Query 029497
Match_columns 192
No_of_seqs 166 out of 972
Neff 4.7
Searched_HMMs 46136
Date Fri Mar 29 13:51:26 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029497.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/029497hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF00504 Chloroa_b-bind: Chlor 99.9 1.2E-22 2.6E-27 162.8 10.4 104 81-185 13-156 (156)
2 PLN00089 fucoxanthin-chlorophy 99.9 4.2E-21 9.2E-26 163.4 13.3 110 82-192 57-207 (209)
3 PLN00120 fucoxanthin-chlorophy 99.8 6.7E-21 1.5E-25 161.4 8.4 107 81-189 44-195 (202)
4 PLN00101 Photosystem I light-h 99.8 9.9E-21 2.1E-25 165.0 8.3 110 83-192 75-230 (250)
5 PLN00100 light-harvesting comp 99.8 4.2E-20 9E-25 160.7 11.9 107 84-192 58-190 (246)
6 PLN00098 light-harvesting comp 99.8 2.1E-19 4.5E-24 158.0 13.2 115 78-192 78-245 (267)
7 PLN00048 photosystem I light h 99.8 1.6E-19 3.5E-24 158.3 11.7 108 84-192 65-240 (262)
8 PLN00097 photosystem I light h 99.8 3E-19 6.4E-24 155.3 10.3 109 84-192 67-227 (244)
9 PLN00099 light-harvesting comp 99.8 6.8E-19 1.5E-23 153.0 11.8 109 83-192 66-217 (243)
10 PLN00147 light-harvesting comp 99.8 9.8E-19 2.1E-23 152.7 12.6 109 84-192 68-230 (252)
11 PLN00025 photosystem II light 99.8 2.1E-18 4.6E-23 151.3 9.7 108 84-192 76-236 (262)
12 PLN00170 photosystem II light- 99.8 1.2E-17 2.6E-22 146.1 12.7 40 83-122 79-126 (255)
13 PLN00171 photosystem light-ha 99.7 5.4E-18 1.2E-22 152.2 9.6 109 84-192 133-303 (324)
14 PLN00187 photosystem II light- 99.7 4.9E-18 1.1E-22 150.5 8.7 98 93-192 135-265 (286)
15 PHA02337 putative high light i 99.3 4.2E-12 9.1E-17 80.8 4.2 31 161-191 1-31 (35)
16 PLN00014 light-harvesting-like 99.0 3.6E-10 7.8E-15 98.1 5.4 49 91-139 159-209 (250)
17 PHA02337 putative high light i 99.0 5.1E-10 1.1E-14 71.3 3.7 30 92-121 3-32 (35)
18 PLN00101 Photosystem I light-h 98.5 4.1E-08 9E-13 86.1 2.6 47 80-126 185-235 (250)
19 PLN00147 light-harvesting comp 98.5 1E-07 2.2E-12 83.8 4.7 49 79-127 179-236 (252)
20 PLN00097 photosystem I light h 98.4 1.7E-07 3.8E-12 82.0 4.2 48 79-126 177-232 (244)
21 PLN00025 photosystem II light 98.4 2.1E-07 4.5E-12 82.2 4.4 48 79-126 186-241 (262)
22 PLN00100 light-harvesting comp 98.4 1.4E-07 3.1E-12 82.6 2.6 43 84-126 150-195 (246)
23 PLN00099 light-harvesting comp 98.4 4.7E-07 1E-11 79.2 5.1 47 80-126 167-222 (243)
24 PLN00014 light-harvesting-like 98.4 2.3E-07 5.1E-12 80.8 2.8 30 163-192 160-189 (250)
25 PLN00098 light-harvesting comp 98.3 4.2E-07 9.2E-12 80.5 3.9 47 80-126 194-250 (267)
26 PLN00048 photosystem I light h 98.3 4.1E-07 8.8E-12 80.4 3.4 44 83-126 194-245 (262)
27 PLN00187 photosystem II light- 98.3 6.1E-07 1.3E-11 80.2 4.2 44 83-126 219-270 (286)
28 PLN00084 photosystem II subuni 98.3 4.6E-07 9.9E-12 76.4 2.9 31 162-192 135-166 (214)
29 PLN00089 fucoxanthin-chlorophy 98.3 8.3E-07 1.8E-11 76.1 4.0 38 84-121 161-207 (209)
30 PLN00084 photosystem II subuni 98.2 1.8E-06 3.9E-11 72.8 5.3 36 92-127 136-172 (214)
31 PLN00171 photosystem light-ha 98.2 1.3E-06 2.8E-11 79.3 4.3 44 83-126 257-308 (324)
32 PF00504 Chloroa_b-bind: Chlor 98.2 7.4E-07 1.6E-11 71.5 1.9 30 161-190 28-57 (156)
33 PLN00170 photosystem II light- 98.1 1.7E-06 3.7E-11 76.3 2.2 41 83-124 196-253 (255)
34 PLN00120 fucoxanthin-chlorophy 97.9 1.4E-05 3.1E-10 68.2 4.9 26 93-118 170-195 (202)
35 PLN02449 ferrochelatase 72.7 3 6.6E-05 40.2 2.8 21 172-192 463-483 (485)
36 PLN02449 ferrochelatase 60.8 6.7 0.00014 37.9 2.5 22 101-122 463-484 (485)
37 COG3087 FtsN Cell division pro 53.8 14 0.00031 33.2 3.2 19 93-111 203-221 (264)
38 PF01524 Gemini_V1: Geminiviru 34.9 19 0.00042 26.8 1.0 23 84-108 2-24 (78)
39 KOG2675 Adenylate cyclase-asso 26.4 81 0.0018 30.6 3.8 22 93-121 257-278 (480)
40 PLN03132 NADH dehydrogenase (u 24.6 59 0.0013 31.4 2.5 23 63-85 12-34 (461)
No 1
>PF00504 Chloroa_b-bind: Chlorophyll A-B binding protein; InterPro: IPR022796 The light-harvesting complex (LHC) consists of chlorophylls A and B and the chlorophyll A-B binding protein. LHC functions as a light receptor that captures and delivers excitation energy to photosystems I and II with which it is closely associated. Under changing light conditions, the reversible phosphorylation of light harvesting chlorophyll a/b binding proteins (LHCII) represents a system for balancing the excitation energy between the two photosystems []. The N terminus of the chlorophyll A-B binding protein extends into the stroma where it is involved with adhesion of granal membranes and photo-regulated by reversible phosphorylation of its threonine residues []. Both these processes are believed to mediate the distribution of excitation energy between photosystems I and II. This family also includes the photosystem II protein PsbS, which plays a role in energy-dependent quenching that increases thermal dissipation of excess absorbed light energy in the photosystem [].; PDB: 2O01_2 2WSF_2 2WSC_2 3LW5_2 2WSE_2 1RWT_D 2BHW_C 1VCR_A.
Probab=99.88 E-value=1.2e-22 Score=162.81 Aligned_cols=104 Identities=28% Similarity=0.209 Sum_probs=68.6
Q ss_pred CCcccccCCCC-------CchHHHHHHHHHHHHHHHHHHHHHhCCch---------hhhhh---hh--hhHHHHHHHHHH
Q 029497 81 TGFSEVFAFSG-------PAPERINGRLAMIGFVAALGVEISKGQDV---------FAQLS---DG--GVAWFLGTSVLL 139 (192)
Q Consensus 81 ~~f~D~lgFsg-------~~aEliNGR~AMLGfvg~l~~E~~tg~~~---------~~Q~~---~~--g~~~fl~~~~ll 139 (192)
.| |||+||+. +++|+||||+||||++++++.|+.++.+. |.+.. .. .+...+++++++
T Consensus 13 ~g-fDPlgl~~~~~~~~~R~aEl~hGR~AMLa~~g~~v~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ig~~ 91 (156)
T PF00504_consen 13 YG-FDPLGLSSDPDFAWYREAELKHGRVAMLAFVGALVQEAGTGFPGVPSFLGQPAWAEAGGIPVPAAGWAQILLFIGAL 91 (156)
T ss_dssp TS-SSTTTTTTSHHHHHHHHHHHHHHHHHHHHHHHHHHCHCHSTTTSSS-SSTSSSSSSTTSSSSHSHHHHHHHHHHHHH
T ss_pred CC-CChhhcccchhHHHHHHhHHHhhhhhhhhhHHHHHHHHhccCCcccccccccchhhhhhhhhhhHHHHHHHHHHhHh
Confidence 45 99999984 58999999999999999999999976432 22211 11 111234455566
Q ss_pred HHHhhhccccCC------CCCCCCC-----C--------CCChHHHHHHHHHHHHHHHHHHHHHH
Q 029497 140 TVASLVPLFKGV------SVESKSD-----G--------FMTSDAELWNGRFAMLGLVALAFTEF 185 (192)
Q Consensus 140 ~~asl~P~~~g~------~~e~~~~-----G--------~ft~~AEl~NGRlAMlG~~gl~~~E~ 185 (192)
+..+....+... ...+++. | .+++++|+||||||||||+++++||.
