BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 029503
(192 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3RRW|A Chain A, Crystal Structure Of The Tl29 Protein From Arabidopsis
Thaliana
pdb|3RRW|B Chain B, Crystal Structure Of The Tl29 Protein From Arabidopsis
Thaliana
Length = 268
Score = 327 bits (839), Expect = 2e-90, Method: Compositional matrix adjust.
Identities = 156/192 (81%), Positives = 171/192 (89%)
Query: 1 MNLLEEAKKDIDSYSKGGPISFADLIQYAAQSAVKTTFLASAIRKCGGNEEKGRLLYTAY 60
++L+EE KK+IDS SKGGPIS+AD+IQ A QSAVK T+LASAIRKCGGNEEKG LLYTAY
Sbjct: 77 LSLIEEVKKEIDSISKGGPISYADIIQLAGQSAVKFTYLASAIRKCGGNEEKGNLLYTAY 136
Query: 61 GSNGQWGLFEKQFGRTDAQEPDPEGRVPQWEKATVQEMKDKFSAIGLGPRQLAVMSAFLG 120
GS GQWGLF++ FGR+DA E DPEGRVPQW KATVQE KDKF A+GLGPRQLAV SAFLG
Sbjct: 137 GSAGQWGLFDRNFGRSDATEADPEGRVPQWGKATVQEXKDKFIAVGLGPRQLAVXSAFLG 196
Query: 121 PDQAATEALLATDKDVSPWVQKYQRSRETVSQTDYEVDLITTFTKLSSLGQQINYEAYTY 180
PDQAATE LLATD V+PWVQKYQRSRETVSQTDYEVDLIT FTKLS LGQQIN+EAYTY
Sbjct: 197 PDQAATEQLLATDPQVAPWVQKYQRSRETVSQTDYEVDLITAFTKLSCLGQQINFEAYTY 256
Query: 181 PAQKIELSKLKL 192
P ++I LSKLKL
Sbjct: 257 PVERINLSKLKL 268
>pdb|1APX|A Chain A, Crystal Structure Of Recombinant Ascorbate Peroxidase
pdb|1APX|B Chain B, Crystal Structure Of Recombinant Ascorbate Peroxidase
pdb|1APX|C Chain C, Crystal Structure Of Recombinant Ascorbate Peroxidase
pdb|1APX|D Chain D, Crystal Structure Of Recombinant Ascorbate Peroxidase
Length = 249
Score = 32.3 bits (72), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 25/45 (55%), Gaps = 2/45 (4%)
Query: 74 GRTDAQEPDPEGRVPQWEKATVQEMKDKFS-AIGLGPRQLAVMSA 117
GR D EP PEGR+P K + ++D F A+GL + + +S
Sbjct: 117 GREDKPEPPPEGRLPDATKGS-DHLRDVFGKAMGLSDQDIVALSG 160
>pdb|3ZCY|A Chain A, Ascorbate Peroxidase W41a-h42y Mutant
Length = 249
Score = 32.0 bits (71), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 25/45 (55%), Gaps = 2/45 (4%)
Query: 74 GRTDAQEPDPEGRVPQWEKATVQEMKDKFS-AIGLGPRQLAVMSA 117
GR D EP PEGR+P K + ++D F A+GL + + +S
Sbjct: 117 GREDKPEPPPEGRLPDATKGS-DHLRDVFGKAMGLTDQDIVALSG 160
>pdb|3ZCG|A Chain A, Ascorbate Peroxidase W41a-h42c Mutant
Length = 261
Score = 32.0 bits (71), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 25/44 (56%), Gaps = 2/44 (4%)
Query: 74 GRTDAQEPDPEGRVPQWEKATVQEMKDKFS-AIGLGPRQLAVMS 116
GR D EP PEGR+P K + ++D F A+GL + + +S
Sbjct: 129 GREDKPEPPPEGRLPDATKGS-DHLRDVFGKAMGLTDQDIVALS 171
>pdb|2Y6B|A Chain A, Ascorbate Peroxidase R38k Mutant
Length = 249
Score = 31.6 bits (70), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 25/45 (55%), Gaps = 2/45 (4%)
Query: 74 GRTDAQEPDPEGRVPQWEKATVQEMKDKFS-AIGLGPRQLAVMSA 117
