BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 029499
         (192 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1WYS|A Chain A, Solution Structure Of The First Zf-An1 Domain Of Mouse
          Riken Cdna 2310008m20 Protein
          Length = 75

 Score = 60.5 bits (145), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 26/45 (57%), Positives = 31/45 (68%)

Query: 10 DLGSHCQHQDCHQLDFLPFKCDGCHKVFCFEHRSFKSHECPKSDI 54
          D+G HCQ Q C Q DFLPF CDGC  +FC EHRS  SH C + ++
Sbjct: 12 DIGQHCQVQHCRQRDFLPFVCDGCSGIFCLEHRSKDSHGCSEVNV 56


>pdb|1X4V|A Chain A, Solution Structure Of The Zf-An1 Domain From Human
           Hypothetical Protein Loc130617
          Length = 63

 Score = 29.6 bits (65), Expect = 0.98,   Method: Compositional matrix adjust.
 Identities = 11/24 (45%), Positives = 15/24 (62%)

Query: 118 TCKTCNLKVCLKHRFPADHSCKKD 141
           TC+ C+   C+KHR P DH C  +
Sbjct: 29  TCERCSRNFCIKHRHPLDHDCSGE 52



 Score = 29.6 bits (65), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 11/35 (31%), Positives = 18/35 (51%)

Query: 15 CQHQDCHQLDFLPFKCDGCHKVFCFEHRSFKSHEC 49
          C+   C Q + +   C+ C + FC +HR    H+C
Sbjct: 15 CERAGCRQREMMKLTCERCSRNFCIKHRHPLDHDC 49


>pdb|1WFE|A Chain A, Solution Structure Of The 2nd Zf-An1 Domain Of Mouse
          Riken Cdna 2310008m20 Protein
          Length = 86

 Score = 29.3 bits (64), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 12/40 (30%), Positives = 19/40 (47%)

Query: 15 CQHQDCHQLDFLPFKCDGCHKVFCFEHRSFKSHECPKSDI 54
          C  + C  ++ +   C  C K FC  HR    H+C K ++
Sbjct: 28 CSFKGCTDVELVAVICPYCEKNFCLRHRHQSDHDCEKLEV 67



 Score = 26.6 bits (57), Expect = 8.1,   Method: Compositional matrix adjust.
 Identities = 17/55 (30%), Positives = 24/55 (43%), Gaps = 2/55 (3%)

Query: 96  KQKKPSCPVKRCKEKLTFSNTATCKTCNLKVCLKHRFPADHSCKKDSLLGKNAAA 150
           + K  SC  K C +    +    C  C    CL+HR  +DH C+K  +     AA
Sbjct: 22  EHKSYSCSFKGCTDVELVA--VICPYCEKNFCLRHRHQSDHDCEKLEVAKPRMAA 74


>pdb|1WK1|A Chain A, Solution Structure Of Lectin C-Type Domain Derived From A
           Hypothetical Protein From C. Elegans
          Length = 150

 Score = 26.6 bits (57), Expect = 9.5,   Method: Compositional matrix adjust.
 Identities = 12/31 (38%), Positives = 16/31 (51%)

Query: 106 RCKEKLTFSNTATCKTCNLKVCLKHRFPADH 136
           R  +K     T TC T    +C KHR+ +DH
Sbjct: 106 RSGDKSKVWTTDTCATPRPFICQKHRYDSDH 136


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.323    0.135    0.452 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,388,138
Number of Sequences: 62578
Number of extensions: 191083
Number of successful extensions: 301
Number of sequences better than 100.0: 9
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 291
Number of HSP's gapped (non-prelim): 15
length of query: 192
length of database: 14,973,337
effective HSP length: 93
effective length of query: 99
effective length of database: 9,153,583
effective search space: 906204717
effective search space used: 906204717
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 49 (23.5 bits)