Query 029500
Match_columns 192
No_of_seqs 134 out of 282
Neff 4.1
Searched_HMMs 46136
Date Fri Mar 29 13:54:23 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029500.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/029500hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF06916 DUF1279: Protein of u 100.0 1.9E-29 4.2E-34 188.7 5.9 84 96-179 1-91 (91)
2 KOG4526 Predicted membrane pro 99.9 1.7E-26 3.7E-31 191.4 5.7 153 35-190 5-165 (170)
3 KOG4082 Uncharacterized conser 99.8 9.9E-20 2.1E-24 156.1 3.6 100 90-189 104-209 (268)
4 KOG4526 Predicted membrane pro 90.8 0.067 1.5E-06 45.3 -0.1 46 90-135 45-90 (170)
5 PF14297 DUF4373: Domain of un 38.5 27 0.00059 25.4 2.2 21 96-116 12-32 (87)
6 PF00356 LacI: Bacterial regul 35.1 52 0.0011 21.8 3.0 44 60-108 1-44 (46)
7 COG0821 gcpE 1-hydroxy-2-methy 35.1 33 0.00072 32.4 2.7 40 126-165 150-189 (361)
8 PRK01622 OxaA-like protein pre 27.5 58 0.0013 28.6 2.8 40 58-111 97-136 (256)
9 PF09335 SNARE_assoc: SNARE as 27.4 1.3E+02 0.0028 21.9 4.3 43 94-136 58-101 (123)
10 PF02096 60KD_IMP: 60Kd inner 27.4 52 0.0011 26.9 2.4 34 58-110 36-69 (198)
11 TIGR00612 ispG_gcpE 1-hydroxy- 25.8 60 0.0013 30.5 2.7 50 128-177 150-204 (346)
12 PF05145 AmoA: Putative ammoni 25.2 68 0.0015 28.9 2.9 83 100-188 227-317 (318)
13 PF02937 COX6C: Cytochrome c o 25.2 42 0.00091 24.7 1.3 37 92-129 4-40 (73)
14 PF06695 Sm_multidrug_ex: Puta 23.8 1.9E+02 0.0041 22.6 4.9 43 94-136 61-106 (121)
15 PF10432 bact-PGI_C: Bacterial 23.8 58 0.0012 26.4 2.0 22 114-135 121-142 (155)
16 KOG3817 Uncharacterized conser 23.7 77 0.0017 30.5 3.0 32 94-125 211-242 (452)
17 COG2271 UhpC Sugar phosphate p 23.2 1.5E+02 0.0032 28.9 4.8 43 123-165 39-83 (448)
18 PRK00366 ispG 4-hydroxy-3-meth 22.1 76 0.0016 30.0 2.7 37 128-164 159-195 (360)
19 PRK13717 conjugal transfer pro 21.7 1.3E+02 0.0027 24.7 3.5 80 103-182 15-118 (128)
20 PLN02777 photosystem I P subun 21.6 2.5E+02 0.0054 24.0 5.4 41 103-144 92-133 (167)
21 COG4649 Uncharacterized protei 20.9 80 0.0017 27.8 2.4 26 94-119 15-40 (221)
No 1
>PF06916 DUF1279: Protein of unknown function (DUF1279); InterPro: IPR009688 This entry represents the C terminus (approx. 120 residues) of a number of eukaryotic proteins of unknown function.
Probab=99.96 E-value=1.9e-29 Score=188.67 Aligned_cols=84 Identities=45% Similarity=0.758 Sum_probs=79.1
Q ss_pred HHHHHHHHHhcchhhhhhhhhhhhhhhhhHHHHHcCCCHHHHHHHhCCC---CCC----cCcchhHHHHHHHHHhhcccc
Q 029500 96 DQTKELLAKYGGAYLATSITLSLISFSLCYVLIAAGVDVQALLQKVGIS---TDA----TGEKVGIFALAYAAHKAASPI 168 (192)
Q Consensus 96 qRlK~L~KkYG~vaL~vyi~lS~isf~~~Y~aV~sGVDV~~lL~~vGi~---~~~----~~e~~gtfalAYaihK~l~Pv 168 (192)
||+|+|+|+||+++|+||+++|++||++||++|++|+|+.++++++|++ ++. .++.+|+|++||++||+++|+
T Consensus 1 qr~K~l~k~YG~~~l~vy~~~s~~~~~~~y~~v~~GvDv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lAy~~~K~~~Pv 80 (91)
T PF06916_consen 1 QRLKQLFKKYGYVALGVYLGLSFISLGSCYLAVSSGVDVIALLESLGISVGWESKVEKKKNSSAGTFALAYAIHKLLEPV 80 (91)
T ss_pred CcHHHHHHHhCHhHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhCCccchhhhhhhcccccHHHHHHHHHHHhhhhhh
Confidence 7999999999999999999999999999999999999999999999999 443 256799999999999999999
Q ss_pred cccceeeecHH
Q 029500 169 RFPPTVALTPI 179 (192)
Q Consensus 169 R~plTlaiTP~ 179 (192)
|+++|+++||.
