Query 029503
Match_columns 192
No_of_seqs 137 out of 1151
Neff 5.5
Searched_HMMs 46136
Date Fri Mar 29 13:57:18 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029503.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/029503hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03030 cationic peroxidase; 100.0 1.2E-37 2.5E-42 277.2 12.5 146 1-176 96-313 (324)
2 cd00693 secretory_peroxidase H 100.0 2.5E-37 5.4E-42 272.7 12.0 142 1-176 76-288 (298)
3 PLN02879 L-ascorbate peroxidas 100.0 1.2E-36 2.5E-41 262.9 13.3 134 2-174 80-250 (251)
4 PLN02608 L-ascorbate peroxidas 100.0 9.4E-36 2E-40 261.6 12.0 135 2-175 77-248 (289)
5 cd00691 ascorbate_peroxidase A 100.0 1E-35 2.2E-40 257.2 11.7 134 1-173 75-252 (253)
6 PLN02364 L-ascorbate peroxidas 100.0 2.6E-35 5.6E-40 254.4 12.5 134 1-173 78-249 (250)
7 cd00692 ligninase Ligninase an 100.0 3.3E-34 7.2E-39 255.6 12.6 134 2-172 88-276 (328)
8 cd00314 plant_peroxidase_like 100.0 7.2E-30 1.6E-34 219.0 10.4 132 1-168 64-255 (255)
9 cd00649 catalase_peroxidase_1 100.0 5E-29 1.1E-33 226.9 12.7 144 2-183 117-407 (409)
10 PF00141 peroxidase: Peroxidas 100.0 1.8E-30 4E-35 221.3 2.7 116 2-146 57-230 (230)
11 TIGR00198 cat_per_HPI catalase 99.9 7.7E-28 1.7E-32 231.1 12.2 136 2-175 127-406 (716)
12 PRK15061 catalase/hydroperoxid 99.9 1.9E-25 4E-30 214.2 12.7 138 2-177 129-414 (726)
13 cd08200 catalase_peroxidase_2 99.9 3.2E-25 7E-30 195.1 10.9 138 1-170 78-296 (297)
14 TIGR00198 cat_per_HPI catalase 99.9 1.5E-22 3.2E-27 194.8 11.5 139 1-171 496-710 (716)
15 PRK15061 catalase/hydroperoxid 99.9 4.8E-22 1E-26 190.8 11.3 137 1-170 503-721 (726)
16 cd08201 plant_peroxidase_like_ 99.8 5.9E-20 1.3E-24 159.8 7.0 71 18-117 96-166 (264)
17 COG0376 KatG Catalase (peroxid 99.8 1.4E-18 3.1E-23 162.2 8.8 145 2-171 142-417 (730)
18 COG0376 KatG Catalase (peroxid 99.2 1.1E-11 2.4E-16 116.5 6.9 140 1-170 513-725 (730)
19 PF11895 DUF3415: Domain of un 70.2 3.1 6.7E-05 30.6 1.7 20 155-174 3-22 (80)
20 PRK12787 fliX flagellar assemb 40.7 35 0.00075 27.6 3.3 30 1-34 78-107 (138)
21 PF10768 FliX: Class II flagel 29.7 79 0.0017 25.5 3.7 30 1-34 80-109 (139)
22 PF09533 DUF2380: Predicted li 29.5 1.7E+02 0.0037 24.8 5.8 23 95-117 107-129 (188)
23 COG4950 Uncharacterized protei 28.9 80 0.0017 26.8 3.8 26 92-117 133-158 (193)
24 PF00043 GST_C: Glutathione S- 28.8 39 0.00085 23.3 1.7 18 17-34 52-69 (95)
25 PF11020 DUF2610: Domain of un 24.8 1E+02 0.0022 22.8 3.2 30 3-33 50-79 (82)
26 PF06940 DUF1287: Domain of un 22.1 86 0.0019 26.0 2.7 33 82-114 24-56 (164)
27 PF12637 TSCPD: TSCPD domain; 20.9 1.3E+02 0.0028 22.1 3.3 27 4-30 57-91 (95)
No 1
>PLN03030 cationic peroxidase; Provisional
Probab=100.00 E-value=1.2e-37 Score=277.21 Aligned_cols=146 Identities=22% Similarity=0.391 Sum_probs=129.2
Q ss_pred ChHHHHHHHHHhhcCCCCCccHHHHHHHhHHHHHHHhhHHHHHHHhCCCcccccceecccCCCCCccccccccCCCCCCC
Q 029503 1 MNLLEEAKKDIDSYSKGGPISFADLIQYAAQSAVKTTFLASAIRKCGGNEEKGRLLYTAYGSNGQWGLFEKQFGRTDAQE 80 (192)
Q Consensus 1 l~~id~iK~~~e~~c~~~~VS~ADlialAa~~Av~~~f~~~~i~~~GGp~i~~~~~~~~~g~~~~~~~~~v~~GR~Da~~ 80 (192)
+|+||.||+++|+.| |++|||||||+||+|+|| ..+|||. |+|++||+|+++
T Consensus 96 f~~i~~iK~~~e~~C-Pg~VSCADilalAarDaV---------~~~gGP~------------------~~v~~GRrDg~~ 147 (324)
T PLN03030 96 YDVIDDAKTQLEAAC-PGVVSCADILALAARDSV---------VLTNGLT------------------WPVPTGRRDGRV 147 (324)
T ss_pred HHHHHHHHHHHHhhC-CCcccHHHHHHHHhhccc---------cccCCCc------------------eeeeccccCCCC
Confidence 479999999999999 899999999999999998 8899998 899999999987
Q ss_pred C--CCCCCCCCCcCcCHHHHHHHHHHCCCCcccceeeec-----------C-------C------C--------------
Q 029503 81 P--DPEGRVPQWEKATVQEMKDKFSAIGLGPRQLAVMSA-----------F-------L------G-------------- 120 (192)
Q Consensus 81 ~--~~~g~lP~~~~~s~~~l~~~F~~~Gl~~~elVaLsG-----------F-------~------g-------------- 120 (192)
+ ++.++||. |+.++++|++.|+++||+.+|||+||| | . +
T Consensus 148 s~~~~~~~LP~-p~~~~~~l~~~F~~~Gl~~~DlVaLsGAHTiG~ahC~~f~~Rlynf~~~~~~~Dp~~d~~~~~~L~~~ 226 (324)
T PLN03030 148 SLASDASNLPG-FTDSIDVQKQKFAAKGLNTQDLVTLVGGHTIGTTACQFFRYRLYNFTTTGNGADPSIDASFVPQLQAL 226 (324)
T ss_pred CCcccccCCcC-CCCCHHHHHHHHHHcCCCHHHheeeeeccccceeeeeccccccccccCCCCCCCCchhHHHHHHHhcc
Confidence 6 44458999 899999999999999999999999999 2 0 0
Q ss_pred --------------------------------CCCchhhHhhccCCCcHHHHHHHhhccCccchhhhHHHHHHHHHHHHc
Q 029503 121 --------------------------------PDQAATEALLATDKDVSPWVQKYQRSRETVSQTDYEVDLITTFTKLSS 168 (192)
Q Consensus 121 --------------------------------p~~l~sD~~L~~d~~t~~~v~~ya~~~~~~~~~~f~~~Fa~Am~KL~~ 168 (192)
.++|+|||+|++|++|+++|++||.|+.. .++.|+++|++||+|||+
T Consensus 227 Cp~~~~~~~~~~lD~~Tp~~FDn~Yy~nll~~rGlL~SDq~L~~d~~T~~~V~~~A~~~~~-~~~~F~~~Fa~AmvKMg~ 305 (324)
T PLN03030 227 CPQNGDGSRRIALDTGSSNRFDASFFSNLKNGRGILESDQKLWTDASTRTFVQRFLGVRGL-AGLNFNVEFGRSMVKMSN 305 (324)
T ss_pred CCCCCCCCccccCCCCCCcccccHHHHHHHhcCCCcCCchHhhcCccHHHHHHHHhccccc-chhhhHHHHHHHHHHHcc
Confidence 06899999999999999999999988630 124599999999999999
Q ss_pred CCCCCCCC
Q 029503 169 LGQQINYE 176 (192)
Q Consensus 169 lg~~~~~~ 176 (192)
+||.++.+
T Consensus 306 i~VlTG~~ 313 (324)
T PLN03030 306 IGVKTGTN 313 (324)
T ss_pred CCCCCCCC
Confidence 99988753
No 2
>cd00693 secretory_peroxidase Horseradish peroxidase and related secretory plant peroxidases. Secretory peroxidases belong to class III of the plant heme-dependent peroxidase superfamily. All members of the superfamily share a heme prosthetic group and catalyze a multistep oxidative reaction involving hydrogen peroxide as the electron acceptor. Class III peroxidases are found in the extracellular space or in the vacuole in plants where they have been implicated in hydrogen peroxide detoxification, auxin catabolism and lignin biosynthesis, and stress response. Class III peroxidases contain four conserved disulphide bridges and two conserved calcium binding sites.
