Query 029496
Match_columns 192
No_of_seqs 234 out of 2153
Neff 8.6
Searched_HMMs 29240
Date Mon Mar 25 22:51:26 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029496.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/029496hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3q2s_C Cleavage and polyadenyl 99.9 8.6E-26 2.9E-30 178.2 4.7 81 19-99 67-150 (229)
2 4fxv_A ELAV-like protein 1; RN 99.9 6.3E-23 2.2E-27 141.6 11.7 81 18-98 17-98 (99)
3 1h2v_Z 20 kDa nuclear CAP bind 99.9 2E-22 6.8E-27 149.7 13.1 85 16-100 35-120 (156)
4 2dgo_A Cytotoxic granule-assoc 99.9 3.8E-21 1.3E-25 135.6 15.0 92 11-102 6-98 (115)
5 3s8s_A Histone-lysine N-methyl 99.9 1.2E-21 4E-26 137.8 12.0 81 18-98 4-85 (110)
6 2cq0_A Eukaryotic translation 99.9 1.6E-21 5.5E-26 135.0 12.1 90 13-102 8-98 (103)
7 2do0_A HnRNP M, heterogeneous 99.9 6.4E-21 2.2E-25 134.2 15.1 89 13-101 8-96 (114)
8 2cpz_A CUG triplet repeat RNA- 99.9 2.3E-21 7.8E-26 136.8 12.5 91 14-104 19-110 (115)
9 1x5s_A Cold-inducible RNA-bind 99.9 2.4E-21 8.2E-26 133.8 12.3 90 13-102 5-95 (102)
10 2dgs_A DAZ-associated protein 99.9 3.7E-21 1.3E-25 132.2 13.0 88 14-102 4-92 (99)
11 1x5u_A Splicing factor 3B subu 99.9 2.1E-21 7E-26 134.8 11.7 91 11-101 6-97 (105)
12 2dnh_A Bruno-like 5, RNA bindi 99.9 6.1E-21 2.1E-25 132.4 14.0 88 15-102 10-100 (105)
13 2dnz_A Probable RNA-binding pr 99.9 4.8E-21 1.6E-25 130.5 13.1 84 18-101 3-87 (95)
14 2dnm_A SRP46 splicing factor; 99.9 1.7E-21 5.7E-26 134.9 10.7 90 13-102 6-96 (103)
15 1whw_A Hypothetical protein ri 99.9 3.6E-21 1.2E-25 132.2 12.2 88 15-102 3-91 (99)
16 2d9p_A Polyadenylate-binding p 99.9 8.8E-21 3E-25 131.2 13.3 90 13-103 8-97 (103)
17 2cqb_A Peptidyl-prolyl CIS-tra 99.9 2.1E-21 7.3E-26 134.0 10.1 90 14-103 6-96 (102)
18 2e5h_A Zinc finger CCHC-type a 99.9 3.2E-21 1.1E-25 131.1 10.8 86 12-97 8-94 (94)
19 2cqc_A Arginine/serine-rich sp 99.9 3.9E-21 1.3E-25 130.9 11.0 87 12-98 7-94 (95)
20 2cq3_A RNA-binding protein 9; 99.9 1.6E-20 5.6E-25 129.8 14.1 93 11-104 6-98 (103)
21 3bs9_A Nucleolysin TIA-1 isofo 99.9 5E-21 1.7E-25 128.3 11.1 83 17-99 3-86 (87)
22 2cph_A RNA binding motif prote 99.9 9.8E-21 3.4E-25 131.7 12.8 91 12-102 7-100 (107)
23 3ex7_B RNA-binding protein 8A; 99.9 3.5E-21 1.2E-25 137.9 10.8 88 14-101 16-104 (126)
24 2dng_A Eukaryotic translation 99.9 1.1E-20 3.6E-25 130.9 12.9 89 11-101 6-95 (103)
25 2ywk_A Putative RNA-binding pr 99.9 3.7E-21 1.3E-25 131.1 10.3 87 12-98 8-94 (95)
26 1x4h_A RNA-binding protein 28; 99.9 8.7E-21 3E-25 132.8 12.4 89 14-102 9-104 (111)
27 2do4_A Squamous cell carcinoma 99.9 1.2E-20 4.2E-25 129.8 12.9 87 14-100 11-97 (100)
28 1u6f_A Tcubp1, RNA-binding pro 99.9 1.1E-20 3.7E-25 137.5 13.2 87 15-101 37-124 (139)
29 2fy1_A RNA-binding motif prote 99.9 1.2E-20 4.2E-25 133.7 12.9 85 16-100 3-87 (116)
30 2dhg_A TRNA selenocysteine ass 99.9 1.1E-20 3.8E-25 130.8 12.3 87 15-101 4-92 (104)
31 1p27_B RNA-binding protein 8A; 99.9 9.5E-21 3.2E-25 131.6 11.9 86 15-100 18-104 (106)
32 3md1_A Nuclear and cytoplasmic 99.8 1.1E-20 3.8E-25 125.5 11.5 80 20-99 1-81 (83)
33 3p5t_L Cleavage and polyadenyl 99.8 1.2E-21 4.2E-26 132.5 6.8 82 21-102 2-86 (90)
34 2cqd_A RNA-binding region cont 99.8 1.9E-20 6.4E-25 132.3 13.2 88 13-101 10-98 (116)
35 2la6_A RNA-binding protein FUS 99.8 1.3E-20 4.4E-25 129.5 12.0 85 13-97 6-99 (99)
36 2dgp_A Bruno-like 4, RNA bindi 99.8 9.6E-21 3.3E-25 131.6 11.4 88 14-101 7-98 (106)
37 2div_A TRNA selenocysteine ass 99.8 8.1E-21 2.8E-25 130.4 10.6 85 15-99 4-94 (99)
38 3ulh_A THO complex subunit 4; 99.8 1.4E-20 4.8E-25 131.0 11.9 85 13-97 22-106 (107)
39 2cqi_A Nucleolysin TIAR; RNA r 99.8 2.6E-20 9E-25 128.8 13.2 90 11-101 6-95 (103)
40 3mdf_A Peptidyl-prolyl CIS-tra 99.8 5.9E-21 2E-25 127.4 9.6 82 16-97 3-85 (85)
41 2lxi_A RNA-binding protein 10; 99.8 1.2E-21 4E-26 133.1 5.8 82 20-101 1-85 (91)
42 2cpe_A RNA-binding protein EWS 99.8 1.1E-20 3.7E-25 132.9 11.0 88 14-101 9-105 (113)
43 3pgw_S U1-70K; protein-RNA com 99.8 2.1E-20 7.3E-25 159.9 15.0 85 17-101 99-184 (437)
44 2lkz_A RNA-binding protein 5; 99.8 3.4E-21 1.2E-25 131.9 7.9 83 16-98 5-94 (95)
45 1x5t_A Splicing factor 3B subu 99.8 8.6E-21 2.9E-25 129.5 9.8 84 18-101 3-88 (96)
46 2dgv_A HnRNP M, heterogeneous 99.8 2.4E-20 8.2E-25 126.3 11.8 86 15-101 3-88 (92)
47 2jrs_A RNA-binding protein 39; 99.8 2.3E-20 7.8E-25 130.6 12.0 87 14-100 20-107 (108)
48 1wi8_A EIF-4B, eukaryotic tran 99.8 1.7E-20 5.8E-25 130.0 11.2 88 12-101 7-96 (104)
49 2dh8_A DAZ-associated protein 99.8 1.1E-20 3.7E-25 131.2 10.1 91 11-102 7-98 (105)
50 2kt5_A RNA and export factor-b 99.8 4.1E-20 1.4E-24 132.1 13.1 93 12-104 27-119 (124)
51 2khc_A Testis-specific RNP-typ 99.8 1.2E-20 4.2E-25 133.6 10.2 83 15-97 35-118 (118)
52 2kxn_B Transformer-2 protein h 99.8 1.3E-20 4.4E-25 136.0 10.3 88 13-100 39-127 (129)
53 2x1f_A MRNA 3'-END-processing 99.8 2E-20 6.7E-25 127.9 10.6 83 19-101 1-84 (96)
54 1x4c_A Splicing factor, argini 99.8 5E-20 1.7E-24 128.7 12.7 82 13-100 8-94 (108)
55 4f25_A Polyadenylate-binding p 99.8 1.8E-20 6.3E-25 132.4 10.6 82 19-101 4-85 (115)
56 2dgx_A KIAA0430 protein; RRM d 99.8 2.1E-20 7.1E-25 128.0 10.4 85 15-101 4-92 (96)
57 2cqp_A RNA-binding protein 12; 99.8 9.6E-21 3.3E-25 129.8 8.7 84 15-98 10-94 (98)
58 1x4a_A Splicing factor, argini 99.8 6.5E-20 2.2E-24 128.1 13.0 89 11-101 13-101 (109)
59 1oo0_B CG8781-PA, drosophila Y 99.8 2.3E-20 7.9E-25 130.6 10.4 87 14-100 20-107 (110)
60 2cqg_A TDP-43, TAR DNA-binding 99.8 8.4E-20 2.9E-24 126.2 13.0 89 12-102 7-96 (103)
61 2cpf_A RNA binding motif prote 99.8 3.3E-20 1.1E-24 127.1 10.8 85 18-102 3-91 (98)
62 2dgw_A Probable RNA-binding pr 99.8 5.1E-20 1.7E-24 124.5 11.6 83 15-99 5-87 (91)
63 4a8x_A RNA-binding protein wit 99.8 2.4E-20 8.4E-25 125.0 9.4 83 18-100 2-86 (88)
64 3n9u_C Cleavage and polyadenyl 99.8 3E-20 1E-24 138.3 10.9 80 19-98 54-136 (156)
65 2ek1_A RNA-binding protein 12; 99.8 8.8E-21 3E-25 129.2 6.9 84 15-98 10-94 (95)
66 1wez_A HnRNP H', FTP-3, hetero 99.8 5.9E-20 2E-24 127.3 11.1 83 14-98 9-91 (102)
67 3ns6_A Eukaryotic translation 99.8 7.9E-21 2.7E-25 131.1 6.6 81 18-98 4-92 (100)
68 3ucg_A Polyadenylate-binding p 99.8 6.1E-20 2.1E-24 123.4 10.5 79 20-99 6-85 (89)
69 3s7r_A Heterogeneous nuclear r 99.8 7.6E-20 2.6E-24 122.6 11.0 81 15-96 6-87 (87)
70 2dgu_A Heterogeneous nuclear r 99.8 1.3E-19 4.4E-24 125.4 12.1 82 14-102 5-86 (103)
71 2m2b_A RNA-binding protein 10; 99.8 2.2E-20 7.4E-25 134.9 8.3 89 12-101 15-110 (131)
72 1wg5_A Heterogeneous nuclear r 99.8 1.3E-19 4.5E-24 125.8 11.9 86 14-100 9-95 (104)
73 2fc9_A NCL protein; structure 99.8 9.1E-20 3.1E-24 125.6 11.0 87 12-101 7-93 (101)
74 2dis_A Unnamed protein product 99.8 9.5E-20 3.3E-24 127.1 11.2 88 17-104 5-97 (109)
75 2err_A Ataxin-2-binding protei 99.8 4.4E-20 1.5E-24 129.3 9.3 89 10-99 19-107 (109)
76 2ku7_A MLL1 PHD3-CYP33 RRM chi 99.8 7.8E-20 2.7E-24 132.8 10.6 85 12-96 55-140 (140)
77 1rk8_A CG8781-PA, CG8781-PA pr 99.8 1.1E-19 3.9E-24 136.1 11.7 87 15-101 67-154 (165)
78 1s79_A Lupus LA protein; RRM, 99.8 7.4E-20 2.5E-24 127.1 9.5 81 17-98 8-88 (103)
79 2fc8_A NCL protein; structure 99.8 2E-19 6.9E-24 124.0 11.5 87 11-100 6-93 (102)
80 2kn4_A Immunoglobulin G-bindin 99.8 1.8E-19 6.3E-24 133.7 11.9 87 16-102 66-153 (158)
81 1sjq_A Polypyrimidine tract-bi 99.8 7E-20 2.4E-24 127.3 8.8 82 16-102 12-95 (105)
82 2lea_A Serine/arginine-rich sp 99.8 3E-20 1E-24 135.1 7.2 90 13-102 40-130 (135)
83 1p1t_A Cleavage stimulation fa 99.8 2.9E-20 1E-24 128.6 6.8 84 18-101 6-90 (104)
84 2cpy_A RNA-binding protein 12; 99.8 4.7E-20 1.6E-24 130.1 7.9 86 14-100 9-95 (114)
85 2db1_A Heterogeneous nuclear r 99.8 9.9E-20 3.4E-24 129.3 9.4 83 15-98 12-97 (118)
86 1x4e_A RNA binding motif, sing 99.8 2.1E-20 7.1E-25 124.8 5.3 80 17-96 2-82 (85)
87 2dnq_A RNA-binding protein 4B; 99.8 3.7E-19 1.3E-23 120.1 11.6 80 15-101 3-82 (90)
88 1x5o_A RNA binding motif, sing 99.8 4.5E-19 1.5E-23 124.7 12.4 84 15-98 20-111 (114)
89 1wex_A Hypothetical protein (r 99.8 2.9E-19 9.9E-24 124.3 11.1 84 13-101 8-93 (104)
90 2j76_E EIF-4B, EIF4B, eukaryot 99.8 4.6E-20 1.6E-24 127.2 6.8 86 12-99 11-98 (100)
91 2cpi_A CCR4-NOT transcription 99.8 2.2E-19 7.4E-24 126.1 10.4 86 15-100 10-102 (111)
92 2dgt_A RNA-binding protein 30; 99.8 3.8E-19 1.3E-23 120.5 11.2 82 14-102 4-85 (92)
93 2rs2_A Musashi-1, RNA-binding 99.8 1.7E-19 5.9E-24 126.3 9.6 86 15-101 20-106 (109)
94 2cq4_A RNA binding motif prote 99.8 5.1E-20 1.8E-24 129.7 6.7 81 19-100 24-105 (114)
95 2jwn_A Embryonic polyadenylate 99.8 3.3E-19 1.1E-23 127.2 10.8 82 19-101 35-117 (124)
96 2mss_A Protein (musashi1); RNA 99.8 7.9E-20 2.7E-24 119.2 6.9 74 22-96 1-75 (75)
97 1x4d_A Matrin 3; structural ge 99.8 2.1E-19 7.1E-24 124.5 9.2 81 16-101 11-94 (102)
98 2hgl_A HNRPF protein, heteroge 99.8 1.2E-19 4.1E-24 132.1 8.4 83 15-98 39-124 (136)
99 1x4b_A Heterogeneous nuclear r 99.8 1E-19 3.4E-24 128.5 7.7 83 18-101 25-108 (116)
100 3r27_A HnRNP L, heterogeneous 99.8 3E-19 1E-23 123.0 9.7 79 16-99 17-97 (100)
101 2cq1_A PTB-like protein L; RRM 99.8 8.7E-19 3E-23 121.2 12.0 83 15-102 10-94 (101)
102 1uaw_A Mouse-musashi-1; RNP-ty 99.8 8.1E-20 2.8E-24 119.6 6.4 75 21-96 1-76 (77)
103 3beg_B Splicing factor, argini 99.8 2.5E-19 8.4E-24 126.7 9.3 76 16-97 12-92 (115)
104 2cpj_A Non-POU domain-containi 99.8 6.1E-19 2.1E-23 121.1 10.9 83 14-101 9-91 (99)
105 2ki2_A SS-DNA binding protein 99.8 4.6E-20 1.6E-24 124.4 5.1 82 21-103 2-84 (90)
106 1wel_A RNA-binding protein 12; 99.8 1.1E-19 3.8E-24 130.0 7.3 84 15-99 20-104 (124)
107 2cpx_A Hypothetical protein FL 99.8 1.2E-19 4.1E-24 127.8 7.3 89 15-103 20-109 (115)
108 2hgm_A HNRPF protein, heteroge 99.8 1.6E-19 5.5E-24 129.7 7.9 83 14-98 36-120 (126)
109 2dnn_A RNA-binding protein 12; 99.8 1.8E-19 6E-24 126.4 7.8 81 16-98 12-92 (109)
110 4f02_A Polyadenylate-binding p 99.8 6E-19 2.1E-23 137.1 11.6 85 14-98 9-94 (213)
111 2dnp_A RNA-binding protein 14; 99.8 7.4E-19 2.5E-23 118.6 10.6 80 15-101 4-83 (90)
112 2wbr_A GW182, gawky, LD47780P; 99.8 2.5E-19 8.6E-24 119.9 8.0 74 19-97 6-79 (89)
113 1why_A Hypothetical protein ri 99.8 9.9E-19 3.4E-23 119.6 11.3 81 15-100 12-94 (97)
114 2f3j_A RNA and export factor b 99.8 3.6E-19 1.2E-23 135.1 9.9 87 15-101 83-169 (177)
115 2a3j_A U1 small nuclear ribonu 99.8 7.4E-19 2.5E-23 126.4 10.7 84 15-100 24-111 (127)
116 2ad9_A Polypyrimidine tract-bi 99.8 6.6E-19 2.2E-23 125.1 10.3 83 16-103 27-111 (119)
117 2e5j_A Methenyltetrahydrofolat 99.8 1E-18 3.5E-23 119.6 10.8 82 15-100 14-95 (97)
118 2ytc_A PRE-mRNA-splicing facto 99.8 6.5E-19 2.2E-23 117.4 9.6 80 13-97 5-85 (85)
119 2nlw_A Eukaryotic translation 99.8 4.5E-19 1.5E-23 123.3 9.0 83 16-99 11-100 (105)
120 2hgn_A Heterogeneous nuclear r 99.8 6.3E-20 2.2E-24 134.0 4.6 82 15-98 41-122 (139)
121 2cpd_A Apobec-1 stimulating pr 99.8 2.6E-18 9E-23 117.9 12.2 80 15-101 10-91 (99)
122 1fj7_A Nucleolin RBD1, protein 99.8 6.5E-20 2.2E-24 126.4 4.0 84 15-100 12-96 (101)
123 2hvz_A Splicing factor, argini 99.8 7.8E-19 2.7E-23 120.9 9.4 77 21-101 1-77 (101)
124 2lcw_A RNA-binding protein FUS 99.7 1.1E-20 3.8E-25 133.5 0.0 83 17-99 4-95 (116)
125 2jvr_A Nucleolar protein 3; RN 99.8 3.4E-19 1.2E-23 125.3 7.5 80 16-98 24-104 (111)
126 2jvo_A Nucleolar protein 3; nu 99.8 9E-19 3.1E-23 122.5 9.4 82 12-100 23-104 (108)
127 2cqh_A IGF-II mRNA-binding pro 99.8 8.5E-19 2.9E-23 118.9 9.1 80 16-101 4-85 (93)
128 2lmi_A GRSF-1, G-rich sequence 99.8 1.9E-19 6.5E-24 125.6 6.0 83 15-98 6-91 (107)
129 1x4g_A Nucleolysin TIAR; struc 99.8 1.6E-18 5.5E-23 121.1 10.7 82 16-102 21-102 (109)
130 2xnq_A Nuclear polyadenylated 99.8 1.8E-18 6.2E-23 118.6 10.6 81 12-99 14-95 (97)
131 1x4f_A Matrin 3; structural ge 99.8 1.9E-18 6.5E-23 121.5 10.7 83 17-104 22-107 (112)
132 2kvi_A Nuclear polyadenylated 99.8 1.3E-18 4.6E-23 118.8 9.6 80 15-101 5-85 (96)
133 1nu4_A U1A RNA binding domain; 99.8 3.9E-19 1.3E-23 121.4 6.7 83 16-100 4-90 (97)
134 2krb_A Eukaryotic translation 99.8 5.1E-19 1.8E-23 117.2 6.8 73 20-93 1-80 (81)
135 3lqv_A PRE-mRNA branch site pr 99.8 2.8E-18 9.6E-23 120.8 10.6 81 16-98 4-84 (115)
136 2dha_A FLJ20171 protein; RRM d 99.8 6.5E-19 2.2E-23 126.0 7.0 81 17-98 20-104 (123)
137 2la4_A Nuclear and cytoplasmic 99.8 1.4E-18 4.7E-23 119.6 8.3 78 16-98 23-100 (101)
138 2e44_A Insulin-like growth fac 99.8 3.3E-18 1.1E-22 116.6 10.0 81 15-99 10-92 (96)
139 1wf1_A RNA-binding protein RAL 99.8 3.7E-18 1.3E-22 119.4 10.5 79 16-101 23-102 (110)
140 1whx_A Hypothetical protein ri 99.8 2E-18 6.7E-23 121.3 9.1 80 18-102 8-87 (111)
141 1iqt_A AUF1, heterogeneous nuc 99.8 3.6E-19 1.2E-23 116.0 4.9 74 22-96 1-75 (75)
142 2xs2_A Deleted in azoospermia- 99.8 8.7E-19 3E-23 120.9 7.0 85 16-102 5-89 (102)
143 2e5g_A U6 snRNA-specific termi 99.8 6E-18 2.1E-22 115.1 10.6 80 16-101 4-84 (94)
144 2qfj_A FBP-interacting repress 99.8 1E-17 3.4E-22 129.4 12.7 87 18-104 123-210 (216)
145 1fjc_A Nucleolin RBD2, protein 99.8 1.2E-18 4.2E-23 118.8 6.7 82 15-100 11-92 (96)
146 2i2y_A Fusion protein consists 99.8 6.4E-18 2.2E-22 124.5 10.8 82 14-99 67-148 (150)
147 1x5p_A Negative elongation fac 99.8 1.7E-17 5.9E-22 113.4 12.2 81 15-102 10-90 (97)
148 3md3_A Nuclear and cytoplasmic 99.7 1.5E-17 5E-22 123.0 12.1 83 15-97 82-165 (166)
149 1fxl_A Paraneoplastic encephal 99.7 1.4E-17 4.9E-22 123.2 11.9 81 19-99 1-82 (167)
150 3egn_A RNA-binding protein 40; 99.7 3.4E-18 1.2E-22 125.0 7.8 87 15-101 40-132 (143)
151 2j8a_A Histone-lysine N-methyl 99.7 6E-18 2E-22 120.7 7.8 78 21-98 3-95 (136)
152 1b7f_A Protein (SXL-lethal pro 99.7 1.4E-17 4.6E-22 123.7 10.0 83 19-101 2-85 (168)
153 2yh0_A Splicing factor U2AF 65 99.7 3.5E-17 1.2E-21 124.7 12.5 85 17-101 111-196 (198)
154 1wg1_A KIAA1579 protein, homol 99.7 8.7E-18 3E-22 113.0 7.9 77 18-100 3-79 (88)
155 1sjr_A Polypyrimidine tract-bi 99.7 2.5E-17 8.4E-22 122.9 10.9 82 16-100 42-125 (164)
156 2diu_A KIAA0430 protein; struc 99.7 3.9E-17 1.3E-21 110.4 10.6 79 17-104 5-89 (96)
157 1l3k_A Heterogeneous nuclear r 99.7 2.1E-17 7.2E-22 125.7 10.6 85 14-99 7-92 (196)
158 2cq2_A Hypothetical protein LO 99.7 1.3E-17 4.4E-22 117.5 8.5 81 16-101 21-108 (114)
159 2g4b_A Splicing factor U2AF 65 99.7 3.9E-17 1.3E-21 121.7 11.1 80 17-96 91-171 (172)
160 1l3k_A Heterogeneous nuclear r 99.7 5.2E-17 1.8E-21 123.5 11.2 86 16-102 100-186 (196)
161 3md3_A Nuclear and cytoplasmic 99.7 5.5E-17 1.9E-21 119.9 10.9 81 21-101 1-81 (166)
162 3zzy_A Polypyrimidine tract-bi 99.7 5.2E-17 1.8E-21 116.8 10.2 83 15-101 23-108 (130)
163 1b7f_A Protein (SXL-lethal pro 99.7 1.4E-16 4.8E-21 118.2 12.3 81 16-96 85-168 (168)
164 2dnl_A Cytoplasmic polyadenyla 99.7 6.3E-17 2.1E-21 113.9 9.6 78 16-96 4-85 (114)
165 2e5i_A Heterogeneous nuclear r 99.7 1.3E-16 4.5E-21 114.1 11.3 76 21-101 26-104 (124)
166 4f02_A Polyadenylate-binding p 99.7 6.3E-17 2.2E-21 125.6 10.3 80 19-99 102-181 (213)
167 3nmr_A Cugbp ELAV-like family 99.7 1.3E-16 4.4E-21 119.0 11.5 82 16-97 91-175 (175)
168 2hzc_A Splicing factor U2AF 65 99.7 4.2E-17 1.4E-21 108.9 7.9 73 17-95 3-86 (87)
169 2cjk_A Nuclear polyadenylated 99.7 3.7E-17 1.3E-21 121.4 7.8 80 19-99 86-166 (167)
170 3d2w_A TAR DNA-binding protein 99.7 7.8E-17 2.7E-21 108.7 8.5 77 16-100 7-85 (89)
171 2bz2_A Negative elongation fac 99.7 1.1E-16 3.8E-21 114.1 9.6 80 15-101 34-113 (121)
172 2qfj_A FBP-interacting repress 99.7 1E-16 3.5E-21 123.7 10.1 81 18-98 26-107 (216)
173 1fxl_A Paraneoplastic encephal 99.7 2.5E-16 8.7E-21 116.4 11.5 80 17-96 85-167 (167)
174 3tyt_A Heterogeneous nuclear r 99.7 1E-16 3.5E-21 124.2 9.7 78 19-100 3-81 (205)
175 1wf0_A TDP-43, TAR DNA-binding 99.7 3.1E-17 1E-21 110.1 5.6 78 18-101 3-80 (88)
176 3nmr_A Cugbp ELAV-like family 99.7 3.3E-16 1.1E-20 116.8 10.7 81 19-99 2-88 (175)
177 3pgw_A U1-A; protein-RNA compl 99.7 3.9E-16 1.3E-20 125.5 11.7 84 15-100 4-91 (282)
178 2voo_A Lupus LA protein; RNA-b 99.7 3.3E-16 1.1E-20 120.2 10.3 79 20-99 109-187 (193)
179 2pe8_A Splicing factor 45; RRM 99.7 8.7E-16 3E-20 106.8 11.0 81 18-98 6-93 (105)
180 2adc_A Polypyrimidine tract-bi 99.6 5.9E-16 2E-20 121.4 10.3 83 15-101 29-112 (229)
181 2cjk_A Nuclear polyadenylated 99.6 2.5E-16 8.7E-21 116.8 7.3 78 19-98 2-80 (167)
182 1fje_B Nucleolin RBD12, protei 99.6 5E-16 1.7E-20 116.2 8.5 80 16-99 95-174 (175)
183 3smz_A Protein raver-1, ribonu 99.6 1.4E-15 4.7E-20 122.4 11.6 86 16-101 180-266 (284)
184 2dit_A HIV TAT specific factor 99.6 3.9E-15 1.3E-19 104.4 12.3 87 12-101 7-104 (112)
185 3u1l_A PRE-mRNA-splicing facto 99.6 7.2E-16 2.5E-20 121.8 8.5 81 16-101 130-231 (240)
186 3pgw_A U1-A; protein-RNA compl 99.6 3.2E-15 1.1E-19 120.2 12.3 77 17-97 204-281 (282)
187 3smz_A Protein raver-1, ribonu 99.6 3.6E-15 1.2E-19 120.0 11.9 83 18-100 93-176 (284)
188 2ghp_A U4/U6 snRNA-associated 99.6 1.5E-15 5.2E-20 122.7 9.2 83 16-99 206-291 (292)
189 3tyt_A Heterogeneous nuclear r 99.6 2.9E-15 1E-19 115.9 8.6 78 18-96 121-204 (205)
190 1qm9_A Polypyrimidine tract-bi 99.6 2.3E-15 7.7E-20 115.0 7.9 79 19-101 2-81 (198)
191 1fje_B Nucleolin RBD12, protei 99.6 4.6E-16 1.6E-20 116.4 2.8 85 15-100 8-92 (175)
192 3sde_A Paraspeckle component 1 99.6 8.4E-15 2.9E-19 117.0 9.7 79 15-98 17-95 (261)
193 1qm9_A Polypyrimidine tract-bi 99.6 1.2E-14 4.1E-19 110.9 10.1 78 18-99 118-197 (198)
194 3sde_A Paraspeckle component 1 99.6 9.1E-15 3.1E-19 116.8 9.5 83 18-100 94-180 (261)
195 1jmt_A Splicing factor U2AF 35 99.6 1.6E-15 5.6E-20 105.2 4.3 72 25-96 20-103 (104)
196 2adc_A Polypyrimidine tract-bi 99.6 1.5E-14 5.2E-19 113.3 10.3 78 18-99 149-228 (229)
197 2ghp_A U4/U6 snRNA-associated 99.6 8.7E-15 3E-19 118.2 8.8 82 19-100 116-198 (292)
198 2g4b_A Splicing factor U2AF 65 99.5 2.2E-14 7.4E-19 106.7 8.8 76 18-99 2-88 (172)
199 3v4m_A Splicing factor U2AF 65 99.5 2.8E-14 9.7E-19 99.1 8.3 80 19-98 4-96 (105)
200 2yh0_A Splicing factor U2AF 65 99.5 3.5E-14 1.2E-18 107.9 8.8 76 19-100 3-89 (198)
201 2d9o_A DNAJ (HSP40) homolog, s 99.5 4.2E-13 1.5E-17 92.3 12.3 77 19-101 9-92 (100)
202 3ue2_A Poly(U)-binding-splicin 99.5 1.1E-13 3.6E-18 98.1 9.4 80 19-98 19-108 (118)
203 3tht_A Alkylated DNA repair pr 99.5 1.5E-13 5.1E-18 113.9 8.3 76 16-96 14-96 (345)
204 3s6e_A RNA-binding protein 39; 99.4 3.6E-12 1.2E-16 89.6 9.2 78 18-98 5-92 (114)
205 1owx_A Lupus LA protein, SS-B, 99.4 4.9E-12 1.7E-16 89.6 9.6 78 15-97 13-94 (121)
206 2dnr_A Synaptojanin-1; RRM dom 99.3 1.4E-11 4.9E-16 82.3 8.1 76 18-101 5-88 (91)
207 1ufw_A Synaptojanin 2; RNP dom 99.1 1.2E-10 4.1E-15 78.3 5.9 75 16-98 11-94 (95)
208 3dxb_A Thioredoxin N-terminall 99.0 1.6E-09 5.6E-14 84.1 9.0 67 32-98 141-212 (222)
209 2l9w_A U4/U6 snRNA-associated- 98.6 2.5E-07 8.6E-12 63.5 7.8 73 18-95 19-96 (117)
210 2dhx_A Poly (ADP-ribose) polym 98.1 7.2E-05 2.4E-09 50.8 10.8 74 16-97 4-82 (104)
211 1uw4_A UPF3X; nonsense mediate 97.8 7.9E-05 2.7E-09 49.7 7.5 77 21-97 2-86 (91)
212 1wey_A Calcipressin 1; structu 97.8 4.9E-05 1.7E-09 51.7 6.5 75 19-98 4-83 (104)
213 1whv_A Poly(A)-specific ribonu 97.8 0.00012 4E-09 49.2 7.9 59 15-81 11-69 (100)
214 3ctr_A Poly(A)-specific ribonu 97.5 0.00015 5.2E-09 48.8 5.2 56 19-82 5-60 (101)
215 2l08_A Regulator of nonsense t 97.2 0.00049 1.7E-08 46.2 4.6 79 19-97 8-94 (97)
216 1wwh_A Nucleoporin 35, nucleop 96.9 0.0033 1.1E-07 43.7 6.6 73 17-96 21-94 (119)
217 3pq1_A Poly(A) RNA polymerase; 96.4 0.0018 6E-08 55.4 3.4 54 21-79 54-107 (464)
218 2kn4_A Immunoglobulin G-bindin 96.0 0.0067 2.3E-07 43.7 4.1 35 50-85 3-37 (158)
219 3p3d_A Nucleoporin 53; structu 95.6 0.016 5.4E-07 41.0 4.7 77 19-97 6-97 (132)
220 2i2y_A Fusion protein consists 94.9 0.0081 2.8E-07 43.0 1.2 40 58-98 10-50 (150)
221 3d45_A Poly(A)-specific ribonu 92.8 0.39 1.3E-05 41.5 8.2 56 19-82 439-494 (507)
222 2g0c_A ATP-dependent RNA helic 91.1 0.61 2.1E-05 29.1 5.7 68 22-97 2-75 (76)
223 4eyt_A Telomerase associated p 71.0 19 0.00064 23.5 8.1 60 18-84 10-69 (129)
224 3fry_A Probable copper-exporti 49.1 38 0.0013 19.8 6.0 55 20-80 6-60 (73)
225 3twe_A Alpha4H; unknown functi 48.6 15 0.00053 17.5 2.2 16 169-184 2-17 (27)
226 4e8u_A Putative uncharacterize 40.8 1E+02 0.0035 22.4 7.4 56 22-79 14-81 (172)
227 1sf9_A YFHH hypothetical prote 39.8 21 0.00071 24.6 2.7 25 167-191 31-57 (128)
228 2l6f_A Focal adhesion kinase 1 45.7 6.2 0.00021 29.8 0.0 7 176-182 205-211 (215)
229 3uly_B Charged multivesicular 34.6 24 0.00081 21.7 2.1 18 167-184 7-24 (69)
230 4bby_A Alkyldihydroxyacetoneph 34.1 31 0.001 30.5 3.6 55 28-82 351-409 (658)
231 2cu1_A Mitogen-activated prote 33.6 1E+02 0.0035 20.3 5.9 65 27-99 23-88 (103)
232 3fut_A Dimethyladenosine trans 30.9 39 0.0013 26.3 3.3 32 21-53 111-142 (271)
233 3ts2_A Protein LIN-28 homolog 30.1 5.5 0.00019 28.4 -1.6 28 35-69 2-29 (148)
234 3dd7_B PHD, prevent HOST death 29.4 28 0.00097 16.5 1.4 11 173-183 2-12 (23)
235 3uzu_A Ribosomal RNA small sub 27.2 18 0.00061 28.3 0.8 34 21-54 115-148 (279)
236 2pk2_A Cyclin-T1, protein TAT; 27.2 13 0.00045 30.3 0.0 6 33-38 230-235 (358)
237 3lqv_P Splicing factor 3B subu 24.2 43 0.0015 18.0 1.7 11 167-177 22-32 (39)
238 3swz_A Steroid 17-alpha-hydrox 23.8 1.2E+02 0.004 24.8 5.3 49 23-79 17-69 (494)
239 4a4j_A Pacszia, cation-transpo 23.4 1.1E+02 0.0037 17.2 4.4 55 21-80 4-61 (69)
240 1wvf_A 4-cresol dehydrogenase 23.2 51 0.0018 28.0 3.0 44 36-79 217-262 (520)
241 2lfv_A Protein DAMX; cell divi 28.2 18 0.00062 24.1 0.0 59 20-83 25-86 (106)
242 3pgw_S U1-70K; protein-RNA com 22.0 7.7 0.00026 32.6 -2.4 14 37-50 9-22 (437)
243 1qyr_A KSGA, high level kasuga 22.0 73 0.0025 24.3 3.4 32 21-52 91-122 (252)
244 3ced_A Methionine import ATP-b 21.7 1.3E+02 0.0045 19.2 4.2 62 22-83 22-87 (98)
245 1onv_B Serine phosphatase FCP1 21.5 34 0.0012 21.2 1.1 11 171-181 73-83 (83)
246 3dxs_X Copper-transporting ATP 21.2 1.3E+02 0.0043 17.2 6.1 55 21-80 4-62 (74)
247 2i9x_A Putative septation prot 21.1 1.5E+02 0.0052 18.8 4.2 25 46-70 5-30 (87)
248 3tqs_A Ribosomal RNA small sub 20.1 26 0.00087 27.0 0.4 31 23-53 99-129 (255)
No 1
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=99.91 E-value=8.6e-26 Score=178.24 Aligned_cols=81 Identities=23% Similarity=0.352 Sum_probs=76.2
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHhhhCC--CeEEEEEEeCC-CCCcceEEEEEEcCHHHHHHHHHHhCCCccCCceEEEEE
Q 029496 19 SGTKLYISNLEYGVSNEDIKELFSEVG--ELKRCSVHFDR-SGRSKGTAEVVLTRRADAIAAVKRYNNVQLDGKPMKIEI 95 (192)
Q Consensus 19 ~~~~l~V~nL~~~~te~~L~~~f~~~G--~i~~v~i~~~~-tg~~~g~afV~f~~~~~a~~Ai~~l~~~~l~g~~i~V~~ 95 (192)
..++|||+||++++|+++|+++|.+|| .|.+|.|+.++ +++++|||||+|.+.++|++||+.|+++.|+|+.|+|++
T Consensus 67 ~~~~lfVgnL~~~~te~~L~~~F~~~G~~~v~~v~i~~d~~tg~skGfaFV~f~~~~~a~~Ai~~lng~~~~Gr~l~V~~ 146 (229)
T 3q2s_C 67 KRIALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTP 146 (229)
T ss_dssp --CEEEEESCCTTCCHHHHHHHHHTTTCCCEEEEEEEECTTTCCEEEEEEEEESCTTHHHHHHTTSTTSCBTTBCCEEEE
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHHHCCcceEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCeECCEEeEEEE
Confidence 567899999999999999999999999 99999999998 999999999999999999999999999999999999999
Q ss_pred eecC
Q 029496 96 IGTN 99 (192)
Q Consensus 96 ~~~~ 99 (192)
+.+.
T Consensus 147 a~~~ 150 (229)
T 3q2s_C 147 VNKQ 150 (229)
T ss_dssp CCHH
T ss_pred CCCC
Confidence 8653
No 2
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=99.89 E-value=6.3e-23 Score=141.60 Aligned_cols=81 Identities=26% Similarity=0.435 Sum_probs=77.8
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHhhhCCCeEEEEEEeCC-CCCcceEEEEEEcCHHHHHHHHHHhCCCccCCceEEEEEe
Q 029496 18 ESGTKLYISNLEYGVSNEDIKELFSEVGELKRCSVHFDR-SGRSKGTAEVVLTRRADAIAAVKRYNNVQLDGKPMKIEII 96 (192)
Q Consensus 18 ~~~~~l~V~nL~~~~te~~L~~~f~~~G~i~~v~i~~~~-tg~~~g~afV~f~~~~~a~~Ai~~l~~~~l~g~~i~V~~~ 96 (192)
..+++|||+|||+++|+++|+++|++||.|..|.|+.++ ++.++|||||+|.+.++|++|++.|++..|+|+.|+|+++
T Consensus 17 ~~gt~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~gr~l~V~~A 96 (99)
T 4fxv_A 17 FQGTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQSKTIKVSYA 96 (99)
T ss_dssp CCCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEeEeeecCCCCcccccEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEe
Confidence 456899999999999999999999999999999999998 8999999999999999999999999999999999999999
Q ss_pred ec
Q 029496 97 GT 98 (192)
Q Consensus 97 ~~ 98 (192)
+|
T Consensus 97 kP 98 (99)
T 4fxv_A 97 RP 98 (99)
T ss_dssp CB
T ss_pred eC
Confidence 75
No 3
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=99.89 E-value=2e-22 Score=149.69 Aligned_cols=85 Identities=27% Similarity=0.395 Sum_probs=80.0
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHhhhCCCeEEEEEEeCC-CCCcceEEEEEEcCHHHHHHHHHHhCCCccCCceEEEE
Q 029496 16 SIESGTKLYISNLEYGVSNEDIKELFSEVGELKRCSVHFDR-SGRSKGTAEVVLTRRADAIAAVKRYNNVQLDGKPMKIE 94 (192)
Q Consensus 16 ~~~~~~~l~V~nL~~~~te~~L~~~f~~~G~i~~v~i~~~~-tg~~~g~afV~f~~~~~a~~Ai~~l~~~~l~g~~i~V~ 94 (192)
...+.++|||+|||+++|+++|+++|++||.|..|.|+.++ ++.+++||||+|.+.++|++||+.|++..|+++.|+|+
T Consensus 35 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~ 114 (156)
T 1h2v_Z 35 LLKKSCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYINGTRLDDRIIRTD 114 (156)
T ss_dssp TTTTCCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTSEETTEECEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEE
Confidence 44577999999999999999999999999999999999998 89999999999999999999999999999999999999
Q ss_pred EeecCC
Q 029496 95 IIGTNI 100 (192)
Q Consensus 95 ~~~~~~ 100 (192)
++.+..
T Consensus 115 ~a~~~~ 120 (156)
T 1h2v_Z 115 WDAGFK 120 (156)
T ss_dssp EESCCC
T ss_pred ECCCCC
Confidence 998643
No 4
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=99.87 E-value=3.8e-21 Score=135.64 Aligned_cols=92 Identities=21% Similarity=0.335 Sum_probs=84.6
Q ss_pred cccCCCCCCCCEEEEcCCCCCCCHHHHHHHhhhCCCeEEEEEEeCC-CCCcceEEEEEEcCHHHHHHHHHHhCCCccCCc
Q 029496 11 AARSSSIESGTKLYISNLEYGVSNEDIKELFSEVGELKRCSVHFDR-SGRSKGTAEVVLTRRADAIAAVKRYNNVQLDGK 89 (192)
Q Consensus 11 ~~~~~~~~~~~~l~V~nL~~~~te~~L~~~f~~~G~i~~v~i~~~~-tg~~~g~afV~f~~~~~a~~Ai~~l~~~~l~g~ 89 (192)
........+.++|||+|||+.+++++|+++|.+||.|..|.|+.++ ++.+++||||+|.+.++|++||+.|++..|+|+
T Consensus 6 ~~~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~ 85 (115)
T 2dgo_A 6 SGQKKDTSNHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGR 85 (115)
T ss_dssp CSSCCCSTTCEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTCEETTE
T ss_pred CcCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCE
Confidence 3444566788999999999999999999999999999999999998 999999999999999999999999999999999
Q ss_pred eEEEEEeecCCCC
Q 029496 90 PMKIEIIGTNIGP 102 (192)
Q Consensus 90 ~i~V~~~~~~~~~ 102 (192)
.|+|+++.+....
T Consensus 86 ~l~V~~a~~~~~~ 98 (115)
T 2dgo_A 86 QIRTNWATRKPPA 98 (115)
T ss_dssp ECEEEESSCCCCC
T ss_pred EEEEEEccCCCCC
Confidence 9999999876554
No 5
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=99.87 E-value=1.2e-21 Score=137.78 Aligned_cols=81 Identities=16% Similarity=0.217 Sum_probs=77.6
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHhhhCCCeEEEEEEeCC-CCCcceEEEEEEcCHHHHHHHHHHhCCCccCCceEEEEEe
Q 029496 18 ESGTKLYISNLEYGVSNEDIKELFSEVGELKRCSVHFDR-SGRSKGTAEVVLTRRADAIAAVKRYNNVQLDGKPMKIEII 96 (192)
Q Consensus 18 ~~~~~l~V~nL~~~~te~~L~~~f~~~G~i~~v~i~~~~-tg~~~g~afV~f~~~~~a~~Ai~~l~~~~l~g~~i~V~~~ 96 (192)
.+.++|||+|||+++++++|+++|++||.|.+|.|+.|+ +++++|||||+|.+.++|++||+.||+..|+|+.|+|+++
T Consensus 4 ~p~~~lfV~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~A~~Ai~~lng~~~~gr~i~V~~a 83 (110)
T 3s8s_A 4 IPLKEVTFARLNDNVRETFLKDMCRKYGEVEEVEILLHPRTRKHLGLARVLFTSTRGAKETVKNLHLTSVMGNIIHAQLD 83 (110)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCcEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCceeeEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEC
Confidence 456899999999999999999999999999999999999 8999999999999999999999999999999999999998
Q ss_pred ec
Q 029496 97 GT 98 (192)
Q Consensus 97 ~~ 98 (192)
..
T Consensus 84 ~~ 85 (110)
T 3s8s_A 84 IK 85 (110)
T ss_dssp ST
T ss_pred CC
Confidence 64
No 6
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.87 E-value=1.6e-21 Score=134.97 Aligned_cols=90 Identities=23% Similarity=0.375 Sum_probs=83.3
Q ss_pred cCCCCCCCCEEEEcCCCCCCCHHHHHHHhhhCCCeEEEEEEeCC-CCCcceEEEEEEcCHHHHHHHHHHhCCCccCCceE
Q 029496 13 RSSSIESGTKLYISNLEYGVSNEDIKELFSEVGELKRCSVHFDR-SGRSKGTAEVVLTRRADAIAAVKRYNNVQLDGKPM 91 (192)
Q Consensus 13 ~~~~~~~~~~l~V~nL~~~~te~~L~~~f~~~G~i~~v~i~~~~-tg~~~g~afV~f~~~~~a~~Ai~~l~~~~l~g~~i 91 (192)
......+.++|||+|||+++++++|+++|++||.|..|.|+.++ ++.+++||||+|.+.++|++||+.|++..|+|+.|
T Consensus 8 ~~~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l 87 (103)
T 2cq0_A 8 PNRRADDNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVSGFGYDHLIL 87 (103)
T ss_dssp SCCCCSSSEEEEEESCCTTCCHHHHHTTSTTTCCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHHTTTCEETTEEC
T ss_pred CCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHcCCCeeCCcEE
Confidence 34456778999999999999999999999999999999999998 99999999999999999999999999999999999
Q ss_pred EEEEeecCCCC
Q 029496 92 KIEIIGTNIGP 102 (192)
Q Consensus 92 ~V~~~~~~~~~ 102 (192)
+|+++.++...
T Consensus 88 ~v~~a~~~~~~ 98 (103)
T 2cq0_A 88 NVEWAKPSTNS 98 (103)
T ss_dssp EEEESSCCCCS
T ss_pred EEEECCCCCCC
Confidence 99999875543
No 7
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.87 E-value=6.4e-21 Score=134.16 Aligned_cols=89 Identities=25% Similarity=0.478 Sum_probs=81.9
Q ss_pred cCCCCCCCCEEEEcCCCCCCCHHHHHHHhhhCCCeEEEEEEeCCCCCcceEEEEEEcCHHHHHHHHHHhCCCccCCceEE
Q 029496 13 RSSSIESGTKLYISNLEYGVSNEDIKELFSEVGELKRCSVHFDRSGRSKGTAEVVLTRRADAIAAVKRYNNVQLDGKPMK 92 (192)
Q Consensus 13 ~~~~~~~~~~l~V~nL~~~~te~~L~~~f~~~G~i~~v~i~~~~tg~~~g~afV~f~~~~~a~~Ai~~l~~~~l~g~~i~ 92 (192)
......+.++|||+|||+++++++|+++|.+||.|..|.|+.++++++++||||+|.+.++|++|++.|++..|+++.|.
T Consensus 8 ~~~~~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 87 (114)
T 2do0_A 8 ALQAGRLGSTVFVANLDYKVGWKKLKEVFSMAGVVVRADILEDKDGKSRGIGTVTFEQSIEAVQAISMFNGQLLFDRPMH 87 (114)
T ss_dssp CCCCCCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTCSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECE
T ss_pred CcccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCEeCCCEEE
Confidence 33455678999999999999999999999999999999999999899999999999999999999999999999999999
Q ss_pred EEEeecCCC
Q 029496 93 IEIIGTNIG 101 (192)
Q Consensus 93 V~~~~~~~~ 101 (192)
|+++.....
T Consensus 88 v~~a~~~~~ 96 (114)
T 2do0_A 88 VKMDERALP 96 (114)
T ss_dssp EEECSCCCC
T ss_pred EEEcccCCC
Confidence 999876444
No 8
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=99.87 E-value=2.3e-21 Score=136.85 Aligned_cols=91 Identities=21% Similarity=0.314 Sum_probs=83.3
Q ss_pred CCCCCCCCEEEEcCCCCCCCHHHHHHHhhhCCCeEEEEEEeCC-CCCcceEEEEEEcCHHHHHHHHHHhCCCccCCceEE
Q 029496 14 SSSIESGTKLYISNLEYGVSNEDIKELFSEVGELKRCSVHFDR-SGRSKGTAEVVLTRRADAIAAVKRYNNVQLDGKPMK 92 (192)
Q Consensus 14 ~~~~~~~~~l~V~nL~~~~te~~L~~~f~~~G~i~~v~i~~~~-tg~~~g~afV~f~~~~~a~~Ai~~l~~~~l~g~~i~ 92 (192)
.....+.++|||+|||+++++++|+++|.+||.|..|.|+.++ ++++++||||+|.+.++|++||+.|++..|+|+.|+
T Consensus 19 ~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 98 (115)
T 2cpz_A 19 QKEGPEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGMKRLK 98 (115)
T ss_dssp CCCCSTTCCEEEESCCSSCCHHHHHHHHGGGSCCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECE
T ss_pred CcCCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCCcCccEEEEECCHHHHHHHHHHcCCCEECCEEEE
Confidence 3455567899999999999999999999999999999999998 999999999999999999999999999999999999
Q ss_pred EEEeecCCCCCC
Q 029496 93 IEIIGTNIGPPA 104 (192)
Q Consensus 93 V~~~~~~~~~~~ 104 (192)
|++++++....+
T Consensus 99 V~~a~~~~~~~~ 110 (115)
T 2cpz_A 99 VQLKRSKNDSKS 110 (115)
T ss_dssp EECCCCSCCCCC
T ss_pred EEEcCCCCcCCC
Confidence 999987655433
No 9
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.87 E-value=2.4e-21 Score=133.77 Aligned_cols=90 Identities=23% Similarity=0.429 Sum_probs=83.1
Q ss_pred cCCCCCCCCEEEEcCCCCCCCHHHHHHHhhhCCCeEEEEEEeCC-CCCcceEEEEEEcCHHHHHHHHHHhCCCccCCceE
Q 029496 13 RSSSIESGTKLYISNLEYGVSNEDIKELFSEVGELKRCSVHFDR-SGRSKGTAEVVLTRRADAIAAVKRYNNVQLDGKPM 91 (192)
Q Consensus 13 ~~~~~~~~~~l~V~nL~~~~te~~L~~~f~~~G~i~~v~i~~~~-tg~~~g~afV~f~~~~~a~~Ai~~l~~~~l~g~~i 91 (192)
......+.++|||+|||+++++++|+++|.+||.|..|.|+.++ ++.+++||||+|.+.++|++|++.|++..|+|+.|
T Consensus 5 ~~~~~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l 84 (102)
T 1x5s_A 5 SSGMASDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQI 84 (102)
T ss_dssp CCCCCCCCSEEEEESCCTTCCHHHHHHHHHHHSCCCEEEECCCSSSCSCCSEEEEECSSHHHHHHHHHHHTTCCTTSCCC
T ss_pred CCCCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCeEE
Confidence 34556788999999999999999999999999999999999998 89999999999999999999999999999999999
Q ss_pred EEEEeecCCCC
Q 029496 92 KIEIIGTNIGP 102 (192)
Q Consensus 92 ~V~~~~~~~~~ 102 (192)
+|+++.+....
T Consensus 85 ~v~~a~~~~~~ 95 (102)
T 1x5s_A 85 RVDQAGKSSDN 95 (102)
T ss_dssp EEEEEECCCCC
T ss_pred EEEECCCCCCC
Confidence 99999875543
No 10
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.86 E-value=3.7e-21 Score=132.16 Aligned_cols=88 Identities=15% Similarity=0.283 Sum_probs=81.5
Q ss_pred CCCCCCCCEEEEcCCCCCCCHHHHHHHhhhCCCeEEEEEEeCC-CCCcceEEEEEEcCHHHHHHHHHHhCCCccCCceEE
Q 029496 14 SSSIESGTKLYISNLEYGVSNEDIKELFSEVGELKRCSVHFDR-SGRSKGTAEVVLTRRADAIAAVKRYNNVQLDGKPMK 92 (192)
Q Consensus 14 ~~~~~~~~~l~V~nL~~~~te~~L~~~f~~~G~i~~v~i~~~~-tg~~~g~afV~f~~~~~a~~Ai~~l~~~~l~g~~i~ 92 (192)
.+...+.++|||+|||+++++++|+++|.+||.|..|.|+.++ ++.+++||||+|.+.++|++||+ |++..|+|+.|+
T Consensus 4 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~l~ 82 (99)
T 2dgs_A 4 GSSGSKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVN-MHFHDIMGKKVE 82 (99)
T ss_dssp CCCCSSCCEEEEESCCSSCCHHHHHHHHSSSSCEEEEEECCCTTTCSCCSEEEEEESSHHHHHHHHH-HCCCBSSSCBCE
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCCCceEEEEECCHHHHHHHHH-hCCCEECCeEEE
Confidence 3456778999999999999999999999999999999999998 89999999999999999999998 999999999999
Q ss_pred EEEeecCCCC
Q 029496 93 IEIIGTNIGP 102 (192)
Q Consensus 93 V~~~~~~~~~ 102 (192)
|+++.++...
T Consensus 83 V~~a~~~~~~ 92 (99)
T 2dgs_A 83 VKRAEPRDSK 92 (99)
T ss_dssp EEECCCCCCC
T ss_pred EEECCCCccc
Confidence 9999875554
No 11
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.86 E-value=2.1e-21 Score=134.79 Aligned_cols=91 Identities=24% Similarity=0.349 Sum_probs=84.1
Q ss_pred cccCCCCCCCCEEEEcCCCCCCCHHHHHHHhhhCCCeEEEEEEeCC-CCCcceEEEEEEcCHHHHHHHHHHhCCCccCCc
Q 029496 11 AARSSSIESGTKLYISNLEYGVSNEDIKELFSEVGELKRCSVHFDR-SGRSKGTAEVVLTRRADAIAAVKRYNNVQLDGK 89 (192)
Q Consensus 11 ~~~~~~~~~~~~l~V~nL~~~~te~~L~~~f~~~G~i~~v~i~~~~-tg~~~g~afV~f~~~~~a~~Ai~~l~~~~l~g~ 89 (192)
....+...+.++|||+|||+++++++|+++|++||.|..|.|+.++ ++.+++||||+|.+.++|++|++.|++..|+|+
T Consensus 6 ~~~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~ 85 (105)
T 1x5u_A 6 SGPISERNQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMDMIKLYGK 85 (105)
T ss_dssp SCCCCCCCTTTEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCSBCSCEEEEESSHHHHHHHHHHSSSCBCSSC
T ss_pred CCCcccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcCCcEEEEEECCHHHHHHHHHHhCCCeECCe
Confidence 3445667788999999999999999999999999999999999998 999999999999999999999999999999999
Q ss_pred eEEEEEeecCCC
Q 029496 90 PMKIEIIGTNIG 101 (192)
Q Consensus 90 ~i~V~~~~~~~~ 101 (192)
.|+|+++.+...
T Consensus 86 ~l~v~~a~~~~~ 97 (105)
T 1x5u_A 86 PIRVNKASAHNK 97 (105)
T ss_dssp BCEEEETTTTSC
T ss_pred EEEEEECCCCCc
Confidence 999999987544
No 12
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=99.86 E-value=6.1e-21 Score=132.40 Aligned_cols=88 Identities=26% Similarity=0.353 Sum_probs=81.7
Q ss_pred CCCCCCCEEEEcCCCCCCCHHHHHHHhhhCCCeEEEEEEeCCCCCcceEEEEEEcCHHHHHHHHHHhCCCccCC---ceE
Q 029496 15 SSIESGTKLYISNLEYGVSNEDIKELFSEVGELKRCSVHFDRSGRSKGTAEVVLTRRADAIAAVKRYNNVQLDG---KPM 91 (192)
Q Consensus 15 ~~~~~~~~l~V~nL~~~~te~~L~~~f~~~G~i~~v~i~~~~tg~~~g~afV~f~~~~~a~~Ai~~l~~~~l~g---~~i 91 (192)
....+.++|||+|||+++++++|+++|.+||.|..|.|+.++++.+++||||+|.+.++|++||+.|++..|.+ +.|
T Consensus 10 ~~~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~gg~~~~l 89 (105)
T 2dnh_A 10 SRGGRDRKLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGPDGSSKGCAFVKFSSHTEAQAAIHALHGSQTMPGASSSL 89 (105)
T ss_dssp CSCCCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECSSSCEEEEEEEEESSHHHHHHHHHHHSSCCCCTTCSSCC
T ss_pred ccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcCcEEEEEeCCHHHHHHHHHHHcCCccCCCCCccE
Confidence 44567899999999999999999999999999999999999999999999999999999999999999999998 999
Q ss_pred EEEEeecCCCC
Q 029496 92 KIEIIGTNIGP 102 (192)
Q Consensus 92 ~V~~~~~~~~~ 102 (192)
+|+++.+....
T Consensus 90 ~V~~a~~~~~~ 100 (105)
T 2dnh_A 90 VVKFADTDKES 100 (105)
T ss_dssp EEEESCSSCCC
T ss_pred EEEECccCccc
Confidence 99999876554
No 13
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.86 E-value=4.8e-21 Score=130.50 Aligned_cols=84 Identities=21% Similarity=0.499 Sum_probs=79.4
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHhhhCCCeEEEEEEeCC-CCCcceEEEEEEcCHHHHHHHHHHhCCCccCCceEEEEEe
Q 029496 18 ESGTKLYISNLEYGVSNEDIKELFSEVGELKRCSVHFDR-SGRSKGTAEVVLTRRADAIAAVKRYNNVQLDGKPMKIEII 96 (192)
Q Consensus 18 ~~~~~l~V~nL~~~~te~~L~~~f~~~G~i~~v~i~~~~-tg~~~g~afV~f~~~~~a~~Ai~~l~~~~l~g~~i~V~~~ 96 (192)
.+.++|||+|||.++++++|+++|++||.|..|.|+.++ ++++++||||+|.+.++|++|++.|++..|+|+.|+|+++
T Consensus 3 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 82 (95)
T 2dnz_A 3 SGSSGLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFELAGRPMRVGHV 82 (95)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEECCSSSCCCCSEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEEES
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEEc
Confidence 567899999999999999999999999999999999998 8999999999999999999999999999999999999999
Q ss_pred ecCCC
Q 029496 97 GTNIG 101 (192)
Q Consensus 97 ~~~~~ 101 (192)
.++..
T Consensus 83 ~~~~~ 87 (95)
T 2dnz_A 83 TERLD 87 (95)
T ss_dssp SCCCC
T ss_pred ccccC
Confidence 76444
No 14
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.86 E-value=1.7e-21 Score=134.87 Aligned_cols=90 Identities=19% Similarity=0.348 Sum_probs=83.3
Q ss_pred cCCCCCCCCEEEEcCCCCCCCHHHHHHHhhhCCCeEEEEEEeCC-CCCcceEEEEEEcCHHHHHHHHHHhCCCccCCceE
Q 029496 13 RSSSIESGTKLYISNLEYGVSNEDIKELFSEVGELKRCSVHFDR-SGRSKGTAEVVLTRRADAIAAVKRYNNVQLDGKPM 91 (192)
Q Consensus 13 ~~~~~~~~~~l~V~nL~~~~te~~L~~~f~~~G~i~~v~i~~~~-tg~~~g~afV~f~~~~~a~~Ai~~l~~~~l~g~~i 91 (192)
.++...+.++|||+|||+++++++|+++|.+||.|..|.|+.++ ++.+++||||+|.+.++|++|++.|++..|+|+.|
T Consensus 6 ~~~~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l 85 (103)
T 2dnm_A 6 SGPDVDGMITLKVDNLTYRTSPDSLRRVFEKYGRVGDVYIPREPHTKAPRGFAFVRFHDRRDAQDAEAAMDGAELDGREL 85 (103)
T ss_dssp CSSCCSCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCBCSSSCSBCSCEEEEESSSSHHHHHHHHHSSCCBTTBCC
T ss_pred CCCCCCCCeEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCCCeEEEEEECCHHHHHHHHHHcCCCEECCcEE
Confidence 34566778999999999999999999999999999999999998 89999999999999999999999999999999999
Q ss_pred EEEEeecCCCC
Q 029496 92 KIEIIGTNIGP 102 (192)
Q Consensus 92 ~V~~~~~~~~~ 102 (192)
.|+++......