T Consensus 81 R~~lT~~~TP~ 91 (91)
T PF06916_consen 81 RLPLTLAITPY 91 (91)
T ss_pred eeeeeeeecCC
Confidence 99999999994
No 2
>KOG4526 consensus Predicted membrane protein [Function unknown]
Probab=99.93 E-value=1.7e-26 Score=191.40 Aligned_cols=153 Identities=31% Similarity=0.351 Sum_probs=127.2
Q ss_pred cccccchhhhhhhhhhhccCCCccccHHHHhhhhcccccchhhcccccCCCCCC----CCCCChhHHHHHHHHHhcchhh
Q 029500 35 PVWKSCKVRAIKEETEEKTSSSASASAEEITKKYGLEAGLWQIFRSKEEGNAEG----DKKKSRGDQTKELLAKYGGAYL 110 (192)
Q Consensus 35 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~gl~a~~~~~~~sk~~~~~~~----~~k~S~~qRlK~L~KkYG~vaL 110 (192)
+..+.+|||+..+..+.+.-.+..+ ...+++|.+-+.|..-+.++..+..+ +++.++.+.+|..+++||.+++
T Consensus 5 ~~~~~~~c~~~~~~~~~~~~~~~p~---s~~~~~g~~~~~~~~~~~t~~~G~~~~~~k~~k~sk~~~ik~~~~~y~~~~V 81 (170)
T KOG4526|consen 5 RRDKSARCRAARKPLLLLAGASVPP---SQSSKMGTCLSSSNPSYGTETTGVKGSVTKYGKSSKVVYIKFYFADYGAVFV 81 (170)
T ss_pred cccccccCccccCCCCCcccCcCCc---ccCcccCCCcccCCCcccccccccchhhhhhcchhHHHHHHHHHHHcCCceE
Confidence 3456789999988887762211111 11233999999999888777654322 4578899999999999999999
Q ss_pred hhhhhhhhhhhhhhHHHHHcCCCHHHHHHHhCCCCCCcC----cchhHHHHHHHHHhhcccccccceeeecHHHHHHHhc
Q 029500 111 ATSITLSLISFSLCYVLIAAGVDVQALLQKVGISTDATG----EKVGIFALAYAAHKAASPIRFPPTVALTPIVARWIGK 186 (192)
Q Consensus 111 ~vyi~lS~isf~~~Y~aV~sGVDV~~lL~~vGi~~~~~~----e~~gtfalAYaihK~l~PvR~plTlaiTP~IaR~Lrr 186 (192)
.+|+.+|.+++++||+++.+|+|+..++.+.|+++..+. ..+++|++||+|||+|.|||+|+|+++||.+|||||+
T Consensus 82 ~~~~~~s~is~~~~y~vv~sgvd~~~~l~~~g~~e~~~e~k~ssg~s~la~AyaiHKal~pvRvpiT~altP~iar~lr~ 161 (170)
T KOG4526|consen 82 EVHTLGSEISLGLFYAVVNSGVDLVAVLLKSGFSENKVEQKASSGGSELALAYAIHKALAPVRVPITAALTPPIARYLRK 161 (170)
T ss_pred EEeehhhheeheeeeeecccccchHHHHhhhccccchHHHHhhhhhhHHHHHHHHHhhhceeeecceeeccHHHHHHHHh
Confidence 999999999999999999999999999999999988643 2457999999999999999999999999999999999
Q ss_pred cCcc
Q 029500 187 KVEN 190 (192)
Q Consensus 187 ~~~~ 190 (192)
.+-.