Probab=100.00 E-value=2.5e-37 Score=272.67 Aligned_cols=142 Identities=23% Similarity=0.438 Sum_probs=128.7
Q ss_pred ChHHHHHHHHHhhcCCCCCccHHHHHHHhHHHHHHHhhHHHHHHHhCCCcccccceecccCCCCCccccccccCCCCCCC
Q 029503 1 MNLLEEAKKDIDSYSKGGPISFADLIQYAAQSAVKTTFLASAIRKCGGNEEKGRLLYTAYGSNGQWGLFEKQFGRTDAQE 80 (192)
Q Consensus 1 l~~id~iK~~~e~~c~~~~VS~ADlialAa~~Av~~~f~~~~i~~~GGp~i~~~~~~~~~g~~~~~~~~~v~~GR~Da~~ 80 (192)
+++|++||+++|+.| |++|||||||+||+|+|| +.+|||. |+|++||+|+++
T Consensus 76 ~~~i~~iK~~~e~~c-p~~VScADiialAar~av---------~~~GGP~------------------~~v~~GR~D~~~ 127 (298)
T cd00693 76 FDVIDDIKAALEAAC-PGVVSCADILALAARDAV---------VLAGGPS------------------YEVPLGRRDGRV 127 (298)
T ss_pred hHHHHHHHHHHHhhC-CCcccHHHHHHHhhhhce---------eccCCCc------------------ccccCCCcCCcc
Confidence 478999999999999 899999999999999998 8899998 799999999976
Q ss_pred C--CCCCCCCCCcCcCHHHHHHHHHHCCCCcccceeeec------------------CCC--------------------
Q 029503 81 P--DPEGRVPQWEKATVQEMKDKFSAIGLGPRQLAVMSA------------------FLG-------------------- 120 (192)
Q Consensus 81 ~--~~~g~lP~~~~~s~~~l~~~F~~~Gl~~~elVaLsG------------------F~g-------------------- 120 (192)
+ .+.++||. |+.+++++++.|+++||+++|||+|+| |.+
T Consensus 128 s~~~~~~~lP~-p~~~~~~l~~~F~~~G~~~~d~VaL~GaHTiG~~hc~~f~~Rl~~f~g~~~~dp~~~~~~~~~L~~~C 206 (298)
T cd00693 128 SSANDVGNLPS-PFFSVSQLISLFASKGLTVTDLVALSGAHTIGRAHCSSFSDRLYNFSGTGDPDPTLDPAYAAQLRKKC 206 (298)
T ss_pred cCcccccCCCC-cccCHHHHHHHHHHcCCCHHHheeecccceeeeeecccccccccCCCCCCCCCCCccHHHHHHhcCCC
Confidence 5 33468999 899999999999999999999999998 210
Q ss_pred -------------------------------CCCchhhHhhccCCCcHHHHHHHhhccCccchhhhHHHHHHHHHHHHcC
Q 029503 121 -------------------------------PDQAATEALLATDKDVSPWVQKYQRSRETVSQTDYEVDLITTFTKLSSL 169 (192)
Q Consensus 121 -------------------------------p~~l~sD~~L~~d~~t~~~v~~ya~~~~~~~~~~f~~~Fa~Am~KL~~l 169 (192)
.++|+||++|+.|++|+++|+.||.||.. |+++|++||+||+++
T Consensus 207 p~~~~~~~~~~lD~~Tp~~FDn~Yy~~l~~~~glL~SD~~L~~d~~t~~~V~~~A~d~~~-----F~~~Fa~Am~Kl~~l 281 (298)
T cd00693 207 PAGGDDDTLVPLDPGTPNTFDNSYYKNLLAGRGLLTSDQALLSDPRTRAIVNRYAANQDA-----FFRDFAAAMVKMGNI 281 (298)
T ss_pred CCCCCCCccccCCCCCCCccccHHHHHHHhcccCccCCHHhccCccHHHHHHHHhhCHHH-----HHHHHHHHHHHHhhc
Confidence 15899999999999999999999999964 999999999999999
Q ss_pred CCCCCCC
Q 029503 170 GQQINYE 176 (192)
Q Consensus 170 g~~~~~~ 176 (192)
||++..+
T Consensus 282 ~v~tg~~ 288 (298)
T cd00693 282 GVLTGSQ 288 (298)
T ss_pred CCccCCC
Confidence 9988753
No 3
>PLN02879 L-ascorbate peroxidase
Probab=100.00 E-value=1.2e-36 Score=262.94 Aligned_cols=134 Identities=34% Similarity=0.508 Sum_probs=123.0
Q ss_pred hHHHHHHHHHhhcCCCCCccHHHHHHHhHHHHHHHhhHHHHHHHhCCCcccccceecccCCCCCccccccccCCCCCCCC
Q 029503 2 NLLEEAKKDIDSYSKGGPISFADLIQYAAQSAVKTTFLASAIRKCGGNEEKGRLLYTAYGSNGQWGLFEKQFGRTDAQEP 81 (192)
Q Consensus 2 ~~id~iK~~~e~~c~~~~VS~ADlialAa~~Av~~~f~~~~i~~~GGp~i~~~~~~~~~g~~~~~~~~~v~~GR~Da~~~ 81 (192)
++|++||+++ ++|||||||+||+++|| +.+|||. |+|++||+|++++
T Consensus 80 ~~i~~iK~~~------~~VScADilalAa~~AV---------~~~GGP~------------------~~~~~GR~D~~~~ 126 (251)
T PLN02879 80 RLLDPIKELF------PILSYADFYQLAGVVAV---------EITGGPE------------------IPFHPGRLDKVEP 126 (251)
T ss_pred HHHHHHHHHc------CCcCHHHHHHHHHHHHH---------HhcCCCc------------------cCCCCCCCCCCCC
Confidence 6899999998 68999999999999998 8999999 7899999999999
Q ss_pred CCCCCCCCCcCcCHHHHHHHHHHCCCCcccceeeec-------------CCC----------------------CCC--c
Q 029503 82 DPEGRVPQWEKATVQEMKDKFSAIGLGPRQLAVMSA-------------FLG----------------------PDQ--A 124 (192)
Q Consensus 82 ~~~g~lP~~~~~s~~~l~~~F~~~Gl~~~elVaLsG-------------F~g----------------------p~~--l 124 (192)
+++++||. |+.++++|++.|++|||+++|||||+| |.| .++ |
T Consensus 127 ~~~~~lP~-p~~~~~~l~~~F~~~Gl~~~dlVALsGaHTiG~ah~~r~g~~g~~d~tp~~FDN~Yy~~ll~~~~~gll~L 205 (251)
T PLN02879 127 PPEGRLPQ-ATKGVDHLRDVFGRMGLNDKDIVALSGGHTLGRCHKERSGFEGAWTPNPLIFDNSYFKEILSGEKEGLLQL 205 (251)
T ss_pred CcccCCCC-CCCCHHHHHHHHHHcCCCHHHHeeeeccccccccccccccCCCCCCCCccceeHHHHHHHHcCCcCCCccc
Confidence 99999999 899999999999999999999999999 211 133 7
Q ss_pred hhhHhhccCCCcHHHHHHHhhccCccchhhhHHHHHHHHHHHHcCCCCCC
Q 029503 125 ATEALLATDKDVSPWVQKYQRSRETVSQTDYEVDLITTFTKLSSLGQQIN 174 (192)
Q Consensus 125 ~sD~~L~~d~~t~~~v~~ya~~~~~~~~~~f~~~Fa~Am~KL~~lg~~~~ 174 (192)
+||++|+.||+|+++|++||+||.+ |+++|++||+||+++|+..+
T Consensus 206 ~SD~aL~~D~~t~~~V~~~A~d~~~-----F~~~Fa~Am~KL~~lg~~~~ 250 (251)
T PLN02879 206 PTDKALLDDPLFLPFVEKYAADEDA-----FFEDYTEAHLKLSELGFADK 250 (251)
T ss_pred hhhHHHhcCCcHHHHHHHHhhCHHH-----HHHHHHHHHHHHHccCCCCC
Confidence 8999999999999999999999964 99999999999999998754
No 4
>PLN02608 L-ascorbate peroxidase
Probab=100.00 E-value=9.4e-36 Score=261.60 Aligned_cols=135 Identities=30% Similarity=0.466 Sum_probs=123.7
Q ss_pred hHHHHHHHHHhhcCCCCCccHHHHHHHhHHHHHHHhhHHHHHHHhCCCcccccceecccCCCCCccccccccCCCCCCCC
Q 029503 2 NLLEEAKKDIDSYSKGGPISFADLIQYAAQSAVKTTFLASAIRKCGGNEEKGRLLYTAYGSNGQWGLFEKQFGRTDAQEP 81 (192)
Q Consensus 2 ~~id~iK~~~e~~c~~~~VS~ADlialAa~~Av~~~f~~~~i~~~GGp~i~~~~~~~~~g~~~~~~~~~v~~GR~Da~~~ 81 (192)
++|++||+++ ++|||||||+||||+|| +.+|||. |+|++||+|++++
T Consensus 77 ~vid~iK~~~------~~VScADilalAardAV---------~~~GGP~------------------~~v~~GR~D~~~s 123 (289)
T PLN02608 77 DLCEPVKAKH------PKITYADLYQLAGVVAV---------EVTGGPT------------------IDFVPGRKDSNAC 123 (289)
T ss_pred HHHHHHHHHc------CCcCHHHHHHHHHHHHH---------HhcCCCc------------------cCCCCCCCCCCcC
Confidence 6899999997 58999999999999998 8999998 7999999999999
Q ss_pred CCCCCCCCCcCcCHHHHHHHHHHCCCCcccceeeec-------------CCC----------------------CCC--c
Q 029503 82 DPEGRVPQWEKATVQEMKDKFSAIGLGPRQLAVMSA-------------FLG----------------------PDQ--A 124 (192)
Q Consensus 82 ~~~g~lP~~~~~s~~~l~~~F~~~Gl~~~elVaLsG-------------F~g----------------------p~~--l 124 (192)
+++++||. |+.+++++++.|++|||+++|||+|+| |.+ .++ |
T Consensus 124 ~~~~~LP~-p~~~~~~l~~~F~~~Gl~~~D~VaLsGAHTiG~ahc~r~g~~g~~~~Tp~~FDN~Yy~~ll~~~~~gll~L 202 (289)
T PLN02608 124 PEEGRLPD-AKKGAKHLRDVFYRMGLSDKDIVALSGGHTLGRAHPERSGFDGPWTKEPLKFDNSYFVELLKGESEGLLKL 202 (289)
T ss_pred CccCCCcC-CCCCHHHHHHHHHHcCCCHHHHhhhccccccccccccCCCCCCCCCCCCCccChHHHHHHHcCCcCCcccc
Confidence 88899999 899999999999999999999999999 211 134 7
Q ss_pred hhhHhhccCCCcHHHHHHHhhccCccchhhhHHHHHHHHHHHHcCCCCCCC
Q 029503 125 ATEALLATDKDVSPWVQKYQRSRETVSQTDYEVDLITTFTKLSSLGQQINY 175 (192)
Q Consensus 125 ~sD~~L~~d~~t~~~v~~ya~~~~~~~~~~f~~~Fa~Am~KL~~lg~~~~~ 175 (192)
+||++|..|++|+++|+.||.||.. |+++|++||+||+++|+.++.
T Consensus 203 ~SD~~L~~d~~T~~~V~~fA~~~~~-----F~~~Fa~Am~Km~~lgvltg~ 248 (289)
T PLN02608 203 PTDKALLEDPEFRPYVELYAKDEDA-----FFRDYAESHKKLSELGFTPPS 248 (289)
T ss_pred ccCHhhhcChhHHHHHHHHhhCHHH-----HHHHHHHHHHHHHcCCCCCCC
Confidence 9999999999999999999999854 999999999999999997775
No 5
>cd00691 ascorbate_peroxidase Ascorbate peroxidases and cytochrome C peroxidases. Ascorbate peroxidases are a subgroup of heme-dependent peroxidases of the plant superfamily that share a heme prosthetic group and catalyze a multistep oxidative reaction involving hydrogen peroxide as the electron acceptor. Along with related catalase-peroxidases, ascorbate peroxidases belong to class I of the plant superfamily. Ascorbate peroxidases are found in the chloroplasts and/or cytosol of algae and plants, where they have been shown to control the concentration of lethal hydrogen peroxide molecules. The yeast cytochrome c peroxidase is a divergent member of the family; it forms a complex with cytochrome c to catalyze the reduction of hydrogen peroxide to water.
