Query 029500
Match_columns 192
No_of_seqs 134 out of 282
Neff 4.1
Searched_HMMs 13730
Date Mon Mar 25 22:57:56 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029500.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/029500hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1zq1c1 a.182.1.2 (C:457-512) 37.2 17 0.0012 22.4 3.5 43 95-137 4-46 (56)
2 d1uxda_ a.35.1.5 (A:) Fructose 34.6 20 0.0015 22.3 3.6 47 60-108 2-48 (59)
3 d2oa4a1 a.4.12.3 (A:1-93) Unch 33.8 6.7 0.00049 27.5 1.2 43 58-100 50-92 (93)
4 d1efaa1 a.35.1.5 (A:2-60) Lac 30.6 25 0.0018 22.1 3.5 45 59-108 3-47 (59)
5 d2d6fc1 a.182.1.2 (C:445-503) 28.7 15 0.0011 22.9 2.1 45 95-139 4-48 (59)
6 d1khya_ a.174.1.1 (A:) N-termi 24.6 57 0.0041 21.6 4.9 46 96-141 89-137 (139)
7 d1qpza1 a.35.1.5 (A:2-58) Puri 22.7 27 0.002 21.7 2.6 44 60-108 2-45 (57)
8 d2hsga1 a.35.1.5 (A:2-58) Gluc 22.5 31 0.0023 21.3 2.9 44 60-108 3-46 (57)
9 d2jn6a1 a.4.1.19 (A:1-89) Unch 19.8 56 0.004 20.9 3.9 40 37-81 7-46 (89)
10 d1hl9a2 c.1.8.11 (A:7-356) Put 16.2 30 0.0022 28.0 2.1 53 59-111 149-216 (350)
No 1
>d1zq1c1 a.182.1.2 (C:457-512) Glutamyl-tRNA(Gln) amidotransferase subunit E, GatE, C-terminal domain {Pyrococcus abyssi [TaxId: 29292]}
Probab=37.23 E-value=17 Score=22.39 Aligned_cols=43 Identities=12% Similarity=0.033 Sum_probs=29.3
Q ss_pred hHHHHHHHHHhcchhhhhhhhhhhhhhhhhHHHHHcCCCHHHH
Q 029500 95 GDQTKELLAKYGGAYLATSITLSLISFSLCYVLIAAGVDVQAL 137 (192)
Q Consensus 95 ~qRlK~L~KkYG~vaL~vyi~lS~isf~~~Y~aV~sGVDV~~l 137 (192)
.+|.+.++++||-.-=-.-+..+=..+..|+-+|..|+|..-.
T Consensus 4 ~~k~~Ry~~eygLs~~dA~~l~~~~~~~~Fee~v~~~~~pkla 46 (56)
T d1zq1c1 4 QAKVERYVKEYKLDRSLAQTLVDDERDELFEELVSMGVKPSLA 46 (56)
T ss_dssp HHHHHHHHTTTCCCHHHHHHHHHTSTHHHHHHHHHTTCSTTHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHCChHHHHHHHHHHcCCCHHHH
Confidence 4789999999996553333334444567778888888885433
No 2
>d1uxda_ a.35.1.5 (A:) Fructose repressor (FruR), N-terminal domain {Escherichia coli [TaxId: 562]}
Probab=34.57 E-value=20 Score=22.34 Aligned_cols=47 Identities=6% Similarity=0.017 Sum_probs=33.9
Q ss_pred cHHHHhhhhcccccchhhcccccCCCCCCCCCCChhHHHHHHHHHhcch
Q 029500 60 SAEEITKKYGLEAGLWQIFRSKEEGNAEGDKKKSRGDQTKELLAKYGGA 108 (192)
Q Consensus 60 ~~~~~~~k~gl~a~~~~~~~sk~~~~~~~~~k~S~~qRlK~L~KkYG~v 108 (192)
+.++|++..|+...-=++.-+...+... =.....+|+.+..+++|+.