T Consensus 162 ~~i~ 165 (170)
T KOG4526|consen 162 KGIL 165 (170)
T ss_pred cccc
Confidence 9854
No 3
>KOG4082 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.77 E-value=9.9e-20 Score=156.11 Aligned_cols=100 Identities=22% Similarity=0.259 Sum_probs=94.7
Q ss_pred CCCChhHHHHHHHHHhcchhhhhhhhhhhhhhhhhHHHHHcCCCHHHHHHHhCCCCCC------cCcchhHHHHHHHHHh
Q 029500 90 KKKSRGDQTKELLAKYGGAYLATSITLSLISFSLCYVLIAAGVDVQALLQKVGISTDA------TGEKVGIFALAYAAHK 163 (192)
Q Consensus 90 ~k~S~~qRlK~L~KkYG~vaL~vyi~lS~isf~~~Y~aV~sGVDV~~lL~~vGi~~~~------~~e~~gtfalAYaihK 163 (192)
.++.+++++|.|+|+||+++|++|...+..||+.+|+++++||||.++|+++++++.. ..|.+|..++||++||
T Consensus 104 A~k~LFAK~K~~fKqYWYiaiPaHaasctaWF~afYllsKSGVDViaLLewiHlpdaIiEKVk~spedaG~vaiali~YK 183 (268)
T KOG4082|consen 104 ANKGLFAKFKHMFKQYWYIAIPAHAASCTAWFGAFYLLSKSGVDVIALLEWIHLPDAIIEKVKGSPEDAGHVAIALICYK 183 (268)
T ss_pred cchhHHHHHHHHHHhheeeeehHHHHHHHHHHHHhheeeccCCcHHHHHHHHcCcHHHHHHhcCCccccchhhHHHHHHH
Confidence 3688999999999999999999999999999999999999999999999999999865 3568999999999999
Q ss_pred hcccccccceeeecHHHHHHHhccCc
Q 029500 164 AASPIRFPPTVALTPIVARWIGKKVE 189 (192)
Q Consensus 164 ~l~PvR~plTlaiTP~IaR~Lrr~~~ 189 (192)
+.+|+|+.+|+.++....++||+.|.
T Consensus 184 iAmPfRY~~TL~~iqasf~tLrq~Gk 209 (268)
T KOG4082|consen 184 IAMPFRYALTLGCIQASFKTLRQHGK 209 (268)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHhCC
Confidence 99999999999999999999999884
No 4
>KOG4526 consensus Predicted membrane protein [Function unknown]
Probab=90.81 E-value=0.067 Score=45.27 Aligned_cols=46 Identities=13% Similarity=0.140 Sum_probs=41.0
Q ss_pred CCCChhHHHHHHHHHhcchhhhhhhhhhhhhhhhhHHHHHcCCCHH
Q 029500 90 KKKSRGDQTKELLAKYGGAYLATSITLSLISFSLCYVLIAAGVDVQ 135 (192)
Q Consensus 90 ~k~S~~qRlK~L~KkYG~vaL~vyi~lS~isf~~~Y~aV~sGVDV~ 135 (192)
...+..++.|.++++||+..+++|+..++.+++.||+.++.+....
T Consensus 45 ~~~t~~~G~~~~~~k~~k~sk~~~ik~~~~~y~~~~V~~~~~~s~i 90 (170)
T KOG4526|consen 45 SYGTETTGVKGSVTKYGKSSKVVYIKFYFADYGAVFVEVHTLGSEI 90 (170)
T ss_pred cccccccccchhhhhhcchhHHHHHHHHHHHcCCceEEEeehhhhe
Confidence 4567789999999999999999999999999999999999866443
No 5
>PF14297 DUF4373: Domain of unknown function (DUF4373)
Probab=38.51 E-value=27 Score=25.38 Aligned_cols=21 Identities=24% Similarity=0.325 Sum_probs=18.6
Q ss_pred HHHHHHHHHhcchhhhhhhhh
Q 029500 96 DQTKELLAKYGGAYLATSITL 116 (192)
Q Consensus 96 qRlK~L~KkYG~vaL~vyi~l 116 (192)
.+++.|.++||..+.++|+.+
T Consensus 12 ~ki~~l~~~~G~~G~~~y~~l 32 (87)
T PF14297_consen 12 PKIRRLMAEYGCEGYGIYWYL 32 (87)
T ss_pred HHHHHHHHHcCCchHHHHHHH
Confidence 679999999999999988765
No 6
>PF00356 LacI: Bacterial regulatory proteins, lacI family; InterPro: IPR000843 Numerous bacterial transcription regulatory proteins bind DNA via a helix-turn-helix (HTH) motif. These proteins are very diverse, but for convenience may be grouped into subfamilies on the basis of sequence similarity. One such family groups together a range of proteins, including ascG, ccpA, cytR, ebgR, fruR, galR, galS, lacI, malI, opnR, purF, rafR, rbtR and scrR [, ]. Within this family, the HTH motif is situated towards the N terminus.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 3KJX_C 1ZAY_A 1VPW_A 2PUA_A 1QQA_A 1PNR_A 1JFT_A 1QP4_A 2PUD_A 1JH9_A ....
