Query 029502
Match_columns 192
No_of_seqs 105 out of 387
Neff 5.0
Searched_HMMs 46136
Date Fri Mar 29 13:56:21 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029502.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/029502hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF04115 Ureidogly_hydro: Urei 100.0 2.9E-43 6.3E-48 287.8 10.7 145 12-180 1-159 (165)
2 PRK03606 ureidoglycolate hydro 100.0 6.8E-42 1.5E-46 280.3 14.4 142 13-180 2-155 (162)
3 COG3194 DAL3 Ureidoglycolate h 100.0 2.5E-41 5.5E-46 275.7 12.1 131 12-167 1-144 (168)
4 PRK13395 ureidoglycolate hydro 100.0 1.2E-40 2.5E-45 275.1 14.0 142 13-180 2-156 (171)
5 COG3822 ABC-type sugar transpo 82.4 5.1 0.00011 34.7 6.6 102 66-177 95-196 (225)
6 PF05523 FdtA: WxcM-like, C-te 80.8 3.3 7.2E-05 32.6 4.7 52 68-150 44-96 (131)
7 PF07385 DUF1498: Protein of u 69.6 9.3 0.0002 33.5 4.8 100 66-175 96-195 (225)
8 PF07883 Cupin_2: Cupin domain 64.7 9.4 0.0002 25.3 3.2 60 69-164 10-70 (71)
9 smart00835 Cupin_1 Cupin. This 49.5 1.2E+02 0.0026 23.5 8.4 37 128-165 72-109 (146)
10 PF01050 MannoseP_isomer: Mann 43.5 44 0.00096 27.1 4.4 42 131-174 102-143 (151)
11 KOG0148 Apoptosis-promoting RN 32.1 18 0.00039 33.0 0.5 19 15-34 74-92 (321)
12 PRK13290 ectC L-ectoine syntha 25.8 1.4E+02 0.003 23.3 4.4 32 131-164 75-106 (125)
13 KOG3374 Cellular repressor of 23.2 78 0.0017 27.2 2.7 31 24-63 70-100 (210)
14 PF02311 AraC_binding: AraC-li 21.5 1.4E+02 0.003 21.2 3.5 37 131-168 41-78 (136)
15 COG0662 {ManC} Mannose-6-phosp 20.7 3.9E+02 0.0084 20.3 7.9 60 71-167 50-109 (127)
No 1
>PF04115 Ureidogly_hydro: Ureidoglycolate hydrolase ; InterPro: IPR007247 Ureidoglycolate hydrolase (3.5.3.19 from EC) carries out the third step in the degradation of allantoin.; GO: 0004848 ureidoglycolate hydrolase activity, 0000256 allantoin catabolic process; PDB: 1YQC_B 1XSR_A 2BDR_B 1XSQ_A.
Probab=100.00 E-value=2.9e-43 Score=287.81 Aligned_cols=145 Identities=26% Similarity=0.347 Sum_probs=106.4
Q ss_pred eeeEEeeeCChhhccCCcceEeeCCC-------CC-CCCCCCceeecC---CCeeeEEEEeecC--CCceeeeeecCCCC
Q 029502 12 TVKLRAIEATAESFKEYGQVIEASAD-------GE-EFGPQDAQLDLS---RGIPRFYVMHLEN--RPLKFSTITHHASV 78 (192)
Q Consensus 12 ~~~l~a~pLT~eaFAPfG~VI~~~~~-------~~-~~~~~~a~~~~~---~G~~~f~i~~~~~--~p~~v~~lERHp~t 78 (192)
|++|+++|||+|||||||+||+..+. |. ...++.+.++.+ +|.+++++++++. .|++|++|||||++
T Consensus 1 m~~i~~~pLT~eaFaPyG~vi~~~~~~~~~~n~g~a~r~~~~~~~~~~~~~~~~~~~si~~~~~~~~p~~v~~lERHp~t 80 (165)
T PF04115_consen 1 MKTIKAEPLTPEAFAPYGDVIELDDAEPFPINQGTAERFHDLAPLDFSGGEGGRPGISIFRAQPRELPFEVSMLERHPLT 80 (165)
