Query 029497
Match_columns 192
No_of_seqs 166 out of 972
Neff 4.7
Searched_HMMs 29240
Date Mon Mar 25 22:53:11 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029497.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/029497hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2bhw_A Chlorophyll A-B binding 99.8 1.3E-19 4.4E-24 155.0 12.0 112 81-192 43-206 (232)
2 2wsc_2 LHCA2, type II chloroph 99.8 3.3E-20 1.1E-24 161.9 2.5 110 83-192 86-247 (269)
3 3pl9_A Chlorophyll A-B binding 99.8 1.1E-18 3.7E-23 150.5 10.6 98 93-191 94-222 (243)
4 2wsc_3 LHCA3, type II chloroph 99.8 1.1E-20 3.7E-25 165.5 -4.8 110 83-192 78-254 (276)
5 2wsc_4 Chlorophyll A-B binding 99.8 1.1E-19 3.9E-24 157.1 1.5 110 82-192 74-229 (251)
6 2wsc_1 AT3G54890, LHCA1; photo 99.7 5.7E-18 1.9E-22 145.8 0.7 108 83-192 67-218 (241)
7 3pl9_A Chlorophyll A-B binding 98.7 1.3E-08 4.4E-13 87.8 6.1 48 79-126 173-228 (243)
8 2bhw_A Chlorophyll A-B binding 98.7 1.6E-08 5.6E-13 86.3 5.9 47 80-126 157-211 (232)
9 2wsc_3 LHCA3, type II chloroph 98.5 3.2E-08 1.1E-12 86.6 1.1 45 83-127 208-260 (276)
10 2wsc_2 LHCA2, type II chloroph 98.4 3.3E-08 1.1E-12 86.3 0.8 46 80-125 196-251 (269)
11 2wsc_1 AT3G54890, LHCA1; photo 98.4 5.4E-08 1.8E-12 83.7 1.9 48 79-126 167-223 (241)
12 2wsc_4 Chlorophyll A-B binding 98.2 3E-07 1E-11 79.4 2.0 45 81-126 186-234 (251)
13 2wsc_E PSAE, PSI-E A, photosys 35.4 7.9 0.00027 30.5 0.0 21 34-54 30-50 (143)
No 1
>2bhw_A Chlorophyll A-B binding protein AB80; LHC-II, photosynthesis, light-harvesting, membrane protein, chloroplast, chromophore, membrane; HET: LUX NEX XAT CLA CHL LHG DGD; 2.50A {Pisum sativum} PDB: 1vcr_A* 1rwt_A*
Probab=99.81 E-value=1.3e-19 Score=154.97 Aligned_cols=112 Identities=20% Similarity=0.146 Sum_probs=67.1
Q ss_pred CCcccccCCCC--------CchHHHHHHHHHHHHHHHHHHHHHhCCc------hhh----hh-hhh-------h------
Q 029497 81 TGFSEVFAFSG--------PAPERINGRLAMIGFVAALGVEISKGQD------VFA----QL-SDG-------G------ 128 (192)
Q Consensus 81 ~~f~D~lgFsg--------~~aEliNGR~AMLGfvg~l~~E~~tg~~------~~~----Q~-~~~-------g------ 128 (192)
...|||+||+. +++|++||||||||++|+++.|+++..+ .|. +. .+. +
T Consensus 43 D~GFDPLGLs~d~e~~~r~ReaELkHGR~AMLA~~G~lv~E~l~~~G~~~~~~~w~~ag~~~~~~~~~~~~~~P~~~~~q 122 (232)
T 2bhw_A 43 DYGWDTAGLSADPETFSKNRELEVIHSRWAMLGALGSVFPELLSRNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQ 122 (232)
T ss_dssp CCSCCTTCTTCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCSCCSGGGSGGGGGSTTCEEGGGCTTSEEEC