Probab=35.14 E-value=52 Score=21.81 Aligned_cols=44 Identities=9% Similarity=0.102 Sum_probs=31.7
Q ss_pred cHHHHhhhhcccccchhhcccccCCCCCCCCCCChhHHHHHHHHHhcch
Q 029500 60 SAEEITKKYGLEAGLWQIFRSKEEGNAEGDKKKSRGDQTKELLAKYGGA 108 (192)
Q Consensus 60 ~~~~~~~k~gl~a~~~~~~~sk~~~~~~~~~k~S~~qRlK~L~KkYG~v 108 (192)
+.+++++..|+...-=++.-+....- .....+|+.+..+++|+.
T Consensus 1 Ti~dIA~~agvS~~TVSr~ln~~~~v-----s~~tr~rI~~~a~~lgY~ 44 (46)
T PF00356_consen 1 TIKDIAREAGVSKSTVSRVLNGPPRV-----SEETRERILEAAEELGYR 44 (46)
T ss_dssp CHHHHHHHHTSSHHHHHHHHTTCSSS-----THHHHHHHHHHHHHHTB-
T ss_pred CHHHHHHHHCcCHHHHHHHHhCCCCC-----CHHHHHHHHHHHHHHCCC
Confidence 35788899998877766655544211 345889999999999974
No 7
>COG0821 gcpE 1-hydroxy-2-methyl-2-(e)-butenyl 4-diphosphate synthase [Lipid metabolism]
Probab=35.13 E-value=33 Score=32.37 Aligned_cols=40 Identities=20% Similarity=0.261 Sum_probs=24.7
Q ss_pred HHHHcCCCHHHHHHHhCCCCCCcCcchhHHHHHHHHHhhc
Q 029500 126 VLIAAGVDVQALLQKVGISTDATGEKVGIFALAYAAHKAA 165 (192)
Q Consensus 126 ~aV~sGVDV~~lL~~vGi~~~~~~e~~gtfalAYaihK~l 165 (192)
.+|.+-+.-..+++.+|+++-.++-+.++...+...|..+
T Consensus 150 alveSAl~~a~~~e~l~f~~i~iS~K~Sdv~~~v~aYr~l 189 (361)
T COG0821 150 ALVESALEHAELLEELGFDDIKVSVKASDVQLMVAAYRLL 189 (361)
T ss_pred HHHHHHHHHHHHHHHCCCCcEEEEEEcCCHHHHHHHHHHH
Confidence 4555555566788888888644445566555555555544
No 8
>PRK01622 OxaA-like protein precursor; Validated
Probab=27.51 E-value=58 Score=28.63 Aligned_cols=40 Identities=20% Similarity=0.152 Sum_probs=25.1
Q ss_pred cccHHHHhhhhcccccchhhcccccCCCCCCCCCCChhHHHHHHHHHhcchhhh
Q 029500 58 SASAEEITKKYGLEAGLWQIFRSKEEGNAEGDKKKSRGDQTKELLAKYGGAYLA 111 (192)
Q Consensus 58 ~~~~~~~~~k~gl~a~~~~~~~sk~~~~~~~~~k~S~~qRlK~L~KkYG~vaL~ 111 (192)
+++.+++-+||. ++. ++++.....+.++++.|+||..-+.
T Consensus 97 qP~l~~iq~kyk----------~~~----d~~~~~~~~~e~~~Lyk~~gi~P~~ 136 (256)
T PRK01622 97 KPELDKIQAKLK----------VTK----DLEKQKEYQKEMMELYKSGNINPLA 136 (256)
T ss_pred CHHHHHHHHHHh----------ccC----CHHHHHHHHHHHHHHHHHcCCCCch
Confidence 578889999882 110 1111122456789999999966544
No 9
>PF09335 SNARE_assoc: SNARE associated Golgi protein; InterPro: IPR015414 This is a entry contains SNARE associated Golgi proteins. The yeast member of this family (P36164 from SWISSPROT) localises with the t-SNARE Tlg2 [].
Probab=27.43 E-value=1.3e+02 Score=21.95 Aligned_cols=43 Identities=16% Similarity=0.080 Sum_probs=31.8
Q ss_pred hhHHHHHHHHHhcchhhhhhhhhhhh-hhhhhHHHHHcCCCHHH
Q 029500 94 RGDQTKELLAKYGGAYLATSITLSLI-SFSLCYVLIAAGVDVQA 136 (192)
Q Consensus 94 ~~qRlK~L~KkYG~vaL~vyi~lS~i-sf~~~Y~aV~sGVDV~~ 136 (192)
..+++.+.+++||...+.+-..+-.+ .-..+|++--.+++...
