998885668999999999999999999999999986 567
Q ss_pred EEEEEe
Q 029496 91 MKIEII 96 (192)
Q Consensus 91 i~V~~~ 96 (192)
..|..-
T Consensus 136 f~v~~f 141 (698)
T KOG2314|consen 136 FFVRLF 141 (698)
T ss_pred EEeehh
Confidence 777654
No 107
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=97.71 E-value=0.00013 Score=61.50 Aligned_cols=78 Identities=26% Similarity=0.337 Sum_probs=65.3
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHhhhCCCeEEEEEEeCCCCCcceEEEEEEcCHHHHHHHHHHhCCCccCCc-eEEEEEe
Q 029496 18 ESGTKLYISNLEYGVSNEDIKELFSEVGELKRCSVHFDRSGRSKGTAEVVLTRRADAIAAVKRYNNVQLDGK-PMKIEII 96 (192)
Q Consensus 18 ~~~~~l~V~nL~~~~te~~L~~~f~~~G~i~~v~i~~~~tg~~~g~afV~f~~~~~a~~Ai~~l~~~~l~g~-~i~V~~~ 96 (192)
+++.+|++.|+|.+++|++|+++|.+-|-..+..... ++.+.+|++.+++.++|-.|+..++++.+... .|+|.++
T Consensus 412 PpsatlHlsnip~svsee~lk~~f~~~g~~vkafkff---~kd~kmal~q~~sveeA~~ali~~hnh~lgen~hlRvSFS 488 (492)
T KOG1190|consen 412 PPSATLHLSNIPPSVSEEDLKNLFQEPGGQVKAFKFF---QKDRKMALPQLESVEEAIQALIDLHNHYLGENHHLRVSFS 488 (492)
T ss_pred CchhheeeccCCcccchhHHHHhhhcCCceEEeeeec---CCCcceeecccCChhHhhhhccccccccCCCCceEEEEee
Confidence 4567999999999999999999999888665544332 33466999999999999999999999999865 8899998
Q ss_pred ec
Q 029496 97 GT 98 (192)
Q Consensus 97 ~~ 98 (192)
+.
T Consensus 489 ks 490 (492)
T KOG1190|consen 489 KS 490 (492)
T ss_pred cc
Confidence 75
No 108
>PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif
Probab=97.69 E-value=0.00012 Score=44.61 Aligned_cols=52 Identities=25% Similarity=0.241 Sum_probs=41.6
Q ss_pred CEEEEcCCCCCCCHHHHHHHhhhCCCeEEEEEEeCCCCCcceEEEEEEcCHHHHHHHH
Q 029496 21 TKLYISNLEYGVSNEDIKELFSEVGELKRCSVHFDRSGRSKGTAEVVLTRRADAIAAV 78 (192)
Q Consensus 21 ~~l~V~nL~~~~te~~L~~~f~~~G~i~~v~i~~~~tg~~~g~afV~f~~~~~a~~Ai 78 (192)
+.|-|.+.+.+..+. +...|.+||+|.++.+.. ..-+.||.|.+..+|++||
T Consensus 2 ~wI~V~Gf~~~~~~~-vl~~F~~fGeI~~~~~~~-----~~~~~~l~y~~~~~ae~Al 53 (53)
T PF14605_consen 2 TWISVSGFPPDLAEE-VLEHFASFGEIVDIYVPE-----STNWMYLKYKSRKDAEKAL 53 (53)
T ss_pred cEEEEEeECchHHHH-HHHHHHhcCCEEEEEcCC-----CCcEEEEEECCHHHHHhhC
Confidence 567888888877755 455888999999988752 2458999999999999985
No 109
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=97.69 E-value=6.3e-05 Score=62.84 Aligned_cols=74 Identities=18% Similarity=0.309 Sum_probs=57.6
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHhhh-C---CCeEEEEEEeCCCCCcceEEEEEEcCHHHHHHHHHHhCCCccCCceEEE
Q 029496 19 SGTKLYISNLEYGVSNEDIKELFSE-V---GELKRCSVHFDRSGRSKGTAEVVLTRRADAIAAVKRYNNVQLDGKPMKI 93 (192)
Q Consensus 19 ~~~~l~V~nL~~~~te~~L~~~f~~-~---G~i~~v~i~~~~tg~~~g~afV~f~~~~~a~~Ai~~l~~~~l~g~~i~V 93 (192)
..-.|-+.+||+++++.++.++|.+ | +....|.++..++|+..|-|||.|..+++|+.|+.+ |...|+-+-|.+
T Consensus 160 ~qvivRmRGLPfdat~~dVv~FF~~~cpv~~g~egvLFV~rpdgrpTGdAFvlfa~ee~aq~aL~k-hrq~iGqRYIEl 237 (508)
T KOG1365|consen 160 NQVIVRMRGLPFDATALDVVEFFGPPCPVTGGTEGVLFVTRPDGRPTGDAFVLFACEEDAQFALRK-HRQNIGQRYIEL 237 (508)
T ss_pred cceEEEecCCCCCcchHHHHHhcCCCCcccCCccceEEEECCCCCcccceEEEecCHHHHHHHHHH-HHHHHhHHHHHH
Confidence 3445667899999999999999963 2 244567777666999999999999999999999975 655566555544
No 110
>KOG2202 consensus U2 snRNP splicing factor, small subunit, and related proteins [RNA processing and modification]
Probab=97.55 E-value=4.1e-05 Score=60.69 Aligned_cols=60 Identities=23% Similarity=0.319 Sum_probs=51.1
Q ss_pred HHHHhh-hCCCeEEEEEEeCCCCCcceEEEEEEcCHHHHHHHHHHhCCCccCCceEEEEEe
Q 029496 37 IKELFS-EVGELKRCSVHFDRSGRSKGTAEVVLTRRADAIAAVKRYNNVQLDGKPMKIEII 96 (192)
Q Consensus 37 L~~~f~-~~G~i~~v~i~~~~tg~~~g~afV~f~~~~~a~~Ai~~l~~~~l~g~~i~V~~~ 96 (192)
|...|. +||+|.++.|..+..-...|-+||.|...++|++|++.|++-.+.|++|..++.
T Consensus 85 ~f~E~~~kygEiee~~Vc~Nl~~hl~GNVYV~f~~Ee~ae~a~~~lnnRw~~G~pi~ae~~ 145 (260)
T KOG2202|consen 85 VFTELEDKYGEIEELNVCDNLGDHLVGNVYVKFRSEEDAEAALEDLNNRWYNGRPIHAELS 145 (260)
T ss_pred HHHHHHHHhhhhhhhhhhcccchhhhhhhhhhcccHHHHHHHHHHHcCccccCCcceeeec
Confidence 333344 899999998776665566889999999999999999999999999999999876
No 111
>PF13865 FoP_duplication: C-terminal duplication domain of Friend of PRMT1
Probab=97.48 E-value=0.00043 Score=45.25 Aligned_cols=18 Identities=28% Similarity=0.464 Sum_probs=15.4
Q ss_pred CCHHhHhHHHHHHHHHhh
Q 029496 168 LSVEDLDADLEKYHIEAK 185 (192)
Q Consensus 168 ~~~~~lD~el~~~~~~~~ 185 (192)
.++..||+|||+||++..
T Consensus 55 ~~~~~LD~~Ld~Y~~~~~ 72 (74)
T PF13865_consen 55 KTKSKLDAELDSYMSKKD 72 (74)
T ss_pred HHHHHHHHHHHHHHHccC
Confidence 678899999999999753
No 112
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=97.46 E-value=0.0062 Score=51.06 Aligned_cols=82 Identities=18% Similarity=0.166 Sum_probs=64.5
Q ss_pred CCCCCCEEEEcCC--CCCCCHHHHHHHhhhCCCeEEEEEEeCCCCCcceEEEEEEcCHHHHHHHHHHhCCCccCC--ceE
Q 029496 16 SIESGTKLYISNL--EYGVSNEDIKELFSEVGELKRCSVHFDRSGRSKGTAEVVLTRRADAIAAVKRYNNVQLDG--KPM 91 (192)
Q Consensus 16 ~~~~~~~l~V~nL--~~~~te~~L~~~f~~~G~i~~v~i~~~~tg~~~g~afV~f~~~~~a~~Ai~~l~~~~l~g--~~i 91 (192)
...+.+.|.+.=| -+-+|-+.|+.+....|+|.+|.|+.. ++ --|.|+|++.+.|++|.+.||+..|.. ..|
T Consensus 116 s~~pN~VLl~TIlNp~YpItvDVly~Icnp~GkVlRIvIfkk-ng---VQAmVEFdsv~~AqrAk~alNGADIYsGCCTL 191 (494)
T KOG1456|consen 116 SATPNKVLLFTILNPQYPITVDVLYTICNPQGKVLRIVIFKK-NG---VQAMVEFDSVEVAQRAKAALNGADIYSGCCTL 191 (494)
T ss_pred CCCCCeEEEEEeecCccccchhhhhhhcCCCCceEEEEEEec-cc---eeeEEeechhHHHHHHHhhcccccccccceeE
Confidence 4445556666544 445888999999999999999988754 33 359999999999999999999999864 478
Q ss_pred EEEEeecCCC
Q 029496 92 KIEIIGTNIG 101 (192)
Q Consensus 92 ~V~~~~~~~~ 101 (192)
+|+++++...
T Consensus 192 KIeyAkP~rl 201 (494)
T KOG1456|consen 192 KIEYAKPTRL 201 (494)
T ss_pred EEEecCccee
Confidence 9999977543
No 113
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=97.45 E-value=0.00047 Score=59.61 Aligned_cols=67 Identities=15% Similarity=0.303 Sum_probs=61.4
Q ss_pred CCCCCCCCEEEEcCCCCCCCHHHHHHHhh-hCCCeEEEEEEeCC-CCCcceEEEEEEcCHHHHHHHHHH
Q 029496 14 SSSIESGTKLYISNLEYGVSNEDIKELFS-EVGELKRCSVHFDR-SGRSKGTAEVVLTRRADAIAAVKR 80 (192)
Q Consensus 14 ~~~~~~~~~l~V~nL~~~~te~~L~~~f~-~~G~i~~v~i~~~~-tg~~~g~afV~f~~~~~a~~Ai~~ 80 (192)
....++.+||||++||.-++.++|-.+|. .||.|..+-|-.|+ -..++|-+=|+|.+.....+||.+
T Consensus 364 sq~lDprrTVFVGgvprpl~A~eLA~imd~lyGgV~yaGIDtD~k~KYPkGaGRVtFsnqqsYi~AIsa 432 (520)
T KOG0129|consen 364 NQPIDPRRTVFVGGLPRPLTAEELAMIMEDLFGGVLYVGIDTDPKLKYPKGAGRVTFSNQQAYIKAISA 432 (520)
T ss_pred CcccCccceEEecCCCCcchHHHHHHHHHHhcCceEEEEeccCcccCCCCCcceeeecccHHHHHHHhh
Confidence 35678889999999999999999999998 79999999999996 788999999999999999999974
No 114
>KOG3152 consensus TBP-binding protein, activator of basal transcription (contains rrm motif) [Transcription]
Probab=97.44 E-value=0.00015 Score=57.52 Aligned_cols=72 Identities=22% Similarity=0.288 Sum_probs=60.5
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHhhhCCCeEEEEEEeCC-C--------CCcce----EEEEEEcCHHHHHHHHHHhCCCc
Q 029496 19 SGTKLYISNLEYGVSNEDIKELFSEVGELKRCSVHFDR-S--------GRSKG----TAEVVLTRRADAIAAVKRYNNVQ 85 (192)
Q Consensus 19 ~~~~l~V~nL~~~~te~~L~~~f~~~G~i~~v~i~~~~-t--------g~~~g----~afV~f~~~~~a~~Ai~~l~~~~ 85 (192)
..-.||+++||+.+.-.-|+++|++||.|-.|.|.... + +.... -+.|+|.+...|+.+...||+..
T Consensus 73 k~GVvylS~IPp~m~~~rlReil~~yGeVGRvylqpE~~s~~~~r~~~~~n~~~~y~EGWvEF~~KrvAK~iAe~Lnn~~ 152 (278)
T KOG3152|consen 73 KTGVVYLSNIPPYMDPVRLREILSQYGEVGRVYLQPEDDSKRAARKRKGGNYKKLYSEGWVEFISKRVAKRIAELLNNTP 152 (278)
T ss_pred cceEEEeccCCCccCHHHHHHHHHhccccceEEecchhhHHHHHHhhcCCCccccchhHHHHHHHHHHHHHHHHHhCCCc
Confidence 44689999999999999999999999999999887654 4 22222 26789999999999999999999
Q ss_pred cCCce
Q 029496 86 LDGKP 90 (192)
Q Consensus 86 l~g~~ 90 (192)
|.|++
T Consensus 153 Iggkk 157 (278)
T KOG3152|consen 153 IGGKK 157 (278)
T ss_pred cCCCC
Confidence 99864
No 115
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=97.42 E-value=0.00073 Score=55.85 Aligned_cols=85 Identities=15% Similarity=0.254 Sum_probs=64.9
Q ss_pred CCCCCCCCEEEEcCCCC----CCCH-------HHHHHHhhhCCCeEEEEEEeCCCCCcceEEEEEEcCHHHHHHHHHHhC
Q 029496 14 SSSIESGTKLYISNLEY----GVSN-------EDIKELFSEVGELKRCSVHFDRSGRSKGTAEVVLTRRADAIAAVKRYN 82 (192)
Q Consensus 14 ~~~~~~~~~l~V~nL~~----~~te-------~~L~~~f~~~G~i~~v~i~~~~tg~~~g~afV~f~~~~~a~~Ai~~l~ 82 (192)
++.....++|.|.|+-. ..+. ++|.+-..+||.|.+|.|.-. .+.|.+-|.|.+.++|+.||+.|+
T Consensus 259 ~sk~r~~~tVi~kn~Ftp~~~~~~~~l~~dlkedl~eec~K~G~v~~vvv~d~---hPdGvvtV~f~n~eeA~~ciq~m~ 335 (382)
T KOG1548|consen 259 PSKARADRTVILKNMFTPEDFEKNPDLLNDLKEDLTEECEKFGQVRKVVVYDR---HPDGVVTVSFRNNEEADQCIQTMD 335 (382)
T ss_pred cccccCCcEEEeeecCCHHHhccCHHHHHHHHHHHHHHHHHhCCcceEEEecc---CCCceeEEEeCChHHHHHHHHHhc
Confidence 44556678888888732 1221 344555679999999876532 457899999999999999999999
Q ss_pred CCccCCceEEEEEeecCCC
Q 029496 83 NVQLDGKPMKIEIIGTNIG 101 (192)
Q Consensus 83 ~~~l~g~~i~V~~~~~~~~ 101 (192)
|..++|+.|..++......
T Consensus 336 GR~fdgRql~A~i~DG~t~ 354 (382)
T KOG1548|consen 336 GRWFDGRQLTASIWDGKTK 354 (382)
T ss_pred CeeecceEEEEEEeCCcce
Confidence 9999999999988765443
No 116
>PF08952 DUF1866: Domain of unknown function (DUF1866) ; InterPro: IPR015047 This domain, found in synaptojanin, has no known function. ; PDB: 1UFW_A 2DNR_A.
Probab=97.36 E-value=0.0011 Score=48.75 Aligned_cols=58 Identities=22% Similarity=0.339 Sum_probs=44.6
Q ss_pred HHHHHhhhCCCeEEEEEEeCCCCCcceEEEEEEcCHHHHHHHHHHhCCCccCCceEEEEEeecCCC
Q 029496 36 DIKELFSEVGELKRCSVHFDRSGRSKGTAEVVLTRRADAIAAVKRYNNVQLDGKPMKIEIIGTNIG 101 (192)
Q Consensus 36 ~L~~~f~~~G~i~~v~i~~~~tg~~~g~afV~f~~~~~a~~Ai~~l~~~~l~g~~i~V~~~~~~~~ 101 (192)
+|-+.|.+||++.-++++.+ .-.|+|.+-+.|.+|+. +++.+++|+.|+|++..+...
T Consensus 52 ~ll~~~~~~GevvLvRfv~~-------~mwVTF~dg~sALaals-~dg~~v~g~~l~i~LKtpdW~ 109 (146)
T PF08952_consen 52 ELLQKFAQYGEVVLVRFVGD-------TMWVTFRDGQSALAALS-LDGIQVNGRTLKIRLKTPDWL 109 (146)
T ss_dssp HHHHHHHCCS-ECEEEEETT-------CEEEEESSCHHHHHHHH-GCCSEETTEEEEEEE------
T ss_pred HHHHHHHhCCceEEEEEeCC-------eEEEEECccHHHHHHHc-cCCcEECCEEEEEEeCCccHH
Confidence 56777889999888888743 57999999999999995 799999999999999876543
No 117
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=97.29 E-value=0.00019 Score=65.24 Aligned_cols=81 Identities=21% Similarity=0.245 Sum_probs=72.3
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHhhhCCCeEEEEEEeCCCCCcceEEEEEEcCHHHHHHHHHHhCCCccCCceEEEEEee
Q 029496 18 ESGTKLYISNLEYGVSNEDIKELFSEVGELKRCSVHFDRSGRSKGTAEVVLTRRADAIAAVKRYNNVQLDGKPMKIEIIG 97 (192)
Q Consensus 18 ~~~~~l~V~nL~~~~te~~L~~~f~~~G~i~~v~i~~~~tg~~~g~afV~f~~~~~a~~Ai~~l~~~~l~g~~i~V~~~~ 97 (192)
.....|||.|+|+..|.+.|+.++..+|.++.+.++..+.|+++|.|||.|.++.++.+++...+...+.-..+.|.+..
T Consensus 734 ~gK~~v~i~g~pf~gt~e~~k~l~~~~gn~~~~~~vt~r~gkpkg~a~v~y~~ea~~s~~~~s~d~~~~rE~~~~v~vsn 813 (881)
T KOG0128|consen 734 FGKISVAISGPPFQGTKEELKSLASKTGNVTSLRLVTVRAGKPKGKARVDYNTEADASRKVASVDVAGKRENNGEVQVSN 813 (881)
T ss_pred hhhhhhheeCCCCCCchHHHHhhccccCCccccchhhhhccccccceeccCCCcchhhhhcccchhhhhhhcCccccccC
Confidence 34578999999999999999999999999999999988899999999999999999999998878777777777777755
Q ss_pred c
Q 029496 98 T 98 (192)
Q Consensus 98 ~ 98 (192)
+
T Consensus 814 p 814 (881)
T KOG0128|consen 814 P 814 (881)
T ss_pred C
Confidence 4
No 118
>KOG2416 consensus Acinus (induces apoptotic chromatin condensation) [Chromatin structure and dynamics]
Probab=97.29 E-value=0.00026 Score=62.18 Aligned_cols=78 Identities=23% Similarity=0.249 Sum_probs=63.0
Q ss_pred CCCCCCCEEEEcCCCCCCCHHHHHHHhh-hCCCeEEEEEEeCCCCCcceEEEEEEcCHHHHHHHHHHhCCCcc---CCce
Q 029496 15 SSIESGTKLYISNLEYGVSNEDIKELFS-EVGELKRCSVHFDRSGRSKGTAEVVLTRRADAIAAVKRYNNVQL---DGKP 90 (192)
Q Consensus 15 ~~~~~~~~l~V~nL~~~~te~~L~~~f~-~~G~i~~v~i~~~~tg~~~g~afV~f~~~~~a~~Ai~~l~~~~l---~g~~ 90 (192)
+....+..|||.||-.-.|.-+|+.|+. .+|.|... ++ .+.+..|||.|.+.++|-+.+.+||+..+ +.+.
T Consensus 439 sR~~~SnvlhI~nLvRPFTlgQLkelL~rtgg~Vee~-Wm----DkIKShCyV~yss~eEA~atr~AlhnV~WP~sNPK~ 513 (718)
T KOG2416|consen 439 SRKEPSNVLHIDNLVRPFTLGQLKELLGRTGGNVEEF-WM----DKIKSHCYVSYSSVEEAAATREALHNVQWPPSNPKH 513 (718)
T ss_pred CCCCccceEeeecccccchHHHHHHHHhhccCchHHH-HH----HHhhcceeEecccHHHHHHHHHHHhccccCCCCCce
Confidence 3456678999999999999999999998 56666554 22 23467899999999999999999999986 4577
Q ss_pred EEEEEee
Q 029496 91 MKIEIIG 97 (192)
Q Consensus 91 i~V~~~~ 97 (192)
|.|.|..