T ss_pred CCCCCCCcCCCCHHHHHHHHHHHHhccchHHHhhhhhhhHHHhccCCcCCcccccccccchhccccchhcccCcchhhHH
Confidence 34699999985 3899999999999999999999976322 121 11 000 0
Q ss_pred hHHHHHH-----HHHHHHHhhhc--ccc-CCCCCCCC-CCC--C---------ChHHHHHHHHHHHHHHHHHHHHHHHhC
Q 029497 129 VAWFLGT-----SVLLTVASLVP--LFK-GVSVESKS-DGF--M---------TSDAELWNGRFAMLGLVALAFTEFVKG 188 (192)
Q Consensus 129 ~~~fl~~-----~~ll~~asl~P--~~~-g~~~e~~~-~G~--f---------t~~AEl~NGRlAMlG~~gl~~~E~vTG 188 (192)
...++.+ ++.++.....- .-. .+...+++ +.+ | .+.+|++||||||+||+|+++||.+||
T Consensus 123 ~i~~~~~~q~~~~g~~E~~r~~~g~~g~~~d~~~Pg~~fdPlgl~~~~~~~~~~~~~E~~nGRlAM~~~~g~~~~~~~tg 202 (232)
T 2bhw_A 123 SILAIWATQVILMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTG 202 (232)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHEETTEECSSSSCCCTTSCTTCTTCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHhhccCcccccccccCCCcccccchhccchHHHHHHHHhhhhccchHHHHHHHHHHHHHhcC
Confidence 0011111 22222221110 000 01111111 111 1 147899999999999999999999999
Q ss_pred CcCC
Q 029497 189 GTLV 192 (192)
Q Consensus 189 ~~l~ 192 (192)
++++
T Consensus 203 ~g~~ 206 (232)
T 2bhw_A 203 KGPL 206 (232)
T ss_dssp SCSH
T ss_pred CChH
Confidence 9863
No 2
>2wsc_2 LHCA2, type II chlorophyll A/B binding protein from photosystem I; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Pisum sativum} PDB: 2wse_2* 2wsf_2* 2o01_2* 3lw5_2*
Probab=99.78 E-value=3.3e-20 Score=161.89 Aligned_cols=110 Identities=17% Similarity=0.143 Sum_probs=64.0
Q ss_pred cccccCCCC--------CchHHHHHHHHHHHHHHHHHHHHHhCCchhh---hhh--------hh-hhHHH-HHHHHHHHH
Q 029497 83 FSEVFAFSG--------PAPERINGRLAMIGFVAALGVEISKGQDVFA---QLS--------DG-GVAWF-LGTSVLLTV 141 (192)
Q Consensus 83 f~D~lgFsg--------~~aEliNGR~AMLGfvg~l~~E~~tg~~~~~---Q~~--------~~-g~~~f-l~~~~ll~~ 141 (192)
.|||+||+. +++|++||||||||++|.++.|++++.++.. ++. .. .+.++ ++++++++.
T Consensus 86 GfDPlGL~~d~e~~~~~r~aElkHGR~AMLA~~G~l~~E~l~~~G~~~~p~w~~aG~~~~~~~~~~l~~~qi~liG~~E~ 165 (269)
T 2wsc_2 86 GFDPLGLGSDPESLRWNVQAELVHSRWAMLGAAGIFIPEFLTKLGILNTPSWYTAGEQEYFTDTTTLFIVELVFIGWAEG 165 (269)
T ss_dssp --------CCCSCCTTTHHHHHHTHHHHTTTTHHHHHHHHHCCTTSSSCCCCCSTTSSSSCCCTTSHHHHHTTHHHHHHH
T ss_pred CCCccccCCCHHHHHHHHHHHHhcchHHHHHHHHhHhHHhhccCCcccCccccccchhhhhcchHHHHHHHHHHHHHHHH
Confidence 489999953 2799999999999999999999998655431 111 10 11111 223455555
Q ss_pred Hhhh-----------ccccCCC------CCCCCC--CC------------CChHHHHHHHHHHHHHHHHHHHHHHHhCCc
Q 029497 142 ASLV-----------PLFKGVS------VESKSD--GF------------MTSDAELWNGRFAMLGLVALAFTEFVKGGT 190 (192)
