BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 029504
(192 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1NNL|A Chain A, Crystal Structure Of Human Phosphoserine Phosphatase
pdb|1NNL|B Chain B, Crystal Structure Of Human Phosphoserine Phosphatase
Length = 225
Score = 135 bits (341), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 65/147 (44%), Positives = 94/147 (63%)
Query: 41 GLTEFIFVFFARAMGGSVPFEEALAARLSLFKPSLSQVQDFLEKRPPRLSPGIDEXXXXX 100
G+ + + RAMGG+VPF+ AL RL+L +PS QVQ + ++PP L+PGI E
Sbjct: 39 GVEDAVSEMTRRAMGGAVPFKAALTERLALIQPSREQVQRLIAEQPPHLTPGIRELVSRL 98
Query: 101 XXXXXXXYLISGGFRHMINPIASVLGIPPENIFANQLLFKSSGEFLGFDANEPTSRSGGK 160
+LISGGFR ++ +AS L IP N+FAN+L F +GE+ GFD +PT+ SGGK
Sbjct: 99 QERNVQVFLISGGFRSIVEHVASKLNIPATNVFANRLKFYFNGEYAGFDETQPTAESGGK 158
Query: 161 AAAVQQIRKAHAYKVLAMIGDGATDLE 187
++ +++ +K + MIGDGATD+E
Sbjct: 159 GKVIKLLKEKFHFKKIIMIGDGATDME 185
>pdb|1L8L|A Chain A, Molecular Basis For The Local Confomational Rearrangement
Of Human Phosphoserine Phosphatase
pdb|1L8L|B Chain B, Molecular Basis For The Local Confomational Rearrangement
Of Human Phosphoserine Phosphatase
pdb|1L8O|A Chain A, Molecular Basis For The Local Conformational Rearrangement
Of Human Phosphoserine Phosphatase
pdb|1L8O|B Chain B, Molecular Basis For The Local Conformational Rearrangement
Of Human Phosphoserine Phosphatase
Length = 225
Score = 135 bits (340), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 65/147 (44%), Positives = 94/147 (63%)
Query: 41 GLTEFIFVFFARAMGGSVPFEEALAARLSLFKPSLSQVQDFLEKRPPRLSPGIDEXXXXX 100
G+ + + RAMGG+VPF+ AL RL+L +PS QVQ + ++PP L+PGI E
Sbjct: 39 GVEDAVSEMTRRAMGGAVPFKAALTERLALIQPSREQVQRLIAEQPPHLTPGIRELVSRL 98
Query: 101 XXXXXXXYLISGGFRHMINPIASVLGIPPENIFANQLLFKSSGEFLGFDANEPTSRSGGK 160
+LISGGFR ++ +AS L IP N+FAN+L F +GE+ GFD +PT+ SGGK
Sbjct: 99 QERNVQVFLISGGFRSIVEHVASKLNIPATNVFANRLKFYFNGEYAGFDETQPTAESGGK 158
Query: 161 AAAVQQIRKAHAYKVLAMIGDGATDLE 187
++ +++ +K + MIGDGATD+E
Sbjct: 159 GKVIKFLKEKFHFKKIIMIGDGATDME 185
>pdb|3KD3|A Chain A, Crystal Structure Of A Phosphoserine Phosphohydrolase-Like
Protein From Francisella Tularensis Subsp. Tularensis
Schu S4
pdb|3KD3|B Chain B, Crystal Structure Of A Phosphoserine Phosphohydrolase-Like
Protein From Francisella Tularensis Subsp. Tularensis
Schu S4
Length = 219
Score = 64.3 bits (155), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 42/134 (31%), Positives = 65/134 (48%), Gaps = 4/134 (2%)