T Consensus 58 ~~~~~~~~~~~~g~~~l~~~~~~P~~P~~~~~~~ag~~~~~~~~ 101 (123)
T PF09335_consen 58 RIERIERWFQKYGFWVLFLSRFIPGLPFDVVNYLAGITRMPFRR 101 (123)
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHccHHHHHHHHHccCCCHHH
Confidence 34569999999999887777777765 66667777777776544
No 10
>PF02096 60KD_IMP: 60Kd inner membrane protein; InterPro: IPR001708 This family of proteins is required for the insertion of integral membrane proteins into cellular membranes. Many of these integral membrane proteins are associated with respiratory chain complexes, for example a large number of members of this family play an essential role in the activity and assembly of cytochrome c oxidase. Stage III sporulation protein J (SP3J) is a probable lipoprotein, rich in basic and hydrophobic amino acids. Mutations in the protein abolish the transcription of prespore-specific genes transcribed by the sigma G form of RNA polymerase []. SP3J could be involved in a signal transduction pathway coupling gene expression in the prespore to events in the mother cell, or it may be necessary for essential metabolic interactions between the two cells []. The protein shows a high degree of similarity to Bacillus subtilis YQJG, to yeast OXA1 and also to bacterial 60 kDa inner-membrane proteins [, , , ]. ; GO: 0051205 protein insertion into membrane, 0016021 integral to membrane
Probab=27.41 E-value=52 Score=26.93 Aligned_cols=34 Identities=26% Similarity=0.393 Sum_probs=24.0
Q ss_pred cccHHHHhhhhcccccchhhcccccCCCCCCCCCCChhHHHHHHHHHhcchhh
Q 029500 58 SASAEEITKKYGLEAGLWQIFRSKEEGNAEGDKKKSRGDQTKELLAKYGGAYL 110 (192)
Q Consensus 58 ~~~~~~~~~k~gl~a~~~~~~~sk~~~~~~~~~k~S~~qRlK~L~KkYG~vaL 110 (192)
.++.+++.+|| + ++ +.-..++++++.|+||.--+
T Consensus 36 ~P~l~~i~~k~------------~----~~---~~~~~~~~~~l~k~~~~~p~ 69 (198)
T PF02096_consen 36 QPELKEIQEKY------------K----ED---QQKMQQEMQKLYKKHGVNPL 69 (198)
T ss_pred HHHHHHHHHhh------------h----HH---HHHHHHHHHHHHHHcCCCcH
Confidence 46777888998 1 01 12277889999999996554
No 11
>TIGR00612 ispG_gcpE 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase. Chlamydial members of the family have a long insert. The family is largely restricted to Bacteria, where it is widely but not universally distributed. No homology can be detected between the GcpE family and other proteins.
Probab=25.83 E-value=60 Score=30.54 Aligned_cols=50 Identities=22% Similarity=0.220 Sum_probs=26.3
Q ss_pred HHcCCCHHHHHHHhCCCCCCcCcchhHHHHHHHHHhhc-----ccccccceeeec
Q 029500 128 IAAGVDVQALLQKVGISTDATGEKVGIFALAYAAHKAA-----SPIRFPPTVALT 177 (192)
Q Consensus 128 V~sGVDV~~lL~~vGi~~~~~~e~~gtfalAYaihK~l-----~PvR~plTlaiT 177 (192)
|.+-.+-..+++.+||.+--++=+.++......+|+++ .|+-+++|=|.|
T Consensus 150 veSAl~~v~~le~~~F~diviS~KsSdv~~~i~ayr~la~~~dyPLHlGVTEAG~ 204 (346)
T TIGR00612 150 VQSALEEAAILEKLGFRNVVLSMKASDVAETVAAYRLLAERSDYPLHLGVTEAGM 204 (346)
T ss_pred HHHHHHHHHHHHHCCCCcEEEEEEcCCHHHHHHHHHHHHhhCCCCceeccccCCC
Confidence 34444556678888887644444455444444444443 344444444443
No 12
>PF05145 AmoA: Putative ammonia monooxygenase; InterPro: IPR007820 This family contains sequences annotated as ammonia monooxygenase. The AmoA gene product from Pseudomonas putida has been characterised as ammonia monooxygenase []. Ammonia monooxygenase catalyses the oxidation of NH(3) to NH(2)OH.
