Query 029504
Match_columns 192
No_of_seqs 120 out of 1470
Neff 9.6
Searched_HMMs 46136
Date Fri Mar 29 13:58:18 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029504.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/029504hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1615 Phosphoserine phosphat 100.0 1.5E-30 3.3E-35 186.0 17.9 176 11-189 7-189 (227)
2 PLN02954 phosphoserine phospha 100.0 1.6E-26 3.5E-31 175.5 20.0 180 9-191 1-187 (224)
3 COG0560 SerB Phosphoserine pho 99.9 1.6E-25 3.5E-30 168.0 17.3 166 18-191 3-178 (212)
4 TIGR01488 HAD-SF-IB Haloacid D 99.9 2.4E-24 5.1E-29 157.8 17.2 165 22-192 1-177 (177)
5 PRK11133 serB phosphoserine ph 99.9 7.7E-24 1.7E-28 167.9 18.6 165 18-191 108-282 (322)
6 TIGR00338 serB phosphoserine p 99.9 5.5E-23 1.2E-27 155.6 17.7 170 13-191 7-186 (219)
7 TIGR01491 HAD-SF-IB-PSPlk HAD- 99.9 8.6E-22 1.9E-26 146.9 17.0 164 19-191 3-181 (201)
8 PRK09552 mtnX 2-hydroxy-3-keto 99.9 1.3E-21 2.9E-26 148.2 17.5 164 19-191 2-178 (219)
9 TIGR02137 HSK-PSP phosphoserin 99.9 3.2E-21 7E-26 144.1 16.1 156 21-191 2-162 (203)
10 TIGR03333 salvage_mtnX 2-hydro 99.9 6E-20 1.3E-24 138.7 18.0 160 23-191 2-174 (214)
11 TIGR01490 HAD-SF-IB-hyp1 HAD-s 99.9 7.2E-20 1.6E-24 136.8 16.5 102 87-191 86-189 (202)
12 TIGR01489 DKMTPPase-SF 2,3-dik 99.8 3E-19 6.5E-24 131.8 16.9 164 22-191 3-180 (188)
13 PRK13582 thrH phosphoserine ph 99.8 3.6E-19 7.9E-24 133.3 16.1 157 20-191 1-162 (205)
14 PF06888 Put_Phosphatase: Puta 99.8 1.1E-18 2.3E-23 132.1 15.8 162 22-190 2-186 (234)
15 COG4359 Uncharacterized conser 99.8 1.8E-18 3.8E-23 123.2 14.5 164 21-191 4-177 (220)
16 TIGR01545 YfhB_g-proteo haloac 99.8 3E-17 6.5E-22 123.4 15.2 98 88-191 94-193 (210)
17 COG0546 Gph Predicted phosphat 99.8 1.1E-17 2.4E-22 126.8 12.8 91 87-191 88-180 (220)
18 PRK13288 pyrophosphatase PpaX; 99.8 1.3E-17 2.9E-22 125.8 12.7 91 87-191 81-173 (214)
19 TIGR01544 HAD-SF-IE haloacid d 99.8 8.4E-17 1.8E-21 124.3 16.7 126 63-190 93-228 (277)
20 PLN02770 haloacid dehalogenase 99.7 4E-17 8.6E-22 125.9 13.7 91 87-191 107-199 (248)
21 PRK11590 hypothetical protein; 99.7 5.8E-17 1.3E-21 122.1 12.8 98 88-191 95-194 (211)
22 PRK10826 2-deoxyglucose-6-phos 99.7 1.8E-16 3.9E-21 120.2 14.4 91 87-191 91-183 (222)
23 KOG3120 Predicted haloacid deh 99.7 5.3E-17 1.1E-21 118.9 10.6 166 19-190 12-199 (256)
24 PLN03243 haloacid dehalogenase 99.7 1.2E-16 2.5E-21 123.9 13.2 91 87-191 108-200 (260)
25 PRK13226 phosphoglycolate phos 99.7 2.9E-16 6.3E-21 119.7 14.1 91 87-191 94-186 (229)
26 PRK14988 GMP/IMP nucleotidase; 99.7 4E-16 8.7E-21 118.6 13.5 91 87-191 92-184 (224)
27 TIGR02009 PGMB-YQAB-SF beta-ph 99.7 6.2E-16 1.3E-20 113.8 14.2 89 87-191 87-177 (185)
28 PRK13225 phosphoglycolate phos 99.7 4.1E-16 8.8E-21 121.7 13.6 88 87-191 141-230 (273)
29 PLN02575 haloacid dehalogenase 99.7 8.1E-16 1.8E-20 123.9 14.9 91 87-191 215-307 (381)
30 TIGR01449 PGP_bact 2-phosphogl 99.7 9.1E-16 2E-20 115.4 14.4 91 87-191 84-176 (213)
31 TIGR01428 HAD_type_II 2-haloal 99.7 2E-15 4.2E-20 112.6 15.4 91 87-191 91-183 (198)
32 PRK11587 putative phosphatase; 99.7 1.8E-15 4E-20 114.5 14.8 90 87-191 82-173 (218)
33 TIGR01454 AHBA_synth_RP 3-amin 99.7 1.4E-15 3E-20 114.0 13.0 91 87-191 74-166 (205)
34 TIGR03351 PhnX-like phosphonat 99.7 1.6E-15 3.5E-20 114.8 13.5 93 87-191 86-181 (220)
35 PRK09449 dUMP phosphatase; Pro 99.7 3.5E-15 7.6E-20 113.2 15.2 90 87-191 94-187 (224)
36 TIGR02253 CTE7 HAD superfamily 99.7 2.1E-15 4.5E-20 114.2 13.6 91 87-191 93-186 (221)
37 PRK13223 phosphoglycolate phos 99.7 6.1E-16 1.3E-20 120.8 10.8 91 87-191 100-192 (272)
38 PRK13222 phosphoglycolate phos 99.7 4.8E-15 1E-19 112.4 15.2 91 87-191 92-184 (226)
39 PRK06698 bifunctional 5'-methy 99.7 2E-15 4.4E-20 125.9 13.5 90 87-191 329-418 (459)
40 PRK13478 phosphonoacetaldehyde 99.6 2.9E-15 6.4E-20 116.7 12.1 92 87-191 100-194 (267)
41 TIGR01548 HAD-SF-IA-hyp1 haloa 99.6 7.4E-15 1.6E-19 109.4 13.8 88 89-191 107-196 (197)
42 TIGR01422 phosphonatase phosph 99.6 2.2E-15 4.8E-20 116.5 11.3 91 87-191 98-192 (253)
43 TIGR01990 bPGM beta-phosphoglu 99.6 8.6E-15 1.9E-19 107.7 13.9 89 87-191 86-176 (185)
44 COG0637 Predicted phosphatase/ 99.6 9.3E-15 2E-19 110.8 13.5 91 87-191 85-177 (221)
45 PLN02940 riboflavin kinase 99.6 9.3E-15 2E-19 119.1 14.1 91 87-191 92-185 (382)
46 TIGR02254 YjjG/YfnB HAD superf 99.6 8E-15 1.7E-19 111.0 12.9 90 87-191 96-189 (224)
47 PRK10563 6-phosphogluconate ph 99.6 1.8E-14 4E-19 109.1 14.3 89 87-191 87-177 (221)
48 PF12710 HAD: haloacid dehalog 99.6 3.1E-15 6.8E-20 110.6 9.7 96 91-190 92-192 (192)
49 PRK10725 fructose-1-P/6-phosph 99.6 2E-14 4.3E-19 106.2 13.9 89 87-191 87-177 (188)
50 PRK09456 ?-D-glucose-1-phospha 99.6 2.4E-14 5.1E-19 106.9 13.1 154 21-191 1-176 (199)
51 PF13419 HAD_2: Haloacid dehal 99.6 9.5E-15 2.1E-19 105.9 9.4 93 85-191 74-168 (176)
52 TIGR02252 DREG-2 REG-2-like, H 99.6 4.4E-14 9.6E-19 105.6 12.6 90 87-191 104-196 (203)
53 PLN02779 haloacid dehalogenase 99.6 9E-14 1.9E-18 109.3 13.9 93 87-191 143-237 (286)
54 TIGR02247 HAD-1A3-hyp Epoxide 99.5 1.1E-13 2.3E-18 104.2 11.8 91 87-191 93-187 (211)
55 TIGR01509 HAD-SF-IA-v3 haloaci 99.5 1.6E-13 3.4E-18 100.7 11.4 90 87-191 84-175 (183)
56 TIGR01670 YrbI-phosphatas 3-de 99.5 2.5E-14 5.4E-19 102.6 6.8 73 96-191 36-110 (154)
57 TIGR01993 Pyr-5-nucltdase pyri 99.5 4.2E-13 9.1E-18 98.9 13.5 92 87-191 83-176 (184)
58 TIGR01493 HAD-SF-IA-v2 Haloaci 99.5 2.1E-13 4.6E-18 99.6 11.4 84 87-191 89-174 (175)
59 TIGR01549 HAD-SF-IA-v1 haloaci 99.5 3.5E-13 7.6E-18 96.4 11.8 88 88-191 64-152 (154)
60 TIGR01672 AphA HAD superfamily 99.5 2.1E-13 4.5E-18 103.9 10.6 144 9-191 50-202 (237)
61 cd01427 HAD_like Haloacid deha 99.5 1.2E-13 2.6E-18 95.9 8.5 105 87-191 23-131 (139)
62 PHA02597 30.2 hypothetical pro 99.5 1.5E-13 3.2E-18 102.4 9.3 91 87-191 73-163 (197)
63 TIGR01656 Histidinol-ppas hist 99.5 2.4E-13 5.2E-18 96.8 9.2 93 88-191 27-136 (147)
64 TIGR01662 HAD-SF-IIIA HAD-supe 99.5 3E-13 6.4E-18 94.5 8.9 86 88-191 25-122 (132)
65 COG0561 Cof Predicted hydrolas 99.5 5.7E-13 1.2E-17 103.6 10.7 40 153-192 183-224 (264)
66 PRK10748 flavin mononucleotide 99.5 1.3E-12 2.8E-17 100.2 12.2 85 87-191 112-199 (238)
67 PLN02919 haloacid dehalogenase 99.5 9.9E-13 2.1E-17 118.9 13.3 91 88-191 161-253 (1057)
68 PRK08942 D,D-heptose 1,7-bisph 99.5 3.4E-13 7.4E-18 99.2 8.3 93 88-191 29-138 (181)
69 PRK09484 3-deoxy-D-manno-octul 99.4 1.8E-13 4E-18 100.8 6.2 74 95-191 55-130 (183)
70 TIGR00213 GmhB_yaeD D,D-heptos 99.4 7.1E-13 1.5E-17 97.1 9.0 99 88-191 26-141 (176)
71 TIGR01681 HAD-SF-IIIC HAD-supe 99.4 4.3E-13 9.3E-18 93.3 6.6 85 88-190 29-125 (128)
72 TIGR01261 hisB_Nterm histidino 99.4 8.5E-13 1.8E-17 95.2 7.8 92 88-191 29-138 (161)
73 PRK01158 phosphoglycolate phos 99.4 2.2E-12 4.8E-17 98.2 10.0 38 154-191 152-191 (230)
74 TIGR02726 phenyl_P_delta pheny 99.4 2.7E-13 5.9E-18 98.3 4.6 73 96-191 42-116 (169)
75 PRK08238 hypothetical protein; 99.4 5.9E-12 1.3E-16 105.1 12.3 86 88-191 72-157 (479)
76 COG1011 Predicted hydrolase (H 99.4 2.4E-11 5.3E-16 92.2 14.7 90 87-191 98-190 (229)
77 PRK15126 thiamin pyrimidine py 99.4 4E-12 8.7E-17 99.3 10.6 39 153-191 182-222 (272)
78 TIGR01487 SPP-like sucrose-pho 99.4 4.6E-12 9.9E-17 95.7 10.2 39 154-192 142-182 (215)
79 PRK10976 putative hydrolase; P 99.4 4.5E-12 9.7E-17 98.6 10.3 39 154-192 185-225 (266)
80 PRK10513 sugar phosphate phosp 99.4 5.5E-12 1.2E-16 98.3 10.6 39 154-192 191-231 (270)
81 PRK06769 hypothetical protein; 99.3 4.5E-12 9.8E-17 92.6 8.3 91 88-191 28-128 (173)
82 TIGR01664 DNA-3'-Pase DNA 3'-p 99.3 4.4E-12 9.5E-17 92.0 8.1 87 89-191 43-153 (166)
83 PRK10530 pyridoxal phosphate ( 99.3 1.3E-11 2.9E-16 96.1 10.6 38 154-191 194-233 (272)
84 TIGR01685 MDP-1 magnesium-depe 99.3 1.3E-12 2.9E-17 95.0 2.9 91 87-191 44-148 (174)
85 PF08282 Hydrolase_3: haloacid 99.3 1.7E-11 3.8E-16 93.7 9.2 40 89-128 16-55 (254)
86 PLN02811 hydrolase 99.3 8.2E-11 1.8E-15 89.1 12.8 93 87-191 77-175 (220)
87 PLN02887 hydrolase family prot 99.3 3.4E-11 7.4E-16 102.4 11.3 39 154-192 502-542 (580)
88 TIGR01691 enolase-ppase 2,3-di 99.3 1.8E-10 3.9E-15 87.1 13.1 89 87-191 94-187 (220)
89 TIGR01482 SPP-subfamily Sucros 99.3 6.3E-11 1.4E-15 89.8 10.4 38 154-191 144-183 (225)
90 PRK11009 aphA acid phosphatase 99.2 7.3E-11 1.6E-15 90.0 10.1 86 87-191 113-202 (237)
91 PLN02177 glycerol-3-phosphate 99.2 1.9E-10 4E-15 96.4 12.8 94 89-191 111-206 (497)
92 PRK03669 mannosyl-3-phosphogly 99.2 9.9E-11 2.2E-15 91.4 10.3 40 153-192 181-225 (271)
93 PRK05446 imidazole glycerol-ph 99.2 6.1E-11 1.3E-15 95.2 8.6 94 87-191 29-139 (354)
94 TIGR01668 YqeG_hyp_ppase HAD s 99.2 1E-10 2.2E-15 85.2 7.7 81 88-191 43-127 (170)
95 TIGR01533 lipo_e_P4 5'-nucleot 99.2 4.2E-10 9.2E-15 87.1 11.6 127 19-189 74-204 (266)
96 TIGR00099 Cof-subfamily Cof su 99.2 2.9E-10 6.3E-15 88.0 10.7 38 154-191 183-222 (256)
97 PF00702 Hydrolase: haloacid d 99.2 8.8E-11 1.9E-15 88.1 7.5 86 88-192 127-214 (215)
98 TIGR01686 FkbH FkbH-like domai 99.2 1.3E-10 2.7E-15 92.9 7.8 85 88-191 31-121 (320)
99 PRK00192 mannosyl-3-phosphogly 99.2 3.8E-10 8.3E-15 88.2 10.4 38 154-192 186-226 (273)
100 PRK12702 mannosyl-3-phosphogly 99.1 8.3E-10 1.8E-14 85.8 10.6 35 157-191 206-244 (302)
101 TIGR02463 MPGP_rel mannosyl-3- 99.1 8.2E-10 1.8E-14 83.6 10.4 40 153-192 173-214 (221)
102 COG1778 Low specificity phosph 99.1 1.1E-10 2.4E-15 81.6 3.8 72 96-190 43-116 (170)
103 TIGR01485 SPP_plant-cyano sucr 99.1 9.2E-10 2E-14 85.0 8.7 39 153-191 161-201 (249)
104 PF05822 UMPH-1: Pyrimidine 5' 99.0 9.9E-09 2.2E-13 78.0 13.5 115 74-190 76-196 (246)
105 TIGR02461 osmo_MPG_phos mannos 99.0 5.7E-09 1.2E-13 79.4 11.1 36 157-192 179-218 (225)
106 TIGR01512 ATPase-IB2_Cd heavy 99.0 1E-09 2.2E-14 93.5 7.7 82 87-191 361-443 (536)
107 COG2217 ZntA Cation transport 99.0 1.2E-09 2.7E-14 94.7 8.2 82 87-191 536-617 (713)
108 TIGR01525 ATPase-IB_hvy heavy 99.0 1.3E-09 2.9E-14 93.2 8.1 82 87-191 383-465 (556)
109 TIGR01484 HAD-SF-IIB HAD-super 99.0 4.3E-09 9.3E-14 78.7 9.1 38 154-191 158-197 (204)
110 PHA02530 pseT polynucleotide k 99.0 1.5E-09 3.1E-14 86.0 6.6 98 87-191 186-287 (300)
111 TIGR01663 PNK-3'Pase polynucle 99.0 2E-09 4.2E-14 90.7 7.5 85 89-189 198-300 (526)
112 TIGR01511 ATPase-IB1_Cu copper 99.0 3.7E-09 8E-14 90.5 9.1 81 87-191 404-484 (562)
113 KOG2914 Predicted haloacid-hal 98.9 3.1E-08 6.8E-13 74.6 12.6 93 87-191 91-187 (222)
114 PRK10187 trehalose-6-phosphate 98.9 6.3E-09 1.4E-13 81.1 9.2 38 154-191 169-208 (266)
115 smart00577 CPDc catalytic doma 98.9 1.8E-09 3.9E-14 76.9 5.4 87 87-190 44-132 (148)
116 TIGR01459 HAD-SF-IIA-hyp4 HAD- 98.9 5.2E-09 1.1E-13 80.5 8.0 83 88-189 24-111 (242)
117 TIGR01497 kdpB K+-transporting 98.9 4.2E-09 9E-14 91.1 7.9 81 88-191 446-526 (675)
118 TIGR01486 HAD-SF-IIB-MPGP mann 98.9 2.3E-08 5.1E-13 77.4 11.2 40 153-192 170-213 (256)
119 TIGR02471 sucr_syn_bact_C sucr 98.9 2.5E-08 5.3E-13 76.4 10.8 39 153-191 153-193 (236)
120 PRK01122 potassium-transportin 98.9 7E-09 1.5E-13 89.9 8.0 81 88-191 445-525 (679)
121 PTZ00174 phosphomannomutase; P 98.9 2.4E-08 5.2E-13 77.0 10.3 37 153-191 182-222 (247)
122 PRK14010 potassium-transportin 98.9 7.1E-09 1.5E-13 89.7 7.8 81 88-191 441-521 (673)
123 KOG3085 Predicted hydrolase (H 98.8 3E-08 6.5E-13 75.1 9.5 91 86-191 111-204 (237)
124 PRK10671 copA copper exporting 98.8 1.3E-08 2.7E-13 91.0 8.1 82 87-191 649-730 (834)
125 PRK14502 bifunctional mannosyl 98.8 3.4E-08 7.3E-13 84.7 10.2 36 157-192 611-650 (694)
126 COG0241 HisB Histidinol phosph 98.8 6.7E-08 1.5E-12 70.4 8.7 92 88-190 31-139 (181)
127 COG4087 Soluble P-type ATPase 98.7 3.5E-08 7.6E-13 67.1 5.9 83 87-191 29-111 (152)
128 PLN02645 phosphoglycolate phos 98.7 9.8E-08 2.1E-12 76.1 9.3 76 1-128 9-87 (311)
129 PLN02382 probable sucrose-phos 98.7 1.6E-07 3.4E-12 77.6 10.6 40 152-191 168-212 (413)
130 TIGR01647 ATPase-IIIA_H plasma 98.7 6.1E-08 1.3E-12 85.7 8.5 102 88-192 442-553 (755)
131 PRK11033 zntA zinc/cadmium/mer 98.7 4.4E-08 9.6E-13 86.4 7.6 79 88-191 568-646 (741)
132 TIGR01684 viral_ppase viral ph 98.7 4.6E-08 9.9E-13 76.1 6.4 44 89-134 146-190 (301)
133 COG2179 Predicted hydrolase of 98.7 1.2E-07 2.5E-12 67.4 7.8 80 88-190 46-128 (175)
134 TIGR01524 ATPase-IIIB_Mg magne 98.7 1E-07 2.2E-12 85.4 9.1 97 88-192 515-621 (867)
135 COG4030 Uncharacterized protei 98.7 4E-07 8.7E-12 67.8 10.5 114 76-191 72-224 (315)
136 KOG0207 Cation transport ATPas 98.7 1.2E-07 2.7E-12 82.6 8.8 81 87-190 722-802 (951)
137 TIGR01522 ATPase-IIA2_Ca golgi 98.7 9.5E-08 2.1E-12 85.9 8.5 95 88-192 528-636 (884)
138 TIGR02244 HAD-IG-Ncltidse HAD 98.7 7.8E-07 1.7E-11 71.3 12.8 102 87-190 183-312 (343)
139 PF05116 S6PP: Sucrose-6F-phos 98.6 2.8E-07 6.1E-12 71.1 9.8 37 154-190 160-198 (247)
140 PRK15122 magnesium-transportin 98.6 1.1E-07 2.4E-12 85.5 8.2 96 88-192 550-656 (903)
141 PRK10517 magnesium-transportin 98.6 1.3E-07 2.8E-12 85.0 8.4 97 88-192 550-656 (902)
142 TIGR01517 ATPase-IIB_Ca plasma 98.6 1.5E-07 3.3E-12 85.1 8.8 96 88-192 579-687 (941)
143 smart00775 LNS2 LNS2 domain. T 98.6 4.9E-07 1.1E-11 65.0 9.6 95 88-188 27-134 (157)
144 PRK14501 putative bifunctional 98.6 2.7E-07 5.8E-12 81.5 9.7 38 154-191 652-689 (726)
145 TIGR01675 plant-AP plant acid 98.5 2.5E-06 5.3E-11 64.7 12.2 132 19-188 76-211 (229)
146 TIGR01523 ATPase-IID_K-Na pota 98.5 2.2E-07 4.7E-12 84.7 7.7 104 87-192 645-764 (1053)
147 KOG3109 Haloacid dehalogenase- 98.5 2.3E-06 5E-11 63.5 11.1 107 75-191 83-196 (244)
148 PHA03398 viral phosphatase sup 98.5 1.8E-07 3.9E-12 72.9 5.4 44 89-134 148-192 (303)
149 TIGR01116 ATPase-IIA1_Ca sarco 98.5 4.2E-07 9.2E-12 82.0 8.4 97 88-192 537-649 (917)
150 COG0474 MgtA Cation transport 98.5 3.6E-07 7.8E-12 82.4 7.9 103 87-192 546-657 (917)
151 PRK10444 UMP phosphatase; Prov 98.5 1.4E-06 3E-11 67.3 10.1 33 159-191 175-210 (248)
152 TIGR00685 T6PP trehalose-phosp 98.5 6E-07 1.3E-11 69.1 7.0 38 154-191 162-201 (244)
153 TIGR01457 HAD-SF-IIA-hyp2 HAD- 98.4 7.9E-07 1.7E-11 68.7 7.4 33 159-191 179-214 (249)
154 PLN02423 phosphomannomutase 98.4 2.7E-06 5.8E-11 65.6 9.9 36 153-191 183-222 (245)
155 PF03767 Acid_phosphat_B: HAD 98.4 9.2E-07 2E-11 67.4 6.3 133 19-188 71-207 (229)
156 PF12689 Acid_PPase: Acid Phos 98.4 5.9E-07 1.3E-11 65.0 4.6 89 87-184 44-135 (169)
157 TIGR01106 ATPase-IIC_X-K sodiu 98.3 2.3E-06 5E-11 78.0 8.7 103 88-192 568-702 (997)
158 PLN02205 alpha,alpha-trehalose 98.3 4.6E-06 1E-10 74.5 9.3 38 154-191 757-799 (854)
159 PLN02499 glycerol-3-phosphate 98.3 8E-05 1.7E-09 62.2 15.3 84 96-187 101-186 (498)
160 PF08645 PNK3P: Polynucleotide 98.2 6.1E-07 1.3E-11 64.6 2.5 81 89-185 30-130 (159)
161 TIGR01652 ATPase-Plipid phosph 98.2 3E-06 6.6E-11 77.7 7.5 103 87-192 630-787 (1057)
162 TIGR01680 Veg_Stor_Prot vegeta 98.2 2.5E-05 5.4E-10 60.4 11.2 133 19-188 100-237 (275)
163 PF09419 PGP_phosphatase: Mito 98.2 9.7E-06 2.1E-10 58.6 7.8 83 88-190 59-154 (168)
164 PF13344 Hydrolase_6: Haloacid 98.2 1.5E-05 3.3E-10 52.9 8.1 41 88-128 14-57 (101)
165 TIGR01657 P-ATPase-V P-type AT 98.2 6.2E-06 1.3E-10 75.6 8.3 41 88-128 656-696 (1054)
166 COG4996 Predicted phosphatase 98.2 5.5E-06 1.2E-10 56.6 5.6 79 87-183 40-126 (164)
167 TIGR01494 ATPase_P-type ATPase 98.2 7.8E-06 1.7E-10 69.3 7.7 78 88-191 347-424 (499)
168 KOG0202 Ca2+ transporting ATPa 98.1 1.4E-05 3.1E-10 69.6 8.6 96 87-191 583-695 (972)
169 COG2503 Predicted secreted aci 98.1 4.5E-05 9.7E-10 57.6 10.0 125 20-188 79-208 (274)
170 KOG0206 P-type ATPase [General 98.1 8.4E-06 1.8E-10 74.0 7.0 43 86-128 649-691 (1151)
171 PTZ00445 p36-lilke protein; Pr 98.1 3.6E-05 7.9E-10 57.2 9.1 102 88-191 75-196 (219)
172 KOG3128 Uncharacterized conser 98.1 2.3E-06 4.9E-11 64.7 2.3 114 75-190 125-245 (298)
173 PLN02580 trehalose-phosphatase 98.1 3.1E-05 6.8E-10 63.0 9.0 38 154-191 295-338 (384)
174 COG3769 Predicted hydrolase (H 98.0 2.3E-05 5E-10 58.3 7.2 33 158-190 190-226 (274)
175 TIGR01452 PGP_euk phosphoglyco 98.0 5E-05 1.1E-09 59.6 8.9 40 89-128 19-61 (279)
176 TIGR02251 HIF-SF_euk Dullard-l 98.0 1.9E-05 4E-10 57.1 5.5 87 87-190 41-129 (162)
177 PLN03190 aminophospholipid tra 98.0 1.8E-05 3.8E-10 73.1 6.6 42 87-128 725-766 (1178)
178 COG2216 KdpB High-affinity K+ 97.9 3.9E-05 8.5E-10 63.8 6.7 81 88-191 447-527 (681)
179 TIGR01689 EcbF-BcbF capsule bi 97.8 7.2E-05 1.6E-09 51.6 6.3 42 88-129 24-80 (126)
180 PF11019 DUF2608: Protein of u 97.7 0.0013 2.8E-08 50.9 12.7 101 88-189 81-194 (252)
181 TIGR01459 HAD-SF-IIA-hyp4 HAD- 97.7 1.1E-05 2.4E-10 62.0 1.3 89 90-191 140-232 (242)
182 PF08235 LNS2: LNS2 (Lipin/Ned 97.7 0.00039 8.4E-09 49.6 8.8 96 88-188 27-134 (157)
183 KOG0204 Calcium transporting A 97.7 0.0002 4.4E-09 62.8 8.5 101 87-192 646-757 (1034)
184 TIGR01458 HAD-SF-IIA-hyp3 HAD- 97.6 1.5E-05 3.2E-10 61.9 0.7 92 89-191 121-215 (257)
185 TIGR01458 HAD-SF-IIA-hyp3 HAD- 97.5 0.00017 3.6E-09 56.1 5.1 41 89-129 22-65 (257)
186 TIGR01452 PGP_euk phosphoglyco 97.5 2.7E-05 5.8E-10 61.2 0.6 91 89-191 144-238 (279)
187 KOG0210 P-type ATPase [Inorgan 97.5 0.0002 4.4E-09 61.6 5.5 102 87-191 657-799 (1051)
188 COG0647 NagD Predicted sugar p 97.5 0.00018 4E-09 55.9 4.6 31 88-118 24-54 (269)
189 PLN03017 trehalose-phosphatase 97.4 0.0015 3.4E-08 52.9 9.6 34 157-190 281-319 (366)
190 COG4229 Predicted enolase-phos 97.4 0.0053 1.2E-07 44.7 11.1 92 86-191 101-195 (229)
191 PF06941 NT5C: 5' nucleotidase 97.3 0.0008 1.7E-08 49.8 6.4 28 87-114 72-99 (191)
192 PF02358 Trehalose_PPase: Treh 97.3 0.00065 1.4E-08 52.0 6.0 38 154-191 160-202 (235)
193 COG3700 AphA Acid phosphatase 97.1 0.00079 1.7E-08 48.7 4.5 85 88-191 114-202 (237)
194 TIGR02250 FCP1_euk FCP1-like p 97.0 0.0027 5.8E-08 45.6 6.4 48 87-136 57-104 (156)
195 COG1877 OtsB Trehalose-6-phosp 96.9 0.0086 1.9E-07 46.6 8.7 40 88-127 40-80 (266)
196 PF03031 NIF: NLI interacting 96.7 0.00073 1.6E-08 48.4 1.5 48 87-136 35-82 (159)
197 TIGR02245 HAD_IIID1 HAD-superf 96.7 0.0025 5.4E-08 47.3 3.9 40 88-128 45-84 (195)
198 PF05152 DUF705: Protein of un 96.4 0.0096 2.1E-07 46.3 6.0 47 89-137 143-189 (297)
199 PLN03064 alpha,alpha-trehalose 96.4 0.057 1.2E-06 49.2 11.6 40 87-126 621-661 (934)
200 KOG0209 P-type ATPase [Inorgan 96.4 0.0068 1.5E-07 53.5 5.6 41 88-128 675-715 (1160)
201 PF13242 Hydrolase_like: HAD-h 96.4 0.0037 8.1E-08 38.9 2.9 32 160-191 6-40 (75)
202 TIGR01456 CECR5 HAD-superfamil 96.3 0.0079 1.7E-07 48.3 5.3 17 174-190 264-281 (321)
203 TIGR01460 HAD-SF-IIA Haloacid 96.3 0.0066 1.4E-07 46.5 4.4 33 159-191 189-225 (236)
204 PF05761 5_nucleotid: 5' nucle 96.2 0.015 3.4E-07 48.6 6.4 38 88-125 183-220 (448)
205 KOG2116 Protein involved in pl 96.0 0.027 5.7E-07 48.6 6.8 128 18-187 528-664 (738)
206 COG3882 FkbH Predicted enzyme 95.9 0.021 4.5E-07 47.7 5.8 86 88-188 255-342 (574)
207 PLN02645 phosphoglycolate phos 95.8 0.0041 9E-08 49.6 1.3 32 160-191 232-266 (311)
208 PLN02151 trehalose-phosphatase 95.5 0.018 4E-07 46.6 3.9 36 88-124 120-155 (354)
209 KOG0203 Na+/K+ ATPase, alpha s 95.3 0.0094 2E-07 52.7 1.9 43 87-129 589-631 (1019)
210 KOG2882 p-Nitrophenyl phosphat 94.4 0.14 3E-06 40.3 5.9 58 13-122 15-72 (306)
211 KOG0208 Cation transport ATPas 94.3 0.23 5E-06 45.1 7.7 42 88-129 705-746 (1140)
212 KOG4549 Magnesium-dependent ph 94.2 0.28 6E-06 33.7 6.3 88 87-184 43-133 (144)
213 COG4850 Uncharacterized conser 93.0 0.56 1.2E-05 37.5 7.2 93 87-187 195-292 (373)
214 COG5083 SMP2 Uncharacterized p 91.8 0.39 8.5E-06 39.9 5.1 30 159-188 478-509 (580)
215 PLN03063 alpha,alpha-trehalose 91.0 0.27 6E-06 44.4 3.8 39 88-126 532-571 (797)
216 PF14336 DUF4392: Domain of un 90.5 3.2 7E-05 32.9 9.0 39 90-128 62-101 (291)
217 TIGR01460 HAD-SF-IIA Haloacid 90.3 0.24 5.3E-06 37.8 2.6 12 23-37 1-12 (236)
218 KOG0205 Plasma membrane H+-tra 90.3 0.6 1.3E-05 40.9 5.0 101 88-191 492-602 (942)
219 PF06014 DUF910: Bacterial pro 89.0 0.13 2.8E-06 30.6 0.1 26 163-190 6-31 (62)
220 COG5663 Uncharacterized conser 88.8 0.89 1.9E-05 32.9 4.2 28 88-116 72-99 (194)
221 COG0731 Fe-S oxidoreductases [ 87.9 2.1 4.5E-05 34.0 6.2 40 85-127 89-129 (296)
222 KOG3189 Phosphomannomutase [Li 87.6 5.5 0.00012 29.8 7.8 33 154-187 188-224 (252)
223 TIGR02468 sucrsPsyn_pln sucros 87.1 2 4.4E-05 39.9 6.5 63 115-188 923-989 (1050)
224 KOG2961 Predicted hydrolase (H 86.7 5 0.00011 28.7 6.8 82 89-190 62-157 (190)
225 PF00702 Hydrolase: haloacid d 84.8 0.34 7.3E-06 35.8 0.4 15 20-37 1-15 (215)
226 PF09949 DUF2183: Uncharacteri 84.7 9 0.0002 25.2 7.5 74 107-188 2-80 (100)
227 COG4483 Uncharacterized protei 83.1 0.75 1.6E-05 27.5 1.3 26 163-190 6-31 (68)
228 KOG2470 Similar to IMP-GMP spe 82.8 1.5 3.3E-05 35.6 3.3 35 90-124 242-276 (510)
229 KOG1618 Predicted phosphatase 82.5 5.8 0.00013 31.9 6.3 41 88-128 51-99 (389)
230 PLN02588 glycerol-3-phosphate 81.7 2 4.4E-05 36.6 3.8 81 89-182 134-218 (525)
231 KOG2630 Enolase-phosphatase E- 81.4 8.1 0.00018 29.5 6.5 91 87-191 122-215 (254)
232 PF00875 DNA_photolyase: DNA p 80.6 8.3 0.00018 27.5 6.3 77 89-182 51-127 (165)
233 PLN02151 trehalose-phosphatase 76.5 2.6 5.6E-05 34.4 2.9 34 157-190 267-305 (354)
234 PRK13762 tRNA-modifying enzyme 73.9 4.4 9.6E-05 32.6 3.6 30 86-115 140-169 (322)
235 COG0647 NagD Predicted sugar p 71.0 5.1 0.00011 31.5 3.2 30 161-190 193-225 (269)
236 TIGR01658 EYA-cons_domain eyes 69.4 31 0.00067 26.8 6.9 33 158-190 213-247 (274)
237 KOG2469 IMP-GMP specific 5'-nu 67.8 31 0.00067 28.7 7.0 91 92-184 202-315 (424)
238 KOG0541 Alkyl hydroperoxide re 67.2 27 0.00059 25.1 5.8 55 89-147 63-118 (171)
239 KOG2882 p-Nitrophenyl phosphat 67.1 8.6 0.00019 30.6 3.7 30 161-190 227-259 (306)
240 TIGR03556 photolyase_8HDF deox 66.6 27 0.00059 29.7 6.9 46 89-136 53-98 (471)
241 PF04123 DUF373: Domain of unk 66.4 30 0.00065 28.2 6.8 28 162-189 88-115 (344)
242 PRK10076 pyruvate formate lyas 65.9 14 0.0003 27.9 4.6 38 87-124 49-89 (213)
243 KOG0323 TFIIF-interacting CTD 65.3 32 0.00069 30.5 7.1 50 87-138 200-249 (635)
244 COG4502 5'(3')-deoxyribonucleo 63.5 20 0.00043 25.3 4.5 45 81-128 63-113 (180)
245 COG5610 Predicted hydrolase (H 62.8 46 0.001 28.4 7.2 88 89-190 100-192 (635)
246 TIGR02765 crypto_DASH cryptoch 62.0 17 0.00037 30.4 4.9 45 89-135 59-103 (429)
247 TIGR03365 Bsubt_queE 7-cyano-7 62.0 9 0.0002 29.4 3.0 30 87-116 83-112 (238)
248 smart00577 CPDc catalytic doma 61.2 3.6 7.7E-05 28.9 0.6 15 20-37 2-16 (148)
249 TIGR02766 crypt_chrom_pln cryp 60.2 40 0.00087 28.7 6.8 68 89-173 49-117 (475)
250 PF08444 Gly_acyl_tr_C: Aralky 59.4 23 0.00051 22.8 4.0 36 93-128 41-76 (89)
251 TIGR01456 CECR5 HAD-superfamil 59.4 5.1 0.00011 32.2 1.3 13 22-37 2-14 (321)
252 COG0678 AHP1 Peroxiredoxin [Po 58.1 33 0.00072 24.5 4.9 40 89-128 57-97 (165)
253 PF06189 5-nucleotidase: 5'-nu 58.0 65 0.0014 25.2 6.9 41 89-129 165-214 (264)
254 TIGR03470 HpnH hopanoid biosyn 57.2 13 0.00028 29.8 3.3 30 86-115 82-111 (318)
255 PF06437 ISN1: IMP-specific 5' 56.5 24 0.00052 29.2 4.6 16 19-37 146-161 (408)
256 TIGR02251 HIF-SF_euk Dullard-l 55.8 5.3 0.00011 28.6 0.7 15 20-37 1-15 (162)
257 cd05014 SIS_Kpsf KpsF-like pro 55.5 13 0.00028 25.0 2.6 33 89-121 59-91 (128)
258 TIGR02826 RNR_activ_nrdG3 anae 55.4 38 0.00081 23.9 5.0 36 89-124 73-109 (147)
259 PF13911 AhpC-TSA_2: AhpC/TSA 55.3 46 0.001 21.9 5.3 36 95-130 4-39 (115)
260 TIGR02495 NrdG2 anaerobic ribo 54.7 52 0.0011 23.9 5.9 29 87-115 73-101 (191)
261 cd05008 SIS_GlmS_GlmD_1 SIS (S 53.4 25 0.00053 23.5 3.8 32 89-120 58-89 (126)
262 PF00578 AhpC-TSA: AhpC/TSA fa 53.2 37 0.00081 22.3 4.6 38 91-128 46-83 (124)
263 TIGR02250 FCP1_euk FCP1-like p 51.1 7.2 0.00015 27.8 0.8 16 19-37 5-20 (156)
264 TIGR02109 PQQ_syn_pqqE coenzym 51.1 21 0.00045 29.0 3.5 42 86-128 63-107 (358)
265 TIGR00591 phr2 photolyase PhrI 51.0 33 0.00072 28.9 4.9 45 89-135 76-120 (454)
266 KOG2832 TFIIF-interacting CTD 50.4 59 0.0013 26.8 5.8 46 89-137 215-260 (393)
267 cd05710 SIS_1 A subgroup of th 48.4 23 0.0005 23.7 3.0 32 89-120 59-90 (120)
268 COG0415 PhrB Deoxyribodipyrimi 48.1 1.3E+02 0.0029 25.7 7.8 44 91-136 55-98 (461)
269 PRK05301 pyrroloquinoline quin 47.9 27 0.00058 28.7 3.8 29 86-114 72-100 (378)
270 cd05017 SIS_PGI_PMI_1 The memb 47.6 63 0.0014 21.5 5.0 38 89-128 55-92 (119)
271 TIGR02494 PFLE_PFLC glycyl-rad 47.5 42 0.00091 26.4 4.7 28 87-114 136-164 (295)
272 KOG2134 Polynucleotide kinase 46.5 8.3 0.00018 31.8 0.6 16 19-37 74-89 (422)
273 KOG3040 Predicted sugar phosph 45.3 47 0.001 25.3 4.3 41 89-129 24-67 (262)
274 PF01380 SIS: SIS domain SIS d 45.1 45 0.00097 22.2 4.1 34 89-122 65-98 (131)
275 PRK11145 pflA pyruvate formate 45.1 54 0.0012 25.0 4.9 29 87-115 81-110 (246)
276 TIGR03127 RuMP_HxlB 6-phospho 44.6 27 0.00058 25.2 3.0 34 89-122 84-117 (179)
277 cd05013 SIS_RpiR RpiR-like pro 44.0 40 0.00088 22.5 3.7 30 90-119 73-102 (139)
278 TIGR02493 PFLA pyruvate format 41.8 80 0.0017 23.7 5.4 37 87-123 76-117 (235)
279 PF04312 DUF460: Protein of un 41.3 65 0.0014 22.6 4.2 37 92-128 64-102 (138)
280 cd02072 Glm_B12_BD B12 binding 40.4 70 0.0015 22.1 4.3 46 88-135 62-115 (128)
281 COG2044 Predicted peroxiredoxi 40.3 47 0.001 22.7 3.3 28 87-114 58-85 (120)
282 cd04795 SIS SIS domain. SIS (S 39.8 46 0.001 20.3 3.2 23 89-111 59-81 (87)
283 KOG1154 Gamma-glutamyl kinase 39.7 53 0.0011 25.5 3.9 34 91-124 35-68 (285)
284 cd03018 PRX_AhpE_like Peroxire 39.5 99 0.0021 21.1 5.2 34 94-127 52-85 (149)
285 cd05006 SIS_GmhA Phosphoheptos 38.8 45 0.00098 24.0 3.4 29 89-117 113-141 (177)
286 PRK13937 phosphoheptose isomer 38.3 51 0.0011 24.1 3.7 31 89-119 118-148 (188)
287 TIGR00441 gmhA phosphoheptose 38.1 47 0.001 23.4 3.4 31 89-119 91-121 (154)
288 KOG3040 Predicted sugar phosph 38.1 24 0.00051 26.8 1.8 28 162-189 185-215 (262)
289 KOG3107 Predicted haloacid deh 37.7 2.4E+02 0.0053 23.6 7.8 32 158-189 408-440 (468)
290 COG1180 PflA Pyruvate-formate 35.5 76 0.0017 24.7 4.4 37 88-124 96-134 (260)
291 COG1911 RPL30 Ribosomal protei 35.3 1E+02 0.0023 20.2 4.2 41 88-128 19-63 (100)
292 TIGR03278 methan_mark_10 putat 34.8 61 0.0013 27.1 3.9 41 87-128 85-130 (404)
293 cd05005 SIS_PHI Hexulose-6-pho 34.6 62 0.0013 23.3 3.6 32 89-120 87-118 (179)
294 cd03017 PRX_BCP Peroxiredoxin 34.5 1.4E+02 0.003 20.0 5.3 27 100-126 53-79 (140)
295 PF01113 DapB_N: Dihydrodipico 34.4 94 0.002 21.0 4.3 37 89-125 76-112 (124)
296 PF13704 Glyco_tranf_2_4: Glyc 33.7 1E+02 0.0022 19.4 4.2 35 91-125 5-40 (97)
297 cd02071 MM_CoA_mut_B12_BD meth 33.4 1.5E+02 0.0033 19.8 5.3 44 89-134 63-108 (122)
298 cd04906 ACT_ThrD-I_1 First of 33.1 58 0.0013 20.3 2.8 25 91-115 53-77 (85)
299 PF05240 APOBEC_C: APOBEC-like 32.6 71 0.0015 18.5 2.8 23 91-113 2-24 (55)
300 KOG2599 Pyridoxal/pyridoxine/p 32.2 51 0.0011 26.0 2.8 29 87-115 163-191 (308)
301 PRK00414 gmhA phosphoheptose i 31.6 78 0.0017 23.3 3.7 29 89-117 123-151 (192)
302 PLN03063 alpha,alpha-trehalose 31.6 58 0.0012 29.9 3.5 41 151-191 670-719 (797)
303 PF10113 Fibrillarin_2: Fibril 31.1 74 0.0016 26.8 3.7 29 159-187 206-236 (505)
304 TIGR01501 MthylAspMutase methy 31.0 1.8E+02 0.0039 20.2 5.2 46 88-135 64-117 (134)
305 KOG1605 TFIIF-interacting CTD 30.8 25 0.00054 27.5 1.0 40 87-127 130-169 (262)
306 PF00696 AA_kinase: Amino acid 30.4 1.2E+02 0.0025 22.9 4.7 37 91-128 20-56 (242)
307 PF02593 dTMP_synthase: Thymid 30.4 2.3E+02 0.005 21.6 6.0 68 88-173 59-132 (217)
308 cd01580 AcnA_IRP_Swivel Aconit 30.3 2.1E+02 0.0046 20.8 5.5 41 93-135 84-130 (171)
309 cd01012 YcaC_related YcaC rela 30.2 1.9E+02 0.0042 20.2 6.0 23 89-111 21-43 (157)
310 COG1058 CinA Predicted nucleot 30.1 1.4E+02 0.0031 23.3 5.0 38 91-129 48-90 (255)
311 PHA01735 hypothetical protein 29.9 88 0.0019 19.1 3.0 30 89-118 31-60 (76)
312 PRK10674 deoxyribodipyrimidine 29.8 1.2E+02 0.0025 26.0 4.9 45 89-135 55-103 (472)
313 PF04007 DUF354: Protein of un 29.5 85 0.0018 25.5 3.9 35 93-128 16-50 (335)
314 TIGR02668 moaA_archaeal probab 29.1 72 0.0016 25.1 3.4 28 87-114 67-95 (302)
315 TIGR00640 acid_CoA_mut_C methy 29.0 2E+02 0.0042 19.8 5.2 44 90-135 67-112 (132)
316 PF07611 DUF1574: Protein of u 29.0 1E+02 0.0022 25.2 4.2 36 93-128 254-289 (345)
317 PRK11623 pcnB poly(A) polymera 29.0 70 0.0015 27.4 3.4 31 88-118 50-80 (472)
318 PRK13602 putative ribosomal pr 28.5 1.3E+02 0.0029 18.8 3.9 41 88-128 11-55 (82)
319 PF13580 SIS_2: SIS domain; PD 28.5 71 0.0015 22.0 2.9 24 89-112 115-138 (138)
320 PF01976 DUF116: Protein of un 28.4 71 0.0015 22.9 2.9 35 92-128 74-108 (158)
321 COG0263 ProB Glutamate 5-kinas 28.1 74 0.0016 26.1 3.2 24 91-114 31-54 (369)
322 COG0602 NrdG Organic radical a 27.9 82 0.0018 23.7 3.3 29 88-116 83-111 (212)
323 PRK01018 50S ribosomal protein 27.9 1.4E+02 0.003 19.4 4.1 42 87-128 15-60 (99)
324 PRK13938 phosphoheptose isomer 27.8 96 0.0021 23.0 3.6 30 89-118 125-154 (196)
325 PF05988 DUF899: Bacterial pro 27.5 2.1E+02 0.0046 21.7 5.3 39 91-129 93-131 (211)
326 PRK10671 copA copper exporting 27.0 44 0.00094 30.7 2.0 25 10-37 507-531 (834)
327 cd02971 PRX_family Peroxiredox 26.6 2E+02 0.0043 19.2 4.9 34 92-125 44-77 (140)
328 cd03013 PRX5_like Peroxiredoxi 26.3 2E+02 0.0043 20.2 5.0 37 91-127 51-88 (155)
329 KOG2469 IMP-GMP specific 5'-nu 26.3 38 0.00082 28.2 1.3 17 17-36 24-40 (424)
330 cd01994 Alpha_ANH_like_IV This 26.2 2.7E+02 0.0059 20.5 6.1 24 162-187 79-102 (194)
331 cd02970 PRX_like2 Peroxiredoxi 26.1 2E+02 0.0044 19.3 4.9 38 91-128 44-81 (149)
332 PRK11557 putative DNA-binding 26.0 1E+02 0.0022 23.9 3.7 33 89-121 187-219 (278)
333 PF06342 DUF1057: Alpha/beta h 25.6 2.3E+02 0.0049 22.7 5.4 63 116-185 52-115 (297)
334 TIGR00594 polc DNA-directed DN 25.6 4E+02 0.0086 25.5 7.8 85 93-180 345-432 (1022)
335 cd04246 AAK_AK-DapG-like AAK_A 25.6 1.2E+02 0.0025 23.1 3.9 23 91-113 18-40 (239)
336 PF05088 Bac_GDH: Bacterial NA 25.2 1.4E+02 0.0031 29.7 5.0 69 111-186 839-913 (1528)
337 PF06616 BsuBI_PstI_RE: BsuBI/ 25.1 67 0.0015 25.8 2.5 23 162-184 169-192 (306)
338 PF08774 VRR_NUC: VRR-NUC doma 25.0 1.4E+02 0.003 19.1 3.7 27 87-113 73-99 (100)
339 PRK15482 transcriptional regul 25.0 1.1E+02 0.0023 24.0 3.7 33 88-120 193-225 (285)
340 PRK05673 dnaE DNA polymerase I 24.7 5.1E+02 0.011 25.2 8.4 84 93-179 341-427 (1135)
341 TIGR02886 spore_II_AA anti-sig 24.6 2E+02 0.0043 18.4 4.8 36 94-133 61-96 (106)
342 PRK13936 phosphoheptose isomer 24.6 1.1E+02 0.0025 22.5 3.6 32 89-120 123-154 (197)
343 KOG1123 RNA polymerase II tran 24.6 2.2E+02 0.0047 25.0 5.4 70 96-189 535-608 (776)
344 cd07043 STAS_anti-anti-sigma_f 24.5 1.8E+02 0.0039 17.9 5.0 35 92-128 58-92 (99)
345 TIGR01942 pcnB poly(A) polymer 24.3 83 0.0018 26.4 3.0 30 88-117 13-42 (410)
346 cd01453 vWA_transcription_fact 24.3 1.8E+02 0.0039 21.1 4.6 33 93-125 125-158 (183)
347 PF08541 ACP_syn_III_C: 3-Oxoa 24.1 1.2E+02 0.0026 18.8 3.2 67 103-182 9-78 (90)
348 cd05398 NT_ClassII-CCAase Nucl 24.1 1.3E+02 0.0028 20.9 3.5 27 91-117 2-29 (139)
349 PF13380 CoA_binding_2: CoA bi 23.9 1.8E+02 0.0038 19.4 4.1 40 89-128 64-104 (116)
350 PF13686 DrsE_2: DsrE/DsrF/Drs 23.8 78 0.0017 22.4 2.4 47 78-135 81-127 (148)
351 PRK11337 DNA-binding transcrip 23.4 1.2E+02 0.0027 23.6 3.8 32 89-120 199-230 (292)
352 PRK05672 dnaE2 error-prone DNA 23.4 3.9E+02 0.0085 25.6 7.4 84 93-180 335-421 (1046)
353 TIGR00190 thiC thiamine biosyn 23.2 2.6E+02 0.0056 23.5 5.5 21 161-183 205-225 (423)
354 PRK02947 hypothetical protein; 23.1 1.2E+02 0.0026 23.4 3.5 26 89-114 118-143 (246)
355 TIGR00761 argB acetylglutamate 22.9 2.3E+02 0.0049 21.3 5.0 37 91-128 16-52 (231)
356 PRK10886 DnaA initiator-associ 22.8 1.1E+02 0.0024 22.7 3.2 31 90-120 122-152 (196)
357 smart00481 POLIIIAc DNA polyme 22.7 1.3E+02 0.0028 17.5 3.0 23 92-114 16-38 (67)
358 TIGR00288 conserved hypothetic 22.6 3E+02 0.0065 19.8 5.2 17 96-112 71-87 (160)
359 PRK15381 pathogenicity island 22.5 54 0.0012 27.5 1.6 14 173-186 142-155 (408)
360 PRK13352 thiamine biosynthesis 22.5 2.7E+02 0.0058 23.5 5.5 21 161-183 208-228 (431)
361 PRK06826 dnaE DNA polymerase I 22.5 5E+02 0.011 25.3 7.9 84 93-179 341-427 (1151)
362 PRK07374 dnaE DNA polymerase I 22.5 4.5E+02 0.0097 25.6 7.6 85 93-180 352-439 (1170)
363 cd03334 Fab1_TCP TCP-1 like do 22.4 2E+02 0.0043 22.3 4.7 38 91-128 117-154 (261)
364 PRK11543 gutQ D-arabinose 5-ph 22.3 1.3E+02 0.0028 23.9 3.7 34 89-122 101-134 (321)
365 PRK02261 methylaspartate mutas 22.2 2.8E+02 0.006 19.2 5.5 46 88-135 66-119 (137)
366 PRK00994 F420-dependent methyl 22.0 1.8E+02 0.0039 22.6 4.1 39 90-128 73-111 (277)
367 COG0041 PurE Phosphoribosylcar 21.8 3.1E+02 0.0068 19.7 5.8 35 88-122 41-75 (162)
368 PRK11382 frlB fructoselysine-6 21.7 1.4E+02 0.003 24.2 3.8 34 90-123 105-138 (340)
369 PRK13601 putative L7Ae-like ri 21.6 2.1E+02 0.0047 17.9 3.9 42 87-128 7-52 (82)
370 cd04336 YeaK YeaK is an unchar 21.4 2.9E+02 0.0063 19.1 5.9 48 95-142 3-50 (153)
371 COG0528 PyrH Uridylate kinase 21.3 2.1E+02 0.0045 22.1 4.3 37 92-128 32-68 (238)
372 KOG0781 Signal recognition par 21.3 1.2E+02 0.0025 26.3 3.3 26 92-117 454-480 (587)
373 PRK08392 hypothetical protein; 21.3 1.6E+02 0.0036 21.9 3.9 17 95-111 165-181 (215)
374 KOG2413 Xaa-Pro aminopeptidase 21.3 35 0.00075 29.9 0.2 31 4-34 381-413 (606)
375 PRK06920 dnaE DNA polymerase I 21.3 4.8E+02 0.01 25.3 7.5 84 93-179 326-412 (1107)
376 cd08612 GDPD_GDE4 Glycerophosp 21.0 2.8E+02 0.006 22.0 5.3 39 93-134 250-288 (300)
377 COG0587 DnaE DNA polymerase II 20.9 4.6E+02 0.01 25.5 7.2 84 93-180 343-433 (1139)
378 PF01993 MTD: methylene-5,6,7, 20.9 1.9E+02 0.004 22.6 4.0 40 89-128 71-110 (276)
379 PF00072 Response_reg: Respons 20.9 2.3E+02 0.0049 17.7 4.3 44 89-134 54-99 (112)
380 cd08555 PI-PLCc_GDPD_SF Cataly 20.8 2.9E+02 0.0062 19.8 5.0 35 93-128 138-173 (179)
381 cd01578 AcnA_Mitochon_Swivel M 20.8 3.2E+02 0.007 19.4 5.3 43 91-135 55-103 (149)
382 cd06595 GH31_xylosidase_XylS-l 20.7 1.1E+02 0.0024 24.2 2.9 24 88-111 71-94 (292)
383 PRK09532 DNA polymerase III su 20.7 4.3E+02 0.0093 24.8 7.0 85 93-180 350-437 (874)
384 KOG2594 Uncharacterized conser 20.5 1.2E+02 0.0026 25.0 3.0 29 159-188 183-211 (396)
385 cd05007 SIS_Etherase N-acetylm 20.5 1.6E+02 0.0035 22.8 3.8 32 89-120 130-161 (257)
386 COG1225 Bcp Peroxiredoxin [Pos 20.4 3.4E+02 0.0073 19.5 5.1 45 101-149 83-136 (157)
387 PF15649 Tox-REase-7: Restrict 20.4 1.7E+02 0.0038 18.7 3.2 26 88-113 54-79 (87)
388 PTZ00325 malate dehydrogenase; 20.2 2.7E+02 0.0058 22.5 5.1 46 91-136 103-154 (321)
389 cd06259 YdcF-like YdcF-like. Y 20.2 3E+02 0.0065 18.8 7.6 76 91-182 21-104 (150)
390 COG1899 DYS1 Deoxyhypusine syn 20.1 2.9E+02 0.0062 22.4 5.0 41 87-128 64-104 (318)
391 PF13034 DUF3895: Protein of u 20.0 1.7E+02 0.0037 18.3 3.0 29 87-115 44-72 (78)
No 1
>KOG1615 consensus Phosphoserine phosphatase [Amino acid transport and metabolism]
Probab=99.97 E-value=1.5e-30 Score=185.95 Aligned_cols=176 Identities=49% Similarity=0.814 Sum_probs=166.0
Q ss_pred HHHHHHhhcCCcEEecCCCcccchhHh-hHHHHHHHH------HHHHHHHhCCCccHHHHHHHHHhhcCCCHHHHHHHHH
Q 029504 11 VELERLLRNGLPGCLASLFIENNSCLI-FLDGLTEFI------FVFFARAMGGSVPFEEALAARLSLFKPSLSQVQDFLE 83 (192)
Q Consensus 11 ~~~~~~~~~~k~iifD~~~~DGTL~~~-~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (192)
+...+.+...+++||| +|-|++.+ .++.++.++ ..++.+.++|.++|.+.++.+..++.+...+..+++.
T Consensus 7 ~e~~~~~~~~~aVcFD---vDSTvi~eEgIdelA~~~G~~~~Va~~T~rAMng~~~F~eaL~~Rl~llqp~~~qv~~~v~ 83 (227)
T KOG1615|consen 7 SELAKLWRSADAVCFD---VDSTVIQEEGIDELAAYCGVGEAVAEVTRRAMNGEADFQEALAARLSLLQPLQVQVEQFVI 83 (227)
T ss_pred HHHHHHHHhcCeEEEe---cCcchhHHhhHHHHHHHhCchHHHHHHHHHHhCCCCcHHHHHHHHHHHhcccHHHHHHHHh
Confidence 4677888899999999 99999998 888888877 7889999999999999999999999999999999999
Q ss_pred hCCCCCChhHHHHHHHHHHCCCcEEEEcCCcHHhHHHHHHHcCCCCCcEEecceeEecCCeeeeccCCCCCcCCCCHHHH
Q 029504 84 KRPPRLSPGIDELVKKLKANNKNVYLISGGFRHMINPIASVLGIPPENIFANQLLFKSSGEFLGFDANEPTSRSGGKAAA 163 (192)
Q Consensus 84 ~~~~~~~~~~~e~l~~l~~~g~~~~IvS~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~K~~~ 163 (192)
+.++.+.||++|++..|+++|..++++|+++...++.+.+.+||+.+++++|.+.++.+|++.+.+...|+.++.+|++.
T Consensus 84 ~~k~~lT~Gi~eLv~~L~~~~~~v~liSGGF~~~i~~Va~~Lgi~~~n~yAN~l~fd~~Gk~~gfd~~~ptsdsggKa~~ 163 (227)
T KOG1615|consen 84 KQKPTLTPGIRELVSRLHARGTQVYLISGGFRQLIEPVAEQLGIPKSNIYANELLFDKDGKYLGFDTNEPTSDSGGKAEV 163 (227)
T ss_pred cCCCccCCCHHHHHHHHHHcCCeEEEEcCChHHHHHHHHHHhCCcHhhhhhheeeeccCCcccccccCCccccCCccHHH
Confidence 98889999999999999999999999999999999999999999977799999999999999999999999999999999
Q ss_pred HHHHHHHcCCceEEEEeCCccchhhh
Q 029504 164 VQQIRKAHAYKVLAMIGDGATDLEVS 189 (192)
Q Consensus 164 l~~~~~~~g~~~~~~iGDs~~Di~~a 189 (192)
++.+++.++.+.++|||||.||++|.
T Consensus 164 i~~lrk~~~~~~~~mvGDGatDlea~ 189 (227)
T KOG1615|consen 164 IALLRKNYNYKTIVMVGDGATDLEAM 189 (227)
T ss_pred HHHHHhCCChheeEEecCCccccccC
Confidence 99999966669999999999999985
No 2
>PLN02954 phosphoserine phosphatase
Probab=99.95 E-value=1.6e-26 Score=175.54 Aligned_cols=180 Identities=64% Similarity=1.019 Sum_probs=148.2
Q ss_pred chHHHHHHhhcCCcEEecCCCcccchhHh-hHHHHHHHH------HHHHHHHhCCCccHHHHHHHHHhhcCCCHHHHHHH
Q 029504 9 NFVELERLLRNGLPGCLASLFIENNSCLI-FLDGLTEFI------FVFFARAMGGSVPFEEALAARLSLFKPSLSQVQDF 81 (192)
Q Consensus 9 ~~~~~~~~~~~~k~iifD~~~~DGTL~~~-~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (192)
|+....+.+++.|+|+|| |||||+++ ++..+.+.. ..+...+.++.+++.+.+..++..+....+.+.++
T Consensus 1 ~~~~~~~~~~~~k~viFD---fDGTL~~~~~~~~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (224)
T PLN02954 1 PSKDVLELWRSADAVCFD---VDSTVCVDEGIDELAEFCGAGEAVAEWTAKAMGGSVPFEEALAARLSLFKPSLSQVEEF 77 (224)
T ss_pred ChHHHHHHHccCCEEEEe---CCCcccchHHHHHHHHHcCChHHHHHHHHHHHCCCCCHHHHHHHHHHHcCCCHHHHHHH
Confidence 455678889999999999 99999998 766666444 56667788899999998888887776666667777
Q ss_pred HHhCCCCCChhHHHHHHHHHHCCCcEEEEcCCcHHhHHHHHHHcCCCCCcEEecceeEecCCeeeeccCCCCCcCCCCHH
Q 029504 82 LEKRPPRLSPGIDELVKKLKANNKNVYLISGGFRHMINPIASVLGIPPENIFANQLLFKSSGEFLGFDANEPTSRSGGKA 161 (192)
Q Consensus 82 ~~~~~~~~~~~~~e~l~~l~~~g~~~~IvS~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~K~ 161 (192)
++.....++||+.+++++++++|++++|+|++....++.+++.+|++...+|++.+.++.+|.+.+.....+.....+|+
T Consensus 78 ~~~~~~~l~pg~~e~l~~l~~~g~~~~IvS~~~~~~i~~~l~~~gi~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~K~ 157 (224)
T PLN02954 78 LEKRPPRLSPGIPELVKKLRARGTDVYLVSGGFRQMIAPVAAILGIPPENIFANQILFGDSGEYAGFDENEPTSRSGGKA 157 (224)
T ss_pred HHHccCCCCccHHHHHHHHHHCCCEEEEECCCcHHHHHHHHHHhCCChhhEEEeEEEEcCCCcEECccCCCcccCCccHH
Confidence 77655579999999999999999999999999999999999999997546888888887777777755433333345799
Q ss_pred HHHHHHHHHcCCceEEEEeCCccchhhhcc
Q 029504 162 AAVQQIRKAHAYKVLAMIGDGATDLEVSIF 191 (192)
Q Consensus 162 ~~l~~~~~~~g~~~~~~iGDs~~Di~~a~~ 191 (192)
..+..+++++|.++|+|||||.+|++|++.
T Consensus 158 ~~i~~~~~~~~~~~~i~iGDs~~Di~aa~~ 187 (224)
T PLN02954 158 EAVQHIKKKHGYKTMVMIGDGATDLEARKP 187 (224)
T ss_pred HHHHHHHHHcCCCceEEEeCCHHHHHhhhc
Confidence 999999998888899999999999999764
No 3
>COG0560 SerB Phosphoserine phosphatase [Amino acid transport and metabolism]
Probab=99.94 E-value=1.6e-25 Score=168.05 Aligned_cols=166 Identities=31% Similarity=0.473 Sum_probs=144.7
Q ss_pred hcCCcEEecCCCcccchhHh-hHHHHHHHH------HHHHHHHhCCCccHHHHHHHHHhhcCC-CHHHHHHHHHhCCCCC
Q 029504 18 RNGLPGCLASLFIENNSCLI-FLDGLTEFI------FVFFARAMGGSVPFEEALAARLSLFKP-SLSQVQDFLEKRPPRL 89 (192)
Q Consensus 18 ~~~k~iifD~~~~DGTL~~~-~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 89 (192)
+..++++|| |||||++. .++.+...+ ..+..+.+.+.+.+.+.++.+...+.+ ..+.+.++.++. ..+
T Consensus 3 ~~~~L~vFD---~D~TLi~~~~~~~~~~~~g~~~~v~~~t~~~~~~~~~~~~~~~~~v~~l~g~~~~~v~~~~~~~-~~l 78 (212)
T COG0560 3 RMKKLAVFD---LDGTLINAELIDELARGAGVGEEVLAITERAMRGELDFEESLRLRVALLKGLPVEVLEEVREEF-LRL 78 (212)
T ss_pred CccceEEEe---cccchhhHHHHHHHHHHhCCHHHHHHHHHHHhcccccHHHHHHHHHHHhCCCCHHHHHHHHHhc-CcC
Confidence 467899999 99999996 777777666 677888899999999999999999998 566677777774 469
Q ss_pred ChhHHHHHHHHHHCCCcEEEEcCCcHHhHHHHHHHcCCCCCcEEecceeEecCCeeeeccCCCCCcCCCCHHHHHHHHHH
Q 029504 90 SPGIDELVKKLKANNKNVYLISGGFRHMINPIASVLGIPPENIFANQLLFKSSGEFLGFDANEPTSRSGGKAAAVQQIRK 169 (192)
Q Consensus 90 ~~~~~e~l~~l~~~g~~~~IvS~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~K~~~l~~~~~ 169 (192)
+||+.+++++|+++|++++|+|+++..+++.+.+.+|++ ..+++.+.+++ |.++|...+ +.....+|...+.++++
T Consensus 79 ~~ga~elv~~lk~~G~~v~iiSgg~~~lv~~ia~~lg~d--~~~an~l~~~d-G~ltG~v~g-~~~~~~~K~~~l~~~~~ 154 (212)
T COG0560 79 TPGAEELVAALKAAGAKVVIISGGFTFLVEPIAERLGID--YVVANELEIDD-GKLTGRVVG-PICDGEGKAKALRELAA 154 (212)
T ss_pred CccHHHHHHHHHHCCCEEEEEcCChHHHHHHHHHHhCCc--hheeeEEEEeC-CEEeceeee-eecCcchHHHHHHHHHH
Confidence 999999999999999999999999999999999999999 89999999986 777775544 44445689999999999
Q ss_pred HcCC--ceEEEEeCCccchhhhcc
Q 029504 170 AHAY--KVLAMIGDGATDLEVSIF 191 (192)
Q Consensus 170 ~~g~--~~~~~iGDs~~Di~~a~~ 191 (192)
++|+ ++++++|||.||++|.+.
T Consensus 155 ~~g~~~~~~~a~gDs~nDlpml~~ 178 (212)
T COG0560 155 ELGIPLEETVAYGDSANDLPMLEA 178 (212)
T ss_pred HcCCCHHHeEEEcCchhhHHHHHh
Confidence 9998 799999999999999875
No 4
>TIGR01488 HAD-SF-IB Haloacid Dehalogenase superfamily, subfamily IB, phosphoserine phosphatase-like. Subfamily IA includes the enzyme phosphoserine phosphatase (TIGR00338) as well as three hypothetical equivalogs. Many members of these hypothetical equivalogs have been annotated as PSPase-like or PSPase-family proteins. In particular, the hypothetical equivalog which appears to be most closely related to PSPase contains only Archaea (while TIGR00338 contains only eukaryotes and bacteria) of which some are annotated as PSPases. Although this is a reasonable conjecture, none of these sequences has sufficient evidence for this assignment. If such should be found, this model should be retired while the PSPase model should be broadened to include these sequences.
Probab=99.93 E-value=2.4e-24 Score=157.78 Aligned_cols=165 Identities=27% Similarity=0.454 Sum_probs=135.7
Q ss_pred cEEecCCCcccchhHh-h-HHHHHHHH------HHHHHHHhCCCccHHHHHHHHHhhcCCCH-HHHHH-HHHhCCCCCCh
Q 029504 22 PGCLASLFIENNSCLI-F-LDGLTEFI------FVFFARAMGGSVPFEEALAARLSLFKPSL-SQVQD-FLEKRPPRLSP 91 (192)
Q Consensus 22 ~iifD~~~~DGTL~~~-~-~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-~~~~~~~~~~~ 91 (192)
+++|| |||||+.. + +..+.... ..+...+..+.+.+.+.+......+.+.. +++.+ ++.+. ..++|
T Consensus 1 l~~fD---~DgTl~~~~s~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 76 (177)
T TIGR01488 1 LAIFD---FDGTLTRQDSLIDLLAKLLGTNDEVIELTRLAPSGRISFEDALGRRLALLHRSRSEEVAKEFLARQ-VALRP 76 (177)
T ss_pred CEEec---CccccccchhhHHHHHHHhCChHHHHHHHHHHHCCCCCHHHHHHHHHHHhCCCCHHHHHHHHHHhc-CCcCc
Confidence 48999 99999986 4 44433333 56778889999999999999988887754 45554 65554 45899
Q ss_pred hHHHHHHHHHHCCCcEEEEcCCcHHhHHHHHHHcCCCCCcEEecceeEecCCeeeeccCCCCCcCCCCHHHHHHHHHHHc
Q 029504 92 GIDELVKKLKANNKNVYLISGGFRHMINPIASVLGIPPENIFANQLLFKSSGEFLGFDANEPTSRSGGKAAAVQQIRKAH 171 (192)
Q Consensus 92 ~~~e~l~~l~~~g~~~~IvS~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~K~~~l~~~~~~~ 171 (192)
|+.++++.++++|++++|+|++...+++.+++.+|+. .++++.+.++++|.++++....+.+.+.+|...+.++++++
T Consensus 77 g~~~~l~~l~~~g~~~~ivS~~~~~~i~~~~~~~g~~--~~~~~~~~~~~~g~~~g~~~~~~~~~~~~K~~~l~~~~~~~ 154 (177)
T TIGR01488 77 GARELISWLKERGIDTVIVSGGFDFFVEPVAEKLGID--DVFANRLEFDDNGLLTGPIEGQVNPEGECKGKVLKELLEES 154 (177)
T ss_pred CHHHHHHHHHHCCCEEEEECCCcHHHHHHHHHHcCCc--hheeeeEEECCCCEEeCccCCcccCCcchHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999998 89999998877788877554434455568999999999987
Q ss_pred CC--ceEEEEeCCccchhhhccC
Q 029504 172 AY--KVLAMIGDGATDLEVSIFI 192 (192)
Q Consensus 172 g~--~~~~~iGDs~~Di~~a~~~ 192 (192)
++ ++++|||||.||++|++.+
T Consensus 155 ~~~~~~~~~iGDs~~D~~~~~~a 177 (177)
T TIGR01488 155 KITLKKIIAVGDSVNDLPMLKLA 177 (177)
T ss_pred CCCHHHEEEEeCCHHHHHHHhcC
Confidence 76 7899999999999999853
No 5
>PRK11133 serB phosphoserine phosphatase; Provisional
Probab=99.92 E-value=7.7e-24 Score=167.94 Aligned_cols=165 Identities=26% Similarity=0.336 Sum_probs=138.3
Q ss_pred hcCCcEEecCCCcccchhHh-hHHHHHHHH------HHHHHHHhCCCccHHHHHHHHHhhcCCCHHH-HHHHHHhCCCCC
Q 029504 18 RNGLPGCLASLFIENNSCLI-FLDGLTEFI------FVFFARAMGGSVPFEEALAARLSLFKPSLSQ-VQDFLEKRPPRL 89 (192)
Q Consensus 18 ~~~k~iifD~~~~DGTL~~~-~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 89 (192)
+++++++|| |||||+.. +++.+.+.+ ..+..+.+++.+++.+.++.++..+.+..+. +.+..+.. .+
T Consensus 108 ~~~~LvvfD---mDGTLI~~e~i~eia~~~g~~~~v~~it~~~m~Geldf~esl~~rv~~l~g~~~~il~~v~~~l--~l 182 (322)
T PRK11133 108 RTPGLLVMD---MDSTAIQIECIDEIAKLAGTGEEVAEVTERAMRGELDFEASLRQRVATLKGADANILQQVRENL--PL 182 (322)
T ss_pred cCCCEEEEE---CCCCCcchHHHHHHHHHhCCchHHHHHHHHHHcCCcCHHHHHHHHHHHhCCCCHHHHHHHHHhC--CC
Confidence 468999999 99999987 888888776 5677788999999999999888877775444 33333333 59
Q ss_pred ChhHHHHHHHHHHCCCcEEEEcCCcHHhHHHHHHHcCCCCCcEEecceeEecCCeeeeccCCCCCcCCCCHHHHHHHHHH
Q 029504 90 SPGIDELVKKLKANNKNVYLISGGFRHMINPIASVLGIPPENIFANQLLFKSSGEFLGFDANEPTSRSGGKAAAVQQIRK 169 (192)
Q Consensus 90 ~~~~~e~l~~l~~~g~~~~IvS~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~K~~~l~~~~~ 169 (192)
.||+.++++.|++.|++++|+|+++..+++.+++.+|++ .++++.+.+. +|.+++...+.. ....+|+..++++++
T Consensus 183 ~pGa~elL~~Lk~~G~~~aIvSgg~~~~~~~l~~~Lgld--~~~an~lei~-dg~ltg~v~g~i-v~~k~K~~~L~~la~ 258 (322)
T PRK11133 183 MPGLTELVLKLQALGWKVAIASGGFTYFADYLRDKLRLD--AAVANELEIM-DGKLTGNVLGDI-VDAQYKADTLTRLAQ 258 (322)
T ss_pred ChhHHHHHHHHHHcCCEEEEEECCcchhHHHHHHHcCCC--eEEEeEEEEE-CCEEEeEecCcc-CCcccHHHHHHHHHH
Confidence 999999999999999999999999999999999999998 8888888775 677777655433 233589999999999
Q ss_pred HcCC--ceEEEEeCCccchhhhcc
Q 029504 170 AHAY--KVLAMIGDGATDLEVSIF 191 (192)
Q Consensus 170 ~~g~--~~~~~iGDs~~Di~~a~~ 191 (192)
++|+ ++|++||||.||++|++.
T Consensus 259 ~lgi~~~qtIaVGDg~NDl~m~~~ 282 (322)
T PRK11133 259 EYEIPLAQTVAIGDGANDLPMIKA 282 (322)
T ss_pred HcCCChhhEEEEECCHHHHHHHHH
Confidence 9997 899999999999999975
No 6
>TIGR00338 serB phosphoserine phosphatase SerB. Phosphoserine phosphatase catalyzes the reaction 3-phospho-serine + H2O = L-serine + phosphate. It catalyzes the last of three steps in the biosynthesis of serine from D-3-phosphoglycerate. Note that this enzyme acts on free phosphoserine, not on phosphoserine residues of phosphoproteins.
Probab=99.91 E-value=5.5e-23 Score=155.57 Aligned_cols=170 Identities=26% Similarity=0.391 Sum_probs=133.5
Q ss_pred HHHHhhcCCcEEecCCCcccchhHh-hHHHHHHHH------HHHHHHHhCCCccHHHHHHHHHhhcCC-CHHHHHHHHHh
Q 029504 13 LERLLRNGLPGCLASLFIENNSCLI-FLDGLTEFI------FVFFARAMGGSVPFEEALAARLSLFKP-SLSQVQDFLEK 84 (192)
Q Consensus 13 ~~~~~~~~k~iifD~~~~DGTL~~~-~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 84 (192)
..++++++|+++|| |||||+++ ++..+.+.. ..+..++..+..++.+..+.++..+.+ ..+.+.++.+.
T Consensus 7 ~~~~~~~~k~iiFD---~DGTL~~~~~~~~l~~~~g~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (219)
T TIGR00338 7 LSPLLRSKKLVVFD---MDSTLINAETIDEIAKIAGVEEEVSEITERAMRGELDFKASLRERVALLKGLPVELLKEVREN 83 (219)
T ss_pred chhhhccCCEEEEe---CcccCCCchHHHHHHHHhCCHHHHHHHHHHHHcCCCCHHHHHHHHHHHhCCCCHHHHHHHHhc
Confidence 44567789999999 99999997 666666544 344566777888888888877776655 33444444444
Q ss_pred CCCCCChhHHHHHHHHHHCCCcEEEEcCCcHHhHHHHHHHcCCCCCcEEecceeEecCCeeeeccCCCCCcCCCCHHHHH
Q 029504 85 RPPRLSPGIDELVKKLKANNKNVYLISGGFRHMINPIASVLGIPPENIFANQLLFKSSGEFLGFDANEPTSRSGGKAAAV 164 (192)
Q Consensus 85 ~~~~~~~~~~e~l~~l~~~g~~~~IvS~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~K~~~l 164 (192)
. .++||+.++|+.|+++|++++|+|++....++.+++.+|+. .+|++.+.++ ++.+++...+.+.. +.+|+..+
T Consensus 84 ~--~~~~g~~~~l~~l~~~g~~~~IvS~~~~~~~~~~l~~~~i~--~~~~~~~~~~-~~~~~~~~~~~~~~-~~~k~~~~ 157 (219)
T TIGR00338 84 L--PLTEGAEELVKTLKEKGYKVAVISGGFDLFAEHVKDKLGLD--AAFANRLEVE-DGKLTGLVEGPIVD-ASYKGKTL 157 (219)
T ss_pred C--CcCCCHHHHHHHHHHCCCEEEEECCCcHHHHHHHHHHcCCC--ceEeeEEEEE-CCEEEEEecCcccC-CcccHHHH
Confidence 4 58999999999999999999999999999999999999998 7898887775 56666644333322 23589999
Q ss_pred HHHHHHcCC--ceEEEEeCCccchhhhcc
Q 029504 165 QQIRKAHAY--KVLAMIGDGATDLEVSIF 191 (192)
Q Consensus 165 ~~~~~~~g~--~~~~~iGDs~~Di~~a~~ 191 (192)
..+++++++ ++|++||||.+|+++++.
T Consensus 158 ~~~~~~~~~~~~~~i~iGDs~~Di~aa~~ 186 (219)
T TIGR00338 158 LILLRKEGISPENTVAVGDGANDLSMIKA 186 (219)
T ss_pred HHHHHHcCCCHHHEEEEECCHHHHHHHHh
Confidence 999999887 789999999999999874
No 7
>TIGR01491 HAD-SF-IB-PSPlk HAD-superfamily, subfamily-IB PSPase-like hydrolase, archaeal. This hypothetical equivalog is a member of the IB subfamily (TIGR01488) of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. The sequences modelled by this alignment are all from archaeal species. The phylogenetically closest group of sequences to these are phosphoserine phosphatases (TIGR00338). There are no known archaeal phosphoserine phosphatases, and no archaea fall within TIGR00338. It is likely, then, that This model represents the archaeal branch of the PSPase equivalog.
Probab=99.89 E-value=8.6e-22 Score=146.93 Aligned_cols=164 Identities=18% Similarity=0.203 Sum_probs=123.1
Q ss_pred cCCcEEecCCCcccchhHh--hHHHHHHHH------HHHHHHHhCCCccHHHHHHHHHhhcCC-----CHHHHHHHHHhC
Q 029504 19 NGLPGCLASLFIENNSCLI--FLDGLTEFI------FVFFARAMGGSVPFEEALAARLSLFKP-----SLSQVQDFLEKR 85 (192)
Q Consensus 19 ~~k~iifD~~~~DGTL~~~--~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~ 85 (192)
++|+|+|| |||||+++ .+..+...+ ......+..+.+++.+.+......+.+ ..+.+.+++.+.
T Consensus 3 ~~k~viFD---~DGTLid~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (201)
T TIGR01491 3 MIKLIIFD---LDGTLTDVMSSWEYLHRRLETCGLAKKNAELFFSGRISYEEWARLDASLWKRRSGRLRREEVEEIFKEI 79 (201)
T ss_pred cceEEEEe---CCCCCcCCccHHHHHHHHhCchHHHHHHHHHHHcCCCCHHHHHHHHHHHHhhcccCCCHHHHHHHHHhC
Confidence 57899999 99999995 455444433 222345677888888877655443322 334455555555
Q ss_pred CCCCChhHHHHHHHHHHCCCcEEEEcCCcHHhHHHHHHHcCCCCCcEEecceeEecCCeeeeccCCCCCcCCCCHHHHHH
Q 029504 86 PPRLSPGIDELVKKLKANNKNVYLISGGFRHMINPIASVLGIPPENIFANQLLFKSSGEFLGFDANEPTSRSGGKAAAVQ 165 (192)
Q Consensus 86 ~~~~~~~~~e~l~~l~~~g~~~~IvS~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~K~~~l~ 165 (192)
.++||+.++|++|+++|++++|+|++....++.+++.+|+. .+|++.+..++.|...+.. .....+.+|+..+.
T Consensus 80 --~~~~g~~e~l~~l~~~g~~~~IvS~~~~~~~~~~l~~~g~~--~~~~~~~~~~~~g~~~p~~--~~~~~~~~k~~~~~ 153 (201)
T TIGR01491 80 --SLRDYAEELVRWLKEKGLKTAIVSGGIMCLAKKVAEKLNPD--YVYSNELVFDEKGFIQPDG--IVRVTFDNKGEAVE 153 (201)
T ss_pred --CCCccHHHHHHHHHHCCCEEEEEeCCcHHHHHHHHHHhCCC--eEEEEEEEEcCCCeEecce--eeEEccccHHHHHH
Confidence 58999999999999999999999999999999999999987 8888887776556554321 11122346888999
Q ss_pred HHHHHcCC--ceEEEEeCCccchhhhcc
Q 029504 166 QIRKAHAY--KVLAMIGDGATDLEVSIF 191 (192)
Q Consensus 166 ~~~~~~g~--~~~~~iGDs~~Di~~a~~ 191 (192)
.+++++|+ ++|+|||||.+|++|++.
T Consensus 154 ~~~~~~~~~~~~~i~iGDs~~D~~~a~~ 181 (201)
T TIGR01491 154 RLKRELNPSLTETVAVGDSKNDLPMFEV 181 (201)
T ss_pred HHHHHhCCCHHHEEEEcCCHhHHHHHHh
Confidence 99998887 889999999999999875
No 8
>PRK09552 mtnX 2-hydroxy-3-keto-5-methylthiopentenyl-1-phosphate phosphatase; Reviewed
Probab=99.89 E-value=1.3e-21 Score=148.17 Aligned_cols=164 Identities=19% Similarity=0.299 Sum_probs=123.1
Q ss_pred cCCcEEecCCCcccchhHh-hHHHHHHHH-----HHHHHHHhCCCccHHHHHHHHHhhcCCC-HHHHHHHHHhCCCCCCh
Q 029504 19 NGLPGCLASLFIENNSCLI-FLDGLTEFI-----FVFFARAMGGSVPFEEALAARLSLFKPS-LSQVQDFLEKRPPRLSP 91 (192)
Q Consensus 19 ~~k~iifD~~~~DGTL~~~-~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 91 (192)
+.++++|| |||||+++ ....+.+.. ..+..+++.+.+++.+.++..+..+... .++..+++... ..++|
T Consensus 2 ~~~~vifD---fDgTi~~~d~~~~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~-~~l~p 77 (219)
T PRK09552 2 MSIQIFCD---FDGTITNNDNIIAIMKKFAPPEWEELKDDILSQELSIQEGVGQMFQLLPSNLKEEIIQFLLET-AEIRE 77 (219)
T ss_pred CCcEEEEc---CCCCCCcchhhHHHHHHhCHHHHHHHHHHHHhCCcCHHHHHHHHHHhCCCCchHHHHHHHHhC-CCcCc
Confidence 45799999 99999997 444433322 6677788899999999999999988764 35666666544 46999
Q ss_pred hHHHHHHHHHHCCCcEEEEcCCcHHhHHHHHHHcCCCCCcEEecceeEecCCeeeeccCCCCCc------CCCCHHHHHH
Q 029504 92 GIDELVKKLKANNKNVYLISGGFRHMINPIASVLGIPPENIFANQLLFKSSGEFLGFDANEPTS------RSGGKAAAVQ 165 (192)
Q Consensus 92 ~~~e~l~~l~~~g~~~~IvS~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~g~~~~~~~~~~~~------~~~~K~~~l~ 165 (192)
|+.++|++++++|++++|+|++...+++.+++.+ +....++++...++.+ .+. ...++|.+ .+.+|..++.
T Consensus 78 G~~e~l~~l~~~g~~~~IvS~~~~~~i~~il~~~-~~~~~i~~n~~~~~~~-~~~-~~kp~p~~~~~~~~~~~~K~~~l~ 154 (219)
T PRK09552 78 GFHEFVQFVKENNIPFYVVSGGMDFFVYPLLQGL-IPKEQIYCNGSDFSGE-YIT-ITWPHPCDEHCQNHCGCCKPSLIR 154 (219)
T ss_pred CHHHHHHHHHHcCCeEEEECCCcHHHHHHHHHHh-CCcCcEEEeEEEecCC-eeE-EeccCCccccccccCCCchHHHHH
Confidence 9999999999999999999999999999999988 7644577777666432 222 12222322 1236888777
Q ss_pred HHHHHcCCceEEEEeCCccchhhhcc
Q 029504 166 QIRKAHAYKVLAMIGDGATDLEVSIF 191 (192)
Q Consensus 166 ~~~~~~g~~~~~~iGDs~~Di~~a~~ 191 (192)
++.... .+|+|||||.+|+++|+.
T Consensus 155 ~~~~~~--~~~i~iGDs~~Di~aa~~ 178 (219)
T PRK09552 155 KLSDTN--DFHIVIGDSITDLEAAKQ 178 (219)
T ss_pred HhccCC--CCEEEEeCCHHHHHHHHH
Confidence 664332 589999999999999974
No 9
>TIGR02137 HSK-PSP phosphoserine phosphatase/homoserine phosphotransferase bifunctional protein. This enzyme is a member of the haloacid dehalogenase (HAD) superfamily, specifically part of subfamily IB by virtue of the presence of an alpha helical domain in between motifs I and II of the HAD domain . The closest homologs to this family are monofunctional phosphoserine phosphatases (TIGR00338).
Probab=99.88 E-value=3.2e-21 Score=144.08 Aligned_cols=156 Identities=18% Similarity=0.283 Sum_probs=124.5
Q ss_pred CcEEecCCCcccchhHhhHHHHHHHH--HHHHHHHhCCCccHHHHHHHHHhhcC--C-CHHHHHHHHHhCCCCCChhHHH
Q 029504 21 LPGCLASLFIENNSCLIFLDGLTEFI--FVFFARAMGGSVPFEEALAARLSLFK--P-SLSQVQDFLEKRPPRLSPGIDE 95 (192)
Q Consensus 21 k~iifD~~~~DGTL~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~--~-~~~~~~~~~~~~~~~~~~~~~e 95 (192)
.+++|| |||||++..|..+.... ... ....++...+.++++.+...+. + ..+.+.+.+... .++||+.+
T Consensus 2 ~la~FD---lD~TLi~~~w~~~~~~~g~~~~-~~~~~~~~~~~~~~~~r~~ll~~~g~~~~~i~~~~~~i--~l~pga~e 75 (203)
T TIGR02137 2 EIACLD---LEGVLVPEIWIAFAEKTGIDAL-KATTRDIPDYDVLMKQRLRILDEHGLKLGDIQEVIATL--KPLEGAVE 75 (203)
T ss_pred eEEEEe---CCcccHHHHHHHHHHHcCCcHH-HHHhcCCcCHHHHHHHHHHHHHHCCCCHHHHHHHHHhC--CCCccHHH
Confidence 579999 99999987666665554 111 1345677889999998887774 4 667777777765 58999999
Q ss_pred HHHHHHHCCCcEEEEcCCcHHhHHHHHHHcCCCCCcEEecceeEecCCeeeeccCCCCCcCCCCHHHHHHHHHHHcCCce
Q 029504 96 LVKKLKANNKNVYLISGGFRHMINPIASVLGIPPENIFANQLLFKSSGEFLGFDANEPTSRSGGKAAAVQQIRKAHAYKV 175 (192)
Q Consensus 96 ~l~~l~~~g~~~~IvS~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~K~~~l~~~~~~~g~~~ 175 (192)
+|+++++++ +++|+|++...+++.+++.+|++ .+|++.+.+++.|.++|... ..+.+|...+..+. +.+. +
T Consensus 76 ll~~lk~~~-~~~IVS~~~~~~~~~il~~lgi~--~~~an~l~~~~~g~~tG~~~----~~~~~K~~~l~~l~-~~~~-~ 146 (203)
T TIGR02137 76 FVDWLRERF-QVVILSDTFYEFSQPLMRQLGFP--TLLCHKLEIDDSDRVVGYQL----RQKDPKRQSVIAFK-SLYY-R 146 (203)
T ss_pred HHHHHHhCC-eEEEEeCChHHHHHHHHHHcCCc--hhhceeeEEecCCeeECeee----cCcchHHHHHHHHH-hhCC-C
Confidence 999999985 99999999999999999999998 89999998875477777533 12347999999885 4454 8
Q ss_pred EEEEeCCccchhhhcc
Q 029504 176 LAMIGDGATDLEVSIF 191 (192)
Q Consensus 176 ~~~iGDs~~Di~~a~~ 191 (192)
|++||||.||++|++.
T Consensus 147 ~v~vGDs~nDl~ml~~ 162 (203)
T TIGR02137 147 VIAAGDSYNDTTMLSE 162 (203)
T ss_pred EEEEeCCHHHHHHHHh
Confidence 9999999999999875
No 10
>TIGR03333 salvage_mtnX 2-hydroxy-3-keto-5-methylthiopentenyl-1-phosphate phosphatase. Members of this family are the methionine salvage enzyme MnxX, a member of the HAD-superfamily hydrolases, subfamily IB (see TIGR01488). Members are found in Bacillus subtilis and related species, paired with MtnW (TIGR03332). In most species that recycle methionine from methylthioadenosine, the single protein MtnC replaces the MtnW/MtnX pair. In B. subtilis, mtnX was first known as ykrX.
Probab=99.86 E-value=6e-20 Score=138.66 Aligned_cols=160 Identities=15% Similarity=0.233 Sum_probs=122.2
Q ss_pred EEecCCCcccchhHh-hHHHHHHHH-----HHHHHHHhCCCccHHHHHHHHHhhcCCC-HHHHHHHHHhCCCCCChhHHH
Q 029504 23 GCLASLFIENNSCLI-FLDGLTEFI-----FVFFARAMGGSVPFEEALAARLSLFKPS-LSQVQDFLEKRPPRLSPGIDE 95 (192)
Q Consensus 23 iifD~~~~DGTL~~~-~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~e 95 (192)
++|| |||||+.. +...+.+.. ..+..++..+.+++.+.++.++..++.. .+++.+++.+. ..++||+.+
T Consensus 2 ~~fD---FDgTit~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~-~~l~pg~~e 77 (214)
T TIGR03333 2 IICD---FDGTITNNDNIISIMKQFAPPEWEALKDGVLSKTLSIQEGVGRMFGLLPSSLKEEITSFVLET-AEIREGFRE 77 (214)
T ss_pred EEec---cCCCCCcchhHHHHHHHhCcHHHHHHHHHHHcCCccHHHHHHHHHhhCCCchHHHHHHHHHhc-CcccccHHH
Confidence 7999 99999987 554444332 5667788889999999999999888765 35677766553 579999999
Q ss_pred HHHHHHHCCCcEEEEcCCcHHhHHHHHHHcCCCCCcEEecceeEecCCeeeeccCCCCCc------CCCCHHHHHHHHHH
Q 029504 96 LVKKLKANNKNVYLISGGFRHMINPIASVLGIPPENIFANQLLFKSSGEFLGFDANEPTS------RSGGKAAAVQQIRK 169 (192)
Q Consensus 96 ~l~~l~~~g~~~~IvS~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~g~~~~~~~~~~~~------~~~~K~~~l~~~~~ 169 (192)
++++++++|++++|+|++...+++.+++.++.. ..++++.+.++. +.+... .++|.. -+.+|..+++++..
T Consensus 78 ~l~~l~~~g~~~~IvS~~~~~~i~~il~~~~~~-~~i~~n~~~~~~-~~~~~~-~p~~~~~~~~~~cg~~K~~~l~~~~~ 154 (214)
T TIGR03333 78 FVAFINEHGIPFYVISGGMDFFVYPLLEGIVEK-DRIYCNEADFSN-EYIHID-WPHPCDGTCQNQCGCCKPSLIRKLSE 154 (214)
T ss_pred HHHHHHHCCCeEEEECCCcHHHHHHHHHhhCCc-ccEEeceeEeeC-CeeEEe-CCCCCccccccCCCCCHHHHHHHHhh
Confidence 999999999999999999999999999987543 367788877753 333331 222211 13479999988865
Q ss_pred HcCCceEEEEeCCccchhhhcc
Q 029504 170 AHAYKVLAMIGDGATDLEVSIF 191 (192)
Q Consensus 170 ~~g~~~~~~iGDs~~Di~~a~~ 191 (192)
.. ++++|||||.+|++||+.
T Consensus 155 ~~--~~~i~iGDg~~D~~~a~~ 174 (214)
T TIGR03333 155 PN--DYHIVIGDSVTDVEAAKQ 174 (214)
T ss_pred cC--CcEEEEeCCHHHHHHHHh
Confidence 33 589999999999999874
No 11
>TIGR01490 HAD-SF-IB-hyp1 HAD-superfamily subfamily IB hydrolase, TIGR01490. A subset of these sequences, including the Caulobacter crescentus CicA protein, cluster together and may represent a separate equivalog.
Probab=99.85 E-value=7.2e-20 Score=136.84 Aligned_cols=102 Identities=24% Similarity=0.370 Sum_probs=88.5
Q ss_pred CCCChhHHHHHHHHHHCCCcEEEEcCCcHHhHHHHHHHcCCCCCcEEecceeEecCCeeeeccCCCCCcCCCCHHHHHHH
Q 029504 87 PRLSPGIDELVKKLKANNKNVYLISGGFRHMINPIASVLGIPPENIFANQLLFKSSGEFLGFDANEPTSRSGGKAAAVQQ 166 (192)
Q Consensus 87 ~~~~~~~~e~l~~l~~~g~~~~IvS~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~K~~~l~~ 166 (192)
..++|++.++++.++++|++++|+|+++...++.+++.+|++ .++++.+.++.+|.+++...+ +...+..|...+++
T Consensus 86 ~~~~~~~~~~l~~l~~~g~~v~ivS~s~~~~v~~~~~~lg~~--~~~~~~l~~~~~g~~~g~~~~-~~~~g~~K~~~l~~ 162 (202)
T TIGR01490 86 SILYPEARDLIRWHKAEGHTIVLVSASLTILVKPLARILGID--NAIGTRLEESEDGIYTGNIDG-NNCKGEGKVHALAE 162 (202)
T ss_pred HhccHHHHHHHHHHHHCCCEEEEEeCCcHHHHHHHHHHcCCc--ceEecceEEcCCCEEeCCccC-CCCCChHHHHHHHH
Confidence 358999999999999999999999999999999999999998 899998877667888875432 33445579999999
Q ss_pred HHHHcCC--ceEEEEeCCccchhhhcc
Q 029504 167 IRKAHAY--KVLAMIGDGATDLEVSIF 191 (192)
Q Consensus 167 ~~~~~g~--~~~~~iGDs~~Di~~a~~ 191 (192)
+++++++ ++|+++|||.+|++|++.
T Consensus 163 ~~~~~~~~~~~~~~~gDs~~D~~~~~~ 189 (202)
T TIGR01490 163 LLAEEQIDLKDSYAYGDSISDLPLLSL 189 (202)
T ss_pred HHHHcCCCHHHcEeeeCCcccHHHHHh
Confidence 9998887 689999999999999875
No 12
>TIGR01489 DKMTPPase-SF 2,3-diketo-5-methylthio-1-phosphopentane phosphatase. Note that SP|P53981 from S. cerevisiae, a member of this family, is annotated as a "probable membrane protein" due to a predicted transmembrane helix. The region in question contains the second of the three conserved HAD superfamily catalytic motifs and thus, considering the fold of the HAD catalytic domain, is unlikely to be a transmembrane region in fact.