Probab=100.00 E-value=1e-35 Score=257.21 Aligned_cols=134 Identities=31% Similarity=0.538 Sum_probs=122.2
Q ss_pred ChHHHHHHHHHhhcCCCCCccHHHHHHHhHHHHHHHhhHHHHHHHhCCCcccccceecccCCCCCccccccccCCCCCCC
Q 029503 1 MNLLEEAKKDIDSYSKGGPISFADLIQYAAQSAVKTTFLASAIRKCGGNEEKGRLLYTAYGSNGQWGLFEKQFGRTDAQE 80 (192)
Q Consensus 1 l~~id~iK~~~e~~c~~~~VS~ADlialAa~~Av~~~f~~~~i~~~GGp~i~~~~~~~~~g~~~~~~~~~v~~GR~Da~~ 80 (192)
+++|++||+++ ++|||||||+||+|+|| +.+|||. |+|++||+|+++
T Consensus 75 ~~~i~~iK~~~------~~VScADilalAar~Av---------~~~GGP~------------------~~v~~GR~D~~~ 121 (253)
T cd00691 75 RKLLEPIKKKY------PDISYADLWQLAGVVAI---------EEMGGPK------------------IPFRPGRVDASD 121 (253)
T ss_pred HHHHHHHHHHc------CCCCHHHHHHHHHHHHH---------HHcCCCc------------------cCcccCCCCCCc
Confidence 36899999987 48999999999999998 8999998 799999999998
Q ss_pred CC---CCCCCCCCcCcCHHHHHHHHHHCCCCcccceeeec-------------CCC--------------------CC--
Q 029503 81 PD---PEGRVPQWEKATVQEMKDKFSAIGLGPRQLAVMSA-------------FLG--------------------PD-- 122 (192)
Q Consensus 81 ~~---~~g~lP~~~~~s~~~l~~~F~~~Gl~~~elVaLsG-------------F~g--------------------p~-- 122 (192)
++ ++++||. |+.++++|++.|+++||+++|||+|+| |.+ .+
T Consensus 122 s~~~~~~~~lP~-p~~~~~~l~~~F~~~Gls~~d~VaLsGaHTiG~a~c~~~~~~g~~~~tp~~FDn~Yy~~ll~~~g~~ 200 (253)
T cd00691 122 PEECPPEGRLPD-ASKGADHLRDVFYRMGFNDQEIVALSGAHTLGRCHKERSGYDGPWTKNPLKFDNSYFKELLEEDWKL 200 (253)
T ss_pred ccccCcccCCCC-CCCCHHHHHHHHHhcCCCHHHHHHhcccceeecccccCCCCCCCCCCCCCcccHHHHHHHhcCCCcc
Confidence 85 7788999 889999999999999999999999998 111 15
Q ss_pred ------CchhhHhhccCCCcHHHHHHHhhccCccchhhhHHHHHHHHHHHHcCCCCC
Q 029503 123 ------QAATEALLATDKDVSPWVQKYQRSRETVSQTDYEVDLITTFTKLSSLGQQI 173 (192)
Q Consensus 123 ------~l~sD~~L~~d~~t~~~v~~ya~~~~~~~~~~f~~~Fa~Am~KL~~lg~~~ 173 (192)
+|+||++|..|++|+.+|+.|++|+.. |+++|++||+||+++||+|
T Consensus 201 ~~~~~~~L~sD~~L~~d~~t~~~v~~~a~~~~~-----F~~~Fa~Am~Km~~l~v~~ 252 (253)
T cd00691 201 PTPGLLMLPTDKALLEDPKFRPYVELYAKDQDA-----FFKDYAEAHKKLSELGVPF 252 (253)
T ss_pred CcCcceechhhHHHHcCccHHHHHHHHhhCHHH-----HHHHHHHHHHHHHhcCCCC
Confidence 899999999999999999999999854 9999999999999999987
No 6
>PLN02364 L-ascorbate peroxidase 1
Probab=100.00 E-value=2.6e-35 Score=254.42 Aligned_cols=134 Identities=31% Similarity=0.522 Sum_probs=121.0
Q ss_pred ChHHHHHHHHHhhcCCCCCccHHHHHHHhHHHHHHHhhHHHHHHHhCCCcccccceecccCCCCCccccccccCCCCCCC
Q 029503 1 MNLLEEAKKDIDSYSKGGPISFADLIQYAAQSAVKTTFLASAIRKCGGNEEKGRLLYTAYGSNGQWGLFEKQFGRTDAQE 80 (192)
Q Consensus 1 l~~id~iK~~~e~~c~~~~VS~ADlialAa~~Av~~~f~~~~i~~~GGp~i~~~~~~~~~g~~~~~~~~~v~~GR~Da~~ 80 (192)
+++|++||+++ ++|||||||+||||+|| +++|||. |+|++||+|+++
T Consensus 78 ~~~i~~ik~~~------~~VScADilalAardAV---------~~~GGP~------------------~~v~~GR~D~~~ 124 (250)
T PLN02364 78 LRLLDPIREQF------PTISFADFHQLAGVVAV---------EVTGGPD------------------IPFHPGREDKPQ 124 (250)
T ss_pred HHHHHHHHHHc------CCcCHHHHHHHHHHHHH---------HhcCCCe------------------eCCCCCCCCccc
Confidence 36899999998 58999999999999998 8999998 799999999999
Q ss_pred CCCCCCCCCCcCcCHHHHHHHHHH-CCCCcccceeeec-------------CC--------------------C--CCC-
Q 029503 81 PDPEGRVPQWEKATVQEMKDKFSA-IGLGPRQLAVMSA-------------FL--------------------G--PDQ- 123 (192)
Q Consensus 81 ~~~~g~lP~~~~~s~~~l~~~F~~-~Gl~~~elVaLsG-------------F~--------------------g--p~~- 123 (192)
++++++||. |+.++++|++.|++ |||+++|||+|+| |. + .++
T Consensus 125 s~~~~~lP~-p~~~~~~l~~~F~~~~Gl~~~d~VaLsGaHTiG~~hc~r~~~~g~~~~tp~~fDn~Yy~~ll~~~~~gll 203 (250)
T PLN02364 125 PPPEGRLPD-ATKGCDHLRDVFAKQMGLSDKDIVALSGAHTLGRCHKDRSGFEGAWTSNPLIFDNSYFKELLSGEKEGLL 203 (250)
T ss_pred ccccCCCCC-CCcCHHHHHHHHHHhcCCCHHHheeeecceeeccccCCCCCCCCCCCCCCCccchHHHHHHhcCCcCCCc
Confidence 999999999 88999999999996 6999999999999 21 1 244
Q ss_pred -chhhHhhccCCCcHHHHHHHhhccCccchhhhHHHHHHHHHHHHcCCCCC
Q 029503 124 -AATEALLATDKDVSPWVQKYQRSRETVSQTDYEVDLITTFTKLSSLGQQI 173 (192)
Q Consensus 124 -l~sD~~L~~d~~t~~~v~~ya~~~~~~~~~~f~~~Fa~Am~KL~~lg~~~ 173 (192)
|+||++|+.|++|+.+|+.|+.|+. .|+++|++||+||+++|+..
T Consensus 204 ~l~sD~~L~~d~~T~~~v~~~a~~~~-----~F~~~Fa~Am~Km~~lg~~~ 249 (250)
T PLN02364 204 QLVSDKALLDDPVFRPLVEKYAADED-----AFFADYAEAHMKLSELGFAD 249 (250)
T ss_pred cccchHHHccCchHHHHHHHHhhCHH-----HHHHHHHHHHHHHHccCCCC
Confidence 4599999999999999999999985 49999999999999999754
No 7
>cd00692 ligninase Ligninase and other manganese-dependent fungal peroxidases. Ligninases and related extracellular fungal peroxidases belong to class II of the plant heme-dependent peroxidase superfamily. All members of the superfamily share a heme prosthetic group and catalyze a multistep oxidative reaction involving hydrogen peroxide as the electron acceptor. Class II peroxidases are fungal glycoproteins that have been implicated in the oxidative breakdown of lignin, the main cell wall component of woody plants. They contain four conserved disulphide bridges and two conserved calcium binding sites.
Probab=100.00 E-value=3.3e-34 Score=255.62 Aligned_cols=134 Identities=28% Similarity=0.438 Sum_probs=122.6
Q ss_pred hHHHHHHHHHhhcCCCCCccHHHHHHHhHHHHHHHhhHHHHHHH-hCCCcccccceecccCCCCCccccccccCCCCCCC
Q 029503 2 NLLEEAKKDIDSYSKGGPISFADLIQYAAQSAVKTTFLASAIRK-CGGNEEKGRLLYTAYGSNGQWGLFEKQFGRTDAQE 80 (192)
Q Consensus 2 ~~id~iK~~~e~~c~~~~VS~ADlialAa~~Av~~~f~~~~i~~-~GGp~i~~~~~~~~~g~~~~~~~~~v~~GR~Da~~ 80 (192)
++|+.||..+|+.| |||||||+|||++|| +. .|||. |+|++||+|+++
T Consensus 88 ~vvd~lk~~~e~~c----VScADiialAa~~AV---------~~~~GGP~------------------i~v~~GR~D~~~ 136 (328)
T cd00692 88 EIVEALRPFHQKHN----VSMADFIQFAGAVAV---------SNCPGAPR------------------LEFYAGRKDATQ 136 (328)
T ss_pred HHHHHHHHHHHhcC----cCHHHHHHHHHHHHH---------HhcCCCCc------------------ccccCCCCCCCC
Confidence 58999999999997 999999999999998 64 59998 789999999999
Q ss_pred CCCCCCCCCCcCcCHHHHHHHHHHCCCCcccceeeec---CC----------C----------------------C----
Q 029503 81 PDPEGRVPQWEKATVQEMKDKFSAIGLGPRQLAVMSA---FL----------G----------------------P---- 121 (192)
Q Consensus 81 ~~~~g~lP~~~~~s~~~l~~~F~~~Gl~~~elVaLsG---F~----------g----------------------p---- 121 (192)
+.++++||. |+.++++|++.|++|||+++|||+|+| ++ + .
T Consensus 137 s~~~g~LP~-p~~sv~~l~~~F~~~Gf~~~E~VaLsGAHTiG~a~~~Dps~~g~p~D~TP~~FDn~Yf~~ll~~~~~~~g 215 (328)
T cd00692 137 PAPDGLVPE-PFDSVDKILARFADAGFSPDELVALLAAHSVAAQDFVDPSIAGTPFDSTPGVFDTQFFIETLLKGTAFPG 215 (328)
T ss_pred CCcccCCCC-CCCCHHHHHHHHHHcCCCHHHHhhhcccccccccCCCCCCCCCCCCCCCcchhcHHHHHHHHHcCCCCCC
Confidence 999999999 899999999999999999999999999 10 0 0
Q ss_pred ---------------CCchhhHhhccCCCcHHHHHHHhhccCccchhhhHHHHHHHHHHHHcCCCC
Q 029503 122 ---------------DQAATEALLATDKDVSPWVQKYQRSRETVSQTDYEVDLITTFTKLSSLGQQ 172 (192)
Q Consensus 122 ---------------~~l~sD~~L~~d~~t~~~v~~ya~~~~~~~~~~f~~~Fa~Am~KL~~lg~~ 172 (192)
.+|+||++|++|++|+.+|++|++||.+ |+++|++||+||+++|+.
T Consensus 216 ~~~~~~e~~~~~~g~~~L~SD~~L~~D~~T~~~v~~fa~dq~~-----f~~~Fa~Am~KLs~lgv~ 276 (328)
T cd00692 216 SGGNQGEVESPLPGEFRLQSDFLLARDPRTACEWQSFVNNQAK-----MNAAFAAAMLKLSLLGQD 276 (328)
T ss_pred ccccccccccCccccccccchHHHhcCCcHHHHHHHHhcCHHH-----HHHHHHHHHHHHHcCCCC
Confidence 1489999999999999999999999964 999999999999999984
No 8
>cd00314 plant_peroxidase_like Heme-dependent peroxidases similar to plant peroxidases. Along with animal peroxidases, these enzymes belong to a group of peroxidases containing a heme prosthetic group (ferriprotoporphyrin IX), which catalyzes a multistep oxidative reaction involving hydrogen peroxide as the electron acceptor. The plant peroxidase-like superfamily is found in all three kingdoms of life and carries out a variety of biosynthetic and degradative functions. Several sub-families can be identified. Class I includes intracellular peroxidases present in fungi, plants, archaea and bacteria, called catalase-peroxidases, that can exhibit both catalase and broad-spectrum peroxidase activities depending on the steady-state concentration of hydrogen peroxide. Catalase-peroxidases are typically comprised of two homologous domains that probably arose via a single gene duplication event. Class II includes ligninase and other extracellular fungal peroxidases, while class III is comprised
Probab=99.96 E-value=7.2e-30 Score=219.04 Aligned_cols=132 Identities=33% Similarity=0.556 Sum_probs=118.9
Q ss_pred ChHHHHHHHHHhhcCCCCCccHHHHHHHhHHHHHHHhhHHHHHHHh--CCCcccccceecccCCCCCccccccccCCCCC
Q 029503 1 MNLLEEAKKDIDSYSKGGPISFADLIQYAAQSAVKTTFLASAIRKC--GGNEEKGRLLYTAYGSNGQWGLFEKQFGRTDA 78 (192)
Q Consensus 1 l~~id~iK~~~e~~c~~~~VS~ADlialAa~~Av~~~f~~~~i~~~--GGp~i~~~~~~~~~g~~~~~~~~~v~~GR~Da 78 (192)
+++|++||+++|+ |++|||||||++|+++|| +.+ |||. ++|++||+|+
T Consensus 64 ~~~l~~ik~~~~~---~~~vS~ADlialAa~~Av---------~~~~~ggp~------------------~~~~~GR~D~ 113 (255)
T cd00314 64 LRALEPIKSAYDG---GNPVSRADLIALAGAVAV---------ESTFGGGPL------------------IPFRFGRLDA 113 (255)
T ss_pred HHHHHHHHHHcCC---CCcccHHHHHHHHHHHHH---------HHhccCCCe------------------eeeCCCCCCC
Confidence 3689999999987 489999999999999998 888 9998 6899999999
Q ss_pred C-----CCCCCCCCCCCcCcCHHHHHHHHHHCCCCcccceeee-------cC------C---------------------
Q 029503 79 Q-----EPDPEGRVPQWEKATVQEMKDKFSAIGLGPRQLAVMS-------AF------L--------------------- 119 (192)
Q Consensus 79 ~-----~~~~~g~lP~~~~~s~~~l~~~F~~~Gl~~~elVaLs-------GF------~--------------------- 119 (192)
+ .++|.+++|. +..+++++++.|.+|||+++|||||+ |+ .