T Consensus 2 Tl~diA~~agvS~sTVSrvLn~~~~~~~--vs~~tr~rV~~~a~~lgY~ 48 (59)
T d1uxda_ 2 KLDEIARLAGVSRTTASYVINGKAKQYR--VSDKTVEKVMAVVREHNYH 48 (59)
T ss_dssp CHHHHHHHHTSCTTHHHHHHHTCGGGTT--CTTTTHHHHHHHHHHHTCC
T ss_pred CHHHHHHHHCcCHHHHHHHHcCCCCcCc--CCHHHHHHHHHHHHHHCCC
Confidence 4688999999998888776654322110 1345789999999999985
No 3
>d2oa4a1 a.4.12.3 (A:1-93) Uncharacterized protein SPO1678 {Silicibacter pomeroyi [TaxId: 89184]}
Probab=33.77 E-value=6.7 Score=27.50 Aligned_cols=43 Identities=14% Similarity=0.173 Sum_probs=32.5
Q ss_pred cccHHHHhhhhcccccchhhcccccCCCCCCCCCCChhHHHHH
Q 029500 58 SASAEEITKKYGLEAGLWQIFRSKEEGNAEGDKKKSRGDQTKE 100 (192)
Q Consensus 58 ~~~~~~~~~k~gl~a~~~~~~~sk~~~~~~~~~k~S~~qRlK~ 100 (192)
..+.+|+.++|||....|-.|...-...++..=+.+.-|+.++
T Consensus 50 l~S~~EAcrrY~LS~eEf~~W~~a~~~hGe~aLr~t~~q~yr~ 92 (93)
T d2oa4a1 50 LITLAEAKQTYGLSDEEFNSWVSALAEHGKDALKVTALKKYRQ 92 (93)
T ss_dssp TCCHHHHHHTTCSSHHHHHHHHHHHHCCCSSSSCCHHHHHHHH
T ss_pred cCCHHHHHHHhCCCHHHHHHHHHHHHHHhHHHHHHHHHHHHhc
Confidence 4789999999999999999999886655544445555565554
No 4
>d1efaa1 a.35.1.5 (A:2-60) Lac repressor (LacR), N-terminal domain {Escherichia coli [TaxId: 562]}
Probab=30.60 E-value=25 Score=22.08 Aligned_cols=45 Identities=4% Similarity=0.019 Sum_probs=35.2
Q ss_pred ccHHHHhhhhcccccchhhcccccCCCCCCCCCCChhHHHHHHHHHhcch
Q 029500 59 ASAEEITKKYGLEAGLWQIFRSKEEGNAEGDKKKSRGDQTKELLAKYGGA 108 (192)
Q Consensus 59 ~~~~~~~~k~gl~a~~~~~~~sk~~~~~~~~~k~S~~qRlK~L~KkYG~v 108 (192)
.+..+|+++.|+.-.-=++.-+....- .....+|+.+..+++|+.
T Consensus 3 ~Ti~diA~~agvS~sTVSr~l~~~~~v-----s~~tr~rI~~~a~~lgY~ 47 (59)
T d1efaa1 3 VTLYDVAEYAGVSYQTVSRVVNQASHV-----SAKTREKVEAAMAELNYI 47 (59)
T ss_dssp CCHHHHHHTTTSCHHHHHHHHTTCSSC-----CTHHHHHHHHHHHHHTCC
T ss_pred CCHHHHHHHHCCCHHHHHHHHCCCCcC-----CHHHHHHHHHHHHHHCCC
Confidence 578899999999988887766544321 345889999999999986
No 5
>d2d6fc1 a.182.1.2 (C:445-503) Glutamyl-tRNA(Gln) amidotransferase subunit E, GatE, C-terminal domain {Methanobacterium thermoautotrophicum [TaxId: 145262]}
Probab=28.73 E-value=15 Score=22.87 Aligned_cols=45 Identities=13% Similarity=0.105 Sum_probs=23.9
Q ss_pred hHHHHHHHHHhcchhhhhhhhhhhhhhhhhHHHHHcCCCHHHHHH
Q 029500 95 GDQTKELLAKYGGAYLATSITLSLISFSLCYVLIAAGVDVQALLQ 139 (192)
Q Consensus 95 ~qRlK~L~KkYG~vaL~vyi~lS~isf~~~Y~aV~sGVDV~~lL~ 139 (192)
.+|.+.++++||-..=-..++++=-.+-.|+-+|..|+|..-+-.
