BLAST Results

Query Summary

Your job contains 1 sequence.

Parameters
Threshold: 0.001
Maximum number of alignments shown: 100
BLAST filter: on

Query Sequence

>029497
MAASLATQSMLASPVAARVTGIRRSGANQLSSVKYLPSLRRNVNLSVRCTAEDEQQQQQK
DDQPTIPKAEPQPPKKPRMSTGFSEVFAFSGPAPERINGRLAMIGFVAALGVEISKGQDV
FAQLSDGGVAWFLGTSVLLTVASLVPLFKGVSVESKSDGFMTSDAELWNGRFAMLGLVAL
AFTEFVKGGTLV

High Scoring Gene Products

Symbol, full name Information P value
ELIP1
EARLY LIGHT-INDUCABLE PROTEIN
protein from Arabidopsis thaliana 1.8e-55
ELIP2
EARLY LIGHT-INDUCIBLE PROTEIN 2
protein from Arabidopsis thaliana 1.2e-49

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Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  029497
        (192 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

TAIR|locus:2094354 - symbol:ELIP1 "EARLY LIGHT-INDUCABLE ...   572  1.8e-55   1
TAIR|locus:2130085 - symbol:ELIP2 "EARLY LIGHT-INDUCIBLE ...   517  1.2e-49   1


>TAIR|locus:2094354 [details] [associations]
            symbol:ELIP1 "EARLY LIGHT-INDUCABLE PROTEIN" species:3702
            "Arabidopsis thaliana" [GO:0009507 "chloroplast" evidence=ISM]
            [GO:0016168 "chlorophyll binding" evidence=ISS] [GO:0009409
            "response to cold" evidence=IEP] [GO:0080167 "response to karrikin"
            evidence=IEP] [GO:0009411 "response to UV" evidence=RCA]
            [GO:0009718 "anthocyanin-containing compound biosynthetic process"
            evidence=RCA] [GO:0009744 "response to sucrose stimulus"
            evidence=RCA] [GO:0009813 "flavonoid biosynthetic process"
            evidence=RCA] [GO:0010224 "response to UV-B" evidence=RCA]
            Pfam:PF00504 EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0009409
            GO:GO:0080167 InterPro:IPR022796 InterPro:IPR023329
            SUPFAM:SSF103511 EMBL:AB022223 EMBL:U89014 EMBL:AY057560
            EMBL:AY075672 EMBL:AY097423 EMBL:AY085317 IPI:IPI00518629
            RefSeq:NP_188923.1 UniGene:At.20776 ProteinModelPortal:P93735
            SMR:P93735 STRING:P93735 PaxDb:P93735 PRIDE:P93735
            EnsemblPlants:AT3G22840.1 GeneID:821855 KEGG:ath:AT3G22840
            TAIR:At3g22840 eggNOG:NOG260229 HOGENOM:HOG000237710
            InParanoid:P93735 OMA:GVRCMAE PhylomeDB:P93735
            ProtClustDB:CLSN2684167 Genevestigator:P93735 Uniprot:P93735
        Length = 195

 Score = 572 (206.4 bits), Expect = 1.8e-55, P = 1.8e-55
 Identities = 119/195 (61%), Positives = 142/195 (72%)

Query:     5 LATQSMLASPVAARVTGIRRSGANQLSSVKYLPSLRRNVNLSVRCTAXXXXXXXXXXXXP 64
             +AT S     V A     R+   N+L S    P+L+RN  + VRC A            P
Sbjct:     1 MATASFNMQSVFAGGLTTRKINTNKLFSAGSFPNLKRNYPVGVRCMAEGGPTNEDSSPAP 60

Query:    65 T------IPKA-EPQPPKKPRMSTGFSEVFAFSGPAPERINGRLAMIGFVAALGVEISKG 117
             +      +PK+  P PP KP++ST FS++ AFSGPAPERINGRLAM+GFVAAL VE+SKG
Sbjct:    61 STSAAQPLPKSPSPPPPMKPKVSTKFSDLLAFSGPAPERINGRLAMVGFVAALAVELSKG 120