T Consensus 114 ~~~~~~~p~P~~~~p~-~~~~~~~~~~~F~~~Gl~~~e~VAL~~GaHti~G~~~~~~~~~~~~~~~~~tp~~fDN~yy~~ 192 (255)
T cd00314 114 TEPDLGVPDPEGLLPN-ETSSATELRDKFKRMGLSPSELVALSAGAHTLGGKNHGDLLNYEGSGLWTSTPFTFDNAYFKN 192 (255)
T ss_pred chhhccCCCCCCCCCC-ccchHHHHHHHHHHcCCCHHHHHhhccCCeeccCcccCCCCCcccCCCCCCCCCccchHHHHH
Confidence 8 6788889999 88999999999999999999999999 51 0
Q ss_pred ---CC----------------CCchhhHhhccCCCcHHHHHHHhhccCccchhhhHHHHHHHHHHHHc
Q 029503 120 ---GP----------------DQAATEALLATDKDVSPWVQKYQRSRETVSQTDYEVDLITTFTKLSS 168 (192)
Q Consensus 120 ---gp----------------~~l~sD~~L~~d~~t~~~v~~ya~~~~~~~~~~f~~~Fa~Am~KL~~ 168 (192)
+. ++|+||++|..|++++.+|+.|+.+++. |+++|++||.||++
T Consensus 193 l~~~~~~~~~~~~~~~~~~~~~~l~sD~~L~~d~~t~~~v~~ya~~~~~-----f~~~Fa~a~~Km~~ 255 (255)
T cd00314 193 LLDMNWEWRVGSPDPDGVKGPGLLPSDYALLSDSETRALVERYASDQEK-----FFEDFAKAWIKMVN 255 (255)
T ss_pred HhcCCcccccCCccCCCcccCCCchhhHHHhcCHhHHHHHHHHHhCHHH-----HHHHHHHHHHHHcC
Confidence 01 5899999999999999999999999854 99999999999985
No 9
>cd00649 catalase_peroxidase_1 N-terminal catalytic domain of catalase-peroxidases. This is a subgroup of heme-dependent peroxidases of the plant superfamily that share a heme prosthetic group and catalyze a multistep oxidative reaction involving hydrogen peroxide as the electron acceptor. Catalase-peroxidases can exhibit both catalase and broad-spectrum peroxidase activities depending on the steady-state concentration of hydrogen peroxide. These enzymes are found in many archaeal and bacterial organisms, where they neutralize potentially lethal hydrogen peroxide molecules generated during photosynthesis or stationary phase. Along with related intracellular fungal and plant peroxidases, catalase-peroxidases belong to class I of the plant peroxidase superfamily. Unlike the eukaryotic enzymes, they are typically comprised of two homologous domains that probably arose via a single gene duplication event. The heme binding motif is present only in the N-terminal domain; the function of the C
Probab=99.96 E-value=5e-29 Score=226.88 Aligned_cols=144 Identities=23% Similarity=0.385 Sum_probs=123.0
Q ss_pred hHHHHHHHHHhhcCCCCCccHHHHHHHhHHHHHHHhhHHHHHHHhCCCcccccceecccCCCCCccccccccCCCCCCCC
Q 029503 2 NLLEEAKKDIDSYSKGGPISFADLIQYAAQSAVKTTFLASAIRKCGGNEEKGRLLYTAYGSNGQWGLFEKQFGRTDAQEP 81 (192)
Q Consensus 2 ~~id~iK~~~e~~c~~~~VS~ADlialAa~~Av~~~f~~~~i~~~GGp~i~~~~~~~~~g~~~~~~~~~v~~GR~Da~~~ 81 (192)
++|++||+++ +..|||||||+||+.+|| +.+|||. +++..||.|++.+
T Consensus 117 ~~L~pik~k~-----~~~iS~ADL~~LaG~~Ai---------E~~Ggp~------------------ipf~~GR~Da~~~ 164 (409)
T cd00649 117 RLLWPIKQKY-----GNKISWADLMILAGNVAL---------ESMGFKT------------------FGFAGGREDVWEP 164 (409)
T ss_pred HHHHHHHHHc-----CCCccHHHHHHHHHHHHH---------HHcCCCc------------------ccccCCCCccCCC
Confidence 5789999998 567999999999999998 9999998 4789999998643
Q ss_pred --------------------------------------CCCC--CCCCCcCcCHHHHHHHHHHCCCCcccceeee-c---
Q 029503 82 --------------------------------------DPEG--RVPQWEKATVQEMKDKFSAIGLGPRQLAVMS-A--- 117 (192)
Q Consensus 82 --------------------------------------~~~g--~lP~~~~~s~~~l~~~F~~~Gl~~~elVaLs-G--- 117 (192)
+|+| .+|+ |..++.+|++.|.+||||++|||||+ |
T Consensus 165 ~~~v~wg~~~~~~~~~~~~~~~~l~~pl~a~~mgliyv~Pegp~gLPd-P~~sa~~LR~~F~RmGlnd~E~VAL~sGAHT 243 (409)
T cd00649 165 DEDVYWGPEKEWLADKRYSGDRDLENPLAAVQMGLIYVNPEGPDGNPD-PLAAAKDIRETFARMAMNDEETVALIAGGHT 243 (409)
T ss_pred ccccccCcchhcccccccccchhhccchhhhhccccccCCCCCCCCCC-CccCHHHHHHHHHHcCCCHHHHeeeccCCcc
Confidence 2566 6999 89999999999999999999999995 5
Q ss_pred --------C-------------------------------------C---------------------------------
Q 029503 118 --------F-------------------------------------L--------------------------------- 119 (192)
Q Consensus 118 --------F-------------------------------------~--------------------------------- 119 (192)
| .
T Consensus 244 iGkaHc~~~~~rlg~dP~~~~~~~~gLgw~~~Cp~g~g~~t~~sglDG~Wt~tP~~FDN~YF~nLl~~eW~~~~~p~g~~ 323 (409)
T cd00649 244 FGKTHGAGPASHVGPEPEAAPIEQQGLGWKNSYGTGKGKDTITSGLEGAWTPTPTKWDNNYLKNLFGYEWELTKSPAGAW 323 (409)
T ss_pred eeecCcccccccCCCCCCcCHHHHHhhcccccCCCCCCCCCccccCCCCCCCCcchhhHHHHHHHHhccceeccCCCCcc
Confidence 1 0
Q ss_pred -----------------------CCCCchhhHhhccCCCcHHHHHHHhhccCccchhhhHHHHHHHHHHH--HcCCCCCC
Q 029503 120 -----------------------GPDQAATEALLATDKDVSPWVQKYQRSRETVSQTDYEVDLITTFTKL--SSLGQQIN 174 (192)
Q Consensus 120 -----------------------gp~~l~sD~~L~~d~~t~~~v~~ya~~~~~~~~~~f~~~Fa~Am~KL--~~lg~~~~ 174 (192)
++++|+||++|..||+++.+|++|+.|++. ||++|++||.|| ..+|++..
T Consensus 324 Q~~~~~~~~~~~~~d~~~~~~~~~~gmL~SD~aL~~Dp~tr~iV~~yA~d~~~-----Ff~dFA~A~~KL~hrdmgp~~~ 398 (409)
T cd00649 324 QWVPKNAAGENTVPDAHDPSKKHAPMMLTTDLALRFDPEYEKISRRFLENPDE-----FADAFAKAWFKLTHRDMGPKSR 398 (409)
T ss_pred cccccCccccccCCCccccccccCcccchhhHhhhcCccHHHHHHHHhcCHHH-----HHHHHHHHHHHHccccCCchhh
Confidence 015789999999999999999999999965 999999999999 58888877
Q ss_pred CCcccCccc
Q 029503 175 YEAYTYPAQ 183 (192)
Q Consensus 175 ~~~~~~~~~ 183 (192)
+.-..-|..
T Consensus 399 ~~g~~~p~~ 407 (409)
T cd00649 399 YLGPEVPEE 407 (409)
T ss_pred hcCCCCCcC
Confidence 765555543
No 10
>PF00141 peroxidase: Peroxidase; InterPro: IPR002016 Peroxidases are haem-containing enzymes that use hydrogen peroxide as the electron acceptor to catalyse a number of oxidative reactions. Most haem peroxidases follow the reaction scheme: Fe3+ + H2O2 --> [Fe4+=O]R' (Compound I) + H2O [Fe4+=O]R' + substrate --> [Fe4+=O]R (Compound II) + oxidised substrate [Fe4+=O]R + substrate --> Fe3+ + H2O + oxidised substrate In this mechanism, the enzyme reacts with one equivalent of H2O2 to give [Fe4+=O]R' (compound I). This is a two-electron oxidation/reduction reaction where H2O2 is reduced to water and the enzyme is oxidised. One oxidising equivalent resides on iron, giving the oxyferryl [] intermediate, while in many peroxidases the porphyrin (R) is oxidised to the porphyrin pi-cation radical (R'). Compound I then oxidises an organic substrate to give a substrate radical []. Haem peroxidases include two superfamilies: one found in bacteria, fungi, plants and the second found in animals. The first one can be viewed as consisting of 3 major classes []. Class I, the intracellular peroxidases, includes: yeast cytochrome c peroxidase (CCP), a soluble protein found in the mitochondrial electron transport chain, where it probably protects against toxic peroxides; ascorbate peroxidase (AP), the main enzyme responsible for hydrogen peroxide removal in chloroplasts and cytosol of higher plants; and bacterial catalase- peroxidases, exhibiting both peroxidase and catalase activities. It is thought that catalase-peroxidase provides protection to cells under oxidative stress []. Class II consists of secretory fungal peroxidases: ligninases, or lignin peroxidases (LiPs), and manganese-dependent peroxidases (MnPs). These are monomeric glycoproteins involved in the degradation of lignin. In MnP, Mn2+ serves as the reducing substrate []. Class II proteins contain four conserved disulphide bridges and two conserved calcium-binding sites. Class III consists of the secretory plant peroxidases, which have multiple tissue-specific functions: e.g., removal of hydrogen peroxide from chloroplasts and cytosol; oxidation of toxic compounds; biosynthesis of the cell wall; defence responses towards wounding; indole-3-acetic acid (IAA) catabolism; ethylene biosynthesis; and so on. Class III proteins are also monomeric glycoproteins, containing four conserved disulphide bridges and two calcium ions, although the placement of the disulphides differs from class II enzymes. The crystal structures of a number of these proteins show that they share the same architecture - two all-alpha domains between which the haem group is embedded. ; GO: 0004601 peroxidase activity, 0020037 heme binding, 0006979 response to oxidative stress, 0055114 oxidation-reduction process; PDB: 1QPA_B 2DV2_A 2B2R_B 1MWV_B 2FXJ_A 2FXG_A 2B2O_B 1X7U_B 2B2Q_A 2FXH_A ....
Probab=99.96 E-value=1.8e-30 Score=221.32 Aligned_cols=116 Identities=27% Similarity=0.543 Sum_probs=101.6
Q ss_pred hHHHHHHHHHhhcCCCCCccHHHHHHHhHHHHHHHhhHHHHHHHhCCCcccccceecccCCCCCccccccccCCCCCCCC
Q 029503 2 NLLEEAKKDIDSYSKGGPISFADLIQYAAQSAVKTTFLASAIRKCGGNEEKGRLLYTAYGSNGQWGLFEKQFGRTDAQEP 81 (192)
Q Consensus 2 ~~id~iK~~~e~~c~~~~VS~ADlialAa~~Av~~~f~~~~i~~~GGp~i~~~~~~~~~g~~~~~~~~~v~~GR~Da~~~ 81 (192)
++|++||+++|+.| |++|||||||+||+++|| +.+|||. |+|++||+|++++
T Consensus 57 ~~i~~ik~~~~~~c-p~~VS~ADiialAa~~av---------~~~GGP~------------------~~v~~GR~D~~~s 108 (230)
T PF00141_consen 57 DVIDPIKAKLEAAC-PGVVSCADIIALAARDAV---------ELCGGPR------------------IPVPLGRRDGTVS 108 (230)
T ss_dssp HHHHHHHHHHCHHS-TTTS-HHHHHHHHHHHHH---------HHTTGGH------------------SHBEB-EBB-SSG
T ss_pred echhhHHhhhcccc-cCCCCHHHHHHHHhhhcc---------ccccccc------------------ccccccccccccc
Confidence 78999999999999 889999999999999998 8999997 7999999999999
Q ss_pred CCCC--CCCCCcCcCHHHHHHHHHHCCCCcccceeeec-----------CC-----------------------------
Q 029503 82 DPEG--RVPQWEKATVQEMKDKFSAIGLGPRQLAVMSA-----------FL----------------------------- 119 (192)
Q Consensus 82 ~~~g--~lP~~~~~s~~~l~~~F~~~Gl~~~elVaLsG-----------F~----------------------------- 119 (192)
++.+ +||. |..++++|++.|++|||+++|||||+| |.
