Query 029506
Match_columns 192
No_of_seqs 278 out of 1644
Neff 5.5
Searched_HMMs 46136
Date Fri Mar 29 14:00:10 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029506.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/029506hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK00142 putative rhodanese-re 100.0 9.8E-38 2.1E-42 276.5 10.0 146 3-168 133-293 (314)
2 COG1054 Predicted sulfurtransf 100.0 4.3E-35 9.2E-40 256.8 3.7 139 3-169 134-286 (308)
3 PRK05320 rhodanese superfamily 100.0 2.8E-28 6.1E-33 210.9 9.4 107 3-126 137-256 (257)
4 PRK01415 hypothetical protein; 99.9 3.7E-25 8E-30 190.9 8.4 90 3-94 133-237 (247)
5 cd01518 RHOD_YceA Member of th 99.7 4.4E-17 9.5E-22 120.3 6.0 66 3-70 23-101 (101)
6 PLN02160 thiosulfate sulfurtra 99.6 1.7E-15 3.7E-20 119.3 7.6 72 3-76 35-127 (136)
7 cd01523 RHOD_Lact_B Member of 99.6 2E-15 4.4E-20 111.0 6.0 64 3-69 21-99 (100)
8 cd01533 4RHOD_Repeat_2 Member 99.6 1.8E-15 3.9E-20 113.2 5.7 68 3-72 32-109 (109)
9 COG0607 PspE Rhodanese-related 99.6 6.8E-15 1.5E-19 108.3 5.9 72 3-76 26-107 (110)
10 PRK00162 glpE thiosulfate sulf 99.5 1E-14 2.3E-19 108.9 6.3 75 3-79 26-107 (108)
11 cd01527 RHOD_YgaP Member of th 99.5 2.1E-14 4.5E-19 105.2 7.2 70 3-74 22-98 (99)
12 cd01526 RHOD_ThiF Member of th 99.5 2E-14 4.3E-19 110.0 5.7 71 3-75 30-118 (122)
13 cd01519 RHOD_HSP67B2 Member of 99.5 2.4E-14 5.1E-19 105.6 5.6 65 3-69 21-105 (106)
14 cd01534 4RHOD_Repeat_3 Member 99.5 2.4E-14 5.3E-19 104.6 5.0 64 3-69 22-94 (95)
15 cd01520 RHOD_YbbB Member of th 99.5 7.3E-14 1.6E-18 108.0 6.8 65 3-70 19-126 (128)
16 KOG1530 Rhodanese-related sulf 99.5 6E-14 1.3E-18 110.9 6.2 73 2-75 43-134 (136)
17 cd01529 4RHOD_Repeats Member o 99.5 6.6E-14 1.4E-18 102.3 5.7 65 3-69 18-95 (96)
18 cd01525 RHOD_Kc Member of the 99.5 6.8E-14 1.5E-18 103.1 5.7 65 3-69 22-104 (105)
19 cd01444 GlpE_ST GlpE sulfurtra 99.5 9.3E-14 2E-18 100.5 6.2 65 3-69 22-95 (96)
20 smart00450 RHOD Rhodanese Homo 99.5 1.7E-13 3.6E-18 97.3 7.3 70 3-74 10-100 (100)
21 cd01528 RHOD_2 Member of the R 99.4 2.4E-13 5.2E-18 100.2 6.9 67 3-71 23-99 (101)
22 cd01530 Cdc25 Cdc25 phosphatas 99.4 1.8E-13 3.9E-18 105.5 5.8 65 3-69 29-120 (121)
23 cd01521 RHOD_PspE2 Member of t 99.4 4.4E-13 9.4E-18 100.7 7.3 70 3-75 31-110 (110)
24 cd01447 Polysulfide_ST Polysul 99.4 3.2E-13 7E-18 98.6 5.9 67 3-71 20-102 (103)
25 cd01524 RHOD_Pyr_redox Member 99.4 3.9E-13 8.4E-18 97.3 6.1 64 3-69 19-89 (90)
26 cd01532 4RHOD_Repeat_1 Member 99.4 6.2E-13 1.3E-17 97.1 6.6 66 3-70 16-92 (92)
27 cd01522 RHOD_1 Member of the R 99.4 4.4E-13 9.5E-18 102.3 5.6 67 3-71 21-105 (117)
28 TIGR02981 phageshock_pspE phag 99.4 5.6E-13 1.2E-17 100.5 5.5 65 3-70 24-97 (101)
29 cd01535 4RHOD_Repeat_4 Member 99.4 1.2E-12 2.6E-17 104.2 6.6 72 3-76 17-95 (145)
30 cd01449 TST_Repeat_2 Thiosulfa 99.3 9.8E-13 2.1E-17 98.8 5.0 65 3-69 20-117 (118)
31 TIGR03865 PQQ_CXXCW PQQ-depend 99.3 1.8E-12 4E-17 105.0 6.7 48 27-75 114-162 (162)
32 PRK10287 thiosulfate:cyanide s 99.3 2.4E-12 5.2E-17 97.6 5.6 65 3-70 26-99 (104)
33 cd01448 TST_Repeat_1 Thiosulfa 99.3 3.1E-12 6.6E-17 97.0 6.1 67 3-71 21-121 (122)
34 cd00158 RHOD Rhodanese Homolog 99.3 4.1E-12 8.9E-17 89.3 6.0 65 3-69 16-89 (89)
35 cd01531 Acr2p Eukaryotic arsen 99.3 3.6E-12 7.7E-17 96.0 4.8 67 2-71 24-112 (113)
36 PRK08762 molybdopterin biosynt 99.3 5.8E-12 1.3E-16 113.8 6.9 71 3-75 23-102 (376)
37 PRK07878 molybdopterin biosynt 99.3 8.5E-12 1.8E-16 113.6 7.0 71 3-75 309-388 (392)
38 PRK07411 hypothetical protein; 99.2 1.1E-11 2.4E-16 113.0 5.9 70 3-75 305-386 (390)
39 cd01443 Cdc25_Acr2p Cdc25 enzy 99.2 1.5E-11 3.2E-16 92.8 4.9 64 3-69 29-112 (113)
40 PF00581 Rhodanese: Rhodanese- 99.2 2.4E-11 5.3E-16 88.9 5.3 67 3-71 19-113 (113)
41 PRK05597 molybdopterin biosynt 99.2 2.7E-11 5.8E-16 109.2 5.9 66 3-70 280-354 (355)
42 TIGR03167 tRNA_sel_U_synt tRNA 99.2 3.6E-11 7.8E-16 107.0 6.6 69 3-74 8-118 (311)
43 PRK05600 thiamine biosynthesis 99.1 6.5E-11 1.4E-15 107.4 4.5 62 3-66 292-369 (370)
44 PRK11784 tRNA 2-selenouridine 99.1 1.8E-10 4E-15 103.8 6.9 68 3-73 21-131 (345)
45 PRK11493 sseA 3-mercaptopyruva 98.9 7.9E-10 1.7E-14 96.1 5.0 72 3-76 174-278 (281)
46 PRK11493 sseA 3-mercaptopyruva 98.8 5.2E-09 1.1E-13 90.9 6.3 68 6-75 39-133 (281)
47 PLN02723 3-mercaptopyruvate su 98.8 5.3E-09 1.2E-13 92.9 6.0 71 3-75 211-315 (320)
48 PLN02723 3-mercaptopyruvate su 98.8 7.1E-09 1.5E-13 92.1 6.6 71 4-76 52-150 (320)
49 PRK09629 bifunctional thiosulf 98.8 1.4E-08 3E-13 97.8 7.1 71 3-75 30-127 (610)
50 cd01446 DSP_MapKP N-terminal r 98.7 2.8E-08 6E-13 76.7 6.4 69 2-72 22-128 (132)
51 PRK09629 bifunctional thiosulf 98.7 2.8E-08 6.2E-13 95.6 5.8 82 3-86 168-280 (610)
52 PRK01269 tRNA s(4)U8 sulfurtra 98.7 3.4E-08 7.5E-13 92.3 6.0 58 3-62 413-481 (482)
53 cd01445 TST_Repeats Thiosulfat 98.5 1.8E-07 3.9E-12 73.8 6.4 39 31-69 96-137 (138)
54 KOG2017 Molybdopterin synthase 98.2 8E-07 1.7E-11 80.8 2.6 73 2-75 338-423 (427)
55 COG2897 SseA Rhodanese-related 98.1 5.5E-06 1.2E-10 73.4 6.5 71 3-75 177-280 (285)