T ss_dssp -EEEEEEE--HHHHTTTEEEE-STT--EEEETTTTEEEEEEEEEE-BSS-TTSCEEEEEEEEEBE-SSEEEEEEEE-TTB
T ss_pred CceeeeeECCHHHhccceeEEccCCCCceeccCCcceEEeccceeecccCCCCcEEEEEEEeeccCCccccceeccCCCe
Confidence 57899999999999999999998421 11 112345666664 4678999998754 58999999999999
Q ss_pred eeeeeeccCCe-EEEEEeCCCCCCCCcccCCCCcceeeccCCCcCCCCCcCCeEEEEEeCCeeEEecCCCcCCCcccCCC
Q 029502 79 TQCLGSIGGHV-WYLGVAKPSILDSTETEGDMGTNIVRSHCGHFYVPPAIEDVRVFKIAGPKFLKLNRGTWHAGPLFKAD 157 (192)
Q Consensus 79 SQaFiPl~~~~-~lvvVA~~~~~~~~e~~~~~~~~~~~~~~g~~~~~Pdl~~lrAFi~~~gQgV~y~~GtWHa~pl~~~~ 157 (192)
||+|+||++.+ |+||||+++. .||++++|||+++++|||+|++||||++++..++
T Consensus 81 sQ~fiPl~~~~~~lvvVA~~~~------------------------~Pd~~~lrAF~~~~gqgV~~~~GvWH~~~~~l~~ 136 (165)
T PF04115_consen 81 SQAFIPLDGSPWYLVVVAPDDD------------------------GPDPETLRAFLAPGGQGVNYHRGVWHHPLLPLDE 136 (165)
T ss_dssp -EEEEESBS---EEEEEEESSS------------------------S-ECCCEEEEEE-SS-EEEE-TT-EE-S-EESSS
T ss_pred eEEEEECCCCccEEEEEcCCCC------------------------CCCccceEEEEEcCCEEEEECCCceeCCccccCC
Confidence 99999999999 9999998652 7999999999999999999999999997777788
Q ss_pred cccEEEEEecCCccccccccccc
Q 029502 158 DMDFYNLELSNTNVISSLFLSLS 180 (192)
Q Consensus 158 ~~dF~vle~~~t~~~d~~~~~~~ 180 (192)
+++|+++++.+++..||+...++
T Consensus 137 ~~~f~vv~~~~~~~~dce~~~~~ 159 (165)
T PF04115_consen 137 PADFLVVDRIDGPGDDCEEVELD 159 (165)
T ss_dssp EEEEEEEEEESSTS-T-EEEEEE
T ss_pred cceEEEEeCCcCCCCCcEEEeCC
Confidence 99999999999988888877654
No 2
>PRK03606 ureidoglycolate hydrolase; Provisional
Probab=100.00 E-value=6.8e-42 Score=280.26 Aligned_cols=142 Identities=21% Similarity=0.269 Sum_probs=116.3
Q ss_pred eeEEeeeCChhhccCCcceEeeCCC-------CC-CCCCCCceeecC--CCeeeEEEEeecCC--CceeeeeecCCCCee
Q 029502 13 VKLRAIEATAESFKEYGQVIEASAD-------GE-EFGPQDAQLDLS--RGIPRFYVMHLENR--PLKFSTITHHASVTQ 80 (192)
Q Consensus 13 ~~l~a~pLT~eaFAPfG~VI~~~~~-------~~-~~~~~~a~~~~~--~G~~~f~i~~~~~~--p~~v~~lERHp~tSQ 80 (192)
++|+++|||+|||||||+||+..+. |. ...++.|+++.. +|+++++++|++.+ |+++++|||||++||
T Consensus 2 ~~l~~~pLT~eaFaPfG~VI~~~~~~~~~iN~G~~~r~~~la~~~~~~~~g~~~isifr~~~~~~p~~~~~mERHp~~sQ 81 (162)
T PRK03606 2 RTLQIEPLTKEAFAPFGDVIETDGADFFHINNGTTERYHDLARVEVAGEGGRALISIFRAQPRALPLEIRMLERHPLGSQ 81 (162)
T ss_pred CceeeeECCHHHcCccccEEccCCCCceeccCcceeEeecceeccccCCCCceEEEEEeCcccCCCcceeeEEeCCCceE
Confidence 4699999999999999999997632 11 123567888764 45889999999765 899999999999999
Q ss_pred eeeeccCCeEEEEEeCCCCCCCCcccCCCCcceeeccCCCcCCCCCcCCeEEEEEeCCeeEEecCCCcCCCcccCCCccc
Q 029502 81 CLGSIGGHVWYLGVAKPSILDSTETEGDMGTNIVRSHCGHFYVPPAIEDVRVFKIAGPKFLKLNRGTWHAGPLFKADDMD 160 (192)