T Consensus 109 ~~~~~~~lP~-p~~~~~~l~~~F~~~Gls~~e~VaLsGaHTiG~~~c~~f~rl~~~~dp~~d~~~~~~~C~~~~~~~~~~ 187 (230)
T PF00141_consen 109 SPSGASNLPS-PTDSVDQLLAFFARKGLSAEEMVALSGAHTIGRAHCSSFSRLYFPPDPTMDPGYAGQNCNSGGDNGVPL 187 (230)
T ss_dssp GHHHHHHSST-TTSHHHHHHHHHHHTT--HHHHHHHHGGGGSTEESGGCTGGTSCSSGTTSTHHHHHHSSSTSGCTCEES
T ss_pred cccccccccc-cccccchhhhhhhccccchhhhcceecccccccceeccccccccccccccccccceeccCCCccccccc
Confidence 7655 4999 899999999999999999999999999 22
Q ss_pred -CC---------------CCchhhHhhccCCCcHHHHHHHhhc
Q 029503 120 -GP---------------DQAATEALLATDKDVSPWVQKYQRS 146 (192)
Q Consensus 120 -gp---------------~~l~sD~~L~~d~~t~~~v~~ya~~ 146 (192)
.| ++|+||++|+.|++|+++|++||+|
T Consensus 188 dtp~~fDN~Yy~~ll~~~gll~SD~~L~~d~~t~~~V~~yA~d 230 (230)
T PF00141_consen 188 DTPTVFDNSYYKNLLNGRGLLPSDQALLNDPETRPIVERYAQD 230 (230)
T ss_dssp SSTTS-SSHHHHHHHHTEEEEHHHHHHHHSTTHHHHHHHHHHT
T ss_pred cCCCcchhHHHHHHhcCCCcCHHHHHHhcCHHHHHHHHHHhcC
Confidence 12 5799999999999999999999986
No 11
>TIGR00198 cat_per_HPI catalase/peroxidase HPI. Note that the translation PID:g296476 from accession X71420 from Rhodobacter capsulatus B10 contains extensive frameshift differences from the rest of the orthologous family.
Probab=99.95 E-value=7.7e-28 Score=231.09 Aligned_cols=136 Identities=26% Similarity=0.401 Sum_probs=114.8
Q ss_pred hHHHHHHHHHhhcCCCCCccHHHHHHHhHHHHHHHhhHHHHHHHhCCCcccccceecccCCCCCccccccccCCCCCCCC
Q 029503 2 NLLEEAKKDIDSYSKGGPISFADLIQYAAQSAVKTTFLASAIRKCGGNEEKGRLLYTAYGSNGQWGLFEKQFGRTDAQEP 81 (192)
Q Consensus 2 ~~id~iK~~~e~~c~~~~VS~ADlialAa~~Av~~~f~~~~i~~~GGp~i~~~~~~~~~g~~~~~~~~~v~~GR~Da~~~ 81 (192)
.+|++||+++ |++|||||||+|||++|| +.+|||. |+|..||+|+..+
T Consensus 127 ~lL~pIk~ky-----p~~VS~ADLivLAG~vAV---------E~~Ggp~------------------i~f~~GR~D~~~~ 174 (716)
T TIGR00198 127 RLLWPIKKKY-----GNKLSWADLIILAGTVAY---------ESMGLKV------------------FGFAGGREDIWEP 174 (716)
T ss_pred HHHHHHHHHC-----CCceeHHHHHHHHHHHHH---------HHhCCCc------------------cCCCCCCCCCCCc
Confidence 5678888875 789999999999999998 9999997 6899999998432
Q ss_pred -------------------------------------CCCC--CCCCCcCcCHHHHHHHHHHCCCCcccceeee-c----
Q 029503 82 -------------------------------------DPEG--RVPQWEKATVQEMKDKFSAIGLGPRQLAVMS-A---- 117 (192)
Q Consensus 82 -------------------------------------~~~g--~lP~~~~~s~~~l~~~F~~~Gl~~~elVaLs-G---- 117 (192)
+|++ .+|+ |..++++|++.|.+||||++|||||+ |
T Consensus 175 ~~d~~~g~e~~~l~~~~~~~~~l~~p~a~~~~Gliyvnpeg~~~lPd-P~~sa~~Lrd~F~rmGLnd~EmVALiaGaHTi 253 (716)
T TIGR00198 175 DKDIYWGAEKEWLTSSREDRESLENPLAATEMGLIYVNPEGPDGHPD-PLCTAQDIRTTFARMGMNDEETVALIAGGHTV 253 (716)
T ss_pred ccccccccccchhhccccccccccccchhhhccccccCcccccCCCC-CCCCHHHHHHHHHHcCCChHHHeeeecCceec
Confidence 1344 5899 88999999999999999999999996 4
Q ss_pred -------CC-------------------------------------C---------------------------------
Q 029503 118 -------FL-------------------------------------G--------------------------------- 120 (192)
Q Consensus 118 -------F~-------------------------------------g--------------------------------- 120 (192)
|. |
T Consensus 254 GkaHc~s~~~rlg~dP~~~~~~~~gLg~~c~~~~g~g~dt~~sglDG~wT~TP~~FDN~YF~nLl~~~w~~~~s~~g~~q 333 (716)
T TIGR00198 254 GKCHGAGPAELIGPDPEGAPIEEQGLGWHNQYGKGVGRDTMTSGLEVAWTTTPTQWDNGYFYMLFNYEWELKKSPAGAWQ 333 (716)
T ss_pred cccCCCcccccCCCCCCcCHHHHHHhcccCCCCCCCCCCcccccCCCCCCCCCCccchHHHHHHhcCCceeeecCCCCce
Confidence 00 0
Q ss_pred ---------------------CCCchhhHhhccCCCcHHHHHHHhhccCccchhhhHHHHHHHHHHHHc--CCCCCCC
Q 029503 121 ---------------------PDQAATEALLATDKDVSPWVQKYQRSRETVSQTDYEVDLITTFTKLSS--LGQQINY 175 (192)
Q Consensus 121 ---------------------p~~l~sD~~L~~d~~t~~~v~~ya~~~~~~~~~~f~~~Fa~Am~KL~~--lg~~~~~ 175 (192)
+++|+||++|..||+++.+|+.|+.|++. |+++|++||.||++ +|++-.+
T Consensus 334 ~~~~~~~~~~p~~~~~~~~~~~~mL~SDlaL~~Dp~~r~iVe~yA~d~~~-----F~~dFA~Aw~KL~~~d~gp~~~y 406 (716)
T TIGR00198 334 WEAVDAPEIIPDVEDPNKKHNPIMLDADLALRFDPEFRKISRRFLREPDY-----FAEAFAKAWFKLTHRDMGPKSRY 406 (716)
T ss_pred eeecccccccccccccccccccCccchhHHhccCccHHHHHHHHhcCHHH-----HHHHHHHHHHHHcccccCchhhh
Confidence 24689999999999999999999999864 99999999999994 5654433
No 12
>PRK15061 catalase/hydroperoxidase HPI(I); Provisional
Probab=99.93 E-value=1.9e-25 Score=214.19 Aligned_cols=138 Identities=24% Similarity=0.387 Sum_probs=113.6
Q ss_pred hHHHHHHHHHhhcCCCCCccHHHHHHHhHHHHHHHhhHHHHHHHhCCCcccccceecccCCCCCccccccccCCCCCCCC
Q 029503 2 NLLEEAKKDIDSYSKGGPISFADLIQYAAQSAVKTTFLASAIRKCGGNEEKGRLLYTAYGSNGQWGLFEKQFGRTDAQEP 81 (192)
Q Consensus 2 ~~id~iK~~~e~~c~~~~VS~ADlialAa~~Av~~~f~~~~i~~~GGp~i~~~~~~~~~g~~~~~~~~~v~~GR~Da~~~ 81 (192)
++|++||+++ +..|||||||+||+.+|| |.+|||.| ++..||.|+..+
T Consensus 129 ~~L~pik~ky-----~~~iS~ADLi~LaG~vAi---------E~~Ggp~i------------------~f~~GR~D~~~~ 176 (726)
T PRK15061 129 RLLWPIKQKY-----GNKISWADLMILAGNVAL---------ESMGFKTF------------------GFAGGREDVWEP 176 (726)
T ss_pred HHHHHHHHHh-----CCCccHHHHHHHHHHHHH---------HHcCCCcc------------------CcCCCCCCCcCC
Confidence 5789999999 678999999999999998 99999985 556666665322
Q ss_pred ---------------------------------------CCCCC--CCCCcCcCHHHHHHHHHHCCCCcccceeee-c--
Q 029503 82 ---------------------------------------DPEGR--VPQWEKATVQEMKDKFSAIGLGPRQLAVMS-A-- 117 (192)
Q Consensus 82 ---------------------------------------~~~g~--lP~~~~~s~~~l~~~F~~~Gl~~~elVaLs-G-- 117 (192)
+|+|. +|+ |..++.+|++.|.+||||++|||||+ |
T Consensus 177 ~~~v~wg~e~~~l~~~~r~~~~~~l~~pl~a~~mgliyvnpegp~glPd-P~~sa~~lR~tF~RMGmnDeEtVALiaGgH 255 (726)
T PRK15061 177 EEDVYWGPEKEWLGGDERYSGERDLENPLAAVQMGLIYVNPEGPNGNPD-PLAAARDIRETFARMAMNDEETVALIAGGH 255 (726)
T ss_pred ccccccCccccccccccccccccccccchhhhhccceecCCCCCCCCCC-cccCHHHHHHHHHHcCCCHHHheeeccCCc
Confidence 23443 788 88999999999999999999999996 4
Q ss_pred ---------C-------------------------------------CC-------------------------------
Q 029503 118 ---------F-------------------------------------LG------------------------------- 120 (192)
Q Consensus 118 ---------F-------------------------------------~g------------------------------- 120 (192)
| .|
T Consensus 256 T~GkaHca~~~~rlgpdP~~a~~~~qgLgw~~~c~~g~g~dt~tsGldG~Wt~tPt~fDN~YF~nLl~~~W~~~~sp~G~ 335 (726)
T PRK15061 256 TFGKTHGAGDASHVGPEPEAAPIEEQGLGWKNSYGSGKGADTITSGLEGAWTTTPTQWDNGYFENLFGYEWELTKSPAGA 335 (726)
T ss_pred eeeeCCCcCcccccCCCCCcCHHHHHhccccccCCCCCCCCCccccCCCCCCCCcchhhHHHHHHHhhCcceeccCCCcc
Confidence 1 00
Q ss_pred -------------------------CCCchhhHhhccCCCcHHHHHHHhhccCccchhhhHHHHHHHHHHHHc--CCCCC
Q 029503 121 -------------------------PDQAATEALLATDKDVSPWVQKYQRSRETVSQTDYEVDLITTFTKLSS--LGQQI 173 (192)
Q Consensus 121 -------------------------p~~l~sD~~L~~d~~t~~~v~~ya~~~~~~~~~~f~~~Fa~Am~KL~~--lg~~~ 173 (192)
++||+||++|..||+++.+|++|+.|++. |+++|++||.||+. +|++.