56 COG2897 SseA Rhodanese-related 97.4 0.00045 9.8E-09 61.3 6.8 69 6-75 42-136 (285)
57 KOG3772 M-phase inducer phosph 97.0 0.00087 1.9E-08 60.4 4.1 70 3-73 183-278 (325)
58 KOG1529 Mercaptopyruvate sulfu 93.6 0.16 3.5E-06 45.3 5.6 68 6-75 38-134 (286)
59 KOG1529 Mercaptopyruvate sulfu 93.0 0.2 4.3E-06 44.7 5.4 63 9-74 195-278 (286)
60 COG5105 MIH1 Mitotic inducer, 89.0 0.51 1.1E-05 43.3 4.0 67 4-71 270-358 (427)
61 TIGR01244 conserved hypothetic 87.6 0.63 1.4E-05 36.4 3.3 21 31-51 87-107 (135)
62 PF04273 DUF442: Putative phos 83.4 1.4 3E-05 33.7 3.3 19 31-49 87-105 (110)
63 COG2603 Predicted ATPase [Gene 81.3 0.7 1.5E-05 41.8 1.1 68 1-70 19-128 (334)
64 PF15645 Tox-PLDMTX: Dermonecr 80.4 1.5 3.2E-05 35.1 2.5 45 43-89 11-64 (135)
65 PF09992 DUF2233: Predicted pe 76.1 3.1 6.7E-05 33.1 3.3 41 27-68 98-143 (170)
66 PF01451 LMWPc: Low molecular 70.7 3.6 7.9E-05 31.4 2.4 36 33-68 1-41 (138)
67 PF04722 Ssu72: Ssu72-like pro 69.0 3 6.5E-05 35.4 1.7 52 31-85 2-54 (195)
68 cd00127 DSPc Dual specificity 67.3 6.4 0.00014 29.5 3.1 22 31-52 82-105 (139)
69 smart00195 DSPc Dual specifici 67.1 8.2 0.00018 29.2 3.7 25 31-55 79-106 (138)
70 PF14446 Prok-RING_1: Prokaryo 66.3 3.1 6.7E-05 28.4 1.0 31 114-155 5-35 (54)
71 PF11494 Ta0938: Ta0938; Inte 65.1 2.2 4.7E-05 32.6 0.1 35 114-152 14-48 (105)
72 PF04473 DUF553: Transglutamin 61.9 6.8 0.00015 31.8 2.4 46 43-90 82-130 (153)
73 TIGR02689 ars_reduc_gluta arse 60.7 17 0.00037 27.7 4.4 36 31-66 1-37 (126)
74 KOG2424 Protein involved in tr 58.3 10 0.00022 32.1 2.9 52 31-85 6-58 (195)
75 PRK15372 pathogenicity island 56.9 9.1 0.0002 34.0 2.5 49 37-87 142-203 (292)
76 PRK10126 tyrosine phosphatase; 54.9 17 0.00038 28.5 3.7 37 31-68 3-40 (147)
77 smart00226 LMWPc Low molecular 54.9 15 0.00033 28.1 3.3 36 33-68 1-37 (140)
78 PRK13530 arsenate reductase; P 54.6 26 0.00057 27.2 4.6 36 31-66 4-40 (133)
79 COG2888 Predicted Zn-ribbon RN 53.0 13 0.00027 26.0 2.2 47 114-160 9-57 (61)
80 cd00115 LMWPc Substituted upda 52.7 17 0.00037 28.0 3.2 37 32-68 2-40 (141)
81 PRK14890 putative Zn-ribbon RN 51.7 17 0.00036 25.3 2.6 45 114-160 7-55 (59)
82 COG2453 CDC14 Predicted protei 51.6 17 0.00036 29.6 3.2 25 31-55 106-133 (180)
83 PF12156 ATPase-cat_bd: Putati 51.1 10 0.00022 27.8 1.6 17 174-190 65-81 (88)
84 PF12368 DUF3650: Protein of u 47.8 5.7 0.00012 23.6 -0.1 12 158-169 1-12 (28)
85 COG3453 Uncharacterized protei 47.5 20 0.00043 28.6 2.8 17 31-47 88-104 (130)
86 PRK09590 celB cellobiose phosp 46.0 26 0.00056 26.5 3.2 36 31-67 2-41 (104)
87 PTZ00242 protein tyrosine phos 46.0 28 0.00061 28.1 3.6 24 31-54 99-124 (166)
88 TIGR00853 pts-lac PTS system, 44.1 30 0.00065 25.5 3.2 37 31-68 4-44 (95)
89 smart00291 ZnF_ZZ Zinc-binding 42.8 19 0.00042 22.8 1.8 32 115-150 5-36 (44)
90 PRK11391 etp phosphotyrosine-p 42.0 39 0.00084 26.6 3.8 37 31-68 3-40 (144)
91 cd00079 HELICc Helicase superf 41.9 45 0.00097 23.9 3.9 35 31-66 29-63 (131)
92 cd05565 PTS_IIB_lactose PTS_II 40.4 33 0.00072 25.7 3.0 36 32-68 2-41 (99)
93 PF13344 Hydrolase_6: Haloacid 39.8 9.8 0.00021 28.1 0.0 31 26-56 26-57 (101)
94 smart00012 PTPc_DSPc Protein t 38.8 33 0.00072 23.8 2.7 16 31-46 40-56 (105)
95 smart00404 PTPc_motif Protein 38.8 33 0.00072 23.8 2.7 16 31-46 40-56 (105)
96 TIGR02691 arsC_pI258_fam arsen 38.4 47 0.001 25.6 3.7 34 33-66 1-35 (129)
97 cd05564 PTS_IIB_chitobiose_lic 37.9 38 0.00083 24.8 3.0 36 32-68 1-40 (96)
98 PF01753 zf-MYND: MYND finger; 37.1 16 0.00034 22.1 0.7 18 143-162 11-28 (37)
99 PF08394 Arc_trans_TRASH: Arch 36.4 19 0.00041 22.7 0.9 33 117-151 1-33 (37)
100 PRK13604 luxD acyl transferase 36.1 63 0.0014 29.1 4.6 30 31-61 37-70 (307)
101 PTZ00393 protein tyrosine phos 35.8 46 0.00099 29.2 3.5 26 31-56 171-198 (241)
102 PRK10499 PTS system N,N'-diace 35.6 46 0.00099 25.1 3.1 21 31-51 4-24 (106)
103 PRK10310 PTS system galactitol 34.8 58 0.0013 23.8 3.5 26 31-56 3-33 (94)
104 PF03162 Y_phosphatase2: Tyros 33.5 30 0.00065 28.0 1.9 40 27-70 88-129 (164)
105 PF05706 CDKN3: Cyclin-depende 32.1 51 0.0011 27.4 3.1 24 31-54 134-159 (168)
106 COG0394 Wzb Protein-tyrosine-p 32.1 68 0.0015 25.3 3.7 37 31-67 3-40 (139)
107 cd02340 ZZ_NBR1_like Zinc fing 31.7 34 0.00074 21.8 1.6 31 116-150 2-32 (43)
108 PF00782 DSPc: Dual specificit 31.5 72 0.0016 23.6 3.7 25 31-55 74-101 (133)
109 cd00133 PTS_IIB PTS_IIB: subun 31.3 57 0.0012 21.5 2.8 21 32-52 1-22 (84)
110 PF13350 Y_phosphatase3: Tyros 30.2 56 0.0012 25.8 3.0 25 31-55 125-151 (164)
111 KOG0333 U5 snRNP-like RNA heli 29.9 62 0.0013 31.9 3.7 35 30-65 517-551 (673)
112 PF02302 PTS_IIB: PTS system, 29.9 68 0.0015 22.3 3.1 25 32-56 1-30 (90)
113 PRK04837 ATP-dependent RNA hel 29.2 80 0.0017 28.7 4.2 36 31-67 256-291 (423)
114 PF08274 PhnA_Zn_Ribbon: PhnA 29.1 23 0.00051 21.2 0.5 27 114-150 2-28 (30)
115 COG5211 SSU72 RNA polymerase I 28.6 50 0.0011 27.6 2.5 30 31-61 7-37 (197)
116 PRK04023 DNA polymerase II lar 27.9 48 0.001 34.8 2.7 44 114-162 626-672 (1121)