T Consensus 92 e~~~~~~~~~~~~~~~~~~~~pG~~~~dplgl~~~~~~~~~~~~~El~NGRlAMla~~g~~~~e~ 156 (156)
T PF00504_consen 92 EPWRQQGVPEPGEGGGKDGRYPGDLGFDPLGLAKDPEEKEFMQLAELKNGRLAMLAFAGFVAQEA 156 (156)
T ss_dssp HHHHHHHTTTCCTTSSSSSSSSSSSSSSTSSTSSSCHSHHCHHHHHHHHHHHHHHHHHHHHHHH-
T ss_pred hhhhcccccCCcccccccccCccccccchhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 655443332110 1111111 1 24679999999999999999999984
No 2
>PLN00089 fucoxanthin-chlorophyll a/c binding protein; Provisional
Probab=99.86 E-value=4.2e-21 Score=163.42 Aligned_cols=110 Identities=18% Similarity=0.212 Sum_probs=74.4
Q ss_pred CcccccCCCC---------CchHHHHHHHHHHHHHHHHHHHHHhCCchh-------------hhhhhhh-hHHHHHHHHH
Q 029497 82 GFSEVFAFSG---------PAPERINGRLAMIGFVAALGVEISKGQDVF-------------AQLSDGG-VAWFLGTSVL 138 (192)
Q Consensus 82 ~f~D~lgFsg---------~~aEliNGR~AMLGfvg~l~~E~~tg~~~~-------------~Q~~~~g-~~~fl~~~~l 138 (192)
.+||||||+. +++|++|||+||||++|.+++|..+..+.. +++...+ +.++++++++
T Consensus 57 ~~fDPlgl~~~~~~~~~~~r~~ElkhGR~AMlA~~G~~~~~~~~~pG~~~~~~~~p~~~~a~~~~~~~g~~~Qi~~~ig~ 136 (209)
T PLN00089 57 KKFDPLGLAEKVEEFLPWFRESELKHGRAAMLAVAGFIAPDFVRIPGEAYSFAAIPKTIDAHDALLKSGAMIQIFAWIGF 136 (209)
T ss_pred cCcCCccCCCCCHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCCccccccccccHHHHHHhhcccccHHHHHHHHHH
Confidence 3699999974 269999999999999999999997644321 1111112 2344555666
Q ss_pred HHHHhhhcc----ccCCCCCCCCCC--C--C----------ChHHHHHHHHHHHHHHHHHHHHHHHhCCcCC
Q 029497 139 LTVASLVPL----FKGVSVESKSDG--F--M----------TSDAELWNGRFAMLGLVALAFTEFVKGGTLV 192 (192)
Q Consensus 139 l~~asl~P~----~~g~~~e~~~~G--~--f----------t~~AEl~NGRlAMlG~~gl~~~E~vTG~~l~ 192 (192)
+++....+. ..+ ...++++| + | .+.+|++||||||+||+|+++||.+||++++
T Consensus 137 ~E~~~~~~~~~~~~~~-~~~PGd~gfdplgl~~~d~~~~~~~~~~El~NGRlAM~a~~g~~~~~~~tg~g~~ 207 (209)
T PLN00089 137 VDLAVSAPAAAAAAEF-DRTPGDFGFDLLALYPKDAAKMEKKKDKELKNGRLAMVAIGGIATGSAITGHGFP 207 (209)
T ss_pred HHHHHhhccccccccC-CCCCCCcCccccccCCCCHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHcCCCCC
Confidence 664322221 111 22344443 1 1 1367999999999999999999999999874
No 3
>PLN00120 fucoxanthin-chlorophyll a-c binding protein; Provisional
Probab=99.84 E-value=6.7e-21 Score=161.43 Aligned_cols=107 Identities=22% Similarity=0.248 Sum_probs=72.8
Q ss_pred CCcccccCCCC----------CchHHHHHHHHHHHHHHHHHHHH-HhCCc--------h---------hhhhhhhhhHHH
Q 029497 81 TGFSEVFAFSG----------PAPERINGRLAMIGFVAALGVEI-SKGQD--------V---------FAQLSDGGVAWF 132 (192)
Q Consensus 81 ~~f~D~lgFsg----------~~aEliNGR~AMLGfvg~l~~E~-~tg~~--------~---------~~Q~~~~g~~~f 132 (192)
.|+|||+||+. +++|++|||+||++++|.+++|+ .+-.+ + +.++...++.++
T Consensus 44 ~g~fDPlgl~~~~~~~~~~~~r~~ElkhGRlAMlA~~G~~~~~~g~~~Pg~~~~~g~~~~~~p~~~~a~~~vp~~g~~qi 123 (202)
T PLN00120 44 LGFFDPLGLVDDGDQEKFDRLRYVEIKHGRISMLAVVGYLVTEAGIRLPGDIDYSGTSFSDIPNGFAALDAIPTAGLLQI 123 (202)
T ss_pred CCCCCCCccCCCCCHHHHHHHHHHHhhcccHHHHhhccceeecccccCCCccccccccccccccchhhhhhcchhHHHHH
Confidence 47899999973 37999999999999999999996 22111 1 122333345555
Q ss_pred HHHHHHHHHHhhhccccCCCCCCC-------CCCCCC----------hHHHHHHHHHHHHHHHHHHHHHHHhCC
Q 029497 133 LGTSVLLTVASLVPLFKGVSVESK-------SDGFMT----------SDAELWNGRFAMLGLVALAFTEFVKGG 189 (192)
Q Consensus 133 l~~~~ll~~asl~P~~~g~~~e~~-------~~G~ft----------~~AEl~NGRlAMlG~~gl~~~E~vTG~ 189 (192)
+++++++++.... ...|....++ ++| |+ +.+||+|||||||||+|+++||+++|.
T Consensus 124 ~~~ig~~E~~~~~-~~~~~~~~pGd~~~g~~d~g-fdp~~~~~~~~~~~~EL~NGRLAMiai~G~~~qe~l~g~ 195 (202)
T PLN00120 124 LAFIGFLELAVMK-DITGEGEFVGDFRNGYIDFG-WDSFDEETKLKKRAIELNQGRAAQMGILALMVHEQLGVE 195 (202)
T ss_pred HHHHHHHHHHhhc-ccccCCCCCCccCCCCCCCC-CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCC
Confidence 6667777754432 1111111122 333 33 378999999999999999999999996
No 4
>PLN00101 Photosystem I light-harvesting complex type 4 protein; Provisional
Probab=99.83 E-value=9.9e-21 Score=164.97 Aligned_cols=110 Identities=22% Similarity=0.290 Sum_probs=71.5
Q ss_pred cccccCCCC--------CchHHHHHHHHHHHHHHHHHHHHHhCCchhh---hhhhhhh---------HHH-HHHHHHHHH
Q 029497 83 FSEVFAFSG--------PAPERINGRLAMIGFVAALGVEISKGQDVFA---QLSDGGV---------AWF-LGTSVLLTV 141 (192)
Q Consensus 83 f~D~lgFsg--------~~aEliNGR~AMLGfvg~l~~E~~tg~~~~~---Q~~~~g~---------~~f-l~~~~ll~~ 141 (192)
-|||+||++ .++|++||||||||++|+++.|++++.+++. ++..+.. .++ ++.++.+++
T Consensus 75 GFDPlGl~~d~~~~~~~r~aEl~hGRlAMla~~G~l~~e~l~~~g~~~~p~w~~ag~~~~~~~~~~l~~ie~~~mg~~E~ 154 (250)
T PLN00101 75 GFDPLGLAEDPENLKWFVQAELVNGRWAMLGVAGMLLPEVFTKIGIINAPQWYDAGKAEYFASSSTLFVIEFILFHYVEI 154 (250)
T ss_pred CCCccccCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhcCCCCcCCCccccccchhhcccchHHHHHHHHHHHHHHH
Confidence 599999975 2789999999999999999999999876542 2222211 111 122333333
Q ss_pred Hhhhc-----------cccCCCCCCCC----CCCCC----------hHHHHHHHHHHHHHHHHHHHHHHHhCCcCC
Q 029497 142 ASLVP-----------LFKGVSVESKS----DGFMT----------SDAELWNGRFAMLGLVALAFTEFVKGGTLV 192 (192)
Q Consensus 142 asl~P-----------~~~g~~~e~~~----~G~ft----------~~AEl~NGRlAMlG~~gl~~~E~vTG~~l~ 192 (192)
..... .|.+...++.+ .|.|+ +.||||||||||++++|+++|+++||++.+
T Consensus 155 ~R~~~~~~pG~~~~~~~~~~~~~~~gd~~YPGG~FDPLgl~~~~~~k~kEIKNGRLAM~A~lGf~~Q~~vTG~gPi 230 (250)
T PLN00101 155 RRWQDIKNPGSVNQDPIFKQYSLPPNEVGYPGGIFNPLNFAPTEEAKEKELANGRLAMLAFLGFVVQHNVTGKGPF 230 (250)
T ss_pred HHhhcccCCCcccccccccccccCCccccCCCCccCccCCCccHHHHHHHHhhcchHHHHHhhHhheehccCCChH
Confidence 32211 11110111111 12232 479999999999999999999999999864
No 5
>PLN00100 light-harvesting complex chlorophyll-a/b protein of photosystem I (Lhca); Provisional
Probab=99.83 E-value=4.2e-20 Score=160.70 Aligned_cols=107 Identities=21% Similarity=0.180 Sum_probs=68.1
Q ss_pred ccccCCCC--------CchHHHHHHHHHHHHHHHHHHHHHhCCchhhhhhhh--hh-HHHHHHHHHHHHHhhhcccc--C