GR D EP PEGR+P K + ++D F A+GL + + +S
Sbjct: 117 GREDKPEPPPEGRLPDATKGS-DHLRDVFGKAMGLTDQDIVALSG 160
>pdb|2Y6A|A Chain A, Ascorbate Peroxidase R38a Mutant
Length = 249
Score = 31.6 bits (70), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 25/45 (55%), Gaps = 2/45 (4%)
Query: 74 GRTDAQEPDPEGRVPQWEKATVQEMKDKFS-AIGLGPRQLAVMSA 117
GR D EP PEGR+P K + ++D F A+GL + + +S
Sbjct: 117 GREDKPEPPPEGRLPDATKGS-DHLRDVFGKAMGLTDQDIVALSG 160
>pdb|3ZCH|A Chain A, Ascorbate Peroxidase W41a-h42m Mutant
Length = 261
Score = 31.6 bits (70), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 25/44 (56%), Gaps = 2/44 (4%)
Query: 74 GRTDAQEPDPEGRVPQWEKATVQEMKDKFS-AIGLGPRQLAVMS 116
GR D EP PEGR+P K + ++D F A+GL + + +S
Sbjct: 129 GREDKPEPPPEGRLPDATKGS-DHLRDVFGKAMGLTDQDIVALS 171
>pdb|2GGN|X Chain X, Conformational Mobility In The Active Site Of A Heme
Peroxidase
pdb|2GHC|X Chain X, Conformational Mobility In The Active Site Of A Heme
Peroxidase
pdb|2GHD|X Chain X, Conformational Mobility In The Active Site Of A Heme
Peroxidase
pdb|2GHE|X Chain X, Conformational Mobility In The Active Site Of A Heme
Peroxidase
pdb|2VCN|A Chain A, Structure Of Isoniazid (Inh) Bound To Cytosolic Soybean
Ascorbate Peroxidase Mutant W41a
pdb|2VNX|X Chain X, Crystal Structure Of Soybean Ascorbate Peroxidase Mutant
W41a After Exposure To A High Dose Of X-Rays
pdb|2VNZ|X Chain X, Crystal Structure Of Dithinonite Reduced Soybean Ascorbate
Peroxidase Mutant W41a.
pdb|2VO2|X Chain X, Crystal Structure Of Soybean Ascorbate Peroxidase Mutant
W41a Subjected To Low Dose X-Rays
pdb|2WD4|A Chain A, Ascorbate Peroxidase As A Heme Oxygenase: W41a Variant
Product With T-Butyl Peroxide
Length = 261
Score = 31.6 bits (70), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 25/44 (56%), Gaps = 2/44 (4%)
Query: 74 GRTDAQEPDPEGRVPQWEKATVQEMKDKFS-AIGLGPRQLAVMS 116
GR D EP PEGR+P K + ++D F A+GL + + +S
Sbjct: 129 GREDKPEPPPEGRLPDATKGS-DHLRDVFGKAMGLTDQDIVALS 171
>pdb|2XIF|A Chain A, The Structure Of Ascorbate Peroxidase Compound Ii
pdb|2XIH|A Chain A, The Structure Of Ascorbate Peroxidase Compound Iii
pdb|2XI6|A Chain A, The Structure Of Ascorbate Peroxidase Compound I
pdb|2XJ6|A Chain A, The Structure Of Ferrous Ascorbate Peroxidase
Length = 249
Score = 31.6 bits (70), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 25/45 (55%), Gaps = 2/45 (4%)
Query: 74 GRTDAQEPDPEGRVPQWEKATVQEMKDKFS-AIGLGPRQLAVMSA 117
GR D EP PEGR+P K + ++D F A+GL + + +S
Sbjct: 117 GREDKPEPPPEGRLPDATKGS-DHLRDVFGKAMGLTDQDIVALSG 160
>pdb|2CL4|X Chain X, Ascorbate Peroxidase R172a Mutant
Length = 261