117 TIGR01587 cas3_core CRISPR-ass 27.2 80 0.0017 27.6 3.7 37 31-67 223-260 (358)
118 COG1440 CelA Phosphotransferas 26.7 76 0.0017 24.3 3.0 22 31-52 2-23 (102)
119 PRK07116 flavodoxin; Provision 26.4 39 0.00084 26.7 1.5 48 24-71 100-157 (160)
120 PRK12336 translation initiatio 26.3 36 0.00079 28.6 1.3 33 113-151 97-129 (201)
121 cd02336 ZZ_RSC8 Zinc finger, Z 26.3 48 0.001 21.5 1.6 32 116-151 2-33 (45)
122 cd05566 PTS_IIB_galactitol PTS 26.2 83 0.0018 22.0 3.0 25 31-55 1-30 (89)
123 PF00628 PHD: PHD-finger; Int 26.2 52 0.0011 20.7 1.8 17 139-155 12-28 (51)
124 PF03853 YjeF_N: YjeF-related 26.1 1.3E+02 0.0028 24.1 4.5 29 31-60 26-57 (169)
125 PRK11776 ATP-dependent RNA hel 25.9 87 0.0019 28.8 3.9 36 31-67 243-278 (460)
126 PRK14665 mnmA tRNA-specific 2- 25.8 1.2E+02 0.0025 27.8 4.6 29 27-56 3-31 (360)
127 PF03054 tRNA_Me_trans: tRNA m 25.7 92 0.002 28.6 3.9 28 31-59 1-28 (356)
128 TIGR00614 recQ_fam ATP-depende 24.6 97 0.0021 28.8 3.9 35 31-66 227-261 (470)
129 smart00653 eIF2B_5 domain pres 24.6 44 0.00096 25.6 1.4 30 114-149 80-109 (110)
130 PRK11192 ATP-dependent RNA hel 24.4 1.1E+02 0.0025 27.7 4.3 36 31-67 246-281 (434)
131 PF06689 zf-C4_ClpX: ClpX C4-t 24.3 49 0.0011 20.8 1.3 31 116-150 3-33 (41)
132 cd05567 PTS_IIB_mannitol PTS_I 24.2 1E+02 0.0022 21.9 3.1 24 32-55 2-30 (87)
133 COG0513 SrmB Superfamily II DN 24.0 93 0.002 29.6 3.7 35 32-67 275-309 (513)
134 TIGR00311 aIF-2beta translatio 23.9 44 0.00095 26.5 1.3 31 114-150 97-127 (133)
135 PHA02565 49 recombination endo 23.5 58 0.0013 26.8 2.0 35 114-149 20-63 (157)
136 PF09889 DUF2116: Uncharacteri 23.4 43 0.00094 23.1 1.0 13 114-126 3-15 (59)
137 PF03833 PolC_DP2: DNA polymer 23.4 27 0.00059 35.8 0.0 44 114-162 655-701 (900)
138 PRK09678 DNA-binding transcrip 23.2 72 0.0016 22.8 2.2 18 128-145 26-43 (72)
139 PF04122 CW_binding_2: Putativ 23.0 1.1E+02 0.0023 21.8 3.1 34 31-67 51-84 (92)
140 cd02249 ZZ Zinc finger, ZZ typ 22.9 54 0.0012 20.8 1.4 31 116-150 2-32 (46)
141 PRK11057 ATP-dependent DNA hel 22.8 1.1E+02 0.0023 29.7 3.9 35 31-66 237-271 (607)
142 PLN03050 pyridoxine (pyridoxam 22.7 1.3E+02 0.0028 26.0 4.1 26 31-56 61-89 (246)
143 PRK10590 ATP-dependent RNA hel 22.5 1.1E+02 0.0023 28.3 3.8 36 31-67 246-281 (456)
144 KOG0330 ATP-dependent RNA heli 21.9 1.3E+02 0.0028 28.8 4.0 39 31-70 301-339 (476)
145 TIGR02189 GlrX-like_plant Glut 21.8 3.2E+02 0.007 19.8 6.2 33 31-63 8-42 (99)
146 PLN02727 NAD kinase 21.5 80 0.0017 33.0 2.9 22 31-52 342-365 (986)
147 PF12146 Hydrolase_4: Putative 21.5 2.1E+02 0.0045 20.1 4.3 30 31-61 16-49 (79)
148 cd02066 GRX_family Glutaredoxi 21.3 1.6E+02 0.0034 18.5 3.4 31 32-62 1-33 (72)
149 PRK01297 ATP-dependent RNA hel 21.2 99 0.0022 28.6 3.3 39 31-70 336-374 (475)
150 PRK03988 translation initiatio 21.1 56 0.0012 26.1 1.4 31 114-150 102-132 (138)
151 PF14952 zf-tcix: Putative tre 20.6 61 0.0013 21.2 1.2 28 113-141 10-37 (44)
152 PRK04537 ATP-dependent RNA hel 20.3 1.3E+02 0.0027 29.1 3.9 35 31-66 258-292 (572)
153 COG5254 ARV1 Predicted membran 20.1 42 0.00091 29.0 0.5 33 116-151 2-34 (239)
154 KOG0353 ATP-dependent DNA heli 20.1 1.6E+02 0.0035 28.2 4.3 63 31-98 318-385 (695)
No 1
>PRK00142 putative rhodanese-related sulfurtransferase; Provisional
Probab=100.00 E-value=9.8e-38 Score=276.50 Aligned_cols=146 Identities=36% Similarity=0.776 Sum_probs=130.5
Q ss_pred ccChhhhhcCCCccccccCCCCCC-------------CCCCCeEEEEcCCChhHHHHHHHHHHcCCCcEEEcCcchHhhh
Q 029506 3 VMNSLLSQYNLFVQAFASDPLADL-------------DKEKTDILMYCTGGIRCDVYSTILRQRGFHNLYTLKGGVSHYL 69 (192)
Q Consensus 3 ~rn~~E~~~g~f~gai~~~pl~el-------------~k~~k~IvlyC~~G~Rs~~Aa~~L~~~Gf~~Vy~L~GGi~~w~ 69 (192)
|||++|+.+||||||+ ++|+.++ .++ ++|||||++|+||++|+.+|+++||++|++|.|||.+|.
T Consensus 133 VR~~~E~~~GhI~GAi-~ip~~~~~~~~~~l~~~~~~~kd-k~IvvyC~~G~Rs~~aa~~L~~~Gf~~V~~L~GGi~~w~ 210 (314)
T PRK00142 133 MRNDYEYEIGHFENAI-EPDIETFREFPPWVEENLDPLKD-KKVVMYCTGGIRCEKASAWMKHEGFKEVYQLEGGIITYG 210 (314)
T ss_pred CCCHHHHhcCcCCCCE-eCCHHHhhhhHHHHHHhcCCCCc-CeEEEECCCCcHHHHHHHHHHHcCCCcEEEecchHHHHH
Confidence 8999999999999999 7775333 245 799999999999999999999999999999999999999
Q ss_pred hhcCCc--eeeccceEEeeeccCCCCCCCCchhhhhhhcCCCCCCCccccccCCCccccccccccCCCCCCccEEeChhh
Q 029506 70 ENEGPV--EWVGNLFVFDSRLSLPPSAYKPDAVSEARMIGKVPENPFATCYICSSQVRELRHRNCANLDCNLLFLCCADC 147 (192)
Q Consensus 70 ~~~~p~--~~~g~~fVFD~R~~v~~~~~~~~~~~~~~~~~~~~~~~~~~C~~C~~~~~~~~~~nC~n~~C~~l~l~C~~C 147 (192)
+...+. .|+|+|||||.|++++++. ..++++|+.||+|++. |.||+|+.||.++++|+.|
T Consensus 211 ~~~~~~~~~w~G~~fVFD~R~~~~~~~----------------~~~~~~c~~cg~~~~~--~~~C~~~~C~~~~~~c~~c 272 (314)
T PRK00142 211 EDPETQGLLWDGKLYVFDERMAVPIND----------------EVPIGHCHQCGTPCDR--YVNCANPACNLLILQCEEC 272 (314)
T ss_pred HhhccccceeecCCccccCcccCCCCc----------------cccccccccCCCCcch--hhCCCCCCCCCeEeechhh
Confidence 876654 5999999999999998761 3468999999999984 7999999999999999999
Q ss_pred hhccCCCCChhhhcccCCCCC
Q 029506 148 VKNLRGCCCLNCTTAPQRRPV 168 (192)
Q Consensus 148 ~~~~~~~c~~~C~~~~~~r~~ 168 (192)
..++.++||..|..++++++.