Q 029497 84 SEVFAFSG--------PAPERINGRLAMIGFVAALGVEISKGQDVFAQLSDG--GV-AWFLGTSVLLTVASLVPLFK--G 150 (192)
Q Consensus 84 ~D~lgFsg--------~~aEliNGR~AMLGfvg~l~~E~~tg~~~~~Q~~~~--g~-~~fl~~~~ll~~asl~P~~~--g 150 (192)
|||+||+. +++|++||||||+|++|.+++|+++..++++. ... +. ...+..+.++ +..+++.++ +
T Consensus 58 FDPlgl~~~~~~~~~~r~aEl~hGR~AMla~~G~~~~E~~~~P~w~~a-g~~~~~~~~~~l~~iqil-l~g~~E~~r~~~ 135 (246)
T PLN00100 58 FDPLRLGANPETLPYLQEAELMNGRWAMAATAGILFTDAVGLPKFWEA-GAEKYGLDLQTLVLIQVV-VMAVLEAARYRG 135 (246)
T ss_pred CCccccCCCHHHHHHHHHHHhhcchHHHHHHhhhhHHHHhcccchhhc-chhhhccchhHHHHHHHH-HHHHHhhhcccc
Confidence 99999974 27899999999999999999999764333321 110 00 0111122222 123333322 1
Q ss_pred -----CCCCCCCCC--C--C----ChHHHHHHHHHHHHHHHHHHHHHHHhCCcCC
Q 029497 151 -----VSVESKSDG--F--M----TSDAELWNGRFAMLGLVALAFTEFVKGGTLV 192 (192)
Q Consensus 151 -----~~~e~~~~G--~--f----t~~AEl~NGRlAMlG~~gl~~~E~vTG~~l~ 192 (192)
+..++++++ + | .+.||++||||||+||+|+++|+.+||++++
T Consensus 136 ~~~~g~~~~pg~~~FDPLGl~~~~~K~KEIkNGRLAMlA~lG~~~Q~~vTG~gPl 190 (246)
T PLN00100 136 FMKTGESGVLSFFPFDPTGMDSPEMKVKEVKNGRLAMLAFLGMVSQYAVTGKSPL 190 (246)
T ss_pred cccccccCCCCCCCCCcccccHHHHHHHHHhhhhHHHHHHHHHhhhhhhcCCChH
Confidence 111122222 1 1 2589999999999999999999999999864
No 6
>PLN00098 light-harvesting complex I chlorophyll a/b-binding protein (Lhac); Provisional
Probab=99.81 E-value=2.1e-19 Score=157.96 Aligned_cols=115 Identities=17% Similarity=0.129 Sum_probs=71.4
Q ss_pred CCCCCc-ccccCCCC--------CchHHHHHHHHHHHHHHHHHHHHHhCCchhh---hhhhhhh---------HHH-HHH
Q 029497 78 RMSTGF-SEVFAFSG--------PAPERINGRLAMIGFVAALGVEISKGQDVFA---QLSDGGV---------AWF-LGT 135 (192)
Q Consensus 78 ~~~~~f-~D~lgFsg--------~~aEliNGR~AMLGfvg~l~~E~~tg~~~~~---Q~~~~g~---------~~f-l~~ 135 (192)
....++ |||||++. +++|++||||||||++|++++|++++.+++. ++..+.. .++ ++.
T Consensus 78 ~~pGD~GFDPlgl~~~~~~~~~~r~aEl~HGR~AMLA~~G~~~~e~l~~~g~~~~~~w~~Ag~~~~~~~~~~l~~~q~~l 157 (267)
T PLN00098 78 SLPGDFGFDPLGLGSDPELLKWFAQAELMHSRWAMLAVAGILIPECLERLGFIENFSWYDAGAREYFADPTTLFVVQMVL 157 (267)
T ss_pred CCCCCCCcCccccCCCHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhcCCCcccccccccccchhhccCchHHHHHHHHH
Confidence 333444 99999975 3899999999999999999999988765532 2221111 010 112
Q ss_pred HHHHHHHhhhccc----cC-------------CCCCCCCCC--C--CC----------hHHHHHHHHHHHHHHHHHHHHH
Q 029497 136 SVLLTVASLVPLF----KG-------------VSVESKSDG--F--MT----------SDAELWNGRFAMLGLVALAFTE 184 (192)
Q Consensus 136 ~~ll~~asl~P~~----~g-------------~~~e~~~~G--~--ft----------~~AEl~NGRlAMlG~~gl~~~E 184 (192)
+++++..-+...+ .+ +...+++.+ + |. +.+|++||||||++++|+++|+
T Consensus 158 mG~~E~~R~~~~~~~g~~~~~~~~~~~~~~~~d~~yPGg~~FDPlgl~~~d~~~~~~~k~kEikNGRLAM~A~~G~~~q~ 237 (267)
T PLN00098 158 MGWAEGRRWADLIKPGCVDIEPKLPNKTNPKPDVGYPGGLWFDPMMWGRGSPEPVMVLRTKEIKNGRLAMLAFVGFCFQA 237 (267)
T ss_pred HHHHHHHHhhcccCCccccccccccccccCCCCCCCCCCccCCcccCCCCCHHHHHHHHHHHHhhhHHHHHHHHHHHHhh
Confidence 2333322111111 00 001122211 1 21 4699999999999999999999
Q ss_pred HHhCCcCC
Q 029497 185 FVKGGTLV 192 (192)
Q Consensus 185 ~vTG~~l~ 192 (192)
.+||++++
T Consensus 238 ~vTG~gPl 245 (267)
T PLN00098 238 VYTGEGPI 245 (267)
T ss_pred hhcCCChH
Confidence 99999864
No 7
>PLN00048 photosystem I light harvesting chlorophyll a/b binding protein 3; Provisional
Probab=99.81 E-value=1.6e-19 Score=158.30 Aligned_cols=108 Identities=22% Similarity=0.251 Sum_probs=68.6
Q ss_pred ccccCCCC-------------CchHHHHHHHHHHHHHHHHHHHHHhCCchhhh------hhhh-----------hhHHHH
Q 029497 84 SEVFAFSG-------------PAPERINGRLAMIGFVAALGVEISKGQDVFAQ------LSDG-----------GVAWFL 133 (192)
Q Consensus 84 ~D~lgFsg-------------~~aEliNGR~AMLGfvg~l~~E~~tg~~~~~Q------~~~~-----------g~~~fl 133 (192)
|||||++. +++|++||||||||++|+++.|++++.+++.+ +..+ +....+
T Consensus 65 FDPlGL~~p~~~~~~~~~~~~r~aEL~hGR~AMLa~~G~lv~Ell~~~g~~~~~~~~~w~~ag~~~~~~~~~y~~~p~~l 144 (262)
T PLN00048 65 FDPLGLSDPEGAGGFIEPQWLAYGEVINGRFAMLGAAGAIAPEILGKAGLIPQETALPWFQSGVIPPAGTYDYWADPYTL 144 (262)
T ss_pred CCccccCCccccccchhHHHHHHHHhhcchHHHHHHhhHHHHHHhccCCccccccccccccccccccccccccccchhHH
Confidence 89999974 25799999999999999999999986655421 1111 001111
Q ss_pred HHHHHHHHHhhhccccCCC-------------------------CCCCCCC--C--C---------ChHHHHHHHHHHHH
Q 029497 134 GTSVLLTVASLVPLFKGVS-------------------------VESKSDG--F--M---------TSDAELWNGRFAML 175 (192)
Q Consensus 134 ~~~~ll~~asl~P~~~g~~-------------------------~e~~~~G--~--f---------t~~AEl~NGRlAMl 175 (192)
+.+ .+.++.+++.++... ..+++.+ + | .+.+|++||||||+
T Consensus 145 ~~~-~~~lmg~~E~~R~~~~~~pG~~~~~~~~~~~~~~~~~~d~~yPG~~~fDPlGl~~~~e~~~~~k~~EiknGRLAM~ 223 (262)
T PLN00048 145 FVL-EMALMGFAEHRRAQDYYKPGSMGKQYFLGLEKGLGGSGNPAYPGGPFFNPLGFGKDEKSMKELKLKEVKNGRLAML 223 (262)
T ss_pred HHH-HHHHhhheeeeccccccCCCcccccccccchhccccccccccccccccCccccccchHHHHHHHHHHHhhhHHHHH
Confidence 111 122333344332110 0111111 1 1 14799999999999
Q ss_pred HHHHHHHHHHHhCCcCC
Q 029497 176 GLVALAFTEFVKGGTLV 192 (192)
Q Consensus 176 G~~gl~~~E~vTG~~l~ 192 (192)
+++|+++|+++||++.+
T Consensus 224 A~~G~~~q~~~tg~gp~ 240 (262)
T PLN00048 224 AILGYFIQALVTGVGPF 240 (262)
T ss_pred HhhhHhhhhhhcCCCHH
Confidence 99999999999999863
No 8
>PLN00097 photosystem I light harvesting complex Lhca2/4, chlorophyll a/b binding; Provisional
Probab=99.79 E-value=3e-19 Score=155.28 Aligned_cols=109 Identities=16% Similarity=0.234 Sum_probs=68.8
Q ss_pred ccccCCCC--------CchHHHHHHHHHHHHHHHHHHHHHhCCchh---hhhhhhh----------hHHH-HHHHHHHHH
Q 029497 84 SEVFAFSG--------PAPERINGRLAMIGFVAALGVEISKGQDVF---AQLSDGG----------VAWF-LGTSVLLTV 141 (192)
Q Consensus 84 ~D~lgFsg--------~~aEliNGR~AMLGfvg~l~~E~~tg~~~~---~Q~~~~g----------~~~f-l~~~~ll~~ 141 (192)
|||+||+. .++|++||||||||++|+++.|++++.++. .++..+. +.++ ++.++.++.