T Consensus 4 ~~k~~R~~~eygLs~~dA~~L~~~~~~~~FEe~v~~~~~pk~~An 48 (59)
T d2d6fc1 4 SEKKERIMRDYGLSEDLASQLVKRNLVDEFEALTEFRVDTTVIAS 48 (59)
T ss_dssp HHHHHHHHHTTCCCHHHHHHHHHTTCTTTC--------CCHHHHH
T ss_pred HHHHHHHHHHcCcCHHHHHHHHcCchHHHHHHHHHhCCCHHHHHH
Confidence 478999999999766444444444456677788888888654433
No 6
>d1khya_ a.174.1.1 (A:) N-terminal domain of ClpB (heat shock protein F84.1) {Escherichia coli [TaxId: 562]}
Probab=24.62 E-value=57 Score=21.63 Aligned_cols=46 Identities=22% Similarity=0.365 Sum_probs=32.8
Q ss_pred HHHHHHHHHhcchhh-hhhhhhhhhhh--hhhHHHHHcCCCHHHHHHHh
Q 029500 96 DQTKELLAKYGGAYL-ATSITLSLISF--SLCYVLIAAGVDVQALLQKV 141 (192)
Q Consensus 96 qRlK~L~KkYG~vaL-~vyi~lS~isf--~~~Y~aV~sGVDV~~lL~~v 141 (192)
++.....+++|..+| +-|+.++++.= .+.+++-+.|+|...+.+.+
T Consensus 89 ~~A~~~a~~~~d~~I~~ehlLlall~~~~~~~~~L~~~gi~~~~l~~~i 137 (139)
T d1khya_ 89 NLCDKLAQKRGDNFISSELFVLAALESRGTLADILKAAGATTANITQAI 137 (139)
T ss_dssp HHHHHHHHHHTCSSBCHHHHHHHHHTSCHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHcCCCeecHHHHHHHHHcCCcHHHHHHHHcCCCHHHHHHHh
Confidence 555666778998888 45888888743 24566777899988877654
No 7
>d1qpza1 a.35.1.5 (A:2-58) Purine repressor (PurR), N-terminal domain {Escherichia coli [TaxId: 562]}
Probab=22.75 E-value=27 Score=21.66 Aligned_cols=44 Identities=5% Similarity=-0.004 Sum_probs=33.1
Q ss_pred cHHHHhhhhcccccchhhcccccCCCCCCCCCCChhHHHHHHHHHhcch
Q 029500 60 SAEEITKKYGLEAGLWQIFRSKEEGNAEGDKKKSRGDQTKELLAKYGGA 108 (192)
Q Consensus 60 ~~~~~~~k~gl~a~~~~~~~sk~~~~~~~~~k~S~~qRlK~L~KkYG~v 108 (192)
..++|++..|+...-=++.-+....- +....+|+.+..++.|+.
T Consensus 2 Ti~dvA~~agVS~sTVSr~ln~~~~v-----s~~tr~rV~~~a~~lgY~ 45 (57)
T d1qpza1 2 TIKDVAKRANVSTTTVSHVINKTRFV-----AEETRNAVWAAIKELHYS 45 (57)
T ss_dssp CHHHHHHHHTSCHHHHHHHHHTCSCC-----CHHHHHHHHHHHHHHTCC
T ss_pred CHHHHHHHHCcCHHHHHHHHCCCCcc-----CHHHHHHHHHHHHHHCCC
Confidence 46789999999888777766543221 345789999999999975
No 8
>d2hsga1 a.35.1.5 (A:2-58) Glucose-resistance amylase regulator CcpA, N-terminal domain {Bacillus megaterium [TaxId: 1404]}
Probab=22.52 E-value=31 Score=21.32 Aligned_cols=44 Identities=9% Similarity=0.093 Sum_probs=32.9
Q ss_pred cHHHHhhhhcccccchhhcccccCCCCCCCCCCChhHHHHHHHHHhcch
Q 029500 60 SAEEITKKYGLEAGLWQIFRSKEEGNAEGDKKKSRGDQTKELLAKYGGA 108 (192)
Q Consensus 60 ~~~~~~~k~gl~a~~~~~~~sk~~~~~~~~~k~S~~qRlK~L~KkYG~v 108 (192)
..++|+++.|+...-=++.-+....- +....+|+.+..++.||.