Score = 31.6 bits (70), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 25/44 (56%), Gaps = 2/44 (4%)
Query: 74 GRTDAQEPDPEGRVPQWEKATVQEMKDKFS-AIGLGPRQLAVMS 116
GR D EP PEGR+P K + ++D F A+GL + + +S
Sbjct: 129 GREDKPEPPPEGRLPDATKGS-DHLRDVFGKAMGLTDQDIVALS 171
>pdb|1OAF|A Chain A, Ascobate Peroxidase From Soybean Cytosol In Complex With
Ascorbate
pdb|1OAG|A Chain A, Ascorbate Peroxidase From Soybean Cytosol
pdb|1V0H|X Chain X, Ascobate Peroxidase From Soybean Cytosol In Complex With
Salicylhydroxamic Acid
pdb|2GHH|X Chain X, Conformational Mobility In The Active Site Of A Heme
Peroxidase
pdb|2GHK|X Chain X, Conformational Mobility In The Active Site Of A Heme
Peroxidase
Length = 261
Score = 31.6 bits (70), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 25/45 (55%), Gaps = 2/45 (4%)
Query: 74 GRTDAQEPDPEGRVPQWEKATVQEMKDKFS-AIGLGPRQLAVMSA 117
GR D EP PEGR+P K + ++D F A+GL + + +S
Sbjct: 129 GREDKPEPPPEGRLPDATKGS-DHLRDVFGKAMGLTDQDIVALSG 172
>pdb|2VCS|A Chain A, Structure Of Isoniazid (Inh) Bound To Cytosolic Soybean
Ascorbate Peroxidase Mutant H42a
Length = 261
Score = 31.6 bits (70), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 25/44 (56%), Gaps = 2/44 (4%)
Query: 74 GRTDAQEPDPEGRVPQWEKATVQEMKDKFS-AIGLGPRQLAVMS 116
GR D EP PEGR+P K + ++D F A+GL + + +S
Sbjct: 129 GREDKPEPPPEGRLPDATKGS-DHLRDVFGKAMGLTDQDIVALS 171
>pdb|2VCF|X Chain X, Structure Of Isoniazid (Inh) Bound To Cytosolic Soybean
Ascorbate Peroxidase
Length = 264
Score = 31.6 bits (70), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 25/45 (55%), Gaps = 2/45 (4%)
Query: 74 GRTDAQEPDPEGRVPQWEKATVQEMKDKFS-AIGLGPRQLAVMSA 117
GR D EP PEGR+P K + ++D F A+GL + + +S
Sbjct: 129 GREDKPEPPPEGRLPDATKGS-DHLRDVFGKAMGLTDQDIVALSG 172
>pdb|3HNG|A Chain A, Crystal Structure Of Vegfr1 In Complex With
N-(4-chlorophenyl)-2-
((pyridin-4-ylmethyl)amino)benzamide
Length = 360
Score = 29.3 bits (64), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 18/41 (43%), Positives = 24/41 (58%), Gaps = 3/41 (7%)
Query: 6 EAKKDIDSYSKGGPISFADLIQYAAQSAVKTTFLASAIRKC 46
E ++D D + K PI+ DLI Y+ Q A FL+S RKC
Sbjct: 183 EEEEDSDGFYKE-PITMEDLISYSFQVARGMEFLSS--RKC 220
>pdb|3Q3U|A Chain A, Trametes Cervina Lignin Peroxidase
Length = 338
Score = 28.5 bits (62), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 34/152 (22%), Positives = 59/152 (38%), Gaps = 35/152 (23%)
Query: 20 ISFADLIQYAAQSAVKTTFLASAIRKCGGNEEKGRLLYTAYGSNGQWGLFEKQFGRTDAQ 79
+SF D +Q+A A C G RL + A GR++
Sbjct: 104 VSFGDFVQFAG---------AVGAANCAGGP---RLQFLA--------------GRSNIS 137
Query: 80 EPDPEGRVPQWEKATVQEMKDKFSAIGLGPRQLAVMSAFLGPDQAATEALLATDKDVSPW 139
+P P+G VP + ++ + + IG P ++ + L A + + TD SP+