Probab=99.84 E-value=3e-19 Score=131.77 Aligned_cols=164 Identities=18% Similarity=0.276 Sum_probs=115.8
Q ss_pred cEEecCCCcccchhHh-hHHHHHHHH-----HHHHHHHhCC--CccHHHHHHHHHhhcCCCHHHHHHHHHhCCCCCChhH
Q 029504 22 PGCLASLFIENNSCLI-FLDGLTEFI-----FVFFARAMGG--SVPFEEALAARLSLFKPSLSQVQDFLEKRPPRLSPGI 93 (192)
Q Consensus 22 ~iifD~~~~DGTL~~~-~~~~~~~~~-----~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (192)
+++|| |||||++. ....+.+.. ..+...+..+ ...+.+.+...........+.+.+.+... .+.||+
T Consensus 3 ~iiFD---~dgTL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~l~~g~ 77 (188)
T TIGR01489 3 VVVSD---FDGTITLNDSDDWITDKFGPPEANRLLDGVLSKTLSIKFMDRRMKGLLPSGLKEDEILEVLKSA--PIDPGF 77 (188)
T ss_pred EEEEe---CCCcccCCCchHHHHHhcCcchhhHHHHHHhhcCCchHHHHHHHHHHhhcCCCHHHHHHHHHhC--CCCccH
Confidence 68999 99999996 544444332 3344444433 33444444443333333455566666654 589999
Q ss_pred HHHHHHHHHCCCcEEEEcCCcHHhHHHHHHHcCCCC--CcEEecceeEecCCeeeeccCCC----CCcCCCCHHHHHHHH
Q 029504 94 DELVKKLKANNKNVYLISGGFRHMINPIASVLGIPP--ENIFANQLLFKSSGEFLGFDANE----PTSRSGGKAAAVQQI 167 (192)
Q Consensus 94 ~e~l~~l~~~g~~~~IvS~~~~~~~~~~l~~~g~~~--~~~~~~~~~~~~~g~~~~~~~~~----~~~~~~~K~~~l~~~ 167 (192)
.++++.|+++|++++|+|++....++.+++.+|+.. +.++++...++++|.+.+..... +.+.+..|...++++
T Consensus 78 ~~ll~~l~~~g~~~~i~S~~~~~~~~~~l~~~~l~~~f~~i~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~~K~~~~~~~ 157 (188)
T TIGR01489 78 KEFIAFIKEHGIDFIVISDGNDFFIDPVLEGIGEKDVFIEIYSNPASFDNDGRHIVWPHHCHGCCSCPCGCCKGKVIHKL 157 (188)
T ss_pred HHHHHHHHHcCCcEEEEeCCcHHHHHHHHHHcCChhheeEEeccCceECCCCcEEEecCCCCccCcCCCCCCHHHHHHHH
Confidence 999999999999999999999999999999999862 23566666676677766644431 222334799999999
Q ss_pred HHHcCCceEEEEeCCccchhhhcc
Q 029504 168 RKAHAYKVLAMIGDGATDLEVSIF 191 (192)
Q Consensus 168 ~~~~g~~~~~~iGDs~~Di~~a~~ 191 (192)
++++ .+++++||||.+|+++|+.
T Consensus 158 ~~~~-~~~~i~iGD~~~D~~aa~~ 180 (188)
T TIGR01489 158 SEPK-YQHIIYIGDGVTDVCPAKL 180 (188)
T ss_pred Hhhc-CceEEEECCCcchhchHhc
Confidence 8874 4699999999999999974
No 13
>PRK13582 thrH phosphoserine phosphatase; Provisional
Probab=99.83 E-value=3.6e-19 Score=133.33 Aligned_cols=157 Identities=20% Similarity=0.294 Sum_probs=118.4
Q ss_pred CCcEEecCCCcccchhHhhHHHHHHHH--HHHHHHHhCCCccHHHHHHHHHhhcC--C-CHHHHHHHHHhCCCCCChhHH
Q 029504 20 GLPGCLASLFIENNSCLIFLDGLTEFI--FVFFARAMGGSVPFEEALAARLSLFK--P-SLSQVQDFLEKRPPRLSPGID 94 (192)
Q Consensus 20 ~k~iifD~~~~DGTL~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~--~-~~~~~~~~~~~~~~~~~~~~~ 94 (192)
+++|+|| |||||+...+..+.+.. ... ..+..+...+...+..+...+. + ..+++...++.. .++||+.
T Consensus 1 ~~~v~FD---~DGTL~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~~~~~--~~~pg~~ 74 (205)
T PRK13582 1 MEIVCLD---LEGVLVPEIWIAFAEKTGIPEL-RATTRDIPDYDVLMKQRLDILDEHGLGLADIQEVIATL--DPLPGAV 74 (205)
T ss_pred CeEEEEe---CCCCChhhHHHHHHHHcCChHH-HHHhcCCCCHHHHHHHHHHHHHHcCCCHHHHHHHHHhC--CCCCCHH
Confidence 4789999 99999976555544443 222 2234566778888887776655 2 455566666665 4899999
Q ss_pred HHHHHHHHCCCcEEEEcCCcHHhHHHHHHHcCCCCCcEEecceeEecCCeeeeccCCCCCcCCCCHHHHHHHHHHHcCCc
Q 029504 95 ELVKKLKANNKNVYLISGGFRHMINPIASVLGIPPENIFANQLLFKSSGEFLGFDANEPTSRSGGKAAAVQQIRKAHAYK 174 (192)
Q Consensus 95 e~l~~l~~~g~~~~IvS~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~K~~~l~~~~~~~g~~ 174 (192)
++|+.++++ ++++|+|++....++.+++.+|++ .+|++.+.++.++.+.+..... +..|...++.+... + +
T Consensus 75 e~L~~L~~~-~~~~IvS~~~~~~~~~~l~~~gl~--~~f~~~~~~~~~~~i~~~~~~~----p~~k~~~l~~~~~~-~-~ 145 (205)
T PRK13582 75 EFLDWLRER-FQVVILSDTFYEFAGPLMRQLGWP--TLFCHSLEVDEDGMITGYDLRQ----PDGKRQAVKALKSL-G-Y 145 (205)
T ss_pred HHHHHHHhc-CCEEEEeCCcHHHHHHHHHHcCCc--hhhcceEEECCCCeEECccccc----cchHHHHHHHHHHh-C-C
Confidence 999999999 999999999999999999999998 8888888777666666644222 34577777766543 2 5
Q ss_pred eEEEEeCCccchhhhcc
Q 029504 175 VLAMIGDGATDLEVSIF 191 (192)
Q Consensus 175 ~~~~iGDs~~Di~~a~~ 191 (192)
+|+|||||.+|++|++.
T Consensus 146 ~~v~iGDs~~D~~~~~a 162 (205)
T PRK13582 146 RVIAAGDSYNDTTMLGE 162 (205)
T ss_pred eEEEEeCCHHHHHHHHh
Confidence 99999999999999864
No 14
>PF06888 Put_Phosphatase: Putative Phosphatase; InterPro: IPR016965 This group represents phosphatases related to PHOSPHO1 and PHOSPHO2 []. It includes plant phosphatases with homology to the haloacid dehalogenase (HAD) superfamily [, ]. PHOSPHO1 is a phosphoethanolamine/phosphocholine phosphatase [], while PHOSPHO2 has high activity toward pyridoxal 5'-phosphate (PLP), and it is active at much lower level toward pyrophosphate, phosphoethanolamine (PEA)and phosphocholine (PCho) []. ; GO: 0016791 phosphatase activity
Probab=99.82 E-value=1.1e-18 Score=132.07 Aligned_cols=162 Identities=18% Similarity=0.239 Sum_probs=124.9
Q ss_pred cEEecCCCcccchhHh-hHHHHHHHH------HHHHHHHhCCCccHHHHHHHHHhhcC--C-CHHHHHHHHHhCCCCCCh
Q 029504 22 PGCLASLFIENNSCLI-FLDGLTEFI------FVFFARAMGGSVPFEEALAARLSLFK--P-SLSQVQDFLEKRPPRLSP 91 (192)
Q Consensus 22 ~iifD~~~~DGTL~~~-~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~--~-~~~~~~~~~~~~~~~~~~ 91 (192)
+++|| ||+||++. +-..+.+.+ ..+...+. ...|.++++..+..++ + +.+++.+.++..+ +.|
T Consensus 2 LvvfD---FD~TIvd~dsd~~v~~~l~~~~~~~~l~~~~~--~~~wt~~m~~vl~~L~~~gvt~~~I~~~l~~ip--~~p 74 (234)
T PF06888_consen 2 LVVFD---FDHTIVDQDSDDWVIELLPPEELPEELRESYP--KGGWTEYMDRVLQLLHEQGVTPEDIRDALRSIP--IDP 74 (234)
T ss_pred EEEEe---CCCCccCCccHHHHHHhcCCcccHHHHHHhcc--ccchHHHHHHHHHHHHHcCCCHHHHHHHHHcCC--CCc
Confidence 68999 99999997 666666655 22333322 2467888888887776 3 5778888888885 889
Q ss_pred hHHHHHHHH--HHCCCcEEEEcCCcHHhHHHHHHHcCCCC--CcEEecceeEecCCeeeeccCC---CCCc-CCCCHHHH
Q 029504 92 GIDELVKKL--KANNKNVYLISGGFRHMINPIASVLGIPP--ENIFANQLLFKSSGEFLGFDAN---EPTS-RSGGKAAA 163 (192)
Q Consensus 92 ~~~e~l~~l--~~~g~~~~IvS~~~~~~~~~~l~~~g~~~--~~~~~~~~~~~~~g~~~~~~~~---~~~~-~~~~K~~~ 163 (192)
|+.++++.+ ++.|+.++|+|.+...+++.++++.|+.. ..+++|...++.+|.+.=.+.. .+.. ..-+|+..
T Consensus 75 gm~~~l~~l~~~~~~~~~~IiSDaNs~fI~~iL~~~gl~~~f~~I~TNpa~~~~~G~l~v~pyh~h~C~~C~~NmCK~~i 154 (234)
T PF06888_consen 75 GMKELLRFLAKNQRGFDLIIISDANSFFIETILEHHGLRDCFSEIFTNPACFDADGRLRVRPYHSHGCSLCPPNMCKGKI 154 (234)
T ss_pred cHHHHHHHHHhcCCCceEEEEeCCcHhHHHHHHHhCCCccccceEEeCCceecCCceEEEeCccCCCCCcCCCccchHHH
Confidence 999999999 45799999999999999999999999974 3678888888878876422221 2222 22499999
Q ss_pred HHHHHHHc---CC--ceEEEEeCCccchhhhc
Q 029504 164 VQQIRKAH---AY--KVLAMIGDGATDLEVSI 190 (192)
Q Consensus 164 l~~~~~~~---g~--~~~~~iGDs~~Di~~a~ 190 (192)
++++.+.. |. ++++|||||.||++++.
T Consensus 155 l~~~~~~~~~~g~~~~rviYiGDG~nD~Cp~~ 186 (234)
T PF06888_consen 155 LERLLQEQAQRGVPYDRVIYIGDGRNDFCPAL 186 (234)
T ss_pred HHHHHHHHhhcCCCcceEEEECCCCCCcCccc
Confidence 99999873 53 89999999999999874
No 15
>COG4359 Uncharacterized conserved protein [Function unknown]
Probab=99.81 E-value=1.8e-18 Score=123.17 Aligned_cols=164 Identities=16% Similarity=0.256 Sum_probs=133.2
Q ss_pred CcEEecCCCcccchhHh-hHHHHHHHH-----HHHHHHHhCCCccHHHHHHHHHhhcCCCHHHHHHHHHhCCCCCChhHH
Q 029504 21 LPGCLASLFIENNSCLI-FLDGLTEFI-----FVFFARAMGGSVPFEEALAARLSLFKPSLSQVQDFLEKRPPRLSPGID 94 (192)
Q Consensus 21 k~iifD~~~~DGTL~~~-~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (192)
-+|+.| ||||+.-+ +...++... ..+...++.+.+++.+.+..++..++.+.+++.+++.+. ..+.||++
T Consensus 4 ~vi~sD---FDGTITl~Ds~~~itdtf~~~e~k~l~~~vls~tiS~rd~~g~mf~~i~~s~~Eile~llk~-i~Idp~fK 79 (220)
T COG4359 4 PVIFSD---FDGTITLNDSNDYITDTFGPGEWKALKDGVLSKTISFRDGFGRMFGSIHSSLEEILEFLLKD-IKIDPGFK 79 (220)
T ss_pred eEEEec---CCCceEecchhHHHHhccCchHHHHHHHHHhhCceeHHHHHHHHHHhcCCCHHHHHHHHHhh-cccCccHH
Confidence 467889 99999876 666666555 677888899999999999999999998889999998875 46999999
Q ss_pred HHHHHHHHCCCcEEEEcCCcHHhHHHHHHHcC----CCCCcEEecceeEecCCeeeeccCCCCCcCCCCHHHHHHHHHHH
Q 029504 95 ELVKKLKANNKNVYLISGGFRHMINPIASVLG----IPPENIFANQLLFKSSGEFLGFDANEPTSRSGGKAAAVQQIRKA 170 (192)
Q Consensus 95 e~l~~l~~~g~~~~IvS~~~~~~~~~~l~~~g----~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~K~~~l~~~~~~ 170 (192)
++++++++++++++|+|+|...++..+++..+ +...+++++...+..+|...-. .+...+-+.+|...+..+.+.
T Consensus 80 ef~e~ike~di~fiVvSsGm~~fI~~lfe~ivgke~i~~idi~sn~~~ih~dg~h~i~-~~~ds~fG~dK~~vI~~l~e~ 158 (220)
T COG4359 80 EFVEWIKEHDIPFIVVSSGMDPFIYPLFEGIVGKERIYCIDIVSNNDYIHIDGQHSIK-YTDDSQFGHDKSSVIHELSEP 158 (220)
T ss_pred HHHHHHHHcCCCEEEEeCCCchHHHHHHHhhccccceeeeEEeecCceEcCCCceeee-cCCccccCCCcchhHHHhhcC
Confidence 99999999999999999999999999999876 5555677777777666654321 112233346899999999876
Q ss_pred cCCceEEEEeCCccchhhhcc
Q 029504 171 HAYKVLAMIGDGATDLEVSIF 191 (192)
Q Consensus 171 ~g~~~~~~iGDs~~Di~~a~~ 191 (192)
+ +.++|+|||.+|+++|+.
T Consensus 159 ~--e~~fy~GDsvsDlsaakl 177 (220)
T COG4359 159 N--ESIFYCGDSVSDLSAAKL 177 (220)
T ss_pred C--ceEEEecCCcccccHhhh
Confidence 5 579999999999999874
No 16
>TIGR01545 YfhB_g-proteo haloacid dehalogenase superfamily, subfamily IF hydrolase, YfhB. The gene name comes from the E. coli gene. There is currently no information regarding the function of this gene.
Probab=99.76 E-value=3e-17 Score=123.42 Aligned_cols=98 Identities=18% Similarity=0.221 Sum_probs=78.2
Q ss_pred CCChhHHHHHH-HHHHCCCcEEEEcCCcHHhHHHHHHHcCC-CCCcEEecceeEecCCeeeeccCCCCCcCCCCHHHHHH
Q 029504 88 RLSPGIDELVK-KLKANNKNVYLISGGFRHMINPIASVLGI-PPENIFANQLLFKSSGEFLGFDANEPTSRSGGKAAAVQ 165 (192)
Q Consensus 88 ~~~~~~~e~l~-~l~~~g~~~~IvS~~~~~~~~~~l~~~g~-~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~K~~~l~ 165 (192)
.++|++.+.|+ +++++|++++|+|+++..+++.+++..++ ...+++++.+.+.+.|.+.+ +.+.+..|...++
T Consensus 94 ~l~pga~e~L~~~l~~~G~~v~IvSas~~~~~~~ia~~~~~~~~~~~i~t~le~~~gg~~~g-----~~c~g~~Kv~rl~ 168 (210)
T TIGR01545 94 TAFPLVAERLRQYLESSDADIWLITGSPQPLVEAVYFDSNFIHRLNLIASQIERGNGGWVLP-----LRCLGHEKVAQLE 168 (210)
T ss_pred CCCccHHHHHHHHHHhCCCEEEEEcCCcHHHHHHHHHhccccccCcEEEEEeEEeCCceEcC-----ccCCChHHHHHHH
Confidence 58999999996 67889999999999999999999988544 22388899988864455443 3344568999999
Q ss_pred HHHHHcCCceEEEEeCCccchhhhcc
Q 029504 166 QIRKAHAYKVLAMIGDGATDLEVSIF 191 (192)
Q Consensus 166 ~~~~~~g~~~~~~iGDs~~Di~~a~~ 191 (192)
+++.. ..+.++++|||.||++|+++
T Consensus 169 ~~~~~-~~~~~~aYsDS~~D~pmL~~ 193 (210)
T TIGR01545 169 QKIGS-PLKLYSGYSDSKQDNPLLAF 193 (210)
T ss_pred HHhCC-ChhheEEecCCcccHHHHHh
Confidence 88742 34678999999999999875
No 17
>COG0546 Gph Predicted phosphatases [General function prediction only]
Probab=99.76 E-value=1.1e-17 Score=126.81 Aligned_cols=91 Identities=19% Similarity=0.282 Sum_probs=75.3
Q ss_pred CCCChhHHHHHHHHHHCCCcEEEEcCCcHHhHHHHHHHcCCCCCcEEecceeEecCCeeeeccCCCCCcCCCCHHHHHHH
Q 029504 87 PRLSPGIDELVKKLKANNKNVYLISGGFRHMINPIASVLGIPPENIFANQLLFKSSGEFLGFDANEPTSRSGGKAAAVQQ 166 (192)
Q Consensus 87 ~~~~~~~~e~l~~l~~~g~~~~IvS~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~K~~~l~~ 166 (192)
..++||+.++|..|+++|++++|+|++.+..++.+++++|+. .+|.....- .....++| .+..+..
T Consensus 88 ~~~~~gv~e~L~~L~~~g~~l~i~T~k~~~~~~~~l~~~gl~--~~F~~i~g~--------~~~~~~KP----~P~~l~~ 153 (220)
T COG0546 88 SRLFPGVKELLAALKSAGYKLGIVTNKPERELDILLKALGLA--DYFDVIVGG--------DDVPPPKP----DPEPLLL 153 (220)
T ss_pred CccCCCHHHHHHHHHhCCCeEEEEeCCcHHHHHHHHHHhCCc--cccceEEcC--------CCCCCCCc----CHHHHHH
Confidence 368999999999999999999999999999999999999998 778765531 11222222 4577888
Q ss_pred HHHHcCCc--eEEEEeCCccchhhhcc
Q 029504 167 IRKAHAYK--VLAMIGDGATDLEVSIF 191 (192)
Q Consensus 167 ~~~~~g~~--~~~~iGDs~~Di~~a~~ 191 (192)
+++++|++ +++|||||.+|+.||+-
T Consensus 154 ~~~~~~~~~~~~l~VGDs~~Di~aA~~ 180 (220)
T COG0546 154 LLEKLGLDPEEALMVGDSLNDILAAKA 180 (220)
T ss_pred HHHHhCCChhheEEECCCHHHHHHHHH
Confidence 88888984 89999999999999974
No 18
>PRK13288 pyrophosphatase PpaX; Provisional
Probab=99.76 E-value=1.3e-17 Score=125.76 Aligned_cols=91 Identities=14% Similarity=0.169 Sum_probs=75.1
Q ss_pred CCCChhHHHHHHHHHHCCCcEEEEcCCcHHhHHHHHHHcCCCCCcEEecceeEecCCeeeeccCCCCCcCCCCHHHHHHH
Q 029504 87 PRLSPGIDELVKKLKANNKNVYLISGGFRHMINPIASVLGIPPENIFANQLLFKSSGEFLGFDANEPTSRSGGKAAAVQQ 166 (192)
Q Consensus 87 ~~~~~~~~e~l~~l~~~g~~~~IvS~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~K~~~l~~ 166 (192)
..++||+.++|++|+++|++++|+|++....+...++.+|+. .+|...+..+ ..... ..++..+..
T Consensus 81 ~~~~~g~~~~l~~L~~~g~~~~i~S~~~~~~~~~~l~~~gl~--~~f~~i~~~~--------~~~~~----Kp~p~~~~~ 146 (214)
T PRK13288 81 VTEYETVYETLKTLKKQGYKLGIVTTKMRDTVEMGLKLTGLD--EFFDVVITLD--------DVEHA----KPDPEPVLK 146 (214)
T ss_pred cccCcCHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHcCCh--hceeEEEecC--------cCCCC----CCCcHHHHH
Confidence 468999999999999999999999999999999999999998 7787654322 11111 135678888
Q ss_pred HHHHcCC--ceEEEEeCCccchhhhcc
Q 029504 167 IRKAHAY--KVLAMIGDGATDLEVSIF 191 (192)
Q Consensus 167 ~~~~~g~--~~~~~iGDs~~Di~~a~~ 191 (192)
++++++. +++++||||.+|+++|+.
T Consensus 147 ~~~~~~~~~~~~~~iGDs~~Di~aa~~ 173 (214)
T PRK13288 147 ALELLGAKPEEALMVGDNHHDILAGKN 173 (214)
T ss_pred HHHHcCCCHHHEEEECCCHHHHHHHHH
Confidence 8888887 889999999999999874
No 19
>TIGR01544 HAD-SF-IE haloacid dehalogenase superfamily, subfamily IE hydrolase, TIGR01544. This group of sequences was found during searches for members of the haloacid dehalogenase (HAD) superfamily. All of the conserved catalytic motifs are found. The placement of the variable domain between motifs 1 and 2 indicates membership in subfamily I of the superfamily, but these sequences are sufficiently different from any of the branches (IA, TIGR01493, TIGR01509, TIGR01549; IB, TIGR01488; IC, TIGR01494; ID, TIGR01658; IF TIGR01545) of that subfamily as to constitute a separate branch to now be called IE. Considering that the closest identifiable hit outside of the noise range is to a phosphoserine phosphatase, this group may be considered to be most closely allied to subfamily IB.
Probab=99.76 E-value=8.4e-17 Score=124.30 Aligned_cols=126 Identities=17% Similarity=0.302 Sum_probs=101.4
Q ss_pred HHHHHHhhcCC---CHHHHHHHHHhCCCCCChhHHHHHHHHHHCCCcEEEEcCCcHHhHHHHHHHcCCC--CCcEEecce
Q 029504 63 ALAARLSLFKP---SLSQVQDFLEKRPPRLSPGIDELVKKLKANNKNVYLISGGFRHMINPIASVLGIP--PENIFANQL 137 (192)
Q Consensus 63 ~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~e~l~~l~~~g~~~~IvS~~~~~~~~~~l~~~g~~--~~~~~~~~~ 137 (192)
+......++.+ ..+.+.+++.+....+.||+.+++++|+++|++++|+|++....++.+++.+|+. ...+++|.+
T Consensus 93 Ww~k~~~l~~~~~~~~e~i~~~v~~~~l~l~pG~~efl~~L~~~GIpv~IvS~G~~~~Ie~vL~~lgl~~~~~~IvSN~L 172 (277)
T TIGR01544 93 WWTKSHGLLVQQAFPKAKIKEIVAESDVMLKDGYENFFDKLQQHSIPVFIFSAGIGNVLEEVLRQAGVYHPNVKVVSNFM 172 (277)
T ss_pred HHHHHHHHHhcCCCCHHHHHHHHhhcCCccCcCHHHHHHHHHHCCCcEEEEeCCcHHHHHHHHHHcCCCCcCceEEeeeE
Confidence 33333344443 4566777777555689999999999999999999999999999999999999983 357899999
Q ss_pred eEecCCeeeeccCCCCCcCCCCHHHHHHH-HHHHcC--C--ceEEEEeCCccchhhhc
Q 029504 138 LFKSSGEFLGFDANEPTSRSGGKAAAVQQ-IRKAHA--Y--KVLAMIGDGATDLEVSI 190 (192)
Q Consensus 138 ~~~~~g~~~~~~~~~~~~~~~~K~~~l~~-~~~~~g--~--~~~~~iGDs~~Di~~a~ 190 (192)
.++.+|.++|. +.|..+..+|...+.+ ..+.++ . ++|+++|||.||++|+.
T Consensus 173 ~f~~dGvltG~--~~P~i~~~~K~~~v~~~~~~~~~~~~~~~~vI~vGDs~~Dl~ma~ 228 (277)
T TIGR01544 173 DFDEDGVLKGF--KGPLIHTFNKNHDVALRNTEYFNQLKDRSNIILLGDSQGDLRMAD 228 (277)
T ss_pred EECCCCeEeCC--CCCcccccccHHHHHHHHHHHhCccCCcceEEEECcChhhhhHhc
Confidence 99888999884 4677777789887664 666666 2 78999999999999985
No 20
>PLN02770 haloacid dehalogenase-like hydrolase family protein
Probab=99.75 E-value=4e-17 Score=125.89 Aligned_cols=91 Identities=10% Similarity=0.156 Sum_probs=74.6
Q ss_pred CCCChhHHHHHHHHHHCCCcEEEEcCCcHHhHHHHHHHcCCCCCcEEecceeEecCCeeeeccCCCCCcCCCCHHHHHHH
Q 029504 87 PRLSPGIDELVKKLKANNKNVYLISGGFRHMINPIASVLGIPPENIFANQLLFKSSGEFLGFDANEPTSRSGGKAAAVQQ 166 (192)
Q Consensus 87 ~~~~~~~~e~l~~l~~~g~~~~IvS~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~K~~~l~~ 166 (192)
..++||+.++|++|+++|++++|+|++....++..++++|+. .+|...+..+ ....++| ++..+..
T Consensus 107 ~~l~pgv~e~L~~L~~~g~~l~I~Tn~~~~~~~~~l~~~gl~--~~Fd~iv~~~--------~~~~~KP----~p~~~~~ 172 (248)
T PLN02770 107 LKPLNGLYKLKKWIEDRGLKRAAVTNAPRENAELMISLLGLS--DFFQAVIIGS--------ECEHAKP----HPDPYLK 172 (248)
T ss_pred CCcCccHHHHHHHHHHcCCeEEEEeCCCHHHHHHHHHHcCCh--hhCcEEEecC--------cCCCCCC----ChHHHHH
Confidence 578999999999999999999999999999999999999998 7776544222 2222222 4477888
Q ss_pred HHHHcCC--ceEEEEeCCccchhhhcc
Q 029504 167 IRKAHAY--KVLAMIGDGATDLEVSIF 191 (192)
Q Consensus 167 ~~~~~g~--~~~~~iGDs~~Di~~a~~ 191 (192)
.++++|+ ++|++|||+.+|+++|+.
T Consensus 173 a~~~~~~~~~~~l~vgDs~~Di~aA~~ 199 (248)
T PLN02770 173 ALEVLKVSKDHTFVFEDSVSGIKAGVA 199 (248)
T ss_pred HHHHhCCChhHEEEEcCCHHHHHHHHH
Confidence 8888887 889999999999999874
No 21
>PRK11590 hypothetical protein; Provisional
Probab=99.74 E-value=5.8e-17 Score=122.11 Aligned_cols=98 Identities=18% Similarity=0.229 Sum_probs=77.3
Q ss_pred CCChhHHHHH-HHHHHCCCcEEEEcCCcHHhHHHHHHHcCC-CCCcEEecceeEecCCeeeeccCCCCCcCCCCHHHHHH
Q 029504 88 RLSPGIDELV-KKLKANNKNVYLISGGFRHMINPIASVLGI-PPENIFANQLLFKSSGEFLGFDANEPTSRSGGKAAAVQ 165 (192)
Q Consensus 88 ~~~~~~~e~l-~~l~~~g~~~~IvS~~~~~~~~~~l~~~g~-~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~K~~~l~ 165 (192)
.++||+.+.| +.+++.|++++|+|+++..+++.+++.+|+ ..++++++.+.+...|.+.+ +.+.+..|...++
T Consensus 95 ~~~pga~e~L~~~l~~~G~~l~IvSas~~~~~~~il~~l~~~~~~~~i~t~l~~~~tg~~~g-----~~c~g~~K~~~l~ 169 (211)
T PRK11590 95 TAFPVVQERLTTYLLSSDADVWLITGSPQPLVEQVYFDTPWLPRVNLIASQMQRRYGGWVLT-----LRCLGHEKVAQLE 169 (211)
T ss_pred cCCccHHHHHHHHHHhCCCEEEEEeCCcHHHHHHHHHHccccccCceEEEEEEEEEccEECC-----ccCCChHHHHHHH
Confidence 5799999999 567889999999999999999999999994 11278888886643344433 3344568999999
Q ss_pred HHHHHcCCceEEEEeCCccchhhhcc
Q 029504 166 QIRKAHAYKVLAMIGDGATDLEVSIF 191 (192)
Q Consensus 166 ~~~~~~g~~~~~~iGDs~~Di~~a~~ 191 (192)
+++.. ....++++|||.||++|++.
T Consensus 170 ~~~~~-~~~~~~aY~Ds~~D~pmL~~ 194 (211)
T PRK11590 170 RKIGT-PLRLYSGYSDSKQDNPLLYF 194 (211)
T ss_pred HHhCC-CcceEEEecCCcccHHHHHh
Confidence 88742 34688999999999999875
No 22
>PRK10826 2-deoxyglucose-6-phosphatase; Provisional
Probab=99.73 E-value=1.8e-16 Score=120.25 Aligned_cols=91 Identities=13% Similarity=0.122 Sum_probs=75.3
Q ss_pred CCCChhHHHHHHHHHHCCCcEEEEcCCcHHhHHHHHHHcCCCCCcEEecceeEecCCeeeeccCCCCCcCCCCHHHHHHH
Q 029504 87 PRLSPGIDELVKKLKANNKNVYLISGGFRHMINPIASVLGIPPENIFANQLLFKSSGEFLGFDANEPTSRSGGKAAAVQQ 166 (192)
Q Consensus 87 ~~~~~~~~e~l~~l~~~g~~~~IvS~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~K~~~l~~ 166 (192)
..++||+.++|++|+++|++++|+|++....++.+++.+++. .+|...+..+ ..... ..++..+..
T Consensus 91 ~~~~~g~~~~l~~l~~~g~~~~i~S~~~~~~~~~~l~~~~l~--~~f~~~~~~~--------~~~~~----Kp~~~~~~~ 156 (222)
T PRK10826 91 RPLLPGVREALALCKAQGLKIGLASASPLHMLEAVLTMFDLR--DYFDALASAE--------KLPYS----KPHPEVYLN 156 (222)
T ss_pred CCCCCCHHHHHHHHHHCCCeEEEEeCCcHHHHHHHHHhCcch--hcccEEEEcc--------cCCCC----CCCHHHHHH
Confidence 579999999999999999999999999999999999999998 7777544221 11111 134578999
Q ss_pred HHHHcCC--ceEEEEeCCccchhhhcc
Q 029504 167 IRKAHAY--KVLAMIGDGATDLEVSIF 191 (192)
Q Consensus 167 ~~~~~g~--~~~~~iGDs~~Di~~a~~ 191 (192)
+++++|+ ++|++|||+.+|+++|+.
T Consensus 157 ~~~~~~~~~~~~~~igDs~~Di~aA~~ 183 (222)
T PRK10826 157 CAAKLGVDPLTCVALEDSFNGMIAAKA 183 (222)
T ss_pred HHHHcCCCHHHeEEEcCChhhHHHHHH
Confidence 9999998 899999999999999974
No 23
>KOG3120 consensus Predicted haloacid dehalogenase-like hydrolase [General function prediction only]
Probab=99.72 E-value=5.3e-17 Score=118.91 Aligned_cols=166 Identities=16% Similarity=0.255 Sum_probs=127.2
Q ss_pred cCCcEEecCCCcccchhHh-hHHHHHHHH--HHHHHHHhCCCcc---HHHHHHHHHhhcC--C-CHHHHHHHHHhCCCCC
Q 029504 19 NGLPGCLASLFIENNSCLI-FLDGLTEFI--FVFFARAMGGSVP---FEEALAARLSLFK--P-SLSQVQDFLEKRPPRL 89 (192)
Q Consensus 19 ~~k~iifD~~~~DGTL~~~-~~~~~~~~~--~~~~~~~~~~~~~---~~~~~~~~~~~~~--~-~~~~~~~~~~~~~~~~ 89 (192)
+..+++|| ||-||++. +...+...+ ..++.+ ++..+. |.+++.+.+..++ + ...++.+.++..| +
T Consensus 12 ~ril~~FD---FD~TIid~dSD~wVv~~lp~~~l~~q-L~~t~p~~~Wne~M~rv~k~Lheqgv~~~~ik~~~r~iP--~ 85 (256)
T KOG3120|consen 12 PRILLVFD---FDRTIIDQDSDNWVVDELPTTDLFNQ-LRDTYPKGFWNELMDRVFKELHEQGVRIAEIKQVLRSIP--I 85 (256)
T ss_pred CcEEEEEe---cCceeecCCcchHHHHhcccchhHHH-HHHhcccchHHHHHHHHHHHHHHcCCCHHHHHHHHhcCC--C
Confidence 67899999 99999998 766666665 333222 223444 7888888888777 3 4677888888886 8
Q ss_pred ChhHHHHHHHHHHCCC-cEEEEcCCcHHhHHHHHHHcCCCC--CcEEecceeEecCCeeeeccCCC-----CCcCCCCHH
Q 029504 90 SPGIDELVKKLKANNK-NVYLISGGFRHMINPIASVLGIPP--ENIFANQLLFKSSGEFLGFDANE-----PTSRSGGKA 161 (192)
Q Consensus 90 ~~~~~e~l~~l~~~g~-~~~IvS~~~~~~~~~~l~~~g~~~--~~~~~~~~~~~~~g~~~~~~~~~-----~~~~~~~K~ 161 (192)
.||+.++++.+++.|. .+.|||.....+++.++++.|+.. ..+|.|...++.+|.+.-..+.. ..|..-+|+
T Consensus 86 ~Pgmv~lik~~ak~g~~eliIVSDaNsfFIe~~Lea~~~~d~F~~IfTNPa~~da~G~L~v~pyH~~hsC~~CPsNmCKg 165 (256)
T KOG3120|consen 86 VPGMVRLIKSAAKLGCFELIIVSDANSFFIEEILEAAGIHDLFSEIFTNPACVDASGRLLVRPYHTQHSCNLCPSNMCKG 165 (256)
T ss_pred CccHHHHHHHHHhCCCceEEEEecCchhHHHHHHHHccHHHHHHHHhcCCcccCCCCcEEeecCCCCCccCcCchhhhhh
Confidence 8999999999999996 999999999999999999999873 34566777788888875433322 233445899
Q ss_pred HHHHHHHHHc---CC--ceEEEEeCCccchhhhc
Q 029504 162 AAVQQIRKAH---AY--KVLAMIGDGATDLEVSI 190 (192)
Q Consensus 162 ~~l~~~~~~~---g~--~~~~~iGDs~~Di~~a~ 190 (192)
..+.++..+. |+ ++++|+|||.||+++..
T Consensus 166 ~Vl~~~~~s~~~~gv~yer~iYvGDG~nD~CP~l 199 (256)
T KOG3120|consen 166 LVLDELVASQLKDGVRYERLIYVGDGANDFCPVL 199 (256)
T ss_pred HHHHHHHHHHhhcCCceeeEEEEcCCCCCcCcch
Confidence 9999887654 44 79999999999998653
No 24
>PLN03243 haloacid dehalogenase-like hydrolase; Provisional
Probab=99.72 E-value=1.2e-16 Score=123.89 Aligned_cols=91 Identities=18% Similarity=0.249 Sum_probs=74.8
Q ss_pred CCCChhHHHHHHHHHHCCCcEEEEcCCcHHhHHHHHHHcCCCCCcEEecceeEecCCeeeeccCCCCCcCCCCHHHHHHH
Q 029504 87 PRLSPGIDELVKKLKANNKNVYLISGGFRHMINPIASVLGIPPENIFANQLLFKSSGEFLGFDANEPTSRSGGKAAAVQQ 166 (192)
Q Consensus 87 ~~~~~~~~e~l~~l~~~g~~~~IvS~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~K~~~l~~ 166 (192)
..++||+.++|+.|+++|++++|+|++....++.+++++|+. .+|...+..+ .....+ .++..+..
T Consensus 108 ~~l~pg~~e~L~~L~~~g~~l~I~Tn~~~~~~~~~l~~~gl~--~~Fd~ii~~~--------d~~~~K----P~Pe~~~~ 173 (260)
T PLN03243 108 YRLRPGSREFVQALKKHEIPIAVASTRPRRYLERAIEAVGME--GFFSVVLAAE--------DVYRGK----PDPEMFMY 173 (260)
T ss_pred cccCCCHHHHHHHHHHCCCEEEEEeCcCHHHHHHHHHHcCCH--hhCcEEEecc--------cCCCCC----CCHHHHHH
Confidence 568999999999999999999999999999999999999997 6776544322 122222 24578888
Q ss_pred HHHHcCC--ceEEEEeCCccchhhhcc
Q 029504 167 IRKAHAY--KVLAMIGDGATDLEVSIF 191 (192)
Q Consensus 167 ~~~~~g~--~~~~~iGDs~~Di~~a~~ 191 (192)
.++++|+ ++|++||||.+|+.+|+.
T Consensus 174 a~~~l~~~p~~~l~IgDs~~Di~aA~~ 200 (260)
T PLN03243 174 AAERLGFIPERCIVFGNSNSSVEAAHD 200 (260)
T ss_pred HHHHhCCChHHeEEEcCCHHHHHHHHH
Confidence 8998897 889999999999999874
No 25
>PRK13226 phosphoglycolate phosphatase; Provisional
Probab=99.71 E-value=2.9e-16 Score=119.72 Aligned_cols=91 Identities=12% Similarity=0.071 Sum_probs=72.6
Q ss_pred CCCChhHHHHHHHHHHCCCcEEEEcCCcHHhHHHHHHHcCCCCCcEEecceeEecCCeeeeccCCCCCcCCCCHHHHHHH
Q 029504 87 PRLSPGIDELVKKLKANNKNVYLISGGFRHMINPIASVLGIPPENIFANQLLFKSSGEFLGFDANEPTSRSGGKAAAVQQ 166 (192)
Q Consensus 87 ~~~~~~~~e~l~~l~~~g~~~~IvS~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~K~~~l~~ 166 (192)
..++||+.++|++|+++|++++|+|++....+...++.+|+. .+|...... ......+ .++..+..
T Consensus 94 ~~~~pg~~~~L~~L~~~g~~l~i~Tn~~~~~~~~~l~~~~l~--~~f~~i~~~--------~~~~~~K----P~p~~~~~ 159 (229)
T PRK13226 94 SQLFDGVEGMLQRLECAGCVWGIVTNKPEYLARLILPQLGWE--QRCAVLIGG--------DTLAERK----PHPLPLLV 159 (229)
T ss_pred CeeCCCHHHHHHHHHHCCCeEEEECCCCHHHHHHHHHHcCch--hcccEEEec--------CcCCCCC----CCHHHHHH
Confidence 468999999999999999999999999999999999999987 666532211 1111122 24577888
Q ss_pred HHHHcCC--ceEEEEeCCccchhhhcc
Q 029504 167 IRKAHAY--KVLAMIGDGATDLEVSIF 191 (192)
Q Consensus 167 ~~~~~g~--~~~~~iGDs~~Di~~a~~ 191 (192)
+++++|+ ++|++|||+.+|+.+|+.
T Consensus 160 ~~~~l~~~p~~~l~IGDs~~Di~aA~~ 186 (229)
T PRK13226 160 AAERIGVAPTDCVYVGDDERDILAARA 186 (229)
T ss_pred HHHHhCCChhhEEEeCCCHHHHHHHHH
Confidence 9998887 889999999999999874
No 26
>PRK14988 GMP/IMP nucleotidase; Provisional
Probab=99.70 E-value=4e-16 Score=118.56 Aligned_cols=91 Identities=15% Similarity=0.134 Sum_probs=73.9
Q ss_pred CCCChhHHHHHHHHHHCCCcEEEEcCCcHHhHHHHHHHcCCCCCcEEecceeEecCCeeeeccCCCCCcCCCCHHHHHHH
Q 029504 87 PRLSPGIDELVKKLKANNKNVYLISGGFRHMINPIASVLGIPPENIFANQLLFKSSGEFLGFDANEPTSRSGGKAAAVQQ 166 (192)
Q Consensus 87 ~~~~~~~~e~l~~l~~~g~~~~IvS~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~K~~~l~~ 166 (192)
..++||+.++|+.|+++|++++|+|++....++..++++|+. .+|...+..+ ....++ .++..+..
T Consensus 92 ~~~~~g~~e~L~~Lk~~g~~~~i~Tn~~~~~~~~~l~~~~l~--~~fd~iv~s~--------~~~~~K----P~p~~~~~ 157 (224)
T PRK14988 92 AVLREDTVPFLEALKASGKRRILLTNAHPHNLAVKLEHTGLD--AHLDLLLSTH--------TFGYPK----EDQRLWQA 157 (224)
T ss_pred CCcCCCHHHHHHHHHhCCCeEEEEeCcCHHHHHHHHHHCCcH--HHCCEEEEee--------eCCCCC----CCHHHHHH
Confidence 468999999999999999999999999999999999999987 6676544222 112222 24578888
Q ss_pred HHHHcCC--ceEEEEeCCccchhhhcc
Q 029504 167 IRKAHAY--KVLAMIGDGATDLEVSIF 191 (192)
Q Consensus 167 ~~~~~g~--~~~~~iGDs~~Di~~a~~ 191 (192)
.++++|+ ++|++|||+.+|+.+|+.
T Consensus 158 ~~~~~~~~p~~~l~igDs~~di~aA~~ 184 (224)
T PRK14988 158 VAEHTGLKAERTLFIDDSEPILDAAAQ 184 (224)
T ss_pred HHHHcCCChHHEEEEcCCHHHHHHHHH
Confidence 8899997 889999999999999864
No 27
>TIGR02009 PGMB-YQAB-SF beta-phosphoglucomutase family hydrolase. All of these are members of the larger Haloacid dehalogenase (HAD) subfamily IA and include the "variant 3" glu-asp version of the third conserved HAD domain (TIGR01509).
Probab=99.70 E-value=6.2e-16 Score=113.84 Aligned_cols=89 Identities=17% Similarity=0.221 Sum_probs=69.6
Q ss_pred CCCChhHHHHHHHHHHCCCcEEEEcCCcHHhHHHHHHHcCCCCCcEEecceeEecCCeeeeccCCCCCcCCCCHHHHHHH
Q 029504 87 PRLSPGIDELVKKLKANNKNVYLISGGFRHMINPIASVLGIPPENIFANQLLFKSSGEFLGFDANEPTSRSGGKAAAVQQ 166 (192)
Q Consensus 87 ~~~~~~~~e~l~~l~~~g~~~~IvS~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~K~~~l~~ 166 (192)
..++||+.++|++|+++|++++|+|++ ..++.+++.+|+. .+|...+..+ ...... .+...+..
T Consensus 87 ~~~~~g~~~~l~~l~~~g~~i~i~S~~--~~~~~~l~~~~l~--~~f~~v~~~~--------~~~~~k----p~~~~~~~ 150 (185)
T TIGR02009 87 AEVLPGIENFLKRLKKKGIAVGLGSSS--KNADRILAKLGLT--DYFDAIVDAD--------EVKEGK----PHPETFLL 150 (185)
T ss_pred CCCCcCHHHHHHHHHHcCCeEEEEeCc--hhHHHHHHHcChH--HHCCEeeehh--------hCCCCC----CChHHHHH
Confidence 579999999999999999999999998 6678899999987 6665433211 111111 24567788
Q ss_pred HHHHcCC--ceEEEEeCCccchhhhcc
Q 029504 167 IRKAHAY--KVLAMIGDGATDLEVSIF 191 (192)
Q Consensus 167 ~~~~~g~--~~~~~iGDs~~Di~~a~~ 191 (192)
+++++|+ +++++|||+.+|+.+|+.
T Consensus 151 ~~~~~~~~~~~~v~IgD~~~di~aA~~ 177 (185)
T TIGR02009 151 AAELLGVSPNECVVFEDALAGVQAARA 177 (185)
T ss_pred HHHHcCCCHHHeEEEeCcHhhHHHHHH
Confidence 8888887 889999999999999874
No 28
>PRK13225 phosphoglycolate phosphatase; Provisional
Probab=99.70 E-value=4.1e-16 Score=121.65 Aligned_cols=88 Identities=22% Similarity=0.372 Sum_probs=72.7
Q ss_pred CCCChhHHHHHHHHHHCCCcEEEEcCCcHHhHHHHHHHcCCCCCcEEecceeEecCCeeeeccCCCCCcCCCCHHHHHHH
Q 029504 87 PRLSPGIDELVKKLKANNKNVYLISGGFRHMINPIASVLGIPPENIFANQLLFKSSGEFLGFDANEPTSRSGGKAAAVQQ 166 (192)
Q Consensus 87 ~~~~~~~~e~l~~l~~~g~~~~IvS~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~K~~~l~~ 166 (192)
..++||+.++|++|+++|++++|+|++....++..++.+|+. .+|.... . +. +. ..|...+..
T Consensus 141 ~~l~pg~~e~L~~L~~~gi~laIvSn~~~~~~~~~L~~~gl~--~~F~~vi--~------~~----~~---~~k~~~~~~ 203 (273)
T PRK13225 141 LQLFPGVADLLAQLRSRSLCLGILSSNSRQNIEAFLQRQGLR--SLFSVVQ--A------GT----PI---LSKRRALSQ 203 (273)
T ss_pred CCcCCCHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHcCCh--hheEEEE--e------cC----CC---CCCHHHHHH
Confidence 468999999999999999999999999999999999999998 7776432 1 10 11 135677888
Q ss_pred HHHHcCC--ceEEEEeCCccchhhhcc
Q 029504 167 IRKAHAY--KVLAMIGDGATDLEVSIF 191 (192)
Q Consensus 167 ~~~~~g~--~~~~~iGDs~~Di~~a~~ 191 (192)
+++++++ ++|++|||+.+|+.+|+.
T Consensus 204 ~l~~~~~~p~~~l~IGDs~~Di~aA~~ 230 (273)
T PRK13225 204 LVAREGWQPAAVMYVGDETRDVEAARQ 230 (273)
T ss_pred HHHHhCcChhHEEEECCCHHHHHHHHH
Confidence 8888886 789999999999999874
No 29
>PLN02575 haloacid dehalogenase-like hydrolase
Probab=99.69 E-value=8.1e-16 Score=123.89 Aligned_cols=91 Identities=16% Similarity=0.184 Sum_probs=75.6
Q ss_pred CCCChhHHHHHHHHHHCCCcEEEEcCCcHHhHHHHHHHcCCCCCcEEecceeEecCCeeeeccCCCCCcCCCCHHHHHHH
Q 029504 87 PRLSPGIDELVKKLKANNKNVYLISGGFRHMINPIASVLGIPPENIFANQLLFKSSGEFLGFDANEPTSRSGGKAAAVQQ 166 (192)
Q Consensus 87 ~~~~~~~~e~l~~l~~~g~~~~IvS~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~K~~~l~~ 166 (192)
..++||+.++|+.|+++|++++|+|++....++.+++.+|+. .+|...+..+ ..... ..+++.+..
T Consensus 215 ~~l~pGa~ElL~~Lk~~GiklaIaSn~~~~~~~~~L~~lgL~--~yFd~Iv~sd--------dv~~~----KP~Peifl~ 280 (381)
T PLN02575 215 YRLRTGSQEFVNVLMNYKIPMALVSTRPRKTLENAIGSIGIR--GFFSVIVAAE--------DVYRG----KPDPEMFIY 280 (381)
T ss_pred CCcCcCHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHcCCH--HHceEEEecC--------cCCCC----CCCHHHHHH
Confidence 468999999999999999999999999999999999999998 7777654322 11111 135688889
Q ss_pred HHHHcCC--ceEEEEeCCccchhhhcc
Q 029504 167 IRKAHAY--KVLAMIGDGATDLEVSIF 191 (192)
Q Consensus 167 ~~~~~g~--~~~~~iGDs~~Di~~a~~ 191 (192)
.++++|+ ++|++|||+.+|+++|+-
T Consensus 281 A~~~lgl~Peecl~IGDS~~DIeAAk~ 307 (381)
T PLN02575 281 AAQLLNFIPERCIVFGNSNQTVEAAHD 307 (381)
T ss_pred HHHHcCCCcccEEEEcCCHHHHHHHHH
Confidence 9999997 899999999999999874
No 30
>TIGR01449 PGP_bact 2-phosphoglycolate phosphatase, prokaryotic. This enzyme is a member of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolase enzymes (pfam00702).
Probab=99.69 E-value=9.1e-16 Score=115.45 Aligned_cols=91 Identities=13% Similarity=0.238 Sum_probs=73.7
Q ss_pred CCCChhHHHHHHHHHHCCCcEEEEcCCcHHhHHHHHHHcCCCCCcEEecceeEecCCeeeeccCCCCCcCCCCHHHHHHH
Q 029504 87 PRLSPGIDELVKKLKANNKNVYLISGGFRHMINPIASVLGIPPENIFANQLLFKSSGEFLGFDANEPTSRSGGKAAAVQQ 166 (192)
Q Consensus 87 ~~~~~~~~e~l~~l~~~g~~~~IvS~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~K~~~l~~ 166 (192)
..++||+.++|+.|+++|++++|+|++....++.+++++|+. .+|...+.. ......+ .++..+..
T Consensus 84 ~~~~~g~~~~L~~l~~~g~~~~i~S~~~~~~~~~~l~~~~l~--~~f~~~~~~--------~~~~~~K----p~p~~~~~ 149 (213)
T TIGR01449 84 TSVFPGVEATLGALRAKGLRLGLVTNKPTPLARPLLELLGLA--KYFSVLIGG--------DSLAQRK----PHPDPLLL 149 (213)
T ss_pred CccCCCHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHcCcH--hhCcEEEec--------CCCCCCC----CChHHHHH
Confidence 468999999999999999999999999999999999999997 666533211 1111111 24688999
Q ss_pred HHHHcCC--ceEEEEeCCccchhhhcc
Q 029504 167 IRKAHAY--KVLAMIGDGATDLEVSIF 191 (192)
Q Consensus 167 ~~~~~g~--~~~~~iGDs~~Di~~a~~ 191 (192)
+++++|+ ++|++||||.+|+++|+.
T Consensus 150 ~~~~~~~~~~~~~~igDs~~d~~aa~~ 176 (213)
T TIGR01449 150 AAERLGVAPQQMVYVGDSRVDIQAARA 176 (213)
T ss_pred HHHHcCCChhHeEEeCCCHHHHHHHHH
Confidence 9999987 889999999999999874
No 31
>TIGR01428 HAD_type_II 2-haloalkanoic acid dehalogenase, type II. Note that the Type I HAD enzymes have not yet been fully characterized, but clearly utilize a substantially different catalytic mechanism and are thus unlikely to be related.
Probab=99.69 E-value=2e-15 Score=112.57 Aligned_cols=91 Identities=14% Similarity=0.146 Sum_probs=73.4
Q ss_pred CCCChhHHHHHHHHHHCCCcEEEEcCCcHHhHHHHHHHcCCCCCcEEecceeEecCCeeeeccCCCCCcCCCCHHHHHHH
Q 029504 87 PRLSPGIDELVKKLKANNKNVYLISGGFRHMINPIASVLGIPPENIFANQLLFKSSGEFLGFDANEPTSRSGGKAAAVQQ 166 (192)
Q Consensus 87 ~~~~~~~~e~l~~l~~~g~~~~IvS~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~K~~~l~~ 166 (192)
..++||+.++|++|+++|++++|+||+....++..++.+|+. .+|...+..+ ..+..+| +...+..
T Consensus 91 ~~~~~~~~~~L~~L~~~g~~~~i~Sn~~~~~~~~~l~~~gl~--~~fd~i~~s~--------~~~~~KP----~~~~~~~ 156 (198)
T TIGR01428 91 LPPHPDVPAGLRALKERGYRLAILSNGSPAMLKSLVKHAGLD--DPFDAVLSAD--------AVRAYKP----APQVYQL 156 (198)
T ss_pred CCCCCCHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHCCCh--hhhheeEehh--------hcCCCCC----CHHHHHH
Confidence 458899999999999999999999999999999999999987 6665443222 1112222 4578888
Q ss_pred HHHHcCC--ceEEEEeCCccchhhhcc
Q 029504 167 IRKAHAY--KVLAMIGDGATDLEVSIF 191 (192)
Q Consensus 167 ~~~~~g~--~~~~~iGDs~~Di~~a~~ 191 (192)
+++++|+ ++|++|||+.+|+.+|+.
T Consensus 157 ~~~~~~~~p~~~~~vgD~~~Di~~A~~ 183 (198)
T TIGR01428 157 ALEALGVPPDEVLFVASNPWDLGGAKK 183 (198)
T ss_pred HHHHhCCChhhEEEEeCCHHHHHHHHH
Confidence 8888887 889999999999999864
No 32
>PRK11587 putative phosphatase; Provisional
Probab=99.68 E-value=1.8e-15 Score=114.46 Aligned_cols=90 Identities=10% Similarity=0.063 Sum_probs=68.4
Q ss_pred CCCChhHHHHHHHHHHCCCcEEEEcCCcHHhHHHHHHHcCCCCCcEEecceeEecCCeeeeccCCCCCcCCCCHHHHHHH
Q 029504 87 PRLSPGIDELVKKLKANNKNVYLISGGFRHMINPIASVLGIPPENIFANQLLFKSSGEFLGFDANEPTSRSGGKAAAVQQ 166 (192)
Q Consensus 87 ~~~~~~~~e~l~~l~~~g~~~~IvS~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~K~~~l~~ 166 (192)
..++||+.++|+.|+++|++++|+|++........++..++. . +...+ +.......+| ++..+..
T Consensus 82 ~~~~pg~~e~L~~L~~~g~~~~ivTn~~~~~~~~~l~~~~l~--~-~~~i~--------~~~~~~~~KP----~p~~~~~ 146 (218)
T PRK11587 82 ITALPGAIALLNHLNKLGIPWAIVTSGSVPVASARHKAAGLP--A-PEVFV--------TAERVKRGKP----EPDAYLL 146 (218)
T ss_pred ceeCcCHHHHHHHHHHcCCcEEEEcCCCchHHHHHHHhcCCC--C-ccEEE--------EHHHhcCCCC----CcHHHHH
Confidence 468999999999999999999999999888888888888874 2 22111 1111122222 3477788
Q ss_pred HHHHcCC--ceEEEEeCCccchhhhcc
Q 029504 167 IRKAHAY--KVLAMIGDGATDLEVSIF 191 (192)
Q Consensus 167 ~~~~~g~--~~~~~iGDs~~Di~~a~~ 191 (192)
.++++|+ ++|++||||.+|+.+|+.
T Consensus 147 ~~~~~g~~p~~~l~igDs~~di~aA~~ 173 (218)
T PRK11587 147 GAQLLGLAPQECVVVEDAPAGVLSGLA 173 (218)
T ss_pred HHHHcCCCcccEEEEecchhhhHHHHH
Confidence 8888887 899999999999999874
No 33
>TIGR01454 AHBA_synth_RP 3-amino-5-hydroxybenoic acid synthesis related protein. The most closely related enzyme below the noise cutoff is IndB which is involved in the biosynthesis of Indigoidine in Pectobacterium (Erwinia) chrysanthemi, a gamma proteobacter. This enzyme is similarly related to PGP. In this case, too it is unclear what role would be be played by a PGPase activity.
Probab=99.67 E-value=1.4e-15 Score=114.03 Aligned_cols=91 Identities=20% Similarity=0.306 Sum_probs=74.4
Q ss_pred CCCChhHHHHHHHHHHCCCcEEEEcCCcHHhHHHHHHHcCCCCCcEEecceeEecCCeeeeccCCCCCcCCCCHHHHHHH
Q 029504 87 PRLSPGIDELVKKLKANNKNVYLISGGFRHMINPIASVLGIPPENIFANQLLFKSSGEFLGFDANEPTSRSGGKAAAVQQ 166 (192)
Q Consensus 87 ~~~~~~~~e~l~~l~~~g~~~~IvS~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~K~~~l~~ 166 (192)
..++||+.++|++|+++|++++|+|++....++..++.+|+. .+|...+..+ ....+ ..+...+..
T Consensus 74 ~~~~~g~~~~L~~L~~~g~~~~i~Sn~~~~~~~~~l~~~~l~--~~f~~i~~~~--------~~~~~----KP~~~~~~~ 139 (205)
T TIGR01454 74 VEVFPGVPELLAELRADGVGTAIATGKSGPRARSLLEALGLL--PLFDHVIGSD--------EVPRP----KPAPDIVRE 139 (205)
T ss_pred cccCCCHHHHHHHHHHCCCeEEEEeCCchHHHHHHHHHcCCh--hheeeEEecC--------cCCCC----CCChHHHHH
Confidence 578999999999999999999999999999999999999997 6676443221 11111 135688889
Q ss_pred HHHHcCC--ceEEEEeCCccchhhhcc
Q 029504 167 IRKAHAY--KVLAMIGDGATDLEVSIF 191 (192)
Q Consensus 167 ~~~~~g~--~~~~~iGDs~~Di~~a~~ 191 (192)
+++++|+ ++|++|||+.+|+.+|+.
T Consensus 140 ~~~~~~~~~~~~l~igD~~~Di~aA~~ 166 (205)
T TIGR01454 140 ALRLLDVPPEDAVMVGDAVTDLASARA 166 (205)
T ss_pred HHHHcCCChhheEEEcCCHHHHHHHHH
Confidence 9999987 889999999999999875
No 34
>TIGR03351 PhnX-like phosphonatase-like hydrolase. This clade of sequences are the closest homologs to the PhnX enzyme, phosphonoacetaldehyde (Pald) hydrolase (phosphonatase, TIGR01422). This phosphonatase-like enzyme and PhnX itself are members of the haloacid dehalogenase (HAD) superfamily (pfam00702) having a a number of distinctive features that set them apart from typical HAD enzymes. The typical HAD N-terminal motif DxDx(T/V) here is DxAGT and the usual conserved lysine prior to the C-terminal motif is instead an arginine. Also distinctive of phosphonatase, and particular to its bi-catalytic mechanism is a conserved lysine in the variable "cap" domain. This lysine forms a Schiff base with the aldehyde of phosphonoacetaldehyde, providing, through the resulting positive charge, a polarization of the C-P bond necesary for cleavage as well as a route to the initial product of cleavage, an ene-amine. The conservation of these elements in this phosphonatase-like enzyme suggests that the
Probab=99.67 E-value=1.6e-15 Score=114.76 Aligned_cols=93 Identities=20% Similarity=0.239 Sum_probs=71.8
Q ss_pred CCCChhHHHHHHHHHHCCCcEEEEcCCcHHhHHHHHHHcCCCCCcEEecceeEecCCeeeeccCCCCCcCCCCHHHHHHH
Q 029504 87 PRLSPGIDELVKKLKANNKNVYLISGGFRHMINPIASVLGIPPENIFANQLLFKSSGEFLGFDANEPTSRSGGKAAAVQQ 166 (192)
Q Consensus 87 ~~~~~~~~e~l~~l~~~g~~~~IvS~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~K~~~l~~ 166 (192)
..++||+.++|++|+++|++++|+|++....++..++.+|+...++|...+..+ ..... ..++..+..
T Consensus 86 ~~l~~G~~~~L~~L~~~g~~~~ivT~~~~~~~~~~l~~~~l~~~~~f~~i~~~~--------~~~~~----KP~p~~~~~ 153 (220)
T TIGR03351 86 PVALPGAEEAFRSLRSSGIKVALTTGFDRDTAERLLEKLGWTVGDDVDAVVCPS--------DVAAG----RPAPDLILR 153 (220)
T ss_pred CccCCCHHHHHHHHHHCCCEEEEEeCCchHHHHHHHHHhhhhhhccCCEEEcCC--------cCCCC----CCCHHHHHH
Confidence 479999999999999999999999999999999999999886223444322111 11111 125688888
Q ss_pred HHHHcCC---ceEEEEeCCccchhhhcc
Q 029504 167 IRKAHAY---KVLAMIGDGATDLEVSIF 191 (192)
Q Consensus 167 ~~~~~g~---~~~~~iGDs~~Di~~a~~ 191 (192)
.++++|+ ++|++|||+.+|+.+|+-
T Consensus 154 a~~~~~~~~~~~~~~igD~~~Di~aa~~ 181 (220)
T TIGR03351 154 AMELTGVQDVQSVAVAGDTPNDLEAGIN 181 (220)
T ss_pred HHHHcCCCChhHeEEeCCCHHHHHHHHH
Confidence 8888886 589999999999999874
No 35
>PRK09449 dUMP phosphatase; Provisional
Probab=99.67 E-value=3.5e-15 Score=113.22 Aligned_cols=90 Identities=18% Similarity=0.247 Sum_probs=71.2
Q ss_pred CCCChhHHHHHHHHHHCCCcEEEEcCCcHHhHHHHHHHcCCCCCcEEecceeEecCCeeeeccCCCCCcCCCCHHHHHHH
Q 029504 87 PRLSPGIDELVKKLKANNKNVYLISGGFRHMINPIASVLGIPPENIFANQLLFKSSGEFLGFDANEPTSRSGGKAAAVQQ 166 (192)
Q Consensus 87 ~~~~~~~~e~l~~l~~~g~~~~IvS~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~K~~~l~~ 166 (192)
..++||+.++|+.|+ +|++++|+||+....++..++.+|+. .+|...+..+ ..+..+| +...+..
T Consensus 94 ~~~~~g~~~~L~~L~-~~~~~~i~Tn~~~~~~~~~l~~~~l~--~~fd~v~~~~--------~~~~~KP----~p~~~~~ 158 (224)
T PRK09449 94 CTPLPGAVELLNALR-GKVKMGIITNGFTELQQVRLERTGLR--DYFDLLVISE--------QVGVAKP----DVAIFDY 158 (224)
T ss_pred CccCccHHHHHHHHH-hCCeEEEEeCCcHHHHHHHHHhCChH--HHcCEEEEEC--------ccCCCCC----CHHHHHH
Confidence 468999999999999 68999999999999999999999997 6676544222 1112222 4578888
Q ss_pred HHHHcCC---ceEEEEeCCc-cchhhhcc
Q 029504 167 IRKAHAY---KVLAMIGDGA-TDLEVSIF 191 (192)
Q Consensus 167 ~~~~~g~---~~~~~iGDs~-~Di~~a~~ 191 (192)
+++++|+ ++|++|||+. +|+.+|+.
T Consensus 159 ~~~~~~~~~~~~~~~vgD~~~~Di~~A~~ 187 (224)
T PRK09449 159 ALEQMGNPDRSRVLMVGDNLHSDILGGIN 187 (224)
T ss_pred HHHHcCCCCcccEEEEcCCcHHHHHHHHH
Confidence 8998885 5799999998 79999874
No 36
>TIGR02253 CTE7 HAD superfamily (subfamily IA) hydrolase, TIGR02253. This family is a member of the haloacid dehalogenase (HAD) superfamily of hydrolases which are characterized by three conserved sequence motifs. By virtue of an alpha helical domain in-between the first and second conserved motif, this family is a member of subfamily IA (TIGR01549).
Probab=99.67 E-value=2.1e-15 Score=114.16 Aligned_cols=91 Identities=15% Similarity=0.218 Sum_probs=73.7
Q ss_pred CCCChhHHHHHHHHHHCCCcEEEEcCCcHHhHHHHHHHcCCCCCcEEecceeEecCCeeeeccCCCCCcCCCCHHHHHHH
Q 029504 87 PRLSPGIDELVKKLKANNKNVYLISGGFRHMINPIASVLGIPPENIFANQLLFKSSGEFLGFDANEPTSRSGGKAAAVQQ 166 (192)
Q Consensus 87 ~~~~~~~~e~l~~l~~~g~~~~IvS~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~K~~~l~~ 166 (192)
..++||+.++|++|+++|++++|+|++....+...++.+|+. .+|...+..+ ..+..+ .++..+..
T Consensus 93 ~~~~~g~~~~L~~L~~~g~~~~i~Tn~~~~~~~~~l~~~~l~--~~f~~i~~~~--------~~~~~K----P~~~~~~~ 158 (221)
T TIGR02253 93 LRVYPGVRDTLMELRESGYRLGIITDGLPVKQWEKLERLGVR--DFFDAVITSE--------EEGVEK----PHPKIFYA 158 (221)
T ss_pred CCCCCCHHHHHHHHHHCCCEEEEEeCCchHHHHHHHHhCChH--HhccEEEEec--------cCCCCC----CCHHHHHH
Confidence 468999999999999999999999999999999999999998 7776544222 111121 24577888
Q ss_pred HHHHcCC--ceEEEEeCCc-cchhhhcc
Q 029504 167 IRKAHAY--KVLAMIGDGA-TDLEVSIF 191 (192)
Q Consensus 167 ~~~~~g~--~~~~~iGDs~-~Di~~a~~ 191 (192)
+++++|+ ++|++||||. +|+.+|+.
T Consensus 159 ~~~~~~~~~~~~~~igDs~~~di~~A~~ 186 (221)
T TIGR02253 159 ALKRLGVKPEEAVMVGDRLDKDIKGAKN 186 (221)
T ss_pred HHHHcCCChhhEEEECCChHHHHHHHHH
Confidence 8999997 8899999998 99999874
No 37
>PRK13223 phosphoglycolate phosphatase; Provisional
Probab=99.67 E-value=6.1e-16 Score=120.82 Aligned_cols=91 Identities=18% Similarity=0.211 Sum_probs=72.7
Q ss_pred CCCChhHHHHHHHHHHCCCcEEEEcCCcHHhHHHHHHHcCCCCCcEEecceeEecCCeeeeccCCCCCcCCCCHHHHHHH
Q 029504 87 PRLSPGIDELVKKLKANNKNVYLISGGFRHMINPIASVLGIPPENIFANQLLFKSSGEFLGFDANEPTSRSGGKAAAVQQ 166 (192)
Q Consensus 87 ~~~~~~~~e~l~~l~~~g~~~~IvS~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~K~~~l~~ 166 (192)
..++||+.++|+.|+++|++++|+|++....++.+++.+++. .+|......+ ..+. ...++..+..
T Consensus 100 ~~~~~g~~e~L~~Lk~~g~~l~ivTn~~~~~~~~~l~~~~i~--~~f~~i~~~d--------~~~~----~Kp~p~~~~~ 165 (272)
T PRK13223 100 TVVYPGVRDTLKWLKKQGVEMALITNKPERFVAPLLDQMKIG--RYFRWIIGGD--------TLPQ----KKPDPAALLF 165 (272)
T ss_pred CccCCCHHHHHHHHHHCCCeEEEEECCcHHHHHHHHHHcCcH--hhCeEEEecC--------CCCC----CCCCcHHHHH
Confidence 458999999999999999999999999999999999999987 6665432111 1111 1235678888
Q ss_pred HHHHcCC--ceEEEEeCCccchhhhcc
Q 029504 167 IRKAHAY--KVLAMIGDGATDLEVSIF 191 (192)
Q Consensus 167 ~~~~~g~--~~~~~iGDs~~Di~~a~~ 191 (192)
+++++|+ ++|++|||+.+|+++|+-
T Consensus 166 ~~~~~g~~~~~~l~IGD~~~Di~aA~~ 192 (272)
T PRK13223 166 VMKMAGVPPSQSLFVGDSRSDVLAAKA 192 (272)
T ss_pred HHHHhCCChhHEEEECCCHHHHHHHHH
Confidence 9988887 899999999999999863
No 38
>PRK13222 phosphoglycolate phosphatase; Provisional
Probab=99.66 E-value=4.8e-15 Score=112.43 Aligned_cols=91 Identities=19% Similarity=0.280 Sum_probs=72.9
Q ss_pred CCCChhHHHHHHHHHHCCCcEEEEcCCcHHhHHHHHHHcCCCCCcEEecceeEecCCeeeeccCCCCCcCCCCHHHHHHH
Q 029504 87 PRLSPGIDELVKKLKANNKNVYLISGGFRHMINPIASVLGIPPENIFANQLLFKSSGEFLGFDANEPTSRSGGKAAAVQQ 166 (192)
Q Consensus 87 ~~~~~~~~e~l~~l~~~g~~~~IvS~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~K~~~l~~ 166 (192)
..+.||+.++++.+++.|++++|+|++....+...++.+|+. .+|...+.. ...... ..++..+..
T Consensus 92 ~~~~~g~~~~l~~l~~~g~~~~i~S~~~~~~~~~~l~~~~l~--~~f~~~~~~--------~~~~~~----kp~~~~~~~ 157 (226)
T PRK13222 92 SRLYPGVKETLAALKAAGYPLAVVTNKPTPFVAPLLEALGIA--DYFSVVIGG--------DSLPNK----KPDPAPLLL 157 (226)
T ss_pred CccCCCHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHcCCc--cCccEEEcC--------CCCCCC----CcChHHHHH
Confidence 579999999999999999999999999999999999999987 555532211 111111 124678889
Q ss_pred HHHHcCC--ceEEEEeCCccchhhhcc
Q 029504 167 IRKAHAY--KVLAMIGDGATDLEVSIF 191 (192)
Q Consensus 167 ~~~~~g~--~~~~~iGDs~~Di~~a~~ 191 (192)
+++++++ ++|++|||+.+|+++|+.
T Consensus 158 ~~~~~~~~~~~~i~igD~~~Di~~a~~ 184 (226)
T PRK13222 158 ACEKLGLDPEEMLFVGDSRNDIQAARA 184 (226)
T ss_pred HHHHcCCChhheEEECCCHHHHHHHHH
Confidence 9999887 889999999999999874
No 39
>PRK06698 bifunctional 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase/phosphatase; Validated
Probab=99.66 E-value=2e-15 Score=125.94 Aligned_cols=90 Identities=22% Similarity=0.347 Sum_probs=73.3
Q ss_pred CCCChhHHHHHHHHHHCCCcEEEEcCCcHHhHHHHHHHcCCCCCcEEecceeEecCCeeeeccCCCCCcCCCCHHHHHHH
Q 029504 87 PRLSPGIDELVKKLKANNKNVYLISGGFRHMINPIASVLGIPPENIFANQLLFKSSGEFLGFDANEPTSRSGGKAAAVQQ 166 (192)
Q Consensus 87 ~~~~~~~~e~l~~l~~~g~~~~IvS~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~K~~~l~~ 166 (192)
..++||+.++|++|+++|++++|+|++....++..++.+|+. .+|...+..+ ... . .+|+..+..
T Consensus 329 ~~l~pG~~e~L~~Lk~~g~~l~IvS~~~~~~~~~~l~~~~l~--~~f~~i~~~d--------~v~-~----~~kP~~~~~ 393 (459)
T PRK06698 329 GALYPNVKEIFTYIKENNCSIYIASNGLTEYLRAIVSYYDLD--QWVTETFSIE--------QIN-S----LNKSDLVKS 393 (459)
T ss_pred CCcCCCHHHHHHHHHHCCCeEEEEeCCchHHHHHHHHHCCcH--hhcceeEecC--------CCC-C----CCCcHHHHH
Confidence 468999999999999999999999999999999999999998 7777654222 110 0 124467777
Q ss_pred HHHHcCCceEEEEeCCccchhhhcc
Q 029504 167 IRKAHAYKVLAMIGDGATDLEVSIF 191 (192)
Q Consensus 167 ~~~~~g~~~~~~iGDs~~Di~~a~~ 191 (192)
.+++++.++|++|||+.+|+.+|+.
T Consensus 394 al~~l~~~~~v~VGDs~~Di~aAk~ 418 (459)
T PRK06698 394 ILNKYDIKEAAVVGDRLSDINAAKD 418 (459)
T ss_pred HHHhcCcceEEEEeCCHHHHHHHHH
Confidence 7777778899999999999999874
No 40
>PRK13478 phosphonoacetaldehyde hydrolase; Provisional
Probab=99.64 E-value=2.9e-15 Score=116.70 Aligned_cols=92 Identities=12% Similarity=0.116 Sum_probs=70.3
Q ss_pred CCCChhHHHHHHHHHHCCCcEEEEcCCcHHhHHHHHHHcCCCCCcEEecceeEecCCeeeeccCCCCCcCCCCHHHHHHH
Q 029504 87 PRLSPGIDELVKKLKANNKNVYLISGGFRHMINPIASVLGIPPENIFANQLLFKSSGEFLGFDANEPTSRSGGKAAAVQQ 166 (192)
Q Consensus 87 ~~~~~~~~e~l~~l~~~g~~~~IvS~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~K~~~l~~ 166 (192)
..++||+.++|+.|+++|++++|+|++....++.+++.+++. .++...+ +. .......+ .++..+..
T Consensus 100 ~~~~pg~~elL~~L~~~g~~l~I~T~~~~~~~~~~l~~~~l~--~~~~d~i-~~------~~~~~~~K----P~p~~~~~ 166 (267)
T PRK13478 100 ATPIPGVLEVIAALRARGIKIGSTTGYTREMMDVVVPLAAAQ--GYRPDHV-VT------TDDVPAGR----PYPWMALK 166 (267)
T ss_pred CCCCCCHHHHHHHHHHCCCEEEEEcCCcHHHHHHHHHHHhhc--CCCceEE-Ec------CCcCCCCC----CChHHHHH
Confidence 468999999999999999999999999999999999988876 4432111 11 11111111 24577888
Q ss_pred HHHHcCC---ceEEEEeCCccchhhhcc
Q 029504 167 IRKAHAY---KVLAMIGDGATDLEVSIF 191 (192)
Q Consensus 167 ~~~~~g~---~~~~~iGDs~~Di~~a~~ 191 (192)
.++++|+ ++|++||||.+|+.+|+-
T Consensus 167 a~~~l~~~~~~e~l~IGDs~~Di~aA~~ 194 (267)
T PRK13478 167 NAIELGVYDVAACVKVDDTVPGIEEGLN 194 (267)
T ss_pred HHHHcCCCCCcceEEEcCcHHHHHHHHH
Confidence 8888886 579999999999999874
No 41
>TIGR01548 HAD-SF-IA-hyp1 haloacid dehalogenase superfamily, subfamily IA hydrolase, TIGR01548. All but the Halobacterium sequence currently found are annotated as "Imidazoleglycerol-phosphate dehydratase", however, the source of the annotation could not be traced and significant homology could not be found between any of these sequences and known IGPD's.
Probab=99.64 E-value=7.4e-15 Score=109.45 Aligned_cols=88 Identities=17% Similarity=0.186 Sum_probs=70.0
Q ss_pred CChhHHHHHHHHHHCCCcEEEEcCCcHHhHHHHHHHcCCCCCcEEecceeEecCCeeeeccCCCCCcCCCCHHHHHHHHH
Q 029504 89 LSPGIDELVKKLKANNKNVYLISGGFRHMINPIASVLGIPPENIFANQLLFKSSGEFLGFDANEPTSRSGGKAAAVQQIR 168 (192)
Q Consensus 89 ~~~~~~e~l~~l~~~g~~~~IvS~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~K~~~l~~~~ 168 (192)
+.++..++|+.|++.|++++|+|++....++.+++.+|+. .+|...+..++ ... + .++..+..++
T Consensus 107 ~~~~~~~~L~~l~~~g~~~~i~T~~~~~~~~~~l~~~gl~--~~f~~~~~~~~--------~~~-K----P~p~~~~~~~ 171 (197)
T TIGR01548 107 TLLTPKGLLRELHRAPKGMAVVTGRPRKDAAKFLTTHGLE--ILFPVQIWMED--------CPP-K----PNPEPLILAA 171 (197)
T ss_pred cccCHHHHHHHHHHcCCcEEEECCCCHHHHHHHHHHcCch--hhCCEEEeecC--------CCC-C----cCHHHHHHHH
Confidence 4445699999999999999999999999999999999998 77764443221 111 1 2457777888
Q ss_pred HHcCC--ceEEEEeCCccchhhhcc
Q 029504 169 KAHAY--KVLAMIGDGATDLEVSIF 191 (192)
Q Consensus 169 ~~~g~--~~~~~iGDs~~Di~~a~~ 191 (192)
+++|+ ++|++|||+.+|+.+|+.
T Consensus 172 ~~~~~~~~~~i~vGD~~~Di~aA~~ 196 (197)
T TIGR01548 172 KALGVEACHAAMVGDTVDDIITGRK 196 (197)
T ss_pred HHhCcCcccEEEEeCCHHHHHHHHh
Confidence 88887 789999999999999974
No 42
>TIGR01422 phosphonatase phosphonoacetaldehyde hydrolase. This enzyme is a member of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases (pfam00702), and contains a modified version of the conserved catalytic motifs of that superfamily: the first motif is usually DxDx(T/V), here it is DxAxT, and in the third motif the normal conserved lysine is instead an arginine. Additionally, the enzyme contains a unique conserved catalytic lysine (B. cereus pos. 53) which is involved in the binding and activation of the substrate through the formation of a Schiff base. The substrate of this enzyme is the product of 2-aminoethylphosphonate (AEP) transaminase, phosphonoacetaldehyde. This degradation pathway for AEP may be related to its toxic properties which are utilized by microorganisms as a chemical warfare agent.
Probab=99.64 E-value=2.2e-15 Score=116.47 Aligned_cols=91 Identities=15% Similarity=0.130 Sum_probs=70.9
Q ss_pred CCCChhHHHHHHHHHHCCCcEEEEcCCcHHhHHHHHHHcCCCCCcEE-ecceeEecCCeeeeccCCCCCcCCCCHHHHHH
Q 029504 87 PRLSPGIDELVKKLKANNKNVYLISGGFRHMINPIASVLGIPPENIF-ANQLLFKSSGEFLGFDANEPTSRSGGKAAAVQ 165 (192)
Q Consensus 87 ~~~~~~~~e~l~~l~~~g~~~~IvS~~~~~~~~~~l~~~g~~~~~~~-~~~~~~~~~g~~~~~~~~~~~~~~~~K~~~l~ 165 (192)
..++||+.++|++|+++|++++|+|++....++.+++.+|+. .+| ...+ . .......+ .++..+.
T Consensus 98 ~~~~pg~~e~L~~L~~~g~~l~IvT~~~~~~~~~~l~~~gl~--~~f~d~ii--~------~~~~~~~K----P~p~~~~ 163 (253)
T TIGR01422 98 SSPIPGVIEVIAYLRARGIKIGSTTGYTREMMDVVAPEAALQ--GYRPDYNV--T------TDDVPAGR----PAPWMAL 163 (253)
T ss_pred CccCCCHHHHHHHHHHCCCeEEEECCCcHHHHHHHHHHHHhc--CCCCceEE--c------cccCCCCC----CCHHHHH
Confidence 578999999999999999999999999999999999999987 554 3222 1 11111111 2457788
Q ss_pred HHHHHcCC---ceEEEEeCCccchhhhcc
Q 029504 166 QIRKAHAY---KVLAMIGDGATDLEVSIF 191 (192)
Q Consensus 166 ~~~~~~g~---~~~~~iGDs~~Di~~a~~ 191 (192)
..++++|+ ++|++||||.+|+.+|+-
T Consensus 164 ~a~~~l~~~~~~~~l~IGDs~~Di~aA~~ 192 (253)
T TIGR01422 164 KNAIELGVYDVAACVKVGDTVPDIEEGRN 192 (253)
T ss_pred HHHHHcCCCCchheEEECCcHHHHHHHHH
Confidence 88888885 579999999999999874
No 43
>TIGR01990 bPGM beta-phosphoglucomutase. The enzyme from L. lactis has been extensively characterized including a remarkable crystal structure which traps the pentacoordinate transition state.
Probab=99.64 E-value=8.6e-15 Score=107.75 Aligned_cols=89 Identities=18% Similarity=0.193 Sum_probs=69.0
Q ss_pred CCCChhHHHHHHHHHHCCCcEEEEcCCcHHhHHHHHHHcCCCCCcEEecceeEecCCeeeeccCCCCCcCCCCHHHHHHH
Q 029504 87 PRLSPGIDELVKKLKANNKNVYLISGGFRHMINPIASVLGIPPENIFANQLLFKSSGEFLGFDANEPTSRSGGKAAAVQQ 166 (192)
Q Consensus 87 ~~~~~~~~e~l~~l~~~g~~~~IvS~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~K~~~l~~ 166 (192)
..++||+.++|++|+++|++++|+|++.. ....++.+|+. .+|...+..+ ...... .+++.+..
T Consensus 86 ~~~~pg~~~~L~~L~~~g~~~~i~s~~~~--~~~~l~~~~l~--~~f~~~~~~~--------~~~~~k----p~p~~~~~ 149 (185)
T TIGR01990 86 ADVLPGIKNLLDDLKKNNIKIALASASKN--APTVLEKLGLI--DYFDAIVDPA--------EIKKGK----PDPEIFLA 149 (185)
T ss_pred cccCccHHHHHHHHHHCCCeEEEEeCCcc--HHHHHHhcCcH--hhCcEEEehh--------hcCCCC----CChHHHHH
Confidence 36899999999999999999999998753 46788999987 6665433221 111121 35688888
Q ss_pred HHHHcCC--ceEEEEeCCccchhhhcc
Q 029504 167 IRKAHAY--KVLAMIGDGATDLEVSIF 191 (192)
Q Consensus 167 ~~~~~g~--~~~~~iGDs~~Di~~a~~ 191 (192)
.++++++ ++|++|||+.+|+.+|+.
T Consensus 150 ~~~~~~~~~~~~v~vgD~~~di~aA~~ 176 (185)
T TIGR01990 150 AAEGLGVSPSECIGIEDAQAGIEAIKA 176 (185)
T ss_pred HHHHcCCCHHHeEEEecCHHHHHHHHH
Confidence 9988887 889999999999999874
No 44
>COG0637 Predicted phosphatase/phosphohexomutase [General function prediction only]
Probab=99.63 E-value=9.3e-15 Score=110.80 Aligned_cols=91 Identities=15% Similarity=0.177 Sum_probs=74.5
Q ss_pred CCCChhHHHHHHHHHHCCCcEEEEcCCcHHhHHHHHHHcCCCCCcEEecceeEecCCeeeeccCCCCCcCCCCHHHHHHH
Q 029504 87 PRLSPGIDELVKKLKANNKNVYLISGGFRHMINPIASVLGIPPENIFANQLLFKSSGEFLGFDANEPTSRSGGKAAAVQQ 166 (192)
Q Consensus 87 ~~~~~~~~e~l~~l~~~g~~~~IvS~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~K~~~l~~ 166 (192)
..+.||+.++|+.|+++|++++++|++.+..++..++.+|+. ++|...+.- .+....+|.| .....
T Consensus 85 ~~~~pGv~~~l~~L~~~~i~~avaS~s~~~~~~~~L~~~gl~--~~f~~~v~~--------~dv~~~KP~P----d~yL~ 150 (221)
T COG0637 85 LKPIPGVVELLEQLKARGIPLAVASSSPRRAAERVLARLGLL--DYFDVIVTA--------DDVARGKPAP----DIYLL 150 (221)
T ss_pred CCCCccHHHHHHHHHhcCCcEEEecCChHHHHHHHHHHccCh--hhcchhccH--------HHHhcCCCCC----HHHHH
Confidence 469999999999999999999999999999999999999998 778765522 1222233333 66777
Q ss_pred HHHHcCC--ceEEEEeCCccchhhhcc
Q 029504 167 IRKAHAY--KVLAMIGDGATDLEVSIF 191 (192)
Q Consensus 167 ~~~~~g~--~~~~~iGDs~~Di~~a~~ 191 (192)
.++++|+ ++|++|+||.+++.+++.
T Consensus 151 Aa~~Lgv~P~~CvviEDs~~Gi~Aa~a 177 (221)
T COG0637 151 AAERLGVDPEECVVVEDSPAGIQAAKA 177 (221)
T ss_pred HHHHcCCChHHeEEEecchhHHHHHHH
Confidence 7778777 899999999999999874
No 45
>PLN02940 riboflavin kinase
Probab=99.63 E-value=9.3e-15 Score=119.10 Aligned_cols=91 Identities=18% Similarity=0.129 Sum_probs=72.7
Q ss_pred CCCChhHHHHHHHHHHCCCcEEEEcCCcHHhHHHHHH-HcCCCCCcEEecceeEecCCeeeeccCCCCCcCCCCHHHHHH
Q 029504 87 PRLSPGIDELVKKLKANNKNVYLISGGFRHMINPIAS-VLGIPPENIFANQLLFKSSGEFLGFDANEPTSRSGGKAAAVQ 165 (192)
Q Consensus 87 ~~~~~~~~e~l~~l~~~g~~~~IvS~~~~~~~~~~l~-~~g~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~K~~~l~ 165 (192)
..++||+.++|+.|+++|++++|+|++....++..++ .+|+. .+|+..+..+ .....+ .+++.+.
T Consensus 92 ~~l~pGv~elL~~Lk~~g~~l~IvTn~~~~~~~~~l~~~~gl~--~~Fd~ii~~d--------~v~~~K----P~p~~~~ 157 (382)
T PLN02940 92 IKALPGANRLIKHLKSHGVPMALASNSPRANIEAKISCHQGWK--ESFSVIVGGD--------EVEKGK----PSPDIFL 157 (382)
T ss_pred CCCCcCHHHHHHHHHHCCCcEEEEeCCcHHHHHHHHHhccChH--hhCCEEEehh--------hcCCCC----CCHHHHH
Confidence 4689999999999999999999999999999988887 78887 6666443221 111122 2458899
Q ss_pred HHHHHcCC--ceEEEEeCCccchhhhcc
Q 029504 166 QIRKAHAY--KVLAMIGDGATDLEVSIF 191 (192)
Q Consensus 166 ~~~~~~g~--~~~~~iGDs~~Di~~a~~ 191 (192)
..++++|+ ++|++||||.+|+++|+.
T Consensus 158 ~a~~~lgv~p~~~l~VGDs~~Di~aA~~ 185 (382)
T PLN02940 158 EAAKRLNVEPSNCLVIEDSLPGVMAGKA 185 (382)
T ss_pred HHHHHcCCChhHEEEEeCCHHHHHHHHH
Confidence 99999987 889999999999999874
No 46
>TIGR02254 YjjG/YfnB HAD superfamily (subfamily IA) hydrolase, TIGR02254. This family is a member of the haloacid dehalogenase (HAD) superfamily of hydrolases which are characterized by three conserved sequence motifs. By virtue of an alpha helical domain in-between the first and second conserved motif, this family is a member of subfamily IA (TIGR01549). Most likely, these enzymes are phosphatases.
Probab=99.63 E-value=8e-15 Score=111.04 Aligned_cols=90 Identities=20% Similarity=0.298 Sum_probs=72.1
Q ss_pred CCCChhHHHHHHHHHHCCCcEEEEcCCcHHhHHHHHHHcCCCCCcEEecceeEecCCeeeeccCCCCCcCCCCHHHHHHH
Q 029504 87 PRLSPGIDELVKKLKANNKNVYLISGGFRHMINPIASVLGIPPENIFANQLLFKSSGEFLGFDANEPTSRSGGKAAAVQQ 166 (192)
Q Consensus 87 ~~~~~~~~e~l~~l~~~g~~~~IvS~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~K~~~l~~ 166 (192)
..++||+.++|++++++ ++++|+|++....++..++.+|+. .+|+..+..+ .....+ .++..+..
T Consensus 96 ~~~~~g~~~~L~~l~~~-~~~~i~Sn~~~~~~~~~l~~~~l~--~~fd~i~~~~--------~~~~~K----P~~~~~~~ 160 (224)
T TIGR02254 96 HQLLPGAFELMENLQQK-FRLYIVTNGVRETQYKRLRKSGLF--PFFDDIFVSE--------DAGIQK----PDKEIFNY 160 (224)
T ss_pred CeeCccHHHHHHHHHhc-CcEEEEeCCchHHHHHHHHHCCcH--hhcCEEEEcC--------ccCCCC----CCHHHHHH
Confidence 46899999999999999 999999999999999999999997 6676544221 111111 24577888
Q ss_pred HHHHc-CC--ceEEEEeCCc-cchhhhcc
Q 029504 167 IRKAH-AY--KVLAMIGDGA-TDLEVSIF 191 (192)
Q Consensus 167 ~~~~~-g~--~~~~~iGDs~-~Di~~a~~ 191 (192)
.++++ |+ ++|++|||+. +|+.+|+.
T Consensus 161 ~~~~~~~~~~~~~v~igD~~~~di~~A~~ 189 (224)
T TIGR02254 161 ALERMPKFSKEEVLMIGDSLTADIKGGQN 189 (224)
T ss_pred HHHHhcCCCchheEEECCCcHHHHHHHHH
Confidence 88888 86 8899999998 89999874
No 47
>PRK10563 6-phosphogluconate phosphatase; Provisional
Probab=99.62 E-value=1.8e-14 Score=109.10 Aligned_cols=89 Identities=15% Similarity=0.223 Sum_probs=70.1
Q ss_pred CCCChhHHHHHHHHHHCCCcEEEEcCCcHHhHHHHHHHcCCCCCcEEecceeEecCCeeeeccCCCCCcCCCCHHHHHHH
Q 029504 87 PRLSPGIDELVKKLKANNKNVYLISGGFRHMINPIASVLGIPPENIFANQLLFKSSGEFLGFDANEPTSRSGGKAAAVQQ 166 (192)
Q Consensus 87 ~~~~~~~~e~l~~l~~~g~~~~IvS~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~K~~~l~~ 166 (192)
..++||+.++|+.| +++++|+|++....++..++.+|+. .+|...+.. +......+ .+++.+..
T Consensus 87 ~~~~~gv~~~L~~L---~~~~~ivTn~~~~~~~~~l~~~~l~--~~F~~~v~~-------~~~~~~~K----P~p~~~~~ 150 (221)
T PRK10563 87 LEPIAGANALLESI---TVPMCVVSNGPVSKMQHSLGKTGML--HYFPDKLFS-------GYDIQRWK----PDPALMFH 150 (221)
T ss_pred CCcCCCHHHHHHHc---CCCEEEEeCCcHHHHHHHHHhcChH--HhCcceEee-------HHhcCCCC----CChHHHHH
Confidence 57899999999998 4899999999999999999999997 667533221 11122222 25688999
Q ss_pred HHHHcCC--ceEEEEeCCccchhhhcc
Q 029504 167 IRKAHAY--KVLAMIGDGATDLEVSIF 191 (192)
Q Consensus 167 ~~~~~g~--~~~~~iGDs~~Di~~a~~ 191 (192)
+++++|+ ++|++|||+.+|+++|+-
T Consensus 151 a~~~~~~~p~~~l~igDs~~di~aA~~ 177 (221)
T PRK10563 151 AAEAMNVNVENCILVDDSSAGAQSGIA 177 (221)
T ss_pred HHHHcCCCHHHeEEEeCcHhhHHHHHH
Confidence 9999997 889999999999999864
No 48
>PF12710 HAD: haloacid dehalogenase-like hydrolase; PDB: 3P96_A 3N28_A 3FVV_A 1RKU_A 1RKV_A 1Y8A_A 2FEA_B 3KD3_B.
Probab=99.62 E-value=3.1e-15 Score=110.62 Aligned_cols=96 Identities=33% Similarity=0.517 Sum_probs=73.6
Q ss_pred hhHHHHHHHHHHCCCcEEEEcCCcHHhHHHHHHHcCCCCCcEEecceeEecC-CeeeeccCCCCCcCCCCHHHHHHHH--
Q 029504 91 PGIDELVKKLKANNKNVYLISGGFRHMINPIASVLGIPPENIFANQLLFKSS-GEFLGFDANEPTSRSGGKAAAVQQI-- 167 (192)
Q Consensus 91 ~~~~e~l~~l~~~g~~~~IvS~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~-g~~~~~~~~~~~~~~~~K~~~l~~~-- 167 (192)
|++.++|+.++++|++++|+|+++..+++.+++.+|++...++++.+ .+++ +...+...+.. .+ +|...++.+
T Consensus 92 ~~~~e~i~~~~~~~~~v~IvS~~~~~~i~~~~~~~~i~~~~v~~~~~-~~~~~~~~~~~~~~~~--~~-~K~~~l~~~~~ 167 (192)
T PF12710_consen 92 PDAMELIRELKDNGIKVVIVSGSPDEIIEPIAERLGIDDDNVIGNEL-FDNGGGIFTGRITGSN--CG-GKAEALKELYI 167 (192)
T ss_dssp TTHHHHHHHHHHTTSEEEEEEEEEHHHHHHHHHHTTSSEGGEEEEEE-ECTTCCEEEEEEEEEE--ES-HHHHHHHHHHH
T ss_pred hhHHHHHHHHHHCCCEEEEECCCcHHHHHHHHHHcCCCceEEEEEee-eecccceeeeeECCCC--CC-cHHHHHHHHHH
Confidence 66669999999999999999999999999999999999555888888 5433 22333222110 01 499999999
Q ss_pred -HH-HcCCceEEEEeCCccchhhhc
Q 029504 168 -RK-AHAYKVLAMIGDGATDLEVSI 190 (192)
Q Consensus 168 -~~-~~g~~~~~~iGDs~~Di~~a~ 190 (192)
.. ..+...+++||||.||++|+|
T Consensus 168 ~~~~~~~~~~~~~iGDs~~D~~~lr 192 (192)
T PF12710_consen 168 RDEEDIDPDRVIAIGDSINDLPMLR 192 (192)
T ss_dssp HHHHTHTCCEEEEEESSGGGHHHHH
T ss_pred HhhcCCCCCeEEEEECCHHHHHHhC
Confidence 33 233479999999999999986
No 49
>PRK10725 fructose-1-P/6-phosphogluconate phosphatase; Provisional
Probab=99.62 E-value=2e-14 Score=106.16 Aligned_cols=89 Identities=11% Similarity=0.116 Sum_probs=69.9
Q ss_pred CCCChhHHHHHHHHHHCCCcEEEEcCCcHHhHHHHHHHcCCCCCcEEecceeEecCCeeeeccCCCCCcCCCCHHHHHHH
Q 029504 87 PRLSPGIDELVKKLKANNKNVYLISGGFRHMINPIASVLGIPPENIFANQLLFKSSGEFLGFDANEPTSRSGGKAAAVQQ 166 (192)
Q Consensus 87 ~~~~~~~~e~l~~l~~~g~~~~IvS~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~K~~~l~~ 166 (192)
..+.|+ .++|..+++. ++++|+|++....++..++++|+. .+|+..+..+ .....+ .++..+..
T Consensus 87 ~~~~~~-~e~L~~L~~~-~~l~I~T~~~~~~~~~~l~~~~l~--~~fd~i~~~~--------~~~~~K----P~p~~~~~ 150 (188)
T PRK10725 87 VEPLPL-IEVVKAWHGR-RPMAVGTGSESAIAEALLAHLGLR--RYFDAVVAAD--------DVQHHK----PAPDTFLR 150 (188)
T ss_pred CCCccH-HHHHHHHHhC-CCEEEEcCCchHHHHHHHHhCCcH--hHceEEEehh--------hccCCC----CChHHHHH
Confidence 356776 6899999876 899999999999999999999998 6776544222 111111 35588899
Q ss_pred HHHHcCC--ceEEEEeCCccchhhhcc
Q 029504 167 IRKAHAY--KVLAMIGDGATDLEVSIF 191 (192)
Q Consensus 167 ~~~~~g~--~~~~~iGDs~~Di~~a~~ 191 (192)
..+++|+ ++|++|||+.+|+++|+.
T Consensus 151 ~~~~~~~~~~~~l~igDs~~di~aA~~ 177 (188)
T PRK10725 151 CAQLMGVQPTQCVVFEDADFGIQAARA 177 (188)
T ss_pred HHHHcCCCHHHeEEEeccHhhHHHHHH
Confidence 9999987 889999999999999874
No 50
>PRK09456 ?-D-glucose-1-phosphatase; Provisional
Probab=99.60 E-value=2.4e-14 Score=106.91 Aligned_cols=154 Identities=16% Similarity=0.088 Sum_probs=97.6
Q ss_pred CcEEecCCCcccchhHh-hHHHHHHH---H-------------HHHHHHHhCCCccHHHHHHHHHhhcCC--CHHHHHHH
Q 029504 21 LPGCLASLFIENNSCLI-FLDGLTEF---I-------------FVFFARAMGGSVPFEEALAARLSLFKP--SLSQVQDF 81 (192)
Q Consensus 21 k~iifD~~~~DGTL~~~-~~~~~~~~---~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~ 81 (192)
.+|+|| +||||++. ....+... . ...+.+...|.++..+........... ..+.+.+.
T Consensus 1 ~~viFD---ldgvL~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (199)
T PRK09456 1 MLYIFD---LGNVIVDIDFNRVLGVWSDLSRVPLATLKKRFTMGEAFHQHERGEISDEAFAEALCHEMALSLSYEQFAHG 77 (199)
T ss_pred CEEEEe---CCCccccCcHHHHHHHHHHhcCCCHHHHHHHHhcCcHHHHHhcCCCCHHHHHHHHHHHhCCCCCHHHHHHH
Confidence 379999 99999985 21111111 1 122344555556665555544443332 23333333
Q ss_pred HHhCCCCCChhHHHHHHHHHHCCCcEEEEcCCcHHhHHHHHHH-cCCCCCcEEecceeEecCCeeeeccCCCCCcCCCCH
Q 029504 82 LEKRPPRLSPGIDELVKKLKANNKNVYLISGGFRHMINPIASV-LGIPPENIFANQLLFKSSGEFLGFDANEPTSRSGGK 160 (192)
Q Consensus 82 ~~~~~~~~~~~~~e~l~~l~~~g~~~~IvS~~~~~~~~~~l~~-~g~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~K 160 (192)
+......++||+.++|+.++++|++++|+|++........+.. .++. .+|...+..+ ..+..+ .+
T Consensus 78 ~~~~~~~~~~g~~e~L~~l~~~g~~~~i~Sn~~~~~~~~~~~~~~~l~--~~fd~v~~s~--------~~~~~K----P~ 143 (199)
T PRK09456 78 WQAVFVALRPEVIAIMHKLREQGHRVVVLSNTNRLHTTFWPEEYPEVR--AAADHIYLSQ--------DLGMRK----PE 143 (199)
T ss_pred HHHHHhccCHHHHHHHHHHHhCCCcEEEEcCCchhhHHHHHhhchhHH--HhcCEEEEec--------ccCCCC----CC
Confidence 3332235899999999999999999999999988776665543 3454 4444332221 222222 24
Q ss_pred HHHHHHHHHHcCC--ceEEEEeCCccchhhhcc
Q 029504 161 AAAVQQIRKAHAY--KVLAMIGDGATDLEVSIF 191 (192)
Q Consensus 161 ~~~l~~~~~~~g~--~~~~~iGDs~~Di~~a~~ 191 (192)
+..+..+++++|+ ++|++|||+..|+.+|+.