Q Consensus 142 asl~-----------P~~~g~~------~e~~~~--G~------------ft~~AEl~NGRlAMlG~~gl~~~E~vTG~~ 190 (192)
..+. |.|.+.. ..+++. .+ ..+.+|++|||||||||+|+++||.+||++
T Consensus 166 ~r~~~~~~pG~~g~~p~f~~~~~~~~d~~~PG~~~fDPlgl~~~~~e~~~~~~~~Ei~nGRlAMla~~g~~~~~~~tg~g 245 (269)
T 2wsc_2 166 RRWADILNPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSASPQKLKELRTKEIKNGRLAMLAVMGAWFQHIYTGTG 245 (269)
T ss_dssp HHHTTSSCCCCCSSSCCSSSCCSSTTSCSCTTCSSCCCSSSSSSCCCSCTTSTTTTHHHHHHHHTTTSSSCHHHHHTTTC
T ss_pred HHHhccccCCccccccccccccccccccCCCCCcccCccccCcccHHHHHHHHHhhcccchHHHHHHHHHHHHHHhcCCC
Confidence 4331 1122110 011111 11 135799999999999999999999999998
Q ss_pred CC
Q 029497 191 LV 192 (192)
Q Consensus 191 l~ 192 (192)
++
T Consensus 246 ~l 247 (269)
T 2wsc_2 246 PI 247 (269)
T ss_dssp SS
T ss_pred hH
Confidence 74
No 3
>3pl9_A Chlorophyll A-B binding protein; CP29, light-harvesting COMP membrane protein, plant, photosynthesis, chloroplast, thyla photosystem II; HET: CLA CHL LUT XAT NEX G3P HTG; 2.80A {Spinacia oleracea}
Probab=99.77 E-value=1.1e-18 Score=150.48 Aligned_cols=98 Identities=26% Similarity=0.279 Sum_probs=59.2
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHhCCchhh---h-h----hhhh------h---HHH-HHHHHHHHHHhhhccccCC-CC
Q 029497 93 APERINGRLAMIGFVAALGVEISKGQDVFA---Q-L----SDGG------V---AWF-LGTSVLLTVASLVPLFKGV-SV 153 (192)
Q Consensus 93 ~aEliNGR~AMLGfvg~l~~E~~tg~~~~~---Q-~----~~~g------~---~~f-l~~~~ll~~asl~P~~~g~-~~ 153 (192)
++|++||||||||++|+++.|+++|..++. + + .+.+ + .++ ++++++++...... +.+. ..
T Consensus 94 eaELkHGRwAMLAvlG~lvpE~l~g~~W~~aG~~~~~~g~~y~g~p~~~~i~~l~~~qv~lmG~~E~~R~~~-~~~~~~~ 172 (243)
T 3pl9_A 94 ECELIHGRWAMLATLGALTVEGLTGITWQDAGKVELIEGSSYLGQPLPFSMTTLIWIEVLVIGYIEFQRNAE-LDTEKRL 172 (243)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHSCCTTTHHHHHHHSCEEETTEEECCCHHHHHHHHHHHHHHHHHHHHSC-CCTTTTT
T ss_pred HhhhhcchhHHHHHHHHHhHHhhcCcccccccccccccccccccCccchhhHHHHHHHHHHHHHHHHHhhcc-cCCcccc
Confidence 579999999999999999999998754321 1 0 0000 0 111 12233333322211 0000 00
Q ss_pred CCC----CCCC--------CChHHHHHHHHHHHHHHHHHHHHHHHhCCcC
Q 029497 154 ESK----SDGF--------MTSDAELWNGRFAMLGLVALAFTEFVKGGTL 191 (192)
Q Consensus 154 e~~----~~G~--------ft~~AEl~NGRlAMlG~~gl~~~E~vTG~~l 191 (192)
.++ ..|. ..+.+|+||||+||+||+|+++||++||+++
T Consensus 173 ~PG~~FDPLGl~~d~e~~~~~r~~ElknGRlAMla~~g~~~q~~vtG~Gp 222 (243)
T 3pl9_A 173 YPGGTFDPLGLASDPEKKPILQLAEIKHARLAMVGFLGFAVQAAVTGKGP 222 (243)