Query:   118 QDVFAQLSDGGVAWFLGTSVLLTVASLVPLFKGVSVESKSDGFMTSDAELWNGRFAMLGL 177
             ++V AQ+SDGGV+WFLGT+ +LT+ASLVPLFKG+SVESKS G MTSDAELWNGRFAMLGL
Sbjct:   121 ENVLAQISDGGVSWFLGTTAILTLASLVPLFKGISVESKSKGIMTSDAELWNGRFAMLGL 180

Query:   178 VALAFTEFVKGGTLV 192
             VALAFTEFVKGGTLV
Sbjct:   181 VALAFTEFVKGGTLV 195


>TAIR|locus:2130085 [details] [associations]
            symbol:ELIP2 "EARLY LIGHT-INDUCIBLE PROTEIN 2"
            species:3702 "Arabidopsis thaliana" [GO:0009507 "chloroplast"
            evidence=ISM] [GO:0016168 "chlorophyll binding" evidence=ISS]
            [GO:0010114 "response to red light" evidence=IEP] [GO:0010218
            "response to far red light" evidence=IEP] [GO:0010380 "regulation
            of chlorophyll biosynthetic process" evidence=IMP] [GO:0010224
            "response to UV-B" evidence=IEP;RCA] [GO:0009411 "response to UV"
            evidence=RCA] [GO:0009744 "response to sucrose stimulus"
            evidence=RCA] [GO:0009813 "flavonoid biosynthetic process"
            evidence=RCA] Pfam:PF00504 EMBL:CP002687 GO:GO:0010218
            GO:GO:0010114 GO:GO:0010380 GO:GO:0010224 InterPro:IPR022796
            InterPro:IPR023329 SUPFAM:SSF103511 ProtClustDB:CLSN2684167
            EMBL:AF370266 EMBL:AY063083 IPI:IPI00546964 RefSeq:NP_567438.1
            UniGene:At.4292 UniGene:At.74116 ProteinModelPortal:Q94K66
            SMR:Q94K66 STRING:Q94K66 PRIDE:Q94K66 EnsemblPlants:AT4G14690.1
            GeneID:827119 KEGG:ath:AT4G14690 TAIR:At4g14690 InParanoid:Q94K66
            OMA:TRNIRNT PhylomeDB:Q94K66 Genevestigator:Q94K66 Uniprot:Q94K66
        Length = 193

 Score = 517 (187.1 bits), Expect = 1.2e-49, P = 1.2e-49
 Identities = 111/199 (55%), Positives = 136/199 (68%)

Query:     3 ASLATQSMLASPVAARVT-GIRRSGANQLSSVKYLPSLRRNVNLSVRCTAX--------X 53
             AS   QS+ A+P     T  IR +  NQL   +  P       + VRC A          
Sbjct:     4 ASFNMQSVFAAPSGVLTTRNIRNT--NQLFFKRIAP-------VGVRCMAQGDPIKEDPS 54

Query:    54 XXXXXXXXXXPTIPKAEPQPPKKPRMSTGFSEVFAFSGPAPERINGRLAMIGFVAALGVE 113
                       P +P++ P P  KP++ST F ++ AFSGPAPERINGRLAM+GFVAA+ +E
Sbjct:    55 VPSTSTSATPPQMPQSPPPPVSKPKVSTKFGDLLAFSGPAPERINGRLAMVGFVAAIAME 114

Query:   114 ISKGQDVFAQLSDGGVAWFLGTSVLLTVASLVPLFKGVSVESKSDGFMTSDAELWNGRFA 173
             +SKG++VFAQ+SDGGV WFLGT+ LLT+AS+VPLFKG+  E+KS GFMTSDAELWNGRFA
Sbjct:   115 LSKGENVFAQISDGGVGWFLGTTALLTLASMVPLFKGIRAEAKSKGFMTSDAELWNGRFA 174

Query:   174 MLGLVALAFTEFVKGGTLV 192
             MLGLVALAFTE+V GGTLV
Sbjct:   175 MLGLVALAFTEYVTGGTLV 193


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.319   0.133   0.380    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      192       180   0.00092  109 3  11 22  0.41    32
                                                     31  0.39    35


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  2
  No. of states in DFA:  567 (60 KB)
  Total size of DFA:  127 KB (2081 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  15.55u 0.16s 15.71t   Elapsed:  00:00:01
  Total cpu time:  15.55u 0.16s 15.71t   Elapsed:  00:00:01
  Start:  Fri May 10 23:33:28 2013   End:  Fri May 10 23:33:29 2013

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