Query: 56 GSVPFEEALAARLSLFKPSLSQVQDFLEKRPPRL-SPGIDEXXXXXXXXXXXXYLISGGF 114
G + F ++L RL++ P+ +++F K P L + GI E ++ SGG
Sbjct: 49 GDISFRDSLQKRLAIASPTKQSIKEFSNKYCPNLLTDGIKELVQDLKNKGFEIWIFSGGL 108
Query: 115 RHMINPIASVLGIPPENIFANQLLFKSSGEFLGFDANEPTSRSGGKAAAVQQIRKAHAYK 174
I P A L IP ENIFA + ++ S G F D + S K +A + + +
Sbjct: 109 SESIQPFADYLNIPRENIFAVETIWNSDGSFKELDNSNGACDS--KLSAFDKAKGLIDGE 166
Query: 175 VLAMIGDGATDLEV 188
V+A IGDG TD ++
Sbjct: 167 VIA-IGDGYTDYQL 179
>pdb|1F5S|A Chain A, Crystal Structure Of Phosphoserine Phosphatase From
Methanococcus Jannaschii
pdb|1F5S|B Chain B, Crystal Structure Of Phosphoserine Phosphatase From
Methanococcus Jannaschii
Length = 211
Score = 49.7 bits (117), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 40/149 (26%), Positives = 69/149 (46%), Gaps = 9/149 (6%)
Query: 41 GLTEFIFVFFARAMGGSVPFEEALAARLSLFKP-SLSQVQDFLEKRPPRLSPGIDEXXXX 99
G+ E + AM G + FE++L R+SL K + +V+ +++ P + G +E
Sbjct: 30 GVEEEVKKITKEAMEGKLNFEQSLRKRVSLLKDLPIEKVEKAIKRITP--TEGAEETIKE 87
Query: 100 XXXXXXXXYLISGGFRHMINPIASVLGIPPENIFANQLLFKSSGEFLGFDANEPTSRSGG 159
++SGGF +N I LG+ + FAN+L+ K G+ G D +
Sbjct: 88 LKNRGYVVAVVSGGFDIAVNKIKEKLGL--DYAFANRLIVK-DGKLTG-DVEGEVLKENA 143
Query: 160 KAAAVQQIRKAHAYKV--LAMIGDGATDL 186
K +++I K + +GDGA D+
Sbjct: 144 KGEILEKIAKIEGINLEDTVAVGDGANDI 172
>pdb|1J97|A Chain A, Phospho-Aspartyl Intermediate Analogue Of Phosphoserine
Phosphatase
pdb|1J97|B Chain B, Phospho-Aspartyl Intermediate Analogue Of Phosphoserine
Phosphatase
Length = 211
Score = 49.7 bits (117), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 40/149 (26%), Positives = 69/149 (46%), Gaps = 9/149 (6%)
Query: 41 GLTEFIFVFFARAMGGSVPFEEALAARLSLFKP-SLSQVQDFLEKRPPRLSPGIDEXXXX 99
G+ E + AM G + FE++L R+SL K + +V+ +++ P + G +E
Sbjct: 30 GVEEEVKKITKEAMEGKLNFEQSLRKRVSLLKDLPIEKVEKAIKRITP--TEGAEETIKE 87
Query: 100 XXXXXXXXYLISGGFRHMINPIASVLGIPPENIFANQLLFKSSGEFLGFDANEPTSRSGG 159
++SGGF +N I LG+ + FAN+L+ K G+ G D +
Sbjct: 88 LKNRGYVVAVVSGGFDIAVNKIKEKLGL--DYAFANRLIVK-DGKLTG-DVEGEVLKENA 143
Query: 160 KAAAVQQIRKAHAYKV--LAMIGDGATDL 186
K +++I K + +GDGA D+
Sbjct: 144 KGEILEKIAKIEGINLEDTVAVGDGANDI 172
>pdb|1L7O|A Chain A, Crystal Structure Of Phosphoserine Phosphatase In Apo Form
pdb|1L7O|B Chain B, Crystal Structure Of Phosphoserine Phosphatase In Apo Form
pdb|1L7P|A Chain A, Substrate Bound Phosphoserine Phosphatase Complex
Structure
pdb|1L7P|B Chain B, Substrate Bound Phosphoserine Phosphatase Complex