Q Consensus 81 aFiPl~~~~~lvvVA~~~~~~~~e~~~~~~~~~~~~~~g~~~~~Pdl~~lrAFi~~~gQgV~y~~GtWHa~pl~~~~~~d 160 (192)
||+||++.+|+|+||+++. +|++++|||+++|+|||+|++||||++++.++++.|
T Consensus 82 afiPl~~~~~lvvVA~~~~-------------------------~~~~~~raF~~~~~qgV~y~~G~WH~pl~~l~~~~d 136 (162)
T PRK03606 82 AFIPLNGRPFLVVVAPDGD-------------------------GDPGTPRAFVTNGRQGVNYHRGVWHHPLLALGEVSD 136 (162)
T ss_pred EEEECCCCEEEEEEeCCCC-------------------------CCccceEEEEecCCcEEEeCCCcccccccccCCCce
Confidence 9999999999999998764 266899999999999999999999964444477899
Q ss_pred EEEEEecCCccccccccccc
Q 029502 161 FYNLELSNTNVISSLFLSLS 180 (192)
Q Consensus 161 F~vle~~~t~~~d~~~~~~~ 180 (192)
|+|+++. +.+.||+.+.++
T Consensus 137 F~vvdr~-g~g~ncee~~~~ 155 (162)
T PRK03606 137 FLVVDRG-GPGDNLEEHFFP 155 (162)
T ss_pred EEEEeCC-cCCCCceEEECC
Confidence 9999974 456666665553
No 3
>COG3194 DAL3 Ureidoglycolate hydrolase [Nucleotide transport and metabolism]
Probab=100.00 E-value=2.5e-41 Score=275.71 Aligned_cols=131 Identities=23% Similarity=0.322 Sum_probs=108.9
Q ss_pred eeeEEeeeCChhhccCCcceEeeCCCCC--------CCCCCCceeecCC-C-eeeEEEEeecC--CCceeeeeecCCCCe
Q 029502 12 TVKLRAIEATAESFKEYGQVIEASADGE--------EFGPQDAQLDLSR-G-IPRFYVMHLEN--RPLKFSTITHHASVT 79 (192)
Q Consensus 12 ~~~l~a~pLT~eaFAPfG~VI~~~~~~~--------~~~~~~a~~~~~~-G-~~~f~i~~~~~--~p~~v~~lERHp~tS 79 (192)
|++|+++|||+|||||||+||+..+... ...++.++++.++ + ++.+.++|.++ .|++|++|||||++|
T Consensus 1 m~~l~~~pLT~EaFapfGdVIe~~~~~~~~iN~G~~~ryh~la~vE~~g~~~r~linifr~~p~~~p~~I~~lERHP~gS 80 (168)
T COG3194 1 MKTLTARPLTKEAFAPFGDVIETDQAKMFHINGGTAERYHDLARVEAAGEDARTLINIFRAQPAVHPLTISMLERHPLGS 80 (168)
T ss_pred CceeeeeccchhhhccccccccccccceeeecCchhhhhhhhhhhhhcCCCcceEEEEeecccCcCCceeeEEeecCCcc
Confidence 4689999999999999999999764211 1224555555432 2 56788888765 489999999999999
Q ss_pred eeeeeccCCeEEEEEeCCCCCCCCcccCCCCcceeeccCCCcCCCCCcCCeEEEEEeCCeeEEecCCCcCCCcccC-CCc
Q 029502 80 QCLGSIGGHVWYLGVAKPSILDSTETEGDMGTNIVRSHCGHFYVPPAIEDVRVFKIAGPKFLKLNRGTWHAGPLFK-ADD 158 (192)
Q Consensus 80 QaFiPl~~~~~lvvVA~~~~~~~~e~~~~~~~~~~~~~~g~~~~~Pdl~~lrAFi~~~gQgV~y~~GtWHa~pl~~-~~~ 158 (192)
|+|+||++.+||||||+.+. .||++++|||++.|+|||||++||||| ||+. ++.
T Consensus 81 QaFiPl~~~~fLVVVA~~~~------------------------~pd~~~~rAF~a~g~QgVnY~rnvWH~-pl~~l~~~ 135 (168)
T COG3194 81 QAFIPLSGRPFLVVVAPDGG------------------------KPDPSTPRAFIANGRQGVNYHRNVWHH-PLTPLGKV 135 (168)
T ss_pred eeeeecCCCeEEEEEEcCCC------------------------CCCCCceeEEEecCccceeeccceecc-ceeccccc
Confidence 99999999999999998752 799999999999999999999999997 5555 788
Q ss_pred ccEEEEEec
Q 029502 159 MDFYNLELS 167 (192)
Q Consensus 159 ~dF~vle~~ 167 (192)
.||+++++.