T Consensus 144 p~~~~~~~~~~~~~p~~~l~vgD~~~di~aA~~ 176 (199)
T PRK09456 144 ARIYQHVLQAEGFSAADAVFFDDNADNIEAANA 176 (199)
T ss_pred HHHHHHHHHHcCCChhHeEEeCCCHHHHHHHHH
Confidence 6888889999987 899999999999999864
No 51
>PF13419 HAD_2: Haloacid dehalogenase-like hydrolase; PDB: 2FI1_A 2I6X_A 3SD7_A 4F71_A 4DFD_B 4F72_B 4DCC_A 3DDH_A 3KZX_A 2B0C_A ....
Probab=99.59 E-value=9.5e-15 Score=105.88 Aligned_cols=93 Identities=22% Similarity=0.352 Sum_probs=74.7
Q ss_pred CCCCCChhHHHHHHHHHHCCCcEEEEcCCcHHhHHHHHHHcCCCCCcEEecceeEecCCeeeeccCCCCCcCCCCHHHHH
Q 029504 85 RPPRLSPGIDELVKKLKANNKNVYLISGGFRHMINPIASVLGIPPENIFANQLLFKSSGEFLGFDANEPTSRSGGKAAAV 164 (192)
Q Consensus 85 ~~~~~~~~~~e~l~~l~~~g~~~~IvS~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~K~~~l 164 (192)
....++||+.++|+.|+++|++++++|++....+...++.+|+. .+|...+..+ ..+.. ..+...+
T Consensus 74 ~~~~~~~~~~~~L~~l~~~~~~~~i~Sn~~~~~~~~~l~~~~~~--~~f~~i~~~~--------~~~~~----Kp~~~~~ 139 (176)
T PF13419_consen 74 SKLQPYPGVRELLERLKAKGIPLVIVSNGSRERIERVLERLGLD--DYFDEIISSD--------DVGSR----KPDPDAY 139 (176)
T ss_dssp GGEEESTTHHHHHHHHHHTTSEEEEEESSEHHHHHHHHHHTTHG--GGCSEEEEGG--------GSSSS----TTSHHHH
T ss_pred hccchhhhhhhhhhhcccccceeEEeecCCcccccccccccccc--cccccccccc--------hhhhh----hhHHHHH
Confidence 33579999999999999999999999999999999999999987 5555433221 11111 1346889
Q ss_pred HHHHHHcCC--ceEEEEeCCccchhhhcc
Q 029504 165 QQIRKAHAY--KVLAMIGDGATDLEVSIF 191 (192)
Q Consensus 165 ~~~~~~~g~--~~~~~iGDs~~Di~~a~~ 191 (192)
..+++++|+ ++|++|||+..|+.+|+.
T Consensus 140 ~~~~~~~~~~p~~~~~vgD~~~d~~~A~~ 168 (176)
T PF13419_consen 140 RRALEKLGIPPEEILFVGDSPSDVEAAKE 168 (176)
T ss_dssp HHHHHHHTSSGGGEEEEESSHHHHHHHHH
T ss_pred HHHHHHcCCCcceEEEEeCCHHHHHHHHH
Confidence 999999887 899999999999999874
No 52
>TIGR02252 DREG-2 REG-2-like, HAD superfamily (subfamily IA) hydrolase. Most likely, these sequences, like the vast majority of HAD sequences, represent phosphatase enzymes.
Probab=99.58 E-value=4.4e-14 Score=105.61 Aligned_cols=90 Identities=16% Similarity=0.126 Sum_probs=69.6
Q ss_pred CCCChhHHHHHHHHHHCCCcEEEEcCCcHHhHHHHHHHcCCCCCcEEecceeEecCCeeeeccCCCCCcCCCCHHHHHHH
Q 029504 87 PRLSPGIDELVKKLKANNKNVYLISGGFRHMINPIASVLGIPPENIFANQLLFKSSGEFLGFDANEPTSRSGGKAAAVQQ 166 (192)
Q Consensus 87 ~~~~~~~~e~l~~l~~~g~~~~IvS~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~K~~~l~~ 166 (192)
..++||+.++|+.|+++|++++|+||+... ++..++.+|+. .+|...+..+. .+..+| .+..+..
T Consensus 104 ~~~~~g~~~~l~~L~~~g~~~~i~Sn~~~~-~~~~l~~~~l~--~~fd~i~~s~~--------~~~~KP----~~~~~~~ 168 (203)
T TIGR02252 104 WQVYPDAIKLLKDLRERGLILGVISNFDSR-LRGLLEALGLL--EYFDFVVTSYE--------VGAEKP----DPKIFQE 168 (203)
T ss_pred ceeCcCHHHHHHHHHHCCCEEEEEeCCchh-HHHHHHHCCcH--HhcceEEeecc--------cCCCCC----CHHHHHH
Confidence 368999999999999999999999998765 47788889986 66665443221 111222 3477888
Q ss_pred HHHHcCC--ceEEEEeCCc-cchhhhcc
Q 029504 167 IRKAHAY--KVLAMIGDGA-TDLEVSIF 191 (192)
Q Consensus 167 ~~~~~g~--~~~~~iGDs~-~Di~~a~~ 191 (192)
+++++|+ ++|++|||+. +|+.+|+.
T Consensus 169 ~~~~~~~~~~~~~~IgD~~~~Di~~A~~ 196 (203)
T TIGR02252 169 ALERAGISPEEALHIGDSLRNDYQGARA 196 (203)
T ss_pred HHHHcCCChhHEEEECCCchHHHHHHHH
Confidence 8888887 8999999997 89999874
No 53
>PLN02779 haloacid dehalogenase-like hydrolase family protein
Probab=99.57 E-value=9e-14 Score=109.32 Aligned_cols=93 Identities=16% Similarity=0.139 Sum_probs=68.9
Q ss_pred CCCChhHHHHHHHHHHCCCcEEEEcCCcHHhHHHHHHHcCCCCCcEEecceeEecCCeeeeccCCCCCcCCCCHHHHHHH
Q 029504 87 PRLSPGIDELVKKLKANNKNVYLISGGFRHMINPIASVLGIPPENIFANQLLFKSSGEFLGFDANEPTSRSGGKAAAVQQ 166 (192)
Q Consensus 87 ~~~~~~~~e~l~~l~~~g~~~~IvS~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~K~~~l~~ 166 (192)
..++||+.++|+.|+++|++++|+|++....+..+++.++.. .++...-.+ .+.+....+ .++..+..
T Consensus 143 ~~l~pGv~elL~~L~~~g~~l~IvTn~~~~~~~~~l~~~~~~--~~~~~~~~v------~~~~~~~~K----P~p~~~~~ 210 (286)
T PLN02779 143 LPLRPGVLRLMDEALAAGIKVAVCSTSNEKAVSKIVNTLLGP--ERAQGLDVF------AGDDVPKKK----PDPDIYNL 210 (286)
T ss_pred CCchhhHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHhccc--cccCceEEE------eccccCCCC----CCHHHHHH
Confidence 368999999999999999999999999999999998876432 222211011 111111222 24578888
Q ss_pred HHHHcCC--ceEEEEeCCccchhhhcc
Q 029504 167 IRKAHAY--KVLAMIGDGATDLEVSIF 191 (192)
Q Consensus 167 ~~~~~g~--~~~~~iGDs~~Di~~a~~ 191 (192)
+++++|+ ++|++|||+.+|+++|+-
T Consensus 211 a~~~~~~~p~~~l~IGDs~~Di~aA~~ 237 (286)
T PLN02779 211 AAETLGVDPSRCVVVEDSVIGLQAAKA 237 (286)
T ss_pred HHHHhCcChHHEEEEeCCHHhHHHHHH
Confidence 8888887 889999999999999874
No 54
>TIGR02247 HAD-1A3-hyp Epoxide hydrolase N-terminal domain-like phosphatase. These appear to be members of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases by general homology and the conservation of all of the recognized catalytic motifs (although the first motif is unusual in the replacement of the more common aspartate with glycine...). The variable domain is found in between motifs 1 and 2, indicating membership in subfamily I and phylogeny and prediction of the alpha helical nature of the variable domain (by PSI-PRED) indicate membership in subfamily IA.
Probab=99.54 E-value=1.1e-13 Score=104.23 Aligned_cols=91 Identities=13% Similarity=0.089 Sum_probs=63.8
Q ss_pred CCCChhHHHHHHHHHHCCCcEEEEcCCcHHh--HHHHHHHcCCCCCcEEecceeEecCCeeeeccCCCCCcCCCCHHHHH
Q 029504 87 PRLSPGIDELVKKLKANNKNVYLISGGFRHM--INPIASVLGIPPENIFANQLLFKSSGEFLGFDANEPTSRSGGKAAAV 164 (192)
Q Consensus 87 ~~~~~~~~e~l~~l~~~g~~~~IvS~~~~~~--~~~~l~~~g~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~K~~~l 164 (192)
..++||+.++|+.|+++|++++|+|++.... ....+...++. .+|...+..+ .....+| .+..+
T Consensus 93 ~~~~~~~~~~L~~L~~~g~~l~i~Sn~~~~~~~~~~~~~~~~l~--~~fd~v~~s~--------~~~~~KP----~p~~~ 158 (211)
T TIGR02247 93 TKLRPSMMAAIKTLRAKGFKTACITNNFPTDHSAEEALLPGDIM--ALFDAVVESC--------LEGLRKP----DPRIY 158 (211)
T ss_pred cccChhHHHHHHHHHHCCCeEEEEeCCCCccchhhhHhhhhhhH--hhCCEEEEee--------ecCCCCC----CHHHH
Confidence 4689999999999999999999999986543 22233344554 4454333211 1111122 34678
Q ss_pred HHHHHHcCC--ceEEEEeCCccchhhhcc
Q 029504 165 QQIRKAHAY--KVLAMIGDGATDLEVSIF 191 (192)
Q Consensus 165 ~~~~~~~g~--~~~~~iGDs~~Di~~a~~ 191 (192)
..+++++|+ ++|++|||+..|+.+|+.
T Consensus 159 ~~~~~~~g~~~~~~l~i~D~~~di~aA~~ 187 (211)
T TIGR02247 159 QLMLERLGVAPEECVFLDDLGSNLKPAAA 187 (211)
T ss_pred HHHHHHcCCCHHHeEEEcCCHHHHHHHHH
Confidence 888888887 889999999999999874
No 55
>TIGR01509 HAD-SF-IA-v3 haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED. HAD subfamilies caused by an overly broad single model.
Probab=99.53 E-value=1.6e-13 Score=100.65 Aligned_cols=90 Identities=17% Similarity=0.269 Sum_probs=69.0
Q ss_pred CCCChhHHHHHHHHHHCCCcEEEEcCCcHHhHHHHHHHcCCCCCcEEecceeEecCCeeeeccCCCCCcCCCCHHHHHHH
Q 029504 87 PRLSPGIDELVKKLKANNKNVYLISGGFRHMINPIASVLGIPPENIFANQLLFKSSGEFLGFDANEPTSRSGGKAAAVQQ 166 (192)
Q Consensus 87 ~~~~~~~~e~l~~l~~~g~~~~IvS~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~K~~~l~~ 166 (192)
..++||+.++|+.|+++|++++|+|++.... .....++|+. .+|...+..+ .....+ ..+..+..
T Consensus 84 ~~~~~g~~~~l~~l~~~g~~~~i~Tn~~~~~-~~~~~~~~l~--~~f~~i~~~~--------~~~~~K----P~~~~~~~ 148 (183)
T TIGR01509 84 LKPLPGVEPLLEALRARGKKLALLTNSPRDH-AVLVQELGLR--DLFDVVIFSG--------DVGRGK----PDPDIYLL 148 (183)
T ss_pred CccCcCHHHHHHHHHHCCCeEEEEeCCchHH-HHHHHhcCCH--HHCCEEEEcC--------CCCCCC----CCHHHHHH
Confidence 4689999999999999999999999999888 6666668886 5555433211 111121 23577888
Q ss_pred HHHHcCC--ceEEEEeCCccchhhhcc
Q 029504 167 IRKAHAY--KVLAMIGDGATDLEVSIF 191 (192)
Q Consensus 167 ~~~~~g~--~~~~~iGDs~~Di~~a~~ 191 (192)
+++++|+ ++|++|||+..|+.+|+.
T Consensus 149 ~~~~~~~~~~~~~~vgD~~~di~aA~~ 175 (183)
T TIGR01509 149 ALKKLGLKPEECLFVDDSPAGIEAAKA 175 (183)
T ss_pred HHHHcCCCcceEEEEcCCHHHHHHHHH
Confidence 8888887 899999999999999874
No 56
>TIGR01670 YrbI-phosphatas 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase, YrbI family. The Methanosarcina sequence is distinctive in that it is linked to an N-terminal cytidylyltransferase domain (pfam02348) and is annotated as acylneuraminate cytidylyltransferase. This may give some clue as the function of these phosphatases. Several eukaryotic sequences scoring between trusted and noise are also closely related to this function such as the CMP-N-acetylneuraminic acid synthetase from mouse, but in these cases the phosphatase domain is clearly inactive as many of the active site residues are not conserved.
Probab=99.52 E-value=2.5e-14 Score=102.59 Aligned_cols=73 Identities=23% Similarity=0.287 Sum_probs=64.7
Q ss_pred HHHHHHHCCCcEEEEcCCcHHhHHHHHHHcCCCCCcEEecceeEecCCeeeeccCCCCCcCCCCHHHHHHHHHHHcCC--
Q 029504 96 LVKKLKANNKNVYLISGGFRHMINPIASVLGIPPENIFANQLLFKSSGEFLGFDANEPTSRSGGKAAAVQQIRKAHAY-- 173 (192)
Q Consensus 96 ~l~~l~~~g~~~~IvS~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~K~~~l~~~~~~~g~-- 173 (192)
++++|+++|++++|+|+++...++..++.+|+. .+|... .+|+..+.++++++|+
T Consensus 36 ~i~~Lk~~G~~i~IvTn~~~~~~~~~l~~~gi~--~~~~~~---------------------~~k~~~~~~~~~~~~~~~ 92 (154)
T TIGR01670 36 GIRCALKSGIEVAIITGRKAKLVEDRCKTLGIT--HLYQGQ---------------------SNKLIAFSDILEKLALAP 92 (154)
T ss_pred HHHHHHHCCCEEEEEECCCCHHHHHHHHHcCCC--EEEecc---------------------cchHHHHHHHHHHcCCCH
Confidence 899999999999999999999999999999997 665420 2588999999999997
Q ss_pred ceEEEEeCCccchhhhcc
Q 029504 174 KVLAMIGDGATDLEVSIF 191 (192)
Q Consensus 174 ~~~~~iGDs~~Di~~a~~ 191 (192)
++|+|||||.||++|++.
T Consensus 93 ~~~~~vGDs~~D~~~~~~ 110 (154)
T TIGR01670 93 ENVAYIGDDLIDWPVMEK 110 (154)
T ss_pred HHEEEECCCHHHHHHHHH
Confidence 899999999999999874
No 57
>TIGR01993 Pyr-5-nucltdase pyrimidine 5'-nucleotidase. These enzymes are members of the haloacid dehalogenase (HAD) superfamily of hydrolases, specifically the IA subfamily (variant 3, TIGR01509).
Probab=99.52 E-value=4.2e-13 Score=98.87 Aligned_cols=92 Identities=14% Similarity=0.225 Sum_probs=69.9
Q ss_pred CCCChhHHHHHHHHHHCCCcEEEEcCCcHHhHHHHHHHcCCCCCcEEecceeEecCCeeeeccCCCCCcCCCCHHHHHHH
Q 029504 87 PRLSPGIDELVKKLKANNKNVYLISGGFRHMINPIASVLGIPPENIFANQLLFKSSGEFLGFDANEPTSRSGGKAAAVQQ 166 (192)
Q Consensus 87 ~~~~~~~~e~l~~l~~~g~~~~IvS~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~K~~~l~~ 166 (192)
..++||+.++|+.|+ .+++|+|++....+...++.+|+. .+|...+..++.+. ..+..+ .++..+..
T Consensus 83 ~~~~~g~~~~L~~L~---~~~~i~Tn~~~~~~~~~l~~~gl~--~~fd~i~~~~~~~~------~~~~~K--P~p~~~~~ 149 (184)
T TIGR01993 83 LKPDPELRNLLLRLP---GRKIIFTNGDRAHARRALNRLGIE--DCFDGIFCFDTANP------DYLLPK--PSPQAYEK 149 (184)
T ss_pred CCCCHHHHHHHHhCC---CCEEEEeCCCHHHHHHHHHHcCcH--hhhCeEEEeecccC------ccCCCC--CCHHHHHH
Confidence 458999999999997 589999999999999999999997 67765443322110 000011 24578888
Q ss_pred HHHHcCC--ceEEEEeCCccchhhhcc
Q 029504 167 IRKAHAY--KVLAMIGDGATDLEVSIF 191 (192)
Q Consensus 167 ~~~~~g~--~~~~~iGDs~~Di~~a~~ 191 (192)
+++++|+ ++|++|||+..|+.+|+.
T Consensus 150 ~~~~~~~~~~~~l~vgD~~~di~aA~~ 176 (184)
T TIGR01993 150 ALREAGVDPERAIFFDDSARNIAAAKA 176 (184)
T ss_pred HHHHhCCCccceEEEeCCHHHHHHHHH
Confidence 8888887 889999999999999874
No 58
>TIGR01493 HAD-SF-IA-v2 Haloacid dehalogenase superfamily, subfamily IA, variant 2 with 3rd motif like haloacid dehalogenase. The Subfamily IA and IB capping domains are predicted by PSI-PRED to consist of an alpha helical bundle. Subfamily I encompasses such a wide region of sequence space (the sequences are highly divergent) that modelling it with a single alignment is impossible, resulting in an overly broad description which allows in many unrelated sequences. Subfamily IA and IB are separated based on an aparrent phylogenetic bifurcation. Subfamily IA is still too broad to model, but cannot be further subdivided into large chunks based on phylogenetic trees. Of the three motifs defining the HAD superfamily, the third has three variant forms : (1) hhhhsDxxx(x)D, (2) hhhhssxxx(x)D and (3) hhhhDDxxx(x)s where _s_ refers to a small amino acid and _h_ to a hydrophobic one. All three of these variants are found in subfamily IA. Individual models were made based on seeds exhibiting only o
Probab=99.52 E-value=2.1e-13 Score=99.57 Aligned_cols=84 Identities=12% Similarity=0.099 Sum_probs=65.0
Q ss_pred CCCChhHHHHHHHHHHCCCcEEEEcCCcHHhHHHHHHHcCCCCCcEEecceeEecCCeeeeccCCCCCcCCCCHHHHHHH
Q 029504 87 PRLSPGIDELVKKLKANNKNVYLISGGFRHMINPIASVLGIPPENIFANQLLFKSSGEFLGFDANEPTSRSGGKAAAVQQ 166 (192)
Q Consensus 87 ~~~~~~~~e~l~~l~~~g~~~~IvS~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~K~~~l~~ 166 (192)
..++||+.++|+ +++|+||+....++..++++|+. .+|...+..+ .....+| .+.....
T Consensus 89 ~~~~~g~~~~L~-------~~~i~Tn~~~~~~~~~l~~~~l~--~~fd~v~~~~--------~~~~~KP----~p~~f~~ 147 (175)
T TIGR01493 89 LPPWPDSAAALA-------RVAILSNASHWAFDQFAQQAGLP--WYFDRAFSVD--------TVRAYKP----DPVVYEL 147 (175)
T ss_pred CCCCCchHHHHH-------HHhhhhCCCHHHHHHHHHHCCCH--HHHhhhccHh--------hcCCCCC----CHHHHHH
Confidence 458999999998 37899999999999999999997 6676533221 1122222 3477788
Q ss_pred HHHHcCC--ceEEEEeCCccchhhhcc
Q 029504 167 IRKAHAY--KVLAMIGDGATDLEVSIF 191 (192)
Q Consensus 167 ~~~~~g~--~~~~~iGDs~~Di~~a~~ 191 (192)
.++++|+ ++|++|||+.+|+.+|+.
T Consensus 148 ~~~~~~~~p~~~l~vgD~~~Di~~A~~ 174 (175)
T TIGR01493 148 VFDTVGLPPDRVLMVAAHQWDLIGARK 174 (175)
T ss_pred HHHHHCCCHHHeEeEecChhhHHHHhc
Confidence 8888887 899999999999999975
No 59
>TIGR01549 HAD-SF-IA-v1 haloacid dehalogenase superfamily, subfamily IA, variant 1 with third motif having Dx(3-4)D or Dx(3-4)E. HAD subfamilies caused by an overly broad single model.
Probab=99.51 E-value=3.5e-13 Score=96.40 Aligned_cols=88 Identities=16% Similarity=0.143 Sum_probs=68.5
Q ss_pred CCChhHHHHHHHHHHCCCcEEEEcCCcHHhHHHHHHHcCCCCCcEEecceeEecCCeeeeccCCCCCcCCCCHHHHHHHH
Q 029504 88 RLSPGIDELVKKLKANNKNVYLISGGFRHMINPIASVLGIPPENIFANQLLFKSSGEFLGFDANEPTSRSGGKAAAVQQI 167 (192)
Q Consensus 88 ~~~~~~~e~l~~l~~~g~~~~IvS~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~K~~~l~~~ 167 (192)
...||+.++++.|+++|++++|+|++....+...++.+ +. .+|......+ ... . ..++..+..+
T Consensus 64 ~~~~g~~e~l~~L~~~g~~~~i~T~~~~~~~~~~~~~~-l~--~~f~~i~~~~--------~~~-~----Kp~~~~~~~~ 127 (154)
T TIGR01549 64 AYIRGAADLLKRLKEAGIKLGIISNGSLRAQKLLLRKH-LG--DYFDLILGSD--------EFG-A----KPEPEIFLAA 127 (154)
T ss_pred eeccCHHHHHHHHHHCcCeEEEEeCCchHHHHHHHHHH-HH--hcCcEEEecC--------CCC-C----CcCHHHHHHH
Confidence 46799999999999999999999999999999999886 54 4444322111 111 1 1356888999
Q ss_pred HHHcCC-ceEEEEeCCccchhhhcc
Q 029504 168 RKAHAY-KVLAMIGDGATDLEVSIF 191 (192)
Q Consensus 168 ~~~~g~-~~~~~iGDs~~Di~~a~~ 191 (192)
++++|+ .+|++|||+.+|+.+|+.
T Consensus 128 ~~~~~~~~~~l~iGDs~~Di~aa~~ 152 (154)
T TIGR01549 128 LESLGLPPEVLHVGDNLNDIEGARN 152 (154)
T ss_pred HHHcCCCCCEEEEeCCHHHHHHHHH
Confidence 998887 589999999999999874
No 60
>TIGR01672 AphA HAD superfamily (subfamily IIIB) phosphatase, TIGR01672. Supporting evidence for the inclusion in the HAD superfamily, whose phosphatase members are magnesium dependent, is the inhibition by EDTA and calcium ions, and stimulation by magnesium ion.
Probab=99.50 E-value=2.1e-13 Score=103.93 Aligned_cols=144 Identities=13% Similarity=0.126 Sum_probs=88.7
Q ss_pred chHHHHHHhhcCC--cEEecCCCcccchhHh-hHHHHHHHHHHHHHHHhCCCccHHHHHHHHHhhcCC--CHHHHHHHHH
Q 029504 9 NFVELERLLRNGL--PGCLASLFIENNSCLI-FLDGLTEFIFVFFARAMGGSVPFEEALAARLSLFKP--SLSQVQDFLE 83 (192)
Q Consensus 9 ~~~~~~~~~~~~k--~iifD~~~~DGTL~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~ 83 (192)
+-..+.+-+...+ +|+|| +||||+++ .... .|...+... ....+.+ ..+...+...
T Consensus 50 ~~~~~~~~~~~~~p~aViFD---lDgTLlDSs~~~~-------------~G~~~~s~~---~~~~l~g~~~w~~~~~~~~ 110 (237)
T TIGR01672 50 SVAQIENSLEGRPPIAVSFD---IDDTVLFSSPGFW-------------RGKKTFSPG---SEDYLKNQVFWEKVNNGWD 110 (237)
T ss_pred EHHHHHHhcCCCCCeEEEEe---CCCccccCcHHHh-------------CCcccCCHH---HhhhhcChHHHHHHHHhcc
Confidence 3456666666655 89999 99999998 2211 121111110 0111111 1222222222
Q ss_pred hCCCCCChhHHHHHHHHHHCCCcEEEEcCC----cHHhHHHHHHHcCCCCCcEEecceeEecCCeeeeccCCCCCcCCCC
Q 029504 84 KRPPRLSPGIDELVKKLKANNKNVYLISGG----FRHMINPIASVLGIPPENIFANQLLFKSSGEFLGFDANEPTSRSGG 159 (192)
Q Consensus 84 ~~~~~~~~~~~e~l~~l~~~g~~~~IvS~~----~~~~~~~~l~~~g~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 159 (192)
. ...+.+++.++|++++++|++++|+|++ ...+++.+++.+|++ .+|...+ .+.....+.+ .
T Consensus 111 ~-~s~p~~~a~elL~~l~~~G~~i~iVTnr~~~k~~~~a~~ll~~lGi~--~~f~~i~--------~~d~~~~~Kp---~ 176 (237)
T TIGR01672 111 E-FSIPKEVARQLIDMHQRRGDAIFFVTGRTPGKTDTVSKTLAKNFHIP--AMNPVIF--------AGDKPGQYQY---T 176 (237)
T ss_pred c-CCcchhHHHHHHHHHHHCCCEEEEEeCCCCCcCHHHHHHHHHHhCCc--hheeEEE--------CCCCCCCCCC---C
Confidence 2 2467788999999999999999999998 777999999999998 6664322 1111111111 2
Q ss_pred HHHHHHHHHHHcCCceEEEEeCCccchhhhcc
Q 029504 160 KAAAVQQIRKAHAYKVLAMIGDGATDLEVSIF 191 (192)
Q Consensus 160 K~~~l~~~~~~~g~~~~~~iGDs~~Di~~a~~ 191 (192)
|. .++++++ -++||||+.+|+.+|+-
T Consensus 177 ~~----~~l~~~~--i~i~vGDs~~DI~aAk~ 202 (237)
T TIGR01672 177 KT----QWIQDKN--IRIHYGDSDNDITAAKE 202 (237)
T ss_pred HH----HHHHhCC--CeEEEeCCHHHHHHHHH
Confidence 32 2445566 38999999999998863
No 61
>cd01427 HAD_like Haloacid dehalogenase-like hydrolases. The haloacid dehalogenase-like (HAD) superfamily includes L-2-haloacid dehalogenase, epoxide hydrolase, phosphoserine phosphatase, phosphomannomutase, phosphoglycolate phosphatase, P-type ATPase, and many others, all of which use a nucleophilic aspartate in their phosphoryl transfer reaction. All members possess a highly conserved alpha/beta core domain, and many also possess a small cap domain, the fold and function of which is variable. Members of this superfamily are sometimes referred to as belonging to the DDDD superfamily of phosphohydrolases.
Probab=99.50 E-value=1.2e-13 Score=95.89 Aligned_cols=105 Identities=18% Similarity=0.181 Sum_probs=71.9
Q ss_pred CCCChhHHHHHHHHHHCCCcEEEEcCCcHHhHHHHHHHcCCC--CCcEEecceeEecCCeeeeccCCCCCcCCCCHHHHH
Q 029504 87 PRLSPGIDELVKKLKANNKNVYLISGGFRHMINPIASVLGIP--PENIFANQLLFKSSGEFLGFDANEPTSRSGGKAAAV 164 (192)
Q Consensus 87 ~~~~~~~~e~l~~l~~~g~~~~IvS~~~~~~~~~~l~~~g~~--~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~K~~~l 164 (192)
..++|++.++++.|+++|++++|+|++....++..++.+++. ...++.........+.-.+............|...+
T Consensus 23 ~~~~~~~~~~l~~l~~~g~~i~ivS~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 102 (139)
T cd01427 23 LELYPGVKEALKELKEKGIKLALATNKSRREVLELLEELGLDDYFDPVITSNGAAIYYPKEGLFLGGGPFDIGKPNPDKL 102 (139)
T ss_pred CCcCcCHHHHHHHHHHCCCeEEEEeCchHHHHHHHHHHcCCchhhhheeccchhhhhcccccccccccccccCCCCHHHH
Confidence 468999999999999999999999999999999999999884 112332211000000000000001111123567788
Q ss_pred HHHHHHcCC--ceEEEEeCCccchhhhcc
Q 029504 165 QQIRKAHAY--KVLAMIGDGATDLEVSIF 191 (192)
Q Consensus 165 ~~~~~~~g~--~~~~~iGDs~~Di~~a~~ 191 (192)
+.+.+.++. +++++|||+.+|+++++.
T Consensus 103 ~~~~~~~~~~~~~~~~igD~~~d~~~~~~ 131 (139)
T cd01427 103 LAALKLLGVDPEEVLMVGDSLNDIEMAKA 131 (139)
T ss_pred HHHHHHcCCChhhEEEeCCCHHHHHHHHH
Confidence 888888776 889999999999999875
No 62
>PHA02597 30.2 hypothetical protein; Provisional
Probab=99.50 E-value=1.5e-13 Score=102.36 Aligned_cols=91 Identities=11% Similarity=0.119 Sum_probs=64.4
Q ss_pred CCCChhHHHHHHHHHHCCCcEEEEcCCcHHhHHHHHHHcCCCCCcEEecceeEecCCeeeeccCCCCCcCCCCHHHHHHH
Q 029504 87 PRLSPGIDELVKKLKANNKNVYLISGGFRHMINPIASVLGIPPENIFANQLLFKSSGEFLGFDANEPTSRSGGKAAAVQQ 166 (192)
Q Consensus 87 ~~~~~~~~e~l~~l~~~g~~~~IvS~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~K~~~l~~ 166 (192)
..++||+.++|+.|++. ++++++|++........++.+++. .+|...+ +..+..... ..|.+.+..
T Consensus 73 ~~~~pG~~e~L~~L~~~-~~~~i~Tn~~~~~~~~~~~~~~l~--~~f~~~f----~~i~~~~~~-------~~kp~~~~~ 138 (197)
T PHA02597 73 LSAYDDALDVINKLKED-YDFVAVTALGDSIDALLNRQFNLN--ALFPGAF----SEVLMCGHD-------ESKEKLFIK 138 (197)
T ss_pred ccCCCCHHHHHHHHHhc-CCEEEEeCCccchhHHHHhhCCHH--HhCCCcc----cEEEEeccC-------cccHHHHHH
Confidence 45899999999999987 468888888777766677777775 4332211 011111110 136688888
Q ss_pred HHHHcCCceEEEEeCCccchhhhcc
Q 029504 167 IRKAHAYKVLAMIGDGATDLEVSIF 191 (192)
Q Consensus 167 ~~~~~g~~~~~~iGDs~~Di~~a~~ 191 (192)
.++++|.+++++|||+.+|+.+|+.
T Consensus 139 a~~~~~~~~~v~vgDs~~di~aA~~ 163 (197)
T PHA02597 139 AKEKYGDRVVCFVDDLAHNLDAAHE 163 (197)
T ss_pred HHHHhCCCcEEEeCCCHHHHHHHHH
Confidence 8888886668999999999999864
No 63
>TIGR01656 Histidinol-ppas histidinol-phosphate phosphatase family domain. This domain is a member of the haloacid-dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. This superfamily is distinguished by the presence of three motifs: an N-terminal motif containing the nucleophilic aspartate, a central motif containing an conserved serine or threonine, and a C-terminal motif containing a conserved lysine (or arginine) and conserved aspartates. More specifically, the domian modelled here is a member of subfamily III of the HAD-superfamily by virtue of lacking a "capping" domain in either of the two common positions, between motifs 1 and 2, or between motifs 2 and 3.
Probab=99.48 E-value=2.4e-13 Score=96.78 Aligned_cols=93 Identities=15% Similarity=0.147 Sum_probs=67.8
Q ss_pred CCChhHHHHHHHHHHCCCcEEEEcCCcH---------------HhHHHHHHHcCCCCCcEEecceeEecCCeeeeccCCC
Q 029504 88 RLSPGIDELVKKLKANNKNVYLISGGFR---------------HMINPIASVLGIPPENIFANQLLFKSSGEFLGFDANE 152 (192)
Q Consensus 88 ~~~~~~~e~l~~l~~~g~~~~IvS~~~~---------------~~~~~~l~~~g~~~~~~~~~~~~~~~~g~~~~~~~~~ 152 (192)
.++||+.++|+.|+++|++++|+|++.. ..+...++.+|+.....|....... .....
T Consensus 27 ~~~~g~~~~l~~Lk~~g~~~~I~Sn~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~-------~~~~~ 99 (147)
T TIGR01656 27 QLRPGAVPALLTLRAAGYTVVVVTNQSGIGRGYFSAEAFRAPNGRVLELLRQLGVAVDGVLFCPHHPA-------DNCSC 99 (147)
T ss_pred EEcCChHHHHHHHHHCCCEEEEEeCCCcccCCcCCHHHHHHHHHHHHHHHHhCCCceeEEEECCCCCC-------CCCCC
Confidence 4889999999999999999999999873 4667788889986211222111000 00011
Q ss_pred CCcCCCCHHHHHHHHHHHcCC--ceEEEEeCCccchhhhcc
Q 029504 153 PTSRSGGKAAAVQQIRKAHAY--KVLAMIGDGATDLEVSIF 191 (192)
Q Consensus 153 ~~~~~~~K~~~l~~~~~~~g~--~~~~~iGDs~~Di~~a~~ 191 (192)
. ..+++.++.+++++|+ ++|++|||+..|+++|+.
T Consensus 100 ~----KP~~~~~~~~~~~~~~~~~e~i~IGDs~~Di~~A~~ 136 (147)
T TIGR01656 100 R----KPKPGLILEALKRLGVDASRSLVVGDRLRDLQAARN 136 (147)
T ss_pred C----CCCHHHHHHHHHHcCCChHHEEEEcCCHHHHHHHHH
Confidence 1 1367889999999987 889999999999999874
No 64
>TIGR01662 HAD-SF-IIIA HAD-superfamily hydrolase, subfamily IIIA. In the case of histidinol phosphatase and PNK-3'-phosphatase, this model represents a domain of a bifunctional system. In the histidinol phosphatase HisB, a C-terminal domain is an imidazoleglycerol-phosphate dehydratase which catalyzes a related step in histidine biosynthesis. In PNK-3'-phosphatase, N- and C-terminal domains constitute the polynucleotide kinase and DNA-binding components of the enzyme.
Probab=99.47 E-value=3e-13 Score=94.47 Aligned_cols=86 Identities=17% Similarity=0.159 Sum_probs=68.1
Q ss_pred CCChhHHHHHHHHHHCCCcEEEEcCCc--------HHhHHHHHHHcCCCCCcEEecceeEecCCeeeeccCCCCCcCCCC
Q 029504 88 RLSPGIDELVKKLKANNKNVYLISGGF--------RHMINPIASVLGIPPENIFANQLLFKSSGEFLGFDANEPTSRSGG 159 (192)
Q Consensus 88 ~~~~~~~e~l~~l~~~g~~~~IvS~~~--------~~~~~~~l~~~g~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 159 (192)
.++|++.++|++|++.|++++|+|++. ...++..++.+++. ..+.. + .+ + .. ..
T Consensus 25 ~~~~~v~~~l~~L~~~g~~l~i~Sn~~~~~~~~~~~~~~~~~l~~~~l~--~~~~~---~--~~---~----~~----KP 86 (132)
T TIGR01662 25 ILYPEVPDALAELKEAGYKVVIVTNQSGIGRGKFSSGRVARRLEELGVP--IDVLY---A--CP---H----CR----KP 86 (132)
T ss_pred eeCCCHHHHHHHHHHCCCEEEEEECCccccccHHHHHHHHHHHHHCCCC--EEEEE---E--CC---C----CC----CC
Confidence 488999999999999999999999998 78899999999986 22211 1 11 1 11 12
Q ss_pred HHHHHHHHHHHc-CC--ceEEEEeC-Cccchhhhcc
Q 029504 160 KAAAVQQIRKAH-AY--KVLAMIGD-GATDLEVSIF 191 (192)
Q Consensus 160 K~~~l~~~~~~~-g~--~~~~~iGD-s~~Di~~a~~ 191 (192)
+...+..+++++ ++ +++++||| +.+|+.+|+.
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~v~IGD~~~~Di~~A~~ 122 (132)
T TIGR01662 87 KPGMFLEALKRFNEIDPEESVYVGDQDLTDLQAAKR 122 (132)
T ss_pred ChHHHHHHHHHcCCCChhheEEEcCCCcccHHHHHH
Confidence 568888999988 47 89999999 7999999975
No 65
>COG0561 Cof Predicted hydrolases of the HAD superfamily [General function prediction only]
Probab=99.46 E-value=5.7e-13 Score=103.62 Aligned_cols=40 Identities=23% Similarity=0.278 Sum_probs=35.8
Q ss_pred CCcCCCCHHHHHHHHHHHcCC--ceEEEEeCCccchhhhccC
Q 029504 153 PTSRSGGKAAAVQQIRKAHAY--KVLAMIGDGATDLEVSIFI 192 (192)
Q Consensus 153 ~~~~~~~K~~~l~~~~~~~g~--~~~~~iGDs~~Di~~a~~~ 192 (192)
.++.+.+|+.+++.+++.+|+ +++++||||.||++|.++.
T Consensus 183 i~~~g~~K~~al~~l~~~lgi~~~~v~afGD~~ND~~Ml~~a 224 (264)
T COG0561 183 ITPKGVSKGYALQRLAKLLGIKLEEVIAFGDSTNDIEMLEVA 224 (264)
T ss_pred EecCCCchHHHHHHHHHHhCCCHHHeEEeCCccccHHHHHhc
Confidence 366678999999999999998 7899999999999999863
No 66
>PRK10748 flavin mononucleotide phosphatase; Provisional
Probab=99.46 E-value=1.3e-12 Score=100.25 Aligned_cols=85 Identities=14% Similarity=0.160 Sum_probs=63.6
Q ss_pred CCCChhHHHHHHHHHHCCCcEEEEcCCcHHhHHHHHHHcCCCCCcEEecceeEecCCeeeeccCCCCCcCCCCHHHHHHH
Q 029504 87 PRLSPGIDELVKKLKANNKNVYLISGGFRHMINPIASVLGIPPENIFANQLLFKSSGEFLGFDANEPTSRSGGKAAAVQQ 166 (192)
Q Consensus 87 ~~~~~~~~e~l~~l~~~g~~~~IvS~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~K~~~l~~ 166 (192)
..++||+.++|+.|++. ++++|+|++... ++.+|+. .+|...+..+. .... ..++..+..
T Consensus 112 ~~~~~gv~~~L~~L~~~-~~l~i~Tn~~~~-----~~~~gl~--~~fd~i~~~~~--------~~~~----KP~p~~~~~ 171 (238)
T PRK10748 112 IDVPQATHDTLKQLAKK-WPLVAITNGNAQ-----PELFGLG--DYFEFVLRAGP--------HGRS----KPFSDMYHL 171 (238)
T ss_pred CCCCccHHHHHHHHHcC-CCEEEEECCCch-----HHHCCcH--HhhceeEeccc--------CCcC----CCcHHHHHH
Confidence 46889999999999875 999999998764 3677887 66764442221 1111 125678888
Q ss_pred HHHHcCC--ceEEEEeCC-ccchhhhcc
Q 029504 167 IRKAHAY--KVLAMIGDG-ATDLEVSIF 191 (192)
Q Consensus 167 ~~~~~g~--~~~~~iGDs-~~Di~~a~~ 191 (192)
.++++|+ ++|++|||+ ..|+.+|+.
T Consensus 172 a~~~~~~~~~~~~~VGD~~~~Di~~A~~ 199 (238)
T PRK10748 172 AAEKLNVPIGEILHVGDDLTTDVAGAIR 199 (238)
T ss_pred HHHHcCCChhHEEEEcCCcHHHHHHHHH
Confidence 8888887 889999999 599999864
No 67
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=99.46 E-value=9.9e-13 Score=118.95 Aligned_cols=91 Identities=15% Similarity=0.129 Sum_probs=71.4
Q ss_pred CCChhHHHHHHHHHHCCCcEEEEcCCcHHhHHHHHHHcCCCCCcEEecceeEecCCeeeeccCCCCCcCCCCHHHHHHHH
Q 029504 88 RLSPGIDELVKKLKANNKNVYLISGGFRHMINPIASVLGIPPENIFANQLLFKSSGEFLGFDANEPTSRSGGKAAAVQQI 167 (192)
Q Consensus 88 ~~~~~~~e~l~~l~~~g~~~~IvS~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~K~~~l~~~ 167 (192)
.++||+.++|++|+++|++++|+|++....++..++.+|+.. .+|...+..+ .....+ .+++.+...
T Consensus 161 ~~~pG~~elL~~Lk~~G~~l~IvSn~~~~~~~~~L~~~gl~~-~~Fd~iv~~~--------~~~~~K----P~Pe~~~~a 227 (1057)
T PLN02919 161 IGFPGALELITQCKNKGLKVAVASSADRIKVDANLAAAGLPL-SMFDAIVSAD--------AFENLK----PAPDIFLAA 227 (1057)
T ss_pred ccCccHHHHHHHHHhCCCeEEEEeCCcHHHHHHHHHHcCCCh-hHCCEEEECc--------ccccCC----CCHHHHHHH
Confidence 479999999999999999999999999999999999999851 2344332111 111111 245788888
Q ss_pred HHHcCC--ceEEEEeCCccchhhhcc
Q 029504 168 RKAHAY--KVLAMIGDGATDLEVSIF 191 (192)
Q Consensus 168 ~~~~g~--~~~~~iGDs~~Di~~a~~ 191 (192)
++++|+ ++|++|||+.+|+++|+.
T Consensus 228 ~~~lgv~p~e~v~IgDs~~Di~AA~~ 253 (1057)
T PLN02919 228 AKILGVPTSECVVIEDALAGVQAARA 253 (1057)
T ss_pred HHHcCcCcccEEEEcCCHHHHHHHHH
Confidence 898987 899999999999999874
No 68
>PRK08942 D,D-heptose 1,7-bisphosphate phosphatase; Validated
Probab=99.45 E-value=3.4e-13 Score=99.23 Aligned_cols=93 Identities=16% Similarity=0.094 Sum_probs=64.2
Q ss_pred CCChhHHHHHHHHHHCCCcEEEEcCCcH---------------HhHHHHHHHcCCCCCcEEecceeEecCCeeeeccCCC
Q 029504 88 RLSPGIDELVKKLKANNKNVYLISGGFR---------------HMINPIASVLGIPPENIFANQLLFKSSGEFLGFDANE 152 (192)
Q Consensus 88 ~~~~~~~e~l~~l~~~g~~~~IvS~~~~---------------~~~~~~l~~~g~~~~~~~~~~~~~~~~g~~~~~~~~~ 152 (192)
.++||+.++|++|+++|++++|+|++.. ..+...++.+|+..+.++..... .......
T Consensus 29 ~~~pgv~e~L~~Lk~~g~~l~I~Tn~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~f~~i~~~~~~-------~~~~~~~ 101 (181)
T PRK08942 29 IPIPGSIEAIARLKQAGYRVVVATNQSGIARGLFTEAQLNALHEKMDWSLADRGGRLDGIYYCPHH-------PEDGCDC 101 (181)
T ss_pred EECCCHHHHHHHHHHCCCEEEEEeCCccccCCcCCHHHHHHHHHHHHHHHHHcCCccceEEECCCC-------CCCCCcC
Confidence 4889999999999999999999999863 23445566667642233322110 0000111
Q ss_pred CCcCCCCHHHHHHHHHHHcCC--ceEEEEeCCccchhhhcc
Q 029504 153 PTSRSGGKAAAVQQIRKAHAY--KVLAMIGDGATDLEVSIF 191 (192)
Q Consensus 153 ~~~~~~~K~~~l~~~~~~~g~--~~~~~iGDs~~Di~~a~~ 191 (192)
.+ .++..+..+++.+|+ ++|++|||+.+|+.+|+.
T Consensus 102 ~K----P~p~~~~~~~~~l~~~~~~~~~VgDs~~Di~~A~~ 138 (181)
T PRK08942 102 RK----PKPGMLLSIAERLNIDLAGSPMVGDSLRDLQAAAA 138 (181)
T ss_pred CC----CCHHHHHHHHHHcCCChhhEEEEeCCHHHHHHHHH
Confidence 11 245788888888887 899999999999999874
No 69
>PRK09484 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase; Provisional
Probab=99.44 E-value=1.8e-13 Score=100.84 Aligned_cols=74 Identities=22% Similarity=0.285 Sum_probs=64.0
Q ss_pred HHHHHHHHCCCcEEEEcCCcHHhHHHHHHHcCCCCCcEEecceeEecCCeeeeccCCCCCcCCCCHHHHHHHHHHHcCC-
Q 029504 95 ELVKKLKANNKNVYLISGGFRHMINPIASVLGIPPENIFANQLLFKSSGEFLGFDANEPTSRSGGKAAAVQQIRKAHAY- 173 (192)
Q Consensus 95 e~l~~l~~~g~~~~IvS~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~K~~~l~~~~~~~g~- 173 (192)
..++.++++|++++|+|+.....+..+++.+|+. .+|.. ...|+..+..+++++|+
T Consensus 55 ~~i~~L~~~Gi~v~I~T~~~~~~v~~~l~~lgl~--~~f~g---------------------~~~k~~~l~~~~~~~gl~ 111 (183)
T PRK09484 55 YGIRCLLTSGIEVAIITGRKSKLVEDRMTTLGIT--HLYQG---------------------QSNKLIAFSDLLEKLAIA 111 (183)
T ss_pred HHHHHHHHCCCEEEEEeCCCcHHHHHHHHHcCCc--eeecC---------------------CCcHHHHHHHHHHHhCCC
Confidence 3677888899999999999999999999999987 55531 12588999999999998
Q ss_pred -ceEEEEeCCccchhhhcc
Q 029504 174 -KVLAMIGDGATDLEVSIF 191 (192)
Q Consensus 174 -~~~~~iGDs~~Di~~a~~ 191 (192)
++|+||||+.||++|++.
T Consensus 112 ~~ev~~VGDs~~D~~~a~~ 130 (183)
T PRK09484 112 PEQVAYIGDDLIDWPVMEK 130 (183)
T ss_pred HHHEEEECCCHHHHHHHHH
Confidence 899999999999999975
No 70
>TIGR00213 GmhB_yaeD D,D-heptose 1,7-bisphosphate phosphatase. This family of proteins formerly designated yaeD resembles the histidinol phosphatase domain of the bifunctional protein HisB. The member from E. coli has been characterized as D,D-heptose 1,7-bisphosphate phosphatase, GmhB, involved in inner core LPS assembly (PubMed:11751812).
Probab=99.44 E-value=7.1e-13 Score=97.11 Aligned_cols=99 Identities=15% Similarity=0.154 Sum_probs=67.2
Q ss_pred CCChhHHHHHHHHHHCCCcEEEEcCCcH---------------HhHHHHHHHcCCCCCcEEecceeEecCCeeeeccCCC
Q 029504 88 RLSPGIDELVKKLKANNKNVYLISGGFR---------------HMINPIASVLGIPPENIFANQLLFKSSGEFLGFDANE 152 (192)
Q Consensus 88 ~~~~~~~e~l~~l~~~g~~~~IvS~~~~---------------~~~~~~l~~~g~~~~~~~~~~~~~~~~g~~~~~~~~~ 152 (192)
.++||+.++|++|+++|++++|+||+.. ..+..++..+++..+.++.........+.+.. ....
T Consensus 26 ~~~pgv~e~L~~Lk~~G~~l~i~TN~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~~~~~~-~~~~ 104 (176)
T TIGR00213 26 EFIDGVIDALRELKKMGYALVLVTNQSGIARGYFTEAQFEQLTEWMDWSLAERDVDLDGIYYCPHHPEGVEEFRQ-VCDC 104 (176)
T ss_pred EECCCHHHHHHHHHHCCCEEEEEeCCccccCCcCCHHHHHHHHHHHHHHHHHcCCCccEEEECCCCCcccccccC-CCCC
Confidence 4889999999999999999999999874 34455666666654343332211100000000 0111
Q ss_pred CCcCCCCHHHHHHHHHHHcCC--ceEEEEeCCccchhhhcc
Q 029504 153 PTSRSGGKAAAVQQIRKAHAY--KVLAMIGDGATDLEVSIF 191 (192)
Q Consensus 153 ~~~~~~~K~~~l~~~~~~~g~--~~~~~iGDs~~Di~~a~~ 191 (192)
. ..++..+...++++|+ ++|++|||+.+|+++|+.
T Consensus 105 ~----KP~p~~~~~a~~~~~~~~~~~v~VGDs~~Di~aA~~ 141 (176)
T TIGR00213 105 R----KPKPGMLLQARKELHIDMAQSYMVGDKLEDMQAGVA 141 (176)
T ss_pred C----CCCHHHHHHHHHHcCcChhhEEEEcCCHHHHHHHHH
Confidence 1 1356888999999997 899999999999999864
No 71
>TIGR01681 HAD-SF-IIIC HAD-superfamily phosphatase, subfamily IIIC. No member of this subfamily is characterized with respect to function, however the MDP-1 protein is a characterized phosphatase. All of the characterized enzymes within subfamily III are phosphatases, and all of the active site residues characteristic of HAD-superfamily phosphatases are present in subfamily IIIC.
Probab=99.42 E-value=4.3e-13 Score=93.26 Aligned_cols=85 Identities=15% Similarity=0.097 Sum_probs=67.2
Q ss_pred CCChhHHHHHHHHHHCCCcEEEEcCC-cHHhHHHHHHHcC-------CCCCcEEecceeEecCCeeeeccCCCCCcCCCC
Q 029504 88 RLSPGIDELVKKLKANNKNVYLISGG-FRHMINPIASVLG-------IPPENIFANQLLFKSSGEFLGFDANEPTSRSGG 159 (192)
Q Consensus 88 ~~~~~~~e~l~~l~~~g~~~~IvS~~-~~~~~~~~l~~~g-------~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 159 (192)
.++||+.++|+.|+++|++++|+|++ ....+..+++.++ +. .+|...... . . ..
T Consensus 29 ~~~~gv~e~L~~Lk~~g~~l~i~Sn~~~~~~~~~~l~~~~~~~~i~~l~--~~f~~~~~~--------~----~----~p 90 (128)
T TIGR01681 29 VTIKEIRDKLQTLKKNGFLLALASYNDDPHVAYELLKIFEDFGIIFPLA--EYFDPLTIG--------Y----W----LP 90 (128)
T ss_pred HHHHHHHHHHHHHHHCCeEEEEEeCCCCHHHHHHHHHhccccccchhhH--hhhhhhhhc--------C----C----Cc
Confidence 38899999999999999999999999 8888989999887 44 445433211 0 0 13
Q ss_pred HHHHHHHHHHHcC--C--ceEEEEeCCccchhhhc
Q 029504 160 KAAAVQQIRKAHA--Y--KVLAMIGDGATDLEVSI 190 (192)
Q Consensus 160 K~~~l~~~~~~~g--~--~~~~~iGDs~~Di~~a~ 190 (192)
|++.+...++++| + ++|++|||+..|+...+
T Consensus 91 kp~~~~~a~~~lg~~~~p~~~l~igDs~~n~~~~~ 125 (128)
T TIGR01681 91 KSPRLVEIALKLNGVLKPKSILFVDDRPDNNEEVD 125 (128)
T ss_pred HHHHHHHHHHHhcCCCCcceEEEECCCHhHHHHHH
Confidence 7788899999989 7 89999999999965443
No 72
>TIGR01261 hisB_Nterm histidinol-phosphatase. This model describes histidinol phosphatase. All known examples in the scope of this model are bifunctional proteins with a histidinol phosphatase domain followed by an imidazoleglycerol-phosphate dehydratase domain. These enzymatic domains catalyze the ninth and seventh steps, respectively, of histidine biosynthesis.
Probab=99.41 E-value=8.5e-13 Score=95.21 Aligned_cols=92 Identities=16% Similarity=0.196 Sum_probs=67.9
Q ss_pred CCChhHHHHHHHHHHCCCcEEEEcCC---------------cHHhHHHHHHHcCCCCCcEE-ecceeEecCCeeeeccCC
Q 029504 88 RLSPGIDELVKKLKANNKNVYLISGG---------------FRHMINPIASVLGIPPENIF-ANQLLFKSSGEFLGFDAN 151 (192)
Q Consensus 88 ~~~~~~~e~l~~l~~~g~~~~IvS~~---------------~~~~~~~~l~~~g~~~~~~~-~~~~~~~~~g~~~~~~~~ 151 (192)
.++||+.++|++|+++|++++|+||. ....+..+++.+|+..+.++ +... ......
T Consensus 29 ~~~pgv~e~L~~L~~~g~~l~IvSN~~g~~~~~~~~~~~~~~~~~~~~~l~~~gl~fd~ii~~~~~--------~~~~~~ 100 (161)
T TIGR01261 29 RFEKGVIPALLKLKKAGYKFVMVTNQDGLGTPSFPQADFDGPHNLMLQIFRSQGIIFDDVLICPHF--------PDDNCD 100 (161)
T ss_pred eECCCHHHHHHHHHHCCCeEEEEeCCccccCCcCCHHHHHHHHHHHHHHHHHCCCceeEEEECCCC--------CCCCCC
Confidence 58999999999999999999999996 35578888999999621121 1000 000111
Q ss_pred CCCcCCCCHHHHHHHHHHHcCC--ceEEEEeCCccchhhhcc
Q 029504 152 EPTSRSGGKAAAVQQIRKAHAY--KVLAMIGDGATDLEVSIF 191 (192)
Q Consensus 152 ~~~~~~~~K~~~l~~~~~~~g~--~~~~~iGDs~~Di~~a~~ 191 (192)
.. ..|...+..+++++++ ++|++|||+.+|+.+|+.
T Consensus 101 ~~----KP~~~~~~~~~~~~~~~~~e~l~IGD~~~Di~~A~~ 138 (161)
T TIGR01261 101 CR----KPKIKLLEPYLKKNLIDKARSYVIGDRETDMQLAEN 138 (161)
T ss_pred CC----CCCHHHHHHHHHHcCCCHHHeEEEeCCHHHHHHHHH
Confidence 11 1356889999998887 889999999999999875
No 73
>PRK01158 phosphoglycolate phosphatase; Provisional
Probab=99.40 E-value=2.2e-12 Score=98.19 Aligned_cols=38 Identities=24% Similarity=0.323 Sum_probs=33.6
Q ss_pred CcCCCCHHHHHHHHHHHcCC--ceEEEEeCCccchhhhcc
Q 029504 154 TSRSGGKAAAVQQIRKAHAY--KVLAMIGDGATDLEVSIF 191 (192)
Q Consensus 154 ~~~~~~K~~~l~~~~~~~g~--~~~~~iGDs~~Di~~a~~ 191 (192)
.+.+.+|+.+++.+++.+|+ +++++||||.||++|++.
T Consensus 152 ~~~~~~Kg~al~~l~~~~~i~~~~~i~~GD~~NDi~m~~~ 191 (230)
T PRK01158 152 KSPGVNKGTGLKKLAELMGIDPEEVAAIGDSENDLEMFEV 191 (230)
T ss_pred eeCCCChHHHHHHHHHHhCCCHHHEEEECCchhhHHHHHh
Confidence 33446899999999999998 889999999999999975
No 74
>TIGR02726 phenyl_P_delta phenylphosphate carboxylase, delta subunit. Members of this protein family are the alpha subunit of phenylphosphate carboxylase. Phenol (methyl-benzene) is converted to phenylphosphate, then para-carboxylated by this four-subunit enzyme, with the release of phosphate, to 4-hydroxybenzoate. The enzyme contains neither biotin nor thiamin pyrophosphate. This delta subunit belongs to HAD family hydrolases.
Probab=99.40 E-value=2.7e-13 Score=98.34 Aligned_cols=73 Identities=18% Similarity=0.127 Sum_probs=63.3
Q ss_pred HHHHHHHCCCcEEEEcCCcHHhHHHHHHHcCCCCCcEEecceeEecCCeeeeccCCCCCcCCCCHHHHHHHHHHHcCC--
Q 029504 96 LVKKLKANNKNVYLISGGFRHMINPIASVLGIPPENIFANQLLFKSSGEFLGFDANEPTSRSGGKAAAVQQIRKAHAY-- 173 (192)
Q Consensus 96 ~l~~l~~~g~~~~IvS~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~K~~~l~~~~~~~g~-- 173 (192)
-++.|++.|++++|+|++....++..++.+|+. .+|... ..|+..+..+++++++
T Consensus 42 ~~~~L~~~Gi~laIiT~k~~~~~~~~l~~lgi~--~~f~~~---------------------kpkp~~~~~~~~~l~~~~ 98 (169)
T TIGR02726 42 GVIVLQLCGIDVAIITSKKSGAVRHRAEELKIK--RFHEGI---------------------KKKTEPYAQMLEEMNISD 98 (169)
T ss_pred HHHHHHHCCCEEEEEECCCcHHHHHHHHHCCCc--EEEecC---------------------CCCHHHHHHHHHHcCcCH
Confidence 467788999999999999999999999999997 666521 1367899999999997
Q ss_pred ceEEEEeCCccchhhhcc
Q 029504 174 KVLAMIGDGATDLEVSIF 191 (192)
Q Consensus 174 ~~~~~iGDs~~Di~~a~~ 191 (192)
++|++|||+.||++|++.
T Consensus 99 ~ev~~iGD~~nDi~~~~~ 116 (169)
T TIGR02726 99 AEVCYVGDDLVDLSMMKR 116 (169)
T ss_pred HHEEEECCCHHHHHHHHH
Confidence 899999999999999875
No 75
>PRK08238 hypothetical protein; Validated
Probab=99.38 E-value=5.9e-12 Score=105.05 Aligned_cols=86 Identities=19% Similarity=0.273 Sum_probs=66.1
Q ss_pred CCChhHHHHHHHHHHCCCcEEEEcCCcHHhHHHHHHHcCCCCCcEEecceeEecCCeeeeccCCCCCcCCCCHHHHHHHH
Q 029504 88 RLSPGIDELVKKLKANNKNVYLISGGFRHMINPIASVLGIPPENIFANQLLFKSSGEFLGFDANEPTSRSGGKAAAVQQI 167 (192)
Q Consensus 88 ~~~~~~~e~l~~l~~~g~~~~IvS~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~K~~~l~~~ 167 (192)
.++|++.++++.++++|++++|+|++.+..++.+++++|+ .+.+++.+. . . ..++..|...+.+.
T Consensus 72 p~~pga~e~L~~lk~~G~~v~LaTas~~~~a~~i~~~lGl-Fd~Vigsd~------~------~--~~kg~~K~~~l~~~ 136 (479)
T PRK08238 72 PYNEEVLDYLRAERAAGRKLVLATASDERLAQAVAAHLGL-FDGVFASDG------T------T--NLKGAAKAAALVEA 136 (479)
T ss_pred CCChhHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHcCC-CCEEEeCCC------c------c--ccCCchHHHHHHHH
Confidence 4789999999999999999999999999999999999997 225555431 0 0 11223577766655
Q ss_pred HHHcCCceEEEEeCCccchhhhcc
Q 029504 168 RKAHAYKVLAMIGDGATDLEVSIF 191 (192)
Q Consensus 168 ~~~~g~~~~~~iGDs~~Di~~a~~ 191 (192)
. +.+++.|+|||.+|+++++.
T Consensus 137 l---~~~~~~yvGDS~~Dlp~~~~ 157 (479)
T PRK08238 137 F---GERGFDYAGNSAADLPVWAA 157 (479)
T ss_pred h---CccCeeEecCCHHHHHHHHh
Confidence 4 33468999999999999875
No 76
>COG1011 Predicted hydrolase (HAD superfamily) [General function prediction only]
Probab=99.38 E-value=2.4e-11 Score=92.20 Aligned_cols=90 Identities=14% Similarity=0.147 Sum_probs=73.2
Q ss_pred CCCChhHHHHHHHHHHCCCcEEEEcCCcHHhHHHHHHHcCCCCCcEEecceeEecCCeeeeccCCCCCcCCCCHHHHHHH
Q 029504 87 PRLSPGIDELVKKLKANNKNVYLISGGFRHMINPIASVLGIPPENIFANQLLFKSSGEFLGFDANEPTSRSGGKAAAVQQ 166 (192)
Q Consensus 87 ~~~~~~~~e~l~~l~~~g~~~~IvS~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~K~~~l~~ 166 (192)
..++|++.++|+.++++ ++++|+||+....+...++.+|+. .+|...+..+.-| ..+|. .+..+.
T Consensus 98 ~~~~~~~~~~L~~l~~~-~~l~ilTNg~~~~~~~~l~~~gl~--~~Fd~v~~s~~~g--------~~KP~----~~~f~~ 162 (229)
T COG1011 98 LPDYPEALEALKELGKK-YKLGILTNGARPHQERKLRQLGLL--DYFDAVFISEDVG--------VAKPD----PEIFEY 162 (229)
T ss_pred CccChhHHHHHHHHHhh-ccEEEEeCCChHHHHHHHHHcCCh--hhhheEEEecccc--------cCCCC----cHHHHH
Confidence 46999999999999999 999999999999999999999987 7888776554322 23333 378888
Q ss_pred HHHHcCC--ceEEEEeCCc-cchhhhcc
Q 029504 167 IRKAHAY--KVLAMIGDGA-TDLEVSIF 191 (192)
Q Consensus 167 ~~~~~g~--~~~~~iGDs~-~Di~~a~~ 191 (192)
+++++|+ ++|++|||+. ||+..|+.
T Consensus 163 ~~~~~g~~p~~~l~VgD~~~~di~gA~~ 190 (229)
T COG1011 163 ALEKLGVPPEEALFVGDSLENDILGARA 190 (229)
T ss_pred HHHHcCCCcceEEEECCChhhhhHHHHh
Confidence 8999997 7899999996 67677653
No 77
>PRK15126 thiamin pyrimidine pyrophosphate hydrolase; Provisional
Probab=99.38 E-value=4e-12 Score=99.29 Aligned_cols=39 Identities=18% Similarity=0.082 Sum_probs=35.0
Q ss_pred CCcCCCCHHHHHHHHHHHcCC--ceEEEEeCCccchhhhcc
Q 029504 153 PTSRSGGKAAAVQQIRKAHAY--KVLAMIGDGATDLEVSIF 191 (192)
Q Consensus 153 ~~~~~~~K~~~l~~~~~~~g~--~~~~~iGDs~~Di~~a~~ 191 (192)
.++.+.+|+.+++.+++.+|+ +++++|||+.||++|.+.
T Consensus 182 I~~~g~sKg~al~~l~~~~gi~~~~v~afGD~~NDi~Ml~~ 222 (272)
T PRK15126 182 VLPVGCNKGAALAVLSQHLGLSLADCMAFGDAMNDREMLGS 222 (272)
T ss_pred eecCCCChHHHHHHHHHHhCCCHHHeEEecCCHHHHHHHHH
Confidence 355557999999999999998 899999999999999875
No 78
>TIGR01487 SPP-like sucrose-phosphate phosphatase-like hydrolase, Archaeal. TIGR01482, in turn, is a member of the IIB subfamily (TIGR01484) of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases.
Probab=99.38 E-value=4.6e-12 Score=95.65 Aligned_cols=39 Identities=18% Similarity=0.366 Sum_probs=34.1
Q ss_pred CcCCCCHHHHHHHHHHHcCC--ceEEEEeCCccchhhhccC
Q 029504 154 TSRSGGKAAAVQQIRKAHAY--KVLAMIGDGATDLEVSIFI 192 (192)
Q Consensus 154 ~~~~~~K~~~l~~~~~~~g~--~~~~~iGDs~~Di~~a~~~ 192 (192)
.+.+.+|+.+++.+++.+|+ +++++||||.||++|++.+
T Consensus 142 ~~~~~~K~~~i~~l~~~~~i~~~~~i~iGDs~ND~~ml~~a 182 (215)
T TIGR01487 142 MKKGVDKGVGVEKLKELLGIKPEEVAAIGDSENDIDLFRVV 182 (215)
T ss_pred ecCCCChHHHHHHHHHHhCCCHHHEEEECCCHHHHHHHHhC
Confidence 34457999999999999998 6899999999999999853
No 79
>PRK10976 putative hydrolase; Provisional
Probab=99.37 E-value=4.5e-12 Score=98.65 Aligned_cols=39 Identities=26% Similarity=0.334 Sum_probs=34.6
Q ss_pred CcCCCCHHHHHHHHHHHcCC--ceEEEEeCCccchhhhccC
Q 029504 154 TSRSGGKAAAVQQIRKAHAY--KVLAMIGDGATDLEVSIFI 192 (192)
Q Consensus 154 ~~~~~~K~~~l~~~~~~~g~--~~~~~iGDs~~Di~~a~~~ 192 (192)
++.+.+|+.+++.+++.+|+ +++++||||.||++|.+++
T Consensus 185 ~~~gvsKg~al~~l~~~lgi~~~~viafGD~~NDi~Ml~~a 225 (266)
T PRK10976 185 MAGGVSKGHALEAVAKKLGYSLKDCIAFGDGMNDAEMLSMA 225 (266)
T ss_pred EcCCCChHHHHHHHHHHcCCCHHHeEEEcCCcccHHHHHHc
Confidence 44457999999999999998 8999999999999999763
No 80
>PRK10513 sugar phosphate phosphatase; Provisional
Probab=99.37 E-value=5.5e-12 Score=98.33 Aligned_cols=39 Identities=15% Similarity=0.280 Sum_probs=35.0
Q ss_pred CcCCCCHHHHHHHHHHHcCC--ceEEEEeCCccchhhhccC
Q 029504 154 TSRSGGKAAAVQQIRKAHAY--KVLAMIGDGATDLEVSIFI 192 (192)
Q Consensus 154 ~~~~~~K~~~l~~~~~~~g~--~~~~~iGDs~~Di~~a~~~ 192 (192)
++.+.+|+.+++.+++.+|+ +++++||||.||++|.+++
T Consensus 191 ~~~gvsKg~al~~l~~~~gi~~~~v~afGD~~NDi~Ml~~a 231 (270)
T PRK10513 191 LDKRVNKGTGVKSLAEHLGIKPEEVMAIGDQENDIAMIEYA 231 (270)
T ss_pred eCCCCChHHHHHHHHHHhCCCHHHEEEECCchhhHHHHHhC
Confidence 45567999999999999998 8999999999999999863
No 81
>PRK06769 hypothetical protein; Validated
Probab=99.35 E-value=4.5e-12 Score=92.60 Aligned_cols=91 Identities=20% Similarity=0.173 Sum_probs=64.9
Q ss_pred CCChhHHHHHHHHHHCCCcEEEEcCCcHH--------hHHHHHHHcCCCCCcEEecceeEecCCeeeeccCCCCCcCCCC
Q 029504 88 RLSPGIDELVKKLKANNKNVYLISGGFRH--------MINPIASVLGIPPENIFANQLLFKSSGEFLGFDANEPTSRSGG 159 (192)
Q Consensus 88 ~~~~~~~e~l~~l~~~g~~~~IvS~~~~~--------~~~~~l~~~g~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 159 (192)
.++||+.++|++|+++|++++|+|++... .....++.+|+. .++...... +...... ..
T Consensus 28 ~~~pgv~e~L~~Lk~~G~~l~I~Tn~~~~~~~~~~~~~~~~~l~~~g~~--~~~~~~~~~-------~~~~~~~----KP 94 (173)
T PRK06769 28 TLFPFTKASLQKLKANHIKIFSFTNQPGIADGIATIADFVQELKGFGFD--DIYLCPHKH-------GDGCECR----KP 94 (173)
T ss_pred EECCCHHHHHHHHHHCCCEEEEEECCchhcCCcCCHHHHHHHHHhCCcC--EEEECcCCC-------CCCCCCC----CC
Confidence 47899999999999999999999998642 123346677776 554322100 0001111 13
Q ss_pred HHHHHHHHHHHcCC--ceEEEEeCCccchhhhcc
Q 029504 160 KAAAVQQIRKAHAY--KVLAMIGDGATDLEVSIF 191 (192)
Q Consensus 160 K~~~l~~~~~~~g~--~~~~~iGDs~~Di~~a~~ 191 (192)
++..+.+.+++++. ++|++|||+.+|+.+|+.
T Consensus 95 ~p~~~~~~~~~l~~~p~~~i~IGD~~~Di~aA~~ 128 (173)
T PRK06769 95 STGMLLQAAEKHGLDLTQCAVIGDRWTDIVAAAK 128 (173)
T ss_pred CHHHHHHHHHHcCCCHHHeEEEcCCHHHHHHHHH
Confidence 56888899988887 899999999999999874
No 82
>TIGR01664 DNA-3'-Pase DNA 3'-phosphatase. The central phosphatase domain is a member of the IIIA subfamily (TIGR01662) of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. As is common in this superfamily, the enzyme is magnesium dependent. A difference between this enzyme and other HAD-superfamily phosphatases is in the third conserved catalytic motif which usually contains two conserved aspartate residues believed to be involved in binding the magnesium ion. Here, the second aspartate is usually replaced by an arginine residue which may indicate an interaction with the phosphate backbone of the substrate. Alternatively, there is an additional conserved aspartate downstream of the ususal site which may indicate slightly different fold in this region.
Probab=99.35 E-value=4.4e-12 Score=92.00 Aligned_cols=87 Identities=13% Similarity=0.122 Sum_probs=64.0
Q ss_pred CChhHHHHHHHHHHCCCcEEEEcCCcHH------------hHHHHHHHcCCCCCcEEecceeEecCCeeeeccCCCCCcC
Q 029504 89 LSPGIDELVKKLKANNKNVYLISGGFRH------------MINPIASVLGIPPENIFANQLLFKSSGEFLGFDANEPTSR 156 (192)
Q Consensus 89 ~~~~~~e~l~~l~~~g~~~~IvS~~~~~------------~~~~~l~~~g~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 156 (192)
++||+.++|+.|+++|++++|+|++... .++.+++.+|+. . .... .. .. .....
T Consensus 43 ~~pgv~e~L~~Lk~~G~~l~I~TN~~~~~~~~~~~~~~~~~i~~~l~~~gl~--~--~~ii-~~-~~------~~~~K-- 108 (166)
T TIGR01664 43 LYPEIPAKLQELDDEGYKIVIFTNQSGIGRGKLSAESFKNKIEAFLEKLKVP--I--QVLA-AT-HA------GLYRK-- 108 (166)
T ss_pred ecCCHHHHHHHHHHCCCEEEEEeCCcccccCcccHHHHHHHHHHHHHHcCCC--E--EEEE-ec-CC------CCCCC--
Confidence 6899999999999999999999998763 567889999986 2 1111 11 11 00111
Q ss_pred CCCHHHHHHHHHHHcC--C--ceEEEEeCCc--------cchhhhcc
Q 029504 157 SGGKAAAVQQIRKAHA--Y--KVLAMIGDGA--------TDLEVSIF 191 (192)
Q Consensus 157 ~~~K~~~l~~~~~~~g--~--~~~~~iGDs~--------~Di~~a~~ 191 (192)
.+...+..+.+++| + ++++||||+. +|+++|+.
T Consensus 109 --P~p~~~~~~~~~~~~~~~~~~~v~VGD~~~~~~~~~~~Di~aA~~ 153 (166)
T TIGR01664 109 --PMTGMWEYLQSQYNSPIKMTRSFYVGDAAGRKLDFSDADIKFAKN 153 (166)
T ss_pred --CccHHHHHHHHHcCCCCCchhcEEEECCCCCCCCCchhHHHHHHH
Confidence 24567888888888 5 8899999996 69999864
No 83
>PRK10530 pyridoxal phosphate (PLP) phosphatase; Provisional
Probab=99.33 E-value=1.3e-11 Score=96.14 Aligned_cols=38 Identities=18% Similarity=0.286 Sum_probs=33.7
Q ss_pred CcCCCCHHHHHHHHHHHcCC--ceEEEEeCCccchhhhcc
Q 029504 154 TSRSGGKAAAVQQIRKAHAY--KVLAMIGDGATDLEVSIF 191 (192)
Q Consensus 154 ~~~~~~K~~~l~~~~~~~g~--~~~~~iGDs~~Di~~a~~ 191 (192)
.+.+.+|+.+++.+++.+|+ +++++||||.||++|++.
T Consensus 194 ~~~~~~K~~~l~~l~~~~gi~~~e~i~~GD~~NDi~m~~~ 233 (272)
T PRK10530 194 ARKGNSKGKRLTQWVEAQGWSMKNVVAFGDNFNDISMLEA 233 (272)
T ss_pred ecCCCChHHHHHHHHHHcCCCHHHeEEeCCChhhHHHHHh
Confidence 34456899999999999998 899999999999999985
No 84
>TIGR01685 MDP-1 magnesium-dependent phosphatase-1. This model represents two closely related clades of sequences from eukaryotes and archaea. The mouse enzyme has been characterized as a phosphatase and has been positively identified as a member of the haloacid dehalogenase (HAD) superfamily by site-directed mutagenesis of the active site residues.
Probab=99.29 E-value=1.3e-12 Score=94.99 Aligned_cols=91 Identities=13% Similarity=0.166 Sum_probs=64.5
Q ss_pred CCCChhHHHHHHHHHHCCCcEEEEcCC-cHHhHHHHHHHcCCCC-C------cEEecceeEecCCeeeeccCCCCCcCCC
Q 029504 87 PRLSPGIDELVKKLKANNKNVYLISGG-FRHMINPIASVLGIPP-E------NIFANQLLFKSSGEFLGFDANEPTSRSG 158 (192)
Q Consensus 87 ~~~~~~~~e~l~~l~~~g~~~~IvS~~-~~~~~~~~l~~~g~~~-~------~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 158 (192)
..++||+.++|+.|+++|++++|+|++ ....++.+++.+++.. . .+|...+..+ ... .
T Consensus 44 ~~l~pGv~elL~~Lk~~G~~l~I~Sn~~~~~~~~~~L~~~~l~~~~~~~~~~~~Fd~iv~~~--------~~~------~ 109 (174)
T TIGR01685 44 VTLIKEVRDVLQTLKDAGTYLATASWNDVPEWAYEILGTFEITYAGKTVPMHSLFDDRIEIY--------KPN------K 109 (174)
T ss_pred EEEcccHHHHHHHHHHCCCEEEEEeCCCChHHHHHHHHhCCcCCCCCcccHHHhceeeeecc--------CCc------h
Confidence 468999999999999999999999988 8889999999998741 0 2333222111 110 0
Q ss_pred CH--HHHHHHHHHHc--CC--ceEEEEeCCccchhhhcc
Q 029504 159 GK--AAAVQQIRKAH--AY--KVLAMIGDGATDLEVSIF 191 (192)
Q Consensus 159 ~K--~~~l~~~~~~~--g~--~~~~~iGDs~~Di~~a~~ 191 (192)
.| ...++.+.+.+ |+ ++|++|||+..|+.+|+.
T Consensus 110 ~kp~~~i~~~~~~~~~~gl~p~e~l~VgDs~~di~aA~~ 148 (174)
T TIGR01685 110 AKQLEMILQKVNKVDPSVLKPAQILFFDDRTDNVREVWG 148 (174)
T ss_pred HHHHHHHHHHhhhcccCCCCHHHeEEEcChhHhHHHHHH
Confidence 12 23344454443 45 899999999999999864
No 85
>PF08282 Hydrolase_3: haloacid dehalogenase-like hydrolase; InterPro: IPR013200 The Haloacid Dehydrogenase (HAD) superfamily includes phosphatases, phosphonatases, P-type ATPases, beta-phosphoglucomutases, phosphomannomutases, and dehalogenases, which are involved in a variety of cellular processes ranging from amino acid biosynthesis to detoxification []. This HAD domain is found in several distinct enzymes including: Phospholipid-transporting ATPase 1 (3.6.3.1 from EC), a putative lipid-flipping enzyme involved in cold tolerance in Arabidopsis [] 3-deoxy-D-manno-octulosonate (KDO) 8-phosphate phosphatase (3.1.3.45 from EC), which catalyses the final step in the biosynthesis of KDO - a component of lipopolysaccharide in Gram-negative bacteria [] Mannosyl-3-phosphoglycerate phosphatase (3.1.3.70 from EC), which hydrolyzes mannosyl-3-phosphoglycerate to form the osmolyte mannosylglycerate [] Phosphoglycolate phopshatase (3.1.3.18 from EC), which catalyses the dephosphorylation of 2-phosphoglycolate [] ; PDB: 2B30_B 3R4C_A 1XVI_B 3IJ5_B 3MMZ_C 3L7Y_A 1XPJ_C 1RLT_B 1RLM_B 2HF2_A ....
Probab=99.29 E-value=1.7e-11 Score=93.74 Aligned_cols=40 Identities=25% Similarity=0.356 Sum_probs=35.9
Q ss_pred CChhHHHHHHHHHHCCCcEEEEcCCcHHhHHHHHHHcCCC
Q 029504 89 LSPGIDELVKKLKANNKNVYLISGGFRHMINPIASVLGIP 128 (192)
Q Consensus 89 ~~~~~~e~l~~l~~~g~~~~IvS~~~~~~~~~~l~~~g~~ 128 (192)
+.|...+.|+.++++|++++++||.....+..+++.+++.
T Consensus 16 i~~~~~~al~~l~~~g~~~~i~TGR~~~~~~~~~~~~~~~ 55 (254)
T PF08282_consen 16 ISPETIEALKELQEKGIKLVIATGRSYSSIKRLLKELGID 55 (254)
T ss_dssp SCHHHHHHHHHHHHTTCEEEEECSSTHHHHHHHHHHTTHC
T ss_pred eCHHHHHHHHhhcccceEEEEEccCcccccccccccccch
Confidence 6688899999999999999999999999999999888876
No 86
>PLN02811 hydrolase
Probab=99.29 E-value=8.2e-11 Score=89.14 Aligned_cols=93 Identities=11% Similarity=0.172 Sum_probs=63.1
Q ss_pred CCCChhHHHHHHHHHHCCCcEEEEcCCcHHhHH-HHHHHcCCCCCcEEecceeEecCCeeeeccCCCCCcCCCCHHHHHH
Q 029504 87 PRLSPGIDELVKKLKANNKNVYLISGGFRHMIN-PIASVLGIPPENIFANQLLFKSSGEFLGFDANEPTSRSGGKAAAVQ 165 (192)
Q Consensus 87 ~~~~~~~~e~l~~l~~~g~~~~IvS~~~~~~~~-~~l~~~g~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~K~~~l~ 165 (192)
..++||+.++|+.|+++|++++|+|++...... ...+..++. .+|...+..+ + ......+| ++..+.
T Consensus 77 ~~l~~gv~e~l~~L~~~g~~~~i~S~~~~~~~~~~~~~~~~l~--~~f~~i~~~~-~-----~~~~~~KP----~p~~~~ 144 (220)
T PLN02811 77 SDLMPGAERLVRHLHAKGIPIAIATGSHKRHFDLKTQRHGELF--SLMHHVVTGD-D-----PEVKQGKP----APDIFL 144 (220)
T ss_pred CCCCccHHHHHHHHHHCCCcEEEEeCCchhhHHHHHcccHHHH--hhCCEEEECC-h-----hhccCCCC----CcHHHH
Confidence 468999999999999999999999999875443 333334554 4444322111 0 01111222 346777
Q ss_pred HHHHHcC---C--ceEEEEeCCccchhhhcc
Q 029504 166 QIRKAHA---Y--KVLAMIGDGATDLEVSIF 191 (192)
Q Consensus 166 ~~~~~~g---~--~~~~~iGDs~~Di~~a~~ 191 (192)
..+++++ + ++|++|||+..|+.+|+.
T Consensus 145 ~a~~~~~~~~~~~~~~v~IgDs~~di~aA~~ 175 (220)
T PLN02811 145 AAARRFEDGPVDPGKVLVFEDAPSGVEAAKN 175 (220)
T ss_pred HHHHHhCCCCCCccceEEEeccHhhHHHHHH
Confidence 7777775 5 889999999999999874
No 87
>PLN02887 hydrolase family protein
Probab=99.28 E-value=3.4e-11 Score=102.38 Aligned_cols=39 Identities=21% Similarity=0.321 Sum_probs=34.6
Q ss_pred CcCCCCHHHHHHHHHHHcCC--ceEEEEeCCccchhhhccC
Q 029504 154 TSRSGGKAAAVQQIRKAHAY--KVLAMIGDGATDLEVSIFI 192 (192)
Q Consensus 154 ~~~~~~K~~~l~~~~~~~g~--~~~~~iGDs~~Di~~a~~~ 192 (192)
++.+.+|+.+++.+++.+|+ +++++||||.||++|.+++
T Consensus 502 ~p~gvSKG~ALk~L~e~lGI~~eeviAFGDs~NDIeMLe~A 542 (580)
T PLN02887 502 VPPGTSKGNGVKMLLNHLGVSPDEIMAIGDGENDIEMLQLA 542 (580)
T ss_pred ecCCCCHHHHHHHHHHHcCCCHHHEEEEecchhhHHHHHHC
Confidence 34457999999999999998 8999999999999999863
No 88
>TIGR01691 enolase-ppase 2,3-diketo-5-methylthio-1-phosphopentane phosphatase. This enzyme is the enolase-phosphatase of methionine salvage, a pathway that regenerates methionine from methylthioadenosine (MTA). Adenosylmethionine (AdoMet) is a donor of different moieties for various processes, including methylation reactions. Use of AdoMet for spermidine biosynthesis, which leads to polyamine biosynthesis, leaves MTA as a by-product that must be cleared. In Bacillus subtilis and related species, this single protein is replaced by separate enzymes with enolase and phosphatase activities.
Probab=99.26 E-value=1.8e-10 Score=87.08 Aligned_cols=89 Identities=11% Similarity=0.134 Sum_probs=68.8
Q ss_pred CCCChhHHHHHHHHHHCCCcEEEEcCCcHHhHHHHHHHc---CCCCCcEEecceeEecCCeeeeccCCCCCcCCCCHHHH
Q 029504 87 PRLSPGIDELVKKLKANNKNVYLISGGFRHMINPIASVL---GIPPENIFANQLLFKSSGEFLGFDANEPTSRSGGKAAA 163 (192)
Q Consensus 87 ~~~~~~~~e~l~~l~~~g~~~~IvS~~~~~~~~~~l~~~---g~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~K~~~ 163 (192)
..++||+.++|+.|+++|++++|+|++....++.++++. ++. .+|+..+ +. . .+ .+ .++..
T Consensus 94 ~~lypgv~e~L~~Lk~~G~~l~I~Sn~s~~~~~~~~~~~~~~~L~--~~f~~~f--d~--~-~g-----~K----P~p~~ 157 (220)
T TIGR01691 94 SHLYPDVPPALEAWLQLGLRLAVYSSGSVPAQKLLFGHSDAGNLT--PYFSGYF--DT--T-VG-----LK----TEAQS 157 (220)
T ss_pred cCcCcCHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHhhccccchh--hhcceEE--Ee--C-cc-----cC----CCHHH
Confidence 469999999999999999999999999999888888875 343 3343222 10 0 11 11 25678
Q ss_pred HHHHHHHcCC--ceEEEEeCCccchhhhcc
Q 029504 164 VQQIRKAHAY--KVLAMIGDGATDLEVSIF 191 (192)
Q Consensus 164 l~~~~~~~g~--~~~~~iGDs~~Di~~a~~ 191 (192)
+..+++++|+ ++|++|||+..|+.+|+.
T Consensus 158 y~~i~~~lgv~p~e~lfVgDs~~Di~AA~~ 187 (220)
T TIGR01691 158 YVKIAGQLGSPPREILFLSDIINELDAARK 187 (220)
T ss_pred HHHHHHHhCcChhHEEEEeCCHHHHHHHHH
Confidence 8888998887 889999999999999874
No 89
>TIGR01482 SPP-subfamily Sucrose-phosphate phosphatase subfamily. catalyze the same reaction as SPP.
Probab=99.26 E-value=6.3e-11 Score=89.85 Aligned_cols=38 Identities=16% Similarity=0.254 Sum_probs=34.0
Q ss_pred CcCCCCHHHHHHHHHHHcCC--ceEEEEeCCccchhhhcc
Q 029504 154 TSRSGGKAAAVQQIRKAHAY--KVLAMIGDGATDLEVSIF 191 (192)
Q Consensus 154 ~~~~~~K~~~l~~~~~~~g~--~~~~~iGDs~~Di~~a~~ 191 (192)
.+.+.+|+.+++.+++.+|+ +++++|||+.||++|++.
T Consensus 144 ~~~~~~K~~~i~~l~~~~~i~~~~~i~~GD~~NDi~m~~~ 183 (225)
T TIGR01482 144 LPQGVNKGVAVKKLKEKLGIKPGETLVCGDSENDIDLFEV 183 (225)
T ss_pred eeCCCCHHHHHHHHHHHhCCCHHHEEEECCCHhhHHHHHh
Confidence 44557999999999999998 889999999999999975
No 90
>PRK11009 aphA acid phosphatase/phosphotransferase; Provisional
Probab=99.24 E-value=7.3e-11 Score=89.96 Aligned_cols=86 Identities=16% Similarity=0.206 Sum_probs=61.9
Q ss_pred CCCChhHHHHHHHHHHCCCcEEEEcCC----cHHhHHHHHHHcCCCCCcEEecceeEecCCeeeeccCCCCCcCCCCHHH
Q 029504 87 PRLSPGIDELVKKLKANNKNVYLISGG----FRHMINPIASVLGIPPENIFANQLLFKSSGEFLGFDANEPTSRSGGKAA 162 (192)
Q Consensus 87 ~~~~~~~~e~l~~l~~~g~~~~IvS~~----~~~~~~~~l~~~g~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~K~~ 162 (192)
..++||++++|+.|+++|++++++|++ ...+++.+++.+|++..+.|...+ .+... ....|..
T Consensus 113 a~p~~Ga~elL~~L~~~G~~I~iVTnR~~~k~~~t~~~Llk~~gip~~~~f~vil--------~gd~~-----~K~~K~~ 179 (237)
T PRK11009 113 SIPKEVARQLIDMHVKRGDSIYFITGRTATKTETVSKTLADDFHIPADNMNPVIF--------AGDKP-----GQYTKTQ 179 (237)
T ss_pred CcchHHHHHHHHHHHHCCCeEEEEeCCCCcccHHHHHHHHHHcCCCcccceeEEE--------cCCCC-----CCCCHHH
Confidence 578999999999999999999999995 466888888889995335554222 11110 1124544
Q ss_pred HHHHHHHHcCCceEEEEeCCccchhhhcc
Q 029504 163 AVQQIRKAHAYKVLAMIGDGATDLEVSIF 191 (192)
Q Consensus 163 ~l~~~~~~~g~~~~~~iGDs~~Di~~a~~ 191 (192)
++++++ .+++|||+.+|+.+|+.
T Consensus 180 ----~l~~~~--i~I~IGDs~~Di~aA~~ 202 (237)
T PRK11009 180 ----WLKKKN--IRIFYGDSDNDITAARE 202 (237)
T ss_pred ----HHHhcC--CeEEEcCCHHHHHHHHH
Confidence 334555 48999999999999864
No 91
>PLN02177 glycerol-3-phosphate acyltransferase
Probab=99.23 E-value=1.9e-10 Score=96.36 Aligned_cols=94 Identities=22% Similarity=0.280 Sum_probs=72.0
Q ss_pred CChhHHHHHHHHHHCCCcEEEEcCCcHHhHHHHHHH-cCCCCCcEEecceeEecCCeeeeccCCCCCcCCCCHHHHHHHH
Q 029504 89 LSPGIDELVKKLKANNKNVYLISGGFRHMINPIASV-LGIPPENIFANQLLFKSSGEFLGFDANEPTSRSGGKAAAVQQI 167 (192)
Q Consensus 89 ~~~~~~e~l~~l~~~g~~~~IvS~~~~~~~~~~l~~-~g~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~K~~~l~~~ 167 (192)
+++.+.+.+ ++.|.. +|+|++++.+++.+++. +|++ .++++++.++.+|.++|...+.....+..|...+++.
T Consensus 111 l~~~a~~~~---~~~g~~-vvVSASp~~~Vepfa~~~LGid--~VIgTeLev~~~G~~TG~i~g~~~c~Ge~Kv~rl~~~ 184 (497)
T PLN02177 111 VHPETWRVF---NSFGKR-YIITASPRIMVEPFVKTFLGAD--KVLGTELEVSKSGRATGFMKKPGVLVGDHKRDAVLKE 184 (497)
T ss_pred cCHHHHHHH---HhCCCE-EEEECCcHHHHHHHHHHcCCCC--EEEecccEECcCCEEeeeecCCCCCccHHHHHHHHHH
Confidence 677766655 456654 99999999999999976 8998 8999999886689999976654233445688877733
Q ss_pred HHHcCC-ceEEEEeCCccchhhhcc
Q 029504 168 RKAHAY-KVLAMIGDGATDLEVSIF 191 (192)
Q Consensus 168 ~~~~g~-~~~~~iGDs~~Di~~a~~ 191 (192)
+|. ...+++|||.+|.+|+++
T Consensus 185 ---~g~~~~~~aYgDS~sD~plL~~ 206 (497)
T PLN02177 185 ---FGDALPDLGLGDRETDHDFMSI 206 (497)
T ss_pred ---hCCCCceEEEECCccHHHHHHh
Confidence 443 123999999999999875
No 92
>PRK03669 mannosyl-3-phosphoglycerate phosphatase; Reviewed
Probab=99.22 E-value=9.9e-11 Score=91.44 Aligned_cols=40 Identities=20% Similarity=0.187 Sum_probs=35.2
Q ss_pred CCcCCCCHHHHHHHHHHHcCC-----ceEEEEeCCccchhhhccC
Q 029504 153 PTSRSGGKAAAVQQIRKAHAY-----KVLAMIGDGATDLEVSIFI 192 (192)
Q Consensus 153 ~~~~~~~K~~~l~~~~~~~g~-----~~~~~iGDs~~Di~~a~~~ 192 (192)
.++.+.+|+.+++.+++.+|+ +++++||||.||++|.+++
T Consensus 181 i~~~g~sKg~al~~l~~~lgi~~~~~~~viafGDs~NDi~Ml~~a 225 (271)
T PRK03669 181 VLDASAGKDQAANWLIATYQQLSGTRPTTLGLGDGPNDAPLLDVM 225 (271)
T ss_pred EecCCCCHHHHHHHHHHHHHhhcCCCceEEEEcCCHHHHHHHHhC
Confidence 355668999999999999986 7899999999999999863
No 93
>PRK05446 imidazole glycerol-phosphate dehydratase/histidinol phosphatase; Provisional
Probab=99.21 E-value=6.1e-11 Score=95.23 Aligned_cols=94 Identities=17% Similarity=0.214 Sum_probs=65.5
Q ss_pred CCCChhHHHHHHHHHHCCCcEEEEcCC---------------cHHhHHHHHHHcCCCCCcEEecceeEecCCeeeeccCC
Q 029504 87 PRLSPGIDELVKKLKANNKNVYLISGG---------------FRHMINPIASVLGIPPENIFANQLLFKSSGEFLGFDAN 151 (192)
Q Consensus 87 ~~~~~~~~e~l~~l~~~g~~~~IvS~~---------------~~~~~~~~l~~~g~~~~~~~~~~~~~~~~g~~~~~~~~ 151 (192)
..++||+.++|++|+++|++++|+|+. ....+..+++.+++..+.++ +... .......
T Consensus 29 ~~l~pGV~e~L~~Lk~~G~kL~IvTNq~g~G~~~~~~~~l~~~~~~i~~iL~~~gl~fd~i~-----i~~~--~~sd~~~ 101 (354)
T PRK05446 29 LAFEPGVIPALLKLQKAGYKLVMVTNQDGLGTDSFPQEDFDPPHNLMMQIFESQGIKFDEVL-----ICPH--FPEDNCS 101 (354)
T ss_pred ceECcCHHHHHHHHHhCCCeEEEEECCccccCccccHHHHhhHHHHHHHHHHHcCCceeeEE-----EeCC--cCcccCC
Confidence 358999999999999999999999995 34456677888887521111 1100 0000111
Q ss_pred CCCcCCCCHHHHHHHHHHHcCC--ceEEEEeCCccchhhhcc
Q 029504 152 EPTSRSGGKAAAVQQIRKAHAY--KVLAMIGDGATDLEVSIF 191 (192)
Q Consensus 152 ~~~~~~~~K~~~l~~~~~~~g~--~~~~~iGDs~~Di~~a~~ 191 (192)
. ...|...+..+++++++ ++++||||+.+|+++|+.
T Consensus 102 ~----rKP~p~~l~~a~~~l~v~~~~svmIGDs~sDi~aAk~ 139 (354)
T PRK05446 102 C----RKPKTGLVEEYLAEGAIDLANSYVIGDRETDVQLAEN 139 (354)
T ss_pred C----CCCCHHHHHHHHHHcCCCcccEEEEcCCHHHHHHHHH
Confidence 1 12356788888888876 899999999999999864
No 94
>TIGR01668 YqeG_hyp_ppase HAD superfamily (subfamily IIIA) phosphatase, TIGR01668. This family consists of sequences from fungi, plants, cyanobacteria, gram-positive bacteria and Deinococcus. There is presently no characterization of any sequence in this family.
Probab=99.18 E-value=1e-10 Score=85.25 Aligned_cols=81 Identities=19% Similarity=0.312 Sum_probs=64.5
Q ss_pred CCChhHHHHHHHHHHCCCcEEEEcCCc-HHhHHHHHHHcCCCCCcEEecceeEecCCeeeeccCCCCCcCCCCHHHHHHH
Q 029504 88 RLSPGIDELVKKLKANNKNVYLISGGF-RHMINPIASVLGIPPENIFANQLLFKSSGEFLGFDANEPTSRSGGKAAAVQQ 166 (192)
Q Consensus 88 ~~~~~~~e~l~~l~~~g~~~~IvS~~~-~~~~~~~l~~~g~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~K~~~l~~ 166 (192)
.++|++.++|+.|+++|++++|+|++. ...+..+++.+|+. .++. ... .++..+..
T Consensus 43 ~~~pgv~e~L~~Lk~~g~~l~I~Sn~~~~~~~~~~~~~~gl~--~~~~-----------------~~K----P~p~~~~~ 99 (170)
T TIGR01668 43 EAYPALRDWIEELKAAGRKLLIVSNNAGEQRAKAVEKALGIP--VLPH-----------------AVK----PPGCAFRR 99 (170)
T ss_pred CcChhHHHHHHHHHHcCCEEEEEeCCchHHHHHHHHHHcCCE--EEcC-----------------CCC----CChHHHHH
Confidence 478999999999999999999999998 67777777887774 2110 011 24578888
Q ss_pred HHHHcCC--ceEEEEeCCc-cchhhhcc
Q 029504 167 IRKAHAY--KVLAMIGDGA-TDLEVSIF 191 (192)
Q Consensus 167 ~~~~~g~--~~~~~iGDs~-~Di~~a~~ 191 (192)
+++++|+ ++|++|||+. .|+.+|+.
T Consensus 100 ~l~~~~~~~~~~l~IGDs~~~Di~aA~~ 127 (170)
T TIGR01668 100 AHPEMGLTSEQVAVVGDRLFTDVMGGNR 127 (170)
T ss_pred HHHHcCCCHHHEEEECCcchHHHHHHHH
Confidence 8888887 8899999998 79999864
No 95
>TIGR01533 lipo_e_P4 5'-nucleotidase, lipoprotein e(P4) family. which in turn belongs to the haloacid dehalogenase (HAD) superfamily of aspartate-dependent hydrolases. Members are found on the outer membrane of Gram-negative bacteria and the cytoplasmic membrane of Gram-positive bacteria. Most members have classic lipoprotein signal sequences. A critical role of this 5'-nucleotidase in Haemophilus influenzae is the degradation of external riboside in order to allow transport into the cell. An earlier suggested role in hemin transport is no longer current. This enzyme may also have other physiologically significant roles.