T ss_dssp CCCGGGCTTCTTCSTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCH
T ss_pred CCCcchhhccccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHhcCCCh
Confidence 011 1111 1257999999999999999999999999985
No 4
>2wsc_3 LHCA3, type II chlorophyll A/B binding protein from photosystem I; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Glycine max} PDB: 2wse_3* 2wsf_3* 3lw5_3* 2o01_3*
Probab=99.75 E-value=1.1e-20 Score=165.46 Aligned_cols=110 Identities=23% Similarity=0.248 Sum_probs=61.9
Q ss_pred cccccCCCCC-------------chHHHHHHHHHHHHHHHHHHHHHhCCchhh------hhh-----hhh----------
Q 029497 83 FSEVFAFSGP-------------APERINGRLAMIGFVAALGVEISKGQDVFA------QLS-----DGG---------- 128 (192)
Q Consensus 83 f~D~lgFsg~-------------~aEliNGR~AMLGfvg~l~~E~~tg~~~~~------Q~~-----~~g---------- 128 (192)
.|||+||+.+ ++|++|||+||||++++++.|++++.++.. +.. ..+
T Consensus 78 GfDPlGl~d~~~~~~~~~~~~~r~aEl~hGR~AMLa~~G~l~~E~~~~~g~~~~~~p~~w~~~g~ip~aG~~~~~~~~~~ 157 (276)
T 2wsc_3 78 GFDPLGLSDPEGTGGFIEPKWLAYGEIINGRYAMLGAVGAIAPEILGKAGLIPQETALPWFRTGFIPPAGTYNYWADSYT 157 (276)
T ss_dssp -------CCCCCCCCSSSTTHHHHHHHHHHTTSCCTTTSTTSCSSCSSCCCCCCSSCCSSSSCCCC-----CCCSCCCCS
T ss_pred CCCccccCChHhhcchhhHHHHHHHHhhcccchhhhHHHHHHHHHhcccccccccCcchhhhhhcccchhHHHHhccchH
Confidence 4899999642 599999999999999999999998766431 111 011
Q ss_pred hHHH-HHHHHHHHHHhhhc-----------cc--cC------CCCCCCC--CCC--C---------ChHHHHHHHHHHHH
Q 029497 129 VAWF-LGTSVLLTVASLVP-----------LF--KG------VSVESKS--DGF--M---------TSDAELWNGRFAML 175 (192)
Q Consensus 129 ~~~f-l~~~~ll~~asl~P-----------~~--~g------~~~e~~~--~G~--f---------t~~AEl~NGRlAMl 175 (192)
+.|+ ++.+++++.....- .+ .+ +...+++ +.+ | .+.+|++||||||+
T Consensus 158 l~~~qi~liG~~E~~r~~~~~~pG~~g~~p~~g~~~~~~~~~d~~yPG~~~fDPlgl~~~~~~~~~~r~~Ei~nGRlAMl 237 (276)
T 2wsc_3 158 LFVFEMALMGFAEHRRFQDWAKPGSMGKQYFLGLEKGLGGSGEPAYPGGPFFNPLGFGKDEKSLKDLKLKEVKNGRLAML 237 (276)
T ss_dssp TTHHHHHHTHHHHTTTTTGGGSCCCCCCCCSSCSCCCCCCCSSCTTTSSSSCCCCCCSSSCC-----CCSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhcccccCCcccccccccccccccccccccCCCcccccchhcccccHHHHHHHHhhhcccchHHH
Confidence 1111 12233333322110 01 00 0011111 111 1 24789999999999
Q ss_pred HHHHHHHHHHHhCCcCC
Q 029497 176 GLVALAFTEFVKGGTLV 192 (192)
Q Consensus 176 G~~gl~~~E~vTG~~l~ 192 (192)
||+|+++||++||++++
T Consensus 238 a~~g~~~~~~~tg~g~~ 254 (276)
T 2wsc_3 238 AILGYFVQALVTGVGPY 254 (276)
T ss_dssp HHHHHHSSCCCCSSCCS
T ss_pred HHHHHHHHHHhcCCChH
Confidence 99999999999999864
No 5