T Consensus 273 ~~~~~~~~s~~~~~~~~~~~~ 293 (314)
T PRK00142 273 EEKYLGCCSEECCEHPRNRYV 293 (314)
T ss_pred hHHhcCccCchhcccccCHHH
Confidence 999999999999998887743
No 2
>COG1054 Predicted sulfurtransferase [General function prediction only]
Probab=100.00 E-value=4.3e-35 Score=256.78 Aligned_cols=139 Identities=36% Similarity=0.752 Sum_probs=119.3
Q ss_pred ccChhhhhcCCCccccccCC--CCCCC----------CCCCeEEEEcCCChhHHHHHHHHHHcCCCcEEEcCcchHhhhh
Q 029506 3 VMNSLLSQYNLFVQAFASDP--LADLD----------KEKTDILMYCTGGIRCDVYSTILRQRGFHNLYTLKGGVSHYLE 70 (192)
Q Consensus 3 ~rn~~E~~~g~f~gai~~~p--l~el~----------k~~k~IvlyC~~G~Rs~~Aa~~L~~~Gf~~Vy~L~GGi~~w~~ 70 (192)
.||.+|+++|||.||+.+.. ..++| ++ |+|+||||||+||++|+.+|++.||++||+|+|||..|.+
T Consensus 134 tRN~YE~~iG~F~gAv~p~~~tFrefP~~v~~~~~~~~~-KkVvmyCTGGIRCEKas~~m~~~GF~eVyhL~GGIl~Y~e 212 (308)
T COG1054 134 TRNDYEVAIGHFEGAVEPDIETFREFPAWVEENLDLLKD-KKVVMYCTGGIRCEKASAWMKENGFKEVYHLEGGILKYLE 212 (308)
T ss_pred cCcceeEeeeeecCccCCChhhhhhhHHHHHHHHHhccC-CcEEEEcCCceeehhhHHHHHHhcchhhhcccchHHHHhh
Confidence 69999999999999995542 12222 35 7999999999999999999999999999999999999998
Q ss_pred hcCC--ceeeccceEEeeeccCCCCCCCCchhhhhhhcCCCCCCCccccccCCCccccccccccCCCCCCccEEeChhhh
Q 029506 71 NEGP--VEWVGNLFVFDSRLSLPPSAYKPDAVSEARMIGKVPENPFATCYICSSQVRELRHRNCANLDCNLLFLCCADCV 148 (192)
Q Consensus 71 ~~~p--~~~~g~~fVFD~R~~v~~~~~~~~~~~~~~~~~~~~~~~~~~C~~C~~~~~~~~~~nC~n~~C~~l~l~C~~C~ 148 (192)
+..+ ..|.|+|||||+|++|+++..+++ + .|+ .||+|+.|+.++++|+.|.
T Consensus 213 ~~~~~g~lw~G~cFVFDeRvav~~~l~~~~---------------~-------~~C-----~~C~~p~~~~~~~~~~~~~ 265 (308)
T COG1054 213 DVGTEGSLWDGKCFVFDERVAVPIGLVEGD---------------H-------TPC-----DNCRNPLCNLLFISCEYCE 265 (308)
T ss_pred hcCccCceeccceeEecceecccCcccCCC---------------c-------chh-----hhcCCCCCHHHhhcchhhh
Confidence 7655 359999999999999998864321 2 233 2899999999999999999
Q ss_pred hccCCCCChhhhcccCCCCCC
Q 029506 149 KNLRGCCCLNCTTAPQRRPVL 169 (192)
Q Consensus 149 ~~~~~~c~~~C~~~~~~r~~~ 169 (192)
.++.++|+++|.+++++|+..
T Consensus 266 ~~~~~~C~~ec~~~~~~r~~e 286 (308)
T COG1054 266 GKYCGCCSDECSEEPRLRYEE 286 (308)
T ss_pred cccCCCccHHHhhhhhhHHHH
Confidence 999999999999999999766
No 3
>PRK05320 rhodanese superfamily protein; Provisional
Probab=99.95 E-value=2.8e-28 Score=210.89 Aligned_cols=107 Identities=29% Similarity=0.593 Sum_probs=94.3
Q ss_pred ccChhhhhcCCCccccccCCCCCC-------C------CCCCeEEEEcCCChhHHHHHHHHHHcCCCcEEEcCcchHhhh
Q 029506 3 VMNSLLSQYNLFVQAFASDPLADL-------D------KEKTDILMYCTGGIRCDVYSTILRQRGFHNLYTLKGGVSHYL 69 (192)
Q Consensus 3 ~rn~~E~~~g~f~gai~~~pl~el-------~------k~~k~IvlyC~~G~Rs~~Aa~~L~~~Gf~~Vy~L~GGi~~w~ 69 (192)
|||++|+++|||+||+ ++|+.++ . ++ ++|+|||++|+||++|+++|++.||++||+|+|||.+|.
T Consensus 137 VR~~~E~~~Ghi~GAi-niPl~~f~~~~~~l~~~~~~~kd-k~IvvyC~~G~Rs~~Aa~~L~~~Gf~~V~~L~GGi~~w~ 214 (257)
T PRK05320 137 TRNAFEVDVGTFDGAL-DYRIDKFTEFPEALAAHRADLAG-KTVVSFCTGGIRCEKAAIHMQEVGIDNVYQLEGGILKYF 214 (257)
T ss_pred CCCHHHHccCccCCCE-eCChhHhhhhHHHHHhhhhhcCC-CeEEEECCCCHHHHHHHHHHHHcCCcceEEeccCHHHHH
Confidence 8999999999999999 8886441 1 45 799999999999999999999999999999999999999
Q ss_pred hhcCCceeeccceEEeeeccCCCCCCCCchhhhhhhcCCCCCCCccccccCCCcccc
Q 029506 70 ENEGPVEWVGNLFVFDSRLSLPPSAYKPDAVSEARMIGKVPENPFATCYICSSQVRE 126 (192)
Q Consensus 70 ~~~~p~~~~g~~fVFD~R~~v~~~~~~~~~~~~~~~~~~~~~~~~~~C~~C~~~~~~ 126 (192)
+...+..|+|+|||||.|++|+++. .+..++.|+.|+.|.+.
T Consensus 215 ~~~~~~~~~G~~fVFD~R~~~~~~~---------------~~~~~~~c~~c~~~~~~ 256 (257)
T PRK05320 215 EEVGGAHYDGDCFVFDYRTALDPQL---------------APLVDVTCFACRAVVTP 256 (257)
T ss_pred HhCCCCeeeeeeeeecCeeecCCCC---------------ccCccceecCCCCcCCC
Confidence 9877767999999999999998643 24457899999999863
No 4
>PRK01415 hypothetical protein; Validated
Probab=99.92 E-value=3.7e-25 Score=190.92 Aligned_cols=90 Identities=34% Similarity=0.646 Sum_probs=80.4
Q ss_pred ccChhhhhcCCCccccccCCCC-------------CCCCCCCeEEEEcCCChhHHHHHHHHHHcCCCcEEEcCcchHhhh
Q 029506 3 VMNSLLSQYNLFVQAFASDPLA-------------DLDKEKTDILMYCTGGIRCDVYSTILRQRGFHNLYTLKGGVSHYL 69 (192)
Q Consensus 3 ~rn~~E~~~g~f~gai~~~pl~-------------el~k~~k~IvlyC~~G~Rs~~Aa~~L~~~Gf~~Vy~L~GGi~~w~ 69 (192)
|||++|+++|||++|+ ++|+. +++++ ++|+|||++|+||++|+++|+++||++||+|+|||.+|.