Sbjct: 138 QPSPDGLVPD-PTDSADKILARMADIGFSPTEVVHL---LASHSIAAQYEVDTDVAGSPF 193
Query: 140 VQKYQRSRETVSQTDYEVDLITTFTKLSSLGQ 171
S +V T + V+ + T+ + GQ
Sbjct: 194 -----DSTPSVFDTQFFVESLLHGTQFTGSGQ 220
>pdb|3LCD|A Chain A, Inhibitor Bound To A Dfg-In Structure Of The Kinase Domain
Of Csf-1r
Length = 329
Score = 27.7 bits (60), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 19/67 (28%), Positives = 31/67 (46%), Gaps = 3/67 (4%)
Query: 3 LLEEAKKDIDSYSKGGPISFADLIQYAAQSAVKTTFLASAIRKCGGNEEKGRLLYTAYGS 62
L +A+ D+D G P+ DL+ +++Q A FLAS + C + R + G
Sbjct: 141 LRRKAEADLDK-EDGRPLELRDLLHFSSQVAQGMAFLAS--KNCIHRDVAARNVLLTNGH 197
Query: 63 NGQWGLF 69
+ G F
Sbjct: 198 VAKIGDF 204
>pdb|2OGV|A Chain A, Crystal Structure Of The Autoinhibited Human C-Fms Kinase
Domain
Length = 317
Score = 27.7 bits (60), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 19/67 (28%), Positives = 31/67 (46%), Gaps = 3/67 (4%)
Query: 3 LLEEAKKDIDSYSKGGPISFADLIQYAAQSAVKTTFLASAIRKCGGNEEKGRLLYTAYGS 62
L +A+ D+D G P+ DL+ +++Q A FLAS + C + R + G
Sbjct: 133 LRRKAEADLDK-EDGRPLELRDLLHFSSQVAQGMAFLAS--KNCIHRDVAARNVLLTNGH 189
Query: 63 NGQWGLF 69
+ G F
Sbjct: 190 VAKIGDF 196
>pdb|3BD0|A Chain A, Crystal Structure Of Memo, Form Ii
pdb|3BD0|B Chain B, Crystal Structure Of Memo, Form Ii
pdb|3BD0|C Chain C, Crystal Structure Of Memo, Form Ii
pdb|3BD0|D Chain D, Crystal Structure Of Memo, Form Ii
Length = 293
Score = 27.7 bits (60), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 30/123 (24%), Positives = 50/123 (40%), Gaps = 18/123 (14%)
Query: 60 YGSNGQWGLFEKQFGRTDAQEPDPEGRVPQWEKATVQEMKDKFSAIGLGPRQLA------ 113
YG + G+FE+ +TD E E +P KA ++ KD+F+ I + L+
Sbjct: 106 YGELWKTGMFERMSLQTDEDEHSIEMHLPYTAKA-MESHKDEFTIIPVLVGALSESKEQE 164
Query: 114 ---VMSAFLGPDQAATEALLATDKDVSPWVQKYQRSRETVSQTDYEVDLITTFTKLSSLG 170
+ S +L A L D W Q+++ S SQ ++ + L +G
Sbjct: 165 FGKLFSKYL----ADPSNLFVVSSDFCHWGQRFRYSYYDESQG----EIYRSIEHLDKMG 216
Query: 171 QQI 173
I
Sbjct: 217 MSI 219
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.313 0.129 0.369
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,514,720
Number of Sequences: 62578
Number of extensions: 213119
Number of successful extensions: 376
Number of sequences better than 100.0: 22
Number of HSP's better than 100.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 361
Number of HSP's gapped (non-prelim): 22
length of query: 192
length of database: 14,973,337
effective HSP length: 93
effective length of query: 99
effective length of database: 9,153,583
effective search space: 906204717
effective search space used: 906204717
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 49 (23.5 bits)