Probab=99.18 E-value=4.2e-10 Score=87.10 Aligned_cols=127 Identities=13% Similarity=0.204 Sum_probs=84.3
Q ss_pred cCCcEEecCCCcccchhHh-hHHHHHHHHHHHHHHHhCCCccHHHHHHHHHhhcCCCHHHHHHHHHhCCCCCChhHHHHH
Q 029504 19 NGLPGCLASLFIENNSCLI-FLDGLTEFIFVFFARAMGGSVPFEEALAARLSLFKPSLSQVQDFLEKRPPRLSPGIDELV 97 (192)
Q Consensus 19 ~~k~iifD~~~~DGTL~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l 97 (192)
...+|+|| +|+|+++. ..... .. ..+ .. .+.+...++.......+.||+.+++
T Consensus 74 kp~AVV~D---IDeTvLdns~y~~~-----~~----~~~-~~-------------~~~~~w~~wv~~~~a~~ipGA~e~L 127 (266)
T TIGR01533 74 KKYAIVLD---LDETVLDNSPYQGY-----QV----LNN-KP-------------FDPETWDKWVQAAQAKPVAGALDFL 127 (266)
T ss_pred CCCEEEEe---CccccccChHHHHH-----Hh----cCC-Cc-------------CCHHHHHHHHHcCCCCcCccHHHHH
Confidence 35699999 99999987 33210 00 000 00 1223334555555567999999999
Q ss_pred HHHHHCCCcEEEEcCCcHH---hHHHHHHHcCCCCCcEEecceeEecCCeeeeccCCCCCcCCCCHHHHHHHHHHHcCCc
Q 029504 98 KKLKANNKNVYLISGGFRH---MINPIASVLGIPPENIFANQLLFKSSGEFLGFDANEPTSRSGGKAAAVQQIRKAHAYK 174 (192)
Q Consensus 98 ~~l~~~g~~~~IvS~~~~~---~~~~~l~~~g~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~K~~~l~~~~~~~g~~ 174 (192)
++++++|++++++|++... .....++.+|++ .+....+...+. ...|....+.+.+.++
T Consensus 128 ~~L~~~G~~v~iVTnR~~~~~~~T~~~Lkk~Gi~--~~~~d~lllr~~--------------~~~K~~rr~~I~~~y~-- 189 (266)
T TIGR01533 128 NYANSKGVKIFYVSNRSEKEKAATLKNLKRFGFP--QADEEHLLLKKD--------------KSSKESRRQKVQKDYE-- 189 (266)
T ss_pred HHHHHCCCeEEEEeCCCcchHHHHHHHHHHcCcC--CCCcceEEeCCC--------------CCCcHHHHHHHHhcCC--
Confidence 9999999999999998744 345777888997 333333322210 1257777888877665
Q ss_pred eEEEEeCCccchhhh
Q 029504 175 VLAMIGDGATDLEVS 189 (192)
Q Consensus 175 ~~~~iGDs~~Di~~a 189 (192)
-+++|||..+|+...
T Consensus 190 Ivl~vGD~~~Df~~~ 204 (266)
T TIGR01533 190 IVLLFGDNLLDFDDF 204 (266)
T ss_pred EEEEECCCHHHhhhh
Confidence 499999999999653
No 96
>TIGR00099 Cof-subfamily Cof subfamily of IIB subfamily of haloacid dehalogenase superfamily. The members of this subfamily are restricted almost exclusively to bacteria (one sequences from S. pombe scores above trusted, while another is between trusted and noise). It is notable that no archaea are found in this group, the closest relations to the archaea found here being two Deinococcus sequences.
Probab=99.17 E-value=2.9e-10 Score=88.00 Aligned_cols=38 Identities=26% Similarity=0.372 Sum_probs=34.1
Q ss_pred CcCCCCHHHHHHHHHHHcCC--ceEEEEeCCccchhhhcc
Q 029504 154 TSRSGGKAAAVQQIRKAHAY--KVLAMIGDGATDLEVSIF 191 (192)
Q Consensus 154 ~~~~~~K~~~l~~~~~~~g~--~~~~~iGDs~~Di~~a~~ 191 (192)
++.+.+|+.+++.+++.+|+ +++++||||.||++|++.
T Consensus 183 ~~~~~~K~~~i~~~~~~~~~~~~~~~~~GD~~nD~~m~~~ 222 (256)
T TIGR00099 183 TAKGVSKGSALQSLAEALGISLEDVIAFGDGMNDIEMLEA 222 (256)
T ss_pred cCCCCChHHHHHHHHHHcCCCHHHEEEeCCcHHhHHHHHh
Confidence 44557999999999999997 899999999999999875
No 97
>PF00702 Hydrolase: haloacid dehalogenase-like hydrolase; InterPro: IPR005834 This group of hydrolase enzymes is structurally different from the alpha/beta hydrolase family (abhydrolase). This group includes L-2-haloacid dehalogenase, epoxide hydrolases and phosphatases. The structure consists of two domains. One is an inserted four helix bundle, which is the least well conserved region of the alignment, between residues 16 and 96 of HAD1_PSESP. The rest of the fold is composed of the core alpha/beta domain.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 1TE2_A 3NAL_A 3NAM_A 3NAN_A 3A1D_B 3J09_A 3J08_A 2B8E_C 3A1E_A 2VOY_J ....
Probab=99.17 E-value=8.8e-11 Score=88.07 Aligned_cols=86 Identities=28% Similarity=0.374 Sum_probs=68.2
Q ss_pred CCChhHHHHHHHHHHCCCcEEEEcCCcHHhHHHHHHHcCCCCCcEEecceeEecCCeeeeccCCCCCcCCCCHHHHHHHH
Q 029504 88 RLSPGIDELVKKLKANNKNVYLISGGFRHMINPIASVLGIPPENIFANQLLFKSSGEFLGFDANEPTSRSGGKAAAVQQI 167 (192)
Q Consensus 88 ~~~~~~~e~l~~l~~~g~~~~IvS~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~K~~~l~~~ 167 (192)
.++|++.++|+.|++.|++++|+|++....+..+++.+|+....+++... .+|..| .+..+
T Consensus 127 ~~~~~~~~~l~~L~~~Gi~~~i~TGD~~~~a~~~~~~lgi~~~~v~a~~~-----------------~kP~~k--~~~~~ 187 (215)
T PF00702_consen 127 PLRPGAKEALQELKEAGIKVAILTGDNESTASAIAKQLGIFDSIVFARVI-----------------GKPEPK--IFLRI 187 (215)
T ss_dssp EBHTTHHHHHHHHHHTTEEEEEEESSEHHHHHHHHHHTTSCSEEEEESHE-----------------TTTHHH--HHHHH
T ss_pred cchhhhhhhhhhhhccCcceeeeecccccccccccccccccccccccccc-----------------ccccch--hHHHH
Confidence 58999999999999999999999999999999999999996322555331 112234 55666
Q ss_pred HHHcCC--ceEEEEeCCccchhhhccC
Q 029504 168 RKAHAY--KVLAMIGDGATDLEVSIFI 192 (192)
Q Consensus 168 ~~~~g~--~~~~~iGDs~~Di~~a~~~ 192 (192)
+++++. .+|+||||+.||++|++.+
T Consensus 188 i~~l~~~~~~v~~vGDg~nD~~al~~A 214 (215)
T PF00702_consen 188 IKELQVKPGEVAMVGDGVNDAPALKAA 214 (215)
T ss_dssp HHHHTCTGGGEEEEESSGGHHHHHHHS
T ss_pred HHHHhcCCCEEEEEccCHHHHHHHHhC
Confidence 666664 6899999999999999853
No 98
>TIGR01686 FkbH FkbH-like domain. The C-terminal portion of this domain is unique to this family (by BLAST).
Probab=99.15 E-value=1.3e-10 Score=92.95 Aligned_cols=85 Identities=16% Similarity=0.142 Sum_probs=71.3
Q ss_pred CCChhHHHHHHHHHHCCCcEEEEcCCcHHhHHHHHHH----cCCCCCcEEecceeEecCCeeeeccCCCCCcCCCCHHHH
Q 029504 88 RLSPGIDELVKKLKANNKNVYLISGGFRHMINPIASV----LGIPPENIFANQLLFKSSGEFLGFDANEPTSRSGGKAAA 163 (192)
Q Consensus 88 ~~~~~~~e~l~~l~~~g~~~~IvS~~~~~~~~~~l~~----~g~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~K~~~ 163 (192)
.+++|+.++|+.|+++|+.++|+|++....+..+++. +++. ++|.... . + ..+|...
T Consensus 31 ~~~~~~~e~L~~L~~~Gi~lai~S~n~~~~a~~~l~~~~~~~~~~--~~f~~~~-~-------~---------~~pk~~~ 91 (320)
T TIGR01686 31 PLHKTLQEKIKTLKKQGFLLALASKNDEDDAKKVFERRKDFILQA--EDFDARS-I-------N---------WGPKSES 91 (320)
T ss_pred ccHHHHHHHHHHHHhCCCEEEEEcCCCHHHHHHHHHhCccccCcH--HHeeEEE-E-------e---------cCchHHH
Confidence 3689999999999999999999999999999999998 7776 5565431 0 0 1258899
Q ss_pred HHHHHHHcCC--ceEEEEeCCccchhhhcc
Q 029504 164 VQQIRKAHAY--KVLAMIGDGATDLEVSIF 191 (192)
Q Consensus 164 l~~~~~~~g~--~~~~~iGDs~~Di~~a~~ 191 (192)
+..+++++|+ +++++|||+..|+.+++.
T Consensus 92 i~~~~~~l~i~~~~~vfidD~~~d~~~~~~ 121 (320)
T TIGR01686 92 LRKIAKKLNLGTDSFLFIDDNPAERANVKI 121 (320)
T ss_pred HHHHHHHhCCCcCcEEEECCCHHHHHHHHH
Confidence 9999999987 999999999999998763
No 99
>PRK00192 mannosyl-3-phosphoglycerate phosphatase; Reviewed
Probab=99.15 E-value=3.8e-10 Score=88.25 Aligned_cols=38 Identities=18% Similarity=0.162 Sum_probs=32.8
Q ss_pred CcCCCCHHHHHHHHHHHcCC---ceEEEEeCCccchhhhccC
Q 029504 154 TSRSGGKAAAVQQIRKAHAY---KVLAMIGDGATDLEVSIFI 192 (192)
Q Consensus 154 ~~~~~~K~~~l~~~~~~~g~---~~~~~iGDs~~Di~~a~~~ 192 (192)
.+.+ +|+.+++.+++.+|+ +++++||||.||++|++++
T Consensus 186 ~~~~-~Kg~al~~l~~~~~i~~~~~v~~~GDs~NDi~m~~~a 226 (273)
T PRK00192 186 LGGG-DKGKAVRWLKELYRRQDGVETIALGDSPNDLPMLEAA 226 (273)
T ss_pred eCCC-CHHHHHHHHHHHHhccCCceEEEEcCChhhHHHHHhC
Confidence 4455 899999999998875 7899999999999999863
No 100
>PRK12702 mannosyl-3-phosphoglycerate phosphatase; Reviewed
Probab=99.12 E-value=8.3e-10 Score=85.79 Aligned_cols=35 Identities=23% Similarity=0.081 Sum_probs=29.9
Q ss_pred CCCHHHHHHHHHHHcCCc----eEEEEeCCccchhhhcc
Q 029504 157 SGGKAAAVQQIRKAHAYK----VLAMIGDGATDLEVSIF 191 (192)
Q Consensus 157 ~~~K~~~l~~~~~~~g~~----~~~~iGDs~~Di~~a~~ 191 (192)
..+|+.+++.+.+.|... .++++|||.||++|+++
T Consensus 206 ~~dKg~A~~~L~~~y~~~~~~~~tiaLGDspND~~mLe~ 244 (302)
T PRK12702 206 SLPGEQAVQLLLDCYQRHLGPIKALGIGCSPPDLAFLRW 244 (302)
T ss_pred CCCHHHHHHHHHHHHHhccCCceEEEecCChhhHHHHHh
Confidence 458999999998877642 79999999999999986
No 101
>TIGR02463 MPGP_rel mannosyl-3-phosphoglycerate phosphatase-related protein. This family consists of members of the HAD superfamily, subfamily IIB. All members are closely related to mannosyl-3-phosphoglycerate phosphatase, the second enzyme in a two-step pathway for biosynthesis of mannosylglycerate, a compatible solute present in some thermophiles and in Dehalococcoides ethenogenes. However, members of this family are separable in a neighbor-joining tree constructed from a multiple sequence alignment and are found only in mesophiles that lack the companion mannosyl-3-phosphoglycerate synthase (TIGR02460). Members of this family are like to act on a compound related to yet distinct from mannosyl-3-phosphoglycerate.
Probab=99.11 E-value=8.2e-10 Score=83.63 Aligned_cols=40 Identities=20% Similarity=0.182 Sum_probs=35.3
Q ss_pred CCcCCCCHHHHHHHHHHHcCC--ceEEEEeCCccchhhhccC
Q 029504 153 PTSRSGGKAAAVQQIRKAHAY--KVLAMIGDGATDLEVSIFI 192 (192)
Q Consensus 153 ~~~~~~~K~~~l~~~~~~~g~--~~~~~iGDs~~Di~~a~~~ 192 (192)
..+.+.+|+.+++.+++.+|+ +++++||||.||++|++++
T Consensus 173 i~~~~~~Kg~al~~l~~~lgi~~~~vi~~GD~~NDi~ml~~a 214 (221)
T TIGR02463 173 VLGASSSKGKAANWLKATYNQPDVKTLGLGDGPNDLPLLEVA 214 (221)
T ss_pred EecCCCCHHHHHHHHHHHhCCCCCcEEEECCCHHHHHHHHhC
Confidence 355567999999999999998 8899999999999999864
No 102
>COG1778 Low specificity phosphatase (HAD superfamily) [General function prediction only]
Probab=99.07 E-value=1.1e-10 Score=81.60 Aligned_cols=72 Identities=26% Similarity=0.331 Sum_probs=63.1
Q ss_pred HHHHHHHCCCcEEEEcCCcHHhHHHHHHHcCCCCCcEEecceeEecCCeeeeccCCCCCcCCCCHHHHHHHHHHHcCC--
Q 029504 96 LVKKLKANNKNVYLISGGFRHMINPIASVLGIPPENIFANQLLFKSSGEFLGFDANEPTSRSGGKAAAVQQIRKAHAY-- 173 (192)
Q Consensus 96 ~l~~l~~~g~~~~IvS~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~K~~~l~~~~~~~g~-- 173 (192)
-|+.|.+.|++++|+|+.....++.-++.+|+. .++--. ..|..++.++++++++
T Consensus 43 Gik~l~~~Gi~vAIITGr~s~ive~Ra~~LGI~--~~~qG~---------------------~dK~~a~~~L~~~~~l~~ 99 (170)
T COG1778 43 GIKLLLKSGIKVAIITGRDSPIVEKRAKDLGIK--HLYQGI---------------------SDKLAAFEELLKKLNLDP 99 (170)
T ss_pred HHHHHHHcCCeEEEEeCCCCHHHHHHHHHcCCc--eeeech---------------------HhHHHHHHHHHHHhCCCH
Confidence 367788999999999999999999999999997 444421 3699999999999998
Q ss_pred ceEEEEeCCccchhhhc
Q 029504 174 KVLAMIGDGATDLEVSI 190 (192)
Q Consensus 174 ~~~~~iGDs~~Di~~a~ 190 (192)
++|.|+||-.||+++.+
T Consensus 100 e~~ayiGDD~~Dlpvm~ 116 (170)
T COG1778 100 EEVAYVGDDLVDLPVME 116 (170)
T ss_pred HHhhhhcCccccHHHHH
Confidence 99999999999999865
No 103
>TIGR01485 SPP_plant-cyano sucrose-6F-phosphate phosphohydrolase. Sucrose phosphate synthase (SPS), the prior step in the biosynthesis of sucrose contains a domain which exhibits considerable similarity to SPP albeit without conservation of the catalytic residues. The catalytic machinery of the synthase resides in another domain. It seems likely that the phosphatase-like domain is involved in substrate binding, possibly binding both substrates in a "product-like" orientation prior to ligation by the synthase catalytic domain.
Probab=99.06 E-value=9.2e-10 Score=84.96 Aligned_cols=39 Identities=23% Similarity=0.291 Sum_probs=34.5
Q ss_pred CCcCCCCHHHHHHHHHHHcCC--ceEEEEeCCccchhhhcc
Q 029504 153 PTSRSGGKAAAVQQIRKAHAY--KVLAMIGDGATDLEVSIF 191 (192)
Q Consensus 153 ~~~~~~~K~~~l~~~~~~~g~--~~~~~iGDs~~Di~~a~~ 191 (192)
.++.+.+|+.+++.+++.+|+ ++|++|||+.||++|++.
T Consensus 161 i~~~~~~K~~al~~l~~~~~i~~~~~i~~GD~~ND~~ml~~ 201 (249)
T TIGR01485 161 ILPQGSGKGQALQYLLQKLAMEPSQTLVCGDSGNDIELFEI 201 (249)
T ss_pred EEeCCCChHHHHHHHHHHcCCCccCEEEEECChhHHHHHHc
Confidence 355567999999999999997 899999999999999875
No 104
>PF05822 UMPH-1: Pyrimidine 5'-nucleotidase (UMPH-1); InterPro: IPR006434 This family is a small group of metazoan sequences with sequences from Arabidopsis thaliana (Mouse-ear cress) and rice. The sequences represent pyrimidine 5-nucleotidases, apparently in reference to HSPC233, the Homo sapiens (Human) homologue []. The structure of mouse sequence has been reported []. This group of sequences was originally found during searches for members of the haloacid dehalogenase (HAD) superfamily (IPR005834 from INTERPRO). All of the conserved catalytic motifs [] are found. The placement of the variable domain between motifs 1 and 2 indicates membership in subfamily I of the superfamily, but these sequences are sufficiently different from any of the branches of that subfamily (IA-ID) as to constitute a separate branch to now be called IE. Considering that the closest identifiable hit outside of the noise range is to a phosphoserine phosphatase, this group may be considered to be most closely allied to subfamily IB.; GO: 0000287 magnesium ion binding, 0008253 5'-nucleotidase activity, 0005737 cytoplasm; PDB: 2BDU_B 2G07_A 2G06_A 2G0A_A 2Q4T_A 2G09_A 2G08_A 2VKQ_A 2CN1_A 2JGA_A.
Probab=99.04 E-value=9.9e-09 Score=77.97 Aligned_cols=115 Identities=20% Similarity=0.351 Sum_probs=80.2
Q ss_pred CHHHHHHHHHhCCCCCChhHHHHHHHHHHCCCcEEEEcCCcHHhHHHHHHHcCCCC--CcEEecceeEecCCeeeeccCC
Q 029504 74 SLSQVQDFLEKRPPRLSPGIDELVKKLKANNKNVYLISGGFRHMINPIASVLGIPP--ENIFANQLLFKSSGEFLGFDAN 151 (192)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~~~e~l~~l~~~g~~~~IvS~~~~~~~~~~l~~~g~~~--~~~~~~~~~~~~~g~~~~~~~~ 151 (192)
....+.+.+++....+++|+.++++.|++.++|+.|.|+|-...++.++++.+... ..+++|.+.++++|.+.|+.-
T Consensus 76 ~k~~i~~~V~~s~i~LRdg~~~~f~~L~~~~IP~lIFSAGlgdvI~~vL~q~~~~~~Nv~VvSN~M~Fd~~g~l~gF~~- 154 (246)
T PF05822_consen 76 TKSEIEEAVKESDIMLRDGVEEFFDKLEEHNIPLLIFSAGLGDVIEEVLRQAGVFHPNVKVVSNFMDFDEDGVLVGFKG- 154 (246)
T ss_dssp BGGGHHHHHHCS---B-BTHHHHHHHHHCTT--EEEEEEEEHHHHHHHHHHTT--BTTEEEEEE-EEE-TTSBEEEE-S-
T ss_pred CHHHHHHHHHhcchhhhcCHHHHHHHHHhcCCCEEEEeCCcHHHHHHHHHHcCCCCCCeEEEeeeEEECCcceEeecCC-
Confidence 35567888888767899999999999999999999999999999999999877544 368899999998999988533
Q ss_pred CCCcCCCCHHHHHH---HHHHHcCC-ceEEEEeCCccchhhhc
Q 029504 152 EPTSRSGGKAAAVQ---QIRKAHAY-KVLAMIGDGATDLEVSI 190 (192)
Q Consensus 152 ~~~~~~~~K~~~l~---~~~~~~g~-~~~~~iGDs~~Di~~a~ 190 (192)
|..+...|-.... .+.++..- .+++..|||..|+.|+.
T Consensus 155 -~lIH~~NKn~~~l~~~~~~~~~~~R~NvlLlGDslgD~~Ma~ 196 (246)
T PF05822_consen 155 -PLIHTFNKNESALEDSPYFKQLKKRTNVLLLGDSLGDLHMAD 196 (246)
T ss_dssp -S---TT-HHHHHHTTHHHHHCTTT--EEEEEESSSGGGGTTT
T ss_pred -CceEEeeCCcccccCchHHHHhccCCcEEEecCccCChHhhc
Confidence 4455556755433 23333333 78999999999999985
No 105
>TIGR02461 osmo_MPG_phos mannosyl-3-phosphoglycerate phosphatase. Members of this family are mannosyl-3-phosphoglycerate phosphatase (EC 3.1.3.70). It acts sequentially after mannosyl-3-phosphoglycerate synthase (EC 2.4.1.217) in a two-step pathway of biosynthesis of the compatible solute mannosylglycerate, a typical osmolyte of thermophiles.
Probab=99.01 E-value=5.7e-09 Score=79.40 Aligned_cols=36 Identities=14% Similarity=0.196 Sum_probs=31.6
Q ss_pred CCCHHHHHHHHHHHcCC----ceEEEEeCCccchhhhccC
Q 029504 157 SGGKAAAVQQIRKAHAY----KVLAMIGDGATDLEVSIFI 192 (192)
Q Consensus 157 ~~~K~~~l~~~~~~~g~----~~~~~iGDs~~Di~~a~~~ 192 (192)
+.+|+.+++.+++.+++ ++|++|||+.||++|++++
T Consensus 179 ~~sK~~al~~l~~~~~~~~~~~~~i~~GD~~nD~~ml~~a 218 (225)
T TIGR02461 179 GSDKGKAIKRLLDLYKLRPGAIESVGLGDSENDFPMFEVV 218 (225)
T ss_pred CCCHHHHHHHHHHHhccccCcccEEEEcCCHHHHHHHHhC
Confidence 57999999999988864 5799999999999999863
No 106
>TIGR01512 ATPase-IB2_Cd heavy metal-(Cd/Co/Hg/Pb/Zn)-translocating P-type ATPase. .
Probab=99.01 E-value=1e-09 Score=93.45 Aligned_cols=82 Identities=28% Similarity=0.400 Sum_probs=70.5
Q ss_pred CCCChhHHHHHHHHHHCCC-cEEEEcCCcHHhHHHHHHHcCCCCCcEEecceeEecCCeeeeccCCCCCcCCCCHHHHHH
Q 029504 87 PRLSPGIDELVKKLKANNK-NVYLISGGFRHMINPIASVLGIPPENIFANQLLFKSSGEFLGFDANEPTSRSGGKAAAVQ 165 (192)
Q Consensus 87 ~~~~~~~~e~l~~l~~~g~-~~~IvS~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~K~~~l~ 165 (192)
..++||+.+.+++|+++|+ +++|+|++....++.+++++|++ ++|+... +.+|...++
T Consensus 361 d~l~~~~~e~i~~L~~~Gi~~v~vvTgd~~~~a~~i~~~lgi~--~~f~~~~-------------------p~~K~~~i~ 419 (536)
T TIGR01512 361 DEPRPDAAEAIAELKALGIEKVVMLTGDRRAVAERVARELGID--EVHAELL-------------------PEDKLEIVK 419 (536)
T ss_pred ccchHHHHHHHHHHHHcCCCcEEEEcCCCHHHHHHHHHHcCCh--hhhhccC-------------------cHHHHHHHH
Confidence 3689999999999999999 99999999999999999999997 5655321 246889899
Q ss_pred HHHHHcCCceEEEEeCCccchhhhcc
Q 029504 166 QIRKAHAYKVLAMIGDGATDLEVSIF 191 (192)
Q Consensus 166 ~~~~~~g~~~~~~iGDs~~Di~~a~~ 191 (192)
++..+. ++++|+||+.||+++++.
T Consensus 420 ~l~~~~--~~v~~vGDg~nD~~al~~ 443 (536)
T TIGR01512 420 ELREKY--GPVAMVGDGINDAPALAA 443 (536)
T ss_pred HHHhcC--CEEEEEeCCHHHHHHHHh
Confidence 887654 599999999999999875
No 107
>COG2217 ZntA Cation transport ATPase [Inorganic ion transport and metabolism]
Probab=99.00 E-value=1.2e-09 Score=94.66 Aligned_cols=82 Identities=30% Similarity=0.432 Sum_probs=73.1
Q ss_pred CCCChhHHHHHHHHHHCCCcEEEEcCCcHHhHHHHHHHcCCCCCcEEecceeEecCCeeeeccCCCCCcCCCCHHHHHHH
Q 029504 87 PRLSPGIDELVKKLKANNKNVYLISGGFRHMINPIASVLGIPPENIFANQLLFKSSGEFLGFDANEPTSRSGGKAAAVQQ 166 (192)
Q Consensus 87 ~~~~~~~~e~l~~l~~~g~~~~IvS~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~K~~~l~~ 166 (192)
..++|++++.++.|++.|+++.++|++.+..++.+.+.+|++ ++++..+ |.+|.+.+++
T Consensus 536 D~~R~~a~~aI~~L~~~Gi~~~mLTGDn~~~A~~iA~~lGId--~v~Aell-------------------PedK~~~V~~ 594 (713)
T COG2217 536 DELRPDAKEAIAALKALGIKVVMLTGDNRRTAEAIAKELGID--EVRAELL-------------------PEDKAEIVRE 594 (713)
T ss_pred CCCChhHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHcChH--hheccCC-------------------cHHHHHHHHH
Confidence 468999999999999999999999999999999999999998 7777543 4689999999
Q ss_pred HHHHcCCceEEEEeCCccchhhhcc
Q 029504 167 IRKAHAYKVLAMIGDGATDLEVSIF 191 (192)
Q Consensus 167 ~~~~~g~~~~~~iGDs~~Di~~a~~ 191 (192)
+.++. ..+.|||||.||.+++..
T Consensus 595 l~~~g--~~VamVGDGINDAPALA~ 617 (713)
T COG2217 595 LQAEG--RKVAMVGDGINDAPALAA 617 (713)
T ss_pred HHhcC--CEEEEEeCCchhHHHHhh
Confidence 99763 489999999999998764
No 108
>TIGR01525 ATPase-IB_hvy heavy metal translocating P-type ATPase. This alignment encompasses two equivalog models for the copper and cadmium-type heavy metal transporting P-type ATPases (TIGR01511 and TIGR01512) as well as those species which score ambiguously between both models. For more comments and references, see the files on TIGR01511 and 01512.
Probab=99.00 E-value=1.3e-09 Score=93.18 Aligned_cols=82 Identities=28% Similarity=0.442 Sum_probs=70.4
Q ss_pred CCCChhHHHHHHHHHHCC-CcEEEEcCCcHHhHHHHHHHcCCCCCcEEecceeEecCCeeeeccCCCCCcCCCCHHHHHH
Q 029504 87 PRLSPGIDELVKKLKANN-KNVYLISGGFRHMINPIASVLGIPPENIFANQLLFKSSGEFLGFDANEPTSRSGGKAAAVQ 165 (192)
Q Consensus 87 ~~~~~~~~e~l~~l~~~g-~~~~IvS~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~K~~~l~ 165 (192)
..++||+.+++++|+++| ++++|+|++....++.+++++|++ ++|+... +.+|.+.++
T Consensus 383 d~~~~g~~e~l~~L~~~g~i~v~ivTgd~~~~a~~i~~~lgi~--~~f~~~~-------------------p~~K~~~v~ 441 (556)
T TIGR01525 383 DQLRPEAKEAIAALKRAGGIKLVMLTGDNRSAAEAVAAELGID--EVHAELL-------------------PEDKLAIVK 441 (556)
T ss_pred ccchHhHHHHHHHHHHcCCCeEEEEeCCCHHHHHHHHHHhCCC--eeeccCC-------------------HHHHHHHHH
Confidence 368999999999999999 999999999999999999999997 6666321 236888888
Q ss_pred HHHHHcCCceEEEEeCCccchhhhcc
Q 029504 166 QIRKAHAYKVLAMIGDGATDLEVSIF 191 (192)
Q Consensus 166 ~~~~~~g~~~~~~iGDs~~Di~~a~~ 191 (192)
++.... .+|+|+||+.||+++++.
T Consensus 442 ~l~~~~--~~v~~vGDg~nD~~al~~ 465 (556)
T TIGR01525 442 ELQEEG--GVVAMVGDGINDAPALAA 465 (556)
T ss_pred HHHHcC--CEEEEEECChhHHHHHhh
Confidence 887643 489999999999999875
No 109
>TIGR01484 HAD-SF-IIB HAD-superfamily hydrolase, subfamily IIB. The IIB subfamily consists of Trehalose-6-phosphatase (TIGR00685), plant and cyanobacterial Sucrose-phosphatase and a closely related group of bacterial and archaeal sequences, eukaryotic phosphomannomutase (pfam03332), a large subfamily ("Cof-like hydrolases", TIGR00099) containing many closely related bacterial sequences, a hypothetical equivalog containing the E. coli YedP protein, as well as two small clusters containing sequences whose relationship to the other groups is unclear.
Probab=98.97 E-value=4.3e-09 Score=78.70 Aligned_cols=38 Identities=21% Similarity=0.175 Sum_probs=34.0
Q ss_pred CcCCCCHHHHHHHHHHHcCC--ceEEEEeCCccchhhhcc
Q 029504 154 TSRSGGKAAAVQQIRKAHAY--KVLAMIGDGATDLEVSIF 191 (192)
Q Consensus 154 ~~~~~~K~~~l~~~~~~~g~--~~~~~iGDs~~Di~~a~~ 191 (192)
.+.+.+|+.+++.+++++++ +++++|||+.||++|++.
T Consensus 158 ~p~~~~K~~~~~~~~~~~~~~~~~~~~~GD~~nD~~~~~~ 197 (204)
T TIGR01484 158 LPAGVDKGSALQALLKELNGKRDEILAFGDSGNDEEMFEV 197 (204)
T ss_pred ecCCCChHHHHHHHHHHhCCCHHHEEEEcCCHHHHHHHHH
Confidence 45557999999999999987 889999999999999875
No 110
>PHA02530 pseT polynucleotide kinase; Provisional
Probab=98.96 E-value=1.5e-09 Score=86.01 Aligned_cols=98 Identities=16% Similarity=0.132 Sum_probs=68.3
Q ss_pred CCCChhHHHHHHHHHHCCCcEEEEcCCcHHhHHHHHHHcCCCCCc-EEecceeEecCCeeeeccCCCCCcCCCCHHHHHH
Q 029504 87 PRLSPGIDELVKKLKANNKNVYLISGGFRHMINPIASVLGIPPEN-IFANQLLFKSSGEFLGFDANEPTSRSGGKAAAVQ 165 (192)
Q Consensus 87 ~~~~~~~~e~l~~l~~~g~~~~IvS~~~~~~~~~~l~~~g~~~~~-~~~~~~~~~~~g~~~~~~~~~~~~~~~~K~~~l~ 165 (192)
..++|++.++++.|+++|++++|+|+++....+..++.+++. . +|......+....+.. ......+ .+..+.
T Consensus 186 ~~~~~~~~~~l~~l~~~g~~i~i~T~r~~~~~~~~l~~l~~~--~~~f~~i~~~~~~~~~~~-~~~~~kp----~p~~~~ 258 (300)
T PHA02530 186 DKPNPMVVELVKMYKAAGYEIIVVSGRDGVCEEDTVEWLRQT--DIWFDDLIGRPPDMHFQR-EQGDKRP----DDVVKE 258 (300)
T ss_pred CCCChhHHHHHHHHHhCCCEEEEEeCCChhhHHHHHHHHHHc--CCchhhhhCCcchhhhcc-cCCCCCC----cHHHHH
Confidence 458999999999999999999999999999999999999887 4 4543332210000000 1111222 344555
Q ss_pred HHHHHcCC---ceEEEEeCCccchhhhcc
Q 029504 166 QIRKAHAY---KVLAMIGDGATDLEVSIF 191 (192)
Q Consensus 166 ~~~~~~g~---~~~~~iGDs~~Di~~a~~ 191 (192)
+.+++++. ++|+||||+.+|+.+++-
T Consensus 259 ~~l~~~~~~~~~~~~~vgD~~~d~~~a~~ 287 (300)
T PHA02530 259 EIFWEKIAPKYDVLLAVDDRDQVVDMWRR 287 (300)
T ss_pred HHHHHHhccCceEEEEEcCcHHHHHHHHH
Confidence 55555443 789999999999999863
No 111
>TIGR01663 PNK-3'Pase polynucleotide 5'-kinase 3'-phosphatase. Note that the EC number for the kinase function is: 2.7.1.78
Probab=98.96 E-value=2e-09 Score=90.66 Aligned_cols=85 Identities=18% Similarity=0.214 Sum_probs=62.1
Q ss_pred CChhHHHHHHHHHHCCCcEEEEcCCcH------------HhHHHHHHHcCCCCCcEEecceeEecCCeeeeccCCCCCcC
Q 029504 89 LSPGIDELVKKLKANNKNVYLISGGFR------------HMINPIASVLGIPPENIFANQLLFKSSGEFLGFDANEPTSR 156 (192)
Q Consensus 89 ~~~~~~e~l~~l~~~g~~~~IvS~~~~------------~~~~~~l~~~g~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 156 (192)
++||+.+.|+.|++.|++++|+||... ..++.+++.+|++..-+++. . .....+
T Consensus 198 l~pgV~e~L~~L~~~Gy~IvIvTNQ~gI~~G~~~~~~~~~ki~~iL~~lgipfdviia~------~------~~~~RK-- 263 (526)
T TIGR01663 198 IFPEIPEKLKELEADGFKICIFTNQGGIARGKINADDFKAKIEAIVAKLGVPFQVFIAI------G------AGFYRK-- 263 (526)
T ss_pred cccCHHHHHHHHHHCCCEEEEEECCcccccCcccHHHHHHHHHHHHHHcCCceEEEEeC------C------CCCCCC--
Confidence 689999999999999999999999765 35788899999863211111 0 011111
Q ss_pred CCCHHHHHHHHHHHcC----C--ceEEEEeCCccchhhh
Q 029504 157 SGGKAAAVQQIRKAHA----Y--KVLAMIGDGATDLEVS 189 (192)
Q Consensus 157 ~~~K~~~l~~~~~~~g----~--~~~~~iGDs~~Di~~a 189 (192)
.+...+..++++++ + ++++||||+.+|+..+
T Consensus 264 --P~pGm~~~a~~~~~~~~~Id~~~S~~VGDaagr~~~g 300 (526)
T TIGR01663 264 --PLTGMWDHLKEEANDGTEIQEDDCFFVGDAAGRPANG 300 (526)
T ss_pred --CCHHHHHHHHHhcCcccCCCHHHeEEeCCcccchHHH
Confidence 24567788877774 4 8999999999998764
No 112
>TIGR01511 ATPase-IB1_Cu copper-(or silver)-translocating P-type ATPase. One member from Halobacterium is annotated as "molybdenum-binding protein" although no evidence can be found for this classification.
Probab=98.95 E-value=3.7e-09 Score=90.51 Aligned_cols=81 Identities=27% Similarity=0.441 Sum_probs=68.5
Q ss_pred CCCChhHHHHHHHHHHCCCcEEEEcCCcHHhHHHHHHHcCCCCCcEEecceeEecCCeeeeccCCCCCcCCCCHHHHHHH
Q 029504 87 PRLSPGIDELVKKLKANNKNVYLISGGFRHMINPIASVLGIPPENIFANQLLFKSSGEFLGFDANEPTSRSGGKAAAVQQ 166 (192)
Q Consensus 87 ~~~~~~~~e~l~~l~~~g~~~~IvS~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~K~~~l~~ 166 (192)
..++|++.+++++|+++|++++|+|++....++.+++.+|++ +++.. .|.+|...+++
T Consensus 404 d~l~~~a~e~i~~Lk~~Gi~v~ilSgd~~~~a~~ia~~lgi~---~~~~~-------------------~p~~K~~~v~~ 461 (562)
T TIGR01511 404 DQLRPEAKEVIQALKRRGIEPVMLTGDNRKTAKAVAKELGIN---VRAEV-------------------LPDDKAALIKE 461 (562)
T ss_pred ccccHHHHHHHHHHHHcCCeEEEEcCCCHHHHHHHHHHcCCc---EEccC-------------------ChHHHHHHHHH
Confidence 468999999999999999999999999999999999999995 33321 12468888888
Q ss_pred HHHHcCCceEEEEeCCccchhhhcc
Q 029504 167 IRKAHAYKVLAMIGDGATDLEVSIF 191 (192)
Q Consensus 167 ~~~~~g~~~~~~iGDs~~Di~~a~~ 191 (192)
+.++. ++|+|||||.||+++++.
T Consensus 462 l~~~~--~~v~~VGDg~nD~~al~~ 484 (562)
T TIGR01511 462 LQEKG--RVVAMVGDGINDAPALAQ 484 (562)
T ss_pred HHHcC--CEEEEEeCCCccHHHHhh
Confidence 87642 589999999999999875
No 113
>KOG2914 consensus Predicted haloacid-halidohydrolase and related hydrolases [General function prediction only]
Probab=98.94 E-value=3.1e-08 Score=74.59 Aligned_cols=93 Identities=17% Similarity=0.137 Sum_probs=65.4
Q ss_pred CCCChhHHHHHHHHHHCCCcEEEEcCCcHHhHHHHHHHcC-CCCCcEEecceeEecCCeeeeccCCCCCcCCCCHHHHHH
Q 029504 87 PRLSPGIDELVKKLKANNKNVYLISGGFRHMINPIASVLG-IPPENIFANQLLFKSSGEFLGFDANEPTSRSGGKAAAVQ 165 (192)
Q Consensus 87 ~~~~~~~~e~l~~l~~~g~~~~IvS~~~~~~~~~~l~~~g-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~K~~~l~ 165 (192)
..+.||+.++++.|+.+|++++++|++.+...+...++++ +- ..|...+..+ +..+.+.+|+| ....
T Consensus 91 ~~~~PGa~kLv~~L~~~gip~alat~s~~~~~~~k~~~~~~~~--~~f~~~v~~d------~~~v~~gKP~P----di~l 158 (222)
T KOG2914|consen 91 SILMPGAEKLVNHLKNNGIPVALATSSTSASFELKISRHEDIF--KNFSHVVLGD------DPEVKNGKPDP----DIYL 158 (222)
T ss_pred cccCCcHHHHHHHHHhCCCCeeEEecCCcccHHHHHHHhhHHH--HhcCCCeecC------CccccCCCCCc----hHHH
Confidence 4688999999999999999999999998888877777665 32 3344443321 11222223333 4455
Q ss_pred HHHHHcCC---ceEEEEeCCccchhhhcc
Q 029504 166 QIRKAHAY---KVLAMIGDGATDLEVSIF 191 (192)
Q Consensus 166 ~~~~~~g~---~~~~~iGDs~~Di~~a~~ 191 (192)
...+.+|. +.|++|+|+++.+.+++.
T Consensus 159 ~A~~~l~~~~~~k~lVfeds~~Gv~aa~a 187 (222)
T KOG2914|consen 159 KAAKRLGVPPPSKCLVFEDSPVGVQAAKA 187 (222)
T ss_pred HHHHhcCCCCccceEEECCCHHHHHHHHh
Confidence 55555663 789999999999999864
No 114
>PRK10187 trehalose-6-phosphate phosphatase; Provisional
Probab=98.94 E-value=6.3e-09 Score=81.10 Aligned_cols=38 Identities=18% Similarity=0.283 Sum_probs=33.7
Q ss_pred CcCCCCHHHHHHHHHHHcCC--ceEEEEeCCccchhhhcc
Q 029504 154 TSRSGGKAAAVQQIRKAHAY--KVLAMIGDGATDLEVSIF 191 (192)
Q Consensus 154 ~~~~~~K~~~l~~~~~~~g~--~~~~~iGDs~~Di~~a~~ 191 (192)
.+.+.+|+.+++.+++.+|+ +++++|||+.||++|.++
T Consensus 169 ~p~g~~Kg~al~~ll~~~~~~~~~v~~~GD~~nD~~mf~~ 208 (266)
T PRK10187 169 KPRGTNKGEAIAAFMQEAPFAGRTPVFVGDDLTDEAGFAV 208 (266)
T ss_pred eCCCCCHHHHHHHHHHhcCCCCCeEEEEcCCccHHHHHHH
Confidence 45567999999999999986 889999999999999875
No 115
>smart00577 CPDc catalytic domain of ctd-like phosphatases.
Probab=98.93 E-value=1.8e-09 Score=76.87 Aligned_cols=87 Identities=16% Similarity=0.214 Sum_probs=62.8
Q ss_pred CCCChhHHHHHHHHHHCCCcEEEEcCCcHHhHHHHHHHcCCCCCcEEecceeEecCCeeeeccCCCCCcCCCCHHHHHHH
Q 029504 87 PRLSPGIDELVKKLKANNKNVYLISGGFRHMINPIASVLGIPPENIFANQLLFKSSGEFLGFDANEPTSRSGGKAAAVQQ 166 (192)
Q Consensus 87 ~~~~~~~~e~l~~l~~~g~~~~IvS~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~K~~~l~~ 166 (192)
..++||+.++|++|+ ++++++|+|++...+++.+++++++.. .+|...+ .. ..... .|+. +..
T Consensus 44 v~l~pG~~e~L~~L~-~~~~l~I~Ts~~~~~~~~il~~l~~~~-~~f~~i~-~~-------~d~~~------~KP~-~~k 106 (148)
T smart00577 44 VKKRPGVDEFLKRAS-ELFELVVFTAGLRMYADPVLDLLDPKK-YFGYRRL-FR-------DECVF------VKGK-YVK 106 (148)
T ss_pred EEECCCHHHHHHHHH-hccEEEEEeCCcHHHHHHHHHHhCcCC-CEeeeEE-EC-------ccccc------cCCe-Eee
Confidence 357899999999998 579999999999999999999998852 2333222 11 11111 1222 334
Q ss_pred HHHHcCC--ceEEEEeCCccchhhhc
Q 029504 167 IRKAHAY--KVLAMIGDGATDLEVSI 190 (192)
Q Consensus 167 ~~~~~g~--~~~~~iGDs~~Di~~a~ 190 (192)
.++.+|. ++|++|||+.+|+.+++
T Consensus 107 ~l~~l~~~p~~~i~i~Ds~~~~~aa~ 132 (148)
T smart00577 107 DLSLLGRDLSNVIIIDDSPDSWPFHP 132 (148)
T ss_pred cHHHcCCChhcEEEEECCHHHhhcCc
Confidence 4555665 89999999999999885
No 116
>TIGR01459 HAD-SF-IIA-hyp4 HAD-superfamily class IIA hydrolase, TIGR01459. This hypothetical equivalog is a member of the Class IIA subfamily of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. The sequences modelled by this equivalog are all gram negative and primarily alpha proteobacteria. Only one sequence hase been annotated as other than "hypothetical." That one, from Brucella, is annotated as related to NagD, but only by sequence similarity and should be treated with some skepticism. (See comments for Class IIA subfamily)
Probab=98.92 E-value=5.2e-09 Score=80.47 Aligned_cols=83 Identities=22% Similarity=0.301 Sum_probs=59.0
Q ss_pred CCChhHHHHHHHHHHCCCcEEEEcCCcHHhHH--HHHHHcCCCCCc-EEecceeEecCCeeeeccCCCCCcCCCCHHHHH
Q 029504 88 RLSPGIDELVKKLKANNKNVYLISGGFRHMIN--PIASVLGIPPEN-IFANQLLFKSSGEFLGFDANEPTSRSGGKAAAV 164 (192)
Q Consensus 88 ~~~~~~~e~l~~l~~~g~~~~IvS~~~~~~~~--~~l~~~g~~~~~-~~~~~~~~~~~g~~~~~~~~~~~~~~~~K~~~l 164 (192)
.++||+.++|++|+++|++++|+||+.+.... ..++.+|++ . .+...+. ++. .-...+
T Consensus 24 ~~~pga~e~L~~L~~~G~~~~ivTN~~~~~~~~~~~L~~~gl~--~~~~~~Ii~---s~~--------------~~~~~l 84 (242)
T TIGR01459 24 HTYPGAVQNLNKIIAQGKPVYFVSNSPRNIFSLHKTLKSLGIN--ADLPEMIIS---SGE--------------IAVQMI 84 (242)
T ss_pred ccCccHHHHHHHHHHCCCEEEEEeCCCCChHHHHHHHHHCCCC--ccccceEEc---cHH--------------HHHHHH
Confidence 47899999999999999999999999877655 778999997 3 3442221 110 112345
Q ss_pred HHHHHHcCC--ceEEEEeCCccchhhh
Q 029504 165 QQIRKAHAY--KVLAMIGDGATDLEVS 189 (192)
Q Consensus 165 ~~~~~~~g~--~~~~~iGDs~~Di~~a 189 (192)
...+++++. ++++++||+..|+...
T Consensus 85 ~~~~~~~~~~~~~~~~vGd~~~d~~~~ 111 (242)
T TIGR01459 85 LESKKRFDIRNGIIYLLGHLENDIINL 111 (242)
T ss_pred HhhhhhccCCCceEEEeCCcccchhhh
Confidence 555555554 6799999998887644
No 117
>TIGR01497 kdpB K+-transporting ATPase, B subunit. One sequence is apparently mis-annotated in the primary literature, but properly annotated by TIGR.
Probab=98.91 E-value=4.2e-09 Score=91.09 Aligned_cols=81 Identities=26% Similarity=0.359 Sum_probs=70.8
Q ss_pred CCChhHHHHHHHHHHCCCcEEEEcCCcHHhHHHHHHHcCCCCCcEEecceeEecCCeeeeccCCCCCcCCCCHHHHHHHH
Q 029504 88 RLSPGIDELVKKLKANNKNVYLISGGFRHMINPIASVLGIPPENIFANQLLFKSSGEFLGFDANEPTSRSGGKAAAVQQI 167 (192)
Q Consensus 88 ~~~~~~~e~l~~l~~~g~~~~IvS~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~K~~~l~~~ 167 (192)
.++|++++.++.|++.|+++.++|++....++.+.+.+|++ ++++.. .|.+|...++.+
T Consensus 446 ~~Rp~a~eaI~~l~~~Gi~v~miTGD~~~ta~~iA~~lGI~--~v~a~~-------------------~PedK~~~v~~l 504 (675)
T TIGR01497 446 IVKGGIKERFAQLRKMGIKTIMITGDNRLTAAAIAAEAGVD--DFIAEA-------------------TPEDKIALIRQE 504 (675)
T ss_pred cchhHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHcCCC--EEEcCC-------------------CHHHHHHHHHHH
Confidence 68999999999999999999999999999999999999997 655521 135799999999
Q ss_pred HHHcCCceEEEEeCCccchhhhcc
Q 029504 168 RKAHAYKVLAMIGDGATDLEVSIF 191 (192)
Q Consensus 168 ~~~~g~~~~~~iGDs~~Di~~a~~ 191 (192)
+++ | ..+.|+||+.||.++++.
T Consensus 505 q~~-g-~~VamvGDG~NDapAL~~ 526 (675)
T TIGR01497 505 QAE-G-KLVAMTGDGTNDAPALAQ 526 (675)
T ss_pred HHc-C-CeEEEECCCcchHHHHHh
Confidence 775 3 379999999999999875
No 118
>TIGR01486 HAD-SF-IIB-MPGP mannosyl-3-phosphoglycerate phosphatase family. This small group of proteins is a member of the IIB subfamily (TIGR01484) of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. Several members of this family from thermophiles (and from Dehalococcoides ethenogenes) are now known to act as mannosyl-3-phosphoglycerate (MPG) phosphatase. In these cases, the enzyme acts after MPG synthase to make the compatible solute mannosylglycerate. We propose that other mesophilic members of this family do not act as mannosyl-3-phosphoglycerate phosphatase. A member of this family is found in Escherichia coli, which appears to lack MPG synthase. Mannosylglycerate is imported in E. coli by phosphoenolpyruvate-dependent transporter (PubMed:14645248), but it appears the phosphorylation is not on the glycerate moiety, that the phosphorylated import is degraded by an alpha-mannosidase from an adjacent gene, and that E. coli would have no pathway to obta
Probab=98.90 E-value=2.3e-08 Score=77.43 Aligned_cols=40 Identities=15% Similarity=0.191 Sum_probs=34.1
Q ss_pred CCcCCCCHHHHHHHHHHHcCC----ceEEEEeCCccchhhhccC
Q 029504 153 PTSRSGGKAAAVQQIRKAHAY----KVLAMIGDGATDLEVSIFI 192 (192)
Q Consensus 153 ~~~~~~~K~~~l~~~~~~~g~----~~~~~iGDs~~Di~~a~~~ 192 (192)
..+.+.+|+.+++.+++.+|+ +++++||||.||++|+++.
T Consensus 170 i~~~~~~Kg~ai~~l~~~~~i~~~~~~~~a~GD~~ND~~Ml~~a 213 (256)
T TIGR01486 170 VLGAGSDKGKAANALKQFYNQPGGAIKVVGLGDSPNDLPLLEVV 213 (256)
T ss_pred EecCCCCHHHHHHHHHHHHhhcCCCceEEEEcCCHhhHHHHHHC
Confidence 345567999999999999874 5799999999999999863
No 119
>TIGR02471 sucr_syn_bact_C sucrose phosphate synthase, sucrose phosphatase-like domain, bacterial. Sucrose phosphate synthase (SPS) and sucrose phosphate phosphatase (SPP) are the last two enzymes of sucrose biosynthesis. In cyanobacteria and plants, the C-terminal region of most or all versions of SPS has a domain homologous to the known SPP. This domain may serve a binding or regulatory rather than catalytic function. Sequences in this family are bacterial C-terminal regions found in all but two of the putative bacterial sucrose phosphate synthases described by TIGR02472.
Probab=98.89 E-value=2.5e-08 Score=76.37 Aligned_cols=39 Identities=15% Similarity=0.123 Sum_probs=34.4
Q ss_pred CCcCCCCHHHHHHHHHHHcCC--ceEEEEeCCccchhhhcc
Q 029504 153 PTSRSGGKAAAVQQIRKAHAY--KVLAMIGDGATDLEVSIF 191 (192)
Q Consensus 153 ~~~~~~~K~~~l~~~~~~~g~--~~~~~iGDs~~Di~~a~~ 191 (192)
..+...+|+.+++.+++++|+ +++++||||.||++|++.
T Consensus 153 i~~~~~~K~~al~~l~~~~g~~~~~~i~~GD~~nD~~ml~~ 193 (236)
T TIGR02471 153 VLPLRASKGLALRYLSYRWGLPLEQILVAGDSGNDEEMLRG 193 (236)
T ss_pred EeeCCCChHHHHHHHHHHhCCCHHHEEEEcCCccHHHHHcC
Confidence 355557999999999999997 789999999999999875
No 120
>PRK01122 potassium-transporting ATPase subunit B; Provisional
Probab=98.87 E-value=7e-09 Score=89.86 Aligned_cols=81 Identities=25% Similarity=0.367 Sum_probs=70.8
Q ss_pred CCChhHHHHHHHHHHCCCcEEEEcCCcHHhHHHHHHHcCCCCCcEEecceeEecCCeeeeccCCCCCcCCCCHHHHHHHH
Q 029504 88 RLSPGIDELVKKLKANNKNVYLISGGFRHMINPIASVLGIPPENIFANQLLFKSSGEFLGFDANEPTSRSGGKAAAVQQI 167 (192)
Q Consensus 88 ~~~~~~~e~l~~l~~~g~~~~IvS~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~K~~~l~~~ 167 (192)
.++|++++.++.|++.|+++.++||+....++.+.+.+|++ ++++... |.+|...++++
T Consensus 445 ~~R~~~~eai~~Lr~~GI~vvMiTGDn~~TA~aIA~elGId--~v~A~~~-------------------PedK~~iV~~l 503 (679)
T PRK01122 445 IVKPGIKERFAELRKMGIKTVMITGDNPLTAAAIAAEAGVD--DFLAEAT-------------------PEDKLALIRQE 503 (679)
T ss_pred cCchhHHHHHHHHHHCCCeEEEECCCCHHHHHHHHHHcCCc--EEEccCC-------------------HHHHHHHHHHH
Confidence 57999999999999999999999999999999999999997 6655321 35799999999
Q ss_pred HHHcCCceEEEEeCCccchhhhcc
Q 029504 168 RKAHAYKVLAMIGDGATDLEVSIF 191 (192)
Q Consensus 168 ~~~~g~~~~~~iGDs~~Di~~a~~ 191 (192)
+++ | +.+.|+|||.||.++++.
T Consensus 504 Q~~-G-~~VaMtGDGvNDAPALa~ 525 (679)
T PRK01122 504 QAE-G-RLVAMTGDGTNDAPALAQ 525 (679)
T ss_pred HHc-C-CeEEEECCCcchHHHHHh
Confidence 876 4 379999999999999875
No 121
>PTZ00174 phosphomannomutase; Provisional
Probab=98.87 E-value=2.4e-08 Score=77.04 Aligned_cols=37 Identities=19% Similarity=0.344 Sum_probs=32.0
Q ss_pred CCcCCCCHHHHHHHHHHHcCCceEEEEeC----Cccchhhhcc
Q 029504 153 PTSRSGGKAAAVQQIRKAHAYKVLAMIGD----GATDLEVSIF 191 (192)
Q Consensus 153 ~~~~~~~K~~~l~~~~~~~g~~~~~~iGD----s~~Di~~a~~ 191 (192)
.++.+.+|+.+++.+++. .+++++||| +.||++|.++
T Consensus 182 I~~~gvsKg~al~~L~~~--~~eviafGD~~~~~~NDieMl~~ 222 (247)
T PTZ00174 182 VFPKGWDKTYCLRHLEND--FKEIHFFGDKTFEGGNDYEIYND 222 (247)
T ss_pred eeeCCCcHHHHHHHHHhh--hhhEEEEcccCCCCCCcHhhhhc
Confidence 345567999999999988 479999999 8999999985
No 122
>PRK14010 potassium-transporting ATPase subunit B; Provisional
Probab=98.86 E-value=7.1e-09 Score=89.74 Aligned_cols=81 Identities=19% Similarity=0.268 Sum_probs=71.0
Q ss_pred CCChhHHHHHHHHHHCCCcEEEEcCCcHHhHHHHHHHcCCCCCcEEecceeEecCCeeeeccCCCCCcCCCCHHHHHHHH
Q 029504 88 RLSPGIDELVKKLKANNKNVYLISGGFRHMINPIASVLGIPPENIFANQLLFKSSGEFLGFDANEPTSRSGGKAAAVQQI 167 (192)
Q Consensus 88 ~~~~~~~e~l~~l~~~g~~~~IvS~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~K~~~l~~~ 167 (192)
.++|++++.+++|++.|+++.++||+....+..+.+.+|++ ++++... |.+|...++.+
T Consensus 441 p~R~~a~e~I~~Lr~~GI~vvMiTGDn~~TA~aIA~elGI~--~v~A~~~-------------------PedK~~iV~~l 499 (673)
T PRK14010 441 VIKDGLVERFRELREMGIETVMCTGDNELTAATIAKEAGVD--RFVAECK-------------------PEDKINVIREE 499 (673)
T ss_pred CCcHHHHHHHHHHHHCCCeEEEECCCCHHHHHHHHHHcCCc--eEEcCCC-------------------HHHHHHHHHHH
Confidence 68999999999999999999999999999999999999998 6655321 35799999998
Q ss_pred HHHcCCceEEEEeCCccchhhhcc
Q 029504 168 RKAHAYKVLAMIGDGATDLEVSIF 191 (192)
Q Consensus 168 ~~~~g~~~~~~iGDs~~Di~~a~~ 191 (192)
+++ | +.+.|+|||.||.++++.
T Consensus 500 Q~~-G-~~VaMtGDGvNDAPALa~ 521 (673)
T PRK14010 500 QAK-G-HIVAMTGDGTNDAPALAE 521 (673)
T ss_pred HhC-C-CEEEEECCChhhHHHHHh
Confidence 875 4 379999999999999875
No 123
>KOG3085 consensus Predicted hydrolase (HAD superfamily) [General function prediction only]
Probab=98.84 E-value=3e-08 Score=75.10 Aligned_cols=91 Identities=18% Similarity=0.108 Sum_probs=69.3
Q ss_pred CCCCChhHHHHHHHHHHCCCcEEEEcCCcHHhHHHHHHHcCCCCCcEEecceeEecCCeeeeccCCCCCcCCCCHHHHHH
Q 029504 86 PPRLSPGIDELVKKLKANNKNVYLISGGFRHMINPIASVLGIPPENIFANQLLFKSSGEFLGFDANEPTSRSGGKAAAVQ 165 (192)
Q Consensus 86 ~~~~~~~~~e~l~~l~~~g~~~~IvS~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~K~~~l~ 165 (192)
...+.+++.++++.+|+.|..+.++|+.....- .++..+|+. .+|+-.+... ..+-.+|++ ...+
T Consensus 111 ~~~~~~~~~~~lq~lR~~g~~l~iisN~d~r~~-~~l~~~~l~--~~fD~vv~S~--------e~g~~KPDp----~If~ 175 (237)
T KOG3085|consen 111 AWKYLDGMQELLQKLRKKGTILGIISNFDDRLR-LLLLPLGLS--AYFDFVVESC--------EVGLEKPDP----RIFQ 175 (237)
T ss_pred CceeccHHHHHHHHHHhCCeEEEEecCCcHHHH-HHhhccCHH--Hhhhhhhhhh--------hhccCCCCh----HHHH
Confidence 346778888999999999999999998877655 777888887 6777655332 222333443 6777
Q ss_pred HHHHHcCC--ceEEEEeCCc-cchhhhcc
Q 029504 166 QIRKAHAY--KVLAMIGDGA-TDLEVSIF 191 (192)
Q Consensus 166 ~~~~~~g~--~~~~~iGDs~-~Di~~a~~ 191 (192)
..++.+|+ ++|++|||+. ||++.|+-
T Consensus 176 ~al~~l~v~Pee~vhIgD~l~nD~~gA~~ 204 (237)
T KOG3085|consen 176 LALERLGVKPEECVHIGDLLENDYEGARN 204 (237)
T ss_pred HHHHHhCCChHHeEEecCccccccHhHHH
Confidence 78888887 9999999995 89999874
No 124
>PRK10671 copA copper exporting ATPase; Provisional
Probab=98.82 E-value=1.3e-08 Score=91.05 Aligned_cols=82 Identities=24% Similarity=0.390 Sum_probs=70.0
Q ss_pred CCCChhHHHHHHHHHHCCCcEEEEcCCcHHhHHHHHHHcCCCCCcEEecceeEecCCeeeeccCCCCCcCCCCHHHHHHH
Q 029504 87 PRLSPGIDELVKKLKANNKNVYLISGGFRHMINPIASVLGIPPENIFANQLLFKSSGEFLGFDANEPTSRSGGKAAAVQQ 166 (192)
Q Consensus 87 ~~~~~~~~e~l~~l~~~g~~~~IvS~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~K~~~l~~ 166 (192)
..++|++.+.++.|++.|++++++|++....++.+++.+|++ ++++... |.+|.+.+++
T Consensus 649 d~~r~~a~~~i~~L~~~gi~v~~~Tgd~~~~a~~ia~~lgi~--~~~~~~~-------------------p~~K~~~i~~ 707 (834)
T PRK10671 649 DPLRSDSVAALQRLHKAGYRLVMLTGDNPTTANAIAKEAGID--EVIAGVL-------------------PDGKAEAIKR 707 (834)
T ss_pred CcchhhHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHcCCC--EEEeCCC-------------------HHHHHHHHHH
Confidence 368999999999999999999999999999999999999997 6665321 2369999998
Q ss_pred HHHHcCCceEEEEeCCccchhhhcc
Q 029504 167 IRKAHAYKVLAMIGDGATDLEVSIF 191 (192)
Q Consensus 167 ~~~~~g~~~~~~iGDs~~Di~~a~~ 191 (192)
+..+ + ++++|||||.||++|++.
T Consensus 708 l~~~-~-~~v~~vGDg~nD~~al~~ 730 (834)
T PRK10671 708 LQSQ-G-RQVAMVGDGINDAPALAQ 730 (834)
T ss_pred Hhhc-C-CEEEEEeCCHHHHHHHHh
Confidence 8754 3 489999999999999875
No 125
>PRK14502 bifunctional mannosyl-3-phosphoglycerate synthase/mannosyl-3 phosphoglycerate phosphatase; Provisional
Probab=98.82 E-value=3.4e-08 Score=84.74 Aligned_cols=36 Identities=14% Similarity=0.239 Sum_probs=32.1
Q ss_pred CCCHHHHHHHHHHHcCC--ceEEEE--eCCccchhhhccC
Q 029504 157 SGGKAAAVQQIRKAHAY--KVLAMI--GDGATDLEVSIFI 192 (192)
Q Consensus 157 ~~~K~~~l~~~~~~~g~--~~~~~i--GDs~~Di~~a~~~ 192 (192)
+.+|+.+++.+++.+|+ +++++| |||.||++|++++
T Consensus 611 gvdKG~AL~~L~e~~gI~~~eViafalGDs~NDisMLe~A 650 (694)
T PRK14502 611 GNDKGKAIKILNELFRLNFGNIHTFGLGDSENDYSMLETV 650 (694)
T ss_pred CCCHHHHHHHHHHHhCCCccceEEEEcCCcHhhHHHHHhC
Confidence 57999999999999987 678888 9999999999863
No 126
>COG0241 HisB Histidinol phosphatase and related phosphatases [Amino acid transport and metabolism]
Probab=98.75 E-value=6.7e-08 Score=70.36 Aligned_cols=92 Identities=15% Similarity=0.160 Sum_probs=64.3
Q ss_pred CCChhHHHHHHHHHHCCCcEEEEcCCc---------------HHhHHHHHHHcCCCCCcEEecceeEecCCeeeeccCCC
Q 029504 88 RLSPGIDELVKKLKANNKNVYLISGGF---------------RHMINPIASVLGIPPENIFANQLLFKSSGEFLGFDANE 152 (192)
Q Consensus 88 ~~~~~~~e~l~~l~~~g~~~~IvS~~~---------------~~~~~~~l~~~g~~~~~~~~~~~~~~~~g~~~~~~~~~ 152 (192)
.+.||+.+.+..+++.|+.++|+||-. ...+...++..|...+.++-..-. ....+..
T Consensus 31 ~~~~g~i~al~~l~~~gy~lVvvTNQsGi~rgyf~~~~f~~~~~~m~~~l~~~gv~id~i~~Cph~-------p~~~c~c 103 (181)
T COG0241 31 QFIPGVIPALLKLQRAGYKLVVVTNQSGIGRGYFTEADFDKLHNKMLKILASQGVKIDGILYCPHH-------PEDNCDC 103 (181)
T ss_pred ccCccHHHHHHHHHhCCCeEEEEECCCCccccCccHHHHHHHHHHHHHHHHHcCCccceEEECCCC-------CCCCCcc
Confidence 588999999999999999999999832 223556666667553333322100 0000112
Q ss_pred CCcCCCCHHHHHHHHHHHcCC--ceEEEEeCCccchhhhc
Q 029504 153 PTSRSGGKAAAVQQIRKAHAY--KVLAMIGDGATDLEVSI 190 (192)
Q Consensus 153 ~~~~~~~K~~~l~~~~~~~g~--~~~~~iGDs~~Di~~a~ 190 (192)
.+ .|...+.++++++++ +..++|||...|+++|.
T Consensus 104 RK----P~~gm~~~~~~~~~iD~~~s~~VGD~~~Dlq~a~ 139 (181)
T COG0241 104 RK----PKPGMLLSALKEYNIDLSRSYVVGDRLTDLQAAE 139 (181)
T ss_pred cC----CChHHHHHHHHHhCCCccceEEecCcHHHHHHHH
Confidence 21 367889999999887 89999999999999885
No 127
>COG4087 Soluble P-type ATPase [General function prediction only]
Probab=98.72 E-value=3.5e-08 Score=67.09 Aligned_cols=83 Identities=25% Similarity=0.448 Sum_probs=69.2
Q ss_pred CCCChhHHHHHHHHHHCCCcEEEEcCCcHHhHHHHHHHcCCCCCcEEecceeEecCCeeeeccCCCCCcCCCCHHHHHHH
Q 029504 87 PRLSPGIDELVKKLKANNKNVYLISGGFRHMINPIASVLGIPPENIFANQLLFKSSGEFLGFDANEPTSRSGGKAAAVQQ 166 (192)
Q Consensus 87 ~~~~~~~~e~l~~l~~~g~~~~IvS~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~K~~~l~~ 166 (192)
..+++.+.+.++.|+.. ++++|+|++...++...++..|++-+.+|+.. ++..|.+.+.+
T Consensus 29 Gklf~ev~e~iqeL~d~-V~i~IASgDr~gsl~~lae~~gi~~~rv~a~a-------------------~~e~K~~ii~e 88 (152)
T COG4087 29 GKLFSEVSETIQELHDM-VDIYIASGDRKGSLVQLAEFVGIPVERVFAGA-------------------DPEMKAKIIRE 88 (152)
T ss_pred cEEcHhhHHHHHHHHHh-heEEEecCCcchHHHHHHHHcCCceeeeeccc-------------------CHHHHHHHHHH
Confidence 46889999999999999 99999999999999999999999854444321 12468899998
Q ss_pred HHHHcCCceEEEEeCCccchhhhcc
Q 029504 167 IRKAHAYKVLAMIGDGATDLEVSIF 191 (192)
Q Consensus 167 ~~~~~g~~~~~~iGDs~~Di~~a~~ 191 (192)
+.+.+ +.|+|+||+.||+.|++.
T Consensus 89 Lkk~~--~k~vmVGnGaND~laLr~ 111 (152)
T COG4087 89 LKKRY--EKVVMVGNGANDILALRE 111 (152)
T ss_pred hcCCC--cEEEEecCCcchHHHhhh
Confidence 88754 599999999999999874
No 128
>PLN02645 phosphoglycolate phosphatase
Probab=98.71 E-value=9.8e-08 Score=76.07 Aligned_cols=76 Identities=14% Similarity=0.160 Sum_probs=61.1
Q ss_pred CcccccccchHHHHHHhhcCCcEEecCCCcccchhHhhHHHHHHHHHHHHHHHhCCCccHHHHHHHHHhhcCCCHHHHHH
Q 029504 1 MRALMNLRNFVELERLLRNGLPGCLASLFIENNSCLIFLDGLTEFIFVFFARAMGGSVPFEEALAARLSLFKPSLSQVQD 80 (192)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~k~iifD~~~~DGTL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (192)
|-+-|.+.+.....+.+.++|+++|| +||||++.
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~D---~DGtl~~~------------------------------------------- 42 (311)
T PLN02645 9 MAAAAQLLTLENADELIDSVETFIFD---CDGVIWKG------------------------------------------- 42 (311)
T ss_pred cccccccCCHHHHHHHHHhCCEEEEe---CcCCeEeC-------------------------------------------
Confidence 44556777888888888899999999 99999763
Q ss_pred HHHhCCCCCChhHHHHHHHHHHCCCcEEEEcCCcHHhHHHHH---HHcCCC
Q 029504 81 FLEKRPPRLSPGIDELVKKLKANNKNVYLISGGFRHMINPIA---SVLGIP 128 (192)
Q Consensus 81 ~~~~~~~~~~~~~~e~l~~l~~~g~~~~IvS~~~~~~~~~~l---~~~g~~ 128 (192)
..+.||+.++|+.|+++|++++++||+.....+.++ +.+|++
T Consensus 43 ------~~~~~ga~e~l~~lr~~g~~~~~~TN~~~~~~~~~~~~l~~lGi~ 87 (311)
T PLN02645 43 ------DKLIEGVPETLDMLRSMGKKLVFVTNNSTKSRAQYGKKFESLGLN 87 (311)
T ss_pred ------CccCcCHHHHHHHHHHCCCEEEEEeCCCCCCHHHHHHHHHHCCCC
Confidence 136699999999999999999999998855444444 667775
No 129
>PLN02382 probable sucrose-phosphatase
Probab=98.71 E-value=1.6e-07 Score=77.55 Aligned_cols=40 Identities=20% Similarity=0.218 Sum_probs=35.0
Q ss_pred CCCcCCCCHHHHHHHHHHHc---CC--ceEEEEeCCccchhhhcc
Q 029504 152 EPTSRSGGKAAAVQQIRKAH---AY--KVLAMIGDGATDLEVSIF 191 (192)
Q Consensus 152 ~~~~~~~~K~~~l~~~~~~~---g~--~~~~~iGDs~~Di~~a~~ 191 (192)
+..+.+.+|+.+++.+++.+ |+ +++++||||.||++|.+.
T Consensus 168 dI~p~g~sKg~Al~~L~~~~~~~gi~~~~~iafGDs~NDleMl~~ 212 (413)
T PLN02382 168 DVLPQGAGKGQALAYLLKKLKAEGKAPVNTLVCGDSGNDAELFSV 212 (413)
T ss_pred EEEeCCCCHHHHHHHHHHHhhhcCCChhcEEEEeCCHHHHHHHhc
Confidence 34566679999999999998 76 899999999999999875
No 130
>TIGR01647 ATPase-IIIA_H plasma-membrane proton-efflux P-type ATPase. This model describes the plasma membrane proton efflux P-type ATPase found in plants, fungi, protozoa, slime molds and archaea. The best studied representative is from yeast.
Probab=98.70 E-value=6.1e-08 Score=85.67 Aligned_cols=102 Identities=18% Similarity=0.214 Sum_probs=70.9
Q ss_pred CCChhHHHHHHHHHHCCCcEEEEcCCcHHhHHHHHHHcCCCCCcEEec-ceeEecC-Ceeeec--------cCCCCCcCC
Q 029504 88 RLSPGIDELVKKLKANNKNVYLISGGFRHMINPIASVLGIPPENIFAN-QLLFKSS-GEFLGF--------DANEPTSRS 157 (192)
Q Consensus 88 ~~~~~~~e~l~~l~~~g~~~~IvS~~~~~~~~~~l~~~g~~~~~~~~~-~~~~~~~-g~~~~~--------~~~~~~~~~ 157 (192)
.++|++++.++.|++.|+++.++||+....+..+.+.+|+.. .++.. .+.-... ..+... ........|
T Consensus 442 p~R~~a~~aI~~l~~aGI~v~miTGD~~~tA~~IA~~lGI~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~vfAr~~P 520 (755)
T TIGR01647 442 PPRHDTKETIERARHLGVEVKMVTGDHLAIAKETARRLGLGT-NIYTADVLLKGDNRDDLPSGELGEMVEDADGFAEVFP 520 (755)
T ss_pred CChhhHHHHHHHHHHCCCeEEEECCCCHHHHHHHHHHcCCCC-CCcCHHHhcCCcchhhCCHHHHHHHHHhCCEEEecCH
Confidence 689999999999999999999999999999999999999973 12111 1100000 000000 000001224
Q ss_pred CCHHHHHHHHHHHcCCceEEEEeCCccchhhhccC
Q 029504 158 GGKAAAVQQIRKAHAYKVLAMIGDGATDLEVSIFI 192 (192)
Q Consensus 158 ~~K~~~l~~~~~~~g~~~~~~iGDs~~Di~~a~~~ 192 (192)
.+|...++.++++ | ..+.|+|||.||.++++.+
T Consensus 521 e~K~~iV~~lq~~-G-~~VamvGDGvNDapAL~~A 553 (755)
T TIGR01647 521 EHKYEIVEILQKR-G-HLVGMTGDGVNDAPALKKA 553 (755)
T ss_pred HHHHHHHHHHHhc-C-CEEEEEcCCcccHHHHHhC
Confidence 5799999998765 5 4899999999999998753
No 131
>PRK11033 zntA zinc/cadmium/mercury/lead-transporting ATPase; Provisional
Probab=98.70 E-value=4.4e-08 Score=86.35 Aligned_cols=79 Identities=27% Similarity=0.314 Sum_probs=67.4
Q ss_pred CCChhHHHHHHHHHHCCCcEEEEcCCcHHhHHHHHHHcCCCCCcEEecceeEecCCeeeeccCCCCCcCCCCHHHHHHHH
Q 029504 88 RLSPGIDELVKKLKANNKNVYLISGGFRHMINPIASVLGIPPENIFANQLLFKSSGEFLGFDANEPTSRSGGKAAAVQQI 167 (192)
Q Consensus 88 ~~~~~~~e~l~~l~~~g~~~~IvS~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~K~~~l~~~ 167 (192)
.++|++.+.++.|++.|++++++|++....++.+++.+|++ ++... .|.+|...++++
T Consensus 568 ~~r~~a~~~i~~L~~~gi~~~llTGd~~~~a~~ia~~lgi~---~~~~~-------------------~p~~K~~~v~~l 625 (741)
T PRK11033 568 TLRADARQAISELKALGIKGVMLTGDNPRAAAAIAGELGID---FRAGL-------------------LPEDKVKAVTEL 625 (741)
T ss_pred CCchhHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHcCCC---eecCC-------------------CHHHHHHHHHHH
Confidence 68999999999999999999999999999999999999996 22210 134799999998
Q ss_pred HHHcCCceEEEEeCCccchhhhcc
Q 029504 168 RKAHAYKVLAMIGDGATDLEVSIF 191 (192)
Q Consensus 168 ~~~~g~~~~~~iGDs~~Di~~a~~ 191 (192)
.+. ..|+|+|||.||.++++.
T Consensus 626 ~~~---~~v~mvGDgiNDapAl~~ 646 (741)
T PRK11033 626 NQH---APLAMVGDGINDAPAMKA 646 (741)
T ss_pred hcC---CCEEEEECCHHhHHHHHh
Confidence 754 389999999999999874
No 132
>TIGR01684 viral_ppase viral phosphatase. These proteins also include an N-terminal domain (ca. 125 aas) that is unique to this clade.
Probab=98.69 E-value=4.6e-08 Score=76.09 Aligned_cols=44 Identities=20% Similarity=0.215 Sum_probs=40.6
Q ss_pred CC-hhHHHHHHHHHHCCCcEEEEcCCcHHhHHHHHHHcCCCCCcEEe
Q 029504 89 LS-PGIDELVKKLKANNKNVYLISGGFRHMINPIASVLGIPPENIFA 134 (192)
Q Consensus 89 ~~-~~~~e~l~~l~~~g~~~~IvS~~~~~~~~~~l~~~g~~~~~~~~ 134 (192)
++ ||+.++|++|+++|++++|+|++.+..+...++.+|+. .+|.
T Consensus 146 irdPgV~EaL~~LkekGikLaIaTS~~Re~v~~~L~~lGLd--~YFd 190 (301)
T TIGR01684 146 IRDPRIYDSLTELKKRGCILVLWSYGDRDHVVESMRKVKLD--RYFD 190 (301)
T ss_pred cCCHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHcCCC--cccC
Confidence 55 99999999999999999999999999999999999998 6664
No 133
>COG2179 Predicted hydrolase of the HAD superfamily [General function prediction only]
Probab=98.68 E-value=1.2e-07 Score=67.39 Aligned_cols=80 Identities=21% Similarity=0.297 Sum_probs=65.0
Q ss_pred CCChhHHHHHHHHHHCCCcEEEEcCCcHHhHHHHHHHcCCCCCcEEecceeEecCCeeeeccCCCCCcCCCCHHHHHHHH
Q 029504 88 RLSPGIDELVKKLKANNKNVYLISGGFRHMINPIASVLGIPPENIFANQLLFKSSGEFLGFDANEPTSRSGGKAAAVQQI 167 (192)
Q Consensus 88 ~~~~~~~e~l~~l~~~g~~~~IvS~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~K~~~l~~~ 167 (192)
...|.+++.+..++..|+++.|+||..+.-+...++.+|++ .++... + .-+.++...
T Consensus 46 ~~tpe~~~W~~e~k~~gi~v~vvSNn~e~RV~~~~~~l~v~--fi~~A~---------------K------P~~~~fr~A 102 (175)
T COG2179 46 DATPELRAWLAELKEAGIKVVVVSNNKESRVARAAEKLGVP--FIYRAK---------------K------PFGRAFRRA 102 (175)
T ss_pred CCCHHHHHHHHHHHhcCCEEEEEeCCCHHHHHhhhhhcCCc--eeeccc---------------C------ccHHHHHHH
Confidence 46688899999999999999999999999999999999997 333311 1 135778888
Q ss_pred HHHcCC--ceEEEEeCCc-cchhhhc
Q 029504 168 RKAHAY--KVLAMIGDGA-TDLEVSI 190 (192)
Q Consensus 168 ~~~~g~--~~~~~iGDs~-~Di~~a~ 190 (192)
+++.++ ++|++|||.. +|+-.+.
T Consensus 103 l~~m~l~~~~vvmVGDqL~TDVlggn 128 (175)
T COG2179 103 LKEMNLPPEEVVMVGDQLFTDVLGGN 128 (175)
T ss_pred HHHcCCChhHEEEEcchhhhhhhccc
Confidence 888887 9999999995 7887654
No 134
>TIGR01524 ATPase-IIIB_Mg magnesium-translocating P-type ATPase. The magnesium ATPases have been classified as type IIIB by a phylogenetic analysis.
Probab=98.67 E-value=1e-07 Score=85.44 Aligned_cols=97 Identities=18% Similarity=0.226 Sum_probs=71.8
Q ss_pred CCChhHHHHHHHHHHCCCcEEEEcCCcHHhHHHHHHHcCCCCCcEEec-ceeEecCC---------eeeeccCCCCCcCC
Q 029504 88 RLSPGIDELVKKLKANNKNVYLISGGFRHMINPIASVLGIPPENIFAN-QLLFKSSG---------EFLGFDANEPTSRS 157 (192)
Q Consensus 88 ~~~~~~~e~l~~l~~~g~~~~IvS~~~~~~~~~~l~~~g~~~~~~~~~-~~~~~~~g---------~~~~~~~~~~~~~~ 157 (192)
+++|++++.++.|++.|+++.++||+....+..+++.+|+...+++.. .+.--++. .+.. ...|
T Consensus 515 p~R~~~~~aI~~l~~aGI~vvmiTGD~~~tA~aIA~~lGI~~~~v~~g~~l~~~~~~el~~~~~~~~vfA------r~~P 588 (867)
T TIGR01524 515 PPKESTKEAIAALFKNGINVKVLTGDNEIVTARICQEVGIDANDFLLGADIEELSDEELARELRKYHIFA------RLTP 588 (867)
T ss_pred CCchhHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHcCCCCCCeeecHhhhhCCHHHHHHHhhhCeEEE------ECCH
Confidence 689999999999999999999999999999999999999974333221 10000000 1111 1224
Q ss_pred CCHHHHHHHHHHHcCCceEEEEeCCccchhhhccC
Q 029504 158 GGKAAAVQQIRKAHAYKVLAMIGDGATDLEVSIFI 192 (192)
Q Consensus 158 ~~K~~~l~~~~~~~g~~~~~~iGDs~~Di~~a~~~ 192 (192)
.+|...++.++++ | ..+.|+|||.||.++++.+
T Consensus 589 e~K~~iV~~lq~~-G-~vVam~GDGvNDapALk~A 621 (867)
T TIGR01524 589 MQKSRIIGLLKKA-G-HTVGFLGDGINDAPALRKA 621 (867)
T ss_pred HHHHHHHHHHHhC-C-CEEEEECCCcccHHHHHhC
Confidence 6899999998765 5 3799999999999998753
No 135
>COG4030 Uncharacterized protein conserved in archaea [Function unknown]
Probab=98.66 E-value=4e-07 Score=67.84 Aligned_cols=114 Identities=22% Similarity=0.358 Sum_probs=78.2
Q ss_pred HHHHHHHHhCCCCCChhHHHHHHHHHHCCCcEEEEcCCcHHhHHHHHHHcCCCCCcEEecceeEec--------------
Q 029504 76 SQVQDFLEKRPPRLSPGIDELVKKLKANNKNVYLISGGFRHMINPIASVLGIPPENIFANQLLFKS-------------- 141 (192)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~~e~l~~l~~~g~~~~IvS~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~-------------- 141 (192)
...+++-+. ...+.||+.++++.++.. ++-+|+|.+..++++++....|++..+...+.+.+++
T Consensus 72 ~dlrr~sE~-sa~lvPgA~etm~~l~~~-~tp~v~STSY~qy~~r~a~~ig~Prg~~~~Te~~lD~~~~PeeeR~E~L~~ 149 (315)
T COG4030 72 RDLRRISEL-SAKLVPGAEETMATLQER-WTPVVISTSYTQYLRRTASMIGVPRGELHGTEVDLDSIAVPEEEREELLSI 149 (315)
T ss_pred HHHHHHHHh-hcccCCChHHHHHHHhcc-CCceEEeccHHHHHHHHHHhcCCCccccccccccCccccCChHHHHHHHHh
Confidence 334444433 367999999999888755 6778999999999999999999987777766665542
Q ss_pred -------CCe--e--------------eeccCCCC-CcCCCCHHHHHHHHHHHcCC-ceEEEEeCCccchhhhcc
Q 029504 142 -------SGE--F--------------LGFDANEP-TSRSGGKAAAVQQIRKAHAY-KVLAMIGDGATDLEVSIF 191 (192)
Q Consensus 142 -------~g~--~--------------~~~~~~~~-~~~~~~K~~~l~~~~~~~g~-~~~~~iGDs~~Di~~a~~ 191 (192)
+|+ + .++.+... ...+..|++.+..+++.-++ ..++++|||.+|+.|+++
T Consensus 150 ~~~~~~~~geelfe~lDe~F~rLip~E~gki~~~vk~VGgg~ka~i~e~~~ele~~d~sa~~VGDSItDv~ml~~ 224 (315)
T COG4030 150 IDVIASLSGEELFEKLDELFSRLIPSEVGKIVESVKAVGGGEKAKIMEGYCELEGIDFSAVVVGDSITDVKMLEA 224 (315)
T ss_pred cCccccccHHHHHHHHHHHHhhcCHHHHHHHHHhhhhccCcchhHHHHHHHhhcCCCcceeEecCcccchHHHHH
Confidence 010 0 00000000 11224677778888876666 447999999999999986
No 136
>KOG0207 consensus Cation transport ATPase [Inorganic ion transport and metabolism]
Probab=98.66 E-value=1.2e-07 Score=82.57 Aligned_cols=81 Identities=27% Similarity=0.431 Sum_probs=71.7
Q ss_pred CCCChhHHHHHHHHHHCCCcEEEEcCCcHHhHHHHHHHcCCCCCcEEecceeEecCCeeeeccCCCCCcCCCCHHHHHHH
Q 029504 87 PRLSPGIDELVKKLKANNKNVYLISGGFRHMINPIASVLGIPPENIFANQLLFKSSGEFLGFDANEPTSRSGGKAAAVQQ 166 (192)
Q Consensus 87 ~~~~~~~~e~l~~l~~~g~~~~IvS~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~K~~~l~~ 166 (192)
.+++|++...+..|++.|++++++||+....++.+.++.|++ .+++... |.+|.+.+++
T Consensus 722 D~vr~~a~~av~~Lk~~Gi~v~mLTGDn~~aA~svA~~VGi~--~V~aev~-------------------P~~K~~~Ik~ 780 (951)
T KOG0207|consen 722 DQVRPDAALAVAELKSMGIKVVMLTGDNDAAARSVAQQVGID--NVYAEVL-------------------PEQKAEKIKE 780 (951)
T ss_pred cccchhHHHHHHHHHhcCceEEEEcCCCHHHHHHHHHhhCcc--eEEeccC-------------------chhhHHHHHH
Confidence 478999999999999999999999999999999999999987 7777543 4579999999
Q ss_pred HHHHcCCceEEEEeCCccchhhhc
Q 029504 167 IRKAHAYKVLAMIGDGATDLEVSI 190 (192)
Q Consensus 167 ~~~~~g~~~~~~iGDs~~Di~~a~ 190 (192)
++++-+ .+.|+|||.||-+++-
T Consensus 781 lq~~~~--~VaMVGDGINDaPALA 802 (951)
T KOG0207|consen 781 IQKNGG--PVAMVGDGINDAPALA 802 (951)
T ss_pred HHhcCC--cEEEEeCCCCccHHHH
Confidence 998643 8999999999998764
No 137
>TIGR01522 ATPase-IIA2_Ca golgi membrane calcium-translocating P-type ATPase. The calcium P-type ATPases have been characterized as Type IIA based on a phylogenetic analysis which distinguishes this group from the Type IIB PMCA calcium pump modelled by TIGR01517. A separate analysis divides Type IIA into sub-types, SERCA and PMR1 the former of which is modelled by TIGR01116.
Probab=98.66 E-value=9.5e-08 Score=85.90 Aligned_cols=95 Identities=23% Similarity=0.366 Sum_probs=70.1
Q ss_pred CCChhHHHHHHHHHHCCCcEEEEcCCcHHhHHHHHHHcCCCCCcEEecce---eEec-----------CCeeeeccCCCC
Q 029504 88 RLSPGIDELVKKLKANNKNVYLISGGFRHMINPIASVLGIPPENIFANQL---LFKS-----------SGEFLGFDANEP 153 (192)
Q Consensus 88 ~~~~~~~e~l~~l~~~g~~~~IvS~~~~~~~~~~l~~~g~~~~~~~~~~~---~~~~-----------~g~~~~~~~~~~ 153 (192)
.++|++++.++.|++.|+++.++||+....+..+++.+|+.. .....+ .++. +-.+..
T Consensus 528 p~r~~~~~~i~~l~~~Gi~v~miTGD~~~tA~~ia~~~Gi~~--~~~~~v~g~~l~~~~~~~l~~~~~~~~Vfa------ 599 (884)
T TIGR01522 528 PPRPGVKEAVTTLITGGVRIIMITGDSQETAVSIARRLGMPS--KTSQSVSGEKLDAMDDQQLSQIVPKVAVFA------ 599 (884)
T ss_pred cchhHHHHHHHHHHHCCCeEEEECCCCHHHHHHHHHHcCCCC--CCCceeEhHHhHhCCHHHHHHHhhcCeEEE------
Confidence 679999999999999999999999999999999999999963 111110 0000 000111
Q ss_pred CcCCCCHHHHHHHHHHHcCCceEEEEeCCccchhhhccC
Q 029504 154 TSRSGGKAAAVQQIRKAHAYKVLAMIGDGATDLEVSIFI 192 (192)
Q Consensus 154 ~~~~~~K~~~l~~~~~~~g~~~~~~iGDs~~Di~~a~~~ 192 (192)
...|..|...++.+.+. | +.+.|+|||.||.++++.+
T Consensus 600 r~~P~~K~~iv~~lq~~-g-~~v~mvGDGvND~pAl~~A 636 (884)
T TIGR01522 600 RASPEHKMKIVKALQKR-G-DVVAMTGDGVNDAPALKLA 636 (884)
T ss_pred ECCHHHHHHHHHHHHHC-C-CEEEEECCCcccHHHHHhC
Confidence 12245798888887764 5 4899999999999999853
No 138
>TIGR02244 HAD-IG-Ncltidse HAD superfamily (subfamily IG) hydrolase, 5'-nucleotidase. A TIGRFAMs model (TIGR01993) represents a (putative) family of _pyrimidine_ 5'-nucleotidases which are also subfamily I HAD's, which should not be confused with the current model.
Probab=98.65 E-value=7.8e-07 Score=71.29 Aligned_cols=102 Identities=17% Similarity=0.185 Sum_probs=64.4
Q ss_pred CCCChhHHHHHHHHHHCCCcEEEEcCCcHHhHHHHHHHc-C-------CCCCcEEecceeEec-----------------
Q 029504 87 PRLSPGIDELVKKLKANNKNVYLISGGFRHMINPIASVL-G-------IPPENIFANQLLFKS----------------- 141 (192)
Q Consensus 87 ~~~~~~~~e~l~~l~~~g~~~~IvS~~~~~~~~~~l~~~-g-------~~~~~~~~~~~~~~~----------------- 141 (192)
....||+.++|+.++++|++++|+||+...+++.+++.+ | +. .+|+..+.-..
T Consensus 183 v~~~pgl~elL~~Lr~~G~klfLvTNS~~~yt~~im~~l~g~~~~~~~w~--~yFD~IIt~a~KP~FF~~~~pf~~v~~~ 260 (343)
T TIGR02244 183 VLRDPKLPLFLSKLKEHGKKLFLLTNSDYDYTDKGMKYLLGPFLGEHDWR--DYFDVVIVDARKPGFFTEGRPFRQVDVE 260 (343)
T ss_pred hccchhHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHhhCCcccccchH--hhCcEEEeCCCCCcccCCCCceEEEeCC
Confidence 356899999999999999999999999999999999986 6 55 55543321111
Q ss_pred CCeeeeccCCCCCcCCCCHHHHHHHHHHHcCC--ceEEEEeCCc-cchhhhc
Q 029504 142 SGEFLGFDANEPTSRSGGKAAAVQQIRKAHAY--KVLAMIGDGA-TDLEVSI 190 (192)
Q Consensus 142 ~g~~~~~~~~~~~~~~~~K~~~l~~~~~~~g~--~~~~~iGDs~-~Di~~a~ 190 (192)
.|.........-.+...-.+=.+.++.+.+|. ++++||||.. +|+-.++
T Consensus 261 ~g~~~~~~~~~l~~g~vY~gGn~~~~~~~l~~~~~~vlYvGD~i~~Di~~~k 312 (343)
T TIGR02244 261 TGSLKWGEVDGLEPGKVYSGGSLKQFHELLKWRGKEVLYFGDHIYGDLLRSK 312 (343)
T ss_pred CCcccCCccccccCCCeEeCCCHHHHHHHHCCCCCcEEEECCcchHHHHhhH
Confidence 11111100000000000001225555665665 8999999996 6887665
No 139
>PF05116 S6PP: Sucrose-6F-phosphate phosphohydrolase; InterPro: IPR006380 This family of sequences represent sucrose phosphate phosphohydrolase (SPP) from plants and cyanobacteria []. SPP is a member of the Class IIB subfamily of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. SPP catalyzes the final step in the biosynthesis of sucrose, a critically important molecule for plants. Sucrose phosphate synthase (SPS), the prior step in the biosynthesis of sucrose contains a domain which exhibits considerable similarity to SPP albeit without conservation of the catalytic residues. The catalytic machinery of the synthase resides in another domain. It seems likely that the phosphatase-like domain is involved in substrate binding, possibly binding both substrates in a "product-like" orientation prior to ligation by the synthase catalytic domain.; PDB: 1TJ5_A 2B1Q_A 1TJ4_A 1S2O_A 1U2T_A 2D2V_A 1TJ3_A 1U2S_A 2B1R_A 3GYG_B ....
Probab=98.65 E-value=2.8e-07 Score=71.10 Aligned_cols=37 Identities=22% Similarity=0.333 Sum_probs=31.8
Q ss_pred CcCCCCHHHHHHHHHHHcCC--ceEEEEeCCccchhhhc
Q 029504 154 TSRSGGKAAAVQQIRKAHAY--KVLAMIGDGATDLEVSI 190 (192)
Q Consensus 154 ~~~~~~K~~~l~~~~~~~g~--~~~~~iGDs~~Di~~a~ 190 (192)
.|...+|+.+++.+++++++ ++++++|||.||++|+.
T Consensus 160 lP~~a~K~~Al~~L~~~~~~~~~~vl~aGDSgND~~mL~ 198 (247)
T PF05116_consen 160 LPKGASKGAALRYLMERWGIPPEQVLVAGDSGNDLEMLE 198 (247)
T ss_dssp EETT-SHHHHHHHHHHHHT--GGGEEEEESSGGGHHHHC
T ss_pred ccCCCCHHHHHHHHHHHhCCCHHHEEEEeCCCCcHHHHc
Confidence 45567999999999999998 78999999999999985
No 140
>PRK15122 magnesium-transporting ATPase; Provisional
Probab=98.63 E-value=1.1e-07 Score=85.49 Aligned_cols=96 Identities=14% Similarity=0.212 Sum_probs=71.4
Q ss_pred CCChhHHHHHHHHHHCCCcEEEEcCCcHHhHHHHHHHcCCCCCcEEec-cee----------EecCCeeeeccCCCCCcC
Q 029504 88 RLSPGIDELVKKLKANNKNVYLISGGFRHMINPIASVLGIPPENIFAN-QLL----------FKSSGEFLGFDANEPTSR 156 (192)
Q Consensus 88 ~~~~~~~e~l~~l~~~g~~~~IvS~~~~~~~~~~l~~~g~~~~~~~~~-~~~----------~~~~g~~~~~~~~~~~~~ 156 (192)
+++|++++.++.|++.|+++.++||+....+..+.+.+|+....++.. .+. +.+...+. ...
T Consensus 550 p~R~~a~~aI~~l~~aGI~v~miTGD~~~tA~aIA~~lGI~~~~vi~G~el~~~~~~el~~~v~~~~VfA-------r~s 622 (903)
T PRK15122 550 PPKESAAPAIAALRENGVAVKVLTGDNPIVTAKICREVGLEPGEPLLGTEIEAMDDAALAREVEERTVFA-------KLT 622 (903)
T ss_pred ccHHHHHHHHHHHHHCCCeEEEECCCCHHHHHHHHHHcCCCCCCccchHhhhhCCHHHHHHHhhhCCEEE-------EeC
Confidence 689999999999999999999999999999999999999963222211 000 00001111 112
Q ss_pred CCCHHHHHHHHHHHcCCceEEEEeCCccchhhhccC
Q 029504 157 SGGKAAAVQQIRKAHAYKVLAMIGDGATDLEVSIFI 192 (192)
Q Consensus 157 ~~~K~~~l~~~~~~~g~~~~~~iGDs~~Di~~a~~~ 192 (192)
|.+|...++.++++ | ..+.|+|||.||.++++.+
T Consensus 623 Pe~K~~iV~~Lq~~-G-~vVamtGDGvNDaPALk~A 656 (903)
T PRK15122 623 PLQKSRVLKALQAN-G-HTVGFLGDGINDAPALRDA 656 (903)
T ss_pred HHHHHHHHHHHHhC-C-CEEEEECCCchhHHHHHhC
Confidence 45799999999875 5 4799999999999998753
No 141
>PRK10517 magnesium-transporting ATPase MgtA; Provisional
Probab=98.62 E-value=1.3e-07 Score=84.98 Aligned_cols=97 Identities=15% Similarity=0.231 Sum_probs=71.7
Q ss_pred CCChhHHHHHHHHHHCCCcEEEEcCCcHHhHHHHHHHcCCCCCcEEecc-eeEecCC---------eeeeccCCCCCcCC
Q 029504 88 RLSPGIDELVKKLKANNKNVYLISGGFRHMINPIASVLGIPPENIFANQ-LLFKSSG---------EFLGFDANEPTSRS 157 (192)
Q Consensus 88 ~~~~~~~e~l~~l~~~g~~~~IvS~~~~~~~~~~l~~~g~~~~~~~~~~-~~~~~~g---------~~~~~~~~~~~~~~ 157 (192)
.++|++++.++.|++.|+++.++||+....+..+++.+|+..+.++... +.--++. .+.. ...|
T Consensus 550 p~R~~a~~aI~~l~~aGI~v~miTGD~~~tA~~IA~~lGI~~~~v~~G~el~~l~~~el~~~~~~~~VfA------r~sP 623 (902)
T PRK10517 550 PPKETTAPALKALKASGVTVKILTGDSELVAAKVCHEVGLDAGEVLIGSDIETLSDDELANLAERTTLFA------RLTP 623 (902)
T ss_pred cchhhHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHcCCCccCceeHHHHHhCCHHHHHHHHhhCcEEE------EcCH
Confidence 5899999999999999999999999999999999999999633332211 1000000 0111 1224
Q ss_pred CCHHHHHHHHHHHcCCceEEEEeCCccchhhhccC
Q 029504 158 GGKAAAVQQIRKAHAYKVLAMIGDGATDLEVSIFI 192 (192)
Q Consensus 158 ~~K~~~l~~~~~~~g~~~~~~iGDs~~Di~~a~~~ 192 (192)
..|...++.++++ | ..+.|+|||.||.++++.+
T Consensus 624 e~K~~IV~~Lq~~-G-~vVam~GDGvNDaPALk~A 656 (902)
T PRK10517 624 MHKERIVTLLKRE-G-HVVGFMGDGINDAPALRAA 656 (902)
T ss_pred HHHHHHHHHHHHC-C-CEEEEECCCcchHHHHHhC
Confidence 5799999998865 5 3799999999999998753
No 142
>TIGR01517 ATPase-IIB_Ca plasma-membrane calcium-translocating P-type ATPase. The calcium P-type ATPases have been characterized as Type IIB based on a phylogenetic analysis which distinguishes this group from the Type IIA SERCA calcium pump. A separate analysis divides Type IIA into sub-types (SERCA and PMR1), which are modelled by the corresponding TIGR01116 and TIGR01522. This model is well separated from the two others.
