Query 029500
Match_columns 192
No_of_seqs 134 out of 282
Neff 4.1
Searched_HMMs 29240
Date Mon Mar 25 22:57:47 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029500.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/029500hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1ytr_A Bacteriocin plantaricin 32.3 13 0.00045 21.5 0.6 15 93-107 12-26 (26)
2 2jrt_A Uncharacterized protein 23.7 60 0.002 23.5 3.0 41 40-86 37-77 (95)
3 2oa4_A SIR5; structure, struct 17.8 37 0.0013 25.3 0.8 44 58-101 50-93 (101)
4 2kog_A Vesicle-associated memb 17.1 1.5E+02 0.0052 22.2 4.2 38 91-128 77-114 (119)
5 3arc_T Photosystem II reaction 17.1 80 0.0027 19.3 2.0 19 111-129 4-22 (32)
6 2l8n_A Transcriptional repress 15.4 1.3E+02 0.0045 19.9 3.1 45 59-108 10-54 (67)
7 1uxc_A FRUR (1-57), fructose r 14.9 1.3E+02 0.0046 19.8 3.0 47 60-108 2-48 (65)
8 3fh2_A Probable ATP-dependent 14.5 2.6E+02 0.0088 20.3 4.8 80 60-141 46-140 (146)
9 3fes_A ATP-dependent CLP endop 14.0 2.2E+02 0.0077 20.7 4.4 79 60-141 47-140 (145)
10 4aj5_1 SKA3, spindle and kinet 12.2 82 0.0028 23.8 1.4 12 95-106 90-101 (101)
No 1
>1ytr_A Bacteriocin plantaricin A; antibiotic, pheromone, amphipathic helix, micelle; NMR {Synthetic}
Probab=32.35 E-value=13 Score=21.48 Aligned_cols=15 Identities=33% Similarity=0.434 Sum_probs=11.9
Q ss_pred ChhHHHHHHHHHhcc
Q 029500 93 SRGDQTKELLAKYGG 107 (192)
Q Consensus 93 S~~qRlK~L~KkYG~ 107 (192)
+-..+.|.|+|++||
T Consensus 12 taikqvkklfkkwgw 26 (26)
T 1ytr_A 12 TAIKQVKKLFKKWGW 26 (26)
T ss_dssp HHHHHHHHHHTTCCC
T ss_pred HHHHHHHHHHHHcCC
Confidence 345678999999987
No 2
>2jrt_A Uncharacterized protein; solution, structure, NESG, PSI, target RHR5, structural genomics, protein structure initiative; NMR {Rhodobacter sphaeroides}
Probab=23.69 E-value=60 Score=23.47 Aligned_cols=41 Identities=17% Similarity=0.271 Sum_probs=30.1
Q ss_pred chhhhhhhhhhhccCCCccccHHHHhhhhcccccchhhcccccCCCC
Q 029500 40 CKVRAIKEETEEKTSSSASASAEEITKKYGLEAGLWQIFRSKEEGNA 86 (192)
Q Consensus 40 ~~~~~~~~~~~~~~~~~~~~~~~~~~~k~gl~a~~~~~~~sk~~~~~ 86 (192)
++.+.+++--+. ..+..|++++|||....+..|...-.+.+
T Consensus 37 ~Kl~VV~~~~~g------~~s~~e~arry~Is~s~i~~W~r~~~~~G 77 (95)
T 2jrt_A 37 RKAAVVKAVIHG------LITEREALDRYSLSEEEFALWRSAVAAHG 77 (95)
T ss_dssp HHHHHHHHHHTT------SSCHHHHHHHTTCCHHHHHHHHHHTTTCC
T ss_pred HHHHHHHHHHcC------CCCHHHHHHHhCCCHHHHHHHHHHHHHHh
Confidence 444455544443 37899999999999999999998865444
No 3
>2oa4_A SIR5; structure, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; NMR {Silicibacter pomeroyi} SCOP: a.4.12.3
Probab=17.77 E-value=37 Score=25.25 Aligned_cols=44 Identities=16% Similarity=0.199 Sum_probs=31.6
Q ss_pred cccHHHHhhhhcccccchhhcccccCCCCCCCCCCChhHHHHHH
Q 029500 58 SASAEEITKKYGLEAGLWQIFRSKEEGNAEGDKKKSRGDQTKEL 101 (192)
Q Consensus 58 ~~~~~~~~~k~gl~a~~~~~~~sk~~~~~~~~~k~S~~qRlK~L 101 (192)
.-|.+|++++|+|...-+..|.+.-++.+...-+.+..|+.++.