T Consensus 514 L~adf~~ 520 (718)
T KOG2416|consen 514 LIADFVR 520 (718)
T ss_pred eEeeecc
Confidence 8888763
No 119
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=97.22 E-value=0.00071 Score=61.97 Aligned_cols=81 Identities=14% Similarity=0.171 Sum_probs=70.2
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHhhhCCCeEEEEEEeCCCCCcceEEEEEEcCHHHHHHHHHHhCCCccCC--ceEEE
Q 029496 16 SIESGTKLYISNLEYGVSNEDIKELFSEVGELKRCSVHFDRSGRSKGTAEVVLTRRADAIAAVKRYNNVQLDG--KPMKI 93 (192)
Q Consensus 16 ~~~~~~~l~V~nL~~~~te~~L~~~f~~~G~i~~v~i~~~~tg~~~g~afV~f~~~~~a~~Ai~~l~~~~l~g--~~i~V 93 (192)
.....+.+||++|..|+....|...|..||.|..|.+- +..-||||.|++...+++|+..|-+..|.+ +.|.|
T Consensus 451 kst~ttr~~sgglg~w~p~~~l~r~fd~fGpir~Idy~-----hgq~yayi~yes~~~aq~a~~~~rgap~G~P~~r~rv 525 (975)
T KOG0112|consen 451 KSTPTTRLQSGGLGPWSPVSRLNREFDRFGPIRIIDYR-----HGQPYAYIQYESPPAAQAATHDMRGAPLGGPPRRLRV 525 (975)
T ss_pred ccccceeeccCCCCCCChHHHHHHHhhccCcceeeecc-----cCCcceeeecccCccchhhHHHHhcCcCCCCCccccc
Confidence 56677899999999999999999999999999887763 224599999999999999999999999985 67999
Q ss_pred EEeecCCC
Q 029496 94 EIIGTNIG 101 (192)
Q Consensus 94 ~~~~~~~~ 101 (192)
.++.+...
T Consensus 526 dla~~~~~ 533 (975)
T KOG0112|consen 526 DLASPPGA 533 (975)
T ss_pred ccccCCCC
Confidence 98866443
No 120
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=97.18 E-value=0.0012 Score=57.57 Aligned_cols=62 Identities=8% Similarity=0.154 Sum_probs=50.9
Q ss_pred HHHHhhhCCCeEEEEEEeC-CC---CCcceEEEEEEcCHHHHHHHHHHhCCCccCCceEEEEEeec
Q 029496 37 IKELFSEVGELKRCSVHFD-RS---GRSKGTAEVVLTRRADAIAAVKRYNNVQLDGKPMKIEIIGT 98 (192)
Q Consensus 37 L~~~f~~~G~i~~v~i~~~-~t---g~~~g~afV~f~~~~~a~~Ai~~l~~~~l~g~~i~V~~~~~ 98 (192)
++.-+..||.|..|.+..+ .. .-..|-.||+|.+.+++++|.+.|+|.++.++.|...+...
T Consensus 426 vr~ec~k~g~v~~v~ipr~~~~~~~~~G~GkVFVefas~ed~qrA~~~L~GrKF~nRtVvtsYyde 491 (500)
T KOG0120|consen 426 VRTECAKFGAVRSVEIPRPYPDENPVPGTGKVFVEFADTEDSQRAMEELTGRKFANRTVVASYYDE 491 (500)
T ss_pred HHHHhcccCceeEEecCCCCCCCCcCCCcccEEEEecChHHHHHHHHHccCceeCCcEEEEEecCH
Confidence 3444568899999999887 22 22357789999999999999999999999999999888643
No 121
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=97.16 E-value=0.002 Score=55.89 Aligned_cols=64 Identities=13% Similarity=0.285 Sum_probs=49.1
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHhhhCCCeEEEEEEe--CC--CCCcce---EEEEEEcCHHHHHHHHHHhC
Q 029496 18 ESGTKLYISNLEYGVSNEDIKELFSEVGELKRCSVHF--DR--SGRSKG---TAEVVLTRRADAIAAVKRYN 82 (192)
Q Consensus 18 ~~~~~l~V~nL~~~~te~~L~~~f~~~G~i~~v~i~~--~~--tg~~~g---~afV~f~~~~~a~~Ai~~l~ 82 (192)
.-..+|||++||++++|+.|...|..||.+ .|.... .. --.++| |+|+.|+++.+++..|.++.
T Consensus 257 ~~S~KVFvGGlp~dise~~i~~~F~~FGs~-~VdWP~k~~~~~~~ppkGs~~YvflvFe~E~sV~~Ll~aC~ 327 (520)
T KOG0129|consen 257 RYSRKVFVGGLPWDITEAQINASFGQFGSV-KVDWPGKANSRGRAPPKGSYGYVFLVFEDERSVQSLLSACS 327 (520)
T ss_pred ccccceeecCCCccccHHHHHhhcccccce-EeecCCCccccccCCCCCcccEEEEEecchHHHHHHHHHHh
Confidence 445799999999999999999999999975 334431 11 123567 99999999988888776654
No 122
>PF10309 DUF2414: Protein of unknown function (DUF2414); InterPro: IPR019416 This entry contains proteins that have no known function.
Probab=97.04 E-value=0.0051 Score=38.64 Aligned_cols=55 Identities=25% Similarity=0.250 Sum_probs=44.0
Q ss_pred CCEEEEcCCCCCCCHHHHHHHhhhC---CCeEEEEEEeCCCCCcceEEEEEEcCHHHHHHHHHHh
Q 029496 20 GTKLYISNLEYGVSNEDIKELFSEV---GELKRCSVHFDRSGRSKGTAEVVLTRRADAIAAVKRY 81 (192)
Q Consensus 20 ~~~l~V~nL~~~~te~~L~~~f~~~---G~i~~v~i~~~~tg~~~g~afV~f~~~~~a~~Ai~~l 81 (192)
..+|+|.++.. ++.++|+.+|..| .....|..+.|. .|-|.|.+.+.|.+|+..|
T Consensus 5 peavhirGvd~-lsT~dI~~y~~~y~~~~~~~~IEWIdDt------ScNvvf~d~~~A~~AL~~L 62 (62)
T PF10309_consen 5 PEAVHIRGVDE-LSTDDIKAYFSEYFDEEGPFRIEWIDDT------SCNVVFKDEETAARALVAL 62 (62)
T ss_pred eceEEEEcCCC-CCHHHHHHHHHHhcccCCCceEEEecCC------cEEEEECCHHHHHHHHHcC
Confidence 35899999865 5668899999988 134678888764 5899999999999999764
No 123
>PF08675 RNA_bind: RNA binding domain; InterPro: IPR014789 This domain corresponds to the RNA binding domain of Poly(A)-specific ribonuclease (PARN). ; GO: 0003723 RNA binding, 0004535 poly(A)-specific ribonuclease activity, 0046872 metal ion binding, 0006402 mRNA catabolic process, 0005634 nucleus, 0005737 cytoplasm; PDB: 3CTR_A 2ROK_A 3D45_B 1WHV_A.
Probab=97.02 E-value=0.0061 Score=40.49 Aligned_cols=59 Identities=22% Similarity=0.240 Sum_probs=43.8
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHhhhCCCeEEEEEEeCCCCCcceEEEEEEcCHHHHHHHHHHhC
Q 029496 16 SIESGTKLYISNLEYGVSNEDIKELFSEVGELKRCSVHFDRSGRSKGTAEVVLTRRADAIAAVKRYN 82 (192)
Q Consensus 16 ~~~~~~~l~V~nL~~~~te~~L~~~f~~~G~i~~v~i~~~~tg~~~g~afV~f~~~~~a~~Ai~~l~ 82 (192)
.+...+..||+ .|......||.++|+.||.| .|..+.|. .|||...+.+.|..++..+.
T Consensus 5 ~P~RdHVFhlt-FPkeWK~~DI~qlFspfG~I-~VsWi~dT------SAfV~l~~r~~~~~v~~~~~ 63 (87)
T PF08675_consen 5 QPSRDHVFHLT-FPKEWKTSDIYQLFSPFGQI-YVSWINDT------SAFVALHNRDQAKVVMNTLK 63 (87)
T ss_dssp --SGCCEEEEE---TT--HHHHHHHCCCCCCE-EEEEECTT------EEEEEECCCHHHHHHHHHHT
T ss_pred CCCcceEEEEe-CchHhhhhhHHHHhccCCcE-EEEEEcCC------cEEEEeecHHHHHHHHHHhc
Confidence 34556777887 99999999999999999986 55565543 79999999999999988775
No 124
>PF05172 Nup35_RRM: Nup53/35/40-type RNA recognition motif; InterPro: IPR007846 The MPPN (Mitotic PhosphoProtein N end) family is uncharacterised however it probably plays a role in the cell cycle because the family includes mitotic phosphoproteins O13026 from SWISSPROT []. This family also includes Q05166 from SWISSPROT a suppressor of thermosensitive mutations in the DNA polymerase delta gene, Pol III []. The conserved central region appears to be distantly related to the RNA-binding region RNP-1 (RNA recognition motif, IPR000504 from INTERPRO), suggesting an RNA binding function for this protein.; PDB: 1WWH_C 3P3D_A.
Probab=96.95 E-value=0.0031 Score=43.60 Aligned_cols=77 Identities=14% Similarity=0.125 Sum_probs=49.7
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHhhhCCCeEEEE-EEeC-------CCCCcceEEEEEEcCHHHHHHHHHHhCCCccCCce
Q 029496 19 SGTKLYISNLEYGVSNEDIKELFSEVGELKRCS-VHFD-------RSGRSKGTAEVVLTRRADAIAAVKRYNNVQLDGKP 90 (192)
Q Consensus 19 ~~~~l~V~nL~~~~te~~L~~~f~~~G~i~~v~-i~~~-------~tg~~~g~afV~f~~~~~a~~Ai~~l~~~~l~g~~ 90 (192)
..+.|.|=+.|+.. ...+.++|++||.|.+.. +..+ +.......-.|+|.++.+|++||.. |+..|.|..
T Consensus 5 ~~~wVtVFGfp~~~-~~~Vl~~F~~~G~Ile~~~~~~~~~~~~~~~~~~~~NWi~I~Y~~~~~A~rAL~~-NG~i~~g~~ 82 (100)
T PF05172_consen 5 SETWVTVFGFPPSA-SNQVLRHFSSFGTILEHFEVLRSSSGINPYPIPSGGNWIHITYDNPLSAQRALQK-NGTIFSGSL 82 (100)
T ss_dssp GCCEEEEE---GGG-HHHHHHHHHCCS-EECEEGGG----------E-CCTTEEEEEESSHHHHHHHHTT-TTEEETTCE
T ss_pred CCeEEEEEccCHHH-HHHHHHHHHhcceEEEeecccccccccccccCCCCCCEEEEECCCHHHHHHHHHh-CCeEEcCcE
Confidence 34567777888884 466788999999997663 1000 1011245889999999999999975 999998865
Q ss_pred E-EEEEee
Q 029496 91 M-KIEIIG 97 (192)
Q Consensus 91 i-~V~~~~ 97 (192)
| -|.+.+
T Consensus 83 mvGV~~~~ 90 (100)
T PF05172_consen 83 MVGVKPCD 90 (100)
T ss_dssp EEEEEE-H
T ss_pred EEEEEEcH
Confidence 4 466553
No 125
>KOG4676 consensus Splicing factor, arginine/serine-rich [RNA processing and modification]
Probab=96.95 E-value=0.0019 Score=54.23 Aligned_cols=76 Identities=12% Similarity=0.202 Sum_probs=60.7
Q ss_pred CEEEEcCCCCCCCHHHHHHHhhhCCCeEEEEEEeCC-C---CCcceEEEEEEcCHHHHHHHHHHhCCCccCCceEEEEEe
Q 029496 21 TKLYISNLEYGVSNEDIKELFSEVGELKRCSVHFDR-S---GRSKGTAEVVLTRRADAIAAVKRYNNVQLDGKPMKIEII 96 (192)
Q Consensus 21 ~~l~V~nL~~~~te~~L~~~f~~~G~i~~v~i~~~~-t---g~~~g~afV~f~~~~~a~~Ai~~l~~~~l~g~~i~V~~~ 96 (192)
..|.|.||.+.+|.++++.||...|.|..+.|+.+. + ....-.|||.|.+...+..|. .|.++.+-++-|.|-.+
T Consensus 8 ~vIqvanispsat~dqm~tlFg~lGkI~elrlyp~~~d~~~pv~sRtcyVkf~d~~sv~vaQ-hLtntvfvdraliv~p~ 86 (479)
T KOG4676|consen 8 GVIQVANISPSATKDQMQTLFGNLGKIPELRLYPNVDDSKIPVISRTCYVKFLDSQSVTVAQ-HLTNTVFVDRALIVRPY 86 (479)
T ss_pred ceeeecccCchhhHHHHHHHHhhccccccccccCCCCCccCcceeeeEEEeccCCcceeHHh-hhccceeeeeeEEEEec
Confidence 389999999999999999999999999999887744 1 223568999999999998887 46777766666555544
Q ss_pred e
Q 029496 97 G 97 (192)
Q Consensus 97 ~ 97 (192)
.
T Consensus 87 ~ 87 (479)
T KOG4676|consen 87 G 87 (479)
T ss_pred C
Confidence 3
No 126
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=96.81 E-value=0.001 Score=59.59 Aligned_cols=82 Identities=11% Similarity=0.056 Sum_probs=68.1
Q ss_pred CCCCCCCEEEEcCCCCCCCHHHHHHHhhhCCCeEE-EEEEeCCCCCcceEEEEEEcCHHHHHHHHHHhCCCccCCceEEE
Q 029496 15 SSIESGTKLYISNLEYGVSNEDIKELFSEVGELKR-CSVHFDRSGRSKGTAEVVLTRRADAIAAVKRYNNVQLDGKPMKI 93 (192)
Q Consensus 15 ~~~~~~~~l~V~nL~~~~te~~L~~~f~~~G~i~~-v~i~~~~tg~~~g~afV~f~~~~~a~~Ai~~l~~~~l~g~~i~V 93 (192)
.+...+..|||..||..+++.++-++|...-.|++ |.|.+.++++.++.|||.|..++.+..|...-+.+.+.-+.|+|
T Consensus 429 ~P~~ag~~lyv~~lP~~t~~~~~v~~f~~~~~Ved~I~lt~~P~~~~~~~afv~F~~~~a~~~a~~~~~k~y~G~r~irv 508 (944)
T KOG4307|consen 429 FPGGAGGALYVFQLPVMTPIVPPVNKFMGAAAVEDFIELTRLPTDLLRPAAFVAFIHPTAPLTASSVKTKFYPGHRIIRV 508 (944)
T ss_pred CCCCccceEEeccCCccccccchhhhhhhhhhhhheeEeccCCcccccchhhheeccccccchhhhcccccccCceEEEe
Confidence 34556789999999999999999999987656655 77777778999999999999988888888766777788888998
Q ss_pred EEe
Q 029496 94 EII 96 (192)
Q Consensus 94 ~~~ 96 (192)
+-.
T Consensus 509 ~si 511 (944)
T KOG4307|consen 509 DSI 511 (944)
T ss_pred ech
Confidence 754
No 127
>KOG1996 consensus mRNA splicing factor [RNA processing and modification]
Probab=96.76 E-value=0.0056 Score=49.78 Aligned_cols=63 Identities=17% Similarity=0.136 Sum_probs=51.3
Q ss_pred HHHHHHhhhCCCeEEEEEEeCC-CCC-cceEEEEEEcCHHHHHHHHHHhCCCccCCceEEEEEee
Q 029496 35 EDIKELFSEVGELKRCSVHFDR-SGR-SKGTAEVVLTRRADAIAAVKRYNNVQLDGKPMKIEIIG 97 (192)
Q Consensus 35 ~~L~~~f~~~G~i~~v~i~~~~-tg~-~~g~afV~f~~~~~a~~Ai~~l~~~~l~g~~i~V~~~~ 97 (192)
+++++..++||.|.+|.|..++ .-. -.---||+|+..++|.+|+-.||+..|.|+.+...+..
T Consensus 301 de~keEceKyg~V~~viifeip~~p~deavRiFveF~r~e~aiKA~VdlnGRyFGGr~v~A~Fyn 365 (378)
T KOG1996|consen 301 DETKEECEKYGKVGNVIIFEIPSQPEDEAVRIFVEFERVESAIKAVVDLNGRYFGGRVVSACFYN 365 (378)
T ss_pred HHHHHHHHhhcceeeEEEEecCCCccchhheeeeeeccHHHHHHHHHhcCCceecceeeeheecc
Confidence 3566778899999999888876 221 22347999999999999999999999999999887653
No 128
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=96.74 E-value=0.046 Score=49.81 Aligned_cols=69 Identities=14% Similarity=0.318 Sum_probs=50.4
Q ss_pred CEEEEc-CCCCCCCHHHHHHHhhhCCC-----eEEEEEEeCCCCCcceEEEEEEcCHHHHHHHHHHhCCCccCCceEEEE
Q 029496 21 TKLYIS-NLEYGVSNEDIKELFSEVGE-----LKRCSVHFDRSGRSKGTAEVVLTRRADAIAAVKRYNNVQLDGKPMKIE 94 (192)
Q Consensus 21 ~~l~V~-nL~~~~te~~L~~~f~~~G~-----i~~v~i~~~~tg~~~g~afV~f~~~~~a~~Ai~~l~~~~l~g~~i~V~ 94 (192)
.++||. +--..++..+|-.++..-+. |-.|.|. ..|.||+... ..+...+..|+...+.|+.|.|+
T Consensus 487 ~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~ig~i~i~-------~~~s~v~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 558 (629)
T PRK11634 487 QLYRIEVGRDDGVEVRHIVGAIANEGDISSRYIGNIKLF-------ASHSTIELPK-GMPGEVLQHFTRTRILNKPMNMQ 558 (629)
T ss_pred EEEEEecccccCCCHHHHHHHHHhhcCCChhhCCcEEEe-------CCceEEEcCh-hhHHHHHHHhccccccCCceEEE
Confidence 345553 33445788888877765443 4456665 3388999975 77888999999999999999999
Q ss_pred Eee
Q 029496 95 IIG 97 (192)
Q Consensus 95 ~~~ 97 (192)
.+.
T Consensus 559 ~~~ 561 (629)
T PRK11634 559 LLG 561 (629)
T ss_pred ECC
Confidence 885
No 129
>KOG0115 consensus RNA-binding protein p54nrb (RRM superfamily) [RNA processing and modification]
Probab=96.53 E-value=0.0038 Score=49.72 Aligned_cols=63 Identities=25% Similarity=0.482 Sum_probs=56.7
Q ss_pred CEEEEcCCCCCCCHHHHHHHhhhCCCeEEEEEEeCCCCCcceEEEEEEcCHHHHHHHHHHhCC
Q 029496 21 TKLYISNLEYGVSNEDIKELFSEVGELKRCSVHFDRSGRSKGTAEVVLTRRADAIAAVKRYNN 83 (192)
Q Consensus 21 ~~l~V~nL~~~~te~~L~~~f~~~G~i~~v~i~~~~tg~~~g~afV~f~~~~~a~~Ai~~l~~ 83 (192)
..|||.||...++-+.|...|+.||+|....++.|..+++.+-.+|.|...-.+.+|+..+..