Probab=25.20 E-value=68 Score=28.94 Aligned_cols=83 Identities=20% Similarity=0.323 Sum_probs=48.9
Q ss_pred HHHHHhcchhhhhhhhhhhhhhhhhHHHHH-cCCCHHHHHHHh---CCCCCC-cCc--ch-hHHHHHHHHHhhccccccc
Q 029500 100 ELLAKYGGAYLATSITLSLISFSLCYVLIA-AGVDVQALLQKV---GISTDA-TGE--KV-GIFALAYAAHKAASPIRFP 171 (192)
Q Consensus 100 ~L~KkYG~vaL~vyi~lS~isf~~~Y~aV~-sGVDV~~lL~~v---Gi~~~~-~~e--~~-gtfalAYaihK~l~PvR~p 171 (192)
..+++|...++..-+.+-.+.+.+-|++-+ .|+|....+=.. |+++-. ++. .+ -.++.++- -+|+.
T Consensus 227 ~~~~~~~~~~l~~~~~~l~~~~~~a~~l~~~~~~~~~t~~La~aPGGl~eM~l~A~~l~~d~~~V~~~q------~~Rl~ 300 (318)
T PF05145_consen 227 RELRRLLPPALLSTLLLLALCALFAWLLSRLTGIDFLTALLATAPGGLAEMALIALALGADVAFVAAHQ------VVRLL 300 (318)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHhCCccHHHHHHHHHHcCCChHHHHHHH------HHHHH
Confidence 345666666666666666666666666655 488876543322 222211 000 11 12333332 34888
Q ss_pred ceeeecHHHHHHHhccC
Q 029500 172 PTVALTPIVARWIGKKV 188 (192)
Q Consensus 172 lTlaiTP~IaR~Lrr~~ 188 (192)
.-+.+.|.++|+++|++
T Consensus 301 ~v~~~~p~~~r~~~r~~ 317 (318)
T PF05145_consen 301 FVLLLAPFIARWLRRRR 317 (318)
T ss_pred HHHHHHHHHHHHHHHhc
Confidence 89999999999999875
No 13
>PF02937 COX6C: Cytochrome c oxidase subunit VIc; InterPro: IPR004204 Cytochrome c oxidase, a 13 subunit complex, 1.9.3.1 from EC is the terminal oxidase in the mitochondrial electron transport chain. This family is composed of cytochrome c oxidase subunit VIc.; GO: 0004129 cytochrome-c oxidase activity; PDB: 3AG4_I 2DYS_V 3ASO_I 2EIK_V 2EIM_I 1OCC_V 1V54_V 1OCO_V 3ASN_V 2EIL_I ....
Probab=25.15 E-value=42 Score=24.66 Aligned_cols=37 Identities=22% Similarity=0.108 Sum_probs=28.4
Q ss_pred CChhHHHHHHHHHhcchhhhhhhhhhhhhhhhhHHHHH
Q 029500 92 KSRGDQTKELLAKYGGAYLATSITLSLISFSLCYVLIA 129 (192)
Q Consensus 92 ~S~~qRlK~L~KkYG~vaL~vyi~lS~isf~~~Y~aV~ 129 (192)
+.+.| |+.|+.++..--|++.+++|++.-.++++++.
T Consensus 4 l~KP~-mrgll~~~l~~~i~~a~~ls~~~~~~~kf~v~ 40 (73)
T PF02937_consen 4 LAKPQ-MRGLLAKRLKRHIVVAFVLSLGVAAAYKFGVA 40 (73)
T ss_dssp -------BSHHHHHHHHHHHHHHHHHHHHHHHHHHHTH
T ss_pred ccCch-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34445 89999999999999999999999888888775
No 14
>PF06695 Sm_multidrug_ex: Putative small multi-drug export protein; InterPro: IPR009577 This family contains a small number of putative small multi-drug export proteins.
Probab=23.83 E-value=1.9e+02 Score=22.58 Aligned_cols=43 Identities=16% Similarity=0.234 Sum_probs=28.7
Q ss_pred hhHHHHHHHHHhcchhhhhhhhh---hhhhhhhhHHHHHcCCCHHH
Q 029500 94 RGDQTKELLAKYGGAYLATSITL---SLISFSLCYVLIAAGVDVQA 136 (192)
Q Consensus 94 ~~qRlK~L~KkYG~vaL~vyi~l---S~isf~~~Y~aV~sGVDV~~ 136 (192)
..+|-++.++|||..+|.....+ ......++-.+.-.|.|...