T Consensus 136 ~dF~vvdr~ 144 (168)
T COG3194 136 TDFLVVDRE 144 (168)
T ss_pred ceEEEEEec
Confidence 999999987
No 4
>PRK13395 ureidoglycolate hydrolase; Provisional
Probab=100.00 E-value=1.2e-40 Score=275.06 Aligned_cols=142 Identities=22% Similarity=0.281 Sum_probs=111.6
Q ss_pred eeEEeeeCChhhccCCcceEeeCCCC-------C-CCCCCCceeecC--CCeeeEEEEeecCC--CceeeeeecCCCCee
Q 029502 13 VKLRAIEATAESFKEYGQVIEASADG-------E-EFGPQDAQLDLS--RGIPRFYVMHLENR--PLKFSTITHHASVTQ 80 (192)
Q Consensus 13 ~~l~a~pLT~eaFAPfG~VI~~~~~~-------~-~~~~~~a~~~~~--~G~~~f~i~~~~~~--p~~v~~lERHp~tSQ 80 (192)
.+|+++|||+|||||||+||+..+.. . ...++.++++.. +|.+++++||++++ |++|++|||||++||
T Consensus 2 ~~i~~~pLT~eaFaPfG~VI~~~~~~~~~iN~G~~~r~h~la~~d~~~~~g~~~isifr~~p~~~p~~i~~mERHp~~sQ 81 (171)
T PRK13395 2 KTLRAERLTREAFAPFGDVIELDGARHFPINGGTTERFHDLATIDVTGDGGRPLVSLFRAQPRALPVAITMMERHPLGSQ 81 (171)
T ss_pred CceeeeECCHHHcCccceeEecCCCCcceecCcceEEeccceeeeccCCCCceEEEEEeccccCCCcceeeEEECCCceE
Confidence 46999999999999999999976321 1 123567888764 45889999999765 899999999999999
Q ss_pred eeeeccC-CeEEEEEeCCCCCCCCcccCCCCcceeeccCCCcCCCCCcCCeEEEEEeCCeeEEecCCCcCCCcccCCCcc
Q 029502 81 CLGSIGG-HVWYLGVAKPSILDSTETEGDMGTNIVRSHCGHFYVPPAIEDVRVFKIAGPKFLKLNRGTWHAGPLFKADDM 159 (192)
Q Consensus 81 aFiPl~~-~~~lvvVA~~~~~~~~e~~~~~~~~~~~~~~g~~~~~Pdl~~lrAFi~~~gQgV~y~~GtWHa~pl~~~~~~ 159 (192)
||+||++ .+|+||||+++ .++++++|||+++|+|||||++|||||+++.++++.
T Consensus 82 afiPl~~~~~~lvVvap~~-------------------------~~~pd~~~aF~~~g~qgV~y~~GtWH~pl~~L~~~~ 136 (171)
T PRK13395 82 AFIPLAAVSRYAVVVAPAG-------------------------EFRPDEMRAFLAEGWQGVNYAKGVWHHPLLALDAVS 136 (171)
T ss_pred EEEECCCCCCEEEEEccCC-------------------------CCCCCceEEEEecCCcEEEeCCCcccccccccCCCc
Confidence 9999999 55656555432 123457999999999999999999998555557789
Q ss_pred cEEEEEecCCccccccccccc
Q 029502 160 DFYNLELSNTNVISSLFLSLS 180 (192)
Q Consensus 160 dF~vle~~~t~~~d~~~~~~~ 180 (192)
||+|+++. +.+.||+.+.++
T Consensus 137 dF~vvdr~-g~~~nc~e~~~~ 156 (171)
T PRK13395 137 DFVVVDRG-GPQPNCDEIPLD 156 (171)
T ss_pred cEEEEeCC-cCCCCceEEECC
Confidence 99999854 456677666654
No 5
>COG3822 ABC-type sugar transport system, auxiliary component [General function prediction only]
Probab=82.39 E-value=5.1 Score=34.70 Aligned_cols=102 Identities=16% Similarity=0.139 Sum_probs=59.2
Q ss_pred CceeeeeecCCCCeeeeeeccCCeEEEEEeCCCCCCCCcccCCCCcceeeccCCCcCCCCCcCCeEEEEEeCCeeEEecC
Q 029502 66 PLKFSTITHHASVTQCLGSIGGHVWYLGVAKPSILDSTETEGDMGTNIVRSHCGHFYVPPAIEDVRVFKIAGPKFLKLNR 145 (192)
Q Consensus 66 p~~v~~lERHp~tSQaFiPl~~~~~lvvVA~~~~~~~~e~~~~~~~~~~~~~~g~~~~~Pdl~~lrAFi~~~gQgV~y~~ 145 (192)
+-.++.|-||+.-..-.+--++..+++=.-..+.+ .++++.++ -.|+.- |. .-....=--.+..|||-|++-+
T Consensus 95 ~gQvtPmHrH~~k~eDiinrgggtlv~el~~~d~~-~~~~~ks~--vtv~~d-g~---r~~~~ag~~lkL~PGesitL~P 167 (225)
T COG3822 95 PGQVTPMHRHWRKPEDIINRGGGTLVVELWNVDLV-EGQDEKSD--VTVPVD-GC---RQTHTAGSQLKLSPGESITLPP 167 (225)
T ss_pred cCCcCcccccccchhhhhhcCCceEEEEEeccccc-cCcCCCCC--eEecCC-Cc---EEEeccceeEEECCCCcEecCC
Confidence 44677899999888887777777655544433321 11211111 111111 10 1001111224689999999999
Q ss_pred CCcCCCcccCCCcccEEEEEecCCcccccccc
Q 029502 146 GTWHAGPLFKADDMDFYNLELSNTNVISSLFL 177 (192)
Q Consensus 146 GtWHa~pl~~~~~~dF~vle~~~t~~~d~~~~ 177 (192)
|+||+ +-.+..+-++-|.|.+|-.+|...