T Consensus 86 ~V~~a~~~~~~ 96 (103)
T 2dnm_A 86 RVQVARYGRRD 96 (103)
T ss_dssp EEEECSSCCSC
T ss_pred EEEECCcCCCC
Confidence 99999875543
No 15
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.86 E-value=3.6e-21 Score=132.19 Aligned_cols=88 Identities=24% Similarity=0.347 Sum_probs=82.2
Q ss_pred CCCCCCCEEEEcCCCCCCCHHHHHHHhhhCCCeEEEEEEeCC-CCCcceEEEEEEcCHHHHHHHHHHhCCCccCCceEEE
Q 029496 15 SSIESGTKLYISNLEYGVSNEDIKELFSEVGELKRCSVHFDR-SGRSKGTAEVVLTRRADAIAAVKRYNNVQLDGKPMKI 93 (192)
Q Consensus 15 ~~~~~~~~l~V~nL~~~~te~~L~~~f~~~G~i~~v~i~~~~-tg~~~g~afV~f~~~~~a~~Ai~~l~~~~l~g~~i~V 93 (192)
+...+.++|||+|||+++++++|+++|.+||.|..|.|+.++ ++.+++||||+|.+.++|++|++.|++..|+|+.|+|
T Consensus 3 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V 82 (99)
T 1whw_A 3 SGSSGSGRLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVDGQVFQGRMLHV 82 (99)
T ss_dssp CCCCSCEEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCCCTTTCCCCSEEEEEESSHHHHHHHHHHTTTEESSSCEEEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHhCCCEECCcEEEE
Confidence 345678999999999999999999999999999999999998 9999999999999999999999999999999999999
Q ss_pred EEeecCCCC
Q 029496 94 EIIGTNIGP 102 (192)
Q Consensus 94 ~~~~~~~~~ 102 (192)
+++.++...
T Consensus 83 ~~a~~~~~~ 91 (99)
T 1whw_A 83 LPSTIKKEA 91 (99)
T ss_dssp EECCCCSTT
T ss_pred EEcCCCccc
Confidence 999876553
No 16
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.86 E-value=8.8e-21 Score=131.21 Aligned_cols=90 Identities=24% Similarity=0.398 Sum_probs=82.6
Q ss_pred cCCCCCCCCEEEEcCCCCCCCHHHHHHHhhhCCCeEEEEEEeCCCCCcceEEEEEEcCHHHHHHHHHHhCCCccCCceEE
Q 029496 13 RSSSIESGTKLYISNLEYGVSNEDIKELFSEVGELKRCSVHFDRSGRSKGTAEVVLTRRADAIAAVKRYNNVQLDGKPMK 92 (192)
Q Consensus 13 ~~~~~~~~~~l~V~nL~~~~te~~L~~~f~~~G~i~~v~i~~~~tg~~~g~afV~f~~~~~a~~Ai~~l~~~~l~g~~i~ 92 (192)
......+.++|||+|||+++++++|+++|.+||.|..|.|+.+ ++.+++||||+|.+.++|++|++.|++..|.++.|.
T Consensus 8 ~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~-~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 86 (103)
T 2d9p_A 8 DRITRYQVVNLYVKNLDDGIDDERLRKAFSPFGTITSAKVMME-GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLY 86 (103)
T ss_dssp CCCCCSSCCCEEEECCCTTCCHHHHHHTTTTTSCEEEEEEEEC-SSSEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCE
T ss_pred CccCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC-CCCcCEEEEEEECCHHHHHHHHHHhCCCEeCCcEEE
Confidence 3345668899999999999999999999999999999999998 889999999999999999999999999999999999
Q ss_pred EEEeecCCCCC
Q 029496 93 IEIIGTNIGPP 103 (192)
Q Consensus 93 V~~~~~~~~~~ 103 (192)
|+++.++....
T Consensus 87 V~~a~~~~~~~ 97 (103)
T 2d9p_A 87 VALAQRKEERQ 97 (103)
T ss_dssp EEECSSCCCCC
T ss_pred EEEecccccCC
Confidence 99998765543
No 17
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.86 E-value=2.1e-21 Score=134.02 Aligned_cols=90 Identities=20% Similarity=0.308 Sum_probs=82.8
Q ss_pred CCCCCCCCEEEEcCCCCCCCHHHHHHHhhhCCCeEEEEEEeCC-CCCcceEEEEEEcCHHHHHHHHHHhCCCccCCceEE
Q 029496 14 SSSIESGTKLYISNLEYGVSNEDIKELFSEVGELKRCSVHFDR-SGRSKGTAEVVLTRRADAIAAVKRYNNVQLDGKPMK 92 (192)
Q Consensus 14 ~~~~~~~~~l~V~nL~~~~te~~L~~~f~~~G~i~~v~i~~~~-tg~~~g~afV~f~~~~~a~~Ai~~l~~~~l~g~~i~ 92 (192)
.....+.++|||+|||+++++++|+++|.+||.|..|.|+.++ ++++++||||+|.+.++|++|++.|++..|+|+.|+
T Consensus 6 ~~~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 85 (102)
T 2cqb_A 6 SGMATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIR 85 (102)
T ss_dssp SCSCCCCSCEEEESCCSSCCHHHHHHHHTTTSCCCCEECCCCSSSCCCSSEEEECCSSHHHHHHHHHHHTTEEETTEEEE
T ss_pred CCcCCCCCEEEEeCCCCCCCHHHHHHHhhccCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEE
Confidence 3455678999999999999999999999999999999999997 899999999999999999999999999999999999
Q ss_pred EEEeecCCCCC
Q 029496 93 IEIIGTNIGPP 103 (192)
Q Consensus 93 V~~~~~~~~~~ 103 (192)
|+++.+.....
T Consensus 86 V~~a~~~~~~~ 96 (102)
T 2cqb_A 86 VNLAKPMRIKE 96 (102)
T ss_dssp EEECCCCCCCC
T ss_pred EEeCCCCCCCC
Confidence 99998765543
No 18
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.86 E-value=3.2e-21 Score=131.15 Aligned_cols=86 Identities=27% Similarity=0.444 Sum_probs=79.9
Q ss_pred ccCCCCCCCCEEEEcCCCCCCCHHHHHHHhhhCCCeEEEEEEeCC-CCCcceEEEEEEcCHHHHHHHHHHhCCCccCCce
Q 029496 12 ARSSSIESGTKLYISNLEYGVSNEDIKELFSEVGELKRCSVHFDR-SGRSKGTAEVVLTRRADAIAAVKRYNNVQLDGKP 90 (192)
Q Consensus 12 ~~~~~~~~~~~l~V~nL~~~~te~~L~~~f~~~G~i~~v~i~~~~-tg~~~g~afV~f~~~~~a~~Ai~~l~~~~l~g~~ 90 (192)
.......+.++|||+|||+++++++|+++|++||.|..|.|+.++ ++.+++||||+|.+.++|++|++.|++..|+|+.
T Consensus 8 ~~~~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~ 87 (94)
T 2e5h_A 8 MSGGLAPSKSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRAINNKQLFGRV 87 (94)
T ss_dssp CCCSCCCCTTSEEEESCCTTSCHHHHHHHTTTTSCEEEEEECCCSSSCCCTTCEEEEESCHHHHHHHHHHTTTEEETTEE
T ss_pred CCCCCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHcCCCeeCCcE
Confidence 444556778899999999999999999999999999999999998 8999999999999999999999999999999999
Q ss_pred EEEEEee
Q 029496 91 MKIEIIG 97 (192)
Q Consensus 91 i~V~~~~ 97 (192)
|+|++++
T Consensus 88 l~v~~ak 94 (94)
T 2e5h_A 88 IKASIAI 94 (94)
T ss_dssp EEEEECC
T ss_pred EEEEecC
Confidence 9999874
No 19
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.86 E-value=3.9e-21 Score=130.88 Aligned_cols=87 Identities=26% Similarity=0.403 Sum_probs=81.0
Q ss_pred ccCCCCCCCCEEEEcCCCCCCCHHHHHHHhhhCCCeEEEEEEeCC-CCCcceEEEEEEcCHHHHHHHHHHhCCCccCCce
Q 029496 12 ARSSSIESGTKLYISNLEYGVSNEDIKELFSEVGELKRCSVHFDR-SGRSKGTAEVVLTRRADAIAAVKRYNNVQLDGKP 90 (192)
Q Consensus 12 ~~~~~~~~~~~l~V~nL~~~~te~~L~~~f~~~G~i~~v~i~~~~-tg~~~g~afV~f~~~~~a~~Ai~~l~~~~l~g~~ 90 (192)
.......+.++|||+|||+++++++|+++|++||.|..|.|+.++ ++.+++||||+|.+.++|++|++.|++..|+|+.
T Consensus 7 ~~~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~ 86 (95)
T 2cqc_A 7 GNRANPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRR 86 (95)
T ss_dssp CCCCSCCGGGCEEEESCCSSCCHHHHHHHHHTTSCEEEEEEEECSSSSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEE
T ss_pred CCCCCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEE
Confidence 344566778899999999999999999999999999999999998 8999999999999999999999999999999999
Q ss_pred EEEEEeec
Q 029496 91 MKIEIIGT 98 (192)
Q Consensus 91 i~V~~~~~ 98 (192)
|+|+++++
T Consensus 87 l~v~~a~~ 94 (95)
T 2cqc_A 87 IRVSGPSS 94 (95)
T ss_dssp EEEECCSC
T ss_pred EEEEecCC
Confidence 99999864
No 20
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.86 E-value=1.6e-20 Score=129.84 Aligned_cols=93 Identities=20% Similarity=0.409 Sum_probs=83.0
Q ss_pred cccCCCCCCCCEEEEcCCCCCCCHHHHHHHhhhCCCeEEEEEEeCCCCCcceEEEEEEcCHHHHHHHHHHhCCCccCCce
Q 029496 11 AARSSSIESGTKLYISNLEYGVSNEDIKELFSEVGELKRCSVHFDRSGRSKGTAEVVLTRRADAIAAVKRYNNVQLDGKP 90 (192)
Q Consensus 11 ~~~~~~~~~~~~l~V~nL~~~~te~~L~~~f~~~G~i~~v~i~~~~tg~~~g~afV~f~~~~~a~~Ai~~l~~~~l~g~~ 90 (192)
........+.++|||+|||+++++++|+++|.+||.|..|.|+.++.. +++||||+|.+.++|++|++.|++..|+|+.
T Consensus 6 ~~~~~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~-~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~ 84 (103)
T 2cq3_A 6 SGNSESKSTPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERG-SKGFGFVTFENSADADRAREKLHGTVVEGRK 84 (103)
T ss_dssp CCCSCCSCCCCEEEEESCCTTCCHHHHHHHGGGTSCEEEEEEECCTTT-TCCEEEEEESCHHHHHHHHHHHTTCEETTEE
T ss_pred CCCCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCC-CcEEEEEEECCHHHHHHHHHHhCCCEECCEE
Confidence 344456677899999999999999999999999999999999988743 7999999999999999999999999999999
Q ss_pred EEEEEeecCCCCCC
Q 029496 91 MKIEIIGTNIGPPA 104 (192)
Q Consensus 91 i~V~~~~~~~~~~~ 104 (192)
|+|+++.++.....
T Consensus 85 l~v~~a~~~~~~~~ 98 (103)
T 2cq3_A 85 IEVNNATARVMTNS 98 (103)
T ss_dssp CEEEECCSSCCCCC
T ss_pred EEEEEcccCCCCCC
Confidence 99999987655433
No 21
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=99.85 E-value=5e-21 Score=128.28 Aligned_cols=83 Identities=20% Similarity=0.338 Sum_probs=76.2
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHhhhCCCeEEEEEEeCC-CCCcceEEEEEEcCHHHHHHHHHHhCCCccCCceEEEEE
Q 029496 17 IESGTKLYISNLEYGVSNEDIKELFSEVGELKRCSVHFDR-SGRSKGTAEVVLTRRADAIAAVKRYNNVQLDGKPMKIEI 95 (192)
Q Consensus 17 ~~~~~~l~V~nL~~~~te~~L~~~f~~~G~i~~v~i~~~~-tg~~~g~afV~f~~~~~a~~Ai~~l~~~~l~g~~i~V~~ 95 (192)
..+.++|||+|||.++++++|+++|++||.|..+.++.++ ++.+++||||+|.+.++|++|++.|++..|+|+.|+|++
T Consensus 3 ~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 82 (87)
T 3bs9_A 3 LGSHFHVFVGDLSPEITTAAIAAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNW 82 (87)
T ss_dssp ---CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCceEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEe
Confidence 3567899999999999999999999999999999999998 999999999999999999999999999999999999999
Q ss_pred eecC
Q 029496 96 IGTN 99 (192)
Q Consensus 96 ~~~~ 99 (192)
++++
T Consensus 83 a~~k 86 (87)
T 3bs9_A 83 ATRK 86 (87)
T ss_dssp EC--
T ss_pred cCCC
Confidence 9763
No 22
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.85 E-value=9.8e-21 Score=131.67 Aligned_cols=91 Identities=22% Similarity=0.397 Sum_probs=83.4
Q ss_pred ccCCCCCCCCEEEEcCCCCCCCHHHHHHHhhhCCCeEEEEEEeC-C-CCCcceEEEEEEcCHHHHHHHHHHh-CCCccCC
Q 029496 12 ARSSSIESGTKLYISNLEYGVSNEDIKELFSEVGELKRCSVHFD-R-SGRSKGTAEVVLTRRADAIAAVKRY-NNVQLDG 88 (192)
Q Consensus 12 ~~~~~~~~~~~l~V~nL~~~~te~~L~~~f~~~G~i~~v~i~~~-~-tg~~~g~afV~f~~~~~a~~Ai~~l-~~~~l~g 88 (192)
.......+.++|||+|||+++++++|+++|.+||.|..|.|+.+ + ++.+++||||+|.+.++|++||+.| ++..|.|
T Consensus 7 ~~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~~g 86 (107)
T 2cph_A 7 GQVPKKQTTSKILVRNIPFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNALCHSTHLYG 86 (107)
T ss_dssp CSSCCSSCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCCCCSSSCSSCSEEEEEESSHHHHHHHHHHHHTCCBSSS
T ss_pred cccccCCCCCEEEEeCCCCcCCHHHHHHHHHccCCeEEEEEecCCCCCCCcCceEEEEECCHHHHHHHHHHhccCCeECC
Confidence 34456677899999999999999999999999999999999999 5 8999999999999999999999999 9999999
Q ss_pred ceEEEEEeecCCCC
Q 029496 89 KPMKIEIIGTNIGP 102 (192)
Q Consensus 89 ~~i~V~~~~~~~~~ 102 (192)
+.|+|+++.+....
T Consensus 87 ~~l~v~~a~~~~~~ 100 (107)
T 2cph_A 87 RRLVLEWADSEVTV 100 (107)
T ss_dssp CBCEEEECCCCCCC
T ss_pred CEEEEEeCCCCCCC
Confidence 99999999875543
No 23
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=99.85 E-value=3.5e-21 Score=137.91 Aligned_cols=88 Identities=26% Similarity=0.382 Sum_probs=81.6
Q ss_pred CCCCCCCCEEEEcCCCCCCCHHHHHHHhhhCCCeEEEEEEeCC-CCCcceEEEEEEcCHHHHHHHHHHhCCCccCCceEE
Q 029496 14 SSSIESGTKLYISNLEYGVSNEDIKELFSEVGELKRCSVHFDR-SGRSKGTAEVVLTRRADAIAAVKRYNNVQLDGKPMK 92 (192)
Q Consensus 14 ~~~~~~~~~l~V~nL~~~~te~~L~~~f~~~G~i~~v~i~~~~-tg~~~g~afV~f~~~~~a~~Ai~~l~~~~l~g~~i~ 92 (192)
+....+.++|||+|||+++|+++|+++|.+||.|..|.|+.++ ++++++||||+|.+.++|++||+.|++..|+|+.|.
T Consensus 16 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 95 (126)
T 3ex7_B 16 PQRSVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPIS 95 (126)
T ss_dssp BCCCSSSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTSSBCSCEEEEESSHHHHHHHHHHHTTCBSSSSBCE
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCeEEE
Confidence 3455677899999999999999999999999999999999998 999999999999999999999999999999999999
Q ss_pred EEEeecCCC
Q 029496 93 IEIIGTNIG 101 (192)
Q Consensus 93 V~~~~~~~~ 101 (192)
|+++.+...
T Consensus 96 v~~a~~~~~ 104 (126)
T 3ex7_B 96 VDWCFVRGP 104 (126)
T ss_dssp EEESEESSS
T ss_pred EEEecCCCC
Confidence 999986443
No 24
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.85 E-value=1.1e-20 Score=130.87 Aligned_cols=89 Identities=17% Similarity=0.351 Sum_probs=81.3
Q ss_pred cccCCCCCCCCEEEEcCCCCCCCHHHHHHHhhhCCCeEEEEEEeCC-CCCcceEEEEEEcCHHHHHHHHHHhCCCccCCc
Q 029496 11 AARSSSIESGTKLYISNLEYGVSNEDIKELFSEVGELKRCSVHFDR-SGRSKGTAEVVLTRRADAIAAVKRYNNVQLDGK 89 (192)
Q Consensus 11 ~~~~~~~~~~~~l~V~nL~~~~te~~L~~~f~~~G~i~~v~i~~~~-tg~~~g~afV~f~~~~~a~~Ai~~l~~~~l~g~ 89 (192)
.....+..+.++|||+|||+++++++|+++|.+|+ |..|.|+.++ +++++|||||+|.+.++|++|+ .|++..|.|+
T Consensus 6 ~~~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g-i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~ 83 (103)
T 2dng_A 6 SGKELPTEPPYTAYVGNLPFNTVQGDIDAIFKDLS-IRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEAL-TYDGALLGDR 83 (103)
T ss_dssp CCCCCCSSSCEEEEEESCCTTCCHHHHHHHTTTSC-EEEEEEEECSSSCSEEEEEEEEESSHHHHHHHG-GGTTCEETTE
T ss_pred CCCCCCCCCCeEEEEeCCCCCCCHHHHHHHHHhCC-ceEEEEeecCCCCccceEEEEEECCHHHHHHHH-hhCCCeECCe
Confidence 34455667789999999999999999999999996 9999999998 8999999999999999999999 8999999999
Q ss_pred eEEEEEeecCCC
Q 029496 90 PMKIEIIGTNIG 101 (192)
Q Consensus 90 ~i~V~~~~~~~~ 101 (192)
.|+|+++.+...
T Consensus 84 ~l~V~~a~~~~~ 95 (103)
T 2dng_A 84 SLRVDIAEGRKQ 95 (103)
T ss_dssp ECEEEECCCCCC
T ss_pred EEEEEEecCCCC
Confidence 999999987544
No 25
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=99.85 E-value=3.7e-21 Score=131.07 Aligned_cols=87 Identities=24% Similarity=0.386 Sum_probs=78.9
Q ss_pred ccCCCCCCCCEEEEcCCCCCCCHHHHHHHhhhCCCeEEEEEEeCCCCCcceEEEEEEcCHHHHHHHHHHhCCCccCCceE
Q 029496 12 ARSSSIESGTKLYISNLEYGVSNEDIKELFSEVGELKRCSVHFDRSGRSKGTAEVVLTRRADAIAAVKRYNNVQLDGKPM 91 (192)
Q Consensus 12 ~~~~~~~~~~~l~V~nL~~~~te~~L~~~f~~~G~i~~v~i~~~~tg~~~g~afV~f~~~~~a~~Ai~~l~~~~l~g~~i 91 (192)
..+....+.++|||+|||+.+++++|+++|++||.|..|.|+.++++++++||||+|.+.++|++|++.|++..|+|+.|
T Consensus 8 ~~~~~~~~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l 87 (95)
T 2ywk_A 8 MFPAQEEADRTVFVGNLEARVREEILYELFLQAGPLTKVTICKDREGKPKSFGFVCFKHPESVSYAIALLNGIRLYGRPI 87 (95)
T ss_dssp ----CTTGGGEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSTHHHHHHHHHHTTCEETTEEC
T ss_pred CCCCCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCceEEEEEECCHHHHHHHHHHhCCCEECCCEE
Confidence 34456677799999999999999999999999999999999999888999999999999999999999999999999999
Q ss_pred EEEEeec
Q 029496 92 KIEIIGT 98 (192)
Q Consensus 92 ~V~~~~~ 98 (192)
+|++++.
T Consensus 88 ~V~~a~~ 94 (95)
T 2ywk_A 88 NVSGPSS 94 (95)
T ss_dssp EEECCCC
T ss_pred EEEEcCC
Confidence 9999864
No 26
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.85 E-value=8.7e-21 Score=132.78 Aligned_cols=89 Identities=24% Similarity=0.420 Sum_probs=82.5
Q ss_pred CCCCCCCCEEEEcCCCCCCCHHHHHHHhhhCCCeEEEEEEeCC-CCCcceEEEEEEcCHHHHHHHHHHhC------CCcc
Q 029496 14 SSSIESGTKLYISNLEYGVSNEDIKELFSEVGELKRCSVHFDR-SGRSKGTAEVVLTRRADAIAAVKRYN------NVQL 86 (192)
Q Consensus 14 ~~~~~~~~~l~V~nL~~~~te~~L~~~f~~~G~i~~v~i~~~~-tg~~~g~afV~f~~~~~a~~Ai~~l~------~~~l 86 (192)
+....+.++|||+|||+++++++|+++|.+||.|..|.|+.++ ++.+++||||+|.+.++|++||+.|+ +..|
T Consensus 9 ~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~~~ 88 (111)
T 1x4h_A 9 PSDVTEGKTVFIRNLSFDSEEEALGEVLQQFGDLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAAASLEAEGGGLKL 88 (111)
T ss_dssp CCCCCCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCCBCSEEEEEESSHHHHHHHHHHHCTTTTTCCEES
T ss_pred CCcCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCccEEEEEECCHHHHHHHHHHhccccccCCcEE
Confidence 4456778999999999999999999999999999999999998 89999999999999999999999999 9999
Q ss_pred CCceEEEEEeecCCCC
Q 029496 87 DGKPMKIEIIGTNIGP 102 (192)
Q Consensus 87 ~g~~i~V~~~~~~~~~ 102 (192)
+|+.|+|+++.++...
T Consensus 89 ~g~~l~v~~a~~~~~~ 104 (111)
T 1x4h_A 89 DGRQLKVDLAVTRDEA 104 (111)
T ss_dssp SSCEEEEECCCCCCCC
T ss_pred cCEEEEEEECCCCccC
Confidence 9999999999876543
No 27
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.85 E-value=1.2e-20 Score=129.78 Aligned_cols=87 Identities=24% Similarity=0.385 Sum_probs=81.1
Q ss_pred CCCCCCCCEEEEcCCCCCCCHHHHHHHhhhCCCeEEEEEEeCCCCCcceEEEEEEcCHHHHHHHHHHhCCCccCCceEEE
Q 029496 14 SSSIESGTKLYISNLEYGVSNEDIKELFSEVGELKRCSVHFDRSGRSKGTAEVVLTRRADAIAAVKRYNNVQLDGKPMKI 93 (192)
Q Consensus 14 ~~~~~~~~~l~V~nL~~~~te~~L~~~f~~~G~i~~v~i~~~~tg~~~g~afV~f~~~~~a~~Ai~~l~~~~l~g~~i~V 93 (192)
.....+.++|||+|||+++++++|+++|.+||.|..|.|+.++++++++||||+|.+.++|++|++.|++..|+|+.|+|
T Consensus 11 ~~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 90 (100)
T 2do4_A 11 YSTSLEKHKLFISGLPFSCTKEELEEICKAHGTVKDLRLVTNRAGKPKGLAYVEYENESQASQAVMKMDGMTIKENIIKV 90 (100)
T ss_dssp CSSCCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTEESSSCEEEE
T ss_pred cccCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECCCCCEEeEEEEEECCHHHHHHHHHHhCCCEECCEEEEE
Confidence 34556778999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeecCC
Q 029496 94 EIIGTNI 100 (192)
Q Consensus 94 ~~~~~~~ 100 (192)
+++.++.
T Consensus 91 ~~a~~~~ 97 (100)
T 2do4_A 91 AISNSGP 97 (100)
T ss_dssp EECCCCS
T ss_pred EECCCCC
Confidence 9997644
No 28
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=99.85 E-value=1.1e-20 Score=137.54 Aligned_cols=87 Identities=17% Similarity=0.294 Sum_probs=80.8
Q ss_pred CCCCCCCEEEEcCCCCCCCHHHHHHHhhhCCCeEEEEEEeCC-CCCcceEEEEEEcCHHHHHHHHHHhCCCccCCceEEE
Q 029496 15 SSIESGTKLYISNLEYGVSNEDIKELFSEVGELKRCSVHFDR-SGRSKGTAEVVLTRRADAIAAVKRYNNVQLDGKPMKI 93 (192)
Q Consensus 15 ~~~~~~~~l~V~nL~~~~te~~L~~~f~~~G~i~~v~i~~~~-tg~~~g~afV~f~~~~~a~~Ai~~l~~~~l~g~~i~V 93 (192)
....+.++|||+|||+++++++|+++|+.||.|..|.|+.++ ++++++||||+|.+.++|++||+.|++..|.|+.|+|
T Consensus 37 ~~~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 116 (139)
T 1u6f_A 37 PEPDVLRNLMVNYIPTTVDEVQLRQLFERYGPIESVKIVCDRETRQSRGYGFVKFQSGSSAQQAIAGLNGFNILNKRLKV 116 (139)
T ss_dssp CCTTTTSEEEEESCSTTCCHHHHHHHHHHHSCEEEEEEEEETTTTEEEEEEEEEESSHHHHHHHHHHTTTEECSSCEEEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEE
Confidence 345667899999999999999999999999999999999998 8999999999999999999999999999999999999
Q ss_pred EEeecCCC
Q 029496 94 EIIGTNIG 101 (192)
Q Consensus 94 ~~~~~~~~ 101 (192)
+++.+...
T Consensus 117 ~~a~~~~~ 124 (139)
T 1u6f_A 117 ALAASGHQ 124 (139)
T ss_dssp EESSCCCC
T ss_pred EECCCCCC
Confidence 99986443
No 29
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=99.85 E-value=1.2e-20 Score=133.65 Aligned_cols=85 Identities=27% Similarity=0.387 Sum_probs=79.8
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHhhhCCCeEEEEEEeCCCCCcceEEEEEEcCHHHHHHHHHHhCCCccCCceEEEEE
Q 029496 16 SIESGTKLYISNLEYGVSNEDIKELFSEVGELKRCSVHFDRSGRSKGTAEVVLTRRADAIAAVKRYNNVQLDGKPMKIEI 95 (192)
Q Consensus 16 ~~~~~~~l~V~nL~~~~te~~L~~~f~~~G~i~~v~i~~~~tg~~~g~afV~f~~~~~a~~Ai~~l~~~~l~g~~i~V~~ 95 (192)
..++.++|||+|||+++++++|+++|++||.|..|.|+.++++++++||||+|.+.++|++|++.|++..|+|+.|+|++
T Consensus 3 e~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 82 (116)
T 2fy1_A 3 EADHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDRTSKSRGFAFITFENPADAKNAAKDMNGKSLHGKAIKVEQ 82 (116)
T ss_dssp TTCSCCEEEEECCTTTCCHHHHHHHHHTSSCCSEEEEECSTTTTCCCEEEEECSSHHHHHHHHHHCSSCBCSSSBCEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 34667899999999999999999999999999999999998899999999999999999999999999999999999999
Q ss_pred eecCC
Q 029496 96 IGTNI 100 (192)
Q Consensus 96 ~~~~~ 100 (192)
+++..
T Consensus 83 a~~~~ 87 (116)
T 2fy1_A 83 AKKPS 87 (116)
T ss_dssp CCCSS
T ss_pred CCCCC
Confidence 98643
No 30
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.85 E-value=1.1e-20 Score=130.84 Aligned_cols=87 Identities=21% Similarity=0.297 Sum_probs=81.1
Q ss_pred CCCCCCCEEEEcCCCCCCCHHHHHHHhhh-CCCeEEEEEEeCCCCCcceEEEEEEcCHHHHHHHHHHhCCCc-cCCceEE
Q 029496 15 SSIESGTKLYISNLEYGVSNEDIKELFSE-VGELKRCSVHFDRSGRSKGTAEVVLTRRADAIAAVKRYNNVQ-LDGKPMK 92 (192)
Q Consensus 15 ~~~~~~~~l~V~nL~~~~te~~L~~~f~~-~G~i~~v~i~~~~tg~~~g~afV~f~~~~~a~~Ai~~l~~~~-l~g~~i~ 92 (192)
+...+.++|||+|||+++++++|+++|.+ ||.|..|.|+.++++.+++||||+|.+.++|++|++.|++.. |+|+.|.
T Consensus 4 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~~G~v~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~g~~l~ 83 (104)
T 2dhg_A 4 GSSGPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQTGVSKGYGFVKFTDELEQKRALTECQGAVGLGSKPVR 83 (104)
T ss_dssp CCSSCCCCEEEECCCTTCCHHHHHHHHHHHCTTEEEEEEEECTTCCEEEEEEEEESCHHHHHHHHHHTTTCCSSSSSCCC
T ss_pred CCCCCCcEEEEeCCCCCCCHHHHHHHHHHhCCCeEEEEEEECCCCCccceEEEEECCHHHHHHHHHHccCCcccCCEeEE
Confidence 45567899999999999999999999999 999999999999989999999999999999999999999999 9999999
Q ss_pred EEEeecCCC
Q 029496 93 IEIIGTNIG 101 (192)
Q Consensus 93 V~~~~~~~~ 101 (192)
|+++.++..
T Consensus 84 v~~a~~~~~ 92 (104)
T 2dhg_A 84 LSVAIPKAS 92 (104)
T ss_dssp CCBCCCCCS
T ss_pred EEEccCCCc
Confidence 999976544
No 31
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=99.85 E-value=9.5e-21 Score=131.63 Aligned_cols=86 Identities=27% Similarity=0.395 Sum_probs=80.5
Q ss_pred CCCCCCCEEEEcCCCCCCCHHHHHHHhhhCCCeEEEEEEeCC-CCCcceEEEEEEcCHHHHHHHHHHhCCCccCCceEEE
Q 029496 15 SSIESGTKLYISNLEYGVSNEDIKELFSEVGELKRCSVHFDR-SGRSKGTAEVVLTRRADAIAAVKRYNNVQLDGKPMKI 93 (192)
Q Consensus 15 ~~~~~~~~l~V~nL~~~~te~~L~~~f~~~G~i~~v~i~~~~-tg~~~g~afV~f~~~~~a~~Ai~~l~~~~l~g~~i~V 93 (192)
....+.++|||+|||+++++++|+++|++||.|..|.|+.++ ++.+++||||+|.+.++|++|++.|++..|+|+.|.|
T Consensus 18 ~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V 97 (106)
T 1p27_B 18 QRSVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISV 97 (106)
T ss_dssp CCBTTBEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESCHHHHHHHHHHHTTCBSSSSBCEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCceeeEEEEEECCHHHHHHHHHHhcCCEECCcEEEE
Confidence 345567899999999999999999999999999999999998 8999999999999999999999999999999999999
Q ss_pred EEeecCC
Q 029496 94 EIIGTNI 100 (192)
Q Consensus 94 ~~~~~~~ 100 (192)
+++.++.
T Consensus 98 ~~a~~~~ 104 (106)
T 1p27_B 98 DWCFVRG 104 (106)
T ss_dssp EESEESS
T ss_pred EeecCCC
Confidence 9998754
No 32
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=99.85 E-value=1.1e-20 Score=125.45 Aligned_cols=80 Identities=24% Similarity=0.435 Sum_probs=76.6
Q ss_pred CCEEEEcCCCCCCCHHHHHHHhhhCCCeEEEEEEeCC-CCCcceEEEEEEcCHHHHHHHHHHhCCCccCCceEEEEEeec
Q 029496 20 GTKLYISNLEYGVSNEDIKELFSEVGELKRCSVHFDR-SGRSKGTAEVVLTRRADAIAAVKRYNNVQLDGKPMKIEIIGT 98 (192)
Q Consensus 20 ~~~l~V~nL~~~~te~~L~~~f~~~G~i~~v~i~~~~-tg~~~g~afV~f~~~~~a~~Ai~~l~~~~l~g~~i~V~~~~~ 98 (192)
+++|||+|||+++++++|+++|.+||.|..+.++.++ ++.+++||||+|.+.++|++|++.|++..|+|+.|+|+++.+
T Consensus 1 t~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~ 80 (83)
T 3md1_A 1 TFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWAAK 80 (83)
T ss_dssp CEEEEEECCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred CeEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCccceEEEEECCHHHHHHHHHHhcCCeeCCcEEEEEecCc
Confidence 3689999999999999999999999999999999997 999999999999999999999999999999999999999986
Q ss_pred C
Q 029496 99 N 99 (192)
Q Consensus 99 ~ 99 (192)
+
T Consensus 81 ~ 81 (83)
T 3md1_A 81 L 81 (83)
T ss_dssp C
T ss_pred C
Confidence 4
No 33
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=99.85 E-value=1.2e-21 Score=132.54 Aligned_cols=82 Identities=23% Similarity=0.295 Sum_probs=71.8
Q ss_pred CEEEEcCCCCCCCHHHHHHHhhhCC--CeEEEEEEeCC-CCCcceEEEEEEcCHHHHHHHHHHhCCCccCCceEEEEEee
Q 029496 21 TKLYISNLEYGVSNEDIKELFSEVG--ELKRCSVHFDR-SGRSKGTAEVVLTRRADAIAAVKRYNNVQLDGKPMKIEIIG 97 (192)
Q Consensus 21 ~~l~V~nL~~~~te~~L~~~f~~~G--~i~~v~i~~~~-tg~~~g~afV~f~~~~~a~~Ai~~l~~~~l~g~~i~V~~~~ 97 (192)
.+|||+|||+++++++|+++|++|| .|.++.|+.++ +++++|||||+|.+.++|++|++.|++..|+|+.|+|+++.
T Consensus 2 ~~l~V~nL~~~~t~~~l~~~F~~~G~~~v~~v~i~~~~~~g~~kG~afV~f~~~~~a~~Ai~~l~g~~~~gr~i~V~~~~ 81 (90)
T 3p5t_L 2 IALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTPSN 81 (90)
T ss_dssp --CEEESCCTTCCHHHHHHHHHTTTCCCCCCEEEEECTTTCCEEEEEEECC-CHHHHHHHHHHGGGSCSSSCCCEECCC-
T ss_pred eEEEEeCCCCCCCHHHHHHHHHHhCCCceEEEEEEecCCCCccCcEEEEEECCHHHHHHHHHHcCCCeeCCEEEEEEECC
Confidence 5799999999999999999999999 99999999998 99999999999999999999999999999999999999998
Q ss_pred cCCCC
Q 029496 98 TNIGP 102 (192)
Q Consensus 98 ~~~~~ 102 (192)
+....
T Consensus 82 ~~~~~ 86 (90)
T 3p5t_L 82 KLEHH 86 (90)
T ss_dssp -----
T ss_pred CCccc
Confidence 75544
No 34
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.85 E-value=1.9e-20 Score=132.31 Aligned_cols=88 Identities=25% Similarity=0.412 Sum_probs=80.5
Q ss_pred cCCCCCCCCEEEEcCCCCCCCHHHHHHHhhhCCCeEEEEEEeCC-CCCcceEEEEEEcCHHHHHHHHHHhCCCccCCceE
Q 029496 13 RSSSIESGTKLYISNLEYGVSNEDIKELFSEVGELKRCSVHFDR-SGRSKGTAEVVLTRRADAIAAVKRYNNVQLDGKPM 91 (192)
Q Consensus 13 ~~~~~~~~~~l~V~nL~~~~te~~L~~~f~~~G~i~~v~i~~~~-tg~~~g~afV~f~~~~~a~~Ai~~l~~~~l~g~~i 91 (192)
......+.++|||+|||+++++++|+++|.+||.|..|.|+.++ ++++++||||+|.+.++|++||+.|++ .|.++.|
T Consensus 10 ~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~-~~~g~~l 88 (116)
T 2cqd_A 10 GSQKDTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNP-IIDGRKA 88 (116)
T ss_dssp CCCCSCSSSEEEEECCCSSCCHHHHHHHHHTTSCEEEEEESCCSSSCCCCSEEEEEESSHHHHHHHHTCSSC-EETTEEC
T ss_pred CCcCCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhCCC-cCCCEEE
Confidence 34455677899999999999999999999999999999999998 899999999999999999999999998 8999999
Q ss_pred EEEEeecCCC
Q 029496 92 KIEIIGTNIG 101 (192)
Q Consensus 92 ~V~~~~~~~~ 101 (192)
+|+++.....
T Consensus 89 ~V~~a~~~~~ 98 (116)
T 2cqd_A 89 NVNLAYLGAK 98 (116)
T ss_dssp EEEESTTTCC
T ss_pred EEEEcccCCC
Confidence 9999976443
No 35
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=99.85 E-value=1.3e-20 Score=129.51 Aligned_cols=85 Identities=24% Similarity=0.469 Sum_probs=79.7
Q ss_pred cCCCCCCCCEEEEcCCCCCCCHHHHHHHhhhCCCeEE--------EEEEeCC-CCCcceEEEEEEcCHHHHHHHHHHhCC
Q 029496 13 RSSSIESGTKLYISNLEYGVSNEDIKELFSEVGELKR--------CSVHFDR-SGRSKGTAEVVLTRRADAIAAVKRYNN 83 (192)
Q Consensus 13 ~~~~~~~~~~l~V~nL~~~~te~~L~~~f~~~G~i~~--------v~i~~~~-tg~~~g~afV~f~~~~~a~~Ai~~l~~ 83 (192)
.+++..+.++|||+|||+++++++|+++|++||.|.. +.|+.++ ++.++|||||+|.+.++|++|++.|++
T Consensus 6 ~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~g 85 (99)
T 2la6_A 6 HHHSHSDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDG 85 (99)
T ss_dssp SCCSCCCCSEEEEECCCSSCCHHHHHHHHTTTSCBCEETTTTEESEEEEECTTTCSEEEEEEEEBSSHHHHHHHHHHHTT
T ss_pred CCCCCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCEeeccccccccEEEEecCCCCCeeeEEEEEECCHHHHHHHHHHhCC
Confidence 3456678899999999999999999999999999999 9999998 899999999999999999999999999
Q ss_pred CccCCceEEEEEee
Q 029496 84 VQLDGKPMKIEIIG 97 (192)
Q Consensus 84 ~~l~g~~i~V~~~~ 97 (192)
..|.|+.|+|++++
T Consensus 86 ~~~~g~~l~V~~A~ 99 (99)
T 2la6_A 86 KEFSGNPIKVSFAT 99 (99)
T ss_dssp CBSSSSBCEEEECC
T ss_pred CEeCCcEEEEEecC
Confidence 99999999999874
No 36
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=99.85 E-value=9.6e-21 Score=131.59 Aligned_cols=88 Identities=23% Similarity=0.379 Sum_probs=81.3
Q ss_pred CCCCCCCCEEEEcCCCCCCCHHHHHHHhhhCCCeEEEEEEeCC-CCCcceEEEEEEcCHHHHHHHHHHhCCCcc---CCc
Q 029496 14 SSSIESGTKLYISNLEYGVSNEDIKELFSEVGELKRCSVHFDR-SGRSKGTAEVVLTRRADAIAAVKRYNNVQL---DGK 89 (192)
Q Consensus 14 ~~~~~~~~~l~V~nL~~~~te~~L~~~f~~~G~i~~v~i~~~~-tg~~~g~afV~f~~~~~a~~Ai~~l~~~~l---~g~ 89 (192)
.....+.++|||+|||+++++++|+++|++||.|..|.|+.++ ++++++||||+|.+.++|++|++.|++..+ .++
T Consensus 7 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~ 86 (106)
T 2dgp_A 7 GMKDHDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSALHEQKTLPGMNR 86 (106)
T ss_dssp SCCCTTCEEEEEESCCTTCCHHHHHHHHHHHSCCCEEECCCCSSSCSCCSEEEEEESSHHHHHHHHHHHTTTCCCTTCSS
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhcCCcccCCCCc
Confidence 3456677899999999999999999999999999999999998 899999999999999999999999999987 899
Q ss_pred eEEEEEeecCCC
Q 029496 90 PMKIEIIGTNIG 101 (192)
Q Consensus 90 ~i~V~~~~~~~~ 101 (192)
.|+|+++.+...
T Consensus 87 ~l~v~~a~~~~~ 98 (106)
T 2dgp_A 87 PIQVKPADSESR 98 (106)
T ss_dssp CCEEEECCCCSC
T ss_pred eEEEEECCcccc
Confidence 999999987544
No 37
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.85 E-value=8.1e-21 Score=130.39 Aligned_cols=85 Identities=21% Similarity=0.274 Sum_probs=79.7
Q ss_pred CCCCCCCEEEEcCCCCCCCHHHHHHHhhhCCCeE-EEEEEeCC-CCCcceEEEEEEcCHHHHHHHHHHhCCCccCCce--
Q 029496 15 SSIESGTKLYISNLEYGVSNEDIKELFSEVGELK-RCSVHFDR-SGRSKGTAEVVLTRRADAIAAVKRYNNVQLDGKP-- 90 (192)
Q Consensus 15 ~~~~~~~~l~V~nL~~~~te~~L~~~f~~~G~i~-~v~i~~~~-tg~~~g~afV~f~~~~~a~~Ai~~l~~~~l~g~~-- 90 (192)
....+.++|||+|||+++++++|+++|.+||.|. .|.|+.++ ++.+++||||+|.+.++|++|++.|++..|.++.
T Consensus 4 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~ 83 (99)
T 2div_A 4 GSSGMAASLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGATPA 83 (99)
T ss_dssp CCCSSSSEEEECSCCTTCCHHHHHHHHHHTTCCCCEEEEEECSSSCCEEEEEEEECSCHHHHHHHHHTTTTSEESSCSSC
T ss_pred CCCCCccEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEeecCCCCCcCCEEEEEeCCHHHHHHHHHHHcCCccCCCCcc
Confidence 4556789999999999999999999999999999 99999998 9999999999999999999999999999999999
Q ss_pred --EEEEEeecC
Q 029496 91 --MKIEIIGTN 99 (192)
Q Consensus 91 --i~V~~~~~~ 99 (192)
|+|+++++.
T Consensus 84 ~~l~v~~a~~~ 94 (99)
T 2div_A 84 KRFKLNYATYS 94 (99)
T ss_dssp EECCEEETTCC
T ss_pred eeEEEeecCCC
Confidence 999988764
No 38
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=99.85 E-value=1.4e-20 Score=130.96 Aligned_cols=85 Identities=54% Similarity=0.957 Sum_probs=79.5
Q ss_pred cCCCCCCCCEEEEcCCCCCCCHHHHHHHhhhCCCeEEEEEEeCCCCCcceEEEEEEcCHHHHHHHHHHhCCCccCCceEE
Q 029496 13 RSSSIESGTKLYISNLEYGVSNEDIKELFSEVGELKRCSVHFDRSGRSKGTAEVVLTRRADAIAAVKRYNNVQLDGKPMK 92 (192)
Q Consensus 13 ~~~~~~~~~~l~V~nL~~~~te~~L~~~f~~~G~i~~v~i~~~~tg~~~g~afV~f~~~~~a~~Ai~~l~~~~l~g~~i~ 92 (192)
.+....+.++|||+|||+.+++++|+++|.+||.|..|.|+.++++++++||||+|.+.++|++|++.|++..|.|+.|+
T Consensus 22 ~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 101 (107)
T 3ulh_A 22 GGAGVETGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDRSGRSLGTADVHFERKADALKAMKQYNGVPLDGRPMN 101 (107)
T ss_dssp --CCCCCSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECE
T ss_pred CCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEE
Confidence 34566788999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEee
Q 029496 93 IEIIG 97 (192)
Q Consensus 93 V~~~~ 97 (192)
|+++.
T Consensus 102 V~~a~ 106 (107)
T 3ulh_A 102 IQLVT 106 (107)
T ss_dssp EEEEC
T ss_pred EEEeC
Confidence 99985
No 39
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.85 E-value=2.6e-20 Score=128.80 Aligned_cols=90 Identities=24% Similarity=0.309 Sum_probs=80.8
Q ss_pred cccCCCCCCCCEEEEcCCCCCCCHHHHHHHhhhCCCeEEEEEEeCCCCCcceEEEEEEcCHHHHHHHHHHhCCCccCCce
Q 029496 11 AARSSSIESGTKLYISNLEYGVSNEDIKELFSEVGELKRCSVHFDRSGRSKGTAEVVLTRRADAIAAVKRYNNVQLDGKP 90 (192)
Q Consensus 11 ~~~~~~~~~~~~l~V~nL~~~~te~~L~~~f~~~G~i~~v~i~~~~tg~~~g~afV~f~~~~~a~~Ai~~l~~~~l~g~~ 90 (192)
........+.++|||+|||+.+++++|+++|++||.|..|.|+.++.. +++||||+|.+.++|++|++.|++..|.|+.
T Consensus 6 ~~~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~-~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~ 84 (103)
T 2cqi_A 6 SGMMEDDGQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTS-NDPYCFVEFYEHRDAAAALAAMNGRKILGKE 84 (103)
T ss_dssp CCCCCCSCCCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEEEECCCCS-SCCEEEEEESSHHHHHHHHHHHTTEEETTEE
T ss_pred CCCCCCCCCCCEEEEeCCCccCCHHHHHHHHHhcCCEeEEEEEecCCC-CCCEEEEEECCHHHHHHHHHHhCCCCcCCCe
Confidence 344456677899999999999999999999999999999999988733 5899999999999999999999999999999
Q ss_pred EEEEEeecCCC
Q 029496 91 MKIEIIGTNIG 101 (192)
Q Consensus 91 i~V~~~~~~~~ 101 (192)
|+|+++.+...
T Consensus 85 l~V~~a~~~~~ 95 (103)
T 2cqi_A 85 VKVNWATTPSS 95 (103)
T ss_dssp EEEEECCCTTC
T ss_pred EEEEECCCCcc
Confidence 99999987544
No 40
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=99.85 E-value=5.9e-21 Score=127.38 Aligned_cols=82 Identities=21% Similarity=0.368 Sum_probs=77.5
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHhhhCCCeEEEEEEeCC-CCCcceEEEEEEcCHHHHHHHHHHhCCCccCCceEEEE
Q 029496 16 SIESGTKLYISNLEYGVSNEDIKELFSEVGELKRCSVHFDR-SGRSKGTAEVVLTRRADAIAAVKRYNNVQLDGKPMKIE 94 (192)
Q Consensus 16 ~~~~~~~l~V~nL~~~~te~~L~~~f~~~G~i~~v~i~~~~-tg~~~g~afV~f~~~~~a~~Ai~~l~~~~l~g~~i~V~ 94 (192)
...+.++|||+|||+++++++|+++|++||.|..+.++.++ ++.+++||||+|.+.++|++|++.|++..|+|+.|+|+
T Consensus 3 ~~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 82 (85)
T 3mdf_A 3 MATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVN 82 (85)
T ss_dssp CCCCSSEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHhccCCEEEEEEEECCCCCccccEEEEEECCHHHHHHHHHHhCCCEECCcEEEEE
Confidence 34677999999999999999999999999999999999997 89999999999999999999999999999999999999
Q ss_pred Eee
Q 029496 95 IIG 97 (192)
Q Consensus 95 ~~~ 97 (192)
+++
T Consensus 83 ~ak 85 (85)
T 3mdf_A 83 LAK 85 (85)
T ss_dssp ECC
T ss_pred EcC
Confidence 874
No 41
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=99.84 E-value=1.2e-21 Score=133.11 Aligned_cols=82 Identities=16% Similarity=0.262 Sum_probs=75.1
Q ss_pred CCEEEEcCCCCCCCHHHHHHHhhhCC-CeEEEEEEeCC-CCCcceEEEEEEcCHHHHHHHHHHhC-CCccCCceEEEEEe
Q 029496 20 GTKLYISNLEYGVSNEDIKELFSEVG-ELKRCSVHFDR-SGRSKGTAEVVLTRRADAIAAVKRYN-NVQLDGKPMKIEII 96 (192)
Q Consensus 20 ~~~l~V~nL~~~~te~~L~~~f~~~G-~i~~v~i~~~~-tg~~~g~afV~f~~~~~a~~Ai~~l~-~~~l~g~~i~V~~~ 96 (192)
+.+|||+|||+++|+++|+++|++|| .|.+|+|+.++ ++.++|||||+|.+.++|++|++.++ +..|+|++|+|+++
T Consensus 1 S~~i~v~nLp~~~te~~l~~~F~~~G~~v~~v~i~~d~~t~~~rg~aFV~F~~~~~A~~Ai~~~~~~~~~~gr~i~V~~a 80 (91)
T 2lxi_A 1 SNIVMLRMLPQAATEDDIRGQLQSHGVQAREVRLMRNKSSGQSRGFAFVEFSHLQDATRWMEANQHSLNILGQKVSMHYS 80 (91)
T ss_dssp CCEEEEETCCSSCCHHHHHHHHHHHTCCCSBCCSSSCSSSCCCSSEEEEECSSHHHHHHHHHTTTTEEEETTEEEEEECC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHhCCEeEEEEEEecCCCCCcCceEEEEecCHHHHHHHHHhcCCCeEECCEEEEEEEc
Confidence 46899999999999999999999999 89999999998 89999999999999999999998774 56799999999999
Q ss_pred ecCCC
Q 029496 97 GTNIG 101 (192)
Q Consensus 97 ~~~~~ 101 (192)
.++..
T Consensus 81 ~~~~~ 85 (91)
T 2lxi_A 81 DPKPK 85 (91)
T ss_dssp CSCCC
T ss_pred CCCCC
Confidence 76543
No 42
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.84 E-value=1.1e-20 Score=132.88 Aligned_cols=88 Identities=22% Similarity=0.434 Sum_probs=81.5
Q ss_pred CCCCCCCCEEEEcCCCCCCCHHHHHHHhhhCCCeE--------EEEEEeCC-CCCcceEEEEEEcCHHHHHHHHHHhCCC
Q 029496 14 SSSIESGTKLYISNLEYGVSNEDIKELFSEVGELK--------RCSVHFDR-SGRSKGTAEVVLTRRADAIAAVKRYNNV 84 (192)
Q Consensus 14 ~~~~~~~~~l~V~nL~~~~te~~L~~~f~~~G~i~--------~v~i~~~~-tg~~~g~afV~f~~~~~a~~Ai~~l~~~ 84 (192)
.....+.++|||+|||+++++++|+++|.+||.|. .|.|+.++ ++++++||||+|.+.++|++||+.|++.
T Consensus 9 ~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~ 88 (113)
T 2cpe_A 9 PDEDSDNSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAVEWFDGK 88 (113)
T ss_dssp CCCCCCCCEEEEECCCTTCCHHHHHHHHTTTSCBCBCSSSCCBSEECCBCTTTCSBCSEEEEEBSSHHHHHHHHHHHTTC
T ss_pred cccCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCEeEccccCccCEEEEEeCCCCCeeeEEEEEECCHHHHHHHHHHcCCC
Confidence 34566789999999999999999999999999998 69999997 9999999999999999999999999999
Q ss_pred ccCCceEEEEEeecCCC
Q 029496 85 QLDGKPMKIEIIGTNIG 101 (192)
Q Consensus 85 ~l~g~~i~V~~~~~~~~ 101 (192)
.|.|+.|+|+++.++..
T Consensus 89 ~~~g~~l~V~~a~~~~~ 105 (113)
T 2cpe_A 89 DFQGSKLKVSLARKKPP 105 (113)
T ss_dssp EETTEECEEECSSCCCC
T ss_pred ccCCCEEEEEECCCCCC
Confidence 99999999999987554
No 43
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=99.84 E-value=2.1e-20 Score=159.94 Aligned_cols=85 Identities=18% Similarity=0.377 Sum_probs=79.9
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHhhhCCCeEEEEEEeCC-CCCcceEEEEEEcCHHHHHHHHHHhCCCccCCceEEEEE
Q 029496 17 IESGTKLYISNLEYGVSNEDIKELFSEVGELKRCSVHFDR-SGRSKGTAEVVLTRRADAIAAVKRYNNVQLDGKPMKIEI 95 (192)
Q Consensus 17 ~~~~~~l~V~nL~~~~te~~L~~~f~~~G~i~~v~i~~~~-tg~~~g~afV~f~~~~~a~~Ai~~l~~~~l~g~~i~V~~ 95 (192)
..+.++|||+|||+.+|+++|+.+|.+||.|..|.|+.++ +++++|||||+|.+.++|++||+.||++.|.|+.|.|++
T Consensus 99 ~~~~~~lfV~nL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~i~gr~i~V~~ 178 (437)
T 3pgw_S 99 GDAFKTLFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDV 178 (437)
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEeeccCCCCCccceEEEeeccHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 3556899999999999999999999999999999999998 999999999999999999999999999999999999999
Q ss_pred eecCCC
Q 029496 96 IGTNIG 101 (192)
Q Consensus 96 ~~~~~~ 101 (192)
+.+...
T Consensus 179 a~~~~~ 184 (437)
T 3pgw_S 179 ERGRTV 184 (437)
T ss_pred eCCCCC
Confidence 986544
No 44
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=99.84 E-value=3.4e-21 Score=131.94 Aligned_cols=83 Identities=16% Similarity=0.244 Sum_probs=75.8
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHhhhCCC--eEEEEEEeCC-CCCcceEEEEEEcCHHHHHHHHHHhCCC----ccCC
Q 029496 16 SIESGTKLYISNLEYGVSNEDIKELFSEVGE--LKRCSVHFDR-SGRSKGTAEVVLTRRADAIAAVKRYNNV----QLDG 88 (192)
Q Consensus 16 ~~~~~~~l~V~nL~~~~te~~L~~~f~~~G~--i~~v~i~~~~-tg~~~g~afV~f~~~~~a~~Ai~~l~~~----~l~g 88 (192)
....-.+|||+|||+++|+++|+++|++||. |.+|+|+.|+ +++++|||||+|.+.++|++|++.|++. .|+|
T Consensus 5 ~~~~m~tlfV~nL~~~~tee~L~~~F~~~G~i~v~~v~i~~d~~tg~srG~aFV~f~~~~~A~~Ai~~lng~~~~~~i~G 84 (95)
T 2lkz_A 5 HHHHMDTIILRNIAPHTVVDSIMTALSPYASLAVNNIRLIKDKQTQQNRGFAFVQLSSAMDASQLLQILQSLHPPLKIDG 84 (95)
T ss_dssp SSCCCCEEEEESCCTTCCHHHHHHHSTTTCCCCGGGEECCCCSSSSSCSSEEEEECSSSHHHHHHHHHHHSSSSCEEETT
T ss_pred cCCccCEEEEeCCCCcCCHHHHHHHHHhhCCccEEEEEEEecCCCCCCceEeEEEECCHHHHHHHHHHhcCCCCCceECC
Confidence 3445579999999999999999999999995 6799999998 9999999999999999999999999987 4899
Q ss_pred ceEEEEEeec
Q 029496 89 KPMKIEIIGT 98 (192)
Q Consensus 89 ~~i~V~~~~~ 98 (192)
++|.|++++.
T Consensus 85 r~i~V~~Aks 94 (95)
T 2lkz_A 85 KTIGVDFAKS 94 (95)
T ss_dssp EEEEEEECCC
T ss_pred EEEEEEEccC
Confidence 9999999875
No 45
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.84 E-value=8.6e-21 Score=129.48 Aligned_cols=84 Identities=20% Similarity=0.294 Sum_probs=79.1
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHhhhCCCeEEE-EEEeCC-CCCcceEEEEEEcCHHHHHHHHHHhCCCccCCceEEEEE
Q 029496 18 ESGTKLYISNLEYGVSNEDIKELFSEVGELKRC-SVHFDR-SGRSKGTAEVVLTRRADAIAAVKRYNNVQLDGKPMKIEI 95 (192)
Q Consensus 18 ~~~~~l~V~nL~~~~te~~L~~~f~~~G~i~~v-~i~~~~-tg~~~g~afV~f~~~~~a~~Ai~~l~~~~l~g~~i~V~~ 95 (192)
.+.++|||+|||+++++++|+++|++||.|..+ .|+.++ ++.+++||||+|.+.++|++|++.|++..|+|+.|+|++
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 82 (96)
T 1x5t_A 3 SGSSGIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSY 82 (96)
T ss_dssp SCCCEEEEECCCTTCCHHHHHHHHHTTSCBSSCCEECCCTTTCSCCSEEEEEBSSHHHHHHHHHTTTTCEETTEECEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEEcCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 567899999999999999999999999999999 999997 999999999999999999999999999999999999999
Q ss_pred eecCCC
Q 029496 96 IGTNIG 101 (192)
Q Consensus 96 ~~~~~~ 101 (192)
+.++..
T Consensus 83 a~~~~~ 88 (96)
T 1x5t_A 83 AFKKDS 88 (96)
T ss_dssp SCCCCC
T ss_pred ecccCC
Confidence 986544
No 46
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=99.84 E-value=2.4e-20 Score=126.26 Aligned_cols=86 Identities=22% Similarity=0.419 Sum_probs=79.2
Q ss_pred CCCCCCCEEEEcCCCCCCCHHHHHHHhhhCCCeEEEEEEeCCCCCcceEEEEEEcCHHHHHHHHHHhCCCccCCceEEEE
Q 029496 15 SSIESGTKLYISNLEYGVSNEDIKELFSEVGELKRCSVHFDRSGRSKGTAEVVLTRRADAIAAVKRYNNVQLDGKPMKIE 94 (192)
Q Consensus 15 ~~~~~~~~l~V~nL~~~~te~~L~~~f~~~G~i~~v~i~~~~tg~~~g~afV~f~~~~~a~~Ai~~l~~~~l~g~~i~V~ 94 (192)
+...+.++|||+|||+++++++|+++|.+||.|..|.|+.+ ++++++||||+|.+.++|++|++.|++..|+|+.|+|+
T Consensus 3 ~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~-~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~ 81 (92)
T 2dgv_A 3 SGSSGACQIFVRNLPFDFTWKMLKDKFNECGHVLYADIKME-NGKSKGCGVVKFESPEVAERACRMMNGMKLSGREIDVR 81 (92)
T ss_dssp CSSSSCCEEEECSCCTTCCHHHHHHHHHTTSCEEEEEEEES-SSCEEEEEEEEESSHHHHHHHHHHHTTCCBTTBCCCCE
T ss_pred CCCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcc-CCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEE
Confidence 34567899999999999999999999999999999999875 78889999999999999999999999999999999999
Q ss_pred EeecCCC
Q 029496 95 IIGTNIG 101 (192)
Q Consensus 95 ~~~~~~~ 101 (192)
++++...
T Consensus 82 ~a~~~~~ 88 (92)
T 2dgv_A 82 IDRNASG 88 (92)
T ss_dssp ECSCCSS
T ss_pred EcCCCCC
Confidence 9987544
No 47
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=99.84 E-value=2.3e-20 Score=130.62 Aligned_cols=87 Identities=22% Similarity=0.487 Sum_probs=81.0
Q ss_pred CCCCCCCCEEEEcCCCCCCCHHHHHHHhhhCCCeEEEEEEeCC-CCCcceEEEEEEcCHHHHHHHHHHhCCCccCCceEE
Q 029496 14 SSSIESGTKLYISNLEYGVSNEDIKELFSEVGELKRCSVHFDR-SGRSKGTAEVVLTRRADAIAAVKRYNNVQLDGKPMK 92 (192)
Q Consensus 14 ~~~~~~~~~l~V~nL~~~~te~~L~~~f~~~G~i~~v~i~~~~-tg~~~g~afV~f~~~~~a~~Ai~~l~~~~l~g~~i~ 92 (192)
+....+.++|||+|||..+++++|+++|++||.|..|.|+.++ ++.++|||||+|.+.++|++|++.|++..|+|+.|+
T Consensus 20 ~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~ 99 (108)
T 2jrs_A 20 QKGSAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPMK 99 (108)
T ss_dssp CCSCSSCEEEEEECCCSSCCHHHHHHHHTTTSCEEEEEEEEETTTTEEEEEEEEEESCHHHHHHHHHHHTTCCSSSSCCE
T ss_pred ccCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEE
Confidence 3456677899999999999999999999999999999999998 899999999999999999999999999999999999
Q ss_pred EEEeecCC
Q 029496 93 IEIIGTNI 100 (192)
Q Consensus 93 V~~~~~~~ 100 (192)
|++++++.