T Consensus 50 ~lS~~EAa~ry~Is~~ei~~W~r~y~~~G~~aLr~t~~q~~r~~ 93 (101)
T 2oa4_A 50 LITLAEAKQTYGLSDEEFNSWVSALAEHGKDALKVTALKKYRQL 93 (101)
T ss_dssp TCCHHHHHHTTCSSHHHHHHHHHHHHCCCSSSSCCHHHHHHHHT
T ss_pred CCCHHHHHHHhCCCHHHHHHHHHHHHHHhHHHhccccchhhhhh
Confidence 36789999999999999999998866555443344455555543
No 4
>2kog_A Vesicle-associated membrane protein 2; synaptobrevin, VAMP2, DPC micelle, snare, coiled coil, membrane fusion, transmembrane; NMR {Rattus norvegicus}
Probab=17.12 E-value=1.5e+02 Score=22.20 Aligned_cols=38 Identities=21% Similarity=0.192 Sum_probs=27.0
Q ss_pred CCChhHHHHHHHHHhcchhhhhhhhhhhhhhhhhHHHH
Q 029500 91 KKSRGDQTKELLAKYGGAYLATSITLSLISFSLCYVLI 128 (192)
Q Consensus 91 k~S~~qRlK~L~KkYG~vaL~vyi~lS~isf~~~Y~aV 128 (192)
...+..+.+++-++++|--+-.++.+.++-+.++|+.+
T Consensus 77 S~~F~k~A~kl~rkmwwkn~K~~iii~~iv~iii~iIi 114 (119)
T 2kog_A 77 ASQFETSAAKLKRKYWWKNLKMMIILGVICAIILIIII 114 (119)
T ss_dssp SHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34566677788888888877777777766666666554
No 5
>3arc_T Photosystem II reaction center protein T; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 1s5l_T* 2axt_T* 3bz1_T* 3bz2_T* 3kzi_T* 3prq_T* 3prr_T* 3a0b_T* 3a0h_T*
Probab=17.10 E-value=80 Score=19.27 Aligned_cols=19 Identities=16% Similarity=0.135 Sum_probs=15.8
Q ss_pred hhhhhhhhhhhhhhHHHHH
Q 029500 111 ATSITLSLISFSLCYVLIA 129 (192)
Q Consensus 111 ~vyi~lS~isf~~~Y~aV~ 129 (192)
.+|..+-+..++++|++|-
T Consensus 4 ~vYt~ll~~tlgiiFFAI~ 22 (32)
T 3arc_T 4 ITYVFIFACIIALFFFAIF 22 (32)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhh
Confidence 4788888888999998885
No 6
>2l8n_A Transcriptional repressor CYTR; bacterial gene repressor, helix turn helix binding domain, L family, transcription regulation, binding protein; NMR {Escherichia coli} PDB: 2lcv_A
Probab=15.38 E-value=1.3e+02 Score=19.95 Aligned_cols=45 Identities=7% Similarity=0.047 Sum_probs=32.7
Q ss_pred ccHHHHhhhhcccccchhhcccccCCCCCCCCCCChhHHHHHHHHHhcch
Q 029500 59 ASAEEITKKYGLEAGLWQIFRSKEEGNAEGDKKKSRGDQTKELLAKYGGA 108 (192)
Q Consensus 59 ~~~~~~~~k~gl~a~~~~~~~sk~~~~~~~~~k~S~~qRlK~L~KkYG~v 108 (192)
.+..++++..|+.-.--++.-+.... -.....+|+.+.+++.|+.
