Query 029501
Match_columns 192
No_of_seqs 112 out of 213
Neff 3.6
Searched_HMMs 29240
Date Mon Mar 25 22:59:25 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029501.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/029501hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4b4a_A TATC, SEC-independent p 21.3 67 0.0023 27.0 3.3 28 41-69 67-94 (249)
2 3eyy_A Putative iron uptake re 19.2 28 0.00097 26.2 0.4 36 52-87 33-69 (145)
3 1mzb_A Ferric uptake regulatio 17.0 28 0.00097 25.7 -0.0 37 51-87 33-70 (136)
4 3mwm_A ZUR, putative metal upt 14.8 29 0.00099 25.9 -0.5 36 51-86 28-64 (139)
5 2w57_A Ferric uptake regulatio 13.2 32 0.0011 26.1 -0.7 37 51-87 32-69 (150)
6 2fe3_A Peroxide operon regulat 13.0 39 0.0013 25.3 -0.2 37 51-87 36-73 (145)
7 2xig_A Ferric uptake regulatio 11.5 32 0.0011 26.1 -1.1 37 51-87 41-78 (150)
8 3ri2_A Transcriptional regulat 10.8 2.4E+02 0.0082 20.8 3.6 43 45-87 26-69 (123)
9 4ets_A Ferric uptake regulatio 9.7 38 0.0013 26.1 -1.3 36 51-86 47-85 (162)
10 2o03_A Probable zinc uptake re 9.0 42 0.0014 24.6 -1.2 36 51-86 25-61 (131)
No 1
>4b4a_A TATC, SEC-independent protein translocase protein TATC; transport protein, TAT secretion system, protein translocati; HET: LMN; 3.50A {Aquifex aeolicus}
Probab=21.26 E-value=67 Score=26.97 Aligned_cols=28 Identities=11% Similarity=0.243 Sum_probs=20.4
Q ss_pred hhHHHHHHhhhhHHHHHhhhhhcCCCccc
Q 029501 41 TEHWFMFLLSLPYLYFNVRLYTRRQHLVD 69 (192)
Q Consensus 41 tG~W~~~LLNlPll~Yhi~~y~~r~hLyD 69 (192)
..-+..+.++.|...|.+|++.+. |++.
T Consensus 67 vs~~~g~~~a~P~ilyQiw~Fi~P-gLy~ 94 (249)
T 4b4a_A 67 ISLAVGFIIASPVILYQFWRFIEP-ALYS 94 (249)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTT-TTSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhc-cccH
Confidence 344577888899999999988754 5543
No 2
>3eyy_A Putative iron uptake regulatory protein; NUR, nickel-uptake regulator, D-domain, dimerization domain, DB-domain, DNA-binding domain; 2.40A {Streptomyces coelicolor}
Probab=19.17 E-value=28 Score=26.20 Aligned_cols=36 Identities=14% Similarity=0.136 Sum_probs=29.3
Q ss_pred hHHHHHhhhhhcCCC-ccchhhhhhhHHHHHHHHHHH
Q 029501 52 PYLYFNVRLYTRRQH-LVDVTEIYSQLTWEKHLRLYK 87 (192)
Q Consensus 52 Pll~Yhi~~y~~r~h-LyDpTeIfnqL~~~kKe~~iK 87 (192)
|+.++.++.-.++++ -++.++|+|+|+.....+.++
T Consensus 33 h~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~Glv~ 69 (145)
T 3eyy_A 33 HATPDDILGEVRKTASGINISTVYRTLELLEELGLVS 69 (145)
T ss_dssp SBCHHHHHHHHHTTCTTCCHHHHHHHHHHHHHHTSEE
T ss_pred CCCHHHHHHHHHhhCCCCCHhHHHHHHHHHHHCCcEE
Confidence 778888888777765 589999999999888887543
No 3
>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42
Probab=17.04 E-value=28 Score=25.72 Aligned_cols=37 Identities=16% Similarity=-0.052 Sum_probs=29.5
Q ss_pred hhHHHHHhhhhhcCCC-ccchhhhhhhHHHHHHHHHHH
Q 029501 51 LPYLYFNVRLYTRRQH-LVDVTEIYSQLTWEKHLRLYK 87 (192)