T Consensus 133 VRn~~E~~~Ghi~gAi-nip~~~f~e~~~~~~~~~~~~k~-k~Iv~yCtgGiRs~kAa~~L~~~Gf~~Vy~L~GGi~~w~ 210 (247)
T PRK01415 133 TRNDYEVEVGTFKSAI-NPNTKTFKQFPAWVQQNQELLKG-KKIAMVCTGGIRCEKSTSLLKSIGYDEVYHLKGGILQYL 210 (247)
T ss_pred CCCHHHHhcCCcCCCC-CCChHHHhhhHHHHhhhhhhcCC-CeEEEECCCChHHHHHHHHHHHcCCCcEEEechHHHHHH
Confidence 8999999999999999 77732 34566 799999999999999999999999999999999999999
Q ss_pred hhcCC--ceeeccceEEeeeccCCCCC
Q 029506 70 ENEGP--VEWVGNLFVFDSRLSLPPSA 94 (192)
Q Consensus 70 ~~~~p--~~~~g~~fVFD~R~~v~~~~ 94 (192)
+...+ ..|+|+|||||+|++|+.+.
T Consensus 211 ~~~~~~~~~w~G~~fVFD~R~av~~~l 237 (247)
T PRK01415 211 EDTQNKNNLWQGECFVFDDRRAVTDDL 237 (247)
T ss_pred HhcccCCCeeeeeeeeeCceeecCCCC
Confidence 87654 46999999999999998654
No 5
>cd01518 RHOD_YceA Member of the Rhodanese Homology Domain superfamily. This CD includes Escherichia coli YceA, Bacillus subtilis YbfQ, and similar uncharacterized proteins.
Probab=99.68 E-value=4.4e-17 Score=120.26 Aligned_cols=66 Identities=44% Similarity=0.780 Sum_probs=60.1
Q ss_pred ccChhhhhcCCCccccccCCCCCC-------------CCCCCeEEEEcCCChhHHHHHHHHHHcCCCcEEEcCcchHhhh
Q 029506 3 VMNSLLSQYNLFVQAFASDPLADL-------------DKEKTDILMYCTGGIRCDVYSTILRQRGFHNLYTLKGGVSHYL 69 (192)
Q Consensus 3 ~rn~~E~~~g~f~gai~~~pl~el-------------~k~~k~IvlyC~~G~Rs~~Aa~~L~~~Gf~~Vy~L~GGi~~w~ 69 (192)
||++.|++.||||||+ ++|+.++ +++ ++||+||++|.||..|+.+|+++||++||+|.||+.+|.
T Consensus 23 vR~~~e~~~ghi~gA~-~ip~~~~~~~~~~~~~~~~~~~~-~~ivvyC~~G~rs~~a~~~L~~~G~~~v~~l~GG~~~W~ 100 (101)
T cd01518 23 VRNDYEYDIGHFKGAV-NPDVDTFREFPFWLDENLDLLKG-KKVLMYCTGGIRCEKASAYLKERGFKNVYQLKGGILKYL 100 (101)
T ss_pred cCChhhhhcCEecccc-CCCcccHhHhHHHHHhhhhhcCC-CEEEEECCCchhHHHHHHHHHHhCCcceeeechhHHHHh
Confidence 8999999999999999 8886543 456 799999999999999999999999999999999999996
Q ss_pred h
Q 029506 70 E 70 (192)
Q Consensus 70 ~ 70 (192)
+
T Consensus 101 ~ 101 (101)
T cd01518 101 E 101 (101)
T ss_pred C
Confidence 4
No 6
>PLN02160 thiosulfate sulfurtransferase
Probab=99.61 E-value=1.7e-15 Score=119.33 Aligned_cols=72 Identities=22% Similarity=0.298 Sum_probs=64.5
Q ss_pred ccChhhhhcCCCccc--cccCCCC------------------C-CCCCCCeEEEEcCCChhHHHHHHHHHHcCCCcEEEc
Q 029506 3 VMNSLLSQYNLFVQA--FASDPLA------------------D-LDKEKTDILMYCTGGIRCDVYSTILRQRGFHNLYTL 61 (192)
Q Consensus 3 ~rn~~E~~~g~f~ga--i~~~pl~------------------e-l~k~~k~IvlyC~~G~Rs~~Aa~~L~~~Gf~~Vy~L 61 (192)
||++.|+..||||+| + ++|+. + ++++ ++||+||.+|.||..|+..|++.||++|++|
T Consensus 35 VR~~~E~~~ghIpgA~~i-niP~~~~~~~~~l~~~~~~~~~~~~~~~~-~~IivyC~sG~RS~~Aa~~L~~~G~~~v~~l 112 (136)
T PLN02160 35 VRTQDEFRRGHCEAAKIV-NIPYMLNTPQGRVKNQEFLEQVSSLLNPA-DDILVGCQSGARSLKATTELVAAGYKKVRNK 112 (136)
T ss_pred CCCHHHHhcCCCCCccee-cccchhcCcccccCCHHHHHHHHhccCCC-CcEEEECCCcHHHHHHHHHHHHcCCCCeeec
Confidence 899999999999999 6 66641 1 3556 7999999999999999999999999999999
Q ss_pred CcchHhhhhhcCCce
Q 029506 62 KGGVSHYLENEGPVE 76 (192)
Q Consensus 62 ~GGi~~w~~~~~p~~ 76 (192)
.||+.+|.+.++|+.
T Consensus 113 ~GG~~~W~~~g~p~~ 127 (136)
T PLN02160 113 GGGYLAWVDHSFPIN 127 (136)
T ss_pred CCcHHHHhhCCCCcc
Confidence 999999999999974
No 7
>cd01523 RHOD_Lact_B Member of the Rhodanese Homology Domain superfamily. This CD includes predicted proteins with rhodanese-like domains found N-terminal of the metallo-beta-lactamase domain.
Probab=99.59 E-value=2e-15 Score=110.98 Aligned_cols=64 Identities=19% Similarity=0.297 Sum_probs=58.2
Q ss_pred ccChhhhhcCCCccccccCCCCC---------------CCCCCCeEEEEcCCChhHHHHHHHHHHcCCCcEEEcCcchHh
Q 029506 3 VMNSLLSQYNLFVQAFASDPLAD---------------LDKEKTDILMYCTGGIRCDVYSTILRQRGFHNLYTLKGGVSH 67 (192)
Q Consensus 3 ~rn~~E~~~g~f~gai~~~pl~e---------------l~k~~k~IvlyC~~G~Rs~~Aa~~L~~~Gf~~Vy~L~GGi~~ 67 (192)
||++.|++.|||||++ ++|+.+ ++++ ++||+||.+|.||..|+..|++.||+ +++|+||+.+
T Consensus 21 vR~~~e~~~ghi~ga~-~ip~~~~~~~~~~~~~~~~~~~~~~-~~ivv~C~~G~rs~~aa~~L~~~G~~-~~~l~GG~~~ 97 (100)
T cd01523 21 VRNESDYERWKIDGEN-NTPYFDPYFDFLEIEEDILDQLPDD-QEVTVICAKEGSSQFVAELLAERGYD-VDYLAGGMKA 97 (100)
T ss_pred eCCHHHHhhcccCCCc-ccccccchHHHHHhhHHHHhhCCCC-CeEEEEcCCCCcHHHHHHHHHHcCce-eEEeCCcHHh
Confidence 8999999999999999 777533 4566 79999999999999999999999998 9999999999
Q ss_pred hh
Q 029506 68 YL 69 (192)
Q Consensus 68 w~ 69 (192)
|.