T Consensus 168 g~~Hs---Fwae~g~vlvgEvSsvndD~hDn~ 196 (225)
T COG3822 168 GLYHS---FWAEEGGVLVGEVSSVNDDLHDNI 196 (225)
T ss_pred Cceee---eeecCCcEEEEEEeeccCccccch
Confidence 99997 444445666778888877777644
No 6
>PF05523 FdtA: WxcM-like, C-terminal ; InterPro: IPR008894 This entry includes FdtA (Q6T1W8 from SWISSPROT) from Aneurinibacillus thermoaerophilus, which has been characterised as a dTDP-6-deoxy-3,4-keto-hexulose isomerase []. It also includes WxcM (Q93S92 from SWISSPROT) from Xanthomonas campestris pv campestris) []. ; PDB: 2PAK_A 2PAE_A 2PA7_B 2PAM_A.
Probab=80.81 E-value=3.3 Score=32.55 Aligned_cols=52 Identities=21% Similarity=0.268 Sum_probs=29.7
Q ss_pred eeeeeecCCCCeeeeeeccCCeEEEEEeCCCCCCCCcccCCCCcceeeccCCCcCCCCCcCCeEEEE-EeCCeeEEecCC
Q 029502 68 KFSTITHHASVTQCLGSIGGHVWYLGVAKPSILDSTETEGDMGTNIVRSHCGHFYVPPAIEDVRVFK-IAGPKFLKLNRG 146 (192)
Q Consensus 68 ~v~~lERHp~tSQaFiPl~~~~~lvvVA~~~~~~~~e~~~~~~~~~~~~~~g~~~~~Pdl~~lrAFi-~~~gQgV~y~~G 146 (192)
.++-.=+|...+|.|+.+.|+ +.|.+- ++. +. +-|+ -.+.+|+.+-+|
T Consensus 44 ~~RG~H~Hk~~~~~~~~l~Gs-~~v~~~-d~~----------------------------~~-~~~~L~~~~~~L~Ippg 92 (131)
T PF05523_consen 44 VIRGWHAHKKTTQWFIVLSGS-FKVVLD-DGR----------------------------EE-EEFILDEPNKGLYIPPG 92 (131)
T ss_dssp --EEEEEESS--EEEEEEES--EEEEEE--SS-----------------------------E-EEEEE--TTEEEEE-TT
T ss_pred CcccccccccccEEEEEEeCE-EEEEEe-cCC----------------------------Cc-EEEEECCCCeEEEECCc
Confidence 347788999999999999875 344422 211 12 4444 455589999999
Q ss_pred CcCC
Q 029502 147 TWHA 150 (192)
Q Consensus 147 tWHa 150 (192)
+||.
T Consensus 93 ~w~~ 96 (131)
T PF05523_consen 93 VWHG 96 (131)
T ss_dssp -EEE
T ss_pred hhhH
Confidence 9996
No 7
>PF07385 DUF1498: Protein of unknown function (DUF1498); InterPro: IPR010864 This family consists of several hypothetical bacterial proteins of around 225 residues in length. The function of this family is unknown.; PDB: 3MPB_B 3KMH_A.
Probab=69.62 E-value=9.3 Score=33.47 Aligned_cols=100 Identities=17% Similarity=0.113 Sum_probs=49.8
Q ss_pred CceeeeeecCCCCeeeeeeccCCeEEEEEeCCCCCCCCcccCCCCcceeeccCCCcCCCCCcCCeEEEEEeCCeeEEecC
Q 029502 66 PLKFSTITHHASVTQCLGSIGGHVWYLGVAKPSILDSTETEGDMGTNIVRSHCGHFYVPPAIEDVRVFKIAGPKFLKLNR 145 (192)
Q Consensus 66 p~~v~~lERHp~tSQaFiPl~~~~~lvvVA~~~~~~~~e~~~~~~~~~~~~~~g~~~~~Pdl~~lrAFi~~~gQgV~y~~ 145 (192)
+-.++.|=+|..-.+-+|--++...+|-|..++.+. + -+....+.-..-|..+-.|.=+. -+..|||.|++-+
T Consensus 96 ~~Q~tP~H~H~~K~EDIINRGGG~L~i~l~~s~~~~--~--~~~~~~v~V~~DG~~~t~~aG~~---l~L~PGESiTL~P 168 (225)
T PF07385_consen 96 EGQVTPMHFHWKKMEDIINRGGGNLVIELYNSDPDG--E--LDADTDVTVPVDGIRRTVPAGTQ---LRLNPGESITLPP 168 (225)
T ss_dssp BT-EEEEEEESS--EEEEEEEES-EEEEEEEB--TT--S--SB-SS-EEEEETTEEEEE-TT-E---EEE-TT-EEEE-T
T ss_pred CCCcCCcccCcchhhheeecCCceEEEEEEeccCCC--c--cccCCCeEEecCCcEEEecCCce---EEeCCCCeEeeCC
Confidence 345677889999999999998887777776554321 1 01111111122232222232222 3679999999999
Q ss_pred CCcCCCcccCCCcccEEEEEecCCcccccc
Q 029502 146 GTWHAGPLFKADDMDFYNLELSNTNVISSL 175 (192)
Q Consensus 146 GtWHa~pl~~~~~~dF~vle~~~t~~~d~~ 175 (192)
|+||. +-.+..+-++=|.|..|=.+..
