Query 029501
Match_columns 192
No_of_seqs 112 out of 213
Neff 3.6
Searched_HMMs 46136
Date Fri Mar 29 13:55:21 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029501.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/029501hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2729 ER vesicle integral me 100.0 5E-51 1.1E-55 328.4 10.0 109 1-109 29-137 (137)
2 PLN00174 predicted protein; Pr 100.0 2E-46 4.4E-51 308.0 10.8 109 3-111 36-145 (160)
3 PF03311 Cornichon: Cornichon 100.0 8E-44 1.7E-48 281.2 8.6 101 1-101 28-128 (128)
4 TIGR00945 tatC Twin arginine t 75.9 8 0.00017 32.9 5.8 28 40-68 62-89 (215)
5 COG0805 TatC Sec-independent p 61.5 21 0.00046 31.9 5.6 27 41-68 77-103 (255)
6 PRK10921 twin-arginine protein 61.4 29 0.00062 30.6 6.4 28 40-68 73-100 (258)
7 PF00902 TatC: Sec-independent 52.4 64 0.0014 27.1 6.8 26 39-64 65-90 (215)
8 CHL00182 tatC Sec-independent 47.3 77 0.0017 27.9 6.7 28 40-68 83-110 (249)
9 TIGR01912 TatC-Arch Twin argin 46.2 85 0.0018 27.3 6.8 28 40-68 70-97 (237)
10 PF07584 BatA: Aerotolerance r 45.6 84 0.0018 22.3 5.7 53 41-93 6-65 (77)
11 cd07153 Fur_like Ferric uptake 34.9 13 0.00029 27.4 0.1 38 50-87 14-52 (116)
12 PF00873 ACR_tran: AcrB/AcrD/A 24.4 3.8E+02 0.0082 27.6 8.3 74 27-100 458-543 (1021)
13 PF01475 FUR: Ferric uptake re 22.0 21 0.00045 26.8 -0.9 35 52-86 23-58 (120)
14 PRK09462 fur ferric uptake reg 21.7 32 0.0007 27.1 0.1 37 51-87 32-69 (148)
15 PRK10299 PhoPQ regulatory prot 21.5 1.2E+02 0.0026 21.1 2.9 41 81-122 2-42 (47)
16 PF07895 DUF1673: Protein of u 20.2 3.1E+02 0.0068 23.4 5.8 21 44-64 86-106 (205)
No 1
>KOG2729 consensus ER vesicle integral membrane protein involved in establishing cell polarity, signaling and protein degradation [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport; Signal transduction mechanisms]
Probab=100.00 E-value=5e-51 Score=328.42 Aligned_cols=109 Identities=47% Similarity=0.869 Sum_probs=107.5
Q ss_pred CcccccccccCChHHHhhcCCcchhhHHHHHHHHHHHHHhhhHHHHHHhhhhHHHHHhhhhhcCCCccchhhhhhhHHHH
Q 029501 1 MYLTDLEGDYINPYDSAAQINMLVFPEFFTQGTLCILFLITEHWFMFLLSLPYLYFNVRLYTRRQHLVDVTEIYSQLTWE 80 (192)
Q Consensus 1 I~LsDLE~DyiNPiDlc~rLN~LVlPE~i~H~~L~lLfLLtG~W~~~LLNlPll~Yhi~~y~~r~hLyDpTeIfnqL~~~ 80 (192)
||++|||+||+||+|+|||+|++|+||++.||++|++++++|||+++++|+|+++||+|+|++|+|++|||||||+|++|
T Consensus 29 I~~~DLe~DyiNPid~c~rlN~lVlPE~ilh~~KOGlfLl~g~W~~fllnlP~l~y~~~~y~~r~~l~D~TeI~n~L~~~ 108 (137)
T KOG2729|consen 29 ICLADLETDYINPIDLCSRLNRLVLPEFILHGLLCLLFLLTGHWFMFLLNLPLLAYNAWLYMKRPHLYDPTEIFNTLSSE 108 (137)
T ss_pred HHHHHHhhccCCHHHHHHHHhHHHhhHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHcCCcccCHHHHHHHhHHH
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 029501 81 KHLRLYKLCYLIILLVLCIFWYCGSRCFD 109 (192)
Q Consensus 81 kKe~~iKLaFYLl~FF~yLY~mI~sLv~d 109 (192)