T Consensus 32 a~l~V~nl~~~~sndll~~~f~~fg~~e~av~~vD~r~k~t~eg~v~~~~k~~a~~a~rr~~~ 94 (275)
T KOG0115|consen 32 AELYVVNLMQGASNDLLEQAFRRFGPIERAVAKVDDRGKPTREGIVEFAKKPNARKAARRCRE 94 (275)
T ss_pred ceEEEEecchhhhhHHHHHhhhhcCccchheeeecccccccccchhhhhcchhHHHHHHHhcc
Confidence 789999999999999999999999999887777777788888999999999999999987643
No 130
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=96.45 E-value=0.00015 Score=65.89 Aligned_cols=67 Identities=28% Similarity=0.381 Sum_probs=56.6
Q ss_pred CEEEEcCCCCCCCHHHHHHHhhhCCCeEEEEEEeCC-CCCcceEEEEEEcCHHHHHHHHHHhCCCccC
Q 029496 21 TKLYISNLEYGVSNEDIKELFSEVGELKRCSVHFDR-SGRSKGTAEVVLTRRADAIAAVKRYNNVQLD 87 (192)
Q Consensus 21 ~~l~V~nL~~~~te~~L~~~f~~~G~i~~v~i~~~~-tg~~~g~afV~f~~~~~a~~Ai~~l~~~~l~ 87 (192)
.++||+||+..+.+.+|...|..++.+..+.+.-+. .++.+|+|||+|..++.+.+||...+.+.+.
T Consensus 668 ~~~fvsnl~~~~~~~dl~~~~~~~~~~e~vqi~~h~n~~~~rG~~Y~~F~~~~~~~aaV~f~d~~~~g 735 (881)
T KOG0128|consen 668 IKIFVSNLSPKMSEEDLSERFSPSGTIEVVQIVIHKNEKRFRGKAYVEFLKPEHAGAAVAFRDSCFFG 735 (881)
T ss_pred HHHHHhhcchhhcCchhhhhcCccchhhhHHHHHHhhccccccceeeEeecCCchhhhhhhhhhhhhh
Confidence 578999999999999999999999988777776455 7889999999999999999999765444433
No 131
>PF03880 DbpA: DbpA RNA binding domain ; InterPro: IPR005580 This RNA binding domain is found at the C terminus of a number of DEAD helicase proteins [].; PDB: 2G0C_A 3MOJ_B.
Probab=96.38 E-value=0.025 Score=36.78 Aligned_cols=67 Identities=18% Similarity=0.289 Sum_probs=40.4
Q ss_pred EEEEc-CCCCCCCHHHHHHHhhhCC-----CeEEEEEEeCCCCCcceEEEEEEcCHHHHHHHHHHhCCCccCCceEEEEE
Q 029496 22 KLYIS-NLEYGVSNEDIKELFSEVG-----ELKRCSVHFDRSGRSKGTAEVVLTRRADAIAAVKRYNNVQLDGKPMKIEI 95 (192)
Q Consensus 22 ~l~V~-nL~~~~te~~L~~~f~~~G-----~i~~v~i~~~~tg~~~g~afV~f~~~~~a~~Ai~~l~~~~l~g~~i~V~~ 95 (192)
++||. +--..++..+|..++.... .|-.|.|.. -|+||+-.. +.|+.++..|++..+.|++|+|+.
T Consensus 2 rl~in~Gr~dg~~~~~iv~~i~~~~gi~~~~IG~I~I~~-------~~S~vev~~-~~a~~v~~~l~~~~~~gk~v~ve~ 73 (74)
T PF03880_consen 2 RLFINVGRKDGLTPRDIVGAICNEAGIPGRDIGRIDIFD-------NFSFVEVPE-EVAEKVLEALNGKKIKGKKVRVER 73 (74)
T ss_dssp EEEES-SGGGT--HHHHHHHHHTCTTB-GGGEEEEEE-S-------S-EEEEE-T-T-HHHHHHHHTT--SSS----EEE
T ss_pred EEEEEcccccCCCHHHHHHHHHhccCCCHHhEEEEEEee-------eEEEEEECH-HHHHHHHHHhcCCCCCCeeEEEEE
Confidence 45553 3344578888888886553 566787763 389999976 688999999999999999999987
Q ss_pred e
Q 029496 96 I 96 (192)
Q Consensus 96 ~ 96 (192)
|
T Consensus 74 A 74 (74)
T PF03880_consen 74 A 74 (74)
T ss_dssp -
T ss_pred C
Confidence 5
No 132
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=96.36 E-value=0.0012 Score=54.47 Aligned_cols=79 Identities=18% Similarity=0.310 Sum_probs=60.7
Q ss_pred CEEEEcCCCCCCCHH-HHH--HHhhhCCCeEEEEEEeCCC----CCcceEEEEEEcCHHHHHHHHHHhCCCccCCceEEE
Q 029496 21 TKLYISNLEYGVSNE-DIK--ELFSEVGELKRCSVHFDRS----GRSKGTAEVVLTRRADAIAAVKRYNNVQLDGKPMKI 93 (192)
Q Consensus 21 ~~l~V~nL~~~~te~-~L~--~~f~~~G~i~~v~i~~~~t----g~~~g~afV~f~~~~~a~~Ai~~l~~~~l~g~~i~V 93 (192)
.-+||-+|+..+..+ .|+ +.|.+||.|..|.+..+.+ -.....+||+|...++|..||...+++.++++.++.
T Consensus 78 nlvyvvgl~~~~ade~~l~~~eyfgqygki~ki~~~~~~S~~s~~~~~~s~yITy~~~eda~rci~~v~g~~~dg~~lka 157 (327)
T KOG2068|consen 78 NLVYVVGLPLDLADESVLERTEYFGQYGKINKIVKNKDPSSSSSSGGTCSVYITYEEEEDADRCIDDVDGFVDDGRALKA 157 (327)
T ss_pred hhhhhhCCCccccchhhhhCcccccccccceEEeecCCcccccCCCCCCcccccccchHhhhhHHHHhhhHHhhhhhhHH
Confidence 457788888776544 443 6789999999998877652 112334899999999999999999999999998877
Q ss_pred EEeecC
Q 029496 94 EIIGTN 99 (192)
Q Consensus 94 ~~~~~~ 99 (192)
.+...+
T Consensus 158 ~~gttk 163 (327)
T KOG2068|consen 158 SLGTTK 163 (327)
T ss_pred hhCCCc
Confidence 776543
No 133
>KOG2591 consensus c-Mpl binding protein, contains La domain [Signal transduction mechanisms]
Probab=96.29 E-value=0.0073 Score=52.99 Aligned_cols=75 Identities=17% Similarity=0.257 Sum_probs=57.9
Q ss_pred CCCCCCCEEEEcCCCCCCCHHHHHHHhh--hCCCeEEEEEEeCCCCCcceEEEEEEcCHHHHHHHHHHhCC--CccCCce
Q 029496 15 SSIESGTKLYISNLEYGVSNEDIKELFS--EVGELKRCSVHFDRSGRSKGTAEVVLTRRADAIAAVKRYNN--VQLDGKP 90 (192)
Q Consensus 15 ~~~~~~~~l~V~nL~~~~te~~L~~~f~--~~G~i~~v~i~~~~tg~~~g~afV~f~~~~~a~~Ai~~l~~--~~l~g~~ 90 (192)
.+..+-|.|.|..||+.+-+++++.||. .|-.+++|.+-.+. -=||+|++..||+.|.+.|.. ++|.|+.
T Consensus 170 rp~~kRcIvilREIpettp~e~Vk~lf~~encPk~iscefa~N~------nWyITfesd~DAQqAykylreevk~fqgKp 243 (684)
T KOG2591|consen 170 RPNHKRCIVILREIPETTPIEVVKALFKGENCPKVISCEFAHND------NWYITFESDTDAQQAYKYLREEVKTFQGKP 243 (684)
T ss_pred ccCcceeEEEEeecCCCChHHHHHHHhccCCCCCceeeeeeecC------ceEEEeecchhHHHHHHHHHHHHHhhcCcc
Confidence 3455668888999999999999999996 57788888876553 249999999999999877643 3467776
Q ss_pred EEEEE
Q 029496 91 MKIEI 95 (192)
Q Consensus 91 i~V~~ 95 (192)
|..++
T Consensus 244 ImARI 248 (684)
T KOG2591|consen 244 IMARI 248 (684)
T ss_pred hhhhh
Confidence 64443
No 134
>KOG2193 consensus IGF-II mRNA-binding protein IMP, contains RRM and KH domains [RNA processing and modification; General function prediction only]
Probab=96.14 E-value=0.0059 Score=51.96 Aligned_cols=73 Identities=25% Similarity=0.244 Sum_probs=57.0
Q ss_pred CEEEEcCCCCCCCHHHHHHHhhhCC-CeEEEEEEeCCCCCcceEEEEEEcCHHHHHHHHHHhCCCc-cCCceEEEEEeec
Q 029496 21 TKLYISNLEYGVSNEDIKELFSEVG-ELKRCSVHFDRSGRSKGTAEVVLTRRADAIAAVKRYNNVQ-LDGKPMKIEIIGT 98 (192)
Q Consensus 21 ~~l~V~nL~~~~te~~L~~~f~~~G-~i~~v~i~~~~tg~~~g~afV~f~~~~~a~~Ai~~l~~~~-l~g~~i~V~~~~~ 98 (192)
.++|++||.+.++..+|+.+|...- ....-.++ ..+|+||.+.+..-|.+|++.+++.. +.|.++.|+...+
T Consensus 2 nklyignL~p~~~psdl~svfg~ak~~~~g~fl~------k~gyafvd~pdq~wa~kaie~~sgk~elqGkr~e~~~sv~ 75 (584)
T KOG2193|consen 2 NKLYIGNLSPQVTPSDLESVFGDAKIPGSGQFLV------KSGYAFVDCPDQQWANKAIETLSGKVELQGKRQEVEHSVP 75 (584)
T ss_pred CcccccccCCCCChHHHHHHhccccCCCCcceee------ecceeeccCCchhhhhhhHHhhchhhhhcCceeeccchhh
Confidence 4689999999999999999996431 11111222 25799999999999999999998865 8899999987755
Q ss_pred C
Q 029496 99 N 99 (192)
Q Consensus 99 ~ 99 (192)
+
T Consensus 76 k 76 (584)
T KOG2193|consen 76 K 76 (584)
T ss_pred H
Confidence 4
No 135
>PF03467 Smg4_UPF3: Smg-4/UPF3 family; InterPro: IPR005120 Nonsense-mediated mRNA decay (NMD) is a surveillance mechanism by which eukaryotic cells detect and degrade transcripts containing premature termination codons. Three 'up-frameshift' proteins, UPF1, UPF2 and UPF3, are essential for this process in organisms ranging from yeast, human to plants []. Exon junction complexes (EJCs) are deposited ~24 nucleotides upstream of exon-exon junctions after splicing. Translation causes displacement of the EJCs, however, premature translation termination upstream of one or more EJCs triggers the recruitment of UPF1, UPF2 and UPF3 and activates the NMD pathway [, ]. This family contains UPF3. The crystal structure of the complex between human UPF2 and UPF3b, which are, respectively, a MIF4G (middle portion of eIF4G) domain and an RNP domain (ribonucleoprotein-type RNA-binding domain) has been determined to 1.95A. The protein-protein interface is mediated by highly conserved charged residues in UPF2 and UPF3b and involves the beta-sheet surface of the UPF3b ribonucleoprotein (RNP) domain, which is generally used by these domains to bind nucleic acids. In UPF3b the RNP domain does not bind RNA, whereas the UPF2 construct and the complex do. It is clear that some RNP domains have evolved for specific protein-protein interactions rather than as nucleic acid binding modules [].; PDB: 1UW4_A 2L08_A.
Probab=96.09 E-value=0.0092 Score=45.55 Aligned_cols=81 Identities=17% Similarity=0.213 Sum_probs=50.2
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHhhh-CCCe---EEEEEEeCC-C--CCcceEEEEEEcCHHHHHHHHHHhCCCccCC--
Q 029496 18 ESGTKLYISNLEYGVSNEDIKELFSE-VGEL---KRCSVHFDR-S--GRSKGTAEVVLTRRADAIAAVKRYNNVQLDG-- 88 (192)
Q Consensus 18 ~~~~~l~V~nL~~~~te~~L~~~f~~-~G~i---~~v~i~~~~-t--g~~~g~afV~f~~~~~a~~Ai~~l~~~~l~g-- 88 (192)
....+|.|.+||+.+||+++.+.+.. ++.. ..+.-.... + -....-|||.|.+.+++..-+..++++.+.+
T Consensus 5 ~~~~KvVIR~LPP~LteeeF~~~i~~~l~~~~~w~y~~g~~~~~~~~~~~~SRaYi~F~~~~~~~~F~~~~~g~~F~D~k 84 (176)
T PF03467_consen 5 KEGTKVVIRRLPPNLTEEEFWEQISPWLPDEWDWYYFQGKYGKKSFKPPTYSRAYINFKNPEDLLEFRDRFDGHVFVDSK 84 (176)
T ss_dssp ----EEEEEEE-TTS-HHHHCCCCSS--SSE---EEEEEEES-SSSTTS--EEEEEEESSCHHHHHHHHHCTTEEEE-TT
T ss_pred ccCceEEEeCCCCCCCHHHHHHHhhhhcccccceEEEecCCCCccCCCCcceEEEEEeCCHHHHHHHHHhcCCcEEECCC
Confidence 45679999999999999998886665 5544 333322222 1 1224569999999999999999999987643
Q ss_pred ---ceEEEEEeec
Q 029496 89 ---KPMKIEIIGT 98 (192)
Q Consensus 89 ---~~i~V~~~~~ 98 (192)
....|+++--
T Consensus 85 g~~~~~~VE~Apy 97 (176)
T PF03467_consen 85 GNEYPAVVEFAPY 97 (176)
T ss_dssp S-EEEEEEEE-SS
T ss_pred CCCcceeEEEcch
Confidence 2446666654
No 136
>PF11767 SET_assoc: Histone lysine methyltransferase SET associated; InterPro: IPR024636 The SET domain is a protein-protein interaction domain found in protein lysine methyltransferase enzymes. This entry represents a domain of unknown function which is associated with the SET domain and found in histone lysine methyltransferases [].
Probab=95.43 E-value=0.054 Score=34.49 Aligned_cols=55 Identities=22% Similarity=0.308 Sum_probs=43.3
Q ss_pred CCCHHHHHHHhhhCCCeEEEEEEeCCCCCcceEEEEEEcCHHHHHHHHHHhCCCccCCceEEE
Q 029496 31 GVSNEDIKELFSEVGELKRCSVHFDRSGRSKGTAEVVLTRRADAIAAVKRYNNVQLDGKPMKI 93 (192)
Q Consensus 31 ~~te~~L~~~f~~~G~i~~v~i~~~~tg~~~g~afV~f~~~~~a~~Ai~~l~~~~l~g~~i~V 93 (192)
.++-++++..|..|. ..+ |..|++| =||.|.+..+|++|....++..+....|.+
T Consensus 11 ~~~v~d~K~~Lr~y~-~~~--I~~d~tG-----fYIvF~~~~Ea~rC~~~~~~~~~f~y~m~M 65 (66)
T PF11767_consen 11 GVTVEDFKKRLRKYR-WDR--IRDDRTG-----FYIVFNDSKEAERCFRAEDGTLFFTYRMQM 65 (66)
T ss_pred CccHHHHHHHHhcCC-cce--EEecCCE-----EEEEECChHHHHHHHHhcCCCEEEEEEEEe
Confidence 367789999999995 334 4556555 399999999999999998988887776654
No 137
>PF15023 DUF4523: Protein of unknown function (DUF4523)
Probab=95.28 E-value=0.16 Score=37.24 Aligned_cols=73 Identities=18% Similarity=0.272 Sum_probs=51.3
Q ss_pred CCCCCCEEEEcCCCCCCC-HHHHH---HHhhhCCCeEEEEEEeCCCCCcceEEEEEEcCHHHHHHHHHHhCCCccCCceE
Q 029496 16 SIESGTKLYISNLEYGVS-NEDIK---ELFSEVGELKRCSVHFDRSGRSKGTAEVVLTRRADAIAAVKRYNNVQLDGKPM 91 (192)
Q Consensus 16 ~~~~~~~l~V~nL~~~~t-e~~L~---~~f~~~G~i~~v~i~~~~tg~~~g~afV~f~~~~~a~~Ai~~l~~~~l~g~~i 91 (192)
...+-.+|.|.=|..++. .+||+ ..++.||+|..|.+. .+-.|.|+|.+..+|=.|+.+++. ..-|..+
T Consensus 82 kepPMsTIVVRWlkknm~~~edl~sV~~~Ls~fGpI~SVT~c------GrqsavVvF~d~~SAC~Av~Af~s-~~pgtm~ 154 (166)
T PF15023_consen 82 KEPPMSTIVVRWLKKNMQPTEDLKSVIQRLSVFGPIQSVTLC------GRQSAVVVFKDITSACKAVSAFQS-RAPGTMF 154 (166)
T ss_pred CCCCceeEEeehhhhcCChHHHHHHHHHHHHhcCCcceeeec------CCceEEEEehhhHHHHHHHHhhcC-CCCCceE
Confidence 344556888876666544 24444 456789999998775 356899999999999999998876 3445555
Q ss_pred EEEE
Q 029496 92 KIEI 95 (192)
Q Consensus 92 ~V~~ 95 (192)
...+
T Consensus 155 qCsW 158 (166)
T PF15023_consen 155 QCSW 158 (166)
T ss_pred Eeec
Confidence 4443
No 138
>PF07576 BRAP2: BRCA1-associated protein 2; InterPro: IPR011422 These proteins include BRCA1-associated protein 2 (BRAP2), which binds nuclear localisation signals (NLSs) in vitro and in yeast two-hybrid screening []. These proteins share a region of sequence similarity at their N terminus. They also have IPR001607 from INTERPRO at the C terminus.
Probab=95.08 E-value=0.4 Score=33.71 Aligned_cols=69 Identities=7% Similarity=0.051 Sum_probs=49.1
Q ss_pred CCCEEEEc-CCCCCCCHHHHHHHhhhCC-CeEEEEEEeCCCCCcceEEEEEEcCHHHHHHHHHHhCCCccCC
Q 029496 19 SGTKLYIS-NLEYGVSNEDIKELFSEVG-ELKRCSVHFDRSGRSKGTAEVVLTRRADAIAAVKRYNNVQLDG 88 (192)
Q Consensus 19 ~~~~l~V~-nL~~~~te~~L~~~f~~~G-~i~~v~i~~~~tg~~~g~afV~f~~~~~a~~Ai~~l~~~~l~g 88 (192)
..+.|.|= ..|..++.++|..+...+- .|..++|++|.+. .+-.+.+.|.+.++|..-...+||..++.
T Consensus 11 ~~~~~~~l~vp~~~~~~d~l~~f~~~~~~~i~~~riird~~p-nrymVLikF~~~~~Ad~Fy~~fNGk~Fns 81 (110)
T PF07576_consen 11 RRSTLCCLAVPPYMTPSDFLLFFGAPFREDIEHIRIIRDGTP-NRYMVLIKFRDQESADEFYEEFNGKPFNS 81 (110)
T ss_pred CCceEEEEEeCcccccHHHHHHhhhcccccEEEEEEeeCCCC-ceEEEEEEECCHHHHHHHHHHhCCCccCC
Confidence 33455554 4455555566765555553 5678888887532 46679999999999999999999999764
No 139
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=94.97 E-value=0.0057 Score=56.32 Aligned_cols=81 Identities=15% Similarity=0.209 Sum_probs=64.8
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHhhhCCCeEEEEEEeCCCCCcceEEEEEEcCHHHHHHHHHHhCCCccCCceEEEEE
Q 029496 16 SIESGTKLYISNLEYGVSNEDIKELFSEVGELKRCSVHFDRSGRSKGTAEVVLTRRADAIAAVKRYNNVQLDGKPMKIEI 95 (192)
Q Consensus 16 ~~~~~~~l~V~nL~~~~te~~L~~~f~~~G~i~~v~i~~~~tg~~~g~afV~f~~~~~a~~Ai~~l~~~~l~g~~i~V~~ 95 (192)
+...+.+||++||+..+++.+|+..|..+|.|.+|.|-.-+-+.-.-|+||.|.+...+-.|+..+.+..|..-.+++-+
T Consensus 368 D~~atrTLf~Gnl~~kl~eseiR~af~e~gkve~VDiKtP~~~~esa~~f~~~~n~dmtp~ak~e~s~~~I~~g~~r~gl 447 (975)
T KOG0112|consen 368 DFRATRTLFLGNLDSKLTESEIRPAFDESGKVEEVDIKTPHIKTESAYAFVSLLNTDMTPSAKFEESGPLIGNGTHRIGL 447 (975)
T ss_pred chhhhhhhhhcCcccchhhhhhhhhhhhhccccccccccCCCCcccchhhhhhhccccCcccchhhcCCccccCcccccc
Confidence 34456799999999999999999999999999999887654334456999999999999999888888777544444443
Q ss_pred e
Q 029496 96 I 96 (192)
Q Consensus 96 ~ 96 (192)
-
T Consensus 448 G 448 (975)
T KOG0112|consen 448 G 448 (975)
T ss_pred c
Confidence 3
No 140
>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=94.96 E-value=0.046 Score=47.98 Aligned_cols=79 Identities=18% Similarity=0.128 Sum_probs=55.4
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHh-hhCCCeEEEEEEeCC-CCCcceEEEEEEcCHHHHHHHHHHhCCCcc---CC-ceEE
Q 029496 19 SGTKLYISNLEYGVSNEDIKELF-SEVGELKRCSVHFDR-SGRSKGTAEVVLTRRADAIAAVKRYNNVQL---DG-KPMK 92 (192)
Q Consensus 19 ~~~~l~V~nL~~~~te~~L~~~f-~~~G~i~~v~i~~~~-tg~~~g~afV~f~~~~~a~~Ai~~l~~~~l---~g-~~i~ 92 (192)
+.+++.|.|++...|...|.+.- ...+.-..+.++.|- +.+..|||||.|.+++.+..+.++++++.+ +. +.+.