T Consensus 67 fDPlGl~~~~~~~~~~r~aEl~hGR~AMLa~~G~lv~e~l~~~g~~~~p~W~~Ag~~~~~~~~~~~l~~i~~~lmg~~E~ 146 (244)
T PLN00097 67 FDPLNLGADPEMLKWFVQAELMHARWAMLGLAGCVAPELLTKIGMADLPNWIDAAKWDGYWAGAGPLFFIQMAMFNWAEI 146 (244)
T ss_pred CCccccCcCHHHHHHHHHHHHhcchHHHHHHhhhhHHHHhcCCCcccCCccccCCcchhccccchhHHHHHHHHHHHHHH
Confidence 89999975 379999999999999999999999876542 1222111 1111 111223333
Q ss_pred Hhhhcccc-C---C--------CCCCCC----CCCCC--------------hHHHHHHHHHHHHHHHHHHHHHHHhCCcC
Q 029497 142 ASLVPLFK-G---V--------SVESKS----DGFMT--------------SDAELWNGRFAMLGLVALAFTEFVKGGTL 191 (192)
Q Consensus 142 asl~P~~~-g---~--------~~e~~~----~G~ft--------------~~AEl~NGRlAMlG~~gl~~~E~vTG~~l 191 (192)
..+.-.++ | . ..++.+ .|.|+ +.+|+|||||||++++|+++|+.+||+++
T Consensus 147 ~r~~~~~~pg~~~~~p~~~~~~~~~~~d~gYPgg~FDPlgl~~d~~~~~~lk~kEiknGRLAM~A~~G~~~q~~vTGkGP 226 (244)
T PLN00097 147 RRWQDMKAPGSMNEDPLFGANKGDTNTDVGYPKGLFDKFGWAKDEKKAAELKLKEIANGRLAMLAFLGCCAQAIQTGTGP 226 (244)
T ss_pred HHhhcccCCCccccccccccccCCcccccCCCCCCCCccccCCCHHHHHHHHHHHHHhhHHHHHHHHHHhhhhhccCCCH
Confidence 22211111 1 0 011111 11222 46999999999999999999999999986
Q ss_pred C
Q 029497 192 V 192 (192)
Q Consensus 192 ~ 192 (192)
+
T Consensus 227 l 227 (244)
T PLN00097 227 V 227 (244)
T ss_pred H
Confidence 4
No 9
>PLN00099 light-harvesting complex IChlorophyll A-B binding protein Lhca1; Provisional
Probab=99.79 E-value=6.8e-19 Score=152.96 Aligned_cols=109 Identities=17% Similarity=0.117 Sum_probs=65.3
Q ss_pred cccccCCCC--------CchHHHHHHHHHHHHHHHHHHHHHhCCchhhh-----hhhh-------hhH----HHHHHHHH
Q 029497 83 FSEVFAFSG--------PAPERINGRLAMIGFVAALGVEISKGQDVFAQ-----LSDG-------GVA----WFLGTSVL 138 (192)
Q Consensus 83 f~D~lgFsg--------~~aEliNGR~AMLGfvg~l~~E~~tg~~~~~Q-----~~~~-------g~~----~fl~~~~l 138 (192)
-|||++++. +++|++||||||||++|++++|+++...+++- +..+ .+. ..+..+.+
T Consensus 66 GfDPlgls~~~~~~~~~r~~ELkHGR~AMLAv~G~i~~E~l~~~~w~~a~~~~~~~~g~~~~~g~~~~~~~l~~~~~iqv 145 (243)
T PLN00099 66 GFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEALGLGNWVKAQEWAAIPGGQATYLGNPVPWGTLPTILAIEF 145 (243)
T ss_pred CCCccccccCHHHHHHHHHHhccCCcHHHHHHhhHHHHHHhccCCcccccchhccCcchhhhccCccchhhHHHHHHHHH
Confidence 499999975 26899999999999999999999754222210 0000 010 01111222
Q ss_pred HHHHhhhcccc----C--CCCCCCC-CCC--CC---------hHHHHHHHHHHHHHHHHHHHHH-HHhCCcCC
Q 029497 139 LTVASLVPLFK----G--VSVESKS-DGF--MT---------SDAELWNGRFAMLGLVALAFTE-FVKGGTLV 192 (192)
Q Consensus 139 l~~asl~P~~~----g--~~~e~~~-~G~--ft---------~~AEl~NGRlAMlG~~gl~~~E-~vTG~~l~ 192 (192)
+ +..+++.++ + ....+++ +.+ |. +.+|||||||||+||+|+++|| .+||++++
T Consensus 146 l-~ig~~E~~r~~~~~~~~~~yPGd~FDPlGl~kd~~~~~~~k~kELkNGRLAMiA~lGf~vQ~~~~~G~gPl 217 (243)
T PLN00099 146 L-AIAFVEHQRSMEKDPEKKKYPGGAFDPLGYSKDPKKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPL 217 (243)
T ss_pred H-HHHHHHHHhhccCCCCCCcCCCCcCCcccccCCHHHHHHHHHHHHHhhHHHHHHHHHHHHhhhhcCCCChH
Confidence 2 122222211 1 0111221 111 21 4689999999999999999999 56898864
No 10
>PLN00147 light-harvesting complex I chlorophyll-a/b binding protein Lhca5; Provisional
Probab=99.79 E-value=9.8e-19 Score=152.65 Aligned_cols=109 Identities=15% Similarity=0.169 Sum_probs=68.2
Q ss_pred ccccCCCC--------CchHHHHHHHHHHHHHHHHHHHHHhCCch-----hhhhhh-------hh-hHH-HHHHHHHHHH
Q 029497 84 SEVFAFSG--------PAPERINGRLAMIGFVAALGVEISKGQDV-----FAQLSD-------GG-VAW-FLGTSVLLTV 141 (192)
Q Consensus 84 ~D~lgFsg--------~~aEliNGR~AMLGfvg~l~~E~~tg~~~-----~~Q~~~-------~g-~~~-fl~~~~ll~~ 141 (192)
||||||+. +++|++|||+||||++|.+++|+++..++ |..... .+ ..+ -++++++++.
T Consensus 68 FDPlgl~~d~~~~~~~r~aElkhGR~AMlA~~G~l~~e~~~~~g~~~~p~w~~ag~~~~~~~~~~~~~~~q~~~mG~~E~ 147 (252)
T PLN00147 68 FDPLGLGEDPESLKWYVQAELVHSRFAMAGVAGILFTDLLRVTGIRNLPVWYEAGAVKFEFASTRTLFVVQLLLMGFAET 147 (252)
T ss_pred CCcccccCCHHHHHHHHHHHhhccHHHHHHHhhhhHHHHhccCCCcCCcchhhcccchhccccchHHHHHHHHHHHHHHH
Confidence 89999975 37899999999999999999999876543 211110 00 111 1223344443
Q ss_pred Hhhhcc-----------ccCC-----CC---CCCCCC--C--CC---------hHHHHHHHHHHHHHHHHHHHHHHHhCC
Q 029497 142 ASLVPL-----------FKGV-----SV---ESKSDG--F--MT---------SDAELWNGRFAMLGLVALAFTEFVKGG 189 (192)
Q Consensus 142 asl~P~-----------~~g~-----~~---e~~~~G--~--ft---------~~AEl~NGRlAMlG~~gl~~~E~vTG~ 189 (192)
....-+ |.|. .. .+++.+ + +. +.+|++||||||+|++|+++||.+||+
T Consensus 148 ~R~~~~~~pg~~~~~g~~~g~~~~~~~~~~~yPGd~~FDPlGl~~d~~~~~~~k~kEikNGRLAMlA~~G~~~q~~vtg~ 227 (252)
T PLN00147 148 KRYMDFVSPGSQAKEGSFFGLEAALEGLEPGYPGGPLFNPLGLAKDIENAHDWKLKEIKNGRLAMVAMLGFFVQASVTHT 227 (252)
T ss_pred HhhccccCCCccccccccccccccccccCCCCcccccCCccccCCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCC
Confidence 221100 0000 00 112111 1 11 468999999999999999999999999
Q ss_pred cCC
Q 029497 190 TLV 192 (192)
Q Consensus 190 ~l~ 192 (192)
+++
T Consensus 228 Gp~ 230 (252)
T PLN00147 228 GPI 230 (252)
T ss_pred ChH
Confidence 863
No 11
>PLN00025 photosystem II light harvesting chlorophyll a/b binding protein; Provisional
Probab=99.76 E-value=2.1e-18 Score=151.30 Aligned_cols=108 Identities=21% Similarity=0.312 Sum_probs=67.7
Q ss_pred ccccCCCC--------CchHHHHHHHHHHHHHHHHHHHHHhCCch------hh----hh-hhhhh------------H-H
Q 029497 84 SEVFAFSG--------PAPERINGRLAMIGFVAALGVEISKGQDV------FA----QL-SDGGV------------A-W 131 (192)
Q Consensus 84 ~D~lgFsg--------~~aEliNGR~AMLGfvg~l~~E~~tg~~~------~~----Q~-~~~g~------------~-~ 131 (192)
|||||++. +++|++||||||||++|+++.|++++.++ |. |+ ..+++ . +
T Consensus 76 fDPlGls~dp~~~~~~re~El~hGR~AMLa~~G~i~~e~l~~~g~~~~~~~W~~ag~~~~~~gg~~y~~~p~~~~~~~~~ 155 (262)
T PLN00025 76 WDTAGLSADPETFARNRELEVIHARWAMLGALGCVTPELLAKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLVHAQSIL 155 (262)
T ss_pred CCccccccCHHHHHHHHHHHHhccHHHHHHHhhhhhHHHhhcCCcCcCcccccccccccccccccccccCcccchhhhHH
Confidence 99999975 27899999999999999999999875543 11 11 00111 0 0
Q ss_pred HHHHHHHHHHHhhhcccc--C----C--C-CCCCC-CCC--C---------ChHHHHHHHHHHHHHHHHHHHHHHHhCCc
Q 029497 132 FLGTSVLLTVASLVPLFK--G----V--S-VESKS-DGF--M---------TSDAELWNGRFAMLGLVALAFTEFVKGGT 190 (192)
Q Consensus 132 fl~~~~ll~~asl~P~~~--g----~--~-~e~~~-~G~--f---------t~~AEl~NGRlAMlG~~gl~~~E~vTG~~ 190 (192)
.++.+.++ ++.+++.++ + + + ..+++ +.+ + .+.+|++||||||++++|+++|+++||++
T Consensus 156 a~~~~qv~-lmg~~E~~r~~~~~~~~~~d~~yPG~~FDPlGl~~d~~~~~~~k~kEikNGRLAMlA~~G~~~q~~vTG~G 234 (262)