T Consensus 169 g~yH~---Fw~e~g~vLigEVStvNDD~tD 195 (225)
T PF07385_consen 169 GIYHW---FWGEGGDVLIGEVSTVNDDNTD 195 (225)
T ss_dssp TEEEE---EEE-TTSEEEEEEEE---TTTS
T ss_pred CCeee---EEecCCCEEEEeeecccCCCcc
Confidence 99996 4433445555588766544443
No 8
>PF07883 Cupin_2: Cupin domain; InterPro: IPR013096 This family represents the conserved barrel domain of the cupin superfamily [] (cupa is the Latin term for a small barrel). ; PDB: 2OPK_C 3BU7_B 2PHD_D 3NVC_A 3NKT_A 3NJZ_A 3NW4_A 3NST_A 3NL1_A 2H0V_A ....
Probab=64.70 E-value=9.4 Score=25.28 Aligned_cols=60 Identities=12% Similarity=0.075 Sum_probs=41.4
Q ss_pred eeeeecCCCCeeeeeeccCCeEEEEEeCCCCCCCCcccCCCCcceeeccCCCcCCCCCcCCeEEEEEeCCeeEEecCCCc
Q 029502 69 FSTITHHASVTQCLGSIGGHVWYLGVAKPSILDSTETEGDMGTNIVRSHCGHFYVPPAIEDVRVFKIAGPKFLKLNRGTW 148 (192)
Q Consensus 69 v~~lERHp~tSQaFiPl~~~~~lvvVA~~~~~~~~e~~~~~~~~~~~~~~g~~~~~Pdl~~lrAFi~~~gQgV~y~~GtW 148 (192)
-....+|+...|.+.-|.+.- .+.+. + +.+...+|+.+.+.+|+|
T Consensus 10 ~~~~h~H~~~~e~~~vl~G~~-~~~~~--~--------------------------------~~~~l~~Gd~~~i~~~~~ 54 (71)
T PF07883_consen 10 SIPPHRHPGEDEFFYVLSGEG-TLTVD--G--------------------------------ERVELKPGDAIYIPPGVP 54 (71)
T ss_dssp EEEEEEESSEEEEEEEEESEE-EEEET--T--------------------------------EEEEEETTEEEEEETTSE
T ss_pred CCCCEECCCCCEEEEEEECCE-EEEEc--c--------------------------------EEeEccCCEEEEECCCCe
Confidence 345778988889998888763 23221 1 167889999999999999
Q ss_pred CCCcccC-CCcccEEEE
Q 029502 149 HAGPLFK-ADDMDFYNL 164 (192)
Q Consensus 149 Ha~pl~~-~~~~dF~vl 164 (192)
|. ..-. ++++.|+++
T Consensus 55 H~-~~n~~~~~~~~l~V 70 (71)
T PF07883_consen 55 HQ-VRNPGDEPARFLVV 70 (71)
T ss_dssp EE-EEEESSSEEEEEEE
T ss_pred EE-EEECCCCCEEEEEE
Confidence 96 3222 356666654
No 9
>smart00835 Cupin_1 Cupin. This family represents the conserved barrel domain of the 'cupin' superfamily ('cupa' is the Latin term for a small barrel). This family contains 11S and 7S plant seed storage proteins, and germins. Plant seed storage proteins provide the major nitrogen source for the developing plant.
Probab=49.55 E-value=1.2e+02 Score=23.47 Aligned_cols=37 Identities=11% Similarity=0.234 Sum_probs=26.3
Q ss_pred CCeEEEEEeCCeeEEecCCCcCCCcccC-CCcccEEEEE
Q 029502 128 EDVRVFKIAGPKFLKLNRGTWHAGPLFK-ADDMDFYNLE 165 (192)
Q Consensus 128 ~~lrAFi~~~gQgV~y~~GtWHa~pl~~-~~~~dF~vle 165 (192)
+.-+.+.+.+|+.+.+.+|++|. -... .+...|+++.