T Consensus 387 ~rtt~~iknipNK~T~~ml~~~d~~~~gtYDFlYLPiDF~nkcNvGYAFINm~sp~ai~~F~kAFnGk~W~~FnS~Kia~ 466 (549)
T KOG4660|consen 387 PRTTLMIKNIPNKYTSKMLLAADEKNKGTYDFLYLPIDFKNKCNVGYAFINMTSPEAIIRFYKAFNGKKWEKFNSEKIAS 466 (549)
T ss_pred chhhhHhhccCchhhHHhhhhhhccccCccceEEeccccccccccceeEEeecCHHHHHHHHHHHcCCchhhhcceeeee
Confidence 34455556666555554443332 235666777888887 778899999999999999999999999875 33 3446
Q ss_pred EEEee
Q 029496 93 IEIIG 97 (192)
Q Consensus 93 V~~~~ 97 (192)
|.+++
T Consensus 467 itYAr 471 (549)
T KOG4660|consen 467 ITYAR 471 (549)
T ss_pred eehhh
Confidence 66653
No 141
>KOG2253 consensus U1 snRNP complex, subunit SNU71 and related PWI-motif proteins [RNA processing and modification]
Probab=94.92 E-value=0.025 Score=50.58 Aligned_cols=72 Identities=13% Similarity=0.233 Sum_probs=62.0
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHhhhCCCeEEEEEEeCCCCCcceEEEEEEcCHHHHHHHHHHhCCCccCCceEEEEE
Q 029496 16 SIESGTKLYISNLEYGVSNEDIKELFSEVGELKRCSVHFDRSGRSKGTAEVVLTRRADAIAAVKRYNNVQLDGKPMKIEI 95 (192)
Q Consensus 16 ~~~~~~~l~V~nL~~~~te~~L~~~f~~~G~i~~v~i~~~~tg~~~g~afV~f~~~~~a~~Ai~~l~~~~l~g~~i~V~~ 95 (192)
+..+..+|||+|+...+..+-++.++..||.|..+... -|+|.+|....-...|+..++-..++++.+.+..
T Consensus 36 ~~~~~~~vfv~~~~~~~s~~~~~~il~~~g~v~s~kr~--------~fgf~~f~~~~~~~ra~r~~t~~~~~~~kl~~~~ 107 (668)
T KOG2253|consen 36 PLPPRDTVFVGNISYLVSQEFWKSILAKSGFVPSWKRD--------KFGFCEFLKHIGDLRASRLLTELNIDDQKLIENV 107 (668)
T ss_pred CCCCCceeEecchhhhhhHHHHHHHHhhCCcchhhhhh--------hhcccchhhHHHHHHHHHHhcccCCCcchhhccc
Confidence 45567799999999999999999999999988776553 2999999999999999999999999888776654
No 142
>PF04847 Calcipressin: Calcipressin; InterPro: IPR006931 Calcipressin 1 negatively regulates calcineurin (IPR015757 from INTERPRO) by direct binding and is essential for the survival of T helper type 1 cells. Calcipressin 1 is a phosphoprotein that increases its capacity to inhibit calcineurin when phosphorylated at the FLISPP motif, and this phosphorylation also controls the half-life of calcipressin 1 by accelerating its degradation []. Calcineurin is a calcium-responsive enzyme that dephosphorylates the nuclear factor of activated T cells (NFAT). In so doing it promotes its nuclear translocation and uniquely links calcium signalling to transcriptional regulation []. Calcipressins are a family of proteins derived from three genes. Calcipressin 1 is also known as modulatory calcineurin-interacting protein 1 (MCIP1), Adapt78 and Down syndrome critical region 1 (DSCR1). Calcipressin 2 is variously known as MCIP2, ZAKI-4 and DSCR1-like 1. Calcipressin 3 is also called MCIP3 and DSCR1-like 2 []. DSCR1 (Adapt78) is associated with successful adaptation to oxidative stress and calcium stress as well as with diseases like Alzheimer's and Down syndrome. The DSCR1 (Adapt78) isoform 1 protein, calcipressin 1, inhibits calcineurin and protects against acute calcium-mediated stress damage, including transient oxidative stress []. Calcipressin 1 is encoded by DSCR1, a gene on human chromosome 21. Calcipressin 1 isoform 1 has an N-terminal coding region, which generates a new polypeptide of 252 amino acids. Endogenous calcipressin 1 exists as a complex together with the calcineurin A and B heterodimer []. ; GO: 0019722 calcium-mediated signaling; PDB: 1WEY_A.
Probab=94.35 E-value=0.13 Score=39.46 Aligned_cols=60 Identities=20% Similarity=0.181 Sum_probs=44.2
Q ss_pred HHHHHHHhhhCCCeEEEEEEeCCCCCcceEEEEEEcCHHHHHHHHHHhC--CCccCCceEEEEEeec
Q 029496 34 NEDIKELFSEVGELKRCSVHFDRSGRSKGTAEVVLTRRADAIAAVKRYN--NVQLDGKPMKIEIIGT 98 (192)
Q Consensus 34 e~~L~~~f~~~G~i~~v~i~~~~tg~~~g~afV~f~~~~~a~~Ai~~l~--~~~l~g~~i~V~~~~~ 98 (192)
.+.|+++|..|+.+..+.+.. +-+-..|.|.+.+.|.+|...|+ +..+.|..++|-++..
T Consensus 9 ~~~l~~l~~~~~~~~~~~~L~-----sFrRi~v~f~~~~~A~~~r~~l~~~~~~~~g~~l~~yf~~~ 70 (184)
T PF04847_consen 9 LAELEELFSTYDPPVQFSPLK-----SFRRIRVVFESPESAQRARQLLHWDGTSFNGKRLRVYFGQP 70 (184)
T ss_dssp HHHHHHHHHTT-SS-EEEEET-----TTTEEEEE-SSTTHHHHHHHTST--TSEETTEE-EEE----
T ss_pred HHHHHHHHHhcCCceEEEEcC-----CCCEEEEEeCCHHHHHHHHHHhcccccccCCCceEEEEccc
Confidence 467999999999887776653 24568999999999999999999 8899999999988844
No 143
>KOG2135 consensus Proteins containing the RNA recognition motif [General function prediction only]
Probab=93.74 E-value=0.065 Score=46.33 Aligned_cols=74 Identities=20% Similarity=0.294 Sum_probs=58.3
Q ss_pred CCEEEEcCCCCC-CCHHHHHHHhhhCCCeEEEEEEeCCCCCcceEEEEEEcCHHHHHHHHHHhCCCccCCceEEEEEeec
Q 029496 20 GTKLYISNLEYG-VSNEDIKELFSEVGELKRCSVHFDRSGRSKGTAEVVLTRRADAIAAVKRYNNVQLDGKPMKIEIIGT 98 (192)
Q Consensus 20 ~~~l~V~nL~~~-~te~~L~~~f~~~G~i~~v~i~~~~tg~~~g~afV~f~~~~~a~~Ai~~l~~~~l~g~~i~V~~~~~ 98 (192)
.+.|-+.-.+.. -+.++|...|.+||.|..|.+-+. --.|.|+|.+..+|-.|. ..++..|+++.|+|.+-.+
T Consensus 372 hs~l~lek~~~glnt~a~ln~hfA~fG~i~n~qv~~~-----~~~a~vTF~t~aeag~a~-~s~~avlnnr~iKl~whnp 445 (526)
T KOG2135|consen 372 HSPLALEKSPFGLNTIADLNPHFAQFGEIENIQVDYS-----SLHAVVTFKTRAEAGEAY-ASHGAVLNNRFIKLFWHNP 445 (526)
T ss_pred cchhhhhccCCCCchHhhhhhhhhhcCccccccccCc-----hhhheeeeeccccccchh-ccccceecCceeEEEEecC
Confidence 345555555555 456899999999999999988544 346899999999997666 4699999999999998876
Q ss_pred C
Q 029496 99 N 99 (192)
Q Consensus 99 ~ 99 (192)
.
T Consensus 446 s 446 (526)
T KOG2135|consen 446 S 446 (526)
T ss_pred C
Confidence 3
No 144
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]
Probab=93.29 E-value=0.044 Score=45.05 Aligned_cols=79 Identities=19% Similarity=0.217 Sum_probs=62.7
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHhhhCCCeEEEEEEeCC-CCCcceEEEEEEcCHHHHHHHHHHhCCCccCCceEEEEEe
Q 029496 18 ESGTKLYISNLEYGVSNEDIKELFSEVGELKRCSVHFDR-SGRSKGTAEVVLTRRADAIAAVKRYNNVQLDGKPMKIEII 96 (192)
Q Consensus 18 ~~~~~l~V~nL~~~~te~~L~~~f~~~G~i~~v~i~~~~-tg~~~g~afV~f~~~~~a~~Ai~~l~~~~l~g~~i~V~~~ 96 (192)
...+++|++++.+.+.+.++..++..+|.+....+.... ...+++++++.|...+.+..|+.......+.+..+...+.
T Consensus 86 ~~~~~~f~g~~s~~~e~~~~~~~~~~~g~~~~~~~S~~~~~~~sk~~~s~~f~~ks~~~~~l~~s~~~~~~~~~~~~dl~ 165 (285)
T KOG4210|consen 86 GSSSTFFVGELSENIEESEDDNFSSEAGLRVDARSSSLEDSLSSKGGLSVHFAGKSQFFAALEESGSKVLDGNKGEKDLN 165 (285)
T ss_pred cccccccccccccchhhccccccchhhcCcccchhhhhccccccccceeeccccHHHHHHHHHhhhccccccccccCccc
Confidence 356899999999999999888999999977777666655 7788999999999999999999765545555555544443
No 145
>KOG2318 consensus Uncharacterized conserved protein [Function unknown]
Probab=91.84 E-value=0.81 Score=40.80 Aligned_cols=79 Identities=18% Similarity=0.259 Sum_probs=59.9
Q ss_pred CCCCCEEEEcCCCCC-CCHHHHHHHhhhC----CCeEEEEEEeCC-----------CCC---------------------
Q 029496 17 IESGTKLYISNLEYG-VSNEDIKELFSEV----GELKRCSVHFDR-----------SGR--------------------- 59 (192)
Q Consensus 17 ~~~~~~l~V~nL~~~-~te~~L~~~f~~~----G~i~~v~i~~~~-----------tg~--------------------- 59 (192)
...+++|-|-|+.|. +...+|.-+|+.| |.|..|.|.... +|.
T Consensus 171 ~~~T~RLAVvNMDWd~v~AkDL~v~~nSFlP~gGsilSV~IYpSeFGkeRM~eEeV~GP~~el~~~~e~~~~s~sD~ee~ 250 (650)
T KOG2318|consen 171 GEETKRLAVVNMDWDRVKAKDLFVLFNSFLPKGGSILSVKIYPSEFGKERMKEEEVHGPPKELFKPVEEYKESESDDEEE 250 (650)
T ss_pred ccccceeeEeccccccccHHHHHHHHHhhcCCCCceeEEEechhhhhHHHhhhhcccCChhhhccccccCcccccchhhh
Confidence 467789999999998 7778999888765 478888776532 121
Q ss_pred ---------------c-ceEEEEEEcCHHHHHHHHHHhCCCccCCceEEEEE
Q 029496 60 ---------------S-KGTAEVVLTRRADAIAAVKRYNNVQLDGKPMKIEI 95 (192)
Q Consensus 60 ---------------~-~g~afV~f~~~~~a~~Ai~~l~~~~l~g~~i~V~~ 95 (192)
- .=||.|+|.+.+.|.+..+.++|+++...-..+.+
T Consensus 251 ~~~~~~kLR~Yq~~rLkYYyAVvecDsi~tA~~vYe~CDG~EfEsS~~~~DL 302 (650)
T KOG2318|consen 251 EDVDREKLRQYQLNRLKYYYAVVECDSIETAKAVYEECDGIEFESSANKLDL 302 (650)
T ss_pred hhHHHHHHHHHHhhhheeEEEEEEecCchHHHHHHHhcCcceeccccceeee
Confidence 0 12699999999999999999999999765444443
No 146
>KOG4285 consensus Mitotic phosphoprotein [Cell cycle control, cell division, chromosome partitioning]
Probab=91.54 E-value=1.1 Score=36.90 Aligned_cols=63 Identities=19% Similarity=0.282 Sum_probs=45.6
Q ss_pred CCCCCCCHHHHHHHhhhCCCeEEEEEEeCCCCCcceEEEEEEcCHHHHHHHHHHhCCCccCCce-EEEEEe
Q 029496 27 NLEYGVSNEDIKELFSEVGELKRCSVHFDRSGRSKGTAEVVLTRRADAIAAVKRYNNVQLDGKP-MKIEII 96 (192)
Q Consensus 27 nL~~~~te~~L~~~f~~~G~i~~v~i~~~~tg~~~g~afV~f~~~~~a~~Ai~~l~~~~l~g~~-i~V~~~ 96 (192)
++++.-. ..|..+|.+||+|.+.... .+ --+-+|.|.+..+|++||.+ ++..|++.. |-|...
T Consensus 204 GFppg~~-s~vL~~F~~cG~Vvkhv~~--~n---gNwMhirYssr~~A~KALsk-ng~ii~g~vmiGVkpC 267 (350)
T KOG4285|consen 204 GFPPGQV-SIVLNLFSRCGEVVKHVTP--SN---GNWMHIRYSSRTHAQKALSK-NGTIIDGDVMIGVKPC 267 (350)
T ss_pred ccCccch-hHHHHHHHhhCeeeeeecC--CC---CceEEEEecchhHHHHhhhh-cCeeeccceEEeeeec
Confidence 5555543 4567889999998765433 22 34889999999999999975 899888764 445443
No 147
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=91.38 E-value=1.3 Score=38.40 Aligned_cols=68 Identities=15% Similarity=0.174 Sum_probs=57.5
Q ss_pred CCEEEEcCCCCCCCHHHHHHHhhhC-CCeEEEEEEeCCCCCcceEEEEEEcCHHHHHHHHHHhCCCccCC
Q 029496 20 GTKLYISNLEYGVSNEDIKELFSEV-GELKRCSVHFDRSGRSKGTAEVVLTRRADAIAAVKRYNNVQLDG 88 (192)
Q Consensus 20 ~~~l~V~nL~~~~te~~L~~~f~~~-G~i~~v~i~~~~tg~~~g~afV~f~~~~~a~~Ai~~l~~~~l~g 88 (192)
+..|+|=.+|..++-.||-.|...+ -.|.+++|++|... .+=+..|.|.+.++|....+.+||..++.
T Consensus 74 ~~mLcilaVP~~mt~~Dll~F~~~~~~~I~~irivRd~~p-nrymvLIkFr~q~da~~Fy~efNGk~Fn~ 142 (493)
T KOG0804|consen 74 STMLCILAVPAYMTSHDLLRFCASFIKQISDIRIVRDGMP-NRYMVLIKFRDQADADTFYEEFNGKQFNS 142 (493)
T ss_pred CcEEEEEeccccccHHHHHHHHHHHhhhhheeEEeecCCC-ceEEEEEEeccchhHHHHHHHcCCCcCCC
Confidence 7899999999999999999888754 47889999986532 13468999999999999999999999875
No 148
>KOG4574 consensus RNA-binding protein (contains RRM and Pumilio-like repeats) [General function prediction only]
Probab=90.92 E-value=0.22 Score=46.06 Aligned_cols=74 Identities=18% Similarity=0.190 Sum_probs=59.5
Q ss_pred EEcCCCCCCCHHHHHHHhhhCCCeEEEEEEeCCCCCcceEEEEEEcCHHHHHHHHHHhCCCcc--CCceEEEEEeecCCC
Q 029496 24 YISNLEYGVSNEDIKELFSEVGELKRCSVHFDRSGRSKGTAEVVLTRRADAIAAVKRYNNVQL--DGKPMKIEIIGTNIG 101 (192)
Q Consensus 24 ~V~nL~~~~te~~L~~~f~~~G~i~~v~i~~~~tg~~~g~afV~f~~~~~a~~Ai~~l~~~~l--~g~~i~V~~~~~~~~ 101 (192)
++.|.+-..+...|..++.+||.|..+...++ .-+|.|+|.+.+.|-.|+++|++.++ .|-+.+|.+++.-..
T Consensus 302 ~~~nn~v~~tSssL~~l~s~yg~v~s~wtlr~-----~N~alvs~~s~~sai~a~dAl~gkevs~~g~Ps~V~~ak~~~~ 376 (1007)
T KOG4574|consen 302 SLENNAVNLTSSSLATLCSDYGSVASAWTLRD-----LNMALVSFSSVESAILALDALQGKEVSVTGAPSRVSFAKTLPM 376 (1007)
T ss_pred hhhcccccchHHHHHHHHHhhcchhhheeccc-----ccchhhhhHHHHHHHHhhhhhcCCcccccCCceeEEecccccc
Confidence 34445556677789999999999998877655 34799999999999999999999985 578899999876444
Q ss_pred C
Q 029496 102 P 102 (192)
Q Consensus 102 ~ 102 (192)
.
T Consensus 377 ~ 377 (1007)
T KOG4574|consen 377 Y 377 (1007)
T ss_pred c
Confidence 3
No 149
>KOG3973 consensus Uncharacterized conserved glycine-rich protein [Function unknown]
Probab=88.56 E-value=1.4 Score=37.05 Aligned_cols=6 Identities=67% Similarity=1.249 Sum_probs=2.2
Q ss_pred CCCCCC
Q 029496 156 RGRGRG 161 (192)
Q Consensus 156 ~~rg~~ 161 (192)
+++|++
T Consensus 376 gG~GGG 381 (465)
T KOG3973|consen 376 GGRGGG 381 (465)
T ss_pred CCCCCC
Confidence 333333
No 150
>KOG2193 consensus IGF-II mRNA-binding protein IMP, contains RRM and KH domains [RNA processing and modification; General function prediction only]
Probab=82.53 E-value=0.079 Score=45.33 Aligned_cols=78 Identities=19% Similarity=0.320 Sum_probs=63.2
Q ss_pred CCEEEEcCCCCCCCHHHHHHHhhhCCCeEEEEEEeCCCCCcceEEEEEEcCHHHHHHHHHHhCCCccCCceEEEEEeecC
Q 029496 20 GTKLYISNLEYGVSNEDIKELFSEVGELKRCSVHFDRSGRSKGTAEVVLTRRADAIAAVKRYNNVQLDGKPMKIEIIGTN 99 (192)
Q Consensus 20 ~~~l~V~nL~~~~te~~L~~~f~~~G~i~~v~i~~~~tg~~~g~afV~f~~~~~a~~Ai~~l~~~~l~g~~i~V~~~~~~ 99 (192)
..++-|.|+|+...|+.|..|+.+||.+..|..+...+ -.-..-|+|.+.+.++.||..|++..+....++|.+.-..