|||||+|+|||+++||+|+||||+|++++
T Consensus 109 ~k~~~~KL~fyll~FF~yly~mI~slv~~ 137 (137)
T KOG2729|consen 109 KKERWIKLAFYLLSFFYYLYWMIYSLVSS 137 (137)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 99999999999999999999999999975
No 2
>PLN00174 predicted protein; Provisional
Probab=100.00 E-value=2e-46 Score=307.96 Aligned_cols=109 Identities=26% Similarity=0.520 Sum_probs=105.6
Q ss_pred ccccccccCChHHHhhcCCcchhhHHHHHHHHHHHHHhhhHHHHHHhhhhHHHHHhhhhhcCCCccchhhhhhhHHHHHH
Q 029501 3 LTDLEGDYINPYDSAAQINMLVFPEFFTQGTLCILFLITEHWFMFLLSLPYLYFNVRLYTRRQHLVDVTEIYSQLTWEKH 82 (192)
Q Consensus 3 LsDLE~DyiNPiDlc~rLN~LVlPE~i~H~~L~lLfLLtG~W~~~LLNlPll~Yhi~~y~~r~hLyDpTeIfnqL~~~kK 82 (192)
+||||+||+||+|+|+|+|++|+||+++|+++|++++++|+|+++++|+|+++||+++|.+|+|++|||||||+|++|||
T Consensus 36 lsDLE~DYiNPiD~CnrLN~lVlPEyiiH~~l~lLfLltG~W~~fLLNlPll~Yhv~~y~~r~hL~D~TeIfn~L~~~kK 115 (160)
T PLN00174 36 LQDLSTDTVNPVEVCDKVNQLKVPEYLAHLFLSIAFVIRGWWIVGFLNFPFIFYNFAQWYEGKHQLDSAQIFNVLSRELR 115 (160)
T ss_pred HHHhhhccCCHHHHHHHhhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHH
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHH-HHHHHhhccCC
Q 029501 83 LRLYKLCYLIILLVLCIF-WYCGSRCFDTL 111 (192)
Q Consensus 83 e~~iKLaFYLl~FF~yLY-~mI~sLv~d~~ 111 (192)
+||+|+|||+++||+|+| |||++.=+..+
T Consensus 116 e~~iKLaFYLl~FF~~ly~~mI~~~~~~~~ 145 (160)
T PLN00174 116 VIKAKSAFFIIIVIYTIWEWMIWVPPDYVS 145 (160)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCCCccc
Confidence 999999999999999999 99998755444
No 3
>PF03311 Cornichon: Cornichon protein; InterPro: IPR003377 The drosophila cornichon protein (gene: cni) [] is required in the germline for dorsal-ventral signalling. The dorsal-ventral pattern formation involves a reorganisation of the microtubule network correlated with the movement of the oocyte nucleus, and depending on the initial correct establishment of the anterior-posterior axis via a signal from the oocyte produced by cornichon and gurken and received by torpedo protein in the follicle cells. The biochemical function of the cornichon protein is currently not known. It is a protein of 144 residues that seems to contain three transmembrane regions. ; GO: 0035556 intracellular signal transduction, 0016020 membrane
Probab=100.00 E-value=8e-44 Score=281.15 Aligned_cols=101 Identities=48% Similarity=0.902 Sum_probs=99.7
Q ss_pred CcccccccccCChHHHhhcCCcchhhHHHHHHHHHHHHHhhhHHHHHHhhhhHHHHHhhhhhcCCCccchhhhhhhHHHH
Q 029501 1 MYLTDLEGDYINPYDSAAQINMLVFPEFFTQGTLCILFLITEHWFMFLLSLPYLYFNVRLYTRRQHLVDVTEIYSQLTWE 80 (192)
Q Consensus 1 I~LsDLE~DyiNPiDlc~rLN~LVlPE~i~H~~L~lLfLLtG~W~~~LLNlPll~Yhi~~y~~r~hLyDpTeIfnqL~~~ 80 (192)
|++||||+||+||+|+|+|+||+|+||+++|+++|++++++|||+++++|+|+++||+++|.+|+|++|||||||+|+++
T Consensus 28 i~l~DLe~D~iNp~d~c~~lN~lv~pE~~~h~~l~~l~ll~g~w~~~llnlPl~~y~~~~~~~~~~l~D~T~If~~L~~~ 107 (128)
