BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 029502
         (192 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|P25293|NAP1_YEAST Nucleosome assembly protein OS=Saccharomyces cerevisiae (strain
           ATCC 204508 / S288c) GN=NAP1 PE=1 SV=2
          Length = 417

 Score = 36.2 bits (82), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 23/62 (37%), Positives = 33/62 (53%), Gaps = 3/62 (4%)

Query: 37  DGEEFGPQDAQLDLSRGIPRFYVMHLENRPLKFSTIT-HHASVTQCLGSIGGHVWYLGVA 95
           D EE    D++ +  +GIP F++  LEN P+   TIT   A V + L  IG  + YL   
Sbjct: 168 DEEEKAQNDSEEEQVKGIPSFWLTALENLPIVCDTITDRDAEVLEYLQDIG--LEYLTDG 225

Query: 96  KP 97
           +P
Sbjct: 226 RP 227


>sp|C1DFA8|ALLA_AZOVD Ureidoglycolate hydrolase OS=Azotobacter vinelandii (strain DJ /
           ATCC BAA-1303) GN=allA PE=3 SV=1
          Length = 166

 Score = 31.2 bits (69), Expect = 4.7,   Method: Compositional matrix adjust.
 Identities = 40/176 (22%), Positives = 64/176 (36%), Gaps = 49/176 (27%)

Query: 13  VKLRAIEATAES-FKEYGQVIE------------------ASADGEEFGPQDAQLDLSRG 53
           +++ +IE  +++ F  +G+VIE                  A A+ +   P+D      R 
Sbjct: 1   MRILSIEPLSKAAFAPFGEVIETEGSDYFMINGGSTRRYHALAEVQTSAPED------RA 54

Query: 54  IPRFYVMHLENRPLKFSTITHHASVTQCLGSIGGHVWYLGVAKPSILDSTETEGDMGTNI 113
           I   +V      PL    +  H   +Q    + G+ + + VA P         GD     
Sbjct: 55  IVSIFVARALPMPLTIRMLERHPLGSQAFVPLRGNPFLIVVAPP---------GDA---- 101

Query: 114 VRSHCGHFYVPPAIEDVRVFKIAGPKFLKLNRGTWHAGPLFKADDMDFYNLELSNT 169
                      P  E VRVF   G + +   RG WH   L   DD +F  ++ S  
Sbjct: 102 -----------PRPEQVRVFLGNGRQGVNYQRGVWHHPVLALLDDDEFLVIDRSGA 146


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.321    0.137    0.423 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 70,873,057
Number of Sequences: 539616
Number of extensions: 2825132
Number of successful extensions: 5619
Number of sequences better than 100.0: 4
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 5618
Number of HSP's gapped (non-prelim): 4
length of query: 192
length of database: 191,569,459
effective HSP length: 111
effective length of query: 81
effective length of database: 131,672,083
effective search space: 10665438723
effective search space used: 10665438723
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 58 (26.9 bits)