T Consensus 98 W~ 99 (100)
T cd01523 98 WS 99 (100)
T ss_pred hc
Confidence 96
No 8
>cd01533 4RHOD_Repeat_2 Member of the Rhodanese Homology Domain superfamily, repeat 2. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 2nd repeat which does contain the putative catalytic Cys residue.
Probab=99.59 E-value=1.8e-15 Score=113.20 Aligned_cols=68 Identities=22% Similarity=0.217 Sum_probs=60.4
Q ss_pred ccChhhhhcCCCccccccCCCCC-------C--CCCCCeEEEEcCCChhHHHHHHHHHHcCCCc-EEEcCcchHhhhhhc
Q 029506 3 VMNSLLSQYNLFVQAFASDPLAD-------L--DKEKTDILMYCTGGIRCDVYSTILRQRGFHN-LYTLKGGVSHYLENE 72 (192)
Q Consensus 3 ~rn~~E~~~g~f~gai~~~pl~e-------l--~k~~k~IvlyC~~G~Rs~~Aa~~L~~~Gf~~-Vy~L~GGi~~w~~~~ 72 (192)
||++.||..||||||+ ++|+.+ + +++ ++||+||.+|.||..++..|++.||++ |++|.||+.+|...+
T Consensus 32 vR~~~e~~~ghIpgai-nip~~~l~~~~~~l~~~~~-~~ivv~C~~G~rs~~a~~~L~~~G~~~~v~~l~gG~~~W~~~g 109 (109)
T cd01533 32 GRRFDEYRKMTIPGSV-SCPGAELVLRVGELAPDPR-TPIVVNCAGRTRSIIGAQSLINAGLPNPVAALRNGTQGWTLAG 109 (109)
T ss_pred CCCHHHHhcCcCCCce-eCCHHHHHHHHHhcCCCCC-CeEEEECCCCchHHHHHHHHHHCCCCcceeEecCCHHHHHhcC
Confidence 8999999999999999 888533 3 234 799999999999999999999999987 999999999998753
No 9
>COG0607 PspE Rhodanese-related sulfurtransferase [Inorganic ion transport and metabolism]
Probab=99.55 E-value=6.8e-15 Score=108.31 Aligned_cols=72 Identities=26% Similarity=0.510 Sum_probs=64.7
Q ss_pred ccChhhhhcCCCcc-ccccCCCCCC---------CCCCCeEEEEcCCChhHHHHHHHHHHcCCCcEEEcCcchHhhhhhc
Q 029506 3 VMNSLLSQYNLFVQ-AFASDPLADL---------DKEKTDILMYCTGGIRCDVYSTILRQRGFHNLYTLKGGVSHYLENE 72 (192)
Q Consensus 3 ~rn~~E~~~g~f~g-ai~~~pl~el---------~k~~k~IvlyC~~G~Rs~~Aa~~L~~~Gf~~Vy~L~GGi~~w~~~~ 72 (192)
||++.|++.+|+|+ ++ ++|++++ +++ ++|++||.+|.||..|++.|+++||+++++|.||+.+|...+
T Consensus 26 vR~~~e~~~~~i~~~~~-~ip~~~~~~~~~~~~~~~~-~~ivv~C~~G~rS~~aa~~L~~~G~~~~~~l~gG~~~w~~~~ 103 (110)
T COG0607 26 VREPEEYERGHIPGAAI-NIPLSELKAAENLLELPDD-DPIVVYCASGVRSAAAAAALKLAGFTNVYNLDGGIDAWKGAG 103 (110)
T ss_pred ccChhHhhhcCCCccee-eeecccchhhhcccccCCC-CeEEEEeCCCCChHHHHHHHHHcCCccccccCCcHHHHHhcC
Confidence 89999999999999 77 8886554 235 799999999999999999999999999999999999999998
Q ss_pred CCce
Q 029506 73 GPVE 76 (192)
Q Consensus 73 ~p~~ 76 (192)
.|..
T Consensus 104 ~~~~ 107 (110)
T COG0607 104 LPLV 107 (110)
T ss_pred CCcc
Confidence 8853
No 10
>PRK00162 glpE thiosulfate sulfurtransferase; Validated
Probab=99.54 E-value=1e-14 Score=108.90 Aligned_cols=75 Identities=19% Similarity=0.239 Sum_probs=66.8
Q ss_pred ccChhhhhcCCCccccccCCC-------CCCCCCCCeEEEEcCCChhHHHHHHHHHHcCCCcEEEcCcchHhhhhhcCCc
Q 029506 3 VMNSLLSQYNLFVQAFASDPL-------ADLDKEKTDILMYCTGGIRCDVYSTILRQRGFHNLYTLKGGVSHYLENEGPV 75 (192)
Q Consensus 3 ~rn~~E~~~g~f~gai~~~pl-------~el~k~~k~IvlyC~~G~Rs~~Aa~~L~~~Gf~~Vy~L~GGi~~w~~~~~p~ 75 (192)
||++.|+..||||+|+ ++|+ ..++++ ++|++||.+|.||..++..|++.||++|+.|.||+.+|...+.|+
T Consensus 26 vR~~~e~~~ghi~gA~-~ip~~~l~~~~~~~~~~-~~ivv~c~~g~~s~~a~~~L~~~G~~~v~~l~GG~~~w~~~~~~~ 103 (108)
T PRK00162 26 IRDPQSFAMGHAPGAF-HLTNDSLGAFMRQADFD-TPVMVMCYHGNSSQGAAQYLLQQGFDVVYSIDGGFEAWRRTFPAE 103 (108)
T ss_pred cCCHHHHhcCCCCCCe-ECCHHHHHHHHHhcCCC-CCEEEEeCCCCCHHHHHHHHHHCCchheEEecCCHHHHHhcCCCc
Confidence 7999999999999999 7764 345667 799999999999999999999999999999999999999999886
Q ss_pred eeec
Q 029506 76 EWVG 79 (192)
Q Consensus 76 ~~~g 79 (192)
.-.|
T Consensus 104 ~~~~ 107 (108)
T PRK00162 104 VASG 107 (108)
T ss_pred cCCC
Confidence 5433
No 11
>cd01527 RHOD_YgaP Member of the Rhodanese Homology Domain superfamily. This CD includes Escherichia coli YgaP, and similar uncharacterized putative rhodanese-related sulfurtransferases.
Probab=99.53 E-value=2.1e-14 Score=105.21 Aligned_cols=70 Identities=20% Similarity=0.251 Sum_probs=63.0
Q ss_pred ccChhhhhcCCCccccccCCCCC-------CCCCCCeEEEEcCCChhHHHHHHHHHHcCCCcEEEcCcchHhhhhhcCC
Q 029506 3 VMNSLLSQYNLFVQAFASDPLAD-------LDKEKTDILMYCTGGIRCDVYSTILRQRGFHNLYTLKGGVSHYLENEGP 74 (192)
Q Consensus 3 ~rn~~E~~~g~f~gai~~~pl~e-------l~k~~k~IvlyC~~G~Rs~~Aa~~L~~~Gf~~Vy~L~GGi~~w~~~~~p 74 (192)
||++.|+..||||||+ ++|+.+ ++++ ++||+||.+|.|+..++..|++.||.+|+.|.||+.+|...+.|
T Consensus 22 vR~~~e~~~~hi~ga~-~ip~~~~~~~~~~~~~~-~~iv~~c~~g~~s~~~~~~L~~~g~~~v~~l~gG~~~W~~~~~~ 98 (99)
T cd01527 22 IREPDEYLRERIPGAR-LVPLSQLESEGLPLVGA-NAIIFHCRSGMRTQQNAERLAAISAGEAYVLEGGLDAWKAAGLP 98 (99)
T ss_pred CCCHHHHHhCcCCCCE-ECChhHhcccccCCCCC-CcEEEEeCCCchHHHHHHHHHHcCCccEEEeeCCHHHHHHCcCC
Confidence 7999999999999999 777533 3455 79999999999999999999999999999999999999988776
No 12
>cd01526 RHOD_ThiF Member of the Rhodanese Homology Domain superfamily. This CD includes several putative molybdopterin synthase sulfurylases including the molybdenum cofactor biosynthetic protein (CnxF) of Aspergillus nidulans and the molybdenum cofactor synthesis protein 3 (MOCS3) of Homo sapiens. These rhodanese-like domains are found C-terminal of the ThiF and MoeZ_MoeB domains.