T Consensus 72 ~~~~~~~l~~GD~~~ip~g~~H~-~~n~~~~~~~~l~~~ 109 (146)
T smart00835 72 NKVYDARLREGDVFVVPQGHPHF-QVNSGDENLEFVAFN 109 (146)
T ss_pred CeEEEEEecCCCEEEECCCCEEE-EEcCCCCCEEEEEEe
Confidence 36678999999999999999995 3222 2445555443
No 10
>PF01050 MannoseP_isomer: Mannose-6-phosphate isomerase; InterPro: IPR001538 Mannose-6-phosphate isomerase or phosphomannose isomerase (5.3.1.8 from EC) (PMI) is the enzyme that catalyses the interconversion of mannose-6-phosphate and fructose-6-phosphate. In eukaryotes PMI is involved in the synthesis of GDP-mannose, a constituent of N- and O-linked glycans and GPI anchors and in prokaryotes it participates in a variety of pathways, including capsular polysaccharide biosynthesis and D-mannose metabolism. PMI's belong to the cupin superfamily whose functions range from isomerase and epimerase activities involved in the modification of cell wall carbohydrates in bacteria and plants, to non-enzymatic storage proteins in plant seeds, and transcription factors linked to congenital baldness in mammals []. Three classes of PMI have been defined []. The type II phosphomannose isomerases are bifunctional enzymes 5.3.1.8 from EC. This entry covers the isomerase region of the protein []. The guanosine diphospho-D-mannose pyrophosphorylase region is described in another InterPro entry (see IPR005836 from INTERPRO).; GO: 0016779 nucleotidyltransferase activity, 0005976 polysaccharide metabolic process
Probab=43.55 E-value=44 Score=27.09 Aligned_cols=42 Identities=12% Similarity=0.204 Sum_probs=29.1
Q ss_pred EEEEEeCCeeEEecCCCcCCCcccCCCcccEEEEEecCCccccc
Q 029502 131 RVFKIAGPKFLKLNRGTWHAGPLFKADDMDFYNLELSNTNVISS 174 (192)
Q Consensus 131 rAFi~~~gQgV~y~~GtWHa~pl~~~~~~dF~vle~~~t~~~d~ 174 (192)
+.+.+.+|+.|.+.+|++|. +-.........+|..-++.+++
T Consensus 102 ~~~~~~~g~sv~Ip~g~~H~--i~n~g~~~L~~IEVq~G~~l~e 143 (151)
T PF01050_consen 102 EEFTLKEGDSVYIPRGAKHR--IENPGKTPLEIIEVQTGEYLGE 143 (151)
T ss_pred EEEEEcCCCEEEECCCCEEE--EECCCCcCcEEEEEecCCCCCc
Confidence 57889999999999999994 3332344556666665554443
No 11
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=32.07 E-value=18 Score=32.96 Aligned_cols=19 Identities=26% Similarity=0.524 Sum_probs=13.9
Q ss_pred EEeeeCChhhccCCcceEee
Q 029502 15 LRAIEATAESFKEYGQVIEA 34 (192)
Q Consensus 15 l~a~pLT~eaFAPfG~VI~~ 34 (192)
|+-+.| .|||+|||+|-++
T Consensus 74 I~~e~l-r~aF~pFGevS~a 92 (321)
T KOG0148|consen 74 IDNEKL-REAFAPFGEVSDA 92 (321)
T ss_pred cchHHH-HHHhccccccccc
Confidence 334444 7999999998765
No 12
>PRK13290 ectC L-ectoine synthase; Reviewed
Probab=25.75 E-value=1.4e+02 Score=23.34 Aligned_cols=32 Identities=19% Similarity=0.213 Sum_probs=23.2
Q ss_pred EEEEEeCCeeEEecCCCcCCCcccCCCcccEEEE
Q 029502 131 RVFKIAGPKFLKLNRGTWHAGPLFKADDMDFYNL 164 (192)
Q Consensus 131 rAFi~~~gQgV~y~~GtWHa~pl~~~~~~dF~vl 164 (192)
+.+.+.+|+.+.+.+|.+|. -.- .+...|+++
T Consensus 75 ~~~~L~aGD~i~~~~~~~H~-~~N-~e~~~~l~v 106 (125)
T PRK13290 75 EVHPIRPGTMYALDKHDRHY-LRA-GEDMRLVCV 106 (125)
T ss_pred EEEEeCCCeEEEECCCCcEE-EEc-CCCEEEEEE
Confidence 45788999999999999995 222 245555554
No 13
>KOG3374 consensus Cellular repressor of transcription [Transcription]
Probab=23.21 E-value=78 Score=27.22 Aligned_cols=31 Identities=29% Similarity=0.483 Sum_probs=19.9
Q ss_pred hccCCcceEeeCCCCCCCCCCCceeecCCCeeeEEEEeec
Q 029502 24 SFKEYGQVIEASADGEEFGPQDAQLDLSRGIPRFYVMHLE 63 (192)
Q Consensus 24 aFAPfG~VI~~~~~~~~~~~~~a~~~~~~G~~~f~i~~~~ 63 (192)
.=+|||.||+-++ |.+ .-..|+|.||+..+.
