Query 029501
Match_columns 192
No_of_seqs 112 out of 213
Neff 3.6
Searched_HMMs 13730
Date Mon Mar 25 22:59:32 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029501.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/029501hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1znfa_ g.37.1.1 (A:) XFIN, th 51.0 1.6 0.00012 24.3 0.1 9 116-124 3-11 (26)
2 d1mzba_ a.4.5.42 (A:) Ferric u 20.5 9.9 0.00072 26.4 -0.0 36 51-86 31-67 (134)
3 d2a65a1 f.54.1.1 (A:5-513) Na( 5.7 6.4E+02 0.047 20.0 7.0 25 40-64 41-67 (509)
4 d1otsa_ f.20.1.1 (A:) Clc chlo 5.1 2.8E+02 0.02 22.2 3.9 43 40-83 399-443 (444)
5 d1ppjd2 f.23.11.1 (D:196-241) 4.8 3.5E+02 0.026 15.8 4.9 29 81-109 6-37 (46)
6 d1o89a1 b.35.1.2 (A:1-115,A:29 4.4 1.2E+02 0.0085 20.9 0.9 20 132-151 112-131 (146)
7 d1mmca_ g.3.1.2 (A:) Antimicro 4.3 1.1E+02 0.0081 16.9 0.5 13 113-125 15-27 (30)
8 d2axti1 f.23.37.1 (I:1-35) Pho 4.0 3.8E+02 0.028 15.2 3.3 24 86-111 4-28 (35)
9 d1yg2a_ a.4.5.61 (A:) Hypothet 3.9 1.4E+02 0.0099 20.9 0.9 41 46-86 8-52 (178)
10 d1s6ya1 c.2.1.5 (A:4-172) 6-ph 3.8 1.4E+02 0.01 21.0 0.8 9 111-119 161-169 (169)
No 1
>d1znfa_ g.37.1.1 (A:) XFIN, third domain {Xenopus laevis [TaxId: 8355]}
Probab=50.97 E-value=1.6 Score=24.35 Aligned_cols=9 Identities=56% Similarity=1.099 Sum_probs=7.2
Q ss_pred ccceeeehh
Q 029501 116 FGLCEVTFK 124 (192)
Q Consensus 116 ~~~~~~~~~ 124 (192)
-|+|||.|-
T Consensus 3 cglcersfv 11 (26)
T d1znfa_ 3 CGLCERSFV 11 (26)
T ss_dssp CSSSCCBCS
T ss_pred ccchHHHHH
Confidence 389999984
No 2
>d1mzba_ a.4.5.42 (A:) Ferric uptake regulation protein, FUR {Pseudomonas aeruginosa [TaxId: 287]}
Probab=20.49 E-value=9.9 Score=26.35 Aligned_cols=36 Identities=17% Similarity=-0.038 Sum_probs=28.5
Q ss_pred hhHHHHHhhhhhcCCC-ccchhhhhhhHHHHHHHHHH
Q 029501 51 LPYLYFNVRLYTRRQH-LVDVTEIYSQLTWEKHLRLY 86 (192)
Q Consensus 51 lPll~Yhi~~y~~r~h-LyDpTeIfnqL~~~kKe~~i 86 (192)
-|+.+..++...+.++ -++.++|||+|+.....+.+
T Consensus 31 ~h~sa~ei~~~l~~~~~~i~~aTVYR~L~~l~e~gli 67 (134)
T d1mzba_ 31 RHMSAEDVYKALMEAGEDVGLATVYRVLTQFEAAGLV 67 (134)
T ss_dssp CSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTSE
T ss_pred CCCCHHHHHHHHHHhCCCccHHHHHHHHHHHHhccEE
Confidence 3788888887777765 58999999999888887654
No 3
>d2a65a1 f.54.1.1 (A:5-513) Na(+):neurotransmitter symporter homologue LeuT {Aquifex aeolicus [TaxId: 63363]}