Probab=99.51 E-value=2e-14 Score=110.05 Aligned_cols=71 Identities=21% Similarity=0.384 Sum_probs=63.1
Q ss_pred ccChhhhhcCCCccccccCCCCCC-----------------CCCCCeEEEEcCCChhHHHHHHHHHHcCC-CcEEEcCcc
Q 029506 3 VMNSLLSQYNLFVQAFASDPLADL-----------------DKEKTDILMYCTGGIRCDVYSTILRQRGF-HNLYTLKGG 64 (192)
Q Consensus 3 ~rn~~E~~~g~f~gai~~~pl~el-----------------~k~~k~IvlyC~~G~Rs~~Aa~~L~~~Gf-~~Vy~L~GG 64 (192)
||++.|+..||||||+ ++|+.++ +++ ++||+||.+|.||..++..|++.|| ++|+.|+||
T Consensus 30 vR~~~e~~~~hIpgai-~ip~~~~~~~~~~~~~~~~~~~~~~~~-~~ivv~C~~G~rs~~aa~~L~~~G~~~~v~~l~GG 107 (122)
T cd01526 30 VRPKVHFEICRLPEAI-NIPLSELLSKAAELKSLQELPLDNDKD-SPIYVVCRRGNDSQTAVRKLKELGLERFVRDIIGG 107 (122)
T ss_pred cCCHHHhhcccCCCCe-EccHHHHhhhhhhhhhhhhcccccCCC-CcEEEECCCCCcHHHHHHHHHHcCCccceeeecch
Confidence 7999999999999999 8874322 345 7999999999999999999999999 799999999
Q ss_pred hHhhhhhcCCc
Q 029506 65 VSHYLENEGPV 75 (192)
Q Consensus 65 i~~w~~~~~p~ 75 (192)
+.+|..+..+.
T Consensus 108 ~~~W~~~~~~~ 118 (122)
T cd01526 108 LKAWADKVDPT 118 (122)
T ss_pred HHHHHHHhCcc
Confidence 99999887764
No 13
>cd01519 RHOD_HSP67B2 Member of the Rhodanese Homology Domain superfamily. This CD includes the heat shock protein 67B2 of Drosophila melanogaster and other similar proteins, many of which are uncharacterized.
Probab=99.51 E-value=2.4e-14 Score=105.56 Aligned_cols=65 Identities=22% Similarity=0.426 Sum_probs=58.8
Q ss_pred ccChhhhhcCCCccccccCCCCCC--------------------CCCCCeEEEEcCCChhHHHHHHHHHHcCCCcEEEcC
Q 029506 3 VMNSLLSQYNLFVQAFASDPLADL--------------------DKEKTDILMYCTGGIRCDVYSTILRQRGFHNLYTLK 62 (192)
Q Consensus 3 ~rn~~E~~~g~f~gai~~~pl~el--------------------~k~~k~IvlyC~~G~Rs~~Aa~~L~~~Gf~~Vy~L~ 62 (192)
||++.|+..||||+|+ ++|+.++ +++ ++||+||.+|.|+..++..|+..||++|+.+.
T Consensus 21 vR~~~e~~~ghIpgA~-~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ivv~c~~g~~s~~~~~~l~~~G~~~v~~~~ 98 (106)
T cd01519 21 VREPEELKTGKIPGAI-NIPLSSLPDALALSEEEFEKKYGFPKPSKD-KELIFYCKAGVRSKAAAELARSLGYENVGNYP 98 (106)
T ss_pred CCCHHHHhcCcCCCcE-EechHHhhhhhCCCHHHHHHHhcccCCCCC-CeEEEECCCcHHHHHHHHHHHHcCCccceecC
Confidence 7999999999999999 8876442 345 79999999999999999999999999999999
Q ss_pred cchHhhh
Q 029506 63 GGVSHYL 69 (192)
Q Consensus 63 GGi~~w~ 69 (192)
||+.+|.
T Consensus 99 Gg~~~W~ 105 (106)
T cd01519 99 GSWLDWA 105 (106)
T ss_pred CcHHHHc
Confidence 9999996
No 14
>cd01534 4RHOD_Repeat_3 Member of the Rhodanese Homology Domain superfamily, repeat 3. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 3rd repeat which does not contain the putative catalytic Cys residue.
Probab=99.50 E-value=2.4e-14 Score=104.63 Aligned_cols=64 Identities=22% Similarity=0.342 Sum_probs=57.0
Q ss_pred ccChhhhhcCCCccccccCCCCC-------CC--CCCCeEEEEcCCChhHHHHHHHHHHcCCCcEEEcCcchHhhh
Q 029506 3 VMNSLLSQYNLFVQAFASDPLAD-------LD--KEKTDILMYCTGGIRCDVYSTILRQRGFHNLYTLKGGVSHYL 69 (192)
Q Consensus 3 ~rn~~E~~~g~f~gai~~~pl~e-------l~--k~~k~IvlyC~~G~Rs~~Aa~~L~~~Gf~~Vy~L~GGi~~w~ 69 (192)
||++.|+..|||||++ ++|+.+ +. ++ ++||+||.+|.||..++.+|+..||+ |+.|.||+.+|.
T Consensus 22 vR~~~e~~~ghipga~-~ip~~~l~~~~~~~~~~~~-~~iv~~c~~G~rs~~aa~~L~~~G~~-v~~l~GG~~~W~ 94 (95)
T cd01534 22 VRTPEEYEAGHLPGFR-HTPGGQLVQETDHFAPVRG-ARIVLADDDGVRADMTASWLAQMGWE-VYVLEGGLAAAL 94 (95)
T ss_pred CCCHHHHHhCCCCCcE-eCCHHHHHHHHHHhcccCC-CeEEEECCCCChHHHHHHHHHHcCCE-EEEecCcHHHhc
Confidence 8999999999999999 887532 21 24 69999999999999999999999998 999999999996
No 15
>cd01520 RHOD_YbbB Member of the Rhodanese Homology Domain superfamily. This CD includes several putative ATP /GTP binding proteins including E. coli YbbB.
Probab=99.48 E-value=7.3e-14 Score=108.00 Aligned_cols=65 Identities=26% Similarity=0.482 Sum_probs=58.0
Q ss_pred ccChhhhhcCCCccccccCCCC------------------------------------------CCCCCCCeEEEEcC-C
Q 029506 3 VMNSLLSQYNLFVQAFASDPLA------------------------------------------DLDKEKTDILMYCT-G 39 (192)
Q Consensus 3 ~rn~~E~~~g~f~gai~~~pl~------------------------------------------el~k~~k~IvlyC~-~ 39 (192)
||++.|++.||||+|+ ++|+. .++++ ++||+||. +
T Consensus 19 vR~~~e~~~ghIpgAi-nip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~-~~vvvyC~~~ 96 (128)
T cd01520 19 VRSPKEFFEGHLPGAI-NLPLLDDEERALVGTLYKQQGREAAIELGLELVSGKLKRILNEAWEARLERD-PKLLIYCARG 96 (128)
T ss_pred CCCHHHhccCcCCCcE-EccCCChhHHHHhhhheeccCHHHHHHHHHHHHhhhHHHHHHHHHHhccCCC-CeEEEEeCCC
Confidence 8999999999999999 88763 35566 79999996 7
Q ss_pred ChhHHHHHHHHHHcCCCcEEEcCcchHhhhh
Q 029506 40 GIRCDVYSTILRQRGFHNLYTLKGGVSHYLE 70 (192)
Q Consensus 40 G~Rs~~Aa~~L~~~Gf~~Vy~L~GGi~~w~~ 70 (192)
|.||..++..|+.+|| +|++|.||+.+|..