Structure
Length = 211
Score = 47.0 bits (110), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 39/149 (26%), Positives = 68/149 (45%), Gaps = 9/149 (6%)
Query: 41 GLTEFIFVFFARAMGGSVPFEEALAARLSLFKP-SLSQVQDFLEKRPPRLSPGIDEXXXX 99
G+ E + A G + FE++L R+SL K + +V+ +++ P + G +E
Sbjct: 30 GVEEEVKKITKEAXEGKLNFEQSLRKRVSLLKDLPIEKVEKAIKRITP--TEGAEETIKE 87
Query: 100 XXXXXXXXYLISGGFRHMINPIASVLGIPPENIFANQLLFKSSGEFLGFDANEPTSRSGG 159
++SGGF +N I LG+ + FAN+L+ K G+ G D +
Sbjct: 88 LKNRGYVVAVVSGGFDIAVNKIKEKLGL--DYAFANRLIVK-DGKLTG-DVEGEVLKENA 143
Query: 160 KAAAVQQIRKAHAYKV--LAMIGDGATDL 186
K +++I K + +GDGA D+
Sbjct: 144 KGEILEKIAKIEGINLEDTVAVGDGANDI 172
>pdb|1L7M|A Chain A, High Resolution Liganded Structure Of Phosphoserine
Phosphatase (Pi Complex)
pdb|1L7M|B Chain B, High Resolution Liganded Structure Of Phosphoserine
Phosphatase (Pi Complex)
pdb|1L7N|A Chain A, Transition State Analogue Of Phosphoserine Phosphatase
(Aluminum Fluoride Complex)
pdb|1L7N|B Chain B, Transition State Analogue Of Phosphoserine Phosphatase
(Aluminum Fluoride Complex)
Length = 211
Score = 46.6 bits (109), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 39/149 (26%), Positives = 68/149 (45%), Gaps = 9/149 (6%)
Query: 41 GLTEFIFVFFARAMGGSVPFEEALAARLSLFKP-SLSQVQDFLEKRPPRLSPGIDEXXXX 99
G+ E + A G + FE++L R+SL K + +V+ +++ P + G +E
Sbjct: 30 GVEEEVKKITKEAXEGKLNFEQSLRKRVSLLKDLPIEKVEKAIKRITP--TEGAEETIKE 87
Query: 100 XXXXXXXXYLISGGFRHMINPIASVLGIPPENIFANQLLFKSSGEFLGFDANEPTSRSGG 159
++SGGF +N I LG+ + FAN+L+ K G+ G D +
Sbjct: 88 LKNRGYVVAVVSGGFDIAVNKIKEKLGL--DYAFANRLIVK-DGKLTG-DVEGEVLKENA 143
Query: 160 KAAAVQQIRKAHAYKV--LAMIGDGATDL 186
K +++I K + +GDGA D+
Sbjct: 144 KGEILEKIAKIEGINLEDTVAVGDGANDI 172
>pdb|3P96|A Chain A, Crystal Structure Of Phosphoserine Phosphatase Serb From
Mycobacterium Avium, Native Form
Length = 415
Score = 32.7 bits (73), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 36/140 (25%), Positives = 60/140 (42%), Gaps = 13/140 (9%)
Query: 53 AMGGSVPFEEALAARLSLFKPSLSQVQDFLEKRPPRLSPGIDEXXXXXXXXXXXXYLISG 112
AM G + F ++L R++ + V D + + L PG ++SG
Sbjct: 222 AMRGELDFAQSLQQRVATLAGLPATVIDEVAGQL-ELMPGARTTLRTLRRLGYACGVVSG 280
Query: 113 GFRHMINPIASVLGIPPENIFANQLLFKS---SGEFLGFDANEPTSRSGGKAAAVQQI-- 167
GFR +I P+A L + + + AN+L +G +G P GKA A+++
Sbjct: 281 GFRRIIEPLAEELML--DYVAANELEIVDGTLTGRVVG-----PIIDRAGKATALREFAQ 333
Query: 168 RKAHAYKVLAMIGDGATDLE 187
R +GDGA D++
Sbjct: 334 RAGVPMAQTVAVGDGANDID 353