T Consensus 100 V~~a~~k~ 107 (108)
T 2jrs_A 100 VGHVTERT 107 (108)
T ss_dssp EECSCSSC
T ss_pred EEEcccCC
Confidence 99987653
No 48
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.84 E-value=1.7e-20 Score=130.04 Aligned_cols=88 Identities=18% Similarity=0.311 Sum_probs=80.2
Q ss_pred ccCCCCCCCCEEEEcCCCCCCCHHHHHHHhhhCCCeEEEEEEeCC-C-CCcceEEEEEEcCHHHHHHHHHHhCCCccCCc
Q 029496 12 ARSSSIESGTKLYISNLEYGVSNEDIKELFSEVGELKRCSVHFDR-S-GRSKGTAEVVLTRRADAIAAVKRYNNVQLDGK 89 (192)
Q Consensus 12 ~~~~~~~~~~~l~V~nL~~~~te~~L~~~f~~~G~i~~v~i~~~~-t-g~~~g~afV~f~~~~~a~~Ai~~l~~~~l~g~ 89 (192)
..+.+..+.++|||+|||+++++++|+++|.+|| |..|.|+.++ + +++++||||+|.+.++|++|| .|++..|+|+
T Consensus 7 ~~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~ 84 (104)
T 1wi8_A 7 GSRLPKSPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNK 84 (104)
T ss_dssp CCCCCSSSCEEEEEESCCSSCCHHHHHHHTTTSC-EEEEECCBCSSCTTSBCSCEEEEESSHHHHHHHH-GGGTCEETTE
T ss_pred CCCCCCCCCCEEEEeCCCCcCCHHHHHHHHHHCC-ceEEEEecCCCCCCCcCeEEEEEECCHHHHHHHH-hcCCCEeCCc
Confidence 3344556779999999999999999999999999 9999999998 6 899999999999999999999 9999999999
Q ss_pred eEEEEEeecCCC
Q 029496 90 PMKIEIIGTNIG 101 (192)
Q Consensus 90 ~i~V~~~~~~~~ 101 (192)
.|.|+++.++..
T Consensus 85 ~l~V~~a~~~~~ 96 (104)
T 1wi8_A 85 RIRVDVADQAQD 96 (104)
T ss_dssp ECEEEECCCCCC
T ss_pred EEEEEEccCCCC
Confidence 999999987544
No 49
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.84 E-value=1.1e-20 Score=131.21 Aligned_cols=91 Identities=19% Similarity=0.311 Sum_probs=82.8
Q ss_pred cccCCCCCCCCEEEEcCCCCCCCHHHHHHHhhhCCCeEEEEEEeCC-CCCcceEEEEEEcCHHHHHHHHHHhCCCccCCc
Q 029496 11 AARSSSIESGTKLYISNLEYGVSNEDIKELFSEVGELKRCSVHFDR-SGRSKGTAEVVLTRRADAIAAVKRYNNVQLDGK 89 (192)
Q Consensus 11 ~~~~~~~~~~~~l~V~nL~~~~te~~L~~~f~~~G~i~~v~i~~~~-tg~~~g~afV~f~~~~~a~~Ai~~l~~~~l~g~ 89 (192)
........+.++|||+|||+++++++|+++|.+||.|..|.|+.++ ++.+++||||+|.+.++|++||+. ++..|+|+
T Consensus 7 ~~~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~a~~~-~~~~~~g~ 85 (105)
T 2dh8_A 7 GMNNSGADEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS-RPHTLDGR 85 (105)
T ss_dssp CCCCCCSSSSSEECCBSCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSTTHHHHHHHH-CSEEETTE
T ss_pred CCCcCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCCcceEEEEEECCHHHHHHHHHh-CCCeECCE
Confidence 3444567788999999999999999999999999999999999998 899999999999999999999998 99999999
Q ss_pred eEEEEEeecCCCC
Q 029496 90 PMKIEIIGTNIGP 102 (192)
Q Consensus 90 ~i~V~~~~~~~~~ 102 (192)
.|.|+++.++...
T Consensus 86 ~l~V~~a~~~~~~ 98 (105)
T 2dh8_A 86 NIDPKPCTPRGMQ 98 (105)
T ss_dssp EEBCCCSCCSSCC
T ss_pred EEEEEEccCCCCC
Confidence 9999998865543
No 50
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=99.84 E-value=4.1e-20 Score=132.10 Aligned_cols=93 Identities=49% Similarity=0.870 Sum_probs=85.2
Q ss_pred ccCCCCCCCCEEEEcCCCCCCCHHHHHHHhhhCCCeEEEEEEeCCCCCcceEEEEEEcCHHHHHHHHHHhCCCccCCceE
Q 029496 12 ARSSSIESGTKLYISNLEYGVSNEDIKELFSEVGELKRCSVHFDRSGRSKGTAEVVLTRRADAIAAVKRYNNVQLDGKPM 91 (192)
Q Consensus 12 ~~~~~~~~~~~l~V~nL~~~~te~~L~~~f~~~G~i~~v~i~~~~tg~~~g~afV~f~~~~~a~~Ai~~l~~~~l~g~~i 91 (192)
.+.+...+.++|||+|||+.+++++|+++|.+||.|..|.|+.++++++++||||+|.+.++|++|++.|++..|+|+.|
T Consensus 27 ~~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l 106 (124)
T 2kt5_A 27 GGGEGVETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDRSGRSLGTADVHFERRADALKAMKQYKGVPLDGRPM 106 (124)
T ss_dssp CCCCCCSSCEEEEEESCCSSCCHHHHHHHHHTTSCCSEEEEECCSSSSCCSEEEEEESSHHHHHHHHHHHTTEESSSCEE
T ss_pred CCCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCEeeEEEEEECCHHHHHHHHHHcCCCEECCcEE
Confidence 33456678899999999999999999999999999999999999888999999999999999999999999999999999
Q ss_pred EEEEeecCCCCCC
Q 029496 92 KIEIIGTNIGPPA 104 (192)
Q Consensus 92 ~V~~~~~~~~~~~ 104 (192)
+|+++.......+
T Consensus 107 ~V~~a~~~~~~~~ 119 (124)
T 2kt5_A 107 DIQLVASQIDLEH 119 (124)
T ss_dssp EEEEECCTTCCCC
T ss_pred EEEEeCCCCCCCC
Confidence 9999988666544
No 51
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=99.84 E-value=1.2e-20 Score=133.56 Aligned_cols=83 Identities=23% Similarity=0.314 Sum_probs=77.4
Q ss_pred CCCCCCCEEEEcCCCCCCCHHHHHHHhhhCCCeEEEEEEeCC-CCCcceEEEEEEcCHHHHHHHHHHhCCCccCCceEEE
Q 029496 15 SSIESGTKLYISNLEYGVSNEDIKELFSEVGELKRCSVHFDR-SGRSKGTAEVVLTRRADAIAAVKRYNNVQLDGKPMKI 93 (192)
Q Consensus 15 ~~~~~~~~l~V~nL~~~~te~~L~~~f~~~G~i~~v~i~~~~-tg~~~g~afV~f~~~~~a~~Ai~~l~~~~l~g~~i~V 93 (192)
....+.++|||+|||+++++++|+++|++||.|..|.|+.++ ++++++||||+|.+.++|++|++.|++..|+|+.|+|
T Consensus 35 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V 114 (118)
T 2khc_A 35 IEGPEGCNLFIYHLPQEFTDTDLASTFLPFGNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIKAMNGFQVGTKRLKV 114 (118)
T ss_dssp CCCCCSEEEEEECSCTTCCHHHHHHHTTTSCEEEEEEECCCSSSSCCCCEEEEEEESSHHHHHHHHHCCCCEETTEECCE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCcCcEEEEEECCHHHHHHHHHHcCCCEECCEEEEE
Confidence 345567899999999999999999999999999999999998 8999999999999999999999999999999999999
Q ss_pred EEee
Q 029496 94 EIIG 97 (192)
Q Consensus 94 ~~~~ 97 (192)
++++
T Consensus 115 ~~ak 118 (118)
T 2khc_A 115 QLKK 118 (118)
T ss_dssp EEC-
T ss_pred EecC
Confidence 9874
No 52
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=99.84 E-value=1.3e-20 Score=136.04 Aligned_cols=88 Identities=27% Similarity=0.409 Sum_probs=81.8
Q ss_pred cCCCCCCCCEEEEcCCCCCCCHHHHHHHhhhCCCeEEEEEEeCC-CCCcceEEEEEEcCHHHHHHHHHHhCCCccCCceE
Q 029496 13 RSSSIESGTKLYISNLEYGVSNEDIKELFSEVGELKRCSVHFDR-SGRSKGTAEVVLTRRADAIAAVKRYNNVQLDGKPM 91 (192)
Q Consensus 13 ~~~~~~~~~~l~V~nL~~~~te~~L~~~f~~~G~i~~v~i~~~~-tg~~~g~afV~f~~~~~a~~Ai~~l~~~~l~g~~i 91 (192)
......+.++|||+|||+++++++|+++|.+||.|..|.|+.++ ++++++||||+|.+.++|++||+.|++..|+|+.|
T Consensus 39 ~~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~lng~~i~g~~l 118 (129)
T 2kxn_B 39 NRANPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRI 118 (129)
T ss_dssp CSSCCCCSSCBCEETCTTSCCHHHHHHHHTTTSCEEEEEEECCSSSSCCCCEEEEEESCHHHHHHHHHHHTTCCSSSSCC
T ss_pred CCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCEEE
Confidence 34566778899999999999999999999999999999999998 89999999999999999999999999999999999
Q ss_pred EEEEeecCC
Q 029496 92 KIEIIGTNI 100 (192)
Q Consensus 92 ~V~~~~~~~ 100 (192)
.|+++.++.
T Consensus 119 ~V~~a~~~~ 127 (129)
T 2kxn_B 119 RVDFSITKR 127 (129)
T ss_dssp EESCCSSSS
T ss_pred EEEEecCCC
Confidence 999997644
No 53
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=99.84 E-value=2e-20 Score=127.91 Aligned_cols=83 Identities=27% Similarity=0.384 Sum_probs=78.6
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHhhhCCCeEEEEEEeCC-CCCcceEEEEEEcCHHHHHHHHHHhCCCccCCceEEEEEee
Q 029496 19 SGTKLYISNLEYGVSNEDIKELFSEVGELKRCSVHFDR-SGRSKGTAEVVLTRRADAIAAVKRYNNVQLDGKPMKIEIIG 97 (192)
Q Consensus 19 ~~~~l~V~nL~~~~te~~L~~~f~~~G~i~~v~i~~~~-tg~~~g~afV~f~~~~~a~~Ai~~l~~~~l~g~~i~V~~~~ 97 (192)
++++|||+|||.++++++|+++|++||.|..|.|+.++ ++.+++||||+|.+.++|++|++.|++..|+|+.|.|+++.
T Consensus 1 P~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 80 (96)
T 2x1f_A 1 PSRVVYLGSIPYDQTEEQILDLCSNVGPVINLKMMFDPQTGRSKGYAFIEFRDLESSASAVRNLNGYQLGSRFLKCGYSS 80 (96)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTCCBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECS
T ss_pred CCcEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEcC
Confidence 46899999999999999999999999999999999998 89999999999999999999999999999999999999998
Q ss_pred cCCC
Q 029496 98 TNIG 101 (192)
Q Consensus 98 ~~~~ 101 (192)
++..
T Consensus 81 ~~~~ 84 (96)
T 2x1f_A 81 NSDI 84 (96)
T ss_dssp CSSG
T ss_pred CCCC
Confidence 7544
No 54
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.84 E-value=5e-20 Score=128.70 Aligned_cols=82 Identities=24% Similarity=0.354 Sum_probs=74.8
Q ss_pred cCCCCCCCCEEEEcCCCCCCCHHHHHHHhhhCCCeEEEEEEeCCCCCcceEEEEEEcCHHHHHHHHHHhCCCccCC----
Q 029496 13 RSSSIESGTKLYISNLEYGVSNEDIKELFSEVGELKRCSVHFDRSGRSKGTAEVVLTRRADAIAAVKRYNNVQLDG---- 88 (192)
Q Consensus 13 ~~~~~~~~~~l~V~nL~~~~te~~L~~~f~~~G~i~~v~i~~~~tg~~~g~afV~f~~~~~a~~Ai~~l~~~~l~g---- 88 (192)
.+++....++|||+|||+++++++|+++|.+||.|..|.|+.+ +||||+|.+.++|++||+.|++..|++
T Consensus 8 ~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~i~~~------g~afV~f~~~~~a~~Ai~~l~g~~~~g~~~~ 81 (108)
T 1x4c_A 8 GPPSRRSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD------GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGE 81 (108)
T ss_dssp SCCCCSCCCEEEEESCCSSCCHHHHHHHHGGGSCEEEEEEETT------TEEEEEESSHHHHHHHHHHSSSEEEECTTSC
T ss_pred CCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEecC------CEEEEEECCHHHHHHHHHHHCcCCccCCcCc
Confidence 3455677899999999999999999999999999999999865 799999999999999999999999999
Q ss_pred -ceEEEEEeecCC
Q 029496 89 -KPMKIEIIGTNI 100 (192)
Q Consensus 89 -~~i~V~~~~~~~ 100 (192)
+.|+|+++.++.
T Consensus 82 ~~~i~V~~a~~~~ 94 (108)
T 1x4c_A 82 TAYIRVKVDGPRS 94 (108)
T ss_dssp EEEEEEEESSCCS
T ss_pred ceEEEEEeCCCCC
Confidence 999999998743
No 55
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=99.84 E-value=1.8e-20 Score=132.45 Aligned_cols=82 Identities=22% Similarity=0.388 Sum_probs=74.8
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHhhhCCCeEEEEEEeCCCCCcceEEEEEEcCHHHHHHHHHHhCCCccCCceEEEEEeec
Q 029496 19 SGTKLYISNLEYGVSNEDIKELFSEVGELKRCSVHFDRSGRSKGTAEVVLTRRADAIAAVKRYNNVQLDGKPMKIEIIGT 98 (192)
Q Consensus 19 ~~~~l~V~nL~~~~te~~L~~~f~~~G~i~~v~i~~~~tg~~~g~afV~f~~~~~a~~Ai~~l~~~~l~g~~i~V~~~~~ 98 (192)
..++|||+|||+++++++|+++|++||.|.+|.|+.++. .++|||||+|.+.++|++||+.|++..|+|+.|.|+++.+
T Consensus 4 ~~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~i~~d~~-~~kg~afV~f~~~~~A~~Ai~~l~~~~~~g~~i~V~~a~~ 82 (115)
T 4f25_A 4 GSGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDEN-GSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKS 82 (115)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETT-EEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEESSC
T ss_pred CCCEEEECCCCCCCCHHHHHHHHhccCCEEEEEEeecCC-CCCceEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCC
Confidence 356899999999999999999999999999999998863 3799999999999999999999999999999999999876
Q ss_pred CCC
Q 029496 99 NIG 101 (192)
Q Consensus 99 ~~~ 101 (192)
+..
T Consensus 83 ~~~ 85 (115)
T 4f25_A 83 RKE 85 (115)
T ss_dssp CCC
T ss_pred ccc
Confidence 443
No 56
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.84 E-value=2.1e-20 Score=127.96 Aligned_cols=85 Identities=22% Similarity=0.365 Sum_probs=77.5
Q ss_pred CCCCCCCEEEEcCCCCCCCHHHHH----HHhhhCCCeEEEEEEeCCCCCcceEEEEEEcCHHHHHHHHHHhCCCccCCce
Q 029496 15 SSIESGTKLYISNLEYGVSNEDIK----ELFSEVGELKRCSVHFDRSGRSKGTAEVVLTRRADAIAAVKRYNNVQLDGKP 90 (192)
Q Consensus 15 ~~~~~~~~l~V~nL~~~~te~~L~----~~f~~~G~i~~v~i~~~~tg~~~g~afV~f~~~~~a~~Ai~~l~~~~l~g~~ 90 (192)
.+..+.++|||+|||+++++++|+ ++|++||.|.+|.|+.++.. ++||||+|.+.++|++|++.||+..|+|+.
T Consensus 4 ~~~~~~~~l~V~nL~~~~~~~~l~~~l~~~F~~~G~v~~v~i~~~~~~--rg~afV~f~~~~~A~~Ai~~l~g~~~~gr~ 81 (96)
T 2dgx_A 4 GSSGNGADVQVSNIDYRLSRKELQQLLQEAFARHGKVKSVELSPHTDY--QLKAVVQMENLQDAIGAVNSLHRYKIGSKK 81 (96)
T ss_dssp CCCSSCEEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECSCCST--TCCEEEEESSHHHHHHHHHHHTTEEETTEE
T ss_pred CCCCCCCEEEEECCCCCCCHHHHHHHHHHhccccCcEEEEEEEeCCCC--CeEEEEEECCHHHHHHHHHHhCCCEECCeE
Confidence 455677899999999999999999 99999999999999988843 889999999999999999999999999999
Q ss_pred EEEEEeecCCC
Q 029496 91 MKIEIIGTNIG 101 (192)
Q Consensus 91 i~V~~~~~~~~ 101 (192)
|+|+++++...
T Consensus 82 l~V~~a~~~~~ 92 (96)
T 2dgx_A 82 ILVSLATGASG 92 (96)
T ss_dssp EEEEECCCSSC
T ss_pred EEEEEcCCCCC
Confidence 99999976543
No 57
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.83 E-value=9.6e-21 Score=129.79 Aligned_cols=84 Identities=21% Similarity=0.263 Sum_probs=77.6
Q ss_pred CCCCCCCEEEEcCCCCCCCHHHHHHHhhhCCCeEEEEEEeCC-CCCcceEEEEEEcCHHHHHHHHHHhCCCccCCceEEE
Q 029496 15 SSIESGTKLYISNLEYGVSNEDIKELFSEVGELKRCSVHFDR-SGRSKGTAEVVLTRRADAIAAVKRYNNVQLDGKPMKI 93 (192)
Q Consensus 15 ~~~~~~~~l~V~nL~~~~te~~L~~~f~~~G~i~~v~i~~~~-tg~~~g~afV~f~~~~~a~~Ai~~l~~~~l~g~~i~V 93 (192)
+.....++|||+|||+++++++|+++|.+||.|..+.++.++ ++++++||||+|.+.++|++|++.|++..|+|+.|+|
T Consensus 10 ~~~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V 89 (98)
T 2cqp_A 10 SGKPGPTIIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKL 89 (98)
T ss_dssp CCCCSSEEEEEESCCTTCCHHHHHHHTTTSCCCTTTCEEEECSSSCEEEEEEEEESCHHHHHHHHHHTTTCEETTEECEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHHcCCccceEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCeeCCeEEEE
Confidence 345667899999999999999999999999999888777777 8999999999999999999999999999999999999
Q ss_pred EEeec
Q 029496 94 EIIGT 98 (192)
Q Consensus 94 ~~~~~ 98 (192)
+++..
T Consensus 90 ~~a~~ 94 (98)
T 2cqp_A 90 VLGSG 94 (98)
T ss_dssp EESSC
T ss_pred EEcCC
Confidence 99865
No 58
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.83 E-value=6.5e-20 Score=128.12 Aligned_cols=89 Identities=20% Similarity=0.315 Sum_probs=78.8
Q ss_pred cccCCCCCCCCEEEEcCCCCCCCHHHHHHHhhhCCCeEEEEEEeCCCCCcceEEEEEEcCHHHHHHHHHHhCCCccCCce
Q 029496 11 AARSSSIESGTKLYISNLEYGVSNEDIKELFSEVGELKRCSVHFDRSGRSKGTAEVVLTRRADAIAAVKRYNNVQLDGKP 90 (192)
Q Consensus 11 ~~~~~~~~~~~~l~V~nL~~~~te~~L~~~f~~~G~i~~v~i~~~~tg~~~g~afV~f~~~~~a~~Ai~~l~~~~l~g~~ 90 (192)
........+.++|||+|||+++++++|+++|.+||.|..|.|..+ +.+++||||+|.+.++|++||+.|++..|+++.
T Consensus 13 ~~~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~--~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~ 90 (109)
T 1x4a_A 13 VIRGPAGNNDCRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNR--RGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYR 90 (109)
T ss_dssp CSSCCCCCCSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEECCS--SSSSCCEEEEESCHHHHHHHHHHHTTCEETTEE
T ss_pred CCCCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEC--CCCCcEEEEEECCHHHHHHHHHHcCCCEECCeE
Confidence 344556667899999999999999999999999999999998544 557899999999999999999999999999999
Q ss_pred EEEEEeecCCC
Q 029496 91 MKIEIIGTNIG 101 (192)
Q Consensus 91 i~V~~~~~~~~ 101 (192)
|+|+++++...
T Consensus 91 l~V~~a~~~~~ 101 (109)
T 1x4a_A 91 LRVEFPRSGRG 101 (109)
T ss_dssp CEEECCCCCCC
T ss_pred EEEEEcccCCC
Confidence 99999976443
No 59
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=99.83 E-value=2.3e-20 Score=130.58 Aligned_cols=87 Identities=24% Similarity=0.392 Sum_probs=80.9
Q ss_pred CCCCCCCCEEEEcCCCCCCCHHHHHHHhhhCCCeEEEEEEeCC-CCCcceEEEEEEcCHHHHHHHHHHhCCCccCCceEE
Q 029496 14 SSSIESGTKLYISNLEYGVSNEDIKELFSEVGELKRCSVHFDR-SGRSKGTAEVVLTRRADAIAAVKRYNNVQLDGKPMK 92 (192)
Q Consensus 14 ~~~~~~~~~l~V~nL~~~~te~~L~~~f~~~G~i~~v~i~~~~-tg~~~g~afV~f~~~~~a~~Ai~~l~~~~l~g~~i~ 92 (192)
+....+.++|||+|||+++++++|+++|++||.|..|.|+.++ ++.+++||||+|.+.++|++|+..|++..|+|+.|.
T Consensus 20 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~ 99 (110)
T 1oo0_B 20 PQRSVEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQ 99 (110)
T ss_dssp BCCBTTBEEEEEESCCTTCCHHHHHHHHGGGSCEEEEECCBCTTTSSBCSEEEEEESSHHHHHHHHHHHTTCEETTEECE
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCcEEE
Confidence 3455677899999999999999999999999999999999998 899999999999999999999999999999999999
Q ss_pred EEEeecCC
Q 029496 93 IEIIGTNI 100 (192)
Q Consensus 93 V~~~~~~~ 100 (192)
|+++.++.
T Consensus 100 V~~a~~~~ 107 (110)
T 1oo0_B 100 VDWCFVKG 107 (110)
T ss_dssp EEESEESS
T ss_pred EEEcccCC
Confidence 99998744
No 60
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.83 E-value=8.4e-20 Score=126.25 Aligned_cols=89 Identities=21% Similarity=0.340 Sum_probs=80.5
Q ss_pred ccCCCCCCCCEEEEcCCCCCCCHHHHHHHhhhCCCeEEEEEEeCC-CCCcceEEEEEEcCHHHHHHHHHHhCCCccCCce
Q 029496 12 ARSSSIESGTKLYISNLEYGVSNEDIKELFSEVGELKRCSVHFDR-SGRSKGTAEVVLTRRADAIAAVKRYNNVQLDGKP 90 (192)
Q Consensus 12 ~~~~~~~~~~~l~V~nL~~~~te~~L~~~f~~~G~i~~v~i~~~~-tg~~~g~afV~f~~~~~a~~Ai~~l~~~~l~g~~ 90 (192)
.......+.++|||+|||+++++++|+++|.+||.|..|.|+.++ ++++++||||+|.+.++|++||+ +++.|+|+.
T Consensus 7 ~~~~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~--~~~~~~g~~ 84 (103)
T 2cqg_A 7 GVKRAVQKTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMS--QRHMIDGRW 84 (103)
T ss_dssp SCSCCCCCCCCEEEESCCSSCCHHHHHHHHGGGSCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHH--SCEEETTEE
T ss_pred CCCCccCCCCEEEEEcCCCcCCHHHHHHHHHhcCCeEEEEEEecCCCCCccceEEEEECCHHHHHHHHH--cCCeeCCeE
Confidence 344566778899999999999999999999999999999999998 89999999999999999999998 467899999
Q ss_pred EEEEEeecCCCC
Q 029496 91 MKIEIIGTNIGP 102 (192)
Q Consensus 91 i~V~~~~~~~~~ 102 (192)
|.|+++.++...
T Consensus 85 l~v~~a~~~~~~ 96 (103)
T 2cqg_A 85 CDCKLPNSKQSQ 96 (103)
T ss_dssp EEEECCCTTCCC
T ss_pred EEEEecCCCCcC
Confidence 999999876553
No 61
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.83 E-value=3.3e-20 Score=127.07 Aligned_cols=85 Identities=27% Similarity=0.513 Sum_probs=78.0
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHhhhCCCeEEEEEEeCCC--C--CcceEEEEEEcCHHHHHHHHHHhCCCccCCceEEE
Q 029496 18 ESGTKLYISNLEYGVSNEDIKELFSEVGELKRCSVHFDRS--G--RSKGTAEVVLTRRADAIAAVKRYNNVQLDGKPMKI 93 (192)
Q Consensus 18 ~~~~~l~V~nL~~~~te~~L~~~f~~~G~i~~v~i~~~~t--g--~~~g~afV~f~~~~~a~~Ai~~l~~~~l~g~~i~V 93 (192)
.+.++|||+|||+++++++|+++|++||.|..|.|+.++. + .+++||||+|.+.++|++|++.|++..|+|+.|.|
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~gt~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V 82 (98)
T 2cpf_A 3 SGSSGLFIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQGHTVDGHKLEV 82 (98)
T ss_dssp CCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEEECTTCCEEEEEEEEEEESSHHHHHHHHHHSTTCEETTEECEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCcCcccEEEEEECCHHHHHHHHHHhCCCeeCCeEEEE
Confidence 5678999999999999999999999999999999998763 3 78999999999999999999999999999999999
Q ss_pred EEeecCCCC
Q 029496 94 EIIGTNIGP 102 (192)
Q Consensus 94 ~~~~~~~~~ 102 (192)
+++.+....
T Consensus 83 ~~a~~~~~~ 91 (98)
T 2cpf_A 83 RISERATKP 91 (98)
T ss_dssp ECSSCSSCC
T ss_pred EEccCCCCC
Confidence 999875544
No 62
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.83 E-value=5.1e-20 Score=124.55 Aligned_cols=83 Identities=13% Similarity=0.197 Sum_probs=78.3
Q ss_pred CCCCCCCEEEEcCCCCCCCHHHHHHHhhhCCCeEEEEEEeCCCCCcceEEEEEEcCHHHHHHHHHHhCCCccCCceEEEE
Q 029496 15 SSIESGTKLYISNLEYGVSNEDIKELFSEVGELKRCSVHFDRSGRSKGTAEVVLTRRADAIAAVKRYNNVQLDGKPMKIE 94 (192)
Q Consensus 15 ~~~~~~~~l~V~nL~~~~te~~L~~~f~~~G~i~~v~i~~~~tg~~~g~afV~f~~~~~a~~Ai~~l~~~~l~g~~i~V~ 94 (192)
+.....++|||+|||+++++++|+++|.+| .|..|.|+.+.+++++|||||+|.+.++|++|++ |++..|+|+.|.|.
T Consensus 5 ~~~~~~~~l~v~nLp~~~t~~~l~~~F~~~-~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~-~~g~~~~gr~i~v~ 82 (91)
T 2dgw_A 5 SSGTTCHTVKLRGAPFNVTEKNVMEFLAPL-KPVAIRIVRNAHGNKTGYIFVDFSNEEEVKQALK-CNREYMGGRYIEVF 82 (91)
T ss_dssp CCCCCCCEEEEECCCSSCCHHHHHHHHTTS-CCSEEEEEECTTSCEEEEEEEECSSHHHHHHHHH-SCSEEETTEEEEEE
T ss_pred CCCCCccEEEEECCCCCCCHHHHHHHHhhC-CceEEEEEECCCCCCceEEEEEECCHHHHHHHHH-hCCceeCCcEEEEE
Confidence 455678999999999999999999999999 9999999999889999999999999999999999 99999999999999
Q ss_pred EeecC
Q 029496 95 IIGTN 99 (192)
Q Consensus 95 ~~~~~ 99 (192)
++.+.
T Consensus 83 ~a~~~ 87 (91)
T 2dgw_A 83 REKSG 87 (91)
T ss_dssp EESSC
T ss_pred ECCcC
Confidence 99765
No 63
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=99.83 E-value=2.4e-20 Score=125.04 Aligned_cols=83 Identities=28% Similarity=0.362 Sum_probs=76.5
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHhhhCCCeEEEEEEeCC-CCC-cceEEEEEEcCHHHHHHHHHHhCCCccCCceEEEEE
Q 029496 18 ESGTKLYISNLEYGVSNEDIKELFSEVGELKRCSVHFDR-SGR-SKGTAEVVLTRRADAIAAVKRYNNVQLDGKPMKIEI 95 (192)
Q Consensus 18 ~~~~~l~V~nL~~~~te~~L~~~f~~~G~i~~v~i~~~~-tg~-~~g~afV~f~~~~~a~~Ai~~l~~~~l~g~~i~V~~ 95 (192)
...++|||+|||+++++++|+++|++||.|..+.|+.++ ++. +++||||+|.+.++|++|++.|++..|+|+.|+|++
T Consensus 2 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 81 (88)
T 4a8x_A 2 MKPTKVHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQIDGQEITATA 81 (88)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTEEEEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEeCCCCCCCCCcEEEEEEecHHHHHHHHHHcCCCeECCeEEEEEE
Confidence 356899999999999999999999999999999999887 444 899999999999999999999999999999999999
Q ss_pred eecCC
Q 029496 96 IGTNI 100 (192)
Q Consensus 96 ~~~~~ 100 (192)
+.+..
T Consensus 82 a~~~~ 86 (88)
T 4a8x_A 82 VLAPW 86 (88)
T ss_dssp ECCCC
T ss_pred CCCCC
Confidence 97643
No 64
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=99.83 E-value=3e-20 Score=138.27 Aligned_cols=80 Identities=16% Similarity=0.347 Sum_probs=75.9
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHhhhCC--CeEEEEEEeCC-CCCcceEEEEEEcCHHHHHHHHHHhCCCccCCceEEEEE
Q 029496 19 SGTKLYISNLEYGVSNEDIKELFSEVG--ELKRCSVHFDR-SGRSKGTAEVVLTRRADAIAAVKRYNNVQLDGKPMKIEI 95 (192)
Q Consensus 19 ~~~~l~V~nL~~~~te~~L~~~f~~~G--~i~~v~i~~~~-tg~~~g~afV~f~~~~~a~~Ai~~l~~~~l~g~~i~V~~ 95 (192)
+.++|||+|||+++++++|+++|.+|| .|..|.|+.|+ +++++|||||+|.+.++|++||+.|++..|+|+.|.|++
T Consensus 54 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~v~~v~i~~d~~tg~skGfaFV~f~~~~~A~~Ai~~lng~~~~Gr~l~V~~ 133 (156)
T 3n9u_C 54 RRAAVYVGSFSWWTTDQQLIQVIRSIGVYDVVELKFAENRANGQSKGYAEVVVASENSVHKLLELLPGKVLNGEKVDVRP 133 (156)
T ss_dssp --CEEEEECCCTTCCHHHHHHHHHHTTCCCEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHSTTCEETTEECEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHCCccEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEeEEEE
Confidence 457999999999999999999999999 99999999998 999999999999999999999999999999999999999
Q ss_pred eec
Q 029496 96 IGT 98 (192)
Q Consensus 96 ~~~ 98 (192)
+.+
T Consensus 134 a~~ 136 (156)
T 3n9u_C 134 ATR 136 (156)
T ss_dssp CCH
T ss_pred cCC
Confidence 865
No 65
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=99.83 E-value=8.8e-21 Score=129.19 Aligned_cols=84 Identities=21% Similarity=0.262 Sum_probs=74.3
Q ss_pred CCCCCCCEEEEcCCCCCCCHHHHHHHhhhCCCeEEEEEEeCC-CCCcceEEEEEEcCHHHHHHHHHHhCCCccCCceEEE
Q 029496 15 SSIESGTKLYISNLEYGVSNEDIKELFSEVGELKRCSVHFDR-SGRSKGTAEVVLTRRADAIAAVKRYNNVQLDGKPMKI 93 (192)
Q Consensus 15 ~~~~~~~~l~V~nL~~~~te~~L~~~f~~~G~i~~v~i~~~~-tg~~~g~afV~f~~~~~a~~Ai~~l~~~~l~g~~i~V 93 (192)
......++|||+|||+++++++|+++|.+||.|..+.++.++ ++++++||||+|.+.++|++|++.|++..|+|+.|+|
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~gr~l~v 89 (95)
T 2ek1_A 10 SGKPGPTVIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKL 89 (95)
T ss_dssp -----CEEEEEECCCTTCCHHHHHHHTTTSCBCTTCCEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEeCCCCCEeeEEEEEECCHHHHHHHHHHhCCCeECCcEEEE
Confidence 344456899999999999999999999999999888888877 8999999999999999999999999999999999999
Q ss_pred EEeec
Q 029496 94 EIIGT 98 (192)
Q Consensus 94 ~~~~~ 98 (192)
+++..
T Consensus 90 ~~a~s 94 (95)
T 2ek1_A 90 SGPSS 94 (95)
T ss_dssp ECCC-
T ss_pred EeccC
Confidence 98753
No 66
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.83 E-value=5.9e-20 Score=127.28 Aligned_cols=83 Identities=23% Similarity=0.389 Sum_probs=76.1
Q ss_pred CCCCCCCCEEEEcCCCCCCCHHHHHHHhhhCCCeEEEEEEeCCCCCcceEEEEEEcCHHHHHHHHHHhCCCccCCceEEE
Q 029496 14 SSSIESGTKLYISNLEYGVSNEDIKELFSEVGELKRCSVHFDRSGRSKGTAEVVLTRRADAIAAVKRYNNVQLDGKPMKI 93 (192)
Q Consensus 14 ~~~~~~~~~l~V~nL~~~~te~~L~~~f~~~G~i~~v~i~~~~tg~~~g~afV~f~~~~~a~~Ai~~l~~~~l~g~~i~V 93 (192)
.......++|||+|||+++|+++|+++|.+||. ..|.|+.+++++++|||||+|.+.++|++|| .+++..|+++.|+|
T Consensus 9 ~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~-~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al-~~~~~~~~gr~i~V 86 (102)
T 1wez_A 9 SFQSTTGHCVHMRGLPYRATENDIYNFFSPLNP-MRVHIEIGPDGRVTGEADVEFATHEDAVAAM-AKDKANMQHRYVEL 86 (102)
T ss_dssp SCCCSSSCEEEEESCCTTCCHHHHHHSSCSCCC-SEEEEEESSSSCEEEEEEEECSSSHHHHHHH-TTSSCCSSSSCCEE
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHHcCc-eEEEEEECCCCCEeeEEEEEECCHHHHHHHH-HhCCCeECCcEEEE
Confidence 445667789999999999999999999999994 5999999999999999999999999999999 47999999999999
Q ss_pred EEeec
Q 029496 94 EIIGT 98 (192)
Q Consensus 94 ~~~~~ 98 (192)
.++.+
T Consensus 87 ~~~~~ 91 (102)
T 1wez_A 87 FLNST 91 (102)
T ss_dssp EEECC
T ss_pred EECCC
Confidence 98864
No 67
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=99.83 E-value=7.9e-21 Score=131.13 Aligned_cols=81 Identities=20% Similarity=0.276 Sum_probs=77.0
Q ss_pred CCCCEEEEcCCCC------CCCHHHHHHHhhhCCCeEEEEEEeCC-CCCcceEEEEEEcCHHHHHHHHHHhCCCccCC-c
Q 029496 18 ESGTKLYISNLEY------GVSNEDIKELFSEVGELKRCSVHFDR-SGRSKGTAEVVLTRRADAIAAVKRYNNVQLDG-K 89 (192)
Q Consensus 18 ~~~~~l~V~nL~~------~~te~~L~~~f~~~G~i~~v~i~~~~-tg~~~g~afV~f~~~~~a~~Ai~~l~~~~l~g-~ 89 (192)
...++|||+|||. ++++++|+++|++||.|.+|.|+.++ |++++|||||+|.+.++|++||+.|++..|.| +
T Consensus 4 ~~~~~vfV~nLp~v~~~~~~~~~~~L~~~F~~~G~i~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~g~r 83 (100)
T 3ns6_A 4 GSDQYIVVNGAPVIPSAKVPVLKKALTSLFSKAGKVVNMEFPIDEATGKTKGFLFVECGSMNDAKKIIKSFHGKRLDLKH 83 (100)
T ss_dssp CGGGEEEEESCCCCBGGGHHHHHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCBSSSSC
T ss_pred CcCcEEEEeCCCcCChHHHHHHHHHHHHHHHhcCCEeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHhCCcccCCCe
Confidence 3467999999999 99999999999999999999999999 89999999999999999999999999999999 9
Q ss_pred eEEEEEeec
Q 029496 90 PMKIEIIGT 98 (192)
Q Consensus 90 ~i~V~~~~~ 98 (192)
.|+|.++.+
T Consensus 84 ~l~V~~a~~ 92 (100)
T 3ns6_A 84 RLFLYTMKD 92 (100)
T ss_dssp BCEEEESHH
T ss_pred EEEEEECch
Confidence 999999865
No 68
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=99.82 E-value=6.1e-20 Score=123.43 Aligned_cols=79 Identities=23% Similarity=0.505 Sum_probs=75.7
Q ss_pred CCEEEEcCCCCCCCHHHHHHHhhhCCCeEEEEEEeCC-CCCcceEEEEEEcCHHHHHHHHHHhCCCccCCceEEEEEeec
Q 029496 20 GTKLYISNLEYGVSNEDIKELFSEVGELKRCSVHFDR-SGRSKGTAEVVLTRRADAIAAVKRYNNVQLDGKPMKIEIIGT 98 (192)
Q Consensus 20 ~~~l~V~nL~~~~te~~L~~~f~~~G~i~~v~i~~~~-tg~~~g~afV~f~~~~~a~~Ai~~l~~~~l~g~~i~V~~~~~ 98 (192)
.++|||+|||+++++++|+++|++||.|..+.++.++ ++++++||||+|.+.++|++|+ .|++..|+|+.|+|+++++
T Consensus 6 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~-~~~g~~~~g~~l~V~~a~~ 84 (89)
T 3ucg_A 6 ARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSL-ALDESLFRGRQIKVIPKRT 84 (89)
T ss_dssp HTEEEEESCCTTCCHHHHHHHHGGGCCEEEEEEEESCSSSSCCEEEEEEESSTHHHHHHG-GGTTCEETTEECEEEETTT
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHH-hcCCCEECCcEEEEEEccC
Confidence 5799999999999999999999999999999999998 9999999999999999999999 9999999999999999876
Q ss_pred C
Q 029496 99 N 99 (192)
Q Consensus 99 ~ 99 (192)
+
T Consensus 85 ~ 85 (89)
T 3ucg_A 85 N 85 (89)
T ss_dssp T
T ss_pred C
Confidence 3
No 69
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=99.82 E-value=7.6e-20 Score=122.60 Aligned_cols=81 Identities=23% Similarity=0.520 Sum_probs=74.8
Q ss_pred CCCCCCCEEEEcCCCCCCCHHHHHHHhhhCCCeEEEEEEeCC-CCCcceEEEEEEcCHHHHHHHHHHhCCCccCCceEEE
Q 029496 15 SSIESGTKLYISNLEYGVSNEDIKELFSEVGELKRCSVHFDR-SGRSKGTAEVVLTRRADAIAAVKRYNNVQLDGKPMKI 93 (192)
Q Consensus 15 ~~~~~~~~l~V~nL~~~~te~~L~~~f~~~G~i~~v~i~~~~-tg~~~g~afV~f~~~~~a~~Ai~~l~~~~l~g~~i~V 93 (192)
....+.++|||+|||+++++++|+++|++||.|..+.|+.++ +++++|||||+|.+.++|++|++ +++..|+|+.|.|
T Consensus 6 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~i~v 84 (87)
T 3s7r_A 6 KNEEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLD-QKEHRLDGRVIDP 84 (87)
T ss_dssp -CCSCTTEEEEECCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSTHHHHHHHH-SSCEEETTEEEEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccccEEEEEECCHHHHHHHHH-hCCCEECCEEEEE
Confidence 455678899999999999999999999999999999999998 89999999999999999999996 5888899999999
Q ss_pred EEe
Q 029496 94 EII 96 (192)
Q Consensus 94 ~~~ 96 (192)
+++
T Consensus 85 ~~A 87 (87)
T 3s7r_A 85 KKA 87 (87)
T ss_dssp EEC
T ss_pred EeC
Confidence 875
No 70
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=99.82 E-value=1.3e-19 Score=125.45 Aligned_cols=82 Identities=26% Similarity=0.362 Sum_probs=74.8
Q ss_pred CCCCCCCCEEEEcCCCCCCCHHHHHHHhhhCCCeEEEEEEeCCCCCcceEEEEEEcCHHHHHHHHHHhCCCccCCceEEE
Q 029496 14 SSSIESGTKLYISNLEYGVSNEDIKELFSEVGELKRCSVHFDRSGRSKGTAEVVLTRRADAIAAVKRYNNVQLDGKPMKI 93 (192)
Q Consensus 14 ~~~~~~~~~l~V~nL~~~~te~~L~~~f~~~G~i~~v~i~~~~tg~~~g~afV~f~~~~~a~~Ai~~l~~~~l~g~~i~V 93 (192)
++...+.++|||+|||+++++++|+++|.+||.|..|.|+ ++||||+|.+.++|++||+.|++..|+++.|.|
T Consensus 5 ~~~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~~~-------~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 77 (103)
T 2dgu_A 5 SSGMAKVKVLFVRNLANTVTEEILEKAFSQFGKLERVKKL-------KDYAFIHFDERDGAVKAMEEMNGKDLEGENIEI 77 (103)
T ss_dssp CCCCCCCCCEEEECCCTTCCHHHHHHHHHHHSCEEEEEEC-------SSCEEEEESSHHHHHHHHHHHTTEEETTEEEEE
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEE-------CCEEEEEeCCHHHHHHHHHHHCCCccCCCEEEE
Confidence 3456778999999999999999999999999999999886 569999999999999999999999999999999
Q ss_pred EEeecCCCC
Q 029496 94 EIIGTNIGP 102 (192)
Q Consensus 94 ~~~~~~~~~ 102 (192)
+++.+....
T Consensus 78 ~~a~~~~~~ 86 (103)
T 2dgu_A 78 VFAKPPDQK 86 (103)
T ss_dssp EECCCCCCC
T ss_pred EEcCCCccc
Confidence 999875543
No 71
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=99.82 E-value=2.2e-20 Score=134.94 Aligned_cols=89 Identities=18% Similarity=0.241 Sum_probs=80.9
Q ss_pred ccCCCCCCCCEEEEcCCCCCCCHHHHHHHhhhCCCeEE--EEEEeCC-CCCcceEEEEEEcCHHHHHHHHHHhCCC----
Q 029496 12 ARSSSIESGTKLYISNLEYGVSNEDIKELFSEVGELKR--CSVHFDR-SGRSKGTAEVVLTRRADAIAAVKRYNNV---- 84 (192)
Q Consensus 12 ~~~~~~~~~~~l~V~nL~~~~te~~L~~~f~~~G~i~~--v~i~~~~-tg~~~g~afV~f~~~~~a~~Ai~~l~~~---- 84 (192)
..+......++|||+|||+++|+++|+++|.+||.|.. |.|+.|+ +++++|||||+|.+. +|++|+..|++.
T Consensus 15 ~~~~~~~~~~~lfV~nL~~~~te~~L~~~F~~~G~v~~~~v~i~~d~~tg~~rG~aFV~f~~~-~a~~Ai~~l~g~~~~~ 93 (131)
T 2m2b_A 15 SEPSSENANDTIILRNLNPHSTMDSILGALAPYAVLSSSNVRVIKDKQTQLNRGFAFIQLSTI-EAAQLLQILQALHPPL 93 (131)
T ss_dssp CCCCCSCCCCEEEECSCCTTCCSHHHHHHHGGGCCCCTTTEECCBCSSSSSBCSCEEEECCHH-HHHHHHHHHTTCCCSC
T ss_pred CCCCCCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcceeeEEEEEcCCCCCcceEEEEEECCH-HHHHHHHHhcCCCCCc
Confidence 33445567789999999999999999999999999966 9999999 999999999999999 999999999999
Q ss_pred ccCCceEEEEEeecCCC
Q 029496 85 QLDGKPMKIEIIGTNIG 101 (192)
Q Consensus 85 ~l~g~~i~V~~~~~~~~ 101 (192)
.|+|+.|.|+++.+...
T Consensus 94 ~~~gr~l~V~~a~~~~~ 110 (131)
T 2m2b_A 94 TIDGKTINVEFAKGSKR 110 (131)
T ss_dssp CGGGCCCCCEECCCSCC
T ss_pred cCCCEEEEEEECCCCCC
Confidence 99999999999987544
No 72
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.82 E-value=1.3e-19 Score=125.76 Aligned_cols=86 Identities=22% Similarity=0.287 Sum_probs=78.1
Q ss_pred CCCCCCCCEEEEcCCCCCCCHHHHHHHhhhCCCeEE-EEEEeCCCCCcceEEEEEEcCHHHHHHHHHHhCCCccCCceEE
Q 029496 14 SSSIESGTKLYISNLEYGVSNEDIKELFSEVGELKR-CSVHFDRSGRSKGTAEVVLTRRADAIAAVKRYNNVQLDGKPMK 92 (192)
Q Consensus 14 ~~~~~~~~~l~V~nL~~~~te~~L~~~f~~~G~i~~-v~i~~~~tg~~~g~afV~f~~~~~a~~Ai~~l~~~~l~g~~i~ 92 (192)
.+.....++|||+|||+++++++|+++|.+||.|.. |.|+.+.+++++|||||+|.+.++|++||+. ++..|+++.|.
T Consensus 9 ~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~v~i~~~~~g~~~G~afV~F~~~~~a~~A~~~-~~~~~~gr~i~ 87 (104)
T 1wg5_A 9 SPDTANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVDFQGRSTGEAFVQFASQEIAEKALKK-HKERIGHRYIE 87 (104)
T ss_dssp CSSCSCCCEEEEESCCTTCCHHHHHHHTTTCCEEEEEEECCBCSSSCBCSEEEEEESSHHHHHHHHTT-TTCCSSSSCCE
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCcceeEEEEECCCCCcceEEEEEECCHHHHHHHHHh-CcchhCCcEEE
Confidence 345567799999999999999999999999999987 8888888999999999999999999999987 99999999999
Q ss_pred EEEeecCC
Q 029496 93 IEIIGTNI 100 (192)
Q Consensus 93 V~~~~~~~ 100 (192)
|.++....
T Consensus 88 v~~~~~~~ 95 (104)
T 1wg5_A 88 IFKSSRAE 95 (104)
T ss_dssp EEEECTTT
T ss_pred EEECCHHH
Confidence 99986543
No 73
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.82 E-value=9.1e-20 Score=125.63 Aligned_cols=87 Identities=25% Similarity=0.432 Sum_probs=77.0
Q ss_pred ccCCCCCCCCEEEEcCCCCCCCHHHHHHHhhhCCCeEEEEEEeCCCCCcceEEEEEEcCHHHHHHHHHHhCCCccCCceE
Q 029496 12 ARSSSIESGTKLYISNLEYGVSNEDIKELFSEVGELKRCSVHFDRSGRSKGTAEVVLTRRADAIAAVKRYNNVQLDGKPM 91 (192)
Q Consensus 12 ~~~~~~~~~~~l~V~nL~~~~te~~L~~~f~~~G~i~~v~i~~~~tg~~~g~afV~f~~~~~a~~Ai~~l~~~~l~g~~i 91 (192)
.......+.++|||+|||+++++++|+++|.+||.| .++.+.++++++||||+|.+.++|++||+.|++..|.++.|
T Consensus 7 ~~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v---~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l 83 (101)
T 2fc9_A 7 GNSTWSGESKTLVLSNLSYSATEETLQEVFEKATFI---KVPQNQNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAI 83 (101)
T ss_dssp CCCCCSCCCSEEEEESCCTTCCHHHHHHHCSSCSEE---ECCBCSSSCBCSEEEEECSSHHHHHHHHHHTSSEEETTEEE
T ss_pred CCccCCCCCCEEEEeCCCCCCCHHHHHHHHHhCCEE---EEEECCCCCEeeEEEEEECCHHHHHHHHHHhCCCEeCCeEE
Confidence 334456678999999999999999999999999976 56666788899999999999999999999999999999999
Q ss_pred EEEEeecCCC
Q 029496 92 KIEIIGTNIG 101 (192)
Q Consensus 92 ~V~~~~~~~~ 101 (192)
+|+++.++..
T Consensus 84 ~v~~a~~~~~ 93 (101)
T 2fc9_A 84 RLELQGPRGS 93 (101)
T ss_dssp EEEECSSCCC
T ss_pred EEEEcCCCCC
Confidence 9999987543
No 74
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.82 E-value=9.5e-20 Score=127.14 Aligned_cols=88 Identities=19% Similarity=0.207 Sum_probs=79.5
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHhhhCCC-eEEEEEE-eCC-CCCcceEEEEEEcCHHHHHHHHHHhC--CCccCCceE
Q 029496 17 IESGTKLYISNLEYGVSNEDIKELFSEVGE-LKRCSVH-FDR-SGRSKGTAEVVLTRRADAIAAVKRYN--NVQLDGKPM 91 (192)
Q Consensus 17 ~~~~~~l~V~nL~~~~te~~L~~~f~~~G~-i~~v~i~-~~~-tg~~~g~afV~f~~~~~a~~Ai~~l~--~~~l~g~~i 91 (192)
+.+.++|||+|||+++++++|+++|.+||. |..|.|+ .++ ++.+++||||+|.+.++|++|++.|+ +..|+|+.|
T Consensus 5 s~~~~~l~V~nLp~~~t~~~l~~~f~~~G~~v~~v~i~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~g~~~~~g~~l 84 (109)
T 2dis_A 5 SSGNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQI 84 (109)
T ss_dssp CCCSEEEEEECCCTTSCHHHHHHHHHHHSTTEEEEECCSSSCTTTTTCCEEEEEESSHHHHHHHHTTTTTCCSCBTTBCC
T ss_pred ccCCCEEEEeCCCCcCCHHHHHHHHHHhcCCceEEEEEccCCCCCCcCcEEEEEecCHHHHHHHHHHhhCCCceecCCeE
Confidence 456789999999999999999999999998 9999998 677 88999999999999999999999996 589999999
Q ss_pred EEEEeecCCCCCC
Q 029496 92 KIEIIGTNIGPPA 104 (192)
Q Consensus 92 ~V~~~~~~~~~~~ 104 (192)
+|+++.+......
T Consensus 85 ~V~~a~~~~~~~~ 97 (109)
T 2dis_A 85 AVDWAEPEIDVDE 97 (109)
T ss_dssp EEEESCSSCSTTT
T ss_pred EEEEcCCCCCcCH
Confidence 9999987665433
No 75
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.82 E-value=4.4e-20 Score=129.27 Aligned_cols=89 Identities=18% Similarity=0.379 Sum_probs=79.1
Q ss_pred ccccCCCCCCCCEEEEcCCCCCCCHHHHHHHhhhCCCeEEEEEEeCCCCCcceEEEEEEcCHHHHHHHHHHhCCCccCCc
Q 029496 10 AAARSSSIESGTKLYISNLEYGVSNEDIKELFSEVGELKRCSVHFDRSGRSKGTAEVVLTRRADAIAAVKRYNNVQLDGK 89 (192)
Q Consensus 10 ~~~~~~~~~~~~~l~V~nL~~~~te~~L~~~f~~~G~i~~v~i~~~~tg~~~g~afV~f~~~~~a~~Ai~~l~~~~l~g~ 89 (192)
.+.......+.++|||+|||.++++++|+++|++||.|..|.|+.++. .+++||||+|.+.++|++|++.|++..|+|+
T Consensus 19 ~S~~~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~-~~kg~afV~f~~~~~A~~Ai~~l~g~~~~g~ 97 (109)
T 2err_A 19 SHMNTENKSQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNER-GSKGFGFVTFENSADADRAREKLHGTVVEGR 97 (109)
T ss_dssp ---CCSCTTCCCEEEEESCCTTCCHHHHHHHGGGTCCCSCEEECCBTT-BCTTEEEEECCCSHHHHHHHHHHTTCEETTE
T ss_pred CCCCccCCCCCCEEEEECCCCcCCHHHHHHHHHhcCCEEEEEEEECCC-CCceEEEEEECCHHHHHHHHHHcCCCEECCE
Confidence 344555667789999999999999999999999999999999998863 3799999999999999999999999999999
Q ss_pred eEEEEEeecC
Q 029496 90 PMKIEIIGTN 99 (192)
Q Consensus 90 ~i~V~~~~~~ 99 (192)
.|+|+++.++
T Consensus 98 ~l~V~~a~~~ 107 (109)
T 2err_A 98 KIEVNNATAR 107 (109)
T ss_dssp ECEEEECCCS
T ss_pred EEEEEECCCC
Confidence 9999998764
No 76
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=99.82 E-value=7.8e-20 Score=132.80 Aligned_cols=85 Identities=21% Similarity=0.378 Sum_probs=78.5
Q ss_pred ccCCCCCCCCEEEEcCCCCCCCHHHHHHHhhhCCCeEEEEEEeCC-CCCcceEEEEEEcCHHHHHHHHHHhCCCccCCce
Q 029496 12 ARSSSIESGTKLYISNLEYGVSNEDIKELFSEVGELKRCSVHFDR-SGRSKGTAEVVLTRRADAIAAVKRYNNVQLDGKP 90 (192)
Q Consensus 12 ~~~~~~~~~~~l~V~nL~~~~te~~L~~~f~~~G~i~~v~i~~~~-tg~~~g~afV~f~~~~~a~~Ai~~l~~~~l~g~~ 90 (192)
.......+.++|||+|||..+++++|+++|.+||.|..+.|+.++ ++.+++||||+|.+.++|++|++.|++..|+|+.
T Consensus 55 ~~~~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~ 134 (140)
T 2ku7_A 55 GSGGSATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRT 134 (140)
T ss_dssp SSCSSCSSCCEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCCCTTTCCCCSEEEEEESCHHHHHHHHHHSTEEEETTEE
T ss_pred CCCCCCCCCcEEEEEeCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCEECCEE
Confidence 344456678999999999999999999999999999999999997 8999999999999999999999999999999999
Q ss_pred EEEEEe
Q 029496 91 MKIEII 96 (192)
Q Consensus 91 i~V~~~ 96 (192)
|+|+++
T Consensus 135 l~v~~A 140 (140)
T 2ku7_A 135 IRVNLA 140 (140)
T ss_dssp EEEEC-
T ss_pred EEEEeC
Confidence 999875
No 77
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=99.82 E-value=1.1e-19 Score=136.08 Aligned_cols=87 Identities=24% Similarity=0.384 Sum_probs=80.0
Q ss_pred CCCCCCCEEEEcCCCCCCCHHHHHHHhhhCCCeEEEEEEeCC-CCCcceEEEEEEcCHHHHHHHHHHhCCCccCCceEEE
Q 029496 15 SSIESGTKLYISNLEYGVSNEDIKELFSEVGELKRCSVHFDR-SGRSKGTAEVVLTRRADAIAAVKRYNNVQLDGKPMKI 93 (192)
Q Consensus 15 ~~~~~~~~l~V~nL~~~~te~~L~~~f~~~G~i~~v~i~~~~-tg~~~g~afV~f~~~~~a~~Ai~~l~~~~l~g~~i~V 93 (192)
....+.++|||+|||+.+++++|+.+|.+||.|..|.|+.++ ++.+++||||+|.+.++|++||+.|++..|.|+.|.|
T Consensus 67 ~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V 146 (165)
T 1rk8_A 67 QRSVEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQV 146 (165)
T ss_dssp CCCC-CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEEEecCCCCcEeeEEEEEECCHHHHHHHHHHhCCCEECCEEEEE
Confidence 345667899999999999999999999999999999999998 9999999999999999999999999999999999999
Q ss_pred EEeecCCC
Q 029496 94 EIIGTNIG 101 (192)
Q Consensus 94 ~~~~~~~~ 101 (192)
.++.+...
T Consensus 147 ~~a~~~~~ 154 (165)
T 1rk8_A 147 DWCFVKGP 154 (165)
T ss_dssp EESEECC-
T ss_pred EEecCCCC
Confidence 99987554
No 78
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.81 E-value=7.4e-20 Score=127.05 Aligned_cols=81 Identities=17% Similarity=0.168 Sum_probs=75.7
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHhhhCCCeEEEEEEeCCCCCcceEEEEEEcCHHHHHHHHHHhCCCccCCceEEEEEe
Q 029496 17 IESGTKLYISNLEYGVSNEDIKELFSEVGELKRCSVHFDRSGRSKGTAEVVLTRRADAIAAVKRYNNVQLDGKPMKIEII 96 (192)
Q Consensus 17 ~~~~~~l~V~nL~~~~te~~L~~~f~~~G~i~~v~i~~~~tg~~~g~afV~f~~~~~a~~Ai~~l~~~~l~g~~i~V~~~ 96 (192)
..+.++|||+|||+++|+++|+++|++||.|..|.|+.++.+.++|||||+|.+.++|++||. +++..|+|+.|.|.++
T Consensus 8 ~~~~~~lfV~~Lp~~~te~~L~~~F~~~G~v~~v~i~~d~~g~~rG~aFV~F~~~e~a~~Ai~-~~~~~~~gr~l~V~~~ 86 (103)
T 1s79_A 8 DVKNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLHKAFKGSIFVVFDSIESAKKFVE-TPGQKYKETDLLILFK 86 (103)
T ss_dssp CSGGGCEEEECCCTTCCHHHHHHHHHTSSCEEEEEEECCCTTSCCCEEEEEESSHHHHHHHHT-SSCCCCTTTTCEEEEH
T ss_pred cCCCCEEEEECCCCCCCHHHHHHHHhhcCCEEEEEEEECCCCCCccEEEEEECCHHHHHHHHH-cCCCEECCEEEEEEEc
Confidence 345689999999999999999999999999999999999888999999999999999999998 8999999999999987
Q ss_pred ec
Q 029496 97 GT 98 (192)
Q Consensus 97 ~~ 98 (192)
..
T Consensus 87 ~~ 88 (103)
T 1s79_A 87 DD 88 (103)
T ss_dssp HH
T ss_pred hH
Confidence 54
No 79
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.81 E-value=2e-19 Score=124.00 Aligned_cols=87 Identities=23% Similarity=0.347 Sum_probs=77.6
Q ss_pred cccCCCCCCCCEEEEcCCCCCCCHHHHHHHhhhCCCeEEEEEEeCC-CCCcceEEEEEEcCHHHHHHHHHHhCCCccCCc
Q 029496 11 AARSSSIESGTKLYISNLEYGVSNEDIKELFSEVGELKRCSVHFDR-SGRSKGTAEVVLTRRADAIAAVKRYNNVQLDGK 89 (192)
Q Consensus 11 ~~~~~~~~~~~~l~V~nL~~~~te~~L~~~f~~~G~i~~v~i~~~~-tg~~~g~afV~f~~~~~a~~Ai~~l~~~~l~g~ 89 (192)
..+.....+.++|||+|||+++++++|+++|..| ..|.++.++ ++++++||||+|.+.++|++||+.|++..|.|+
T Consensus 6 ~~~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~---~~~~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~ 82 (102)
T 2fc8_A 6 SGPNARSQPSKTLFVKGLSEDTTEETLKESFDGS---VRARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGN 82 (102)
T ss_dssp CTTSSSSCCCSSEEEECCCTTCCHHHHHHTSTTC---SEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTE
T ss_pred CCCCCCCCCCCEEEEeCCCCccCHHHHHHHhcCC---eEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCeECCe
Confidence 3444566788999999999999999999999987 367788887 899999999999999999999999999999999
Q ss_pred eEEEEEeecCC
Q 029496 90 PMKIEIIGTNI 100 (192)
Q Consensus 90 ~i~V~~~~~~~ 100 (192)
.|+|++++++.
T Consensus 83 ~l~V~~a~~~~ 93 (102)
T 2fc8_A 83 KVTLDWAKPKG 93 (102)
T ss_dssp ECEEEECCCCC
T ss_pred EEEEEEecCCC
Confidence 99999998643
No 80
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=99.81 E-value=1.8e-19 Score=133.66 Aligned_cols=87 Identities=25% Similarity=0.432 Sum_probs=81.1
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHhhhCCCeEEEEEEeCC-CCCcceEEEEEEcCHHHHHHHHHHhCCCccCCceEEEE
Q 029496 16 SIESGTKLYISNLEYGVSNEDIKELFSEVGELKRCSVHFDR-SGRSKGTAEVVLTRRADAIAAVKRYNNVQLDGKPMKIE 94 (192)
Q Consensus 16 ~~~~~~~l~V~nL~~~~te~~L~~~f~~~G~i~~v~i~~~~-tg~~~g~afV~f~~~~~a~~Ai~~l~~~~l~g~~i~V~ 94 (192)
.....++|||+|||+++++++|+++|++||.|..|.|+.++ ++.++|||||+|.+.++|++||+.|++..|.|+.|.|+
T Consensus 66 ~~~~~~~l~v~nl~~~~~~~~l~~~F~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 145 (158)
T 2kn4_A 66 DVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQ 145 (158)
T ss_dssp CCCBCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEECCCCSSCTTSCCEEEEEESBHHHHHHHHHHSTTEESSSSEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEE
Confidence 34567899999999999999999999999999999999998 99999999999999999999999999999999999999
Q ss_pred EeecCCCC
Q 029496 95 IIGTNIGP 102 (192)
Q Consensus 95 ~~~~~~~~ 102 (192)
++.+....