T Consensus 80 srk~Qirnippql~wevld~Ll~qyg~ve~~eqvnt~~--etavvnvty~~~~~~~~ai~kl~g~Q~en~~~k~~YiPde 157 (584)
T KOG2193|consen 80 SRKIQIRNIPPQLQWEVLDSLLAQYGTVENCEQVNTDS--ETAVVNVTYSAQQQHRQAIHKLNGPQLENQHLKVGYIPDE 157 (584)
T ss_pred hhhhhHhcCCHHHHHHHHHHHHhccCCHhHhhhhccch--HHHHHHHHHHHHHHHHHHHHhhcchHhhhhhhhcccCchh
Confidence 45688999999999999999999999998886543221 1223457899999999999999999999999998876543
No 151
>KOG4410 consensus 5-formyltetrahydrofolate cyclo-ligase [Coenzyme transport and metabolism]
Probab=80.65 E-value=7.8 Score=31.87 Aligned_cols=46 Identities=17% Similarity=0.163 Sum_probs=34.5
Q ss_pred CEEEEcCCCCCCCHHHHHHHhhhCCCe-EEEEEEeCCCCCcceEEEEEEcCH
Q 029496 21 TKLYISNLEYGVSNEDIKELFSEVGEL-KRCSVHFDRSGRSKGTAEVVLTRR 71 (192)
Q Consensus 21 ~~l~V~nL~~~~te~~L~~~f~~~G~i-~~v~i~~~~tg~~~g~afV~f~~~ 71 (192)
+-||++||+.++.-.||+..+.+.+-+ .++.+. -+.+-||+.|.+.
T Consensus 331 ~di~~~nl~rd~rv~dlk~~lr~~~~~pm~iswk-----g~~~k~flh~~~~ 377 (396)
T KOG4410|consen 331 TDIKLTNLSRDIRVKDLKSELRKRECTPMSISWK-----GHFGKCFLHFGNR 377 (396)
T ss_pred cceeeccCccccchHHHHHHHHhcCCCceeEeee-----cCCcceeEecCCc
Confidence 459999999999999999999876532 333332 3467899999654
No 152
>KOG4676 consensus Splicing factor, arginine/serine-rich [RNA processing and modification]
Probab=76.82 E-value=0.28 Score=41.69 Aligned_cols=72 Identities=11% Similarity=0.106 Sum_probs=52.9
Q ss_pred CEEEEcCCCCCCCHHHHHHHhhhCCCeEEEEEEeCCCCCcceEEEEEEcCHHHHHHHHHHhCCCccCCceEEEEEe
Q 029496 21 TKLYISNLEYGVSNEDIKELFSEVGELKRCSVHFDRSGRSKGTAEVVLTRRADAIAAVKRYNNVQLDGKPMKIEII 96 (192)
Q Consensus 21 ~~l~V~nL~~~~te~~L~~~f~~~G~i~~v~i~~~~tg~~~g~afV~f~~~~~a~~Ai~~l~~~~l~g~~i~V~~~ 96 (192)
.+|+|.+|+..+...++-++|..+|+|.+..+.. +...-+|-|+|....+...|+. +++..+.-+...+.+.
T Consensus 152 Rt~~v~sl~~~~~l~e~~e~f~r~Gev~ya~~as---k~~s~~c~~sf~~qts~~halr-~~gre~k~qhsr~ai~ 223 (479)
T KOG4676|consen 152 RTREVQSLISAAILPESGESFERKGEVSYAHTAS---KSRSSSCSHSFRKQTSSKHALR-SHGRERKRQHSRRAII 223 (479)
T ss_pred hhhhhhcchhhhcchhhhhhhhhcchhhhhhhhc---cCCCcchhhhHhhhhhHHHHHH-hcchhhhhhhhhhhhc
Confidence 5799999999999999999999999987765542 2334577799998888888875 4777665444444333
No 153
>KOG4365 consensus Uncharacterized conserved protein [Function unknown]
Probab=76.49 E-value=0.4 Score=41.35 Aligned_cols=77 Identities=4% Similarity=-0.139 Sum_probs=62.2
Q ss_pred CEEEEcCCCCCCCHHHHHHHhhhCCCeEEEEEEeCC-CCCcceEEEEEEcCHHHHHHHHHHhCCCccCCceEEEEEeec
Q 029496 21 TKLYISNLEYGVSNEDIKELFSEVGELKRCSVHFDR-SGRSKGTAEVVLTRRADAIAAVKRYNNVQLDGKPMKIEIIGT 98 (192)
Q Consensus 21 ~~l~V~nL~~~~te~~L~~~f~~~G~i~~v~i~~~~-tg~~~g~afV~f~~~~~a~~Ai~~l~~~~l~g~~i~V~~~~~ 98 (192)
++.|+..|+..+++.+|.-+|..|+-|..+.+.... .+...-.+||+-.. .++..+|..+.-..+.+..++|.++..
T Consensus 4 ~~~~l~d~~~~~~~~~~~~~~~d~~~i~~~d~~~~~~~~~~~v~~f~~~~~-~~~~~~i~~~k~q~~~~~~~r~~~~~~ 81 (572)
T KOG4365|consen 4 MKKSLKDSVASNNKDQNSMKHEDPSIISMEDGSPYVNGSLGEVTPFQHAKK-ANGPNYIQPQKRQTTFESQDRKAVSPS 81 (572)
T ss_pred hhhhHhhcccccccchhhhhccCCcceeeccCCccccCCcceeeeeeeeec-cCcccccCHHHHhhhhhhhhhhhcCch
Confidence 456778899999999999999999988887766554 56667789999875 778888888777778888888887754
No 154
>PF07530 PRE_C2HC: Associated with zinc fingers; InterPro: IPR006579 This domain is present in proteins found exclusively in the arthropods, including a number of Drosophila species, the silk moth and the gypsy moth. These proteins are possibly involved in RNA binding or single strand DNA binding.
Probab=76.25 E-value=7.1 Score=24.84 Aligned_cols=61 Identities=21% Similarity=0.262 Sum_probs=43.2
Q ss_pred HHHHHHhhhCC-CeEEEEEEeCC-CCCcceEEEEEEcCHHHHHHHHHHhCCCccCCceEEEEEeec
Q 029496 35 EDIKELFSEVG-ELKRCSVHFDR-SGRSKGTAEVVLTRRADAIAAVKRYNNVQLDGKPMKIEIIGT 98 (192)
Q Consensus 35 ~~L~~~f~~~G-~i~~v~i~~~~-tg~~~g~afV~f~~~~~a~~Ai~~l~~~~l~g~~i~V~~~~~ 98 (192)
++|.+.|...| .|..+.-+..+ +..+.-.-||+.....+.. +.|+=..|.++.|+|+....
T Consensus 2 ~~I~~~L~~~G~~v~~i~~~~~~~~k~pl~mf~veL~p~~~~k---~i~~Ik~l~~~~V~vE~~~k 64 (68)
T PF07530_consen 2 EEIKEELKDQGHPVRNIHNMHSRNTKKPLNMFFVELEPKPNNK---EIYKIKTLCGQRVKVERPRK 64 (68)
T ss_pred HHHHHHHHHcCCceEEEEccccCCCCCCceEEEEeeccCcccc---ceeehHhhCCeEEEEecCCC
Confidence 45667777666 67787777777 7777788899988655533 34566678888998887654
No 155
>KOG4483 consensus Uncharacterized conserved protein [Function unknown]
Probab=75.88 E-value=6.9 Score=33.63 Aligned_cols=58 Identities=17% Similarity=0.075 Sum_probs=46.1
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHhhhCCCe-EEEEEEeCCCCCcceEEEEEEcCHHHHHHHHH
Q 029496 16 SIESGTKLYISNLEYGVSNEDIKELFSEVGEL-KRCSVHFDRSGRSKGTAEVVLTRRADAIAAVK 79 (192)
Q Consensus 16 ~~~~~~~l~V~nL~~~~te~~L~~~f~~~G~i-~~v~i~~~~tg~~~g~afV~f~~~~~a~~Ai~ 79 (192)
..+=.+.|-|.++|.....+||..+|..|+.- -+|.++.|. .||-+|.+...|..||-
T Consensus 387 e~dlpHVlEIydfp~efkteDll~~f~~yq~kgfdIkWvDdt------halaVFss~~~AaeaLt 445 (528)
T KOG4483|consen 387 ESDLPHVLEIYDFPDEFKTEDLLKAFETYQNKGFDIKWVDDT------HALAVFSSVNRAAEALT 445 (528)
T ss_pred cccccceeEeccCchhhccHHHHHHHHHhhcCCceeEEeecc------eeEEeecchHHHHHHhh
Confidence 33455788999999999889999999999743 455565543 79999999999999985
No 156
>smart00596 PRE_C2HC PRE_C2HC domain.
Probab=75.23 E-value=6.6 Score=25.11 Aligned_cols=61 Identities=20% Similarity=0.244 Sum_probs=43.2
Q ss_pred HHHHHHhhhCC-CeEEEEEEeCC-CCCcceEEEEEEcCHHHHHHHHHHhCCCccCCceEEEEEeec
Q 029496 35 EDIKELFSEVG-ELKRCSVHFDR-SGRSKGTAEVVLTRRADAIAAVKRYNNVQLDGKPMKIEIIGT 98 (192)
Q Consensus 35 ~~L~~~f~~~G-~i~~v~i~~~~-tg~~~g~afV~f~~~~~a~~Ai~~l~~~~l~g~~i~V~~~~~ 98 (192)
++|++.|...| ++..+..+..+ +..+--+-||+.....+... .|+=..|.+++|.|+....
T Consensus 2 ~~I~~~L~~~G~~v~~i~~m~~~~~r~P~nmf~vel~~~~~~~~---Il~ik~Lg~~~V~VEr~~k 64 (69)
T smart00596 2 SQIEEALKDIGFPVLFIHNMLNRDTKNPQNMFEVELVPAANGKE---ILNIKTLGGQRVTVERPHK 64 (69)
T ss_pred HHHHHHHHHcCCceeEEEcccccCCCCcceeEEEEeeecCCCcc---eEeehhhCCeeEEEecCcc
Confidence 45777788777 67888777777 56666788888876543333 4566678899988886644
No 157
>PF10567 Nab6_mRNP_bdg: RNA-recognition motif; InterPro: IPR018885 This conserved domain is found in fungal proteins and appears to be involved in RNA-processing. It binds to poly-adenylated RNA, interacts genetically with mRNA 3'-end processing factors, co-purifies with the nuclear cap-binding protein Cbp20p, and is found in complexes containing other translation factors, such as EIF4G as in P39935 from SWISSPROT and P39936 from SWISSPROT.
Probab=74.95 E-value=8.5 Score=31.69 Aligned_cols=79 Identities=9% Similarity=0.221 Sum_probs=58.4
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHhhhCCCeEEEEEEeCC--------CCCcceEEEEEEcCHHHHHHH----HHHhCCC--
Q 029496 19 SGTKLYISNLEYGVSNEDIKELFSEVGELKRCSVHFDR--------SGRSKGTAEVVLTRRADAIAA----VKRYNNV-- 84 (192)
Q Consensus 19 ~~~~l~V~nL~~~~te~~L~~~f~~~G~i~~v~i~~~~--------tg~~~g~afV~f~~~~~a~~A----i~~l~~~-- 84 (192)
...+|.+.||...++-..+-..|.+||+|..|.++.+. ..+......+-|-+.+.+..- ++.|..+
T Consensus 14 rTRSLLfeNv~~sidLh~Fl~~fv~~~pIESiYL~~~~~~~~d~~~~d~~~~SilLSFlsr~~CLdFYNnvLQrLsEfK~ 93 (309)
T PF10567_consen 14 RTRSLLFENVNNSIDLHSFLTKFVKFGPIESIYLIKSNDKPSDDYNDDKNNQSILLSFLSREICLDFYNNVLQRLSEFKT 93 (309)
T ss_pred eeHHHHHhhccccccHHHHHHHhhccCceeEEEEecCCCcccccccccccceEEEEeeechHHHHHHHHHHHHHHHHHHH
Confidence 34578889999888888888889999999999998765 233456788899888877654 2333332
Q ss_pred ccCCceEEEEEee
Q 029496 85 QLDGKPMKIEIIG 97 (192)
Q Consensus 85 ~l~g~~i~V~~~~ 97 (192)
.|....|.|.+..
T Consensus 94 ~L~S~~L~lsFV~ 106 (309)
T PF10567_consen 94 KLKSESLTLSFVS 106 (309)
T ss_pred hcCCcceeEEEEE
Confidence 3677788887765
No 158
>KOG4454 consensus RNA binding protein (RRM superfamily) [General function prediction only]
Probab=71.91 E-value=0.93 Score=35.75 Aligned_cols=75 Identities=25% Similarity=0.342 Sum_probs=58.5
Q ss_pred CCCCEEEEcC----CCCCCCHHHHHHHhhhCCCeEEEEEEeCCCCCcceEEEEEEcCHHHHHHHHHHhCCCccCCceEE
Q 029496 18 ESGTKLYISN----LEYGVSNEDIKELFSEVGELKRCSVHFDRSGRSKGTAEVVLTRRADAIAAVKRYNNVQLDGKPMK 92 (192)
Q Consensus 18 ~~~~~l~V~n----L~~~~te~~L~~~f~~~G~i~~v~i~~~~tg~~~g~afV~f~~~~~a~~Ai~~l~~~~l~g~~i~ 92 (192)
+...+++.++ |...++++.++..|++.+.+..+++..+.++..+-+.|+++......-.++..++...+--+++.
T Consensus 78 e~q~~~r~G~shapld~r~~~ei~~~v~s~a~p~~~~R~~~~~d~rnrn~~~~~~qr~~~~P~~~~~y~~l~~~~~~~~ 156 (267)
T KOG4454|consen 78 EEQRTLRCGNSHAPLDERVTEEILYEVFSQAGPIEGVRIPTDNDGRNRNFGFVTYQRLCAVPFALDLYQGLELFQKKVT 156 (267)
T ss_pred hhhcccccCCCcchhhhhcchhhheeeecccCCCCCccccccccCCccCccchhhhhhhcCcHHhhhhcccCcCCCCcc
Confidence 3345667777 77788889999999999999999998888888899999999887777778777766654444433
No 159
>KOG4019 consensus Calcineurin-mediated signaling pathway inhibitor DSCR1 [Signal transduction mechanisms; General function prediction only]
Probab=69.71 E-value=4 Score=31.20 Aligned_cols=76 Identities=16% Similarity=0.198 Sum_probs=53.3
Q ss_pred CCCEEEEcCCCCCCCHH-----HHHHHhhhCCCeEEEEEEeCCCCCcceEEEEEEcCHHHHHHHHHHhCCCccCCc-eEE
Q 029496 19 SGTKLYISNLEYGVSNE-----DIKELFSEVGELKRCSVHFDRSGRSKGTAEVVLTRRADAIAAVKRYNNVQLDGK-PMK 92 (192)
Q Consensus 19 ~~~~l~V~nL~~~~te~-----~L~~~f~~~G~i~~v~i~~~~tg~~~g~afV~f~~~~~a~~Ai~~l~~~~l~g~-~i~ 92 (192)
-.+++.+.+++..+-.+ ..+.+|.+|-+.....+. ++.+..-|.|.+++.|..|...++...|.+. .++
T Consensus 9 lp~~~~~c~i~~~VF~~~~~k~~~~~lFrq~n~~~~fq~l-----rsfrrvRi~f~~p~~a~~a~i~~~~~~f~~~~~~k 83 (193)
T KOG4019|consen 9 LPTAIIACDIHEEVFVNREDKALFENLFRQINEDATFQLL-----RSFRRVRINFSNPEAAADARIKLHSTSFNGKNELK 83 (193)
T ss_pred ccceeeeecccHHhhccHHHHHHHHhHHhhhCcchHHHHH-----HhhceeEEeccChhHHHHHHHHhhhcccCCCceEE
Confidence 34567788888774432 345667777655444443 2345677899999999999999999999988 677
Q ss_pred EEEeecC
Q 029496 93 IEIIGTN 99 (192)
Q Consensus 93 V~~~~~~ 99 (192)
.-++.+.
T Consensus 84 ~yfaQ~~ 90 (193)
T KOG4019|consen 84 LYFAQPG 90 (193)
T ss_pred EEEccCC
Confidence 6666553
No 160
>KOG3262 consensus H/ACA small nucleolar RNP component GAR1 [Translation, ribosomal structure and biogenesis]
Probab=68.96 E-value=18 Score=27.80 Aligned_cols=7 Identities=29% Similarity=0.591 Sum_probs=3.5
Q ss_pred HHHHHHH
Q 029496 175 ADLEKYH 181 (192)
Q Consensus 175 ~el~~~~ 181 (192)
.||-.|+
T Consensus 54 velg~fl 60 (215)
T KOG3262|consen 54 VELGKFL 60 (215)
T ss_pred hhhhhhh
Confidence 3555554
No 161
>PF15513 DUF4651: Domain of unknown function (DUF4651)
Probab=67.98 E-value=16 Score=22.82 Aligned_cols=35 Identities=29% Similarity=0.426 Sum_probs=21.7
Q ss_pred HHHHHHhhhCCCeEEEEEEeCCCCCcceEEEEEEc
Q 029496 35 EDIKELFSEVGELKRCSVHFDRSGRSKGTAEVVLT 69 (192)
Q Consensus 35 ~~L~~~f~~~G~i~~v~i~~~~tg~~~g~afV~f~ 69 (192)
++|+++|+..|.|.-+.+..-.+...+-.+=|.|+
T Consensus 9 ~~iR~~fs~lG~I~vLYvn~~eS~~~~~~GGvV~e 43 (62)
T PF15513_consen 9 AEIRQFFSQLGEIAVLYVNPYESDEDRLTGGVVME 43 (62)
T ss_pred HHHHHHHHhcCcEEEEEEcccccCCCeEeccEEEe
Confidence 57999999999986655543334333434444444
No 162
>COG5638 Uncharacterized conserved protein [Function unknown]
Probab=66.68 E-value=26 Score=30.39 Aligned_cols=84 Identities=14% Similarity=0.248 Sum_probs=57.4
Q ss_pred cCCCCCCCCEEEEcCCCCC-CCHHHHHHHhhhC----CCeEEEEEEeCCCCC----------------------------
Q 029496 13 RSSSIESGTKLYISNLEYG-VSNEDIKELFSEV----GELKRCSVHFDRSGR---------------------------- 59 (192)
Q Consensus 13 ~~~~~~~~~~l~V~nL~~~-~te~~L~~~f~~~----G~i~~v~i~~~~tg~---------------------------- 59 (192)
.+...++..+|-|-|+.|+ +...+|...|+.| |.|..|.|....-|+
T Consensus 139 ~pe~G~~tkrLAvVnmDWd~v~a~DLf~~fsSf~P~ggkl~kV~iypsefGkeRm~~e~vqGpprdif~~~d~~~ssqk~ 218 (622)
T COG5638 139 VPEEGNPTKRLAVVNMDWDRVDAKDLFKIFSSFLPYGGKLSKVKIYPSEFGKERMAAEHVQGPPRDIFTPADNQPSSQKF 218 (622)
T ss_pred ccCCCCcccceeEeecccccchHHHHHHHHHhhCCCCCccceeEechhhhhHHHHhHhhccCCchhhccccccCcchhcc
Confidence 3344667789999999998 6677888888755 466666654321110
Q ss_pred ---------c-----------------------------ceEEEEEEcCHHHHHHHHHHhCCCccCCc--eEEEEEe
Q 029496 60 ---------S-----------------------------KGTAEVVLTRRADAIAAVKRYNNVQLDGK--PMKIEII 96 (192)
Q Consensus 60 ---------~-----------------------------~g~afV~f~~~~~a~~Ai~~l~~~~l~g~--~i~V~~~ 96 (192)
. .=||.|++.+.+.++.....+++.++... .+.+.+.