>2wsc_4 Chlorophyll A-B binding protein P4, chloroplastic; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Pisum sativum} PDB: 2wse_4* 2wsf_4* 3lw5_4* 2o01_4*
Probab=99.75 E-value=1.1e-19 Score=157.07 Aligned_cols=110 Identities=20% Similarity=0.265 Sum_probs=64.8
Q ss_pred CcccccCCCC--------CchHHHHHHHHHHHHHHHHHHHHHhCCchhh---hhhh--------h-hhHHH-HHHHHHHH
Q 029497 82 GFSEVFAFSG--------PAPERINGRLAMIGFVAALGVEISKGQDVFA---QLSD--------G-GVAWF-LGTSVLLT 140 (192)
Q Consensus 82 ~f~D~lgFsg--------~~aEliNGR~AMLGfvg~l~~E~~tg~~~~~---Q~~~--------~-g~~~f-l~~~~ll~ 140 (192)
..|||+||+. +++|++|||+||||++++++.|++++.++.. ++.. . .+.++ ++++++++
T Consensus 74 ~gfDPlGl~~d~e~~~~~r~aEl~hGR~AMla~~G~~~~e~~~~~g~~~~p~w~~aG~~~~~~~~~~l~~~qi~liG~~E 153 (251)
T 2wsc_4 74 NGFDPLGLAEDPENLRWFVQAELVNGRWAMLGVAGMLLPEVFTSIGIINVPKWYAAGKEEYFASSSTLFVIEFILSHYVE 153 (251)
T ss_dssp -------CCCSCCCTTTTHHHHHHHTHHHHHHHTTSSTTSSSCCSCSSCCCCCSCCCSSSCSSCSSCTTTTHHHHHHTTT
T ss_pred CCCCccccCCChHHHHHHHHHHHhccchHHHHHHHHHHHHHhcCCCccCCccccccchHhhhccchHHHHHHHHHHHHHH
Confidence 3599999964 2799999999999999999999998866542 1110 0 11111 12334444
Q ss_pred HHhhh-----------ccccCCCCC------CCC-CCCC-------ChHHHHHHHHHHHHHHHHHHHHHHHhCCcCC
Q 029497 141 VASLV-----------PLFKGVSVE------SKS-DGFM-------TSDAELWNGRFAMLGLVALAFTEFVKGGTLV 192 (192)
Q Consensus 141 ~asl~-----------P~~~g~~~e------~~~-~G~f-------t~~AEl~NGRlAMlG~~gl~~~E~vTG~~l~ 192 (192)
...+. |.|.+...+ +++ +.++ .+.+||||||| ||||+|+++||++||++++
T Consensus 154 ~~r~~~~~~pG~~g~~p~f~~~~~~~~d~~yPGg~FDPLgl~~~~~~k~kELkNGRL-MlAilGf~vQe~vTG~gPl 229 (251)
T 2wsc_4 154 IRRWQDIKNPGSVNQDPIFKQYSLPAGEVGYPGGIFNPLNFAPTLEAKEKEIANGRL-MLAFLGFIIQHNVTGKGPF 229 (251)
T ss_dssp HHHHHHHSSCCCTTCCSSSCSSSSCCHHHHSSCCTTCCCCCCSSSSCTTHHHHHHHT-TTTHHHHHHHHTTSCCCCC
T ss_pred HHHhhcccCCCcccccccccccccccccccCCCCccCccchhHHHHHHHHHHhcchh-HHHHHHHHHHHHhcCccHH
Confidence 43221 112211111 111 1121 25899999999 9999999999999999864
No 6
>2wsc_1 AT3G54890, LHCA1; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Arabidopsis thaliana} PDB: 2wse_1* 2wsf_1* 2o01_1* 3lw5_1*
Probab=99.67 E-value=5.7e-18 Score=145.78 Aligned_cols=108 Identities=19% Similarity=0.131 Sum_probs=63.5
Q ss_pred cccccCCCC--------CchHHHHHHHHHHHHHHHHHHHHHhCCchh-----hhhhh------------hhhHHHHHHHH
Q 029497 83 FSEVFAFSG--------PAPERINGRLAMIGFVAALGVEISKGQDVF-----AQLSD------------GGVAWFLGTSV 137 (192)
Q Consensus 83 f~D~lgFsg--------~~aEliNGR~AMLGfvg~l~~E~~tg~~~~-----~Q~~~------------~g~~~fl~~~~ 137 (192)
.|||+||+. +++|++||||||||++|.++.|+++...+. ..+.. ..+.. ++.+.