T PF03311_consen 28 ICLSDLECDYINPIDLCSRLNPLVLPEYIIHGFLCLLFLLTGHWFLFLLNLPLLAYHIYRYFRRQHLYDPTEIFNQLKRE 107 (128)
T ss_pred HHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccccHHHHHHHHHHH
Confidence 57999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 029501 81 KHLRLYKLCYLIILLVLCIFW 101 (192)
Q Consensus 81 kKe~~iKLaFYLl~FF~yLY~ 101 (192)
||+|++|+|||+++||+|+||
T Consensus 108 kk~~~iKl~~yll~ff~yly~ 128 (128)
T PF03311_consen 108 KKESFIKLGFYLLLFFYYLYR 128 (128)
T ss_pred HHHHHHHHHHHHHHHHHHHhC
Confidence 999999999999999999996
No 4
>TIGR00945 tatC Twin arginine targeting (Tat) protein translocase TatC. This model represents the TatC translocase component of the Sec-independent protein translocation system. This system is responsible for translocation of folded proteins, often with bound cofactors across the periplasmic membrane. A related model (TIGR01912) represents the archaeal clade of this family. TatC is often found in a gene cluster with the two other components of the system, TatA/E (TIGR01411) and TatB (TIGR01410). A model also exists for the Twin-arginine signal sequence (TIGR01409).
Probab=75.91 E-value=8 Score=32.87 Aligned_cols=28 Identities=14% Similarity=0.199 Sum_probs=22.5
Q ss_pred hhhHHHHHHhhhhHHHHHhhhhhcCCCcc
Q 029501 40 ITEHWFMFLLSLPYLYFNVRLYTRRQHLV 68 (192)
Q Consensus 40 LtG~W~~~LLNlPll~Yhi~~y~~r~hLy 68 (192)
-..-+..+.++.|...|++|++.+ +|++
T Consensus 62 k~s~~~g~~~~~P~i~yqiw~Fi~-PgLy 89 (215)
T TIGR00945 62 KLSLIVGIILSSPVILYQIWAFIL-PGLY 89 (215)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhc-cccc
Confidence 345567889999999999999988 4554
No 5
>COG0805 TatC Sec-independent protein secretion pathway component TatC [Intracellular trafficking and secretion]
Probab=61.54 E-value=21 Score=31.92 Aligned_cols=27 Identities=19% Similarity=0.351 Sum_probs=22.9
Q ss_pred hhHHHHHHhhhhHHHHHhhhhhcCCCcc
Q 029501 41 TEHWFMFLLSLPYLYFNVRLYTRRQHLV 68 (192)
Q Consensus 41 tG~W~~~LLNlPll~Yhi~~y~~r~hLy 68 (192)
..-+...++..|.++|.+|++.+. |+|
T Consensus 77 ~a~~~gl~~a~P~i~yq~w~FiaP-GLy 103 (255)
T COG0805 77 LALFAGLLLALPVILYQLWAFIAP-GLY 103 (255)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCC-ccc
Confidence 445678899999999999999987 776
No 6
>PRK10921 twin-arginine protein translocation system subunit TatC; Provisional
Probab=61.38 E-value=29 Score=30.63 Aligned_cols=28 Identities=18% Similarity=0.304 Sum_probs=22.6
Q ss_pred hhhHHHHHHhhhhHHHHHhhhhhcCCCcc
Q 029501 40 ITEHWFMFLLSLPYLYFNVRLYTRRQHLV 68 (192)
Q Consensus 40 LtG~W~~~LLNlPll~Yhi~~y~~r~hLy 68 (192)
-..-+....+..|...|.+|++.. +|++
T Consensus 73 k~sl~~g~~la~P~ilyqiw~Fi~-PgLy 100 (258)
T PRK10921 73 KLTFMVSLILSAPVILYQVWAFIA-PALY 100 (258)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh-ccCC