Probab=98.62 E-value=1.5e-07 Score=85.13 Aligned_cols=96 Identities=22% Similarity=0.289 Sum_probs=70.9
Q ss_pred CCChhHHHHHHHHHHCCCcEEEEcCCcHHhHHHHHHHcCCCCCc--EEec-cee----------EecCCeeeeccCCCCC
Q 029504 88 RLSPGIDELVKKLKANNKNVYLISGGFRHMINPIASVLGIPPEN--IFAN-QLL----------FKSSGEFLGFDANEPT 154 (192)
Q Consensus 88 ~~~~~~~e~l~~l~~~g~~~~IvS~~~~~~~~~~l~~~g~~~~~--~~~~-~~~----------~~~~g~~~~~~~~~~~ 154 (192)
.++|++++.++.|++.|++++++||+....+..+.+.+|+.... ++.. .+. +. .-.+.. .
T Consensus 579 plr~~~~~aI~~l~~aGI~v~miTGD~~~tA~~iA~~~GI~~~~~~vi~G~~~~~l~~~el~~~i~-~~~Vfa------r 651 (941)
T TIGR01517 579 PLRPGVREAVQECQRAGITVRMVTGDNIDTAKAIARNCGILTFGGLAMEGKEFRRLVYEEMDPILP-KLRVLA------R 651 (941)
T ss_pred CCchhHHHHHHHHHHCCCEEEEECCCChHHHHHHHHHcCCCCCCceEeeHHHhhhCCHHHHHHHhc-cCeEEE------E
Confidence 68999999999999999999999999999999999999996321 1110 000 00 001111 1
Q ss_pred cCCCCHHHHHHHHHHHcCCceEEEEeCCccchhhhccC
Q 029504 155 SRSGGKAAAVQQIRKAHAYKVLAMIGDGATDLEVSIFI 192 (192)
Q Consensus 155 ~~~~~K~~~l~~~~~~~g~~~~~~iGDs~~Di~~a~~~ 192 (192)
..|.+|...++.++++ | ..+.|+|||.||.+|++.+
T Consensus 652 ~sPe~K~~iV~~lq~~-g-~vVam~GDGvNDapALk~A 687 (941)
T TIGR01517 652 SSPLDKQLLVLMLKDM-G-EVVAVTGDGTNDAPALKLA 687 (941)
T ss_pred CCHHHHHHHHHHHHHC-C-CEEEEECCCCchHHHHHhC
Confidence 2245899999998875 5 3899999999999998753
No 143
>smart00775 LNS2 LNS2 domain. This domain is found in Saccharomyces cerevisiae protein SMP2, proteins with an N-terminal lipin domain and phosphatidylinositol transfer proteins. SMP2 is involved in plasmid maintenance and respiration. Lipin proteins are involved in adipose tissue development and insulin resistance.
Probab=98.61 E-value=4.9e-07 Score=64.97 Aligned_cols=95 Identities=17% Similarity=0.223 Sum_probs=59.1
Q ss_pred CCChhHHHHHHHHHHCCCcEEEEcCCcHHhHH---HHHHH-----cCCCCCcEEecceeEecCCeeeeccCCCCCcCCC-
Q 029504 88 RLSPGIDELVKKLKANNKNVYLISGGFRHMIN---PIASV-----LGIPPENIFANQLLFKSSGEFLGFDANEPTSRSG- 158 (192)
Q Consensus 88 ~~~~~~~e~l~~l~~~g~~~~IvS~~~~~~~~---~~l~~-----~g~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~- 158 (192)
...|++.++++.++++|++++++|+.+...+. ..++. .+++...++. .+|.+......+......
T Consensus 27 ~~~~~~~~a~~~l~~~G~~ivy~TGRp~~~~~~t~~~l~~~~~~~~~lp~g~li~------~~g~~~~~~~~e~i~~~~~ 100 (157)
T smart00775 27 WTHPGVAKLYRDIQNNGYKILYLTARPIGQADRTRSYLSQIKQDGHNLPHGPVLL------SPDRLFAALHREVISKKPE 100 (157)
T ss_pred cCCHHHHHHHHHHHHcCCeEEEEcCCcHHHHHHHHHHHHHhhhccccCCCceEEE------cCCcchhhhhcccccCCHH
Confidence 46799999999999999999999999877663 66665 2344212222 123222100111111111
Q ss_pred -CHHHHHHHHHHHc---CCceEEEEeCCccchhh
Q 029504 159 -GKAAAVQQIRKAH---AYKVLAMIGDGATDLEV 188 (192)
Q Consensus 159 -~K~~~l~~~~~~~---g~~~~~~iGDs~~Di~~ 188 (192)
-|...++.+.+.+ +..-++.+||+.+|+.+
T Consensus 101 ~~K~~~l~~i~~~~~~~~~~f~~~~gn~~~D~~~ 134 (157)
T smart00775 101 VFKIACLRDIKSLFPPQGNPFYAGFGNRITDVIS 134 (157)
T ss_pred HHHHHHHHHHHHhcCCCCCCEEEEeCCCchhHHH
Confidence 3777888877643 33445679999999876
No 144
>PRK14501 putative bifunctional trehalose-6-phosphate synthase/HAD hydrolase subfamily IIB; Provisional
Probab=98.60 E-value=2.7e-07 Score=81.47 Aligned_cols=38 Identities=26% Similarity=0.331 Sum_probs=32.8
Q ss_pred CcCCCCHHHHHHHHHHHcCCceEEEEeCCccchhhhcc
Q 029504 154 TSRSGGKAAAVQQIRKAHAYKVLAMIGDGATDLEVSIF 191 (192)
Q Consensus 154 ~~~~~~K~~~l~~~~~~~g~~~~~~iGDs~~Di~~a~~ 191 (192)
.|.+.+|+.+++.+++..+.+.++++||+.||++|.++
T Consensus 652 ~p~~vnKG~al~~ll~~~~~d~vl~~GD~~nDe~Mf~~ 689 (726)
T PRK14501 652 RPAGVNKGRAVRRLLEAGPYDFVLAIGDDTTDEDMFRA 689 (726)
T ss_pred EECCCCHHHHHHHHHhcCCCCEEEEECCCCChHHHHHh
Confidence 45567999999999986556899999999999999875
No 145
>TIGR01675 plant-AP plant acid phosphatase. This model explicitly excludes the VSPs which lack the nucleophilc aspartate. The possibility exists, however, that some members of this family may, while containing all of the conserved HAD-superfamily catalytic residues, lack activity and have a function related to the function of the VSPs rather than the acid phosphatases.
Probab=98.55 E-value=2.5e-06 Score=64.68 Aligned_cols=132 Identities=14% Similarity=0.122 Sum_probs=84.7
Q ss_pred cCCcEEecCCCcccchhHh-hHHHHHHHHHHHHHHHhCCCccHHHHHHHHHhhcCCCHHHHHHHHHhCCCCCChhHHHHH
Q 029504 19 NGLPGCLASLFIENNSCLI-FLDGLTEFIFVFFARAMGGSVPFEEALAARLSLFKPSLSQVQDFLEKRPPRLSPGIDELV 97 (192)
Q Consensus 19 ~~k~iifD~~~~DGTL~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l 97 (192)
...+++|| +|.|++++ ....... .++ -.-......+++........|++.+++
T Consensus 76 g~~A~V~D---IDET~LsN~py~~~~~---------~g~--------------~~~~~~~~~~wv~~~~apaip~al~l~ 129 (229)
T TIGR01675 76 GMDAWIFD---VDDTLLSNIPYYKKHG---------YGT--------------EKTDPTAFWLWLGKGAAPALPEGLKLY 129 (229)
T ss_pred CCcEEEEc---cccccccCHHHHHHhc---------cCC--------------CcCCHHHHHHHHHcCCCCCCHHHHHHH
Confidence 56899999 99999997 3322000 000 001233455666665567999999999
Q ss_pred HHHHHCCCcEEEEcCCcHHh---HHHHHHHcCCCCCcEEecceeEecCCeeeeccCCCCCcCCCCHHHHHHHHHHHcCCc
Q 029504 98 KKLKANNKNVYLISGGFRHM---INPIASVLGIPPENIFANQLLFKSSGEFLGFDANEPTSRSGGKAAAVQQIRKAHAYK 174 (192)
Q Consensus 98 ~~l~~~g~~~~IvS~~~~~~---~~~~l~~~g~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~K~~~l~~~~~~~g~~ 174 (192)
+.++++|++++++|+..... ...-|...|++ .+ ..+.....+ ......-.-|...-+++.++ |+.
T Consensus 130 ~~l~~~G~~Vf~lTGR~e~~r~~T~~nL~~~G~~--~~--~~LiLR~~~-------d~~~~~~~yKs~~R~~l~~~-GYr 197 (229)
T TIGR01675 130 QKIIELGIKIFLLSGRWEELRNATLDNLINAGFT--GW--KHLILRGLE-------DSNKTVVTYKSEVRKSLMEE-GYR 197 (229)
T ss_pred HHHHHCCCEEEEEcCCChHHHHHHHHHHHHcCCC--Cc--CeeeecCCC-------CCCchHhHHHHHHHHHHHhC-Cce
Confidence 99999999999999998765 55666677887 22 223332100 00000011266666666654 667
Q ss_pred eEEEEeCCccchhh
Q 029504 175 VLAMIGDGATDLEV 188 (192)
Q Consensus 175 ~~~~iGDs~~Di~~ 188 (192)
-+..|||-.+|+..
T Consensus 198 Iv~~iGDq~sDl~G 211 (229)
T TIGR01675 198 IWGNIGDQWSDLLG 211 (229)
T ss_pred EEEEECCChHHhcC
Confidence 88999999999853
No 146
>TIGR01523 ATPase-IID_K-Na potassium and/or sodium efflux P-type ATPase, fungal-type. The Leishmania sequence (GP|3192903), which falls between trusted and noise in this model, may very well turn out to be an active potassium pump.
Probab=98.55 E-value=2.2e-07 Score=84.70 Aligned_cols=104 Identities=20% Similarity=0.235 Sum_probs=71.9
Q ss_pred CCCChhHHHHHHHHHHCCCcEEEEcCCcHHhHHHHHHHcCCCCCcEEecceeEecCCeeeeccCC---------------
Q 029504 87 PRLSPGIDELVKKLKANNKNVYLISGGFRHMINPIASVLGIPPENIFANQLLFKSSGEFLGFDAN--------------- 151 (192)
Q Consensus 87 ~~~~~~~~e~l~~l~~~g~~~~IvS~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~g~~~~~~~~--------------- 151 (192)
.+++|++++.++.|++.|++++++||+....+..+.+.+|+.........-.......++|....
T Consensus 645 Dp~r~~v~~aI~~l~~aGIkv~MiTGD~~~tA~~iA~~~Gi~~~~~~~~~~~~~~~~vitG~~l~~l~~~~l~~~~~~~~ 724 (1053)
T TIGR01523 645 DPPRNESAGAVEKCHQAGINVHMLTGDFPETAKAIAQEVGIIPPNFIHDRDEIMDSMVMTGSQFDALSDEEVDDLKALCL 724 (1053)
T ss_pred cCCchhHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHHcCCCCccccccccccccceeeehHHhhhcCHHHHHHHhhcCe
Confidence 36899999999999999999999999999999999999999632211100000000011111100
Q ss_pred -CCCcCCCCHHHHHHHHHHHcCCceEEEEeCCccchhhhccC
Q 029504 152 -EPTSRSGGKAAAVQQIRKAHAYKVLAMIGDGATDLEVSIFI 192 (192)
Q Consensus 152 -~~~~~~~~K~~~l~~~~~~~g~~~~~~iGDs~~Di~~a~~~ 192 (192)
.....|..|...++.++++ | ..+.|+|||.||.+|++.+
T Consensus 725 V~ar~sP~~K~~iV~~lq~~-g-~~Vam~GDGvNDapaLk~A 764 (1053)
T TIGR01523 725 VIARCAPQTKVKMIEALHRR-K-AFCAMTGDGVNDSPSLKMA 764 (1053)
T ss_pred EEEecCHHHHHHHHHHHHhc-C-CeeEEeCCCcchHHHHHhC
Confidence 0112345799999998875 5 3789999999999998753
No 147
>KOG3109 consensus Haloacid dehalogenase-like hydrolase [General function prediction only]
Probab=98.52 E-value=2.3e-06 Score=63.45 Aligned_cols=107 Identities=14% Similarity=0.252 Sum_probs=78.8
Q ss_pred HHHHHHHHHhCC----CCCChhHHHHHHHHHHCCCcEEEEcCCcHHhHHHHHHHcCCCCCcEEecceeEecCCeeeeccC
Q 029504 75 LSQVQDFLEKRP----PRLSPGIDELVKKLKANNKNVYLISGGFRHMINPIASVLGIPPENIFANQLLFKSSGEFLGFDA 150 (192)
Q Consensus 75 ~~~~~~~~~~~~----~~~~~~~~e~l~~l~~~g~~~~IvS~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~g~~~~~~~ 150 (192)
..+..+++.... ..|.+-.+.+|-.|++++ .++.|++....+.++++.+|+. ++|.....++......
T Consensus 83 ~deY~~~V~~~LPlq~LkPD~~LRnlLL~l~~r~--k~~FTNa~k~HA~r~Lk~LGie--DcFegii~~e~~np~~---- 154 (244)
T KOG3109|consen 83 ADEYHRFVHGRLPLQDLKPDPVLRNLLLSLKKRR--KWIFTNAYKVHAIRILKKLGIE--DCFEGIICFETLNPIE---- 154 (244)
T ss_pred HHHHHHHhhccCcHhhcCCCHHHHHHHHhCcccc--EEEecCCcHHHHHHHHHHhChH--HhccceeEeeccCCCC----
Confidence 556666666521 357778899999999887 8899999999999999999999 8898877665322110
Q ss_pred CCCCcCCCCHHHHHHHHHHHcCC---ceEEEEeCCccchhhhcc
Q 029504 151 NEPTSRSGGKAAAVQQIRKAHAY---KVLAMIGDGATDLEVSIF 191 (192)
Q Consensus 151 ~~~~~~~~~K~~~l~~~~~~~g~---~~~~~iGDs~~Di~~a~~ 191 (192)
....++| -.++.+...+..|+ .++++|-||.+-|..++.
T Consensus 155 ~~~vcKP--~~~afE~a~k~agi~~p~~t~FfDDS~~NI~~ak~ 196 (244)
T KOG3109|consen 155 KTVVCKP--SEEAFEKAMKVAGIDSPRNTYFFDDSERNIQTAKE 196 (244)
T ss_pred CceeecC--CHHHHHHHHHHhCCCCcCceEEEcCchhhHHHHHh
Confidence 1111122 24677777777787 789999999999988764
No 148
>PHA03398 viral phosphatase superfamily protein; Provisional
Probab=98.51 E-value=1.8e-07 Score=72.87 Aligned_cols=44 Identities=18% Similarity=0.169 Sum_probs=40.2
Q ss_pred CC-hhHHHHHHHHHHCCCcEEEEcCCcHHhHHHHHHHcCCCCCcEEe
Q 029504 89 LS-PGIDELVKKLKANNKNVYLISGGFRHMINPIASVLGIPPENIFA 134 (192)
Q Consensus 89 ~~-~~~~e~l~~l~~~g~~~~IvS~~~~~~~~~~l~~~g~~~~~~~~ 134 (192)
++ |++.++|+.|+++|++++|+|++.+..++..++.+|+. .+|.
T Consensus 148 irdp~V~EtL~eLkekGikLaIvTNg~Re~v~~~Le~lgL~--~yFD 192 (303)
T PHA03398 148 IRDPFVYDSLDELKERGCVLVLWSYGNREHVVHSLKETKLE--GYFD 192 (303)
T ss_pred cCChhHHHHHHHHHHCCCEEEEEcCCChHHHHHHHHHcCCC--cccc
Confidence 55 99999999999999999999999999999999999998 5554
No 149
>TIGR01116 ATPase-IIA1_Ca sarco/endoplasmic reticulum calcium-translocating P-type ATPase. The calcium P-type ATPases have been characterized as Type IIA based on a phylogenetic analysis which distinguishes this group from the Type IIB PMCA calcium pump modelled by TIGR01517. A separate analysis divides Type IIA into sub-types, SERCA and PMR1, the latter of which is modelled by TIGR01522.
Probab=98.51 E-value=4.2e-07 Score=82.05 Aligned_cols=97 Identities=19% Similarity=0.334 Sum_probs=68.5
Q ss_pred CCChhHHHHHHHHHHCCCcEEEEcCCcHHhHHHHHHHcCCCCCc------EEec-cee-Eec--------CCeeeeccCC
Q 029504 88 RLSPGIDELVKKLKANNKNVYLISGGFRHMINPIASVLGIPPEN------IFAN-QLL-FKS--------SGEFLGFDAN 151 (192)
Q Consensus 88 ~~~~~~~e~l~~l~~~g~~~~IvS~~~~~~~~~~l~~~g~~~~~------~~~~-~~~-~~~--------~g~~~~~~~~ 151 (192)
+++|++.+.++.|++.|++++++|++....+..+++.+|+...+ .+.. .+. .++ ...+..
T Consensus 537 plr~~v~e~I~~l~~aGI~v~miTGD~~~tA~~ia~~~gi~~~~~~v~~~~~~g~~l~~~~~~~~~~~~~~~~v~a---- 612 (917)
T TIGR01116 537 PPRPEVADAIEKCRTAGIRVIMITGDNKETAEAICRRIGIFSPDEDVTFKSFTGREFDEMGPAKQRAACRSAVLFS---- 612 (917)
T ss_pred CCchhHHHHHHHHHHCCCEEEEecCCCHHHHHHHHHHcCCCCCCccccceeeeHHHHhhCCHHHHHHhhhcCeEEE----
Confidence 58999999999999999999999999999999999999996311 1110 000 000 000111
Q ss_pred CCCcCCCCHHHHHHHHHHHcCCceEEEEeCCccchhhhccC
Q 029504 152 EPTSRSGGKAAAVQQIRKAHAYKVLAMIGDGATDLEVSIFI 192 (192)
Q Consensus 152 ~~~~~~~~K~~~l~~~~~~~g~~~~~~iGDs~~Di~~a~~~ 192 (192)
...|..|...++.+.+ .| +.+.|+|||.||++|++.+
T Consensus 613 --r~~P~~K~~iV~~lq~-~g-~~va~iGDG~ND~~alk~A 649 (917)
T TIGR01116 613 --RVEPSHKSELVELLQE-QG-EIVAMTGDGVNDAPALKKA 649 (917)
T ss_pred --ecCHHHHHHHHHHHHh-cC-CeEEEecCCcchHHHHHhC
Confidence 1123478888887764 45 4788899999999998753
No 150
>COG0474 MgtA Cation transport ATPase [Inorganic ion transport and metabolism]
Probab=98.51 E-value=3.6e-07 Score=82.36 Aligned_cols=103 Identities=23% Similarity=0.271 Sum_probs=74.3
Q ss_pred CCCChhHHHHHHHHHHCCCcEEEEcCCcHHhHHHHHHHcCCCCCcE---E--ecceeEecCCee----eeccCCCCCcCC
Q 029504 87 PRLSPGIDELVKKLKANNKNVYLISGGFRHMINPIASVLGIPPENI---F--ANQLLFKSSGEF----LGFDANEPTSRS 157 (192)
Q Consensus 87 ~~~~~~~~e~l~~l~~~g~~~~IvS~~~~~~~~~~l~~~g~~~~~~---~--~~~~~~~~~g~~----~~~~~~~~~~~~ 157 (192)
.+|+|++++.++.|++.|+++.++||+...++..+.+.+|+..+.. + +..+..-.+.++ .... ......|
T Consensus 546 Dppr~~v~~aI~~l~~AGI~v~MiTGD~~~TA~aIa~~~Gi~~~~~~~~vi~G~el~~l~~~el~~~~~~~~-VfARvsP 624 (917)
T COG0474 546 DPPREDVKEAIEELREAGIKVWMITGDHVETAIAIAKECGIEAEAESALVIDGAELDALSDEELAELVEELS-VFARVSP 624 (917)
T ss_pred CCCCccHHHHHHHHHHCCCcEEEECCCCHHHHHHHHHHcCCCCCCCceeEeehHHhhhcCHHHHHHHhhhCc-EEEEcCH
Confidence 4799999999999999999999999999999999999999876431 1 111100000000 0000 0012234
Q ss_pred CCHHHHHHHHHHHcCCceEEEEeCCccchhhhccC
Q 029504 158 GGKAAAVQQIRKAHAYKVLAMIGDGATDLEVSIFI 192 (192)
Q Consensus 158 ~~K~~~l~~~~~~~g~~~~~~iGDs~~Di~~a~~~ 192 (192)
..|...++.+++. | ..+.+.|||.||.+|+|.+
T Consensus 625 ~qK~~IV~~lq~~-g-~vVamtGDGvNDapALk~A 657 (917)
T COG0474 625 EQKARIVEALQKS-G-HVVAMTGDGVNDAPALKAA 657 (917)
T ss_pred HHHHHHHHHHHhC-C-CEEEEeCCCchhHHHHHhc
Confidence 6899999999887 6 4899999999999999853
No 151
>PRK10444 UMP phosphatase; Provisional
Probab=98.50 E-value=1.4e-06 Score=67.29 Aligned_cols=33 Identities=12% Similarity=0.131 Sum_probs=27.8
Q ss_pred CHHHHHHHHHHHcCC--ceEEEEeCCc-cchhhhcc
Q 029504 159 GKAAAVQQIRKAHAY--KVLAMIGDGA-TDLEVSIF 191 (192)
Q Consensus 159 ~K~~~l~~~~~~~g~--~~~~~iGDs~-~Di~~a~~ 191 (192)
.+...+..+++++++ ++|++|||+. +|+.+|+.
T Consensus 175 P~~~~~~~~~~~~~~~~~~~v~IGD~~~tDi~~A~~ 210 (248)
T PRK10444 175 PSPWIIRAALNKMQAHSEETVIVGDNLRTDILAGFQ 210 (248)
T ss_pred CCHHHHHHHHHHcCCCcccEEEECCCcHHHHHHHHH
Confidence 456778888888886 8999999997 89999864
No 152
>TIGR00685 T6PP trehalose-phosphatase. At least 18 distinct sequences from Arabidopsis have been identified, roughly half of these are of the fungal type, with a fused synthase and half are like the bacterial members having only the phosphatase domain. It has been suggested that trehalose is being used in Arabidopsis as a regulatory molecule in development and possibly other processes.
Probab=98.45 E-value=6e-07 Score=69.15 Aligned_cols=38 Identities=18% Similarity=0.113 Sum_probs=33.6
Q ss_pred CcCCCCHHHHHHHHHHHcCC--ceEEEEeCCccchhhhcc
Q 029504 154 TSRSGGKAAAVQQIRKAHAY--KVLAMIGDGATDLEVSIF 191 (192)
Q Consensus 154 ~~~~~~K~~~l~~~~~~~g~--~~~~~iGDs~~Di~~a~~ 191 (192)
.+.+.+|+.++..++++++. +.++++||+.||++|++.
T Consensus 162 ~p~~~~Kg~a~~~~~~~~~~~~~~~i~iGD~~~D~~~~~~ 201 (244)
T TIGR00685 162 KPRFVNKGEIVKRLLWHQPGSGISPVYLGDDITDEDAFRV 201 (244)
T ss_pred eeCCCCHHHHHHHHHHhcccCCCceEEEcCCCcHHHHHHH
Confidence 45567999999999999886 689999999999999874
No 153
>TIGR01457 HAD-SF-IIA-hyp2 HAD-superfamily subfamily IIA hydrolase, TIGR01457. This hypothetical equivalog is a member of the Class IIA subfamily of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. The sequences modelled by this equivalog are all gram positive (low-GC) bacteria. Sequences found in this model are annotated variously as related to NagD or 4-nitrophenyl phosphatase, and this hypothetical equivalog, of all of those within the Class IIA subfamily, is most closely related to the E. coli NagD enzyme and the PGP_euk equivalog (TIGR01452). However, there is presently no evidence that this hypothetical equivalog has the same function of either those.
Probab=98.44 E-value=7.9e-07 Score=68.69 Aligned_cols=33 Identities=21% Similarity=0.236 Sum_probs=27.5
Q ss_pred CHHHHHHHHHHHcCC--ceEEEEeCCc-cchhhhcc
Q 029504 159 GKAAAVQQIRKAHAY--KVLAMIGDGA-TDLEVSIF 191 (192)
Q Consensus 159 ~K~~~l~~~~~~~g~--~~~~~iGDs~-~Di~~a~~ 191 (192)
.+...+..+++.+++ +++++|||+. +|+.+|+.
T Consensus 179 P~~~~~~~~~~~~~~~~~~~~~VGD~~~~Di~~a~~ 214 (249)
T TIGR01457 179 PNAIIMEKAVEHLGTEREETLMVGDNYLTDIRAGID 214 (249)
T ss_pred ChHHHHHHHHHHcCCCcccEEEECCCchhhHHHHHH
Confidence 346778888888886 8899999997 89999864
No 154
>PLN02423 phosphomannomutase
Probab=98.42 E-value=2.7e-06 Score=65.57 Aligned_cols=36 Identities=19% Similarity=0.277 Sum_probs=30.5
Q ss_pred CCcCCCCHHHHHHHHHHHcCCceEEEEeC----Cccchhhhcc
Q 029504 153 PTSRSGGKAAAVQQIRKAHAYKVLAMIGD----GATDLEVSIF 191 (192)
Q Consensus 153 ~~~~~~~K~~~l~~~~~~~g~~~~~~iGD----s~~Di~~a~~ 191 (192)
.++.+.+|+.+++.++ ..+++++||| +.||++|++.
T Consensus 183 i~~~gvnKg~al~~L~---~~~e~~aFGD~~~~~~ND~eMl~~ 222 (245)
T PLN02423 183 VFPQGWDKTYCLQFLE---DFDEIHFFGDKTYEGGNDHEIFES 222 (245)
T ss_pred EeeCCCCHHHHHHHhc---CcCeEEEEeccCCCCCCcHHHHhC
Confidence 3555679999999999 4489999999 7999999874
No 155
>PF03767 Acid_phosphat_B: HAD superfamily, subfamily IIIB (Acid phosphatase); InterPro: IPR005519 This family of class B acid phosphatases also contains a number of vegetative storage proteins (VPS25). The acid phosphatase activity of VPS has been experimentally demonstrated [].; GO: 0003993 acid phosphatase activity; PDB: 3PCT_C 2I34_A 2I33_A 1Z5U_D 1Z5G_A 2AUT_C 1Z88_B 3OCV_A 3OCZ_A 3OCX_A ....
Probab=98.38 E-value=9.2e-07 Score=67.43 Aligned_cols=133 Identities=18% Similarity=0.232 Sum_probs=80.6
Q ss_pred cCCcEEecCCCcccchhHh-hHHHHHHHHHHHHHHHhCCCccHHHHHHHHHhhcCCCHHHHHHHHHhCCCCCChhHHHHH
Q 029504 19 NGLPGCLASLFIENNSCLI-FLDGLTEFIFVFFARAMGGSVPFEEALAARLSLFKPSLSQVQDFLEKRPPRLSPGIDELV 97 (192)
Q Consensus 19 ~~k~iifD~~~~DGTL~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l 97 (192)
...+|+|| +|+|++++ ........ . .... ..+...+++........|++.+++
T Consensus 71 ~~~avv~D---IDeTvLsn~~y~~~~~~-----~----------------~~~~--~~~~w~~wv~~~~~~aip~a~~l~ 124 (229)
T PF03767_consen 71 KPPAVVFD---IDETVLSNSPYYAYLIF-----G----------------GESF--SPEDWDEWVASGKAPAIPGALELY 124 (229)
T ss_dssp SEEEEEEE---SBTTTEEHHHHHHHHHH-----H----------------THHH---CCHHHHHHHCTGGEEETTHHHHH
T ss_pred CCcEEEEE---CCcccccCHHHHHHHhh-----c----------------cCCC--ChHHHHHHHhcccCcccHHHHHHH
Confidence 46889999 99999976 32211000 0 0000 112234555554346889999999
Q ss_pred HHHHHCCCcEEEEcCCcHHh---HHHHHHHcCCCCCcEEecceeEecCCeeeeccCCCCCcCCCCHHHHHHHHHHHcCCc
Q 029504 98 KKLKANNKNVYLISGGFRHM---INPIASVLGIPPENIFANQLLFKSSGEFLGFDANEPTSRSGGKAAAVQQIRKAHAYK 174 (192)
Q Consensus 98 ~~l~~~g~~~~IvS~~~~~~---~~~~l~~~g~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~K~~~l~~~~~~~g~~ 174 (192)
++++++|+.++++|+..... ...-|+..|+.. . ..+.+...+ ..........|...-+.+.+. |+.
T Consensus 125 ~~~~~~G~~V~~iT~R~~~~r~~T~~nL~~~G~~~--~--~~l~lr~~~------~~~~~~~~~yK~~~r~~i~~~-Gy~ 193 (229)
T PF03767_consen 125 NYARSRGVKVFFITGRPESQREATEKNLKKAGFPG--W--DHLILRPDK------DPSKKSAVEYKSERRKEIEKK-GYR 193 (229)
T ss_dssp HHHHHTTEEEEEEEEEETTCHHHHHHHHHHHTTST--B--SCGEEEEES------STSS------SHHHHHHHHHT-TEE
T ss_pred HHHHHCCCeEEEEecCCchhHHHHHHHHHHcCCCc--c--chhcccccc------ccccccccccchHHHHHHHHc-CCc
Confidence 99999999999999887653 344456678762 1 122111100 001111123588888888776 666
Q ss_pred eEEEEeCCccchhh
Q 029504 175 VLAMIGDGATDLEV 188 (192)
Q Consensus 175 ~~~~iGDs~~Di~~ 188 (192)
-++.|||..+|+..
T Consensus 194 Ii~~iGD~~~D~~~ 207 (229)
T PF03767_consen 194 IIANIGDQLSDFSG 207 (229)
T ss_dssp EEEEEESSGGGCHC
T ss_pred EEEEeCCCHHHhhc
Confidence 79999999999976
No 156
>PF12689 Acid_PPase: Acid Phosphatase; InterPro: IPR010036 This entry represents two closely related clades of sequences from eukaryotes and archaea. The mouse enzyme has been characterised as a phosphatase and has been positively identified as a member of the haloacid dehalogenase (HAD) superfamily by site-directed mutagenesis of the active site residues [, ].; GO: 0016791 phosphatase activity; PDB: 1U7P_A 1U7O_A 2WM8_A.
Probab=98.36 E-value=5.9e-07 Score=65.01 Aligned_cols=89 Identities=15% Similarity=0.179 Sum_probs=52.9
Q ss_pred CCCChhHHHHHHHHHHCCCcEEEEcC-CcHHhHHHHHHHcCCCCCcEEecceeEecCCeeeeccCCCCCcCCCCHHHHHH
Q 029504 87 PRLSPGIDELVKKLKANNKNVYLISG-GFRHMINPIASVLGIPPENIFANQLLFKSSGEFLGFDANEPTSRSGGKAAAVQ 165 (192)
Q Consensus 87 ~~~~~~~~e~l~~l~~~g~~~~IvS~-~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~K~~~l~ 165 (192)
..++|++.++|+.|+.+|++++++|. .....++.+|+.+++.. ........ ...+.. ....+.+|...++
T Consensus 44 v~lypdv~~iL~~L~~~gv~lavASRt~~P~~A~~~L~~l~i~~--~~~~~~~~--~~~F~~-----~eI~~gsK~~Hf~ 114 (169)
T PF12689_consen 44 VSLYPDVPEILQELKERGVKLAVASRTDEPDWARELLKLLEIDD--ADGDGVPL--IEYFDY-----LEIYPGSKTTHFR 114 (169)
T ss_dssp E---TTHHHHHHHHHHCT--EEEEE--S-HHHHHHHHHHTT-C--------------CCECE-----EEESSS-HHHHHH
T ss_pred EEeCcCHHHHHHHHHHCCCEEEEEECCCChHHHHHHHHhcCCCc--cccccccc--hhhcch-----hheecCchHHHHH
Confidence 46999999999999999999999995 44568999999999971 11111100 001111 1111348999999
Q ss_pred HHHHHcCC--ceEEEEeCCcc
Q 029504 166 QIRKAHAY--KVLAMIGDGAT 184 (192)
Q Consensus 166 ~~~~~~g~--~~~~~iGDs~~ 184 (192)
.+.+..|+ +++++|=|...
T Consensus 115 ~i~~~tgI~y~eMlFFDDe~~ 135 (169)
T PF12689_consen 115 RIHRKTGIPYEEMLFFDDESR 135 (169)
T ss_dssp HHHHHH---GGGEEEEES-HH
T ss_pred HHHHhcCCChhHEEEecCchh
Confidence 99999898 88999988754
No 157
>TIGR01106 ATPase-IIC_X-K sodium or proton efflux -- potassium uptake antiporter, P-type ATPase, alpha subunit. Sequences from Blastocladiella emersonii (GP|6636502, GP|6636502 and PIR|T43025), C. elegans (GP|2315419, GP|6671808 and PIR|T31763) and Drosophila melanogaster (GP|7291424) score below trusted cutoff, apparently due to long branch length (excessive divergence from the last common ancestor) as evidenced by a phylogenetic tree. Experimental evidence is needed to determine whether these sequences represent ATPases with conserved function. Aside from fragments, other sequences between trusted and noise appear to be bacterial ATPases of unclear lineage, but most likely calcium pumps.
Probab=98.33 E-value=2.3e-06 Score=77.97 Aligned_cols=103 Identities=18% Similarity=0.202 Sum_probs=70.0
Q ss_pred CCChhHHHHHHHHHHCCCcEEEEcCCcHHhHHHHHHHcCCCCCcEEe-----ccee--E---e--c--CCeeeeccCC--
Q 029504 88 RLSPGIDELVKKLKANNKNVYLISGGFRHMINPIASVLGIPPENIFA-----NQLL--F---K--S--SGEFLGFDAN-- 151 (192)
Q Consensus 88 ~~~~~~~e~l~~l~~~g~~~~IvS~~~~~~~~~~l~~~g~~~~~~~~-----~~~~--~---~--~--~g~~~~~~~~-- 151 (192)
+++|++++.++.++++|++++++||+....+..+++.+|+-.+..-. ..+. . . + .-.++|....
T Consensus 568 plr~~v~~aI~~l~~~Gi~v~~~TGd~~~ta~~ia~~~gi~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~vi~G~~l~~l 647 (997)
T TIGR01106 568 PPRAAVPDAVGKCRSAGIKVIMVTGDHPITAKAIAKGVGIISEGNETVEDIAARLNIPVSQVNPRDAKACVVHGSDLKDM 647 (997)
T ss_pred CChHHHHHHHHHHHHCCCeEEEECCCCHHHHHHHHHHcCCCCCCccchhhhhhhccccccccccccccceEEEhHHhhhC
Confidence 67999999999999999999999999999999999999984311000 0000 0 0 0 0011111100
Q ss_pred ----------------CCCcCCCCHHHHHHHHHHHcCCceEEEEeCCccchhhhccC
Q 029504 152 ----------------EPTSRSGGKAAAVQQIRKAHAYKVLAMIGDGATDLEVSIFI 192 (192)
Q Consensus 152 ----------------~~~~~~~~K~~~l~~~~~~~g~~~~~~iGDs~~Di~~a~~~ 192 (192)
-....|..|...++.+.+. |. .|.++|||.||.+|++.+
T Consensus 648 ~~~el~~~~~~~~~~VfaR~sPeqK~~IV~~lq~~-g~-vv~~~GDG~ND~paLk~A 702 (997)
T TIGR01106 648 TSEQLDEILKYHTEIVFARTSPQQKLIIVEGCQRQ-GA-IVAVTGDGVNDSPALKKA 702 (997)
T ss_pred CHHHHHHHHHhcCCEEEEECCHHHHHHHHHHHHHC-CC-EEEEECCCcccHHHHhhC
Confidence 0112345799999988764 53 799999999999999753
No 158
>PLN02205 alpha,alpha-trehalose-phosphate synthase [UDP-forming]
Probab=98.28 E-value=4.6e-06 Score=74.49 Aligned_cols=38 Identities=13% Similarity=0.207 Sum_probs=31.5
Q ss_pred CcCCCCHHHHHHHHHHH---cCC--ceEEEEeCCccchhhhcc
Q 029504 154 TSRSGGKAAAVQQIRKA---HAY--KVLAMIGDGATDLEVSIF 191 (192)
Q Consensus 154 ~~~~~~K~~~l~~~~~~---~g~--~~~~~iGDs~~Di~~a~~ 191 (192)
.+.+.+|+.+++.+++. +|. +.+++|||+.||.+|.+.
T Consensus 757 ~p~gvnKG~Al~~Ll~~~~~~g~~~d~vl~~GDD~nDedMF~~ 799 (854)
T PLN02205 757 KPQGVSKGLVAKRLLSIMQERGMLPDFVLCIGDDRSDEDMFEV 799 (854)
T ss_pred EeCCCCHHHHHHHHHHHHHhcCCCcccEEEEcCCccHHHHHHH
Confidence 55567999999999753 465 789999999999999875
No 159
>PLN02499 glycerol-3-phosphate acyltransferase
Probab=98.25 E-value=8e-05 Score=62.16 Aligned_cols=84 Identities=12% Similarity=0.131 Sum_probs=60.9
Q ss_pred HHHHHHHCCCcEEEEcCCcHHhHHHHHHH-cCCCCCcEEecceeEecCCeeeeccCCCCCcCCCCHHHHHHHHHHHcCC-
Q 029504 96 LVKKLKANNKNVYLISGGFRHMINPIASV-LGIPPENIFANQLLFKSSGEFLGFDANEPTSRSGGKAAAVQQIRKAHAY- 173 (192)
Q Consensus 96 ~l~~l~~~g~~~~IvS~~~~~~~~~~l~~-~g~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~K~~~l~~~~~~~g~- 173 (192)
.++.++++| +++|+|+.++.+++.+++. +|++ .++++++.+.+.|.++|...+... ..+....+.+.+|-
T Consensus 101 ~~~~~~~~g-~~vVVTAsPrvmVEpFake~LG~D--~VvGTEL~v~~~G~~TG~~~G~n~-----~ek~~~rl~~~~g~~ 172 (498)
T PLN02499 101 AWKVFSSCD-KRVVVTRMPRVMVERFAKEHLRAD--EVIGSELVVNRFGFATGFIRGTDV-----DQSVANRVANLFVDE 172 (498)
T ss_pred HHHHHHcCC-eEEEEeCCHHHHHHHHHHHhcCCc--eEEeeeEEEeeccEEEEEEecCcc-----HHHHHHHHHHHhCcc
Confidence 556667788 9999999999999999997 9998 888999988866999997654321 11223444444453
Q ss_pred ceEEEEeCCccchh
Q 029504 174 KVLAMIGDGATDLE 187 (192)
Q Consensus 174 ~~~~~iGDs~~Di~ 187 (192)
...+-+||+..|-+
T Consensus 173 ~~~vg~~~~~~~~~ 186 (498)
T PLN02499 173 RPQLGLGRISASSS 186 (498)
T ss_pred CceecccCCcccch
Confidence 45777888776644
No 160
>PF08645 PNK3P: Polynucleotide kinase 3 phosphatase; InterPro: IPR013954 Polynucleotide kinase 3 phosphatases play a role in the repair of single breaks in DNA induced by DNA-damaging agents such as gamma radiation and camptothecin []. ; PDB: 2FPW_A 2FPR_A 2FPX_A 2FPS_A 2FPU_B 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B 3U7G_A ....
Probab=98.25 E-value=6.1e-07 Score=64.59 Aligned_cols=81 Identities=19% Similarity=0.284 Sum_probs=49.6
Q ss_pred CChhHHHHHHHHHHCCCcEEEEcCCc--------------HHhHHHHHHHcCCCCCcEEecceeEecCCeeeeccCCCCC
Q 029504 89 LSPGIDELVKKLKANNKNVYLISGGF--------------RHMINPIASVLGIPPENIFANQLLFKSSGEFLGFDANEPT 154 (192)
Q Consensus 89 ~~~~~~e~l~~l~~~g~~~~IvS~~~--------------~~~~~~~l~~~g~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 154 (192)
+.|++.+.|+.+.+.|+.++|+||-. ...++.+++.++++. .++...- . ...++
T Consensus 30 ~~~~v~~~L~~l~~~Gy~IvIvTNQ~gi~~~~~~~~~~~~~~ki~~il~~l~ip~-~~~~a~~----~-------d~~RK 97 (159)
T PF08645_consen 30 FPPGVPEALRELHKKGYKIVIVTNQSGIGRGMGEKDLENFHEKIENILKELGIPI-QVYAAPH----K-------DPCRK 97 (159)
T ss_dssp C-TTHHHHHHHHHHTTEEEEEEEE-CCCCCTBTCCHHHHHHHHHHHHHHHCTS-E-EEEECGC----S-------STTST
T ss_pred cchhHHHHHHHHHhcCCeEEEEeCccccccccccchHHHHHHHHHHHHHHcCCce-EEEecCC----C-------CCCCC
Confidence 55789999999999999999998641 123567778888873 2222110 0 01222
Q ss_pred cCCCCHHHHHHHHHHHcC----C--ceEEEEeCCccc
Q 029504 155 SRSGGKAAAVQQIRKAHA----Y--KVLAMIGDGATD 185 (192)
Q Consensus 155 ~~~~~K~~~l~~~~~~~g----~--~~~~~iGDs~~D 185 (192)
| +.-+++.+.+.++ + ++++||||+.++
T Consensus 98 P----~~GM~~~~~~~~~~~~~id~~~Sf~VGDaagr 130 (159)
T PF08645_consen 98 P----NPGMWEFALKDYNDGVEIDLANSFYVGDAAGR 130 (159)
T ss_dssp T----SSHHHHHHCCCTSTT--S-CCC-EEEESSCHC
T ss_pred C----chhHHHHHHHhccccccccccceEEEeccCCC
Confidence 2 2355666666553 2 889999998554
No 161
>TIGR01652 ATPase-Plipid phospholipid-translocating P-type ATPase, flippase. This model describes the P-type ATPase responsible for transporting phospholipids from one leaflet of bilayer membranes to the other. These ATPases are found only in eukaryotes.
Probab=98.24 E-value=3e-06 Score=77.69 Aligned_cols=103 Identities=19% Similarity=0.252 Sum_probs=72.3
Q ss_pred CCCChhHHHHHHHHHHCCCcEEEEcCCcHHhHHHHHHHcCCCCCc--EE--ec---------------------------
Q 029504 87 PRLSPGIDELVKKLKANNKNVYLISGGFRHMINPIASVLGIPPEN--IF--AN--------------------------- 135 (192)
Q Consensus 87 ~~~~~~~~e~l~~l~~~g~~~~IvS~~~~~~~~~~l~~~g~~~~~--~~--~~--------------------------- 135 (192)
..++||+.+.++.|++.|++++++||+...++..+++.+|+-..+ .+ ..
T Consensus 630 D~lq~~v~etI~~L~~AGIkv~mlTGD~~~TA~~IA~~~~ii~~~~~~~~i~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 709 (1057)
T TIGR01652 630 DKLQEGVPETIELLRQAGIKIWVLTGDKVETAINIGYSCRLLSRNMEQIVITSESLDATRSVEAAIKFGLEGTSEEFNNL 709 (1057)
T ss_pred hhhhhccHHHHHHHHHCCCeEEEEcCCcHHHHHHHHHHhCCCCCCCeEEEEecCchhhhHHHHHHHHHHHHHHHHhhhhh
Confidence 368999999999999999999999999999999999999875321 11 00
Q ss_pred ------ceeEecCCee-e---e-c----------cC---CCCCcCCCCHHHHHHHHHHHcCCceEEEEeCCccchhhhcc
Q 029504 136 ------QLLFKSSGEF-L---G-F----------DA---NEPTSRSGGKAAAVQQIRKAHAYKVLAMIGDGATDLEVSIF 191 (192)
Q Consensus 136 ------~~~~~~~g~~-~---~-~----------~~---~~~~~~~~~K~~~l~~~~~~~g~~~~~~iGDs~~Di~~a~~ 191 (192)
.+.++ |.- . . . .. -.....|..|+..++.+.+..| ..+.++|||.||.+|.+.
T Consensus 710 ~~~~~~~lvi~--G~~l~~~l~~~~~~~f~~l~~~~~~vV~aR~sP~qK~~IV~~lk~~~~-~~vl~iGDG~ND~~mlk~ 786 (1057)
T TIGR01652 710 GDSGNVALVID--GKSLGYALDEELEKEFLQLALKCKAVICCRVSPSQKADVVRLVKKSTG-KTTLAIGDGANDVSMIQE 786 (1057)
T ss_pred ccCCceEEEEc--cHHHHHHHhhHHHHHHHHHHhhCCEEEEeCCCHHHHHHHHHHHHhcCC-CeEEEEeCCCccHHHHhh
Confidence 01111 100 0 0 0 00 0112334689999988887545 489999999999999885
Q ss_pred C
Q 029504 192 I 192 (192)
Q Consensus 192 ~ 192 (192)
+
T Consensus 787 A 787 (1057)
T TIGR01652 787 A 787 (1057)
T ss_pred c
Confidence 3
No 162
>TIGR01680 Veg_Stor_Prot vegetative storage protein. The proteins represented by this model are close relatives of the plant acid phosphatases (TIGR01675), are limited to members of the Phaseoleae including Glycine max (soybean) and Phaseolus vulgaris (kidney bean). These proteins are highly expressed in the leaves of repeatedly depodded plants. VSP differs most strinkingly from the acid phosphatases in the lack of the conserved nucleophilic aspartate residue in the N-terminus, thus, they should be inactive as phosphatases. This issue was confused by the publication in 1992 of an article claiming activity for the Glycine max VSP. In 1994 this assertion was refuted by the separation of the activity from the VSP.
Probab=98.23 E-value=2.5e-05 Score=60.40 Aligned_cols=133 Identities=16% Similarity=0.162 Sum_probs=79.2
Q ss_pred cCCcEEecCCCcccchhHh-hHHHHHHHHHHHHHHHhCCCccHHHHHHHHHhhcCCCHHHHH-HHHHhCCCCCChhHHHH
Q 029504 19 NGLPGCLASLFIENNSCLI-FLDGLTEFIFVFFARAMGGSVPFEEALAARLSLFKPSLSQVQ-DFLEKRPPRLSPGIDEL 96 (192)
Q Consensus 19 ~~k~iifD~~~~DGTL~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~e~ 96 (192)
...+++|| +|+|++++ ..... ...++. . -..+... +++........|++.++
T Consensus 100 ~~dA~V~D---IDET~LsN~pY~~~---------~~~g~e-~-------------~~~~~w~~~Wv~~~~ApAlp~al~l 153 (275)
T TIGR01680 100 EKDTFLFN---IDGTALSNIPYYKK---------HGYGSE-K-------------FDSELYDEEFVNKGEAPALPETLKN 153 (275)
T ss_pred CCCEEEEE---CccccccCHHHHHH---------hcCCCC-c-------------CChhhhhHHHHhcccCCCChHHHHH
Confidence 56899999 99999987 32220 000000 0 0122334 55666556789999999
Q ss_pred HHHHHHCCCcEEEEcCCcHHhH---HHHHHHcCCCCCcEEecceeEecCCeeeeccCCCCCcCCCCHHHHHHHHHHHcCC
Q 029504 97 VKKLKANNKNVYLISGGFRHMI---NPIASVLGIPPENIFANQLLFKSSGEFLGFDANEPTSRSGGKAAAVQQIRKAHAY 173 (192)
Q Consensus 97 l~~l~~~g~~~~IvS~~~~~~~---~~~l~~~g~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~K~~~l~~~~~~~g~ 173 (192)
.+++++.|++++++|+...... ..-|+..|++. + ..+.....+.. .....-.-|...-.++.+ -|+
T Consensus 154 y~~l~~~G~kIf~VSgR~e~~r~aT~~NL~kaGy~~--~--~~LiLR~~~D~------~~~~av~yKs~~R~~li~-eGY 222 (275)
T TIGR01680 154 YNKLVSLGFKIIFLSGRLKDKQAVTEANLKKAGYHT--W--EKLILKDPQDN------SAENAVEYKTAARAKLIQ-EGY 222 (275)
T ss_pred HHHHHHCCCEEEEEeCCchhHHHHHHHHHHHcCCCC--c--ceeeecCCCCC------ccchhHHHHHHHHHHHHH-cCc
Confidence 9999999999999999976533 33445567762 1 22333211100 000000124444445444 366
Q ss_pred ceEEEEeCCccchhh
Q 029504 174 KVLAMIGDGATDLEV 188 (192)
Q Consensus 174 ~~~~~iGDs~~Di~~ 188 (192)
.-+..|||-.+|+..
T Consensus 223 rIv~~iGDq~sDl~G 237 (275)
T TIGR01680 223 NIVGIIGDQWNDLKG 237 (275)
T ss_pred eEEEEECCCHHhccC
Confidence 788999999999863
No 163
>PF09419 PGP_phosphatase: Mitochondrial PGP phosphatase; InterPro: IPR010021 This group of hypothetical proteins is a part of the IIIA subfamily of the haloacid dehalogenase (HAD) superfamily of hydrolases. All characterised members of this subfamily and most characterised members of the HAD superfamily are phosphatases. HAD superfamily phosphatases contain active site residues in several conserved catalytic motifs [], all of which are found conserved here. This family consists of sequences from fungi, plants, cyanobacteria, Gram-positive bacteria and Deinococcus. There is presently no characterisation of any sequence in this family.
Probab=98.19 E-value=9.7e-06 Score=58.56 Aligned_cols=83 Identities=20% Similarity=0.345 Sum_probs=56.4
Q ss_pred CCChhHHHHHHHHHHCCCc--EEEEcCC-------cHHhHHHHHHHcCCCCCcEEecceeEecCCeeeeccCCCCCcCCC
Q 029504 88 RLSPGIDELVKKLKANNKN--VYLISGG-------FRHMINPIASVLGIPPENIFANQLLFKSSGEFLGFDANEPTSRSG 158 (192)
Q Consensus 88 ~~~~~~~e~l~~l~~~g~~--~~IvS~~-------~~~~~~~~l~~~g~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 158 (192)
.+.|.+.+.++.+++.+.. ++|+||+ ...-++.+.+.+|++ ++... ..+|.
T Consensus 59 ~i~~~~~~~~~~l~~~~~~~~v~IvSNsaGs~~d~~~~~a~~~~~~lgIp---vl~h~-----------------~kKP~ 118 (168)
T PF09419_consen 59 EIPPEYAEWLNELKKQFGKDRVLIVSNSAGSSDDPDGERAEALEKALGIP---VLRHR-----------------AKKPG 118 (168)
T ss_pred cCCHHHHHHHHHHHHHCCCCeEEEEECCCCcccCccHHHHHHHHHhhCCc---EEEeC-----------------CCCCc
Confidence 3668888889999998764 9999998 366778888899986 22211 11123
Q ss_pred CHHHHHHHHHHHcC---CceEEEEeCCc-cchhhhc
Q 029504 159 GKAAAVQQIRKAHA---YKVLAMIGDGA-TDLEVSI 190 (192)
Q Consensus 159 ~K~~~l~~~~~~~g---~~~~~~iGDs~-~Di~~a~ 190 (192)
+..+.++.+....+ .+++++|||-. +|+-|+.
T Consensus 119 ~~~~i~~~~~~~~~~~~p~eiavIGDrl~TDVl~gN 154 (168)
T PF09419_consen 119 CFREILKYFKCQKVVTSPSEIAVIGDRLFTDVLMGN 154 (168)
T ss_pred cHHHHHHHHhhccCCCCchhEEEEcchHHHHHHHhh
Confidence 44555555544311 37999999995 7887764
No 164
>PF13344 Hydrolase_6: Haloacid dehalogenase-like hydrolase; PDB: 2HO4_B 1YV9_A 1WVI_B 3EPR_A 2P27_A 2OYC_A 2CFT_A 2P69_A 2CFS_A 2CFR_A ....
Probab=98.19 E-value=1.5e-05 Score=52.92 Aligned_cols=41 Identities=24% Similarity=0.344 Sum_probs=31.3
Q ss_pred CCChhHHHHHHHHHHCCCcEEEEcCCcHHh---HHHHHHHcCCC
Q 029504 88 RLSPGIDELVKKLKANNKNVYLISGGFRHM---INPIASVLGIP 128 (192)
Q Consensus 88 ~~~~~~~e~l~~l~~~g~~~~IvS~~~~~~---~~~~l~~~g~~ 128 (192)
.+.||+.+++++|+++|.+++++||+.... ....++.+|++
T Consensus 14 ~~ipga~e~l~~L~~~g~~~~~lTNns~~s~~~~~~~L~~~Gi~ 57 (101)
T PF13344_consen 14 EPIPGAVEALDALRERGKPVVFLTNNSSRSREEYAKKLKKLGIP 57 (101)
T ss_dssp EE-TTHHHHHHHHHHTTSEEEEEES-SSS-HHHHHHHHHHTTTT
T ss_pred CcCcCHHHHHHHHHHcCCCEEEEeCCCCCCHHHHHHHHHhcCcC
Confidence 477999999999999999999999886433 34444778887
No 165
>TIGR01657 P-ATPase-V P-type ATPase of unknown pump specificity (type V). These P-type ATPases form a distinct clade but the substrate of their pumping activity has yet to be determined. This clade has been designated type V in.
Probab=98.19 E-value=6.2e-06 Score=75.64 Aligned_cols=41 Identities=27% Similarity=0.352 Sum_probs=39.5
Q ss_pred CCChhHHHHHHHHHHCCCcEEEEcCCcHHhHHHHHHHcCCC
Q 029504 88 RLSPGIDELVKKLKANNKNVYLISGGFRHMINPIASVLGIP 128 (192)
Q Consensus 88 ~~~~~~~e~l~~l~~~g~~~~IvS~~~~~~~~~~l~~~g~~ 128 (192)
+++|++++.++.|++.|+++.++||+...++..+++.+|+-
T Consensus 656 ~lr~~~~~~I~~l~~agi~v~miTGD~~~TA~~iA~~~gii 696 (1054)
T TIGR01657 656 PLKPDTKEVIKELKRASIRTVMITGDNPLTAVHVARECGIV 696 (1054)
T ss_pred CCCccHHHHHHHHHHCCCeEEEECCCCHHHHHHHHHHcCCC
Confidence 58999999999999999999999999999999999999995
No 166
>COG4996 Predicted phosphatase [General function prediction only]
Probab=98.16 E-value=5.5e-06 Score=56.55 Aligned_cols=79 Identities=18% Similarity=0.158 Sum_probs=61.5
Q ss_pred CCCChhHHHHHHHHHHCCCcEEEEcCCcHHhHHHHHHHcCCCCCcEEecceeEecCCeeeeccCCCCCcCCCCHHHHHHH
Q 029504 87 PRLSPGIDELVKKLKANNKNVYLISGGFRHMINPIASVLGIPPENIFANQLLFKSSGEFLGFDANEPTSRSGGKAAAVQQ 166 (192)
Q Consensus 87 ~~~~~~~~e~l~~l~~~g~~~~IvS~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~K~~~l~~ 166 (192)
.+++|+++++++++++.|+-+...|=+..+.+-..++.+++. .+|.-.+ .+|.| -|..++.+
T Consensus 40 v~L~~~v~~~l~warnsG~i~~~~sWN~~~kA~~aLral~~~--~yFhy~V-------------iePhP---~K~~ML~~ 101 (164)
T COG4996 40 VHLFPDVKETLKWARNSGYILGLASWNFEDKAIKALRALDLL--QYFHYIV-------------IEPHP---YKFLMLSQ 101 (164)
T ss_pred EEEcHHHHHHHHHHHhCCcEEEEeecCchHHHHHHHHHhchh--hhEEEEE-------------ecCCC---hhHHHHHH
Confidence 579999999999999999999999988888888889999998 7887544 12222 47777777
Q ss_pred HHHHc----C--C--ceEEEEeCCc
Q 029504 167 IRKAH----A--Y--KVLAMIGDGA 183 (192)
Q Consensus 167 ~~~~~----g--~--~~~~~iGDs~ 183 (192)
++.+. + + ++++|+-|..
T Consensus 102 llr~i~~er~~~ikP~~Ivy~DDR~ 126 (164)
T COG4996 102 LLREINTERNQKIKPSEIVYLDDRR 126 (164)
T ss_pred HHHHHHHhhccccCcceEEEEeccc
Confidence 66543 2 2 7899998864
No 167
>TIGR01494 ATPase_P-type ATPase, P-type (transporting), HAD superfamily, subfamily IC. The crystal structure of one calcium-pumping ATPase and an analysis of the fold of the catalytic domain of the P-type ATPases have been published. These reveal that the catalytic core of these enzymes is a haloacid dehalogenase(HAD)-type aspartate-nucleophile hydrolase. The location of the ATP-binding loop in between the first and second HAD conserved catalytic motifs defines these enzymes as members of subfamily I of the HAD superfamily (see also TIGR01493, TIGR01509, TIGR01549, TIGR01544 and TIGR01545). Based on these classifications, the P-type ATPase _superfamily_ corresponds to the IC subfamily of the HAD superfamily.
Probab=98.15 E-value=7.8e-06 Score=69.32 Aligned_cols=78 Identities=29% Similarity=0.369 Sum_probs=66.4
Q ss_pred CCChhHHHHHHHHHHCCCcEEEEcCCcHHhHHHHHHHcCCCCCcEEecceeEecCCeeeeccCCCCCcCCCCHHHHHHHH
Q 029504 88 RLSPGIDELVKKLKANNKNVYLISGGFRHMINPIASVLGIPPENIFANQLLFKSSGEFLGFDANEPTSRSGGKAAAVQQI 167 (192)
Q Consensus 88 ~~~~~~~e~l~~l~~~g~~~~IvS~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~K~~~l~~~ 167 (192)
.++|++.+.++.|++.|++++++|++....+..+.+.+|+. +. ..|..|.+.++++
T Consensus 347 ~lr~~~~~~i~~l~~~gi~~~~ltGD~~~~a~~ia~~lgi~-----~~-------------------~~p~~K~~~v~~l 402 (499)
T TIGR01494 347 PLRDDAKETISELREAGIRVIMLTGDNVLTAKAIAKELGIF-----AR-------------------VTPEEKAALVEAL 402 (499)
T ss_pred CCchhHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHcCce-----ec-------------------cCHHHHHHHHHHH
Confidence 68999999999999999999999999999999999999871 10 1235799999998
Q ss_pred HHHcCCceEEEEeCCccchhhhcc
Q 029504 168 RKAHAYKVLAMIGDGATDLEVSIF 191 (192)
Q Consensus 168 ~~~~g~~~~~~iGDs~~Di~~a~~ 191 (192)
+++ | ..+.++||+.||.++.+.
T Consensus 403 ~~~-g-~~v~~vGDg~nD~~al~~ 424 (499)
T TIGR01494 403 QKK-G-RVVAMTGDGVNDAPALKK 424 (499)
T ss_pred HHC-C-CEEEEECCChhhHHHHHh
Confidence 755 4 489999999999998764
No 168
>KOG0202 consensus Ca2+ transporting ATPase [Inorganic ion transport and metabolism]
Probab=98.12 E-value=1.4e-05 Score=69.60 Aligned_cols=96 Identities=20% Similarity=0.298 Sum_probs=71.1
Q ss_pred CCCChhHHHHHHHHHHCCCcEEEEcCCcHHhHHHHHHHcCCCCCcE-EecceeEecCCeeeeccCCCC------------
Q 029504 87 PRLSPGIDELVKKLKANNKNVYLISGGFRHMINPIASVLGIPPENI-FANQLLFKSSGEFLGFDANEP------------ 153 (192)
Q Consensus 87 ~~~~~~~~e~l~~l~~~g~~~~IvS~~~~~~~~~~l~~~g~~~~~~-~~~~~~~~~~g~~~~~~~~~~------------ 153 (192)
.+|+|++++.++.|++.|+.+.++||+...+++.+.+..|+..++- ++. -.++|......
T Consensus 583 DPPR~ev~~ai~~c~~aGIrV~mITGD~~~TA~AI~r~iGi~~~~ed~~~-------~~~TG~efD~ls~~~~~~~~~~~ 655 (972)
T KOG0202|consen 583 DPPRPEVADAIELCRQAGIRVIMITGDNKETAEAIAREIGIFSEDEDVSS-------MALTGSEFDDLSDEELDDAVRRV 655 (972)
T ss_pred CCCchhHHHHHHHHHHcCCEEEEEcCCCHHHHHHHHHHhCCCcCCccccc-------cccchhhhhcCCHHHHHHHhhcc
Confidence 4799999999999999999999999999999999999999864211 111 11122111110
Q ss_pred ----CcCCCCHHHHHHHHHHHcCCceEEEEeCCccchhhhcc
Q 029504 154 ----TSRSGGKAAAVQQIRKAHAYKVLAMIGDGATDLEVSIF 191 (192)
Q Consensus 154 ----~~~~~~K~~~l~~~~~~~g~~~~~~iGDs~~Di~~a~~ 191 (192)
...|..|.++++.+.+. | +-+.|-|||.||.+++|.
T Consensus 656 ~vFaR~~P~HK~kIVeaLq~~-g-eivAMTGDGVNDApALK~ 695 (972)
T KOG0202|consen 656 LVFARAEPQHKLKIVEALQSR-G-EVVAMTGDGVNDAPALKK 695 (972)
T ss_pred eEEEecCchhHHHHHHHHHhc-C-CEEEecCCCccchhhhhh
Confidence 12235688888888765 4 579999999999999875
No 169
>COG2503 Predicted secreted acid phosphatase [General function prediction only]
Probab=98.11 E-value=4.5e-05 Score=57.57 Aligned_cols=125 Identities=18% Similarity=0.277 Sum_probs=82.1
Q ss_pred CCcEEecCCCcccchhHh-hHHHHHHHHHHHHHHHhCCCccHHHHHHHHHhhcCCCHHHHHHHHHhCCCCCChhHHHHHH
Q 029504 20 GLPGCLASLFIENNSCLI-FLDGLTEFIFVFFARAMGGSVPFEEALAARLSLFKPSLSQVQDFLEKRPPRLSPGIDELVK 98 (192)
Q Consensus 20 ~k~iifD~~~~DGTL~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~ 98 (192)
.++|+.| +|-|++|. ......- .....-+.+.-..|+......+.||+.||++
T Consensus 79 ~~aVvlD---lDETvLdNs~Yqgy~v-----------------------~nnk~f~pe~Wd~wV~a~~sk~vpGA~eFl~ 132 (274)
T COG2503 79 KKAVVLD---LDETVLDNSAYQGYQV-----------------------LNNKGFTPETWDKWVQAKKSKAVPGAVEFLN 132 (274)
T ss_pred CceEEEe---cchHhhcCccccchhh-----------------------hcCCCCCccchHHHHhhcccccCccHHHHHH
Confidence 4699999 99999997 3322000 0000012333355565555678999999999
Q ss_pred HHHHCCCcEEEEcCCcHHh----HHHHHHHcCCCCCcEEecceeEecCCeeeeccCCCCCcCCCCHHHHHHHHHHHcCCc
Q 029504 99 KLKANNKNVYLISGGFRHM----INPIASVLGIPPENIFANQLLFKSSGEFLGFDANEPTSRSGGKAAAVQQIRKAHAYK 174 (192)
Q Consensus 99 ~l~~~g~~~~IvS~~~~~~----~~~~l~~~g~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~K~~~l~~~~~~~g~~ 174 (192)
+.-++|..++-+|+..... ...-|...|++ .+-...+.+.. ...+|....+.+.+. ++
T Consensus 133 Yvn~~Gg~ifyiSNR~~~~~~~~T~~nLk~~g~~--~~~~~~~llkk--------------~~k~Ke~R~~~v~k~--~~ 194 (274)
T COG2503 133 YVNSNGGKIFYISNRDQENEKDGTIENLKSEGLP--QVLESHLLLKK--------------DKKSKEVRRQAVEKD--YK 194 (274)
T ss_pred HHHhcCcEEEEEeccchhcccchhHHHHHHcCcc--cccccceEEee--------------CCCcHHHHHHHHhhc--cc
Confidence 9999999999999987765 33345567887 44444443321 113577777777664 45
Q ss_pred eEEEEeCCccchhh
Q 029504 175 VLAMIGDGATDLEV 188 (192)
Q Consensus 175 ~~~~iGDs~~Di~~ 188 (192)
-++.|||...|..-
T Consensus 195 iVm~vGDNl~DF~d 208 (274)
T COG2503 195 IVMLVGDNLDDFGD 208 (274)
T ss_pred eeeEecCchhhhcc
Confidence 89999999988653
No 170
>KOG0206 consensus P-type ATPase [General function prediction only]
Probab=98.09 E-value=8.4e-06 Score=73.95 Aligned_cols=43 Identities=16% Similarity=0.292 Sum_probs=37.3
Q ss_pred CCCCChhHHHHHHHHHHCCCcEEEEcCCcHHhHHHHHHHcCCC
Q 029504 86 PPRLSPGIDELVKKLKANNKNVYLISGGFRHMINPIASVLGIP 128 (192)
Q Consensus 86 ~~~~~~~~~e~l~~l~~~g~~~~IvS~~~~~~~~~~l~~~g~~ 128 (192)
+.++.+|++|.|..|++.|+++++.||+..+++-.+.-.+++-
T Consensus 649 EDkLQdgVPetI~~L~~AGIKIWVLTGDK~ETAiNIg~sC~Ll 691 (1151)
T KOG0206|consen 649 EDKLQDGVPETIAKLAQAGIKIWVLTGDKQETAINIGYSCRLL 691 (1151)
T ss_pred echhccCchHHHHHHHHcCCEEEEEcCcHHHHHHHHHHhhcCC
Confidence 3578999999999999999999999999999887777666554
No 171
>PTZ00445 p36-lilke protein; Provisional
Probab=98.09 E-value=3.6e-05 Score=57.22 Aligned_cols=102 Identities=12% Similarity=0.169 Sum_probs=67.9
Q ss_pred CCChhHHHHHHHHHHCCCcEEEEcCCcHH---------------hHHHHHHHcC--CCCCcEEeccee-EecCCeeeecc
Q 029504 88 RLSPGIDELVKKLKANNKNVYLISGGFRH---------------MINPIASVLG--IPPENIFANQLL-FKSSGEFLGFD 149 (192)
Q Consensus 88 ~~~~~~~e~l~~l~~~g~~~~IvS~~~~~---------------~~~~~l~~~g--~~~~~~~~~~~~-~~~~g~~~~~~ 149 (192)
...|.++.++..+++.|++++|||=+... .++..++.-+ ...+.+++-... +++...+..
T Consensus 75 ~~tpefk~~~~~l~~~~I~v~VVTfSd~~~~~~~~~~~~Isg~~li~~~lk~s~~~~~i~~~~~yyp~~w~~p~~y~~-- 152 (219)
T PTZ00445 75 SVTPDFKILGKRLKNSNIKISVVTFSDKELIPSENRPRYISGDRMVEAALKKSKCDFKIKKVYAYYPKFWQEPSDYRP-- 152 (219)
T ss_pred cCCHHHHHHHHHHHHCCCeEEEEEccchhhccccCCcceechHHHHHHHHHhcCccceeeeeeeeCCcccCChhhhhh--
Confidence 47899999999999999999999966553 4677777433 322233322211 111111111
Q ss_pred CCCCCcCCCCHHHHHHHHHHHcCC--ceEEEEeCCccchhhhcc
Q 029504 150 ANEPTSRSGGKAAAVQQIRKAHAY--KVLAMIGDGATDLEVSIF 191 (192)
Q Consensus 150 ~~~~~~~~~~K~~~l~~~~~~~g~--~~~~~iGDs~~Di~~a~~ 191 (192)
.+-..|.+..|..-++.+++++|+ ++|++|=|+..-++.|+.
T Consensus 153 ~gl~KPdp~iK~yHle~ll~~~gl~peE~LFIDD~~~NVeaA~~ 196 (219)
T PTZ00445 153 LGLDAPMPLDKSYHLKQVCSDFNVNPDEILFIDDDMNNCKNALK 196 (219)
T ss_pred hcccCCCccchHHHHHHHHHHcCCCHHHeEeecCCHHHHHHHHH
Confidence 122244555677788999999998 999999999988887763
No 172
>KOG3128 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.06 E-value=2.3e-06 Score=64.74 Aligned_cols=114 Identities=20% Similarity=0.363 Sum_probs=76.5
Q ss_pred HHHHHHHHHhCCCCCChhHHHHHHHHHHCCCcEEEEcCCcHHhHHHHHHH-cCCCC-CcEEecceeEecCCeeeeccCCC
Q 029504 75 LSQVQDFLEKRPPRLSPGIDELVKKLKANNKNVYLISGGFRHMINPIASV-LGIPP-ENIFANQLLFKSSGEFLGFDANE 152 (192)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~e~l~~l~~~g~~~~IvS~~~~~~~~~~l~~-~g~~~-~~~~~~~~~~~~~g~~~~~~~~~ 152 (192)
...+.+++++....+++|..++...|+++++|+.|.|++....++.+.++ .++.+ ..++++.+.++.+|.+.++..
T Consensus 125 k~~I~~~Va~s~i~lReg~~~ff~~L~~~~IP~~iFSAGigdiiEev~~q~~~~~pn~k~vSN~~~F~edg~l~gF~~-- 202 (298)
T KOG3128|consen 125 KNAIDDIVAESNIALREGYEEFFEALQAHEIPLLIFSAGIGDIIEEVTRQKLVLHPNVKFVSNYMDFDEDGNLCGFSQ-- 202 (298)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHhCCCceEEEecchHHHHHHHHHHHhccCccHHhhhhhhhhcccchhhhhhH--
Confidence 45678888886678999999999999999999999999999999888875 33332 345566666665565443211
Q ss_pred CCcCCCCHH-HHHHHHHHHcC----CceEEEEeCCccchhhhc
Q 029504 153 PTSRSGGKA-AAVQQIRKAHA----YKVLAMIGDGATDLEVSI 190 (192)
Q Consensus 153 ~~~~~~~K~-~~l~~~~~~~g----~~~~~~iGDs~~Di~~a~ 190 (192)
+..+.-+|- ..++...+.+. -.+++.-|||..|+.|+.
T Consensus 203 ~Lihtfnkn~~v~~~~s~yf~~~~~~~nVillGdsigdl~ma~ 245 (298)
T KOG3128|consen 203 PLIHTFNKNSSVLQNESEYFHQLAGRVNVILLGDSIGDLHMAD 245 (298)
T ss_pred HHHHHHccchHHHHhhhHHHhhccCCceEEEeccccccchhhc
Confidence 111111121 12222222222 278999999999999974
No 173
>PLN02580 trehalose-phosphatase
Probab=98.05 E-value=3.1e-05 Score=63.02 Aligned_cols=38 Identities=21% Similarity=0.113 Sum_probs=31.5
Q ss_pred Cc-CCCCHHHHHHHHHHHcCC--c-e--EEEEeCCccchhhhcc
Q 029504 154 TS-RSGGKAAAVQQIRKAHAY--K-V--LAMIGDGATDLEVSIF 191 (192)
Q Consensus 154 ~~-~~~~K~~~l~~~~~~~g~--~-~--~~~iGDs~~Di~~a~~ 191 (192)
.+ .+.+|+.+++.+++.+|+ . . .++|||..||..|.+.
T Consensus 295 rP~~g~~KG~Av~~Ll~~~g~~~~d~~~pi~iGDD~TDedmF~~ 338 (384)
T PLN02580 295 RPVIDWNKGKAVEFLLESLGLSNCDDVLPIYIGDDRTDEDAFKV 338 (384)
T ss_pred ecCCCCCHHHHHHHHHHhcCCCcccceeEEEECCCchHHHHHHh
Confidence 45 357999999999999987 2 3 3899999999999874
No 174
>COG3769 Predicted hydrolase (HAD superfamily) [General function prediction only]
Probab=98.04 E-value=2.3e-05 Score=58.34 Aligned_cols=33 Identities=21% Similarity=0.282 Sum_probs=24.1
Q ss_pred CCHHHHHHHHHHHc---C-CceEEEEeCCccchhhhc
Q 029504 158 GGKAAAVQQIRKAH---A-YKVLAMIGDGATDLEVSI 190 (192)
Q Consensus 158 ~~K~~~l~~~~~~~---g-~~~~~~iGDs~~Di~~a~ 190 (192)
.+|+.+..-+++.| + .+.++.+|||+||++|.+
T Consensus 190 ~gKg~Aa~~ll~~y~rl~~~r~t~~~GDg~nD~Pl~e 226 (274)
T COG3769 190 AGKGQAANWLLETYRRLGGARTTLGLGDGPNDAPLLE 226 (274)
T ss_pred cCccHHHHHHHHHHHhcCceeEEEecCCCCCcccHHH
Confidence 35777766665544 3 255999999999999874
No 175
>TIGR01452 PGP_euk phosphoglycolate/pyridoxal phosphate phosphatase family. This model is closely related to a family of bacterial sequences including the E. coli NagD and B. subtilus AraL genes which are characterized by the ability to hydrolyze para-nitrophenylphosphate (pNPPases or NPPases). The chlamydomonas PGPase does not catalyze this reaction and so presumably these two groups have different functions and substrate specificities. Many of the genes in this alignment have been annotated as pNPPases due to this association.
Probab=97.99 E-value=5e-05 Score=59.63 Aligned_cols=40 Identities=20% Similarity=0.312 Sum_probs=31.5
Q ss_pred CChhHHHHHHHHHHCCCcEEEEcCCcHH---hHHHHHHHcCCC
Q 029504 89 LSPGIDELVKKLKANNKNVYLISGGFRH---MINPIASVLGIP 128 (192)
Q Consensus 89 ~~~~~~e~l~~l~~~g~~~~IvS~~~~~---~~~~~l~~~g~~ 128 (192)
+.||+.++|+.|+++|++++++||+... .....++.+|+.
T Consensus 19 ~~~ga~e~l~~L~~~g~~~~~~Tnns~~~~~~~~~~l~~~G~~ 61 (279)
T TIGR01452 19 VVPGAPELLDRLARAGKAALFVTNNSTKSRAEYALKFARLGFN 61 (279)
T ss_pred eCcCHHHHHHHHHHCCCeEEEEeCCCCCCHHHHHHHHHHcCCC
Confidence 6688999999999999999999986533 233455678875
No 176
>TIGR02251 HIF-SF_euk Dullard-like phosphatase domain. This domain is related to domains found in FCP1-like phosphatases (TIGR02250), and together both are detected by the Pfam model pfam03031.
Probab=97.96 E-value=1.9e-05 Score=57.09 Aligned_cols=87 Identities=13% Similarity=0.214 Sum_probs=59.5
Q ss_pred CCCChhHHHHHHHHHHCCCcEEEEcCCcHHhHHHHHHHcCCCCCcEEecceeEecCCeeeeccCCCCCcCCCCHHHHHHH
Q 029504 87 PRLSPGIDELVKKLKANNKNVYLISGGFRHMINPIASVLGIPPENIFANQLLFKSSGEFLGFDANEPTSRSGGKAAAVQQ 166 (192)
Q Consensus 87 ~~~~~~~~e~l~~l~~~g~~~~IvS~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~K~~~l~~ 166 (192)
...+||+.++|+.|.+. +.++|.|++.+.+++.+++.++... ..|...+.- ++..... ++ +.+
T Consensus 41 v~~RPgl~eFL~~l~~~-yei~I~Ts~~~~yA~~il~~ldp~~-~~f~~~l~r-~~~~~~~-----------~~---~~K 103 (162)
T TIGR02251 41 VFKRPHVDEFLERVSKW-YELVIFTASLEEYADPVLDILDRGG-KVISRRLYR-ESCVFTN-----------GK---YVK 103 (162)
T ss_pred EEECCCHHHHHHHHHhc-CEEEEEcCCcHHHHHHHHHHHCcCC-CEEeEEEEc-cccEEeC-----------CC---EEe
Confidence 35789999999999988 9999999999999999999998762 255543321 1111100 11 111
Q ss_pred HHHHcCC--ceEEEEeCCccchhhhc
Q 029504 167 IRKAHAY--KVLAMIGDGATDLEVSI 190 (192)
Q Consensus 167 ~~~~~g~--~~~~~iGDs~~Di~~a~ 190 (192)
-++..|. ++|++|||+..|..+..
T Consensus 104 ~L~~l~~~~~~vIiVDD~~~~~~~~~ 129 (162)
T TIGR02251 104 DLSLVGKDLSKVIIIDNSPYSYSLQP 129 (162)
T ss_pred EchhcCCChhhEEEEeCChhhhccCc
Confidence 1222343 78999999999887654
No 177
>PLN03190 aminophospholipid translocase; Provisional
Probab=97.96 E-value=1.8e-05 Score=73.11 Aligned_cols=42 Identities=17% Similarity=0.334 Sum_probs=38.5
Q ss_pred CCCChhHHHHHHHHHHCCCcEEEEcCCcHHhHHHHHHHcCCC
Q 029504 87 PRLSPGIDELVKKLKANNKNVYLISGGFRHMINPIASVLGIP 128 (192)
Q Consensus 87 ~~~~~~~~e~l~~l~~~g~~~~IvS~~~~~~~~~~l~~~g~~ 128 (192)
.++++|+.+.++.|++.|++++++||+....+..++..+++-
T Consensus 725 D~lr~~v~~~I~~l~~agi~v~mlTGD~~~tAi~IA~s~~Ll 766 (1178)
T PLN03190 725 DKLQQGVPEAIESLRTAGIKVWVLTGDKQETAISIGYSSKLL 766 (1178)
T ss_pred cCCchhHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHHhCCC
Confidence 369999999999999999999999999999999998877764
No 178
>COG2216 KdpB High-affinity K+ transport system, ATPase chain B [Inorganic ion transport and metabolism]
Probab=97.89 E-value=3.9e-05 Score=63.76 Aligned_cols=81 Identities=25% Similarity=0.367 Sum_probs=67.6
Q ss_pred CCChhHHHHHHHHHHCCCcEEEEcCCcHHhHHHHHHHcCCCCCcEEecceeEecCCeeeeccCCCCCcCCCCHHHHHHHH
Q 029504 88 RLSPGIDELVKKLKANNKNVYLISGGFRHMINPIASVLGIPPENIFANQLLFKSSGEFLGFDANEPTSRSGGKAAAVQQI 167 (192)
Q Consensus 88 ~~~~~~~e~l~~l~~~g~~~~IvS~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~K~~~l~~~ 167 (192)
.+.||++|-+..+|+.|++.+++|+++.-++..+....|.+ ++.+.. .|++|.+.+++-
T Consensus 447 ivK~Gi~ERf~elR~MgIkTvM~TGDN~~TAa~IA~EAGVD--dfiAea-------------------tPEdK~~~I~~e 505 (681)
T COG2216 447 IVKPGIKERFAELRKMGIKTVMITGDNPLTAAAIAAEAGVD--DFIAEA-------------------TPEDKLALIRQE 505 (681)
T ss_pred hcchhHHHHHHHHHhcCCeEEEEeCCCHHHHHHHHHHhCch--hhhhcC-------------------ChHHHHHHHHHH
Confidence 46899999999999999999999999999999999999998 444421 135788888887
Q ss_pred HHHcCCceEEEEeCCccchhhhcc
Q 029504 168 RKAHAYKVLAMIGDGATDLEVSIF 191 (192)
Q Consensus 168 ~~~~g~~~~~~iGDs~~Di~~a~~ 191 (192)
+.+ | +-+.+.|||-||.+++..
T Consensus 506 Q~~-g-rlVAMtGDGTNDAPALAq 527 (681)
T COG2216 506 QAE-G-RLVAMTGDGTNDAPALAQ 527 (681)
T ss_pred Hhc-C-cEEEEcCCCCCcchhhhh
Confidence 765 3 478999999999998753
No 179
>TIGR01689 EcbF-BcbF capsule biosynthesis phosphatase. Due to the likelihood that the substrates of these enzymes are different depending on the nature of the particular polysaccharides associated with each species, this model has been classified as a subfamily despite the close homology.
Probab=97.83 E-value=7.2e-05 Score=51.56 Aligned_cols=42 Identities=14% Similarity=0.037 Sum_probs=34.3
Q ss_pred CCChhHHHHHHHHHHCCCcEEEEcCCcHH---------------hHHHHHHHcCCCC
Q 029504 88 RLSPGIDELVKKLKANNKNVYLISGGFRH---------------MINPIASVLGIPP 129 (192)
Q Consensus 88 ~~~~~~~e~l~~l~~~g~~~~IvS~~~~~---------------~~~~~l~~~g~~~ 129 (192)
.+.+++.+.++.++++|+.++++|+.... .+...+...+++-
T Consensus 24 ~~~~~~ie~L~~l~~~G~~IiiaTGR~~~~~~~n~~~i~~~~~~~t~~wL~k~~ipY 80 (126)
T TIGR01689 24 APILAVIEKLRHYKALGFEIVISSSRNMRTYEGNVGKINIHTLPIIILWLNQHNVPY 80 (126)
T ss_pred ccCHHHHHHHHHHHHCCCEEEEECCCCchhhhccccccchhhHHHHHHHHHHcCCCC
Confidence 47899999999999999999999999765 3456666777773
No 180
>PF11019 DUF2608: Protein of unknown function (DUF2608); InterPro: IPR022565 This family is conserved in Bacteria. The function is not known.
Probab=97.74 E-value=0.0013 Score=50.94 Aligned_cols=101 Identities=14% Similarity=0.155 Sum_probs=65.4
Q ss_pred CCChhHHHHHHHHHHCCCcEEEEcCCcHHhHHHH---HHHcCCCCCcE-EecceeEecCCeeeeccCCCC-------CcC
Q 029504 88 RLSPGIDELVKKLKANNKNVYLISGGFRHMINPI---ASVLGIPPENI-FANQLLFKSSGEFLGFDANEP-------TSR 156 (192)
Q Consensus 88 ~~~~~~~e~l~~l~~~g~~~~IvS~~~~~~~~~~---l~~~g~~~~~~-~~~~~~~~~~g~~~~~~~~~~-------~~~ 156 (192)
.+.+.+.++++.++++|+++..+|+.+..+.... |+.+|++.+.. +.....+.. -.+.......+ ...
T Consensus 81 lie~~~~~~i~~lq~~~~~v~alT~~~~~~~~~t~~~Lk~~gi~fs~~~~~~~~~~~~-~~~~~~~~~~~~~~~GIlft~ 159 (252)
T PF11019_consen 81 LIESDVPNIINSLQNKGIPVIALTARGPNMEDWTLRELKSLGIDFSSSSFPEDGIISF-PVFDSALSRAPSFYDGILFTG 159 (252)
T ss_pred EcchhHHHHHHHHHHCCCcEEEEcCCChhhHHHHHHHHHHCCCCccccccccCcceec-ccccCCCCCCceeecCeEEeC
Confidence 4779999999999999999999998876655443 44578875332 111111100 00000001111 112
Q ss_pred CCCHHHHHHHHHHHcCC--ceEEEEeCCccchhhh
Q 029504 157 SGGKAAAVQQIRKAHAY--KVLAMIGDGATDLEVS 189 (192)
Q Consensus 157 ~~~K~~~l~~~~~~~g~--~~~~~iGDs~~Di~~a 189 (192)
+.+|+.++..++.+.|. +.+++|-|+.--+...
T Consensus 160 ~~~KG~~L~~fL~~~~~~pk~IIfIDD~~~nl~sv 194 (252)
T PF11019_consen 160 GQDKGEVLKYFLDKINQSPKKIIFIDDNKENLKSV 194 (252)
T ss_pred CCccHHHHHHHHHHcCCCCCeEEEEeCCHHHHHHH
Confidence 35899999999999885 8999999998665543
No 181
>TIGR01459 HAD-SF-IIA-hyp4 HAD-superfamily class IIA hydrolase, TIGR01459. This hypothetical equivalog is a member of the Class IIA subfamily of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. The sequences modelled by this equivalog are all gram negative and primarily alpha proteobacteria. Only one sequence hase been annotated as other than "hypothetical." That one, from Brucella, is annotated as related to NagD, but only by sequence similarity and should be treated with some skepticism. (See comments for Class IIA subfamily)
Probab=97.74 E-value=1.1e-05 Score=61.98 Aligned_cols=89 Identities=16% Similarity=0.043 Sum_probs=58.8
Q ss_pred ChhHHHHHHHHHHCCCcEEEEcCCcHHhHHHHHHHcCCCCCcEEecceeEecCCeeeeccCCCCCcCCCCHHHHHHHHHH
Q 029504 90 SPGIDELVKKLKANNKNVYLISGGFRHMINPIASVLGIPPENIFANQLLFKSSGEFLGFDANEPTSRSGGKAAAVQQIRK 169 (192)
Q Consensus 90 ~~~~~e~l~~l~~~g~~~~IvS~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~K~~~l~~~~~ 169 (192)
++++.++++.++++|+++ |+||.+..+....+..++.. .++...... .+. +...+..+...+....+
T Consensus 140 ~~~~~~~l~~l~~~g~~~-i~tN~d~~~~~~~~~~~~~g--~~~~~i~~~--g~~--------~~~~gKP~~~~~~~~~~ 206 (242)
T TIGR01459 140 LDEFDELFAPIVARKIPN-ICANPDRGINQHGIYRYGAG--YYAELIKQL--GGK--------VIYSGKPYPAIFHKALK 206 (242)
T ss_pred HHHHHHHHHHHHhCCCcE-EEECCCEeccCCCceEeccc--HHHHHHHHh--CCc--------EecCCCCCHHHHHHHHH
Confidence 688999999998899997 88998887776555555544 333211001 010 10011124577788888
Q ss_pred HcCC---ceEEEEeCC-ccchhhhcc
Q 029504 170 AHAY---KVLAMIGDG-ATDLEVSIF 191 (192)
Q Consensus 170 ~~g~---~~~~~iGDs-~~Di~~a~~ 191 (192)
++|. ++|++|||+ .+|+.+|+.
T Consensus 207 ~~~~~~~~~~~~vGD~~~~Di~~a~~ 232 (242)
T TIGR01459 207 ECSNIPKNRMLMVGDSFYTDILGANR 232 (242)
T ss_pred HcCCCCcccEEEECCCcHHHHHHHHH
Confidence 8874 589999999 599999864
No 182
>PF08235 LNS2: LNS2 (Lipin/Ned1/Smp2); InterPro: IPR013209 This domain is found in Saccharomyces cerevisiae (Baker's yeast) protein SMP2, proteins with an N-terminal lipin domain (IPR007651 from INTERPRO) and phosphatidylinositol transfer proteins []. SMP2 is involved in plasmid maintenance and respiration []. Lipin proteins are involved in adipose tissue development and insulin resistance [].
Probab=97.72 E-value=0.00039 Score=49.63 Aligned_cols=96 Identities=17% Similarity=0.199 Sum_probs=61.7
Q ss_pred CCChhHHHHHHHHHHCCCcEEEEcCCcHH---hHHHHHHHc-----CCCCCcEEecc-eeEecCCeeeeccCCCCCcCCC
Q 029504 88 RLSPGIDELVKKLKANNKNVYLISGGFRH---MINPIASVL-----GIPPENIFANQ-LLFKSSGEFLGFDANEPTSRSG 158 (192)
Q Consensus 88 ~~~~~~~e~l~~l~~~g~~~~IvS~~~~~---~~~~~l~~~-----g~~~~~~~~~~-~~~~~~g~~~~~~~~~~~~~~~ 158 (192)
..++|+.++.+.++++|+++.-+|+.+.. ..+..+... +++...++-+. -.+ +.+..... ...+. .
T Consensus 27 ~~h~g~~~l~~~i~~~GY~ilYlTaRp~~qa~~Tr~~L~~~~q~~~~lP~Gpv~~sP~~l~---~al~rEvi-~~~p~-~ 101 (157)
T PF08235_consen 27 WTHPGAAELYRKIADNGYKILYLTARPIGQANRTRSWLAQHQQQGHNLPDGPVLLSPDSLF---SALHREVI-SKDPE-E 101 (157)
T ss_pred hhhhcHHHHHHHHHHCCeEEEEECcCcHHHHHHHHHHHHHHHhCCccCCCCCEEECCcchh---hhhhcccc-ccChH-H
Confidence 36799999999999999999999999744 345566655 66643333321 000 11111111 11121 3
Q ss_pred CHHHHHHHHHHHcC---CceEEEEeCCccchhh
Q 029504 159 GKAAAVQQIRKAHA---YKVLAMIGDGATDLEV 188 (192)
Q Consensus 159 ~K~~~l~~~~~~~g---~~~~~~iGDs~~Di~~ 188 (192)
-|...++.+...+. ..-..++|+..+|+.+
T Consensus 102 fK~~~L~~l~~~f~~~~~pf~agfGN~~tDv~a 134 (157)
T PF08235_consen 102 FKIACLRDLRALFPPDGNPFYAGFGNRSTDVIA 134 (157)
T ss_pred HHHHHHHHHHHhcCCCCCeEEEecCCcHHHHHH
Confidence 68888998887633 3567889999999865
No 183
>KOG0204 consensus Calcium transporting ATPase [Inorganic ion transport and metabolism]
Probab=97.71 E-value=0.0002 Score=62.78 Aligned_cols=101 Identities=23% Similarity=0.243 Sum_probs=71.7
Q ss_pred CCCChhHHHHHHHHHHCCCcEEEEcCCcHHhHHHHHHHcCCCCCcEEecceeEecCCee---ee----ccCCC----CCc
Q 029504 87 PRLSPGIDELVKKLKANNKNVYLISGGFRHMINPIASVLGIPPENIFANQLLFKSSGEF---LG----FDANE----PTS 155 (192)
Q Consensus 87 ~~~~~~~~e~l~~l~~~g~~~~IvS~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~g~~---~~----~~~~~----~~~ 155 (192)
.+.+||+++.++.|++.|+.+-+||++.-.++++++..+||-.+.. ....+. ..+| +. +.+++ ...
T Consensus 646 DPvRPgV~~AV~~Cq~AGItVRMVTGDNI~TAkAIA~eCGILt~~~--d~~~lE-G~eFr~~s~ee~~~i~pkl~VlARS 722 (1034)
T KOG0204|consen 646 DPVRPGVPEAVQLCQRAGITVRMVTGDNINTAKAIARECGILTPGG--DFLALE-GKEFRELSQEERDKIWPKLRVLARS 722 (1034)
T ss_pred CCCCCCcHHHHHHHHHcCcEEEEEeCCcHHHHHHHHHHcccccCCC--ccceec-chhhhhcCHHHHHhhhhhheeeecC
Confidence 4689999999999999999999999999999999999999863211 111111 0000 00 00000 134
Q ss_pred CCCCHHHHHHHHHHHcCCceEEEEeCCccchhhhccC
Q 029504 156 RSGGKAAAVQQIRKAHAYKVLAMIGDGATDLEVSIFI 192 (192)
Q Consensus 156 ~~~~K~~~l~~~~~~~g~~~~~~iGDs~~Di~~a~~~ 192 (192)
.|.+|...++.+.++ | +-+.+-|||.||-++++.+
T Consensus 723 SP~DK~lLVk~L~~~-g-~VVAVTGDGTNDaPALkeA 757 (1034)
T KOG0204|consen 723 SPNDKHLLVKGLIKQ-G-EVVAVTGDGTNDAPALKEA 757 (1034)
T ss_pred CCchHHHHHHHHHhc-C-cEEEEecCCCCCchhhhhc
Confidence 567899999998864 4 4677789999999998753
No 184
>TIGR01458 HAD-SF-IIA-hyp3 HAD-superfamily subfamily IIA hydrolase, TIGR01458. This hypothetical equivalog is a member of the IIA subfamily (TIGR01460) of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. One sequence (GP|10716807) has been annotated as a "phospholysine phosphohistidine inorganic pyrophosphatase," probably in reference to studies on similarly described (but unsequenced) enzymes from bovine and rat tissues. However, the supporting information for this annotation has never been published.
Probab=97.65 E-value=1.5e-05 Score=61.93 Aligned_cols=92 Identities=13% Similarity=0.048 Sum_probs=59.7
Q ss_pred CChhHHHHHHHHHHCCCcEEEEcCCcHHhHHHHHHHcCCCCCcEEecceeEecCCeeeeccCCCCCcCCCCHHHHHHHHH
Q 029504 89 LSPGIDELVKKLKANNKNVYLISGGFRHMINPIASVLGIPPENIFANQLLFKSSGEFLGFDANEPTSRSGGKAAAVQQIR 168 (192)
Q Consensus 89 ~~~~~~e~l~~l~~~g~~~~IvS~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~K~~~l~~~~ 168 (192)
.++++.+.++.+++.+.+++|+|+....+.......+|+. .++....... + .++...+..+...+..++
T Consensus 121 ~y~~l~~a~~~L~~~~~~~~iatn~~~~~~~~~~~~~g~g--~~~~~i~~~~--~-------~~~~~~gKP~p~~~~~~~ 189 (257)
T TIGR01458 121 SYQILNQAFRLLLDGAKPLLIAIGKGRYYKRKDGLALDVG--PFVTALEYAT--D-------TKATVVGKPSKTFFLEAL 189 (257)
T ss_pred CHHHHHHHHHHHHcCCCCEEEEeCCCCCCcCCCCCCCCch--HHHHHHHHHh--C-------CCceeecCCCHHHHHHHH
Confidence 4678888899998888999999988776655444444443 3332111100 0 011111112457788888
Q ss_pred HHcCC--ceEEEEeCCc-cchhhhcc
Q 029504 169 KAHAY--KVLAMIGDGA-TDLEVSIF 191 (192)
Q Consensus 169 ~~~g~--~~~~~iGDs~-~Di~~a~~ 191 (192)
+++|. +++++|||+. +|+.+|+.
T Consensus 190 ~~~~~~~~~~~~vGD~~~~Di~~a~~ 215 (257)
T TIGR01458 190 RATGCEPEEAVMIGDDCRDDVGGAQD 215 (257)
T ss_pred HHhCCChhhEEEECCCcHHHHHHHHH
Confidence 88886 8999999996 99998864
No 185
>TIGR01458 HAD-SF-IIA-hyp3 HAD-superfamily subfamily IIA hydrolase, TIGR01458. This hypothetical equivalog is a member of the IIA subfamily (TIGR01460) of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. One sequence (GP|10716807) has been annotated as a "phospholysine phosphohistidine inorganic pyrophosphatase," probably in reference to studies on similarly described (but unsequenced) enzymes from bovine and rat tissues. However, the supporting information for this annotation has never been published.
Probab=97.53 E-value=0.00017 Score=56.06 Aligned_cols=41 Identities=22% Similarity=0.318 Sum_probs=33.7
Q ss_pred CChhHHHHHHHHHHCCCcEEEEcCCcHHh---HHHHHHHcCCCC
Q 029504 89 LSPGIDELVKKLKANNKNVYLISGGFRHM---INPIASVLGIPP 129 (192)
Q Consensus 89 ~~~~~~e~l~~l~~~g~~~~IvS~~~~~~---~~~~l~~~g~~~ 129 (192)
+.|++.++++.|+++|++++++||+.... +...++.+|++.
T Consensus 22 ~~~~a~~al~~l~~~G~~~~~~Tn~~~~~~~~~~~~l~~~g~~~ 65 (257)
T TIGR01458 22 AVPGSQEAVKRLRGASVKVRFVTNTTKESKQDLLERLQRLGFDI 65 (257)
T ss_pred cCCCHHHHHHHHHHCCCeEEEEECCCCCCHHHHHHHHHHcCCCC
Confidence 67899999999999999999999876553 556667778763
No 186
>TIGR01452 PGP_euk phosphoglycolate/pyridoxal phosphate phosphatase family. This model is closely related to a family of bacterial sequences including the E. coli NagD and B. subtilus AraL genes which are characterized by the ability to hydrolyze para-nitrophenylphosphate (pNPPases or NPPases). The chlamydomonas PGPase does not catalyze this reaction and so presumably these two groups have different functions and substrate specificities. Many of the genes in this alignment have been annotated as pNPPases due to this association.
