BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 029502
         (192 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2Z2R|A Chain A, Nucleosome Assembly Proteins I (Nap-1, 74-365)
 pdb|2Z2R|B Chain B, Nucleosome Assembly Proteins I (Nap-1, 74-365)
          Length = 292

 Score = 37.0 bits (84), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 24/66 (36%), Positives = 34/66 (51%), Gaps = 3/66 (4%)

Query: 33  EASADGEEFGPQDAQLDLSRGIPRFYVMHLENRPLKFSTIT-HHASVTQCLGSIGGHVWY 91
           E   D EE    D++ +  +GIP F++  LEN P+   TIT   A V + L  IG  + Y
Sbjct: 91  ELLVDEEEKAQNDSEEEQVKGIPSFWLTALENLPIVCDTITDRDAEVLEYLQDIG--LEY 148

Query: 92  LGVAKP 97
           L   +P
Sbjct: 149 LTDGRP 154


>pdb|2AYU|A Chain A, The Structure Of Nucleosome Assembly Protein Suggests A
           Mechanism For Histone Binding And Shuttling
          Length = 417

 Score = 36.2 bits (82), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 23/62 (37%), Positives = 33/62 (53%), Gaps = 3/62 (4%)

Query: 37  DGEEFGPQDAQLDLSRGIPRFYVMHLENRPLKFSTIT-HHASVTQCLGSIGGHVWYLGVA 95
           D EE    D++ +  +GIP F++  LEN P+   TIT   A V + L  IG  + YL   
Sbjct: 168 DEEEKAQNDSEEEQVKGIPSFWLTALENLPIVCDTITDRDAEVLEYLQDIG--LEYLTDG 225

Query: 96  KP 97
           +P
Sbjct: 226 RP 227


>pdb|3LZK|A Chain A, The Crystal Structure Of A Probably Aromatic Amino Acid
           Degradation Protein From Sinorhizobium Meliloti 1021
 pdb|3LZK|B Chain B, The Crystal Structure Of A Probably Aromatic Amino Acid
           Degradation Protein From Sinorhizobium Meliloti 1021
 pdb|3LZK|C Chain C, The Crystal Structure Of A Probably Aromatic Amino Acid
           Degradation Protein From Sinorhizobium Meliloti 1021
 pdb|3LZK|D Chain D, The Crystal Structure Of A Probably Aromatic Amino Acid
           Degradation Protein From Sinorhizobium Meliloti 1021
          Length = 359

 Score = 29.6 bits (65), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 15/46 (32%), Positives = 22/46 (47%)

Query: 37  DGEEFGPQDAQLDLSRGIPRFYVMHLENRPLKFSTITHHASVTQCL 82
           +GE FG  +A +D +   P+  V     RPL   TI    +V+  L
Sbjct: 245 NGEPFGRANAGIDXTFDFPQLIVHAARTRPLSAGTIIGSGTVSNKL 290


>pdb|3DDN|A Chain A, Crystal Structure Of Hydroxypyruvic Acid Phosphate Bound
           D-3- Phosphoglycerate Dehydrogenase In Mycobacterium
           Tuberculosis
 pdb|3DDN|B Chain B, Crystal Structure Of Hydroxypyruvic Acid Phosphate Bound
           D-3- Phosphoglycerate Dehydrogenase In Mycobacterium
           Tuberculosis
          Length = 528

 Score = 27.3 bits (59), Expect = 5.4,   Method: Compositional matrix adjust.
 Identities = 25/87 (28%), Positives = 37/87 (42%), Gaps = 7/87 (8%)

Query: 29  GQVIEASADGEEFGPQDAQLDLSRGIPRFYVMHLENRPLKFSTITHHASVTQCLGSIGGH 88
           G V+  S  G  +GPQ     LS+ I +    H + R    + I H+      LG IG  
Sbjct: 421 GSVVTVS--GTLYGPQ-----LSQKIVQINGRHFDLRAQGINLIIHYVDRPGALGKIGTL 473

Query: 89  VWYLGVAKPSILDSTETEGDMGTNIVR 115
           +   GV   +   S + EG   T ++R
Sbjct: 474 LGTAGVNIQAAQLSEDAEGPGATILLR 500


>pdb|1YGY|A Chain A, Crystal Structure Of D-3-Phosphoglycerate Dehydrogenase
           From Mycobacterium Tuberculosis
 pdb|1YGY|B Chain B, Crystal Structure Of D-3-Phosphoglycerate Dehydrogenase
           From Mycobacterium Tuberculosis
 pdb|3DC2|A Chain A, Crystal Structure Of Serine Bound D-3-Phosphoglycerate
           Dehydrogenase From Mycobacterium Tuberculosis
 pdb|3DC2|B Chain B, Crystal Structure Of Serine Bound D-3-Phosphoglycerate
           Dehydrogenase From Mycobacterium Tuberculosis
          Length = 529

 Score = 27.3 bits (59), Expect = 5.5,   Method: Compositional matrix adjust.
 Identities = 25/87 (28%), Positives = 37/87 (42%), Gaps = 7/87 (8%)

Query: 29  GQVIEASADGEEFGPQDAQLDLSRGIPRFYVMHLENRPLKFSTITHHASVTQCLGSIGGH 88
           G V+  S  G  +GPQ     LS+ I +    H + R    + I H+      LG IG  
Sbjct: 422 GSVVTVS--GTLYGPQ-----LSQKIVQINGRHFDLRAQGINLIIHYVDRPGALGKIGTL 474

Query: 89  VWYLGVAKPSILDSTETEGDMGTNIVR 115
           +   GV   +   S + EG   T ++R
Sbjct: 475 LGTAGVNIQAAQLSEDAEGPGATILLR 501


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.321    0.137    0.423 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,806,989
Number of Sequences: 62578
Number of extensions: 231047
Number of successful extensions: 362
Number of sequences better than 100.0: 6
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 358
Number of HSP's gapped (non-prelim): 6
length of query: 192
length of database: 14,973,337
effective HSP length: 93
effective length of query: 99
effective length of database: 9,153,583
effective search space: 906204717
effective search space used: 906204717
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 49 (23.5 bits)