Q Consensus 51 lPll~Yhi~~y~~r~h-LyDpTeIfnqL~~~kKe~~iK 87 (192)
-|+.+..++.-.++++ -++.++|+|+|+.-...+.++
T Consensus 33 ~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv~ 70 (136)
T 1mzb_A 33 RHMSAEDVYKALMEAGEDVGLATVYRVLTQFEAAGLVV 70 (136)
T ss_dssp CSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTSEE
T ss_pred CCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCCcEE
Confidence 4788888887776664 589999999999988887653
No 4
>3mwm_A ZUR, putative metal uptake regulation protein; FUR, regulatory metal, graded transcription regulation, transcription; 2.40A {Streptomyces coelicolor}
Probab=14.76 E-value=29 Score=25.95 Aligned_cols=36 Identities=11% Similarity=-0.045 Sum_probs=26.1
Q ss_pred hhHHHHHhhhhhcCCC-ccchhhhhhhHHHHHHHHHH
Q 029501 51 LPYLYFNVRLYTRRQH-LVDVTEIYSQLTWEKHLRLY 86 (192)
Q Consensus 51 lPll~Yhi~~y~~r~h-LyDpTeIfnqL~~~kKe~~i 86 (192)
-|+.+..++.-.++++ -++.++|+|+|+.....+.+
T Consensus 28 ~h~sa~eI~~~l~~~~~~is~aTVYR~L~~L~e~Glv 64 (139)
T 3mwm_A 28 EFRSAQELHDMLKHKGDAVGLTTVYRTLQSLADAGEV 64 (139)
T ss_dssp SCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTSS
T ss_pred CCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCCCE
Confidence 3677788876666554 47888999988887777543
No 5
>2w57_A Ferric uptake regulation protein; gene regulation, transcription regulation, transport, iron, repressor, DNA-binding, transcription; 2.60A {Vibrio cholerae}
Probab=13.19 E-value=32 Score=26.07 Aligned_cols=37 Identities=5% Similarity=-0.102 Sum_probs=29.3
Q ss_pred hhHHHHHhhhhhcCCC-ccchhhhhhhHHHHHHHHHHH
Q 029501 51 LPYLYFNVRLYTRRQH-LVDVTEIYSQLTWEKHLRLYK 87 (192)
Q Consensus 51 lPll~Yhi~~y~~r~h-LyDpTeIfnqL~~~kKe~~iK 87 (192)
-|+.+..++...++++ -++.++|+|+|+.-...+.++
T Consensus 32 ~h~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv~ 69 (150)
T 2w57_A 32 QHISAEELYKKLIDLGEEIGLATVYRVLNQFDDAGIVT 69 (150)
T ss_dssp SSEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTSEE
T ss_pred CCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCCcEE
Confidence 4788888887777664 589999999999888877653
No 6
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=13.02 E-value=39 Score=25.25 Aligned_cols=37 Identities=14% Similarity=0.040 Sum_probs=29.4
Q ss_pred hhHHHHHhhhhhcCCC-ccchhhhhhhHHHHHHHHHHH
Q 029501 51 LPYLYFNVRLYTRRQH-LVDVTEIYSQLTWEKHLRLYK 87 (192)
Q Consensus 51 lPll~Yhi~~y~~r~h-LyDpTeIfnqL~~~kKe~~iK 87 (192)
-|+.+..++...++++ -++.++|+|+|+.-...+.++
T Consensus 36 ~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv~ 73 (145)
T 2fe3_A 36 AHPTADDIYKALEGKFPNMSVATVYNNLRVFRESGLVK 73 (145)
T ss_dssp SCCCHHHHHHHHGGGCTTCCHHHHHHHHHHHHHTTSEE
T ss_pred CCCCHHHHHHHHHHhCCCCChhhHHHHHHHHHHCCCEE
Confidence 4788888888777665 489999999999888876543
No 7
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=11.52 E-value=32 Score=26.06 Aligned_cols=37 Identities=8% Similarity=0.120 Sum_probs=28.5