T Consensus 3 Ti~dvA~~agvS~~TVSr~Ln~~~~V-----s~~tr~rV~~aa~~lgY~ 46 (57)
T d2hsga1 3 TIYDVAREASVSMATVSRVVNGNPNV-----KPSTRKKVLETIERLGYR 46 (57)
T ss_dssp CHHHHHHHTTSCHHHHHHHHTTCTTS-----CHHHHHHHHHHHHHHTCC
T ss_pred CHHHHHHHHCcCHHHHHHHhCCCCcC-----CHHHHHHHHHHHHHHCcC
Confidence 56889999999887777755543221 344789999999999985
No 9
>d2jn6a1 a.4.1.19 (A:1-89) Uncharacterized protein Cgl2762 {Corynebacterium glutamicum [TaxId: 1718]}
Probab=19.83 E-value=56 Score=20.91 Aligned_cols=40 Identities=18% Similarity=0.153 Sum_probs=28.4
Q ss_pred cccchhhhhhhhhhhccCCCccccHHHHhhhhcccccchhhcccc
Q 029500 37 WKSCKVRAIKEETEEKTSSSASASAEEITKKYGLEAGLWQIFRSK 81 (192)
Q Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~gl~a~~~~~~~sk 81 (192)
..-|+..+|+...+.. ..+..+|++++|+..+....|..+
T Consensus 7 s~EfK~~aV~l~~~~~-----g~s~~~vA~~lGIs~~tl~~W~k~ 46 (89)
T d2jn6a1 7 SEEFKRDAVALYENSD-----GASLQQIANDLGINRVTLKNWIIK 46 (89)
T ss_dssp CHHHHHHHHHHHTTGG-----GSCHHHHHHHHTSCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcC-----CCcHHHHHHHHCCCHHHHHHHHHH
Confidence 4457777776654322 367889999999998887777655
No 10
>d1hl9a2 c.1.8.11 (A:7-356) Putative alpha-L-fucosidase, catalytic domain {Thermotoga maritima [TaxId: 2336]}
Probab=16.24 E-value=30 Score=27.96 Aligned_cols=53 Identities=19% Similarity=0.133 Sum_probs=31.3
Q ss_pred ccHHHHhhhhcccccch-hh---cccccCCCCCC-----CCCC------ChhHHHHHHHHHhcchhhh
Q 029500 59 ASAEEITKKYGLEAGLW-QI---FRSKEEGNAEG-----DKKK------SRGDQTKELLAKYGGAYLA 111 (192)
Q Consensus 59 ~~~~~~~~k~gl~a~~~-~~---~~sk~~~~~~~-----~~k~------S~~qRlK~L~KkYG~vaL~ 111 (192)
.+..+.++|+||..|+| +. +.........+ .... -...++++|+.+||...+.
T Consensus 149 ~el~~A~rk~Glk~G~YyS~~~dw~~~~~~~~~~~~~~~~~~~~~~y~~~~~~Ql~EL~~~Y~p~~~w 216 (350)
T d1hl9a2 149 GDLAKAVREAGLRFGVYYSGGLDWRFTTEPIRYPEDLSYIRPNTYEYADYAYKQVMELVDLYLPDVLW 216 (350)
T ss_dssp HHHHHHHHHTTCEECEEECCSCCTTSCCSCCCSGGGGGTCSCCSHHHHHHHHHHHHHHHHHHCCSCEE
T ss_pred HHHHHHHHhcCCceeEEeccccccccccCCCCCcchhcccCccchHHHHHHHHHHHHHHhccCCceEE
Confidence 56778899999999997 42 22111110000 0011 1337899999999976543
Done!