Confidence 344667889999999999999987 4555
No 7
>PF00902 TatC: Sec-independent protein translocase protein (TatC); InterPro: IPR002033 Proteins encoded by the mttABC operon (formerly yigTUW), mediate a novel Sec-independent membrane targeting and translocation system in Escherichia coli that interacts with cofactor-containing redox proteins having a S/TRRXFLK "twin arginine" leader motif. This family contains the E. coli mttB gene (TATC) []. A functional Tat system or Delta pH-dependent pathway requires three integral membrane proteins: TatA/Tha4, TatB/Hcf106 and TatC/cpTatC. The TatC protein is essential for the function of both pathways. It might be involved in twin-arginine signal peptide recognition, protein translocation and proton translocation. Sequence analysis predicts that TatC contains six transmembrane helices (TMHs), and experimental data confirmed that N and C termini of TatC or cpTatC are exposed to the cytoplasmic or stromal face of the membrane. The cytoplasmic N terminus and the first cytoplasmic loop region of the E. coli TatC protein are essential for protein export. At least two TatC molecules co-exist within each Tat translocon [, ].
Probab=52.41 E-value=64 Score=27.09 Aligned_cols=26 Identities=19% Similarity=0.563 Sum_probs=22.4
Q ss_pred HhhhHHHHHHhhhhHHHHHhhhhhcC
Q 029501 39 LITEHWFMFLLSLPYLYFNVRLYTRR 64 (192)
Q Consensus 39 LLtG~W~~~LLNlPll~Yhi~~y~~r 64 (192)
+-..-|+...++.|...|++|++.+.
T Consensus 65 lk~s~~~~~~~~~P~~~yq~w~Fi~P 90 (215)
T PF00902_consen 65 LKLSFFLGLIISLPYILYQIWAFIAP 90 (215)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 44566788999999999999999876
No 8
>CHL00182 tatC Sec-independent translocase component C; Provisional
Probab=47.33 E-value=77 Score=27.89 Aligned_cols=28 Identities=18% Similarity=0.406 Sum_probs=21.4
Q ss_pred hhhHHHHHHhhhhHHHHHhhhhhcCCCcc
Q 029501 40 ITEHWFMFLLSLPYLYFNVRLYTRRQHLV 68 (192)
Q Consensus 40 LtG~W~~~LLNlPll~Yhi~~y~~r~hLy 68 (192)
-..-+..+.+..|...|++|++.+. |++
T Consensus 83 kls~~~g~~~a~P~i~yqiw~Fi~P-gLy 110 (249)
T CHL00182 83 KISFYTGLLISSPFIIYQIILFILP-GLT 110 (249)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhc-ccC
Confidence 3455678888999999999998874 443
No 9
>TIGR01912 TatC-Arch Twin arginine targeting (Tat) protein translocase TatC, Archaeal clade. This model represents the TatC translocase component of the Sec-independent protein translocation system. This system is responsible for translocation of folded proteins, often with bound cofactors across the periplasmic membrane. A related model (TIGR00945) represents the bacterial clade of this family. TatC is often found (in bacteria) in a gene cluster with the two other components of the system, TatA/E (TIGR01411) and TatB (TIGR01410). A model also exists for the Twin-arginine signal sequence (TIGR01409).