>pdb|3MX3|A Chain A, Crystal Structure Of A Susd Homolog (Bf0972) From
Bacteroides Fragilis Nctc 9343 At 2.00 A Resolution
pdb|3MX3|B Chain B, Crystal Structure Of A Susd Homolog (Bf0972) From
Bacteroides Fragilis Nctc 9343 At 2.00 A Resolution
Length = 490
Score = 31.2 bits (69), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 23/44 (52%), Gaps = 3/44 (6%)
Query: 40 DGLTEFIF---VFFARAMGGSVPFEEALAARLSLFKPSLSQVQD 80
DGL FI +F+ G +P+EEAL L L +P + ++
Sbjct: 96 DGLAHFIKAYKIFYXSXEXGDLPYEEALQGELGLVRPKYNTQKE 139
>pdb|3N28|A Chain A, Crystal Structure Of Probable Phosphoserine Phosphatase
From Vibrio Cholerae, Unliganded Form
Length = 335
Score = 30.8 bits (68), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 39/152 (25%), Positives = 61/152 (40%), Gaps = 11/152 (7%)
Query: 39 LDGLTEFIFVFFARAMGGSVPFEEALAARLSLFKPSLSQVQDFLEKRPPRLSPGIDEXXX 98
L G+ E + RAM G + FE++L R+S K + Q+ + + P L P + E
Sbjct: 130 LAGVGEEVAEVTERAMQGELDFEQSLRLRVSKLKDAPEQILSQVRETLP-LMPELPELVA 188
Query: 99 XXXXXXXXXYLISGGFRHMINPIASVLGIPPENIFANQLLFKSSGEFLGFDANEPTSRSG 158
+ SGGF + + + L + + + L SG+ G E S
Sbjct: 189 TLHAFGWKVAIASGGFTYFSDYLKEQLSL---DYAQSNTLEIVSGKLTGQVLGEVVS--- 242
Query: 159 GKAAAVQQIRKAHAYKV----LAMIGDGATDL 186
+ A + A Y V +GDGA DL
Sbjct: 243 AQTKADILLTLAQQYDVEIHNTVAVGDGANDL 274
>pdb|1U5I|A Chain A, Crystal Structure Analysis Of Rat M-Calpain Mutant Lys10
Thr
Length = 700
Score = 26.9 bits (58), Expect = 6.2, Method: Composition-based stats.
Identities = 20/62 (32%), Positives = 28/62 (45%), Gaps = 6/62 (9%)
Query: 128 PPENIFANQLLFKSSGEFLGFDANEPTSRSGGKAAAVQQIRKAHAYKVLAMIGDGATDLE 187
PP N+F G LG + TS + +A Q++ K HAY V GA ++E
Sbjct: 220 PPPNLFKIIQKALEKGSLLGCSI-DITSAADSEAVTYQKLVKGHAYSV-----TGAEEVE 273
Query: 188 VS 189
S
Sbjct: 274 SS 275
>pdb|3DF0|A Chain A, Calcium-Dependent Complex Between M-Calpain And
Calpastatin
pdb|3BOW|A Chain A, Structure Of M-Calpain In Complex With Calpastatin
Length = 714
Score = 26.9 bits (58), Expect = 6.2, Method: Composition-based stats.
Identities = 20/62 (32%), Positives = 28/62 (45%), Gaps = 6/62 (9%)
Query: 128 PPENIFANQLLFKSSGEFLGFDANEPTSRSGGKAAAVQQIRKAHAYKVLAMIGDGATDLE 187
PP N+F G LG + TS + +A Q++ K HAY V GA ++E
Sbjct: 220 PPPNLFKIIQKALEKGSLLGCSI-DITSAADSEAVTYQKLVKGHAYSV-----TGAEEVE 273
Query: 188 VS 189
S
Sbjct: 274 SS 275
>pdb|1DF0|A Chain A, Crystal Structure Of M-Calpain
Length = 700
Score = 26.9 bits (58), Expect = 6.2, Method: Composition-based stats.