T Consensus 10 ~t~~diA~~aGVS~sTVSr~ln~~~~-----vs~~t~~rV~~~a~~lgY~ 54 (67)
T 2l8n_A 10 ATMKDVALKAKVSTATVSRALMNPDK-----VSQATRNRVEKAAREVGYL 54 (67)
T ss_dssp CCHHHHHHHTTCCHHHHHHTTTCCCC-----SCHHHHHHHHHHHHHHCCC
T ss_pred CCHHHHHHHHCCCHHHHHHHHcCCCC-----CCHHHHHHHHHHHHHhCCC
Confidence 47899999999987666665543221 1344678999999999985
No 7
>1uxc_A FRUR (1-57), fructose repressor; DNA-binding protein, LACI family, transc regulation; NMR {Escherichia coli} SCOP: a.35.1.5 PDB: 1uxd_A
Probab=14.91 E-value=1.3e+02 Score=19.79 Aligned_cols=47 Identities=6% Similarity=0.012 Sum_probs=32.1
Q ss_pred cHHHHhhhhcccccchhhcccccCCCCCCCCCCChhHHHHHHHHHhcch
Q 029500 60 SAEEITKKYGLEAGLWQIFRSKEEGNAEGDKKKSRGDQTKELLAKYGGA 108 (192)
Q Consensus 60 ~~~~~~~k~gl~a~~~~~~~sk~~~~~~~~~k~S~~qRlK~L~KkYG~v 108 (192)
+.+|++++.|+.-.--+++-+.....- .-.....+|+.+.+++.|+.
T Consensus 2 T~~diA~~aGVS~sTVSrvLng~~~~~--~vs~et~~rI~~aa~~lgY~ 48 (65)
T 1uxc_A 2 KLDEIARLAGVSRTTASYVINGKAKQY--RVSDKTVEKVMAVVREHNYH 48 (65)
T ss_dssp CHHHHHHHHTSCHHHHHHHHHTCTTTT--TCTTHHHHHHHHHHHHHTCC
T ss_pred CHHHHHHHHCcCHHHHHHHHcCCCCCC--CCCHHHHHHHHHHHHHhCCC
Confidence 467899999998777666655432100 11345778999999999975
No 8
>3fh2_A Probable ATP-dependent protease (heat shock prote; struct genomics, PSI2, MCSG, protein structure initiative; 1.60A {Corynebacterium glutamicum}
Probab=14.46 E-value=2.6e+02 Score=20.33 Aligned_cols=80 Identities=19% Similarity=0.238 Sum_probs=44.7
Q ss_pred cHHHHhhhhcccccchhhc-c---cccCCCCCCCCCCChhHHHHHHH-------HHhcchhhh-hhhhhhhhhhh---hh
Q 029500 60 SAEEITKKYGLEAGLWQIF-R---SKEEGNAEGDKKKSRGDQTKELL-------AKYGGAYLA-TSITLSLISFS---LC 124 (192)
Q Consensus 60 ~~~~~~~k~gl~a~~~~~~-~---sk~~~~~~~~~k~S~~qRlK~L~-------KkYG~vaL~-vyi~lS~isf~---~~ 124 (192)
.+..+.+++|+...-.+.. . .+...... ..+.+..+++.++ +++|..+|. -|+.+.++.-. ..