Probab=97.52 E-value=2.7e-05 Score=61.19 Aligned_cols=91 Identities=12% Similarity=0.064 Sum_probs=54.4
Q ss_pred CChhHHHHHHHHHHCCCcEEEEcCCcHHhH-HHHHHHcCCCCCcEEecceeEecCCeeeeccCCCCCcCCCCHHHHHHHH
Q 029504 89 LSPGIDELVKKLKANNKNVYLISGGFRHMI-NPIASVLGIPPENIFANQLLFKSSGEFLGFDANEPTSRSGGKAAAVQQI 167 (192)
Q Consensus 89 ~~~~~~e~l~~l~~~g~~~~IvS~~~~~~~-~~~l~~~g~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~K~~~l~~~ 167 (192)
.++++.++++.++++|. ++|+|+.+..+. ...+...+.. .++....... .+ .+...+......+..+
T Consensus 144 ~y~~i~~~l~~L~~~g~-~~i~Tn~d~~~~~~~~~~~~~~g--~~~~~i~~~~-g~--------~~~~~gKP~p~~~~~~ 211 (279)
T TIGR01452 144 SYAKLREACAHLREPGC-LFVATNRDPWHPLSDGSRTPGTG--SLVAAIETAS-GR--------QPLVVGKPSPYMFECI 211 (279)
T ss_pred CHHHHHHHHHHHhcCCC-EEEEeCCCCCCCCcCCCcccChH--HHHHHHHHHh-CC--------ceeccCCCCHHHHHHH
Confidence 57899999999999887 788988876432 1111122222 2221111000 00 0110111234677888
Q ss_pred HHHcCC--ceEEEEeCCc-cchhhhcc
Q 029504 168 RKAHAY--KVLAMIGDGA-TDLEVSIF 191 (192)
Q Consensus 168 ~~~~g~--~~~~~iGDs~-~Di~~a~~ 191 (192)
++++|+ ++|+||||+. +|+.+|+.
T Consensus 212 ~~~~~~~~~~~lmIGD~~~tDI~~A~~ 238 (279)
T TIGR01452 212 TENFSIDPARTLMVGDRLETDILFGHR 238 (279)
T ss_pred HHHhCCChhhEEEECCChHHHHHHHHH
Confidence 888886 8999999995 99999864
No 187
>KOG0210 consensus P-type ATPase [Inorganic ion transport and metabolism]
Probab=97.49 E-value=0.0002 Score=61.60 Aligned_cols=102 Identities=18% Similarity=0.217 Sum_probs=67.9
Q ss_pred CCCChhHHHHHHHHHHCCCcEEEEcCCcHHhHHHHHHHcCCCC-C---cEEec--------------------ceeEecC
Q 029504 87 PRLSPGIDELVKKLKANNKNVYLISGGFRHMINPIASVLGIPP-E---NIFAN--------------------QLLFKSS 142 (192)
Q Consensus 87 ~~~~~~~~e~l~~l~~~g~~~~IvS~~~~~~~~~~l~~~g~~~-~---~~~~~--------------------~~~~~~~ 142 (192)
.++.++++..|+-|++.|+++++.||+.-+.+.-+++.-++-. . +++.. .+.++
T Consensus 657 DkLQ~dVk~tLElLRNAgikiWMLTGDKlETA~ciAkSs~L~sR~q~ihv~~~v~sr~dah~eL~~lR~k~~~aLvi~-- 734 (1051)
T KOG0210|consen 657 DKLQDDVKPTLELLRNAGIKIWMLTGDKLETAICIAKSSRLFSRGQYIHVIRSVTSRGDAHNELNNLRRKTDCALVID-- 734 (1051)
T ss_pred HHHhhhhHhHHHHHhhcCcEEEEEcCcchhheeeeehhccceecCceEEEEEecCCchHHHHHHHHhhcCCCcEEEEc--
Confidence 3578899999999999999999999998887765555433311 0 11111 11111
Q ss_pred Cee-----------------eeccCCCCCcCCCCHHHHHHHHHHHcCCceEEEEeCCccchhhhcc
Q 029504 143 GEF-----------------LGFDANEPTSRSGGKAAAVQQIRKAHAYKVLAMIGDGATDLEVSIF 191 (192)
Q Consensus 143 g~~-----------------~~~~~~~~~~~~~~K~~~l~~~~~~~g~~~~~~iGDs~~Di~~a~~ 191 (192)
|.- .-..+-...+.|.+|+..++.+.+.-| ..+.+||||-||+.|.+.
T Consensus 735 G~Sl~~cl~yye~Ef~el~~~~~aVv~CRctPtQKA~v~~llq~~t~-krvc~IGDGGNDVsMIq~ 799 (1051)
T KOG0210|consen 735 GESLEFCLKYYEDEFIELVCELPAVVCCRCTPTQKAQVVRLLQKKTG-KRVCAIGDGGNDVSMIQA 799 (1051)
T ss_pred CchHHHHHHHHHHHHHHHHHhcCcEEEEecChhHHHHHHHHHHHhhC-ceEEEEcCCCccchheee
Confidence 100 000001113456789999999988777 599999999999999875
No 188
>COG0647 NagD Predicted sugar phosphatases of the HAD superfamily [Carbohydrate transport and metabolism]
Probab=97.47 E-value=0.00018 Score=55.92 Aligned_cols=31 Identities=29% Similarity=0.390 Sum_probs=27.0
Q ss_pred CCChhHHHHHHHHHHCCCcEEEEcCCcHHhH
Q 029504 88 RLSPGIDELVKKLKANNKNVYLISGGFRHMI 118 (192)
Q Consensus 88 ~~~~~~~e~l~~l~~~g~~~~IvS~~~~~~~ 118 (192)
.+.||+.++|+.|+++|.+++++||++...-
T Consensus 24 ~~ipga~e~l~~L~~~g~~~iflTNn~~~s~ 54 (269)
T COG0647 24 EAIPGAAEALKRLKAAGKPVIFLTNNSTRSR 54 (269)
T ss_pred ccCchHHHHHHHHHHcCCeEEEEeCCCCCCH
Confidence 4779999999999999999999999875543
No 189
>PLN03017 trehalose-phosphatase
Probab=97.42 E-value=0.0015 Score=52.90 Aligned_cols=34 Identities=21% Similarity=0.229 Sum_probs=28.8
Q ss_pred CCCHHHHHHHHHHHcCCc-----eEEEEeCCccchhhhc
Q 029504 157 SGGKAAAVQQIRKAHAYK-----VLAMIGDGATDLEVSI 190 (192)
Q Consensus 157 ~~~K~~~l~~~~~~~g~~-----~~~~iGDs~~Di~~a~ 190 (192)
..+|+.+++.+++.++.. -.+|+||-.+|-.|-+
T Consensus 281 ~~dKG~Av~~LL~~l~~~~~~~~~pvyiGDD~TDEDaF~ 319 (366)
T PLN03017 281 EWDKGKALEFLLESLGFGNTNNVFPVYIGDDRTDEDAFK 319 (366)
T ss_pred CCCHHHHHHHHHHhcccccCCCceEEEeCCCCccHHHHH
Confidence 469999999999988752 4799999999988755
No 190
>COG4229 Predicted enolase-phosphatase [Energy production and conversion]
Probab=97.41 E-value=0.0053 Score=44.66 Aligned_cols=92 Identities=15% Similarity=0.198 Sum_probs=60.1
Q ss_pred CCCCChhHHHHHHHHHHCCCcEEEEcCCcHHhHHHHHHHcCCCC-CcEEecceeEecCCeeeeccCCCCCcCCCCHHHHH
Q 029504 86 PPRLSPGIDELVKKLKANNKNVYLISGGFRHMINPIASVLGIPP-ENIFANQLLFKSSGEFLGFDANEPTSRSGGKAAAV 164 (192)
Q Consensus 86 ~~~~~~~~~e~l~~l~~~g~~~~IvS~~~~~~~~~~l~~~g~~~-~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~K~~~l 164 (192)
..+++|++.+.|+..++.|++++|-|++.-...+.+..+-.... ..+|+..+... .| +..-....
T Consensus 101 kahlypDav~~ik~wk~~g~~vyiYSSGSV~AQkL~Fghs~agdL~~lfsGyfDtt-----iG---------~KrE~~SY 166 (229)
T COG4229 101 KAHLYPDAVQAIKRWKALGMRVYIYSSGSVKAQKLFFGHSDAGDLNSLFSGYFDTT-----IG---------KKRESQSY 166 (229)
T ss_pred ccccCHhHHHHHHHHHHcCCcEEEEcCCCchhHHHhhcccccccHHhhhcceeecc-----cc---------ccccchhH
Confidence 36899999999999999999999999998776666665422110 02222221110 11 00112334
Q ss_pred HHHHHHcCC--ceEEEEeCCccchhhhcc
Q 029504 165 QQIRKAHAY--KVLAMIGDGATDLEVSIF 191 (192)
Q Consensus 165 ~~~~~~~g~--~~~~~iGDs~~Di~~a~~ 191 (192)
..++..-|+ .++++..|.++.+.+|+-
T Consensus 167 ~kIa~~iGl~p~eilFLSDn~~EL~AA~~ 195 (229)
T COG4229 167 AKIAGDIGLPPAEILFLSDNPEELKAAAG 195 (229)
T ss_pred HHHHHhcCCCchheEEecCCHHHHHHHHh
Confidence 556666676 899999999999988864
No 191
>PF06941 NT5C: 5' nucleotidase, deoxy (Pyrimidine), cytosolic type C protein (NT5C); InterPro: IPR010708 This family consists of several 5' nucleotidase, deoxy (Pyrimidine), and cytosolic type C (NT5C) proteins. 5'(3')-deoxyribonucleotidase is a ubiquitous enzyme in mammalian cells whose physiological function is not known [].; GO: 0016791 phosphatase activity; PDB: 1Z4M_A 1Q92_A 1Q91_A 1Z4J_A 1Z4I_A 1Z4Q_A 1Z4K_A 2JAW_A 1MH9_A 1Z4L_A ....
Probab=97.32 E-value=0.0008 Score=49.82 Aligned_cols=28 Identities=25% Similarity=0.345 Sum_probs=20.9
Q ss_pred CCCChhHHHHHHHHHHCCCcEEEEcCCc
Q 029504 87 PRLSPGIDELVKKLKANNKNVYLISGGF 114 (192)
Q Consensus 87 ~~~~~~~~e~l~~l~~~g~~~~IvS~~~ 114 (192)
..+.||+.|+++.|.+.|+.++++|+.+
T Consensus 72 l~p~~gA~e~l~~L~~~g~~~~~Itar~ 99 (191)
T PF06941_consen 72 LPPIPGAVEALKKLRDKGHEIVIITARP 99 (191)
T ss_dssp --B-TTHHHHHHHHHTSTTEEEEEEE-S
T ss_pred CCccHHHHHHHHHHHHcCCcEEEEEecC
Confidence 4689999999999999997777776554
No 192
>PF02358 Trehalose_PPase: Trehalose-phosphatase; InterPro: IPR003337 Trehalose-phosphatases 3.1.3.12 from EC catalyse the de-phosphorylation of trehalose-6-phosphate to trehalose and orthophosphate. Trehalose is a common disaccharide of bacteria, fungi and invertebrates that appears to play a major role in desiccation tolerance. A pathway for trehalose biosynthesis may also exist in plants []. The trehalose-phosphatase signature is found in the C terminus of trehalose-6-phosphate synthase 2.4.1.15 from EC adjacent to the trehalose-6-phosphate synthase domain (see IPR001830 from INTERPRO). It would appear that the two equivalent genes in the Escherichia coli otsBA operon: otsA, the trehalose-6-phosphate synthase and otsB, trehalose-phosphatase (this family) have undergone gene fusion in most eukaryotes [].; GO: 0003824 catalytic activity, 0005992 trehalose biosynthetic process; PDB: 1U02_A.
Probab=97.31 E-value=0.00065 Score=51.97 Aligned_cols=38 Identities=21% Similarity=0.275 Sum_probs=27.1
Q ss_pred CcCCCCHHHHHHHHHHHcCC-----ceEEEEeCCccchhhhcc
Q 029504 154 TSRSGGKAAAVQQIRKAHAY-----KVLAMIGDGATDLEVSIF 191 (192)
Q Consensus 154 ~~~~~~K~~~l~~~~~~~g~-----~~~~~iGDs~~Di~~a~~ 191 (192)
.+....|+.+++.++++++. .-++|+||..+|-.|-++
T Consensus 160 rp~~~~KG~av~~ll~~~~~~~~~~~~~l~~GDD~tDE~~f~~ 202 (235)
T PF02358_consen 160 RPPGVNKGSAVRRLLEELPFAGPKPDFVLYIGDDRTDEDAFRA 202 (235)
T ss_dssp E-TT--HHHHHHHHHTTS---------EEEEESSHHHHHHHHT
T ss_pred EeCCCChHHHHHHHHHhcCccccccceeEEecCCCCCHHHHHH
Confidence 34445799999999998774 479999999999998765
No 193
>COG3700 AphA Acid phosphatase (class B) [General function prediction only]
Probab=97.15 E-value=0.00079 Score=48.70 Aligned_cols=85 Identities=15% Similarity=0.234 Sum_probs=53.2
Q ss_pred CCChhHHHHHHHHHHCCCcEEEEcCCcHH----hHHHHHHHcCCCCCcEEecceeEecCCeeeeccCCCCCcCCCCHHHH
Q 029504 88 RLSPGIDELVKKLKANNKNVYLISGGFRH----MINPIASVLGIPPENIFANQLLFKSSGEFLGFDANEPTSRSGGKAAA 163 (192)
Q Consensus 88 ~~~~~~~e~l~~l~~~g~~~~IvS~~~~~----~~~~~l~~~g~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~K~~~ 163 (192)
.+.+-++.+|+.++++|-.++.+|+...- ....+.+.+.+. ..... .|.| ..+.+....|...
T Consensus 114 IPKevA~qLI~MHq~RGD~i~FvTGRt~gk~d~vsk~Lak~F~i~--~m~pv--------~f~G---dk~k~~qy~Kt~~ 180 (237)
T COG3700 114 IPKEVARQLIDMHQRRGDAIYFVTGRTPGKTDTVSKTLAKNFHIT--NMNPV--------IFAG---DKPKPGQYTKTQW 180 (237)
T ss_pred chHHHHHHHHHHHHhcCCeEEEEecCCCCcccccchhHHhhcccC--CCcce--------eecc---CCCCcccccccHH
Confidence 57778899999999999999999987544 334444556554 22221 1122 1122222344333
Q ss_pred HHHHHHHcCCceEEEEeCCccchhhhcc
Q 029504 164 VQQIRKAHAYKVLAMIGDGATDLEVSIF 191 (192)
Q Consensus 164 l~~~~~~~g~~~~~~iGDs~~Di~~a~~ 191 (192)
+ +..+ --+.+|||-||+.+|+.
T Consensus 181 i----~~~~--~~IhYGDSD~Di~AAke 202 (237)
T COG3700 181 I----QDKN--IRIHYGDSDNDITAAKE 202 (237)
T ss_pred H----HhcC--ceEEecCCchhhhHHHh
Confidence 2 2333 56899999999999875
No 194
>TIGR02250 FCP1_euk FCP1-like phosphatase, phosphatase domain. This domain is related to domains found in the human NLI interacting factor-like phosphatases, and together both are detected by the Pfam model pfam03031.
Probab=97.02 E-value=0.0027 Score=45.56 Aligned_cols=48 Identities=19% Similarity=0.298 Sum_probs=40.6
Q ss_pred CCCChhHHHHHHHHHHCCCcEEEEcCCcHHhHHHHHHHcCCCCCcEEecc
Q 029504 87 PRLSPGIDELVKKLKANNKNVYLISGGFRHMINPIASVLGIPPENIFANQ 136 (192)
Q Consensus 87 ~~~~~~~~e~l~~l~~~g~~~~IvS~~~~~~~~~~l~~~g~~~~~~~~~~ 136 (192)
..++||+.++|+.+++. +.++|+|++.+.++..+++.++... .+|...
T Consensus 57 v~~rPgv~efL~~l~~~-yel~I~T~~~~~yA~~vl~~ldp~~-~~F~~r 104 (156)
T TIGR02250 57 TKLRPFLHEFLKEASKL-YEMHVYTMGTRAYAQAIAKLIDPDG-KYFGDR 104 (156)
T ss_pred EEECCCHHHHHHHHHhh-cEEEEEeCCcHHHHHHHHHHhCcCC-CeeccE
Confidence 45899999999999955 9999999999999999999998762 356443
No 195
>COG1877 OtsB Trehalose-6-phosphatase [Carbohydrate transport and metabolism]
Probab=96.91 E-value=0.0086 Score=46.62 Aligned_cols=40 Identities=23% Similarity=0.246 Sum_probs=30.7
Q ss_pred CCChhHHHHHHHHHHCC-CcEEEEcCCcHHhHHHHHHHcCC
Q 029504 88 RLSPGIDELVKKLKANN-KNVYLISGGFRHMINPIASVLGI 127 (192)
Q Consensus 88 ~~~~~~~e~l~~l~~~g-~~~~IvS~~~~~~~~~~l~~~g~ 127 (192)
.+.+++.++|+.|.+.. ..++|+|+.....++..+...++
T Consensus 40 ~~~~~l~~lL~~Las~~~~~v~iiSGR~~~~l~~~~~v~~i 80 (266)
T COG1877 40 VPDDRLLSLLQDLASDPRNVVAIISGRSLAELERLFGVPGI 80 (266)
T ss_pred CCCHHHHHHHHHHHhcCCCeEEEEeCCCHHHHHHhcCCCCc
Confidence 47788888998888874 35888888888887777765554
No 196
>PF03031 NIF: NLI interacting factor-like phosphatase; InterPro: IPR004274 The function of this domain is unclear. It is found in proteins of diverse function including phosphatases some of which may be active in active in ternary elongation complexes and a number of NLI interacting factors. In the phospatases this domain is often present N-terminal to the BRCT domain (IPR001357 from INTERPRO).; GO: 0005515 protein binding; PDB: 3L0Y_A 2GHQ_A 3PGL_A 3L0C_B 1TA0_A 2GHT_A 3L0B_B 1T9Z_A 3QLE_A 2Q5E_E ....
Probab=96.73 E-value=0.00073 Score=48.38 Aligned_cols=48 Identities=21% Similarity=0.468 Sum_probs=35.9
Q ss_pred CCCChhHHHHHHHHHHCCCcEEEEcCCcHHhHHHHHHHcCCCCCcEEecc
Q 029504 87 PRLSPGIDELVKKLKANNKNVYLISGGFRHMINPIASVLGIPPENIFANQ 136 (192)
Q Consensus 87 ~~~~~~~~e~l~~l~~~g~~~~IvS~~~~~~~~~~l~~~g~~~~~~~~~~ 136 (192)
..++||+.+||+++. ..+.++|.|++...+++.+++.+.-.. ..|...
T Consensus 35 v~~RP~l~~FL~~l~-~~~ev~i~T~~~~~ya~~v~~~ldp~~-~~~~~~ 82 (159)
T PF03031_consen 35 VKLRPGLDEFLEELS-KHYEVVIWTSASEEYAEPVLDALDPNG-KLFSRR 82 (159)
T ss_dssp EEE-TTHHHHHHHHH-HHCEEEEE-SS-HHHHHHHHHHHTTTT-SSEEEE
T ss_pred EeeCchHHHHHHHHH-HhceEEEEEeehhhhhhHHHHhhhhhc-cccccc
Confidence 357899999999995 459999999999999999999887531 445433
No 197
>TIGR02245 HAD_IIID1 HAD-superfamily subfamily IIID hydrolase, TIGR02245. This family of sequences appears to belong to the Haloacid Dehalogenase (HAD) superfamily of enzymes by virtue of the presence of three catalytic domains, in this case: LLVLD(ILV)D(YH)T, I(VMG)IWS, and (DN)(VC)K(PA)Lx{15-17}T(IL)(MH)(FV)DD(IL)(GRS)(RK)N. Since this family has no large "cap" domain between motifs 1 and 2 or between 2 and 3, it is formally a "class III" HAD.
Probab=96.66 E-value=0.0025 Score=47.35 Aligned_cols=40 Identities=15% Similarity=0.202 Sum_probs=36.4
Q ss_pred CCChhHHHHHHHHHHCCCcEEEEcCCcHHhHHHHHHHcCCC
Q 029504 88 RLSPGIDELVKKLKANNKNVYLISGGFRHMINPIASVLGIP 128 (192)
Q Consensus 88 ~~~~~~~e~l~~l~~~g~~~~IvS~~~~~~~~~~l~~~g~~ 128 (192)
..+|++.+||+.+.+ .+.++|-|++...+++.+++.++..
T Consensus 45 ~kRP~l~eFL~~~~~-~feIvVwTAa~~~ya~~~l~~l~~~ 84 (195)
T TIGR02245 45 LMRPYLHEFLTSAYE-DYDIVIWSATSMKWIEIKMTELGVL 84 (195)
T ss_pred EeCCCHHHHHHHHHh-CCEEEEEecCCHHHHHHHHHHhccc
Confidence 477999999999998 7999999999999999999998764
No 198
>PF05152 DUF705: Protein of unknown function (DUF705); InterPro: IPR007827 This family contains uncharacterised baculoviral proteins.
Probab=96.44 E-value=0.0096 Score=46.35 Aligned_cols=47 Identities=19% Similarity=0.228 Sum_probs=42.0
Q ss_pred CChhHHHHHHHHHHCCCcEEEEcCCcHHhHHHHHHHcCCCCCcEEecce
Q 029504 89 LSPGIDELVKKLKANNKNVYLISGGFRHMINPIASVLGIPPENIFANQL 137 (192)
Q Consensus 89 ~~~~~~e~l~~l~~~g~~~~IvS~~~~~~~~~~l~~~g~~~~~~~~~~~ 137 (192)
..|.+.+-|..|++.|.-+++=|.|.++++...++.+++. .+|...+
T Consensus 143 r~~~v~~sL~~Lk~~g~vLvLWSyG~~eHV~~sl~~~~L~--~~Fd~ii 189 (297)
T PF05152_consen 143 RDPAVYDSLRELKEQGCVLVLWSYGNREHVRHSLKELKLE--GYFDIII 189 (297)
T ss_pred CChHHHHHHHHHHHcCCEEEEecCCCHHHHHHHHHHhCCc--cccEEEE
Confidence 5688999999999999999999999999999999999998 7776544
No 199
>PLN03064 alpha,alpha-trehalose-phosphate synthase (UDP-forming); Provisional
Probab=96.42 E-value=0.057 Score=49.18 Aligned_cols=40 Identities=20% Similarity=0.376 Sum_probs=31.9
Q ss_pred CCCChhHHHHHHHHHHC-CCcEEEEcCCcHHhHHHHHHHcC
Q 029504 87 PRLSPGIDELVKKLKAN-NKNVYLISGGFRHMINPIASVLG 126 (192)
Q Consensus 87 ~~~~~~~~e~l~~l~~~-g~~~~IvS~~~~~~~~~~l~~~g 126 (192)
..+.|++.+.|+.|.+. +-.++|+||.....++..+...+
T Consensus 621 a~p~p~l~~~L~~L~~dp~n~VaIVSGR~~~~Le~~fg~~~ 661 (934)
T PLN03064 621 LRLHPELKEPLRALCSDPKTTIVVLSGSDRSVLDENFGEFD 661 (934)
T ss_pred cCCCHHHHHHHHHHHhCCCCeEEEEeCCCHHHHHHHhCCCC
Confidence 35778899999999886 67899999998888887776544
No 200
>KOG0209 consensus P-type ATPase [Inorganic ion transport and metabolism]
Probab=96.42 E-value=0.0068 Score=53.54 Aligned_cols=41 Identities=24% Similarity=0.372 Sum_probs=37.6
Q ss_pred CCChhHHHHHHHHHHCCCcEEEEcCCcHHhHHHHHHHcCCC
Q 029504 88 RLSPGIDELVKKLKANNKNVYLISGGFRHMINPIASVLGIP 128 (192)
Q Consensus 88 ~~~~~~~e~l~~l~~~g~~~~IvS~~~~~~~~~~l~~~g~~ 128 (192)
.+.|+.+++|+.+.+.+++++++||+..-++..+.+..|+.
T Consensus 675 PlK~Ds~~~I~el~~SSH~vvMITGDnpLTAchVak~v~iv 715 (1160)
T KOG0209|consen 675 PLKPDSKKTIKELNNSSHRVVMITGDNPLTACHVAKEVGIV 715 (1160)
T ss_pred CCCccHHHHHHHHhccCceEEEEeCCCccchheehheeeee
Confidence 47899999999999999999999999998998888888775
No 201
>PF13242 Hydrolase_like: HAD-hyrolase-like; PDB: 2P27_A 2OYC_A 2CFT_A 2P69_A 2CFS_A 2CFR_A 2HX1_D 2X4D_A 3HLT_C 3L1U_B ....
Probab=96.36 E-value=0.0037 Score=38.85 Aligned_cols=32 Identities=25% Similarity=0.311 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHcCC--ceEEEEeCC-ccchhhhcc
Q 029504 160 KAAAVQQIRKAHAY--KVLAMIGDG-ATDLEVSIF 191 (192)
Q Consensus 160 K~~~l~~~~~~~g~--~~~~~iGDs-~~Di~~a~~ 191 (192)
....+..+.+.+++ ++|++|||+ .+|+.+|+.
T Consensus 6 ~p~~~~~a~~~~~~~~~~~~~VGD~~~~Di~~a~~ 40 (75)
T PF13242_consen 6 SPGMLEQALKRLGVDPSRCVMVGDSLETDIEAAKA 40 (75)
T ss_dssp SHHHHHHHHHHHTSGGGGEEEEESSTTTHHHHHHH
T ss_pred cHHHHHHHHHHcCCCHHHEEEEcCCcHhHHHHHHH
Confidence 35778888888887 899999999 999999874
No 202
>TIGR01456 CECR5 HAD-superfamily class IIA hydrolase, TIGR01456, CECR5. The Schizosaccharomyces pombe sequence (EGAD|138276) is annotated as "phosphatidyl synthase," however this is due entirely to a C-terminal region of the protein (outside the region of similarity of this model) which is highly homologous to a family of CDP-alcohol phosphatidyltransferases. (Thus, the annotation of GP|4226073 from C. elegans as similar to phosphatidyl synthase, is a mistake as this gene does not contain the C-terminal portion). The physical connection of the phosphatidyl synthase and the HAD-superfamily hydrolase domain in S. pombe may, however, be an important clue to the substrate for the hydrolases in this equivalog.
Probab=96.34 E-value=0.0079 Score=48.28 Aligned_cols=17 Identities=29% Similarity=0.474 Sum_probs=13.6
Q ss_pred ceEEEEeCCc-cchhhhc
Q 029504 174 KVLAMIGDGA-TDLEVSI 190 (192)
Q Consensus 174 ~~~~~iGDs~-~Di~~a~ 190 (192)
++++||||+. +|+.+++
T Consensus 264 ~~~~mIGD~~~tDI~ga~ 281 (321)
T TIGR01456 264 HALYMVGDNPASDIIGAQ 281 (321)
T ss_pred heEEEEcCChhhhhhhHH
Confidence 4788888887 8888775
No 203
>TIGR01460 HAD-SF-IIA Haloacid Dehalogenase Superfamily Class (subfamily) IIA. Many of the genes in this subfamily have been annotated as "pNPPase" "4-nitrophenyl phosphatase" or "NPPase". These all refer to the same activity versus a common lab test compound used to determine phosphatase activity. There is no evidence that this activity is physiologically relevant.
Probab=96.28 E-value=0.0066 Score=46.51 Aligned_cols=33 Identities=18% Similarity=0.080 Sum_probs=26.0
Q ss_pred CHHHHHHHHHHHcCC--ceE-EEEeCCc-cchhhhcc
Q 029504 159 GKAAAVQQIRKAHAY--KVL-AMIGDGA-TDLEVSIF 191 (192)
Q Consensus 159 ~K~~~l~~~~~~~g~--~~~-~~iGDs~-~Di~~a~~ 191 (192)
.+...++.+.++++. +++ ++|||+. +|+.+|+.
T Consensus 189 P~~~~~~~~~~~~~~~~~~~~~~IGD~~~~Di~~A~~ 225 (236)
T TIGR01460 189 PSPAIYRAALNLLQARPERRDVMVGDNLRTDILGAKN 225 (236)
T ss_pred CCHHHHHHHHHHhCCCCccceEEECCCcHHHHHHHHH
Confidence 446778888888875 555 9999998 89999864
No 204
>PF05761 5_nucleotid: 5' nucleotidase family; InterPro: IPR008380 This family includes a 5'-nucleotidase, 3.1.3.5 from EC, specific for purines (IMP and GMP) []. These enzymes are members of the Haloacid Dehalogenase (HAD) superfamily. HAD members are recognised by three short motifs {hhhhDxDx(T/V)}, {hhhh(T/S)}, and either {hhhh(D/E)(D/E)x(3-4)(G/N)} or {hhhh(G/N)(D/E)x(3-4)(D/E)} (where "h" stands for a hydrophobic residue). Crystal structures of many HAD enzymes has verified PSI-PRED predictions of secondary structural elements which show each of the "hhhh" sequences of the motifs as part of beta sheets. This subfamily of enzymes is part of "Subfamily I" of the HAD superfamily by virtue of a "cap" domain in between motifs 1 and 2. This subfamily's cap domain has a different predicted secondary structure than all other known HAD enzymes and thus has been designated "subfamily IG", the domain appears to consist of a mixed alpha/beta fold.; PDB: 2BDE_A 2XCW_A 2XCX_A 2XCV_A 2XJB_A 2JCM_A 2XJE_A 2J2C_A 2XJF_A 2XJD_A ....
Probab=96.19 E-value=0.015 Score=48.61 Aligned_cols=38 Identities=21% Similarity=0.399 Sum_probs=30.3
Q ss_pred CCChhHHHHHHHHHHCCCcEEEEcCCcHHhHHHHHHHc
Q 029504 88 RLSPGIDELVKKLKANNKNVYLISGGFRHMINPIASVL 125 (192)
Q Consensus 88 ~~~~~~~e~l~~l~~~g~~~~IvS~~~~~~~~~~l~~~ 125 (192)
...|.+..+|+.+++.|.++.++||+.-.+++..++.+
T Consensus 183 ~k~~~l~~~L~~lr~~GKklFLiTNS~~~yt~~~M~yl 220 (448)
T PF05761_consen 183 HKDPKLPPWLERLRSAGKKLFLITNSPFDYTNAVMSYL 220 (448)
T ss_dssp E--CHHHHHHHHHHCCT-EEEEE-SS-HHHHHHHHHHH
T ss_pred cCCchHHHHHHHHHhcCceEEEecCCCCchhhhhhhhc
Confidence 35678999999999999999999999999999999853
No 205
>KOG2116 consensus Protein involved in plasmid maintenance/nuclear protein involved in lipid metabolism [Cell motility; Lipid transport and metabolism]
Probab=95.98 E-value=0.027 Score=48.56 Aligned_cols=128 Identities=14% Similarity=0.111 Sum_probs=79.5
Q ss_pred hcCCcEEecCCCcccchhHh-hHHHHHHHHHHHHHHHhCCCccHHHHHHHHHhhcCCCHHHHHHHHHhCCCCCChhHHHH
Q 029504 18 RNGLPGCLASLFIENNSCLI-FLDGLTEFIFVFFARAMGGSVPFEEALAARLSLFKPSLSQVQDFLEKRPPRLSPGIDEL 96 (192)
Q Consensus 18 ~~~k~iifD~~~~DGTL~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~ 96 (192)
++-|+||.| +||||+.+ ++-.+.- .+.. ..-+.|+.++
T Consensus 528 Wn~kIVISD---IDGTITKSDvLGh~lp-------------------------~iGk-------------DWTh~GVAkL 566 (738)
T KOG2116|consen 528 WNDKIVISD---IDGTITKSDVLGHVLP-------------------------MIGK-------------DWTHTGVAKL 566 (738)
T ss_pred cCCcEEEec---CCCceEhhhhhhhhhh-------------------------hhcC-------------cchhhhHHHH
Confidence 367999999 99999886 4432111 1111 1245789999
Q ss_pred HHHHHHCCCcEEEEcCCc---HHhHHHHHHHcCCCCCcEEecceeEecCCeee--eccCCCCCcCCCCHHHHHHHHHHHc
Q 029504 97 VKKLKANNKNVYLISGGF---RHMINPIASVLGIPPENIFANQLLFKSSGEFL--GFDANEPTSRSGGKAAAVQQIRKAH 171 (192)
Q Consensus 97 l~~l~~~g~~~~IvS~~~---~~~~~~~l~~~g~~~~~~~~~~~~~~~~g~~~--~~~~~~~~~~~~~K~~~l~~~~~~~ 171 (192)
....+++||++.-+|+.. .+..+.+|+....+....=...+.++.++-|. .+.+....|+ .-|.+.|..+++-+
T Consensus 567 yt~Ik~NGYk~lyLSARaIgQA~~TR~yL~nv~QdG~~LPdGPViLSPd~lf~Al~REVI~RkPe-~FKIAcL~DIk~LF 645 (738)
T KOG2116|consen 567 YTKIKENGYKILYLSARAIGQADSTRQYLKNVEQDGKKLPDGPVILSPDSLFAALHREVIERKPE-VFKIACLTDIKNLF 645 (738)
T ss_pred HHHHHhCCeeEEEEehhhhhhhHHHHHHHHHHhhcCccCCCCCEEeCCCcchHHHHHHHHHcCch-hhhHHHHHHHHHhc
Confidence 999999999999998763 44556677655444211112223344444442 1223333333 37888899998876
Q ss_pred CC---ceEEEEeCCccchh
Q 029504 172 AY---KVLAMIGDGATDLE 187 (192)
Q Consensus 172 g~---~~~~~iGDs~~Di~ 187 (192)
.. .-...||+-.+|.-
T Consensus 646 ~p~~nPFYAgFGNR~TDvi 664 (738)
T KOG2116|consen 646 PPSGNPFYAGFGNRITDVI 664 (738)
T ss_pred CCCCCceeeecCCCcccce
Confidence 53 34677899888863
No 206
>COG3882 FkbH Predicted enzyme involved in methoxymalonyl-ACP biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=95.93 E-value=0.021 Score=47.69 Aligned_cols=86 Identities=15% Similarity=0.121 Sum_probs=56.2
Q ss_pred CCChhHHHHHHHHHHCCCcEEEEcCCcHHhHHHHHHHcCCCCCcEEecceeEecCCeeeeccCCCCCcCCCCHHHHHHHH
Q 029504 88 RLSPGIDELVKKLKANNKNVYLISGGFRHMINPIASVLGIPPENIFANQLLFKSSGEFLGFDANEPTSRSGGKAAAVQQI 167 (192)
Q Consensus 88 ~~~~~~~e~l~~l~~~g~~~~IvS~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~K~~~l~~~ 167 (192)
..+....+++..++++|+-++|+|-.....+..+.+...- -+... ..+.. ....=.+|+..+..+
T Consensus 255 ~~fk~fQ~~Ik~l~kqGVlLav~SKN~~~da~evF~khp~---MiLke-------edfa~-----~~iNW~~K~eNirkI 319 (574)
T COG3882 255 EAFKTFQNFIKGLKKQGVLLAVCSKNTEKDAKEVFRKHPD---MILKE-------EDFAV-----FQINWDPKAENIRKI 319 (574)
T ss_pred hhHHHHHHHHHHHHhccEEEEEecCCchhhHHHHHhhCCC---eEeeH-------hhhhh-----heecCCcchhhHHHH
Confidence 3555666788999999999999997777666666653211 11111 01110 001113699999999
Q ss_pred HHHcCC--ceEEEEeCCccchhh
Q 029504 168 RKAHAY--KVLAMIGDGATDLEV 188 (192)
Q Consensus 168 ~~~~g~--~~~~~iGDs~~Di~~ 188 (192)
++++++ +..+++-|++--.+.
T Consensus 320 AkklNlg~dSmvFiDD~p~ErE~ 342 (574)
T COG3882 320 AKKLNLGLDSMVFIDDNPAEREL 342 (574)
T ss_pred HHHhCCCccceEEecCCHHHHHH
Confidence 999987 888899888755443
No 207
>PLN02645 phosphoglycolate phosphatase
Probab=95.80 E-value=0.0041 Score=49.65 Aligned_cols=32 Identities=16% Similarity=0.230 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHcCC--ceEEEEeCCc-cchhhhcc
Q 029504 160 KAAAVQQIRKAHAY--KVLAMIGDGA-TDLEVSIF 191 (192)
Q Consensus 160 K~~~l~~~~~~~g~--~~~~~iGDs~-~Di~~a~~ 191 (192)
+...+..+++++++ ++++||||+. +|+.+|+-
T Consensus 232 ~p~~~~~a~~~~~~~~~~~~~VGD~~~~Di~~A~~ 266 (311)
T PLN02645 232 STFMMDYLANKFGIEKSQICMVGDRLDTDILFGQN 266 (311)
T ss_pred hHHHHHHHHHHcCCCcccEEEEcCCcHHHHHHHHH
Confidence 55778888888886 8999999997 99999864
No 208
>PLN02151 trehalose-phosphatase
Probab=95.47 E-value=0.018 Score=46.59 Aligned_cols=36 Identities=19% Similarity=0.292 Sum_probs=29.8
Q ss_pred CCChhHHHHHHHHHHCCCcEEEEcCCcHHhHHHHHHH
Q 029504 88 RLSPGIDELVKKLKANNKNVYLISGGFRHMINPIASV 124 (192)
Q Consensus 88 ~~~~~~~e~l~~l~~~g~~~~IvS~~~~~~~~~~l~~ 124 (192)
.+.|++++.|+.|. ++.+++|+||.....+..++..
T Consensus 120 ~~~~~~~~aL~~La-~~~~vaIvSGR~~~~l~~~~~~ 155 (354)
T PLN02151 120 FMSKKMRNTVRKLA-KCFPTAIVSGRCREKVSSFVKL 155 (354)
T ss_pred cCCHHHHHHHHHHh-cCCCEEEEECCCHHHHHHHcCC
Confidence 57799999999999 4579999999998888777653
No 209
>KOG0203 consensus Na+/K+ ATPase, alpha subunit [Inorganic ion transport and metabolism]
Probab=95.34 E-value=0.0094 Score=52.74 Aligned_cols=43 Identities=19% Similarity=0.282 Sum_probs=37.6
Q ss_pred CCCChhHHHHHHHHHHCCCcEEEEcCCcHHhHHHHHHHcCCCC
Q 029504 87 PRLSPGIDELVKKLKANNKNVYLISGGFRHMINPIASVLGIPP 129 (192)
Q Consensus 87 ~~~~~~~~e~l~~l~~~g~~~~IvS~~~~~~~~~~l~~~g~~~ 129 (192)
..|+..+++.+..+++.|+++++||+.-..+++++++..||-.
T Consensus 589 dPPR~~vP~Av~~CrsAGIkvimVTgdhpiTAkAiA~~vgIi~ 631 (1019)
T KOG0203|consen 589 DPPRAAVPDAVGKCRSAGIKVIMVTGDHPITAKAIAKSVGIIS 631 (1019)
T ss_pred CCCcccCchhhhhhhhhCceEEEEecCccchhhhhhhheeeec
Confidence 3688899999999999999999999998888888888887543
No 210
>KOG2882 consensus p-Nitrophenyl phosphatase [Inorganic ion transport and metabolism]
Probab=94.38 E-value=0.14 Score=40.33 Aligned_cols=58 Identities=16% Similarity=0.094 Sum_probs=44.9
Q ss_pred HHHHhhcCCcEEecCCCcccchhHhhHHHHHHHHHHHHHHHhCCCccHHHHHHHHHhhcCCCHHHHHHHHHhCCCCCChh
Q 029504 13 LERLLRNGLPGCLASLFIENNSCLIFLDGLTEFIFVFFARAMGGSVPFEEALAARLSLFKPSLSQVQDFLEKRPPRLSPG 92 (192)
Q Consensus 13 ~~~~~~~~k~iifD~~~~DGTL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (192)
..+.+.++..++|| .||.|+.. ..+.||
T Consensus 15 ~~e~l~~~DtfifD---cDGVlW~g-------------------------------------------------~~~ipG 42 (306)
T KOG2882|consen 15 ARELLDSFDTFIFD---CDGVLWLG-------------------------------------------------EKPIPG 42 (306)
T ss_pred HHHHHhhcCEEEEc---CCcceeec-------------------------------------------------CCCCCC
Confidence 44566789999999 99998641 247799
Q ss_pred HHHHHHHHHHCCCcEEEEcCCcHHhHHHHH
Q 029504 93 IDELVKKLKANNKNVYLISGGFRHMINPIA 122 (192)
Q Consensus 93 ~~e~l~~l~~~g~~~~IvS~~~~~~~~~~l 122 (192)
+.|.++.|++.|-.+.++||+.....+..+
T Consensus 43 s~e~l~~L~~~gK~i~fvTNNStksr~~y~ 72 (306)
T KOG2882|consen 43 SPEALNLLKSLGKQIIFVTNNSTKSREQYM 72 (306)
T ss_pred hHHHHHHHHHcCCcEEEEeCCCcchHHHHH
Confidence 999999999999899999988655444433
No 211
>KOG0208 consensus Cation transport ATPase [Inorganic ion transport and metabolism]
Probab=94.28 E-value=0.23 Score=45.08 Aligned_cols=42 Identities=14% Similarity=0.195 Sum_probs=38.4
Q ss_pred CCChhHHHHHHHHHHCCCcEEEEcCCcHHhHHHHHHHcCCCC
Q 029504 88 RLSPGIDELVKKLKANNKNVYLISGGFRHMINPIASVLGIPP 129 (192)
Q Consensus 88 ~~~~~~~e~l~~l~~~g~~~~IvS~~~~~~~~~~l~~~g~~~ 129 (192)
++.+..+.+|+.|.+.++..+++||+.-.+.-.+.+.+|+-.
T Consensus 705 kLK~~T~~VI~eL~~AnIRtVMcTGDNllTaisVakeCgmi~ 746 (1140)
T KOG0208|consen 705 KLKEETKRVIDELNRANIRTVMCTGDNLLTAISVAKECGMIE 746 (1140)
T ss_pred ccccccHHHHHHHHhhcceEEEEcCCchheeeehhhcccccC
Confidence 478899999999999999999999999999999999998754
No 212
>KOG4549 consensus Magnesium-dependent phosphatase [General function prediction only]
Probab=94.22 E-value=0.28 Score=33.67 Aligned_cols=88 Identities=13% Similarity=0.107 Sum_probs=58.9
Q ss_pred CCCChhHHHHHHHHHHCCCcEEEEcCCc-HHhHHHHHHHcCCCCCcEEecceeEecCCeeeeccCCCCCcCCCCHHHHHH
Q 029504 87 PRLSPGIDELVKKLKANNKNVYLISGGF-RHMINPIASVLGIPPENIFANQLLFKSSGEFLGFDANEPTSRSGGKAAAVQ 165 (192)
Q Consensus 87 ~~~~~~~~e~l~~l~~~g~~~~IvS~~~-~~~~~~~l~~~g~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~K~~~l~ 165 (192)
...+++++.+|..|+++|+.++++|.++ .++++..|+.+.+...-+....+. .++...+ .+.+|.-.+.
T Consensus 43 ~~fY~Di~rIL~dLk~~GVtl~~ASRt~ap~iA~q~L~~fkvk~~Gvlkps~e-----~ft~~~~-----g~gsklghfk 112 (144)
T KOG4549|consen 43 MIFYDDIRRILVDLKKLGVTLIHASRTMAPQIASQGLETFKVKQTGVLKPSLE-----EFTFEAV-----GDGSKLGHFK 112 (144)
T ss_pred eeeccchhHHHHHHHhcCcEEEEecCCCCHHHHHHHHHHhccCcccccchhhh-----cCceeee-----cCcccchhHH
Confidence 4689999999999999999999999875 568899999988874333322221 1111111 1246777777
Q ss_pred HHHHHcCC--ceEEEEeCCcc
Q 029504 166 QIRKAHAY--KVLAMIGDGAT 184 (192)
Q Consensus 166 ~~~~~~g~--~~~~~iGDs~~ 184 (192)
++-+..+. ++..++-|-..
T Consensus 113 e~~n~s~~~~k~~~~fdDesr 133 (144)
T KOG4549|consen 113 EFTNNSNSIEKNKQVFDDESR 133 (144)
T ss_pred HHhhccCcchhceeeeccccc
Confidence 77766665 56666666543
No 213
>COG4850 Uncharacterized conserved protein [Function unknown]
Probab=93.04 E-value=0.56 Score=37.47 Aligned_cols=93 Identities=15% Similarity=0.269 Sum_probs=58.6
Q ss_pred CCCChhHHHHHHHHHHCC-CcEEEEcCCcHHhH---HHHHHHcCCCCCcEEecceeEecCCeeeeccCCCCCcCCCCHHH
Q 029504 87 PRLSPGIDELVKKLKANN-KNVYLISGGFRHMI---NPIASVLGIPPENIFANQLLFKSSGEFLGFDANEPTSRSGGKAA 162 (192)
Q Consensus 87 ~~~~~~~~e~l~~l~~~g-~~~~IvS~~~~~~~---~~~l~~~g~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~K~~ 162 (192)
..+.||+-.+.+.+.+.| .+++-+|+++-..- ..++..-+++....|-.. -.+.+... -.+....|..
T Consensus 195 r~~ipGV~~~yr~l~~~~~apvfYvSnSPw~~f~~L~efi~~~~~P~GPl~L~~----~g~~~~~i----~~sga~rK~~ 266 (373)
T COG4850 195 RQVIPGVSAWYRALTNLGDAPVFYVSNSPWQLFPTLQEFITNRNFPYGPLLLRR----WGGVLDNI----IESGAARKGQ 266 (373)
T ss_pred cCCCCCHHHHHHHHHhcCCCCeEEecCChhHhHHHHHHHHhcCCCCCCchhHhh----cCCccccc----ccchhhhccc
Confidence 368899999999999998 89999999987654 444444445422111110 01111110 1122346778
Q ss_pred HHHHHHHHcCCceEEEEeCC-ccchh
Q 029504 163 AVQQIRKAHAYKVLAMIGDG-ATDLE 187 (192)
Q Consensus 163 ~l~~~~~~~g~~~~~~iGDs-~~Di~ 187 (192)
.+.-++.+|.-...+-+||| ..|.+
T Consensus 267 ~l~nil~~~p~~kfvLVGDsGE~Dpe 292 (373)
T COG4850 267 SLRNILRRYPDRKFVLVGDSGEHDPE 292 (373)
T ss_pred HHHHHHHhCCCceEEEecCCCCcCHH
Confidence 88877777765688999998 45765
No 214
>COG5083 SMP2 Uncharacterized protein involved in plasmid maintenance [General function prediction only]
Probab=91.84 E-value=0.39 Score=39.86 Aligned_cols=30 Identities=20% Similarity=0.087 Sum_probs=21.4
Q ss_pred CHHHHHHHHHHHcCCce--EEEEeCCccchhh
Q 029504 159 GKAAAVQQIRKAHAYKV--LAMIGDGATDLEV 188 (192)
Q Consensus 159 ~K~~~l~~~~~~~g~~~--~~~iGDs~~Di~~ 188 (192)
-|...+..+++.++-.+ ..-||+-..|+..
T Consensus 478 FKiayLndl~slf~e~~PFyAGFGNriTDvis 509 (580)
T COG5083 478 FKIAYLNDLKSLFIEFDPFYAGFGNRITDVIS 509 (580)
T ss_pred HHHHHHHHHHHhhCcCChhhccccccchhhee
Confidence 68888889888765423 3468888888754
No 215
>PLN03063 alpha,alpha-trehalose-phosphate synthase (UDP-forming); Provisional
Probab=90.97 E-value=0.27 Score=44.39 Aligned_cols=39 Identities=18% Similarity=0.282 Sum_probs=33.2
Q ss_pred CCChhHHHHHHHHHHC-CCcEEEEcCCcHHhHHHHHHHcC
Q 029504 88 RLSPGIDELVKKLKAN-NKNVYLISGGFRHMINPIASVLG 126 (192)
Q Consensus 88 ~~~~~~~e~l~~l~~~-g~~~~IvS~~~~~~~~~~l~~~g 126 (192)
.+.|++.++|+.|.+. +-.++|+||.....++..+...+
T Consensus 532 ~p~~~l~~~L~~L~~d~~~~V~IvSGR~~~~L~~~~~~~~ 571 (797)
T PLN03063 532 GLHPELKETLKALCSDPKTTVVVLSRSGKDILDKNFGEYN 571 (797)
T ss_pred CCCHHHHHHHHHHHcCCCCEEEEEeCCCHHHHHHHhCCCC
Confidence 4779999999999886 67899999999999988887544
No 216
>PF14336 DUF4392: Domain of unknown function (DUF4392)
Probab=90.48 E-value=3.2 Score=32.93 Aligned_cols=39 Identities=21% Similarity=0.387 Sum_probs=30.2
Q ss_pred ChhHHHHHHHHHHCCCcEEEEcCCcHH-hHHHHHHHcCCC
Q 029504 90 SPGIDELVKKLKANNKNVYLISGGFRH-MINPIASVLGIP 128 (192)
Q Consensus 90 ~~~~~e~l~~l~~~g~~~~IvS~~~~~-~~~~~l~~~g~~ 128 (192)
.+|+..+-+.|++.|.++.|+|..... .++..++.++..
T Consensus 62 P~GA~aLa~aL~~lG~~~~ivtd~~~~~~~~~~~~~~~~~ 101 (291)
T PF14336_consen 62 PPGAAALARALQALGKEVVIVTDERCAPVVKAAVRAAGLQ 101 (291)
T ss_pred hHHHHHHHHHHHHcCCeEEEEECHHHHHHHHHHHHHHhhC
Confidence 479999999999999999999977544 556666655554
No 217
>TIGR01460 HAD-SF-IIA Haloacid Dehalogenase Superfamily Class (subfamily) IIA. Many of the genes in this subfamily have been annotated as "pNPPase" "4-nitrophenyl phosphatase" or "NPPase". These all refer to the same activity versus a common lab test compound used to determine phosphatase activity. There is no evidence that this activity is physiologically relevant.
Probab=90.32 E-value=0.24 Score=37.84 Aligned_cols=12 Identities=17% Similarity=-0.100 Sum_probs=10.7
Q ss_pred EEecCCCcccchhHh
Q 029504 23 GCLASLFIENNSCLI 37 (192)
Q Consensus 23 iifD~~~~DGTL~~~ 37 (192)
++|| +||||++.
T Consensus 1 ~lfD---~DGvL~~~ 12 (236)
T TIGR01460 1 FLFD---IDGVLWLG 12 (236)
T ss_pred CEEe---CcCccCcC
Confidence 5899 99999985
No 218
>KOG0205 consensus Plasma membrane H+-transporting ATPase [Inorganic ion transport and metabolism]
Probab=90.31 E-value=0.6 Score=40.86 Aligned_cols=101 Identities=18% Similarity=0.216 Sum_probs=67.1
Q ss_pred CCChhHHHHHHHHHHCCCcEEEEcCCcHHhHHHHHHHcCCCCCcEEecceeEec--CCeeeeccC--------CCCCcCC
Q 029504 88 RLSPGIDELVKKLKANNKNVYLISGGFRHMINPIASVLGIPPENIFANQLLFKS--SGEFLGFDA--------NEPTSRS 157 (192)
Q Consensus 88 ~~~~~~~e~l~~l~~~g~~~~IvS~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~--~g~~~~~~~--------~~~~~~~ 157 (192)
+|+.+.-+.++.....|..+-++|++-.......-+++|..- +.+...-.... ++...+-+. +-....|
T Consensus 492 pprhdsa~tirral~lGv~VkmitgdqlaI~keTgrrlgmgt-nmypss~llG~~~~~~~~~~~v~elie~adgfAgVfp 570 (942)
T KOG0205|consen 492 PPRHDSAETIRRALNLGVNVKMITGDQLAIAKETGRRLGMGT-NMYPSSALLGLGKDGSMPGSPVDELIEKADGFAGVFP 570 (942)
T ss_pred CCccchHHHHHHHHhccceeeeecchHHHHHHhhhhhhcccc-CcCCchhhccCCCCCCCCCCcHHHHhhhccCccccCH
Confidence 467889999999999999999999999888888888888753 33331111110 111111000 0011123
Q ss_pred CCHHHHHHHHHHHcCCceEEEEeCCccchhhhcc
Q 029504 158 GGKAAAVQQIRKAHAYKVLAMIGDGATDLEVSIF 191 (192)
Q Consensus 158 ~~K~~~l~~~~~~~g~~~~~~iGDs~~Di~~a~~ 191 (192)
..|.+.+..+.++ +. .|-+.||+.||.++++.
T Consensus 571 ehKy~iV~~Lq~r-~h-i~gmtgdgvndapaLKk 602 (942)
T KOG0205|consen 571 EHKYEIVKILQER-KH-IVGMTGDGVNDAPALKK 602 (942)
T ss_pred HHHHHHHHHHhhc-Cc-eecccCCCcccchhhcc
Confidence 4688888888765 32 79999999999998874
No 219
>PF06014 DUF910: Bacterial protein of unknown function (DUF910); InterPro: IPR009256 This family consists of several short bacterial proteins of unknown function.; PDB: 2NN4_A.
Probab=88.96 E-value=0.13 Score=30.58 Aligned_cols=26 Identities=31% Similarity=0.446 Sum_probs=17.3
Q ss_pred HHHHHHHHcCCceEEEEeCCccchhhhc
Q 029504 163 AVQQIRKAHAYKVLAMIGDGATDLEVSI 190 (192)
Q Consensus 163 ~l~~~~~~~g~~~~~~iGDs~~Di~~a~ 190 (192)
=++++++++| -.+|+||-..|++|.+
T Consensus 6 DVqQLLK~fG--~~IY~gdr~~DielM~ 31 (62)
T PF06014_consen 6 DVQQLLKKFG--IIIYVGDRLWDIELME 31 (62)
T ss_dssp HHHHHHHTTS-------S-HHHHHHHHH
T ss_pred HHHHHHHHCC--EEEEeCChHHHHHHHH
Confidence 4788999999 7899999999999875
No 220
>COG5663 Uncharacterized conserved protein [Function unknown]
Probab=88.79 E-value=0.89 Score=32.88 Aligned_cols=28 Identities=14% Similarity=0.227 Sum_probs=17.8
Q ss_pred CCChhHHHHHHHHHHCCCcEEEEcCCcHH
Q 029504 88 RLSPGIDELVKKLKANNKNVYLISGGFRH 116 (192)
Q Consensus 88 ~~~~~~~e~l~~l~~~g~~~~IvS~~~~~ 116 (192)
....+++..|..++++. .++-+|+....
T Consensus 72 l~~q~v~~~L~~~~e~~-~L~~itar~~d 99 (194)
T COG5663 72 LLAQLVKQVLPSLKEEH-RLIYITARKAD 99 (194)
T ss_pred HHHHHHHHHhHHHHhhc-eeeeeehhhHH
Confidence 35567778888888775 44555555444
No 221
>COG0731 Fe-S oxidoreductases [Energy production and conversion]
Probab=87.90 E-value=2.1 Score=34.00 Aligned_cols=40 Identities=25% Similarity=0.517 Sum_probs=33.3
Q ss_pred CCCCCChhHHHHHHHHHHCC-CcEEEEcCCcHHhHHHHHHHcCC
Q 029504 85 RPPRLSPGIDELVKKLKANN-KNVYLISGGFRHMINPIASVLGI 127 (192)
Q Consensus 85 ~~~~~~~~~~e~l~~l~~~g-~~~~IvS~~~~~~~~~~l~~~g~ 127 (192)
..+.++|...++++.+++.| .+++|+||+.. ..+++.+..
T Consensus 89 GEPTLy~~L~elI~~~k~~g~~~tflvTNgsl---pdv~~~L~~ 129 (296)
T COG0731 89 GEPTLYPNLGELIEEIKKRGKKTTFLVTNGSL---PDVLEELKL 129 (296)
T ss_pred CCcccccCHHHHHHHHHhcCCceEEEEeCCCh---HHHHHHhcc
Confidence 34789999999999999999 79999999987 555665553
No 222
>KOG3189 consensus Phosphomannomutase [Lipid transport and metabolism]
Probab=87.63 E-value=5.5 Score=29.83 Aligned_cols=33 Identities=21% Similarity=0.420 Sum_probs=26.0
Q ss_pred CcCCCCHHHHHHHHHHHcCCceEEEEeCC----ccchh
Q 029504 154 TSRSGGKAAAVQQIRKAHAYKVLAMIGDG----ATDLE 187 (192)
Q Consensus 154 ~~~~~~K~~~l~~~~~~~g~~~~~~iGDs----~~Di~ 187 (192)
-|.+.+|-..++++.+. |.+.+.++||- -||.+
T Consensus 188 FP~GWDKtyCLqhle~d-gf~~IhFFGDkT~~GGNDyE 224 (252)
T KOG3189|consen 188 FPKGWDKTYCLQHLEKD-GFDTIHFFGDKTMPGGNDYE 224 (252)
T ss_pred cCCCcchhHHHHHhhhc-CCceEEEeccccCCCCCcce
Confidence 45567999999998876 78899999995 36654
No 223
>TIGR02468 sucrsPsyn_pln sucrose phosphate synthase/possible sucrose phosphate phosphatase, plant. Members of this family are sucrose-phosphate synthases of plants. This enzyme is known to exist in multigene families in several species of both monocots and dicots. The N-terminal domain is the glucosyltransferase domain. Members of this family also have a variable linker region and a C-terminal domain that resembles sucrose phosphate phosphatase (SPP) (EC 3.1.3.24) (see TIGR01485), the next and final enzyme of sucrose biosynthesis. The SPP-like domain likely serves a binding and not a catalytic function, as the reported SPP is always encoded by a distinct protein.
Probab=87.15 E-value=2 Score=39.92 Aligned_cols=63 Identities=11% Similarity=0.202 Sum_probs=43.1
Q ss_pred HHhHHHHHHHcCCCCCcEEecceeEecCCeeeeccCCCCCcCCCCHHHHHHHHHHHcCC--ceE-EEEeCCcc-chhh
Q 029504 115 RHMINPIASVLGIPPENIFANQLLFKSSGEFLGFDANEPTSRSGGKAAAVQQIRKAHAY--KVL-AMIGDGAT-DLEV 188 (192)
Q Consensus 115 ~~~~~~~l~~~g~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~K~~~l~~~~~~~g~--~~~-~~iGDs~~-Di~~ 188 (192)
..-++..|+..++.+ +++ ...++.+. ...|...+|+.++..+..++|+ +++ +++|||-| |+++
T Consensus 923 v~elr~~Lr~~gLr~-~~i-----ys~~~~~L-----DVlP~~ASKgqAlRyL~~rwgi~l~~v~VfaGdSGntD~e~ 989 (1050)
T TIGR02468 923 VKELRKLLRIQGLRC-HAV-----YCRNGTRL-----NVIPLLASRSQALRYLFVRWGIELANMAVFVGESGDTDYEG 989 (1050)
T ss_pred HHHHHHHHHhCCCce-EEE-----eecCCcEe-----eeeeCCCCHHHHHHHHHHHcCCChHHeEEEeccCCCCCHHH
Confidence 346778888888874 221 22222222 2344557999999999999998 666 55999999 9764
No 224
>KOG2961 consensus Predicted hydrolase (HAD superfamily) [General function prediction only]
Probab=86.65 E-value=5 Score=28.68 Aligned_cols=82 Identities=20% Similarity=0.282 Sum_probs=47.2
Q ss_pred CChhHHHHHHHHHHC-C-CcEEEEcCCcH--------HhHHHHHHHcCCCCCcEEecceeEecCCeeeeccCCCCCcCCC
Q 029504 89 LSPGIDELVKKLKAN-N-KNVYLISGGFR--------HMINPIASVLGIPPENIFANQLLFKSSGEFLGFDANEPTSRSG 158 (192)
Q Consensus 89 ~~~~~~e~l~~l~~~-g-~~~~IvS~~~~--------~~~~~~l~~~g~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 158 (192)
+-|....-++.+++. | ..++|+|++-. ..+..+-...||+ +.- +.+.+|.
T Consensus 62 Iwp~~l~~ie~~~~vygek~i~v~SNsaG~~~~D~d~s~Ak~le~k~gIp---VlR-----------------Hs~kKP~ 121 (190)
T KOG2961|consen 62 IWPPLLPSIERCKAVYGEKDIAVFSNSAGLTEYDHDDSKAKALEAKIGIP---VLR-----------------HSVKKPA 121 (190)
T ss_pred cCchhHHHHHHHHHHhCcccEEEEecCcCccccCCchHHHHHHHHhhCCc---eEe-----------------ecccCCC
Confidence 445555566666664 4 56788876521 1233333456665 111 2223345
Q ss_pred CHHHHHHHHHHHcCC---ceEEEEeCCc-cchhhhc
Q 029504 159 GKAAAVQQIRKAHAY---KVLAMIGDGA-TDLEVSI 190 (192)
Q Consensus 159 ~K~~~l~~~~~~~g~---~~~~~iGDs~-~Di~~a~ 190 (192)
+..+.+..+..--.+ +++++|||.. .||-||.
T Consensus 122 ct~E~~~y~~~Nshv~~~se~~~vGDRlfTDI~~aN 157 (190)
T KOG2961|consen 122 CTAEEVEYHFGNSHVCTSSELIMVGDRLFTDIVYAN 157 (190)
T ss_pred ccHHHHHHHhCCcccCChhHeEEEccchhhhHhhhh
Confidence 666766666432223 8999999995 7988764
No 225
>PF00702 Hydrolase: haloacid dehalogenase-like hydrolase; InterPro: IPR005834 This group of hydrolase enzymes is structurally different from the alpha/beta hydrolase family (abhydrolase). This group includes L-2-haloacid dehalogenase, epoxide hydrolases and phosphatases. The structure consists of two domains. One is an inserted four helix bundle, which is the least well conserved region of the alignment, between residues 16 and 96 of HAD1_PSESP. The rest of the fold is composed of the core alpha/beta domain.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 1TE2_A 3NAL_A 3NAM_A 3NAN_A 3A1D_B 3J09_A 3J08_A 2B8E_C 3A1E_A 2VOY_J ....
Probab=84.76 E-value=0.34 Score=35.82 Aligned_cols=15 Identities=7% Similarity=-0.208 Sum_probs=13.1
Q ss_pred CCcEEecCCCcccchhHh
Q 029504 20 GLPGCLASLFIENNSCLI 37 (192)
Q Consensus 20 ~k~iifD~~~~DGTL~~~ 37 (192)
+++|+|| +||||++.
T Consensus 1 i~~i~fD---ktGTLt~~ 15 (215)
T PF00702_consen 1 IDAICFD---KTGTLTQG 15 (215)
T ss_dssp ESEEEEE---CCTTTBES
T ss_pred CeEEEEe---cCCCcccC
Confidence 3789999 99999875
No 226
>PF09949 DUF2183: Uncharacterized conserved protein (DUF2183); InterPro: IPR019236 This domain, found in various bacterial and fungal proteins, has no known function.
Probab=84.70 E-value=9 Score=25.21 Aligned_cols=74 Identities=16% Similarity=0.306 Sum_probs=43.5
Q ss_pred EEEEcCCcHH---hHHHHHHHcCCCCCcEEecceeEecCCeeeeccCCCCCcCC-CCHHHHHHHHHHHcCCceEEEEeCC
Q 029504 107 VYLISGGFRH---MINPIASVLGIPPENIFANQLLFKSSGEFLGFDANEPTSRS-GGKAAAVQQIRKAHAYKVLAMIGDG 182 (192)
Q Consensus 107 ~~IvS~~~~~---~~~~~l~~~g~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~-~~K~~~l~~~~~~~g~~~~~~iGDs 182 (192)
+.-||+++-. .+..+++..|++...++-... .+.+.+.. .... ..|...+.++++.+--...+.||||
T Consensus 2 f~YvS~SPwnly~~l~~Fl~~~~~P~G~~~Lr~~----~~~~~~~~----~~~~~~~K~~~i~~i~~~fP~~kfiLIGDs 73 (100)
T PF09949_consen 2 FFYVSNSPWNLYPFLRDFLRRNGFPAGPLLLRDY----GPSLSGLF----KSGAEEHKRDNIERILRDFPERKFILIGDS 73 (100)
T ss_pred EEEEcCCHHHHHHHHHHHHHhcCCCCCceEcccC----Cccccccc----cCCchhHHHHHHHHHHHHCCCCcEEEEeeC
Confidence 4567877654 456666667777533333222 11111100 0111 3688999999988765789999999
Q ss_pred c-cchhh
Q 029504 183 A-TDLEV 188 (192)
Q Consensus 183 ~-~Di~~ 188 (192)
- .|.+.
T Consensus 74 gq~Dpei 80 (100)
T PF09949_consen 74 GQHDPEI 80 (100)
T ss_pred CCcCHHH
Confidence 6 47553
No 227
>COG4483 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=83.08 E-value=0.75 Score=27.48 Aligned_cols=26 Identities=27% Similarity=0.405 Sum_probs=23.1
Q ss_pred HHHHHHHHcCCceEEEEeCCccchhhhc
Q 029504 163 AVQQIRKAHAYKVLAMIGDGATDLEVSI 190 (192)
Q Consensus 163 ~l~~~~~~~g~~~~~~iGDs~~Di~~a~ 190 (192)
-++++++.+| -++|+||-..|++|.+
T Consensus 6 DVqQlLK~~G--~ivyfg~r~~~iemm~ 31 (68)
T COG4483 6 DVQQLLKKFG--IIVYFGKRLYDIEMMQ 31 (68)
T ss_pred HHHHHHHHCC--eeeecCCHHHHHHHHH
Confidence 4788999999 7899999999999975
No 228
>KOG2470 consensus Similar to IMP-GMP specific 5'-nucleotidase [Nucleotide transport and metabolism]
Probab=82.85 E-value=1.5 Score=35.55 Aligned_cols=35 Identities=20% Similarity=0.391 Sum_probs=30.2
Q ss_pred ChhHHHHHHHHHHCCCcEEEEcCCcHHhHHHHHHH
Q 029504 90 SPGIDELVKKLKANNKNVYLISGGFRHMINPIASV 124 (192)
Q Consensus 90 ~~~~~e~l~~l~~~g~~~~IvS~~~~~~~~~~l~~ 124 (192)
.|....+++.|++.|.+++++|+++..++..-++.
T Consensus 242 ~~ql~~fl~kL~~~GKklFLiTNSPysFVd~GM~f 276 (510)
T KOG2470|consen 242 NPQLLAFLRKLKDHGKKLFLITNSPYSFVDKGMRF 276 (510)
T ss_pred cHHHHHHHHHHHHhcCcEEEEeCCchhhhhcCcee
Confidence 46788899999999999999999999888766653
No 229
>KOG1618 consensus Predicted phosphatase [General function prediction only]
Probab=82.49 E-value=5.8 Score=31.89 Aligned_cols=41 Identities=20% Similarity=0.346 Sum_probs=30.3
Q ss_pred CCChhHHHHHHHHHHC----CCcEEEEcCCcHH----hHHHHHHHcCCC
Q 029504 88 RLSPGIDELVKKLKAN----NKNVYLISGGFRH----MINPIASVLGIP 128 (192)
Q Consensus 88 ~~~~~~~e~l~~l~~~----g~~~~IvS~~~~~----~~~~~l~~~g~~ 128 (192)
.+.|++.+.++.|.++ .++.+.+|++... -++.+-..+|..
T Consensus 51 ~~i~~~~~Alr~L~~~~g~lkIP~vfLTNGGg~~E~~rA~~lS~~Lgv~ 99 (389)
T KOG1618|consen 51 RPIPGALKALRRLVDNQGQLKIPFVFLTNGGGILESSRAQELSALLGVE 99 (389)
T ss_pred CCCcchHHHHHHHHhcCCCeeccEEEEeCCCCcchhhHHHHHHHhhCCc
Confidence 4778999999999998 7999999987533 234444556664
No 230
>PLN02588 glycerol-3-phosphate acyltransferase
Probab=81.68 E-value=2 Score=36.59 Aligned_cols=81 Identities=15% Similarity=0.103 Sum_probs=51.0
Q ss_pred CChhHHHHHHHHHHCCCcEEEEcCCcHHhHHHHHH-HcCCCCCcEEecceeEecCCeeeeccCCCCCcCCCCHHHHHHH-
Q 029504 89 LSPGIDELVKKLKANNKNVYLISGGFRHMINPIAS-VLGIPPENIFANQLLFKSSGEFLGFDANEPTSRSGGKAAAVQQ- 166 (192)
Q Consensus 89 ~~~~~~e~l~~l~~~g~~~~IvS~~~~~~~~~~l~-~~g~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~K~~~l~~- 166 (192)
+.+..-+.+ +..+ +.+++|+.++..++.+++ .+|.+ .+++.++.+ ..|.++|...+ .+|......
T Consensus 134 v~~e~~~v~---~~~~-~~~vv~~~PrvMve~Flkeyl~~d--~V~g~El~~-~~g~~tG~~~~------~~~~~~~~~~ 200 (525)
T PLN02588 134 VGLEMFQVL---KRGG-KRVGVSDLPQVMIDVFLRDYLEIE--VVVGRDMKM-VGGYYLGIMED------KKKHELAFDK 200 (525)
T ss_pred cCHHHHHHH---hhcC-cEEEEecCCHHHHHHHHHHhcCcc--eEeeeeEEE-eeeEEEEEEcc------cchHHHHHHH
Confidence 334444444 3334 566777799999999997 68888 899999987 47888886552 245444433
Q ss_pred HHH-H-cCCceEEEEeCC
Q 029504 167 IRK-A-HAYKVLAMIGDG 182 (192)
Q Consensus 167 ~~~-~-~g~~~~~~iGDs 182 (192)
+.. . .+....+-+||+
T Consensus 201 ~~~~~~~~~~~~vG~~~~ 218 (525)
T PLN02588 201 VVQEERLNSGRLIGITSF 218 (525)
T ss_pred HhcccCcccccceeeccc
Confidence 221 1 011236777776
No 231
>KOG2630 consensus Enolase-phosphatase E-1 [Amino acid transport and metabolism]
Probab=81.38 E-value=8.1 Score=29.55 Aligned_cols=91 Identities=7% Similarity=0.042 Sum_probs=55.9
Q ss_pred CCCChhHHHHHHHHHHCCCcEEEEcCCcHHhHHHHHHHcCCCC-CcEEecceeEecCCeeeeccCCCCCcCCCCHHHHHH
Q 029504 87 PRLSPGIDELVKKLKANNKNVYLISGGFRHMINPIASVLGIPP-ENIFANQLLFKSSGEFLGFDANEPTSRSGGKAAAVQ 165 (192)
Q Consensus 87 ~~~~~~~~e~l~~l~~~g~~~~IvS~~~~~~~~~~l~~~g~~~-~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~K~~~l~ 165 (192)
.+.++++...+++.+..|++++|-|++.....+.+..+-+-.. -.+++..+.. ..+.. .-.....
T Consensus 122 ~~v~aDv~~a~e~w~~~g~~vyIYSSgsv~AqKllfg~s~~gdl~~y~~gyfDt---------~iG~K-----~e~~sy~ 187 (254)
T KOG2630|consen 122 AHVYADVLPAIERWSGEGVRVYIYSSGSVAAQKLLFGYSDAGDLRKYISGYFDT---------TIGLK-----VESQSYK 187 (254)
T ss_pred ccccchhHHHHHHHhhcCceEEEEcCCcHHHHHHHHcccCcchHHHHhhhhhhc---------cccce-----ehhHHHH
Confidence 4789999999999999999999999998877776665432210 0111111100 00000 1122344
Q ss_pred HHHHHcCC--ceEEEEeCCccchhhhcc
Q 029504 166 QIRKAHAY--KVLAMIGDGATDLEVSIF 191 (192)
Q Consensus 166 ~~~~~~g~--~~~~~iGDs~~Di~~a~~ 191 (192)
.+....|. +++++.-|-..-..+|++
T Consensus 188 ~I~~~Ig~s~~eiLfLTd~~~Ea~aa~~ 215 (254)
T KOG2630|consen 188 KIGHLIGKSPREILFLTDVPREAAAARK 215 (254)
T ss_pred HHHHHhCCChhheEEeccChHHHHHHHh
Confidence 44444554 788888888877777664
No 232
>PF00875 DNA_photolyase: DNA photolyase from Prosite.; InterPro: IPR006050 DNA photolyases are enzymes that bind to DNA containing pyrimidine dimers: on absorption of visible light, they catalyse dimer splitting into the constituent monomers, a process called photoreactivation []. This is a DNA repair mechanism, repairing mismatched pyrimidine dimers induced by exposure to ultra-violet light []. The precise mechanisms involved in substrate binding, conversion of light energy to the mechanical energy needed to rupture the cyclobutane ring, and subsequent release of the product are uncertain []. Analysis of DNA lyases has revealed the presence of an intrinsic chromophore, all monomers containing a reduced FAD moiety, and, in addition, either a reduced pterin or 8-hydroxy-5-diazaflavin as a second chromophore [, ]. Either chromophore may act as the primary photon acceptor, peak absorptions occurring in the blue region of the spectrum and in the UV-B region, at a wavelength around 290nm []. This domain binds a light harvesting cofactor.; GO: 0003913 DNA photolyase activity, 0006281 DNA repair; PDB: 3UMV_A 2J07_A 1IQU_A 2J09_A 2J08_A 1IQR_A 1DNP_A 3FY4_B 2VTB_A 2J4D_B ....
Probab=80.59 E-value=8.3 Score=27.50 Aligned_cols=77 Identities=16% Similarity=0.257 Sum_probs=51.6
Q ss_pred CChhHHHHHHHHHHCCCcEEEEcCCcHHhHHHHHHHcCCCCCcEEecceeEecCCeeeeccCCCCCcCCCCHHHHHHHHH
Q 029504 89 LSPGIDELVKKLKANNKNVYLISGGFRHMINPIASVLGIPPENIFANQLLFKSSGEFLGFDANEPTSRSGGKAAAVQQIR 168 (192)
Q Consensus 89 ~~~~~~e~l~~l~~~g~~~~IvS~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~K~~~l~~~~ 168 (192)
+..++.++=+.|++.|.++.+..+.....+..+++.+++. .++.+.- +. +.....-..+.+.+
T Consensus 51 l~~sL~~L~~~L~~~g~~L~v~~g~~~~~l~~l~~~~~~~--~V~~~~~-------~~--------~~~~~rd~~v~~~l 113 (165)
T PF00875_consen 51 LLESLADLQESLRKLGIPLLVLRGDPEEVLPELAKEYGAT--AVYFNEE-------YT--------PYERRRDERVRKAL 113 (165)
T ss_dssp HHHHHHHHHHHHHHTTS-EEEEESSHHHHHHHHHHHHTES--EEEEE----------S--------HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCcceEEEecchHHHHHHHHHhcCcC--eeEeccc-------cC--------HHHHHHHHHHHHHH
Confidence 3467778888899999999999999999999999999987 7776532 11 11113456677788
Q ss_pred HHcCCceEEEEeCC
Q 029504 169 KAHAYKVLAMIGDG 182 (192)
Q Consensus 169 ~~~g~~~~~~iGDs 182 (192)
++.|+.-..+-|+.
T Consensus 114 ~~~~i~~~~~~~~~ 127 (165)
T PF00875_consen 114 KKHGIKVHTFDDHT 127 (165)
T ss_dssp HHTTSEEEEE--SS
T ss_pred HhcceEEEEECCcE
Confidence 87777333333333
No 233
>PLN02151 trehalose-phosphatase
Probab=76.51 E-value=2.6 Score=34.39 Aligned_cols=34 Identities=24% Similarity=0.253 Sum_probs=28.4
Q ss_pred CCCHHHHHHHHHHHcCCc-----eEEEEeCCccchhhhc
Q 029504 157 SGGKAAAVQQIRKAHAYK-----VLAMIGDGATDLEVSI 190 (192)
Q Consensus 157 ~~~K~~~l~~~~~~~g~~-----~~~~iGDs~~Di~~a~ 190 (192)
+.+|+.++..++++++.. -.+|+||-.+|-.|.+
T Consensus 267 ~~dKG~Av~~Ll~~~~~~~~~~~~pvyiGDD~TDEDaF~ 305 (354)
T PLN02151 267 KWDKGKALEFLLESLGYANCTDVFPIYIGDDRTDEDAFK 305 (354)
T ss_pred CCCHHHHHHHHHHhcccccCCCCeEEEEcCCCcHHHHHH
Confidence 468999999999988752 2799999999988765
No 234
>PRK13762 tRNA-modifying enzyme; Provisional
Probab=73.86 E-value=4.4 Score=32.64 Aligned_cols=30 Identities=27% Similarity=0.568 Sum_probs=26.7
Q ss_pred CCCCChhHHHHHHHHHHCCCcEEEEcCCcH
Q 029504 86 PPRLSPGIDELVKKLKANNKNVYLISGGFR 115 (192)
Q Consensus 86 ~~~~~~~~~e~l~~l~~~g~~~~IvS~~~~ 115 (192)
.+.++|.+.++++.++++|+.+.|+||+..
T Consensus 140 EPlL~p~l~eli~~~k~~Gi~~~L~TNG~~ 169 (322)
T PRK13762 140 EPTLYPYLPELIEEFHKRGFTTFLVTNGTR 169 (322)
T ss_pred cccchhhHHHHHHHHHHcCCCEEEECCCCC
Confidence 356789999999999999999999999954
No 235
>COG0647 NagD Predicted sugar phosphatases of the HAD superfamily [Carbohydrate transport and metabolism]
Probab=71.03 E-value=5.1 Score=31.45 Aligned_cols=30 Identities=20% Similarity=0.190 Sum_probs=24.3
Q ss_pred HHHHHHHHHHcCC--ceEEEEeCCc-cchhhhc
Q 029504 161 AAAVQQIRKAHAY--KVLAMIGDGA-TDLEVSI 190 (192)
Q Consensus 161 ~~~l~~~~~~~g~--~~~~~iGDs~-~Di~~a~ 190 (192)
..+.+..++.++. +++++|||+. +|+.+++
T Consensus 193 ~~i~~~al~~~~~~~~~~~mVGD~~~TDI~~a~ 225 (269)
T COG0647 193 PAIYEAALEKLGLDRSEVLMVGDRLDTDILGAK 225 (269)
T ss_pred HHHHHHHHHHhCCCcccEEEEcCCchhhHHHHH
Confidence 4567777777776 7999999996 7998875
No 236
>TIGR01658 EYA-cons_domain eyes absent protein conserved domain. This domain is common to all eyes absent (EYA) homologs. Metazoan EYA's also contain a variable N-terminal domain consisting largely of low-complexity sequences.
Probab=69.41 E-value=31 Score=26.81 Aligned_cols=33 Identities=21% Similarity=0.271 Sum_probs=27.0
Q ss_pred CCHHHHHHHHHHHcCC--ceEEEEeCCccchhhhc
Q 029504 158 GGKAAAVQQIRKAHAY--KVLAMIGDGATDLEVSI 190 (192)
Q Consensus 158 ~~K~~~l~~~~~~~g~--~~~~~iGDs~~Di~~a~ 190 (192)
.+|....+.+.+++|- ..-++||||.---.+|+
T Consensus 213 vGK~~cFe~I~~Rfg~p~~~f~~IGDG~eEe~aAk 247 (274)
T TIGR01658 213 VGKLQCFKWIKERFGHPKVRFCAIGDGWEECTAAQ 247 (274)
T ss_pred cchHHHHHHHHHHhCCCCceEEEeCCChhHHHHHH
Confidence 4899999999999985 67899999986655554
No 237
>KOG2469 consensus IMP-GMP specific 5'-nucleotidase [Nucleotide transport and metabolism]
Probab=67.83 E-value=31 Score=28.75 Aligned_cols=91 Identities=18% Similarity=0.104 Sum_probs=54.8
Q ss_pred hHHHHHHHHHHCCCcEEEEcCCcHHhHHHHHH-HcCCCCCcEEecceeEec-----------------CCe-----eeec
Q 029504 92 GIDELVKKLKANNKNVYLISGGFRHMINPIAS-VLGIPPENIFANQLLFKS-----------------SGE-----FLGF 148 (192)
Q Consensus 92 ~~~e~l~~l~~~g~~~~IvS~~~~~~~~~~l~-~~g~~~~~~~~~~~~~~~-----------------~g~-----~~~~ 148 (192)
-+...+..++..|-++.++|++.-.+....+. .+|.+=.++|.-++.... .|. .+++
T Consensus 202 ~~v~~l~~~r~sGKk~fl~Tns~~~ytd~~mt~~~~~dW~~yfd~v~~~a~Kp~ff~e~~vlreV~t~~g~l~~g~~~~p 281 (424)
T KOG2469|consen 202 TIVPLLSMLRDSGKKTFLHTNSDWDYTDIFMAFHYGFDWETYFDLVETRAAKPGFFHEGTVLREVEPQEGLLKNGDNTGP 281 (424)
T ss_pred ccccchHHHHhhccceEEeeccccchhhHHHHHHhCCCcceeEEEEEEeccCCccccccceeeeeccccccccccccCCc
Confidence 34458999999999999999999888888886 455332256554443310 111 1111
Q ss_pred cCCCCCcCCCCHHHHHHHHHHHcCCceEEEEeCCcc
Q 029504 149 DANEPTSRSGGKAAAVQQIRKAHAYKVLAMIGDGAT 184 (192)
Q Consensus 149 ~~~~~~~~~~~K~~~l~~~~~~~g~~~~~~iGDs~~ 184 (192)
......+++ +....+.......| .+++|+||...
T Consensus 282 ~e~~~~ySg-gs~~~~~~~l~~~g-~diLy~gdHi~ 315 (424)
T KOG2469|consen 282 LEQGGVYSG-GSLKTVETSMKVKG-KDILYGGDHIW 315 (424)
T ss_pred chhcccCCc-chHHHHHHHhcccc-cceeeccccee
Confidence 111112222 45555666555555 58999999864
No 238
>KOG0541 consensus Alkyl hydroperoxide reductase/peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=67.20 E-value=27 Score=25.06 Aligned_cols=55 Identities=22% Similarity=0.253 Sum_probs=39.8
Q ss_pred CChhHHHHHHHHHHCCCcEE-EEcCCcHHhHHHHHHHcCCCCCcEEecceeEecCCeeee
Q 029504 89 LSPGIDELVKKLKANNKNVY-LISGGFRHMINPIASVLGIPPENIFANQLLFKSSGEFLG 147 (192)
Q Consensus 89 ~~~~~~e~l~~l~~~g~~~~-IvS~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~g~~~~ 147 (192)
-.||..+-.+.|+++|+..+ .+|-++.+.++...+.+|... - ..+..+.+|+|+.
T Consensus 63 HvPGyi~~a~elksKGVd~iicvSVnDpFv~~aW~k~~g~~~--~--V~f~aD~~g~ftk 118 (171)
T KOG0541|consen 63 HVPGYIEKADELKSKGVDEIICVSVNDPFVMKAWAKSLGAND--H--VKFVADPAGEFTK 118 (171)
T ss_pred cCchHHHHHHHHHhcCCcEEEEEecCcHHHHHHHHhhcCccc--e--EEEEecCCCceee
Confidence 46899999999999999865 557888888899999887752 1 1233344566643
No 239
>KOG2882 consensus p-Nitrophenyl phosphatase [Inorganic ion transport and metabolism]
Probab=67.14 E-value=8.6 Score=30.57 Aligned_cols=30 Identities=13% Similarity=0.168 Sum_probs=23.8
Q ss_pred HHHHHHHHHHcCC--ceEEEEeCCcc-chhhhc
Q 029504 161 AAAVQQIRKAHAY--KVLAMIGDGAT-DLEVSI 190 (192)
Q Consensus 161 ~~~l~~~~~~~g~--~~~~~iGDs~~-Di~~a~ 190 (192)
..+...+.+++++ +++++|||+.+ ||.-++
T Consensus 227 ~~m~~~l~~~~~i~psRt~mvGDRL~TDIlFG~ 259 (306)
T KOG2882|consen 227 TFMFEYLLEKFNIDPSRTCMVGDRLDTDILFGK 259 (306)
T ss_pred HHHHHHHHHHcCCCcceEEEEcccchhhhhHhh
Confidence 4567788888887 99999999974 886553
No 240
>TIGR03556 photolyase_8HDF deoxyribodipyrimidine photo-lyase, 8-HDF type. This model describes a narrow clade of cyanobacterial deoxyribodipyrimidine photo-lyase. This group, in contrast to several closely related proteins, uses a chromophore that, in other lineages is modified further to become coenzyme F420. This chromophore is called 8-HDF in most articles on the DNA photolyase and FO in most literature on coenzyme F420.
Probab=66.64 E-value=27 Score=29.72 Aligned_cols=46 Identities=20% Similarity=0.362 Sum_probs=39.6
Q ss_pred CChhHHHHHHHHHHCCCcEEEEcCCcHHhHHHHHHHcCCCCCcEEecc
Q 029504 89 LSPGIDELVKKLKANNKNVYLISGGFRHMINPIASVLGIPPENIFANQ 136 (192)
Q Consensus 89 ~~~~~~e~l~~l~~~g~~~~IvS~~~~~~~~~~l~~~g~~~~~~~~~~ 136 (192)
+.+++.++=+.|++.|.++.+..+.+...+..+++.+++. .++.+.
T Consensus 53 l~esL~~L~~~L~~~G~~L~v~~G~p~~vl~~l~~~~~~~--~V~~~~ 98 (471)
T TIGR03556 53 LIGCLQELQQRYQQAGSQLLILQGDPVQLIPQLAQQLGAK--AVYWNL 98 (471)
T ss_pred HHHHHHHHHHHHHHCCCCeEEEECCHHHHHHHHHHHcCCC--EEEEec
Confidence 4577788888999999999999999999999999999988 777653
No 241
>PF04123 DUF373: Domain of unknown function (DUF373); InterPro: IPR007254 This archaeal family of unknown function is predicted to be an integral membrane protein with six transmembrane regions.
Probab=66.38 E-value=30 Score=28.24 Aligned_cols=28 Identities=18% Similarity=0.253 Sum_probs=20.4
Q ss_pred HHHHHHHHHcCCceEEEEeCCccchhhh
Q 029504 162 AAVQQIRKAHAYKVLAMIGDGATDLEVS 189 (192)
Q Consensus 162 ~~l~~~~~~~g~~~~~~iGDs~~Di~~a 189 (192)
+-++++.++++.+.++.+.||..|-...
T Consensus 88 ~qld~vl~~~~~~~~i~VsDGaeDE~vl 115 (344)
T PF04123_consen 88 EQLDEVLSKFDPDSAIVVSDGAEDERVL 115 (344)
T ss_pred HHHHHHHHhCCCCEEEEEecChhhhhhh
Confidence 4466677777778888888888885543
No 242
>PRK10076 pyruvate formate lyase II activase; Provisional
Probab=65.91 E-value=14 Score=27.90 Aligned_cols=38 Identities=11% Similarity=0.194 Sum_probs=28.5
Q ss_pred CCCChh-HHHHHHHHHHCCCcEEEEcCCc--HHhHHHHHHH
Q 029504 87 PRLSPG-IDELVKKLKANNKNVYLISGGF--RHMINPIASV 124 (192)
Q Consensus 87 ~~~~~~-~~e~l~~l~~~g~~~~IvS~~~--~~~~~~~l~~ 124 (192)
+.++++ +.++++.+++.|+.++|.|++. ....+.++..
T Consensus 49 Pllq~~fl~~l~~~~k~~gi~~~leTnG~~~~~~~~~l~~~ 89 (213)
T PRK10076 49 VLMQAEFATRFLQRLRLWGVSCAIETAGDAPASKLLPLAKL 89 (213)
T ss_pred HHcCHHHHHHHHHHHHHcCCCEEEECCCCCCHHHHHHHHHh
Confidence 346677 5899999999999999999994 3444555443
No 243
>KOG0323 consensus TFIIF-interacting CTD phosphatases, including NLI-interacting factor [Transcription]
Probab=65.26 E-value=32 Score=30.50 Aligned_cols=50 Identities=18% Similarity=0.289 Sum_probs=41.0
Q ss_pred CCCChhHHHHHHHHHHCCCcEEEEcCCcHHhHHHHHHHcCCCCCcEEeccee
Q 029504 87 PRLSPGIDELVKKLKANNKNVYLISGGFRHMINPIASVLGIPPENIFANQLL 138 (192)
Q Consensus 87 ~~~~~~~~e~l~~l~~~g~~~~IvS~~~~~~~~~~l~~~g~~~~~~~~~~~~ 138 (192)
..++|+..+||+++.+ =+.++|.|=+.+.|+..+++-++-.. .+|+..+.
T Consensus 200 vKlRP~~~efL~~~sk-lfemhVyTmg~R~YA~~i~~liDP~~-~lF~dRIi 249 (635)
T KOG0323|consen 200 VKLRPFVHEFLKEANK-LFEMHVYTMGTRDYALEIAKLIDPEG-KYFGDRII 249 (635)
T ss_pred EEeCccHHHHHHHHHh-hceeEEEeccchHHHHHHHHHhCCCC-ccccceEE
Confidence 4689999999999984 48999999999999999999766554 56665543
No 244
>COG4502 5'(3')-deoxyribonucleotidase [Nucleotide transport and metabolism]
Probab=63.49 E-value=20 Score=25.34 Aligned_cols=45 Identities=16% Similarity=0.257 Sum_probs=31.3
Q ss_pred HHHhCCCCCChhHHHHHHHHHHCCCcEEEEcCCcH------HhHHHHHHHcCCC
Q 029504 81 FLEKRPPRLSPGIDELVKKLKANNKNVYLISGGFR------HMINPIASVLGIP 128 (192)
Q Consensus 81 ~~~~~~~~~~~~~~e~l~~l~~~g~~~~IvS~~~~------~~~~~~l~~~g~~ 128 (192)
+++.. ...|++.++++.|.+. +.++|+|+... .-.+-+.+.+.+-
T Consensus 63 fFRnL--~V~p~aq~v~keLt~~-y~vYivtaamdhp~s~~dK~eWl~E~FPFi 113 (180)
T COG4502 63 FFRNL--GVQPFAQTVLKELTSI-YNVYIVTAAMDHPKSCEDKGEWLKEKFPFI 113 (180)
T ss_pred hhhhc--CccccHHHHHHHHHhh-heEEEEEeccCCchhHHHHHHHHHHHCCCC
Confidence 55554 4779999999998855 89999997732 2345566666653
No 245
>COG5610 Predicted hydrolase (HAD superfamily) [General function prediction only]
Probab=62.79 E-value=46 Score=28.43 Aligned_cols=88 Identities=22% Similarity=0.175 Sum_probs=58.1
Q ss_pred CChhHHHHHHHHHHCCCcEEEEcCC--cHHhHHHHHHHcCCCCCcEEecceeEecCCeeeeccCCCCCcCCCCHHHHHHH
Q 029504 89 LSPGIDELVKKLKANNKNVYLISGG--FRHMINPIASVLGIPPENIFANQLLFKSSGEFLGFDANEPTSRSGGKAAAVQQ 166 (192)
Q Consensus 89 ~~~~~~e~l~~l~~~g~~~~IvS~~--~~~~~~~~l~~~g~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~K~~~l~~ 166 (192)
+.....++.+.+.++|.+++++|.= +...++.++..+|.+. .+..... ++++- ....+ +.....
T Consensus 100 pn~~~~eL~e~ai~n~krVIlISDMYlps~Il~~~L~s~g~d~----~nipiY~-S~e~r--------l~KnS-g~LFk~ 165 (635)
T COG5610 100 PNKKNIELVEEAIKNEKRVILISDMYLPSSILRTFLNSFGPDF----NNIPIYM-SSEFR--------LKKNS-GNLFKA 165 (635)
T ss_pred ccccchHHHHHHHhCCCeEEEEecccCcHHHHHHHHHhcCCCc----cCceeee-cceee--------hhccc-chHHHH
Confidence 4455678999999999999999965 6778899999999873 3332221 12111 11111 355666
Q ss_pred HHHHcCC--ceEEEEeCCc-cchhhhc
Q 029504 167 IRKAHAY--KVLAMIGDGA-TDLEVSI 190 (192)
Q Consensus 167 ~~~~~g~--~~~~~iGDs~-~Di~~a~ 190 (192)
+++.-++ ...+-+||.. .|..+++
T Consensus 166 Vlk~EnVd~~~w~H~GDN~~aD~l~pk 192 (635)
T COG5610 166 VLKLENVDPKKWIHCGDNWVADYLKPK 192 (635)
T ss_pred HHhhcCCChhheEEecCchhhhhcCcc
Confidence 6666565 7899999985 5766654
No 246
>TIGR02765 crypto_DASH cryptochrome, DASH family. Photolyases and cryptochromes are related flavoproteins. Photolyases harness the energy of blue light to repair DNA damage by removing pyrimidine dimers. Cryptochromes do not repair DNA and are presumed to act instead in some other (possibly unknown) process such as entraining circadian rhythms. This model describes the cryptochrome DASH subfamily, one of at least five major subfamilies, which is found in plants, animals, marine bacteria, etc. Members of this family bind both folate and FAD. They may show weak photolyase activity in vitro but have not been shown to affect DNA repair in vivo. Rather, DASH family cryptochromes have been shown to bind RNA (Vibrio cholerae VC1814), or DNA, and seem likely to act in light-responsive regulatory processes.
Probab=62.00 E-value=17 Score=30.37 Aligned_cols=45 Identities=18% Similarity=0.361 Sum_probs=35.4
Q ss_pred CChhHHHHHHHHHHCCCcEEEEcCCcHHhHHHHHHHcCCCCCcEEec
Q 029504 89 LSPGIDELVKKLKANNKNVYLISGGFRHMINPIASVLGIPPENIFAN 135 (192)
Q Consensus 89 ~~~~~~e~l~~l~~~g~~~~IvS~~~~~~~~~~l~~~g~~~~~~~~~ 135 (192)
+.+++.++=+.|++.|.+++|..+.+...+..+++.+++. .++.+
T Consensus 59 l~esL~~L~~~L~~~g~~L~v~~G~~~~vl~~L~~~~~~~--~V~~~ 103 (429)
T TIGR02765 59 LLESLKDLRTSLRKLGSDLLVRSGKPEDVLPELIKELGVR--TVFLH 103 (429)
T ss_pred HHHHHHHHHHHHHHcCCCeEEEeCCHHHHHHHHHHHhCCC--EEEEe
Confidence 4466777777888889999888888888888888888877 66655
No 247
>TIGR03365 Bsubt_queE 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE. This uncharacterized enzyme, designated QueE, participates in the biosynthesis, from GTP, of 7-cyano-7-deazaguanosine, also called preQ0 because in many species it is a precursor of queuosine. In most Archaea, it is instead the precursor of a different tRNA modified base, archaeosine.
Probab=61.96 E-value=9 Score=29.35 Aligned_cols=30 Identities=27% Similarity=0.249 Sum_probs=26.3
Q ss_pred CCCChhHHHHHHHHHHCCCcEEEEcCCcHH
Q 029504 87 PRLSPGIDELVKKLKANNKNVYLISGGFRH 116 (192)
Q Consensus 87 ~~~~~~~~e~l~~l~~~g~~~~IvS~~~~~ 116 (192)
+.+++++.++++.+++.|+++.|.||+...
T Consensus 83 Pll~~~l~~li~~l~~~g~~v~leTNGtl~ 112 (238)
T TIGR03365 83 PALQKPLGELIDLGKAKGYRFALETQGSVW 112 (238)
T ss_pred hhhhHhHHHHHHHHHHCCCCEEEECCCCCc
Confidence 456789999999999999999999999753
No 248
>smart00577 CPDc catalytic domain of ctd-like phosphatases.
Probab=61.17 E-value=3.6 Score=28.93 Aligned_cols=15 Identities=7% Similarity=-0.057 Sum_probs=13.3
Q ss_pred CCcEEecCCCcccchhHh
Q 029504 20 GLPGCLASLFIENNSCLI 37 (192)
Q Consensus 20 ~k~iifD~~~~DGTL~~~ 37 (192)
.+.+++| +||||++.
T Consensus 2 k~~lvld---ld~tl~~~ 16 (148)
T smart00577 2 KKTLVLD---LDETLVHS 16 (148)
T ss_pred CcEEEEe---CCCCeECC
Confidence 5789999 99999986
No 249
>TIGR02766 crypt_chrom_pln cryptochrome, plant family. At least five major families of cryptochomes and photolyases share FAD cofactor binding, sequence homology, and the ability to react to short wavelengths of visible light. Photolysases are responsible for light-dependent DNA repair by removal of two types of uv-induced DNA dimerizations. Cryptochromes have other functions, often regulatory and often largely unknown, which may include circadian clock entrainment and control of development. Members of this subfamily are known so far only in plants; they may show some photolyase activity in vitro but appear mostly to be regulatory proteins that respond to blue light.