Identities = 20/62 (32%), Positives = 28/62 (45%), Gaps = 6/62 (9%)
Query: 128 PPENIFANQLLFKSSGEFLGFDANEPTSRSGGKAAAVQQIRKAHAYKVLAMIGDGATDLE 187
PP N+F G LG + TS + +A Q++ K HAY V GA ++E
Sbjct: 220 PPPNLFKIIQKALEKGSLLGCSI-DITSAADSEAVTYQKLVKGHAYSV-----TGAEEVE 273
Query: 188 VS 189
S
Sbjct: 274 SS 275
>pdb|1MDW|A Chain A, Crystal Structure Of Calcium-bound Protease Core Of
Calpain Ii Reveals The Basis For Intrinsic Inactivation
pdb|1MDW|B Chain B, Crystal Structure Of Calcium-bound Protease Core Of
Calpain Ii Reveals The Basis For Intrinsic Inactivation
Length = 328
Score = 26.6 bits (57), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 33/79 (41%), Gaps = 8/79 (10%)
Query: 113 GFRHMINPIASV--LGIPPENIFANQLLFKSSGEFLGFDANEPTSRSGGKAAAVQQIRKA 170
GF IA L PP N+F G LG + TS + +A Q++ K
Sbjct: 185 GFEDFTGGIAEWYELRKPPPNLFKIIQKALEKGSLLGCSID-ITSAADSEAVTYQKLVKG 243
Query: 171 HAYKVLAMIGDGATDLEVS 189
HAY V GA ++E S
Sbjct: 244 HAYSVT-----GAEEVESS 257
>pdb|3O82|A Chain A, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
5'-O-[n-(2,3-Dihydroxybenzoyl)sulfamoyl] Adenosine
pdb|3O82|B Chain B, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
5'-O-[n-(2,3-Dihydroxybenzoyl)sulfamoyl] Adenosine
pdb|3O83|A Chain A, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
2-(4-N-Dodecyl-1,2,
3-Triazol-1-Yl)-5'-O-[n-(2-Hydroxybenzoyl)
Sulfamoyl]adenosine
pdb|3O83|B Chain B, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
2-(4-N-Dodecyl-1,2,
3-Triazol-1-Yl)-5'-O-[n-(2-Hydroxybenzoyl)
Sulfamoyl]adenosine
pdb|3O84|A Chain A, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
6-Phenyl-1-(Pyridin-4-Ylmethyl)-1h-Pyrazolo[3,
4-B]pyridine-4- Carboxylic Acid.
pdb|3O84|B Chain B, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
6-Phenyl-1-(Pyridin-4-Ylmethyl)-1h-Pyrazolo[3,
4-B]pyridine-4- Carboxylic Acid.
pdb|3U16|A Chain A, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
6-(P-Benzyloxy)phenyl-1-(Pyridin-4-Ylmethyl)-1h-
Pyrazolo[3,4- B]pyridine-4-Carboxylic Acid.
pdb|3U16|B Chain B, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
6-(P-Benzyloxy)phenyl-1-(Pyridin-4-Ylmethyl)-1h-
Pyrazolo[3,4- B]pyridine-4-Carboxylic Acid.
pdb|3U17|A Chain A, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
6-(P-Benzoyl)phenyl-1-(Pyridin-4-Ylmethyl)-1h-
Pyrazolo[3,4- B]pyridine-4-Carboxylic Acid
pdb|3U17|B Chain B, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
6-(P-Benzoyl)phenyl-1-(Pyridin-4-Ylmethyl)-1h-
Pyrazolo[3,4- B]pyridine-4-Carboxylic Acid
Length = 544
Score = 26.6 bits (57), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 21/76 (27%), Positives = 33/76 (43%), Gaps = 10/76 (13%)
Query: 9 NFVELERLLRNGLPGCLASLFIEN-----NSCLIFLDGLTEFIFVFFARAMGGSVPFEEA 63
+++EL+RL N LA+ E ++ L+ L + EF VFFA G V
Sbjct: 57 SYIELDRLSTN-----LATRLAEKGLGKGDTALVQLPNVAEFYIVFFALLKAGVVVLNAL 111
Query: 64 LAARLSLFKPSLSQVQ 79
+ R + Q+Q
Sbjct: 112 YSHRQYELNAFIKQIQ 127
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.325 0.142 0.410
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,901,233
Number of Sequences: 62578
Number of extensions: 172589
Number of successful extensions: 556
Number of sequences better than 100.0: 18
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 14
Number of HSP's that attempted gapping in prelim test: 552
Number of HSP's gapped (non-prelim): 18
length of query: 192
length of database: 14,973,337
effective HSP length: 93
effective length of query: 99
effective length of database: 9,153,583
effective search space: 906204717
effective search space used: 906204717
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 49 (23.5 bits)