T Consensus 46 ~~~~iL~~~gv~~~~l~~~l~~~l~~~~~~~~--~~~~~s~~~~~vL~~A~~~a~~~~~~~i~~eHlLlall~~~~~~a~ 123 (146)
T 3fh2_A 46 VAAKALESMGISLDAVRQEVEEIIGQGSQPTT--GHIPFTPRAKKVLELSLREGLQMGHKYIGTEFLLLGLIREGEGVAA 123 (146)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHHCCCSCCCC--SCCCBCHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHHCSSHHH
T ss_pred hHHHHHHHcCCCHHHHHHHHHHHhccCCCCCc--CCCcCCHHHHHHHHHHHHHHHHcCCCcCcHHHHHHHHHhCCCcHHH
Confidence 4566777777765444321 1 11111111 1244555555544 578877765 47878877543 45
Q ss_pred HHHHHcCCCHHHHHHHh
Q 029500 125 YVLIAAGVDVQALLQKV 141 (192)
Q Consensus 125 Y~aV~sGVDV~~lL~~v 141 (192)
+++-+.|||...+.+.+
T Consensus 124 ~iL~~~gv~~~~l~~~l 140 (146)
T 3fh2_A 124 QVLVKLGADLPRVRQQV 140 (146)
T ss_dssp HHHHHHTCCHHHHHHHH
T ss_pred HHHHHcCCCHHHHHHHH
Confidence 66667799887766543
No 9
>3fes_A ATP-dependent CLP endopeptidase; alpha-helical bundles, structural genomics, PSI-2, protein S initiative; HET: PG4 EPE; 1.82A {Clostridium difficile}
Probab=13.99 E-value=2.2e+02 Score=20.71 Aligned_cols=79 Identities=22% Similarity=0.228 Sum_probs=45.7
Q ss_pred cHHHHhhhhcccccchhhc-c---cccCCCCCCCCCCChhHHHHHH-------HHHhcchhhh-hhhhhhhhhhh---hh
Q 029500 60 SAEEITKKYGLEAGLWQIF-R---SKEEGNAEGDKKKSRGDQTKEL-------LAKYGGAYLA-TSITLSLISFS---LC 124 (192)
Q Consensus 60 ~~~~~~~k~gl~a~~~~~~-~---sk~~~~~~~~~k~S~~qRlK~L-------~KkYG~vaL~-vyi~lS~isf~---~~ 124 (192)
.+..+.+++|+.....+.. . .+... . + ..+.+..+++.+ .+++|..+|. -|+.+.++.-. ..
T Consensus 47 ~~~~iL~~~gvd~~~l~~~l~~~l~~~~~-~-~-~~~~~s~~~~~vl~~A~~~A~~~~~~~v~~eHlLlAll~~~~~~a~ 123 (145)
T 3fes_A 47 IAAKVLSKVGFTEAYLEGKIVDMEGKGEE-I-S-EDIVLSPRSKQILELSGMFANKLKTNYIGTEHILLAIIQEGEGIAN 123 (145)
T ss_dssp HHHHHHHHHTCCHHHHHHHHHHHHCCCSC-C-C-SCCEECHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHHCCHHHH
T ss_pred hHHHHHHHcCCCHHHHHHHHHHHHhcCCC-C-C-CCCCCCHHHHHHHHHHHHHHHHcCCCcccHHHHHHHHHhCCCcHHH
Confidence 4567777888765544321 1 11111 1 1 123445555554 4678877764 48888887654 34
Q ss_pred HHHHHcCCCHHHHHHHh
Q 029500 125 YVLIAAGVDVQALLQKV 141 (192)
Q Consensus 125 Y~aV~sGVDV~~lL~~v 141 (192)
+++-+.|||...+.+.+
T Consensus 124 ~iL~~~gv~~~~l~~~i 140 (145)
T 3fes_A 124 KILNYAGVNDRTLAQLT 140 (145)
T ss_dssp HHHHHHTCHHHHHHHHH
T ss_pred HHHHHcCCCHHHHHHHH
Confidence 56667799987776543
No 10
>4aj5_1 SKA3, spindle and kinetochore-associated protein 3; cell cycle, SKA complex, mitosis, cell division, kinetochore microtubule attachment; 3.32A {Homo sapiens}
Probab=12.23 E-value=82 Score=23.76 Aligned_cols=12 Identities=33% Similarity=0.531 Sum_probs=9.3
Q ss_pred hHHHHHHHHHhc
Q 029500 95 GDQTKELLAKYG 106 (192)
Q Consensus 95 ~qRlK~L~KkYG 106 (192)
-+++|++|.+||
T Consensus 90 I~~ire~fqKYG 101 (101)
T 4aj5_1 90 IMKIREYFQKYG 101 (101)
T ss_dssp HHHHHHHHHHC-
T ss_pred HHHHHHHHHHcC
Confidence 467999999998
Done!