T Consensus 219 ~~dn~~sd~d~g~d~~~Egd~g~e~d~~~lrqyqlerlryYyAvvec~d~~tsK~iY~~CDG~Eye~san~~DLRfv 295 (622)
T COG5638 219 GDDNVFSDRDAGEDALIEGDRGNEFDMVKLRQYQLERLRYYYAVVECEDIETSKNIYSACDGVEYENSANVLDLRFV 295 (622)
T ss_pred CCccchhhhhcchhhhhhcccccchhHHHHHHHHhhhheeEEEEEEeccchhhHHHHhccCccccccccceeeeeec
Confidence 0 12688999999999999889999887643 4444443
No 163
>KOG2295 consensus C2H2 Zn-finger protein [General function prediction only]
Probab=65.73 E-value=0.78 Score=40.71 Aligned_cols=74 Identities=15% Similarity=0.163 Sum_probs=54.5
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHhhhCCCeEEEEEEeCC-CCCcceEEEEEEcCHHHHHHHHHHhCCCccCCc
Q 029496 16 SIESGTKLYISNLEYGVSNEDIKELFSEVGELKRCSVHFDR-SGRSKGTAEVVLTRRADAIAAVKRYNNVQLDGK 89 (192)
Q Consensus 16 ~~~~~~~l~V~nL~~~~te~~L~~~f~~~G~i~~v~i~~~~-tg~~~g~afV~f~~~~~a~~Ai~~l~~~~l~g~ 89 (192)
+....|+||+.|++++++-++|..++..+.-+..+.+.... ......+..|+|.-.-....|+.+|++..+...
T Consensus 227 n~hke~sll~rni~Pnis~aeIe~~ck~i~~~lrfals~~~aek~~~r~lwv~fk~~~ni~~a~~aLn~irl~s~ 301 (648)
T KOG2295|consen 227 NTHKECSLLVRNILPNISVAEIENLCKGIPGFLRFALSTINAEKNFERRLWVTFKRGTNIKEACWALNGIRLRSN 301 (648)
T ss_pred hhhHHHHHHHhccCCcccHHHHHHHhccCchheeeeccCchHHHHHHHHhhHhhccccchHHHHHHhhhcccccc
Confidence 34567899999999999999999999887655555554433 334456788999877778888888887765443
No 164
>PRK11901 hypothetical protein; Reviewed
Probab=63.39 E-value=36 Score=28.59 Aligned_cols=61 Identities=16% Similarity=0.135 Sum_probs=40.7
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHhhhCCCeEEEEEEeCC-CCCcceEEEE--EEcCHHHHHHHHHHhCC
Q 029496 18 ESGTKLYISNLEYGVSNEDIKELFSEVGELKRCSVHFDR-SGRSKGTAEV--VLTRRADAIAAVKRYNN 83 (192)
Q Consensus 18 ~~~~~l~V~nL~~~~te~~L~~~f~~~G~i~~v~i~~~~-tg~~~g~afV--~f~~~~~a~~Ai~~l~~ 83 (192)
....+|-|..+ ..++.|+.|..+++ +..+.+.... +|+ ..|..| .|.+.++|+.|+..|..
T Consensus 243 ~~~YTLQL~Aa---s~~~~L~~f~~~~~-L~~~~VYqT~RnGk-pWYVVvyG~Y~Sr~eAk~Ai~sLPa 306 (327)
T PRK11901 243 ASHYTLQLSSA---SRSDTLNAYAKKQN-LSHYHVYETKRDGK-PWYVLVSGNYASSAEAKRAIATLPA 306 (327)
T ss_pred CCCeEEEeecC---CCHHHHHHHHHHcC-cCceEEEEEEECCc-eEEEEEecCcCCHHHHHHHHHhCCH
Confidence 34456665544 46788888888775 4555555544 554 345444 78999999999988754
No 165
>PF03468 XS: XS domain; InterPro: IPR005380 The XS (rice gene X and SGS3) domain is found in a family of plant proteins including gene X Q9SBW2 from SWISSPROT and SGS3 Q9LDX1 from SWISSPROT. SGS3 is thought to be involved in post-transcriptional gene silencing (PTGS). This domain contains a conserved aspartate residue that may be functionally important. The XS domain containing proteins contain coiled-coils, which suggests that they will oligomerise. Most coiled-coil proteins form either a dimeric or a trimeric structure. It is possible that different members of the XS domain family could oligomerise via their coiled-coils forming a variety of complexes [].; PDB: 4E8U_C.
Probab=62.70 E-value=18 Score=25.60 Aligned_cols=44 Identities=23% Similarity=0.363 Sum_probs=25.9
Q ss_pred CHHHHHHHhhhCCCeEEEEEEeCCCCCcceEEEEEEcC-HHHHHHHH
Q 029496 33 SNEDIKELFSEVGELKRCSVHFDRSGRSKGTAEVVLTR-RADAIAAV 78 (192)
Q Consensus 33 te~~L~~~f~~~G~i~~v~i~~~~tg~~~g~afV~f~~-~~~a~~Ai 78 (192)
+.+.|.+.|..|..+ ++..+.++.+ +.+++.|+|.+ -.-...|+
T Consensus 30 ~~~~l~~~l~~f~p~-kv~~l~~~~g-h~g~aiv~F~~~w~Gf~~A~ 74 (116)
T PF03468_consen 30 SNEELLDKLAEFNPL-KVKPLYGKQG-HTGFAIVEFNKDWSGFKNAM 74 (116)
T ss_dssp -SHHHHHHHHH---S-EEEEEEETTE-EEEEEEEE--SSHHHHHHHH
T ss_pred CHHHHHHHHHhcCCc-eeEECcCCCC-CcEEEEEEECCChHHHHHHH
Confidence 447899999999876 4556666543 47899999974 44445554
No 166
>KOG1295 consensus Nonsense-mediated decay protein Upf3 [RNA processing and modification]
Probab=61.82 E-value=8.4 Score=32.80 Aligned_cols=68 Identities=13% Similarity=0.157 Sum_probs=47.3
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHhhhCCC-eEEEEEE-eCC--CCCcceEEEEEEcCHHHHHHHHHHhCCCcc
Q 029496 19 SGTKLYISNLEYGVSNEDIKELFSEVGE-LKRCSVH-FDR--SGRSKGTAEVVLTRRADAIAAVKRYNNVQL 86 (192)
Q Consensus 19 ~~~~l~V~nL~~~~te~~L~~~f~~~G~-i~~v~i~-~~~--tg~~~g~afV~f~~~~~a~~Ai~~l~~~~l 86 (192)
--+.|.|.+||+..++.+|.+.+..+-. +....+. .+. -..-...|||.|.+.++...-...++++.+
T Consensus 6 ~~~Kvv~rrlpp~l~~~~~~eqi~p~~~~v~~~~F~~a~~s~~~~~ysrayinFk~~~dv~ef~~~f~g~if 77 (376)
T KOG1295|consen 6 AKVKVVVRRLPPKLTEEQLLEQINPFPEHVNWEFFAKADESLRNHKYSRAYINFKNPEDVEEFRRRFDGYIF 77 (376)
T ss_pred cceeeeeecCCCcccHHHHhhhcCCCccccchheeccccccchhhhhhhhhhccccHHHHHHHHhhCCceEE
Confidence 3467889999999999998887776542 2222332 111 122256799999999998888888888764
No 167
>PF02714 DUF221: Domain of unknown function DUF221; InterPro: IPR003864 This domain is found in a family of hypothetical transmembrane proteins none of which have any known function, the aligned region is at 538 residues at maximum length.; GO: 0016020 membrane
Probab=60.34 E-value=12 Score=30.81 Aligned_cols=34 Identities=12% Similarity=0.047 Sum_probs=24.4
Q ss_pred EEEEEcCHHHHHHHHHHhCCCccCCceEEEEEeecC
Q 029496 64 AEVVLTRRADAIAAVKRYNNVQLDGKPMKIEIIGTN 99 (192)
Q Consensus 64 afV~f~~~~~a~~Ai~~l~~~~l~g~~i~V~~~~~~ 99 (192)
|||+|++..+|+.|++.+....- ..+.|+.|-++
T Consensus 1 aFVtF~~~~~a~~~~q~~~~~~~--~~~~v~~APeP 34 (325)
T PF02714_consen 1 AFVTFNSQKSAQIALQLLLSKRP--NSWRVSPAPEP 34 (325)
T ss_pred CEEEECCHHHHHHHHHHHhcCCC--CCceEeeCCCc
Confidence 79999999999999986544433 44566666443
No 168
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=60.02 E-value=12 Score=28.90 Aligned_cols=62 Identities=24% Similarity=0.373 Sum_probs=43.1
Q ss_pred CCCCCCCEEEEcCCCCCCCHHHHHHHhhhCCCeEEEEEEeCC-CCCcceEEEEEEcCHHHHHH
Q 029496 15 SSIESGTKLYISNLEYGVSNEDIKELFSEVGELKRCSVHFDR-SGRSKGTAEVVLTRRADAIA 76 (192)
Q Consensus 15 ~~~~~~~~l~V~nL~~~~te~~L~~~f~~~G~i~~v~i~~~~-tg~~~g~afV~f~~~~~a~~ 76 (192)
........+++.+++..++..++..+|..++.+..+.+.... ......+.++.+.....+..
T Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 282 (306)
T COG0724 220 LLLEKSDNLYVGNLPLKTAEEELADLFKSRGDIVRASLPPSKDGKIPKSRSFVGNEASKDALE 282 (306)
T ss_pred ccccccceeeccccccccchhHHHHhccccccceeeeccCCCCCcccccccccchhHHHhhhh
Confidence 355667899999999999999999999999999777766655 22233344444443333333
No 169
>PRK10590 ATP-dependent RNA helicase RhlE; Provisional
Probab=57.81 E-value=74 Score=27.76 Aligned_cols=7 Identities=29% Similarity=0.416 Sum_probs=2.9
Q ss_pred eEEEEEE
Q 029496 62 GTAEVVL 68 (192)
Q Consensus 62 g~afV~f 68 (192)
|.|++.+
T Consensus 343 G~ai~l~ 349 (456)
T PRK10590 343 GEALSLV 349 (456)
T ss_pred eeEEEEe
Confidence 4444333
No 170
>PRK10629 EnvZ/OmpR regulon moderator; Provisional
Probab=52.77 E-value=84 Score=22.57 Aligned_cols=72 Identities=11% Similarity=0.087 Sum_probs=48.3
Q ss_pred CCCEEEEcCCCCC---CCHHHHHHHhhhCC-CeEEEEEEeCCCCCcceEEEEEEcCHHHHHHHHHHhCCCccCCceEEEE
Q 029496 19 SGTKLYISNLEYG---VSNEDIKELFSEVG-ELKRCSVHFDRSGRSKGTAEVVLTRRADAIAAVKRYNNVQLDGKPMKIE 94 (192)
Q Consensus 19 ~~~~l~V~nL~~~---~te~~L~~~f~~~G-~i~~v~i~~~~tg~~~g~afV~f~~~~~a~~Ai~~l~~~~l~g~~i~V~ 94 (192)
+...|.|+..... .+-..++..+.+-| .++.+... .....|.|.+.++..+|.+.|...-=++..|.+.
T Consensus 34 edpavQIs~~~~g~~~~~~~~v~~~L~~~gI~~ksi~~~-------~~~~~irf~~~~~Ql~Ak~vL~~~L~~~y~VAln 106 (127)
T PRK10629 34 QESTLAIRAVHQGASLPDGFYVYQHLDANGIHIKSITPE-------NDSLLIRFDSPEQSAAAKEVLDRTLPHGYIIAQQ 106 (127)
T ss_pred CCceEEEecCCCCCccchHHHHHHHHHHCCCCcceEEee-------CCEEEEEECCHHHHHHHHHHHHHHcCCCCEEEEe
Confidence 4457777766444 45567888888776 34454443 2367899999999999998887665555666655
Q ss_pred Eee
Q 029496 95 IIG 97 (192)
Q Consensus 95 ~~~ 97 (192)
++.
T Consensus 107 l~p 109 (127)
T PRK10629 107 DDN 109 (127)
T ss_pred cCC
Confidence 553
No 171
>KOG4008 consensus rRNA processing protein RRP7 [RNA processing and modification]
Probab=51.50 E-value=15 Score=29.40 Aligned_cols=36 Identities=19% Similarity=0.361 Sum_probs=30.0
Q ss_pred CCCCCCCEEEEcCCCCCCCHHHHHHHhhhCCCeEEE
Q 029496 15 SSIESGTKLYISNLEYGVSNEDIKELFSEVGELKRC 50 (192)
Q Consensus 15 ~~~~~~~~l~V~nL~~~~te~~L~~~f~~~G~i~~v 50 (192)
+......++|+-|+|..+|++.|..+.+++|-+..+
T Consensus 35 s~~~eKd~lfl~Nvp~~~tee~lkr~vsqlg~vq~~ 70 (261)
T KOG4008|consen 35 SNSNEKDCLFLVNVPLLSTEEHLKRFVSQLGHVQEL 70 (261)
T ss_pred cccccccceeeecccccccHHHHHHHHHHhhhhhhe
Confidence 456677799999999999999999999999854443
No 172
>COG4907 Predicted membrane protein [Function unknown]
Probab=47.50 E-value=20 Score=31.60 Aligned_cols=14 Identities=7% Similarity=0.304 Sum_probs=7.1
Q ss_pred HHHHHHHHHhCCCc
Q 029496 72 ADAIAAVKRYNNVQ 85 (192)
Q Consensus 72 ~~a~~Ai~~l~~~~ 85 (192)
+.+.+|++.+...+
T Consensus 526 dkVvkam~~~~~~e 539 (595)
T COG4907 526 DKVVKAMRKALDME 539 (595)
T ss_pred HHHHHHHHHhCcHh
Confidence 45555655544433
No 173
>PF07292 NID: Nmi/IFP 35 domain (NID); InterPro: IPR009909 This entry represents a domain of approximately 90 residues that is tandemly repeated within interferon-induced 35 kDa protein (IFP 35) and the homologous N-myc-interactor (Nmi). This domain mediates Nmi-Nmi protein interactions and subcellular localisation [].
Probab=47.00 E-value=12 Score=25.21 Aligned_cols=24 Identities=13% Similarity=0.285 Sum_probs=20.3
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHh
Q 029496 18 ESGTKLYISNLEYGVSNEDIKELF 41 (192)
Q Consensus 18 ~~~~~l~V~nL~~~~te~~L~~~f 41 (192)
....+|.|.|||....+++|++.+
T Consensus 50 vs~rtVlvsgip~~l~ee~l~D~L 73 (88)
T PF07292_consen 50 VSKRTVLVSGIPDVLDEEELRDKL 73 (88)
T ss_pred ccCCEEEEeCCCCCCChhhheeeE
Confidence 456789999999999999998665
No 174
>PF09707 Cas_Cas2CT1978: CRISPR-associated protein (Cas_Cas2CT1978); InterPro: IPR010152 Clustered Regularly Interspaced Short Palindromic Repeats (CRISPR) are a family of DNA direct repeats separated by regularly sized non-repetitive spacer sequences that are found in most bacterial and archaeal genomes []. CRISPRs appear to provide acquired resistance against bacteriophages, possibly acting with an RNA interference-like mechanism to inhibit gene functions of invasive DNA elements [, ]. Differences in the number and type of spacers between CRISPR repeats correlate with phage sensitivity. It is thought that following phage infection, bacteria integrate new spacers derived from phage genomic sequences, and that the removal or addition of particular spacers modifies the phage-resistance phenotype of the cell. Therefore, the specificity of CRISPRs may be determined by spacer-phage sequence similarity. In addition, there are many protein families known as CRISPR-associated sequences (Cas), which are encoded in the vicinity of CRISPR loci []. CRISPR/cas gene regions can be quite large, with up to 20 different, tandem-arranged cas genes next to a CRISPR cluster or filling the region between two repeat clusters. Cas genes and CRISPRs are found on mobile genetic elements such as plasmids, and have undergone extensive horizontal transfer. Cas proteins are thought to be involved in the propagation and functioning of CRISPRs. Some Cas proteins show similarity to helicases and repair proteins, although the functions of most are unknown. Cas families can be divided into subtypes according to operon organisation and phylogeny. This entry represents a minor branch of the Cas2 family of CRISPR-associated protein which are found in IPR003799 from INTERPRO. Cas2 is one of four protein families (Cas1 to Cas4) that are associated with CRISPR elements and always occur near a repeat cluster, usually in the order cas3-cas4-cas1-cas2. The function of Cas2 (and Cas1) is unknown. Cas3 proteins appear to be helicases while Cas4 proteins resemble RecB-type exonucleases, suggesting that these genes are involved in DNA metabolism or gene expression [].
Probab=44.92 E-value=56 Score=21.85 Aligned_cols=50 Identities=14% Similarity=0.176 Sum_probs=32.6
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHhhhCCCeEEEEEEeCCCCCcceEEEEEEc
Q 029496 18 ESGTKLYISNLEYGVSNEDIKELFSEVGELKRCSVHFDRSGRSKGTAEVVLT 69 (192)
Q Consensus 18 ~~~~~l~V~nL~~~~te~~L~~~f~~~G~i~~v~i~~~~tg~~~g~afV~f~ 69 (192)
+...-|||++++..+.|.-.+.+....+.- .+.++..... ..||.|-++-
T Consensus 23 Ei~~GVyVg~~s~rVRe~lW~~v~~~~~~G-~a~m~~~~~n-eqG~~~~t~G 72 (86)
T PF09707_consen 23 EIRPGVYVGNVSARVRERLWERVTEWIGDG-SAVMVWSDNN-EQGFDFRTLG 72 (86)
T ss_pred ecCCCcEEcCCCHHHHHHHHHHHHhhCCCc-cEEEEEccCC-CCCEEEEEeC
Confidence 345679999999998877666665544432 3334433322 6789998884
No 175
>KOG4213 consensus RNA-binding protein La [RNA processing and modification]
Probab=43.61 E-value=67 Score=24.72 Aligned_cols=49 Identities=14% Similarity=0.272 Sum_probs=33.8
Q ss_pred CCHHHHHHHhh-hCCCeEEEEEEeCCCC--CcceEEEEEEcCHHHHHHHHHH
Q 029496 32 VSNEDIKELFS-EVGELKRCSVHFDRSG--RSKGTAEVVLTRRADAIAAVKR 80 (192)
Q Consensus 32 ~te~~L~~~f~-~~G~i~~v~i~~~~tg--~~~g~afV~f~~~~~a~~Ai~~ 80 (192)
.|++.|.++.. .-+.+..+.+-....+ ..+|.-||+|.+.+.|.++++.
T Consensus 118 ~td~ql~~l~qw~~~k~~nv~mr~~~~k~~~fkGsvkv~f~tk~qa~a~~~~ 169 (205)
T KOG4213|consen 118 ITDDQLDDLNQWASGKGHNVKMRRHGNKAHPFKGSVKVTFQTKEQAFANDDT 169 (205)
T ss_pred CCHHHHHHHHHHhcccceEeeccccCCCCCCCCCceEEEeecHHHHHhhhhh
Confidence 45666655543 2267777766554444 5678899999999999987754
No 176
>PF15502 MPLKIP: M-phase-specific PLK1-interacting protein
Probab=42.86 E-value=42 Score=24.84 Aligned_cols=13 Identities=23% Similarity=0.358 Sum_probs=9.8
Q ss_pred HHHHHHHHhhhcC
Q 029496 176 DLEKYHIEAKQSD 188 (192)
Q Consensus 176 el~~~~~~~~~~~ 188 (192)
+.+.|++..|.||
T Consensus 115 ~ie~Yy~pSMLED 127 (151)
T PF15502_consen 115 GIEQYYHPSMLED 127 (151)
T ss_pred CHHHhcCHHhhhC
Confidence 7777777777776
No 177
>PF14893 PNMA: PNMA
Probab=41.04 E-value=31 Score=29.10 Aligned_cols=27 Identities=11% Similarity=0.294 Sum_probs=22.8
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHhh
Q 029496 16 SIESGTKLYISNLEYGVSNEDIKELFS 42 (192)
Q Consensus 16 ~~~~~~~l~V~nL~~~~te~~L~~~f~ 42 (192)
..+..+.|.|.+||.+|++++|++.+.