Probab=5.72 E-value=6.4e+02 Score=20.02 Aligned_cols=25 Identities=16% Similarity=0.319 Sum_probs=18.3
Q ss_pred hhhHHHHHHhhhhHHHHHhh--hhhcC
Q 029501 40 ITEHWFMFLLSLPYLYFNVR--LYTRR 64 (192)
Q Consensus 40 LtG~W~~~LLNlPll~Yhi~--~y~~r 64 (192)
+----.++++.+|++.-... |+.++
T Consensus 41 ipY~~~l~l~gvPll~lE~~lGq~~~~ 67 (509)
T d2a65a1 41 IPYIIAFLLVGIPLMWIEWAMGRYGGA 67 (509)
T ss_dssp HHHHHHHHHTHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCCC
Confidence 33344788999999998876 67555
No 4
>d1otsa_ f.20.1.1 (A:) Clc chloride channel {Escherichia coli [TaxId: 562]}
Probab=5.09 E-value=2.8e+02 Score=22.15 Aligned_cols=43 Identities=9% Similarity=0.041 Sum_probs=29.5
Q ss_pred hhhH--HHHHHhhhhHHHHHhhhhhcCCCccchhhhhhhHHHHHHH
Q 029501 40 ITEH--WFMFLLSLPYLYFNVRLYTRRQHLVDVTEIYSQLTWEKHL 83 (192)
Q Consensus 40 LtG~--W~~~LLNlPll~Yhi~~y~~r~hLyDpTeIfnqL~~~kKe 83 (192)
++|. -+.-++-.-+.+|-+.+..+++.+|| +-+-+.++++++|
T Consensus 399 ltg~~~~~~p~~ia~~~a~~v~~~~~~~siY~-~~l~~~~~~~~~~ 443 (444)
T d1otsa_ 399 MTDNYQLILPMIITGLGATLLAQFTGGKPLYS-AILARTLAKQEAE 443 (444)
T ss_dssp HHCCGGGHHHHHHHHHHHHHHHHTTTCCCHHH-HHHHHHHHHHHHC
T ss_pred HHCCHHHHHHHHHHHHHHHHHHHHhCCCChHH-HHHHHHHHhhhcc
Confidence 4553 33334445667888888888888998 5666777777765
No 5
>d1ppjd2 f.23.11.1 (D:196-241) Cytochrome c1 subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase), transmembrane anchor {Cow (Bos taurus) [TaxId: 9913]}
Probab=4.77 E-value=3.5e+02 Score=15.83 Aligned_cols=29 Identities=14% Similarity=-0.054 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHHH---HHHHHHHHHhhcc
Q 029501 81 KHLRLYKLCYLIILLV---LCIFWYCGSRCFD 109 (192)
Q Consensus 81 kKe~~iKLaFYLl~FF---~yLY~mI~sLv~d 109 (192)
+|.--+|....+.++. +|..|-+||.+.+
T Consensus 6 RK~mG~Kv~~~l~~l~~l~yy~KR~~Ws~lKs 37 (46)
T d1ppjd2 6 RKRMGLKMLLMMGLLLPLVYAMKRHKWSVLKS 37 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhccc
Confidence 3444455555444443 3444889988754
No 6
>d1o89a1 b.35.1.2 (A:1-115,A:293-323) Hypothetical protein YhdH {Escherichia coli [TaxId: 562]}
Probab=4.45 E-value=1.2e+02 Score=20.86 Aligned_cols=20 Identities=5% Similarity=0.024 Sum_probs=16.5
Q ss_pred hhhhhccccccccccchhHH
Q 029501 132 LLEEISIDQASVLPTSLLTV 151 (192)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~ 151 (192)
+-|++|.+||+.+|+.-+|.