T Consensus 61 k~~~~~~~i~kyg~~GL~lFVaIPlP~TG~wtgal~a~llg~~~~~ 106 (121)
T PF06695_consen 61 KAEKKSKKIEKYGFWGLALFVAIPLPGTGAWTGALIASLLGMDKKK 106 (121)
T ss_pred HHHHHHHHHHHHhHHHHHHHHhCCCCcchHHHHHHHHHHhCCCHHH
Confidence 34567889999999988877655 34444555555555666543
No 15
>PF10432 bact-PGI_C: Bacterial phospho-glucose isomerase C-terminal region; InterPro: IPR019490 Phosphoglucose isomerase (PGI) catalyses the interconversion of phosphoglucose and phosphofructose, and is a component of many sugar metabolic pathways. In some archaea and bacteria PGI activity occurs via a bifunctional enzyme that also exhibits phosphomannose isomerase (PMI) activity. Though not closely related to eukaryotic PGIs, the bifunctional enzyme is similar enough that the sequence includes the cluster of threonines and serines that forms the sugar phosphate-binding site in conventional PGI. This entry represents the C-terminal half of the bifunctional PGI/PMI enzyme, which contains many of the active catalytic site residues. The enzyme is thought to use the same catalytic mechanisms for both glucose ring-opening and isomerisation for the interconversion of glucose 6-phosphate to fructose 6-phosphate [].; GO: 0004347 glucose-6-phosphate isomerase activity, 0004476 mannose-6-phosphate isomerase activity; PDB: 1TZB_A 1X9H_A 1TZC_B 1X9I_A 1WIW_A.
Probab=23.76 E-value=58 Score=26.40 Aligned_cols=22 Identities=23% Similarity=0.344 Sum_probs=17.1
Q ss_pred hhhhhhhhhhhHHHHHcCCCHH
Q 029500 114 ITLSLISFSLCYVLIAAGVDVQ 135 (192)
Q Consensus 114 i~lS~isf~~~Y~aV~sGVDV~ 135 (192)
-++.++||..+|+++-.|+|..
T Consensus 121 ~li~l~d~aS~YLA~~~GvDP~ 142 (155)
T PF10432_consen 121 SLIYLGDYASVYLALLYGVDPT 142 (155)
T ss_dssp HHHHHHHHHHHHHHHHCT--SS
T ss_pred HHHHHHHHHHHHHHHHhCcCCC
Confidence 4578899999999999999853
No 16
>KOG3817 consensus Uncharacterized conserved protein [Function unknown]
Probab=23.71 E-value=77 Score=30.53 Aligned_cols=32 Identities=28% Similarity=0.549 Sum_probs=29.6
Q ss_pred hhHHHHHHHHHhcchhhhhhhhhhhhhhhhhH
Q 029500 94 RGDQTKELLAKYGGAYLATSITLSLISFSLCY 125 (192)
Q Consensus 94 ~~qRlK~L~KkYG~vaL~vyi~lS~isf~~~Y 125 (192)
.++-++.++.+|..-.|+-.+.+.+++|..||
T Consensus 211 l~~nLq~Iwieyr~yvLgYvlivgliSfaVCY 242 (452)
T KOG3817|consen 211 LADNLQLIWIEYRDYVLGYVLIVGLISFAVCY 242 (452)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 56779999999999999999999999999999
No 17
>COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism]
Probab=23.22 E-value=1.5e+02 Score=28.94 Aligned_cols=43 Identities=21% Similarity=0.359 Sum_probs=33.0
Q ss_pred hhHHHHHcC--CCHHHHHHHhCCCCCCcCcchhHHHHHHHHHhhc
Q 029500 123 LCYVLIAAG--VDVQALLQKVGISTDATGEKVGIFALAYAAHKAA 165 (192)
Q Consensus 123 ~~Y~aV~sG--VDV~~lL~~vGi~~~~~~e~~gtfalAYaihK~l 165 (192)
.+|++++.. +-..++++..|++..+.+=-.+.|-++|++.|.+
T Consensus 39 a~fYl~RknF~~a~p~l~e~~~lsk~~lG~i~s~f~i~YG~sKf~ 83 (448)
T COG2271 39 AAFYLTRKNFNLAMPALIEDGGLSKTQLGILGSAFSITYGVSKFV 83 (448)
T ss_pred HHHHHHHHhHhhccHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 345556654 4556899999998887766678999999999975