T Consensus 67 gfDPlgl~~~~~~~~~~r~~El~hgR~AMla~~G~~~~e~~~~~~~~~a~~~~~~~~g~a~~~~~~~~~~~~~~-i~~iq 145 (241)
T 2wsc_1 67 GFDPLGLGEVPANLERYKESELIHCRWAMLAVPGILVPEALGYGNWVKAQEWAALPGGQATYLGNPVPWGTLPT-ILAIE 145 (241)
T ss_dssp CCSSTTTTTTTTHHHHSHHHHHHHHHHHTTTSTTSSSTTCCCCC-----CCCCSCSSCSSCCSSSCSSSSSHHH-HHHHH
T ss_pred CcCccccCCCHHHHHHHHHHHHhhchhHHhhhhcccchhhccCCccccccchhccCCcchhhhcCcchHHHHHH-HHHHH
Confidence 399999974 279999999999999999999986432221 11110 01111 11111
Q ss_pred HHHHHhhhcccc--CCCC----CCC-CCCC-----------CChHHHHHHHHHHHHHHHHHHHHH-HHhCCcCC
Q 029497 138 LLTVASLVPLFK--GVSV----ESK-SDGF-----------MTSDAELWNGRFAMLGLVALAFTE-FVKGGTLV 192 (192)
Q Consensus 138 ll~~asl~P~~~--g~~~----e~~-~~G~-----------ft~~AEl~NGRlAMlG~~gl~~~E-~vTG~~l~ 192 (192)
++. ..++..++ +.+. .++ .+.+ ..+.+|+||||+||+||+|+++|| .+||++++
T Consensus 146 ~l~-ig~~E~~r~~~~~~~~~~yPgg~fDPlgl~~~~~~~~~~r~~E~~nGRlAM~a~~g~~~~~~~~tG~gpl 218 (241)
T 2wsc_1 146 FLA-IAFVEHQRSMEKDPEKKKYPGGAFDPLGYSKDPKKLEELKVKEIKNGRLALLAFVGFCVQQSAYPGTGPL 218 (241)
T ss_dssp HHH-THHHHHHHTSCCSSCCSSSCSCCSCSSSCSCSSSSCCCSCTTHHHHHHHHHHHHHSGGGGGSSSCCSCCC
T ss_pred HHH-HHHHHHHHHhccCCCCCCCCCCcccccccccchhHHHHHHHhhcccccHHHHHHHHHHHhhhhcCCCchH
Confidence 111 11122111 1000 000 0111 125799999999999999999999 58999864
No 7
>3pl9_A Chlorophyll A-B binding protein; CP29, light-harvesting COMP membrane protein, plant, photosynthesis, chloroplast, thyla photosystem II; HET: CLA CHL LUT XAT NEX G3P HTG; 2.80A {Spinacia oleracea}
Probab=98.72 E-value=1.3e-08 Score=87.77 Aligned_cols=48 Identities=19% Similarity=0.268 Sum_probs=42.0
Q ss_pred CCCCcccccCCCCC--------chHHHHHHHHHHHHHHHHHHHHHhCCchhhhhhh
Q 029497 79 MSTGFSEVFAFSGP--------APERINGRLAMIGFVAALGVEISKGQDVFAQLSD 126 (192)
Q Consensus 79 ~~~~f~D~lgFsg~--------~aEliNGR~AMLGfvg~l~~E~~tg~~~~~Q~~~ 126 (192)
...++|||||+... .+|++|||+||+||++.+++|+.||++.++|+..
T Consensus 173 ~PG~~FDPLGl~~d~e~~~~~r~~ElknGRlAMla~~g~~~q~~vtG~Gpl~~l~~ 228 (243)
T 3pl9_A 173 YPGGTFDPLGLASDPEKKPILQLAEIKHARLAMVGFLGFAVQAAVTGKGPLNNWVT 228 (243)
T ss_dssp CCCGGGCTTCTTCSTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCHHHHHHH
T ss_pred CCCcchhhccccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHhcCCChHHHHHH
Confidence 34578999999742 6999999999999999999999999999888754
No 8
>2bhw_A Chlorophyll A-B binding protein AB80; LHC-II, photosynthesis, light-harvesting, membrane protein, chloroplast, chromophore, membrane; HET: LUX NEX XAT CLA CHL LHG DGD; 2.50A {Pisum sativum} PDB: 1vcr_A* 1rwt_A*
Probab=98.69 E-value=1.6e-08 Score=86.26 Aligned_cols=47 Identities=26% Similarity=0.365 Sum_probs=41.0
Q ss_pred CCCcccccCCCCC--------chHHHHHHHHHHHHHHHHHHHHHhCCchhhhhhh
Q 029497 80 STGFSEVFAFSGP--------APERINGRLAMIGFVAALGVEISKGQDVFAQLSD 126 (192)
Q Consensus 80 ~~~f~D~lgFsg~--------~aEliNGR~AMLGfvg~l~~E~~tg~~~~~Q~~~ 126 (192)
..++|||+||... ..|++|||+||+||++.++.|++||++.+.|+..