T Consensus 336 ~qw~~~~~~~~~~~pd~~~~~~~~~~~MLtSD~AL~~DP~~r~iV~~fA~d~~~-----F~~~FA~A~~KL~hrdmgp~~ 410 (726)
T PRK15061 336 WQWVPKDGAAEDTVPDAHDPSKKHAPTMLTTDLALRFDPEYEKISRRFLENPEE-----FADAFARAWFKLTHRDMGPKS 410 (726)
T ss_pred ccccccCccccccCCcccccccccCcccccccHHhhcCCcHHHHHHHHhcCHHH-----HHHHHHHHHHHHcccCCCchh
Confidence 15789999999999999999999999965 99999999999965 55555
Q ss_pred CCCc
Q 029503 174 NYEA 177 (192)
Q Consensus 174 ~~~~ 177 (192)
.+.-
T Consensus 411 ry~g 414 (726)
T PRK15061 411 RYLG 414 (726)
T ss_pred hhcC
Confidence 5443
No 13
>cd08200 catalase_peroxidase_2 C-terminal non-catalytic domain of catalase-peroxidases. This is a subgroup of heme-dependent peroxidases of the plant superfamily that share a heme prosthetic group and catalyze a multistep oxidative reaction involving hydrogen peroxide as the electron acceptor. Catalase-peroxidases can exhibit both catalase and broad-spectrum peroxidase activities depending on the steady-state concentration of hydrogen peroxide. These enzymes are found in many archaeal and bacterial organisms where they neutralize potentially lethal hydrogen peroxide molecules generated during photosynthesis or stationary phase. Along with related intracellular fungal and plant peroxidases, catalase-peroxidases belong to plant peroxidase superfamily. Unlike the eukaryotic enzymes, they are typically comprised of two homologous domains that probably arose via a single gene duplication event. The heme binding motif is present only in the N-terminal domain; the function of the C-terminal do
Probab=99.92 E-value=3.2e-25 Score=195.07 Aligned_cols=138 Identities=23% Similarity=0.352 Sum_probs=108.9
Q ss_pred ChHHHHHHHHHhhc-CCCCCccHHHHHHHhHHHHHHHhhHHHHHHHhCC-----CcccccceecccCCCCCccccccccC
Q 029503 1 MNLLEEAKKDIDSY-SKGGPISFADLIQYAAQSAVKTTFLASAIRKCGG-----NEEKGRLLYTAYGSNGQWGLFEKQFG 74 (192)
Q Consensus 1 l~~id~iK~~~e~~-c~~~~VS~ADlialAa~~Av~~~f~~~~i~~~GG-----p~i~~~~~~~~~g~~~~~~~~~v~~G 74 (192)
+++|++||+++... .+...||+||||+||+.+|| |.+|| |. +++..|
T Consensus 78 ~~~Le~ik~~~~~~~~~~~~vS~ADLivLaG~vAi---------E~agg~ag~~p~------------------Ipf~pG 130 (297)
T cd08200 78 LAVLEGIQKEFNESQSGGKKVSLADLIVLGGCAAV---------EKAAKDAGVDIK------------------VPFTPG 130 (297)
T ss_pred HHHHHHHHHHhcccccCCccccHHHHHHHHhHHHH---------HHHHhccCCCce------------------eccCCC
Confidence 36789999999422 11237999999999999998 88888 77 589999
Q ss_pred CCCCCCC--CCCC---CCCCC-----------cCcCHHHHHHHHHHCCCCcccceeeec------------CCCC-----
Q 029503 75 RTDAQEP--DPEG---RVPQW-----------EKATVQEMKDKFSAIGLGPRQLAVMSA------------FLGP----- 121 (192)
Q Consensus 75 R~Da~~~--~~~g---~lP~~-----------~~~s~~~l~~~F~~~Gl~~~elVaLsG------------F~gp----- 121 (192)
|.|++.+ ++++ ++|.. +....+.|++.|.+||||++|||||+| +.|+
T Consensus 131 R~Da~~~~td~~sf~~l~P~adg~rny~~~~~~~~~~~~Lrd~f~rlglsd~EmvaL~Gg~r~lG~~~~~s~~G~wT~~p 210 (297)
T cd08200 131 RTDATQEQTDVESFEVLEPKADGFRNYLKKGYRVPPEEMLVDKAQLLTLTAPEMTVLVGGLRVLGANYGGSKHGVFTDRP 210 (297)
T ss_pred CCCcccCCCCcccccccCCCCcccccccccCCCCCHHHHHHHHHHhCCCChHHHhheecchhhcccCCCCCCCCCCcCCC
Confidence 9999865 2222 34531 112346799999999999999999999 0010
Q ss_pred ----------------------------------------CCchhhHhhccCCCcHHHHHHHhhc--cCccchhhhHHHH
Q 029503 122 ----------------------------------------DQAATEALLATDKDVSPWVQKYQRS--RETVSQTDYEVDL 159 (192)
Q Consensus 122 ----------------------------------------~~l~sD~~L~~d~~t~~~v~~ya~~--~~~~~~~~f~~~F 159 (192)
.++++|.+|.+|++++++|+.||+| +++ ||+||
T Consensus 211 ~~f~N~fF~nLLd~~~~W~~~~~~~~~~~~~dr~~g~~~~~~t~~Dl~l~sd~~~R~~ve~YA~dd~~~~-----F~~DF 285 (297)
T cd08200 211 GVLTNDFFVNLLDMSTEWKPADEDDGLFEGRDRKTGEVKWTATRVDLVFGSNSELRAVAEVYASDDAQEK-----FVKDF 285 (297)
T ss_pred CccccHHHHHHhcccceeeecCCCCCceeeccCCCCceeeccChhhhhhccCHHHHHHHHHHhcccchhH-----HHHHH
Confidence 1378999999999999999999998 654 99999
Q ss_pred HHHHHHHHcCC
Q 029503 160 ITTFTKLSSLG 170 (192)
Q Consensus 160 a~Am~KL~~lg 170 (192)
++||.||+++.
T Consensus 286 ~~A~~Klmeld 296 (297)
T cd08200 286 VAAWTKVMNLD 296 (297)
T ss_pred HHHHHHHHhcC
Confidence 99999999874
No 14
>TIGR00198 cat_per_HPI catalase/peroxidase HPI. Note that the translation PID:g296476 from accession X71420 from Rhodobacter capsulatus B10 contains extensive frameshift differences from the rest of the orthologous family.
Probab=99.88 E-value=1.5e-22 Score=194.82 Aligned_cols=139 Identities=22% Similarity=0.342 Sum_probs=109.6
Q ss_pred ChHHHHHHHHHhhcCCCCCccHHHHHHHhHHHHHHHhhHHHHHHHh---CCCcccccceecccCCCCCccccccccCCCC
Q 029503 1 MNLLEEAKKDIDSYSKGGPISFADLIQYAAQSAVKTTFLASAIRKC---GGNEEKGRLLYTAYGSNGQWGLFEKQFGRTD 77 (192)
Q Consensus 1 l~~id~iK~~~e~~c~~~~VS~ADlialAa~~Av~~~f~~~~i~~~---GGp~i~~~~~~~~~g~~~~~~~~~v~~GR~D 77 (192)
+++|++||+++. ...||+||||+||+.+|| |.+ |||.+. +|+..||.|
T Consensus 496 l~~Le~Ik~~f~----~~~vS~ADLivLaG~vAV---------E~aa~~gG~~~~----------------Vpf~pGR~D 546 (716)
T TIGR00198 496 LAVLEKIQAEFA----KGPVSLADLIVLGGGAAV---------EKAALDAGISVN----------------VPFLPGRVD 546 (716)
T ss_pred HHHHHHHHHHcC----CCcccHHHHHHHHHHHHH---------HHHHHhCCCCcc----------------cCcCCCCCc
Confidence 468999999992 137999999999999999 555 998654 688999999
Q ss_pred CCCC--CCCCCCCCCc--------------CcCHHHHHHHHHHCCCCcccceeeec------------CCCC--------
Q 029503 78 AQEP--DPEGRVPQWE--------------KATVQEMKDKFSAIGLGPRQLAVMSA------------FLGP-------- 121 (192)
Q Consensus 78 a~~~--~~~g~lP~~~--------------~~s~~~l~~~F~~~Gl~~~elVaLsG------------F~gp-------- 121 (192)
++.+ ++++..|..| ....+.|++.|.+|||+++|||||+| +.|+
T Consensus 547 a~~~~td~~~~~~l~p~adgfRn~~~~~~~~~~~~~l~d~a~~lglt~~EmvaL~Gg~r~lG~~~~~s~~G~~T~~p~~f 626 (716)
T TIGR00198 547 ATQAMTDAESFTPLEPIADGFRNYLKRDYAVTPEELLLDKAQLLTLTAPEMTVLIGGMRVLGANHGGSKHGVFTDRVGVL 626 (716)
T ss_pred cccCCCCccccccCCCCCcccchhccccccCCHHHHHHHHHHhCCCChHHHHheecchhhccccCCCCCCCCCcCCCCcc
Confidence 9865 4555443211 23345689999999999999999999 0010
Q ss_pred -----------------------------------C--CchhhHhhccCCCcHHHHHHHhhccCccchhhhHHHHHHHHH
Q 029503 122 -----------------------------------D--QAATEALLATDKDVSPWVQKYQRSRETVSQTDYEVDLITTFT 164 (192)
Q Consensus 122 -----------------------------------~--~l~sD~~L~~d~~t~~~v~~ya~~~~~~~~~~f~~~Fa~Am~ 164 (192)
. .+++|.+|.+|++++++|+.||+|+.. ..|++||++||.
T Consensus 627 ~NdfF~~LLd~~~~w~~~~~~~~~~~~~dr~tg~~~~~~t~~Dl~~~sd~~lra~aE~YA~dd~~---~~F~~DF~~Aw~ 703 (716)
T TIGR00198 627 SNDFFVNLLDMAYEWRAADNNRYLFEGGDRQTGEVKWTATRVDLVFGSNSILRAVAEVYAQDDAR---EKFVKDFVAAWT 703 (716)
T ss_pred ccHHHHHHhcCCceeeecCCCCceeeeecCCCCceeeccChhheeeccCHHHHHHHHHHhccccc---chHHHHHHHHHH
Confidence 1 237899999999999999999999821 349999999999
Q ss_pred HHHcCCC
Q 029503 165 KLSSLGQ 171 (192)
Q Consensus 165 KL~~lg~ 171 (192)
||+++|-
T Consensus 704 Klm~ldr 710 (716)
T TIGR00198 704 KVMNLDR 710 (716)
T ss_pred HHHhCCC
Confidence 9999973
No 15
>PRK15061 catalase/hydroperoxidase HPI(I); Provisional
Probab=99.87 E-value=4.8e-22 Score=190.83 Aligned_cols=137 Identities=22% Similarity=0.381 Sum_probs=109.5
Q ss_pred ChHHHHHHHHHhhcC-CCCCccHHHHHHHhHHHHHHHhhHHHHHHHh---CC--CcccccceecccCCCCCccccccccC
Q 029503 1 MNLLEEAKKDIDSYS-KGGPISFADLIQYAAQSAVKTTFLASAIRKC---GG--NEEKGRLLYTAYGSNGQWGLFEKQFG 74 (192)
Q Consensus 1 l~~id~iK~~~e~~c-~~~~VS~ADlialAa~~Av~~~f~~~~i~~~---GG--p~i~~~~~~~~~g~~~~~~~~~v~~G 74 (192)
+++|++||++++..- ....||+||||+||+.+|| |.+ || |. +|+..|
T Consensus 503 l~~LE~Ik~~f~~~~~~~~~vS~ADLivLaG~vAI---------E~aa~~aG~~~~------------------VPf~pG 555 (726)
T PRK15061 503 LAVLEGIQAEFNAAQSGGKKVSLADLIVLGGNAAV---------EQAAKAAGHDVT------------------VPFTPG 555 (726)
T ss_pred HHHHHHHHHHHhhccCCCCceeHHHHHHHHHHHHH---------HHHHHhCCCCcc------------------cCcCCC
Confidence 468999999996542 2357999999999999999 555 68 65 589999
Q ss_pred CCCCCCC--CCCC---CCCCCcC------------cCHHHHHHHHHHCCCCcccceeeec------------CCCC----
Q 029503 75 RTDAQEP--DPEG---RVPQWEK------------ATVQEMKDKFSAIGLGPRQLAVMSA------------FLGP---- 121 (192)
Q Consensus 75 R~Da~~~--~~~g---~lP~~~~------------~s~~~l~~~F~~~Gl~~~elVaLsG------------F~gp---- 121 (192)
|.|++.+ ++++ ++|. .+ ...+.|++.|++|||+++|||||+| +.|+
T Consensus 556 R~Da~~~~td~esf~~l~P~-Adgfrny~~~~~~~~~e~~L~d~a~~lglt~~EmvaL~Gg~r~Lg~~~~~S~~G~~T~~ 634 (726)
T PRK15061 556 RTDATQEQTDVESFAVLEPK-ADGFRNYLKKGYSVSPEELLVDKAQLLTLTAPEMTVLVGGLRVLGANYGGSKHGVFTDR 634 (726)
T ss_pred CCCcccCCCCcccccccCCC-CccccccccccCCCCHHHHHHHHHHhCCCChHHHhheecchhhcccCCCCCCCCCCcCC
Confidence 9999865 3332 4664 21 2337799999999999999999999 0000
Q ss_pred ---------------------------------------C--CchhhHhhccCCCcHHHHHHHhhc--cCccchhhhHHH
Q 029503 122 ---------------------------------------D--QAATEALLATDKDVSPWVQKYQRS--RETVSQTDYEVD 158 (192)
Q Consensus 122 ---------------------------------------~--~l~sD~~L~~d~~t~~~v~~ya~~--~~~~~~~~f~~~ 158 (192)
. .+++|.+|.+|+++|++++.||+| ++ .|++|
T Consensus 635 p~~fsNdfFvnLLdm~~~W~~~~~~~~~ye~~Dr~tg~~~~~~t~~Dlvfgsds~lRa~aEvYA~dd~~~-----kF~~D 709 (726)
T PRK15061 635 PGVLTNDFFVNLLDMGTEWKPTDEDEEVYEGRDRKTGEVKWTATRVDLVFGSNSQLRALAEVYASDDAKE-----KFVRD 709 (726)
T ss_pred CCccccHHHHHHhcCCceeeecCCCCCceeeccCCCcceeeccChhheecccCHHHHHHHHHHhcccchh-----HHHHH
Confidence 1 257899999999999999999998 54 49999
Q ss_pred HHHHHHHHHcCC
Q 029503 159 LITTFTKLSSLG 170 (192)
Q Consensus 159 Fa~Am~KL~~lg 170 (192)
|++||.||+++|
T Consensus 710 F~~Aw~Kvmeld 721 (726)
T PRK15061 710 FVAAWTKVMNLD 721 (726)
T ss_pred HHHHHHHHHhCC
Confidence 999999999997
No 16
>cd08201 plant_peroxidase_like_1 Uncharacterized family of plant peroxidase-like proteins. This is a subgroup of heme-dependent peroxidases similar to plant peroxidases. Along with animal peroxidases, these enzymes belong to a group of peroxidases containing a heme prosthetic group (ferriprotoporphyrin IX) which catalyzes a multistep oxidative reaction involving hydrogen peroxide as the electron acceptor. The plant peroxidase-like superfamily is found in all three kingdoms of life and carries out a variety of biosynthetic and degradative functions.