T Consensus 112 lP~~ls~~eAA~l~~a~~tA 131 (146)
T d1o89a1 112 MPQGQAAKEISLSEAPNFAE 131 (146)
T ss_dssp CCTTSCCEEECGGGHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHH
Confidence 45789999999999887775
No 7
>d1mmca_ g.3.1.2 (A:) Antimicrobial peptide 2, AC-AMP2 {Tassel (Amaranthus caudatus) [TaxId: 3567]}
Probab=4.28 E-value=1.1e+02 Score=16.90 Aligned_cols=13 Identities=46% Similarity=0.674 Sum_probs=10.1
Q ss_pred cccccceeeehhh
Q 029501 113 ESLFGLCEVTFKY 125 (192)
Q Consensus 113 ~~~~~~~~~~~~~ 125 (192)
-|-||.|.+.=||
T Consensus 15 csqfgycg~gpky 27 (30)
T d1mmca_ 15 CSQFGYCGKGPKY 27 (30)
T ss_dssp ECTTSCEESSHHH
T ss_pred hhhcCcccCCccc
Confidence 4678888887776
No 8
>d2axti1 f.23.37.1 (I:1-35) Photosystem II reaction center protein I, PsbI {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=4.04 E-value=3.8e+02 Score=15.18 Aligned_cols=24 Identities=8% Similarity=0.099 Sum_probs=13.4
Q ss_pred HHHHHH-HHHHHHHHHHHHHHhhccCC
Q 029501 86 YKLCYL-IILLVLCIFWYCGSRCFDTL 111 (192)
Q Consensus 86 iKLaFY-Ll~FF~yLY~mI~sLv~d~~ 111 (192)
.|+.-| .+.||..++ |.-.+++|+
T Consensus 4 LKi~Vy~vV~fFv~lF--iFGFLSnDP 28 (35)
T d2axti1 4 LKITVYIVVTFFVLLF--VFGFLSGDP 28 (35)
T ss_dssp HHHHHHHHHHHHHHHH--HHHHHTTCT
T ss_pred EEEehhhHHHHHHHHH--HHhhccCCC
Confidence 355555 456666665 445555554
No 9
>d1yg2a_ a.4.5.61 (A:) Hypothetical protein AphA {Vibrio cholerae [TaxId: 666]}
Probab=3.94 E-value=1.4e+02 Score=20.86 Aligned_cols=41 Identities=10% Similarity=0.020 Sum_probs=30.9
Q ss_pred HHHhhhhHHHHHhhhhhcCC--C--ccchhhhhhhHHHHHHHHHH
Q 029501 46 MFLLSLPYLYFNVRLYTRRQ--H--LVDVTEIYSQLTWEKHLRLY 86 (192)
Q Consensus 46 ~~LLNlPll~Yhi~~y~~r~--h--LyDpTeIfnqL~~~kKe~~i 86 (192)
.++..=|+.-|.+.+.++.. + -.....|++.|++-.++|++
T Consensus 8 g~L~~~~~~GYei~~~~~~~~~~~w~~s~g~iY~~L~kLe~~Gli 52 (178)
T d1yg2a_ 8 TVLSTRDATGYDITKEFSASIGYFWKASHQQVYRELNKMGEQGLV 52 (178)
T ss_dssp HHHHHCCBCHHHHHHHHTTGGGGTCCCCHHHHHHHHHHHHHTTSE
T ss_pred HHHhhCCCCHHHHHHHHHHHhCCccCCCCCcHHHHHHHHHHCCCe
Confidence 34556788999999887664 2 26677799999999988765
No 10
>d1s6ya1 c.2.1.5 (A:4-172) 6-phospho-beta-glucosidase {Bacillus stearothermophilus [TaxId: 1422]}
Probab=3.77 E-value=1.4e+02 Score=21.04 Aligned_cols=9 Identities=44% Similarity=0.992 Sum_probs=6.8
Q ss_pred Cccccccce
Q 029501 111 LHESLFGLC 119 (192)
Q Consensus 111 ~~~~~~~~~ 119 (192)
++++-+|+|
T Consensus 161 p~~kviGlC 169 (169)
T d1s6ya1 161 KQEKVVGLC 169 (169)
T ss_dssp CCCCEEECC
T ss_pred CCCCEEeeC
Confidence 667788887
Done!