T PLN00025 156 AIWACQVV-LMGAVEGYRVNGGPLGEGLDPLYPGGSFDPLGLADDPDTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKG 234 (262)
T ss_pred HHHHHHHH-HHHHHHHhcccCCcccccccCcCCcccCCccccCCCHHHHHHHHHHHHhhhhHHHHHHHHHhhhhhhcCCC
Confidence 01111111 223333332 1 1 1 11211 111 1 15789999999999999999999999998
Q ss_pred CC
Q 029497 191 LV 192 (192)
Q Consensus 191 l~ 192 (192)
++
T Consensus 235 Pl 236 (262)
T PLN00025 235 PL 236 (262)
T ss_pred hH
Confidence 64
No 12
>PLN00170 photosystem II light-harvesting-Chl-binding protein Lhcb6 (CP24); Provisional
Probab=99.75 E-value=1.2e-17 Score=146.09 Aligned_cols=40 Identities=23% Similarity=0.205 Sum_probs=34.6
Q ss_pred cccccCCCC--------CchHHHHHHHHHHHHHHHHHHHHHhCCchhh
Q 029497 83 FSEVFAFSG--------PAPERINGRLAMIGFVAALGVEISKGQDVFA 122 (192)
Q Consensus 83 f~D~lgFsg--------~~aEliNGR~AMLGfvg~l~~E~~tg~~~~~ 122 (192)
-|||+|++. .+.|++||||||||++|+++.|+++|..+++
T Consensus 79 GFDPlgl~~d~e~~~~~r~~El~hGR~AMLa~~G~~v~e~l~g~~w~~ 126 (255)
T PLN00170 79 GFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQAWSGIPWFE 126 (255)
T ss_pred CcCccccCCCHHHHHHHHHHHhhccHHHHHHHHhhhhHHHccCCChhh
Confidence 399999974 2689999999999999999999998876554
No 13
>PLN00171 photosystem light-harvesting complex -chlorophyll a/b binding protein Lhcb7; Provisional
Probab=99.74 E-value=5.4e-18 Score=152.22 Aligned_cols=109 Identities=15% Similarity=0.075 Sum_probs=66.7
Q ss_pred ccccCCCC--------CchHHHHHHHHHHHHHHHHHHHHHhCCchhh-------hhh-------------hhhh----HH
Q 029497 84 SEVFAFSG--------PAPERINGRLAMIGFVAALGVEISKGQDVFA-------QLS-------------DGGV----AW 131 (192)
Q Consensus 84 ~D~lgFsg--------~~aEliNGR~AMLGfvg~l~~E~~tg~~~~~-------Q~~-------------~~g~----~~ 131 (192)
||||||+. +++|++||||||||++|++++|+++..+... ... ..++ ..
T Consensus 133 FDPLGL~~dp~~l~~~reaELkHGR~AMLA~~G~lv~e~l~~~g~~~~~~p~W~~aG~~~~~g~~~~y~~~p~~~~~~~q 212 (324)
T PLN00171 133 FDIAGLGKDPVAFDKYFNFEILHARWAMLAALGVVIPEVLDLFGAVHFAEPVWWRVGYAKLQGDTLDYLGIPGLHIAGSQ 212 (324)
T ss_pred CCccccccCHHHHHHHHHHHhccchHHHHHHhhHHHHHHhccCCccccCccchhhcccccccccchhhccCCccccchhH
Confidence 89999975 3799999999999999999999976443211 001 0110 01
Q ss_pred HHHHHHHHHHHh--hhccc--cCC-------CCCCCCCC----C-CC--------------hHHHHHHHHHHHHHHHHHH
Q 029497 132 FLGTSVLLTVAS--LVPLF--KGV-------SVESKSDG----F-MT--------------SDAELWNGRFAMLGLVALA 181 (192)
Q Consensus 132 fl~~~~ll~~as--l~P~~--~g~-------~~e~~~~G----~-ft--------------~~AEl~NGRlAMlG~~gl~ 181 (192)
.+.++.++.+.. ..+.. .+. .+.+++.+ . |+ +.+|++||||||+|++|++
T Consensus 213 ~l~~i~~iEillm~g~E~~R~~~~~~~~~~g~~~PGD~gYPGG~~FDPLGl~~d~~~~~~~k~kELkNGRLAM~A~lG~~ 292 (324)
T PLN00171 213 GVIVIAICQALLMVGPEYARYCGIEALEPLGIYLPGDINYPGGALFDPLGLSKDPVAFEDLKVKEIKNGRLAMVAWLGFY 292 (324)
T ss_pred HHHHHHHHHHHHhhhhhheeeccccccCCccccCCCcccCCcccCCCccccCCCHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 122222222221 11211 110 11122211 1 22 3579999999999999999
Q ss_pred HHHHHhCCcCC
Q 029497 182 FTEFVKGGTLV 192 (192)
Q Consensus 182 ~~E~vTG~~l~ 192 (192)
+|+.+||++++
T Consensus 293 vq~~vTG~GPl 303 (324)
T PLN00171 293 IQAAVTGKGPV 303 (324)
T ss_pred HhHhhcCCChH
Confidence 99999999864
No 14
>PLN00187 photosystem II light-harvesting complex II protein Lhcb4; Provisional
Probab=99.74 E-value=4.9e-18 Score=150.52 Aligned_cols=98 Identities=23% Similarity=0.265 Sum_probs=62.0
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHhCCchhhhhhh-----h----h--hH---HHHHHHHHHHHHhhhccccCCCCC----
Q 029497 93 APERINGRLAMIGFVAALGVEISKGQDVFAQLSD-----G----G--VA---WFLGTSVLLTVASLVPLFKGVSVE---- 154 (192)
Q Consensus 93 ~aEliNGR~AMLGfvg~l~~E~~tg~~~~~Q~~~-----~----g--~~---~fl~~~~ll~~asl~P~~~g~~~e---- 154 (192)
++|++||||||||++|++++|+++|..++. .+. + + .. ..++.+.++ ++.+++.+++...+
T Consensus 135 EaELiHGRwAMLAvaG~lvpEll~G~~W~~-aG~~~~~~g~~y~g~~~p~~~~~l~~iqvl-lmG~~E~~R~~~~~~~~~ 212 (286)
T PLN00187 135 ECELIHGRWAMLATLGALSVEALTGVTWQD-AGKVELVDGSSYLGQPLPFSITTLIWIEVL-VIGYIEFQRNAELDPEKR 212 (286)
T ss_pred HHHhhhhHHHHHHhhchhhHHhccCCcccc-cccccccccccccccccchhHHHHHHHHHH-HHHHHHhhhccCCCCCCC
Confidence 679999999999999999999987654321 111 0 0 00 112222222 34444554422111
Q ss_pred --CCCCC--C--C---------ChHHHHHHHHHHHHHHHHHHHHHHHhCCcCC
Q 029497 155 --SKSDG--F--M---------TSDAELWNGRFAMLGLVALAFTEFVKGGTLV 192 (192)
Q Consensus 155 --~~~~G--~--f---------t~~AEl~NGRlAMlG~~gl~~~E~vTG~~l~ 192 (192)
+++.+ + | .+.+|++||||||++++|+++|+.+||++.+
T Consensus 213 ~yPGg~~FDPlGl~~d~e~~~~~k~kEIkNGRLAMlA~lG~~vq~~vtg~GPi 265 (286)
T PLN00187 213 LYPGGKFFDPLGLAADPEKKETLQLAEIKHARLAMVAFLGFAVQAAATGKGPL 265 (286)
T ss_pred CCCccccccccccCCCHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhcCCChH
Confidence 11111 1 1 1468999999999999999999999998763
No 15
>PHA02337 putative high light inducible protein
Probab=99.28 E-value=4.2e-12 Score=80.79 Aligned_cols=31 Identities=39% Similarity=0.583 Sum_probs=29.6
Q ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHhCCcC
Q 029497 161 MTSDAELWNGRFAMLGLVALAFTEFVKGGTL 191 (192)
Q Consensus 161 ft~~AEl~NGRlAMlG~~gl~~~E~vTG~~l 191 (192)
|++.+|+||||+|||||+..+..|+.||+++
T Consensus 1 ft~~aE~~NGRlAMiGfv~~~~~e~~tGq~i 31 (35)
T PHA02337 1 MTPEAEIFNGWLAMIGFVAAVGAYATTGQII 31 (35)
T ss_pred CccHHHHHhhHHHHHHHHHHHHHHHHhCCCC
Confidence 6889999999999999999999999999976
No 16
>PLN00014 light-harvesting-like protein 3; Provisional
Probab=99.01 E-value=3.6e-10 Score=98.14 Aligned_cols=49 Identities=31% Similarity=0.428 Sum_probs=40.6
Q ss_pred CCchHHHHHHHHHHHHHHHHHHHHHhCCchhhhhhhh--hhHHHHHHHHHH
Q 029497 91 GPAPERINGRLAMIGFVAALGVEISKGQDVFAQLSDG--GVAWFLGTSVLL 139 (192)
Q Consensus 91 g~~aEliNGR~AMLGfvg~l~~E~~tg~~~~~Q~~~~--g~~~fl~~~~ll 139 (192)
.+++|++|||+||+||+.++++|+++|+++++|+++. ++.+|+.+++++
T Consensus 159 l~~aE~lNGR~AMiGFvaal~~E~~TG~gll~Qlg~f~~k~llfv~v~gvl 209 (250)
T PLN00014 159 LPEAELLNGRAAMVGFFMAYLVDSLTGVGLVDQMGNFFCKTLLFVTVAGVL 209 (250)
T ss_pred CchhHhhhhHHHHHHHHHHHHHHHHcCCcHHHHHhhhhhHHHHHHHHHHhe
Confidence 3589999999999999999999999999999999874 455555554443
No 17
>PHA02337 putative high light inducible protein
Probab=98.98 E-value=5.1e-10 Score=71.26 Aligned_cols=30 Identities=53% Similarity=0.742 Sum_probs=27.7
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHhCCchh
Q 029497 92 PAPERINGRLAMIGFVAALGVEISKGQDVF 121 (192)
Q Consensus 92 ~~aEliNGR~AMLGfvg~l~~E~~tg~~~~ 121 (192)
+.+|++|||+||+||+.++..|+.||+++.