T Consensus 70 kG~Pf~nViS~sD-g~p--------~~gtG~pyFyLt~Ld 100 (210)
T KOG3374|consen 70 KGYPFVNVISISD-GDP--------NNGTGRPYFYLTDLD 100 (210)
T ss_pred cCCccceEEEccC-CCC--------cCCCCceEEEeccCC
Confidence 3479999998763 321 122577888887653
No 14
>PF02311 AraC_binding: AraC-like ligand binding domain; InterPro: IPR003313 This entry defines the arabinose-binding and dimerisation domain of the bacterial gene regulatory protein AraC. The crystal structure of the arabinose-binding and dimerization domain of the Escherichia coli gene regulatory protein AraC was determined in the presence and absence of L-arabinose. The arabinose-bound molecule shows that the protein adopts an unusual fold, binding sugar within a beta barrel and completely burying the arabinose with the amino-terminal arm of the protein. Dimer contacts in the presence of arabinose are mediated by an antiparallel coiled-coil. In the uncomplexed protein, the amino-terminal arm is disordered, uncovering the sugar-binding pocket and allowing it to serve as an oligomerization interface [].; GO: 0006355 regulation of transcription, DNA-dependent; PDB: 1XJA_B 2ARA_A 2AAC_B 2ARC_A.
Probab=21.54 E-value=1.4e+02 Score=21.20 Aligned_cols=37 Identities=11% Similarity=0.228 Sum_probs=23.0
Q ss_pred EEEEEeCCeeEEecCCCcCCCcccC-CCcccEEEEEecC
Q 029502 131 RVFKIAGPKFLKLNRGTWHAGPLFK-ADDMDFYNLELSN 168 (192)
Q Consensus 131 rAFi~~~gQgV~y~~GtWHa~pl~~-~~~~dF~vle~~~ 168 (192)
+-+.+.+|+.+-+.+|..|. .... ++...++++-+..
T Consensus 41 ~~~~l~~g~~~li~p~~~H~-~~~~~~~~~~~~~i~~~~ 78 (136)
T PF02311_consen 41 QEYPLKPGDLFLIPPGQPHS-YYPDSNEPWEYYWIYFSP 78 (136)
T ss_dssp EEEEE-TT-EEEE-TTS-EE-EEE-TTSEEEEEEEEE--
T ss_pred EEEEEECCEEEEecCCccEE-EecCCCCCEEEEEEEECH
Confidence 45899999999999999996 3333 3467777877653
No 15
>COG0662 {ManC} Mannose-6-phosphate isomerase [Carbohydrate transport and metabolism]
Probab=20.68 E-value=3.9e+02 Score=20.35 Aligned_cols=60 Identities=12% Similarity=0.189 Sum_probs=40.6
Q ss_pred eeecCCCCeeeeeeccCCeEEEEEeCCCCCCCCcccCCCCcceeeccCCCcCCCCCcCCeEEEEEeCCeeEEecCCCcCC
Q 029502 71 TITHHASVTQCLGSIGGHVWYLGVAKPSILDSTETEGDMGTNIVRSHCGHFYVPPAIEDVRVFKIAGPKFLKLNRGTWHA 150 (192)
Q Consensus 71 ~lERHp~tSQaFiPl~~~~~lvvVA~~~~~~~~e~~~~~~~~~~~~~~g~~~~~Pdl~~lrAFi~~~gQgV~y~~GtWHa 150 (192)
.++.|....|.|+-+.+.- .|.+. + +.|.+..||.+..-+|++|-
T Consensus 50 ~~~~H~~~dE~~~Vl~G~g-~v~~~--~--------------------------------~~~~v~~gd~~~iP~g~~H~ 94 (127)
T COG0662 50 SLHHHHHRDEHWYVLEGTG-KVTIG--G--------------------------------EEVEVKAGDSVYIPAGTPHR 94 (127)
T ss_pred CcccccCcceEEEEEeeEE-EEEEC--C--------------------------------EEEEecCCCEEEECCCCcEE
Confidence 6788999999998887654 33332 1 45789999999999999994
Q ss_pred CcccCCCcccEEEEEec
Q 029502 151 GPLFKADDMDFYNLELS 167 (192)
Q Consensus 151 ~pl~~~~~~dF~vle~~ 167 (192)
+..........+|..
T Consensus 95 --~~N~G~~~L~liei~ 109 (127)
T COG0662 95 --VRNTGKIPLVLIEVQ 109 (127)
T ss_pred --EEcCCCcceEEEEEe
Confidence 333222444444443
Done!