Q ss_pred hhHHHHHhhhhhcCCC-ccchhhhhhhHHHHHHHHHHH
Q 029501 51 LPYLYFNVRLYTRRQH-LVDVTEIYSQLTWEKHLRLYK 87 (192)
Q Consensus 51 lPll~Yhi~~y~~r~h-LyDpTeIfnqL~~~kKe~~iK 87 (192)
-|+.+..++...++++ -+++++|+|+|+.-...+.++
T Consensus 41 ~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv~ 78 (150)
T 2xig_A 41 THLSPEEITHSIRQKDKNTSISSVYRILNFLEKENFIS 78 (150)
T ss_dssp SCBCHHHHHHHHHHHSTTCCHHHHHHHHHHHHHTTSEE
T ss_pred CCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCcEE
Confidence 4788888887776654 489999999998888776553
No 8
>3ri2_A Transcriptional regulator, PADR-like family; PSI-biology, midwest center for structural genomics, MCSG, transcription regulator; 2.10A {Eggerthella lenta} PDB: 4ejo_A
Probab=10.78 E-value=2.4e+02 Score=20.76 Aligned_cols=43 Identities=9% Similarity=0.094 Sum_probs=31.1
Q ss_pred HHHHhhhhHHHHHhhhhhcCC-CccchhhhhhhHHHHHHHHHHH
Q 029501 45 FMFLLSLPYLYFNVRLYTRRQ-HLVDVTEIYSQLTWEKHLRLYK 87 (192)
Q Consensus 45 ~~~LLNlPll~Yhi~~y~~r~-hLyDpTeIfnqL~~~kKe~~iK 87 (192)
++.+++-|...|.+.+-.+.. .-+++.+|+..|++-.+++++.
T Consensus 26 IL~lL~~p~~GYei~~~l~~~~~~is~gtlY~~L~rLe~~GlI~ 69 (123)
T 3ri2_A 26 VLSQLREPAYGYALVKSLADHGIPIEANTLYPLMRRLESQGLLA 69 (123)
T ss_dssp HHHHTTSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHcCCCCHHHHHHHHHHhCCCCCcchHHHHHHHHHHCCCEE
Confidence 333444688889888777655 3467788999999999887653
No 9
>4ets_A Ferric uptake regulation protein; metal binding protein, transcription factor; 2.10A {Campylobacter jejuni subsp}
Probab=9.68 E-value=38 Score=26.13 Aligned_cols=36 Identities=11% Similarity=0.189 Sum_probs=25.7
Q ss_pred hhHHHHHhhhhhcCC--C-ccchhhhhhhHHHHHHHHHH
Q 029501 51 LPYLYFNVRLYTRRQ--H-LVDVTEIYSQLTWEKHLRLY 86 (192)
Q Consensus 51 lPll~Yhi~~y~~r~--h-LyDpTeIfnqL~~~kKe~~i 86 (192)
-|+.++.++.-.+++ + -++.++|+|+|+.-...+.+
T Consensus 47 ~h~sA~eI~~~l~~~~~~~~is~aTVYRtL~~L~e~Glv 85 (162)
T 4ets_A 47 THYTPESLYMEIKQAEPDLNVGIATVYRTLNLLEEAEMV 85 (162)
T ss_dssp SCBCHHHHHHHHHHHCGGGCCCHHHHHHHHHHHHHTTSE
T ss_pred CCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCCCE
Confidence 467778887666654 3 37888888888877777654
No 10
>2o03_A Probable zinc uptake regulation protein FURB; DNA-binding, helix-turn-helix, zinc binding, GE regulation; 2.70A {Mycobacterium tuberculosis}
Probab=9.03 E-value=42 Score=24.58 Aligned_cols=36 Identities=17% Similarity=0.014 Sum_probs=25.3
Q ss_pred hhHHHHHhhhhhcCCC-ccchhhhhhhHHHHHHHHHH
Q 029501 51 LPYLYFNVRLYTRRQH-LVDVTEIYSQLTWEKHLRLY 86 (192)
Q Consensus 51 lPll~Yhi~~y~~r~h-LyDpTeIfnqL~~~kKe~~i 86 (192)
-|+.+..++.-.++++ -++.++|+|+|+.-...+.+
T Consensus 25 ~~~sa~ei~~~l~~~~~~is~~TVYR~L~~L~e~Glv 61 (131)
T 2o03_A 25 DFRSAQELHDELRRRGENIGLTTVYRTLQSMASSGLV 61 (131)
T ss_dssp SCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHTTTSE
T ss_pred CCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCCE
Confidence 3677777776666554 47888888888877666543
Done!