T Consensus 3 ~~aE~~NGRlAMiGfv~~~~~e~~tGq~ip 32 (35)
T PHA02337 3 PEAEIFNGWLAMIGFVAAVGAYATTGQIIP 32 (35)
T ss_pred cHHHHHhhHHHHHHHHHHHHHHHHhCCCCC
Confidence 479999999999999999999999999763
No 18
>PLN00101 Photosystem I light-harvesting complex type 4 protein; Provisional
Probab=98.53 E-value=4.1e-08 Score=86.14 Aligned_cols=47 Identities=28% Similarity=0.409 Sum_probs=41.0
Q ss_pred CCCcccccCCCC----CchHHHHHHHHHHHHHHHHHHHHHhCCchhhhhhh
Q 029497 80 STGFSEVFAFSG----PAPERINGRLAMIGFVAALGVEISKGQDVFAQLSD 126 (192)
Q Consensus 80 ~~~f~D~lgFsg----~~aEliNGR~AMLGfvg~l~~E~~tg~~~~~Q~~~ 126 (192)
..|.||||||+. ...|++|||+||++++|.+++++.||++.++++..
T Consensus 185 PGG~FDPLgl~~~~~~k~kEIKNGRLAM~A~lGf~~Q~~vTG~gPi~nL~~ 235 (250)
T PLN00101 185 PGGIFNPLNFAPTEEAKEKELANGRLAMLAFLGFVVQHNVTGKGPFENLLQ 235 (250)
T ss_pred CCCccCccCCCccHHHHHHHHhhcchHHHHHhhHhheehccCCChHHHHHH
Confidence 456799999974 25899999999999999999999999998887754
No 19
>PLN00147 light-harvesting complex I chlorophyll-a/b binding protein Lhca5; Provisional
Probab=98.52 E-value=1e-07 Score=83.75 Aligned_cols=49 Identities=18% Similarity=0.163 Sum_probs=41.0
Q ss_pred CCCCc-ccccCCCCC--------chHHHHHHHHHHHHHHHHHHHHHhCCchhhhhhhh
Q 029497 79 MSTGF-SEVFAFSGP--------APERINGRLAMIGFVAALGVEISKGQDVFAQLSDG 127 (192)
Q Consensus 79 ~~~~f-~D~lgFsg~--------~aEliNGR~AMLGfvg~l~~E~~tg~~~~~Q~~~~ 127 (192)
...++ |||||+... ..|++|||+||+|++|.+++|+.+|++.++++...
T Consensus 179 yPGd~~FDPlGl~~d~~~~~~~k~kEikNGRLAMlA~~G~~~q~~vtg~Gp~~nL~~h 236 (252)
T PLN00147 179 YPGGPLFNPLGLAKDIENAHDWKLKEIKNGRLAMVAMLGFFVQASVTHTGPIDNLLTH 236 (252)
T ss_pred CcccccCCccccCCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCChHHHHHHH
Confidence 33444 999999752 57999999999999999999999999988877553
No 20
>PLN00097 photosystem I light harvesting complex Lhca2/4, chlorophyll a/b binding; Provisional
Probab=98.44 E-value=1.7e-07 Score=82.00 Aligned_cols=48 Identities=27% Similarity=0.445 Sum_probs=41.8
Q ss_pred CCCCcccccCCCCC--------chHHHHHHHHHHHHHHHHHHHHHhCCchhhhhhh
Q 029497 79 MSTGFSEVFAFSGP--------APERINGRLAMIGFVAALGVEISKGQDVFAQLSD 126 (192)
Q Consensus 79 ~~~~f~D~lgFsg~--------~aEliNGR~AMLGfvg~l~~E~~tg~~~~~Q~~~ 126 (192)
...|.||||||.+. ..|++|||+||++++|.+++++.||++.++++..
T Consensus 177 YPgg~FDPlgl~~d~~~~~~lk~kEiknGRLAM~A~~G~~~q~~vTGkGPl~nL~~ 232 (244)
T PLN00097 177 YPKGLFDKFGWAKDEKKAAELKLKEIANGRLAMLAFLGCCAQAIQTGTGPVDNLFS 232 (244)
T ss_pred CCCCCCCccccCCCHHHHHHHHHHHHHhhHHHHHHHHHHhhhhhccCCCHHHHHHH
Confidence 45578999999752 5899999999999999999999999998887754
No 21
>PLN00025 photosystem II light harvesting chlorophyll a/b binding protein; Provisional
Probab=98.43 E-value=2.1e-07 Score=82.23 Aligned_cols=48 Identities=25% Similarity=0.356 Sum_probs=41.7
Q ss_pred CCCCcccccCCCC--------CchHHHHHHHHHHHHHHHHHHHHHhCCchhhhhhh
Q 029497 79 MSTGFSEVFAFSG--------PAPERINGRLAMIGFVAALGVEISKGQDVFAQLSD 126 (192)
Q Consensus 79 ~~~~f~D~lgFsg--------~~aEliNGR~AMLGfvg~l~~E~~tg~~~~~Q~~~ 126 (192)
...++|||||+.. ...|++|||+||++++|.+++|+.||++.++++..
T Consensus 186 yPG~~FDPlGl~~d~~~~~~~k~kEikNGRLAMlA~~G~~~q~~vTG~GPlenL~~ 241 (262)
T PLN00025 186 YPGGSFDPLGLADDPDTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLAD 241 (262)
T ss_pred CCcccCCccccCCCHHHHHHHHHHHHhhhhHHHHHHHHHhhhhhhcCCChHHHHHH
Confidence 4557799999975 26899999999999999999999999998887754
No 22
>PLN00100 light-harvesting complex chlorophyll-a/b protein of photosystem I (Lhca); Provisional
Probab=98.40 E-value=1.4e-07 Score=82.62 Aligned_cols=43 Identities=23% Similarity=0.334 Sum_probs=38.6
Q ss_pred ccccCCCC---CchHHHHHHHHHHHHHHHHHHHHHhCCchhhhhhh
Q 029497 84 SEVFAFSG---PAPERINGRLAMIGFVAALGVEISKGQDVFAQLSD 126 (192)
Q Consensus 84 ~D~lgFsg---~~aEliNGR~AMLGfvg~l~~E~~tg~~~~~Q~~~ 126 (192)
||||||+. ...|++|||+||+||+|.+++++.+|++.++++..
T Consensus 150 FDPLGl~~~~~K~KEIkNGRLAMlA~lG~~~Q~~vTG~gPlenL~~ 195 (246)
T PLN00100 150 FDPTGMDSPEMKVKEVKNGRLAMLAFLGMVSQYAVTGKSPLEGLKA 195 (246)
T ss_pred CCcccccHHHHHHHHHhhhhHHHHHHHHHhhhhhhcCCChHHHHHH
Confidence 99999974 36899999999999999999999999998877654
No 23
>PLN00099 light-harvesting complex IChlorophyll A-B binding protein Lhca1; Provisional
Probab=98.37 E-value=4.7e-07 Score=79.24 Aligned_cols=47 Identities=26% Similarity=0.351 Sum_probs=39.2
Q ss_pred CCCcccccCCCCC--------chHHHHHHHHHHHHHHHHHHH-HHhCCchhhhhhh
Q 029497 80 STGFSEVFAFSGP--------APERINGRLAMIGFVAALGVE-ISKGQDVFAQLSD 126 (192)
Q Consensus 80 ~~~f~D~lgFsg~--------~aEliNGR~AMLGfvg~l~~E-~~tg~~~~~Q~~~ 126 (192)
..+.||||||+.. ..|++|||+||+|++|.+++| ..+|++.++++..