Probab=46.25 E-value=85 Score=27.31 Aligned_cols=28 Identities=18% Similarity=0.330 Sum_probs=22.5
Q ss_pred hhhHHHHHHhhhhHHHHHhhhhhcCCCcc
Q 029501 40 ITEHWFMFLLSLPYLYFNVRLYTRRQHLV 68 (192)
Q Consensus 40 LtG~W~~~LLNlPll~Yhi~~y~~r~hLy 68 (192)
-.+-+..+.+..|...|++|++.+. |++
T Consensus 70 k~s~~~g~~~~~P~i~yqiw~Fi~P-gLy 97 (237)
T TIGR01912 70 KSAFFIGLLLASPVLAYEAYRFIKP-ALK 97 (237)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhc-ccc
Confidence 3456788899999999999999874 444
No 10
>PF07584 BatA: Aerotolerance regulator N-terminal; InterPro: IPR024163 The Batl operon appears to be important in pathogenicity and aerotolerance. BatA ensures bacterial survival in the early stages of the infection process, when the infected sites are aerobic, and is produced under conditions of oxidative stress []. Proteins produced by the Batl operon share a highly-conserved sequence at their N terminus and the full length proteins carry multiple membrane-spanning domains []. This entry represents the conserved N-terminal domain, which is also found in some uncharacterised proteins.
Probab=45.59 E-value=84 Score=22.33 Aligned_cols=53 Identities=17% Similarity=0.215 Sum_probs=27.4
Q ss_pred hhHHHHHHhhhhH-HHHHhh-hhhcCCCccchhhhhhhHHHHH-----HHHHHHHHHHHH
Q 029501 41 TEHWFMFLLSLPY-LYFNVR-LYTRRQHLVDVTEIYSQLTWEK-----HLRLYKLCYLII 93 (192)
Q Consensus 41 tG~W~~~LLNlPl-l~Yhi~-~y~~r~hLyDpTeIfnqL~~~k-----Ke~~iKLaFYLl 93 (192)
+.+|+.+++.+|. ++++.. +-.+++..+-.++.+++...+. +.++.++...++
T Consensus 6 ~P~~L~~Llllp~~i~~~~~~~~~~~~~~fs~~~~l~~~~~~~~~~~~~~~~l~l~L~lL 65 (77)
T PF07584_consen 6 NPWYLWLLLLLPLPIIIHYFLRRRRRRVRFSSLRLLKRLPPSRRSWRRLRRHLLLLLRLL 65 (77)
T ss_pred hHHHHHHHHHHHHHHHHHHHhcccCCCcccCCHHHHHHhCcccchhHHHhhhHHHHHHHH
Confidence 3445555556666 444444 4344445666677776554333 335555544443
No 11
>cd07153 Fur_like Ferric uptake regulator(Fur) and related metalloregulatory proteins; typically iron-dependent, DNA-binding repressors and activators. Ferric uptake regulator (Fur) and related metalloregulatory proteins are iron-dependent, DNA-binding repressors and activators mainly involved in iron metabolism. A general model for Fur repression under iron-rich conditions is that activated Fur (a dimer having one Fe2+ coordinated per monomer) binds to specific DNA sequences (Fur boxes) in the promoter region of iron-responsive genes, hindering access of RNA polymerase, and repressing transcription. Positive regulation by Fur can be direct or indirect, as in the Fur repression of an anti-sense regulatory small RNA. Some members sense metal ions other than Fe2+. For example, the zinc uptake regulator (Zur) responds to Zn2+, the manganese uptake regulator (Mur) responds to Mn2+, and the nickel uptake regulator (Nur) responds to Ni2+. Other members sense signals other than metal ions.