T Consensus 146 ~a~~~~~~ 153 (158)
T 2kn4_A 146 MARYGRPP 153 (158)
T ss_dssp EECCSSCC
T ss_pred ECCCCCCC
Confidence 99875543
No 81
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.81 E-value=7e-20 Score=127.33 Aligned_cols=82 Identities=18% Similarity=0.177 Sum_probs=73.6
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHhhhCCCeEEEEEEeCCCCCcceEEEEEEcCHHHHHHHHHHhCC--CccCCceEEE
Q 029496 16 SIESGTKLYISNLEYGVSNEDIKELFSEVGELKRCSVHFDRSGRSKGTAEVVLTRRADAIAAVKRYNN--VQLDGKPMKI 93 (192)
Q Consensus 16 ~~~~~~~l~V~nL~~~~te~~L~~~f~~~G~i~~v~i~~~~tg~~~g~afV~f~~~~~a~~Ai~~l~~--~~l~g~~i~V 93 (192)
...+.++|||+|||+.+|+++|+++|++||.|.+|.|+.+ +|||||+|.+.++|++|++.|++ ..|.|++|.|
T Consensus 12 ~~~~~~~LfV~nLp~~vte~dL~~lF~~fG~V~~v~i~~~-----kGfaFVeF~~~~~A~~Ai~~l~~~~~~l~Gr~l~V 86 (105)
T 1sjq_A 12 SGVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG-----KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYI 86 (105)
T ss_dssp CCCCCCEEEECSCCTTSCHHHHHHHHHHHCCEEEEEEETT-----TTEEEEEESSHHHHHHHHHHHTTSCCEETTEECCB
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC-----CCEEEEEECCHHHHHHHHHHhccCCceECCEEEEE
Confidence 3467789999999999999999999999999999999865 78999999999999999998864 7899999999
Q ss_pred EEeecCCCC
Q 029496 94 EIIGTNIGP 102 (192)
Q Consensus 94 ~~~~~~~~~ 102 (192)
++++++...
T Consensus 87 ~~A~~~~~~ 95 (105)
T 1sjq_A 87 QFSNHKELK 95 (105)
T ss_dssp CCCSSSSCC
T ss_pred EEcCCCCCC
Confidence 999875544
No 82
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=99.81 E-value=3e-20 Score=135.08 Aligned_cols=90 Identities=24% Similarity=0.417 Sum_probs=82.6
Q ss_pred cCCCCCCCCEEEEcCCCCCCCHHHHHHHhhhCCCeEEEEEEeCC-CCCcceEEEEEEcCHHHHHHHHHHhCCCccCCceE
Q 029496 13 RSSSIESGTKLYISNLEYGVSNEDIKELFSEVGELKRCSVHFDR-SGRSKGTAEVVLTRRADAIAAVKRYNNVQLDGKPM 91 (192)
Q Consensus 13 ~~~~~~~~~~l~V~nL~~~~te~~L~~~f~~~G~i~~v~i~~~~-tg~~~g~afV~f~~~~~a~~Ai~~l~~~~l~g~~i 91 (192)
+++...+.++|||+|||+++++++|+++|++||.|..|.|+.++ ++++++||||+|.+.++|++||+.|++..|+|+.|
T Consensus 40 ~~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~i~g~~l 119 (135)
T 2lea_A 40 PPPDVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGREL 119 (135)
T ss_dssp SCSSGGGCCCEEEECCCSSCHHHHHHHHHGGGSCCSEEECCCCSSSSSCCSCCEEECSCHHHHHHHHTTTTTCCSSSSCC
T ss_pred CCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEE
Confidence 34455667899999999999999999999999999999999998 89999999999999999999999999999999999
Q ss_pred EEEEeecCCCC
Q 029496 92 KIEIIGTNIGP 102 (192)
Q Consensus 92 ~V~~~~~~~~~ 102 (192)
+|+++++....
T Consensus 120 ~V~~a~~~~~~ 130 (135)
T 2lea_A 120 RVQMARYGRPP 130 (135)
T ss_dssp EEEECCCCCCC
T ss_pred EEEECCCCCCC
Confidence 99999875543
No 83
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.81 E-value=2.9e-20 Score=128.62 Aligned_cols=84 Identities=23% Similarity=0.512 Sum_probs=78.7
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHhhhCCCeEEEEEEeCC-CCCcceEEEEEEcCHHHHHHHHHHhCCCccCCceEEEEEe
Q 029496 18 ESGTKLYISNLEYGVSNEDIKELFSEVGELKRCSVHFDR-SGRSKGTAEVVLTRRADAIAAVKRYNNVQLDGKPMKIEII 96 (192)
Q Consensus 18 ~~~~~l~V~nL~~~~te~~L~~~f~~~G~i~~v~i~~~~-tg~~~g~afV~f~~~~~a~~Ai~~l~~~~l~g~~i~V~~~ 96 (192)
.+.++|||+|||+.+++++|+++|++||.|..+.|+.++ ++.+++||||+|.+.++|++|++.|++..|.|+.|+|+++
T Consensus 6 ~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 85 (104)
T 1p1t_A 6 RSLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALRVDNA 85 (104)
T ss_dssp HHHSCEEEESCCTTSCHHHHHHHHHTTSCCSEEEEEEETTTTEEEEEEEEECSCHHHHHHHHHHSSSBSCSSSCBEEEET
T ss_pred CCccEEEEeCCCCcCCHHHHHHHHHhcCCeeEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEeC
Confidence 456899999999999999999999999999999999998 8999999999999999999999999999999999999998
Q ss_pred ecCCC
Q 029496 97 GTNIG 101 (192)
Q Consensus 97 ~~~~~ 101 (192)
.+...
T Consensus 86 ~~~~~ 90 (104)
T 1p1t_A 86 ASEKN 90 (104)
T ss_dssp TCTTH
T ss_pred CCccc
Confidence 76443
No 84
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.81 E-value=4.7e-20 Score=130.08 Aligned_cols=86 Identities=15% Similarity=0.247 Sum_probs=78.8
Q ss_pred CCCCCCCCEEEEcCCCCCCCHHHHHHHhhhCCCe-EEEEEEeCCCCCcceEEEEEEcCHHHHHHHHHHhCCCccCCceEE
Q 029496 14 SSSIESGTKLYISNLEYGVSNEDIKELFSEVGEL-KRCSVHFDRSGRSKGTAEVVLTRRADAIAAVKRYNNVQLDGKPMK 92 (192)
Q Consensus 14 ~~~~~~~~~l~V~nL~~~~te~~L~~~f~~~G~i-~~v~i~~~~tg~~~g~afV~f~~~~~a~~Ai~~l~~~~l~g~~i~ 92 (192)
.....+.++|||+|||+++|+++|+++|.+||.| ..|.|+.+++++++|||||+|.+.++|++||+. ++..|+|+.|.
T Consensus 9 ~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al~~-~~~~~~gr~i~ 87 (114)
T 2cpy_A 9 GDVNSAKVCAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDNNGQGLGQALVQFKNEDDARKSERL-HRKKLNGREAF 87 (114)
T ss_dssp CSCCSCCCEEEEESCCTTSCHHHHHHHTTTSCCCSTTEEECCCTTSSCSSCEEEECSSHHHHHHHGGG-CSEEETTEEEE
T ss_pred CCCCCCccEEEEeCcCCcCCHHHHHHHHHhCCCcCCeEEEEECCCCCcceEEEEEECCHHHHHHHHHh-CCCccCCeEEE
Confidence 3455677899999999999999999999999999 889999999999999999999999999999986 99999999999
Q ss_pred EEEeecCC
Q 029496 93 IEIIGTNI 100 (192)
Q Consensus 93 V~~~~~~~ 100 (192)
|.++.+..
T Consensus 88 v~~a~~~~ 95 (114)
T 2cpy_A 88 VHVVTLED 95 (114)
T ss_dssp EEEECHHH
T ss_pred EEECCHHH
Confidence 99997643
No 85
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.81 E-value=9.9e-20 Score=129.31 Aligned_cols=83 Identities=19% Similarity=0.257 Sum_probs=77.6
Q ss_pred CCCCCCCEEEEcCCCCCCCHHHHHHHhhhCCC---eEEEEEEeCCCCCcceEEEEEEcCHHHHHHHHHHhCCCccCCceE
Q 029496 15 SSIESGTKLYISNLEYGVSNEDIKELFSEVGE---LKRCSVHFDRSGRSKGTAEVVLTRRADAIAAVKRYNNVQLDGKPM 91 (192)
Q Consensus 15 ~~~~~~~~l~V~nL~~~~te~~L~~~f~~~G~---i~~v~i~~~~tg~~~g~afV~f~~~~~a~~Ai~~l~~~~l~g~~i 91 (192)
+...+.++|||+|||+++|+++|+++|+.||. |..|.|+.+++++++|||||+|.+.++|++||+ |++..|+++.|
T Consensus 12 ~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~~~~v~~v~i~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i 90 (118)
T 2db1_A 12 PEGGEGYVVKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVHFIYTREGRQSGEAFVELESEDDVKLALK-KDRESMGHRYI 90 (118)
T ss_dssp SCBCCCCEEEEESCCTTCCHHHHHHHTTTSCBTTGGGGEEEEECSSSCEEEEEEEEBSSHHHHHHHGG-GTTEEETTEEE
T ss_pred CCCCCCcEEEEeCCCCCCCHHHHHHHHHHcCCccCceeEEEEECCCCCCCeEEEEEECCHHHHHHHHh-cCCCeECCeEE
Confidence 44567789999999999999999999999998 899999999889999999999999999999998 99999999999
Q ss_pred EEEEeec
Q 029496 92 KIEIIGT 98 (192)
Q Consensus 92 ~V~~~~~ 98 (192)
+|.++..
T Consensus 91 ~V~~a~~ 97 (118)
T 2db1_A 91 EVFKSHR 97 (118)
T ss_dssp EEEEECH
T ss_pred EEEECCH
Confidence 9999865
No 86
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.81 E-value=2.1e-20 Score=124.84 Aligned_cols=80 Identities=20% Similarity=0.276 Sum_probs=74.5
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHhhhCCCeEEEEEEeCC-CCCcceEEEEEEcCHHHHHHHHHHhCCCccCCceEEEEE
Q 029496 17 IESGTKLYISNLEYGVSNEDIKELFSEVGELKRCSVHFDR-SGRSKGTAEVVLTRRADAIAAVKRYNNVQLDGKPMKIEI 95 (192)
Q Consensus 17 ~~~~~~l~V~nL~~~~te~~L~~~f~~~G~i~~v~i~~~~-tg~~~g~afV~f~~~~~a~~Ai~~l~~~~l~g~~i~V~~ 95 (192)
..+.++|||+|||+++++++|+++|++||.|..+.|+.++ ++.+++||||+|.+.++|++|++.|++..|+++.|+|++
T Consensus 2 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~~ 81 (85)
T 1x4e_A 2 SSGSSGLYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTALKASGVQAQMAKQSG 81 (85)
T ss_dssp CCCCCEEEEESCCTTCCHHHHHTTSTTTSCEEEEEEECCSSSCSCCSEEEEEESCHHHHHHHHHHHHHHTCCEESCCSSC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhcCCeEeeEEEeecC
Confidence 3567899999999999999999999999999999999998 899999999999999999999999999999999887654
Q ss_pred e
Q 029496 96 I 96 (192)
Q Consensus 96 ~ 96 (192)
.
T Consensus 82 ~ 82 (85)
T 1x4e_A 82 P 82 (85)
T ss_dssp C
T ss_pred C
Confidence 3
No 87
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.81 E-value=3.7e-19 Score=120.12 Aligned_cols=80 Identities=23% Similarity=0.395 Sum_probs=73.9
Q ss_pred CCCCCCCEEEEcCCCCCCCHHHHHHHhhhCCCeEEEEEEeCCCCCcceEEEEEEcCHHHHHHHHHHhCCCccCCceEEEE
Q 029496 15 SSIESGTKLYISNLEYGVSNEDIKELFSEVGELKRCSVHFDRSGRSKGTAEVVLTRRADAIAAVKRYNNVQLDGKPMKIE 94 (192)
Q Consensus 15 ~~~~~~~~l~V~nL~~~~te~~L~~~f~~~G~i~~v~i~~~~tg~~~g~afV~f~~~~~a~~Ai~~l~~~~l~g~~i~V~ 94 (192)
+...+.++|||+|||+++++++|+++|++||.|..|.++ ++||||+|.+.++|++|++.|++..|+|+.|+|+
T Consensus 3 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~-------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 75 (90)
T 2dnq_A 3 SGSSGMVKLFIGNLPREATEQEIRSLFEQYGKVLECDII-------KNYGFVHIEDKTAAEDAIRNLHHYKLHGVNINVE 75 (90)
T ss_dssp SCSSCCEEEEEESCCSSCCHHHHHHHHHTSSCEEEEEEE-------TTEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEE
T ss_pred CCCCCCeEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEE-------CCEEEEEECCHHHHHHHHHHhcCCccCCcEEEEE
Confidence 345678999999999999999999999999999999987 6799999999999999999999999999999999
Q ss_pred EeecCCC
Q 029496 95 IIGTNIG 101 (192)
Q Consensus 95 ~~~~~~~ 101 (192)
++.++..
T Consensus 76 ~a~~~~~ 82 (90)
T 2dnq_A 76 ASKNKSK 82 (90)
T ss_dssp CSSCCCC
T ss_pred ECCCCCC
Confidence 9987554
No 88
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.81 E-value=4.5e-19 Score=124.70 Aligned_cols=84 Identities=20% Similarity=0.381 Sum_probs=77.8
Q ss_pred CCCCCCCEEEEcCCCCCCCHHHHHHHhhhCCCeEEEEEEeCCCCCcceEEEEEEcCHHHHHHHHHHhCCCcc--------
Q 029496 15 SSIESGTKLYISNLEYGVSNEDIKELFSEVGELKRCSVHFDRSGRSKGTAEVVLTRRADAIAAVKRYNNVQL-------- 86 (192)
Q Consensus 15 ~~~~~~~~l~V~nL~~~~te~~L~~~f~~~G~i~~v~i~~~~tg~~~g~afV~f~~~~~a~~Ai~~l~~~~l-------- 86 (192)
....+.++|||+|||+++++++|+++|.+||.|..|.|+.++++.+++||||+|.+.++|++|++.|++..|
T Consensus 20 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~~~~~~~ 99 (114)
T 1x5o_A 20 QQEQDPTNLYISNLPLSMDEQELENMLKPFGQVISTRILRDSSGTSRGVGFARMESTEKCEAVIGHFNGKFIKTPPGVSA 99 (114)
T ss_dssp CCCCCTTEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEEECSSSCEEEEEEEEESCHHHHHHHHHHHBTCCCCCCTTSCC
T ss_pred ccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCcceEEEEEECCHHHHHHHHHHhCCCEEcCCccccC
Confidence 344577899999999999999999999999999999999999899999999999999999999999999999
Q ss_pred CCceEEEEEeec
Q 029496 87 DGKPMKIEIIGT 98 (192)
Q Consensus 87 ~g~~i~V~~~~~ 98 (192)
.+++|.|.++.+
T Consensus 100 ~~~~l~v~~a~p 111 (114)
T 1x5o_A 100 PTEPLLCKFSGP 111 (114)
T ss_dssp CSSCBEEEECCC
T ss_pred CCCceeEEccCC
Confidence 577899999875
No 89
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.81 E-value=2.9e-19 Score=124.27 Aligned_cols=84 Identities=14% Similarity=0.075 Sum_probs=73.8
Q ss_pred cCCCCCCCCEEEEcCCCCCCCHHHHHHHhhhCCCeEEEEEEeCCCCCcceEEEEEEcCHHHHHHHHHHhCC--CccCCce
Q 029496 13 RSSSIESGTKLYISNLEYGVSNEDIKELFSEVGELKRCSVHFDRSGRSKGTAEVVLTRRADAIAAVKRYNN--VQLDGKP 90 (192)
Q Consensus 13 ~~~~~~~~~~l~V~nL~~~~te~~L~~~f~~~G~i~~v~i~~~~tg~~~g~afV~f~~~~~a~~Ai~~l~~--~~l~g~~ 90 (192)
......+.++|||+|||+.+++++|+++|++||.|..|.|+.+ ++||||+|.+.++|++|++.|++ ..|.|++
T Consensus 8 ~~~~~~p~~~l~V~nLp~~~te~~L~~~F~~fG~V~~v~i~~~-----kg~aFVef~~~~~A~~Ai~~l~~~~~~i~Gr~ 82 (104)
T 1wex_A 8 SHHKVSVSPVVHVRGLCESVVEADLVEALEKFGTICYVMMMPF-----KRQALVEFENIDSAKECVTFAADVPVYIAGQQ 82 (104)
T ss_dssp SCCCCCCCSEEEEESCCSSCCHHHHHHHHTTTSCEEEEEEETT-----TTEEEEEESSHHHHHHHHHHHHHSCCBSSSSB
T ss_pred CCCcCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEECC-----CCEEEEEECCHHHHHHHHHHhccCCceECCEE
Confidence 3345567899999999999999999999999999999998753 78999999999999999998865 4599999
Q ss_pred EEEEEeecCCC
Q 029496 91 MKIEIIGTNIG 101 (192)
Q Consensus 91 i~V~~~~~~~~ 101 (192)
|.|+++..+..
T Consensus 83 l~V~~a~~~~~ 93 (104)
T 1wex_A 83 AFFNYSTSKRI 93 (104)
T ss_dssp CEEEECSSSSC
T ss_pred EEEEEccCccc
Confidence 99999986544
No 90
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=99.80 E-value=4.6e-20 Score=127.15 Aligned_cols=86 Identities=17% Similarity=0.317 Sum_probs=73.8
Q ss_pred ccCCCCCCCCEEEEcCCCCCCCHHHHHHHhhhCCCeEEEEEEeCC--CCCcceEEEEEEcCHHHHHHHHHHhCCCccCCc
Q 029496 12 ARSSSIESGTKLYISNLEYGVSNEDIKELFSEVGELKRCSVHFDR--SGRSKGTAEVVLTRRADAIAAVKRYNNVQLDGK 89 (192)
Q Consensus 12 ~~~~~~~~~~~l~V~nL~~~~te~~L~~~f~~~G~i~~v~i~~~~--tg~~~g~afV~f~~~~~a~~Ai~~l~~~~l~g~ 89 (192)
.........++|||+|||+++++++|+++|++|| |..|.|+.++ +++++|||||+|.+.++|++|+ .|++..|+|+
T Consensus 11 ~~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~Ai-~l~g~~~~g~ 88 (100)
T 2j76_E 11 RSRLPKSPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNR 88 (100)
T ss_dssp ---------CEEEESCCSSCCSSSHHHHHSCSSC-EEEEECSCCTTTTCCCCSCEEEEECCHHHHHHHH-HTTTCCBTTB
T ss_pred CCcCCCCCCcEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEecCCcCCccCeEEEEEECCHHHHHHHH-hcCCCEECCe
Confidence 3345667789999999999999999999999999 9999999986 7899999999999999999999 8999999999
Q ss_pred eEEEEEeecC
Q 029496 90 PMKIEIIGTN 99 (192)
Q Consensus 90 ~i~V~~~~~~ 99 (192)
.|+|+++.+.
T Consensus 89 ~l~V~~a~~~ 98 (100)
T 2j76_E 89 RIRVDVADQA 98 (100)
T ss_dssp CCCCEECCCS
T ss_pred EEEEEeccCC
Confidence 9999998764
No 91
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.80 E-value=2.2e-19 Score=126.07 Aligned_cols=86 Identities=20% Similarity=0.366 Sum_probs=77.9
Q ss_pred CCCCCCCEEEEcCCCCCCCHHHHH---HHhhhCCCeEEEEEEeCC-CC---CcceEEEEEEcCHHHHHHHHHHhCCCccC
Q 029496 15 SSIESGTKLYISNLEYGVSNEDIK---ELFSEVGELKRCSVHFDR-SG---RSKGTAEVVLTRRADAIAAVKRYNNVQLD 87 (192)
Q Consensus 15 ~~~~~~~~l~V~nL~~~~te~~L~---~~f~~~G~i~~v~i~~~~-tg---~~~g~afV~f~~~~~a~~Ai~~l~~~~l~ 87 (192)
......++|||+|||+++++++|+ ++|.+||.|..|.|+.++ ++ .++|||||+|.+.++|++||+.|++..|+
T Consensus 10 ~r~~~~~~l~V~nLp~~~~~~~l~~~~~~F~~~G~i~~v~i~~~~~~~~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~ 89 (111)
T 2cpi_A 10 VRVVQKNLVFVVGLSQRLADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVVVD 89 (111)
T ss_dssp CCCCCSSCEEEEEECTTTCCHHHHHSTTTTTTTSCEEEEEEECCSSCCSSSCCCEEEEEEESSHHHHHHHHHHHTTEEET
T ss_pred ccccCCCEEEEECCCCCCCHHHHHHHHHHhhccCCEEEEEEecCCCcCccCCCCeEEEEEECcHHHHHHHHHHhCCCEEC
Confidence 345567899999999999999999 999999999999999887 44 45699999999999999999999999999
Q ss_pred CceEEEEEeecCC
Q 029496 88 GKPMKIEIIGTNI 100 (192)
Q Consensus 88 g~~i~V~~~~~~~ 100 (192)
|+.|+|+++.++.
T Consensus 90 gr~l~V~~a~~k~ 102 (111)
T 2cpi_A 90 GRTLKASLGTTKY 102 (111)
T ss_dssp TEEEEEESCCCCS
T ss_pred CEEEEEEeccccc
Confidence 9999999998754
No 92
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.80 E-value=3.8e-19 Score=120.53 Aligned_cols=82 Identities=27% Similarity=0.477 Sum_probs=74.7
Q ss_pred CCCCCCCCEEEEcCCCCCCCHHHHHHHhhhCCCeEEEEEEeCCCCCcceEEEEEEcCHHHHHHHHHHhCCCccCCceEEE
Q 029496 14 SSSIESGTKLYISNLEYGVSNEDIKELFSEVGELKRCSVHFDRSGRSKGTAEVVLTRRADAIAAVKRYNNVQLDGKPMKI 93 (192)
Q Consensus 14 ~~~~~~~~~l~V~nL~~~~te~~L~~~f~~~G~i~~v~i~~~~tg~~~g~afV~f~~~~~a~~Ai~~l~~~~l~g~~i~V 93 (192)
.+...+.++|||+|||+++++++|+++|++||.|..|.++ ++||||+|.+.++|++|++.|++..|.|+.|+|
T Consensus 4 ~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~~~-------~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V 76 (92)
T 2dgt_A 4 GSSGKASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIV-------KDYAFVHMERAEDAVEAIRGLDNTEFQGKRMHV 76 (92)
T ss_dssp SCCCCSSEEEEEESCCSSCCHHHHHHHHHTTSCCCEEEEC-------SSEEEEEESCHHHHHHHHHHHTTEEETTEEEEE
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEE-------CCEEEEEECCHHHHHHHHHHhCCCeeCCcEEEE
Confidence 4566778999999999999999999999999999999987 449999999999999999999999999999999
Q ss_pred EEeecCCCC
Q 029496 94 EIIGTNIGP 102 (192)
Q Consensus 94 ~~~~~~~~~ 102 (192)
++++++...
T Consensus 77 ~~a~~~~~~ 85 (92)
T 2dgt_A 77 QLSTSRLRT 85 (92)
T ss_dssp EESSCCCSC
T ss_pred EEccCCCCC
Confidence 999875443
No 93
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=99.80 E-value=1.7e-19 Score=126.30 Aligned_cols=86 Identities=26% Similarity=0.403 Sum_probs=75.0
Q ss_pred CCCCCCCEEEEcCCCCCCCHHHHHHHhhhCCCeEEEEEEeCC-CCCcceEEEEEEcCHHHHHHHHHHhCCCccCCceEEE
Q 029496 15 SSIESGTKLYISNLEYGVSNEDIKELFSEVGELKRCSVHFDR-SGRSKGTAEVVLTRRADAIAAVKRYNNVQLDGKPMKI 93 (192)
Q Consensus 15 ~~~~~~~~l~V~nL~~~~te~~L~~~f~~~G~i~~v~i~~~~-tg~~~g~afV~f~~~~~a~~Ai~~l~~~~l~g~~i~V 93 (192)
....+.++|||+|||+++++++|+++|++||.|..|.|+.++ ++.++|||||+|.+.++|++|++.+ +..|+|+.|.|
T Consensus 20 ~~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~afV~f~~~~~A~~Ai~~~-~~~l~g~~l~V 98 (109)
T 2rs2_A 20 HMGSSGCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQS-RHELDSKTIDP 98 (109)
T ss_dssp ------CCEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCCTTTCCCTTCEEEEESSHHHHHHHHHSS-CEEETTEEEEE
T ss_pred ccCCCCCEEEEeCCCCCCCHHHHHHHHHccCCeEEEEEEECCCCCCcCcEEEEEECCHHHHHHHHHHC-CCcCCCEEEEE
Confidence 345577899999999999999999999999999999999998 8999999999999999999999876 48899999999
Q ss_pred EEeecCCC
Q 029496 94 EIIGTNIG 101 (192)
Q Consensus 94 ~~~~~~~~ 101 (192)
+++.++..
T Consensus 99 ~~a~~~~~ 106 (109)
T 2rs2_A 99 KVAFPRRA 106 (109)
T ss_dssp EECCCCCC
T ss_pred EEccCCCC
Confidence 99986543
No 94
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.80 E-value=5.1e-20 Score=129.65 Aligned_cols=81 Identities=23% Similarity=0.363 Sum_probs=76.3
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHhhhCCCeEEEEEEeCC-CCCcceEEEEEEcCHHHHHHHHHHhCCCccCCceEEEEEee
Q 029496 19 SGTKLYISNLEYGVSNEDIKELFSEVGELKRCSVHFDR-SGRSKGTAEVVLTRRADAIAAVKRYNNVQLDGKPMKIEIIG 97 (192)
Q Consensus 19 ~~~~l~V~nL~~~~te~~L~~~f~~~G~i~~v~i~~~~-tg~~~g~afV~f~~~~~a~~Ai~~l~~~~l~g~~i~V~~~~ 97 (192)
..++|||+|||+++++++|+++|.+||.|..|.|+.++ ++.+++||||+|.+.++|++|| .|++..|+|+.|.|+++.
T Consensus 24 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a~ 102 (114)
T 2cq4_A 24 DARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAI-GLTGQRLLGVPIIVQASQ 102 (114)
T ss_dssp HHTEEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCSCCSSSCCCCEEEEESCGGGHHHHH-HHTTEEETTEEEEEEEHH
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCEeEEEEEecCCCCccCcEEEEEeCcHHHHHHHH-HcCCCEeCCeEEEEEecC
Confidence 34799999999999999999999999999999999998 7999999999999999999999 999999999999999987
Q ss_pred cCC
Q 029496 98 TNI 100 (192)
Q Consensus 98 ~~~ 100 (192)
+..
T Consensus 103 ~~~ 105 (114)
T 2cq4_A 103 AEK 105 (114)
T ss_dssp HHH
T ss_pred CCc
Confidence 643
No 95
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=99.80 E-value=3.3e-19 Score=127.24 Aligned_cols=82 Identities=28% Similarity=0.517 Sum_probs=76.8
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHhhhCCCeEEEEEEeCC-CCCcceEEEEEEcCHHHHHHHHHHhCCCccCCceEEEEEee
Q 029496 19 SGTKLYISNLEYGVSNEDIKELFSEVGELKRCSVHFDR-SGRSKGTAEVVLTRRADAIAAVKRYNNVQLDGKPMKIEIIG 97 (192)
Q Consensus 19 ~~~~l~V~nL~~~~te~~L~~~f~~~G~i~~v~i~~~~-tg~~~g~afV~f~~~~~a~~Ai~~l~~~~l~g~~i~V~~~~ 97 (192)
+.++|||+|||+++++++|+++|++||.|..|.|+.++ ++.+++||||+|.+.++|++|+ .|++..|+|+.|+|++++
T Consensus 35 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a~ 113 (124)
T 2jwn_A 35 DKRSVYVGNVDYGSTAQDLEAHFSSCGSINRITILCDKFSGHPKGYAYIEFAERNSVDAAV-AMDETVFRGRTIKVLPKR 113 (124)
T ss_dssp HHTEEEEEEECTTCCHHHHHHHHHTTSCEEEEEEEEECTTSSCEEEEEEEESSHHHHHHHH-TTTTCEETTEECEEEESS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcccEEEEEECCHHHHHHHH-hcCCCeECCeEEEEEECC
Confidence 35799999999999999999999999999999999997 9999999999999999999999 799999999999999987
Q ss_pred cCCC
Q 029496 98 TNIG 101 (192)
Q Consensus 98 ~~~~ 101 (192)
+...
T Consensus 114 ~~~~ 117 (124)
T 2jwn_A 114 TNMP 117 (124)
T ss_dssp CCCS
T ss_pred CCCC
Confidence 5433
No 96
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=99.80 E-value=7.9e-20 Score=119.19 Aligned_cols=74 Identities=18% Similarity=0.356 Sum_probs=70.8
Q ss_pred EEEEcCCCCCCCHHHHHHHhhhCCCeEEEEEEeCC-CCCcceEEEEEEcCHHHHHHHHHHhCCCccCCceEEEEEe
Q 029496 22 KLYISNLEYGVSNEDIKELFSEVGELKRCSVHFDR-SGRSKGTAEVVLTRRADAIAAVKRYNNVQLDGKPMKIEII 96 (192)
Q Consensus 22 ~l~V~nL~~~~te~~L~~~f~~~G~i~~v~i~~~~-tg~~~g~afV~f~~~~~a~~Ai~~l~~~~l~g~~i~V~~~ 96 (192)
+|||+|||+++++++|+++|++||.|..+.++.++ +++++|||||+|.+.++|++|++ |++..|+|+.|.|+++
T Consensus 1 ~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~-~~~~~~~g~~l~v~~A 75 (75)
T 2mss_A 1 KIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCE-IHFHEINNKMVECKKA 75 (75)
T ss_dssp CEEEECCCSSCCHHHHHHHHHTTSCCSEECCCBCSSSTTSCBEEEEECSCHHHHHHHHS-SSCCCSSSCCCEEECC
T ss_pred CEEEecCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHH-CCCCEECCEEEEEEeC
Confidence 58999999999999999999999999999999998 89999999999999999999997 8999999999999864
No 97
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.80 E-value=2.1e-19 Score=124.54 Aligned_cols=81 Identities=17% Similarity=0.217 Sum_probs=72.7
Q ss_pred CCCCCCEEEEcCCCC-CCCHHHHHHHhhhCCCeEEEEEEeCCCCCcceEEEEEEcCHHHHHHHHHHhCCC--ccCCceEE
Q 029496 16 SIESGTKLYISNLEY-GVSNEDIKELFSEVGELKRCSVHFDRSGRSKGTAEVVLTRRADAIAAVKRYNNV--QLDGKPMK 92 (192)
Q Consensus 16 ~~~~~~~l~V~nL~~-~~te~~L~~~f~~~G~i~~v~i~~~~tg~~~g~afV~f~~~~~a~~Ai~~l~~~--~l~g~~i~ 92 (192)
..++.++|||+|||+ .+|+++|+++|++||.|.+|.|+.+ ++||||+|++.++|++||+.|++. .|.|++|.
T Consensus 11 ~~~p~~~l~V~nLp~~~~te~dL~~lF~~fG~V~~v~i~~~-----kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~ 85 (102)
T 1x4d_A 11 RVETRRVVHIMDFQRGKNLRYQLLQLVEPFGVISNHLILNK-----INEAFIEMATTEDAQAAVDYYTTTPALVFGKPVR 85 (102)
T ss_dssp CCCCCCEEEEESCCCSSSHHHHHHTTTGGGSCEEEEEECSS-----SSCEEEEESSHHHHHHHHHHHHHSCCEETTEECE
T ss_pred CCCCCCEEEEeCCCCCcCCHHHHHHHHHhcCCEEEEEEEcC-----CCEEEEEECCHHHHHHHHHHHcCCCceECCcEEE
Confidence 445789999999999 9999999999999999999999865 579999999999999999998864 59999999
Q ss_pred EEEeecCCC
Q 029496 93 IEIIGTNIG 101 (192)
Q Consensus 93 V~~~~~~~~ 101 (192)
|+++.....
T Consensus 86 V~~a~~~~~ 94 (102)
T 1x4d_A 86 VHLSQKYKR 94 (102)
T ss_dssp EEEECCCTT
T ss_pred EEECCCCCC
Confidence 999986544
No 98
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=99.80 E-value=1.2e-19 Score=132.05 Aligned_cols=83 Identities=19% Similarity=0.244 Sum_probs=77.5
Q ss_pred CCCCCCCEEEEcCCCCCCCHHHHHHHhhhCCC---eEEEEEEeCCCCCcceEEEEEEcCHHHHHHHHHHhCCCccCCceE
Q 029496 15 SSIESGTKLYISNLEYGVSNEDIKELFSEVGE---LKRCSVHFDRSGRSKGTAEVVLTRRADAIAAVKRYNNVQLDGKPM 91 (192)
Q Consensus 15 ~~~~~~~~l~V~nL~~~~te~~L~~~f~~~G~---i~~v~i~~~~tg~~~g~afV~f~~~~~a~~Ai~~l~~~~l~g~~i 91 (192)
+...+.++|||+|||+++|+++|+++|++||. |..|.|+.++.++++|||||+|.+.++|++||+ |++..|+++.|
T Consensus 39 ~~~~~~~~lfVgnLp~~~te~dL~~~F~~~G~v~~v~~v~i~~d~~g~srG~aFV~F~~~e~a~~Al~-~~g~~l~gr~i 117 (136)
T 2hgl_A 39 PEGGEGFVVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTREGRQSGEAFVELGSEDDVKMALK-KDRESMGHRYI 117 (136)
T ss_dssp SSCCTTCEEEEESCCTTCCHHHHHHHTTTCCCSSSSTTEEEEECSSSCEEEEEEEECSSHHHHHHHHT-TTEEESSSSEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcCceeEEEEEECCCCCCCeEEEEEECCHHHHHHHHh-cCCCEECCEEE
Confidence 45567789999999999999999999999999 889999999889999999999999999999998 99999999999
Q ss_pred EEEEeec
Q 029496 92 KIEIIGT 98 (192)
Q Consensus 92 ~V~~~~~ 98 (192)
.|.++..
T Consensus 118 ~V~~a~~ 124 (136)
T 2hgl_A 118 EVFKSHR 124 (136)
T ss_dssp EEEECCH
T ss_pred EEEECCh
Confidence 9998754
No 99
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.80 E-value=1e-19 Score=128.54 Aligned_cols=83 Identities=25% Similarity=0.381 Sum_probs=77.4
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHhhhCCCeEEEEEEeCC-CCCcceEEEEEEcCHHHHHHHHHHhCCCccCCceEEEEEe
Q 029496 18 ESGTKLYISNLEYGVSNEDIKELFSEVGELKRCSVHFDR-SGRSKGTAEVVLTRRADAIAAVKRYNNVQLDGKPMKIEII 96 (192)
Q Consensus 18 ~~~~~l~V~nL~~~~te~~L~~~f~~~G~i~~v~i~~~~-tg~~~g~afV~f~~~~~a~~Ai~~l~~~~l~g~~i~V~~~ 96 (192)
.+.++|||+|||+++++++|+++|.+||.|..|.|+.++ ++.++|||||+|.+.++|++||+. ++..|+|+.|.|+++
T Consensus 25 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~-~~~~~~g~~l~V~~a 103 (116)
T 1x4b_A 25 EQFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA-RPHSIDGRVVEPKRA 103 (116)
T ss_dssp HHHTEEEEECCTTCCCHHHHHHHHTSSCCCSEEEEECCTTTSSCCSEEEEECSSHHHHHHHHTS-CSEEETTEEEEEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCcCceEEEEeCCHHHHHHHHHh-CCcEECCEEEEEEEC
Confidence 345899999999999999999999999999999999998 899999999999999999999987 999999999999999
Q ss_pred ecCCC
Q 029496 97 GTNIG 101 (192)
Q Consensus 97 ~~~~~ 101 (192)
.++..
T Consensus 104 ~~~~~ 108 (116)
T 1x4b_A 104 VAREE 108 (116)
T ss_dssp SSCCC
T ss_pred CCCcc
Confidence 87544
No 100
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=99.80 E-value=3e-19 Score=123.02 Aligned_cols=79 Identities=23% Similarity=0.228 Sum_probs=72.1
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHhhhCCCeEEEEEEeCCCCCcceEEEEEEcCHHHHHHHHHHhCCCc--cCCceEEE
Q 029496 16 SIESGTKLYISNLEYGVSNEDIKELFSEVGELKRCSVHFDRSGRSKGTAEVVLTRRADAIAAVKRYNNVQ--LDGKPMKI 93 (192)
Q Consensus 16 ~~~~~~~l~V~nL~~~~te~~L~~~f~~~G~i~~v~i~~~~tg~~~g~afV~f~~~~~a~~Ai~~l~~~~--l~g~~i~V 93 (192)
...++++|||+|||+.+|+++|+++|++||.|.++.++. .++||||+|++.++|++|++.|++.. |.|++|.|
T Consensus 17 ~~~ps~~l~V~NLp~~~te~~L~~lF~~fG~V~~v~i~~-----~kg~AFVef~~~~~A~~Av~~ln~~~~~i~Gr~i~V 91 (100)
T 3r27_A 17 KTPASPVVHIRGLIDGVVEADLVEALQEFGPISYVVVMP-----KKRQALVEFEDVLGACNAVNYAADNQIYIAGHPAFV 91 (100)
T ss_dssp CCCCCSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEET-----TTTEEEEEESSHHHHHHHHHHHHHSCEEETTEEEEE
T ss_pred cCCCCcEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEEc-----CCCEEEEEECCHHHHHHHHHHhcCCCceeCCcEEEE
Confidence 456788999999999999999999999999999999874 47899999999999999999998876 78999999
Q ss_pred EEeecC
Q 029496 94 EIIGTN 99 (192)
Q Consensus 94 ~~~~~~ 99 (192)
++++.+
T Consensus 92 ~~S~~k 97 (100)
T 3r27_A 92 NYSTSQ 97 (100)
T ss_dssp EECSCS
T ss_pred Eecccc
Confidence 999764
No 101
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.80 E-value=8.7e-19 Score=121.22 Aligned_cols=83 Identities=19% Similarity=0.156 Sum_probs=73.5
Q ss_pred CCCCCCCEEEEcCCCCCCCHHHHHHHhhhCCCeEEEEEEeCCCCCcceEEEEEEcCHHHHHHHHHHh--CCCccCCceEE
Q 029496 15 SSIESGTKLYISNLEYGVSNEDIKELFSEVGELKRCSVHFDRSGRSKGTAEVVLTRRADAIAAVKRY--NNVQLDGKPMK 92 (192)
Q Consensus 15 ~~~~~~~~l~V~nL~~~~te~~L~~~f~~~G~i~~v~i~~~~tg~~~g~afV~f~~~~~a~~Ai~~l--~~~~l~g~~i~ 92 (192)
....+.++|||+|||+.+++++|+++|++||.|.+|.|+.+ ++||||+|.+.++|++|++.| ++..|.|++|.
T Consensus 10 ~~~~p~~~l~V~nLp~~~te~~L~~~F~~fG~v~~v~i~~~-----kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~ 84 (101)
T 2cq1_A 10 MDGAPSRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLKG-----KNQAFLELATEEAAITMVNYYSAVTPHLRNQPIY 84 (101)
T ss_dssp CCSSCCSEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEETT-----TTEEEEEESSHHHHHHHHHHHHHSCCEETTEECE
T ss_pred ccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEECC-----CCEEEEEECCHHHHHHHHHHhccCCceECCcEEE
Confidence 34567789999999999999999999999999999988754 789999999999999999977 46779999999
Q ss_pred EEEeecCCCC
Q 029496 93 IEIIGTNIGP 102 (192)
Q Consensus 93 V~~~~~~~~~ 102 (192)
|++++.+...
T Consensus 85 V~~a~~~~~~ 94 (101)
T 2cq1_A 85 IQYSNHKELK 94 (101)
T ss_dssp EEECSCSSCC
T ss_pred EEEcCcccCc
Confidence 9999865543
No 102
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.80 E-value=8.1e-20 Score=119.56 Aligned_cols=75 Identities=27% Similarity=0.478 Sum_probs=72.0
Q ss_pred CEEEEcCCCCCCCHHHHHHHhhhCCCeEEEEEEeCC-CCCcceEEEEEEcCHHHHHHHHHHhCCCccCCceEEEEEe
Q 029496 21 TKLYISNLEYGVSNEDIKELFSEVGELKRCSVHFDR-SGRSKGTAEVVLTRRADAIAAVKRYNNVQLDGKPMKIEII 96 (192)
Q Consensus 21 ~~l~V~nL~~~~te~~L~~~f~~~G~i~~v~i~~~~-tg~~~g~afV~f~~~~~a~~Ai~~l~~~~l~g~~i~V~~~ 96 (192)
++|||+|||+++++++|+++|++||.|..+.++.++ ++.++|||||+|.+.++|++|++.++ ..++|+.|.|+++
T Consensus 1 ~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~-~~~~g~~l~v~~a 76 (77)
T 1uaw_A 1 CKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSR-HELDSKTIDPKVA 76 (77)
T ss_dssp CCEEEESCCSSCCSHHHHHHHTTTSCCCCEEEECCCCSSSCSSEEEECCCCTTHHHHHHHTTT-CCCSSCCCEEEEC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEecCCCCCCcCceEEEEEcCHHHHHHHHHhCC-CccCCEEEEEEec
Confidence 579999999999999999999999999999999998 89999999999999999999999999 9999999999886
No 103
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=99.80 E-value=2.5e-19 Score=126.65 Aligned_cols=76 Identities=26% Similarity=0.404 Sum_probs=65.4
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHhhhCCCeEEEEEEeCCCCCcceEEEEEEcCHHHHHHHHHHhCCCccCCce-----
Q 029496 16 SIESGTKLYISNLEYGVSNEDIKELFSEVGELKRCSVHFDRSGRSKGTAEVVLTRRADAIAAVKRYNNVQLDGKP----- 90 (192)
Q Consensus 16 ~~~~~~~l~V~nL~~~~te~~L~~~f~~~G~i~~v~i~~~~tg~~~g~afV~f~~~~~a~~Ai~~l~~~~l~g~~----- 90 (192)
+....++|||+|||+++++++|+++|.+||.|..|.|+.+ +||||+|.+.++|++||+.||+..|+|+.
T Consensus 12 ~~r~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~------g~afV~f~~~~~a~~Ai~~l~g~~~~gr~~~~~~ 85 (115)
T 3beg_B 12 SRRSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD------GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAY 85 (115)
T ss_dssp -----CCEEEEECCSSCCTTHHHHHHGGGSCEEEEEECTT------SEEEEEESSHHHHHHHHHHHTTCBCCCTTSCCCB
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEecC------CEEEEEECCHHHHHHHHHHhCCCEECCcEeeeEE
Confidence 4456799999999999999999999999999999999754 89999999999999999999999999998
Q ss_pred EEEEEee
Q 029496 91 MKIEIIG 97 (192)
Q Consensus 91 i~V~~~~ 97 (192)
|+|+.+.
T Consensus 86 i~v~~~~ 92 (115)
T 3beg_B 86 IRVKVDG 92 (115)
T ss_dssp CEEEECC
T ss_pred EEeccCC
Confidence 5555544
No 104
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.79 E-value=6.1e-19 Score=121.09 Aligned_cols=83 Identities=23% Similarity=0.414 Sum_probs=75.4
Q ss_pred CCCCCCCCEEEEcCCCCCCCHHHHHHHhhhCCCeEEEEEEeCCCCCcceEEEEEEcCHHHHHHHHHHhCCCccCCceEEE
Q 029496 14 SSSIESGTKLYISNLEYGVSNEDIKELFSEVGELKRCSVHFDRSGRSKGTAEVVLTRRADAIAAVKRYNNVQLDGKPMKI 93 (192)
Q Consensus 14 ~~~~~~~~~l~V~nL~~~~te~~L~~~f~~~G~i~~v~i~~~~tg~~~g~afV~f~~~~~a~~Ai~~l~~~~l~g~~i~V 93 (192)
.....+.++|||+|||+.+++++|+++|.+||.|..|.+..+ ++||||+|.+.++|++|++.|++..|+|+.|+|
T Consensus 9 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~~~-----kg~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v 83 (99)
T 2cpj_A 9 EKTFTQRSRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHKD-----KGFGFIRLETRTLAEIAKVELDNMPLRGKQLRV 83 (99)
T ss_dssp SCCCCCTTEEEEESCCTTCCHHHHHHHTSTTCCCSEEEEETT-----TTEEEEECSSSHHHHHHHHHHTTCCBTTBCCEE
T ss_pred CCcCCCCCEEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEecC-----CCEEEEEECCHHHHHHHHHHhCCCEeCCceEEE
Confidence 345567789999999999999999999999999999999844 789999999999999999999999999999999
Q ss_pred EEeecCCC
Q 029496 94 EIIGTNIG 101 (192)
Q Consensus 94 ~~~~~~~~ 101 (192)
+++.++..
T Consensus 84 ~~a~~~~~ 91 (99)
T 2cpj_A 84 RFACHSAS 91 (99)
T ss_dssp EESSCCSC
T ss_pred EEcCCCCC
Confidence 99987544
No 105
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=99.79 E-value=4.6e-20 Score=124.43 Aligned_cols=82 Identities=23% Similarity=0.482 Sum_probs=72.9
Q ss_pred CEEEEcCCCCCCCHHHHHHHhhhCCCeEEEEEEeCC-CCCcceEEEEEEcCHHHHHHHHHHhCCCccCCceEEEEEeecC
Q 029496 21 TKLYISNLEYGVSNEDIKELFSEVGELKRCSVHFDR-SGRSKGTAEVVLTRRADAIAAVKRYNNVQLDGKPMKIEIIGTN 99 (192)
Q Consensus 21 ~~l~V~nL~~~~te~~L~~~f~~~G~i~~v~i~~~~-tg~~~g~afV~f~~~~~a~~Ai~~l~~~~l~g~~i~V~~~~~~ 99 (192)
++|||+|||.++++++|+++|++||.|..+.++.++ ++.+++||||+|.+.+ |++|+..|++..|+|+.|+|+++.+.
T Consensus 2 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~-a~~a~~~l~g~~~~g~~l~V~~a~~~ 80 (90)
T 2ki2_A 2 RNIYVGNLVYSATSEQVKELFSQFGKVFNVKLIYDRETKKPKGFGFVEMQEES-VSEAIAKLDNTDFMGRTIRVTEANPK 80 (90)
T ss_dssp EEEEEEEECTTSSHHHHTTTHHHHTCCSEEEECCCSSSCCCCEEEEEEECTTH-HHHHHHTSCSSCCSSSSCSEEEC---
T ss_pred cEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEEEcCCCCCcceEEEEEECCHH-HHHHHHHhCCCEECCeEEEEEEcCCC
Confidence 589999999999999999999999999999999998 8999999999999999 99999999999999999999999875
Q ss_pred CCCC
Q 029496 100 IGPP 103 (192)
Q Consensus 100 ~~~~ 103 (192)
....
T Consensus 81 ~~~~ 84 (90)
T 2ki2_A 81 KSLE 84 (90)
T ss_dssp ----
T ss_pred CCCC
Confidence 5443
No 106
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=1.1e-19 Score=129.97 Aligned_cols=84 Identities=18% Similarity=0.283 Sum_probs=75.0
Q ss_pred CCCCCCCEEEEcCCCCCCCHHHHHHHhhhCCCeEEEEEEeCC-CCCcceEEEEEEcCHHHHHHHHHHhCCCccCCceEEE
Q 029496 15 SSIESGTKLYISNLEYGVSNEDIKELFSEVGELKRCSVHFDR-SGRSKGTAEVVLTRRADAIAAVKRYNNVQLDGKPMKI 93 (192)
Q Consensus 15 ~~~~~~~~l~V~nL~~~~te~~L~~~f~~~G~i~~v~i~~~~-tg~~~g~afV~f~~~~~a~~Ai~~l~~~~l~g~~i~V 93 (192)
++....++|||+|||+++|+++|+++|.+||.|..+.++.+. +++++|||||+|.+.++|++||+ |++..|+|+.|.|
T Consensus 20 ~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~~~~~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i~V 98 (124)
T 1wel_A 20 SPHEAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALC-RHKQYMGNRFIQV 98 (124)
T ss_dssp SCCCCCCEEEEECCCTTCCHHHHHHHSCSSCBCTTTCEEEECTTSSEEEEEEEEBSSSHHHHHHHT-SCSBCSTTSCBEE
T ss_pred CCCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEECCCCCCCeEEEEEECCHHHHHHHHH-hCCCeECCcEEEE
Confidence 455677899999999999999999999999999885444444 99999999999999999999999 9999999999999
Q ss_pred EEeecC
Q 029496 94 EIIGTN 99 (192)
Q Consensus 94 ~~~~~~ 99 (192)
.++..+
T Consensus 99 ~~a~~~ 104 (124)
T 1wel_A 99 HPITKK 104 (124)
T ss_dssp EEECHH
T ss_pred EECCHH
Confidence 998653
No 107
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=1.2e-19 Score=127.78 Aligned_cols=89 Identities=27% Similarity=0.348 Sum_probs=75.7
Q ss_pred CCCCCCCEEEEcCCCCCCCHHHHHHHhhhCCCeEEEEEEeCC-CCCcceEEEEEEcCHHHHHHHHHHhCCCccCCceEEE
Q 029496 15 SSIESGTKLYISNLEYGVSNEDIKELFSEVGELKRCSVHFDR-SGRSKGTAEVVLTRRADAIAAVKRYNNVQLDGKPMKI 93 (192)
Q Consensus 15 ~~~~~~~~l~V~nL~~~~te~~L~~~f~~~G~i~~v~i~~~~-tg~~~g~afV~f~~~~~a~~Ai~~l~~~~l~g~~i~V 93 (192)
....+.++|||+|||+++|+++|+++|.+||.|..+.+..+. ++++++||||+|.+.++|++||+.|++..|.|+.|+|
T Consensus 20 ~~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v 99 (115)
T 2cpx_A 20 NPGEPNKVLYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRMMTGRMRGQAFITFPNKEIAWQALHLVNGYKLYGKILVI 99 (115)
T ss_dssp CCCSCCSEEEEECCCTTCCHHHHHHHTHHHHHSSSSCCEEEEECSSSCSEEEEECSSHHHHHHHHHHSTTCBCSSCBCEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCccceEEEEEcCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEE
Confidence 445577999999999999999999999999998433222222 7888999999999999999999999999999999999
Q ss_pred EEeecCCCCC
Q 029496 94 EIIGTNIGPP 103 (192)
Q Consensus 94 ~~~~~~~~~~ 103 (192)
+++.+.....
T Consensus 100 ~~a~~~~~~~ 109 (115)
T 2cpx_A 100 EFGKNKKQRS 109 (115)
T ss_dssp EECCCCSCCC
T ss_pred EEccCCCCCC
Confidence 9998765543
No 108
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=99.79 E-value=1.6e-19 Score=129.66 Aligned_cols=83 Identities=18% Similarity=0.291 Sum_probs=75.0
Q ss_pred CCCCCCCCEEEEcCCCCCCCHHHHHHHhhhCCCeE--EEEEEeCCCCCcceEEEEEEcCHHHHHHHHHHhCCCccCCceE
Q 029496 14 SSSIESGTKLYISNLEYGVSNEDIKELFSEVGELK--RCSVHFDRSGRSKGTAEVVLTRRADAIAAVKRYNNVQLDGKPM 91 (192)
Q Consensus 14 ~~~~~~~~~l~V~nL~~~~te~~L~~~f~~~G~i~--~v~i~~~~tg~~~g~afV~f~~~~~a~~Ai~~l~~~~l~g~~i 91 (192)
.....+.++|||+|||+++|+++|+++|++| .|. .|.|+.++.++++|||||+|.+.++|++||+. ++..|+|+.|
T Consensus 36 ~~~~~~~~~lfVgnLp~~~te~dL~~~F~~~-~i~~~~v~i~~d~~GrsrGfaFV~F~~~e~A~~Al~~-~~~~l~gR~I 113 (126)
T 2hgm_A 36 SADSANDGFVRLRGLPFGCTKEEIVQFFSGL-EIVPNGITLPVDPEGKITGEAFVQFASQELAEKALGK-HKERIGHRYI 113 (126)
T ss_dssp TTCSSSCCEEEEECCCTTCCHHHHHHHTTTS-CEEEEEEECCCCSSSSSCSEEEEEESSTTHHHHHHTT-TTCCBTTBCC
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHhcC-CceeeEEEEEECCCCCCceEEEEEECCHHHHHHHHHH-CCCEECCEEE
Confidence 3455677899999999999999999999999 677 89999998899999999999999999999975 7799999999
Q ss_pred EEEEeec
Q 029496 92 KIEIIGT 98 (192)
Q Consensus 92 ~V~~~~~ 98 (192)
.|..+..
T Consensus 114 ~V~~a~~ 120 (126)
T 2hgm_A 114 EVFKSSQ 120 (126)
T ss_dssp CCEEECH
T ss_pred EEEECCH
Confidence 9988754
No 109
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.79 E-value=1.8e-19 Score=126.40 Aligned_cols=81 Identities=12% Similarity=0.261 Sum_probs=74.5
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHhhhCCCeEEEEEEeCCCCCcceEEEEEEcCHHHHHHHHHHhCCCccCCceEEEEE
Q 029496 16 SIESGTKLYISNLEYGVSNEDIKELFSEVGELKRCSVHFDRSGRSKGTAEVVLTRRADAIAAVKRYNNVQLDGKPMKIEI 95 (192)
Q Consensus 16 ~~~~~~~l~V~nL~~~~te~~L~~~f~~~G~i~~v~i~~~~tg~~~g~afV~f~~~~~a~~Ai~~l~~~~l~g~~i~V~~ 95 (192)
...+.++|||+|||+.+|+++|+++|++| .|..|.|+.+++++++|||||+|.+.++|++|| .+++..|+++.|.|..
T Consensus 12 ~~~~~~~v~V~nLp~~~te~dl~~~F~~~-~v~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al-~~~~~~~~gr~i~V~~ 89 (109)
T 2dnn_A 12 INPDDLYVSVHGMPFSAMENDVRDFFHGL-RVDAVHLLKDHVGRNNGNGLVKFLSPQDTFEAL-KRNRMLMIQRYVEVSP 89 (109)
T ss_dssp CCHHHHEEEEECCCSSCCHHHHHHHTTTS-CCCEEEECCCTTCCCCSEEEEECSSHHHHHHHH-HTTTEEETTEEEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHhccC-CeeEEEEEECCCCCCCeEEEEEECCHHHHHHHH-hcCCCeECCeEEEEEE
Confidence 33455799999999999999999999999 899999999988999999999999999999999 6899999999999988
Q ss_pred eec
Q 029496 96 IGT 98 (192)
Q Consensus 96 ~~~ 98 (192)
+..
T Consensus 90 a~~ 92 (109)
T 2dnn_A 90 ATE 92 (109)
T ss_dssp CCH
T ss_pred CCc
Confidence 754
No 110
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.79 E-value=6e-19 Score=137.09 Aligned_cols=85 Identities=29% Similarity=0.312 Sum_probs=76.2
Q ss_pred CCCCCCCCEEEEcCCCCCCCHHHHHHHhhhCCCeEEEEEEeCC-CCCcceEEEEEEcCHHHHHHHHHHhCCCccCCceEE
Q 029496 14 SSSIESGTKLYISNLEYGVSNEDIKELFSEVGELKRCSVHFDR-SGRSKGTAEVVLTRRADAIAAVKRYNNVQLDGKPMK 92 (192)
Q Consensus 14 ~~~~~~~~~l~V~nL~~~~te~~L~~~f~~~G~i~~v~i~~~~-tg~~~g~afV~f~~~~~a~~Ai~~l~~~~l~g~~i~ 92 (192)
..+..+.++|||+|||+++|+++|+++|++||.|.+|.|+.|+ +++++|||||+|.+.++|++||+.+++..+.++.|+
T Consensus 9 ~~p~~p~~tlfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~~~~~~~~g~~i~ 88 (213)
T 4f02_A 9 SAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVR 88 (213)
T ss_dssp ------CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECE
T ss_pred CCCCCCCcEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEecccCCCCccccccceeCCHHHHHHHHHHhhhhhcCCcccc
Confidence 3455677899999999999999999999999999999999998 899999999999999999999999999999999999
Q ss_pred EEEeec
Q 029496 93 IEIIGT 98 (192)
Q Consensus 93 V~~~~~ 98 (192)
|.++..
T Consensus 89 ~~~~~~ 94 (213)
T 4f02_A 89 IMWSQR 94 (213)
T ss_dssp EEECCC
T ss_pred cccccc
Confidence 988764
No 111
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.79 E-value=7.4e-19 Score=118.61 Aligned_cols=80 Identities=25% Similarity=0.434 Sum_probs=73.3
Q ss_pred CCCCCCCEEEEcCCCCCCCHHHHHHHhhhCCCeEEEEEEeCCCCCcceEEEEEEcCHHHHHHHHHHhCCCccCCceEEEE
Q 029496 15 SSIESGTKLYISNLEYGVSNEDIKELFSEVGELKRCSVHFDRSGRSKGTAEVVLTRRADAIAAVKRYNNVQLDGKPMKIE 94 (192)
Q Consensus 15 ~~~~~~~~l~V~nL~~~~te~~L~~~f~~~G~i~~v~i~~~~tg~~~g~afV~f~~~~~a~~Ai~~l~~~~l~g~~i~V~ 94 (192)
....+.++|||+|||+++++++|+++|++||.|..|.|+ ++||||+|.+.++|++|++.|++..|+|+.|+|+
T Consensus 4 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~-------~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 76 (90)
T 2dnp_A 4 GSSGNTWKIFVGNVSAACTSQELRSLFERRGRVIECDVV-------KDYAFVHMEKEADAKAAIAQLNGKEVKGKRINVE 76 (90)
T ss_dssp CSSCCSCCEEEESCCTTCCHHHHHHHHHHHSCEEEEEEC-------SSCEEEEESCHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHcCCCEEEEEEE-------CCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEE
Confidence 355678899999999999999999999999999999987 4499999999999999999999999999999999
Q ss_pred EeecCCC
Q 029496 95 IIGTNIG 101 (192)
Q Consensus 95 ~~~~~~~ 101 (192)
++.+...
T Consensus 77 ~a~~~~~ 83 (90)
T 2dnp_A 77 LSTKGQK 83 (90)
T ss_dssp ESCCCCC
T ss_pred ECCCCCC
Confidence 9987533
No 112
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=99.79 E-value=2.5e-19 Score=119.91 Aligned_cols=74 Identities=22% Similarity=0.219 Sum_probs=70.1
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHhhhCCCeEEEEEEeCCCCCcceEEEEEEcCHHHHHHHHHHhCCCccCCceEEEEEee
Q 029496 19 SGTKLYISNLEYGVSNEDIKELFSEVGELKRCSVHFDRSGRSKGTAEVVLTRRADAIAAVKRYNNVQLDGKPMKIEIIG 97 (192)
Q Consensus 19 ~~~~l~V~nL~~~~te~~L~~~f~~~G~i~~v~i~~~~tg~~~g~afV~f~~~~~a~~Ai~~l~~~~l~g~~i~V~~~~ 97 (192)
.+..|||+||++.+||++|+++|.+||+|.++.+.. ++|||||+|.++++|++|++.||+..|.|+.|+|+++.