Probab=60.16 E-value=40 Score=28.66 Aligned_cols=68 Identities=16% Similarity=0.165 Sum_probs=48.3
Q ss_pred CChhHHHHHHHHHHCCCcEEEE-cCCcHHhHHHHHHHcCCCCCcEEecceeEecCCeeeeccCCCCCcCCCCHHHHHHHH
Q 029504 89 LSPGIDELVKKLKANNKNVYLI-SGGFRHMINPIASVLGIPPENIFANQLLFKSSGEFLGFDANEPTSRSGGKAAAVQQI 167 (192)
Q Consensus 89 ~~~~~~e~l~~l~~~g~~~~Iv-S~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~K~~~l~~~ 167 (192)
+...+.++=+.|++.|.+++++ .+.....+..+++..++. .++.+.- . . +.....-..++++
T Consensus 49 l~~sL~~L~~~L~~~G~~L~v~~~g~~~~~l~~l~~~~~i~--~v~~~~~-~------~--------~~~~~rd~~v~~~ 111 (475)
T TIGR02766 49 LKQSLAHLDQSLRSLGTCLVTIRSTDTVAALLDCVRSTGAT--RLFFNHL-Y------D--------PVSLVRDHRAKEV 111 (475)
T ss_pred HHHHHHHHHHHHHHcCCceEEEeCCCHHHHHHHHHHHcCCC--EEEEecc-c------C--------HHHHHHHHHHHHH
Confidence 3466777778889999999988 567888999999999988 7777542 0 0 0011234667778
Q ss_pred HHHcCC
Q 029504 168 RKAHAY 173 (192)
Q Consensus 168 ~~~~g~ 173 (192)
+++.|+
T Consensus 112 l~~~gi 117 (475)
T TIGR02766 112 LTAQGI 117 (475)
T ss_pred HHHcCC
Confidence 877777
No 250
>PF08444 Gly_acyl_tr_C: Aralkyl acyl-CoA:amino acid N-acyltransferase, C-terminal region; InterPro: IPR013652 This entry represents mammalian-specific glycine N-acyltransferase (also called aralkyl acyl-CoA:amino acid N-acyltransferase; 2.3.1.13 from EC). Mitochondrial acyltransferases catalyse the transfer of an acyl group from acyl-CoA to the N terminus of glycine to produce N-acylglycine. These enzymes can conjugate a multitude of substrates to form a variety of N-acylglycines. The CoA derivatives of a number of aliphatic and aromatic acids, but not phenylacetyl-CoA or (indol-3-yl)acetyl-CoA, can act as donor [, ].
Probab=59.41 E-value=23 Score=22.77 Aligned_cols=36 Identities=14% Similarity=0.059 Sum_probs=31.2
Q ss_pred HHHHHHHHHHCCCcEEEEcCCcHHhHHHHHHHcCCC
Q 029504 93 IDELVKKLKANNKNVYLISGGFRHMINPIASVLGIP 128 (192)
Q Consensus 93 ~~e~l~~l~~~g~~~~IvS~~~~~~~~~~l~~~g~~ 128 (192)
+...+++|+++|++++.-.......+.+.++.+|+.
T Consensus 41 ~~~~~~~L~~~g~P~Y~hv~~~N~~~~r~~~~lg~~ 76 (89)
T PF08444_consen 41 MYHLAQYLHKLGFPFYGHVDEDNEASQRLSKSLGFI 76 (89)
T ss_pred HHHHHHHHHHCCCCeEeehHhccHHHHHHHHHCCCe
Confidence 445688999999999999988888999999988875
No 251
>TIGR01456 CECR5 HAD-superfamily class IIA hydrolase, TIGR01456, CECR5. The Schizosaccharomyces pombe sequence (EGAD|138276) is annotated as "phosphatidyl synthase," however this is due entirely to a C-terminal region of the protein (outside the region of similarity of this model) which is highly homologous to a family of CDP-alcohol phosphatidyltransferases. (Thus, the annotation of GP|4226073 from C. elegans as similar to phosphatidyl synthase, is a mistake as this gene does not contain the C-terminal portion). The physical connection of the phosphatidyl synthase and the HAD-superfamily hydrolase domain in S. pombe may, however, be an important clue to the substrate for the hydrolases in this equivalog.
Probab=59.41 E-value=5.1 Score=32.17 Aligned_cols=13 Identities=8% Similarity=-0.235 Sum_probs=11.6
Q ss_pred cEEecCCCcccchhHh
Q 029504 22 PGCLASLFIENNSCLI 37 (192)
Q Consensus 22 ~iifD~~~~DGTL~~~ 37 (192)
+++|| +||||++.
T Consensus 2 ~~ifD---~DGvL~~g 14 (321)
T TIGR01456 2 GFAFD---IDGVLFRG 14 (321)
T ss_pred EEEEe---CcCceECC
Confidence 58999 99999985
No 252
>COG0678 AHP1 Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=58.10 E-value=33 Score=24.50 Aligned_cols=40 Identities=28% Similarity=0.324 Sum_probs=35.1
Q ss_pred CChhHHHHHHHHHHCCCc-EEEEcCCcHHhHHHHHHHcCCC
Q 029504 89 LSPGIDELVKKLKANNKN-VYLISGGFRHMINPIASVLGIP 128 (192)
Q Consensus 89 ~~~~~~e~l~~l~~~g~~-~~IvS~~~~~~~~~~l~~~g~~ 128 (192)
-.||..+..+.++++|+. ++++|=++.+.+++..+..|..
T Consensus 57 hlPgY~~~~d~f~~kGVD~I~cVSVND~FVm~AWak~~g~~ 97 (165)
T COG0678 57 HLPGYLELADEFKAKGVDEIYCVSVNDAFVMNAWAKSQGGE 97 (165)
T ss_pred cCccHHHHHHHHHHcCCceEEEEEeCcHHHHHHHHHhcCCC
Confidence 458999999999999987 6778888899999999998887
No 253
>PF06189 5-nucleotidase: 5'-nucleotidase; InterPro: IPR010394 This family consists of both eukaryotic and prokaryotic 5'-nucleotidase sequences (3.1.3.5 from EC).; GO: 0000166 nucleotide binding, 0000287 magnesium ion binding, 0008253 5'-nucleotidase activity, 0009117 nucleotide metabolic process, 0005737 cytoplasm
Probab=57.97 E-value=65 Score=25.21 Aligned_cols=41 Identities=10% Similarity=0.037 Sum_probs=24.4
Q ss_pred CChhHHHHHHHHHHC------CCcEEEEcCCcHHhHHHH---HHHcCCCC
Q 029504 89 LSPGIDELVKKLKAN------NKNVYLISGGFRHMINPI---ASVLGIPP 129 (192)
Q Consensus 89 ~~~~~~e~l~~l~~~------g~~~~IvS~~~~~~~~~~---l~~~g~~~ 129 (192)
|.....+.|.+++++ -+.++|||+.....-++. |+.+|+..
T Consensus 165 P~~~fl~~L~~lQ~~~~~~~~piRtalVTAR~apah~RvI~TLr~Wgv~v 214 (264)
T PF06189_consen 165 PFKDFLKKLSKLQKKFPPENSPIRTALVTARSAPAHERVIRTLRSWGVRV 214 (264)
T ss_pred CHHHHHHHHHHHHHhcCCCCCceEEEEEEcCCCchhHHHHHHHHHcCCcH
Confidence 444555555555553 467899997765443443 45677763
No 254
>TIGR03470 HpnH hopanoid biosynthesis associated radical SAM protein HpnH. The sequences represented by this model are members of the radical SAM superfamily of enzymes (pfam04055). These enzymes utilize an iron-sulfur redox cluster and S-adenosylmethionine to carry out diverse radical mediated reactions. The members of this clade are frequently found in the same locus as squalene-hopene cyclase (SHC, TIGR01507) and other genes associated with the biosynthesis of hopanoid natural products. The linkage between SHC and this radical SAM enzyme is strong; one is nearly always observed in the same genome where the other is found. A hopanoid biosynthesis locus was described in Zymomonas mobilis consisting of the genes HpnA-E and SHC (HpnF). Continuing past SHC are found a phosphorylase enzyme (ZMO0873, i.e. HpnG, TIGR03468) and this radical SAM enzyme (ZMO0874) which we name here HpnH. Granted, in Z. mobilis, HpnH is in a convergent orientation with respect to HpnA-G, but one gene beyond HpnH
Probab=57.17 E-value=13 Score=29.83 Aligned_cols=30 Identities=43% Similarity=0.643 Sum_probs=26.7
Q ss_pred CCCCChhHHHHHHHHHHCCCcEEEEcCCcH
Q 029504 86 PPRLSPGIDELVKKLKANNKNVYLISGGFR 115 (192)
Q Consensus 86 ~~~~~~~~~e~l~~l~~~g~~~~IvS~~~~ 115 (192)
.+.++|++.++++.++++|..+.|+||+..
T Consensus 82 EPLL~pdl~eiv~~~~~~g~~v~l~TNG~l 111 (318)
T TIGR03470 82 EPLLHPEIDEIVRGLVARKKFVYLCTNALL 111 (318)
T ss_pred cccccccHHHHHHHHHHcCCeEEEecCcee
Confidence 357889999999999999999999999964
No 255
>PF06437 ISN1: IMP-specific 5'-nucleotidase; InterPro: IPR009453 The Saccharomyces cerevisiae ISN1 (YOR155c) gene encodes an IMP-specific 5'-nucleotidase, which catalyses degradation of IMP to inosine as part of the purine salvage pathway.; GO: 0000287 magnesium ion binding, 0016791 phosphatase activity, 0009117 nucleotide metabolic process
Probab=56.51 E-value=24 Score=29.18 Aligned_cols=16 Identities=0% Similarity=-0.479 Sum_probs=14.2
Q ss_pred cCCcEEecCCCcccchhHh
Q 029504 19 NGLPGCLASLFIENNSCLI 37 (192)
Q Consensus 19 ~~k~iifD~~~~DGTL~~~ 37 (192)
..|+|-|| =|+||++.
T Consensus 146 ~L~LvTFD---gDvTLY~D 161 (408)
T PF06437_consen 146 GLKLVTFD---GDVTLYED 161 (408)
T ss_pred CceEEEEc---CCcccccC
Confidence 56899999 99999885
No 256
>TIGR02251 HIF-SF_euk Dullard-like phosphatase domain. This domain is related to domains found in FCP1-like phosphatases (TIGR02250), and together both are detected by the Pfam model pfam03031.
Probab=55.80 E-value=5.3 Score=28.63 Aligned_cols=15 Identities=7% Similarity=-0.057 Sum_probs=13.1
Q ss_pred CCcEEecCCCcccchhHh
Q 029504 20 GLPGCLASLFIENNSCLI 37 (192)
Q Consensus 20 ~k~iifD~~~~DGTL~~~ 37 (192)
++.+++| +|+||+.+
T Consensus 1 k~~lvlD---LDeTLi~~ 15 (162)
T TIGR02251 1 KKTLVLD---LDETLVHS 15 (162)
T ss_pred CcEEEEc---CCCCcCCC
Confidence 3679999 99999986
No 257
>cd05014 SIS_Kpsf KpsF-like protein. KpsF is an arabinose-5-phosphate isomerase which contains SIS (Sugar ISomerase) domains. SIS domains are found in many phosphosugar isomerases and phosphosugar binding proteins. KpsF catalyzes the reversible reaction of ribulose 5-phosphate to arabinose 5-phosphate. This is the second step in the CMP-Kdo biosynthesis pathway.
Probab=55.47 E-value=13 Score=24.99 Aligned_cols=33 Identities=15% Similarity=0.232 Sum_probs=27.0
Q ss_pred CChhHHHHHHHHHHCCCcEEEEcCCcHHhHHHH
Q 029504 89 LSPGIDELVKKLKANNKNVYLISGGFRHMINPI 121 (192)
Q Consensus 89 ~~~~~~e~l~~l~~~g~~~~IvS~~~~~~~~~~ 121 (192)
-.+.+.+.++.++++|.+++.+|+.....+...
T Consensus 59 ~t~~~~~~~~~a~~~g~~vi~iT~~~~s~la~~ 91 (128)
T cd05014 59 ETDELLNLLPHLKRRGAPIIAITGNPNSTLAKL 91 (128)
T ss_pred CCHHHHHHHHHHHHCCCeEEEEeCCCCCchhhh
Confidence 457899999999999999999998876555443
No 258
>TIGR02826 RNR_activ_nrdG3 anaerobic ribonucleoside-triphosphate reductase activating protein. Members of this family represent a set of proteins related to, yet architecturally different from, the activating protein for the glycine radical-containing, oxygen-sensitive ribonucleoside-triphosphate reductase (RNR) as described in model TIGR02491. Members of this family are found paired with members of a similarly divergent set of anaerobic ribonucleoside-triphosphate reductases. Identification of this protein as an RNR activitating protein is partly from pairing with a candidate RNR. It is further supported by our finding that upstream of these operons are examples of a conserved regulatory element (described Rodionov and Gelfand) that is found in nearly all bacteria and that occurs specifically upstream of operons for all three classes of RNR genes.
Probab=55.40 E-value=38 Score=23.92 Aligned_cols=36 Identities=14% Similarity=0.071 Sum_probs=26.7
Q ss_pred CChhHHHHHHHHHHCCCcEEEEcCCcH-HhHHHHHHH
Q 029504 89 LSPGIDELVKKLKANNKNVYLISGGFR-HMINPIASV 124 (192)
Q Consensus 89 ~~~~~~e~l~~l~~~g~~~~IvS~~~~-~~~~~~l~~ 124 (192)
..+.+.++++.+++.|+++.|.|+... +..+.++..
T Consensus 73 ~~~~l~~ll~~lk~~Gl~i~l~Tg~~~~~~~~~il~~ 109 (147)
T TIGR02826 73 NREALLSLLKIFKEKGLKTCLYTGLEPKDIPLELVQH 109 (147)
T ss_pred CHHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHh
Confidence 347799999999999999999998643 233444443
No 259
>PF13911 AhpC-TSA_2: AhpC/TSA antioxidant enzyme
Probab=55.29 E-value=46 Score=21.93 Aligned_cols=36 Identities=19% Similarity=0.242 Sum_probs=28.6
Q ss_pred HHHHHHHHCCCcEEEEcCCcHHhHHHHHHHcCCCCC
Q 029504 95 ELVKKLKANNKNVYLISGGFRHMINPIASVLGIPPE 130 (192)
Q Consensus 95 e~l~~l~~~g~~~~IvS~~~~~~~~~~l~~~g~~~~ 130 (192)
+....+++.|+++++|+-+...-++.+.+..+++.+
T Consensus 4 ~~~~~l~~~gv~lv~I~~g~~~~~~~f~~~~~~p~~ 39 (115)
T PF13911_consen 4 RRKPELEAAGVKLVVIGCGSPEGIEKFCELTGFPFP 39 (115)
T ss_pred HhHHHHHHcCCeEEEEEcCCHHHHHHHHhccCCCCc
Confidence 446778889999999997777558888888777753
No 260
>TIGR02495 NrdG2 anaerobic ribonucleoside-triphosphate reductase activating protein. This enzyme is a member of the radical-SAM family (pfam04055). It is often gene clustered with the class III (anaerobic) ribonucleotide triphosphate reductase (NrdD, TIGR02487) and presumably fulfills the identical function as NrdG which utilizes S-adenosyl methionine, an iron-sulfur cluster and a reductant (dihydroflavodoxin) to produce a glycine-centered radical in NrdD.
Probab=54.70 E-value=52 Score=23.86 Aligned_cols=29 Identities=24% Similarity=0.461 Sum_probs=25.4
Q ss_pred CCCChhHHHHHHHHHHCCCcEEEEcCCcH
Q 029504 87 PRLSPGIDELVKKLKANNKNVYLISGGFR 115 (192)
Q Consensus 87 ~~~~~~~~e~l~~l~~~g~~~~IvS~~~~ 115 (192)
+.+++.+.++++.+++.|+.+.|.|++..
T Consensus 73 Pll~~~l~~li~~~~~~g~~v~i~TNg~~ 101 (191)
T TIGR02495 73 PTLQAGLPDFLRKVRELGFEVKLDTNGSN 101 (191)
T ss_pred ccCcHhHHHHHHHHHHCCCeEEEEeCCCC
Confidence 46778899999999999999999998863
No 261
>cd05008 SIS_GlmS_GlmD_1 SIS (Sugar ISomerase) domain repeat 1 found in Glucosamine 6-phosphate synthase (GlmS) and Glucosamine-6-phosphate deaminase (GlmD). The SIS domain is found in many phosphosugar isomerases and phosphosugar binding proteins. GlmS contains a N-terminal glutaminase domain and two C-terminal SIS domains and catalyzes the first step in hexosamine metabolism, converting fructose 6-phosphate into glucosamine 6-phosphate using glutamine as nitrogen source. The glutaminase domain hydrolyzes glutamine to glutamate and ammonia. Ammonia is transferred through a channel to the isomerase domain for glucosamine 6-phosphate synthesis. The end product of the pathway is N-acetylglucosamine, which plays multiple roles in eukaryotic cells including being a building block of bacterial and fungal cell walls. In the absence of glutamine, GlmS catalyzes the isomerization of fructose 6-phosphate into glucose 6- phosphate (PGI-like activity). Glucosamine-6-phosphate deaminase (GlmD) cont
Probab=53.35 E-value=25 Score=23.49 Aligned_cols=32 Identities=6% Similarity=-0.003 Sum_probs=25.7
Q ss_pred CChhHHHHHHHHHHCCCcEEEEcCCcHHhHHH
Q 029504 89 LSPGIDELVKKLKANNKNVYLISGGFRHMINP 120 (192)
Q Consensus 89 ~~~~~~e~l~~l~~~g~~~~IvS~~~~~~~~~ 120 (192)
-.+.+.+.++.++++|.+++.+|+.+...+..
T Consensus 58 ~t~e~~~~~~~a~~~g~~vi~iT~~~~s~la~ 89 (126)
T cd05008 58 ETADTLAALRLAKEKGAKTVAITNVVGSTLAR 89 (126)
T ss_pred CCHHHHHHHHHHHHcCCeEEEEECCCCChHHH
Confidence 35678899999999999999999886654444
No 262
>PF00578 AhpC-TSA: AhpC/TSA family; InterPro: IPR000866 Peroxiredoxins (Prxs) are a ubiquitous family of antioxidant enzymes that also control cytokine-induced peroxide levels which mediate signal transduction in mammalian cells. Prxs can be regulated by changes to phosphorylation, redox and possibly oligomerisation states. Prxs are divided into three classes: typical 2-Cys Prxs; atypical 2-Cys Prxs; and 1-Cys Prxs. All Prxs share the same basic catalytic mechanism, in which an active-site cysteine (the peroxidatic cysteine) is oxidised to a sulphenic acid by the peroxide substrate. The recycling of the sulphenic acid back to a thiol is what distinguishes the three enzyme classes. Using crystal structures, a detailed catalytic cycle has been derived for typical 2-Cys Prxs, including a model for the redox-regulated oligomeric state proposed to control enzyme activity []. Alkyl hydroperoxide reductase (AhpC) is responsible for directly reducing organic hyperoxides in its reduced dithiol form. Thiol specific antioxidant (TSA) is a physiologically important antioxidant which constitutes an enzymatic defence against sulphur-containing radicals. This family contains AhpC and TSA, as well as related proteins.; GO: 0016209 antioxidant activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1QMV_A 1PRX_B 3HJP_C 3HA9_A 2V41_G 2V32_C 2V2G_C 3LWA_A 3IA1_B 1ZYE_G ....
Probab=53.17 E-value=37 Score=22.28 Aligned_cols=38 Identities=32% Similarity=0.387 Sum_probs=31.9
Q ss_pred hhHHHHHHHHHHCCCcEEEEcCCcHHhHHHHHHHcCCC
Q 029504 91 PGIDELVKKLKANNKNVYLISGGFRHMINPIASVLGIP 128 (192)
Q Consensus 91 ~~~~e~l~~l~~~g~~~~IvS~~~~~~~~~~l~~~g~~ 128 (192)
+.+.++.+.+++.|+.++.+|.+....++...+..+++
T Consensus 46 ~~l~~~~~~~~~~~~~vi~is~d~~~~~~~~~~~~~~~ 83 (124)
T PF00578_consen 46 PELNELYKKYKDKGVQVIGISTDDPEEIKQFLEEYGLP 83 (124)
T ss_dssp HHHHHHHHHHHTTTEEEEEEESSSHHHHHHHHHHHTCS
T ss_pred hHHHHHhhhhccceEEeeecccccccchhhhhhhhccc
Confidence 55667778888889999999999888889999888765
No 263
>TIGR02250 FCP1_euk FCP1-like phosphatase, phosphatase domain. This domain is related to domains found in the human NLI interacting factor-like phosphatases, and together both are detected by the Pfam model pfam03031.
Probab=51.14 E-value=7.2 Score=27.85 Aligned_cols=16 Identities=13% Similarity=0.063 Sum_probs=14.1
Q ss_pred cCCcEEecCCCcccchhHh
Q 029504 19 NGLPGCLASLFIENNSCLI 37 (192)
Q Consensus 19 ~~k~iifD~~~~DGTL~~~ 37 (192)
++..+++| +|.||+++
T Consensus 5 ~kl~LVLD---LDeTLihs 20 (156)
T TIGR02250 5 KKLHLVLD---LDQTLIHT 20 (156)
T ss_pred CceEEEEe---CCCCcccc
Confidence 56789999 99999997
No 264
>TIGR02109 PQQ_syn_pqqE coenzyme PQQ biosynthesis protein E. This model describes coenzyme PQQ biosynthesis protein E, a gene required for the biosynthesis of pyrrolo-quinoline-quinone (coenzyme PQQ). PQQ is required for some glucose dehydrogenases and alcohol dehydrogenases.
Probab=51.05 E-value=21 Score=29.02 Aligned_cols=42 Identities=24% Similarity=0.377 Sum_probs=31.0
Q ss_pred CCCCChhHHHHHHHHHHCCCcEEEEcCCcH---HhHHHHHHHcCCC
Q 029504 86 PPRLSPGIDELVKKLKANNKNVYLISGGFR---HMINPIASVLGIP 128 (192)
Q Consensus 86 ~~~~~~~~~e~l~~l~~~g~~~~IvS~~~~---~~~~~~l~~~g~~ 128 (192)
.+.++|++.++++.+++.|+.+.|.|++.. ..++.+.+ .|+.
T Consensus 63 EPll~~~~~~ii~~~~~~g~~~~l~TNG~ll~~e~~~~L~~-~g~~ 107 (358)
T TIGR02109 63 EPLARPDLVELVAHARRLGLYTNLITSGVGLTEARLDALAD-AGLD 107 (358)
T ss_pred cccccccHHHHHHHHHHcCCeEEEEeCCccCCHHHHHHHHh-CCCC
Confidence 356789999999999999999999999853 34444333 4553
No 265
>TIGR00591 phr2 photolyase PhrII. All proteins in this family for which functions are known are DNA-photolyases used for the direct repair of UV irradiation induced DNA damage. Some repair 6-4 photoproducts while others repair cyclobutane pyrimidine dimers. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=50.99 E-value=33 Score=28.94 Aligned_cols=45 Identities=11% Similarity=0.219 Sum_probs=33.0
Q ss_pred CChhHHHHHHHHHHCCCcEEEEcCCcHHhHHHHHHHcCCCCCcEEec
Q 029504 89 LSPGIDELVKKLKANNKNVYLISGGFRHMINPIASVLGIPPENIFAN 135 (192)
Q Consensus 89 ~~~~~~e~l~~l~~~g~~~~IvS~~~~~~~~~~l~~~g~~~~~~~~~ 135 (192)
+..++.++=+.|++.|.+++|..+.+...+..+++..++. .++.+
T Consensus 76 l~esL~~L~~~L~~~g~~L~v~~g~~~~~l~~l~~~~~i~--~V~~~ 120 (454)
T TIGR00591 76 MLGGLDEVANECERLIIPFHLLDGPPKELLPYFVDLHAAA--AVVTD 120 (454)
T ss_pred HHHHHHHHHHHHHHcCCceEEeecChHHHHHHHHHHcCCC--EEEEe
Confidence 3456667777788888888888888888887777777776 55554
No 266
>KOG2832 consensus TFIIF-interacting CTD phosphatase, including NLI-interacting factor (involved in RNA polymerase II regulation) [Transcription]
Probab=50.42 E-value=59 Score=26.80 Aligned_cols=46 Identities=17% Similarity=0.278 Sum_probs=37.5
Q ss_pred CChhHHHHHHHHHHCCCcEEEEcCCcHHhHHHHHHHcCCCCCcEEecce
Q 029504 89 LSPGIDELVKKLKANNKNVYLISGGFRHMINPIASVLGIPPENIFANQL 137 (192)
Q Consensus 89 ~~~~~~e~l~~l~~~g~~~~IvS~~~~~~~~~~l~~~g~~~~~~~~~~~ 137 (192)
-+||+.-++..+- ..+.++|.|+....++..+++.++-. .++...+
T Consensus 215 kRPgvD~FL~~~a-~~yEIVi~sse~gmt~~pl~d~lDP~--g~IsYkL 260 (393)
T KOG2832|consen 215 KRPGVDYFLGHLA-KYYEIVVYSSEQGMTVFPLLDALDPK--GYISYKL 260 (393)
T ss_pred cCchHHHHHHhhc-ccceEEEEecCCccchhhhHhhcCCc--ceEEEEE
Confidence 5799999999887 77999999999999999999987665 4444433
No 267
>cd05710 SIS_1 A subgroup of the SIS domain. SIS (Sugar ISomerase) domains are found in many phosphosugar isomerases and phosphosugar binding proteins. SIS domains are also found in proteins that regulate the expression of genes involved in synthesis of phosphosugars.
Probab=48.44 E-value=23 Score=23.74 Aligned_cols=32 Identities=9% Similarity=-0.064 Sum_probs=25.8
Q ss_pred CChhHHHHHHHHHHCCCcEEEEcCCcHHhHHH
Q 029504 89 LSPGIDELVKKLKANNKNVYLISGGFRHMINP 120 (192)
Q Consensus 89 ~~~~~~e~l~~l~~~g~~~~IvS~~~~~~~~~ 120 (192)
-.+.+.+.++.++++|.+++.+|+.....+..
T Consensus 59 ~t~~~~~~~~~a~~~g~~vi~iT~~~~s~la~ 90 (120)
T cd05710 59 NTKETVAAAKFAKEKGATVIGLTDDEDSPLAK 90 (120)
T ss_pred CChHHHHHHHHHHHcCCeEEEEECCCCCcHHH
Confidence 45788999999999999999999877654443
No 268
>COG0415 PhrB Deoxyribodipyrimidine photolyase [DNA replication, recombination, and repair]
Probab=48.12 E-value=1.3e+02 Score=25.70 Aligned_cols=44 Identities=16% Similarity=0.265 Sum_probs=37.6
Q ss_pred hhHHHHHHHHHHCCCcEEEEcCCcHHhHHHHHHHcCCCCCcEEecc
Q 029504 91 PGIDELVKKLKANNKNVYLISGGFRHMINPIASVLGIPPENIFANQ 136 (192)
Q Consensus 91 ~~~~e~l~~l~~~g~~~~IvS~~~~~~~~~~l~~~g~~~~~~~~~~ 136 (192)
.+..++=+.|++.|+++++.++.+...+..+++.+++. .++.+.
T Consensus 55 ~sL~~L~~~L~~~gi~L~v~~~~~~~~l~~~~~~~~~~--~v~~n~ 98 (461)
T COG0415 55 QSLQALQQSLAELGIPLLVREGDPEQVLPELAKQLAAT--TVFWNR 98 (461)
T ss_pred HHHHHHHHHHHHcCCceEEEeCCHHHHHHHHHHHhCcc--eEEeee
Confidence 45677778899999999999999999999999999876 666654
No 269
>PRK05301 pyrroloquinoline quinone biosynthesis protein PqqE; Provisional
Probab=47.86 E-value=27 Score=28.65 Aligned_cols=29 Identities=28% Similarity=0.409 Sum_probs=25.7
Q ss_pred CCCCChhHHHHHHHHHHCCCcEEEEcCCc
Q 029504 86 PPRLSPGIDELVKKLKANNKNVYLISGGF 114 (192)
Q Consensus 86 ~~~~~~~~~e~l~~l~~~g~~~~IvS~~~ 114 (192)
.+.++|++.++++++++.|+.+.|.|++.
T Consensus 72 EPll~~~~~~il~~~~~~g~~~~i~TNG~ 100 (378)
T PRK05301 72 EPLLRKDLEELVAHARELGLYTNLITSGV 100 (378)
T ss_pred ccCCchhHHHHHHHHHHcCCcEEEECCCc
Confidence 35678999999999999999999999985
No 270
>cd05017 SIS_PGI_PMI_1 The members of this protein family contain the SIS (Sugar ISomerase) domain and have both the phosphoglucose isomerase (PGI) and the phosphomannose isomerase (PMI) functions. These functions catalyze the reversible reactions of glucose 6-phosphate to fructose 6-phosphate, and mannose 6-phosphate to fructose 6-phosphate, respectively at an equal rate. This protein contains two SIS domains. This alignment is based on the first SIS domain.
Probab=47.59 E-value=63 Score=21.48 Aligned_cols=38 Identities=18% Similarity=0.257 Sum_probs=27.7
Q ss_pred CChhHHHHHHHHHHCCCcEEEEcCCcHHhHHHHHHHcCCC
Q 029504 89 LSPGIDELVKKLKANNKNVYLISGGFRHMINPIASVLGIP 128 (192)
Q Consensus 89 ~~~~~~e~l~~l~~~g~~~~IvS~~~~~~~~~~l~~~g~~ 128 (192)
-.+.+.+.++.++++|.+++.+|+... +....+..+..
T Consensus 55 ~t~e~i~~~~~a~~~g~~iI~IT~~~~--l~~~~~~~~~~ 92 (119)
T cd05017 55 NTEETLSAVEQAKERGAKIVAITSGGK--LLEMAREHGVP 92 (119)
T ss_pred CCHHHHHHHHHHHHCCCEEEEEeCCch--HHHHHHHcCCc
Confidence 457889999999999999999996542 44455544543
No 271
>TIGR02494 PFLE_PFLC glycyl-radical enzyme activating protein family. This subset of the radical-SAM family (pfam04055) includes a number of probable activating proteins acting on different enzymes all requiring an amino-acid-centered radical. The closest relatives to this family are the pyruvate-formate lyase activating enzyme (PflA, 1.97.1.4, TIGR02493) and the anaerobic ribonucleotide reductase activating enzyme (TIGR02491). Included within this subfamily are activators of hydroxyphenyl acetate decarboxylase (HdpA, ), benzylsuccinate synthase (BssD, ), gycerol dehydratase (DhaB2, ) as well as enzymes annotated in E. coli as activators of different isozymes of pyruvate-formate lyase (PFLC and PFLE) however, these appear to lack characterization and may activate enzymes with distinctive functions. Most of the sequence-level variability between these forms is concentrated within an N-terminal domain which follows a conserved group of three cysteines and contains a variable pattern of 0
Probab=47.54 E-value=42 Score=26.37 Aligned_cols=28 Identities=21% Similarity=0.377 Sum_probs=24.3
Q ss_pred CCCChhH-HHHHHHHHHCCCcEEEEcCCc
Q 029504 87 PRLSPGI-DELVKKLKANNKNVYLISGGF 114 (192)
Q Consensus 87 ~~~~~~~-~e~l~~l~~~g~~~~IvS~~~ 114 (192)
+.++++. .++++++++.|+.+.+.|++.
T Consensus 136 Pll~~~~l~~l~~~~k~~g~~~~i~TnG~ 164 (295)
T TIGR02494 136 PLLQPEFALALLQACHERGIHTAVETSGF 164 (295)
T ss_pred hhchHHHHHHHHHHHHHcCCcEeeeCCCC
Confidence 4577886 699999999999999999985
No 272
>KOG2134 consensus Polynucleotide kinase 3' phosphatase [Replication, recombination and repair]
Probab=46.54 E-value=8.3 Score=31.79 Aligned_cols=16 Identities=0% Similarity=-0.257 Sum_probs=14.4
Q ss_pred cCCcEEecCCCcccchhHh
Q 029504 19 NGLPGCLASLFIENNSCLI 37 (192)
Q Consensus 19 ~~k~iifD~~~~DGTL~~~ 37 (192)
+.|.+.|| +||||+++
T Consensus 74 ~~K~i~FD---~dgtlI~t 89 (422)
T KOG2134|consen 74 GSKIIMFD---YDGTLIDT 89 (422)
T ss_pred CcceEEEe---cCCceeec
Confidence 56999999 99999886
No 273
>KOG3040 consensus Predicted sugar phosphatase (HAD superfamily) [General function prediction only]
Probab=45.32 E-value=47 Score=25.27 Aligned_cols=41 Identities=20% Similarity=0.324 Sum_probs=29.7
Q ss_pred CChhHHHHHHHHHHCCCcEEEEcCCcHHh---HHHHHHHcCCCC
Q 029504 89 LSPGIDELVKKLKANNKNVYLISGGFRHM---INPIASVLGIPP 129 (192)
Q Consensus 89 ~~~~~~e~l~~l~~~g~~~~IvS~~~~~~---~~~~l~~~g~~~ 129 (192)
..||+.|.++.|+..+.++-.+|+..... +..-+.++|++.
T Consensus 24 avpga~eAl~rLr~~~~kVkFvTNttk~Sk~~l~~rL~rlgf~v 67 (262)
T KOG3040|consen 24 AVPGAVEALKRLRDQHVKVKFVTNTTKESKRNLHERLQRLGFDV 67 (262)
T ss_pred cCCCHHHHHHHHHhcCceEEEEecCcchhHHHHHHHHHHhCCCc
Confidence 66899999999999999998888775543 333344566654
No 274
>PF01380 SIS: SIS domain SIS domain web page.; InterPro: IPR001347 The SIS (Sugar ISomerase) domain is a phosphosugar-binding domain [] found in many phosphosugar isomerases and phosphosugar binding proteins. SIS domains are also found in proteins that regulate the expression of genes involved in synthesis of phosphosugars possibly by binding to the end-product of the pathway.; GO: 0005529 sugar binding, 0005975 carbohydrate metabolic process; PDB: 3TBF_C 2V4M_A 2ZJ4_A 2ZJ3_A 3FKJ_A 3ODP_A 3EUA_H 1VIV_A 1M3S_B 1TZB_A ....
Probab=45.14 E-value=45 Score=22.20 Aligned_cols=34 Identities=21% Similarity=0.208 Sum_probs=26.4
Q ss_pred CChhHHHHHHHHHHCCCcEEEEcCCcHHhHHHHH
Q 029504 89 LSPGIDELVKKLKANNKNVYLISGGFRHMINPIA 122 (192)
Q Consensus 89 ~~~~~~e~l~~l~~~g~~~~IvS~~~~~~~~~~l 122 (192)
-.+...+.++.++++|.+++.+|+.....+....
T Consensus 65 ~~~~~~~~~~~ak~~g~~vi~iT~~~~~~l~~~a 98 (131)
T PF01380_consen 65 ETRELIELLRFAKERGAPVILITSNSESPLARLA 98 (131)
T ss_dssp TTHHHHHHHHHHHHTTSEEEEEESSTTSHHHHHS
T ss_pred cchhhhhhhHHHHhcCCeEEEEeCCCCCchhhhC
Confidence 4577889999999999999999977665444433
No 275
>PRK11145 pflA pyruvate formate lyase-activating enzyme 1; Provisional
Probab=45.10 E-value=54 Score=24.97 Aligned_cols=29 Identities=17% Similarity=0.250 Sum_probs=24.3
Q ss_pred CCCChhH-HHHHHHHHHCCCcEEEEcCCcH
Q 029504 87 PRLSPGI-DELVKKLKANNKNVYLISGGFR 115 (192)
Q Consensus 87 ~~~~~~~-~e~l~~l~~~g~~~~IvS~~~~ 115 (192)
+.++++. .++++.+++.|+.+.+.|++..
T Consensus 81 Pll~~~~~~~l~~~~k~~g~~i~l~TNG~~ 110 (246)
T PRK11145 81 AILQAEFVRDWFRACKKEGIHTCLDTNGFV 110 (246)
T ss_pred HhcCHHHHHHHHHHHHHcCCCEEEECCCCC
Confidence 4567785 5999999999999999998863
No 276
>TIGR03127 RuMP_HxlB 6-phospho 3-hexuloisomerase. Members of this protein family are 6-phospho 3-hexuloisomerase (PHI), or the PHI domain of a fusion protein. This enzyme is part of the ribulose monophosphate (RuMP) pathway, which in one direction removes the toxic metabolite formaldehyde by assimilation into fructose-6-phosphate. In the other direction, in species lacking a complete pentose phosphate pathway, the RuMP pathway yields ribulose-5-phosphate, necessary for nucleotide biosynthesis, at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin.
Probab=44.59 E-value=27 Score=25.16 Aligned_cols=34 Identities=18% Similarity=0.147 Sum_probs=27.4
Q ss_pred CChhHHHHHHHHHHCCCcEEEEcCCcHHhHHHHH
Q 029504 89 LSPGIDELVKKLKANNKNVYLISGGFRHMINPIA 122 (192)
Q Consensus 89 ~~~~~~e~l~~l~~~g~~~~IvS~~~~~~~~~~l 122 (192)
-.+.+.+.++.++++|.+++.+|+.....+....
T Consensus 84 ~t~~~i~~~~~ak~~g~~ii~IT~~~~s~la~~a 117 (179)
T TIGR03127 84 ETESLVTVAKKAKEIGATVAAITTNPESTLGKLA 117 (179)
T ss_pred CcHHHHHHHHHHHHCCCeEEEEECCCCCchHHhC
Confidence 4577889999999999999999988775555443
No 277
>cd05013 SIS_RpiR RpiR-like protein. RpiR contains a SIS (Sugar ISomerase) domain, which is found in many phosphosugar isomerases and phosphosugar binding proteins. In E. coli, rpiR negatively regulates the expression of rpiB gene. Both rpiB and rpiA are ribose phosphate isomerases that catalyze the reversible reactions of ribose 5-phosphate into ribulose 5-phosphate.
Probab=44.00 E-value=40 Score=22.50 Aligned_cols=30 Identities=13% Similarity=0.077 Sum_probs=24.2
Q ss_pred ChhHHHHHHHHHHCCCcEEEEcCCcHHhHH
Q 029504 90 SPGIDELVKKLKANNKNVYLISGGFRHMIN 119 (192)
Q Consensus 90 ~~~~~e~l~~l~~~g~~~~IvS~~~~~~~~ 119 (192)
.+.+.+.++.++++|.+++++|+.....+.
T Consensus 73 ~~~~~~~~~~a~~~g~~iv~iT~~~~~~l~ 102 (139)
T cd05013 73 TKETVEAAEIAKERGAKVIAITDSANSPLA 102 (139)
T ss_pred CHHHHHHHHHHHHcCCeEEEEcCCCCChhH
Confidence 467888999999999999999987664333
No 278
>TIGR02493 PFLA pyruvate formate-lyase 1-activating enzyme. An iron-sulfur protein with a radical-SAM domain (pfam04055). A single glycine residue in EC 2.3.1.54, formate C-acetyltransferase (formate-pyruvate lyase), is oxidized to the corresponding radical by transfer of H from its CH2 to AdoMet with concomitant cleavage of the latter. The reaction requires Fe2+. The first stage is reduction of the AdoMet to give methionine and the 5'-deoxyadenosin-5-yl radical, which then abstracts a hydrogen radical from the glycine residue.
Probab=41.80 E-value=80 Score=23.74 Aligned_cols=37 Identities=27% Similarity=0.398 Sum_probs=27.9
Q ss_pred CCCChhH-HHHHHHHHHCCCcEEEEcCCc----HHhHHHHHH
Q 029504 87 PRLSPGI-DELVKKLKANNKNVYLISGGF----RHMINPIAS 123 (192)
Q Consensus 87 ~~~~~~~-~e~l~~l~~~g~~~~IvS~~~----~~~~~~~l~ 123 (192)
+.++++. .++++.+++.|+.+.+.|++. ...+..+++
T Consensus 76 Pll~~~~~~~li~~~~~~g~~~~i~TNG~~~~~~~~~~~ll~ 117 (235)
T TIGR02493 76 PLLQPEFLSELFKACKELGIHTCLDTSGFLGGCTEAADELLE 117 (235)
T ss_pred cccCHHHHHHHHHHHHHCCCCEEEEcCCCCCccHHHHHHHHH
Confidence 4577874 599999999999999999993 334455555
No 279
>PF04312 DUF460: Protein of unknown function (DUF460); InterPro: IPR007408 This is an archaeal protein of unknown function.
Probab=41.31 E-value=65 Score=22.57 Aligned_cols=37 Identities=14% Similarity=0.146 Sum_probs=30.3
Q ss_pred hHHHHHHHHHHCCCcEEEEcC--CcHHhHHHHHHHcCCC
Q 029504 92 GIDELVKKLKANNKNVYLISG--GFRHMINPIASVLGIP 128 (192)
Q Consensus 92 ~~~e~l~~l~~~g~~~~IvS~--~~~~~~~~~l~~~g~~ 128 (192)
+.-++++++.+.|.++.|+|. ....+++.+...++..
T Consensus 64 ~~~evi~~I~~~G~PviVAtDV~p~P~~V~Kia~~f~A~ 102 (138)
T PF04312_consen 64 SRSEVIEWISEYGKPVIVATDVSPPPETVKKIARSFNAV 102 (138)
T ss_pred CHHHHHHHHHHcCCEEEEEecCCCCcHHHHHHHHHhCCc
Confidence 345788889999999999984 4667899999988875
No 280
>cd02072 Glm_B12_BD B12 binding domain of glutamate mutase (Glm). Glutamate mutase catalysis the conversion of (S)-glutamate with (2S,3S)-3-methylaspartate. The rearrangement reaction is initiated by the extraction of a hydrogen from the protein-bound substrate by a 5'-desoxyadenosyl radical, which is generated by the homolytic cleavage of the organometallic bond of the cofactor B12. Glm is a heterotetrameric molecule consisting of two alpha and two epsilon polypeptide chains.
Probab=40.37 E-value=70 Score=22.09 Aligned_cols=46 Identities=15% Similarity=0.256 Sum_probs=31.3
Q ss_pred CCChhHHHHHHHHHHCCC-cEEE-EcCCc----H--HhHHHHHHHcCCCCCcEEec
Q 029504 88 RLSPGIDELVKKLKANNK-NVYL-ISGGF----R--HMINPIASVLGIPPENIFAN 135 (192)
Q Consensus 88 ~~~~~~~e~l~~l~~~g~-~~~I-vS~~~----~--~~~~~~l~~~g~~~~~~~~~ 135 (192)
.-.+.++++++.|+++|. .+-| +-+.. . ...+..++.+|++ .+|+.
T Consensus 62 ~~~~~~~~~~~~l~~~gl~~v~vivGG~~~i~~~d~~~~~~~L~~~Gv~--~vf~p 115 (128)
T cd02072 62 HGEIDCKGLREKCDEAGLKDILLYVGGNLVVGKQDFEDVEKRFKEMGFD--RVFAP 115 (128)
T ss_pred CCHHHHHHHHHHHHHCCCCCCeEEEECCCCCChhhhHHHHHHHHHcCCC--EEECc
Confidence 456788999999999986 4433 33331 1 2345778889998 77774
No 281
>COG2044 Predicted peroxiredoxins [General function prediction only]
Probab=40.29 E-value=47 Score=22.70 Aligned_cols=28 Identities=18% Similarity=0.337 Sum_probs=24.1
Q ss_pred CCCChhHHHHHHHHHHCCCcEEEEcCCc
Q 029504 87 PRLSPGIDELVKKLKANNKNVYLISGGF 114 (192)
Q Consensus 87 ~~~~~~~~e~l~~l~~~g~~~~IvS~~~ 114 (192)
....|-..++++.++++|++++++..+.
T Consensus 58 ~~~~~~l~~~~~~a~e~GVk~yvCe~s~ 85 (120)
T COG2044 58 HPNFPPLEELIKQAIEAGVKIYVCEQSL 85 (120)
T ss_pred CCCCCCHHHHHHHHHHcCCEEEEEcchh
Confidence 3567999999999999999999997653
No 282
>cd04795 SIS SIS domain. SIS (Sugar ISomerase) domains are found in many phosphosugar isomerases and phosphosugar binding proteins. SIS domains are also found in proteins that regulate the expression of genes involved in synthesis of phosphosugars.
Probab=39.78 E-value=46 Score=20.28 Aligned_cols=23 Identities=13% Similarity=0.001 Sum_probs=20.5
Q ss_pred CChhHHHHHHHHHHCCCcEEEEc
Q 029504 89 LSPGIDELVKKLKANNKNVYLIS 111 (192)
Q Consensus 89 ~~~~~~e~l~~l~~~g~~~~IvS 111 (192)
-.+.+.++++.++++|.+++.+|
T Consensus 59 ~t~~~~~~~~~a~~~g~~ii~it 81 (87)
T cd04795 59 RTEELLAALEIAKELGIPVIAIT 81 (87)
T ss_pred CCHHHHHHHHHHHHcCCeEEEEe
Confidence 45789999999999999998888
No 283
>KOG1154 consensus Gamma-glutamyl kinase [Amino acid transport and metabolism]
Probab=39.69 E-value=53 Score=25.46 Aligned_cols=34 Identities=24% Similarity=0.208 Sum_probs=27.0
Q ss_pred hhHHHHHHHHHHCCCcEEEEcCCcHHhHHHHHHH
Q 029504 91 PGIDELVKKLKANNKNVYLISGGFRHMINPIASV 124 (192)
Q Consensus 91 ~~~~e~l~~l~~~g~~~~IvS~~~~~~~~~~l~~ 124 (192)
.-+.|.+..|++.|+.+.+||++--.+-.+.++.
T Consensus 35 a~IVEqV~~L~~~G~evilVSSGaVA~G~qrLr~ 68 (285)
T KOG1154|consen 35 ASIVEQVSELQRMGREVILVSSGAVAFGRQRLRQ 68 (285)
T ss_pred HHHHHHHHHHHhcCceEEEEecchhhhhHHHhhh
Confidence 4577889999999999999999976665555543
No 284
>cd03018 PRX_AhpE_like Peroxiredoxin (PRX) family, AhpE-like subfamily; composed of proteins similar to Mycobacterium tuberculosis AhpE. AhpE is described as a 1-cys PRX because of the absence of a resolving cysteine. The structure and sequence of AhpE, however, show greater similarity to 2-cys PRXs than 1-cys PRXs. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. The first step of catalysis is the nucleophilic attack by the peroxidatic cysteine on the peroxide leading to the formation of a cysteine sulfenic acid intermediate. The absence of a resolving cysteine suggests that functional AhpE is regenerated by an external reductant. The solution behavior and crystal structure of AhpE show that it forms dimers and octamers.
Probab=39.55 E-value=99 Score=21.07 Aligned_cols=34 Identities=18% Similarity=0.129 Sum_probs=16.4
Q ss_pred HHHHHHHHHCCCcEEEEcCCcHHhHHHHHHHcCC
Q 029504 94 DELVKKLKANNKNVYLISGGFRHMINPIASVLGI 127 (192)
Q Consensus 94 ~e~l~~l~~~g~~~~IvS~~~~~~~~~~l~~~g~ 127 (192)
.++.+.+++.|+.++.+|.+....++..++..++
T Consensus 52 ~~~~~~~~~~~v~vi~vs~d~~~~~~~~~~~~~~ 85 (149)
T cd03018 52 RDSLELFEAAGAEVLGISVDSPFSLRAWAEENGL 85 (149)
T ss_pred HHHHHHHHhCCCEEEEecCCCHHHHHHHHHhcCC
Confidence 3344444445555555554444444555554444
No 285
>cd05006 SIS_GmhA Phosphoheptose isomerase is a member of the SIS (Sugar ISomerase) superfamily. Phosphoheptose isomerase catalyzes the isomerization of sedoheptulose 7-phosphate into D-glycero-D-mannoheptose 7-phosphate. This is the first step of the biosynthesis of gram-negative bacteria inner core lipopolysaccharide precursor, L-glycero-D-mannoheptose (Gmh).
Probab=38.81 E-value=45 Score=23.96 Aligned_cols=29 Identities=14% Similarity=0.125 Sum_probs=24.0
Q ss_pred CChhHHHHHHHHHHCCCcEEEEcCCcHHh
Q 029504 89 LSPGIDELVKKLKANNKNVYLISGGFRHM 117 (192)
Q Consensus 89 ~~~~~~e~l~~l~~~g~~~~IvS~~~~~~ 117 (192)
-.+.+.+.++.++++|.+++.+|+.....
T Consensus 113 ~t~~~i~~~~~ak~~Ga~vI~IT~~~~s~ 141 (177)
T cd05006 113 NSPNVLKALEAAKERGMKTIALTGRDGGK 141 (177)
T ss_pred CCHHHHHHHHHHHHCCCEEEEEeCCCCCc
Confidence 46789999999999999999998875543
No 286
>PRK13937 phosphoheptose isomerase; Provisional
Probab=38.27 E-value=51 Score=24.11 Aligned_cols=31 Identities=13% Similarity=0.103 Sum_probs=24.6
Q ss_pred CChhHHHHHHHHHHCCCcEEEEcCCcHHhHH
Q 029504 89 LSPGIDELVKKLKANNKNVYLISGGFRHMIN 119 (192)
Q Consensus 89 ~~~~~~e~l~~l~~~g~~~~IvS~~~~~~~~ 119 (192)
-.+.+.+.++.++++|.+++.+|+.....+.
T Consensus 118 ~t~~~~~~~~~ak~~g~~~I~iT~~~~s~L~ 148 (188)
T PRK13937 118 NSPNVLAALEKARELGMKTIGLTGRDGGKMK 148 (188)
T ss_pred CcHHHHHHHHHHHHCCCeEEEEeCCCCChhH
Confidence 4678889999999999999999887554433
No 287
>TIGR00441 gmhA phosphoheptose isomerase. Involved in lipopolysaccharide biosynthesis it may have a role in virulence in Haemophilus ducreyi.
Probab=38.14 E-value=47 Score=23.38 Aligned_cols=31 Identities=10% Similarity=0.063 Sum_probs=24.9
Q ss_pred CChhHHHHHHHHHHCCCcEEEEcCCcHHhHH
Q 029504 89 LSPGIDELVKKLKANNKNVYLISGGFRHMIN 119 (192)
Q Consensus 89 ~~~~~~e~l~~l~~~g~~~~IvS~~~~~~~~ 119 (192)
-.+.+.+.++.++++|.+++.+|+.....+.
T Consensus 91 ~t~~~~~~~~~a~~~g~~ii~iT~~~~s~l~ 121 (154)
T TIGR00441 91 NSKNVLKAIEAAKDKGMKTITLAGKDGGKMA 121 (154)
T ss_pred CCHHHHHHHHHHHHCCCEEEEEeCCCCCchh
Confidence 4678899999999999999999986554333
No 288
>KOG3040 consensus Predicted sugar phosphatase (HAD superfamily) [General function prediction only]
Probab=38.13 E-value=24 Score=26.82 Aligned_cols=28 Identities=21% Similarity=0.198 Sum_probs=19.5
Q ss_pred HHHHHHHHHcCC--ceEEEEeCCcc-chhhh
Q 029504 162 AAVQQIRKAHAY--KVLAMIGDGAT-DLEVS 189 (192)
Q Consensus 162 ~~l~~~~~~~g~--~~~~~iGDs~~-Di~~a 189 (192)
.-+++.++..|+ ++++||||-.| |+-.|
T Consensus 185 ~fFe~al~~~gv~p~~aVMIGDD~~dDvgGA 215 (262)
T KOG3040|consen 185 FFFESALQALGVDPEEAVMIGDDLNDDVGGA 215 (262)
T ss_pred HHHHHHHHhcCCChHHheEEccccccchhhH
Confidence 345566666776 89999999987 44433
No 289
>KOG3107 consensus Predicted haloacid dehalogenase-like hydrolase (eyes absent) [General function prediction only]
Probab=37.70 E-value=2.4e+02 Score=23.58 Aligned_cols=32 Identities=25% Similarity=0.438 Sum_probs=24.4
Q ss_pred CCHHHHHHHHHHHcCC-ceEEEEeCCccchhhh
Q 029504 158 GGKAAAVQQIRKAHAY-KVLAMIGDGATDLEVS 189 (192)
Q Consensus 158 ~~K~~~l~~~~~~~g~-~~~~~iGDs~~Di~~a 189 (192)
.+|...++.+.+++|- -.-++||||.---.+|
T Consensus 408 iGKescFerI~~RFg~K~~yvvIgdG~eee~aA 440 (468)
T KOG3107|consen 408 IGKESCFERIQSRFGRKVVYVVIGDGVEEEQAA 440 (468)
T ss_pred ccHHHHHHHHHHHhCCceEEEEecCcHHHHHHH
Confidence 4789999999999996 5678899995433333
No 290
>COG1180 PflA Pyruvate-formate lyase-activating enzyme [Posttranslational modification, protein turnover, chaperones]
Probab=35.53 E-value=76 Score=24.70 Aligned_cols=37 Identities=16% Similarity=0.176 Sum_probs=27.9
Q ss_pred CCChhHHHHHHHHHHCCCcEEEEcCCcHH--hHHHHHHH
Q 029504 88 RLSPGIDELVKKLKANNKNVYLISGGFRH--MINPIASV 124 (192)
Q Consensus 88 ~~~~~~~e~l~~l~~~g~~~~IvS~~~~~--~~~~~l~~ 124 (192)
...+.+.++++.+++.|+.+++.|++... ..+.+++.
T Consensus 96 ~q~e~~~~~~~~ake~Gl~~~l~TnG~~~~~~~~~l~~~ 134 (260)
T COG1180 96 LQAEFALDLLRAAKERGLHVALDTNGFLPPEALEELLPL 134 (260)
T ss_pred hhHHHHHHHHHHHHHCCCcEEEEcCCCCCHHHHHHHHhh
Confidence 45678889999999999999999999533 33344443
No 291
>COG1911 RPL30 Ribosomal protein L30E [Translation, ribosomal structure and biogenesis]
Probab=35.28 E-value=1e+02 Score=20.16 Aligned_cols=41 Identities=17% Similarity=0.285 Sum_probs=29.1
Q ss_pred CCChhHHHHHHHHHHCCCcEEEEcCCcHHhHHHHHHHc----CCC
Q 029504 88 RLSPGIDELVKKLKANNKNVYLISGGFRHMINPIASVL----GIP 128 (192)
Q Consensus 88 ~~~~~~~e~l~~l~~~g~~~~IvS~~~~~~~~~~l~~~----g~~ 128 (192)
...=|.++.++.++.-.-+++|+.++....++.-++.+ +++
T Consensus 19 kvilG~k~tiK~lk~gkaKliiiAsN~P~~~k~~ieyYAkLs~ip 63 (100)
T COG1911 19 KVILGSKRTIKSLKLGKAKLIIIASNCPKELKEDIEYYAKLSDIP 63 (100)
T ss_pred CEEEehHHHHHHHHcCCCcEEEEecCCCHHHHHHHHHHHHHcCCc
Confidence 35678999999999988888777666555555555544 665
No 292
>TIGR03278 methan_mark_10 putative methanogenesis marker protein 10. Members of this protein family, to date, are found in a completed prokaryotic genome if and only if the species is one of the archaeal methanogens. The presence of motifs with seven invariant Cys residues in the N-terminal 50 residues, including three instances of CXXC, would be consistent with function as an oxidoreductase with FeS clusters. The exact function is unknown, but likely is linked to methanogenesis. In most genomes, the member of this family is encoded by a gene next to, and divergently transcribed from, the methyl coenzyme M reductase operon.
Probab=34.81 E-value=61 Score=27.14 Aligned_cols=41 Identities=20% Similarity=0.221 Sum_probs=29.9
Q ss_pred CCCChhHHHHHHHHHHCCCcEEEE-cCCc----HHhHHHHHHHcCCC
Q 029504 87 PRLSPGIDELVKKLKANNKNVYLI-SGGF----RHMINPIASVLGIP 128 (192)
Q Consensus 87 ~~~~~~~~e~l~~l~~~g~~~~Iv-S~~~----~~~~~~~l~~~g~~ 128 (192)
+..+|.+.++++.+++.|+++.|. |++. ...++.+++ ++++
T Consensus 85 pl~~~~l~eLl~~lk~~gi~taI~~TnG~~l~~~e~~~~L~~-~gld 130 (404)
T TIGR03278 85 VSCYPELEELTKGLSDLGLPIHLGYTSGKGFDDPEIAEFLID-NGVR 130 (404)
T ss_pred cccCHHHHHHHHHHHhCCCCEEEeCCCCcccCCHHHHHHHHH-cCCC
Confidence 567899999999999999999985 8764 233444444 3454
No 293
>cd05005 SIS_PHI Hexulose-6-phosphate isomerase (PHI). PHI is a member of the SIS (Sugar ISomerase domain) superfamily. In the ribulose monophosphate pathway of formaldehyde fixation, hexulose-6-phosphate synthase catalyzes the condensation of ribulose-5-phosphate with formadelhyde to become hexulose-6-phosphate, which is then isomerized to fructose-6-phosphate by PHI.
Probab=34.58 E-value=62 Score=23.28 Aligned_cols=32 Identities=16% Similarity=0.146 Sum_probs=26.1
Q ss_pred CChhHHHHHHHHHHCCCcEEEEcCCcHHhHHH
Q 029504 89 LSPGIDELVKKLKANNKNVYLISGGFRHMINP 120 (192)
Q Consensus 89 ~~~~~~e~l~~l~~~g~~~~IvS~~~~~~~~~ 120 (192)
-.+.+.++++.++++|.+++.+|+.....+..
T Consensus 87 ~t~~~i~~~~~ak~~g~~iI~IT~~~~s~la~ 118 (179)
T cd05005 87 ETSSVVNAAEKAKKAGAKVVLITSNPDSPLAK 118 (179)
T ss_pred CcHHHHHHHHHHHHCCCeEEEEECCCCCchHH
Confidence 46788899999999999999999876654444
No 294
>cd03017 PRX_BCP Peroxiredoxin (PRX) family, Bacterioferritin comigratory protein (BCP) subfamily; composed of thioredoxin-dependent thiol peroxidases, widely expressed in pathogenic bacteria, that protect cells against toxicity from reactive oxygen species by reducing and detoxifying hydroperoxides. The protein was named BCP based on its electrophoretic mobility before its function was known. BCP shows substrate selectivity toward fatty acid hydroperoxides rather than hydrogen peroxide or alkyl hydroperoxides. BCP contains the peroxidatic cysteine but appears not to possess a resolving cysteine (some sequences, not all, contain a second cysteine but its role is still unknown). Unlike other PRXs, BCP exists as a monomer. The plant homolog of BCP is PRX Q, which is expressed only in leaves and is cellularly localized in the chloroplasts and the guard cells of stomata. Also included in this subfamily is the fungal nuclear protein, Dot5p (for disrupter of telomere silencing protein 5), w
Probab=34.47 E-value=1.4e+02 Score=19.99 Aligned_cols=27 Identities=22% Similarity=0.053 Sum_probs=10.4
Q ss_pred HHHCCCcEEEEcCCcHHhHHHHHHHcC
Q 029504 100 LKANNKNVYLISGGFRHMINPIASVLG 126 (192)
Q Consensus 100 l~~~g~~~~IvS~~~~~~~~~~l~~~g 126 (192)
+++.|+.++-+|.+....+...++..+
T Consensus 53 ~~~~~~~vv~is~d~~~~~~~~~~~~~ 79 (140)
T cd03017 53 FKALGAVVIGVSPDSVESHAKFAEKYG 79 (140)
T ss_pred HHHCCCEEEEEcCCCHHHHHHHHHHhC
Confidence 333344444443333333333333333
No 295
>PF01113 DapB_N: Dihydrodipicolinate reductase, N-terminus; InterPro: IPR000846 Dihydrodipicolinate reductase catalyzes the second step in the biosynthesis of diaminopimelic acid and lysine, the NAD or NADP-dependent reduction of 2,3-dihydrodipicolinate into 2,3,4,5-tetrahydrodipicolinate [, , ]. In Escherichia coli and Mycobacterium tuberculosis, dihydrodipicolinate reductase has equal specificity for NADH and NADPH, however in Thermotoga maritima there it has a greater affinity for NADPH []. In addition, the enzyme is inhibited by high concentrations of its substrate, which consequently acts as a feedback control on the lysine biosynthesis pathway. In T. maritima, the enzyme also lacks N-terminal and C-terminal loops which are present in enzyme of the former two organisms. This entry represents the N-terminal domain of dihydrodipicolinate reductase which binds the dinucleotide NAD(P)H.; GO: 0008839 dihydrodipicolinate reductase activity, 0009089 lysine biosynthetic process via diaminopimelate, 0055114 oxidation-reduction process; PDB: 3QY9_D 1VM6_C 1ARZ_A 1DIH_A 1DRW_A 1DRV_A 1DRU_A 2DAP_A 1DAP_B 3DAP_A ....
Probab=34.37 E-value=94 Score=20.95 Aligned_cols=37 Identities=8% Similarity=-0.019 Sum_probs=26.2
Q ss_pred CChhHHHHHHHHHHCCCcEEEEcCCcHHhHHHHHHHc
Q 029504 89 LSPGIDELVKKLKANNKNVYLISGGFRHMINPIASVL 125 (192)
Q Consensus 89 ~~~~~~e~l~~l~~~g~~~~IvS~~~~~~~~~~l~~~ 125 (192)
..+.+.+.++.+.++|.++++-|.+...-....++.+
T Consensus 76 ~p~~~~~~~~~~~~~g~~~ViGTTG~~~~~~~~l~~~ 112 (124)
T PF01113_consen 76 NPDAVYDNLEYALKHGVPLVIGTTGFSDEQIDELEEL 112 (124)
T ss_dssp -HHHHHHHHHHHHHHT-EEEEE-SSSHHHHHHHHHHH
T ss_pred ChHHhHHHHHHHHhCCCCEEEECCCCCHHHHHHHHHH
Confidence 3466778999999999999999999876555555543
No 296
>PF13704 Glyco_tranf_2_4: Glycosyl transferase family 2
Probab=33.69 E-value=1e+02 Score=19.37 Aligned_cols=35 Identities=17% Similarity=0.179 Sum_probs=26.9
Q ss_pred hhHHHHHHHHHHCCCc-EEEEcCCcHHhHHHHHHHc
Q 029504 91 PGIDELVKKLKANNKN-VYLISGGFRHMINPIASVL 125 (192)
Q Consensus 91 ~~~~e~l~~l~~~g~~-~~IvS~~~~~~~~~~l~~~ 125 (192)
+-+.++|.++++.|+. ++|+.++...-...+++.+
T Consensus 5 ~~L~~wl~~~~~lG~d~i~i~d~~s~D~t~~~l~~~ 40 (97)
T PF13704_consen 5 DYLPEWLAHHLALGVDHIYIYDDGSTDGTREILRAL 40 (97)
T ss_pred HHHHHHHHHHHHcCCCEEEEEECCCCccHHHHHHhC
Confidence 3467889999999987 6888887777667777764
No 297
>cd02071 MM_CoA_mut_B12_BD methylmalonyl CoA mutase B12 binding domain. This domain binds to B12 (adenosylcobamide), which initiates the conversion of succinyl CoA and methylmalonyl CoA by forming an adenosyl radical, which then undergoes a rearrangement exchanging a hydrogen atom with a group attached to a neighboring carbon atom. This family is present in both mammals and bacteria. Bacterial members are heterodimers and involved in the fermentation of pyruvate to propionate. Mammalian members are homodimers and responsible for the conversion of odd-chain fatty acids and branched-chain amino acids via propionyl CoA to succinyl CoA for further degradation.
Probab=33.38 E-value=1.5e+02 Score=19.85 Aligned_cols=44 Identities=14% Similarity=0.186 Sum_probs=26.5
Q ss_pred CChhHHHHHHHHHHCCC-cE-EEEcCCcHHhHHHHHHHcCCCCCcEEe
Q 029504 89 LSPGIDELVKKLKANNK-NV-YLISGGFRHMINPIASVLGIPPENIFA 134 (192)
Q Consensus 89 ~~~~~~e~l~~l~~~g~-~~-~IvS~~~~~~~~~~l~~~g~~~~~~~~ 134 (192)
..+.++++++.+++.|. .+ +++-+.........+..+|++ .+|.
T Consensus 63 ~~~~~~~~~~~L~~~~~~~i~i~~GG~~~~~~~~~~~~~G~d--~~~~ 108 (122)
T cd02071 63 HMTLFPEVIELLRELGAGDILVVGGGIIPPEDYELLKEMGVA--EIFG 108 (122)
T ss_pred hHHHHHHHHHHHHhcCCCCCEEEEECCCCHHHHHHHHHCCCC--EEEC
Confidence 45677888888988865 33 334433333334455678887 5555
No 298
>cd04906 ACT_ThrD-I_1 First of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase). This CD includes the first of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase) which catalyzes the committed step in branched chain amino acid biosynthesis in plants and microorganisms, the pyridoxal 5'-phosphate (PLP)-dependent dehydration/deamination of L-threonine (or L-serine) to 2-ketobutyrate (or pyruvate). ThrD-I is a cooperative, feedback-regulated (isoleucine and valine) allosteric enzyme that forms a tetramer and contains four pyridoxal phosphate moieties. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=33.11 E-value=58 Score=20.34 Aligned_cols=25 Identities=24% Similarity=0.227 Sum_probs=20.2
Q ss_pred hhHHHHHHHHHHCCCcEEEEcCCcH
Q 029504 91 PGIDELVKKLKANNKNVYLISGGFR 115 (192)
Q Consensus 91 ~~~~e~l~~l~~~g~~~~IvS~~~~ 115 (192)
....++++.|+++|+++.++|.+..
T Consensus 53 ~~~~~i~~~L~~~G~~~~~~~~~~~ 77 (85)
T cd04906 53 EELAELLEDLKSAGYEVVDLSDDEL 77 (85)
T ss_pred HHHHHHHHHHHHCCCCeEECCCCHH
Confidence 5588899999999999888776643
No 299
>PF05240 APOBEC_C: APOBEC-like C-terminal domain; InterPro: IPR007904 This domain is found at the C terminus of the Apolipoprotein B mRNA editing enzyme. Apobec-1 catalyzes C to U editing of apolipoprotein B (apoB) mRNA in the mammalian intestine. C to U RNA editing of mammalian apolipoprotein B (apoB) RNA is a site-specific posttranscriptional modification in which a single cytidine is enzymatically deaminated to uridine, thereby generating a UAA stop codon in the edited mRNA. The function of this domain is currently unknown.; GO: 0008270 zinc ion binding, 0016814 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amidines; PDB: 2NYT_D.
Probab=32.59 E-value=71 Score=18.54 Aligned_cols=23 Identities=17% Similarity=0.297 Sum_probs=16.9
Q ss_pred hhHHHHHHHHHHCCCcEEEEcCC
Q 029504 91 PGIDELVKKLKANNKNVYLISGG 113 (192)
Q Consensus 91 ~~~~e~l~~l~~~g~~~~IvS~~ 113 (192)
|+..+-|+.|.+.|.++.|.+-.
T Consensus 2 ~~~qegLr~L~~aG~~v~iM~~~ 24 (55)
T PF05240_consen 2 PDYQEGLRRLCQAGAQVSIMTYS 24 (55)
T ss_dssp HHHHHHHHHHHHTT-EEEE--HH
T ss_pred cHHHHHHHHHHHCCCeEEecCcH
Confidence 56788899999999999999843
No 300
>KOG2599 consensus Pyridoxal/pyridoxine/pyridoxamine kinase [Coenzyme transport and metabolism]
Probab=32.17 E-value=51 Score=26.04 Aligned_cols=29 Identities=17% Similarity=0.079 Sum_probs=24.6
Q ss_pred CCCChhHHHHHHHHHHCCCcEEEEcCCcH
Q 029504 87 PRLSPGIDELVKKLKANNKNVYLISGGFR 115 (192)
Q Consensus 87 ~~~~~~~~e~l~~l~~~g~~~~IvS~~~~ 115 (192)
.+-.+++++.++++++.|++.+|+|+..-
T Consensus 163 I~t~eda~~a~~~lhq~~v~~vVITS~~~ 191 (308)
T KOG2599|consen 163 IRTEEDAKRAVEKLHQKGVKTVVITSFDL 191 (308)
T ss_pred eccHHHHHHHHHHHHHhCCCEEEEEeeee
Confidence 45668899999999999999999987743
No 301
>PRK00414 gmhA phosphoheptose isomerase; Reviewed
Probab=31.60 E-value=78 Score=23.32 Aligned_cols=29 Identities=17% Similarity=0.111 Sum_probs=23.3
Q ss_pred CChhHHHHHHHHHHCCCcEEEEcCCcHHh
Q 029504 89 LSPGIDELVKKLKANNKNVYLISGGFRHM 117 (192)
Q Consensus 89 ~~~~~~e~l~~l~~~g~~~~IvS~~~~~~ 117 (192)
-.+.+.+.++.++++|.+++.+|+.....
T Consensus 123 ~t~~~i~~~~~ak~~g~~iI~iT~~~~s~ 151 (192)
T PRK00414 123 NSGNIIKAIEAARAKGMKVITLTGKDGGK 151 (192)
T ss_pred CCHHHHHHHHHHHHCCCeEEEEeCCCCCh
Confidence 35788889999999999999888875533
No 302
>PLN03063 alpha,alpha-trehalose-phosphate synthase (UDP-forming); Provisional
Probab=31.57 E-value=58 Score=29.89 Aligned_cols=41 Identities=22% Similarity=0.096 Sum_probs=29.9
Q ss_pred CCCCcCCCCHHHHHHHHHHHc--------CCceEEEEeCCc-cchhhhcc
Q 029504 151 NEPTSRSGGKAAAVQQIRKAH--------AYKVLAMIGDGA-TDLEVSIF 191 (192)
Q Consensus 151 ~~~~~~~~~K~~~l~~~~~~~--------g~~~~~~iGDs~-~Di~~a~~ 191 (192)
-+..|.+.+|+.+++.+.+++ +.+-++++||.. .|=.|-++
T Consensus 670 vEvrp~gvnKG~Av~~ll~~~~~~~~~~~~~dfvl~~Gdd~~~DEdmF~~ 719 (797)
T PLN03063 670 VEVHAIGVTKGAAIGRILGEIVHNKSMTTPIDFVFCSGYFLEKDEDVYTF 719 (797)
T ss_pred EEEEcCCCChHHHHHHHHHHhhhccccCCCCCEEEEeCCCCCCcHHHHHh
Confidence 334455679999999999865 236799999975 48766553
No 303
>PF10113 Fibrillarin_2: Fibrillarin-like archaeal protein; InterPro: IPR016760 Members of this protein family are HmdC, whose gene regularly occurs in the context of genes for HmdA (5,10-methenyltetrahydromethanopterin hydrogenase) and the radical SAM protein HmdB involved in biosynthesis of the HmdA cofactor. Bioinformatics suggests this protein, a homologue of eukaryotic fibrillarin, may be involved in biosynthesis of the guanylyl pyridinol cofactor in HmdA.
Probab=31.12 E-value=74 Score=26.79 Aligned_cols=29 Identities=24% Similarity=0.387 Sum_probs=24.1
Q ss_pred CHHHHHHHHHHHcCC--ceEEEEeCCccchh
Q 029504 159 GKAAAVQQIRKAHAY--KVLAMIGDGATDLE 187 (192)
Q Consensus 159 ~K~~~l~~~~~~~g~--~~~~~iGDs~~Di~ 187 (192)
.-.+.+.++.+++|. +-+++||||+-|+-
T Consensus 206 dE~~~Va~~Akk~gkGveaI~~vGDGyddLI 236 (505)
T PF10113_consen 206 DEMEEVAELAKKYGKGVEAIMHVGDGYDDLI 236 (505)
T ss_pred HHHHHHHHHHHHhCCCceEEEEecCChHHHH
Confidence 556778888888875 99999999998874
No 304
>TIGR01501 MthylAspMutase methylaspartate mutase, S subunit. This model represents the S (sigma) subunit of methylaspartate mutase (glutamate mutase), a cobalamin-dependent enzyme that catalyzes the first step in a pathway of glutamate fermentation.
Probab=30.98 E-value=1.8e+02 Score=20.22 Aligned_cols=46 Identities=13% Similarity=0.217 Sum_probs=30.7
Q ss_pred CCChhHHHHHHHHHHCCC--cEEEEcCCc----HHh--HHHHHHHcCCCCCcEEec
Q 029504 88 RLSPGIDELVKKLKANNK--NVYLISGGF----RHM--INPIASVLGIPPENIFAN 135 (192)
Q Consensus 88 ~~~~~~~e~l~~l~~~g~--~~~IvS~~~----~~~--~~~~l~~~g~~~~~~~~~ 135 (192)
.-.+.++++++.|+++|. ..+++-+.. ... .+..++.+|++ .+|+.
T Consensus 64 ~~~~~~~~~~~~l~~~gl~~~~vivGG~~vi~~~d~~~~~~~l~~~Gv~--~vF~p 117 (134)
T TIGR01501 64 HGEIDCKGLRQKCDEAGLEGILLYVGGNLVVGKQDFPDVEKRFKEMGFD--RVFAP 117 (134)
T ss_pred cCHHHHHHHHHHHHHCCCCCCEEEecCCcCcChhhhHHHHHHHHHcCCC--EEECc
Confidence 345678899999999986 344454431 222 35568889987 77774
No 305
>KOG1605 consensus TFIIF-interacting CTD phosphatase, including NLI-interacting factor (involved in RNA polymerase II regulation) [Transcription]
Probab=30.82 E-value=25 Score=27.52 Aligned_cols=40 Identities=18% Similarity=0.380 Sum_probs=33.8
Q ss_pred CCCChhHHHHHHHHHHCCCcEEEEcCCcHHhHHHHHHHcCC
Q 029504 87 PRLSPGIDELVKKLKANNKNVYLISGGFRHMINPIASVLGI 127 (192)
Q Consensus 87 ~~~~~~~~e~l~~l~~~g~~~~IvS~~~~~~~~~~l~~~g~ 127 (192)
..-+|++.+||...-+. +.+++.|++...++..++..++-
T Consensus 130 V~kRP~vdeFL~~~s~~-~e~v~FTAs~~~Ya~~v~D~LD~ 169 (262)
T KOG1605|consen 130 VRKRPHVDEFLSRVSKW-YELVLFTASLEVYADPLLDILDP 169 (262)
T ss_pred EEcCCCHHHHHHHhHHH-HHHHHHHhhhHHHHHHHHHHccC
Confidence 34679999999888776 88889999999999999988765
No 306
>PF00696 AA_kinase: Amino acid kinase family Match to Glutamate-5-kinases, C-terminal end of the alignment Match to Aspartate kinases; InterPro: IPR001048 This entry contains proteins with various specificities and includes the aspartate, glutamate and uridylate kinase families. In prokaryotes and plants the synthesis of the essential amino acids lysine and threonine is predominantly regulated by feed-back inhibition of aspartate kinase (AK) and dihydrodipicolinate synthase (DHPS). In Escherichia coli, thrA, metLM, and lysC encode aspartokinase isozymes that show feedback inhibition by threonine, methionine, and lysine, respectively []. The lysine-sensitive isoenzyme of aspartate kinase from spinach leaves has a subunit composition of 4 large and 4 small subunits []. In plants although the control of carbon fixation and nitrogen assimilation has been studied in detail, relatively little is known about the regulation of carbon and nitrogen flow into amino acids. The metabolic regulation of expression of an Arabidopsis thaliana aspartate kinase/homoserine dehydrogenase (AK/HSD) gene, which encodes two linked key enzymes in the biosynthetic pathway of aspartate family amino acids has been studied []. The conversion of aspartate into either the storage amino acid asparagine or aspartate family amino acids may be subject to a coordinated, reciprocal metabolic control, and this biochemical branch point is a part of a larger, coordinated regulatory mechanism of nitrogen and carbon storage and utilization.; GO: 0008652 cellular amino acid biosynthetic process; PDB: 2X2W_B 2WXB_B 1B7B_C 2J4L_F 2J4K_E 2J4J_F 2OGX_B 3QUO_A 3D40_A 3D41_A ....
Probab=30.42 E-value=1.2e+02 Score=22.86 Aligned_cols=37 Identities=16% Similarity=0.252 Sum_probs=27.7
Q ss_pred hhHHHHHHHHHHCCCcEEEEcCCcHHhHHHHHHHcCCC
Q 029504 91 PGIDELVKKLKANNKNVYLISGGFRHMINPIASVLGIP 128 (192)
Q Consensus 91 ~~~~e~l~~l~~~g~~~~IvS~~~~~~~~~~l~~~g~~ 128 (192)
+.+.+.+..+++.|.+++||+++. .+++..++.+++.
T Consensus 20 ~~~~~~i~~l~~~g~~vvvV~g~g-~~~~~~~~~~~~~ 56 (242)
T PF00696_consen 20 RELADDIALLSQLGIKVVVVHGGG-SFTDELLEKYGIE 56 (242)
T ss_dssp HHHHHHHHHHHHTTSEEEEEESSH-HHHHHHHHHCTHT
T ss_pred HHHHHHHHHHHhCCCeEEEEECCh-hhcCchHHhccCC
Confidence 345555666778999999999875 4778888877765
No 307
>PF02593 dTMP_synthase: Thymidylate synthase; InterPro: IPR003745 This entry describes proteins of unknown function.
Probab=30.35 E-value=2.3e+02 Score=21.57 Aligned_cols=68 Identities=12% Similarity=0.154 Sum_probs=44.5
Q ss_pred CCChhHH-HHHHHHHHCCCcEEEEcCCcHH-----hHHHHHHHcCCCCCcEEecceeEecCCeeeeccCCCCCcCCCCHH
Q 029504 88 RLSPGID-ELVKKLKANNKNVYLISGGFRH-----MINPIASVLGIPPENIFANQLLFKSSGEFLGFDANEPTSRSGGKA 161 (192)
Q Consensus 88 ~~~~~~~-e~l~~l~~~g~~~~IvS~~~~~-----~~~~~l~~~g~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~K~ 161 (192)
.++|++. ++.+.+++.|.+..|+.+.... -++..++.+|+. -.+...++.- ...+-
T Consensus 59 ~lHPDl~~~l~~~~~e~g~kavIvp~~~~~~g~~~~lk~~~e~~gi~--~~~P~~~CsL----------------~~~~~ 120 (217)
T PF02593_consen 59 GLHPDLTYELPEIAKEAGVKAVIVPSESPKPGLRRQLKKQLEEFGIE--VEFPKPFCSL----------------EENGN 120 (217)
T ss_pred ccCchhHHHHHHHHHHcCCCEEEEecCCCccchHHHHHHHHHhcCce--eecCcccccc----------------CCCCC
Confidence 4678877 7788888899999988665444 677777888875 2233222110 01344
Q ss_pred HHHHHHHHHcCC
Q 029504 162 AAVQQIRKAHAY 173 (192)
Q Consensus 162 ~~l~~~~~~~g~ 173 (192)
..+.++.+.+|.
T Consensus 121 p~i~~F~~~fGk 132 (217)
T PF02593_consen 121 PQIDEFAEYFGK 132 (217)
T ss_pred hhHHHHHHHhCC
Confidence 667888888885
No 308
>cd01580 AcnA_IRP_Swivel Aconitase A swivel domain. This is the major form of the TCA cycle enzyme aconitate hydratase, also known as aconitase and citrate hydro-lyase. It includes bacterial and archaeal aconitase A, and the eukaryotic cytosolic form of aconitase. This group also includes sequences that have been shown to act as an iron-responsive element (IRE) binding protein in animals and may have the same role in other eukaryotes. This is the aconitase-like swivel domain, which is believed to undergo swivelling conformational change in the enzyme mechanism.
Probab=30.31 E-value=2.1e+02 Score=20.83 Aligned_cols=41 Identities=20% Similarity=0.295 Sum_probs=32.2
Q ss_pred HHHHHHHHHHCCCcEEEE------cCCcHHhHHHHHHHcCCCCCcEEec
Q 029504 93 IDELVKKLKANNKNVYLI------SGGFRHMINPIASVLGIPPENIFAN 135 (192)
Q Consensus 93 ~~e~l~~l~~~g~~~~Iv------S~~~~~~~~~~l~~~g~~~~~~~~~ 135 (192)
+.+.....++.|.+++|+ +++.++.+...+..+|+. -+++.
T Consensus 84 i~~aA~~Yk~~g~plIIvaG~nfG~GSSRE~Aa~~~~~lGi~--aVIA~ 130 (171)
T cd01580 84 IYDAAMRYKEEGVPLVILAGKEYGSGSSRDWAAKGPFLLGVK--AVIAE 130 (171)
T ss_pred HHHHHHHHHHcCCcEEEEccCcccCCCcHHHHHHHHHHhCCC--EEEEc
Confidence 678888889999999888 455677888888889997 45543
No 309
>cd01012 YcaC_related YcaC related amidohydrolases; E.coli YcaC is an homooctameric hydrolase with unknown specificity. Despite its weak sequence similarity, it is structurally related to other amidohydrolases and shares conserved active site residues with them. Multimerisation interface seems not to be conserved in all members.
Probab=30.16 E-value=1.9e+02 Score=20.17 Aligned_cols=23 Identities=26% Similarity=0.147 Sum_probs=18.8
Q ss_pred CChhHHHHHHHHHHCCCcEEEEc
Q 029504 89 LSPGIDELVKKLKANNKNVYLIS 111 (192)
Q Consensus 89 ~~~~~~e~l~~l~~~g~~~~IvS 111 (192)
+.+.+..+++..+++|.+++.+.
T Consensus 21 ~~~~i~~l~~~ar~~g~pVi~~~ 43 (157)
T cd01012 21 LINNTVKLAKAAKLLDVPVILTE 43 (157)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEe
Confidence 45677888999999999988775
No 310
>COG1058 CinA Predicted nucleotide-utilizing enzyme related to molybdopterin-biosynthesis enzyme MoeA [General function prediction only]
Probab=30.11 E-value=1.4e+02 Score=23.26 Aligned_cols=38 Identities=24% Similarity=0.409 Sum_probs=28.6
Q ss_pred hhHHHHHHHHHHCCCcEEEEcCCc-----HHhHHHHHHHcCCCC
Q 029504 91 PGIDELVKKLKANNKNVYLISGGF-----RHMINPIASVLGIPP 129 (192)
Q Consensus 91 ~~~~e~l~~l~~~g~~~~IvS~~~-----~~~~~~~l~~~g~~~ 129 (192)
+.+.+.++.+.++ ..++|+|||- ..+.+.+++.+|.+.
T Consensus 48 ~~I~~~l~~a~~r-~D~vI~tGGLGPT~DDiT~e~vAka~g~~l 90 (255)
T COG1058 48 DRIVEALREASER-ADVVITTGGLGPTHDDLTAEAVAKALGRPL 90 (255)
T ss_pred HHHHHHHHHHHhC-CCEEEECCCcCCCccHhHHHHHHHHhCCCc
Confidence 5677888888888 9999999983 345666777776653
No 311
>PHA01735 hypothetical protein
Probab=29.93 E-value=88 Score=19.05 Aligned_cols=30 Identities=13% Similarity=0.127 Sum_probs=24.7
Q ss_pred CChhHHHHHHHHHHCCCcEEEEcCCcHHhH
Q 029504 89 LSPGIDELVKKLKANNKNVYLISGGFRHMI 118 (192)
Q Consensus 89 ~~~~~~e~l~~l~~~g~~~~IvS~~~~~~~ 118 (192)
-..+....+++|+++++.-+.+.+++...+
T Consensus 31 TtaDL~AA~d~Lk~NdItgv~~~gspl~~L 60 (76)
T PHA01735 31 TTADLRAACDWLKSNDITGVAVDGSPLAKL 60 (76)
T ss_pred cHHHHHHHHHHHHHCCCceeeCCCCHHHHH
Confidence 446788889999999999999998876544
No 312
>PRK10674 deoxyribodipyrimidine photolyase; Provisional
Probab=29.78 E-value=1.2e+02 Score=25.95 Aligned_cols=45 Identities=9% Similarity=0.149 Sum_probs=29.5
Q ss_pred CChhHHHHHHHHHHCCCcEEEEcC----CcHHhHHHHHHHcCCCCCcEEec
Q 029504 89 LSPGIDELVKKLKANNKNVYLISG----GFRHMINPIASVLGIPPENIFAN 135 (192)
Q Consensus 89 ~~~~~~e~l~~l~~~g~~~~IvS~----~~~~~~~~~l~~~g~~~~~~~~~ 135 (192)
+.+++.++=+.|++.|.+++|.++ .+...+..+++.+++. .++.+
T Consensus 55 l~esL~~L~~~L~~~g~~L~v~~g~~~g~~~~vl~~l~~~~~i~--~v~~~ 103 (472)
T PRK10674 55 INAQLNALQIALAEKGIPLLFHEVDDFAASVEWLKQFCQQHQVT--HLFYN 103 (472)
T ss_pred HHHHHHHHHHHHHHcCCceEEEecCCcCCHHHHHHHHHHHcCCC--EEEEe
Confidence 345666666777777888887764 4666667777766665 44443
No 313
>PF04007 DUF354: Protein of unknown function (DUF354); InterPro: IPR007152 Members of this family are around 350 amino acids in length. They are found in archaea and some bacteria and have no known function.
Probab=29.50 E-value=85 Score=25.53 Aligned_cols=35 Identities=11% Similarity=0.379 Sum_probs=28.0
Q ss_pred HHHHHHHHHHCCCcEEEEcCCcHHhHHHHHHHcCCC
Q 029504 93 IDELVKKLKANNKNVYLISGGFRHMINPIASVLGIP 128 (192)
Q Consensus 93 ~~e~l~~l~~~g~~~~IvS~~~~~~~~~~l~~~g~~ 128 (192)
.+.+++.|+++|+.+.|.+-+ ...+..+++.+|++
T Consensus 16 Fk~~I~eL~~~GheV~it~R~-~~~~~~LL~~yg~~ 50 (335)
T PF04007_consen 16 FKNIIRELEKRGHEVLITARD-KDETEELLDLYGID 50 (335)
T ss_pred HHHHHHHHHhCCCEEEEEEec-cchHHHHHHHcCCC
Confidence 456899999999997766654 56778899999997
No 314
>TIGR02668 moaA_archaeal probable molybdenum cofactor biosynthesis protein A, archaeal. This model describes an archaeal family related, and predicted to be functionally equivalent, to molybdenum cofactor biosynthesis protein A (MoaA) of bacteria (see TIGR02666).
Probab=29.06 E-value=72 Score=25.14 Aligned_cols=28 Identities=21% Similarity=0.484 Sum_probs=24.3
Q ss_pred CCCChhHHHHHHHHHHCCC-cEEEEcCCc
Q 029504 87 PRLSPGIDELVKKLKANNK-NVYLISGGF 114 (192)
Q Consensus 87 ~~~~~~~~e~l~~l~~~g~-~~~IvS~~~ 114 (192)
+.+++++.++++.+++.|+ .+.|.|++.
T Consensus 67 Pll~~~l~~iv~~l~~~g~~~v~i~TNG~ 95 (302)
T TIGR02668 67 PLLRKDLIEIIRRIKDYGIKDVSMTTNGI 95 (302)
T ss_pred cccccCHHHHHHHHHhCCCceEEEEcCch
Confidence 5678899999999999998 888999885
No 315
>TIGR00640 acid_CoA_mut_C methylmalonyl-CoA mutase C-terminal domain. Methylmalonyl-CoA mutase (EC 5.4.99.2) catalyzes a reversible isomerization between L-methylmalonyl-CoA and succinyl-CoA. The enzyme uses an adenosylcobalamin cofactor. It may be a homodimer, as in mitochondrion, or a heterodimer with partially homologous beta chain that does not bind the adenosylcobalamin cofactor, as in Propionibacterium freudenreichii. The most similar archaeal sequences are separate chains, such as AF2215 and AF2219 of Archaeoglobus fulgidus, that correspond roughly to the first 500 and last 130 residues, respectively of known methylmalonyl-CoA mutases. This model describes the C-terminal domain subfamily. In a neighbor-joining tree (methylaspartate mutase S chain as the outgroup), AF2219 branches with a coenzyme B12-dependent enzyme known not to be 5.4.99.2.
Probab=29.01 E-value=2e+02 Score=19.83 Aligned_cols=44 Identities=16% Similarity=0.217 Sum_probs=24.7
Q ss_pred ChhHHHHHHHHHHCCC-cE-EEEcCCcHHhHHHHHHHcCCCCCcEEec
Q 029504 90 SPGIDELVKKLKANNK-NV-YLISGGFRHMINPIASVLGIPPENIFAN 135 (192)
Q Consensus 90 ~~~~~e~l~~l~~~g~-~~-~IvS~~~~~~~~~~l~~~g~~~~~~~~~ 135 (192)
.+.++++++.|+++|. .+ +++-+.....-...++.+|++ .+|..
T Consensus 67 ~~~~~~~~~~L~~~g~~~i~vivGG~~~~~~~~~l~~~Gvd--~~~~~ 112 (132)
T TIGR00640 67 LTLVPALRKELDKLGRPDILVVVGGVIPPQDFDELKEMGVA--EIFGP 112 (132)
T ss_pred HHHHHHHHHHHHhcCCCCCEEEEeCCCChHhHHHHHHCCCC--EEECC
Confidence 3557777888888765 22 333322222234446778887 56653
No 316
>PF07611 DUF1574: Protein of unknown function (DUF1574); InterPro: IPR011468 This is a family of hypothetical proteins found in Leptospira interrogans and other bacteria.
Probab=28.99 E-value=1e+02 Score=25.24 Aligned_cols=36 Identities=17% Similarity=0.104 Sum_probs=29.4
Q ss_pred HHHHHHHHHHCCCcEEEEcCCcHHhHHHHHHHcCCC
Q 029504 93 IDELVKKLKANNKNVYLISGGFRHMINPIASVLGIP 128 (192)
Q Consensus 93 ~~e~l~~l~~~g~~~~IvS~~~~~~~~~~l~~~g~~ 128 (192)
..++|+.++++|+++++++.......+...+..++.
T Consensus 254 ~e~~L~~ake~~I~~vl~~P~V~~~~~~~~~~~~~~ 289 (345)
T PF07611_consen 254 LEKFLKLAKENGIPVVLWWPKVSPPYEKLYKELKVY 289 (345)
T ss_pred HHHHHHHHHHcCCcEEEEEeccCHHHHHHHHhhchh
Confidence 556799999999999999988887777777766664
No 317
>PRK11623 pcnB poly(A) polymerase I; Provisional
Probab=28.96 E-value=70 Score=27.39 Aligned_cols=31 Identities=23% Similarity=0.516 Sum_probs=26.5
Q ss_pred CCChhHHHHHHHHHHCCCcEEEEcCCcHHhH
Q 029504 88 RLSPGIDELVKKLKANNKNVYLISGGFRHMI 118 (192)
Q Consensus 88 ~~~~~~~e~l~~l~~~g~~~~IvS~~~~~~~ 118 (192)
.+.+.+..+++.|++.|+..|||-|+.++.+
T Consensus 50 ~i~~~a~~Vl~~L~~~G~eaYLVGG~VRDlL 80 (472)
T PRK11623 50 DISENALKVLYRLNKAGYEAYLVGGGVRDLL 80 (472)
T ss_pred cCCHHHHHHHHHHHHCCCeEEEeChHHHHHH
Confidence 4779999999999999999999987766543
No 318
>PRK13602 putative ribosomal protein L7Ae-like; Provisional
Probab=28.54 E-value=1.3e+02 Score=18.78 Aligned_cols=41 Identities=20% Similarity=0.317 Sum_probs=27.8
Q ss_pred CCChhHHHHHHHHHHCCCcEEEEcCC-cHHhHHHH---HHHcCCC
Q 029504 88 RLSPGIDELVKKLKANNKNVYLISGG-FRHMINPI---ASVLGIP 128 (192)
Q Consensus 88 ~~~~~~~e~l~~l~~~g~~~~IvS~~-~~~~~~~~---l~~~g~~ 128 (192)
.+.-|..+.++.+++...+++|+.++ +..+...+ .+..+++
T Consensus 11 kl~~G~~~v~kai~~gkaklViiA~D~~~~~~~~i~~~c~~~~Vp 55 (82)
T PRK13602 11 SIVIGTKQTVKALKRGSVKEVVVAEDADPRLTEKVEALANEKGVP 55 (82)
T ss_pred CEEEcHHHHHHHHHcCCeeEEEEECCCCHHHHHHHHHHHHHcCCC
Confidence 57789999999999887777666544 44443333 3455665
No 319
>PF13580 SIS_2: SIS domain; PDB: 1TK9_C 2I22_B 2I2W_A 1X92_A 3BJZ_D 2XBL_B 2X3Y_F 2YVA_B 3CVJ_D 3TRJ_D ....
Probab=28.47 E-value=71 Score=22.00 Aligned_cols=24 Identities=25% Similarity=0.361 Sum_probs=19.1
Q ss_pred CChhHHHHHHHHHHCCCcEEEEcC
Q 029504 89 LSPGIDELVKKLKANNKNVYLISG 112 (192)
Q Consensus 89 ~~~~~~e~l~~l~~~g~~~~IvS~ 112 (192)
-.|-+.+.+++.|++|.+++.+|+
T Consensus 115 ~s~~vi~a~~~Ak~~G~~vIalTg 138 (138)
T PF13580_consen 115 NSPNVIEAAEEAKERGMKVIALTG 138 (138)
T ss_dssp -SHHHHHHHHHHHHTT-EEEEEEE
T ss_pred CCHHHHHHHHHHHHCCCEEEEEeC
Confidence 357899999999999999988874
No 320
>PF01976 DUF116: Protein of unknown function DUF116; InterPro: IPR002829 These archaeal and bacterial proteins have no known function. Members of this family contain seven conserved cysteines and may also be an integral membrane protein.
Probab=28.40 E-value=71 Score=22.91 Aligned_cols=35 Identities=23% Similarity=0.261 Sum_probs=26.2
Q ss_pred hHHHHHHHHHHCCCcEEEEcCCcHHhHHHHHHHcCCC
Q 029504 92 GIDELVKKLKANNKNVYLISGGFRHMINPIASVLGIP 128 (192)
Q Consensus 92 ~~~e~l~~l~~~g~~~~IvS~~~~~~~~~~l~~~g~~ 128 (192)
.+-++.+..++.|++++|+|++.. ++.+++....+
T Consensus 74 ~Ig~l~~lae~~g~~v~i~~Ggt~--ar~~ik~~~p~ 108 (158)
T PF01976_consen 74 DIGDLKKLAEKYGYKVYIATGGTL--ARKIIKEYRPK 108 (158)
T ss_pred chhHHHHHHHHcCCEEEEEcChHH--HHHHHHHhCCC
Confidence 477889999999999999998843 45555554443
No 321
>COG0263 ProB Glutamate 5-kinase [Amino acid transport and metabolism]
Probab=28.13 E-value=74 Score=26.13 Aligned_cols=24 Identities=25% Similarity=0.308 Sum_probs=20.4
Q ss_pred hhHHHHHHHHHHCCCcEEEEcCCc
Q 029504 91 PGIDELVKKLKANNKNVYLISGGF 114 (192)
Q Consensus 91 ~~~~e~l~~l~~~g~~~~IvS~~~ 114 (192)
....+.+..|++.|+.++|||++-
T Consensus 31 ~~l~~~ia~L~~~G~eVilVSSGA 54 (369)
T COG0263 31 EELVRQVAALHKAGHEVVLVSSGA 54 (369)
T ss_pred HHHHHHHHHHHhCCCEEEEEccch
Confidence 456677889999999999999884
No 322
>COG0602 NrdG Organic radical activating enzymes [Posttranslational modification, protein turnover, chaperones]
Probab=27.92 E-value=82 Score=23.72 Aligned_cols=29 Identities=28% Similarity=0.269 Sum_probs=24.1
Q ss_pred CCChhHHHHHHHHHHCCCcEEEEcCCcHH
Q 029504 88 RLSPGIDELVKKLKANNKNVYLISGGFRH 116 (192)
Q Consensus 88 ~~~~~~~e~l~~l~~~g~~~~IvS~~~~~ 116 (192)
...+++.++++.++++|+++.+=|++.-.