Probab=34.94 E-value=13 Score=27.40 Aligned_cols=38 Identities=11% Similarity=0.100 Sum_probs=31.4
Q ss_pred hhhHHHHHhhhhhcCCCc-cchhhhhhhHHHHHHHHHHH
Q 029501 50 SLPYLYFNVRLYTRRQHL-VDVTEIYSQLTWEKHLRLYK 87 (192)
Q Consensus 50 NlPll~Yhi~~y~~r~hL-yDpTeIfnqL~~~kKe~~iK 87 (192)
+-|+.+..++.-.++++. ++.++|+|+|+.-...+.++
T Consensus 14 ~~~~sa~ei~~~l~~~~~~i~~~TVYR~L~~L~~~Gli~ 52 (116)
T cd07153 14 DGHLTAEEIYERLRKKGPSISLATVYRTLELLEEAGLVR 52 (116)
T ss_pred CCCCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCEE
Confidence 457888888888877764 89999999999988888766
No 12
>PF00873 ACR_tran: AcrB/AcrD/AcrF family; InterPro: IPR001036 The Escherichia coli acrA and acrB genes encode a multi-drug efflux system that is believed to protect the bacterium against hydrophobic inhibitors []. The E. coli AcrB protein is a transporter that is energized by proton-motive force and that shows the widest substrate specificity among all known multidrug pumps, ranging from most of the currently used antibiotics, disinfectants, dyes, and detergents to simple solvents. The structure of ligand-free AcrB shows that it is a homotrimer of 110kDa per subunit. Each subunit contains 12 transmembrane helices and two large periplasmic domains (each exceeding 300 residues) between helices 1 and 2, and helices 7 and 8. X-ray analysis of the overexpressed AcrB protein demonstrated that the three periplasmic domains form, in the centre, a funnel-like structure and a connected narrow (or closed) pore. The pore is opened to the periplasm through three vestibules located at subunit interfaces. These vestibules were proposed to allow direct access of drugs from the periplasm as well as the outer leaflet of the cytoplasmic membrane. The three transmembrane domains of AcrB protomers form a large, 30A-wide central cavity that spans the cytoplasmic membrane and extends to the cytoplasm X-ray crystallographic structures of the trimeric AcrB pump from E. coli with four structurally diverse ligands demonstrated that three molecules of ligand bind simultaneously to the extremely large central cavity of 5000 cubic angstroms, primarily by hydrophobic, aromatic stacking and van der Waals interactions. Each ligand uses a slightly different subset of AcrB residues for binding. The bound ligand molecules often interact with each other, stabilising the binding. ; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 2V50_B 1T9U_A 2HRT_B 3NOC_A 3NOG_A 4DX7_A 1OYD_A 3AOB_A 1T9V_A 4DX6_B ....
Probab=24.42 E-value=3.8e+02 Score=27.63 Aligned_cols=74 Identities=20% Similarity=0.331 Sum_probs=47.2
Q ss_pred HHHHHHHHHHHHHhhhHHHHHHhhhhHHHHHhhhhhcCCCc------cc-----hhhhhh-hHHHHHHHHHHHHHHHHHH
Q 029501 27 EFFTQGTLCILFLITEHWFMFLLSLPYLYFNVRLYTRRQHL------VD-----VTEIYS-QLTWEKHLRLYKLCYLIIL 94 (192)
Q Consensus 27 E~i~H~~L~lLfLLtG~W~~~LLNlPll~Yhi~~y~~r~hL------yD-----pTeIfn-qL~~~kKe~~iKLaFYLl~ 94 (192)
++.-...+++.+.+...|+..+.-+|.+++++.+-.+++.. .| .+..|+ -|++..|.++.-++..+++
T Consensus 458 ~~~~~l~~~v~~al~~Sllval~~~P~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~Y~~lL~~~L~~~~~~l~i~l~l 537 (1021)
T PF00873_consen 458 QFFRPLALTVIIALIASLLVALTLVPALAALFLKPKKKSSKKRFFSKFDRFFDRLQRGYRRLLRWALRHPKLVLLIALLL 537 (1021)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHCS----TT-CCCHHHHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhccccccccccccccccccccccccchhhhhhhhhhcccchhhhhhhh
Confidence 45556667788889999999999999999887655444322 11 122233 5667777777777777766
Q ss_pred HHHHHH
Q 029501 95 LVLCIF 100 (192)
Q Consensus 95 FF~yLY 100 (192)
++..++
T Consensus 538 ~i~s~~ 543 (1021)
T PF00873_consen 538 LILSLF 543 (1021)
T ss_dssp HHHHHH
T ss_pred hhhhhc
Confidence 666444
No 13
>PF01475 FUR: Ferric uptake regulator family; InterPro: IPR002481 The Ferric uptake regulator (FUR) family includes metal ion uptake regulator proteins. These are responsible for controlling the intracellular concentration of iron in many bacteria. Although iron is essential for most organisms, high concentrations can be toxic because of the formation of hydroxyl radicals []. FURs can also control zinc homeostasis [] and is the subject of research on the pathogenesis of mycobacteria.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1MZB_A 2RGV_B 2FE3_B 3F8N_B 3EYY_B 2W57_A 2FU4_A 2O03_A 3MWM_B 2XIG_B ....