T Consensus 157 Pg~~fdPlgl~~~~~~~~~~~~~E~~nGRlAM~~~~g~~~~~~~tg~g~~~~l~~ 211 (232)
T 2bhw_A 157 PGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLAD 211 (232)
T ss_dssp CCTTSCTTCTTCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSCSHHHHHH
T ss_pred CCcccccchhccchHHHHHHHHhhhhccchHHHHHHHHHHHHHhcCCChHHHHHH
Confidence 3568999999753 5899999999999999999999999998887754
No 9
>2wsc_3 LHCA3, type II chlorophyll A/B binding protein from photosystem I; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Glycine max} PDB: 2wse_3* 2wsf_3* 3lw5_3* 2o01_3*
Probab=98.45 E-value=3.2e-08 Score=86.61 Aligned_cols=45 Identities=27% Similarity=0.392 Sum_probs=37.2
Q ss_pred cccccCCCC--------CchHHHHHHHHHHHHHHHHHHHHHhCCchhhhhhhh
Q 029497 83 FSEVFAFSG--------PAPERINGRLAMIGFVAALGVEISKGQDVFAQLSDG 127 (192)
Q Consensus 83 f~D~lgFsg--------~~aEliNGR~AMLGfvg~l~~E~~tg~~~~~Q~~~~ 127 (192)
+||||||.. +..|++|||+||+||++.++.|++||++.++|+...
T Consensus 208 ~fDPlgl~~~~~~~~~~r~~Ei~nGRlAMla~~g~~~~~~~tg~g~~~~l~~H 260 (276)
T 2wsc_3 208 FFNPLGFGKDEKSLKDLKLKEVKNGRLAMLAILGYFVQALVTGVGPYQNLLDH 260 (276)
T ss_dssp SCCCCCCSSSCC-----CCSHHHHHHHHHHHHHHHHSSCCCCSSCCSCC----
T ss_pred cccchhcccccHHHHHHHHhhhcccchHHHHHHHHHHHHHhcCCChHHHHHHh
Confidence 499999963 368999999999999999999999999998887653
No 10
>2wsc_2 LHCA2, type II chlorophyll A/B binding protein from photosystem I; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Pisum sativum} PDB: 2wse_2* 2wsf_2* 2o01_2* 3lw5_2*
Probab=98.44 E-value=3.3e-08 Score=86.28 Aligned_cols=46 Identities=26% Similarity=0.346 Sum_probs=39.8
Q ss_pred CCCc-ccccCCCC---------CchHHHHHHHHHHHHHHHHHHHHHhCCchhhhhh
Q 029497 80 STGF-SEVFAFSG---------PAPERINGRLAMIGFVAALGVEISKGQDVFAQLS 125 (192)
Q Consensus 80 ~~~f-~D~lgFsg---------~~aEliNGR~AMLGfvg~l~~E~~tg~~~~~Q~~ 125 (192)
..++ ||||||.. ...|++|||+||+||++.++.|+++|++.++|+.