T Consensus 14 ~~~~~r~lLv~giP~dc~~~ei~e~l~ 40 (331)
T PF14893_consen 14 GVDPQRALLVLGIPEDCEEAEIEEALQ 40 (331)
T ss_pred CcChhhhheeecCCCCCCHHHHHHHHH
Confidence 456678899999999999999887764
No 178
>KOG1784 consensus Small Nuclear ribonucleoprotein splicing factor [RNA processing and modification]
Probab=40.50 E-value=14 Score=24.91 Aligned_cols=24 Identities=33% Similarity=0.416 Sum_probs=19.7
Q ss_pred CHHhHhHHHHHHHHHhhhcCCCCC
Q 029496 169 SVEDLDADLEKYHIEAKQSDGMVH 192 (192)
Q Consensus 169 ~~~~lD~el~~~~~~~~~~~~~~~ 192 (192)
-.|+||++||.-.-++.+..-|||
T Consensus 73 iDEe~d~~ld~tkir~epl~~v~h 96 (96)
T KOG1784|consen 73 IDEELDSRLDLTKIRAEPLHPVVH 96 (96)
T ss_pred cchhhhhhhhhhhcccCCCCCccC
Confidence 568888888888888888888877
No 179
>PRK06958 single-stranded DNA-binding protein; Provisional
Probab=39.27 E-value=1.4e+02 Score=22.96 Aligned_cols=13 Identities=15% Similarity=0.212 Sum_probs=8.4
Q ss_pred CCEEEEcCCCCCC
Q 029496 20 GTKLYISNLEYGV 32 (192)
Q Consensus 20 ~~~l~V~nL~~~~ 32 (192)
.+.+.|++|-.+.
T Consensus 5 N~V~LiGrLg~DP 17 (182)
T PRK06958 5 NKVILVGNLGADP 17 (182)
T ss_pred cEEEEEEEecCCC
Confidence 4556778887654
No 180
>COG4907 Predicted membrane protein [Function unknown]
Probab=38.85 E-value=32 Score=30.33 Aligned_cols=8 Identities=25% Similarity=0.086 Sum_probs=3.5
Q ss_pred HHHHHHhC
Q 029496 75 IAAVKRYN 82 (192)
Q Consensus 75 ~~Ai~~l~ 82 (192)
++.+++|.
T Consensus 526 dkVvkam~ 533 (595)
T COG4907 526 DKVVKAMR 533 (595)
T ss_pred HHHHHHHH
Confidence 44444443
No 181
>PF00403 HMA: Heavy-metal-associated domain; InterPro: IPR006121 Proteins that transport heavy metals in micro-organisms and mammals share similarities in their sequences and structures. These proteins provide an important focus for research, some being involved in bacterial resistance to toxic metals, such as lead and cadmium, while others are involved in inherited human syndromes, such as Wilson's and Menke's diseases []. A conserved domain has been found in a number of these heavy metal transport or detoxification proteins []. The domain, which has been termed Heavy-Metal-Associated (HMA), contains two conserved cysteines that are probably involved in metal binding. Structure solution of the fourth HMA domain of the Menke's copper transporting ATPase shows a well-defined structure comprising a four-stranded antiparallel beta-sheet and two alpha helices packed in an alpha-beta sandwich fold []. This fold is common to other domains and is classified as "ferredoxin-like".; GO: 0046872 metal ion binding, 0030001 metal ion transport; PDB: 2VOY_A 1P6T_A 1KQK_A 2RML_A 1JWW_A 3K7R_F 1FES_A 1CC8_A 1FD8_A 2GGP_A ....
Probab=38.78 E-value=86 Score=18.64 Aligned_cols=54 Identities=13% Similarity=0.266 Sum_probs=38.3
Q ss_pred EEEEcCCCCCCCHHHHHHHhhhCCCeEEEEEEeCCCCCcceEEEEEEcCH----HHHHHHHHH
Q 029496 22 KLYISNLEYGVSNEDIKELFSEVGELKRCSVHFDRSGRSKGTAEVVLTRR----ADAIAAVKR 80 (192)
Q Consensus 22 ~l~V~nL~~~~te~~L~~~f~~~G~i~~v~i~~~~tg~~~g~afV~f~~~----~~a~~Ai~~ 80 (192)
++.|.|+.-..-...++..+...-.|..+.+... .+.+-|+|... ++..++|+.
T Consensus 1 t~~v~~m~C~~C~~~v~~~l~~~~GV~~v~vd~~-----~~~v~v~~~~~~~~~~~i~~~i~~ 58 (62)
T PF00403_consen 1 TFKVPGMTCEGCAKKVEKALSKLPGVKSVKVDLE-----TKTVTVTYDPDKTSIEKIIEAIEK 58 (62)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTSTTEEEEEEETT-----TTEEEEEESTTTSCHHHHHHHHHH
T ss_pred CEEECCcccHHHHHHHHHHHhcCCCCcEEEEECC-----CCEEEEEEecCCCCHHHHHHHHHH
Confidence 4677777777677888888888877888877543 35788888743 555666654
No 182
>PF03791 KNOX2: KNOX2 domain ; InterPro: IPR005541 The MEINOX region is comprised of two domains, KNOX1 and KNOX2. KNOX1 plays a role in suppressing target gene expression. KNOX2, essential for function, is thought to be necessary for homo-dimerization [].; GO: 0003677 DNA binding, 0005634 nucleus
Probab=37.36 E-value=14 Score=22.23 Aligned_cols=10 Identities=20% Similarity=0.527 Sum_probs=5.3
Q ss_pred HhHHHHHHHH
Q 029496 173 LDADLEKYHI 182 (192)
Q Consensus 173 lD~el~~~~~ 182 (192)
.|.|||.||+
T Consensus 7 ~dpELDqFMe 16 (52)
T PF03791_consen 7 ADPELDQFME 16 (52)
T ss_pred CCccHHHHHH
Confidence 3555555554
No 183
>PRK11230 glycolate oxidase subunit GlcD; Provisional
Probab=37.11 E-value=1.4e+02 Score=26.56 Aligned_cols=49 Identities=16% Similarity=0.084 Sum_probs=36.0
Q ss_pred HHHHHHHhh----hCCCeEEEEEEeCCCCCcceEEEEEEcCHHHHHHHHHHhC
Q 029496 34 NEDIKELFS----EVGELKRCSVHFDRSGRSKGTAEVVLTRRADAIAAVKRYN 82 (192)
Q Consensus 34 e~~L~~~f~----~~G~i~~v~i~~~~tg~~~g~afV~f~~~~~a~~Ai~~l~ 82 (192)
..+|..+|. .+|-|.++.+...+.-......++.|.+.+++..++..+.
T Consensus 203 g~dl~~l~~Gs~GtlGIIt~atlkl~p~p~~~~~~~~~f~~~~~a~~~~~~~~ 255 (499)
T PRK11230 203 GFDLLALFTGSEGMLGVVTEVTVKLLPKPPVARVLLASFDSVEKAGLAVGDII 255 (499)
T ss_pred ccchHhhhccCCCccEEEEEEEEEEEcCCcceEEEEEECCCHHHHHHHHHHHH
Confidence 346767664 6778888877766644445677899999999999987754
No 184
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=36.58 E-value=82 Score=28.98 Aligned_cols=9 Identities=11% Similarity=0.213 Sum_probs=4.0
Q ss_pred HHHHHHHHH
Q 029496 71 RADAIAAVK 79 (192)
Q Consensus 71 ~~~a~~Ai~ 79 (192)
+.....||.
T Consensus 501 ~~~~~~~i~ 509 (629)
T PRK11634 501 VRHIVGAIA 509 (629)
T ss_pred HHHHHHHHH
Confidence 344444443
No 185
>PRK10590 ATP-dependent RNA helicase RhlE; Provisional
Probab=36.18 E-value=91 Score=27.18 Aligned_cols=10 Identities=10% Similarity=-0.223 Sum_probs=4.0
Q ss_pred EEEEcCHHHH
Q 029496 65 EVVLTRRADA 74 (192)
Q Consensus 65 fV~f~~~~~a 74 (192)
.|.|.-+.+.
T Consensus 317 VI~~~~P~~~ 326 (456)
T PRK10590 317 VVNYELPNVP 326 (456)
T ss_pred EEEeCCCCCH
Confidence 3344433333
No 186
>PF11823 DUF3343: Protein of unknown function (DUF3343); InterPro: IPR021778 This family of proteins are functionally uncharacterised. This protein is found in bacteria and archaea. Proteins in this family are typically between 78 to 102 amino acids in length.
Probab=35.32 E-value=55 Score=20.69 Aligned_cols=26 Identities=15% Similarity=0.066 Sum_probs=20.8
Q ss_pred EEEEEEcCHHHHHHHHHHhCCCccCC
Q 029496 63 TAEVVLTRRADAIAAVKRYNNVQLDG 88 (192)
Q Consensus 63 ~afV~f~~~~~a~~Ai~~l~~~~l~g 88 (192)
+.+|+|.+..+|.+|-+.|....+..
T Consensus 3 ~~~i~F~st~~a~~~ek~lk~~gi~~ 28 (73)
T PF11823_consen 3 YYLITFPSTHDAMKAEKLLKKNGIPV 28 (73)
T ss_pred eEEEEECCHHHHHHHHHHHHHCCCcE
Confidence 67999999999999988776655533
No 187
>PRK11558 putative ssRNA endonuclease; Provisional
Probab=34.76 E-value=80 Score=21.64 Aligned_cols=51 Identities=8% Similarity=0.122 Sum_probs=31.8
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHhhhCCCeEEEEEEeCCCCCcceEEEEEEcC
Q 029496 18 ESGTKLYISNLEYGVSNEDIKELFSEVGELKRCSVHFDRSGRSKGTAEVVLTR 70 (192)
Q Consensus 18 ~~~~~l~V~nL~~~~te~~L~~~f~~~G~i~~v~i~~~~tg~~~g~afV~f~~ 70 (192)
+...-|||++++..+.+.-.+.+-+.++. -.+.++...+ ...||.|-++.+
T Consensus 25 Ev~~GVyVg~~S~rVRd~lW~~v~~~~~~-G~avmv~~~~-~eqG~~~~t~G~ 75 (97)
T PRK11558 25 EVRAGVYVGDVSRRIREMIWQQVTQLAEE-GNVVMAWATN-TESGFEFQTFGE 75 (97)
T ss_pred ecCCCcEEcCCCHHHHHHHHHHHHHhCCC-CcEEEEEcCC-CCCCcEEEecCC
Confidence 34567999999988887655555555543 2333333222 334899998875
No 188
>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]
Probab=33.33 E-value=52 Score=26.72 Aligned_cols=35 Identities=17% Similarity=0.183 Sum_probs=25.6
Q ss_pred CCEEEEcCCCCCCCHHHHHHHhhhCCCeEEEEEEe
Q 029496 20 GTKLYISNLEYGVSNEDIKELFSEVGELKRCSVHF 54 (192)
Q Consensus 20 ~~~l~V~nL~~~~te~~L~~~f~~~G~i~~v~i~~ 54 (192)
.....|+|||++++..-|..++...-.+....++.
T Consensus 95 ~~~~vVaNlPY~Isspii~kll~~~~~~~~~v~M~ 129 (259)
T COG0030 95 QPYKVVANLPYNISSPILFKLLEEKFIIQDMVLMV 129 (259)
T ss_pred CCCEEEEcCCCcccHHHHHHHHhccCccceEEEEe
Confidence 34566899999999999999987654544444443
No 189
>COG3254 Uncharacterized conserved protein [Function unknown]
Probab=33.27 E-value=1.7e+02 Score=20.37 Aligned_cols=40 Identities=15% Similarity=0.189 Sum_probs=26.6
Q ss_pred HHHHHHhhhCCCeEEEEEEeCC-CCCcceEEEEEEcCHHHHHHH
Q 029496 35 EDIKELFSEVGELKRCSVHFDR-SGRSKGTAEVVLTRRADAIAA 77 (192)
Q Consensus 35 ~~L~~~f~~~G~i~~v~i~~~~-tg~~~g~afV~f~~~~~a~~A 77 (192)
.+|.++++.+| |.+-.|..+. ++ .-|+++++.+.+..-++
T Consensus 27 PE~~a~lk~ag-i~nYSIfLde~~n--~lFgy~E~~d~~a~m~~ 67 (105)
T COG3254 27 PELLALLKEAG-IRNYSIFLDEEEN--LLFGYWEYEDFEADMAK 67 (105)
T ss_pred HHHHHHHHHcC-CceeEEEecCCcc--cEEEEEEEcChHHHHHH
Confidence 36778888997 5555566665 43 56999999854444333
No 190
>KOG2891 consensus Surface glycoprotein [General function prediction only]
Probab=32.22 E-value=65 Score=26.56 Aligned_cols=36 Identities=11% Similarity=0.371 Sum_probs=26.6
Q ss_pred CCCEEEEcCCCCC------------CCHHHHHHHhhhCCCeEEEEEEe
Q 029496 19 SGTKLYISNLEYG------------VSNEDIKELFSEVGELKRCSVHF 54 (192)
Q Consensus 19 ~~~~l~V~nL~~~------------~te~~L~~~f~~~G~i~~v~i~~ 54 (192)
..-+||+.+||-. .+++-|...|..||.|..|.|+.
T Consensus 148 rpdti~la~ip~kwf~lkedg~~dlpse~rlr~a~eafg~ir~vdipi 195 (445)
T KOG2891|consen 148 RPDTIHLAGIPCKWFALKEDGSEDLPSEDRLRKAFEAFGEIRNVDIPI 195 (445)
T ss_pred CCCceeecCCcceeeeecccccccCChHHHHHHHHHHhccceecCCcc
Confidence 3457777777642 35667999999999998887754
No 191
>PRK10905 cell division protein DamX; Validated
Probab=32.13 E-value=2.6e+02 Score=23.59 Aligned_cols=59 Identities=19% Similarity=0.159 Sum_probs=36.7
Q ss_pred CCEEEEcCCCCCCCHHHHHHHhhhCCCeEEEEEEeCC-CCCcceEEEE--EEcCHHHHHHHHHHhCC
Q 029496 20 GTKLYISNLEYGVSNEDIKELFSEVGELKRCSVHFDR-SGRSKGTAEV--VLTRRADAIAAVKRYNN 83 (192)
Q Consensus 20 ~~~l~V~nL~~~~te~~L~~~f~~~G~i~~v~i~~~~-tg~~~g~afV--~f~~~~~a~~Ai~~l~~ 83 (192)
..+|-|..+. +++.|+.|..+.+ +....+.... +|+. .|-.+ .|.+.++|++|+..|-.
T Consensus 247 ~YTLQL~A~S---s~~~l~~fakKlg-L~~y~vy~TtRnGkp-WYVV~yG~YaSraeAk~AiakLPa 308 (328)
T PRK10905 247 HYTLQLSSSS---NYDNLNGWAKKEN-LKNYVVYETTRNGQP-WYVLVSGVYASKEEAKRAVSTLPA 308 (328)
T ss_pred ceEEEEEecC---CHHHHHHHHHHcC-CCceEEEEeccCCce-EEEEEecCCCCHHHHHHHHHHCCH
Confidence 3455555444 6678888888775 3333333333 5542 34333 78999999999998743
No 192
>KOG0156 consensus Cytochrome P450 CYP2 subfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=32.08 E-value=1.2e+02 Score=27.04 Aligned_cols=59 Identities=17% Similarity=0.200 Sum_probs=43.5
Q ss_pred EEcCCCCCCCH---HHHHHHhhhCCCeEEEEEEeCCCCCcceEEEEEEcCHHHHHHHHHHhCCCccCCceE
Q 029496 24 YISNLEYGVSN---EDIKELFSEVGELKRCSVHFDRSGRSKGTAEVVLTRRADAIAAVKRYNNVQLDGKPM 91 (192)
Q Consensus 24 ~V~nL~~~~te---~~L~~~f~~~G~i~~v~i~~~~tg~~~g~afV~f~~~~~a~~Ai~~l~~~~l~g~~i 91 (192)
+||||+.-... ..|..+=.+||.|-.+.+-. .-.|...+.+.|+.|+.. ++..+.++..
T Consensus 36 iIGnl~~l~~~~~h~~~~~ls~~yGpi~tl~lG~--------~~~Vviss~~~akE~l~~-~d~~fa~Rp~ 97 (489)
T KOG0156|consen 36 IIGNLHQLGSLPPHRSFRKLSKKYGPVFTLRLGS--------VPVVVISSYEAAKEVLVK-QDLEFADRPD 97 (489)
T ss_pred ccccHHHcCCCchhHHHHHHHHHhCCeEEEEecC--------ceEEEECCHHHHHHHHHh-CCccccCCCC
Confidence 47888776554 45566667999998877732 247888899999999975 7777777764
No 193
>COG5193 LHP1 La protein, small RNA-binding pol III transcript stabilizing protein and related La-motif-containing proteins involved in translation [Posttranslational modification, protein turnover, chaperones / Translation, ribosomal structure and biogenesis]
Probab=30.45 E-value=23 Score=30.59 Aligned_cols=59 Identities=14% Similarity=0.088 Sum_probs=45.0
Q ss_pred CEEEEcCCCCCCCHH--------HHHHHhhh--CCCeEEEEEEeCC-CCCcceEEEEEEcCHHHHHHHHH
Q 029496 21 TKLYISNLEYGVSNE--------DIKELFSE--VGELKRCSVHFDR-SGRSKGTAEVVLTRRADAIAAVK 79 (192)
Q Consensus 21 ~~l~V~nL~~~~te~--------~L~~~f~~--~G~i~~v~i~~~~-tg~~~g~afV~f~~~~~a~~Ai~ 79 (192)
..+|+.+.....+.+ ++...|.. .+.+..+..-.+. ....+|..|++|.....+++.+.
T Consensus 175 r~~y~n~fG~e~~~~a~~~e~~~d~~~~~p~h~h~~~~~i~~rrd~~nkn~~gSv~~efk~~~~~q~~nn 244 (438)
T COG5193 175 RDVYQNGFGKEDVNNASRPEQQEDLEIQFPPHYHAPPSQIRNRRDWLNKNFRGSVFVEFKYFREAQRFNN 244 (438)
T ss_pred hhHHhhcCCcccccccccchhhhhHHhhCCCcccCChhhccchhhhhhccccCcccccccChHHHHHHhc
Confidence 456666666654444 88888987 5677777777776 77788999999999999999873
No 194
>KOG0226 consensus RNA-binding proteins [General function prediction only]
Probab=28.75 E-value=28 Score=28.29 Aligned_cols=76 Identities=17% Similarity=0.178 Sum_probs=53.5
Q ss_pred CCCCEEEEcCCCCCCCHHH-H--HHHhhhCCCeEEEEEEeCCCCCcceEEEEEEcCHHHHHHHHHHhCCCccCCceEEE
Q 029496 18 ESGTKLYISNLEYGVSNED-I--KELFSEVGELKRCSVHFDRSGRSKGTAEVVLTRRADAIAAVKRYNNVQLDGKPMKI 93 (192)
Q Consensus 18 ~~~~~l~V~nL~~~~te~~-L--~~~f~~~G~i~~v~i~~~~tg~~~g~afV~f~~~~~a~~Ai~~l~~~~l~g~~i~V 93 (192)
..-...|++++-..+..+- | ...|..|-.+....++.+.-+..++++|+.|......+++-..-+++.+.-..|++
T Consensus 94 P~vf~p~~~~~g~~v~pep~lp~~~~f~~~p~L~ktk~v~~~p~~~~~~~~~~~k~s~a~~k~~~~~~~Kki~~~~VR~ 172 (290)
T KOG0226|consen 94 PAVFRPFQSNAGATVNPEPPLPLPVVFSEYPSLVKTKLVRDRPQPIRPEAFESFKASDALLKAETEKEKKKIGKPPVRL 172 (290)
T ss_pred cccccccccccccccCCCCCCcchhhhccchhhhhhhhhhcCCCccCcccccCcchhhhhhhhccccccccccCcceee
Confidence 3445677777777766554 3 77888888888888888886777899999998766666665544555555555444
No 195
>COG5236 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=28.56 E-value=3.8e+02 Score=22.99 Aligned_cols=50 Identities=12% Similarity=0.125 Sum_probs=31.4
Q ss_pred HHHHHHhhhCCCeEEEEEEeCCCCCcceEEEEEEcCHHHHHHHHHHhCCCccCCceE
Q 029496 35 EDIKELFSEVGELKRCSVHFDRSGRSKGTAEVVLTRRADAIAAVKRYNNVQLDGKPM 91 (192)
Q Consensus 35 ~~L~~~f~~~G~i~~v~i~~~~tg~~~g~afV~f~~~~~a~~Ai~~l~~~~l~g~~i 91 (192)
++|...|..---+.-+.-..+ --||+|.+.-+.++-|-..++..+.+.++
T Consensus 265 ~~Le~HF~~~hy~ct~qtc~~-------~k~~vf~~~~el~~h~~~~h~~~~~~~~~ 314 (493)
T COG5236 265 EDLEAHFRNAHYCCTFQTCRV-------GKCYVFPYHTELLEHLTRFHKVNARLSEI 314 (493)
T ss_pred HHHHHHhhcCceEEEEEEEec-------CcEEEeccHHHHHHHHHHHhhcccccCcC
Confidence 456666654333333322221 23889999999988888888877776654
No 196
>KOG0116 consensus RasGAP SH3 binding protein rasputin, contains NTF2 and RRM domains [Signal transduction mechanisms]
Probab=26.86 E-value=1.2e+02 Score=26.45 Aligned_cols=12 Identities=17% Similarity=0.282 Sum_probs=6.4
Q ss_pred CHHHHHHHHHHh
Q 029496 70 RRADAIAAVKRY 81 (192)
Q Consensus 70 ~~~~a~~Ai~~l 81 (192)
+...++.+.+.+
T Consensus 301 ~~~~l~~~Fk~F 312 (419)
T KOG0116|consen 301 TPAELEEVFKQF 312 (419)
T ss_pred CHHHHHHHHhhc
Confidence 455566655543
No 197
>KOG2187 consensus tRNA uracil-5-methyltransferase and related tRNA-modifying enzymes [Translation, ribosomal structure and biogenesis]
Probab=25.61 E-value=92 Score=27.98 Aligned_cols=39 Identities=18% Similarity=0.199 Sum_probs=33.5
Q ss_pred ceEEEEEEcCHHHHHHHHHHhCCCccCCceEEEEEeecC
Q 029496 61 KGTAEVVLTRRADAIAAVKRYNNVQLDGKPMKIEIIGTN 99 (192)
Q Consensus 61 ~g~afV~f~~~~~a~~Ai~~l~~~~l~g~~i~V~~~~~~ 99 (192)
..+++++|+++..+.+|+..+++....+..+.+......