T Consensus 6 ~~~wL~VgNL~~~~te~~L~~lF~q~G~V~~~~l~~-----~kGfaFVey~~~~eA~~Ai~~Ln~~~l~gr~I~V~~A~ 79 (89)
T 2wbr_A 6 GSSWLLLKNLTAQIDGPTLRTLCMQHGPLVSFHPYL-----NQGIALCKYTTREEANKAQMALNNCVLANTTIFAESPS 79 (89)
T ss_dssp CCCEEEEECCCTTCCCHHHHHHHHHHSCEEEEEEET-----TTTEEEEEESSHHHHHHHHHHHTTEEETTEEEEEECCC
T ss_pred ccceEEEeCCCccCCHHHHHHHHHhhCCEEEEEEcC-----CCcEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEECC
Confidence 467999999999999999999999999999999874 58999999999999999999999999999999999984
No 113
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.79 E-value=9.9e-19 Score=119.58 Aligned_cols=81 Identities=14% Similarity=0.205 Sum_probs=73.9
Q ss_pred CCCCCCCEEEEcCCCCCCCHHHHHHHhhhCCCeEEEEEEeCCCCCcceEEEEEEcCHHHHHHHHHHhCCCccC--CceEE
Q 029496 15 SSIESGTKLYISNLEYGVSNEDIKELFSEVGELKRCSVHFDRSGRSKGTAEVVLTRRADAIAAVKRYNNVQLD--GKPMK 92 (192)
Q Consensus 15 ~~~~~~~~l~V~nL~~~~te~~L~~~f~~~G~i~~v~i~~~~tg~~~g~afV~f~~~~~a~~Ai~~l~~~~l~--g~~i~ 92 (192)
....+.++|||+|||+++++++|+++|++||.|..|.+..+ ++||||+|.+.++|++|++.|++..|. ++.|+
T Consensus 12 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~~~~~-----~g~afV~f~~~~~A~~A~~~l~g~~~~~~g~~l~ 86 (97)
T 1why_A 12 GKANPTTRLWVGGLGPNTSLAALAREFDRFGSIRTIDHVKG-----DSFAYIQYESLDAAQAACAKMRGFPLGGPDRRLR 86 (97)
T ss_dssp CCCCCCSCEEEECCCSSCCHHHHHHHHHTTSCEEEEEECSS-----SCCEEEEESSHHHHHHHHHHHTTCBCSSSSCBCE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeCC-----CCEEEEEECCHHHHHHHHHHHCCCEeCCCCcEEE
Confidence 35567789999999999999999999999999999988743 789999999999999999999999999 99999
Q ss_pred EEEeecCC
Q 029496 93 IEIIGTNI 100 (192)
Q Consensus 93 V~~~~~~~ 100 (192)
|++++++.
T Consensus 87 V~~a~~~~ 94 (97)
T 1why_A 87 VDFAKSGP 94 (97)
T ss_dssp EEECCCCC
T ss_pred EEECCCCC
Confidence 99998643
No 114
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=99.79 E-value=3.6e-19 Score=135.08 Aligned_cols=87 Identities=53% Similarity=0.944 Sum_probs=80.8
Q ss_pred CCCCCCCEEEEcCCCCCCCHHHHHHHhhhCCCeEEEEEEeCCCCCcceEEEEEEcCHHHHHHHHHHhCCCccCCceEEEE
Q 029496 15 SSIESGTKLYISNLEYGVSNEDIKELFSEVGELKRCSVHFDRSGRSKGTAEVVLTRRADAIAAVKRYNNVQLDGKPMKIE 94 (192)
Q Consensus 15 ~~~~~~~~l~V~nL~~~~te~~L~~~f~~~G~i~~v~i~~~~tg~~~g~afV~f~~~~~a~~Ai~~l~~~~l~g~~i~V~ 94 (192)
....+.++|||+|||+.+++++|+++|.+||.|..|.|+.++++.+++||||+|.+.++|++||+.|++..|+|+.|+|+
T Consensus 83 ~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~g~~kG~afV~F~~~~~A~~Ai~~lng~~l~Gr~l~V~ 162 (177)
T 2f3j_A 83 EGVETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDRSGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQ 162 (177)
T ss_dssp SSCTTCEEEEEECCCSCCCHHHHHHHHHHTSCCSEEEECCCTTSSCSCCEEEEESCHHHHHHHHHHSTTCBCSSSBCEEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCEeeEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 34566789999999999999999999999999999999999889999999999999999999999999999999999999
Q ss_pred EeecCCC
Q 029496 95 IIGTNIG 101 (192)
Q Consensus 95 ~~~~~~~ 101 (192)
++.....
T Consensus 163 ~a~~~~~ 169 (177)
T 2f3j_A 163 LVASQID 169 (177)
T ss_dssp EESSGGG
T ss_pred EecCCCC
Confidence 9976544
No 115
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=99.79 E-value=7.4e-19 Score=126.45 Aligned_cols=84 Identities=24% Similarity=0.354 Sum_probs=74.9
Q ss_pred CCCCCCCEEEEcCCCCCCCHHHHH----HHhhhCCCeEEEEEEeCCCCCcceEEEEEEcCHHHHHHHHHHhCCCccCCce
Q 029496 15 SSIESGTKLYISNLEYGVSNEDIK----ELFSEVGELKRCSVHFDRSGRSKGTAEVVLTRRADAIAAVKRYNNVQLDGKP 90 (192)
Q Consensus 15 ~~~~~~~~l~V~nL~~~~te~~L~----~~f~~~G~i~~v~i~~~~tg~~~g~afV~f~~~~~a~~Ai~~l~~~~l~g~~ 90 (192)
....+.++|||+|||+.+++++|+ ++|++||.|.+|.+. ++++++|||||+|.+.++|+.|++.||+..|.|+.
T Consensus 24 ~~~~p~~~LfV~nL~~~~~e~~L~~~L~~~F~~~G~I~~v~i~--~~~~~rG~aFV~F~~~~~A~~Ai~~lng~~l~gr~ 101 (127)
T 2a3j_A 24 PHTEPSQVVLITNINPEVPKEKLQALLYALASSQGDILDIVVD--LSDDNSGKAYIVFATQESAQAFVEAFQGYPFQGNP 101 (127)
T ss_dssp CCCSCCSEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEEC--CCCSSCCCEEEEESSHHHHHHHHHHSTTCCCTTSC
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHHHhccCCCeEEEEec--cCCCcCCEEEEEECCHHHHHHHHHHHCCCEeCCCE
Confidence 445678899999999999999876 699999999988774 46788999999999999999999999999999999
Q ss_pred EEEEEeecCC
Q 029496 91 MKIEIIGTNI 100 (192)
Q Consensus 91 i~V~~~~~~~ 100 (192)
|+|++++.+.
T Consensus 102 l~V~~a~~~~ 111 (127)
T 2a3j_A 102 LVITFSETPQ 111 (127)
T ss_dssp CEEEECCCCC
T ss_pred EEEEEccCcc
Confidence 9999997643
No 116
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=6.6e-19 Score=125.15 Aligned_cols=83 Identities=17% Similarity=0.169 Sum_probs=74.1
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHhhhCCCeEEEEEEeCCCCCcceEEEEEEcCHHHHHHHHHHhC--CCccCCceEEE
Q 029496 16 SIESGTKLYISNLEYGVSNEDIKELFSEVGELKRCSVHFDRSGRSKGTAEVVLTRRADAIAAVKRYN--NVQLDGKPMKI 93 (192)
Q Consensus 16 ~~~~~~~l~V~nL~~~~te~~L~~~f~~~G~i~~v~i~~~~tg~~~g~afV~f~~~~~a~~Ai~~l~--~~~l~g~~i~V 93 (192)
...+.++|||+|||+.+++++|+++|++||.|.+|.|+.+ ++||||+|++.++|++|++.|+ +..|.|++|.|
T Consensus 27 ~~~ps~~LfVgNLp~~vte~dL~~lF~~fG~V~~v~i~~~-----kG~AFVeF~~~e~A~~Ai~~l~~~~~~l~Gr~l~V 101 (119)
T 2ad9_A 27 AGVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG-----KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYI 101 (119)
T ss_dssp CSSCCSEEEEESCCTTCCHHHHHHHHTTTSCCCEEEEEGG-----GTEEEEECSCHHHHHHHHHHHHHHCCCBTTBCCEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhccCCceECCeEEEE
Confidence 4456789999999999999999999999999999999865 7999999999999999999887 46899999999
Q ss_pred EEeecCCCCC
Q 029496 94 EIIGTNIGPP 103 (192)
Q Consensus 94 ~~~~~~~~~~ 103 (192)
++++.+....
T Consensus 102 ~~a~~k~~~~ 111 (119)
T 2ad9_A 102 QFSNHKELKT 111 (119)
T ss_dssp EECSSSSCCC
T ss_pred EEccCCCCCc
Confidence 9998755543
No 117
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.79 E-value=1e-18 Score=119.55 Aligned_cols=82 Identities=16% Similarity=0.268 Sum_probs=72.8
Q ss_pred CCCCCCCEEEEcCCCCCCCHHHHHHHhhhCCCeEEEEEEeCCCCCcceEEEEEEcCHHHHHHHHHHhCCCccCCceEEEE
Q 029496 15 SSIESGTKLYISNLEYGVSNEDIKELFSEVGELKRCSVHFDRSGRSKGTAEVVLTRRADAIAAVKRYNNVQLDGKPMKIE 94 (192)
Q Consensus 15 ~~~~~~~~l~V~nL~~~~te~~L~~~f~~~G~i~~v~i~~~~tg~~~g~afV~f~~~~~a~~Ai~~l~~~~l~g~~i~V~ 94 (192)
......++|||+|||+++++++|+++|.+||.|. +.++.+ .+++||||+|.+.++|++|++.|++..|+|+.|+|+
T Consensus 14 ~~~~~~~~l~V~nL~~~~t~~~l~~~F~~~G~v~-~~~~~~---~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 89 (97)
T 2e5j_A 14 EGAPLAADVYVGNLPRDARVSDLKRALRELGSVP-LRLTWQ---GPRRRAFLHYPDSAAAQQAVSCLQGLRLGTDTLRVA 89 (97)
T ss_dssp SSSCCCCEEEEECCCTTCCHHHHHHHHHHTTCCC-SEEEEE---TTTTEEEEECSSHHHHHHHHHHHTTCCSSSSCCEEE
T ss_pred CCCCCCCEEEEeCCCCcCcHHHHHHHHHhcCCEE-EEEEcC---CCCcEEEEEECCHHHHHHHHHHhCCCEECCcEEEEE
Confidence 3455678999999999999999999999999986 566643 568999999999999999999999999999999999
Q ss_pred EeecCC
Q 029496 95 IIGTNI 100 (192)
Q Consensus 95 ~~~~~~ 100 (192)
++.++.
T Consensus 90 ~a~~~~ 95 (97)
T 2e5j_A 90 LARQQR 95 (97)
T ss_dssp ECCCCC
T ss_pred EcCCCC
Confidence 998643
No 118
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.79 E-value=6.5e-19 Score=117.44 Aligned_cols=80 Identities=20% Similarity=0.331 Sum_probs=72.8
Q ss_pred cCCCCCCCCEEEEcCCCCCCCHHHHHHHhhhCCCeEEEEEEeCCCCCcceEEEEEEcCHHHHHHHHHHh-CCCccCCceE
Q 029496 13 RSSSIESGTKLYISNLEYGVSNEDIKELFSEVGELKRCSVHFDRSGRSKGTAEVVLTRRADAIAAVKRY-NNVQLDGKPM 91 (192)
Q Consensus 13 ~~~~~~~~~~l~V~nL~~~~te~~L~~~f~~~G~i~~v~i~~~~tg~~~g~afV~f~~~~~a~~Ai~~l-~~~~l~g~~i 91 (192)
.++...+.++|||+|||.++++++|+++|.+||.|..|.++.+ ++||||+|.+.++|++|++.| ++..++|+.|
T Consensus 5 ~~~~~~~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~~~~~-----kg~afV~f~~~~~A~~a~~~l~~~~~~~g~~l 79 (85)
T 2ytc_A 5 SSGEDKTITTLYVGGLGDTITETDLRNHFYQFGEIRTITVVQR-----QQCAFIQFATRQAAEVAAEKSFNKLIVNGRRL 79 (85)
T ss_dssp CCCSCSSCCCEEEECCTTTSCHHHHHHHHHTTSCEEEEEEEGG-----GTEEEEEESSHHHHHHHHHTTTTTCEETTEEC
T ss_pred CCCCCCCccEEEEcCCCCCCCHHHHHHHHHhCCCEeEEEEECC-----CCEEEEEECCHHHHHHHHHHhcCCeeECCCEE
Confidence 3445567789999999999999999999999999999999853 789999999999999999988 9999999999
Q ss_pred EEEEee
Q 029496 92 KIEIIG 97 (192)
Q Consensus 92 ~V~~~~ 97 (192)
+|++++
T Consensus 80 ~v~~ak 85 (85)
T 2ytc_A 80 NVKWGR 85 (85)
T ss_dssp CEEECC
T ss_pred EEEecC
Confidence 999874
No 119
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=99.79 E-value=4.5e-19 Score=123.25 Aligned_cols=83 Identities=18% Similarity=0.273 Sum_probs=75.6
Q ss_pred CCCCCCEEEEcCCCCCC------CHHHHHHHhhhCCCeEEEEEEeCCCCCcceEEEEEEcCHHHHHHHHHHhCCCccCCc
Q 029496 16 SIESGTKLYISNLEYGV------SNEDIKELFSEVGELKRCSVHFDRSGRSKGTAEVVLTRRADAIAAVKRYNNVQLDGK 89 (192)
Q Consensus 16 ~~~~~~~l~V~nL~~~~------te~~L~~~f~~~G~i~~v~i~~~~tg~~~g~afV~f~~~~~a~~Ai~~l~~~~l~g~ 89 (192)
.....++|||+|||+.+ ++++|+++|++||.|..|.|+ ..+++++|||||+|.+.++|++|+..|++..|.|+
T Consensus 11 ~~~~~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~v~~v~i~-~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~~~g~ 89 (105)
T 2nlw_A 11 ADGIDSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYP-EEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQ 89 (105)
T ss_dssp CCSCCSEEEEESCCCCCTTTTTHHHHHHHHHHGGGSCEEEEECC-CBTTBSCCEEEEEECSSSHHHHHHHHCSSEECSTT
T ss_pred CCCCCCEEEEeCCCcchhhhhHHHHHHHHHHHhcCCCEEEEEee-CCCCCeeeEEEEEECCHHHHHHHHHHhCCcccCCC
Confidence 44557899999999999 789999999999999999888 34889999999999999999999999999999998
Q ss_pred -eEEEEEeecC
Q 029496 90 -PMKIEIIGTN 99 (192)
Q Consensus 90 -~i~V~~~~~~ 99 (192)
.|+|+++...
T Consensus 90 ~~l~V~~a~~~ 100 (105)
T 2nlw_A 90 HTFRVNLFTDF 100 (105)
T ss_dssp CEEEEECSCCC
T ss_pred ceEEEEEcchH
Confidence 9999998753
No 120
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=99.78 E-value=6.3e-20 Score=134.00 Aligned_cols=82 Identities=21% Similarity=0.378 Sum_probs=73.6
Q ss_pred CCCCCCCEEEEcCCCCCCCHHHHHHHhhhCCCeEEEEEEeCCCCCcceEEEEEEcCHHHHHHHHHHhCCCccCCceEEEE
Q 029496 15 SSIESGTKLYISNLEYGVSNEDIKELFSEVGELKRCSVHFDRSGRSKGTAEVVLTRRADAIAAVKRYNNVQLDGKPMKIE 94 (192)
Q Consensus 15 ~~~~~~~~l~V~nL~~~~te~~L~~~f~~~G~i~~v~i~~~~tg~~~g~afV~f~~~~~a~~Ai~~l~~~~l~g~~i~V~ 94 (192)
......++|||+|||+++|+++|+++|++|| |..|.|+.+++++++|||||+|.+.++|++|| .+++..|+++.|.|.
T Consensus 41 ~~~~~~~~lfV~nLp~~~te~dL~~~F~~~G-i~~v~i~~d~~g~srGfaFV~F~~~e~A~~Al-~~~g~~l~gR~i~V~ 118 (139)
T 2hgn_A 41 VQSTTGHCVHMRGLPYKATENDIYNFFSPLN-PVRVHIEIGPDGRVTGEADVEFATHEEAVAAM-SKDRANMQHRYIELF 118 (139)
T ss_dssp ----CCCCEECCSCCTTCCHHHHHHHHCSCC-CSEEECCCSSSSCSSCCCEEECSHHHHHHHHT-TCCSCSSSSCCCCCE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEECCCCCCceEEEEEeCCHHHHHHHH-hhCCCEECCEEEEEE
Confidence 3456678999999999999999999999999 77999999988999999999999999999999 789999999999998
Q ss_pred Eeec
Q 029496 95 IIGT 98 (192)
Q Consensus 95 ~~~~ 98 (192)
++..
T Consensus 119 ~a~~ 122 (139)
T 2hgn_A 119 LNST 122 (139)
T ss_dssp ECCC
T ss_pred ECCC
Confidence 8765
No 121
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=2.6e-18 Score=117.89 Aligned_cols=80 Identities=29% Similarity=0.430 Sum_probs=72.8
Q ss_pred CCCCCCCEEEEcCCCCCCCHHHHHHHhhhC--CCeEEEEEEeCCCCCcceEEEEEEcCHHHHHHHHHHhCCCccCCceEE
Q 029496 15 SSIESGTKLYISNLEYGVSNEDIKELFSEV--GELKRCSVHFDRSGRSKGTAEVVLTRRADAIAAVKRYNNVQLDGKPMK 92 (192)
Q Consensus 15 ~~~~~~~~l~V~nL~~~~te~~L~~~f~~~--G~i~~v~i~~~~tg~~~g~afV~f~~~~~a~~Ai~~l~~~~l~g~~i~ 92 (192)
....+.++|||+|||+++++++|+++|.+| |.|..|.+. ++||||+|.+.++|++|++.|++..|+|+.|+
T Consensus 10 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~g~v~~~~~~-------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 82 (99)
T 2cpd_A 10 DTMSSVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKKI-------RDYAFVHFSNREDAVEAMKALNGKVLDGSPIE 82 (99)
T ss_dssp SCSSCCCEEEEESCCTTCCHHHHHHHHHTTSTTCEEEEEEC-------SSEEEEEESSHHHHHHHHHHHSSEEETTEEEE
T ss_pred cccCCcCEEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEe-------CCeEEEEeCCHHHHHHHHHHhCCCEeCCcEEE
Confidence 455677899999999999999999999999 999998875 67999999999999999999999999999999
Q ss_pred EEEeecCCC
Q 029496 93 IEIIGTNIG 101 (192)
Q Consensus 93 V~~~~~~~~ 101 (192)
|+++++...
T Consensus 83 v~~a~~~~~ 91 (99)
T 2cpd_A 83 VTLAKPVDK 91 (99)
T ss_dssp EECCCCCCC
T ss_pred EEECCCCCC
Confidence 999986543
No 122
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.78 E-value=6.5e-20 Score=126.38 Aligned_cols=84 Identities=20% Similarity=0.186 Sum_probs=75.0
Q ss_pred CCCCCCCEEEEcCCCCCCCHHHHHHHhhhCCCeEEEEEEeCC-CCCcceEEEEEEcCHHHHHHHHHHhCCCccCCceEEE
Q 029496 15 SSIESGTKLYISNLEYGVSNEDIKELFSEVGELKRCSVHFDR-SGRSKGTAEVVLTRRADAIAAVKRYNNVQLDGKPMKI 93 (192)
Q Consensus 15 ~~~~~~~~l~V~nL~~~~te~~L~~~f~~~G~i~~v~i~~~~-tg~~~g~afV~f~~~~~a~~Ai~~l~~~~l~g~~i~V 93 (192)
....+.++|||+|||+++++++|+++|.+||.|.. .++.+. ++.++|||||+|.+.++|++||+ |++..|.|+.|+|
T Consensus 12 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~-~~~~~~~~g~~~g~afV~f~~~~~a~~A~~-l~g~~~~g~~l~V 89 (101)
T 1fj7_A 12 SESTTPFNLFIGNLNPNKSVAELKVAISELFAKND-LAVVDVRTGTNRKFGYVDFESAEDLEKALE-LTGLKVFGNEIKL 89 (101)
T ss_dssp TTCSCSEEEEEECCCTTSCHHHHHHHHHHHHHHHT-CCCCEEEEETTTTEEEEEESSHHHHHHHHH-GGGCCBTTBCCEE
T ss_pred ccCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcce-EEEecCCCCCcCcEEEEEECCHHHHHHHHh-cCCcEECCcEEEE
Confidence 34456789999999999999999999999998877 555665 78899999999999999999998 9999999999999
Q ss_pred EEeecCC
Q 029496 94 EIIGTNI 100 (192)
Q Consensus 94 ~~~~~~~ 100 (192)
+++.++.
T Consensus 90 ~~a~~~~ 96 (101)
T 1fj7_A 90 EKPKGRD 96 (101)
T ss_dssp ECCSCCC
T ss_pred EEcCCCC
Confidence 9997643
No 123
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=99.78 E-value=7.8e-19 Score=120.91 Aligned_cols=77 Identities=23% Similarity=0.324 Sum_probs=72.2
Q ss_pred CEEEEcCCCCCCCHHHHHHHhhhCCCeEEEEEEeCCCCCcceEEEEEEcCHHHHHHHHHHhCCCccCCceEEEEEeecCC
Q 029496 21 TKLYISNLEYGVSNEDIKELFSEVGELKRCSVHFDRSGRSKGTAEVVLTRRADAIAAVKRYNNVQLDGKPMKIEIIGTNI 100 (192)
Q Consensus 21 ~~l~V~nL~~~~te~~L~~~f~~~G~i~~v~i~~~~tg~~~g~afV~f~~~~~a~~Ai~~l~~~~l~g~~i~V~~~~~~~ 100 (192)
++|||+|||+++++++|+++|++||.|..|.++.+ +++||||+|.+.++|++|++.|++..|+|+.|+|+++.+..
T Consensus 1 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~----~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~~ 76 (101)
T 2hvz_A 1 MKVYVGNLGTGAGKGELERAFSYYGPLRTVWIARN----PPGFAFVEFEDPRDAEDAVRGLDGKVICGSRVRVELSTGMP 76 (101)
T ss_dssp CEEEEECCCSSCSHHHHHHHHHHHCCCSEEEEESS----SSSEEEEECSSHHHHHHHHHHHHHSCSSSCCCEEEESSSCC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC----CCCEEEEEECCHHHHHHHHHHHCCCeECCcEEEEEEccCCC
Confidence 58999999999999999999999999999999876 68999999999999999999999999999999999998754
Q ss_pred C
Q 029496 101 G 101 (192)
Q Consensus 101 ~ 101 (192)
.
T Consensus 77 ~ 77 (101)
T 2hvz_A 77 R 77 (101)
T ss_dssp C
T ss_pred C
Confidence 3
No 124
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=99.65 E-value=1.1e-20 Score=133.55 Aligned_cols=83 Identities=23% Similarity=0.468 Sum_probs=78.0
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHhhhCCCeEE--------EEEEeCC-CCCcceEEEEEEcCHHHHHHHHHHhCCCccC
Q 029496 17 IESGTKLYISNLEYGVSNEDIKELFSEVGELKR--------CSVHFDR-SGRSKGTAEVVLTRRADAIAAVKRYNNVQLD 87 (192)
Q Consensus 17 ~~~~~~l~V~nL~~~~te~~L~~~f~~~G~i~~--------v~i~~~~-tg~~~g~afV~f~~~~~a~~Ai~~l~~~~l~ 87 (192)
..+.++|||+|||+.+++++|+++|++||.|.. |.|+.++ ++.+++||||+|.+.++|++|++.|++..|.
T Consensus 4 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~ 83 (116)
T 2lcw_A 4 NSDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFS 83 (116)
Confidence 456789999999999999999999999999998 8999997 8999999999999999999999999999999
Q ss_pred CceEEEEEeecC
Q 029496 88 GKPMKIEIIGTN 99 (192)
Q Consensus 88 g~~i~V~~~~~~ 99 (192)
|+.|+|+++.++
T Consensus 84 g~~l~V~~a~~~ 95 (116)
T 2lcw_A 84 GNPIKVSFATRR 95 (116)
Confidence 999999998764
No 125
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=99.78 E-value=3.4e-19 Score=125.28 Aligned_cols=80 Identities=24% Similarity=0.296 Sum_probs=72.2
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHhhhCC-CeEEEEEEeCCCCCcceEEEEEEcCHHHHHHHHHHhCCCccCCceEEEE
Q 029496 16 SIESGTKLYISNLEYGVSNEDIKELFSEVG-ELKRCSVHFDRSGRSKGTAEVVLTRRADAIAAVKRYNNVQLDGKPMKIE 94 (192)
Q Consensus 16 ~~~~~~~l~V~nL~~~~te~~L~~~f~~~G-~i~~v~i~~~~tg~~~g~afV~f~~~~~a~~Ai~~l~~~~l~g~~i~V~ 94 (192)
.....++|||+|||+++++++|+++|++|| .|..+.|..+ .++|||||+|.+.++|++||+.|++..|+|+.|+|+
T Consensus 24 ~p~~~~~l~VgnLp~~~te~dL~~~F~~~G~~v~~v~i~~~---~~rGfaFV~F~~~e~A~~Ai~~lng~~l~Gr~i~V~ 100 (111)
T 2jvr_A 24 LPAKRYRITMKNLPEGCSWQDLKDLARENSLETTFSSVNTR---DFDGTGALEFPSEEILVEALERLNNIEFRGSVITVE 100 (111)
T ss_dssp -CCCCEEEEEECSSCCCCHHHHHHHHHHHTCCCSEEECSSC---SSSCCEEEEESSHHHHHHHHHHTTTEEETTEEEEEE
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHHhCCeeEEEEEEcC---CCCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEE
Confidence 345678999999999999999999999999 8999888532 478999999999999999999999999999999999
Q ss_pred Eeec
Q 029496 95 IIGT 98 (192)
Q Consensus 95 ~~~~ 98 (192)
++..
T Consensus 101 ~a~~ 104 (111)
T 2jvr_A 101 RDDN 104 (111)
T ss_dssp ESCC
T ss_pred ECCC
Confidence 9864
No 126
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=99.78 E-value=9e-19 Score=122.47 Aligned_cols=82 Identities=18% Similarity=0.336 Sum_probs=72.7
Q ss_pred ccCCCCCCCCEEEEcCCCCCCCHHHHHHHhhhCCCeEEEEEEeCCCCCcceEEEEEEcCHHHHHHHHHHhCCCccCCceE
Q 029496 12 ARSSSIESGTKLYISNLEYGVSNEDIKELFSEVGELKRCSVHFDRSGRSKGTAEVVLTRRADAIAAVKRYNNVQLDGKPM 91 (192)
Q Consensus 12 ~~~~~~~~~~~l~V~nL~~~~te~~L~~~f~~~G~i~~v~i~~~~tg~~~g~afV~f~~~~~a~~Ai~~l~~~~l~g~~i 91 (192)
.......+.++|||+|||+++++++|+++|++||.|..|.|+ ++||||+|.+.++|++|++.|++..|+|+.|
T Consensus 23 ~~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~-------kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l 95 (108)
T 2jvo_A 23 HRQEGELSNTRLFVRPFPLDVQESELNEIFGPFGPMKEVKIL-------NGFAFVEFEEAESAAKAIEEVHGKSFANQPL 95 (108)
T ss_dssp -----CCSCSEEEECSSCTTCCHHHHHHHHTTTSCCCEEEEE-------TTEEEEECSSHHHHHHHHHHHTTCEETTEEC
T ss_pred cccCCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEE-------CCEEEEEECCHHHHHHHHHHcCCCEECCeEE
Confidence 344556678999999999999999999999999999999987 7899999999999999999999999999999
Q ss_pred EEEEeecCC
Q 029496 92 KIEIIGTNI 100 (192)
Q Consensus 92 ~V~~~~~~~ 100 (192)
.|+++.+..
T Consensus 96 ~V~~a~~~~ 104 (108)
T 2jvo_A 96 EVVYSKLPA 104 (108)
T ss_dssp EEESCSCCC
T ss_pred EEEEecCCC
Confidence 999998644
No 127
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=8.5e-19 Score=118.94 Aligned_cols=80 Identities=28% Similarity=0.330 Sum_probs=71.1
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHhhhCCC-eEEEEEEeCCCCCcceEEEEEEcCHHHHHHHHHHhCC-CccCCceEEE
Q 029496 16 SIESGTKLYISNLEYGVSNEDIKELFSEVGE-LKRCSVHFDRSGRSKGTAEVVLTRRADAIAAVKRYNN-VQLDGKPMKI 93 (192)
Q Consensus 16 ~~~~~~~l~V~nL~~~~te~~L~~~f~~~G~-i~~v~i~~~~tg~~~g~afV~f~~~~~a~~Ai~~l~~-~~l~g~~i~V 93 (192)
...+.++|||+|||+++++++|+++|.+||. |..+.+. +++||||+|.+.++|++|++.|++ ..|+|+.|+|
T Consensus 4 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~vv~~~~~~------~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v 77 (93)
T 2cqh_A 4 GSSGMNKLYIGNLSPAVTADDLRQLFGDRKLPLAGQVLL------KSGYAFVDYPDQNWAIRAIETLSGKVELHGKIMEV 77 (93)
T ss_dssp CCCCCCCEEEECCCTTCCHHHHHHHHHHTTCCCSSCEEE------ETTEEEECCSCHHHHHHHHHHHTTTCEETTEECEE
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHHcCCceEEEEEc------CCCEEEEEECCHHHHHHHHHHccCCeeECCEEEEE
Confidence 4567789999999999999999999999999 6655553 478999999999999999999999 9999999999
Q ss_pred EEeecCCC
Q 029496 94 EIIGTNIG 101 (192)
Q Consensus 94 ~~~~~~~~ 101 (192)
+++.++..
T Consensus 78 ~~a~~~~~ 85 (93)
T 2cqh_A 78 DYSVSKKL 85 (93)
T ss_dssp EECCCCCC
T ss_pred EEccCccc
Confidence 99987544
No 128
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=99.78 E-value=1.9e-19 Score=125.56 Aligned_cols=83 Identities=14% Similarity=0.270 Sum_probs=77.3
Q ss_pred CCCCCCCEEEEcCCCCCCCHHHHHHHhhhCCC---eEEEEEEeCCCCCcceEEEEEEcCHHHHHHHHHHhCCCccCCceE
Q 029496 15 SSIESGTKLYISNLEYGVSNEDIKELFSEVGE---LKRCSVHFDRSGRSKGTAEVVLTRRADAIAAVKRYNNVQLDGKPM 91 (192)
Q Consensus 15 ~~~~~~~~l~V~nL~~~~te~~L~~~f~~~G~---i~~v~i~~~~tg~~~g~afV~f~~~~~a~~Ai~~l~~~~l~g~~i 91 (192)
......++|||+|||+++|+++|+++|..||. |..|.|+.++.++++|||||+|.+.++|++||+ +++..|+++.|
T Consensus 6 ~~~~~~~~l~V~nLp~~~te~~l~~~F~~~g~~~~v~~v~i~~~~~g~~~G~afV~F~~~~~a~~Al~-~~~~~~~gr~i 84 (107)
T 2lmi_A 6 EEVDDVFLIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNRDGKRRGDALIEMESEQDVQKALE-KHRMYMGQRYV 84 (107)
T ss_dssp CCCSSCCEEEEECCCSSCCSHHHHHHTTTSCBTTTTTTEECCCCTTSTTCSEEEEEBSSHHHHHHHHT-TTTCCSSSSCC
T ss_pred CCCCCccEEEEeCCCCCCCHHHHHHHHHhcCCcCCcceEEEEECCCCCEeeEEEEEECCHHHHHHHHH-hCcceeCCeEE
Confidence 45567889999999999999999999999988 899999999889999999999999999999998 99999999999
Q ss_pred EEEEeec
Q 029496 92 KIEIIGT 98 (192)
Q Consensus 92 ~V~~~~~ 98 (192)
.|.++.+
T Consensus 85 ~V~~a~~ 91 (107)
T 2lmi_A 85 EVYEINN 91 (107)
T ss_dssp CCEECCH
T ss_pred EEEECCH
Confidence 9998865
No 129
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=1.6e-18 Score=121.05 Aligned_cols=82 Identities=18% Similarity=0.263 Sum_probs=75.2
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHhhhCCCeEEEEEEeCCCCCcceEEEEEEcCHHHHHHHHHHhCCCccCCceEEEEE
Q 029496 16 SIESGTKLYISNLEYGVSNEDIKELFSEVGELKRCSVHFDRSGRSKGTAEVVLTRRADAIAAVKRYNNVQLDGKPMKIEI 95 (192)
Q Consensus 16 ~~~~~~~l~V~nL~~~~te~~L~~~f~~~G~i~~v~i~~~~tg~~~g~afV~f~~~~~a~~Ai~~l~~~~l~g~~i~V~~ 95 (192)
.....++|||+|||..+++++|+++|.+||.|..|.|+.+ ++||||+|.+.++|++|++.|++..|.|+.|+|++
T Consensus 21 ~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~-----~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 95 (109)
T 1x4g_A 21 SSPKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPE-----KGYSFVRFSTHESAAHAIVSVNGTTIEGHVVKCYW 95 (109)
T ss_dssp SCSSCCEEEEECCSSCCCHHHHHHHHHHHSCEEEEEEETT-----TTEEEEEESSHHHHHHHHHHHTTCEETTEECEEEC
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeCC-----CCEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEe
Confidence 4456789999999999999999999999999999999865 78999999999999999999999999999999999
Q ss_pred eecCCCC
Q 029496 96 IGTNIGP 102 (192)
Q Consensus 96 ~~~~~~~ 102 (192)
+++....
T Consensus 96 a~~~~~~ 102 (109)
T 1x4g_A 96 GKESPDM 102 (109)
T ss_dssp CCCCCSS
T ss_pred cCCCCCC
Confidence 9875543
No 130
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=99.78 E-value=1.8e-18 Score=118.58 Aligned_cols=81 Identities=20% Similarity=0.297 Sum_probs=71.5
Q ss_pred ccCCCCCCCCEEEEcCCCC-CCCHHHHHHHhhhCCCeEEEEEEeCCCCCcceEEEEEEcCHHHHHHHHHHhCCCccCCce
Q 029496 12 ARSSSIESGTKLYISNLEY-GVSNEDIKELFSEVGELKRCSVHFDRSGRSKGTAEVVLTRRADAIAAVKRYNNVQLDGKP 90 (192)
Q Consensus 12 ~~~~~~~~~~~l~V~nL~~-~~te~~L~~~f~~~G~i~~v~i~~~~tg~~~g~afV~f~~~~~a~~Ai~~l~~~~l~g~~ 90 (192)
.......+.++|||+|||+ ++++++|+++|++||.|..+.|. ++||||+|.+.++|++|++.|++..|+|+.
T Consensus 14 ~~~~~~~~~~~l~V~nLp~~~~t~~~L~~~F~~~G~v~~v~i~-------~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~ 86 (97)
T 2xnq_A 14 LVPRGSHMKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK-------NAFGFIQFDNPQSVRDAIEXESQEMNFGKK 86 (97)
T ss_dssp -----CCTTCEEEEESCCSSCCCHHHHHHHHGGGSCEEEEEEC-------SSEEEEEESSHHHHHHHHHHHTTSEETTEE
T ss_pred cccCCCCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe-------CCEEEEEECCHHHHHHHHHHcCCCEECCEE
Confidence 3445667789999999998 99999999999999999999883 789999999999999999999999999999
Q ss_pred EEEEEeecC
Q 029496 91 MKIEIIGTN 99 (192)
Q Consensus 91 i~V~~~~~~ 99 (192)
|+|++++..
T Consensus 87 l~V~~a~~~ 95 (97)
T 2xnq_A 87 LILEVSSSN 95 (97)
T ss_dssp CEEEECCCC
T ss_pred EEEEecCCC
Confidence 999998764
No 131
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.78 E-value=1.9e-18 Score=121.51 Aligned_cols=83 Identities=22% Similarity=0.254 Sum_probs=73.3
Q ss_pred CCCCCEEEEcCCCCC-CCHHHHHHHhhhCCCeEEEEEEeCCCCCcceEEEEEEcCHHHHHHHHHHhC--CCccCCceEEE
Q 029496 17 IESGTKLYISNLEYG-VSNEDIKELFSEVGELKRCSVHFDRSGRSKGTAEVVLTRRADAIAAVKRYN--NVQLDGKPMKI 93 (192)
Q Consensus 17 ~~~~~~l~V~nL~~~-~te~~L~~~f~~~G~i~~v~i~~~~tg~~~g~afV~f~~~~~a~~Ai~~l~--~~~l~g~~i~V 93 (192)
..+.++|||+|||++ +++++|+++|++||.|.+|.|+. .++||||+|.+.++|++|++.|+ ...|.|+.|.|
T Consensus 22 ~~p~~~l~V~NLp~~~~te~~L~~lF~~fG~V~~v~i~~-----~kg~aFVef~~~~~A~~Ai~~l~~~~~~l~Gr~l~V 96 (112)
T 1x4f_A 22 QELGRVIHLSNLPHSGYSDSAVLKLAEPYGKIKNYILMR-----MKSQAFIEMETREDAMAMVDHCLKKALWFQGRCVKV 96 (112)
T ss_dssp SCCCCEEEEESCCCSSCCSHHHHTTTTTTSCCSEEEEET-----TTTEEEEECSSHHHHHHHHHHHHHSCCCSSSSCCEE
T ss_pred CCCCCEEEEeCCCCccCCHHHHHHHHHhcCCEEEEEEec-----CCCEEEEEECCHHHHHHHHHHhccCCceECCEEEEE
Confidence 557889999999998 99999999999999999999973 47899999999999999999885 45699999999
Q ss_pred EEeecCCCCCC
Q 029496 94 EIIGTNIGPPA 104 (192)
Q Consensus 94 ~~~~~~~~~~~ 104 (192)
+++........
T Consensus 97 ~~a~~~~~~~~ 107 (112)
T 1x4f_A 97 DLSEKYKKLVS 107 (112)
T ss_dssp EEECSCSSSSC
T ss_pred EECcccccccc
Confidence 99987655433
No 132
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=99.77 E-value=1.3e-18 Score=118.83 Aligned_cols=80 Identities=21% Similarity=0.327 Sum_probs=71.6
Q ss_pred CCCCCCCEEEEcCCCC-CCCHHHHHHHhhhCCCeEEEEEEeCCCCCcceEEEEEEcCHHHHHHHHHHhCCCccCCceEEE
Q 029496 15 SSIESGTKLYISNLEY-GVSNEDIKELFSEVGELKRCSVHFDRSGRSKGTAEVVLTRRADAIAAVKRYNNVQLDGKPMKI 93 (192)
Q Consensus 15 ~~~~~~~~l~V~nL~~-~~te~~L~~~f~~~G~i~~v~i~~~~tg~~~g~afV~f~~~~~a~~Ai~~l~~~~l~g~~i~V 93 (192)
....+.++|||+|||+ ++++++|+++|++||.|..|.|. ++||||+|.+.++|++|++.|++..+.|+.|+|
T Consensus 5 ~~~~~~~~l~V~nlp~~~~t~~~l~~~F~~~G~v~~v~i~-------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V 77 (96)
T 2kvi_A 5 HNIPPKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK-------NAFGFIQFDNPQSVRDAIECESQEMNFGKKLIL 77 (96)
T ss_dssp ----CCEEEEEESSTTSCCCHHHHHHHHTTTCCCCEEEEE-------TTEEEEEESCHHHHHHHHHHHTCSSCBTTTBCE
T ss_pred ccCCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe-------CCEEEEEECCHHHHHHHHHHcCCCeeCCcEEEE
Confidence 3557789999999999 99999999999999999999985 789999999999999999999999999999999
Q ss_pred EEeecCCC
Q 029496 94 EIIGTNIG 101 (192)
Q Consensus 94 ~~~~~~~~ 101 (192)
+++.+...
T Consensus 78 ~~a~~~~~ 85 (96)
T 2kvi_A 78 EVSSSNAR 85 (96)
T ss_dssp EEEECCCC
T ss_pred EEcCcCCC
Confidence 99987544
No 133
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=99.77 E-value=3.9e-19 Score=121.38 Aligned_cols=83 Identities=24% Similarity=0.411 Sum_probs=74.6
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHH----HHhhhCCCeEEEEEEeCCCCCcceEEEEEEcCHHHHHHHHHHhCCCccCCceE
Q 029496 16 SIESGTKLYISNLEYGVSNEDIK----ELFSEVGELKRCSVHFDRSGRSKGTAEVVLTRRADAIAAVKRYNNVQLDGKPM 91 (192)
Q Consensus 16 ~~~~~~~l~V~nL~~~~te~~L~----~~f~~~G~i~~v~i~~~~tg~~~g~afV~f~~~~~a~~Ai~~l~~~~l~g~~i 91 (192)
...+.++|||+|||+++++++|+ ++|++||.|..|.+.. ++.+++||||+|.+.++|++|++.|++..|.|+.|
T Consensus 4 ~~~~~~~l~V~nLp~~~~~~~l~~~l~~~f~~~G~i~~v~i~~--~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l 81 (97)
T 1nu4_A 4 ETRPNHTIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSR--SLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPM 81 (97)
T ss_dssp --CCCSEEEEESCCTTSCHHHHHHHHHHHHGGGSCEEEEECCH--HHHHTTCEEEEESSHHHHHHHHHHHTTCEETTEEC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhCCCEEEEEEEc--CCCcCcEEEEEeCCHHHHHHHHHHhCCCEECCcEE
Confidence 45678999999999999999999 9999999999998863 56678999999999999999999999999999999
Q ss_pred EEEEeecCC
Q 029496 92 KIEIIGTNI 100 (192)
Q Consensus 92 ~V~~~~~~~ 100 (192)
+|+++.+..
T Consensus 82 ~v~~a~~~~ 90 (97)
T 1nu4_A 82 RIQYAKTDS 90 (97)
T ss_dssp EEEECSSCC
T ss_pred EEEEccCCC
Confidence 999998744
No 134
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=99.77 E-value=5.1e-19 Score=117.16 Aligned_cols=73 Identities=21% Similarity=0.332 Sum_probs=67.6
Q ss_pred CCEEEEcCCCCCC------CHHHHHHHhhhCCCeEEEEEEeCCCCCcceEEEEEEcCHHHHHHHHHHhCCCccCCc-eEE
Q 029496 20 GTKLYISNLEYGV------SNEDIKELFSEVGELKRCSVHFDRSGRSKGTAEVVLTRRADAIAAVKRYNNVQLDGK-PMK 92 (192)
Q Consensus 20 ~~~l~V~nL~~~~------te~~L~~~f~~~G~i~~v~i~~~~tg~~~g~afV~f~~~~~a~~Ai~~l~~~~l~g~-~i~ 92 (192)
+++|||+|||..+ ++++|+++|++||.|..+.|+ ..+++++|||||+|.+.++|++|++.|++..|+|+ +|+
T Consensus 1 ~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~i~~v~i~-~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~~l~ 79 (81)
T 2krb_A 1 DSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYP-EEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHTFR 79 (81)
T ss_dssp CCEEEEESCCCCCTTTHHHHHHHHHHHHHTTCCEEEEECC-CBTTBCCCEEEEEESSHHHHHHHHTTSSSCCCSSSSCCC
T ss_pred CCEEEEeCCCCCcHHHHHHHHHHHHHHHhhcCCeEEEEec-CCCCcEeEEEEEEECCHHHHHHHHHHhcCcccCCceeEE
Confidence 3789999999999 779999999999999999887 34889999999999999999999999999999999 887
Q ss_pred E
Q 029496 93 I 93 (192)
Q Consensus 93 V 93 (192)
|
T Consensus 80 V 80 (81)
T 2krb_A 80 V 80 (81)
T ss_dssp C
T ss_pred e
Confidence 6
No 135
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=99.77 E-value=2.8e-18 Score=120.80 Aligned_cols=81 Identities=25% Similarity=0.388 Sum_probs=74.5
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHhhhCCCeEEEEEEeCCCCCcceEEEEEEcCHHHHHHHHHHhCCCccCCceEEEEE
Q 029496 16 SIESGTKLYISNLEYGVSNEDIKELFSEVGELKRCSVHFDRSGRSKGTAEVVLTRRADAIAAVKRYNNVQLDGKPMKIEI 95 (192)
Q Consensus 16 ~~~~~~~l~V~nL~~~~te~~L~~~f~~~G~i~~v~i~~~~tg~~~g~afV~f~~~~~a~~Ai~~l~~~~l~g~~i~V~~ 95 (192)
+.++.++|||+|||+.+++++|+++|++||.|..|.|+.+. .++|||||+|.+.++|++|++.|++..|+|+.|.|++
T Consensus 4 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~--~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 81 (115)
T 3lqv_A 4 PPEVNRILYIRNLPYKITAEEMYDIFGKYGPIRQIRVGNTP--ETRGTAYVVYEDIFDAKNAVDHLSGFNVSNRYLVVLY 81 (115)
T ss_dssp CTTCCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEECST--TTTTCEEEEESSHHHHHHHHHHHTTCBSSSCBCEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCC--CCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEE
Confidence 34567899999999999999999999999999999998654 4589999999999999999999999999999999999
Q ss_pred eec
Q 029496 96 IGT 98 (192)
Q Consensus 96 ~~~ 98 (192)
+.+
T Consensus 82 a~~ 84 (115)
T 3lqv_A 82 YNA 84 (115)
T ss_dssp CCH
T ss_pred ecC
Confidence 875
No 136
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.76 E-value=6.5e-19 Score=126.05 Aligned_cols=81 Identities=15% Similarity=0.189 Sum_probs=74.4
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHhhhCCCe----EEEEEEeCCCCCcceEEEEEEcCHHHHHHHHHHhCCCccCCceEE
Q 029496 17 IESGTKLYISNLEYGVSNEDIKELFSEVGEL----KRCSVHFDRSGRSKGTAEVVLTRRADAIAAVKRYNNVQLDGKPMK 92 (192)
Q Consensus 17 ~~~~~~l~V~nL~~~~te~~L~~~f~~~G~i----~~v~i~~~~tg~~~g~afV~f~~~~~a~~Ai~~l~~~~l~g~~i~ 92 (192)
..+.++|||+|||+++|+++|+++|++||.| ..|.|+.+++++++|||||+|.+.++|++||+. ++..|.++.|.
T Consensus 20 ~~~~~~v~V~nLp~~~te~dl~~~F~~~g~v~g~v~~v~i~~d~~gr~~G~aFV~F~~~~~A~~Al~~-~~~~l~gR~i~ 98 (123)
T 2dha_A 20 KENQVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNALRK-HKDLLGKRYIE 98 (123)
T ss_dssp CCSCCEEEECSCCTTCCHHHHHHHHHTTSCCTTGGGGEEEEECTTSCEEEEEEECCSSHHHHHHHHTT-TTEESSSCEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhhCCccCCcceEEEEECCCCCEeeEEEEEECCHHHHHHHHHh-CCCeeCCeEEE
Confidence 4567899999999999999999999999875 689999988999999999999999999999986 99999999999
Q ss_pred EEEeec
Q 029496 93 IEIIGT 98 (192)
Q Consensus 93 V~~~~~ 98 (192)
|..+..
T Consensus 99 V~~a~~ 104 (123)
T 2dha_A 99 LFRSTA 104 (123)
T ss_dssp CEEECH
T ss_pred EEECCH
Confidence 988754
No 137
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=99.76 E-value=1.4e-18 Score=119.65 Aligned_cols=78 Identities=17% Similarity=0.202 Sum_probs=71.9
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHhhhCCCeEEEEEEeCCCCCcceEEEEEEcCHHHHHHHHHHhCCCccCCceEEEEE
Q 029496 16 SIESGTKLYISNLEYGVSNEDIKELFSEVGELKRCSVHFDRSGRSKGTAEVVLTRRADAIAAVKRYNNVQLDGKPMKIEI 95 (192)
Q Consensus 16 ~~~~~~~l~V~nL~~~~te~~L~~~f~~~G~i~~v~i~~~~tg~~~g~afV~f~~~~~a~~Ai~~l~~~~l~g~~i~V~~ 95 (192)
.....++|||+|||.++++++|+++|++||.|.++.+. ++++||||+|.+.++|++|++.|++..|+|+.|+|++
T Consensus 23 ~~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~~~-----~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 97 (101)
T 2la4_A 23 APPRVTTAYIGNIPHFATEADLIPLFQNFGFILDFKHY-----PEKGCCFIKYDTHEQAAVCIVALANFPFQGRNLRTGW 97 (101)
T ss_dssp SCSSCCEEEEESCCTTCCHHHHHHHHHTTSCCSEEEEE-----TTTTEEEEECSSHHHHHHHHHHHTTCEETTEECCCCB
T ss_pred CCCCCCEEEEcCCCcccCHHHHHHHHHhCCCEEEEEEe-----cCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEe
Confidence 34456899999999999999999999999999999987 3578999999999999999999999999999999998
Q ss_pred eec
Q 029496 96 IGT 98 (192)
Q Consensus 96 ~~~ 98 (192)
+++
T Consensus 98 a~~ 100 (101)
T 2la4_A 98 GKE 100 (101)
T ss_dssp CCC
T ss_pred ccC
Confidence 875
No 138
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.76 E-value=3.3e-18 Score=116.63 Aligned_cols=81 Identities=22% Similarity=0.334 Sum_probs=72.9
Q ss_pred CCCCCCCEEEEcCCCCCCCHHHHHHHhhhCCCeEEE-EEEeCC-CCCcceEEEEEEcCHHHHHHHHHHhCCCccCCceEE
Q 029496 15 SSIESGTKLYISNLEYGVSNEDIKELFSEVGELKRC-SVHFDR-SGRSKGTAEVVLTRRADAIAAVKRYNNVQLDGKPMK 92 (192)
Q Consensus 15 ~~~~~~~~l~V~nL~~~~te~~L~~~f~~~G~i~~v-~i~~~~-tg~~~g~afV~f~~~~~a~~Ai~~l~~~~l~g~~i~ 92 (192)
+.....++|||+|||+++++++|+++|.+||.|..| .|+.++ ++ .|||+|.+.++|++|++.|++..|+|+.|+
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~i~~~~~~~----~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~ 85 (96)
T 2e44_A 10 PKRQRIRKLQIRNIPPHLQWEVLDSLLVQYGVVESCEQVNTDSETA----VVNVTYSSKDQARQALDKLNGFQLENFTLK 85 (96)
T ss_dssp CCCCSCCCEEEEEECSSSCHHHHHHHHHHHSCEEEEEEECCSSSSE----EEEEEESSHHHHHHHHHHHTTCBCSSCBCE
T ss_pred CCCCCCCEEEEEcCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCC----EEEEEECCHHHHHHHHHHhCCCEECCcEEE
Confidence 344567899999999999999999999999999999 477776 43 399999999999999999999999999999
Q ss_pred EEEeecC
Q 029496 93 IEIIGTN 99 (192)
Q Consensus 93 V~~~~~~ 99 (192)
|+++.++
T Consensus 86 V~~a~~~ 92 (96)
T 2e44_A 86 VAYIPDE 92 (96)
T ss_dssp EEECCCC
T ss_pred EEEcCcc
Confidence 9999875
No 139
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=99.76 E-value=3.7e-18 Score=119.38 Aligned_cols=79 Identities=30% Similarity=0.452 Sum_probs=71.7
Q ss_pred CCCCCCEEEEcCCCCC-CCHHHHHHHhhhCCCeEEEEEEeCCCCCcceEEEEEEcCHHHHHHHHHHhCCCccCCceEEEE
Q 029496 16 SIESGTKLYISNLEYG-VSNEDIKELFSEVGELKRCSVHFDRSGRSKGTAEVVLTRRADAIAAVKRYNNVQLDGKPMKIE 94 (192)
Q Consensus 16 ~~~~~~~l~V~nL~~~-~te~~L~~~f~~~G~i~~v~i~~~~tg~~~g~afV~f~~~~~a~~Ai~~l~~~~l~g~~i~V~ 94 (192)
+....++|||+|||++ +++++|+++|.+||.|..|.| +++||||+|.+.++|++|++.|++..|+|+.|+|+
T Consensus 23 ~~~~~~~l~V~nl~~~~~t~~~l~~~F~~~G~v~~v~i-------~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~ 95 (110)
T 1wf1_A 23 PKSINSRVFIGNLNTALVKKSDVETIFSKYGRVAGCSV-------HKGYAFVQYSNERHARAAVLGENGRVLAGQTLDIN 95 (110)
T ss_dssp CTTCSSEEEECSCCCSSCCHHHHHHHHGGGSCCSEEEE-------ETTEEEEECSSSHHHHHHHHHHTTCEETTEECCEE
T ss_pred CCCCCcEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEE-------eCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEE
Confidence 3445589999999999 999999999999999999988 37899999999999999999999999999999999
Q ss_pred EeecCCC
Q 029496 95 IIGTNIG 101 (192)
Q Consensus 95 ~~~~~~~ 101 (192)
++.....
T Consensus 96 ~a~~~~~ 102 (110)
T 1wf1_A 96 MAGEPKP 102 (110)
T ss_dssp ESCCCCS
T ss_pred ECCCCCC
Confidence 9975433
No 140
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.76 E-value=2e-18 Score=121.30 Aligned_cols=80 Identities=24% Similarity=0.224 Sum_probs=72.9
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHhhhCCCeEEEEEEeCCCCCcceEEEEEEcCHHHHHHHHHHhCCCccCCceEEEEEee
Q 029496 18 ESGTKLYISNLEYGVSNEDIKELFSEVGELKRCSVHFDRSGRSKGTAEVVLTRRADAIAAVKRYNNVQLDGKPMKIEIIG 97 (192)
Q Consensus 18 ~~~~~l~V~nL~~~~te~~L~~~f~~~G~i~~v~i~~~~tg~~~g~afV~f~~~~~a~~Ai~~l~~~~l~g~~i~V~~~~ 97 (192)
...++|||+|||+.+++++|+++|.+||.|..|.|+. .++||||+|.+.++|++|++.||+..|.|+.|.|+++.
T Consensus 8 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~-----~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 82 (111)
T 1whx_A 8 RSKTVILAKNLPAGTLAAEIQETFSRFGSLGRVLLPE-----GGITAIVEFLEPLEARKAFRHLAYSKFHHVPLYLEWAP 82 (111)
T ss_dssp EEEEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCS-----SSSCEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeC-----CCCEEEEEeCCHHHHHHHHHHhCCCEECCeEEEEEECC
Confidence 3467999999999999999999999999999998863 47899999999999999999999999999999999998
Q ss_pred cCCCC
Q 029496 98 TNIGP 102 (192)
Q Consensus 98 ~~~~~ 102 (192)
.....
T Consensus 83 ~~~~~ 87 (111)
T 1whx_A 83 IGVFG 87 (111)
T ss_dssp TTTTC
T ss_pred CCccC
Confidence 75443
No 141
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=99.76 E-value=3.6e-19 Score=115.96 Aligned_cols=74 Identities=15% Similarity=0.346 Sum_probs=70.1
Q ss_pred EEEEcCCCCCCCHHHHHHHhhhCCCeEEEEEEeCC-CCCcceEEEEEEcCHHHHHHHHHHhCCCccCCceEEEEEe
Q 029496 22 KLYISNLEYGVSNEDIKELFSEVGELKRCSVHFDR-SGRSKGTAEVVLTRRADAIAAVKRYNNVQLDGKPMKIEII 96 (192)
Q Consensus 22 ~l~V~nL~~~~te~~L~~~f~~~G~i~~v~i~~~~-tg~~~g~afV~f~~~~~a~~Ai~~l~~~~l~g~~i~V~~~ 96 (192)
+|||+|||+++++++|+++|++||.|..+.++.++ ++.++|||||+|.+.++|++|++. ++..|+|+.|.|+++
T Consensus 1 ~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~-~~~~~~g~~l~v~~a 75 (75)
T 1iqt_A 1 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEK-KYHNVGLSKCEIKVA 75 (75)
T ss_dssp CEEESCCCSSCCHHHHHHHHHHHSCCSEECCCCSCCCSSSCCCEEEECSSSHHHHHHHTT-SSCCBTTBCCCEEEC
T ss_pred CEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCCEEEEEECCHHHHHHHHHh-CCCeECCEEEEEEEC
Confidence 58999999999999999999999999999999998 899999999999999999999974 889999999999875
No 142
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=99.76 E-value=8.7e-19 Score=120.86 Aligned_cols=85 Identities=19% Similarity=0.336 Sum_probs=77.0
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHhhhCCCeEEEEEEeCCCCCcceEEEEEEcCHHHHHHHHHHhCCCccCCceEEEEE
Q 029496 16 SIESGTKLYISNLEYGVSNEDIKELFSEVGELKRCSVHFDRSGRSKGTAEVVLTRRADAIAAVKRYNNVQLDGKPMKIEI 95 (192)
Q Consensus 16 ~~~~~~~l~V~nL~~~~te~~L~~~f~~~G~i~~v~i~~~~tg~~~g~afV~f~~~~~a~~Ai~~l~~~~l~g~~i~V~~ 95 (192)
.....++|||+|||+++++++|+++|++||.|..|.|+.+++++++|||||+|.+.++|++|++ ++..|+|+.|.|..
T Consensus 5 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~Ai~--~~~~~~g~~l~v~~ 82 (102)
T 2xs2_A 5 GKIMPNTVFVGGIDVRMDETEIRSFFARYGSVKEVKIITDRTGVSKGYGFVSFYNDVDVQKIVE--SQINFHGKKLKLGP 82 (102)
T ss_dssp CEEEEEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSCCCHHHHTT--CCCEETTEECEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECCCCCccceEEEEECCHHHHHHHHh--CCCeECCEEEEEEE
Confidence 3445689999999999999999999999999999999999989999999999999999999997 99999999999999
Q ss_pred eecCCCC
Q 029496 96 IGTNIGP 102 (192)
Q Consensus 96 ~~~~~~~ 102 (192)
+.+....
T Consensus 83 a~~~~~~ 89 (102)
T 2xs2_A 83 AIRKQNL 89 (102)
T ss_dssp EEECC--
T ss_pred CCcCcch
Confidence 8865443
No 143
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.76 E-value=6e-18 Score=115.06 Aligned_cols=80 Identities=16% Similarity=0.227 Sum_probs=70.2
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHhhhCCCeEEEEEEeCC-CCCcceEEEEEEcCHHHHHHHHHHhCCCccCCceEEEE
Q 029496 16 SIESGTKLYISNLEYGVSNEDIKELFSEVGELKRCSVHFDR-SGRSKGTAEVVLTRRADAIAAVKRYNNVQLDGKPMKIE 94 (192)
Q Consensus 16 ~~~~~~~l~V~nL~~~~te~~L~~~f~~~G~i~~v~i~~~~-tg~~~g~afV~f~~~~~a~~Ai~~l~~~~l~g~~i~V~ 94 (192)
.....++|||+|||+++++++|+++|.+||.|.+| +.++ +++ ||||+|.+.++|++||+ |++..|+|+.|.|+
T Consensus 4 ~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v--~~~~~~g~---~afV~f~~~~~a~~ai~-l~g~~~~g~~l~V~ 77 (94)
T 2e5g_A 4 GSSGLRSVFVSGFPRGVDSAQLSEYFLAFGPVASV--VMDKDKGV---FAIVEMGDVGAREAVLS-QSQHSLGGHRLRVR 77 (94)
T ss_dssp CCTTCCEEEEECCCTTCCHHHHHHHGGGTSCEEEE--EECSSSCC---EEEEEESSHHHHHHHHT-CSCCEETTEECCCB
T ss_pred ccCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEE--EEcCCCCc---EEEEEECCHHHHHHHHh-cCCeEECCEEEEEE
Confidence 34566899999999999999999999999999987 5555 654 99999999999999999 99999999999999
Q ss_pred EeecCCC
Q 029496 95 IIGTNIG 101 (192)
Q Consensus 95 ~~~~~~~ 101 (192)
++.....