Probab=99.80 E-value=5.9e-20 Score=159.81 Aligned_cols=71 Identities=28% Similarity=0.484 Sum_probs=67.4
Q ss_pred CCccHHHHHHHhHHHHHHHhhHHHHHHHhCCCcccccceecccCCCCCccccccccCCCCCCCCCCCCCCCCCcCcCHHH
Q 029503 18 GPISFADLIQYAAQSAVKTTFLASAIRKCGGNEEKGRLLYTAYGSNGQWGLFEKQFGRTDAQEPDPEGRVPQWEKATVQE 97 (192)
Q Consensus 18 ~~VS~ADlialAa~~Av~~~f~~~~i~~~GGp~i~~~~~~~~~g~~~~~~~~~v~~GR~Da~~~~~~g~lP~~~~~s~~~ 97 (192)
.+|||||||+||+++|| +.||||. |+|++||+|++++++++ ||. |+.++++
T Consensus 96 ~~VScADiialAa~~AV---------~~~GGP~------------------i~v~~GR~Da~~s~~~g-lP~-P~~~v~~ 146 (264)
T cd08201 96 PRSSMADLIAMGVVTSV---------ASCGGPV------------------VPFRAGRIDATEAGQAG-VPE-PQTDLGT 146 (264)
T ss_pred CccCHHHHHHHHHHHHH---------HHcCCCe------------------ecccccCCCcccccccc-CCC-CccCHHH
Confidence 47999999999999999 9999998 78999999999998887 999 8999999
Q ss_pred HHHHHHHCCCCcccceeeec
Q 029503 98 MKDKFSAIGLGPRQLAVMSA 117 (192)
Q Consensus 98 l~~~F~~~Gl~~~elVaLsG 117 (192)
|++.|++|||+++|||+|+|
T Consensus 147 l~~~Fa~~Gfs~~DmVaLsg 166 (264)
T cd08201 147 TTESFRRQGFSTSEMIALVA 166 (264)
T ss_pred HHHHHHHcCCChHHHheeec
Confidence 99999999999999999994
No 17
>COG0376 KatG Catalase (peroxidase I) [Inorganic ion transport and metabolism]
Probab=99.76 E-value=1.4e-18 Score=162.23 Aligned_cols=145 Identities=25% Similarity=0.409 Sum_probs=116.6
Q ss_pred hHHHHHHHHHhhcCCCCCccHHHHHHHhHHHHHHHhhHHHHHHHhCCCcccccceecccCC--------CCCcccccccc
Q 029503 2 NLLEEAKKDIDSYSKGGPISFADLIQYAAQSAVKTTFLASAIRKCGGNEEKGRLLYTAYGS--------NGQWGLFEKQF 73 (192)
Q Consensus 2 ~~id~iK~~~e~~c~~~~VS~ADlialAa~~Av~~~f~~~~i~~~GGp~i~~~~~~~~~g~--------~~~~~~~~v~~ 73 (192)
.+|++||++| +..|||||||+|++++|+ +.+|++.+. | +.|+ ...||+-..++
T Consensus 142 RLLWPIKkKY-----G~kiSWaDL~iLaGnvAl---------EsMGfktfG----F-a~GR~D~wepd~dvyWG~e~~wl 202 (730)
T COG0376 142 RLLWPIKKKY-----GRKISWADLIILAGNVAL---------ESMGFKTFG----F-AGGREDVWEPDEDVYWGSEKTWL 202 (730)
T ss_pred HHhhhHhHhh-----cccccHhHhhhhhchhhh---------hhcCCcccc----c-cCCCCcCCCCccccccCcccccc
Confidence 4789999999 789999999999999998 999999852 1 2233 35577666666
Q ss_pred C--CCCCC----CC-----------CCCC--CCCCCcCcCHHHHHHHHHHCCCCcccceeeec----CC-----------
Q 029503 74 G--RTDAQ----EP-----------DPEG--RVPQWEKATVQEMKDKFSAIGLGPRQLAVMSA----FL----------- 119 (192)
Q Consensus 74 G--R~Da~----~~-----------~~~g--~lP~~~~~s~~~l~~~F~~~Gl~~~elVaLsG----F~----------- 119 (192)
+ |..+. .| +|+| ..|+ |..++.++++.|+||+||++|.|||++ |+
T Consensus 203 ~d~Ry~~~~~Le~PlaavqMGLIYVNPEGpng~PD-pl~aA~dIRetFaRMaMNDeETVALiaGGHtfGKtHGag~a~~v 281 (730)
T COG0376 203 GDERYSGDRDLENPLAAVQMGLIYVNPEGPNGNPD-PLAAARDIRETFARMAMNDEETVALIAGGHTFGKTHGAGPASNV 281 (730)
T ss_pred ccccccccccccCchhhheeeeEEeCCCCCCCCCC-hhhhHHHHHHHHHHhcCCcHhhhhhhhcccccccccCCCchhhc
Confidence 5 21111 11 4565 3899 889999999999999999999999986 21
Q ss_pred --------------------------------------------------------------------------------
Q 029503 120 -------------------------------------------------------------------------------- 119 (192)
Q Consensus 120 -------------------------------------------------------------------------------- 119 (192)
T Consensus 282 g~ePe~a~ie~qGlGW~~~~g~G~G~dtitsGlE~~Wt~tPT~w~n~ff~~Lf~yEWeltksPAGa~Qw~~k~~~~~~~p 361 (730)
T COG0376 282 GPEPEAAPIEQQGLGWANTYGSGKGPDTITSGLEGAWTTTPTQWSNEFFENLFNYEWELTKSPAGAWQWDAKSAAAETIP 361 (730)
T ss_pred CCCccccchhhhccccccccCCCcCcccccccccccCCCCcchhhhHHHHHHhccceeeecCCCccccccccCccccCCC
Confidence
Q ss_pred ---------CCCCchhhHhhccCCCcHHHHHHHhhccCccchhhhHHHHHHHHHHHHcCCC
Q 029503 120 ---------GPDQAATEALLATDKDVSPWVQKYQRSRETVSQTDYEVDLITTFTKLSSLGQ 171 (192)
Q Consensus 120 ---------gp~~l~sD~~L~~d~~t~~~v~~ya~~~~~~~~~~f~~~Fa~Am~KL~~lg~ 171 (192)
.|.||.+|.+|..||+++.+.++|..|++. |.+.|++||.||...+.
T Consensus 362 d~~dp~~~~~p~MlttDlaLr~DP~Y~kIs~rf~e~pd~-----F~~~FArAWfKLtHRDM 417 (730)
T COG0376 362 DAHDPSKKHGPMMLTTDLALRFDPEYEKISRRFLEDPDE-----FADAFARAWFKLTHRDM 417 (730)
T ss_pred CCCCcccccCceeeccchhhhcChHHHHHHHHHHhCHHH-----HHHHHHHHHHHHhhccC
Confidence 014899999999999999999999999964 99999999999998754
No 18
>COG0376 KatG Catalase (peroxidase I) [Inorganic ion transport and metabolism]
Probab=99.24 E-value=1.1e-11 Score=116.46 Aligned_cols=140 Identities=22% Similarity=0.385 Sum_probs=103.8
Q ss_pred ChHHHHHHHHHhhcCCCCCccHHHHHHHhHHHHHHHhhHHHHHHHhCCCcccccceecccCCCCCccccccccCCCCCCC
Q 029503 1 MNLLEEAKKDIDSYSKGGPISFADLIQYAAQSAVKTTFLASAIRKCGGNEEKGRLLYTAYGSNGQWGLFEKQFGRTDAQE 80 (192)
Q Consensus 1 l~~id~iK~~~e~~c~~~~VS~ADlialAa~~Av~~~f~~~~i~~~GGp~i~~~~~~~~~g~~~~~~~~~v~~GR~Da~~ 80 (192)
|.+++.|.+.+ ...||.||||+|++..+|+.| .+.+|-.|. .|+..||.|++.
T Consensus 513 l~~le~iq~~f-----nkkvSlADlIVL~G~a~ie~A------Ak~aG~~v~----------------VPF~pGR~DA~q 565 (730)
T COG0376 513 LAVLEKIQKEF-----NKKVSLADLIVLGGNAAVEKA------AKAAGFSVT----------------VPFAPGRTDASQ 565 (730)
T ss_pred HHHHHHHHHHh-----cCccchhHheeecchHHHHHH------HHhcCceee----------------eccCCCCcccch
Confidence 45788888888 356999999999999999653 455666654 678899999975
Q ss_pred C--CCCC---CCC-----------CCcCcCHHHHHHHHHHCCCCcccceeeec----------------CC---------
Q 029503 81 P--DPEG---RVP-----------QWEKATVQEMKDKFSAIGLGPRQLAVMSA----------------FL--------- 119 (192)
Q Consensus 81 ~--~~~g---~lP-----------~~~~~s~~~l~~~F~~~Gl~~~elVaLsG----------------F~--------- 119 (192)
. +.+. .-| .....+-+-|+++-+.++|+..||++|+| |.
T Consensus 566 eqtDv~sf~~LeP~aDGfRNy~~~~~~~~pe~~LvDkAqlL~LtapemtVLiGGlRvLg~n~g~s~~GVfT~~pg~Ltnd 645 (730)
T COG0376 566 EQTDVESFAVLEPIADGFRNYVKKDYVLTPEELLVDKAQLLTLTAPEMTVLIGGLRVLGANYGGSKHGVFTDRPGVLTND 645 (730)
T ss_pred hhcchhhhhcccccchhhhhhccCCCcCCHHHHHHHHHHHhccCCccceEEEcceEeeccCCCCCccceeccCcccccch
Confidence 4 2111 011 11222234589999999999999999998 10
Q ss_pred -----------------------CC---------CCchhhHhhccCCCcHHHHHHHhhccCccchhhhHHHHHHHHHHHH
Q 029503 120 -----------------------GP---------DQAATEALLATDKDVSPWVQKYQRSRETVSQTDYEVDLITTFTKLS 167 (192)
Q Consensus 120 -----------------------gp---------~~l~sD~~L~~d~~t~~~v~~ya~~~~~~~~~~f~~~Fa~Am~KL~ 167 (192)
+. .....|..+-+++..|.+.+.|+.+.. +..|.+||++||.|.+
T Consensus 646 FFvnLlDM~~~W~~~~~~~~~feg~DrktG~~kwt~trvDLvfGsns~LRA~aEVYa~dda---~ekFv~DFvaaw~kVM 722 (730)
T COG0376 646 FFVNLLDMGTEWKPTDDARGLFEGRDRKTGEVKWTATRVDLVFGSNSELRALAEVYASDDA---KEKFVKDFVAAWTKVM 722 (730)
T ss_pred hhhhhhhccceeeeccccccceeccccccCceEeeeeEEeEEecCcHHHHHHHHHHhccch---HHHHHHHHHHHHHHHh
Confidence 00 123567777788899999999999874 4789999999999999
Q ss_pred cCC
Q 029503 168 SLG 170 (192)
Q Consensus 168 ~lg 170 (192)
|+.