T Consensus 196 PG~~~fDPlgl~~~~~e~~~~~~~~Ei~nGRlAMla~~g~~~~~~~tg~g~l~~l~ 251 (269)
T 2wsc_2 196 PGGLWFDPLGWGSASPQKLKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLF 251 (269)
T ss_dssp TTCSSCCCSSSSSSCCCSCTTSTTTTHHHHHHHHTTTSSSCHHHHHTTTCSSCCCS
T ss_pred CCCcccCccccCcccHHHHHHHHHhhcccchHHHHHHHHHHHHHHhcCCChHHHHH
Confidence 3455 99999962 2689999999999999999999999999887765
No 11
>2wsc_1 AT3G54890, LHCA1; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Arabidopsis thaliana} PDB: 2wse_1* 2wsf_1* 2o01_1* 3lw5_1*
Probab=98.43 E-value=5.4e-08 Score=83.70 Aligned_cols=48 Identities=25% Similarity=0.343 Sum_probs=40.3
Q ss_pred CCCCcccccCCCC--------CchHHHHHHHHHHHHHHHHHHH-HHhCCchhhhhhh
Q 029497 79 MSTGFSEVFAFSG--------PAPERINGRLAMIGFVAALGVE-ISKGQDVFAQLSD 126 (192)
Q Consensus 79 ~~~~f~D~lgFsg--------~~aEliNGR~AMLGfvg~l~~E-~~tg~~~~~Q~~~ 126 (192)
...|+|||+||.. +..|++|||+||+|+++.++.| ..+|++.++|+..
T Consensus 167 yPgg~fDPlgl~~~~~~~~~~r~~E~~nGRlAM~a~~g~~~~~~~~tG~gpl~~l~~ 223 (241)
T 2wsc_1 167 YPGGAFDPLGYSKDPKKLEELKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLAT 223 (241)
T ss_dssp SCSCCSCSSSCSCSSSSCCCSCTTHHHHHHHHHHHHHSGGGGGSSSCCSCCCCCSSC
T ss_pred CCCCcccccccccchhHHHHHHHhhcccccHHHHHHHHHHHhhhhcCCCchHHHHHH
Confidence 3456899999964 2689999999999999999999 5799988877654
No 12
>2wsc_4 Chlorophyll A-B binding protein P4, chloroplastic; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Pisum sativum} PDB: 2wse_4* 2wsf_4* 3lw5_4* 2o01_4*
Probab=98.23 E-value=3e-07 Score=79.40 Aligned_cols=45 Identities=27% Similarity=0.401 Sum_probs=39.0
Q ss_pred CCcccccCCCC----CchHHHHHHHHHHHHHHHHHHHHHhCCchhhhhhh
Q 029497 81 TGFSEVFAFSG----PAPERINGRLAMIGFVAALGVEISKGQDVFAQLSD 126 (192)
Q Consensus 81 ~~f~D~lgFsg----~~aEliNGR~AMLGfvg~l~~E~~tg~~~~~Q~~~ 126 (192)
.++||||++.. ...|++|||+ |+|++|.+++|+.||++.++++..
T Consensus 186 Gg~FDPLgl~~~~~~k~kELkNGRL-MlAilGf~vQe~vTG~gPl~nL~~ 234 (251)
T 2wsc_4 186 GGIFNPLNFAPTLEAKEKEIANGRL-MLAFLGFIIQHNVTGKGPFDNLLQ 234 (251)
T ss_dssp CCTTCCCCCCSSSSCTTHHHHHHHT-TTTHHHHHHHHTTSCCCCCCCTTT
T ss_pred CCccCccchhHHHHHHHHHHhcchh-HHHHHHHHHHHHhcCccHHHHHHH
Confidence 45799999863 4789999999 999999999999999998877654
No 13
>2wsc_E PSAE, PSI-E A, photosystem I reaction center subunit IV A, chloroplastic; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Arabidopsis thaliana} PDB: 2wse_E* 2wsf_E* 2o01_E* 3lw5_E*
Probab=35.38 E-value=7.9 Score=30.49 Aligned_cols=21 Identities=24% Similarity=0.427 Sum_probs=0.0
Q ss_pred cccccccccccceeecccccc
Q 029497 34 KYLPSLRRNVNLSVRCTAEDE 54 (192)
Q Consensus 34 ~~~p~~~r~~~~~vr~~~~~~ 54 (192)
+++|..++...|+||+..|..
T Consensus 30 ~f~~~~~~~~rlvvra~e~~a 50 (143)
T 2wsc_E 30 SFLPMRNAGSRLVVRAAEDPA 50 (143)
T ss_dssp ---------------------
T ss_pred EEecccCCCceEEEEcccCCC
Confidence 456666666779999966643
Done!