T Consensus 78 ~a~~~~~ 84 (94)
T 2e5g_A 78 PREQKEF 84 (94)
T ss_dssp CSCCSCC
T ss_pred ECCcCCC
Confidence 8765443
No 144
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.75 E-value=1e-17 Score=129.38 Aligned_cols=87 Identities=22% Similarity=0.377 Sum_probs=80.8
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHhhhCCCeEEEEEEeCC-CCCcceEEEEEEcCHHHHHHHHHHhCCCccCCceEEEEEe
Q 029496 18 ESGTKLYISNLEYGVSNEDIKELFSEVGELKRCSVHFDR-SGRSKGTAEVVLTRRADAIAAVKRYNNVQLDGKPMKIEII 96 (192)
Q Consensus 18 ~~~~~l~V~nL~~~~te~~L~~~f~~~G~i~~v~i~~~~-tg~~~g~afV~f~~~~~a~~Ai~~l~~~~l~g~~i~V~~~ 96 (192)
...++|||+|||..+++++|+++|++||.|..|.|+.++ ++++++||||+|.+.++|++|++.|++..|+|+.|+|+++
T Consensus 123 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~i~V~~a 202 (216)
T 2qfj_A 123 RAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSATLARDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQYLRVGKA 202 (216)
T ss_dssp TTSCEEEEECCCTTCCHHHHHHHHTTSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCBCSSSBCEEEEC
T ss_pred CCCcEEEEeCCCCcCCHHHHHHHHhccCCeeEEEEEecCCCCCcCceEEEEecCHHHHHHHHHHccCCEeCCcEEEEEEe
Confidence 456899999999999999999999999999999999998 9999999999999999999999999999999999999999
Q ss_pred ecCCCCCC
Q 029496 97 GTNIGPPA 104 (192)
Q Consensus 97 ~~~~~~~~ 104 (192)
.+......
T Consensus 203 ~~~~~~~~ 210 (216)
T 2qfj_A 203 VTPPMPLL 210 (216)
T ss_dssp SSCSSTTS
T ss_pred cCCCCCCC
Confidence 87654433
No 145
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.75 E-value=1.2e-18 Score=118.75 Aligned_cols=82 Identities=22% Similarity=0.464 Sum_probs=73.2
Q ss_pred CCCCCCCEEEEcCCCCCCCHHHHHHHhhhCCCeEEEEEEeCCCCCcceEEEEEEcCHHHHHHHHHHhCCCccCCceEEEE
Q 029496 15 SSIESGTKLYISNLEYGVSNEDIKELFSEVGELKRCSVHFDRSGRSKGTAEVVLTRRADAIAAVKRYNNVQLDGKPMKIE 94 (192)
Q Consensus 15 ~~~~~~~~l~V~nL~~~~te~~L~~~f~~~G~i~~v~i~~~~tg~~~g~afV~f~~~~~a~~Ai~~l~~~~l~g~~i~V~ 94 (192)
....+.++|||+|||+.+++++|+++|.+||.|..+ ..++.++|||||+|.+.++|++|++.|++..|.|+.|.|+
T Consensus 11 ~~~~~~~~l~V~nL~~~~t~~~l~~~F~~~g~v~~~----~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 86 (96)
T 1fjc_A 11 KKVRAARTLLAKNLSFNITEDELKEVFEDALEIRLV----SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLY 86 (96)
T ss_dssp STTTGGGEEEEESCCSSCCHHHHHHHHCSEEEECCE----EETTEEEEEEEEEESSHHHHHHHHHHTTEEEETTEEEEEE
T ss_pred ccCCCCCEEEEeCCCCCCCHHHHHHHHhhCCcEEEe----CCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEE
Confidence 445677899999999999999999999999987665 2378889999999999999999999999999999999999
Q ss_pred EeecCC
Q 029496 95 IIGTNI 100 (192)
Q Consensus 95 ~~~~~~ 100 (192)
++.++.
T Consensus 87 ~a~~~~ 92 (96)
T 1fjc_A 87 YTGEKG 92 (96)
T ss_dssp ECSSSC
T ss_pred EcCCCC
Confidence 997643
No 146
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=99.75 E-value=6.4e-18 Score=124.45 Aligned_cols=82 Identities=23% Similarity=0.307 Sum_probs=75.4
Q ss_pred CCCCCCCCEEEEcCCCCCCCHHHHHHHhhhCCCeEEEEEEeCCCCCcceEEEEEEcCHHHHHHHHHHhCCCccCCceEEE
Q 029496 14 SSSIESGTKLYISNLEYGVSNEDIKELFSEVGELKRCSVHFDRSGRSKGTAEVVLTRRADAIAAVKRYNNVQLDGKPMKI 93 (192)
Q Consensus 14 ~~~~~~~~~l~V~nL~~~~te~~L~~~f~~~G~i~~v~i~~~~tg~~~g~afV~f~~~~~a~~Ai~~l~~~~l~g~~i~V 93 (192)
.....+.++|||+|||+++++++|+++|++||.|..|.|+.+ ++|||||+|.+.++|++|++.|++..|.|+.|+|
T Consensus 67 ~~~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~----~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 142 (150)
T 2i2y_A 67 RDSCPLDCKVYVGNLGNNGNKTELERAFGYYGPLRSVWVARN----PPGFAFVEFEDPRDAADAVRELDGRTLCGCRVRV 142 (150)
T ss_dssp SSSSTTSCEEEEESCCSCCSCHHHHHHHHHHSCEEEEEECSS----SCSEEEEEESSHHHHHHHHHHHSSSCSSSSCCEE
T ss_pred ccCCCCCCEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEeeC----CCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEE
Confidence 345567789999999999999999999999999999999866 5889999999999999999999999999999999
Q ss_pred EEeecC
Q 029496 94 EIIGTN 99 (192)
Q Consensus 94 ~~~~~~ 99 (192)
+++.++
T Consensus 143 ~~a~~~ 148 (150)
T 2i2y_A 143 ELSNGE 148 (150)
T ss_dssp EECCCC
T ss_pred EEcCCC
Confidence 998764
No 147
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=1.7e-17 Score=113.40 Aligned_cols=81 Identities=20% Similarity=0.256 Sum_probs=72.5
Q ss_pred CCCCCCCEEEEcCCCCCCCHHHHHHHhhhCCCeEEEEEEeCCCCCcceEEEEEEcCHHHHHHHHHHhCCCccCCceEEEE
Q 029496 15 SSIESGTKLYISNLEYGVSNEDIKELFSEVGELKRCSVHFDRSGRSKGTAEVVLTRRADAIAAVKRYNNVQLDGKPMKIE 94 (192)
Q Consensus 15 ~~~~~~~~l~V~nL~~~~te~~L~~~f~~~G~i~~v~i~~~~tg~~~g~afV~f~~~~~a~~Ai~~l~~~~l~g~~i~V~ 94 (192)
....+.++|||+|| ++++++|+++|.+||.|..|.|. .+++||||+|.+.++|++||+.|++..|+|+.|+|+
T Consensus 10 ~~~~~~~~l~V~n~--~~t~~~l~~~F~~~G~i~~v~i~-----~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~ 82 (97)
T 1x5p_A 10 RAPRKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD-----PPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVN 82 (97)
T ss_dssp CCCCCCSEEEEECS--SCCHHHHHHHHTTTSCEEEEEEE-----TTTTEEEEEESSHHHHHHHHHHTTTEEETTEEEEEE
T ss_pred CCCCCCCEEEEcCC--CCCHHHHHHHHhhCCCEEEEEec-----CCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEE
Confidence 34557789999996 89999999999999999999885 458899999999999999999999999999999999
Q ss_pred EeecCCCC
Q 029496 95 IIGTNIGP 102 (192)
Q Consensus 95 ~~~~~~~~ 102 (192)
++.++...
T Consensus 83 ~a~~~~~~ 90 (97)
T 1x5p_A 83 IARKQPML 90 (97)
T ss_dssp CCSSCCCC
T ss_pred ECCCCCCC
Confidence 99875443
No 148
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.75 E-value=1.5e-17 Score=123.01 Aligned_cols=83 Identities=25% Similarity=0.454 Sum_probs=78.5
Q ss_pred CCCCCCCEEEEcCCCCCCCHHHHHHHhhhCCCeEEEEEEeCC-CCCcceEEEEEEcCHHHHHHHHHHhCCCccCCceEEE
Q 029496 15 SSIESGTKLYISNLEYGVSNEDIKELFSEVGELKRCSVHFDR-SGRSKGTAEVVLTRRADAIAAVKRYNNVQLDGKPMKI 93 (192)
Q Consensus 15 ~~~~~~~~l~V~nL~~~~te~~L~~~f~~~G~i~~v~i~~~~-tg~~~g~afV~f~~~~~a~~Ai~~l~~~~l~g~~i~V 93 (192)
....+.++|||+|||..+++++|+++|++||.|..+.++.++ ++.++|||||+|.+.++|++|++.|++..|+|+.|+|
T Consensus 82 ~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v 161 (166)
T 3md3_A 82 SSSDDTFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRI 161 (166)
T ss_dssp CCCTTCEEEEEESCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEE
T ss_pred CCCCCCceEEECCCCCCCCHHHHHHHHhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCcEEEE
Confidence 345667899999999999999999999999999999999997 8999999999999999999999999999999999999
Q ss_pred EEee
Q 029496 94 EIIG 97 (192)
Q Consensus 94 ~~~~ 97 (192)
++++
T Consensus 162 ~~a~ 165 (166)
T 3md3_A 162 NWAA 165 (166)
T ss_dssp EESC
T ss_pred EecC
Confidence 9985
No 149
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.75 E-value=1.4e-17 Score=123.18 Aligned_cols=81 Identities=27% Similarity=0.466 Sum_probs=77.2
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHhhhCCCeEEEEEEeCC-CCCcceEEEEEEcCHHHHHHHHHHhCCCccCCceEEEEEee
Q 029496 19 SGTKLYISNLEYGVSNEDIKELFSEVGELKRCSVHFDR-SGRSKGTAEVVLTRRADAIAAVKRYNNVQLDGKPMKIEIIG 97 (192)
Q Consensus 19 ~~~~l~V~nL~~~~te~~L~~~f~~~G~i~~v~i~~~~-tg~~~g~afV~f~~~~~a~~Ai~~l~~~~l~g~~i~V~~~~ 97 (192)
+.++|||+|||+++++++|+++|++||.|..+.++.++ ++.+++||||+|.+.++|++|++.|++..+.++.|.|.++.
T Consensus 1 s~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~ 80 (167)
T 1fxl_A 1 SKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYAR 80 (167)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CcceEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCcceeEEEEEECCHHHHHHHHHHcCCCccCCceEEEEecC
Confidence 35899999999999999999999999999999999999 99999999999999999999999999999999999999987
Q ss_pred cC
Q 029496 98 TN 99 (192)
Q Consensus 98 ~~ 99 (192)
+.
T Consensus 81 ~~ 82 (167)
T 1fxl_A 81 PS 82 (167)
T ss_dssp CC
T ss_pred CC
Confidence 54
No 150
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=99.74 E-value=3.4e-18 Score=124.97 Aligned_cols=87 Identities=26% Similarity=0.383 Sum_probs=75.2
Q ss_pred CCCCCCCEEEEcCCCCCCCHHHHHHHhhhCCCeEEE------EEEeCCCCCcceEEEEEEcCHHHHHHHHHHhCCCccCC
Q 029496 15 SSIESGTKLYISNLEYGVSNEDIKELFSEVGELKRC------SVHFDRSGRSKGTAEVVLTRRADAIAAVKRYNNVQLDG 88 (192)
Q Consensus 15 ~~~~~~~~l~V~nL~~~~te~~L~~~f~~~G~i~~v------~i~~~~tg~~~g~afV~f~~~~~a~~Ai~~l~~~~l~g 88 (192)
....+.++|||+|||+++|+++|+++|.+||.|..+ .+....+++++|||||+|.+.++|++||..||+..|.|
T Consensus 40 ~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~di~~~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g 119 (143)
T 3egn_A 40 EPGEPNCRIYVKNLAKHVQEKDLKYIFGRYVDFSSETQRIMFDIRLMKEGRMKGQAFIGLPNEKAAAKALKEANGYVLFG 119 (143)
T ss_dssp CCCSCCSEEEEEEECTTCCHHHHHHHHGGGCCTTCHHHHHHCEEEEEEETTTEEEEEEECSSHHHHHHHHHHHTTBEETT
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcccccccceeeEEeccCCCcccEEEEEeCCHHHHHHHHHHhCCCEeCC
Confidence 445678999999999999999999999999988763 12222378899999999999999999999999999999
Q ss_pred ceEEEEEeecCCC
Q 029496 89 KPMKIEIIGTNIG 101 (192)
Q Consensus 89 ~~i~V~~~~~~~~ 101 (192)
+.|.|+++++...
T Consensus 120 ~~l~V~~a~~~~~ 132 (143)
T 3egn_A 120 KPMVVQFARSARP 132 (143)
T ss_dssp EECEEEECCCSCC
T ss_pred cEEEEEECCCCCC
Confidence 9999999976543
No 151
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=99.73 E-value=6e-18 Score=120.66 Aligned_cols=78 Identities=15% Similarity=0.186 Sum_probs=70.9
Q ss_pred CEEEEcCC----CCCCCHHHHHHHhhhCCCeEEEEEEeCC-CCCcceEEEEEEcC----HHH----HHHHHH--HhCCCc
Q 029496 21 TKLYISNL----EYGVSNEDIKELFSEVGELKRCSVHFDR-SGRSKGTAEVVLTR----RAD----AIAAVK--RYNNVQ 85 (192)
Q Consensus 21 ~~l~V~nL----~~~~te~~L~~~f~~~G~i~~v~i~~~~-tg~~~g~afV~f~~----~~~----a~~Ai~--~l~~~~ 85 (192)
+.|||+|| |+.+++++|+++|++||+|.++.++.|+ |+.++|||||+|.+ +++ |.+|+. .|++..
T Consensus 3 ~kI~VgnL~~~~~~~tte~~Lk~~Fs~fGeV~~~~li~Dp~Tg~slGfgfVef~d~~g~~d~a~kAA~kAi~~~~lng~~ 82 (136)
T 2j8a_A 3 CEIVVYPAQDSTTTNIQDISIKNYFKKYGEISHFEAFNDPNSALPLHVYLIKYASSDGKINDAAKAAFSAVRKHESSGCF 82 (136)
T ss_dssp CEEEEEESSSSCCCCCCHHHHHHHHHTTSCCSEEEEEECTTTCCEEEEEEEECC------CCHHHHHHHHHHHTTTTCEE
T ss_pred cEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCceeeEEEEEECCCCCCcchHHHHHHHHHHHhhhcCCe
Confidence 79999999 9999999999999999999999999999 99999999999995 333 788888 789999
Q ss_pred cCCceEEEEEeec
Q 029496 86 LDGKPMKIEIIGT 98 (192)
Q Consensus 86 l~g~~i~V~~~~~ 98 (192)
|+|+.|+|.+...
T Consensus 83 I~Gr~irV~ln~~ 95 (136)
T 2j8a_A 83 IMGFKFEVILNKH 95 (136)
T ss_dssp ETTEEEEEEECCT
T ss_pred ecCcEEEEEECcc
Confidence 9999999998754
No 152
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.73 E-value=1.4e-17 Score=123.69 Aligned_cols=83 Identities=25% Similarity=0.389 Sum_probs=78.1
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHhhhCCCeEEEEEEeCC-CCCcceEEEEEEcCHHHHHHHHHHhCCCccCCceEEEEEee
Q 029496 19 SGTKLYISNLEYGVSNEDIKELFSEVGELKRCSVHFDR-SGRSKGTAEVVLTRRADAIAAVKRYNNVQLDGKPMKIEIIG 97 (192)
Q Consensus 19 ~~~~l~V~nL~~~~te~~L~~~f~~~G~i~~v~i~~~~-tg~~~g~afV~f~~~~~a~~Ai~~l~~~~l~g~~i~V~~~~ 97 (192)
+.++|||+|||+++++++|+++|++||.|..+.++.++ ++.++|||||+|.+.++|++|++.|++..+.++.|.|.++.
T Consensus 2 ~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~ 81 (168)
T 1b7f_A 2 SNTNLIVNYLPQDMTDRELYALFRAIGPINTCRIMRDYKTGYSYGYAFVDFTSEMDSQRAIKVLNGITVRNKRLKVSYAR 81 (168)
T ss_dssp CCSEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEeCCCCccceEEEEEECCHHHHHHHHHhcCCCEeCCcEEEEEecC
Confidence 56899999999999999999999999999999999998 89999999999999999999999999999999999999987
Q ss_pred cCCC
Q 029496 98 TNIG 101 (192)
Q Consensus 98 ~~~~ 101 (192)
+...
T Consensus 82 ~~~~ 85 (168)
T 1b7f_A 82 PGGE 85 (168)
T ss_dssp CCSS
T ss_pred CCcc
Confidence 6543
No 153
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.73 E-value=3.5e-17 Score=124.70 Aligned_cols=85 Identities=26% Similarity=0.321 Sum_probs=80.0
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHhhhCCCeEEEEEEeCC-CCCcceEEEEEEcCHHHHHHHHHHhCCCccCCceEEEEE
Q 029496 17 IESGTKLYISNLEYGVSNEDIKELFSEVGELKRCSVHFDR-SGRSKGTAEVVLTRRADAIAAVKRYNNVQLDGKPMKIEI 95 (192)
Q Consensus 17 ~~~~~~l~V~nL~~~~te~~L~~~f~~~G~i~~v~i~~~~-tg~~~g~afV~f~~~~~a~~Ai~~l~~~~l~g~~i~V~~ 95 (192)
..+.++|||+|||+.+++++|+++|++||.|..+.+..++ ++.+++||||+|.+.++|++|++.|++..|+|+.|.|++
T Consensus 111 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 190 (198)
T 2yh0_A 111 PDSAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQR 190 (198)
T ss_dssp SCCCCEEEEECCCTTCCHHHHHHHHHTBSCEEEEEEEECTTTCSEEEEEEEEESSSSHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHcCCccEEEEeecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 3677999999999999999999999999999999999998 999999999999999999999999999999999999999
Q ss_pred eecCCC
Q 029496 96 IGTNIG 101 (192)
Q Consensus 96 ~~~~~~ 101 (192)
+.+...
T Consensus 191 a~~~~~ 196 (198)
T 2yh0_A 191 ASVGAK 196 (198)
T ss_dssp SCCCCC
T ss_pred CCCCCC
Confidence 987543
No 154
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=99.73 E-value=8.7e-18 Score=112.96 Aligned_cols=77 Identities=23% Similarity=0.423 Sum_probs=71.0
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHhhhCCCeEEEEEEeCCCCCcceEEEEEEcCHHHHHHHHHHhCCCccCCceEEEEEee
Q 029496 18 ESGTKLYISNLEYGVSNEDIKELFSEVGELKRCSVHFDRSGRSKGTAEVVLTRRADAIAAVKRYNNVQLDGKPMKIEIIG 97 (192)
Q Consensus 18 ~~~~~l~V~nL~~~~te~~L~~~f~~~G~i~~v~i~~~~tg~~~g~afV~f~~~~~a~~Ai~~l~~~~l~g~~i~V~~~~ 97 (192)
...++|||+|||+++++++|+++|.+| .|.++.|. +++|||||+|.+.++|++|++.|++..+.|+.|+|+++.
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~-~v~~~~i~-----~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~ 76 (88)
T 1wg1_A 3 SGSSGILVKNLPQDSNCQEVHDLLKDY-DLKYCYVD-----RNKRTAFVTLLNGEQAQNAIQMFHQYSFRGKDLIVQLQP 76 (88)
T ss_dssp CCCCCEEEESCCSSCCHHHHHHHTCSS-CCCCEEEE-----GGGTEEEECCSCHHHHHHHHHHHTTEEETTEEEEEEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhhC-CeEEEEEe-----CCCcEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEEcC
Confidence 456899999999999999999999999 99999884 568999999999999999999999999999999999986
Q ss_pred cCC
Q 029496 98 TNI 100 (192)
Q Consensus 98 ~~~ 100 (192)
...
T Consensus 77 ~~~ 79 (88)
T 1wg1_A 77 TDA 79 (88)
T ss_dssp CCC
T ss_pred CCc
Confidence 644
No 155
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=99.73 E-value=2.5e-17 Score=122.85 Aligned_cols=82 Identities=13% Similarity=0.163 Sum_probs=72.9
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHhhhCCCeEEEEEEeCCCCCcceEEEEEEcCHHHHHHHHHHhCCCccCC--ceEEE
Q 029496 16 SIESGTKLYISNLEYGVSNEDIKELFSEVGELKRCSVHFDRSGRSKGTAEVVLTRRADAIAAVKRYNNVQLDG--KPMKI 93 (192)
Q Consensus 16 ~~~~~~~l~V~nL~~~~te~~L~~~f~~~G~i~~v~i~~~~tg~~~g~afV~f~~~~~a~~Ai~~l~~~~l~g--~~i~V 93 (192)
+.....+|||+||++.+|+++|+++|++||.|.+|.|.... +++||||+|.+.++|++|++.|++..|.+ +.|+|
T Consensus 42 ~ps~vl~l~VgNL~~~vted~L~~~Fs~fG~V~~V~i~~k~---~rgfAFVeF~d~~~A~~Ai~~LnG~~i~g~g~~L~V 118 (164)
T 1sjr_A 42 GQSPVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKN---NQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRI 118 (164)
T ss_dssp CCCCEEEEEECSCCSCCCHHHHHHHHHHHSCEEEEEEEESS---SCEEEEEEESCHHHHHHHHHHSTTBCSSSSCSCEEE
T ss_pred CCCceEEEEEeCcCCCCCHHHHHHHHHhcCCEEEEEEEeCC---CCCEEEEEECCHHHHHHHHHHhCCCEecCCCcEEEE
Confidence 34455689999999999999999999999999999987542 47899999999999999999999999965 99999
Q ss_pred EEeecCC
Q 029496 94 EIIGTNI 100 (192)
Q Consensus 94 ~~~~~~~ 100 (192)
+++++..
T Consensus 119 ~~Ak~~~ 125 (164)
T 1sjr_A 119 DFSKLTS 125 (164)
T ss_dssp EECSSSS
T ss_pred EEecCCc
Confidence 9998754
No 156
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.73 E-value=3.9e-17 Score=110.37 Aligned_cols=79 Identities=19% Similarity=0.230 Sum_probs=68.5
Q ss_pred CCCCCE-EEEcCCCCCCCHHH----HHHHhhhC-CCeEEEEEEeCCCCCcceEEEEEEcCHHHHHHHHHHhCCCccCCce
Q 029496 17 IESGTK-LYISNLEYGVSNED----IKELFSEV-GELKRCSVHFDRSGRSKGTAEVVLTRRADAIAAVKRYNNVQLDGKP 90 (192)
Q Consensus 17 ~~~~~~-l~V~nL~~~~te~~----L~~~f~~~-G~i~~v~i~~~~tg~~~g~afV~f~~~~~a~~Ai~~l~~~~l~g~~ 90 (192)
..+..+ |||+|||+.+++++ |+++|.+| |.|.+| ++ |+|||+|.+.++|++|++.|++..|.|++
T Consensus 5 ~~p~~T~lYV~NL~~~~~~~~lk~~L~~lF~~yGG~Vl~V------tg---G~AfV~F~~~esA~~A~~~l~G~~l~gr~ 75 (96)
T 2diu_A 5 SSGCHTLLYVYNLPANKDGKSVSNRLRRLSDNCGGKVLSI------TG---CSAILRFINQDSAERAQKRMENEDVFGNR 75 (96)
T ss_dssp CCCSSEEEEEESCCTTSCHHHHHHHHHHHHHTTTCCEEEC------CT---TCEEEEESSHHHHHHHHHHHTTCCSSSSC
T ss_pred CCCcceEEEEeCCCCcCCHHHHHHHHHHHHHHcCCeeEEE------ec---CEEEEEECCHHHHHHHHHHhcCCccCCce
Confidence 344555 99999999999987 55899999 599887 23 89999999999999999999999999999
Q ss_pred EEEEEeecCCCCCC
Q 029496 91 MKIEIIGTNIGPPA 104 (192)
Q Consensus 91 i~V~~~~~~~~~~~ 104 (192)
|+|++++.+..--.
T Consensus 76 i~v~~A~~~sd~~~ 89 (96)
T 2diu_A 76 IIVSFTPKNRELCE 89 (96)
T ss_dssp CEEESSCCSCCCCC
T ss_pred EEEEecCCCcceeE
Confidence 99999988665443
No 157
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.73 E-value=2.1e-17 Score=125.71 Aligned_cols=85 Identities=24% Similarity=0.363 Sum_probs=77.8
Q ss_pred CCCCCCCCEEEEcCCCCCCCHHHHHHHhhhCCCeEEEEEEeCC-CCCcceEEEEEEcCHHHHHHHHHHhCCCccCCceEE
Q 029496 14 SSSIESGTKLYISNLEYGVSNEDIKELFSEVGELKRCSVHFDR-SGRSKGTAEVVLTRRADAIAAVKRYNNVQLDGKPMK 92 (192)
Q Consensus 14 ~~~~~~~~~l~V~nL~~~~te~~L~~~f~~~G~i~~v~i~~~~-tg~~~g~afV~f~~~~~a~~Ai~~l~~~~l~g~~i~ 92 (192)
+....+.++|||+|||+++|+++|+++|++||.|.+|.|+.++ ++.++|||||+|.+.++|++|++. ++..|.|+.|.
T Consensus 7 ~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~-~~~~~~g~~l~ 85 (196)
T 1l3k_A 7 PKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA-RPHKVDGRVVE 85 (196)
T ss_dssp -CCCGGGGEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHT-CSCEETTEECE
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEEcCCCCCccceEEEEeCCHHHHHHHHhc-CCCEECCEEee
Confidence 3456678899999999999999999999999999999999998 899999999999999999999975 89999999999
Q ss_pred EEEeecC
Q 029496 93 IEIIGTN 99 (192)
Q Consensus 93 V~~~~~~ 99 (192)
|.++...
T Consensus 86 v~~~~~~ 92 (196)
T 1l3k_A 86 PKRAVSR 92 (196)
T ss_dssp EEECCC-
T ss_pred eecccCc
Confidence 9998654
No 158
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=1.3e-17 Score=117.48 Aligned_cols=81 Identities=11% Similarity=0.088 Sum_probs=71.2
Q ss_pred CCCCCCEEEE--cCCCCCCCHHHHHHHhhhCCCeEEEEEEeCCCCCcceEEEEEEcCHHHHHHHHHHhCCCcc-----CC
Q 029496 16 SIESGTKLYI--SNLEYGVSNEDIKELFSEVGELKRCSVHFDRSGRSKGTAEVVLTRRADAIAAVKRYNNVQL-----DG 88 (192)
Q Consensus 16 ~~~~~~~l~V--~nL~~~~te~~L~~~f~~~G~i~~v~i~~~~tg~~~g~afV~f~~~~~a~~Ai~~l~~~~l-----~g 88 (192)
...+..+||| +||++++++++|+++|++||.|..|.|+. .++||||+|.+.++|++|++.||+..| .+
T Consensus 21 ~~~pt~~L~V~Ng~L~~~~te~~L~~~F~~fG~v~~v~i~~-----~rgfaFV~f~~~~~A~~Ai~~lnG~~~~~~lg~g 95 (114)
T 2cq2_A 21 VSYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPP-----NKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQK 95 (114)
T ss_dssp CSSCCSEEEEETCTGGGTCCHHHHHHHHHHHSCEEEEECCT-----TCSCEEEEESSHHHHHHHHHHTTTCEEECTTSCE
T ss_pred CCCCCCEEEEECCCCCCCCCHHHHHHHHHhcCCeEEEEEeC-----CCCEEEEEECCHHHHHHHHHHhCCCEEccccCCC
Confidence 4456789999 77999999999999999999999988763 378999999999999999999999988 68
Q ss_pred ceEEEEEeecCCC
Q 029496 89 KPMKIEIIGTNIG 101 (192)
Q Consensus 89 ~~i~V~~~~~~~~ 101 (192)
++|.|.++.....
T Consensus 96 ~~l~v~~a~~~p~ 108 (114)
T 2cq2_A 96 ITLYLNFVEKVQW 108 (114)
T ss_dssp EECEEEEESCCCC
T ss_pred cEEEEEecccCcc
Confidence 8999999975433
No 159
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.72 E-value=3.9e-17 Score=121.74 Aligned_cols=80 Identities=26% Similarity=0.348 Sum_probs=76.4
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHhhhCCCeEEEEEEeCC-CCCcceEEEEEEcCHHHHHHHHHHhCCCccCCceEEEEE
Q 029496 17 IESGTKLYISNLEYGVSNEDIKELFSEVGELKRCSVHFDR-SGRSKGTAEVVLTRRADAIAAVKRYNNVQLDGKPMKIEI 95 (192)
Q Consensus 17 ~~~~~~l~V~nL~~~~te~~L~~~f~~~G~i~~v~i~~~~-tg~~~g~afV~f~~~~~a~~Ai~~l~~~~l~g~~i~V~~ 95 (192)
....++|||+|||..+++++|+++|++||.|..+.++.++ ++.++|||||+|.+.++|++|++.|++..|+|+.|.|++
T Consensus 91 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 170 (172)
T 2g4b_A 91 LPGAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQR 170 (172)
T ss_dssp CTTTTCEEEECCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCSEEEEEEEEESSTTHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEEcCCCcCCHHHHHHHHHhcCCceEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHcCCCEECCeEEEEEe
Confidence 3457899999999999999999999999999999999998 999999999999999999999999999999999999998
Q ss_pred e
Q 029496 96 I 96 (192)
Q Consensus 96 ~ 96 (192)
+
T Consensus 171 A 171 (172)
T 2g4b_A 171 A 171 (172)
T ss_dssp C
T ss_pred C
Confidence 7
No 160
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.71 E-value=5.2e-17 Score=123.53 Aligned_cols=86 Identities=14% Similarity=0.269 Sum_probs=74.8
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHhhhCCCeEEEEEEeCC-CCCcceEEEEEEcCHHHHHHHHHHhCCCccCCceEEEE
Q 029496 16 SIESGTKLYISNLEYGVSNEDIKELFSEVGELKRCSVHFDR-SGRSKGTAEVVLTRRADAIAAVKRYNNVQLDGKPMKIE 94 (192)
Q Consensus 16 ~~~~~~~l~V~nL~~~~te~~L~~~f~~~G~i~~v~i~~~~-tg~~~g~afV~f~~~~~a~~Ai~~l~~~~l~g~~i~V~ 94 (192)
.....++|||+|||+++++++|+++|++||.|..|.|+.++ ++.++|||||+|.+.++|++|+.. ++..|+|+.|.|.
T Consensus 100 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~-~~~~~~G~~i~v~ 178 (196)
T 1l3k_A 100 AHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQ-KYHTVNGHNCEVR 178 (196)
T ss_dssp ---CCSEEEEECCTTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHC-SCCEETTEECEEE
T ss_pred cCCCcceEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCccceEEEEECCHHHHHHHHHh-CCcEECCEEEEEE
Confidence 34456899999999999999999999999999999999998 899999999999999999999976 7999999999999
Q ss_pred EeecCCCC
Q 029496 95 IIGTNIGP 102 (192)
Q Consensus 95 ~~~~~~~~ 102 (192)
++.++...
T Consensus 179 ~a~~k~~~ 186 (196)
T 1l3k_A 179 KALSKQEM 186 (196)
T ss_dssp ECC-----
T ss_pred ecCChhHh
Confidence 99876554
No 161
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.71 E-value=5.5e-17 Score=119.91 Aligned_cols=81 Identities=21% Similarity=0.308 Sum_probs=75.5
Q ss_pred CEEEEcCCCCCCCHHHHHHHhhhCCCeEEEEEEeCCCCCcceEEEEEEcCHHHHHHHHHHhCCCccCCceEEEEEeecCC
Q 029496 21 TKLYISNLEYGVSNEDIKELFSEVGELKRCSVHFDRSGRSKGTAEVVLTRRADAIAAVKRYNNVQLDGKPMKIEIIGTNI 100 (192)
Q Consensus 21 ~~l~V~nL~~~~te~~L~~~f~~~G~i~~v~i~~~~tg~~~g~afV~f~~~~~a~~Ai~~l~~~~l~g~~i~V~~~~~~~ 100 (192)
++|||+|||.++|+++|+++|++||.|.+|.|+.++++++++||||+|.+.++|++|++.|++..+.++.|.|.++....
T Consensus 1 R~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~~~~~~ 80 (166)
T 3md3_A 1 RVLYVGNLDKAITEDILKQYFQVGGPIANIKIMIDKNNKNVNYAFVEYHQSHDANIALQTLNGKQIENNIVKINWAFQSQ 80 (166)
T ss_dssp CEEEEEEEETTCCHHHHHHHHGGGSCEEEEEEECCCC-CCEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCCCC
T ss_pred CEEEECCCCCcCCHHHHHHHHHhcCCeEEEEEEECCCCCCCCEEEEEeCCHHHHHHHHHHcCCCccCCCeeEEEEcCCCC
Confidence 48999999999999999999999999999999999988899999999999999999999999999999999999987654
Q ss_pred C
Q 029496 101 G 101 (192)
Q Consensus 101 ~ 101 (192)
.
T Consensus 81 ~ 81 (166)
T 3md3_A 81 Q 81 (166)
T ss_dssp C
T ss_pred C
Confidence 3
No 162
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=99.71 E-value=5.2e-17 Score=116.85 Aligned_cols=83 Identities=13% Similarity=0.152 Sum_probs=72.3
Q ss_pred CCCCCCCEEEEcCCCCCCCHHHHHHHhhhCCCeEEEEEEeCCCCCcceE-EEEEEcCHHHHHHHHHHhCCCccCC--ceE
Q 029496 15 SSIESGTKLYISNLEYGVSNEDIKELFSEVGELKRCSVHFDRSGRSKGT-AEVVLTRRADAIAAVKRYNNVQLDG--KPM 91 (192)
Q Consensus 15 ~~~~~~~~l~V~nL~~~~te~~L~~~f~~~G~i~~v~i~~~~tg~~~g~-afV~f~~~~~a~~Ai~~l~~~~l~g--~~i 91 (192)
....+-..|||+||++.+|+++|+++|++||.|.+|.|+.. .++| |||+|.+.++|++|++.|++..|.+ +.|
T Consensus 23 ~~ps~VL~I~V~NL~~~vte~~L~~lFs~yG~V~~V~i~~~----~~gfqAFVef~~~~~A~~Ai~~LnG~~i~g~~~~L 98 (130)
T 3zzy_A 23 AGQSPVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTK----NNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTL 98 (130)
T ss_dssp --CCSEEEEEEESCCSCCCHHHHHHHHTTSSCEEEEEEEEE----TTEEEEEEEESCHHHHHHHHHHHTTCEEETTEEEE
T ss_pred CCCCceEEEEECCCCCCCCHHHHHHHHhCcCCEEEEEEEcC----CCCcEEEEEECCHHHHHHHHHHcCCCeecCCCcEE
Confidence 34455568889999999999999999999999999988753 3678 9999999999999999999999988 899
Q ss_pred EEEEeecCCC
Q 029496 92 KIEIIGTNIG 101 (192)
Q Consensus 92 ~V~~~~~~~~ 101 (192)
+|++++....
T Consensus 99 rI~~ak~~~l 108 (130)
T 3zzy_A 99 RIDFSKLTSL 108 (130)
T ss_dssp EEEECSCSSC
T ss_pred EEEecCCCce
Confidence 9999987543
No 163
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.71 E-value=1.4e-16 Score=118.15 Aligned_cols=81 Identities=26% Similarity=0.531 Sum_probs=76.2
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHhhhCCCeEEEEEEeCC-CCCcceEEEEEEcCHHHHHHHHHHhCCCccCC--ceEE
Q 029496 16 SIESGTKLYISNLEYGVSNEDIKELFSEVGELKRCSVHFDR-SGRSKGTAEVVLTRRADAIAAVKRYNNVQLDG--KPMK 92 (192)
Q Consensus 16 ~~~~~~~l~V~nL~~~~te~~L~~~f~~~G~i~~v~i~~~~-tg~~~g~afV~f~~~~~a~~Ai~~l~~~~l~g--~~i~ 92 (192)
...+.++|||+|||..+++++|+++|++||.|..+.++.++ ++.+++||||+|.+.++|++|++.|++..|.| ++|+
T Consensus 85 ~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~~~l~ 164 (168)
T 1b7f_A 85 ESIKDTNLYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDKLTGRPRGVAFVRYNKREEAQEAISALNNVIPEGGSQPLS 164 (168)
T ss_dssp STTTTCEEEEESCCTTCCHHHHHHHHTSSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCCCTTCSSCCE
T ss_pred ccCCCCCEEEeCCCCCCCHHHHHHhhhcCCcEEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhcCCEecCCCeEEE
Confidence 34567899999999999999999999999999999999998 99999999999999999999999999999988 9999
Q ss_pred EEEe
Q 029496 93 IEII 96 (192)
Q Consensus 93 V~~~ 96 (192)
|+++
T Consensus 165 V~~A 168 (168)
T 1b7f_A 165 VRLA 168 (168)
T ss_dssp EEEC
T ss_pred EEeC
Confidence 9875
No 164
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.70 E-value=6.3e-17 Score=113.95 Aligned_cols=78 Identities=18% Similarity=0.216 Sum_probs=66.9
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHhhhCCCeEEEEEEeCC-C---CCcceEEEEEEcCHHHHHHHHHHhCCCccCCceE
Q 029496 16 SIESGTKLYISNLEYGVSNEDIKELFSEVGELKRCSVHFDR-S---GRSKGTAEVVLTRRADAIAAVKRYNNVQLDGKPM 91 (192)
Q Consensus 16 ~~~~~~~l~V~nL~~~~te~~L~~~f~~~G~i~~v~i~~~~-t---g~~~g~afV~f~~~~~a~~Ai~~l~~~~l~g~~i 91 (192)
.....++|||+|||+++++++|+++|++||.|. +.++.+. + ++++|||||+|.+.++|++||+.|+ .++|+.|
T Consensus 4 ~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~-~~~~~~~~~~~~g~~~G~aFV~f~~~~~a~~Ai~~~~--~~~G~~~ 80 (114)
T 2dnl_A 4 GSSGSRKVFVGGLPPDIDEDEITASFRRFGPLV-VDWPHKAESKSYFPPKGYAFLLFQEESSVQALIDACL--EEDGKLY 80 (114)
T ss_dssp SSSCCCCEEEECCCTTCCHHHHHHHTTTTCCCC-EECTTSSSSCCCSCTTSEEEECCSSHHHHHHHHHHSE--EETTEEE
T ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCEE-EEEeecCCCCCCCCcccEEEEEECCHHHHHHHHHhhh--hcCCcEE
Confidence 445678999999999999999999999999999 8888777 5 7999999999999999999999883 3666666
Q ss_pred EEEEe
Q 029496 92 KIEII 96 (192)
Q Consensus 92 ~V~~~ 96 (192)
.+..+
T Consensus 81 ~~~~~ 85 (114)
T 2dnl_A 81 LCVSS 85 (114)
T ss_dssp EEECC
T ss_pred EeccC
Confidence 65543
No 165
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.70 E-value=1.3e-16 Score=114.06 Aligned_cols=76 Identities=21% Similarity=0.178 Sum_probs=67.9
Q ss_pred CEEEEcCCCCCCCHHHHHHHhhhCCCeEEEEEEeCCCCCcceE-EEEEEcCHHHHHHHHHHhCCCccCC--ceEEEEEee
Q 029496 21 TKLYISNLEYGVSNEDIKELFSEVGELKRCSVHFDRSGRSKGT-AEVVLTRRADAIAAVKRYNNVQLDG--KPMKIEIIG 97 (192)
Q Consensus 21 ~~l~V~nL~~~~te~~L~~~f~~~G~i~~v~i~~~~tg~~~g~-afV~f~~~~~a~~Ai~~l~~~~l~g--~~i~V~~~~ 97 (192)
..|||+||++.+++++|+++|++||.|.+|.|+.. .|| |||+|.+.++|+.|++.|++..|.+ +.|+|++++
T Consensus 26 l~l~V~NL~~~vt~~~L~~~Fs~yG~V~~v~i~~~-----~Gf~aFVef~~~~~A~~A~~~LnG~~i~g~~~~l~V~~Ak 100 (124)
T 2e5i_A 26 LLLSIQNPLYPITVDVLYTVCNPVGKVQRIVIFKR-----NGIQAMVEFESVLCAQKAKAALNGADIYAGCCTLKIEYAR 100 (124)
T ss_dssp EEEEEESCCSCCCHHHHHHHHTTTSCEEEEEEEES-----SSEEEEEEESSHHHHHHHHHHHTTCCCBTTBSEEEEECCS
T ss_pred EEEEEcCcCCCCCHHHHHHHHHhcCCEEEEEEEeC-----CCCEEEEEECCHHHHHHHHHHhCCCEecCCCeEEEEEEec
Confidence 45789999999999999999999999999998652 276 9999999999999999999999987 589999998
Q ss_pred cCCC
Q 029496 98 TNIG 101 (192)
Q Consensus 98 ~~~~ 101 (192)
+...
T Consensus 101 ~~~l 104 (124)
T 2e5i_A 101 PTRL 104 (124)
T ss_dssp CSCC
T ss_pred CCcc
Confidence 7643
No 166
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.70 E-value=6.3e-17 Score=125.60 Aligned_cols=80 Identities=23% Similarity=0.394 Sum_probs=74.3
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHhhhCCCeEEEEEEeCCCCCcceEEEEEEcCHHHHHHHHHHhCCCccCCceEEEEEeec
Q 029496 19 SGTKLYISNLEYGVSNEDIKELFSEVGELKRCSVHFDRSGRSKGTAEVVLTRRADAIAAVKRYNNVQLDGKPMKIEIIGT 98 (192)
Q Consensus 19 ~~~~l~V~nL~~~~te~~L~~~f~~~G~i~~v~i~~~~tg~~~g~afV~f~~~~~a~~Ai~~l~~~~l~g~~i~V~~~~~ 98 (192)
..++|||+|||+.+|+++|+++|++||.|..|.|+.++. .++|||||+|.+.++|++||+.||+..|+|+.|.|+++.+
T Consensus 102 ~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~~~i~~d~~-~~~g~~fV~f~~~~~a~~Ai~~lng~~~~g~~i~V~~a~~ 180 (213)
T 4f02_A 102 GVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDEN-GSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKS 180 (213)
T ss_dssp CTTEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETT-EEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred ccccceECCcccccHHHHHHHHHhhcCCeEEEEeeccCC-CCceEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEcCC
Confidence 457899999999999999999999999999999998863 3699999999999999999999999999999999999875
Q ss_pred C
Q 029496 99 N 99 (192)
Q Consensus 99 ~ 99 (192)
+
T Consensus 181 ~ 181 (213)
T 4f02_A 181 R 181 (213)
T ss_dssp H
T ss_pred C
Confidence 3
No 167
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.70 E-value=1.3e-16 Score=119.00 Aligned_cols=82 Identities=28% Similarity=0.447 Sum_probs=75.5
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHhhhCCCeEEEEEEeCCCCCcceEEEEEEcCHHHHHHHHHHhCCCccC---CceEE
Q 029496 16 SIESGTKLYISNLEYGVSNEDIKELFSEVGELKRCSVHFDRSGRSKGTAEVVLTRRADAIAAVKRYNNVQLD---GKPMK 92 (192)
Q Consensus 16 ~~~~~~~l~V~nL~~~~te~~L~~~f~~~G~i~~v~i~~~~tg~~~g~afV~f~~~~~a~~Ai~~l~~~~l~---g~~i~ 92 (192)
.....++|||+|||+.+|+++|+++|++||.|..+.++.++++.++|||||+|.+.++|++|++.|++..+. +++|.
T Consensus 91 ~~~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~~~l~ 170 (175)
T 3nmr_A 91 NAVEDRKLFIGMISKKCTENDIRVMFSSFGQIEECRILRGPDGLSRGCAFVTFTTRAMAQTAIKAMHQAQTMEGCSSPMV 170 (175)
T ss_dssp SCGGGSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTSCCCTTCSSCCE
T ss_pred ccCCCCeEEEcCCCCcCCHHHHHHHHHhCCCEEEEEEEECCCCCEEEEEEEEECCHHHHHHHHHHhcCCcccCCCCCCeE
Confidence 344678999999999999999999999999999999999998999999999999999999999999998876 48999
Q ss_pred EEEee
Q 029496 93 IEIIG 97 (192)
Q Consensus 93 V~~~~ 97 (192)
|.++.
T Consensus 171 V~~ad 175 (175)
T 3nmr_A 171 VKFAD 175 (175)
T ss_dssp EEECC
T ss_pred EEecC
Confidence 99873
No 168
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=99.70 E-value=4.2e-17 Score=108.93 Aligned_cols=73 Identities=21% Similarity=0.487 Sum_probs=67.0
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHhhhC----C-------CeEEEEEEeCCCCCcceEEEEEEcCHHHHHHHHHHhCCCc
Q 029496 17 IESGTKLYISNLEYGVSNEDIKELFSEV----G-------ELKRCSVHFDRSGRSKGTAEVVLTRRADAIAAVKRYNNVQ 85 (192)
Q Consensus 17 ~~~~~~l~V~nL~~~~te~~L~~~f~~~----G-------~i~~v~i~~~~tg~~~g~afV~f~~~~~a~~Ai~~l~~~~ 85 (192)
..+.++|||+|||+++++++|+++|++| | .|.++.+..+ ++||||+|.+.++|++|+ .|++..
T Consensus 3 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~~~~~g~~~~~~~~v~~~~~~~~-----kg~afV~f~~~~~a~~A~-~l~g~~ 76 (87)
T 2hzc_A 3 LGSARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQD-----KNFAFLEFRSVDETTQAM-AFDGII 76 (87)
T ss_dssp SGGGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEECSS-----SSEEEEEESSHHHHHHHG-GGTTCE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHhhhcccccCCCCcceEEEecCC-----CcEEEEEcCCHHHHHHHH-hcCCCE
Confidence 3567899999999999999999999999 8 8999988744 789999999999999999 999999
Q ss_pred cCCceEEEEE
Q 029496 86 LDGKPMKIEI 95 (192)
Q Consensus 86 l~g~~i~V~~ 95 (192)
|+|+.|+|+.
T Consensus 77 ~~g~~l~V~r 86 (87)
T 2hzc_A 77 FQGQSLKIRR 86 (87)
T ss_dssp ETTEECEEEC
T ss_pred ECCeEEEEeC
Confidence 9999999873
No 169
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.69 E-value=3.7e-17 Score=121.35 Aligned_cols=80 Identities=15% Similarity=0.321 Sum_probs=75.6
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHhhhCCCeEEEEEEeCC-CCCcceEEEEEEcCHHHHHHHHHHhCCCccCCceEEEEEee
Q 029496 19 SGTKLYISNLEYGVSNEDIKELFSEVGELKRCSVHFDR-SGRSKGTAEVVLTRRADAIAAVKRYNNVQLDGKPMKIEIIG 97 (192)
Q Consensus 19 ~~~~l~V~nL~~~~te~~L~~~f~~~G~i~~v~i~~~~-tg~~~g~afV~f~~~~~a~~Ai~~l~~~~l~g~~i~V~~~~ 97 (192)
+.++|||+|||+.+++++|+++|++||.|..+.++.++ ++.++|||||+|.+.++|++|++ +++..|+|+.|.|+++.
T Consensus 86 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~i~V~~a~ 164 (167)
T 2cjk_A 86 KTGKIFVGGIGPDVRPKEFEEFFSQWGTIIDAQLMLDKDTGQSRGFGFVTYDSADAVDRVCQ-NKFIDFKDRKIEIKRAE 164 (167)
T ss_dssp HCEEEEEEEECTTCCHHHHHHHHHTTSCCSEEECCCSSSSSTTSEEEEEEESSHHHHHHHHH-CSEECSSSSCEEEEECC
T ss_pred CCCeEEECCCCCCCCHHHHHHHHHhCccEEEEEEEEcCCCCccceEEEEEECCHHHHHHHHh-CCCEEeCCeEEEEeecC
Confidence 45799999999999999999999999999999999998 89999999999999999999997 89999999999999987
Q ss_pred cC
Q 029496 98 TN 99 (192)
Q Consensus 98 ~~ 99 (192)
++
T Consensus 165 pk 166 (167)
T 2cjk_A 165 PR 166 (167)
T ss_dssp CC
T ss_pred CC
Confidence 64
No 170
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=99.69 E-value=7.8e-17 Score=108.72 Aligned_cols=77 Identities=14% Similarity=0.229 Sum_probs=62.3
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHhhhCCCeEEEEEEeCCCCCcceEEEEEEcCHHHHHHHHHHhCCCc--cCCceEEE
Q 029496 16 SIESGTKLYISNLEYGVSNEDIKELFSEVGELKRCSVHFDRSGRSKGTAEVVLTRRADAIAAVKRYNNVQ--LDGKPMKI 93 (192)
Q Consensus 16 ~~~~~~~l~V~nL~~~~te~~L~~~f~~~G~i~~v~i~~~~tg~~~g~afV~f~~~~~a~~Ai~~l~~~~--l~g~~i~V 93 (192)
...+.++|||+|||+++|+++|+++|++||.|.+|.|+.+ ++|||||+|.+.++|++ +++.. +.++.|.|
T Consensus 7 ~~~~~~~l~V~~Lp~~~te~~L~~~F~~~G~i~~v~i~~~----srGfaFV~F~~~~~A~~----~~~~~~~~~g~~v~v 78 (89)
T 3d2w_A 7 HHHHGSKVFVGRCTEDMTAEELQQFFCQYGEVVDVFIPKP----FRAFAFVTFADDKVAQS----LCGEDLIIKGISVHI 78 (89)
T ss_dssp ----CCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCSS----CCSEEEEEESCHHHHHH----HTTCEEEETTEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEeeC----CCCEEEEEECCHHHHHH----HcCCCcccCCEEEEE
Confidence 4567789999999999999999999999999999999864 68999999999999984 45545 56899999
Q ss_pred EEeecCC
Q 029496 94 EIIGTNI 100 (192)
Q Consensus 94 ~~~~~~~ 100 (192)
.++.++.
T Consensus 79 ~~a~~k~ 85 (89)
T 3d2w_A 79 SNAEPKH 85 (89)
T ss_dssp EECC---
T ss_pred EEcCCCC
Confidence 9987643
No 171
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=99.69 E-value=1.1e-16 Score=114.07 Aligned_cols=80 Identities=20% Similarity=0.269 Sum_probs=71.6
Q ss_pred CCCCCCCEEEEcCCCCCCCHHHHHHHhhhCCCeEEEEEEeCCCCCcceEEEEEEcCHHHHHHHHHHhCCCccCCceEEEE
Q 029496 15 SSIESGTKLYISNLEYGVSNEDIKELFSEVGELKRCSVHFDRSGRSKGTAEVVLTRRADAIAAVKRYNNVQLDGKPMKIE 94 (192)
Q Consensus 15 ~~~~~~~~l~V~nL~~~~te~~L~~~f~~~G~i~~v~i~~~~tg~~~g~afV~f~~~~~a~~Ai~~l~~~~l~g~~i~V~ 94 (192)
....+.++|||+|| ++++++|+++|++||.|..|.|. .+++||||+|.+.++|++||+.|++..|.|+.|.|+
T Consensus 34 ~~~~~~~~lfVgnl--~~te~~L~~~F~~~G~I~~v~i~-----~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~V~ 106 (121)
T 2bz2_A 34 RAPRKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD-----PPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVN 106 (121)
T ss_dssp -CCCCCCEEEEECS--SCCHHHHHHHHSTTCCCSCEEEE-----TTTTEEEEECSSHHHHHHHHHHHTTCBCSSCBCEEE
T ss_pred CCCCCCCEEEEcCC--CCCHHHHHHHHHccCCEEEEEEe-----CCCCEEEEEECCHHHHHHHHHHhCCCEECCeEEEEE
Confidence 34467789999996 69999999999999999999886 458899999999999999999999999999999999
Q ss_pred EeecCCC
Q 029496 95 IIGTNIG 101 (192)
Q Consensus 95 ~~~~~~~ 101 (192)
++.+...
T Consensus 107 ~a~~~~~ 113 (121)
T 2bz2_A 107 IARKQPM 113 (121)
T ss_dssp ECCSSCC
T ss_pred EeCCCCC
Confidence 9987544
No 172
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.69 E-value=1e-16 Score=123.67 Aligned_cols=81 Identities=22% Similarity=0.395 Sum_probs=73.5
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHhhhCCCeEEEEEEeCC-CCCcceEEEEEEcCHHHHHHHHHHhCCCccCCceEEEEEe
Q 029496 18 ESGTKLYISNLEYGVSNEDIKELFSEVGELKRCSVHFDR-SGRSKGTAEVVLTRRADAIAAVKRYNNVQLDGKPMKIEII 96 (192)
Q Consensus 18 ~~~~~l~V~nL~~~~te~~L~~~f~~~G~i~~v~i~~~~-tg~~~g~afV~f~~~~~a~~Ai~~l~~~~l~g~~i~V~~~ 96 (192)
.+.++|||+|||.++|+++|+++|++||.|..|.|+.++ ++.+++||||+|.+.++|++|++.|++..|.++.|.|.++
T Consensus 26 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~~ 105 (216)
T 2qfj_A 26 AIMSRVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKVGRP 105 (216)
T ss_dssp HHHTEEEEECCCTTCCHHHHHHHHGGGSCEEEEEECCC-CC-CCCSEEEEEESSHHHHHHHHHHHSSCCCC-CCCEEECC
T ss_pred CcCCEEEEECCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccCceEEEEeCCHHHHHHHHHHccCCeeCCeeEEEecC
Confidence 456899999999999999999999999999999999998 8999999999999999999999999999999999999876
Q ss_pred ec
Q 029496 97 GT 98 (192)
Q Consensus 97 ~~ 98 (192)
..
T Consensus 106 ~~ 107 (216)
T 2qfj_A 106 SN 107 (216)
T ss_dssp SC
T ss_pred CC
Confidence 54
No 173
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.69 E-value=2.5e-16 Score=116.41 Aligned_cols=80 Identities=23% Similarity=0.445 Sum_probs=74.1
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHhhhCCCeEEEEEEeCC-CCCcceEEEEEEcCHHHHHHHHHHhCCCccCCce--EEE
Q 029496 17 IESGTKLYISNLEYGVSNEDIKELFSEVGELKRCSVHFDR-SGRSKGTAEVVLTRRADAIAAVKRYNNVQLDGKP--MKI 93 (192)
Q Consensus 17 ~~~~~~l~V~nL~~~~te~~L~~~f~~~G~i~~v~i~~~~-tg~~~g~afV~f~~~~~a~~Ai~~l~~~~l~g~~--i~V 93 (192)
....++|||+|||..+++++|+++|++||.|..+.++.+. ++.+++||||+|.+.++|++|++.|++..|.|+. |.|
T Consensus 85 ~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~~~i~v 164 (167)
T 1fxl_A 85 SIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPITV 164 (167)
T ss_dssp GGTTCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCCCTTCSSCCEE
T ss_pred cCCCCcEEECCCCCcCCHHHHHHHHHhcCCEeEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhcCCccCCCccceEE
Confidence 3466899999999999999999999999999999999998 8999999999999999999999999999999975 777
Q ss_pred EEe
Q 029496 94 EII 96 (192)
Q Consensus 94 ~~~ 96 (192)
++|
T Consensus 165 ~~A 167 (167)
T 1fxl_A 165 KFA 167 (167)
T ss_dssp EEC
T ss_pred EeC
Confidence 764
No 174
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.69 E-value=1e-16 Score=124.16 Aligned_cols=78 Identities=15% Similarity=0.211 Sum_probs=72.1
Q ss_pred CCCEEEEcCCC-CCCCHHHHHHHhhhCCCeEEEEEEeCCCCCcceEEEEEEcCHHHHHHHHHHhCCCccCCceEEEEEee
Q 029496 19 SGTKLYISNLE-YGVSNEDIKELFSEVGELKRCSVHFDRSGRSKGTAEVVLTRRADAIAAVKRYNNVQLDGKPMKIEIIG 97 (192)
Q Consensus 19 ~~~~l~V~nL~-~~~te~~L~~~f~~~G~i~~v~i~~~~tg~~~g~afV~f~~~~~a~~Ai~~l~~~~l~g~~i~V~~~~ 97 (192)
++++|||+||| +.+++++|+++|++||.|.+|+|+.+ .+|||||+|.+.++|++||+.||+..|.|+.|.|.+++
T Consensus 3 ~~~~l~V~nL~~~~~~~~~L~~~F~~~G~v~~v~i~~~----~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~l~v~~s~ 78 (205)
T 3tyt_A 3 DSPVLMVYGLDQSKMNCDRVFNVFCLYGNVEKVKFMKS----KPGAAMVEMADGYAVDRAITHLNNNFMFGQKMNVCVSK 78 (205)
T ss_dssp CCSEEEEECCCTTTCCHHHHHHHHTTTSCEEEEEECTT----STTCEEEEESSHHHHHHHHHHHTTCEETTEECEEEECS
T ss_pred CCCEEEEeCCCcccCCHHHHHHHHHhcCCeEEEEEecC----CCCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEEcc
Confidence 56899999999 89999999999999999999999865 37899999999999999999999999999999999987
Q ss_pred cCC
Q 029496 98 TNI 100 (192)
Q Consensus 98 ~~~ 100 (192)
...
T Consensus 79 ~~~ 81 (205)
T 3tyt_A 79 QPA 81 (205)
T ss_dssp CSC
T ss_pred CCc
Confidence 543
No 175
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.68 E-value=3.1e-17 Score=110.12 Aligned_cols=78 Identities=12% Similarity=0.221 Sum_probs=65.8
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHhhhCCCeEEEEEEeCCCCCcceEEEEEEcCHHHHHHHHHHhCCCccCCceEEEEEee
Q 029496 18 ESGTKLYISNLEYGVSNEDIKELFSEVGELKRCSVHFDRSGRSKGTAEVVLTRRADAIAAVKRYNNVQLDGKPMKIEIIG 97 (192)
Q Consensus 18 ~~~~~l~V~nL~~~~te~~L~~~f~~~G~i~~v~i~~~~tg~~~g~afV~f~~~~~a~~Ai~~l~~~~l~g~~i~V~~~~ 97 (192)
.+.++|||+|||+++++++|+++|++||.|..|.|+.+ +++||||+|.+.++|++|+. ....+.++.|.|.++.
T Consensus 3 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~----~~g~afV~f~~~~~a~~~~~--~~~~~~g~~l~v~~a~ 76 (88)
T 1wf0_A 3 SGSSGVFVGRCTGDMTEDELREFFSQYGDVMDVFIPKP----FRAFAFVTFADDQIAQSLCG--EDLIIKGISVHISNAE 76 (88)
T ss_dssp SCCCEEEEESCCSSSCHHHHHHHSTTTSCCCEEECCSS----CCSCCEEECSCHHHHHHTTT--CEEEETTEEEEEECCC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEEecC----CCCEEEEEECCHHHHHHHhc--CCceeCCEEEEEEecC
Confidence 46789999999999999999999999999999998754 68999999999999986532 2344589999999887
Q ss_pred cCCC
Q 029496 98 TNIG 101 (192)
Q Consensus 98 ~~~~ 101 (192)
++..
T Consensus 77 ~~~~ 80 (88)
T 1wf0_A 77 PKHN 80 (88)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 6544
No 176
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.67 E-value=3.3e-16 Score=116.75 Aligned_cols=81 Identities=23% Similarity=0.408 Sum_probs=72.9
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHhhhCCCeEEEEEEeCC-CC--CcceEEEEEEcCHHHHHHHHHHhCCCccC---CceEE
Q 029496 19 SGTKLYISNLEYGVSNEDIKELFSEVGELKRCSVHFDR-SG--RSKGTAEVVLTRRADAIAAVKRYNNVQLD---GKPMK 92 (192)
Q Consensus 19 ~~~~l~V~nL~~~~te~~L~~~f~~~G~i~~v~i~~~~-tg--~~~g~afV~f~~~~~a~~Ai~~l~~~~l~---g~~i~ 92 (192)
+.++|||+|||+++|+++|+++|++||.|.+|.|+.++ ++ ++++||||+|.+.++|++|++.|++..+. ++.+.
T Consensus 2 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~~~~ 81 (175)
T 3nmr_A 2 DAIKMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQNALHNMKVLPGMHHPIQ 81 (175)
T ss_dssp CCEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEECSSSSCEEEEEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCCE
T ss_pred CceEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCCCcceEEEEEECCHHHHHHHHHHhcCcEEccCCccceE
Confidence 56899999999999999999999999999999999998 55 89999999999999999999999998875 56777
Q ss_pred EEEeecC
Q 029496 93 IEIIGTN 99 (192)
Q Consensus 93 V~~~~~~ 99 (192)
+..+...