T Consensus 723 n~D 725 (730)
T COG0376 723 NLD 725 (730)
T ss_pred ccc
Confidence 974
No 19
>PF11895 DUF3415: Domain of unknown function (DUF3415); InterPro: IPR024589 Peroxidases are haem-containing enzymes that use hydrogen peroxide as the electron acceptor to catalyse a number of oxidative reactions. Peroxidases are found in bacteria, fungi, plants and animals. Fungal ligninases are extracellular haem enzymes involved in the degradation of lignin. They include lignin peroxidases (LiPs), manganese-dependent peroxidases (MnPs) and versatile peroxidases, which combine the substrate-specificity characteristics of the other two []. In MnP, Mn2+ serves as the reducing substrate []. It is commonly thought that the plant polymer lignin is the second most abundant organic compound on Earth, exceeded only by cellulose. Higher plants synthesise vast quantities of insoluble macromolecules, including lignins. Lignin is an amorphous three-dimensional aromatic biopolymer composed of oxyphenylpropane units. Biodegradation of lignins is slow - it is probable that their decomposition is the rate-limiting step in the biospheric carbon-oxygen cycle, which is mediated almost entirely by the catabolic activities of microorganisms. The white-rot fungi are able extensively to decompose all the important structural components of wood, including both cellulose and lignin. Under the proper environmental conditions, white-rot fungi completely degrade all structural components of lignin, with ultimate formation of CO2 and H2O. The first step in lignin degradation is depolymerisation, catalysed by the LiPs (ligninases). LiPs are secreted, along with hydrogen peroxide (H2O2), by white-rot fungi under conditions of nutrient limitation. The enzymes are not only important in lignin biodegradation, but are also potentially valuable in chemical waste disposal because of their ability to degrade environmental pollutants []. To date, 3D structures have been determined for LiP [] and MnP [] from Phanerochaete chrysosporium (White-rot fungus), and for the fungal peroxidase from Arthromyces ramosus []. All these proteins share the same architecture and consist of 2 all-alpha domains, between which is embedded the haem group. The helical topography of LiPs is nearly identical to that of yeast cytochrome c peroxidase (CCP) [], despite the former having 4 disulphide bonds, which are absent in CCP (MnP has an additional disulphide bond at the C terminus). This uncharacterised C-terminal domain is found in fungal ligninases. It is about 80 amino acids in length and associated with Pfam:PF00141.; PDB: 1B85_B 1B82_A 1B80_A 1YYG_A 1YZP_A 1MNP_A 1MN1_A 1YZR_A 1MN2_A 3M8M_A ....
Probab=70.19 E-value=3.1 Score=30.63 Aligned_cols=20 Identities=20% Similarity=0.368 Sum_probs=16.5
Q ss_pred hHHHHHHHHHHHHcCCCCCC
Q 029503 155 YEVDLITTFTKLSSLGQQIN 174 (192)
Q Consensus 155 f~~~Fa~Am~KL~~lg~~~~ 174 (192)
....|..||.||+.+|+..+
T Consensus 3 m~~~F~~am~KlavLG~d~~ 22 (80)
T PF11895_consen 3 MQSAFKAAMAKLAVLGHDRS 22 (80)
T ss_dssp HHHHHHHHHHHHCTTTS-GG
T ss_pred HHHHHHHHHHHHHHhcCChh
Confidence 57889999999999998543
No 20
>PRK12787 fliX flagellar assembly regulator FliX; Reviewed
Probab=40.67 E-value=35 Score=27.56 Aligned_cols=30 Identities=20% Similarity=0.314 Sum_probs=26.4
Q ss_pred ChHHHHHHHHHhhcCCCCCccHHHHHHHhHHHHH
Q 029503 1 MNLLEEAKKDIDSYSKGGPISFADLIQYAAQSAV 34 (192)
Q Consensus 1 l~~id~iK~~~e~~c~~~~VS~ADlialAa~~Av 34 (192)
||.||.+|-.+ -.+.||-+|++.|+....-
T Consensus 78 LD~Ld~Lk~aL----L~G~~~~~~L~~L~~~~~e 107 (138)
T PRK12787 78 LDVLDELKIGL----LSGTLDAATLARLRRAVRE 107 (138)
T ss_pred HHHHHHHHHHH----HcCCCCHHHHHHHHHHHHH
Confidence 68999999998 4689999999999998874
No 21
>PF10768 FliX: Class II flagellar assembly regulator; InterPro: IPR019704 The FliX protein is possibly a transient component of the flagellum that is required for the assembly process. FliX may contribute to the targeting or assembly of the P- and L-ring protein monomers at the cell pole. The family carries a potential N-terminal signal sequence and at least one transmembrane domain indicating that it might function either in or in association with the cell membrane [].
Probab=29.67 E-value=79 Score=25.50 Aligned_cols=30 Identities=23% Similarity=0.349 Sum_probs=26.4
Q ss_pred ChHHHHHHHHHhhcCCCCCccHHHHHHHhHHHHH
Q 029503 1 MNLLEEAKKDIDSYSKGGPISFADLIQYAAQSAV 34 (192)
Q Consensus 1 l~~id~iK~~~e~~c~~~~VS~ADlialAa~~Av 34 (192)
||.||.+|..+ -.+.|+-+++..|+...+-
T Consensus 80 LD~Ld~Lk~~L----L~G~v~~~~L~~L~~~~~~ 109 (139)
T PF10768_consen 80 LDVLDELKIGL----LSGTVPRGDLERLARAVRE 109 (139)
T ss_pred HHHHHHHHHHH----HcCCCCHHHHHHHHHHHHH
Confidence 68899999998 3689999999999999875
No 22
>PF09533 DUF2380: Predicted lipoprotein of unknown function (DUF2380); InterPro: IPR011755 This family consists of at least 9 paralogs in Myxococcus xanthus, a member of the Deltaproteobacteria. One appears truncated toward the N terminus; the others are predicted lipoproteins. The function is unknown.
Probab=29.50 E-value=1.7e+02 Score=24.81 Aligned_cols=23 Identities=13% Similarity=0.283 Sum_probs=20.5
Q ss_pred HHHHHHHHHHCCCCcccceeeec
Q 029503 95 VQEMKDKFSAIGLGPRQLAVMSA 117 (192)
Q Consensus 95 ~~~l~~~F~~~Gl~~~elVaLsG 117 (192)
.++|..+|+++|++..|-+.++.
T Consensus 107 a~~la~wF~~~Gi~IHd~ti~Ip 129 (188)
T PF09533_consen 107 AEELAEWFERRGIDIHDYTIPIP 129 (188)
T ss_pred cHHHHHHHHHcCCChhheeEecC
Confidence 46899999999999999988776
No 23
>COG4950 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=28.91 E-value=80 Score=26.83 Aligned_cols=26 Identities=19% Similarity=0.386 Sum_probs=22.1
Q ss_pred CcCHHHHHHHHHHCCCCcccceeeec
Q 029503 92 KATVQEMKDKFSAIGLGPRQLAVMSA 117 (192)
Q Consensus 92 ~~s~~~l~~~F~~~Gl~~~elVaLsG 117 (192)
...-.+.+......||+.+|+|.|++
T Consensus 133 ~~~~r~~l~~L~~vGLta~DiVtLsq 158 (193)
T COG4950 133 SDIDREALERLYDVGLTARDIVTLSQ 158 (193)
T ss_pred ccCCHHHHHHHhhcCCCccchhhHHH
Confidence 34447788999999999999999988
No 24
>PF00043 GST_C: Glutathione S-transferase, C-terminal domain; InterPro: IPR004046 In eukaryotes, glutathione S-transferases (GSTs) participate in the detoxification of reactive electrophillic compounds by catalysing their conjugation to glutathione. The GST domain is also found in S-crystallins from squid, and proteins with no known GST activity, such as eukaryotic elongation factors 1-gamma and the HSP26 family of stress-related proteins, which include auxin-regulated proteins in plants and stringent starvation proteins in Escherichia coli. The major lens polypeptide of cephalopods is also a GST [, , , ]. Bacterial GSTs of known function often have a specific, growth-supporting role in biodegradative metabolism: epoxide ring opening and tetrachlorohydroquinone reductive dehalogenation are two examples of the reactions catalysed by these bacterial GSTs. Some regulatory proteins, like the stringent starvation proteins, also belong to the GST family [, ]. GST seems to be absent from Archaea in which gamma-glutamylcysteine substitute to glutathione as major thiol. Glutathione S-transferases form homodimers, but in eukaryotes can also form heterodimers of the A1 and A2 or YC1 and YC2 subunits. The homodimeric enzymes display a conserved structural fold. Each monomer is composed of a distinct N-terminal sub-domain, which adopts the thioredoxin fold, and a C-terminal all-helical sub-domain. This entry is the C-terminal domain.; PDB: 3UAP_A 3UAR_A 3QAV_A 3QAW_A 1Y6E_A 1U88_B 4AI6_B 1UA5_A 4AKH_A 3QMZ_S ....
Probab=28.84 E-value=39 Score=23.26 Aligned_cols=18 Identities=17% Similarity=0.385 Sum_probs=13.5
Q ss_pred CCCccHHHHHHHhHHHHH
Q 029503 17 GGPISFADLIQYAAQSAV 34 (192)
Q Consensus 17 ~~~VS~ADlialAa~~Av 34 (192)
+..+|+|||..+..-.-+
T Consensus 52 G~~~t~ADi~~~~~~~~~ 69 (95)
T PF00043_consen 52 GDKLTIADIALFPMLDWL 69 (95)
T ss_dssp BSS-CHHHHHHHHHHHHH
T ss_pred ccCCchhHHHHHHHHHHH
Confidence 678999999888776654
No 25
>PF11020 DUF2610: Domain of unknown function (DUF2610); InterPro: IPR021277 This family is conserved in Proteobacteria. One member is annotated as being elongation factor P but this could not be confirmed.
Probab=24.77 E-value=1e+02 Score=22.78 Aligned_cols=30 Identities=23% Similarity=0.287 Sum_probs=20.1
Q ss_pred HHHHHHHHHhhcCCCCCccHHHHHHHhHHHH
Q 029503 3 LLEEAKKDIDSYSKGGPISFADLIQYAAQSA 33 (192)
Q Consensus 3 ~id~iK~~~e~~c~~~~VS~ADlialAa~~A 33 (192)
+.|.+.+-++-.- .+.||.+||+++|=..|
T Consensus 50 V~~sl~kL~~La~-~N~v~feeLc~YAL~~a 79 (82)
T PF11020_consen 50 VMDSLSKLYKLAK-ENNVSFEELCVYALGVA 79 (82)
T ss_pred HHHHHHHHHHHHH-HcCCCHHHHHHHHHHHh
Confidence 3444444444343 57899999999987665
No 26
>PF06940 DUF1287: Domain of unknown function (DUF1287); InterPro: IPR009706 This family consists of several hypothetical bacterial proteins of around 200 residues in length. The function of this family is unknown.
Probab=22.06 E-value=86 Score=26.05 Aligned_cols=33 Identities=18% Similarity=0.303 Sum_probs=26.8
Q ss_pred CCCCCCCCCcCcCHHHHHHHHHHCCCCccccee
Q 029503 82 DPEGRVPQWEKATVQEMKDKFSAIGLGPRQLAV 114 (192)
Q Consensus 82 ~~~g~lP~~~~~s~~~l~~~F~~~Gl~~~elVa 114 (192)
=|.|.+|....-..+-++..|+..|++.+++|-
T Consensus 24 YP~GDvp~~~GVCTDVViRA~R~~g~DLq~lVh 56 (164)
T PF06940_consen 24 YPNGDVPDNTGVCTDVVIRAYRDAGYDLQKLVH 56 (164)
T ss_pred CCCCCCCCCCCccHHHHHHHHHHcCCCHHHHHH
Confidence 467888885556667799999999999998875
No 27
>PF12637 TSCPD: TSCPD domain; InterPro: IPR024434 The domain is found in isolation in many proteins where it has a conserved C-terminal motif TSCPD, after which the domain is named. Most copies of the domain possess 4 conserved cysteines that may be part of an Iron-sulphur cluster. This domain is found at the C terminus of some ribonucleoside-diphosphate reductase enzymes.
Probab=20.94 E-value=1.3e+02 Score=22.13 Aligned_cols=27 Identities=22% Similarity=0.117 Sum_probs=17.2
Q ss_pred HHHHHHHHhhc-CCCCCc-------cHHHHHHHhH
Q 029503 4 LEEAKKDIDSY-SKGGPI-------SFADLIQYAA 30 (192)
Q Consensus 4 id~iK~~~e~~-c~~~~V-------S~ADlialAa 30 (192)
+++|-++++.. |++..- ||+|.|+-+=
T Consensus 57 ~~~ii~~L~gi~~~~~~~~~~~~~~S~~D~Ia~~L 91 (95)
T PF12637_consen 57 PEEIIDQLRGIRCGPSGTVGGSRVTSCPDAIAKAL 91 (95)
T ss_pred HHHHHHHhcCCCCCCCCccCCCccCcHHHHHHHHH
Confidence 34555666555 544455 9999998653
Done!