T Consensus 167 PGd~FDPlGl~kd~~~~~~~k~kELkNGRLAMiA~lGf~vQ~~~~~G~gPl~nL~~ 222 (243)
T PLN00099 167 PGGAFDPLGYSKDPKKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLAT 222 (243)
T ss_pred CCCcCCcccccCCHHHHHHHHHHHHHhhHHHHHHHHHHHHhhhhcCCCChHHHHHH
Confidence 3457999999742 579999999999999999999 4689998887754
No 24
>PLN00014 light-harvesting-like protein 3; Provisional
Probab=98.35 E-value=2.3e-07 Score=80.82 Aligned_cols=30 Identities=40% Similarity=0.575 Sum_probs=28.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhCCcCC
Q 029497 163 SDAELWNGRFAMLGLVALAFTEFVKGGTLV 192 (192)
Q Consensus 163 ~~AEl~NGRlAMlG~~gl~~~E~vTG~~l~ 192 (192)
+.+|++|||+|||||+..++.|++||.+++
T Consensus 160 ~~aE~lNGR~AMiGFvaal~~E~~TG~gll 189 (250)
T PLN00014 160 PEAELLNGRAAMVGFFMAYLVDSLTGVGLV 189 (250)
T ss_pred chhHhhhhHHHHHHHHHHHHHHHHcCCcHH
Confidence 579999999999999999999999999874
No 25
>PLN00098 light-harvesting complex I chlorophyll a/b-binding protein (Lhac); Provisional
Probab=98.33 E-value=4.2e-07 Score=80.50 Aligned_cols=47 Identities=26% Similarity=0.352 Sum_probs=40.2
Q ss_pred CCCc-ccccCCCC---------CchHHHHHHHHHHHHHHHHHHHHHhCCchhhhhhh
Q 029497 80 STGF-SEVFAFSG---------PAPERINGRLAMIGFVAALGVEISKGQDVFAQLSD 126 (192)
Q Consensus 80 ~~~f-~D~lgFsg---------~~aEliNGR~AMLGfvg~l~~E~~tg~~~~~Q~~~ 126 (192)
..++ |||+|+.. ...|++|||+||++++|.+++++.||++.++++..
T Consensus 194 PGg~~FDPlgl~~~d~~~~~~~k~kEikNGRLAM~A~~G~~~q~~vTG~gPl~nL~~ 250 (267)
T PLN00098 194 PGGLWFDPMMWGRGSPEPVMVLRTKEIKNGRLAMLAFVGFCFQAVYTGEGPIENLMA 250 (267)
T ss_pred CCCccCCcccCCCCCHHHHHHHHHHHHhhhHHHHHHHHHHHHhhhhcCCChHHHHHH
Confidence 4455 99999953 14899999999999999999999999999888754
No 26
>PLN00048 photosystem I light harvesting chlorophyll a/b binding protein 3; Provisional
Probab=98.31 E-value=4.1e-07 Score=80.39 Aligned_cols=44 Identities=30% Similarity=0.416 Sum_probs=38.9
Q ss_pred cccccCCCCC--------chHHHHHHHHHHHHHHHHHHHHHhCCchhhhhhh
Q 029497 83 FSEVFAFSGP--------APERINGRLAMIGFVAALGVEISKGQDVFAQLSD 126 (192)
Q Consensus 83 f~D~lgFsg~--------~aEliNGR~AMLGfvg~l~~E~~tg~~~~~Q~~~ 126 (192)
+|||+|+... ..|++|||+||++++|.+++|+.+|++.++++..
T Consensus 194 ~fDPlGl~~~~e~~~~~k~~EiknGRLAM~A~~G~~~q~~~tg~gp~~~L~~ 245 (262)
T PLN00048 194 FFNPLGFGKDEKSMKELKLKEVKNGRLAMLAILGYFIQALVTGVGPFQNLLD 245 (262)
T ss_pred ccCccccccchHHHHHHHHHHHhhhHHHHHHhhhHhhhhhhcCCCHHHHHHH
Confidence 5999999752 5899999999999999999999999998877654
No 27
>PLN00187 photosystem II light-harvesting complex II protein Lhcb4; Provisional
Probab=98.29 E-value=6.1e-07 Score=80.19 Aligned_cols=44 Identities=18% Similarity=0.305 Sum_probs=38.7
Q ss_pred cccccCCCCC--------chHHHHHHHHHHHHHHHHHHHHHhCCchhhhhhh
Q 029497 83 FSEVFAFSGP--------APERINGRLAMIGFVAALGVEISKGQDVFAQLSD 126 (192)
Q Consensus 83 f~D~lgFsg~--------~aEliNGR~AMLGfvg~l~~E~~tg~~~~~Q~~~ 126 (192)
+||||||+.. ..|++|||+||+|++|.+++++.+|.+.++++..
T Consensus 219 ~FDPlGl~~d~e~~~~~k~kEIkNGRLAMlA~lG~~vq~~vtg~GPi~nL~~ 270 (286)
T PLN00187 219 FFDPLGLAADPEKKETLQLAEIKHARLAMVAFLGFAVQAAATGKGPLNNWAT 270 (286)
T ss_pred cccccccCCCHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhcCCChHHHHHH
Confidence 5999999752 5799999999999999999999999988777654
No 28
>PLN00084 photosystem II subunit S (PsbS); Provisional
Probab=98.28 E-value=4.6e-07 Score=76.38 Aligned_cols=31 Identities=35% Similarity=0.459 Sum_probs=28.1
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHh-CCcCC
Q 029497 162 TSDAELWNGRFAMLGLVALAFTEFVK-GGTLV 192 (192)
Q Consensus 162 t~~AEl~NGRlAMlG~~gl~~~E~vT-G~~l~ 192 (192)
++..|+||||+||+||+..++.|++| |+|++
T Consensus 135 qK~nE~~NGRLAMLGF~~alitE~lTgGqGiL 166 (214)
T PLN00084 135 QKPYELFNGRLAMLGFAFAIAGDAVTGGMGPL 166 (214)
T ss_pred ccchhhhhhHHHHHHHHHHHHHHHHhCCcchH
Confidence 35789999999999999999999999 88864
No 29
>PLN00089 fucoxanthin-chlorophyll a/c binding protein; Provisional
Probab=98.26 E-value=8.3e-07 Score=76.05 Aligned_cols=38 Identities=24% Similarity=0.225 Sum_probs=33.4
Q ss_pred ccccCCCCC---------chHHHHHHHHHHHHHHHHHHHHHhCCchh
Q 029497 84 SEVFAFSGP---------APERINGRLAMIGFVAALGVEISKGQDVF 121 (192)
Q Consensus 84 ~D~lgFsg~---------~aEliNGR~AMLGfvg~l~~E~~tg~~~~ 121 (192)
|||+|+.+. ..|++|||+||+|+.|.++.|+++|+++.
T Consensus 161 fdplgl~~~d~~~~~~~~~~El~NGRlAM~a~~g~~~~~~~tg~g~~ 207 (209)
T PLN00089 161 FDLLALYPKDAAKMEKKKDKELKNGRLAMVAIGGIATGSAITGHGFP 207 (209)
T ss_pred ccccccCCCCHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHcCCCCC
Confidence 899999531 46999999999999999999999998864
No 30
>PLN00084 photosystem II subunit S (PsbS); Provisional
Probab=98.22 E-value=1.8e-06 Score=72.82 Aligned_cols=36 Identities=33% Similarity=0.493 Sum_probs=33.3
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHh-CCchhhhhhhh
Q 029497 92 PAPERINGRLAMIGFVAALGVEISK-GQDVFAQLSDG 127 (192)
Q Consensus 92 ~~aEliNGR~AMLGfvg~l~~E~~t-g~~~~~Q~~~~ 127 (192)
..-|++|||+||+||+.+++.|++| |+++++|+...
T Consensus 136 K~nE~~NGRLAMLGF~~alitE~lTgGqGiL~Ql~~E 172 (214)
T PLN00084 136 KPYELFNGRLAMLGFAFAIAGDAVTGGMGPLEQFNGE 172 (214)
T ss_pred cchhhhhhHHHHHHHHHHHHHHHHhCCcchHHHhccc
Confidence 3689999999999999999999999 99999998764
No 31
>PLN00171 photosystem light-harvesting complex -chlorophyll a/b binding protein Lhcb7; Provisional
Probab=98.21 E-value=1.3e-06 Score=79.29 Aligned_cols=44 Identities=25% Similarity=0.332 Sum_probs=38.4
Q ss_pred cccccCCCCC--------chHHHHHHHHHHHHHHHHHHHHHhCCchhhhhhh
Q 029497 83 FSEVFAFSGP--------APERINGRLAMIGFVAALGVEISKGQDVFAQLSD 126 (192)
Q Consensus 83 f~D~lgFsg~--------~aEliNGR~AMLGfvg~l~~E~~tg~~~~~Q~~~ 126 (192)
.|||+||+.. ..|++|||+||+|++|.+++|+.||++.++++..