T Consensus 82 ~~~~~~~ 88 (175)
T 3nmr_A 82 MKPADSE 88 (175)
T ss_dssp EEECGGG
T ss_pred Ecccccc
Confidence 7776553
No 177
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.67 E-value=3.9e-16 Score=125.53 Aligned_cols=84 Identities=24% Similarity=0.413 Sum_probs=76.5
Q ss_pred CCCCCCCEEEEcCCCCCCCHHHHH----HHhhhCCCeEEEEEEeCCCCCcceEEEEEEcCHHHHHHHHHHhCCCccCCce
Q 029496 15 SSIESGTKLYISNLEYGVSNEDIK----ELFSEVGELKRCSVHFDRSGRSKGTAEVVLTRRADAIAAVKRYNNVQLDGKP 90 (192)
Q Consensus 15 ~~~~~~~~l~V~nL~~~~te~~L~----~~f~~~G~i~~v~i~~~~tg~~~g~afV~f~~~~~a~~Ai~~l~~~~l~g~~ 90 (192)
+...+.++|||+|||+++++++|+ ++|.+||.|..|.|+. +++++|||||+|.+.++|++||+.|++..|.|+.
T Consensus 4 ~~~~~~~~l~V~nlp~~~~~~~l~~~L~~~F~~~G~i~~v~~~~--~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~ 81 (282)
T 3pgw_A 4 PETRPNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSR--SLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKP 81 (282)
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcC--CCCcceEEEEEECCHHHHHHHHHHhcCCeeCCcE
Confidence 456778999999999999999966 8999999999998875 6788999999999999999999999999999999
Q ss_pred EEEEEeecCC
Q 029496 91 MKIEIIGTNI 100 (192)
Q Consensus 91 i~V~~~~~~~ 100 (192)
|+|+++....
T Consensus 82 l~v~~a~~~~ 91 (282)
T 3pgw_A 82 MRIQYAKTDS 91 (282)
T ss_pred EEEEEeccCc
Confidence 9999996644
No 178
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=99.67 E-value=3.3e-16 Score=120.20 Aligned_cols=79 Identities=18% Similarity=0.188 Sum_probs=73.1
Q ss_pred CCEEEEcCCCCCCCHHHHHHHhhhCCCeEEEEEEeCCCCCcceEEEEEEcCHHHHHHHHHHhCCCccCCceEEEEEeecC
Q 029496 20 GTKLYISNLEYGVSNEDIKELFSEVGELKRCSVHFDRSGRSKGTAEVVLTRRADAIAAVKRYNNVQLDGKPMKIEIIGTN 99 (192)
Q Consensus 20 ~~~l~V~nL~~~~te~~L~~~f~~~G~i~~v~i~~~~tg~~~g~afV~f~~~~~a~~Ai~~l~~~~l~g~~i~V~~~~~~ 99 (192)
.++|||+|||+++|+++|+++|++||.|..|.|+.+.++.++|||||+|.+.++|++|++.+ +..|+|+.|.|.++...
T Consensus 109 ~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~kG~aFVeF~~~e~A~~A~~~~-~~~~~Gr~l~V~~~~~y 187 (193)
T 2voo_A 109 NRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLHKAFKGSIFVVFDSIESAKKFVETP-GQKYKETDLLILFKDDY 187 (193)
T ss_dssp HTEEEEECCCTTCCHHHHHHHHTTSCCEEEEEEEECTTCCEEEEEEEEESSHHHHHHHHHCT-TCEETTEECEEEETTTC
T ss_pred cCEEEecCCCCcCCHHHHHHHHhcCCCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHhC-CCeECCEEEEEEEhHHH
Confidence 47999999999999999999999999999999999988899999999999999999999765 56999999999987653
No 179
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=99.66 E-value=8.7e-16 Score=106.79 Aligned_cols=81 Identities=16% Similarity=0.133 Sum_probs=72.3
Q ss_pred CCCCEEEEcCCCC-----CCCHHHHHHHhhhCCCeEEEEEEeCC--CCCcceEEEEEEcCHHHHHHHHHHhCCCccCCce
Q 029496 18 ESGTKLYISNLEY-----GVSNEDIKELFSEVGELKRCSVHFDR--SGRSKGTAEVVLTRRADAIAAVKRYNNVQLDGKP 90 (192)
Q Consensus 18 ~~~~~l~V~nL~~-----~~te~~L~~~f~~~G~i~~v~i~~~~--tg~~~g~afV~f~~~~~a~~Ai~~l~~~~l~g~~ 90 (192)
.+++.|+|.||.. +-++++|+++|++||.|.+|.|+.++ ++.++||+||+|.+.++|++|++.||+..++|+.
T Consensus 6 ~~s~~l~l~Nm~~~~~l~dd~~~dl~~~f~~~G~V~~v~i~~~~~~~~~~~G~~FV~f~~~~~A~~Ai~~lnG~~~~Gr~ 85 (105)
T 2pe8_A 6 CPTKVVLLRNMVGAGEVDEDLEVETKEECEKYGKVGKCVIFEIPGAPDDEAVRIFLEFERVESAIKAVVDLNGRYFGGRV 85 (105)
T ss_dssp SCCSEEEEESSSCSCCC---CHHHHHHHGGGGSCEEEEEEEECSSCCTTTSEEEEEEESSHHHHHHHHHHHTTCEETTEE
T ss_pred CCCCEEEEEcCCChHHhhHHHHHHHHHHHHhcCCEEEEEEecCCCCCCCCcEEEEEEECCHHHHHHHHHHHCCCEECCcE
Confidence 4678999999963 23689999999999999999999986 3688999999999999999999999999999999
Q ss_pred EEEEEeec
Q 029496 91 MKIEIIGT 98 (192)
Q Consensus 91 i~V~~~~~ 98 (192)
|.|+++..
T Consensus 86 i~v~~a~~ 93 (105)
T 2pe8_A 86 VKACFYNL 93 (105)
T ss_dssp CEEEECCH
T ss_pred EEEEEcCH
Confidence 99999864
No 180
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.65 E-value=5.9e-16 Score=121.40 Aligned_cols=83 Identities=25% Similarity=0.366 Sum_probs=75.7
Q ss_pred CCCCCCCEEEEcCCCC-CCCHHHHHHHhhhCCCeEEEEEEeCCCCCcceEEEEEEcCHHHHHHHHHHhCCCccCCceEEE
Q 029496 15 SSIESGTKLYISNLEY-GVSNEDIKELFSEVGELKRCSVHFDRSGRSKGTAEVVLTRRADAIAAVKRYNNVQLDGKPMKI 93 (192)
Q Consensus 15 ~~~~~~~~l~V~nL~~-~~te~~L~~~f~~~G~i~~v~i~~~~tg~~~g~afV~f~~~~~a~~Ai~~l~~~~l~g~~i~V 93 (192)
....+.++|||+|||+ .+++++|+++|++||.|..|.|+.++ ++||||+|.+.++|++|++.|++..|.|+.|.|
T Consensus 29 ~~~~~~~~l~V~nLp~~~~te~~L~~~F~~~G~i~~v~i~~~~----~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~v 104 (229)
T 2adc_A 29 LAGAGNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK----KENALVQMADGNQAQLAMSHLNGHKLHGKPIRI 104 (229)
T ss_dssp GGCCCCSEEEEESCCTTTCCHHHHHHHHHHHTCEEEEEECCTT----SCCEEEEESCHHHHHHHHHHHTTCBCSSSBCEE
T ss_pred CCCCCCCEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEEEECC----CCEEEEEECCHHHHHHHHHHhCCCeECCeEEEE
Confidence 3456779999999999 99999999999999999999998775 789999999999999999999999999999999
Q ss_pred EEeecCCC
Q 029496 94 EIIGTNIG 101 (192)
Q Consensus 94 ~~~~~~~~ 101 (192)
+++.....
T Consensus 105 ~~a~~~~~ 112 (229)
T 2adc_A 105 TLSKHQNV 112 (229)
T ss_dssp ECCSCCCC
T ss_pred EEecCccc
Confidence 99976543
No 181
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.64 E-value=2.5e-16 Score=116.76 Aligned_cols=78 Identities=22% Similarity=0.399 Sum_probs=71.9
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHhhhCCCeEEEEEEeCC-CCCcceEEEEEEcCHHHHHHHHHHhCCCccCCceEEEEEee
Q 029496 19 SGTKLYISNLEYGVSNEDIKELFSEVGELKRCSVHFDR-SGRSKGTAEVVLTRRADAIAAVKRYNNVQLDGKPMKIEIIG 97 (192)
Q Consensus 19 ~~~~l~V~nL~~~~te~~L~~~f~~~G~i~~v~i~~~~-tg~~~g~afV~f~~~~~a~~Ai~~l~~~~l~g~~i~V~~~~ 97 (192)
+.++|||+|||+++|+++|+++|++||.|.+|.|+.++ ++.++|||||+|.+.++|++|++. ...++|+.|.|.++.
T Consensus 2 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~--~~~~~g~~i~v~~~~ 79 (167)
T 2cjk_A 2 ESCKMFIGGLNWDTTEDNLREYFGKYGTVTDLKIMKDPATGRSRGFGFLSFEKPSSVDEVVKT--QHILDGKVIDPKRAI 79 (167)
T ss_dssp GGGEEEECSCCTTCCHHHHHHHHTTTCCEEEEECCCCTTTSSCCSCEEEEESSTHHHHHHHHS--CCEETTEECCCEECC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEECCCCCCccceEEEEEccHHHHHHHHhc--ccccCCeEccccccc
Confidence 46899999999999999999999999999999999998 899999999999999999999984 578999999888765
Q ss_pred c
Q 029496 98 T 98 (192)
Q Consensus 98 ~ 98 (192)
+
T Consensus 80 ~ 80 (167)
T 2cjk_A 80 P 80 (167)
T ss_dssp C
T ss_pred c
Confidence 4
No 182
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.64 E-value=5e-16 Score=116.25 Aligned_cols=80 Identities=23% Similarity=0.494 Sum_probs=72.4
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHhhhCCCeEEEEEEeCCCCCcceEEEEEEcCHHHHHHHHHHhCCCccCCceEEEEE
Q 029496 16 SIESGTKLYISNLEYGVSNEDIKELFSEVGELKRCSVHFDRSGRSKGTAEVVLTRRADAIAAVKRYNNVQLDGKPMKIEI 95 (192)
Q Consensus 16 ~~~~~~~l~V~nL~~~~te~~L~~~f~~~G~i~~v~i~~~~tg~~~g~afV~f~~~~~a~~Ai~~l~~~~l~g~~i~V~~ 95 (192)
...+.++|||+|||..+++++|+++|++||.|..+ ..++.+++||||+|.+.++|.+|++.|++..|+|+.|.|++
T Consensus 95 ~~~~~~~l~v~nlp~~~t~~~l~~~F~~~g~v~~~----~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~ 170 (175)
T 1fje_B 95 KVRAARTLLAKNLSFNITEDELKEVFEDALEIRLV----SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYY 170 (175)
T ss_dssp TTGGGGEEEEESCCSSCCHHHHHHHCTTCSEEEEE----CSSSSCCSEEEEECSSHHHHHHHHHHHTEEEETTEEEEEEE
T ss_pred ccccCCEEEEeCCCCCCCHHHHHHHHHhcCeEEEe----cCCCCCceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEe
Confidence 34466899999999999999999999999987665 44888999999999999999999999999999999999999
Q ss_pred eecC
Q 029496 96 IGTN 99 (192)
Q Consensus 96 ~~~~ 99 (192)
+.++
T Consensus 171 a~~k 174 (175)
T 1fje_B 171 TGEK 174 (175)
T ss_dssp CSSC
T ss_pred cCCC
Confidence 9764
No 183
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.64 E-value=1.4e-15 Score=122.44 Aligned_cols=86 Identities=16% Similarity=0.230 Sum_probs=79.9
Q ss_pred CCCCCCEEEEcCCCCCC-CHHHHHHHhhhCCCeEEEEEEeCCCCCcceEEEEEEcCHHHHHHHHHHhCCCccCCceEEEE
Q 029496 16 SIESGTKLYISNLEYGV-SNEDIKELFSEVGELKRCSVHFDRSGRSKGTAEVVLTRRADAIAAVKRYNNVQLDGKPMKIE 94 (192)
Q Consensus 16 ~~~~~~~l~V~nL~~~~-te~~L~~~f~~~G~i~~v~i~~~~tg~~~g~afV~f~~~~~a~~Ai~~l~~~~l~g~~i~V~ 94 (192)
...+.++|||+|||+.+ ++++|+++|+.||.|..+.|+.+.++.+++||||+|.+.++|.+|+..|++..|+|+.|.|.
T Consensus 180 ~~~~~~~l~v~nlp~~~~~~~~l~~~f~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 259 (284)
T 3smz_A 180 ALLHSRCLCVDRLPPGFNDVDALCRALSAVHSPTFCQLACGQDGQLKGFAVLEYETAEMAEEAQQQADGLSLGGSHLRVS 259 (284)
T ss_dssp TTTSCSEEEEECCCTTCCCHHHHHHHTCSSSCCSEEEEEECSSCCEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred ccCCccEEEEecCCcccCCHHHHHHHhhCCCCeEEEEEEECCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCeEEEEE
Confidence 44567899999999995 99999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeecCCC
Q 029496 95 IIGTNIG 101 (192)
Q Consensus 95 ~~~~~~~ 101 (192)
++.+...
T Consensus 260 ~a~~~~~ 266 (284)
T 3smz_A 260 FCAPGPP 266 (284)
T ss_dssp ECCSSSC
T ss_pred EecCCCc
Confidence 9976543
No 184
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.64 E-value=3.9e-15 Score=104.40 Aligned_cols=87 Identities=17% Similarity=0.300 Sum_probs=73.2
Q ss_pred ccCCCCCCCCEEEEcCCCCCCC-----------HHHHHHHhhhCCCeEEEEEEeCCCCCcceEEEEEEcCHHHHHHHHHH
Q 029496 12 ARSSSIESGTKLYISNLEYGVS-----------NEDIKELFSEVGELKRCSVHFDRSGRSKGTAEVVLTRRADAIAAVKR 80 (192)
Q Consensus 12 ~~~~~~~~~~~l~V~nL~~~~t-----------e~~L~~~f~~~G~i~~v~i~~~~tg~~~g~afV~f~~~~~a~~Ai~~ 80 (192)
.......+.++|+|.||..... +++|+++|++||.|..|.| .++ .++|||||+|.+.++|++|++.
T Consensus 7 ~~~~~~~~s~~l~l~Nl~~~~~~~~~~~~~~~~e~~l~~~f~~~G~v~~v~i-~~~--~~~G~afV~f~~~~~A~~Ai~~ 83 (112)
T 2dit_A 7 GGPSRMRHERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQIRKLLL-FDR--HPDGVASVSFRDPEEADYCIQT 83 (112)
T ss_dssp SCCCCCCSCCEEEEESSCCTTHHHHCSHHHHHHHHHHHHHGGGTSCCSEEEE-ETT--CTTCEEEEECSCHHHHHHHHHH
T ss_pred CCCCCCCCceEEEEEcCCCHHHhccCHHHHHHHHHHHHHHHHccCCEeEEEE-ecC--CCCEEEEEEECCHHHHHHHHHH
Confidence 3344566788999999954433 5799999999999999965 554 3789999999999999999999
Q ss_pred hCCCccCCceEEEEEeecCCC
Q 029496 81 YNNVQLDGKPMKIEIIGTNIG 101 (192)
Q Consensus 81 l~~~~l~g~~i~V~~~~~~~~ 101 (192)
|++..|+|+.|+|+++.+...
T Consensus 84 lng~~~~gr~l~v~~a~~~~~ 104 (112)
T 2dit_A 84 LDGRWFGGRQITAQAWDGTTD 104 (112)
T ss_dssp STTCEETTEECEEEECCSCCC
T ss_pred cCCCEECCcEEEEEEeCCCCC
Confidence 999999999999999977544
No 185
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=99.63 E-value=7.2e-16 Score=121.79 Aligned_cols=81 Identities=20% Similarity=0.274 Sum_probs=71.3
Q ss_pred CCCCCCEEEEcCCCCCC---------CHHHHHHHhhhCCCeEEEEEEeCCCCCcceEEEEEEcCHHHHHHHHHHhCCCcc
Q 029496 16 SIESGTKLYISNLEYGV---------SNEDIKELFSEVGELKRCSVHFDRSGRSKGTAEVVLTRRADAIAAVKRYNNVQL 86 (192)
Q Consensus 16 ~~~~~~~l~V~nL~~~~---------te~~L~~~f~~~G~i~~v~i~~~~tg~~~g~afV~f~~~~~a~~Ai~~l~~~~l 86 (192)
.....++|||+||+..+ ++++|+++|++||.|.+|.|+. .+|||||+|.+.++|+.|++.|++..|
T Consensus 130 ~~~~~rtLfVgnL~~~~~~~~~~~~~tEe~L~~~F~~fG~I~~v~v~~-----~kG~AFV~F~~~~~Ae~A~~am~g~~l 204 (240)
T 3u1l_A 130 FRKKNKTLYVGGIDGALNSKHLKPAQIESRIRFVFSRLGDIDRIRYVE-----SKNCGFVKFKYQANAEFAKEAMSNQTL 204 (240)
T ss_dssp -CCCCCEEEEECTTGGGTTCCCCHHHHHHHHHHHHHTTSCEEEEEEEG-----GGTEEEEEESSHHHHHHHHHHHTTCCC
T ss_pred cccCCceeecCCCChhhhcccccccCcHHHHHHHHHccCCEEEEEEEC-----CCCEEEEEeCCHHHHHHHHHHhCCCEE
Confidence 45577899999999998 7999999999999999999984 489999999999999999999999999
Q ss_pred ------------CCceEEEEEeecCCC
Q 029496 87 ------------DGKPMKIEIIGTNIG 101 (192)
Q Consensus 87 ------------~g~~i~V~~~~~~~~ 101 (192)
.|+.|.|.++.....
T Consensus 205 ~~~~~~e~~~~~~gr~L~V~wA~~~pn 231 (240)
T 3u1l_A 205 LLPSDKEWDDRREGTGLLVKWANEDPD 231 (240)
T ss_dssp CCTTSTTGGGGGGSCCCEEEECC----
T ss_pred eccccccccccCCCCEEEEEEccCCCC
Confidence 899999999986543
No 186
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.62 E-value=3.2e-15 Score=120.17 Aligned_cols=77 Identities=19% Similarity=0.213 Sum_probs=71.5
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHhhhCCCeEEEEEEeCCCCCcceEEEEEEcCHHHHHHHHHHhCCCccC-CceEEEEE
Q 029496 17 IESGTKLYISNLEYGVSNEDIKELFSEVGELKRCSVHFDRSGRSKGTAEVVLTRRADAIAAVKRYNNVQLD-GKPMKIEI 95 (192)
Q Consensus 17 ~~~~~~l~V~nL~~~~te~~L~~~f~~~G~i~~v~i~~~~tg~~~g~afV~f~~~~~a~~Ai~~l~~~~l~-g~~i~V~~ 95 (192)
..+.++|||+|||..+++++|+++|++||.|.+|.|+.++ ++||||+|.+.++|++|++.|++..|. |+.|+|++
T Consensus 204 ~~~~~~l~v~nl~~~~~~~~l~~~F~~~G~i~~v~~~~~~----~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~ 279 (282)
T 3pgw_A 204 NPPNHILFLTNLPEETNELMLSMLFNQFPGFKEVRLVPGR----HDIAFVEFDNEVQAGAARDALQGFKITQNNAMKISF 279 (282)
T ss_pred CCCCCEEEEeCCCCcCCHHHHHHHHHhcCCeEEEEEecCC----CcEEEEEeCCHHHHHHHHHHcCCcEeCCCCEEEEEE
Confidence 3467899999999999999999999999999999998654 589999999999999999999999999 99999999
Q ss_pred ee
Q 029496 96 IG 97 (192)
Q Consensus 96 ~~ 97 (192)
++
T Consensus 280 ak 281 (282)
T 3pgw_A 280 AK 281 (282)
T ss_pred ec
Confidence 86
No 187
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.62 E-value=3.6e-15 Score=119.97 Aligned_cols=83 Identities=19% Similarity=0.330 Sum_probs=78.3
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHhhhCCCeEEEEEEeCC-CCCcceEEEEEEcCHHHHHHHHHHhCCCccCCceEEEEEe
Q 029496 18 ESGTKLYISNLEYGVSNEDIKELFSEVGELKRCSVHFDR-SGRSKGTAEVVLTRRADAIAAVKRYNNVQLDGKPMKIEII 96 (192)
Q Consensus 18 ~~~~~l~V~nL~~~~te~~L~~~f~~~G~i~~v~i~~~~-tg~~~g~afV~f~~~~~a~~Ai~~l~~~~l~g~~i~V~~~ 96 (192)
...++|||+|||+.+++++|+++|.+||.|..+.++.++ ++.++|||||+|.+.++|++|++.|++..|+|+.|.|.++
T Consensus 93 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~a 172 (284)
T 3smz_A 93 PTDALLCVANLPPSLTQQQFEELVRPFGSLERCFLVYSERTGQSKGYGFAEYMKKDSAARAKSDLLGKPLGPRTLYVHWT 172 (284)
T ss_dssp CCSCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCEEEEcCCCCcCCHHHHHHHHHhcCCeeEEEEEeeCCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEC
Confidence 356899999999999999999999999999999999998 9999999999999999999999999999999999999998
Q ss_pred ecCC
Q 029496 97 GTNI 100 (192)
Q Consensus 97 ~~~~ 100 (192)
.+..
T Consensus 173 ~~~~ 176 (284)
T 3smz_A 173 DAGQ 176 (284)
T ss_dssp CGGG
T ss_pred CCCC
Confidence 7644
No 188
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.61 E-value=1.5e-15 Score=122.67 Aligned_cols=83 Identities=16% Similarity=0.292 Sum_probs=76.5
Q ss_pred CCCCCCEEEEcCCCCC-CCHHHHHHHhhhCCCeEEEEEEeCCC--CCcceEEEEEEcCHHHHHHHHHHhCCCccCCceEE
Q 029496 16 SIESGTKLYISNLEYG-VSNEDIKELFSEVGELKRCSVHFDRS--GRSKGTAEVVLTRRADAIAAVKRYNNVQLDGKPMK 92 (192)
Q Consensus 16 ~~~~~~~l~V~nL~~~-~te~~L~~~f~~~G~i~~v~i~~~~t--g~~~g~afV~f~~~~~a~~Ai~~l~~~~l~g~~i~ 92 (192)
...+.++|||+|||+. +++++|+++|++||.|..|.|+.+.+ +.++|||||+|.+.++|++|+ .|++..|.|+.|.
T Consensus 206 ~~~~~~~l~v~nlp~~~~t~~~l~~~F~~~G~v~~v~i~~~~~~tg~~~g~afV~F~~~~~A~~A~-~l~g~~~~g~~i~ 284 (292)
T 2ghp_A 206 ATLEGREIMIRNLSTELLDENLLRESFEGFGSIEKINIPAGQKEHSFNNCCAFMVFENKDSAERAL-QMNRSLLGNREIS 284 (292)
T ss_dssp -CCTTTEEEEEEECTTTCCHHHHHHHHGGGSCEEEEECCSCCC---CCCEEEEEEESSHHHHHHHG-GGTTEEETTEEEE
T ss_pred cCCCCceEEEECCCcccCCHHHHHHHHhccCCeeEEEEEecCCcCCCCceEEEEEeCCHHHHHHHH-HhcCCEECCcEEE
Confidence 4456789999999999 99999999999999999999998875 999999999999999999999 9999999999999
Q ss_pred EEEeecC
Q 029496 93 IEIIGTN 99 (192)
Q Consensus 93 V~~~~~~ 99 (192)
|.++.++
T Consensus 285 V~~a~~k 291 (292)
T 2ghp_A 285 VSLADKK 291 (292)
T ss_dssp EEECCCC
T ss_pred EEEecCC
Confidence 9999864
No 189
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.59 E-value=2.9e-15 Score=115.92 Aligned_cols=78 Identities=17% Similarity=0.267 Sum_probs=69.0
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHhhhCCCe--EEEEEEeCCCCCcceEEEEEEcCHHHHHHHHHHhCCCccCCc----eE
Q 029496 18 ESGTKLYISNLEYGVSNEDIKELFSEVGEL--KRCSVHFDRSGRSKGTAEVVLTRRADAIAAVKRYNNVQLDGK----PM 91 (192)
Q Consensus 18 ~~~~~l~V~nL~~~~te~~L~~~f~~~G~i--~~v~i~~~~tg~~~g~afV~f~~~~~a~~Ai~~l~~~~l~g~----~i 91 (192)
.+.++|||+|||+.+|+++|+++|++||.| ..+.++.++ +..++||||+|.+.++|.+||..||+..|.+. ++
T Consensus 121 ~p~~~l~v~NLp~~~t~~~L~~~F~~~G~v~~~~v~~~~~~-~~~~g~gfV~f~~~~~A~~Ai~~lng~~~~g~~~~~p~ 199 (205)
T 3tyt_A 121 HPSNVLHFFNAPLEVTEENFFEICDELGVKRPTSVKVFSGK-SERSSSGLLEWDSKSDALETLGFLNHYQMKNPNGPYPY 199 (205)
T ss_dssp CCCSEEEEEEECTTCCHHHHHHHHHHHTCCCCSEEEECSCC-SSSSEEEEEECSSHHHHHHHHHHHTTCEECCSSSSSCE
T ss_pred CCcceEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEEcCC-CCCceEEEEEeCCHHHHHHHHHHhCCCCccCCCCCcce
Confidence 456799999999999999999999999998 889888775 44569999999999999999999999999876 56
Q ss_pred EEEEe
Q 029496 92 KIEII 96 (192)
Q Consensus 92 ~V~~~ 96 (192)
.|+++
T Consensus 200 ~vk~~ 204 (205)
T 3tyt_A 200 TLKLC 204 (205)
T ss_dssp ECEEE
T ss_pred EEEec
Confidence 66664
No 190
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.59 E-value=2.3e-15 Score=114.99 Aligned_cols=79 Identities=27% Similarity=0.407 Sum_probs=72.8
Q ss_pred CCCEEEEcCCCC-CCCHHHHHHHhhhCCCeEEEEEEeCCCCCcceEEEEEEcCHHHHHHHHHHhCCCccCCceEEEEEee
Q 029496 19 SGTKLYISNLEY-GVSNEDIKELFSEVGELKRCSVHFDRSGRSKGTAEVVLTRRADAIAAVKRYNNVQLDGKPMKIEIIG 97 (192)
Q Consensus 19 ~~~~l~V~nL~~-~~te~~L~~~f~~~G~i~~v~i~~~~tg~~~g~afV~f~~~~~a~~Ai~~l~~~~l~g~~i~V~~~~ 97 (192)
..++|||+|||+ .+++++|+++|++||.|.+|.++.++ ++||||+|.+.++|++|++.|++..|.|+.|.|.++.
T Consensus 2 ~~~~l~v~nlp~~~~~~~~l~~~F~~~G~i~~v~i~~~~----~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~a~ 77 (198)
T 1qm9_A 2 GNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK----KENALVQMADGNQAQLAMSHLNGHKLHGKPIRITLSK 77 (198)
T ss_dssp CCCEEEEECCCSSSCCHHHHHHHHHTTCCCSEEECSTTC----SSCCEEECTTTHHHHHHHHHHTTCCCSSCCCEEEECC
T ss_pred CCcEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEEeCC----CCEEEEEECCHHHHHHHHHHhCCCeecCeEEEEEEec
Confidence 358999999999 99999999999999999999998764 6799999999999999999999999999999999987
Q ss_pred cCCC
Q 029496 98 TNIG 101 (192)
Q Consensus 98 ~~~~ 101 (192)
....
T Consensus 78 ~~~~ 81 (198)
T 1qm9_A 78 HQNV 81 (198)
T ss_dssp CCSC
T ss_pred CCCc
Confidence 6543
No 191
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.58 E-value=4.6e-16 Score=116.44 Aligned_cols=85 Identities=21% Similarity=0.179 Sum_probs=72.4
Q ss_pred CCCCCCCEEEEcCCCCCCCHHHHHHHhhhCCCeEEEEEEeCCCCCcceEEEEEEcCHHHHHHHHHHhCCCccCCceEEEE
Q 029496 15 SSIESGTKLYISNLEYGVSNEDIKELFSEVGELKRCSVHFDRSGRSKGTAEVVLTRRADAIAAVKRYNNVQLDGKPMKIE 94 (192)
Q Consensus 15 ~~~~~~~~l~V~nL~~~~te~~L~~~f~~~G~i~~v~i~~~~tg~~~g~afV~f~~~~~a~~Ai~~l~~~~l~g~~i~V~ 94 (192)
....+.++|||+|||+++++++|+++|.+||.+..+.+....++.++|||||+|.+.++|++|+ .|++..|.|+.|.|.
T Consensus 8 ~~~~~~~~l~V~nLp~~~t~~~l~~~f~~~g~~~~~~~~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~v~ 86 (175)
T 1fje_B 8 SESTTPFNLFIGNLNPNKSVAELKVAISELFAKNDLAVVDVRTGTNRKFGYVDFESAEDLEKAL-ELTGLKVFGNEIKLE 86 (175)
T ss_dssp SSCSSSEEEEEECCCTTSCHHHHHHHHHHHHHHHTCCCCEEEEETTTTEEEEEESSHHHHHHHH-HGGGEEETTEEEEEE
T ss_pred CCCCCCcEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEECCCCccccEEEEEECCHHHHHHHH-hcCCCEeCCeEEEEe
Confidence 4567789999999999999999999999998765532322237888999999999999999999 599999999999999
Q ss_pred EeecCC
Q 029496 95 IIGTNI 100 (192)
Q Consensus 95 ~~~~~~ 100 (192)
++....
T Consensus 87 ~~~~~~ 92 (175)
T 1fje_B 87 KPKGRD 92 (175)
T ss_dssp CCCCSS
T ss_pred cCCCcc
Confidence 987643
No 192
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.57 E-value=8.4e-15 Score=116.98 Aligned_cols=79 Identities=23% Similarity=0.383 Sum_probs=72.1
Q ss_pred CCCCCCCEEEEcCCCCCCCHHHHHHHhhhCCCeEEEEEEeCCCCCcceEEEEEEcCHHHHHHHHHHhCCCccCCceEEEE
Q 029496 15 SSIESGTKLYISNLEYGVSNEDIKELFSEVGELKRCSVHFDRSGRSKGTAEVVLTRRADAIAAVKRYNNVQLDGKPMKIE 94 (192)
Q Consensus 15 ~~~~~~~~l~V~nL~~~~te~~L~~~f~~~G~i~~v~i~~~~tg~~~g~afV~f~~~~~a~~Ai~~l~~~~l~g~~i~V~ 94 (192)
....+.++|||+|||+++|+++|+++|++||.|..|.|.. .+|||||+|.+.++|++|+..|++..|.|+.|.|.
T Consensus 17 ~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~-----~kg~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~ 91 (261)
T 3sde_A 17 KTYTQRCRLFVGNLPTDITEEDFKRLFERYGEPSEVFINR-----DRGFGFIRLESRTLAEIAKAELDGTILKSRPLRIR 91 (261)
T ss_dssp CSSCGGGEEEEESCCTTCCHHHHHHHTGGGCCCSEEEEET-----TTTEEEEECSSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEeC-----CCcEEEEEECCHHHHHHHHHHcCCcEECCceeEee
Confidence 3445668999999999999999999999999999999864 37899999999999999999999999999999999
Q ss_pred Eeec
Q 029496 95 IIGT 98 (192)
Q Consensus 95 ~~~~ 98 (192)
++.+
T Consensus 92 ~a~~ 95 (261)
T 3sde_A 92 FATH 95 (261)
T ss_dssp ECCC
T ss_pred eccc
Confidence 8864
No 193
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.57 E-value=1.2e-14 Score=110.92 Aligned_cols=78 Identities=23% Similarity=0.326 Sum_probs=71.9
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHhhhCC-CeEEEEEEeCCCCCcceEEEEEEcCHHHHHHHHHHhCCCccC-CceEEEEE
Q 029496 18 ESGTKLYISNLEYGVSNEDIKELFSEVG-ELKRCSVHFDRSGRSKGTAEVVLTRRADAIAAVKRYNNVQLD-GKPMKIEI 95 (192)
Q Consensus 18 ~~~~~l~V~nL~~~~te~~L~~~f~~~G-~i~~v~i~~~~tg~~~g~afV~f~~~~~a~~Ai~~l~~~~l~-g~~i~V~~ 95 (192)
.+.++|||+|||..+++++|+++|.+|| .|..+.|+.+ .+++|||+|.+.++|++|++.|++..|. |+.|+|.+
T Consensus 118 ~~~~~l~v~nl~~~~~~~~l~~~f~~~G~~v~~v~i~~~----~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~ 193 (198)
T 1qm9_A 118 PPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQK----DRKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVSF 193 (198)
T ss_dssp CCCCEEEECCCCTTCCHHHHHHHHHHTTSCCCEEEESST----TSSCEEEECSSHHHHHHHHHHHTSSCCSSCCSCCEEE
T ss_pred CCccEEEEeCCCCCCCHHHHHHHHHHcCCCceEEEEEeC----CCcEEEEEeCCHHHHHHHHHHhcCCccCCCCeEEEEe
Confidence 4578999999999999999999999999 9999998654 2789999999999999999999999999 99999999
Q ss_pred eecC
Q 029496 96 IGTN 99 (192)
Q Consensus 96 ~~~~ 99 (192)
++++
T Consensus 194 a~~~ 197 (198)
T 1qm9_A 194 SKST 197 (198)
T ss_dssp ECCC
T ss_pred eccc
Confidence 9764
No 194
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.56 E-value=9.1e-15 Score=116.77 Aligned_cols=83 Identities=28% Similarity=0.361 Sum_probs=74.7
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHhhhCCCeEEEEEEeCCCCCcceEEEEEEcCHHHHHHHHHHhCCC-ccC---CceEEE
Q 029496 18 ESGTKLYISNLEYGVSNEDIKELFSEVGELKRCSVHFDRSGRSKGTAEVVLTRRADAIAAVKRYNNV-QLD---GKPMKI 93 (192)
Q Consensus 18 ~~~~~l~V~nL~~~~te~~L~~~f~~~G~i~~v~i~~~~tg~~~g~afV~f~~~~~a~~Ai~~l~~~-~l~---g~~i~V 93 (192)
.+.++|||+|||+.+|+++|+++|.+||.|..|.|+.+.++.++|||||+|.+.++|.+|+..|++. .+. +++|.|
T Consensus 94 ~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~r~i~v 173 (261)
T 3sde_A 94 THGAALTVKNLSPVVSNELLEQAFSQFGPVEKAVVVVDDRGRATGKGFVEFAAKPPARKALERCGDGAFLLTTTPRPVIV 173 (261)
T ss_dssp CCSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETTSCEEEEEEEEESSHHHHHHHHHHHHHSCEESSSSCCBCEE
T ss_pred ccCCcccccCCCCCCCHHHHHHHHHhcCCeEEEEeeeCCCCCcCcEEEEEeCCHHHHHHHHHHhcCCeEEecCCCceEEE
Confidence 3567999999999999999999999999999999999999999999999999999999999999553 343 899999
Q ss_pred EEeecCC
Q 029496 94 EIIGTNI 100 (192)
Q Consensus 94 ~~~~~~~ 100 (192)
+++....
T Consensus 174 ~~~~~~~ 180 (261)
T 3sde_A 174 EPMEQFD 180 (261)
T ss_dssp EECCCEE
T ss_pred eeccccC
Confidence 9987643
No 195
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=99.56 E-value=1.6e-15 Score=105.18 Aligned_cols=72 Identities=26% Similarity=0.379 Sum_probs=64.5
Q ss_pred EcCCCCCCCHHHHHHHh------------hhCCCeEEEEEEeCCCCCcceEEEEEEcCHHHHHHHHHHhCCCccCCceEE
Q 029496 25 ISNLEYGVSNEDIKELF------------SEVGELKRCSVHFDRSGRSKGTAEVVLTRRADAIAAVKRYNNVQLDGKPMK 92 (192)
Q Consensus 25 V~nL~~~~te~~L~~~f------------~~~G~i~~v~i~~~~tg~~~g~afV~f~~~~~a~~Ai~~l~~~~l~g~~i~ 92 (192)
+.+|++.+++++|+++| ++||.|.+|.|+.+.+++++|||||+|.+.++|++|++.||+..++|+.|+
T Consensus 20 ~~~l~~~~~~~~l~~~f~~~~edl~~~f~~~~G~V~~v~i~~~~~~~~~G~~fV~f~~~~~A~~A~~~lng~~~~Gr~i~ 99 (104)
T 1jmt_A 20 ADGLRSAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNLGDHLVGNVYVKFRREEDAEKAVIDLNNRWFNGQPIH 99 (104)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEECCSSSSSSEEEEEEEESCHHHHHHHHHHHTTCEETTEECC
T ss_pred cCCcccccCHHHHHHHHHHHHHHHHHHhhccCCceEEEEEEeCCCCCccEEEEEEECCHHHHHHHHHHHCCCEECCEEEE
Confidence 56777777887777666 999999999999888788999999999999999999999999999999999
Q ss_pred EEEe
Q 029496 93 IEII 96 (192)
Q Consensus 93 V~~~ 96 (192)
|+++
T Consensus 100 v~~s 103 (104)
T 1jmt_A 100 AELS 103 (104)
T ss_dssp EEEC
T ss_pred EEEc
Confidence 9875
No 196
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.56 E-value=1.5e-14 Score=113.28 Aligned_cols=78 Identities=23% Similarity=0.326 Sum_probs=71.7
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHhhhCC-CeEEEEEEeCCCCCcceEEEEEEcCHHHHHHHHHHhCCCccC-CceEEEEE
Q 029496 18 ESGTKLYISNLEYGVSNEDIKELFSEVG-ELKRCSVHFDRSGRSKGTAEVVLTRRADAIAAVKRYNNVQLD-GKPMKIEI 95 (192)
Q Consensus 18 ~~~~~l~V~nL~~~~te~~L~~~f~~~G-~i~~v~i~~~~tg~~~g~afV~f~~~~~a~~Ai~~l~~~~l~-g~~i~V~~ 95 (192)
.+.++|||+|||..+++++|+++|.+|| .|..|.|+.+ .++||||+|.+.++|++|++.|++..|. |+.|+|++
T Consensus 149 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~----~~g~afV~f~~~~~A~~Ai~~l~g~~~~~g~~l~v~~ 224 (229)
T 2adc_A 149 PPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQK----DRKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVSF 224 (229)
T ss_dssp CSCSEEEEECCCTTCCHHHHHHHHHTTSCCEEEEEECSS----STTCEEEEESSHHHHHHHHHHHTTCBSSSSCBCEEEE
T ss_pred CCCCEEEEeCCCccCCHHHHHHHHHHcCCCeeEEEEEEC----CCcEEEEEECCHHHHHHHHHHHCCCccCCCCeEEEEE
Confidence 4578999999999999999999999999 9999998643 3689999999999999999999999999 99999999
Q ss_pred eecC
Q 029496 96 IGTN 99 (192)
Q Consensus 96 ~~~~ 99 (192)
++++
T Consensus 225 a~~~ 228 (229)
T 2adc_A 225 SKST 228 (229)
T ss_dssp CSSC
T ss_pred ecCC
Confidence 9764
No 197
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.56 E-value=8.7e-15 Score=118.19 Aligned_cols=82 Identities=16% Similarity=0.261 Sum_probs=70.9
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHhhhCC-CeEEEEEEeCCCCCcceEEEEEEcCHHHHHHHHHHhCCCccCCceEEEEEee
Q 029496 19 SGTKLYISNLEYGVSNEDIKELFSEVG-ELKRCSVHFDRSGRSKGTAEVVLTRRADAIAAVKRYNNVQLDGKPMKIEIIG 97 (192)
Q Consensus 19 ~~~~l~V~nL~~~~te~~L~~~f~~~G-~i~~v~i~~~~tg~~~g~afV~f~~~~~a~~Ai~~l~~~~l~g~~i~V~~~~ 97 (192)
..++|||+|||+.+++++|+++|.+|| .|..|.|+.++.+.+++||||+|.+.++|++|++.|++..|.|+.|.|.++.
T Consensus 116 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 195 (292)
T 2ghp_A 116 TECTLWMTNFPPSYTQRNIRDLLQDINVVALSIRLPSLRFNTSRRFAYIDVTSKEDARYCVEKLNGLKIEGYTLVTKVSN 195 (292)
T ss_dssp CSCEEEEECCCTTCCHHHHHHHHHHTTCCCCEEECC-------CCEEEEECSSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHhCCCeEEEEEEeCCCCCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEECC
Confidence 578999999999999999999999999 9999999988878889999999999999999999999999999999999987
Q ss_pred cCC
Q 029496 98 TNI 100 (192)
Q Consensus 98 ~~~ 100 (192)
+..
T Consensus 196 ~~~ 198 (292)
T 2ghp_A 196 PLE 198 (292)
T ss_dssp CC-
T ss_pred CCc
Confidence 644
No 198
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.54 E-value=2.2e-14 Score=106.73 Aligned_cols=76 Identities=18% Similarity=0.431 Sum_probs=67.5
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHhhhC----C-------CeEEEEEEeCCCCCcceEEEEEEcCHHHHHHHHHHhCCCcc
Q 029496 18 ESGTKLYISNLEYGVSNEDIKELFSEV----G-------ELKRCSVHFDRSGRSKGTAEVVLTRRADAIAAVKRYNNVQL 86 (192)
Q Consensus 18 ~~~~~l~V~nL~~~~te~~L~~~f~~~----G-------~i~~v~i~~~~tg~~~g~afV~f~~~~~a~~Ai~~l~~~~l 86 (192)
.+.++|||+|||+++|+++|+++|++| | .|.++.+. .+++||||+|.+.++|++|+ .|++..|
T Consensus 2 r~~~~l~V~nLp~~~t~~~l~~~F~~~g~~~g~~~~~~~~v~~~~~~-----~~~g~afV~f~~~~~A~~A~-~~~~~~~ 75 (172)
T 2g4b_A 2 GSARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQIN-----QDKNFAFLEFRSVDETTQAM-AFDGIIF 75 (172)
T ss_dssp CGGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEEE-----TTTTEEEEEESSHHHHHHHG-GGTTCEE
T ss_pred CcccEEEEcCCCcccCHHHHHHHHHHHhhhcccccCCCCceeeeEec-----CCCCEEEEEeCCHHHHHHHH-HhCCcEe
Confidence 356899999999999999999999999 6 77777765 34899999999999999999 8999999
Q ss_pred CCceEEEEEeecC
Q 029496 87 DGKPMKIEIIGTN 99 (192)
Q Consensus 87 ~g~~i~V~~~~~~ 99 (192)
.|+.|.|.++...
T Consensus 76 ~g~~i~v~~~~~~ 88 (172)
T 2g4b_A 76 QGQSLKIRRPHDY 88 (172)
T ss_dssp TTEECEEECCSSC
T ss_pred cCceeeecCCccc
Confidence 9999999987553
No 199
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=99.53 E-value=2.8e-14 Score=99.06 Aligned_cols=80 Identities=15% Similarity=0.122 Sum_probs=69.4
Q ss_pred CCCEEEEcCC--CCCCC--------HHHHHHHhhhCCCeEEEEEEeCC-C--CCcceEEEEEEcCHHHHHHHHHHhCCCc
Q 029496 19 SGTKLYISNL--EYGVS--------NEDIKELFSEVGELKRCSVHFDR-S--GRSKGTAEVVLTRRADAIAAVKRYNNVQ 85 (192)
Q Consensus 19 ~~~~l~V~nL--~~~~t--------e~~L~~~f~~~G~i~~v~i~~~~-t--g~~~g~afV~f~~~~~a~~Ai~~l~~~~ 85 (192)
+++.|.|.|+ +..+. +++|+++|++||.|.+|.|+.++ + +.++|++||+|.+.++|++|++.||+..
T Consensus 4 ps~vl~L~Nm~~~~~l~~d~~~~~~~~dl~~~f~k~G~V~~v~i~~~~~~~~~~~~G~~fV~f~~~~~A~~Ai~~lnG~~ 83 (105)
T 3v4m_A 4 PTEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKYGLVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLTGRK 83 (105)
T ss_dssp CCSEEEEESSCCGGGSSSHHHHHHHHHHHHHHHHTTSCEEEEECCCCBTTBCCTTTTEEEEEESSHHHHHHHHHHHTTCE
T ss_pred CCeEEEEECCCCHHHccChHHHHHHHHHHHHHHHccCCEEEEEEeccCCCCCcCCcEEEEEEECCHHHHHHHHHHhCCCE
Confidence 5678899998 33443 36899999999999999999887 3 3678999999999999999999999999
Q ss_pred cCCceEEEEEeec
Q 029496 86 LDGKPMKIEIIGT 98 (192)
Q Consensus 86 l~g~~i~V~~~~~ 98 (192)
++|+.|+|++...
T Consensus 84 f~GR~i~v~~~~~ 96 (105)
T 3v4m_A 84 FANRVVVTKYCDP 96 (105)
T ss_dssp ETTEECEEEEECH
T ss_pred eCCCEEEEEEeCH
Confidence 9999999999754
No 200
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.52 E-value=3.5e-14 Score=107.90 Aligned_cols=76 Identities=17% Similarity=0.411 Sum_probs=66.6
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHhhhC----C-------CeEEEEEEeCCCCCcceEEEEEEcCHHHHHHHHHHhCCCccC
Q 029496 19 SGTKLYISNLEYGVSNEDIKELFSEV----G-------ELKRCSVHFDRSGRSKGTAEVVLTRRADAIAAVKRYNNVQLD 87 (192)
Q Consensus 19 ~~~~l~V~nL~~~~te~~L~~~f~~~----G-------~i~~v~i~~~~tg~~~g~afV~f~~~~~a~~Ai~~l~~~~l~ 87 (192)
..++|||+|||+++++++|+++|++| | .|..+.+. .+++||||+|.+.++|++|+ .|++..|.
T Consensus 3 ~~~~l~V~nLp~~~te~~l~~~F~~~g~i~g~~~~~~~~v~~~~~~-----~~~g~afV~F~~~~~A~~Al-~l~g~~~~ 76 (198)
T 2yh0_A 3 MARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQIN-----QDKNFAFLEFRSVDETTQAM-AFDGIIFQ 76 (198)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHHHHHHHHTCCSSSSCSEEEEEEE-----TTTTEEEEEESCSHHHHHHG-GGTTEEET
T ss_pred ceeEEEEcCCCCCCCHHHHHHHHHHHHhhcccccCCCCceEEeEec-----CCCCEEEEEeCCHHHHHHHH-HhcCCEEc
Confidence 46899999999999999999999999 5 56666653 45899999999999999999 89999999
Q ss_pred CceEEEEEeecCC
Q 029496 88 GKPMKIEIIGTNI 100 (192)
Q Consensus 88 g~~i~V~~~~~~~ 100 (192)
|+.|.|.++....
T Consensus 77 g~~i~v~~~~~~~ 89 (198)
T 2yh0_A 77 GQSLKIRRPHDYQ 89 (198)
T ss_dssp TEEEEEECCCCCC
T ss_pred CceEEEeCCCCCC
Confidence 9999999876643
No 201
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.50 E-value=4.2e-13 Score=92.28 Aligned_cols=77 Identities=23% Similarity=0.215 Sum_probs=63.9
Q ss_pred CCCEEEEcCCC-------CCCCHHHHHHHhhhCCCeEEEEEEeCCCCCcceEEEEEEcCHHHHHHHHHHhCCCccCCceE
Q 029496 19 SGTKLYISNLE-------YGVSNEDIKELFSEVGELKRCSVHFDRSGRSKGTAEVVLTRRADAIAAVKRYNNVQLDGKPM 91 (192)
Q Consensus 19 ~~~~l~V~nL~-------~~~te~~L~~~f~~~G~i~~v~i~~~~tg~~~g~afV~f~~~~~a~~Ai~~l~~~~l~g~~i 91 (192)
...+|.|.-.. ..+++++|+++|++||.|.+|.|+ ++++|||||+|.+.++|+.||+.++ .+.+++|
T Consensus 9 ~~~~~~v~w~~~~~~~~~~~~te~~L~~~F~~~G~V~~v~i~----~~~rGfaFVeF~~~~~A~~Ai~~~~--~~~g~~l 82 (100)
T 2d9o_A 9 GTPKLKLKWKCKKEDESKGGYSKDVLLRLLQKYGEVLNLVLS----SKKPGTAVVEFATVKAAELAVQNEV--GLVDNPL 82 (100)
T ss_dssp SSCEEEEECCCCSSCSCCCSCCHHHHHHHHHTTSCEEEEEEE----SSSSSEEEEEESCHHHHHHHHHTCC--BCSSSBC
T ss_pred ccceEEEeeeccCccCcCCCCCHHHHHHHHHhcCCEEEEEEc----cCCCCEEEEEECCHHHHHHHHHhcC--CCCCCeE
Confidence 35677776443 458999999999999999999987 3678999999999999999998744 4679999
Q ss_pred EEEEeecCCC
Q 029496 92 KIEIIGTNIG 101 (192)
Q Consensus 92 ~V~~~~~~~~ 101 (192)
+|+++.+...
T Consensus 83 ~V~~a~~~~~ 92 (100)
T 2d9o_A 83 KISWLEGQPQ 92 (100)
T ss_dssp EEECSSCCCC
T ss_pred EEEEccCCCC
Confidence 9999876543
No 202
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=99.50 E-value=1.1e-13 Score=98.14 Aligned_cols=80 Identities=13% Similarity=0.198 Sum_probs=69.8
Q ss_pred CCCEEEEcCCCC--CC---CHHHHHHHhhhCCCeEEEEEEeCC-C----CCcceEEEEEEcCHHHHHHHHHHhCCCccCC
Q 029496 19 SGTKLYISNLEY--GV---SNEDIKELFSEVGELKRCSVHFDR-S----GRSKGTAEVVLTRRADAIAAVKRYNNVQLDG 88 (192)
Q Consensus 19 ~~~~l~V~nL~~--~~---te~~L~~~f~~~G~i~~v~i~~~~-t----g~~~g~afV~f~~~~~a~~Ai~~l~~~~l~g 88 (192)
+++.|+|.|+-. ++ .+++|++.|++||.|.+|.|+.++ + +.++|++||+|.+.++|++|++.||+..++|
T Consensus 19 ps~vl~L~Nm~~~~el~ddleedl~eef~k~G~V~~v~I~~~~~~~~~~~~~~G~~FV~F~~~e~A~~Ai~~LnGr~f~G 98 (118)
T 3ue2_A 19 ESTVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAG 98 (118)
T ss_dssp SCCEEEEESCSCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEEESSSTTCEEEEEEEEEESSHHHHHHHHHHHTTCEETT
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHHHHHhccCCEeEEEEeecCCCcccCCcceEEEEEEECCHHHHHHHHHHHCCCEECC
Confidence 678999999842 22 368899999999999999999886 3 4578999999999999999999999999999
Q ss_pred ceEEEEEeec
Q 029496 89 KPMKIEIIGT 98 (192)
Q Consensus 89 ~~i~V~~~~~ 98 (192)
+.|.|+++..
T Consensus 99 R~i~v~~~~~ 108 (118)
T 3ue2_A 99 RKVVAEVYDQ 108 (118)
T ss_dssp EECEEEEECH
T ss_pred cEEEEEEcCh
Confidence 9999999854
No 203
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=99.45 E-value=1.5e-13 Score=113.86 Aligned_cols=76 Identities=14% Similarity=0.183 Sum_probs=65.4
Q ss_pred CCCCCCEEEEcC--CCCCCCHHHHHHHhhhCCCeEEEEEEeCCCCCcceEEEEEEcCHHHHHHHHHHhCCCccC---Cc-
Q 029496 16 SIESGTKLYISN--LEYGVSNEDIKELFSEVGELKRCSVHFDRSGRSKGTAEVVLTRRADAIAAVKRYNNVQLD---GK- 89 (192)
Q Consensus 16 ~~~~~~~l~V~n--L~~~~te~~L~~~f~~~G~i~~v~i~~~~tg~~~g~afV~f~~~~~a~~Ai~~l~~~~l~---g~- 89 (192)
...++.+|||+| |+..+||++|+++|++||+|..|.+.. .++||||+|.+.++|++|++.||+..+. |+
T Consensus 14 ~~~ps~~l~VgN~gl~~~~te~~L~~~F~~~G~V~~v~~~~-----~kgfaFV~f~~~~~A~~Ai~~lnG~~~~~~~g~~ 88 (345)
T 3tht_A 14 VSYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPP-----NKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQK 88 (345)
T ss_dssp CSSCCSEEEEETCSGGGTCCHHHHHHHHHTTSCEEEEECCT-----TCSEEEEEESSHHHHHHHHHHTTTCEEECTTSCE
T ss_pred cCCCCCEEEEEcCCCCCCCCHHHHHHHHHhcCCeEEEEEeC-----CCCEEEEEECCHHHHHHHHHHhCCCccccccCCc
Confidence 457788999999 588999999999999999999887753 4799999999999999999999999872 44
Q ss_pred -eEEEEEe
Q 029496 90 -PMKIEII 96 (192)
Q Consensus 90 -~i~V~~~ 96 (192)
.|.|.++
T Consensus 89 ~~ly~~~~ 96 (345)
T 3tht_A 89 ITLYLNFV 96 (345)
T ss_dssp EECEEEEC
T ss_pred eEEEEEEe
Confidence 5666666
No 204
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=99.36 E-value=3.6e-12 Score=89.64 Aligned_cols=78 Identities=21% Similarity=0.187 Sum_probs=65.1
Q ss_pred CCCCEEEEcCCCCCCC----------HHHHHHHhhhCCCeEEEEEEeCCCCCcceEEEEEEcCHHHHHHHHHHhCCCccC
Q 029496 18 ESGTKLYISNLEYGVS----------NEDIKELFSEVGELKRCSVHFDRSGRSKGTAEVVLTRRADAIAAVKRYNNVQLD 87 (192)
Q Consensus 18 ~~~~~l~V~nL~~~~t----------e~~L~~~f~~~G~i~~v~i~~~~tg~~~g~afV~f~~~~~a~~Ai~~l~~~~l~ 87 (192)
.+++.|.|.|+=..-. +++|+++|++||.|.+|.|..+. .+|++||+|.+.++|++|++.||+..++
T Consensus 5 ~ps~vv~L~Nm~~~~e~~d~~~~~el~edl~~~f~kfG~V~~v~i~~~~---~~G~~fV~f~~~e~A~~Ai~~lnG~~f~ 81 (114)
T 3s6e_A 5 LATQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIHIYVDKNS---AQGNVYVKCPSIAAAIAAVNALHGRWFA 81 (114)
T ss_dssp CCCSEEEEESSCCTTTCCSTTHHHHHHHHHHHHHTTTTCCSEEEECTTC---TTCCEEEECSSHHHHHHHHHHHTTCEET
T ss_pred CCCcEEEEECCCChHHccChhHHHHHHHHHHHHHhccCCEEEEEEecCC---CcEEEEEEECCHHHHHHHHHHhCCCEEC
Confidence 4567888888743222 24789999999999999886542 5899999999999999999999999999
Q ss_pred CceEEEEEeec
Q 029496 88 GKPMKIEIIGT 98 (192)
Q Consensus 88 g~~i~V~~~~~ 98 (192)
|+.|.|+++..
T Consensus 82 GR~i~v~~~~~ 92 (114)
T 3s6e_A 82 GKMITAAYVPL 92 (114)
T ss_dssp TEECEEEEECH
T ss_pred CEEEEEEEEcH
Confidence 99999999843
No 205
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.35 E-value=4.9e-12 Score=89.55 Aligned_cols=78 Identities=24% Similarity=0.280 Sum_probs=69.6
Q ss_pred CCCCCCCEEEEcCCCCC-CCHHHHHHHhhhCCCeEEEEEEeCCCCCcceEEEEEEcC-HHHHHHHHHHhC--CCccCCce
Q 029496 15 SSIESGTKLYISNLEYG-VSNEDIKELFSEVGELKRCSVHFDRSGRSKGTAEVVLTR-RADAIAAVKRYN--NVQLDGKP 90 (192)
Q Consensus 15 ~~~~~~~~l~V~nL~~~-~te~~L~~~f~~~G~i~~v~i~~~~tg~~~g~afV~f~~-~~~a~~Ai~~l~--~~~l~g~~ 90 (192)
....+++.|||+||++. +++++|+++|++||.|.+|.+..+.+ +|||.|.+ .++|+.|++.|+ +..|++..
T Consensus 13 ~~~~~G~il~v~~l~~~~~sredLke~F~~~G~V~~Vd~~~g~~-----tgfVrf~~~~~~A~~av~~ln~~~~~i~g~~ 87 (121)
T 1owx_A 13 LEEKIGCLLKFSGDLDDQTCREDLHILFSNHGEIKWIDFVRGAK-----EGIILFKEKAKEALGKAKDANNGNLQLRNKE 87 (121)
T ss_dssp CSCCCCCEEEEEESCCSSCCHHHHHHHTCSSCCEEEEECCTTCS-----EEEEEESSCHHHHHHHHHHTTTSCBCTTSSS
T ss_pred ccccCCeEEEEecCCCCcCCHHHHHHHHHhcCCEEEEEEecCCC-----EEEEEECCChHHHHHHHHHhhcCCcEEeCcE
Confidence 46678999999999999 99999999999999999999987642 69999999 899999999995 67799999
Q ss_pred EEEEEee
Q 029496 91 MKIEIIG 97 (192)
Q Consensus 91 i~V~~~~ 97 (192)
+++++..
T Consensus 88 ~~~evL~ 94 (121)
T 1owx_A 88 VTWEVLE 94 (121)
T ss_dssp EEEEECC
T ss_pred EEEEECC
Confidence 9998764
No 206
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.28 E-value=1.4e-11 Score=82.34 Aligned_cols=76 Identities=16% Similarity=0.212 Sum_probs=63.3
Q ss_pred CCCCEEEEcCCCC----CCCH----HHHHHHhhhCCCeEEEEEEeCCCCCcceEEEEEEcCHHHHHHHHHHhCCCccCCc
Q 029496 18 ESGTKLYISNLEY----GVSN----EDIKELFSEVGELKRCSVHFDRSGRSKGTAEVVLTRRADAIAAVKRYNNVQLDGK 89 (192)
Q Consensus 18 ~~~~~l~V~nL~~----~~te----~~L~~~f~~~G~i~~v~i~~~~tg~~~g~afV~f~~~~~a~~Ai~~l~~~~l~g~ 89 (192)
++..+|+|.-++. +.-. .+|.+.|.+||.|..++|+.++ +||+|.+.++|.+||+ |++..+.|+
T Consensus 5 Ppd~tv~V~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vi~vr~~~d~-------~fVtF~d~~sAlaAi~-mnG~~v~Gr 76 (91)
T 2dnr_A 5 SSGGTVLVSIKSSLPENNFFDDALIDELLQQFASFGEVILIRFVEDK-------MWVTFLEGSSALNVLS-LNGKELLNR 76 (91)
T ss_dssp CSSCEEEEEEECSSTTTCSCCHHHHHHHHHHHHTTCCEEEEEECSSS-------EEEEESSHHHHHHGGG-GTTCEETTE
T ss_pred CCCCeEEEEeccCccccccCCHHHHHHHHHHHHhCCCeEEEEEecCC-------EEEEECChHHHHHHHh-cCCeEeCCe
Confidence 4567888877662 2323 5689999999999999998663 8999999999999998 999999999
Q ss_pred eEEEEEeecCCC
Q 029496 90 PMKIEIIGTNIG 101 (192)
Q Consensus 90 ~i~V~~~~~~~~ 101 (192)
.|+|+++++...