Probab=21.99 E-value=21 Score=26.84 Aligned_cols=35 Identities=11% Similarity=0.111 Sum_probs=24.1
Q ss_pred hHHHHHhhhhhcCCC-ccchhhhhhhHHHHHHHHHH
Q 029501 52 PYLYFNVRLYTRRQH-LVDVTEIYSQLTWEKHLRLY 86 (192)
Q Consensus 52 Pll~Yhi~~y~~r~h-LyDpTeIfnqL~~~kKe~~i 86 (192)
|+.+..++.-.+.++ -++.++|+|.|+.-.+.+.+
T Consensus 23 ~~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~Gli 58 (120)
T PF01475_consen 23 HLTAEEIYDKLRKKGPRISLATVYRTLDLLEEAGLI 58 (120)
T ss_dssp SEEHHHHHHHHHHTTTT--HHHHHHHHHHHHHTTSE
T ss_pred CCCHHHHHHHhhhccCCcCHHHHHHHHHHHHHCCeE
Confidence 677777776666554 57888888888887777654
No 14
>PRK09462 fur ferric uptake regulator; Provisional
Probab=21.70 E-value=32 Score=27.08 Aligned_cols=37 Identities=5% Similarity=-0.088 Sum_probs=29.8
Q ss_pred hhHHHHHhhhhhcCCCc-cchhhhhhhHHHHHHHHHHH
Q 029501 51 LPYLYFNVRLYTRRQHL-VDVTEIYSQLTWEKHLRLYK 87 (192)
Q Consensus 51 lPll~Yhi~~y~~r~hL-yDpTeIfnqL~~~kKe~~iK 87 (192)
-|+.++.++...++++. ++.++|||+|+.....+.++
T Consensus 32 ~h~sa~eI~~~l~~~~~~i~~aTVYR~L~~L~e~Gli~ 69 (148)
T PRK09462 32 HHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAGIVT 69 (148)
T ss_pred CCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCCCEE
Confidence 47888888888877654 88999999998888887764
No 15
>PRK10299 PhoPQ regulatory protein; Provisional
Probab=21.47 E-value=1.2e+02 Score=21.12 Aligned_cols=41 Identities=17% Similarity=0.275 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhccCCccccccceeee
Q 029501 81 KHLRLYKLCYLIILLVLCIFWYCGSRCFDTLHESLFGLCEVT 122 (192)
Q Consensus 81 kKe~~iKLaFYLl~FF~yLY~mI~sLv~d~~~~~~~~~~~~~ 122 (192)
||-||+-+.--++. -..+|-.......|+...=.+|.|..|
T Consensus 2 kk~rwiili~iv~~-Cl~lyl~ald~~CDQg~~F~~GIC~it 42 (47)
T PRK10299 2 KKFRWVVLVVVVLA-CLLLWAQVFNMMCDQDVQFFSGICAIN 42 (47)
T ss_pred ceeeehHHHHHHHH-HHHHHHHHHHHHhcCCccceeeeeeee
Confidence 56667666443333 233677777778888877788999876
No 16
>PF07895 DUF1673: Protein of unknown function (DUF1673); InterPro: IPR012874 This family contains hypothetical proteins of unknown function found in Methanosarcina acetivorans and Methanosarcina mazei.
Probab=20.18 E-value=3.1e+02 Score=23.39 Aligned_cols=21 Identities=24% Similarity=0.170 Sum_probs=12.6
Q ss_pred HHHHHhhhhHHHHHhhhhhcC
Q 029501 44 WFMFLLSLPYLYFNVRLYTRR 64 (192)
Q Consensus 44 W~~~LLNlPll~Yhi~~y~~r 64 (192)
+..++++++...++.+.++++
T Consensus 86 l~g~~~~L~~~i~~wk~~~~~ 106 (205)
T PF07895_consen 86 LAGLILSLYLYIFSWKKQMIR 106 (205)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 445666766666675555544
Done!