T Consensus 257 ~FDPLGl~~d~~~~~~~k~kELkNGRLAM~A~lG~~vq~~vTG~GPlenL~~ 308 (324)
T PLN00171 257 LFDPLGLSKDPVAFEDLKVKEIKNGRLAMVAWLGFYIQAAVTGKGPVQNLVD 308 (324)
T ss_pred CCCccccCCCHHHHHHHHHHHHhhhHHHHHHHHHHHHhHhhcCCChHHHHHH
Confidence 3999999742 4699999999999999999999999998877654
No 32
>PF00504 Chloroa_b-bind: Chlorophyll A-B binding protein; InterPro: IPR022796 The light-harvesting complex (LHC) consists of chlorophylls A and B and the chlorophyll A-B binding protein. LHC functions as a light receptor that captures and delivers excitation energy to photosystems I and II with which it is closely associated. Under changing light conditions, the reversible phosphorylation of light harvesting chlorophyll a/b binding proteins (LHCII) represents a system for balancing the excitation energy between the two photosystems []. The N terminus of the chlorophyll A-B binding protein extends into the stroma where it is involved with adhesion of granal membranes and photo-regulated by reversible phosphorylation of its threonine residues []. Both these processes are believed to mediate the distribution of excitation energy between photosystems I and II. This family also includes the photosystem II protein PsbS, which plays a role in energy-dependent quenching that increases thermal dissipation of excess absorbed light energy in the photosystem [].; PDB: 2O01_2 2WSF_2 2WSC_2 3LW5_2 2WSE_2 1RWT_D 2BHW_C 1VCR_A.
Probab=98.18 E-value=7.4e-07 Score=71.50 Aligned_cols=30 Identities=37% Similarity=0.369 Sum_probs=27.2
Q ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHhCCc
Q 029497 161 MTSDAELWNGRFAMLGLVALAFTEFVKGGT 190 (192)
Q Consensus 161 ft~~AEl~NGRlAMlG~~gl~~~E~vTG~~ 190 (192)
|.+.+|++|||+||+|++|.+++|+.++.+
T Consensus 28 ~~R~aEl~hGR~AMLa~~g~~v~e~~~~~~ 57 (156)
T PF00504_consen 28 WYREAELKHGRVAMLAFVGALVQEAGTGFP 57 (156)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCHCHSTTT
T ss_pred HHHHhHHHhhhhhhhhhHHHHHHHHhccCC
Confidence 568999999999999999999999988753
No 33
>PLN00170 photosystem II light-harvesting-Chl-binding protein Lhcb6 (CP24); Provisional
Probab=98.07 E-value=1.7e-06 Score=76.25 Aligned_cols=41 Identities=22% Similarity=0.353 Sum_probs=34.5
Q ss_pred cccccCCCC-----------------CchHHHHHHHHHHHHHHHHHHHHHhCCchhhhh
Q 029497 83 FSEVFAFSG-----------------PAPERINGRLAMIGFVAALGVEISKGQDVFAQL 124 (192)
Q Consensus 83 f~D~lgFsg-----------------~~aEliNGR~AMLGfvg~l~~E~~tg~~~~~Q~ 124 (192)
+||||||.+ +..|++|||+||++++|.+++- .+|++-++++
T Consensus 196 ~FDPLGl~~~~~~~~~~~d~~~~~~lk~kEIKnGRLAMlA~lGf~~Qa-~~g~~p~~~l 253 (255)
T PLN00170 196 FFDPLGLAGTVKDGVYIPDFEKLERLKLAEIKHARLAMVAMLIFYFEA-GQGKTPLGAL 253 (255)
T ss_pred ccCccccccccccccccCCHHHHHHHHHHHHhhhHHHHHHHHhHheee-ccCCCchhhh
Confidence 799999974 2689999999999999988766 7888876654
No 34
>PLN00120 fucoxanthin-chlorophyll a-c binding protein; Provisional
Probab=97.91 E-value=1.4e-05 Score=68.16 Aligned_cols=26 Identities=31% Similarity=0.234 Sum_probs=24.0
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHhCC
Q 029497 93 APERINGRLAMIGFVAALGVEISKGQ 118 (192)
Q Consensus 93 ~aEliNGR~AMLGfvg~l~~E~~tg~ 118 (192)
..|++|||+||+|+.|.++.|.++|.
T Consensus 170 ~~EL~NGRLAMiai~G~~~qe~l~g~ 195 (202)
T PLN00120 170 AIELNQGRAAQMGILALMVHEQLGVE 195 (202)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHccCC
Confidence 57999999999999999999998874
No 35
>PLN02449 ferrochelatase
Probab=72.71 E-value=3 Score=40.20 Aligned_cols=21 Identities=29% Similarity=0.252 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHHHhCCcCC
Q 029497 172 FAMLGLVALAFTEFVKGGTLV 192 (192)
Q Consensus 172 lAMlG~~gl~~~E~vTG~~l~ 192 (192)
+||+||+.+++.|+++|.+++
T Consensus 463 ~~~~~~~~~~~~~~~~~~~~~ 483 (485)
T PLN02449 463 AAMLAVLLLLVLEVTSGFGNL 483 (485)
T ss_pred hHHHHHHHHHHHHHHcCCCcC
Confidence 999999999999999999874
No 36
>PLN02449 ferrochelatase
Probab=60.84 E-value=6.7 Score=37.92 Aligned_cols=22 Identities=23% Similarity=0.338 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHHHHhCCchhh
Q 029497 101 LAMIGFVAALGVEISKGQDVFA 122 (192)
Q Consensus 101 ~AMLGfvg~l~~E~~tg~~~~~ 122 (192)
+||+||+..++.|+.+|.+.++
T Consensus 463 ~~~~~~~~~~~~~~~~~~~~~~ 484 (485)
T PLN02449 463 AAMLAVLLLLVLEVTSGFGNLH 484 (485)
T ss_pred hHHHHHHHHHHHHHHcCCCcCC
Confidence 9999999999999999998764
No 37
>COG3087 FtsN Cell division protein [Cell division and chromosome partitioning]
Probab=53.80 E-value=14 Score=33.22 Aligned_cols=19 Identities=26% Similarity=0.552 Sum_probs=16.4
Q ss_pred chHHHHHHHHHHHHHHHHH
Q 029497 93 APERINGRLAMIGFVAALG 111 (192)
Q Consensus 93 ~aEliNGR~AMLGfvg~l~ 111 (192)
.+|..-+|+||+||-.=|.
T Consensus 203 qAE~~rA~LAmlG~sskI~ 221 (264)
T COG3087 203 QAESVRAQLAMLGISSKIT 221 (264)
T ss_pred HHHHHHHHHHhccccceeE
Confidence 7999999999999877553
No 38
>PF01524 Gemini_V1: Geminivirus V1 protein; InterPro: IPR002511 Disruption of the V1 gene in Tomato yellow leaf curl virus (TYLCV) stopped its ability to systemically infect Solanum lycopersicum (Tomato) (Lycopersicon esculentum) plants, suggesting that the V1 gene product is required for successful infection of the host [].; GO: 0019048 virus-host interaction, 0060967 negative regulation of gene silencing by RNA, 0030430 host cell cytoplasm
Probab=34.90 E-value=19 Score=26.85 Aligned_cols=23 Identities=17% Similarity=0.245 Sum_probs=18.2
Q ss_pred ccccCCCCCchHHHHHHHHHHHHHH
Q 029497 84 SEVFAFSGPAPERINGRLAMIGFVA 108 (192)
Q Consensus 84 ~D~lgFsg~~aEliNGR~AMLGfvg 108 (192)
|||| .++.||.+||=-|||++=-
T Consensus 2 WDPL--lnefP~tvHGfRCMLAiKY 24 (78)
T PF01524_consen 2 WDPL--LNEFPETVHGFRCMLAIKY 24 (78)
T ss_pred Cccc--cccCCccccchhHHHHHHH
Confidence 7887 3457999999999996643
No 39
>KOG2675 consensus Adenylate cyclase-associated protein (CAP/Srv2p) [Cytoskeleton; Signal transduction mechanisms]
Probab=26.44 E-value=81 Score=30.62 Aligned_cols=22 Identities=23% Similarity=0.356 Sum_probs=14.9
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHhCCchh
Q 029497 93 APERINGRLAMIGFVAALGVEISKGQDVF 121 (192)
Q Consensus 93 ~aEliNGR~AMLGfvg~l~~E~~tg~~~~ 121 (192)
..+-+.||-| ++.|+=.|.++.
T Consensus 257 ~~~~k~~~~A-------lFaqlNqGe~iT 278 (480)
T KOG2675|consen 257 SDANKGGRGA-------LFAQLNQGEGIT 278 (480)
T ss_pred cccccccHHH-------HHHHHhccchhh
Confidence 4567777755 667777776663
No 40
>PLN03132 NADH dehydrogenase (ubiquinone) flavoprotein 1; Provisional
Probab=24.64 E-value=59 Score=31.41 Aligned_cols=23 Identities=22% Similarity=0.440 Sum_probs=11.7
Q ss_pred CCCCCCCCCCCCCCCCCCCCccc
Q 029497 63 QPTIPKAEPQPPKKPRMSTGFSE 85 (192)
Q Consensus 63 ~~~~~~~~~~~~~~~~~~~~f~D 85 (192)
+..||.|||||||+.+....|+.
T Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~ 34 (461)
T PLN03132 12 TAATPQPPPPPPPPEKTHFGGLK 34 (461)
T ss_pred ccCCCCCcccCCCCcccCCCccc
Confidence 33445555555555554444444
Done!