T Consensus 63 ~~~~~~~~et~~~~~ka~~~v~g~~~k~~~~~~~~~~~~ 101 (534)
T KOG2187|consen 63 PKYAYVTFETPSDAGKAINLVDGLLYKGFILRVQLGATE 101 (534)
T ss_pred CCceEEEEeccchhhhHHHHHhhhhhhcchhhhhhcccc
Confidence 469999999999999999999999988888877766543
No 198
>cd00027 BRCT Breast Cancer Suppressor Protein (BRCA1), carboxy-terminal domain. The BRCT domain is found within many DNA damage repair and cell cycle checkpoint proteins. The unique diversity of this domain superfamily allows BRCT modules to interact forming homo/hetero BRCT multimers, BRCT-non-BRCT interactions, and interactions within DNA strand breaks.
Probab=25.07 E-value=1.3e+02 Score=17.44 Aligned_cols=26 Identities=19% Similarity=0.305 Sum_probs=21.6
Q ss_pred CEEEEcCCCCCCCHHHHHHHhhhCCC
Q 029496 21 TKLYISNLEYGVSNEDIKELFSEVGE 46 (192)
Q Consensus 21 ~~l~V~nL~~~~te~~L~~~f~~~G~ 46 (192)
..+||.+.....+..+|++++..+|.
T Consensus 2 ~~~~i~g~~~~~~~~~l~~~i~~~Gg 27 (72)
T cd00027 2 LTFVITGDLPSEERDELKELIEKLGG 27 (72)
T ss_pred CEEEEEecCCCcCHHHHHHHHHHcCC
Confidence 56788877767888999999999986
No 199
>PF11430 EGL-1: Programmed cell death activator EGL-1; InterPro: IPR021543 Initiation of programmed cell death in C.elegans occurs by the binding of EGL-1 to CED-9 which disrupts a complex involving CED-4/CED-9 and allows CED-4 to activate CED-3, a caspase. It is the C-terminal domain of EGL-1 which is involved in the formation of the complex with CED-9. The formation of the complex induces structural rearrangements in CED-9 and EGL-1 adopts an extended alpha-helical conformation []. ; PDB: 1TY4_D.
Probab=24.07 E-value=26 Score=16.80 Aligned_cols=9 Identities=33% Similarity=0.745 Sum_probs=5.6
Q ss_pred HhHhHHHHH
Q 029496 171 EDLDADLEK 179 (192)
Q Consensus 171 ~~lD~el~~ 179 (192)
+|.|+||-.
T Consensus 12 DdFD~emMs 20 (21)
T PF11430_consen 12 DDFDAEMMS 20 (21)
T ss_dssp HHHHHHHHC
T ss_pred HHHHHHHhc
Confidence 467777643
No 200
>TIGR01873 cas_CT1978 CRISPR-associated endoribonuclease Cas2, E. coli subfamily. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This model represents a minor branch of the Cas2 family of CRISPR-associated endonuclease, whereas most Cas2 proteins are modeled instead by TIGR01573. This form of Cas2 is characteristic for the Ecoli subtype of CRISPR/Cas locus.
Probab=24.02 E-value=68 Score=21.49 Aligned_cols=51 Identities=14% Similarity=0.145 Sum_probs=29.5
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHhhh-CCCeEEEEEEeCCCCCcceEEEEEEcC
Q 029496 18 ESGTKLYISNLEYGVSNEDIKELFSE-VGELKRCSVHFDRSGRSKGTAEVVLTR 70 (192)
Q Consensus 18 ~~~~~l~V~nL~~~~te~~L~~~f~~-~G~i~~v~i~~~~tg~~~g~afV~f~~ 70 (192)
+...-|||++++..+.+.-.+.+-+. .++ -.+.+... +....||.|-++.+
T Consensus 23 Ev~~GVyVg~~s~rVRe~lW~~v~~~~~~~-G~avm~~~-~~~e~G~~~~t~G~ 74 (87)
T TIGR01873 23 EPRAGVYVGGVSASVRERIWDYLAQHCPPK-GSLVITWS-SNTCPGFEFFTLGE 74 (87)
T ss_pred ecCCCcEEcCCCHHHHHHHHHHHHHhCCCC-ccEEEEEe-CCCCCCcEEEecCC
Confidence 34567999999988876544444333 222 22333322 22345788888764
No 201
>PF11411 DNA_ligase_IV: DNA ligase IV; InterPro: IPR021536 DNA ligase IV along with Xrcc4 functions in DNA non-homologous end joining. This process is required to mend double-strand breaks. Upon ligase binding to an Xrcc4 dimer, the helical tails unwind leading to a flat interaction surface []. ; GO: 0003910 DNA ligase (ATP) activity; PDB: 3II6_Y 2E2W_A 1IK9_C.
Probab=23.77 E-value=62 Score=17.89 Aligned_cols=16 Identities=19% Similarity=0.536 Sum_probs=10.0
Q ss_pred CCCCHHHHHHHhhhCC
Q 029496 30 YGVSNEDIKELFSEVG 45 (192)
Q Consensus 30 ~~~te~~L~~~f~~~G 45 (192)
.++++++|++.|.+..
T Consensus 19 ~Dtd~~~Lk~vF~~i~ 34 (36)
T PF11411_consen 19 VDTDEDQLKEVFNRIK 34 (36)
T ss_dssp S---HHHHHHHHHCS-
T ss_pred ccCCHHHHHHHHHHhc
Confidence 4678899999998754
No 202
>COG2608 CopZ Copper chaperone [Inorganic ion transport and metabolism]
Probab=23.13 E-value=2e+02 Score=17.97 Aligned_cols=45 Identities=24% Similarity=0.423 Sum_probs=34.0
Q ss_pred CEEEEcCCCCCCCHHHHHHHhhhCCCeEEEEEEeCCCCCcceEEEEEEcC
Q 029496 21 TKLYISNLEYGVSNEDIKELFSEVGELKRCSVHFDRSGRSKGTAEVVLTR 70 (192)
Q Consensus 21 ~~l~V~nL~~~~te~~L~~~f~~~G~i~~v~i~~~~tg~~~g~afV~f~~ 70 (192)
.+++|.++.-..-...++..+.....+..+.+... .+.++|+|.+
T Consensus 4 ~~l~v~~MtC~~C~~~V~~al~~v~gv~~v~v~l~-----~~~~~V~~d~ 48 (71)
T COG2608 4 TTLKVEGMTCGHCVKTVEKALEEVDGVASVDVDLE-----KGTATVTFDS 48 (71)
T ss_pred EEEEECCcCcHHHHHHHHHHHhcCCCeeEEEEEcc-----cCeEEEEEcC
Confidence 46777777777667788888888777888877654 4458999987
No 203
>PF10775 ATP_sub_h: ATP synthase complex subunit h; InterPro: IPR019711 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. F-ATPases (also known as F1F0-ATPase, or H(+)-transporting two-sector ATPase) (3.6.3.14 from EC) are composed of two linked complexes: the F1 ATPase complex is the catalytic core and is composed of 5 subunits (alpha, beta, gamma, delta, epsilon), while the F0 ATPase complex is the membrane-embedded proton channel that is composed of at least 3 subunits (A-C), nine in mitochondria (A-G, F6, F8). Both the F1 and F0 complexes are rotary motors that are coupled back-to-back. In the F1 complex, the central gamma subunit forms the rotor inside the cylinder made of the alpha(3)beta(3) subunits, while in the F0 complex, the ring-shaped C subunits forms the rotor. The two rotors rotate in opposite directions, but the F0 rotor is usually stronger, using the force from the proton gradient to push the F1 rotor in reverse in order to drive ATP synthesis []. These ATPases can also work in reverse to hydrolyse ATP to create a proton gradient. This entry represents subunit H found in the F0 complex of F-ATPases from fungal mitochondria. Subunit H is homologous to the mammalian factor F6, and is essential for the correct assembly and/or functioning of F-ATPases, since yeast cells lacking it are not able to grow on non-fermentable carbon sources. Subunit H occupies a central place in the peripheral stalk between the F1 sector and the membrane [].
Probab=21.97 E-value=96 Score=19.71 Aligned_cols=21 Identities=29% Similarity=0.485 Sum_probs=15.3
Q ss_pred CCCCCCCHHhHhHHHHHHHHH
Q 029496 163 GAKPNLSVEDLDADLEKYHIE 183 (192)
Q Consensus 163 ~~~~~~~~~~lD~el~~~~~~ 183 (192)
+.+|+....||-+||.+|-..
T Consensus 44 P~~P~~P~~ela~eL~aY~~~ 64 (67)
T PF10775_consen 44 PAAPKAPEAELAAELKAYESQ 64 (67)
T ss_pred CCCCCCchhhHHHHHHHHHhc
Confidence 345566668898899999764
No 204
>PLN02805 D-lactate dehydrogenase [cytochrome]
Probab=21.50 E-value=3.4e+02 Score=24.65 Aligned_cols=50 Identities=12% Similarity=0.148 Sum_probs=36.2
Q ss_pred CHHHHHHHh----hhCCCeEEEEEEeCCCCCcceEEEEEEcCHHHHHHHHHHhC
Q 029496 33 SNEDIKELF----SEVGELKRCSVHFDRSGRSKGTAEVVLTRRADAIAAVKRYN 82 (192)
Q Consensus 33 te~~L~~~f----~~~G~i~~v~i~~~~tg~~~g~afV~f~~~~~a~~Ai~~l~ 82 (192)
+..+|..+| ..+|-|.++.+-..+--..+..+++.|.+.++|.+|+..+.
T Consensus 279 ~g~dL~~l~~GseGtLGIIT~~tlrl~p~P~~~~~~~~~f~~~~~a~~av~~i~ 332 (555)
T PLN02805 279 AGYDLTRLVIGSEGTLGVITEVTLRLQKIPQHSVVAMCNFPTIKDAADVAIATM 332 (555)
T ss_pred CCccHHHHhccCCCceEEEEEEEEEeecCCcceEEEEEEcCCHHHHHHHHHHHH
Confidence 335677776 25778888877665534446688999999999998887643
No 205
>PF05189 RTC_insert: RNA 3'-terminal phosphate cyclase (RTC), insert domain; InterPro: IPR013796 RNA cyclases are a family of RNA-modifying enzymes that are conserved in eukaryotes, bacteria and archaea. RNA 3'-terminal phosphate cyclase (6.5.1.4 from EC) [, ] catalyses the conversion of 3'-phosphate to a 2',3'-cyclic phosphodiester at the end of RNA. ATP + RNA 3'-terminal-phosphate = AMP + diphosphate + RNA terminal-2',3'-cyclic-phosphate These enzymes might be responsible for production of the cyclic phosphate RNA ends that are known to be required by many RNA ligases in both prokaryotes and eukaryotes. RNA cyclase is a protein of from 36 to 42 kDa. The best conserved region is a glycine-rich stretch of residues located in the central part of the sequence and which is reminiscent of various ATP, GTP or AMP glycine-rich loops. The crystal structure of RNA 3'-terminal phosphate cyclase shows that each molecule consists of two domains. The larger domain contains three repeats of a folding unit comprising two parallel alpha helices and a four-stranded beta sheet; this fold was previously identified in translation initiation factor 3 (IF3). The large domain is similar to one of the two domains of 5-enolpyruvylshikimate-3-phosphate synthase and UDP-N-acetylglucosamine enolpyruvyl transferase. The smaller domain uses a similar secondary structure element with different topology, observed in many other proteins such as thioredoxin []. Although the active site of this enzyme could not be unambiguously assigned, it can be mapped to a region surrounding His309, an adenylate acceptor, in which a number of amino acids are highly conserved in the enzyme from different sources []. This entry contains the insert-domain of approximately 100 amino acids.; PDB: 3TV1_B 3KGD_D 1QMI_D 1QMH_B 3TUX_A 3TUT_A 3TW3_A 3PQV_A.
Probab=21.30 E-value=1.8e+02 Score=19.57 Aligned_cols=48 Identities=10% Similarity=0.105 Sum_probs=27.7
Q ss_pred EEEEcCCCCCCCHHHH---HHHhhhCCCeEEEEE--EeCC-CCCcceEEEEEEc
Q 029496 22 KLYISNLEYGVSNEDI---KELFSEVGELKRCSV--HFDR-SGRSKGTAEVVLT 69 (192)
Q Consensus 22 ~l~V~nL~~~~te~~L---~~~f~~~G~i~~v~i--~~~~-tg~~~g~afV~f~ 69 (192)
..|+.+||.++.+..+ +..|..+..-.+|.+ .... .....|++.+.+.
T Consensus 12 ~a~~a~lp~~va~R~~~~a~~~L~~~~~~v~i~~d~~~~~~~~~~~G~gi~l~a 65 (103)
T PF05189_consen 12 IAFVAGLPSSVAERMANAARKRLNWYGPDVEIETDYRESDDSAFGPGSGISLVA 65 (103)
T ss_dssp EEEEESS-CHHHHHHHHHHHHHHCTTCSEEEEEEEEE-CCCCGCSSEEEEEEEE
T ss_pred EEEEcCCCHHHHHHHHHHHHHHhhhhCCCeEEEEecccCccCCCCCceEEEEEE
Confidence 4588899999888665 455555553334433 1122 5566777766553
No 206
>PF03439 Spt5-NGN: Early transcription elongation factor of RNA pol II, NGN section; InterPro: IPR005100 Spt5p and prokaryotic NusG are shown to contain a novel 'NGN' domain. The combined NGN and KOW motif regions of Spt5 form the binding domain with Spt4 []. Spt5 complexes with Spt4 as a 1:1 heterodimer snf this Spt5-Spt4 complex regulates early transcription elongation by RNA polymerase II and has an imputed role in pre-mRNA processing via its physical association with mRNA capping enzymes. The Schizosaccharomyces pombe core Spt5-Spt4 complex is a heterodimer bearing a trypsin-resistant Spt4-binding domain within the Spt5 subunit []. ; PDB: 3H7H_B 3QQC_D 3P8B_B 2EXU_A.
Probab=21.22 E-value=1.1e+02 Score=19.97 Aligned_cols=25 Identities=24% Similarity=0.302 Sum_probs=20.6
Q ss_pred cceEEEEEEcCHHHHHHHHHHhCCC
Q 029496 60 SKGTAEVVLTRRADAIAAVKRYNNV 84 (192)
Q Consensus 60 ~~g~afV~f~~~~~a~~Ai~~l~~~ 84 (192)
.+||-|||=.+..++..|++.+.+.
T Consensus 43 lkGyIyVEA~~~~~V~~ai~gi~~i 67 (84)
T PF03439_consen 43 LKGYIYVEAERESDVKEAIRGIRHI 67 (84)
T ss_dssp STSEEEEEESSHHHHHHHHTT-TTE
T ss_pred CceEEEEEeCCHHHHHHHHhcccce
Confidence 5899999999999999999766543
No 207
>TIGR00387 glcD glycolate oxidase, subunit GlcD. This protein, the glycolate oxidase GlcD subunit, is similar in sequence to that of several D-lactate dehydrogenases, including that of E. coli. The glycolate oxidase has been found to have some D-lactate dehydrogenase activity.
Probab=21.09 E-value=3.4e+02 Score=23.36 Aligned_cols=48 Identities=17% Similarity=0.156 Sum_probs=34.7
Q ss_pred HHHHHHhh----hCCCeEEEEEEeCCCCCcceEEEEEEcCHHHHHHHHHHhC
Q 029496 35 EDIKELFS----EVGELKRCSVHFDRSGRSKGTAEVVLTRRADAIAAVKRYN 82 (192)
Q Consensus 35 ~~L~~~f~----~~G~i~~v~i~~~~tg~~~g~afV~f~~~~~a~~Ai~~l~ 82 (192)
.+|..+|. .+|-|.++.+...+.-....+.++.|.+.+++.+++..+.
T Consensus 147 ~dl~~l~~Gs~GtlGiit~~~lkl~p~p~~~~~~~~~f~~~~~~~~~~~~~~ 198 (413)
T TIGR00387 147 YDLTGLFVGSEGTLGIVTEATLKLLPKPENIVVALAFFDSIEKAMQAVYDII 198 (413)
T ss_pred CChhhhcccCCccceEEEEEEEEeecCCCccEEEEEECCCHHHHHHHHHHHH
Confidence 45777763 3677888877766644445677889999999999986553
No 208
>PF12238 MSA-2c: Merozoite surface antigen 2c; InterPro: IPR021060 This family of proteins are restricted to the apicomplexan Babesia bovis. Proteins in this entry are typically between 263 and 318 amino acids in length and plasma membrane glycoproteins. These antigens present on the merozoite surface (MSA) and are involved in the parasite invasion of the bovine erythrocyte. MSA-2c has been suggested as a possible antigen for a vaccine candidate [].
Probab=21.04 E-value=67 Score=25.15 Aligned_cols=25 Identities=20% Similarity=0.210 Sum_probs=18.2
Q ss_pred CCCHHhHhHHHHHHHHHh-hhcCCCC
Q 029496 167 NLSVEDLDADLEKYHIEA-KQSDGMV 191 (192)
Q Consensus 167 ~~~~~~lD~el~~~~~~~-~~~~~~~ 191 (192)
....++.+.||.+|+++. -+++..|
T Consensus 76 ~~~~~~~~~~~~~YyKkhIy~~d~~v 101 (205)
T PF12238_consen 76 PHMLEEGREKMTKYYKKHIYKEDSEV 101 (205)
T ss_pred hhhhhccHHHHHHHHHHhccCccccc
Confidence 446678899999999987 4444443
No 209
>PHA01632 hypothetical protein
Probab=20.53 E-value=1.2e+02 Score=18.58 Aligned_cols=19 Identities=11% Similarity=0.373 Sum_probs=15.2
Q ss_pred EEcCCCCCCCHHHHHHHhh
Q 029496 24 YISNLEYGVSNEDIKELFS 42 (192)
Q Consensus 24 ~V~nL~~~~te~~L~~~f~ 42 (192)
.|-.+|...|+++|+..+.
T Consensus 20 lieqvp~kpteeelrkvlp 38 (64)
T PHA01632 20 LIEQVPQKPTEEELRKVLP 38 (64)
T ss_pred ehhhcCCCCCHHHHHHHHH
Confidence 3458999999999987764
Done!