T Consensus 83 ~~~~~l~~Ll~~l~~~g~~~~lETngti~ 111 (212)
T COG0602 83 LLQPNLLELLELLKRLGFRIALETNGTIP 111 (212)
T ss_pred CCcccHHHHHHHHHhCCceEEecCCCCcc
Confidence 45678999999999999999999977433
No 323
>PRK01018 50S ribosomal protein L30e; Reviewed
Probab=27.86 E-value=1.4e+02 Score=19.40 Aligned_cols=42 Identities=19% Similarity=0.381 Sum_probs=28.9
Q ss_pred CCCChhHHHHHHHHHHCCCcEEEEcCCcHH-hHHHH---HHHcCCC
Q 029504 87 PRLSPGIDELVKKLKANNKNVYLISGGFRH-MINPI---ASVLGIP 128 (192)
Q Consensus 87 ~~~~~~~~e~l~~l~~~g~~~~IvS~~~~~-~~~~~---l~~~g~~ 128 (192)
..+.-|..++++.+++...+++|++++... ..+.+ .+..+++
T Consensus 15 gkl~~G~~~v~kai~~gkaklViiA~D~~~~~~~~i~~~c~~~~Ip 60 (99)
T PRK01018 15 GKVILGSKRTIKAIKLGKAKLVIVASNCPKDIKEDIEYYAKLSGIP 60 (99)
T ss_pred CCEEEcHHHHHHHHHcCCceEEEEeCCCCHHHHHHHHHHHHHcCCC
Confidence 358899999999999888888777665433 33333 3445665
No 324
>PRK13938 phosphoheptose isomerase; Provisional
Probab=27.81 E-value=96 Score=23.04 Aligned_cols=30 Identities=13% Similarity=0.048 Sum_probs=24.3
Q ss_pred CChhHHHHHHHHHHCCCcEEEEcCCcHHhH
Q 029504 89 LSPGIDELVKKLKANNKNVYLISGGFRHMI 118 (192)
Q Consensus 89 ~~~~~~e~l~~l~~~g~~~~IvS~~~~~~~ 118 (192)
-.+.+.+.++.++++|.+++.+|+.....+
T Consensus 125 ~t~~vi~a~~~Ak~~G~~vI~iT~~~~s~L 154 (196)
T PRK13938 125 NSMSVLRAAKTARELGVTVVAMTGESGGQL 154 (196)
T ss_pred CCHHHHHHHHHHHHCCCEEEEEeCCCCChh
Confidence 467788999999999999999998765433
No 325
>PF05988 DUF899: Bacterial protein of unknown function (DUF899); InterPro: IPR010296 This family consists of uncharacterised bacterial proteins of unknown function which are thioredoxin-like.
Probab=27.54 E-value=2.1e+02 Score=21.67 Aligned_cols=39 Identities=18% Similarity=0.214 Sum_probs=34.7
Q ss_pred hhHHHHHHHHHHCCCcEEEEcCCcHHhHHHHHHHcCCCC
Q 029504 91 PGIDELVKKLKANNKNVYLISGGFRHMINPIASVLGIPP 129 (192)
Q Consensus 91 ~~~~e~l~~l~~~g~~~~IvS~~~~~~~~~~l~~~g~~~ 129 (192)
.++.-.+..|.+++..+++||..+..-+..+.+..|...
T Consensus 93 D~~~g~l~hL~~rd~tfa~vSraP~~~i~afk~rmGW~~ 131 (211)
T PF05988_consen 93 DHIDGALRHLHARDTTFAVVSRAPLEKIEAFKRRMGWTF 131 (211)
T ss_pred hhhhhhHHHHHhCCceEEEEeCCCHHHHHHHHHhcCCCc
Confidence 445577889999999999999999999999999999885
No 326
>PRK10671 copA copper exporting ATPase; Provisional
Probab=26.99 E-value=44 Score=30.74 Aligned_cols=25 Identities=0% Similarity=-0.389 Sum_probs=20.3
Q ss_pred hHHHHHHhhcCCcEEecCCCcccchhHh
Q 029504 10 FVELERLLRNGLPGCLASLFIENNSCLI 37 (192)
Q Consensus 10 ~~~~~~~~~~~k~iifD~~~~DGTL~~~ 37 (192)
+....|.+...+.++|| .+|||+..
T Consensus 507 ~~~~le~l~~v~~v~fD---KTGTLT~g 531 (834)
T PRK10671 507 DADALQRASTLDTLVFD---KTGTLTEG 531 (834)
T ss_pred cHHHHHhhcCCCEEEEc---CCCccccC
Confidence 35566777789999999 99999763
No 327
>cd02971 PRX_family Peroxiredoxin (PRX) family; composed of the different classes of PRXs including many proteins originally known as bacterioferritin comigratory proteins (BCP), based on their electrophoretic mobility before their function was identified. PRXs are thiol-specific antioxidant (TSA) proteins also known as TRX peroxidases and alkyl hydroperoxide reductase C22 (AhpC) proteins. They confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either TRX, glutathione, trypanothione and AhpF. They are distinct from other peroxidases in that they have no cofactors such as metals or prosthetic groups. The first step of catalysis, common to all PRXs, is the nucleophilic attack by the catalytic cysteine (also known as the peroxidatic cysteine) on the peroxide leading to cleavage of the oxygen-oxygen bond and the formation of a
Probab=26.59 E-value=2e+02 Score=19.19 Aligned_cols=34 Identities=12% Similarity=0.042 Sum_probs=18.1
Q ss_pred hHHHHHHHHHHCCCcEEEEcCCcHHhHHHHHHHc
Q 029504 92 GIDELVKKLKANNKNVYLISGGFRHMINPIASVL 125 (192)
Q Consensus 92 ~~~e~l~~l~~~g~~~~IvS~~~~~~~~~~l~~~ 125 (192)
...+..+.+++.|..++.+|.+....++...+..
T Consensus 44 ~l~~~~~~~~~~~~~~i~is~d~~~~~~~~~~~~ 77 (140)
T cd02971 44 AFRDLAEEFAKGGAEVLGVSVDSPFSHKAWAEKE 77 (140)
T ss_pred HHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHhcc
Confidence 3344444555556666666655555555555544
No 328
>cd03013 PRX5_like Peroxiredoxin (PRX) family, PRX5-like subfamily; members are similar to the human protein, PRX5, a homodimeric TRX peroxidase, widely expressed in tissues and found cellularly in mitochondria, peroxisomes and the cytosol. The cellular location of PRX5 suggests that it may have an important antioxidant role in organelles that are major sources of reactive oxygen species (ROS), as well as a role in the control of signal transduction. PRX5 has been shown to reduce hydrogen peroxide, alkyl hydroperoxides and peroxynitrite. As with all other PRXs, the N-terminal peroxidatic cysteine of PRX5 is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Human PRX5 is able to resolve this intermediate by forming an intramolecular disulfide bond with its C-terminal cysteine (the resolving cysteine), which can then be reduced by TRX, just like an atypical 2-cys PRX. This resolving cysteine, however, is not conserved in other members of the subfamily. In such cases
Probab=26.35 E-value=2e+02 Score=20.21 Aligned_cols=37 Identities=27% Similarity=0.317 Sum_probs=27.8
Q ss_pred hhHHHHHHHHHHCCC-cEEEEcCCcHHhHHHHHHHcCC
Q 029504 91 PGIDELVKKLKANNK-NVYLISGGFRHMINPIASVLGI 127 (192)
Q Consensus 91 ~~~~e~l~~l~~~g~-~~~IvS~~~~~~~~~~l~~~g~ 127 (192)
++..+..+.+++.|. .++.+|.+..+..+...+..++
T Consensus 51 ~~~~~~~~~f~~~g~~~V~~iS~D~~~~~~~~~~~~~~ 88 (155)
T cd03013 51 PGYVENADELKAKGVDEVICVSVNDPFVMKAWGKALGA 88 (155)
T ss_pred HHHHHhHHHHHHCCCCEEEEEECCCHHHHHHHHHhhCC
Confidence 345556777888888 4888888888877778877776
No 329
>KOG2469 consensus IMP-GMP specific 5'-nucleotidase [Nucleotide transport and metabolism]
Probab=26.28 E-value=38 Score=28.24 Aligned_cols=17 Identities=12% Similarity=-0.122 Sum_probs=14.7
Q ss_pred hhcCCcEEecCCCcccchhH
Q 029504 17 LRNGLPGCLASLFIENNSCL 36 (192)
Q Consensus 17 ~~~~k~iifD~~~~DGTL~~ 36 (192)
+.++.++.|| ||+||..
T Consensus 24 l~~i~~~Gfd---mDyTL~~ 40 (424)
T KOG2469|consen 24 LENIGIVGFD---MDYTLAR 40 (424)
T ss_pred hhcCcEEeec---cccchhh
Confidence 4578999999 9999965
No 330
>cd01994 Alpha_ANH_like_IV This is a subfamily of Adenine nucleotide alpha hydrolases superfamily.Adeninosine nucleotide alpha hydrolases superfamily includes N type ATP PPases and ATP sulphurylases. It forms a apha/beta/apha fold which binds to Adenosine group. This subfamily of proteins is predicted to bind ATP. This domainhas a strongly conserved motif SGGKD at the N terminus.
Probab=26.16 E-value=2.7e+02 Score=20.52 Aligned_cols=24 Identities=4% Similarity=0.207 Sum_probs=15.9
Q ss_pred HHHHHHHHHcCCceEEEEeCCccchh
Q 029504 162 AAVQQIRKAHAYKVLAMIGDGATDLE 187 (192)
Q Consensus 162 ~~l~~~~~~~g~~~~~~iGDs~~Di~ 187 (192)
..+.++.++ |+ +.++.||-..|.+
T Consensus 79 ~~l~~~~~~-g~-~~vv~G~i~sd~~ 102 (194)
T cd01994 79 ELLRKLKEE-GV-DAVVFGAILSEYQ 102 (194)
T ss_pred HHHHHHHHc-CC-CEEEECccccHHH
Confidence 445555554 55 7888998887764
No 331
>cd02970 PRX_like2 Peroxiredoxin (PRX)-like 2 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a CXXC motif, similar to TRX. The second cysteine in the motif corresponds to the peroxidatic cysteine of PRX, however, these proteins do not contain the other two residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. TRXs alter the redox state of target proteins by catalyzing the reduction of their disulfide bonds via the CXXC motif using reducing equivalents derived from either NADPH or ferredoxins.
Probab=26.06 E-value=2e+02 Score=19.34 Aligned_cols=38 Identities=11% Similarity=0.129 Sum_probs=25.2
Q ss_pred hhHHHHHHHHHHCCCcEEEEcCCcHHhHHHHHHHcCCC
Q 029504 91 PGIDELVKKLKANNKNVYLISGGFRHMINPIASVLGIP 128 (192)
Q Consensus 91 ~~~~e~l~~l~~~g~~~~IvS~~~~~~~~~~l~~~g~~ 128 (192)
+.+.++.+.+++.|+.++.|+.+.........+..++.
T Consensus 44 ~~l~~~~~~~~~~~v~vv~V~~~~~~~~~~~~~~~~~~ 81 (149)
T cd02970 44 RALSKLLPELDALGVELVAVGPESPEKLEAFDKGKFLP 81 (149)
T ss_pred HHHHHHHHHHHhcCeEEEEEeCCCHHHHHHHHHhcCCC
Confidence 34445556666788888888877666666666666665
No 332
>PRK11557 putative DNA-binding transcriptional regulator; Provisional
Probab=26.04 E-value=1e+02 Score=23.95 Aligned_cols=33 Identities=9% Similarity=0.005 Sum_probs=25.7
Q ss_pred CChhHHHHHHHHHHCCCcEEEEcCCcHHhHHHH
Q 029504 89 LSPGIDELVKKLKANNKNVYLISGGFRHMINPI 121 (192)
Q Consensus 89 ~~~~~~e~l~~l~~~g~~~~IvS~~~~~~~~~~ 121 (192)
-.+.+.+.++.++++|.+++.+|+.....+...
T Consensus 187 ~~~~~~~~~~~ak~~ga~iI~IT~~~~s~la~~ 219 (278)
T PRK11557 187 ERRELNLAADEALRVGAKVLAITGFTPNALQQR 219 (278)
T ss_pred CCHHHHHHHHHHHHcCCCEEEEcCCCCCchHHh
Confidence 467788889999999999999998766544443
No 333
>PF06342 DUF1057: Alpha/beta hydrolase of unknown function (DUF1057); InterPro: IPR010463 This entry consists of proteins of unknown function which have an alpha/beta hydrolase fold.
Probab=25.64 E-value=2.3e+02 Score=22.70 Aligned_cols=63 Identities=13% Similarity=0.096 Sum_probs=38.8
Q ss_pred HhHHHHHHHcCCCCCcEEecceeEecCCeeeeccCCCCCcCCCCHHHHHHHHHHHcCC-ceEEEEeCCccc
Q 029504 116 HMINPIASVLGIPPENIFANQLLFKSSGEFLGFDANEPTSRSGGKAAAVQQIRKAHAY-KVLAMIGDGATD 185 (192)
Q Consensus 116 ~~~~~~l~~~g~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~K~~~l~~~~~~~g~-~~~~~iGDs~~D 185 (192)
.+++..++..|+. +++... .|.-......+....+..+..-+..+++++++ ..++++|-|..-
T Consensus 52 kYi~~~l~~~~iR---~I~iN~----PGf~~t~~~~~~~~~n~er~~~~~~ll~~l~i~~~~i~~gHSrGc 115 (297)
T PF06342_consen 52 KYIRPPLDEAGIR---FIGINY----PGFGFTPGYPDQQYTNEERQNFVNALLDELGIKGKLIFLGHSRGC 115 (297)
T ss_pred hhhhhHHHHcCeE---EEEeCC----CCCCCCCCCcccccChHHHHHHHHHHHHHcCCCCceEEEEeccch
Confidence 3788888888885 333221 11100011112222234677889999999998 889999998753
No 334
>TIGR00594 polc DNA-directed DNA polymerase III (polc). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=25.63 E-value=4e+02 Score=25.51 Aligned_cols=85 Identities=15% Similarity=0.069 Sum_probs=44.7
Q ss_pred HHHHHHHHHHCCCcEEEEcCCcHHhHHHHHHHcCCCCCcEEecceeEe---cCCeeeeccCCCCCcCCCCHHHHHHHHHH
Q 029504 93 IDELVKKLKANNKNVYLISGGFRHMINPIASVLGIPPENIFANQLLFK---SSGEFLGFDANEPTSRSGGKAAAVQQIRK 169 (192)
Q Consensus 93 ~~e~l~~l~~~g~~~~IvS~~~~~~~~~~l~~~g~~~~~~~~~~~~~~---~~g~~~~~~~~~~~~~~~~K~~~l~~~~~ 169 (192)
+-+++++.+++|+.+. .|..+..--.++=.+||...+-....+.+. +.++.+-++..- .+......+.++.+.+
T Consensus 345 V~D~v~~Ar~~gI~vG--pGRGSaAgSlVaY~LgIT~VDPl~~~LlFERFLnpeR~smPDIDi-Df~~~rR~eVi~Yv~~ 421 (1022)
T TIGR00594 345 VWDFIKWAKDHGIPVG--PGRGSAAGSLVAYALKITDIDPIKHGLLFERFLNPERISMPDIDI-DFCDERRDEVIEYVAD 421 (1022)
T ss_pred HHHHHHHHHHCCCeeC--CCCChHHHHHHHHHhcCCccCccccCCchhhccCCCCCCCCCCcc-ccccccHHHHHHHHHH
Confidence 4478999999997654 334444333344455665322233333332 112222212211 1222467888999999
Q ss_pred HcCCceEEEEe
Q 029504 170 AHAYKVLAMIG 180 (192)
Q Consensus 170 ~~g~~~~~~iG 180 (192)
+||-++|.-|+
T Consensus 422 kYG~~~VaqI~ 432 (1022)
T TIGR00594 422 KYGHDNVAQII 432 (1022)
T ss_pred HhCccCEEEEe
Confidence 99975555443
No 335
>cd04246 AAK_AK-DapG-like AAK_AK-DapG-like: Amino Acid Kinase Superfamily (AAK), AK-DapG-like; this CD includes the N-terminal catalytic aspartokinase (AK) domain of the diaminopimelate-sensitive aspartokinase isoenzyme AKI (DapG), a monofunctional enzymes found in Bacilli (Bacillus subtilis 168), Clostridia, and Actinobacteria bacterial species, as well as, the catalytic AK domain of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis 168, the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, and related isoenzymes. In Bacillus subtilis, the regulation of the diaminopimelate-lysine biosynthetic pathway involves dual control by diaminopimelate and lysine, effected through separate diaminopimelate- and lysine-sensitive aspartokinase isoenzymes. The role of the AKI isoenzyme is most likely to provide a constant level of aspartyl-beta-phosphate for the biosynthesis of diaminopimelate for peptidoglycan synthesis and dipicolinate during sporulati
Probab=25.61 E-value=1.2e+02 Score=23.08 Aligned_cols=23 Identities=17% Similarity=0.229 Sum_probs=15.8
Q ss_pred hhHHHHHHHHHHCCCcEEEEcCC
Q 029504 91 PGIDELVKKLKANNKNVYLISGG 113 (192)
Q Consensus 91 ~~~~e~l~~l~~~g~~~~IvS~~ 113 (192)
..+.+.+..+++.|.+++||+++
T Consensus 18 ~~~~~~i~~l~~~g~~~viV~sg 40 (239)
T cd04246 18 KRVAERIKKAVKKGYQVVVVVSA 40 (239)
T ss_pred HHHHHHHHHHHHcCCCEEEEECC
Confidence 45556667777778887777664
No 336
>PF05088 Bac_GDH: Bacterial NAD-glutamate dehydrogenase
Probab=25.22 E-value=1.4e+02 Score=29.68 Aligned_cols=69 Identities=25% Similarity=0.310 Sum_probs=45.9
Q ss_pred cCCcHHhHHHHHHHcCCCCCcEEecceeEecCCeeeeccCCCCCcCCCCHHHHHHHHHHHcCC------ceEEEEeCCcc
Q 029504 111 SGGFRHMINPIASVLGIPPENIFANQLLFKSSGEFLGFDANEPTSRSGGKAAAVQQIRKAHAY------KVLAMIGDGAT 184 (192)
Q Consensus 111 S~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~K~~~l~~~~~~~g~------~~~~~iGDs~~ 184 (192)
|+.++..++.+....|+-..+.|+ +|.-.|+++.+--....+==+.++....++|+ =.|+-|||-..
T Consensus 839 TAtfSD~AN~ia~~~gfWLgDAFA-------SGGS~GYDHK~mGITArGAWesvkrHFrelg~D~q~~~fTvvGiGDMsG 911 (1528)
T PF05088_consen 839 TATFSDIANEIAAEYGFWLGDAFA-------SGGSAGYDHKKMGITARGAWESVKRHFRELGIDIQTDPFTVVGIGDMSG 911 (1528)
T ss_pred cchHHHHHHHHHHHcCCCcchhhh-------cCCcCCCCchhhccchhhHHHHHHHHHHHhCCCcCCCceEEEEecCCCc
Confidence 777888999999999987666666 34444554433222221233457777777886 23899999988
Q ss_pred ch
Q 029504 185 DL 186 (192)
Q Consensus 185 Di 186 (192)
|+
T Consensus 912 DV 913 (1528)
T PF05088_consen 912 DV 913 (1528)
T ss_pred cc
Confidence 86
No 337
>PF06616 BsuBI_PstI_RE: BsuBI/PstI restriction endonuclease C-terminus; InterPro: IPR009528 There are four classes of restriction endonucleases: types I, II,III and IV. All types of enzymes recognise specific short DNA sequences and carry out the endonucleolytic cleavage of DNA to give specific double-stranded fragments with terminal 5'-phosphates. They differ in their recognition sequence, subunit composition, cleavage position, and cofactor requirements [, ], as summarised below: Type I enzymes (3.1.21.3 from EC) cleave at sites remote from recognition site; require both ATP and S-adenosyl-L-methionine to function; multifunctional protein with both restriction and methylase (2.1.1.72 from EC) activities. Type II enzymes (3.1.21.4 from EC) cleave within or at short specific distances from recognition site; most require magnesium; single function (restriction) enzymes independent of methylase. Type III enzymes (3.1.21.5 from EC) cleave at sites a short distance from recognition site; require ATP (but doesn't hydrolyse it); S-adenosyl-L-methionine stimulates reaction but is not required; exists as part of a complex with a modification methylase methylase (2.1.1.72 from EC). Type IV enzymes target methylated DNA. Type II restriction endonucleases (3.1.21.4 from EC) are components of prokaryotic DNA restriction-modification mechanisms that protect the organism against invading foreign DNA. These site-specific deoxyribonucleases catalyse the endonucleolytic cleavage of DNA to give specific double-stranded fragments with terminal 5'-phosphates. Of the 3000 restriction endonucleases that have been characterised, most are homodimeric or tetrameric enzymes that cleave target DNA at sequence-specific sites close to the recognition site. For homodimeric enzymes, the recognition site is usually a palindromic sequence 4-8 bp in length. Most enzymes require magnesium ions as a cofactor for catalysis. Although they can vary in their mode of recognition, many restriction endonucleases share a similar structural core comprising four beta-strands and one alpha-helix, as well as a similar mechanism of cleavage, suggesting a common ancestral origin []. However, there is still considerable diversity amongst restriction endonucleases [, ]. The target site recognition process triggers large conformational changes of the enzyme and the target DNA, leading to the activation of the catalytic centres. Like other DNA binding proteins, restriction enzymes are capable of non-specific DNA binding as well, which is the prerequisite for efficient target site location by facilitated diffusion. Non-specific binding usually does not involve interactions with the bases but only with the DNA backbone []. This entry represents the C terminus of bacterial enzymes similar to type II restriction endonucleases BsuBI and PstI (3.1.21.4 from EC). The enzymes of the BsuBI restriction/modification (R/M) system recognise the target sequence 5'CTGCAG and are functionally identical with those of the PstI R/M system [].; GO: 0000287 magnesium ion binding, 0003677 DNA binding, 0009036 Type II site-specific deoxyribonuclease activity, 0009307 DNA restriction-modification system; PDB: 2IXS_B.
Probab=25.12 E-value=67 Score=25.77 Aligned_cols=23 Identities=17% Similarity=0.265 Sum_probs=15.1
Q ss_pred HHHHHHHHHcCC-ceEEEEeCCcc
Q 029504 162 AAVQQIRKAHAY-KVLAMIGDGAT 184 (192)
Q Consensus 162 ~~l~~~~~~~g~-~~~~~iGDs~~ 184 (192)
.++++++.++.. ..|+|+||+.+
T Consensus 169 aIIEeFaprF~pg~~vLyvgDtg~ 192 (306)
T PF06616_consen 169 AIIEEFAPRFAPGPEVLYVGDTGD 192 (306)
T ss_dssp HHHHTHHHHHSTT-EEEEEE-SSS
T ss_pred HHHHHHHHhhCCCceEEEEcCCCC
Confidence 446666766655 79999999953
No 338
>PF08774 VRR_NUC: VRR-NUC domain; InterPro: IPR014883 This entry contains proteins with the VRR-NUC domain. It is associated with members of the PD-(D/E)XK nuclease superfamily, which include the type III restriction modification enzymes, for example StyLTI: (P40815 from SWISSPROT).; GO: 0016788 hydrolase activity, acting on ester bonds
Probab=25.03 E-value=1.4e+02 Score=19.08 Aligned_cols=27 Identities=30% Similarity=0.361 Sum_probs=23.6
Q ss_pred CCCChhHHHHHHHHHHCCCcEEEEcCC
Q 029504 87 PRLSPGIDELVKKLKANNKNVYLISGG 113 (192)
Q Consensus 87 ~~~~~~~~e~l~~l~~~g~~~~IvS~~ 113 (192)
..+.+.-.+.++.+++.|+.+.|+.+.
T Consensus 73 ~~ls~~Q~~~~~~l~~~G~~v~V~~~~ 99 (100)
T PF08774_consen 73 DRLSPNQKEWIDKLREAGFRVAVCRSV 99 (100)
T ss_pred CCcCHHHHHHHHHHHHCCCEEEEEEcc
Confidence 468899999999999999999998653
No 339
>PRK15482 transcriptional regulator MurR; Provisional
Probab=25.01 E-value=1.1e+02 Score=23.96 Aligned_cols=33 Identities=9% Similarity=-0.042 Sum_probs=26.0
Q ss_pred CCChhHHHHHHHHHHCCCcEEEEcCCcHHhHHH
Q 029504 88 RLSPGIDELVKKLKANNKNVYLISGGFRHMINP 120 (192)
Q Consensus 88 ~~~~~~~e~l~~l~~~g~~~~IvS~~~~~~~~~ 120 (192)
.-.+.+.++++.++++|.+++.+|+.....+..
T Consensus 193 g~t~~~~~~~~~a~~~g~~iI~IT~~~~s~la~ 225 (285)
T PRK15482 193 GSKKEIVLCAEAARKQGATVIAITSLADSPLRR 225 (285)
T ss_pred CCCHHHHHHHHHHHHCCCEEEEEeCCCCCchHH
Confidence 356788899999999999999999876654443
No 340
>PRK05673 dnaE DNA polymerase III subunit alpha; Validated
Probab=24.71 E-value=5.1e+02 Score=25.19 Aligned_cols=84 Identities=17% Similarity=0.130 Sum_probs=43.7
Q ss_pred HHHHHHHHHHCCCcEEEEcCCcHHhHHHHHHHcCCCCCcEEecceeEe---cCCeeeeccCCCCCcCCCCHHHHHHHHHH
Q 029504 93 IDELVKKLKANNKNVYLISGGFRHMINPIASVLGIPPENIFANQLLFK---SSGEFLGFDANEPTSRSGGKAAAVQQIRK 169 (192)
Q Consensus 93 ~~e~l~~l~~~g~~~~IvS~~~~~~~~~~l~~~g~~~~~~~~~~~~~~---~~g~~~~~~~~~~~~~~~~K~~~l~~~~~ 169 (192)
+-+++++.+++|+++. .|..+..--.++=.+||...+-....+.+. +.++.+-++..- .+......+.++.+.+
T Consensus 341 V~D~i~~Ak~~gI~vG--pGRGSaAGSLVaY~LgIT~vDPl~y~LlFERFLNpeR~smPDIDi-Df~~~rR~eVi~Yv~~ 417 (1135)
T PRK05673 341 VADFIQWAKDNGIPVG--PGRGSGAGSLVAYALGITDLDPLRFGLLFERFLNPERVSMPDFDI-DFCQDRRDEVIRYVAE 417 (1135)
T ss_pred HHHHHHHHHHCCCeeC--CCCchHHHHHHHHHhcCCccCccccCCCceeecCCCCCCCCCCCC-cCccccHHHHHHHHHH
Confidence 4478999999997764 334343333333455555322233333332 122222222211 1222467888999999
Q ss_pred HcCCceEEEE
Q 029504 170 AHAYKVLAMI 179 (192)
Q Consensus 170 ~~g~~~~~~i 179 (192)
+||-++|.-|
T Consensus 418 kYG~~~VaqI 427 (1135)
T PRK05673 418 KYGRDAVAQI 427 (1135)
T ss_pred HhCcccEEEE
Confidence 9997444443
No 341
>TIGR02886 spore_II_AA anti-sigma F factor antagonist. The anti-sigma F factor antagonist, also called stage II sporulation protein AA, is a protein universal among endospore-forming bacteria, all of which belong to the Firmcutes
Probab=24.60 E-value=2e+02 Score=18.36 Aligned_cols=36 Identities=17% Similarity=0.177 Sum_probs=27.0
Q ss_pred HHHHHHHHHCCCcEEEEcCCcHHhHHHHHHHcCCCCCcEE
Q 029504 94 DELVKKLKANNKNVYLISGGFRHMINPIASVLGIPPENIF 133 (192)
Q Consensus 94 ~e~l~~l~~~g~~~~IvS~~~~~~~~~~l~~~g~~~~~~~ 133 (192)
..+.+.++++|..+.++.- ...+...++..|+. +++
T Consensus 61 ~~~~~~~~~~g~~l~l~~~--~~~v~~~l~~~gl~--~~~ 96 (106)
T TIGR02886 61 LGRYKKIKNEGGEVIVCNV--SPAVKRLFELSGLF--KII 96 (106)
T ss_pred HHHHHHHHHcCCEEEEEeC--CHHHHHHHHHhCCc--eEE
Confidence 3567788889999998864 34567788888887 555
No 342
>PRK13936 phosphoheptose isomerase; Provisional
Probab=24.57 E-value=1.1e+02 Score=22.48 Aligned_cols=32 Identities=9% Similarity=0.102 Sum_probs=24.2
Q ss_pred CChhHHHHHHHHHHCCCcEEEEcCCcHHhHHH
Q 029504 89 LSPGIDELVKKLKANNKNVYLISGGFRHMINP 120 (192)
Q Consensus 89 ~~~~~~e~l~~l~~~g~~~~IvS~~~~~~~~~ 120 (192)
-.+.+.++++.++++|.+++.+|+.....+..
T Consensus 123 ~t~~~~~~~~~ak~~g~~iI~IT~~~~s~l~~ 154 (197)
T PRK13936 123 NSANVIQAIQAAHEREMHVVALTGRDGGKMAS 154 (197)
T ss_pred CcHHHHHHHHHHHHCCCeEEEEECCCCChhhh
Confidence 35678888999999999998888865544444
No 343
>KOG1123 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, 3'-5' helicase subunit SSL2 [Transcription; Replication, recombination and repair]
Probab=24.55 E-value=2.2e+02 Score=25.03 Aligned_cols=70 Identities=20% Similarity=0.286 Sum_probs=40.4
Q ss_pred HHHHHHHCCCcEEEEcCCcHHhHHHHHHHcCCCCCcEEecceeEecCCeeeeccCCCCCcCCCCHHHHHHHHHHHcCC-c
Q 029504 96 LVKKLKANNKNVYLISGGFRHMINPIASVLGIPPENIFANQLLFKSSGEFLGFDANEPTSRSGGKAAAVQQIRKAHAY-K 174 (192)
Q Consensus 96 ~l~~l~~~g~~~~IvS~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~K~~~l~~~~~~~g~-~ 174 (192)
+|+++.++|-+++|.|.+.- .++..+=.+|-+ .+++.. +. .....+++.+. ++. -
T Consensus 535 LI~~HE~RgDKiIVFsDnvf-ALk~YAikl~Kp--fIYG~T------------------sq-~ERm~ILqnFq--~n~~v 590 (776)
T KOG1123|consen 535 LIKFHERRGDKIIVFSDNVF-ALKEYAIKLGKP--FIYGPT------------------SQ-NERMKILQNFQ--TNPKV 590 (776)
T ss_pred HHHHHHhcCCeEEEEeccHH-HHHHHHHHcCCc--eEECCC------------------ch-hHHHHHHHhcc--cCCcc
Confidence 58888889999888887744 444444446665 444422 11 12334444332 222 2
Q ss_pred eEEE---EeCCccchhhh
Q 029504 175 VLAM---IGDGATDLEVS 189 (192)
Q Consensus 175 ~~~~---iGDs~~Di~~a 189 (192)
++++ |||..-|++-|
T Consensus 591 NTIFlSKVgDtSiDLPEA 608 (776)
T KOG1123|consen 591 NTIFLSKVGDTSIDLPEA 608 (776)
T ss_pred ceEEEeeccCccccCCcc
Confidence 4444 69999998865
No 344
>cd07043 STAS_anti-anti-sigma_factors Sulphate Transporter and Anti-Sigma factor antagonist) domain of anti-anti-sigma factors, key regulators of anti-sigma factors by phosphorylation. Anti-anti-sigma factors play an important role in the regulation of several sigma factors and their corresponding anti-sigma factors. Upon dephosphorylation they bind the anti-sigma factor and induce the release of the sigma factor from the anti-sigma factor. In a feedback mechanism the anti-anti-sigma factor can be inactivated via phosphorylation by the anti-sigma factor. Well studied examples from Bacillus subtilis are SpoIIAA (regulating sigmaF and sigmaC which play an important role in sporulation) and RsbV (regulating sigmaB involved in the general stress response). The STAS domain is also found in the C- terminal region of sulphate transporters and stressosomes.
Probab=24.47 E-value=1.8e+02 Score=17.90 Aligned_cols=35 Identities=11% Similarity=0.186 Sum_probs=25.8
Q ss_pred hHHHHHHHHHHCCCcEEEEcCCcHHhHHHHHHHcCCC
Q 029504 92 GIDELVKKLKANNKNVYLISGGFRHMINPIASVLGIP 128 (192)
Q Consensus 92 ~~~e~l~~l~~~g~~~~IvS~~~~~~~~~~l~~~g~~ 128 (192)
-+.++.+.++++|..+.++..+ ..+...++..|+.
T Consensus 58 ~L~~l~~~~~~~g~~v~i~~~~--~~~~~~l~~~gl~ 92 (99)
T cd07043 58 VLLGAYKRARAAGGRLVLVNVS--PAVRRVLELTGLD 92 (99)
T ss_pred HHHHHHHHHHHcCCeEEEEcCC--HHHHHHHHHhCcc
Confidence 3456677888889887777654 3668888888886
No 345
>TIGR01942 pcnB poly(A) polymerase. This model describes the pcnB family of poly(A) polymerases (also known as plasmid copy number protein). These enzymes sequentially add adenosine nucleotides to the 3' end of RNAs, targeting them for degradation by the cell. This was originally described for anti-sense RNAs, but was later demonstrated for mRNAs as well. Members of this family are as yet limited to the gamma- and beta-proteobacteria, with putative members in the Chlamydiacae and spirochetes. This family has homology to tRNA nucleotidyltransferase (cca).
Probab=24.29 E-value=83 Score=26.41 Aligned_cols=30 Identities=23% Similarity=0.488 Sum_probs=25.2
Q ss_pred CCChhHHHHHHHHHHCCCcEEEEcCCcHHh
Q 029504 88 RLSPGIDELVKKLKANNKNVYLISGGFRHM 117 (192)
Q Consensus 88 ~~~~~~~e~l~~l~~~g~~~~IvS~~~~~~ 117 (192)
.+.+.+..+++.|++.|+..|||-|..+..
T Consensus 13 ~i~~~a~~Vl~~L~~~G~~aYlVGG~VRDl 42 (410)
T TIGR01942 13 SFSAHALNVVERLKGAGYQAYIVGGAVRDL 42 (410)
T ss_pred HCCHHHHHHHHHHHHCCCcEEEECHHHHHH
Confidence 467899999999999999999987776554
No 346
>cd01453 vWA_transcription_factor_IIH_type Transcription factors IIH type: TFIIH is a multiprotein complex that is one of the five general transcription factors that binds RNA polymerase II holoenzyme. Orthologues of these genes are found in all completed eukaryotic genomes and all these proteins contain a VWA domain. The p44 subunit of TFIIH functions as a DNA helicase in RNA polymerase II transcription initiation and DNA repair, and its transcriptional activity is dependent on its C-terminal Zn-binding domains. The function of the vWA domain is unclear, but may be involved in complex assembly. The MIDAS motif is not conserved in this sub-group.
Probab=24.28 E-value=1.8e+02 Score=21.07 Aligned_cols=33 Identities=30% Similarity=0.296 Sum_probs=18.0
Q ss_pred HHHHHHHHHHCCCcEEEEcCC-cHHhHHHHHHHc
Q 029504 93 IDELVKKLKANNKNVYLISGG-FRHMINPIASVL 125 (192)
Q Consensus 93 ~~e~l~~l~~~g~~~~IvS~~-~~~~~~~~l~~~ 125 (192)
+.++.+.++++|++++++.=+ ....++.+.+..
T Consensus 125 ~~~~~~~l~~~~I~v~~IgiG~~~~~L~~ia~~t 158 (183)
T cd01453 125 IYETIDKLKKENIRVSVIGLSAEMHICKEICKAT 158 (183)
T ss_pred HHHHHHHHHHcCcEEEEEEechHHHHHHHHHHHh
Confidence 445666677777776666533 233344444443
No 347
>PF08541 ACP_syn_III_C: 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal ; InterPro: IPR013747 This domain is found on 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III 2.3.1.41 from EC, the enzyme responsible for initiating the chain of reactions of the fatty acid synthase in plants and bacteria. ; GO: 0016747 transferase activity, transferring acyl groups other than amino-acyl groups, 0008610 lipid biosynthetic process; PDB: 3IL3_A 1ZOW_C 3GWE_B 3GWA_B 1UB7_B 3LED_B 2EBD_A 1HNJ_A 2EFT_B 1HN9_B ....
Probab=24.14 E-value=1.2e+02 Score=18.80 Aligned_cols=67 Identities=19% Similarity=0.333 Sum_probs=38.8
Q ss_pred CCCcEEEEcCCcHHhHHHHHHHcCCCCCcEEecceeEecCCeeeeccCCCCCcCCCCHHHHHHHHHHHcCC---ceEEEE
Q 029504 103 NNKNVYLISGGFRHMINPIASVLGIPPENIFANQLLFKSSGEFLGFDANEPTSRSGGKAAAVQQIRKAHAY---KVLAMI 179 (192)
Q Consensus 103 ~g~~~~IvS~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~K~~~l~~~~~~~g~---~~~~~i 179 (192)
..+..+|.........+.+.+.+|++.+.+..+.-.+ |... ..+-...+.+..++-.+ +.++++
T Consensus 9 ~did~~i~hq~~~~~~~~~~~~lgi~~~~~~~~~~~~---Gn~~----------sa~~~~~L~~~~~~g~~~~Gd~vl~~ 75 (90)
T PF08541_consen 9 DDIDHFIPHQASKKILDSIAKRLGIPPERFPDNLAEY---GNTG----------SASIPINLADALEEGRIKPGDRVLLV 75 (90)
T ss_dssp GGESEEEE-SSSHHHHHHHHHHHTS-GGGBE-THHHH----B-G----------GGHHHHHHHHHHHTTSSCTTEEEEEE
T ss_pred HHCCEEEeCCCCHHHHHHHHHHcCCcHHHHHHHHhcc---Ccch----------hhhHHHHHHHHHHcCCCCCCCEEEEE
Confidence 3467788888888899999999999876555433211 2111 12456677777774323 566665
Q ss_pred eCC
Q 029504 180 GDG 182 (192)
Q Consensus 180 GDs 182 (192)
|=|
T Consensus 76 ~~G 78 (90)
T PF08541_consen 76 GFG 78 (90)
T ss_dssp EEE
T ss_pred EEE
Confidence 533
No 348
>cd05398 NT_ClassII-CCAase Nucleotidyltransferase (NT) domain of ClassII CCA-adding enzymes. CCA-adding enzymes add the sequence [cytidine(C)-cytidine-adenosine (A)], one nucleotide at a time, onto the 3' end of tRNA, in a template-independent reaction. This Class II group is comprised mainly of eubacterial and eukaryotic enzymes and includes Bacillus stearothermophilus CCAase, Escherichia coli poly(A) polymerase I, human mitochondrial CCAase, and Saccharomyces cerevisiae CCAase (CCA1). CCA-adding enzymes have a single catalytic pocket, which recognizes both ATP and CTP substrates. Included in this subgroup are CC- and A-adding enzymes from various ancient species of bacteria such as Aquifex aeolicus; these enzymes collaborate to add CCA to tRNAs. This family belongs to the Pol beta-like NT superfamily. In the majority of enzymes in this superfamily, two carboxylates, Dx[D/E], together with a third more distal carboxylate, coordinate two divalent metal cations involved in a two-metal io
Probab=24.05 E-value=1.3e+02 Score=20.90 Aligned_cols=27 Identities=30% Similarity=0.651 Sum_probs=18.8
Q ss_pred hhHHHHHHHHHHC-CCcEEEEcCCcHHh
Q 029504 91 PGIDELVKKLKAN-NKNVYLISGGFRHM 117 (192)
Q Consensus 91 ~~~~e~l~~l~~~-g~~~~IvS~~~~~~ 117 (192)
+.+..+++.+++. |.++++|-+..+..
T Consensus 2 ~~~~~il~~l~~~~g~~~ylVGG~VRD~ 29 (139)
T cd05398 2 PELLKLLRELKKALGYEAYLVGGAVRDL 29 (139)
T ss_pred HHHHHHHHHHHhccCceEEEECChHHHH
Confidence 4567777888887 88888776655443
No 349
>PF13380 CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5A_A 2D59_A 2E6U_X 1IUL_A 1IUK_A 1Y81_A 2DUW_A.
Probab=23.92 E-value=1.8e+02 Score=19.40 Aligned_cols=40 Identities=20% Similarity=0.151 Sum_probs=26.6
Q ss_pred CChhHHHHHHHHHHCCCcEE-EEcCCcHHhHHHHHHHcCCC
Q 029504 89 LSPGIDELVKKLKANNKNVY-LISGGFRHMINPIASVLGIP 128 (192)
Q Consensus 89 ~~~~~~e~l~~l~~~g~~~~-IvS~~~~~~~~~~l~~~g~~ 128 (192)
+.+.+.++++.+.+.|.+.+ +.++....-+...++..|+.
T Consensus 64 ~~~~~~~~v~~~~~~g~~~v~~~~g~~~~~~~~~a~~~gi~ 104 (116)
T PF13380_consen 64 PPDKVPEIVDEAAALGVKAVWLQPGAESEELIEAAREAGIR 104 (116)
T ss_dssp -HHHHHHHHHHHHHHT-SEEEE-TTS--HHHHHHHHHTT-E
T ss_pred CHHHHHHHHHHHHHcCCCEEEEEcchHHHHHHHHHHHcCCE
Confidence 44578889999999998865 45666667778888888884
No 350
>PF13686 DrsE_2: DsrE/DsrF/DrsH-like family; PDB: 2QS7_C 3PNX_C.
Probab=23.84 E-value=78 Score=22.38 Aligned_cols=47 Identities=21% Similarity=0.412 Sum_probs=29.9
Q ss_pred HHHHHHhCCCCCChhHHHHHHHHHHCCCcEEEEcCCcHHhHHHHHHHcCCCCCcEEec
Q 029504 78 VQDFLEKRPPRLSPGIDELVKKLKANNKNVYLISGGFRHMINPIASVLGIPPENIFAN 135 (192)
Q Consensus 78 ~~~~~~~~~~~~~~~~~e~l~~l~~~g~~~~IvS~~~~~~~~~~l~~~g~~~~~~~~~ 135 (192)
+.+.+++. -.|.+.|+++.+++.|++++.++ -.++.+|+..++.++.
T Consensus 81 ~k~~mk~~---~v~sl~eLl~~a~e~GVk~~AC~--------msmdlmgi~kedLid~ 127 (148)
T PF13686_consen 81 MKKMMKKK---GVPSLEELLEMAKELGVKFYACS--------MSMDLMGIKKEDLIDG 127 (148)
T ss_dssp HHHHHHHC---T---HHHHHHHHHHCCEEEEEEH--------HHHHHCT--GGGB-TT
T ss_pred HHHHHHHc---CCCCHHHHHHHHHHCCCEEEEeh--------hhHHHhCCCHHHcccC
Confidence 44455554 44789999999999999999985 3466778876555443
No 351
>PRK11337 DNA-binding transcriptional repressor RpiR; Provisional
Probab=23.43 E-value=1.2e+02 Score=23.64 Aligned_cols=32 Identities=19% Similarity=0.248 Sum_probs=24.8
Q ss_pred CChhHHHHHHHHHHCCCcEEEEcCCcHHhHHH
Q 029504 89 LSPGIDELVKKLKANNKNVYLISGGFRHMINP 120 (192)
Q Consensus 89 ~~~~~~e~l~~l~~~g~~~~IvS~~~~~~~~~ 120 (192)
-.+.+.++++.++++|.+++.+|+.....+..
T Consensus 199 ~t~~~~~~~~~ak~~g~~ii~IT~~~~s~la~ 230 (292)
T PRK11337 199 RTSDVIEAVELAKKNGAKIICITNSYHSPIAK 230 (292)
T ss_pred CCHHHHHHHHHHHHCCCeEEEEeCCCCChhHH
Confidence 45678888999999999999998876654444
No 352
>PRK05672 dnaE2 error-prone DNA polymerase; Validated
Probab=23.36 E-value=3.9e+02 Score=25.64 Aligned_cols=84 Identities=13% Similarity=0.139 Sum_probs=44.7
Q ss_pred HHHHHHHHHHCCCcEEEEcCCcHHhHHHHHHHcCCCCCcEEecceeEec---CCeeeeccCCCCCcCCCCHHHHHHHHHH
Q 029504 93 IDELVKKLKANNKNVYLISGGFRHMINPIASVLGIPPENIFANQLLFKS---SGEFLGFDANEPTSRSGGKAAAVQQIRK 169 (192)
Q Consensus 93 ~~e~l~~l~~~g~~~~IvS~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~---~g~~~~~~~~~~~~~~~~K~~~l~~~~~ 169 (192)
+-+++++.+++|+.+ -|..+..--.++=.+||...+-....+.+.. .++.+-++.. ..+......+.++.+.+
T Consensus 335 V~D~i~~Ak~~gi~v---pGRGSaAGSLVaY~LgIT~VDPl~~~LlFERFLnpeR~smPDID-iDf~~~rR~~Vi~Yv~~ 410 (1046)
T PRK05672 335 VHDIVRFARSQGILC---QGRGSAANSAVCYALGITEVDPVQSGLLFERFLSPERDEPPDID-VDFEHDRREEVIQYVYR 410 (1046)
T ss_pred HHHHHHHHHHCCcee---CCCChHHHHHHHHHhCCCccCccccCCchhhccCCcccCCCcee-eecccccHHHHHHHHHH
Confidence 458899999999874 4444444334444566653222333333320 1111111111 11222467888999999
Q ss_pred HcCCceEEEEe
Q 029504 170 AHAYKVLAMIG 180 (192)
Q Consensus 170 ~~g~~~~~~iG 180 (192)
+||-++|.-||
T Consensus 411 kYG~~~VaqI~ 421 (1046)
T PRK05672 411 RYGRDRAAQVA 421 (1046)
T ss_pred HhCcccEEEEe
Confidence 99976655554
No 353
>TIGR00190 thiC thiamine biosynthesis protein ThiC. The thiC ortholog is designated thiA in Bacillus subtilis.
Probab=23.21 E-value=2.6e+02 Score=23.55 Aligned_cols=21 Identities=29% Similarity=0.343 Sum_probs=15.3
Q ss_pred HHHHHHHHHHcCCceEEEEeCCc
Q 029504 161 AAAVQQIRKAHAYKVLAMIGDGA 183 (192)
Q Consensus 161 ~~~l~~~~~~~g~~~~~~iGDs~ 183 (192)
...+.+++++|. -++-.||+.
T Consensus 205 fD~lLeI~~~yD--VtlSLGDgl 225 (423)
T TIGR00190 205 FDYILEIAKEYD--VTLSLGDGL 225 (423)
T ss_pred HHHHHHHHHHhC--eeeeccCCc
Confidence 455667777764 789999985
No 354
>PRK02947 hypothetical protein; Provisional
Probab=23.15 E-value=1.2e+02 Score=23.36 Aligned_cols=26 Identities=15% Similarity=0.068 Sum_probs=22.9
Q ss_pred CChhHHHHHHHHHHCCCcEEEEcCCc
Q 029504 89 LSPGIDELVKKLKANNKNVYLISGGF 114 (192)
Q Consensus 89 ~~~~~~e~l~~l~~~g~~~~IvS~~~ 114 (192)
-.+.+.++++.++++|.+++.+|+..
T Consensus 118 ~t~~~i~~~~~a~~~g~~vI~iT~~~ 143 (246)
T PRK02947 118 RNPVPIEMALEAKERGAKVIAVTSLA 143 (246)
T ss_pred CCHHHHHHHHHHHHCCCEEEEEcCCc
Confidence 45779999999999999999999875
No 355
>TIGR00761 argB acetylglutamate kinase. This model describes N-acetylglutamate kinases (ArgB) of many prokaryotes and the N-acetylglutamate kinase domains of multifunctional proteins from yeasts. This enzyme is the second step in the "acetylated" ornithine biosynthesis pathway. A related group of enzymes representing the first step of the pathway contain a homologous domain and are excluded from this model.
Probab=22.93 E-value=2.3e+02 Score=21.34 Aligned_cols=37 Identities=27% Similarity=0.376 Sum_probs=24.6
Q ss_pred hhHHHHHHHHHHCCCcEEEEcCCcHHhHHHHHHHcCCC
Q 029504 91 PGIDELVKKLKANNKNVYLISGGFRHMINPIASVLGIP 128 (192)
Q Consensus 91 ~~~~e~l~~l~~~g~~~~IvS~~~~~~~~~~l~~~g~~ 128 (192)
..+.+.+..+++.|.+++||+++.. ++...++.+++.
T Consensus 16 ~~~~~~i~~l~~~g~~~VlVhggg~-~~~~~~~~~~~~ 52 (231)
T TIGR00761 16 EAFASDIAFLRAVGIKPVIVHGGGP-EINELLEALGIP 52 (231)
T ss_pred HHHHHHHHHHHHcCCCEEEEcCCcH-HHHHHHHHcCCC
Confidence 3455556677788888888877643 456666666654
No 356
>PRK10886 DnaA initiator-associating protein DiaA; Provisional
Probab=22.84 E-value=1.1e+02 Score=22.69 Aligned_cols=31 Identities=13% Similarity=0.064 Sum_probs=23.6
Q ss_pred ChhHHHHHHHHHHCCCcEEEEcCCcHHhHHH
Q 029504 90 SPGIDELVKKLKANNKNVYLISGGFRHMINP 120 (192)
Q Consensus 90 ~~~~~e~l~~l~~~g~~~~IvS~~~~~~~~~ 120 (192)
.+.+.+.++.+|++|.+++.+|+.....+..
T Consensus 122 s~~v~~a~~~Ak~~G~~vI~IT~~~~s~l~~ 152 (196)
T PRK10886 122 SRDIVKAVEAAVTRDMTIVALTGYDGGELAG 152 (196)
T ss_pred CHHHHHHHHHHHHCCCEEEEEeCCCCChhhh
Confidence 5668888889999999988888876644333
No 357
>smart00481 POLIIIAc DNA polymerase alpha chain like domain. DNA polymerase alpha chain like domain, incl. family of hypothetical proteins
Probab=22.68 E-value=1.3e+02 Score=17.51 Aligned_cols=23 Identities=26% Similarity=0.186 Sum_probs=19.4
Q ss_pred hHHHHHHHHHHCCCcEEEEcCCc
Q 029504 92 GIDELVKKLKANNKNVYLISGGF 114 (192)
Q Consensus 92 ~~~e~l~~l~~~g~~~~IvS~~~ 114 (192)
...++++.++++|++.+.+|.-.
T Consensus 16 ~~~~~~~~a~~~g~~~v~iTDh~ 38 (67)
T smart00481 16 SPEELVKRAKELGLKAIAITDHG 38 (67)
T ss_pred CHHHHHHHHHHcCCCEEEEeeCC
Confidence 36789999999999999888654
No 358
>TIGR00288 conserved hypothetical protein TIGR00288. This family of orthologs is restricted to but universal among the completed archaeal genomes so far. Eubacterial proteins showing at least local homology include slr1870 from Synechocystis PCC6803 and two proteins from Aquifex aeolicusr, none of which is characterized.
Probab=22.62 E-value=3e+02 Score=19.84 Aligned_cols=17 Identities=12% Similarity=0.344 Sum_probs=10.1
Q ss_pred HHHHHHHCCCcEEEEcC
Q 029504 96 LVKKLKANNKNVYLISG 112 (192)
Q Consensus 96 ~l~~l~~~g~~~~IvS~ 112 (192)
+.+.++..|+...+..|
T Consensus 71 l~~~l~~~Gf~pv~~kG 87 (160)
T TIGR00288 71 LIEAVVNQGFEPIIVAG 87 (160)
T ss_pred HHHHHHHCCceEEEecC
Confidence 45566666766555544
No 359
>PRK15381 pathogenicity island 2 effector protein SseJ; Provisional
Probab=22.53 E-value=54 Score=27.48 Aligned_cols=14 Identities=29% Similarity=0.446 Sum_probs=12.7
Q ss_pred CceEEEEeCCccch
Q 029504 173 YKVLAMIGDGATDL 186 (192)
Q Consensus 173 ~~~~~~iGDs~~Di 186 (192)
+..+++||||..|.
T Consensus 142 ~~ai~vFGDSlsDt 155 (408)
T PRK15381 142 ITRLVFFGDSLSDS 155 (408)
T ss_pred CCeEEEeCCccccC
Confidence 37899999999997
No 360
>PRK13352 thiamine biosynthesis protein ThiC; Provisional
Probab=22.51 E-value=2.7e+02 Score=23.54 Aligned_cols=21 Identities=29% Similarity=0.297 Sum_probs=15.2
Q ss_pred HHHHHHHHHHcCCceEEEEeCCc
Q 029504 161 AAAVQQIRKAHAYKVLAMIGDGA 183 (192)
Q Consensus 161 ~~~l~~~~~~~g~~~~~~iGDs~ 183 (192)
...+.+++++|. -++-.||+.
T Consensus 208 fD~lLeI~~~yD--VtlSLGDgl 228 (431)
T PRK13352 208 FDYLLEILKEYD--VTLSLGDGL 228 (431)
T ss_pred HHHHHHHHHHhC--eeeeccCCc
Confidence 455666777764 789999985
No 361
>PRK06826 dnaE DNA polymerase III DnaE; Reviewed
Probab=22.48 E-value=5e+02 Score=25.29 Aligned_cols=84 Identities=15% Similarity=0.101 Sum_probs=43.4
Q ss_pred HHHHHHHHHHCCCcEEEEcCCcHHhHHHHHHHcCCCCCcEEecceeEe---cCCeeeeccCCCCCcCCCCHHHHHHHHHH
Q 029504 93 IDELVKKLKANNKNVYLISGGFRHMINPIASVLGIPPENIFANQLLFK---SSGEFLGFDANEPTSRSGGKAAAVQQIRK 169 (192)
Q Consensus 93 ~~e~l~~l~~~g~~~~IvS~~~~~~~~~~l~~~g~~~~~~~~~~~~~~---~~g~~~~~~~~~~~~~~~~K~~~l~~~~~ 169 (192)
+-+++++.+++|+++. .|..+..--.++=.+||...+-....+.+. +.++.+-++.. ..+......+.++.+.+
T Consensus 341 V~D~i~~Ak~~gI~vG--pGRGSaAGSLVaY~LgIT~VDPl~y~LlFERFLNpeR~smPDID-iDf~~~rR~eVi~Yv~~ 417 (1151)
T PRK06826 341 VWDFIRFARENGIMVG--PGRGSAAGSLVAYTLGITKIDPIKYNLLFERFLNPERVSMPDID-IDFCYERRQEVIDYVVE 417 (1151)
T ss_pred HHHHHHHHHHCCCeeC--CCcccHHHHHHHHHhCCCccCccccCCCeeeecCCCCCCCCCee-ccCccccHHHHHHHHHH
Confidence 4478999999987765 333333333333455555322233333332 11111111111 11222467888999999
Q ss_pred HcCCceEEEE
Q 029504 170 AHAYKVLAMI 179 (192)
Q Consensus 170 ~~g~~~~~~i 179 (192)
+||-++|.-|
T Consensus 418 kYG~~~VaqI 427 (1151)
T PRK06826 418 KYGKDRVAQI 427 (1151)
T ss_pred HhCccCEEEE
Confidence 9997454444
No 362
>PRK07374 dnaE DNA polymerase III subunit alpha; Validated
Probab=22.48 E-value=4.5e+02 Score=25.64 Aligned_cols=85 Identities=15% Similarity=0.087 Sum_probs=43.4
Q ss_pred HHHHHHHHHHCCCcEEEEcCCcHHhHHHHHHHcCCCCCcEEecceeEe---cCCeeeeccCCCCCcCCCCHHHHHHHHHH
Q 029504 93 IDELVKKLKANNKNVYLISGGFRHMINPIASVLGIPPENIFANQLLFK---SSGEFLGFDANEPTSRSGGKAAAVQQIRK 169 (192)
Q Consensus 93 ~~e~l~~l~~~g~~~~IvS~~~~~~~~~~l~~~g~~~~~~~~~~~~~~---~~g~~~~~~~~~~~~~~~~K~~~l~~~~~ 169 (192)
+-+++++.+++|+++. .|..+..--.++=.+||...+-....+.+. +.++.+-++..- .+......+.++.+.+
T Consensus 352 V~D~i~~Ak~~gI~vG--PGRGSaAGSLVaY~LgIT~VDPl~y~LlFERFLNpeR~smPDIDi-Df~~~rR~eVi~Yv~~ 428 (1170)
T PRK07374 352 VWDYIRFAREQGIPVG--PGRGSAAGSLVAYALGITNIDPVKNGLLFERFLNPERKSMPDIDT-DFCIERRGEVIDYVTR 428 (1170)
T ss_pred HHHHHHHHHHCCCeeC--CCCchHHHHHHHHHhcCCccCccccCCchhhccCCCCCCCCCccc-ccccccHHHHHHHHHH
Confidence 4478999999997654 333333333333355555322233333332 112222211111 1222467788999999
Q ss_pred HcCCceEEEEe
Q 029504 170 AHAYKVLAMIG 180 (192)
Q Consensus 170 ~~g~~~~~~iG 180 (192)
+||-++|.-|+
T Consensus 429 kYG~~~VaqI~ 439 (1170)
T PRK07374 429 RYGEDKVAQII 439 (1170)
T ss_pred HhCcccEEEEE
Confidence 99975554443
No 363
>cd03334 Fab1_TCP TCP-1 like domain of the eukaryotic phosphatidylinositol 3-phosphate (PtdIns3P) 5-kinase Fab1. Fab1p is important for vacuole size regulation, presumably by modulating PtdIns(3,5)P2 effector activity. In the human homolog p235/PIKfyve deletion of this domain leads to loss of catalytic activity. However no exact function this domain has been defined. In general, chaperonins are involved in productive folding of proteins.
Probab=22.41 E-value=2e+02 Score=22.33 Aligned_cols=38 Identities=18% Similarity=0.273 Sum_probs=29.9
Q ss_pred hhHHHHHHHHHHCCCcEEEEcCCcHHhHHHHHHHcCCC
Q 029504 91 PGIDELVKKLKANNKNVYLISGGFRHMINPIASVLGIP 128 (192)
Q Consensus 91 ~~~~e~l~~l~~~g~~~~IvS~~~~~~~~~~l~~~g~~ 128 (192)
..+.+.++.+.+.|..+++++.+....+..++...|+.
T Consensus 117 ~~l~~~v~kI~~~g~nvIl~~k~I~~~a~~~l~k~gI~ 154 (261)
T cd03334 117 EYLKNLVSRIVALRPDVILVEKSVSRIAQDLLLEAGIT 154 (261)
T ss_pred HHHHHHHHHHHhcCCCEEEECCccCHHHHHHHHHCCCE
Confidence 45677788888889999888888888777777777764
No 364
>PRK11543 gutQ D-arabinose 5-phosphate isomerase; Provisional
Probab=22.34 E-value=1.3e+02 Score=23.89 Aligned_cols=34 Identities=12% Similarity=0.180 Sum_probs=26.6
Q ss_pred CChhHHHHHHHHHHCCCcEEEEcCCcHHhHHHHH
Q 029504 89 LSPGIDELVKKLKANNKNVYLISGGFRHMINPIA 122 (192)
Q Consensus 89 ~~~~~~e~l~~l~~~g~~~~IvS~~~~~~~~~~l 122 (192)
-.+.+.+.++.++++|.+++.+|+.....+....
T Consensus 101 ~t~~~~~~~~~ak~~g~~vI~iT~~~~s~la~~a 134 (321)
T PRK11543 101 GAKELDLIIPRLEDKSIALLAMTGKPTSPLGLAA 134 (321)
T ss_pred CcHHHHHHHHHHHHcCCeEEEEECCCCChhHHhC
Confidence 4577899999999999999999987655444433
No 365
>PRK02261 methylaspartate mutase subunit S; Provisional
Probab=22.22 E-value=2.8e+02 Score=19.21 Aligned_cols=46 Identities=11% Similarity=0.163 Sum_probs=30.0
Q ss_pred CCChhHHHHHHHHHHCCC-cE-EEEcCCc------HHhHHHHHHHcCCCCCcEEec
Q 029504 88 RLSPGIDELVKKLKANNK-NV-YLISGGF------RHMINPIASVLGIPPENIFAN 135 (192)
Q Consensus 88 ~~~~~~~e~l~~l~~~g~-~~-~IvS~~~------~~~~~~~l~~~g~~~~~~~~~ 135 (192)
+..+.++++++.|++.|. .+ +++.+.. .......++.+|++ .+|..
T Consensus 66 ~~~~~~~~~~~~L~~~~~~~~~i~vGG~~~~~~~~~~~~~~~l~~~G~~--~vf~~ 119 (137)
T PRK02261 66 HGEIDCRGLREKCIEAGLGDILLYVGGNLVVGKHDFEEVEKKFKEMGFD--RVFPP 119 (137)
T ss_pred cCHHHHHHHHHHHHhcCCCCCeEEEECCCCCCccChHHHHHHHHHcCCC--EEECc
Confidence 456788899999998854 22 3343332 33455677888987 77764
No 366
>PRK00994 F420-dependent methylenetetrahydromethanopterin dehydrogenase; Provisional
Probab=21.96 E-value=1.8e+02 Score=22.58 Aligned_cols=39 Identities=18% Similarity=0.204 Sum_probs=29.4
Q ss_pred ChhHHHHHHHHHHCCCcEEEEcCCcHHhHHHHHHHcCCC
Q 029504 90 SPGIDELVKKLKANNKNVYLISGGFRHMINPIASVLGIP 128 (192)
Q Consensus 90 ~~~~~e~l~~l~~~g~~~~IvS~~~~~~~~~~l~~~g~~ 128 (192)
.||=...=+.|+..|++++|+|.++..-...-++.-|+.
T Consensus 73 ~PGP~~ARE~l~~~~iP~IvI~D~p~~K~~d~l~~~g~G 111 (277)
T PRK00994 73 APGPKKAREILKAAGIPCIVIGDAPGKKVKDAMEEQGLG 111 (277)
T ss_pred CCCchHHHHHHHhcCCCEEEEcCCCccchHHHHHhcCCc
Confidence 455445555568889999999999887777888877775
No 367
>COG0041 PurE Phosphoribosylcarboxyaminoimidazole (NCAIR) mutase [Nucleotide transport and metabolism]
Probab=21.80 E-value=3.1e+02 Score=19.71 Aligned_cols=35 Identities=11% Similarity=0.129 Sum_probs=26.5
Q ss_pred CCChhHHHHHHHHHHCCCcEEEEcCCcHHhHHHHH
Q 029504 88 RLSPGIDELVKKLKANNKNVYLISGGFRHMINPIA 122 (192)
Q Consensus 88 ~~~~~~~e~l~~l~~~g~~~~IvS~~~~~~~~~~l 122 (192)
+-.+...++.+..+++|++++|.-++....+--..
T Consensus 41 RTPe~m~~ya~~a~~~g~~viIAgAGgAAHLPGmv 75 (162)
T COG0041 41 RTPEKMFEYAEEAEERGVKVIIAGAGGAAHLPGMV 75 (162)
T ss_pred CCHHHHHHHHHHHHHCCCeEEEecCcchhhcchhh
Confidence 34567888999999999999999888765544333
No 368
>PRK11382 frlB fructoselysine-6-P-deglycase; Provisional
Probab=21.66 E-value=1.4e+02 Score=24.21 Aligned_cols=34 Identities=9% Similarity=-0.048 Sum_probs=26.8
Q ss_pred ChhHHHHHHHHHHCCCcEEEEcCCcHHhHHHHHH
Q 029504 90 SPGIDELVKKLKANNKNVYLISGGFRHMINPIAS 123 (192)
Q Consensus 90 ~~~~~e~l~~l~~~g~~~~IvS~~~~~~~~~~l~ 123 (192)
.+++.+.++.++++|.+++.+|+.....+....+
T Consensus 105 T~e~i~al~~ak~~Ga~~I~IT~~~~S~L~~~ad 138 (340)
T PRK11382 105 TEEVIKALELGRACGALTAAFTKRADSPITSAAE 138 (340)
T ss_pred CHHHHHHHHHHHHcCCeEEEEECCCCChHHHhCC
Confidence 5679999999999999999999886655544443
No 369
>PRK13601 putative L7Ae-like ribosomal protein; Provisional
Probab=21.55 E-value=2.1e+02 Score=17.93 Aligned_cols=42 Identities=17% Similarity=0.146 Sum_probs=27.6
Q ss_pred CCCChhHHHHHHHHHHCCCcEEEEcCC-cHHhHHHHH---HHcCCC
Q 029504 87 PRLSPGIDELVKKLKANNKNVYLISGG-FRHMINPIA---SVLGIP 128 (192)
Q Consensus 87 ~~~~~~~~e~l~~l~~~g~~~~IvS~~-~~~~~~~~l---~~~g~~ 128 (192)
..+.-|..++++.+++...+++|+.++ .....+.+. +..+++
T Consensus 7 GKlv~G~~~vlkaIk~gkakLViiA~Da~~~~~k~i~~~c~~~~Vp 52 (82)
T PRK13601 7 SKRVVGAKQTLKAITNCNVLQVYIAKDAEEHVTKKIKELCEEKSIK 52 (82)
T ss_pred ccEEEchHHHHHHHHcCCeeEEEEeCCCCHHHHHHHHHHHHhCCCC
Confidence 346678999999999877777666544 444444443 445555
No 370
>cd04336 YeaK YeaK is an uncharacterized Echerichia coli protein with a YbaK-like domain of unknown function. The YbaK-like domain family includes the INS amino acid-editing domain of the bacterial class II prolyl tRNA synthetase (ProRS), and it's trans-acting homologs, YbaK, and ProX. The primary function of INS is to hydrolyze mischarged cysteinyl-tRNA(Pro)'s, thus helping ensure the fidelity of translation. Organisms whose ProRS lacks the INS domain express a single-domain INS homolog such as YbaK, ProX, or PrdX which supplies the function of INS in trans.
Probab=21.39 E-value=2.9e+02 Score=19.12 Aligned_cols=48 Identities=13% Similarity=0.035 Sum_probs=35.8
Q ss_pred HHHHHHHHCCCcEEEEcCCcHHhHHHHHHHcCCCCCcEEecceeEecC
Q 029504 95 ELVKKLKANNKNVYLISGGFRHMINPIASVLGIPPENIFANQLLFKSS 142 (192)
Q Consensus 95 e~l~~l~~~g~~~~IvS~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~ 142 (192)
++.+.|.+.|++.-+++......++...+.+|.+.+.++.+.+.-++.
T Consensus 3 ~v~~~L~~~~i~y~~~~~~~~~t~~~~a~~~~~~~~~~~Ktll~~~~~ 50 (153)
T cd04336 3 RLQELLNTNGARFRVLDHPPEGTSEEVAAIRGTELGQGAKALLCKVKD 50 (153)
T ss_pred HHHHHHHHCCCCEEEEecCCCCCHHHHHHHhCCCcccceEEEEEEecC
Confidence 567778899999988887777788888888888876666655544433
No 371
>COG0528 PyrH Uridylate kinase [Nucleotide transport and metabolism]
Probab=21.33 E-value=2.1e+02 Score=22.14 Aligned_cols=37 Identities=22% Similarity=0.229 Sum_probs=25.0
Q ss_pred hHHHHHHHHHHCCCcEEEEcCCcHHhHHHHHHHcCCC
Q 029504 92 GIDELVKKLKANNKNVYLISGGFRHMINPIASVLGIP 128 (192)
Q Consensus 92 ~~~e~l~~l~~~g~~~~IvS~~~~~~~~~~l~~~g~~ 128 (192)
.+...|+.+.+.|+.++||.++..-.-.......|++
T Consensus 32 ~~a~~i~~~~~~g~eV~iVvGGGni~Rg~~~~~~g~~ 68 (238)
T COG0528 32 RIANEIKELVDLGVEVAVVVGGGNIARGYIGAAAGMD 68 (238)
T ss_pred HHHHHHHHHHhcCcEEEEEECCCHHHHhHHHHHcCCc
Confidence 3455678888899999999988655544444333554
No 372
>KOG0781 consensus Signal recognition particle receptor, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=21.33 E-value=1.2e+02 Score=26.30 Aligned_cols=26 Identities=23% Similarity=0.304 Sum_probs=20.8
Q ss_pred hHHHHHHHHHHCCCcEEEE-cCCcHHh
Q 029504 92 GIDELVKKLKANNKNVYLI-SGGFRHM 117 (192)
Q Consensus 92 ~~~e~l~~l~~~g~~~~Iv-S~~~~~~ 117 (192)
=+++.|++.+++|+.++++ |++.++.
T Consensus 454 vak~AI~~a~~~gfDVvLiDTAGR~~~ 480 (587)
T KOG0781|consen 454 VAKEAIQEARNQGFDVVLIDTAGRMHN 480 (587)
T ss_pred HHHHHHHHHHhcCCCEEEEeccccccC
Confidence 3678999999999999877 6776553
No 373
>PRK08392 hypothetical protein; Provisional
Probab=21.33 E-value=1.6e+02 Score=21.91 Aligned_cols=17 Identities=12% Similarity=0.223 Sum_probs=8.0
Q ss_pred HHHHHHHHCCCcEEEEc
Q 029504 95 ELVKKLKANNKNVYLIS 111 (192)
Q Consensus 95 e~l~~l~~~g~~~~IvS 111 (192)
++++.+++.|.++.+-|
T Consensus 165 ~~l~~~~~~G~~~~igS 181 (215)
T PRK08392 165 EFIRECIKRGIKLTFAS 181 (215)
T ss_pred HHHHHHHHcCCEEEEeC
Confidence 34555555555443333
No 374
>KOG2413 consensus Xaa-Pro aminopeptidase [Amino acid transport and metabolism]
Probab=21.31 E-value=35 Score=29.87 Aligned_cols=31 Identities=10% Similarity=0.120 Sum_probs=23.4
Q ss_pred cccccchHHHHHHhhcCCcEEecCC--Ccccch
Q 029504 4 LMNLRNFVELERLLRNGLPGCLASL--FIENNS 34 (192)
Q Consensus 4 ~~~~~~~~~~~~~~~~~k~iifD~~--~~DGTL 34 (192)
+-+..|..+.-......|+.++||| |+|||.
T Consensus 381 viHYsP~~e~n~~i~~~kiyL~DSGaQY~DGTT 413 (606)
T KOG2413|consen 381 VIHYSPPAETNRIVSPDKIYLCDSGAQYLDGTT 413 (606)
T ss_pred eeecCCCccccceecCceEEEEccCcccccCcc
Confidence 3455566655556667899999998 899998
No 375
>PRK06920 dnaE DNA polymerase III DnaE; Reviewed
Probab=21.31 E-value=4.8e+02 Score=25.28 Aligned_cols=84 Identities=14% Similarity=0.080 Sum_probs=43.1
Q ss_pred HHHHHHHHHHCCCcEEEEcCCcHHhHHHHHHHcCCCCCcEEecceeEe---cCCeeeeccCCCCCcCCCCHHHHHHHHHH
Q 029504 93 IDELVKKLKANNKNVYLISGGFRHMINPIASVLGIPPENIFANQLLFK---SSGEFLGFDANEPTSRSGGKAAAVQQIRK 169 (192)
Q Consensus 93 ~~e~l~~l~~~g~~~~IvS~~~~~~~~~~l~~~g~~~~~~~~~~~~~~---~~g~~~~~~~~~~~~~~~~K~~~l~~~~~ 169 (192)
+-+++++.+++|+++. .|..+..--.++=.+||...+-....+.+. +.++.+-++..- .+......+.++.+.+
T Consensus 326 V~D~i~~Ak~~gI~VG--PGRGSaAGSLVaY~LgIT~VDPl~y~LlFERFLNpeR~smPDIDi-DF~~~rR~eVi~Yv~~ 402 (1107)
T PRK06920 326 VWDFMKYAHENHILTG--PGRGSAAGSLVSYVLEITDIDPIEYDLLFERFLNPERVTLPDIDI-DFPDTRRDEMIRYVKD 402 (1107)
T ss_pred HHHHHHHHHHCCCEeC--CCcchHHHHHHHHHhCCCccCccccCCcHHhhcCCCCCCCCCccc-ccccccHHHHHHHHHH
Confidence 4478999999998765 333333333333455555322222233222 112222222211 1222467889999999
Q ss_pred HcCCceEEEE
Q 029504 170 AHAYKVLAMI 179 (192)
Q Consensus 170 ~~g~~~~~~i 179 (192)
+||-++|.-|
T Consensus 403 kYG~~~VaqI 412 (1107)
T PRK06920 403 KYGQLRVAQI 412 (1107)
T ss_pred HhCcccEEEE
Confidence 9997444433
No 376
>cd08612 GDPD_GDE4 Glycerophosphodiester phosphodiesterase domain of mammalian glycerophosphodiester phosphodiesterase GDE4 and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in mammalian GDE4 (also known as glycerophosphodiester phosphodiesterase domain-containing protein 1 (GDPD1)) and similar proteins. Mammalian GDE4 is a transmembrane protein whose cellular function has not yet been elucidated. It is expressed widely, including in placenta, liver, kidney, pancreas, spleen, thymus, ovary, small intestine and peripheral blood leukocytes. It is also expressed in the growth cones in neuroblastoma Neuro2a cells, which suggests GDE4 may play some distinct role from other members of the GDE family.
Probab=21.04 E-value=2.8e+02 Score=21.96 Aligned_cols=39 Identities=15% Similarity=0.140 Sum_probs=30.9
Q ss_pred HHHHHHHHHHCCCcEEEEcCCcHHhHHHHHHHcCCCCCcEEe
Q 029504 93 IDELVKKLKANNKNVYLISGGFRHMINPIASVLGIPPENIFA 134 (192)
Q Consensus 93 ~~e~l~~l~~~g~~~~IvS~~~~~~~~~~l~~~g~~~~~~~~ 134 (192)
..++++.+++.|+++++=|-+....++.+++ +|.+ -++.
T Consensus 250 ~~~~v~~~~~~G~~v~vWTVNd~~~~~~l~~-~GVd--gIiT 288 (300)
T cd08612 250 RPSLFRHLQKRGIQVYGWVLNDEEEFERAFE-LGAD--GVMT 288 (300)
T ss_pred CHHHHHHHHHCCCEEEEeecCCHHHHHHHHh-cCCC--EEEe
Confidence 3578999999999999999777777777776 7886 4444
No 377
>COG0587 DnaE DNA polymerase III, alpha subunit [DNA replication, recombination, and repair]
Probab=20.90 E-value=4.6e+02 Score=25.47 Aligned_cols=84 Identities=14% Similarity=0.154 Sum_probs=44.0
Q ss_pred HHHHHHHHHHCCCcEEEEcCC-cHHhHHHHHHHcCCCCCcEEecceeEe---cCCeeeeccCCCCCcCCCCHHHHHHHHH
Q 029504 93 IDELVKKLKANNKNVYLISGG-FRHMINPIASVLGIPPENIFANQLLFK---SSGEFLGFDANEPTSRSGGKAAAVQQIR 168 (192)
Q Consensus 93 ~~e~l~~l~~~g~~~~IvS~~-~~~~~~~~l~~~g~~~~~~~~~~~~~~---~~g~~~~~~~~~~~~~~~~K~~~l~~~~ 168 (192)
+-+++++.+++|+++.=-=|+ -...+...+.-.++++ ....+.+. +.++.+-++..-..+ .....+.++.+.
T Consensus 343 V~D~I~~Ak~~gI~vGPGRGSaAGSLVaY~L~IT~IDP---l~~~LLFERFLNpeR~smPDIDIDf~-~~rReeVI~YV~ 418 (1139)
T COG0587 343 VWDFIKFARDNGIPVGPGRGSAAGSLVAYALGITDIDP---LKYDLLFERFLNPERVSMPDIDIDFC-DERREEVIQYVY 418 (1139)
T ss_pred HHHHHHHHHHCCCccCCCCcchHHHHHHHHhcCCCcCc---cccCcchhhccCCCCCCCCCCCcCCc-cccHHHHHHHHH
Confidence 668999999999886522111 1112333344344432 22233222 122222222222222 246788999999
Q ss_pred HHcCC---ceEEEEe
Q 029504 169 KAHAY---KVLAMIG 180 (192)
Q Consensus 169 ~~~g~---~~~~~iG 180 (192)
++||- .+++-||
T Consensus 419 ekYG~d~VAqIiTFg 433 (1139)
T COG0587 419 EKYGRDRVAQIITFG 433 (1139)
T ss_pred HHhccccEEEEEeee
Confidence 99996 5666665
No 378
>PF01993 MTD: methylene-5,6,7,8-tetrahydromethanopterin dehydrogenase; InterPro: IPR002844 This archaeal enzyme family is involved in formation of methane from carbon dioxide 1.5.99.9 from EC. The enzyme requires coenzyme F420 [].; GO: 0008901 ferredoxin hydrogenase activity, 0015948 methanogenesis, 0055114 oxidation-reduction process; PDB: 1U6I_D 3IQF_G 1QV9_C 3IQE_F 1U6J_G 3IQZ_D 1U6K_B.
Probab=20.88 E-value=1.9e+02 Score=22.57 Aligned_cols=40 Identities=18% Similarity=0.135 Sum_probs=30.2
Q ss_pred CChhHHHHHHHHHHCCCcEEEEcCCcHHhHHHHHHHcCCC
Q 029504 89 LSPGIDELVKKLKANNKNVYLISGGFRHMINPIASVLGIP 128 (192)
Q Consensus 89 ~~~~~~e~l~~l~~~g~~~~IvS~~~~~~~~~~l~~~g~~ 128 (192)
-.||=...=+.+++.|++++|+|.++..-.+.-++.-|+.
T Consensus 71 ~~PGP~~ARE~l~~~~iP~IvI~D~p~~k~kd~l~~~g~G 110 (276)
T PF01993_consen 71 AAPGPTKAREMLSAKGIPCIVISDAPTKKAKDALEEEGFG 110 (276)
T ss_dssp TSHHHHHHHHHHHHSSS-EEEEEEGGGGGGHHHHHHTT-E
T ss_pred CCCCcHHHHHHHHhCCCCEEEEcCCCchhhHHHHHhcCCc
Confidence 4567666777778999999999998877777888887775
No 379
>PF00072 Response_reg: Response regulator receiver domain; InterPro: IPR001789 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. Bipartite response regulator proteins are involved in a two-component signal transduction system in bacteria, and certain eukaryotes like protozoa, that functions to detect and respond to environmental changes []. These systems have been detected during host invasion, drug resistance, motility, phosphate uptake, osmoregulation, and nitrogen fixation, amongst others []. The two-component system consists of a histidine protein kinase environmental sensor that phosphorylates the receiver domain of a response regulator protein; phosphorylation induces a conformational change in the response regulator, which activates the effector domain, triggering the cellular response []. The domains of the two-component proteins are highly modular, but the core structures and activities are maintained. The response regulators act as phosphorylation-activated switches to affect a cellular response, usually by transcriptional regulation. Most of these proteins consist of two domains, an N-terminal response regulator receiver domain, and a variable C-terminal effector domain with DNA-binding activity. This entry represents the response regulator receiver domain, which belongs to the CheY family, and receives the signal from the sensor partner in the two-component system.; GO: 0000156 two-component response regulator activity, 0000160 two-component signal transduction system (phosphorelay), 0006355 regulation of transcription, DNA-dependent; PDB: 2QR3_A 2QXY_A 1I3C_A 1JLK_A 2PKX_A 2PL1_A 3H1F_A 3H1E_A 3GWG_A 3H1G_A ....
Probab=20.87 E-value=2.3e+02 Score=17.72 Aligned_cols=44 Identities=11% Similarity=0.023 Sum_probs=27.9
Q ss_pred CChhHHHHHHHHHHCC--CcEEEEcCCcHHhHHHHHHHcCCCCCcEEe
Q 029504 89 LSPGIDELVKKLKANN--KNVYLISGGFRHMINPIASVLGIPPENIFA 134 (192)
Q Consensus 89 ~~~~~~e~l~~l~~~g--~~~~IvS~~~~~~~~~~l~~~g~~~~~~~~ 134 (192)
+.-...++++.+++.+ .+++++|+.........+-..|.. .++.
T Consensus 54 ~~~~~~~~~~~i~~~~~~~~ii~~t~~~~~~~~~~~~~~g~~--~~l~ 99 (112)
T PF00072_consen 54 PDGDGLELLEQIRQINPSIPIIVVTDEDDSDEVQEALRAGAD--DYLS 99 (112)
T ss_dssp SSSBHHHHHHHHHHHTTTSEEEEEESSTSHHHHHHHHHTTES--EEEE
T ss_pred ccccccccccccccccccccEEEecCCCCHHHHHHHHHCCCC--EEEE
Confidence 3346678888888865 778888866554333333367776 4544
No 380
>cd08555 PI-PLCc_GDPD_SF Catalytic domain of phosphoinositide-specific phospholipase C-like phosphodiesterases superfamily. The PI-PLC-like phosphodiesterases superfamily represents the catalytic domains of bacterial phosphatidylinositol-specific phospholipase C (PI-PLC, EC 4.6.1.13), eukaryotic phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11), glycerophosphodiester phosphodiesterases (GP-GDE, EC 3.1.4.46), sphingomyelinases D (SMases D) (sphingomyelin phosphodiesterase D, EC 3.1.4.41) from spider venom, SMases D-like proteins, and phospholipase D (PLD) from several pathogenic bacteria, as well as their uncharacterized homologs found in organisms ranging from bacteria and archaea to metazoans, plants, and fungi. PI-PLCs are ubiquitous enzymes hydrolyzing the membrane lipid phosphoinositides to yield two important second messengers, inositol phosphates and diacylglycerol (DAG). GP-GDEs play essential roles in glycerol metabolism and catalyze the hydrolysis of glycerophosph
Probab=20.77 E-value=2.9e+02 Score=19.80 Aligned_cols=35 Identities=17% Similarity=0.140 Sum_probs=28.0
Q ss_pred HHHHHHHHHHCCCcEEEEcCCc-HHhHHHHHHHcCCC
Q 029504 93 IDELVKKLKANNKNVYLISGGF-RHMINPIASVLGIP 128 (192)
Q Consensus 93 ~~e~l~~l~~~g~~~~IvS~~~-~~~~~~~l~~~g~~ 128 (192)
..++++.+++.|.++.+=|-+. ...++.+++ +|.+
T Consensus 138 ~~~~v~~~~~~g~~v~~wtvn~~~~~~~~l~~-~Gvd 173 (179)
T cd08555 138 DTELIASANKLGLLSRIWTVNDNNEIINKFLN-LGVD 173 (179)
T ss_pred CHHHHHHHHHCCCEEEEEeeCChHHHHHHHHH-cCCC
Confidence 4678999999999999999777 666776665 6775
No 381
>cd01578 AcnA_Mitochon_Swivel Mitochondrial aconitase A swivel domain. Aconitase (also known as aconitate hydratase and citrate hydro-lyase) catalyzes the reversible isomerization of citrate and isocitrate as part of the TCA cycle. This is the aconitase swivel domain, which undergoes swivelling conformational change in the enzyme mechanism. In eukaryotes two isozymes of aconitase are known to exist: one found in the mitochondrial matrix and the other found in the cytoplasm. This is the mitochondrial form. The mitochondrial product is coded by a nuclear gene. Most members of this subfamily are mitochondrial but there are some bacterial members.
Probab=20.76 E-value=3.2e+02 Score=19.45 Aligned_cols=43 Identities=19% Similarity=0.183 Sum_probs=32.4
Q ss_pred hhHHHHHHHHHHCCCcEEEE------cCCcHHhHHHHHHHcCCCCCcEEec
Q 029504 91 PGIDELVKKLKANNKNVYLI------SGGFRHMINPIASVLGIPPENIFAN 135 (192)
Q Consensus 91 ~~~~e~l~~l~~~g~~~~Iv------S~~~~~~~~~~l~~~g~~~~~~~~~ 135 (192)
+.+.+..+..++.|.+.+|| +++.++.+...+..+|+. -+++.
T Consensus 55 ~~~~~~A~~yk~~g~~~iIVaG~nyG~GSSREhAa~a~~~lGv~--aVIA~ 103 (149)
T cd01578 55 GPVPDTARDYKAHGIKWVVIGDENYGEGSSREHAALEPRHLGGR--AIITK 103 (149)
T ss_pred cchHHHHHHHHHcCCCeEEEccCccCCCCchHHHHHHHHHhCCC--EEEEe
Confidence 55667777888899887777 456788888888899997 45443
No 382
>cd06595 GH31_xylosidase_XylS-like This family represents an uncharacterized glycosyl hydrolase family 31 (GH31) enzyme found in bacteria and eukaryotes that is related to the XylS xylosidase of Sulfolobus solfataricus. Alpha-xylosidases catalyze the release of an alpha-xylose residue from the non-reducing end of alpha-xyloside substrates. Enzymes of the GH31 family possess a wide range of different hydrolytic activities including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=20.73 E-value=1.1e+02 Score=24.19 Aligned_cols=24 Identities=25% Similarity=0.349 Sum_probs=20.7
Q ss_pred CCChhHHHHHHHHHHCCCcEEEEc
Q 029504 88 RLSPGIDELVKKLKANNKNVYLIS 111 (192)
Q Consensus 88 ~~~~~~~e~l~~l~~~g~~~~IvS 111 (192)
.-+|+.+++++.|+++|+++.+..
T Consensus 71 ~~FPdp~~mi~~Lh~~G~k~v~~v 94 (292)
T cd06595 71 KLFPDPEKLLQDLHDRGLKVTLNL 94 (292)
T ss_pred hcCCCHHHHHHHHHHCCCEEEEEe
Confidence 467899999999999999987754
No 383
>PRK09532 DNA polymerase III subunit alpha; Reviewed
Probab=20.67 E-value=4.3e+02 Score=24.79 Aligned_cols=85 Identities=16% Similarity=0.062 Sum_probs=43.1
Q ss_pred HHHHHHHHHHCCCcEEEEcCCcHHhHHHHHHHcCCCCCcEEecceeEec---CCeeeeccCCCCCcCCCCHHHHHHHHHH
Q 029504 93 IDELVKKLKANNKNVYLISGGFRHMINPIASVLGIPPENIFANQLLFKS---SGEFLGFDANEPTSRSGGKAAAVQQIRK 169 (192)
Q Consensus 93 ~~e~l~~l~~~g~~~~IvS~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~---~g~~~~~~~~~~~~~~~~K~~~l~~~~~ 169 (192)
+-+++++.+++|+.+. .|..+..--.++=.+||...+-+...+.+.. .++..-++.. ..+......+.++.+.+
T Consensus 350 V~D~v~~Ar~~gi~VG--pGRGSAAGSLVaY~LgIT~VDPl~~~LlFERFLnpeR~~mPDID-iDf~~~rR~~Vi~Yv~e 426 (874)
T PRK09532 350 VWDYIKYARDNNIPVG--PGRGSAAGSLVAYCLKITNIDPVHHGLLFERFLNPERKSMPDID-TDFCIERRDEMIKYVTE 426 (874)
T ss_pred HHHHHHHHHhCCceec--CCcccHHHHHHHHHhcCCccCccccCCcHhhccCCcCCCCCCce-eecccccHHHHHHHHHH
Confidence 4478999999996654 3344433333334455553222233332210 1111111111 11222467788999999
Q ss_pred HcCCceEEEEe
Q 029504 170 AHAYKVLAMIG 180 (192)
Q Consensus 170 ~~g~~~~~~iG 180 (192)
+||.++|.-||
T Consensus 427 kYG~~~Va~I~ 437 (874)
T PRK09532 427 KYGEDRVAQII 437 (874)
T ss_pred HhCcccEEEEe
Confidence 99976665554
No 384
>KOG2594 consensus Uncharacterized conserved protein [Function unknown]
Probab=20.50 E-value=1.2e+02 Score=25.03 Aligned_cols=29 Identities=28% Similarity=0.413 Sum_probs=22.7
Q ss_pred CHHHHHHHHHHHcCCceEEEEeCCccchhh
Q 029504 159 GKAAAVQQIRKAHAYKVLAMIGDGATDLEV 188 (192)
Q Consensus 159 ~K~~~l~~~~~~~g~~~~~~iGDs~~Di~~ 188 (192)
-|-+.+++++.+.|+ +.+++||+..|+..
T Consensus 183 lk~kll~~vA~~~g~-~~i~~g~~~t~la~ 211 (396)
T KOG2594|consen 183 LKMKLLQKVAAENGY-NRIVLGDSTTDLAS 211 (396)
T ss_pred HHHHHHHHHHHHcCC-CEEEecCchhHHHH
Confidence 355667777778887 88999999999853
No 385
>cd05007 SIS_Etherase N-acetylmuramic acid 6-phosphate etherase. Members of this family contain the SIS (Sugar ISomerase) domain. The SIS domain is found in many phosphosugar isomerases and phosphosugar binding proteins. The bacterial cell wall sugar N-acetylmuramic acid carries a unique D-lactyl ether substituent at the C3 position. The etherase catalyzes the cleavage of the lactyl ether bond of N-acetylmuramic acid 6-phosphate.
Probab=20.48 E-value=1.6e+02 Score=22.79 Aligned_cols=32 Identities=9% Similarity=-0.058 Sum_probs=25.8
Q ss_pred CChhHHHHHHHHHHCCCcEEEEcCCcHHhHHH
Q 029504 89 LSPGIDELVKKLKANNKNVYLISGGFRHMINP 120 (192)
Q Consensus 89 ~~~~~~e~l~~l~~~g~~~~IvS~~~~~~~~~ 120 (192)
-.|.+.+.++.+++.|.+++.+|+.+...+..
T Consensus 130 ~T~~vi~al~~Ak~~Ga~~I~It~~~~s~L~~ 161 (257)
T cd05007 130 RTPYVLGALRYARARGALTIGIACNPGSPLLQ 161 (257)
T ss_pred CCHHHHHHHHHHHHCCCeEEEEECCCCChhHH
Confidence 36789999999999999999998877655444
No 386
>COG1225 Bcp Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=20.41 E-value=3.4e+02 Score=19.51 Aligned_cols=45 Identities=16% Similarity=0.135 Sum_probs=22.1
Q ss_pred HHCCCcEEEEcCCcHHhHHHHHHHcCCCCC---------cEEecceeEecCCeeeecc
Q 029504 101 KANNKNVYLISGGFRHMINPIASVLGIPPE---------NIFANQLLFKSSGEFLGFD 149 (192)
Q Consensus 101 ~~~g~~~~IvS~~~~~~~~~~l~~~g~~~~---------~~~~~~~~~~~~g~~~~~~ 149 (192)
.+.|.++-++|..... +.+.+|...+ -+.-..+.|+.+|.+-..+
T Consensus 83 ~k~~L~f~LLSD~~~~----v~~~ygv~~~k~~~gk~~~~~~R~TfvId~dG~I~~~~ 136 (157)
T COG1225 83 EKHGLTFPLLSDEDGE----VAEAYGVWGEKKMYGKEYMGIERSTFVIDPDGKIRYVW 136 (157)
T ss_pred HHhCCCceeeECCcHH----HHHHhCcccccccCccccccccceEEEECCCCeEEEEe
Confidence 3445666666655544 3333443221 1233456677777665433
No 387
>PF15649 Tox-REase-7: Restriction endonuclease fold toxin 7
Probab=20.37 E-value=1.7e+02 Score=18.68 Aligned_cols=26 Identities=23% Similarity=0.279 Sum_probs=22.9
Q ss_pred CCChhHHHHHHHHHHCCCcEEEEcCC
Q 029504 88 RLSPGIDELVKKLKANNKNVYLISGG 113 (192)
Q Consensus 88 ~~~~~~~e~l~~l~~~g~~~~IvS~~ 113 (192)
...+.++..+++++++|+++.++.+.
T Consensus 54 s~t~Qlr~~~~~A~~~G~~~~Lvv~~ 79 (87)
T PF15649_consen 54 SLTKQLRDYVKYAKENGYRFNLVVNH 79 (87)
T ss_pred cchHHHHHHHHHHHHcCCcEEEEEcC
Confidence 47789999999999999999888764
No 388
>PTZ00325 malate dehydrogenase; Provisional
Probab=20.23 E-value=2.7e+02 Score=22.52 Aligned_cols=46 Identities=20% Similarity=0.242 Sum_probs=31.0
Q ss_pred hhHHHHHHHHHHCCCc-EEEEcCCcHHhHHHHH-----HHcCCCCCcEEecc
Q 029504 91 PGIDELVKKLKANNKN-VYLISGGFRHMINPIA-----SVLGIPPENIFANQ 136 (192)
Q Consensus 91 ~~~~e~l~~l~~~g~~-~~IvS~~~~~~~~~~l-----~~~g~~~~~~~~~~ 136 (192)
+.++++++.+++.|.+ ++++++.+-..+-.+. +..|+++.++++..
T Consensus 103 ~i~~~i~~~i~~~~~~~iviv~SNPvdv~~~~~~~~~~~~sg~p~~~viG~g 154 (321)
T PTZ00325 103 PIVRDLVAAVASSAPKAIVGIVSNPVNSTVPIAAETLKKAGVYDPRKLFGVT 154 (321)
T ss_pred HHHHHHHHHHHHHCCCeEEEEecCcHHHHHHHHHhhhhhccCCChhheeech
Confidence 4678888899988865 5555666666555544 56677776776653
No 389
>cd06259 YdcF-like YdcF-like. YdcF-like is a large family of mainly bacterial proteins, with a few members found in fungi, plants, and archaea. Escherichia coli YdcF has been shown to bind S-adenosyl-L-methionine (AdoMet), but a biochemical function has not been idenitified. The family also includes Escherichia coli sanA and Salmonella typhimurium sfiX, which are involved in vancomycin resistance; sfiX may also be involved in murein synthesis.
Probab=20.16 E-value=3e+02 Score=18.82 Aligned_cols=76 Identities=16% Similarity=0.263 Sum_probs=44.0
Q ss_pred hhHHHHHHHHHHCCCcEEEEcCCcH--------HhHHHHHHHcCCCCCcEEecceeEecCCeeeeccCCCCCcCCCCHHH
Q 029504 91 PGIDELVKKLKANNKNVYLISGGFR--------HMINPIASVLGIPPENIFANQLLFKSSGEFLGFDANEPTSRSGGKAA 162 (192)
Q Consensus 91 ~~~~e~l~~l~~~g~~~~IvS~~~~--------~~~~~~l~~~g~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~K~~ 162 (192)
..+...++..++...+..|+|++.. ..+...+...|++.+.++- ++... .+ ..-+.
T Consensus 21 ~R~~~a~~l~~~~~~~~ii~sGg~~~~~~~~ea~~m~~~l~~~gv~~~~I~~-----e~~s~--------~T---~ena~ 84 (150)
T cd06259 21 ERLDAAAELYRAGPAPKLIVSGGQGPGEGYSEAEAMARYLIELGVPAEAILL-----EDRST--------NT---YENAR 84 (150)
T ss_pred HHHHHHHHHHHhCCCCEEEEcCCCCCCCCCCHHHHHHHHHHHcCCCHHHeee-----cCCCC--------CH---HHHHH
Confidence 4566677777777788999998843 3566677777775322222 11100 00 12244
Q ss_pred HHHHHHHHcCCceEEEEeCC
Q 029504 163 AVQQIRKAHAYKVLAMIGDG 182 (192)
Q Consensus 163 ~l~~~~~~~g~~~~~~iGDs 182 (192)
....++++.+.+.++.|-|.
T Consensus 85 ~~~~~~~~~~~~~i~lVTs~ 104 (150)
T cd06259 85 FSAELLRERGIRSVLLVTSA 104 (150)
T ss_pred HHHHHHHhcCCCeEEEECCH
Confidence 45566666666677777654
No 390
>COG1899 DYS1 Deoxyhypusine synthase [Posttranslational modification, protein turnover, chaperones]
Probab=20.11 E-value=2.9e+02 Score=22.36 Aligned_cols=41 Identities=24% Similarity=0.328 Sum_probs=31.1
Q ss_pred CCCChhHHHHHHHHHHCCCcEEEEcCCcHHhHHHHHHHcCCC
Q 029504 87 PRLSPGIDELVKKLKANNKNVYLISGGFRHMINPIASVLGIP 128 (192)
Q Consensus 87 ~~~~~~~~e~l~~l~~~g~~~~IvS~~~~~~~~~~l~~~g~~ 128 (192)
..+..|.++++.+|-++|+-=+|||.+-. .-+.+.+.+|.+
T Consensus 64 ~~vssGlR~iia~LIr~~~idvvVTTgg~-l~hDi~~~lg~~ 104 (318)
T COG1899 64 NLVSSGLREIIADLIRNGLIDVVVTTGGN-LDHDIIKALGGP 104 (318)
T ss_pred cccchhHHHHHHHHHHcCCeEEEEecCCc-hhHHHHHHcCCC
Confidence 35678999999999999976666654433 557788888876
No 391
>PF13034 DUF3895: Protein of unknown function (DUF3895)
Probab=20.01 E-value=1.7e+02 Score=18.34 Aligned_cols=29 Identities=21% Similarity=0.394 Sum_probs=24.8
Q ss_pred CCCChhHHHHHHHHHHCCCcEEEEcCCcH
Q 029504 87 PRLSPGIDELVKKLKANNKNVYLISGGFR 115 (192)
Q Consensus 87 ~~~~~~~~e~l~~l~~~g~~~~IvS~~~~ 115 (192)
+.++|.+--.|+.|.++|+-..+-+.+.+
T Consensus 44 pkiY~~Vc~yLe~L~~eg~l~~i~~~~~~ 72 (78)
T PF13034_consen 44 PKIYPYVCNYLEYLVKEGKLSFIENDGTR 72 (78)
T ss_pred ceeHHHHHHHHHHHHHCCeEEEEecCcch
Confidence 67999999999999999988888776644
Done!