T Consensus 77 ~LkV~lkt~dW~ 88 (91)
T 2dnr_A 77 TITIALKSPSGP 88 (91)
T ss_dssp EEEEEECCCSSC
T ss_pred EEEEEeCCCCcc
Confidence 999999987543
No 207
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.11 E-value=1.2e-10 Score=78.26 Aligned_cols=75 Identities=8% Similarity=0.164 Sum_probs=62.9
Q ss_pred CCCCCCEEEEcCCCCC------CCH---HHHHHHhhhCCCeEEEEEEeCCCCCcceEEEEEEcCHHHHHHHHHHhCCCcc
Q 029496 16 SIESGTKLYISNLEYG------VSN---EDIKELFSEVGELKRCSVHFDRSGRSKGTAEVVLTRRADAIAAVKRYNNVQL 86 (192)
Q Consensus 16 ~~~~~~~l~V~nL~~~------~te---~~L~~~f~~~G~i~~v~i~~~~tg~~~g~afV~f~~~~~a~~Ai~~l~~~~l 86 (192)
--++..+|+|.-++.. ..+ .+|.+.|.+||.|..++|+.++ +||+|.+.++|.+||+ |++..+
T Consensus 11 ~GPpD~Tv~V~~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vilvr~v~d~-------~fVtF~d~~sAl~AI~-ldG~~v 82 (95)
T 1ufw_A 11 QGPLDATVVVNLQSPTLEEKNEFPEDLRTELMQTLGSYGTIVLVRINQGQ-------MLVTFADSHSALSVLD-VDGMKV 82 (95)
T ss_dssp CCCTTCEEEEEESSCCHHHHHSCCHHHHHHHHHHHHHHSCCSEEEEETTE-------EEEECSCSHHHHHHHH-GGGSEE
T ss_pred cCCCCCeEEEEecCCcccccccCCHHHHHHHHHHHHHCCCEEEEEEecCc-------EEEEEcChHHHHHHHh-cCCeee
Confidence 4456779999887643 232 4688999999999999999763 9999999999999998 999999
Q ss_pred CCceEEEEEeec
Q 029496 87 DGKPMKIEIIGT 98 (192)
Q Consensus 87 ~g~~i~V~~~~~ 98 (192)
+|+.|+|++..+
T Consensus 83 ~Gr~L~V~~k~~ 94 (95)
T 1ufw_A 83 KGRAVKISGPSS 94 (95)
T ss_dssp TTEEEEEECCCC
T ss_pred CCeEEEEeccCC
Confidence 999999998753
No 208
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=98.99 E-value=1.6e-09 Score=84.07 Aligned_cols=67 Identities=12% Similarity=0.168 Sum_probs=59.7
Q ss_pred CCHHHHHHHhhhCCCeEEEEEEeCC-----CCCcceEEEEEEcCHHHHHHHHHHhCCCccCCceEEEEEeec
Q 029496 32 VSNEDIKELFSEVGELKRCSVHFDR-----SGRSKGTAEVVLTRRADAIAAVKRYNNVQLDGKPMKIEIIGT 98 (192)
Q Consensus 32 ~te~~L~~~f~~~G~i~~v~i~~~~-----tg~~~g~afV~f~~~~~a~~Ai~~l~~~~l~g~~i~V~~~~~ 98 (192)
-.+++|++.|++||.|..+.|+.+. ++.++|++||+|.+.++|++|++.|++..++|+.|.|++...
T Consensus 141 e~~~dl~~e~~~~G~v~~~~v~~~~~~~~~~~~~~G~~fv~f~~~~~a~~a~~~l~gr~~~gr~i~~~~~~~ 212 (222)
T 3dxb_A 141 DLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAGRKVVAEVYDQ 212 (222)
T ss_dssp THHHHHHHHHTTTSCEEEEEEEEEECCSSTTCCEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEECCH
T ss_pred HHHHHHHHHHHccCCeEEEEEecCCCCcccCcCceeEEEEEECCHHHHHHHHHHhcCceECCeEEEEEEcCH
Confidence 3457899999999999999998554 448899999999999999999999999999999999999753
No 209
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=98.57 E-value=2.5e-07 Score=63.48 Aligned_cols=73 Identities=19% Similarity=0.169 Sum_probs=65.7
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHhhhC-----CCeEEEEEEeCCCCCcceEEEEEEcCHHHHHHHHHHhCCCccCCceEE
Q 029496 18 ESGTKLYISNLEYGVSNEDIKELFSEV-----GELKRCSVHFDRSGRSKGTAEVVLTRRADAIAAVKRYNNVQLDGKPMK 92 (192)
Q Consensus 18 ~~~~~l~V~nL~~~~te~~L~~~f~~~-----G~i~~v~i~~~~tg~~~g~afV~f~~~~~a~~Ai~~l~~~~l~g~~i~ 92 (192)
+...+|-+-|||..++++.|+.+++++ |.|+.|.+..|. +-|+|+|.+...|-+|.-.|++.+|.|++|+
T Consensus 19 ~~~rtiaL~~ipDtvndarIr~lve~~~~i~~g~i~KI~L~pDH-----~GAivef~d~~~AgKasLaL~G~ef~gr~Lr 93 (117)
T 2l9w_A 19 ELETLICLFPLSDKVSPSLICQFLQEEIHINEKDIRKILLVSDF-----NGAIIIFRDSKFAAKMLMILNGSQFQGKVIR 93 (117)
T ss_dssp TTTSCEEEECCCTTCCHHHHHHHHHHHTCCCTTTCSEEEEETTT-----TEEEEECSCHHHHHHHHHHHSSEEETTEEEE
T ss_pred cCCcEEEEecCCCCCCHHHHHHHHhhhhccCccceeEEEEecCC-----CceEEEEccchhhHHHHhhcCCeeecCeEEE
Confidence 456788889999999999999999999 999999998774 4699999999999999889999999999998
Q ss_pred EEE
Q 029496 93 IEI 95 (192)
Q Consensus 93 V~~ 95 (192)
+--
T Consensus 94 ~gT 96 (117)
T 2l9w_A 94 SGT 96 (117)
T ss_dssp EEC
T ss_pred ecC
Confidence 853
No 210
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.07 E-value=7.2e-05 Score=50.76 Aligned_cols=74 Identities=15% Similarity=0.169 Sum_probs=61.2
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHhhhC-----CCeEEEEEEeCCCCCcceEEEEEEcCHHHHHHHHHHhCCCccCCce
Q 029496 16 SIESGTKLYISNLEYGVSNEDIKELFSEV-----GELKRCSVHFDRSGRSKGTAEVVLTRRADAIAAVKRYNNVQLDGKP 90 (192)
Q Consensus 16 ~~~~~~~l~V~nL~~~~te~~L~~~f~~~-----G~i~~v~i~~~~tg~~~g~afV~f~~~~~a~~Ai~~l~~~~l~g~~ 90 (192)
.....++|.|.|||+.+.++.|+-+|+.- |+|..+.... ..|+|+|.+.+.|++.++. ..+.|++..
T Consensus 4 ~~~~~~~I~V~~lPp~~~~e~L~LYFEn~rrsGGG~V~~v~~~~-------~~AvItF~d~~va~rVL~k-~~H~L~~~~ 75 (104)
T 2dhx_A 4 GSSGGVAVEVRGLPPAVPDELLTLYFENRRRSGGGPVLSWQRLG-------CGGVLTFREPADAERVLAQ-ADHELHGAQ 75 (104)
T ss_dssp SCCCCCEEEEESCCTTSCHHHHHHHHHCTTTTCCCCEEEEEEET-------TEEEEEESSHHHHHHHHTC-SCCBSSSSB
T ss_pred CccCccEEEEECCCCCCChhHheEEEeCCCcCCCceeeEEEEcC-------CcEEEEEcChHHHHHHhcC-CcceecCeE
Confidence 45667899999999999999999999762 5888887652 5799999999999998863 588999999
Q ss_pred EEEEEee
Q 029496 91 MKIEIIG 97 (192)
Q Consensus 91 i~V~~~~ 97 (192)
|.|....
T Consensus 76 LsV~P~~ 82 (104)
T 2dhx_A 76 LSLRPAP 82 (104)
T ss_dssp CEEEECC
T ss_pred EEEEcCC
Confidence 9996643
No 211
>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4
Probab=97.83 E-value=7.9e-05 Score=49.70 Aligned_cols=77 Identities=17% Similarity=0.188 Sum_probs=61.1
Q ss_pred CEEEEcCCCCCCCHHHHHHHhhhCCCeEEEEEEeCC-CCC--cceEEEEEEcCHHHHHHHHHHhCCCccCCc-----eEE
Q 029496 21 TKLYISNLEYGVSNEDIKELFSEVGELKRCSVHFDR-SGR--SKGTAEVVLTRRADAIAAVKRYNNVQLDGK-----PMK 92 (192)
Q Consensus 21 ~~l~V~nL~~~~te~~L~~~f~~~G~i~~v~i~~~~-tg~--~~g~afV~f~~~~~a~~Ai~~l~~~~l~g~-----~i~ 92 (192)
++|.|.+||+.+||+++.+.+.....+.....+..+ +.+ ...-|||.|.+.+++....+.++++.+-+. +..
T Consensus 2 ~KvVIRrLPP~LteeeF~~~l~~~~~~d~~~fv~G~~s~~~~~~SRaYi~f~~~e~v~~f~~~~~g~~F~D~kg~~~~a~ 81 (91)
T 1uw4_A 2 SKVVIRRLPPTLTKEQLQEHLQPMPEHDYFEFFSNDTSLYPHMYARAYINFKNQEDIILFRDRFDGYVFLDNKGQEYPAI 81 (91)
T ss_dssp CEEEEEEECTTCCHHHHHHHHCSCCCEEEEEEEESCCSSTTCCCEEEEEEESSSHHHHHHHHHHTTCEEECTTCCEEECE
T ss_pred cEEEEeCCCCCCCHHHHHHHhcCcccceEEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEEEcCCCCEeeeE
Confidence 589999999999999999999988887777776655 322 346799999999999999999999986432 335
Q ss_pred EEEee
Q 029496 93 IEIIG 97 (192)
Q Consensus 93 V~~~~ 97 (192)
|++|-
T Consensus 82 VE~AP 86 (91)
T 1uw4_A 82 VEFAP 86 (91)
T ss_dssp EEECS
T ss_pred EEEcC
Confidence 66654
No 212
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=97.83 E-value=4.9e-05 Score=51.72 Aligned_cols=75 Identities=17% Similarity=0.152 Sum_probs=61.8
Q ss_pred CCCEEEEcCCCCCC-CH----HHHHHHhhhCCCeEEEEEEeCCCCCcceEEEEEEcCHHHHHHHHHHhCCCccCCceEEE
Q 029496 19 SGTKLYISNLEYGV-SN----EDIKELFSEVGELKRCSVHFDRSGRSKGTAEVVLTRRADAIAAVKRYNNVQLDGKPMKI 93 (192)
Q Consensus 19 ~~~~l~V~nL~~~~-te----~~L~~~f~~~G~i~~v~i~~~~tg~~~g~afV~f~~~~~a~~Ai~~l~~~~l~g~~i~V 93 (192)
-.++|+|.||+..+ +. +.++++|.+|+++........ -.-..|.|.++++|.+|-..||+..+.|++|+|
T Consensus 4 ~pntLiitnl~~~vF~~~~lk~~~e~Lf~~~~~~~tF~~lkS-----FRRirv~F~~~~~A~~AR~~Lh~~~f~g~~~r~ 78 (104)
T 1wey_A 4 GSSGLIACVANDDVFSESETRAKFESLFRTYDKDTTFQYFKS-----FKRVRINFSNPLSAADARLRLHKTEFLGKEMKL 78 (104)
T ss_dssp CCCEEEEECCCGGGGSTTTHHHHHHHHHHTTCSSCEEEEETT-----TTEEEEECSSTTHHHHHHHTSTTSEETTEECEE
T ss_pred CCceEEEecCCHHHcCCHHHHHHHHHHHHhhCcCcceeecCc-----ceEEEEEeCChHHHHHHHHHhccceecCceeEE
Confidence 34789999998865 22 467899999998877666532 335789999999999999999999999999999
Q ss_pred EEeec
Q 029496 94 EIIGT 98 (192)
Q Consensus 94 ~~~~~ 98 (192)
-++.+
T Consensus 79 YFgq~ 83 (104)
T 1wey_A 79 YFAQT 83 (104)
T ss_dssp ECCCC
T ss_pred EecCC
Confidence 99874
No 213
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=97.81 E-value=0.00012 Score=49.17 Aligned_cols=59 Identities=22% Similarity=0.181 Sum_probs=49.1
Q ss_pred CCCCCCCEEEEcCCCCCCCHHHHHHHhhhCCCeEEEEEEeCCCCCcceEEEEEEcCHHHHHHHHHHh
Q 029496 15 SSIESGTKLYISNLEYGVSNEDIKELFSEVGELKRCSVHFDRSGRSKGTAEVVLTRRADAIAAVKRY 81 (192)
Q Consensus 15 ~~~~~~~~l~V~nL~~~~te~~L~~~f~~~G~i~~v~i~~~~tg~~~g~afV~f~~~~~a~~Ai~~l 81 (192)
......+.++| .+|..+...||..+|+.||. ..|..+.|. .|||.|.+++.|..|+..+
T Consensus 11 ~~p~r~HVf~l-~FP~ewKt~DI~~lFs~fgg-v~I~WidDT------sAlvvf~~~~~a~~al~~i 69 (100)
T 1whv_A 11 LQPKRDHVLHV-TFPKEWKTSDLYQLFSAFGN-IQISWIDDT------SAFVSLSQPEQVQIAVNTS 69 (100)
T ss_dssp CCCCCCSEEEE-ECCTTCCHHHHHHHHTTTCS-CCCEEEETT------EEEEECSCHHHHHHHHHHH
T ss_pred CCCCCCeEEEE-eCChhhhhHHHHHHhhccCC-EEEEEEcCC------eEEEEecCHHHHHHHHHhc
Confidence 34456678888 99999999999999999984 456666663 7999999999999999865
No 214
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=97.52 E-value=0.00015 Score=48.78 Aligned_cols=56 Identities=25% Similarity=0.205 Sum_probs=47.6
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHhhhCCCeEEEEEEeCCCCCcceEEEEEEcCHHHHHHHHHHhC
Q 029496 19 SGTKLYISNLEYGVSNEDIKELFSEVGELKRCSVHFDRSGRSKGTAEVVLTRRADAIAAVKRYN 82 (192)
Q Consensus 19 ~~~~l~V~nL~~~~te~~L~~~f~~~G~i~~v~i~~~~tg~~~g~afV~f~~~~~a~~Ai~~l~ 82 (192)
..+.++| ++|..+...||..+|+.|| -..|..+.|. .|||.|.+++.|..|+..+.
T Consensus 5 R~HV~~l-~FP~ewKt~Di~~lFs~fg-gv~I~WidDT------sAlvvf~~~~~a~~al~~i~ 60 (101)
T 3ctr_A 5 SDHVLHV-TFPKEWKTSDLYQLFSAFG-NIQISWIDDT------SAFVSLSQPEQVKIAVNTSK 60 (101)
T ss_dssp EEEEEEE-ECCTTCCHHHHHHHTTTSE-EEEEEEEETT------EEEEEEEEECHHHHHHHHHT
T ss_pred CCeEEEE-eCChhhhhHHHHHHHhccC-CEEEEEEcCC------eEEEEecCHHHHHHHHHhcc
Confidence 3456777 9999999999999999998 4567777664 79999999999999998764
No 215
>2l08_A Regulator of nonsense transcripts 3A; NESG, nonsense regulator, structural genomics, PSI-2, protei structure initiative; NMR {Homo sapiens}
Probab=97.17 E-value=0.00049 Score=46.23 Aligned_cols=79 Identities=14% Similarity=0.141 Sum_probs=55.7
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHhhhCCCeEEEEEEeCC-CCC--cceEEEEEEcCHHHHHHHHHHhCCCccCCc-----e
Q 029496 19 SGTKLYISNLEYGVSNEDIKELFSEVGELKRCSVHFDR-SGR--SKGTAEVVLTRRADAIAAVKRYNNVQLDGK-----P 90 (192)
Q Consensus 19 ~~~~l~V~nL~~~~te~~L~~~f~~~G~i~~v~i~~~~-tg~--~~g~afV~f~~~~~a~~Ai~~l~~~~l~g~-----~ 90 (192)
-+-+|.|..||+.+||+++.+.+...-++.....+.-+ +.+ .-.-|||.|.+.+++....+.+++..+-+. +
T Consensus 8 ~~~KvVIRrLPP~Ltee~F~~~l~~~~~~d~~~fv~G~~s~~~~~~SRAYI~F~~~edv~~F~~~f~g~~F~D~kg~~~~ 87 (97)
T 2l08_A 8 HSHMVVIRRLPPGLTKEQLEEQLRPLPAHDYFEFFAADLSLYPHLYSRAYINFRNPDDILLFRDRFDGYIFLDSKGLEYP 87 (97)
T ss_dssp CCCCEEEECCCSCSCHHHHTTTTSCCSSEEECCCCCCCSSSCCSCCCCCEEEESCHHHHHHHHHHSTTEEEECTTCCEEE
T ss_pred cceeEEEeCCCCCCCHHHHHHHhCCcCccceEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHcCCcEEEeCCCCEee
Confidence 34689999999999999988888765554443333322 221 124689999999999999999999886432 3
Q ss_pred EEEEEee
Q 029496 91 MKIEIIG 97 (192)
Q Consensus 91 i~V~~~~ 97 (192)
..|++|-
T Consensus 88 a~VE~AP 94 (97)
T 2l08_A 88 AVVEFAP 94 (97)
T ss_dssp EEEEECC
T ss_pred eEEEecC
Confidence 4566653
No 216
>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1
Probab=96.86 E-value=0.0033 Score=43.75 Aligned_cols=73 Identities=8% Similarity=0.069 Sum_probs=55.9
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHhhhCCCeEEEEEEeCCCCCcceEEEEEEcCHHHHHHHHHHhCCCccCC-ceEEEEE
Q 029496 17 IESGTKLYISNLEYGVSNEDIKELFSEVGELKRCSVHFDRSGRSKGTAEVVLTRRADAIAAVKRYNNVQLDG-KPMKIEI 95 (192)
Q Consensus 17 ~~~~~~l~V~nL~~~~te~~L~~~f~~~G~i~~v~i~~~~tg~~~g~afV~f~~~~~a~~Ai~~l~~~~l~g-~~i~V~~ 95 (192)
....+-|-|-+.|+... ..|...|++||.|.+.... + ...+-+|.|.++.+|++||.. |+..|++ ..|-|..
T Consensus 21 ~~~~~wVtVFGFp~~~~-~~VL~~F~~~G~Iv~~~~~---~--~~NWihI~Y~s~~~A~rAL~k-NG~ii~g~~mIGV~p 93 (119)
T 1wwh_A 21 HLDDTWVTVFGFPQASA-SYILLQFAQYGNILKHVMS---N--TGNWMHIRYQSKLQARKALSK-DGRIFGESIMIGVKP 93 (119)
T ss_dssp CGGGGEEEEECCCGGGH-HHHHHHHHTTSCEEEEEEC---S--SSSEEEEEESSHHHHHHHHTT-TTCEETTTEECEEEE
T ss_pred CCCCCEEEEECCCHHHH-HHHHHHHHhhCcEEEeccC---C--CCCeEEEEeCCHHHHHHHHHh-CCeEecCCEEEEEEE
Confidence 34567788888888864 5677889999999887652 1 234899999999999999964 9999985 5566655
Q ss_pred e
Q 029496 96 I 96 (192)
Q Consensus 96 ~ 96 (192)
.
T Consensus 94 ~ 94 (119)
T 1wwh_A 94 C 94 (119)
T ss_dssp C
T ss_pred C
Confidence 3
No 217
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=96.42 E-value=0.0018 Score=55.42 Aligned_cols=54 Identities=11% Similarity=0.035 Sum_probs=40.7
Q ss_pred CEEEEcCCCCCCCHHHHHHHhhhCCCeEEEEEEeCCCCCcceEEEEEEcCHHHHHHHHH
Q 029496 21 TKLYISNLEYGVSNEDIKELFSEVGELKRCSVHFDRSGRSKGTAEVVLTRRADAIAAVK 79 (192)
Q Consensus 21 ~~l~V~nL~~~~te~~L~~~f~~~G~i~~v~i~~~~tg~~~g~afV~f~~~~~a~~Ai~ 79 (192)
.+|||. +|..+++++|.++|++||.|.++.+..++ .-||.|+|.+.+++..++.
T Consensus 54 rsv~v~-~~~~~~~~~l~~y~~~~g~i~~~~~~~~~----g~~~~vef~~~~~~~~~~~ 107 (464)
T 3pq1_A 54 RTVLIH-CPEKISENKFLKYLSQFGPINNHFFYESF----GLYAVVEFCQKESIGSLQN 107 (464)
T ss_dssp TEEEEE-ECCC---CHHHHHHGGGSCCCCEEEECSS----SEEEEEECC---CCHHHHS
T ss_pred ceEEEE-cCCCCCHHHHHHHHHhcCCcceEEEEccC----CeEEEEEeCCHHHHHHHHh
Confidence 689997 79999999999999999999998776442 3699999999999987764
No 218
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=95.96 E-value=0.0067 Score=43.70 Aligned_cols=35 Identities=20% Similarity=0.212 Sum_probs=27.8
Q ss_pred EEEEeCCCCCcceEEEEEEcCHHHHHHHHHHhCCCc
Q 029496 50 CSVHFDRSGRSKGTAEVVLTRRADAIAAVKRYNNVQ 85 (192)
Q Consensus 50 v~i~~~~tg~~~g~afV~f~~~~~a~~Ai~~l~~~~ 85 (192)
+.|..+.. +++||+||+|.+.++|++|++.+++..
T Consensus 3 ~kl~ln~~-~~~G~~fV~f~~~~~A~~al~~~~~~~ 37 (158)
T 2kn4_A 3 YKLILNGK-TLKGETTTEAVDAATAEKVFKQYANDN 37 (158)
T ss_dssp EEEEEECS-SCEEEEEEECSSHHHHHHHHHHHHHHH
T ss_pred EEEEecCc-cccchhHHHHHHHHhHHHHHHhhcccC
Confidence 45555543 579999999999999999998877543
No 219
>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}
Probab=95.63 E-value=0.016 Score=40.96 Aligned_cols=77 Identities=13% Similarity=0.167 Sum_probs=51.8
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHhhhCCCeEE-EEEEe---------CCCC-----CcceEEEEEEcCHHHHHHHHHHhCC
Q 029496 19 SGTKLYISNLEYGVSNEDIKELFSEVGELKR-CSVHF---------DRSG-----RSKGTAEVVLTRRADAIAAVKRYNN 83 (192)
Q Consensus 19 ~~~~l~V~nL~~~~te~~L~~~f~~~G~i~~-v~i~~---------~~tg-----~~~g~afV~f~~~~~a~~Ai~~l~~ 83 (192)
..+.|.|=+.|+..+. .+-+.|++||.|.+ ..+.. .+.. ....+-.|+|.++.+|++||. .|+
T Consensus 6 ~e~~VtVFGFp~~~~~-~VI~~Fs~~G~IlE~~~~~~~~~~~~~~~~~~k~yP~f~g~NWikItYds~~~A~rAL~-~NG 83 (132)
T 3p3d_A 6 GELAILVFGYPETMAN-QVIAYFQEFGTILEDFEVLRKPQAMTVGLQDRQFVPIFSGNSWTKITYDNPASAVDALL-ENG 83 (132)
T ss_dssp --CEEEEECCCGGGHH-HHHHHHGGGSCBCSCCGGGCCC-----------CCCCCEETTEEEEEBSSHHHHHHHHT-TTT
T ss_pred CceEEEEEecCHHHHH-HHHHHHHhhceEeeeccccccccccccccccccccCccCCCcEEEEEcCCHHHHHHHHH-hCC
Confidence 3455666678777664 46678999999865 21110 0000 024577999999999999996 499
Q ss_pred CccCCceEEEEEee
Q 029496 84 VQLDGKPMKIEIIG 97 (192)
Q Consensus 84 ~~l~g~~i~V~~~~ 97 (192)
..|+|.-|-|....
T Consensus 84 ~ii~G~mIGV~Py~ 97 (132)
T 3p3d_A 84 AVFNGVLLGVIPYT 97 (132)
T ss_dssp CEETTEECEEEECC
T ss_pred eEeCcEEEEEEECC
Confidence 99999877776653
No 220
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=94.85 E-value=0.0081 Score=43.00 Aligned_cols=40 Identities=23% Similarity=0.236 Sum_probs=35.5
Q ss_pred CCcceEEEEEEcCHHHHHHHHHHh-CCCccCCceEEEEEeec
Q 029496 58 GRSKGTAEVVLTRRADAIAAVKRY-NNVQLDGKPMKIEIIGT 98 (192)
Q Consensus 58 g~~~g~afV~f~~~~~a~~Ai~~l-~~~~l~g~~i~V~~~~~ 98 (192)
.+.+|+++|+|.+.++|++|++.| ++..++| .|.+.++..
T Consensus 10 ~~l~G~~~ve~~~~~~A~~a~~~~~ng~~~~G-~~~~~~a~~ 50 (150)
T 2i2y_A 10 KTLKGETTTEAVDAATAEKVFKQYANDNGVDG-EWTYDDATK 50 (150)
T ss_dssp SSSCEEEEEECSSHHHHTTTHHHHHHHHTCCC-EEEEETTTT
T ss_pred ccccccceeeecCHHHHHHHHHHHhcCCCCCC-ceecccccC
Confidence 356899999999999999999999 9999999 888887654
No 221
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=92.85 E-value=0.39 Score=41.46 Aligned_cols=56 Identities=23% Similarity=0.216 Sum_probs=45.0
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHhhhCCCeEEEEEEeCCCCCcceEEEEEEcCHHHHHHHHHHhC
Q 029496 19 SGTKLYISNLEYGVSNEDIKELFSEVGELKRCSVHFDRSGRSKGTAEVVLTRRADAIAAVKRYN 82 (192)
Q Consensus 19 ~~~~l~V~nL~~~~te~~L~~~f~~~G~i~~v~i~~~~tg~~~g~afV~f~~~~~a~~Ai~~l~ 82 (192)
....++|+ +|..+...+|.++|+.||. .+|..+.+ -.|||.|.+.+.|..++..+.
T Consensus 439 R~~vl~v~-f~~~~~~~~i~~~fs~fg~-v~V~widd------t~a~V~~~~~~~a~~~l~~~~ 494 (507)
T 3d45_A 439 RDHVLHVT-FPKEWKTSDLYQLFSAFGN-IQISWIDD------TSAFVSLSQPEQVQIAVNTSK 494 (507)
T ss_dssp GGGEEEEE-CCTTCCHHHHHHHGGGGCC-CEEEECSS------SEEEEECSCHHHHHHHHHHHT
T ss_pred cCcEEEEe-CCCCCCHHHHHHHHHhcCC-EEEEEEcC------CeEEEEECCHHHHHHHHHHHH
Confidence 44566665 8888899999999999995 45655533 369999999999999999875
No 222
>2g0c_A ATP-dependent RNA helicase DBPA; RNA recognition motif, hydrolase; 1.70A {Bacillus subtilis} PDB: 3moj_B
Probab=91.14 E-value=0.61 Score=29.11 Aligned_cols=68 Identities=15% Similarity=0.245 Sum_probs=43.2
Q ss_pred EEEEc-CCCCCCCHHHHHHHhhhCC-----CeEEEEEEeCCCCCcceEEEEEEcCHHHHHHHHHHhCCCccCCceEEEEE
Q 029496 22 KLYIS-NLEYGVSNEDIKELFSEVG-----ELKRCSVHFDRSGRSKGTAEVVLTRRADAIAAVKRYNNVQLDGKPMKIEI 95 (192)
Q Consensus 22 ~l~V~-nL~~~~te~~L~~~f~~~G-----~i~~v~i~~~~tg~~~g~afV~f~~~~~a~~Ai~~l~~~~l~g~~i~V~~ 95 (192)
++||. +--..++..+|..++..-+ .|-.|.|.. .|.||+-.. +.++.+++.|+...+.|+.+.|+.
T Consensus 2 ~~~i~~Grk~~~~p~~ivg~i~~~~gi~~~~IG~I~i~d-------~~s~v~v~~-~~~~~~~~~l~~~~i~g~~~~v~~ 73 (76)
T 2g0c_A 2 KLYFNGGKKKKIRAVDFVGTIAKIDGVSADDIGIITIMD-------NASYVEILN-GKGPHVLKVMKNTTVKGKQLKVNK 73 (76)
T ss_dssp EEEESCCCC----CHHHHHHHHTSTTCCGGGEEEEEECS-------SCEEEEECT-TCHHHHHHHHTTCCC---CCCEEE
T ss_pred EEEEeCCCccCCCHHHHHHHHHHccCCChhhccEEEEeC-------CcEEEEECH-HHHHHHHHHhccccCcCceEEEEE
Confidence 45663 2233466667777775433 456677752 378999975 678889999999999999999987
Q ss_pred ee
Q 029496 96 IG 97 (192)
Q Consensus 96 ~~ 97 (192)
+.
T Consensus 74 ~~ 75 (76)
T 2g0c_A 74 AN 75 (76)
T ss_dssp CC
T ss_pred CC
Confidence 64
No 223
>4eyt_A Telomerase associated protein P65; RNA, LA protein, LARP7, RRM, XRRM, RNA binding protein; 2.50A {Tetrahymena thermophila} PDB: 4erd_A
Probab=71.04 E-value=19 Score=23.49 Aligned_cols=60 Identities=15% Similarity=0.205 Sum_probs=46.6
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHhhhCCCeEEEEEEeCCCCCcceEEEEEEcCHHHHHHHHHHhCCC
Q 029496 18 ESGTKLYISNLEYGVSNEDIKELFSEVGELKRCSVHFDRSGRSKGTAEVVLTRRADAIAAVKRYNNV 84 (192)
Q Consensus 18 ~~~~~l~V~nL~~~~te~~L~~~f~~~G~i~~v~i~~~~tg~~~g~afV~f~~~~~a~~Ai~~l~~~ 84 (192)
...|-|-|-|+|..+-.+++--.....|---.|..+ .|-|.+.|.+.++..-|+..|-++
T Consensus 10 kqnclikiinipqgtlkaevvlavrhlgyefycdyi-------dgqamirfqnsdeqrlaiqkllnh 69 (129)
T 4eyt_A 10 KQNCLIKIINIPQGTLKAEVVLAVRHLGYEFYCDYI-------DGQAMIRFQNSDEQRLAIQKLLNH 69 (129)
T ss_dssp CCSCEEEEECCCTTCCHHHHHHHHHTTCCCEEEEEC-------SSCEEEEESSHHHHHHHHHHHEET
T ss_pred hhCcEEEEEecCCCceeeeeEEeehhcCeeEeeeee-------cCeeEEEecCChHHHHHHHHHHhc
Confidence 456788899999999988877666777755566554 457999999999999999877443
No 224
>3fry_A Probable copper-exporting P-type ATPase A; transport protein, metal binding domain, domain SWAP, ATP-BI cell membrane, copper transport; HET: CIT; 2.00A {Archaeoglobus fulgidus}
Probab=49.08 E-value=38 Score=19.81 Aligned_cols=55 Identities=18% Similarity=0.103 Sum_probs=41.4
Q ss_pred CCEEEEcCCCCCCCHHHHHHHhhhCCCeEEEEEEeCCCCCcceEEEEEEcCHHHHHHHHHH
Q 029496 20 GTKLYISNLEYGVSNEDIKELFSEVGELKRCSVHFDRSGRSKGTAEVVLTRRADAIAAVKR 80 (192)
Q Consensus 20 ~~~l~V~nL~~~~te~~L~~~f~~~G~i~~v~i~~~~tg~~~g~afV~f~~~~~a~~Ai~~ 80 (192)
..++.|.++.-..-...++..+.. ..|..+.+.. ..+.+.|+|.+.++...+|+.
T Consensus 6 ~~~~~v~gm~C~~C~~~ie~~l~~-~gv~~~~v~~-----~~~~~~v~~~~~~~i~~~i~~ 60 (73)
T 3fry_A 6 KIVLELSGLSCHHCVARVKKALEE-AGAKVEKVDL-----NEAVVAGNKEDVDKYIKAVEA 60 (73)
T ss_dssp EEEEEEESSBCGGGHHHHHHHHHH-TTCEEEEECS-----SEEEEEEEGGGHHHHHHHHHH
T ss_pred EEEEEECCCCCHHHHHHHHHHhcc-CCcEEEEEEc-----cCCEEEEEECCHHHHHHHHHH
Confidence 357888888887778889999988 7788777743 246788888866677777765
No 225
>3twe_A Alpha4H; unknown function; HET: PGE; 1.36A {Synthetic} PDB: 3twf_A* 4g4m_A*
Probab=48.64 E-value=15 Score=17.48 Aligned_cols=16 Identities=19% Similarity=0.329 Sum_probs=12.7
Q ss_pred CHHhHhHHHHHHHHHh
Q 029496 169 SVEDLDADLEKYHIEA 184 (192)
Q Consensus 169 ~~~~lD~el~~~~~~~ 184 (192)
.++||-+||+|..++-
T Consensus 2 nadelykeledlqerl 17 (27)
T 3twe_A 2 NADELYKELEDLQERL 17 (27)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHH
Confidence 3688999999988753
No 226
>4e8u_A Putative uncharacterized protein T8P19.180; XS domain, RNA binding protein, RNA directed DNA methylation; 2.70A {Arabidopsis thaliana}
Probab=40.85 E-value=1e+02 Score=22.39 Aligned_cols=56 Identities=16% Similarity=0.194 Sum_probs=36.9
Q ss_pred EEEEcCCCCC---------CCHHHHHHHh--hhCCCeEEEEEEeCCCCCcceEEEEEEcC-HHHHHHHHH
Q 029496 22 KLYISNLEYG---------VSNEDIKELF--SEVGELKRCSVHFDRSGRSKGTAEVVLTR-RADAIAAVK 79 (192)
Q Consensus 22 ~l~V~nL~~~---------~te~~L~~~f--~~~G~i~~v~i~~~~tg~~~g~afV~f~~-~~~a~~Ai~ 79 (192)
.+.|-|+|.. .....|++.| ..|.++ .|..+.++.| +.|++.|+|.+ -.-...|+.
T Consensus 14 mgIl~N~~t~~~~dg~~~G~s~~~l~~~~~~~~F~p~-kv~~l~~~~G-h~g~aIv~F~~dw~Gf~~A~~ 81 (172)
T 4e8u_A 14 KGIVVNIPTTKAQDGRSAGESGSKLRDEYILRGFNPT-RVRPLWNYLG-HSGTAIVEFNKDWNGLHNGLL 81 (172)
T ss_dssp EEEEECCCCEECTTSCEECCCSHHHHHHHHHTTCCCS-EEEEEECSSB-EEEEEEEECCSSHHHHHHHHH
T ss_pred EEEEEeccccccCCCCccCCCHHHHHHHHHhcCCCCc-eeEecccCCC-CceeEEEEecCChHHHHHHHH
Confidence 4556677751 2346788877 889775 4666666655 57899999984 444455553
No 227
>1sf9_A YFHH hypothetical protein; structural genomics, unknown function, PSI, protein structure initiative, midwest center for structural genomics; 1.71A {Bacillus subtilis} SCOP: b.34.15.1
Probab=39.85 E-value=21 Score=24.58 Aligned_cols=25 Identities=12% Similarity=0.418 Sum_probs=20.4
Q ss_pred CCCHHhHhHHHHHHHHHh--hhcCCCC
Q 029496 167 NLSVEDLDADLEKYHIEA--KQSDGMV 191 (192)
Q Consensus 167 ~~~~~~lD~el~~~~~~~--~~~~~~~ 191 (192)
+.|.+||-.|+..+.+++ ++..|+|
T Consensus 31 eMS~~EL~~EI~~L~EKaRKAEq~Gi~ 57 (128)
T 1sf9_A 31 QMTPHELNTEIALLSEKARKAEQHGII 57 (128)
T ss_dssp TCCHHHHHHHHHHHHHHHHHHHHTTCH
T ss_pred HcCHHHHHHHHHHHHHHHHHHHHcCCc
Confidence 689999999999999977 5555554
No 228
>2l6f_A Focal adhesion kinase 1, linker1, paxillin, linke paxillin; FAT, FAK, LD2, LD4, fusion protein, chimera protei transferase,cell adhesion; NMR {Gallus gallus} PDB: 2l6g_A 2l6h_A
Probab=45.71 E-value=6.2 Score=29.76 Aligned_cols=7 Identities=14% Similarity=0.406 Sum_probs=3.5
Q ss_pred HHHHHHH
Q 029496 176 DLEKYHI 182 (192)
Q Consensus 176 el~~~~~ 182 (192)
|||+.|+
T Consensus 205 ~~~~~~~ 211 (215)
T 2l6f_A 205 ELDELMA 211 (215)
Confidence 4555554
No 229
>3uly_B Charged multivesicular BODY protein 5; beta-hairpin, ESCRT-III, CHMPS, membrane protein-transport P complex, BROX; 2.60A {Homo sapiens} PDB: 3um1_B
Probab=34.60 E-value=24 Score=21.68 Aligned_cols=18 Identities=33% Similarity=0.486 Sum_probs=14.2
Q ss_pred CCCHHhHhHHHHHHHHHh
Q 029496 167 NLSVEDLDADLEKYHIEA 184 (192)
Q Consensus 167 ~~~~~~lD~el~~~~~~~ 184 (192)
....+||++||+..-.+-
T Consensus 7 diDE~eL~aELdaL~~e~ 24 (69)
T 3uly_B 7 ELDEDDLEAELDALGDEL 24 (69)
T ss_pred CCCHHHHHHHHHHHHHHH
Confidence 578999999999875543
No 230
>4bby_A Alkyldihydroxyacetonephosphate synthase, peroxiso; transferase, plasmalogen, flavin, peroxisome; HET: FAD; 1.90A {Cavia porcellus} PDB: 4bc9_A* 4bca_A* 4bc7_A*
Probab=34.08 E-value=31 Score=30.50 Aligned_cols=55 Identities=9% Similarity=0.173 Sum_probs=39.9
Q ss_pred CCCCCCHHHHHHHhh----hCCCeEEEEEEeCCCCCcceEEEEEEcCHHHHHHHHHHhC
Q 029496 28 LEYGVSNEDIKELFS----EVGELKRCSVHFDRSGRSKGTAEVVLTRRADAIAAVKRYN 82 (192)
Q Consensus 28 L~~~~te~~L~~~f~----~~G~i~~v~i~~~~tg~~~g~afV~f~~~~~a~~Ai~~l~ 82 (192)
.+.+.+--||..+|- .+|-|.++.|...+-...+.++++.|.+.++|.+++..+-
T Consensus 351 ~~k~~aGyDL~~L~iGSEGTLGIITeatLrL~P~P~~~~~~~~~f~d~~~a~~av~~i~ 409 (658)
T 4bby_A 351 GPRMSTGPDIHHFIMGSEGTLGVITEATIKIRPTPEYQKYGSVAFPNFEQGVACLREIA 409 (658)
T ss_dssp CSSCCSSSCTHHHHTTCTTSSCEEEEEEEECEECCSEEEEEEEEESSHHHHHHHHHHHH
T ss_pred ccccCCCcCHHHHhccCCCcCcceeeeeeeeccCCccccccccccCCchhhhhhHHHHH
Confidence 344444457888882 6788888877665544456788999999999999887653
No 231
>2cu1_A Mitogen-activated protein kinase kinase kinase 2; PB1 domain, MAPK/ERK kinase kinase 2, MEK kinase 2, MEKK 2, signaling protein; NMR {Homo sapiens} SCOP: d.15.2.2
Probab=33.59 E-value=1e+02 Score=20.31 Aligned_cols=65 Identities=18% Similarity=0.141 Sum_probs=44.8
Q ss_pred CCCCCCCHHHHHHHh-hhCCCeEEEEEEeCCCCCcceEEEEEEcCHHHHHHHHHHhCCCccCCceEEEEEeecC
Q 029496 27 NLEYGVSNEDIKELF-SEVGELKRCSVHFDRSGRSKGTAEVVLTRRADAIAAVKRYNNVQLDGKPMKIEIIGTN 99 (192)
Q Consensus 27 nL~~~~te~~L~~~f-~~~G~i~~v~i~~~~tg~~~g~afV~f~~~~~a~~Ai~~l~~~~l~g~~i~V~~~~~~ 99 (192)
.++.-+.-++|..-. ..||.-.++....+ -..|-..+.++..+||+.|+... .-+.|+|-+..++
T Consensus 23 ~f~RPv~f~eL~~Kv~~~fGq~ldL~y~n~-------EllIpl~sQeDLDkaIellDrss-~~kSLrIlL~~~~ 88 (103)
T 2cu1_A 23 QFPRPVKLEDLRSKAKIAFGQSMDLHYTNN-------ELVIPLTTQDDLDKAVELLDRSI-HMKSLKILLVING 88 (103)
T ss_dssp EEESSCCHHHHHHHHHHHHSSCEEEEECSS-------SSCEECCSHHHHHHHHHHHHHCS-SCCSEEEEEEECC
T ss_pred eccCCccHHHHHHHHHHHhCCeeeEEEecc-------eEEEeccCHHHHHHHHHHHccCC-cccceEEEEecCC
Confidence 467778888876655 46888777666522 25788889999999999876653 3345566555544
No 232
>3fut_A Dimethyladenosine transferase; methyltransferase, dimethyltransferase, dual-specific methyltransferase, 16S rRNA methyltransferase; 1.52A {Thermus thermophilus} PDB: 3fuu_A* 3fuv_A 3fuw_A* 3fux_A*
Probab=30.88 E-value=39 Score=26.27 Aligned_cols=32 Identities=22% Similarity=0.415 Sum_probs=24.9
Q ss_pred CEEEEcCCCCCCCHHHHHHHhhhCCCeEEEEEE
Q 029496 21 TKLYISNLEYGVSNEDIKELFSEVGELKRCSVH 53 (192)
Q Consensus 21 ~~l~V~nL~~~~te~~L~~~f~~~G~i~~v~i~ 53 (192)
.-+.|+|||+.++...|..++.. ..+..+.++
T Consensus 111 ~~~iv~NlPy~iss~il~~ll~~-~~~~~~~lm 142 (271)
T 3fut_A 111 GSLLVANLPYHIATPLVTRLLKT-GRFARLVFL 142 (271)
T ss_dssp TEEEEEEECSSCCHHHHHHHHHH-CCEEEEEEE
T ss_pred ccEEEecCcccccHHHHHHHhcC-CCCCEEEEE
Confidence 46789999999999999999977 555544443
No 233
>3ts2_A Protein LIN-28 homolog A; microrna biogenesis, protein-RNA complex, PRE-element, CCHC knuckle; HET: GMP; 2.01A {Mus musculus} PDB: 3trz_A* 3ts0_A*
Probab=30.13 E-value=5.5 Score=28.35 Aligned_cols=28 Identities=25% Similarity=0.254 Sum_probs=16.2
Q ss_pred HHHHHHhhhCCCeEEEEEEeCCCCCcceEEEEEEc
Q 029496 35 EDIKELFSEVGELKRCSVHFDRSGRSKGTAEVVLT 69 (192)
Q Consensus 35 ~~L~~~f~~~G~i~~v~i~~~~tg~~~g~afV~f~ 69 (192)
+++.++|...|.|+.... .+||+||+-.
T Consensus 2 ~~~~~l~~~~G~Vkwfn~-------~kGfGFI~~~ 29 (148)
T 3ts2_A 2 ADEPQLLHGAGICKWFNV-------RMGFGFLSMT 29 (148)
T ss_dssp ----CCEEEEEEEEEEET-------TTTEEEEEEE
T ss_pred CcccccccceeEEEEEEC-------CCCeeEEeeC
Confidence 455666766776655432 3789999875
No 234
>3dd7_B PHD, prevent HOST death protein; all alpha, ribosome inhibitor; HET: MSE; 1.70A {Enterobacteria phage P1}
Probab=29.37 E-value=28 Score=16.51 Aligned_cols=11 Identities=27% Similarity=0.362 Sum_probs=8.8
Q ss_pred HhHHHHHHHHH
Q 029496 173 LDADLEKYHIE 183 (192)
Q Consensus 173 lD~el~~~~~~ 183 (192)
||+|.+.+|..
T Consensus 2 lDaEFaaIm~~ 12 (23)
T 3dd7_B 2 LDAEFASLFDT 12 (26)
T ss_pred chhHHHHHHHH
Confidence 78888888874
No 235
>3uzu_A Ribosomal RNA small subunit methyltransferase A; ssgcid, seattle structural genomics center for infectio disease; 1.75A {Burkholderia pseudomallei}
Probab=27.23 E-value=18 Score=28.32 Aligned_cols=34 Identities=21% Similarity=0.160 Sum_probs=25.8
Q ss_pred CEEEEcCCCCCCCHHHHHHHhhhCCCeEEEEEEe
Q 029496 21 TKLYISNLEYGVSNEDIKELFSEVGELKRCSVHF 54 (192)
Q Consensus 21 ~~l~V~nL~~~~te~~L~~~f~~~G~i~~v~i~~ 54 (192)
.-+.|+|||+.++...|..++.....+..+.++.
T Consensus 115 ~~~vv~NlPY~iss~il~~ll~~~~~~~~~~~m~ 148 (279)
T 3uzu_A 115 SLRIIGNLPYNISSPLLFHLMSFAPVVIDQHFML 148 (279)
T ss_dssp CEEEEEECCHHHHHHHHHHHGGGGGGEEEEEEEE
T ss_pred ceEEEEccCccccHHHHHHHHhccCCccEEEEEe
Confidence 4578999999999999999997654555554443
No 236
>2pk2_A Cyclin-T1, protein TAT; TAR, twinning, transcription regulation P- TEFB, cell cycle; 2.67A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 2w2h_C
Probab=27.22 E-value=13 Score=30.30 Aligned_cols=6 Identities=17% Similarity=0.080 Sum_probs=2.2
Q ss_pred CHHHHH
Q 029496 33 SNEDIK 38 (192)
Q Consensus 33 te~~L~ 38 (192)
++++|+
T Consensus 230 t~~~l~ 235 (358)
T 2pk2_A 230 TLELLD 235 (358)
T ss_dssp CHHHHH
T ss_pred CHHHHH
Confidence 333333
No 237
>3lqv_P Splicing factor 3B subunit 1; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} PDB: 2f9d_P 2f9j_P
Probab=24.17 E-value=43 Score=18.05 Aligned_cols=11 Identities=55% Similarity=0.570 Sum_probs=9.0
Q ss_pred CCCHHhHhHHH
Q 029496 167 NLSVEDLDADL 177 (192)
Q Consensus 167 ~~~~~~lD~el 177 (192)
+.|.||||+-|
T Consensus 22 pltDEeLD~mL 32 (39)
T 3lqv_P 22 PLSDEELDAMF 32 (39)
T ss_dssp CCCHHHHHHTC
T ss_pred CCCHHHHHHhC
Confidence 78999999754
No 238
>3swz_A Steroid 17-alpha-hydroxylase/17,20 lyase; cytochrome P450, CYP17A1, P450C17, P450 17A1, monooxyg 17A-hydroxylase, heme protein; HET: HEM TOK; 2.40A {Homo sapiens} PDB: 3ruk_A*
Probab=23.77 E-value=1.2e+02 Score=24.81 Aligned_cols=49 Identities=10% Similarity=0.135 Sum_probs=35.0
Q ss_pred EEEcCCCCCCC----HHHHHHHhhhCCCeEEEEEEeCCCCCcceEEEEEEcCHHHHHHHHH
Q 029496 23 LYISNLEYGVS----NEDIKELFSEVGELKRCSVHFDRSGRSKGTAEVVLTRRADAIAAVK 79 (192)
Q Consensus 23 l~V~nL~~~~t----e~~L~~~f~~~G~i~~v~i~~~~tg~~~g~afV~f~~~~~a~~Ai~ 79 (192)
-+||||..-.. ...+.++..+||.|..+.+. +.-+|...+++.++.++.
T Consensus 17 PliGnl~~l~~~~~~~~~~~~~~~kYG~i~~~~~g--------~~~~vvv~~p~~~k~il~ 69 (494)
T 3swz_A 17 PLVGSLPFLPRHGHMHNNFFKLQKKYGPIYSVRMG--------TKTTVIVGHHQLAKEVLI 69 (494)
T ss_dssp CEEEEESSCTTSSCHHHHHHHTHHHHCSEEEEEET--------TEEEEEECSHHHHHHHHT
T ss_pred CeEcchHHhCCCCchhHHHHHHHHHcCCEEEEEeC--------CCCEEEECCHHHHHHHHH
Confidence 36888765432 35677778899999887763 234677788999988874
No 239
>4a4j_A Pacszia, cation-transporting ATPase PACS; hydrolase, copper homeostasis, zinc homeostasis, ATX1, metal-transporting atpases; 1.25A {Synechocystis} PDB: 4a48_A 2gcf_A 2xmw_A
Probab=23.36 E-value=1.1e+02 Score=17.16 Aligned_cols=55 Identities=20% Similarity=0.294 Sum_probs=37.2
Q ss_pred CEEEEcCCCCCCCHHHHHHHhhhCCCeEEEEEEeCCCCCcceEEEEEEc---CHHHHHHHHHH
Q 029496 21 TKLYISNLEYGVSNEDIKELFSEVGELKRCSVHFDRSGRSKGTAEVVLT---RRADAIAAVKR 80 (192)
Q Consensus 21 ~~l~V~nL~~~~te~~L~~~f~~~G~i~~v~i~~~~tg~~~g~afV~f~---~~~~a~~Ai~~ 80 (192)
.++.|.++.-..-...++..+.....|..+.+... .+.+.|+|. +.++...+|+.
T Consensus 4 ~~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~-----~~~~~v~~~~~~~~~~i~~~i~~ 61 (69)
T 4a4j_A 4 INLQLEGMDCTSCASSIERAIAKVPGVQSCQVNFA-----LEQAVVSYHGETTPQILTDAVER 61 (69)
T ss_dssp EEEEEESCCSHHHHHHHHHHHHTSTTEEEEEEETT-----TTEEEEEECTTCCHHHHHHHHHH
T ss_pred EEEEECCeecHHHHHHHHHHHhcCCCeEEEEEEec-----CCEEEEEECCCCCHHHHHHHHHH
Confidence 35677777766666788888988877888777543 346778874 34455566654
No 240
>1wvf_A 4-cresol dehydrogenase [hydroxylating] flavoprote subunit; flavoprotein, electron-transfer, FAD, oxidoreductase; HET: FAD; 1.30A {Pseudomonas putida} SCOP: d.58.32.1 d.145.1.1 PDB: 1wve_A* 1dii_A* 1diq_A*
Probab=23.20 E-value=51 Score=28.03 Aligned_cols=44 Identities=16% Similarity=0.228 Sum_probs=29.9
Q ss_pred HHHHHh--hhCCCeEEEEEEeCCCCCcceEEEEEEcCHHHHHHHHH
Q 029496 36 DIKELF--SEVGELKRCSVHFDRSGRSKGTAEVVLTRRADAIAAVK 79 (192)
Q Consensus 36 ~L~~~f--~~~G~i~~v~i~~~~tg~~~g~afV~f~~~~~a~~Ai~ 79 (192)
+|..+| +.+|-|.++.+...+.......+++.|.+.+++..++.
T Consensus 217 ~l~~l~~g~~lGiVt~~~l~l~p~p~~~~~~~~~f~~~~~~~~~~~ 262 (520)
T 1wvf_A 217 TLDGMFTQANYGICTKMGFWLMPKPPVFKPFEVIFEDEADIVEIVD 262 (520)
T ss_dssp CCHHHHTTSSSCEEEEEEEECEECCSEEEEEEEEECCGGGHHHHHH
T ss_pred chhhhccCCceEEEEEEEEEEEecCCeEEEEEEEeCCHHHHHHHHH
Confidence 456667 36888888877665544445567899998777766443
No 241
>2lfv_A Protein DAMX; cell division, peptidoglycan binding domain, murein binding bacterial cell division protein, RNP fold, RNP domain, cell; NMR {Escherichia coli}
Probab=28.17 E-value=18 Score=24.10 Aligned_cols=59 Identities=17% Similarity=0.133 Sum_probs=35.6
Q ss_pred CCEEEEcCCCCCCCHHHHHHHhhhCCCeEEEEEEeCC-CCCcceEE--EEEEcCHHHHHHHHHHhCC
Q 029496 20 GTKLYISNLEYGVSNEDIKELFSEVGELKRCSVHFDR-SGRSKGTA--EVVLTRRADAIAAVKRYNN 83 (192)
Q Consensus 20 ~~~l~V~nL~~~~te~~L~~~f~~~G~i~~v~i~~~~-tg~~~g~a--fV~f~~~~~a~~Ai~~l~~ 83 (192)
..+|-|..+ .++++|..+..+.. +..+.+.... +|+. .|. +=.|.+.++|++|+..|..
T Consensus 25 ~YTLQL~a~---~~~~~l~~f~~~~~-l~~~~v~~t~rnGk~-WyvVlyG~Y~s~~~A~~A~~~LP~ 86 (106)
T 2lfv_A 25 HYTLQLSSS---SNYDNLNGWAKKEN-LKNYVVYETTRNGQP-WYVLVSGVYASKEEAKKAVSTLPA 86 (106)
Confidence 445555433 35566777777765 4445554433 4433 232 3378999999999988754
No 242
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=22.01 E-value=7.7 Score=32.56 Aligned_cols=14 Identities=14% Similarity=0.211 Sum_probs=10.9
Q ss_pred HHHHhhhCCCeEEE
Q 029496 37 IKELFSEVGELKRC 50 (192)
Q Consensus 37 L~~~f~~~G~i~~v 50 (192)
|..||.++++|..|
T Consensus 9 L~~lF~p~pPl~~~ 22 (437)
T 3pgw_S 9 LLALFAPRDPIPYL 22 (437)
T ss_pred HHHhcCCCCCCcCC
Confidence 67788888887766
No 243
>1qyr_A KSGA, high level kasugamycin resistance protein, S-adenosylMet; adenosine dimethyltransferase, rRNA modification, transferase, translation; 2.10A {Escherichia coli} SCOP: c.66.1.24 PDB: 4adv_V 3tpz_A
Probab=21.98 E-value=73 Score=24.26 Aligned_cols=32 Identities=22% Similarity=0.254 Sum_probs=23.2
Q ss_pred CEEEEcCCCCCCCHHHHHHHhhhCCCeEEEEE
Q 029496 21 TKLYISNLEYGVSNEDIKELFSEVGELKRCSV 52 (192)
Q Consensus 21 ~~l~V~nL~~~~te~~L~~~f~~~G~i~~v~i 52 (192)
.-+.|+|||+.++...|..++...-.+..+.+
T Consensus 91 ~~~vvsNlPY~i~~~il~~ll~~~~~~~~~~~ 122 (252)
T 1qyr_A 91 PLRVFGNLPYNISTPLMFHLFSYTDAIADMHF 122 (252)
T ss_dssp CEEEEEECCTTTHHHHHHHHHTTGGGEEEEEE
T ss_pred ceEEEECCCCCccHHHHHHHHhcCCCcceEEE
Confidence 35789999999999988888865434444433
No 244
>3ced_A Methionine import ATP-binding protein METN 2; ABC transporter, NIL domain, structur genomics, PSI-2, protein structure initiative; 2.15A {Staphylococcus aureus subsp} SCOP: d.58.18.13
Probab=21.72 E-value=1.3e+02 Score=19.18 Aligned_cols=62 Identities=6% Similarity=-0.115 Sum_probs=38.1
Q ss_pred EEEEcCCCCCCCHHHHHHHhhhCCCeEEEEEEe-CC-CCCcceEEEEEEc--CHHHHHHHHHHhCC
Q 029496 22 KLYISNLEYGVSNEDIKELFSEVGELKRCSVHF-DR-SGRSKGTAEVVLT--RRADAIAAVKRYNN 83 (192)
Q Consensus 22 ~l~V~nL~~~~te~~L~~~f~~~G~i~~v~i~~-~~-tg~~~g~afV~f~--~~~~a~~Ai~~l~~ 83 (192)
.|.|.-....+.+..|..+..+|+--.+|..-. +. .+.+-|.-+|++. +.++.++|+..|..
T Consensus 22 lvrL~f~g~~~~~PvIs~l~~~~~v~vnIL~g~I~~i~~~~~G~L~v~l~G~~~~~~~~ai~~L~~ 87 (98)
T 3ced_A 22 IVRLVFAGSTTTEPIVSSLSTAYDIKINILEANIKNTKNGTVGFLVLHIPYISSVDFGKFEKELIE 87 (98)
T ss_dssp EEEEEEEEESCHHHHHHHHHHHHTCCCEEEEEEEEEETTEEEEEEEEEESCCCHHHHHHHHHHHHH
T ss_pred EEEEEECCCccCchHHHHHHHHHCCcEEEEEEEeEEeCCEeEEEEEEEEeCCCHHHHHHHHHHHHH
Confidence 444443444566777888888887433332111 22 4556788888887 46777888877643
No 245
>1onv_B Serine phosphatase FCP1A; transcription factor, human general transcription factor TFIIF, RAP74, RNA polymerase II CTD phosphatase; NMR {Homo sapiens}
Probab=21.49 E-value=34 Score=21.19 Aligned_cols=11 Identities=27% Similarity=0.510 Sum_probs=7.5
Q ss_pred HhHhHHHHHHH
Q 029496 171 EDLDADLEKYH 181 (192)
Q Consensus 171 ~~lD~el~~~~ 181 (192)
+-|.+||.|||
T Consensus 73 aaleaelnDfm 83 (83)
T 1onv_B 73 KALEAELNDLM 83 (83)
T ss_dssp HHHHHHHHHHC
T ss_pred HHHHHHHhccC
Confidence 34667787775
No 246
>3dxs_X Copper-transporting ATPase RAN1; CXXC motif, ferredoxin-like fold, ATP- binding, ethylene signaling pathway, hydrolase, ION transport; 1.70A {Arabidopsis thaliana} SCOP: d.58.17.0
Probab=21.20 E-value=1.3e+02 Score=17.17 Aligned_cols=55 Identities=13% Similarity=0.277 Sum_probs=38.8
Q ss_pred CEEEEcCCCCCCCHHHHHHHhhhCCCeEEEEEEeCCCCCcceEEEEEEc----CHHHHHHHHHH
Q 029496 21 TKLYISNLEYGVSNEDIKELFSEVGELKRCSVHFDRSGRSKGTAEVVLT----RRADAIAAVKR 80 (192)
Q Consensus 21 ~~l~V~nL~~~~te~~L~~~f~~~G~i~~v~i~~~~tg~~~g~afV~f~----~~~~a~~Ai~~ 80 (192)
.++.|.++.-..-...++..+.....|..+.+... .+.+.|+|. +.++...+|+.
T Consensus 4 ~~~~v~gm~C~~C~~~ie~~l~~~~gv~~~~v~~~-----~~~~~v~~~~~~~~~~~i~~~i~~ 62 (74)
T 3dxs_X 4 IQVGVTGMTCAACSNSVEAALMNVNGVFKASVALL-----QNRADVVFDPNLVKEEDIKEEIED 62 (74)
T ss_dssp EEEEEECCCSHHHHHHHHHHHHTSTTEEEEEEEGG-----GTEEEEEECTTTCCHHHHHHHHHH
T ss_pred EEEEECCcCCHHHHHHHHHHHhcCCCEEEEEEEec-----CCEEEEEECCCCCCHHHHHHHHHH
Confidence 35677777766566778888888777877777533 456888885 45667777765
No 247
>2i9x_A Putative septation protein spovg; APC86317.1, staphylococcus epidermidis ATCC 12228, ST genomics, PSI-2, protein structure initiative; 1.80A {Staphylococcus epidermidis} SCOP: d.366.1.1
Probab=21.05 E-value=1.5e+02 Score=18.84 Aligned_cols=25 Identities=16% Similarity=0.268 Sum_probs=20.3
Q ss_pred CeEEEEEEeCC-CCCcceEEEEEEcC
Q 029496 46 ELKRCSVHFDR-SGRSKGTAEVVLTR 70 (192)
Q Consensus 46 ~i~~v~i~~~~-tg~~~g~afV~f~~ 70 (192)
+|.+|+|..-. .++-++||=|+|.+
T Consensus 5 ~iTdVri~~~~~~g~lka~asVt~dd 30 (87)
T 2i9x_A 5 KVTDVRLRKIQTDGRMKALVSITLDE 30 (87)
T ss_dssp CEEEEEEEECCSSSSEEEEEEEEETT
T ss_pred EEEEEEEEEcCCCCCEEEEEEEEECC
Confidence 57788877766 78889999999975
No 248
>3tqs_A Ribosomal RNA small subunit methyltransferase A; protein synthesis; 1.98A {Coxiella burnetii} SCOP: c.66.1.0
Probab=20.08 E-value=26 Score=26.98 Aligned_cols=31 Identities=23% Similarity=0.344 Sum_probs=24.0
Q ss_pred EEEcCCCCCCCHHHHHHHhhhCCCeEEEEEE
Q 029496 23 LYISNLEYGVSNEDIKELFSEVGELKRCSVH 53 (192)
Q Consensus 23 l~V~nL~~~~te~~L~~~f~~~G~i~~v~i~ 53 (192)
..|+|||+.++...|..++.....+..+.++
T Consensus 99 ~vv~NlPY~is~~il~~ll~~~~~~~~~~lm 129 (255)
T 3tqs_A 99 RVVGNLPYNISTPLLFHLFSQIHCIEDMHFM 129 (255)
T ss_dssp EEEEECCHHHHHHHHHHHHHTGGGEEEEEEE
T ss_pred EEEecCCcccCHHHHHHHHhCCCChheEEEE
Confidence 4789999999999999999865555555444
Done!