No 18
>PRK00366 ispG 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; Reviewed
Probab=22.15 E-value=76 Score=30.00 Aligned_cols=37 Identities=14% Similarity=0.136 Sum_probs=20.1
Q ss_pred HHcCCCHHHHHHHhCCCCCCcCcchhHHHHHHHHHhh
Q 029500 128 IAAGVDVQALLQKVGISTDATGEKVGIFALAYAAHKA 164 (192)
Q Consensus 128 V~sGVDV~~lL~~vGi~~~~~~e~~gtfalAYaihK~ 164 (192)
|.+-.+-..+++.+||.+--++=+.++......+|++
T Consensus 159 veSAl~~~~~le~~~f~~iviS~KsS~v~~~i~ayrl 195 (360)
T PRK00366 159 VESALRHAKILEELGFDDIKISVKASDVQDLIAAYRL 195 (360)
T ss_pred HHHHHHHHHHHHHCCCCcEEEEEEcCCHHHHHHHHHH
Confidence 3344445567778888654444445555444444444
No 19
>PRK13717 conjugal transfer protein TrbI; Provisional
Probab=21.71 E-value=1.3e+02 Score=24.72 Aligned_cols=80 Identities=11% Similarity=0.167 Sum_probs=49.9
Q ss_pred HHhcchhhhhhhhhhhhhhhhhHHHHHcC------CCHHHHHHH----hC---CCCCCc-------CcchhHHHHHHH-H
Q 029500 103 AKYGGAYLATSITLSLISFSLCYVLIAAG------VDVQALLQK----VG---ISTDAT-------GEKVGIFALAYA-A 161 (192)
Q Consensus 103 KkYG~vaL~vyi~lS~isf~~~Y~aV~sG------VDV~~lL~~----vG---i~~~~~-------~e~~gtfalAYa-i 161 (192)
++||++.++.-+++-+++.++.|++++.. .|+...++. .+ +++... +-.+-..+-+|. =
T Consensus 15 ~~~~~~~~~~~~~~~~~~a~~s~~~~~~~~P~iV~FDmK~Tld~F~~Q~~~~~lte~q~e~lt~rF~~aL~~~L~~yq~~ 94 (128)
T PRK13717 15 RSHWWWTVPGCLAMVLLNAAVSYGIVRLNAPVTAAFNMKQTVDAFFDSASQKQLSEAQSKALSARFNTALEASLQAWQQK 94 (128)
T ss_pred hhcchHHHHHHHHHHHHHHHHHHHHhhcCCCeEEEEehHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 57899999999999999999999999974 277665554 43 222111 111334567787 5
Q ss_pred Hhh---cccccccceeeecHHHHH
Q 029500 162 HKA---ASPIRFPPTVALTPIVAR 182 (192)
Q Consensus 162 hK~---l~PvR~plTlaiTP~IaR 182 (192)
|+. ..|.=+.-+.=+|+-|..
T Consensus 95 H~~VILVspAVv~GA~DIT~EIq~ 118 (128)
T PRK13717 95 HHAVILVSPAVVQGAPDITREIQQ 118 (128)
T ss_pred CCEEEEechhhhcCCCCCcHHHHH
Confidence 664 344444444455665543
No 20
>PLN02777 photosystem I P subunit (PSI-P)
Probab=21.61 E-value=2.5e+02 Score=24.00 Aligned_cols=41 Identities=27% Similarity=0.252 Sum_probs=20.7
Q ss_pred HHhcchhhhhhhhhhhhhhhhhHHHHHcCCC-HHHHHHHhCCC
Q 029500 103 AKYGGAYLATSITLSLISFSLCYVLIAAGVD-VQALLQKVGIS 144 (192)
Q Consensus 103 KkYG~vaL~vyi~lS~isf~~~Y~aV~sGVD-V~~lL~~vGi~ 144 (192)
.||..+.+++...+.+.-....--+|+ .+- +..+||.+|+.
T Consensus 92 dK~av~~l~~aaiVal~v~~~VL~AId-~lPLlP~lLELVGig 133 (167)
T PLN02777 92 DKYAVSSLAFAGVVALWGSAGMISAID-RLPLVPGVLELVGIG 133 (167)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHh-ccccccchHHHhhhh
Confidence 456666655555554442222222222 222 45688888876
No 21
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=20.86 E-value=80 Score=27.85 Aligned_cols=26 Identities=31% Similarity=0.488 Sum_probs=20.4
Q ss_pred hhHHHHHHHHHhcchhhhhhhhhhhh
Q 029500 94 RGDQTKELLAKYGGAYLATSITLSLI 119 (192)
Q Consensus 94 ~~qRlK~L~KkYG~vaL~vyi~lS~i 119 (192)
..+|+|.++++||.+.+++-+.+-+.
T Consensus 15 RsEq~~~lw~rfgp~v~giailvVlG 40 (221)
T COG4649 15 RSEQAKTLWKRFGPAVIGIAILVVLG 40 (221)
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHhc
Confidence 46899999999999988876654433
Done!