T Consensus 97 G~rs~~a~~~L~~~G~-~v~~L~GG~~aw~~ 126 (128)
T cd01520 97 GMRSQSLAWLLESLGI-DVPLLEGGYKAYRK 126 (128)
T ss_pred CccHHHHHHHHHHcCC-ceeEeCCcHHHHHh
Confidence 9999999999999999 69999999999964
No 16
>KOG1530 consensus Rhodanese-related sulfurtransferase [Inorganic ion transport and metabolism]
Probab=99.48 E-value=6e-14 Score=110.87 Aligned_cols=73 Identities=18% Similarity=0.296 Sum_probs=64.0
Q ss_pred cccChhhhhcCCCccccccCCCCC-------------------CCCCCCeEEEEcCCChhHHHHHHHHHHcCCCcEEEcC
Q 029506 2 MVMNSLLSQYNLFVQAFASDPLAD-------------------LDKEKTDILMYCTGGIRCDVYSTILRQRGFHNLYTLK 62 (192)
Q Consensus 2 ~~rn~~E~~~g~f~gai~~~pl~e-------------------l~k~~k~IvlyC~~G~Rs~~Aa~~L~~~Gf~~Vy~L~ 62 (192)
-||+++|++.||+|.+| ++|+.. .++.+++||++|++|.||.+|+..|...||++|.++.
T Consensus 43 DVRepeEfk~gh~~~si-NiPy~~~~~~~~l~~~eF~kqvg~~kp~~d~eiIf~C~SG~Rs~~A~~~l~s~Gyknv~ny~ 121 (136)
T KOG1530|consen 43 DVREPEEFKQGHIPASI-NIPYMSRPGAGALKNPEFLKQVGSSKPPHDKEIIFGCASGVRSLKATKILVSAGYKNVGNYP 121 (136)
T ss_pred eecCHHHhhccCCcceE-eccccccccccccCCHHHHHHhcccCCCCCCcEEEEeccCcchhHHHHHHHHcCcccccccC
Confidence 38999999999999999 988511 1222368999999999999999999999999999999
Q ss_pred cchHhhhhhcCCc
Q 029506 63 GGVSHYLENEGPV 75 (192)
Q Consensus 63 GGi~~w~~~~~p~ 75 (192)
||+.+|.+.++|.
T Consensus 122 Gs~~~W~~k~~~~ 134 (136)
T KOG1530|consen 122 GSYLAWVDKGGPK 134 (136)
T ss_pred ccHHHHHHccCCC
Confidence 9999999988874
No 17
>cd01529 4RHOD_Repeats Member of the Rhodanese Homology Domain superfamily. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. Only the second and most of the fourth repeats contain the putative catalytic Cys residue. This CD aligns the 1st , 2nd, 3rd, and 4th repeats.
Probab=99.47 E-value=6.6e-14 Score=102.33 Aligned_cols=65 Identities=20% Similarity=0.168 Sum_probs=58.0
Q ss_pred ccChhhhhcCCCccccccCCCCC-------------CCCCCCeEEEEcCCChhHHHHHHHHHHcCCCcEEEcCcchHhhh
Q 029506 3 VMNSLLSQYNLFVQAFASDPLAD-------------LDKEKTDILMYCTGGIRCDVYSTILRQRGFHNLYTLKGGVSHYL 69 (192)
Q Consensus 3 ~rn~~E~~~g~f~gai~~~pl~e-------------l~k~~k~IvlyC~~G~Rs~~Aa~~L~~~Gf~~Vy~L~GGi~~w~ 69 (192)
||++.|+..||||||+ ++|..+ ++++ ++||+||.+|.|+..++..|+..||++|+.|.||+.+|.
T Consensus 18 vR~~~~~~~~hIpgA~-~ip~~~~~~~~~~~~~~~~~~~~-~~ivv~c~~g~~s~~~~~~l~~~G~~~v~~l~GG~~~W~ 95 (96)
T cd01529 18 VRAEDEYAAGHLPGKR-SIPGAALVLRSQELQALEAPGRA-TRYVLTCDGSLLARFAAQELLALGGKPVALLDGGTSAWV 95 (96)
T ss_pred CCCHHHHcCCCCCCcE-eCCHHHhcCCHHHHHHhhcCCCC-CCEEEEeCChHHHHHHHHHHHHcCCCCEEEeCCCHHHhc
Confidence 8999999999999999 776321 2455 799999999999999999999999999999999999995
No 18
>cd01525 RHOD_Kc Member of the Rhodanese Homology Domain superfamily. Included in this CD are the rhodanese-like domains found C-terminal of the serine/threonine protein kinases catalytic (S_TKc) domain and the Tre-2, BUB2p, Cdc16p (TBC) domain. The putative active site Cys residue is not present in this CD.
Probab=99.47 E-value=6.8e-14 Score=103.14 Aligned_cols=65 Identities=15% Similarity=0.233 Sum_probs=57.9
Q ss_pred ccChhhhhcCCCccccccCCCCC----------CC--------CCCCeEEEEcCCChhHHHHHHHHHHcCCCcEEEcCcc
Q 029506 3 VMNSLLSQYNLFVQAFASDPLAD----------LD--------KEKTDILMYCTGGIRCDVYSTILRQRGFHNLYTLKGG 64 (192)
Q Consensus 3 ~rn~~E~~~g~f~gai~~~pl~e----------l~--------k~~k~IvlyC~~G~Rs~~Aa~~L~~~Gf~~Vy~L~GG 64 (192)
||++.||..||||||+ ++|+.+ ++ ++ ++||+||.+|.||..++..|+..||++|+.|.||
T Consensus 22 vR~~~e~~~ghIpgA~-~ip~~~~~~~~~~~~~~~~~~~~~~~~~-~~vv~~c~~g~~s~~~a~~L~~~G~~~v~~l~GG 99 (105)
T cd01525 22 IRSSPDFRRGHIEGSI-NIPFSSVFLKEGELEQLPTVPRLENYKG-KIIVIVSHSHKHAALFAAFLVKCGVPRVCILDGG 99 (105)
T ss_pred CCCHHHHhCCccCCCE-eCCHHHhcccccccccccchHHHHhhcC-CeEEEEeCCCccHHHHHHHHHHcCCCCEEEEeCc
Confidence 7999999999999999 777532 22 34 7999999999999999999999999999999999
Q ss_pred hHhhh
Q 029506 65 VSHYL 69 (192)
Q Consensus 65 i~~w~ 69 (192)
+.+|+
T Consensus 100 ~~a~~ 104 (105)
T cd01525 100 INALK 104 (105)
T ss_pred HHHhc
Confidence 99995
No 19
>cd01444 GlpE_ST GlpE sulfurtransferase (ST) and homologs are members of the Rhodanese Homology Domain superfamily. Unlike other rhodanese sulfurtransferases, GlpE is a single domain protein but indications are that it functions as a dimer. The active site contains a catalytically active cysteine.
Probab=99.47 E-value=9.3e-14 Score=100.48 Aligned_cols=65 Identities=23% Similarity=0.406 Sum_probs=59.5
Q ss_pred ccChhhhhc--CCCccccccCCC-------CCCCCCCCeEEEEcCCChhHHHHHHHHHHcCCCcEEEcCcchHhhh
Q 029506 3 VMNSLLSQY--NLFVQAFASDPL-------ADLDKEKTDILMYCTGGIRCDVYSTILRQRGFHNLYTLKGGVSHYL 69 (192)
Q Consensus 3 ~rn~~E~~~--g~f~gai~~~pl-------~el~k~~k~IvlyC~~G~Rs~~Aa~~L~~~Gf~~Vy~L~GGi~~w~ 69 (192)
||++.|+.. ||||+++ ++|+ ..++++ ++||+||.+|.|+..++..|+..||++|+.|+||+.+|.
T Consensus 22 vR~~~e~~~~~~hi~ga~-~ip~~~~~~~~~~~~~~-~~ivv~c~~g~~s~~a~~~l~~~G~~~v~~l~gG~~~w~ 95 (96)
T cd01444 22 VRDPASYAALPDHIPGAI-HLDEDSLDDWLGDLDRD-RPVVVYCYHGNSSAQLAQALREAGFTDVRSLAGGFEAWR 95 (96)
T ss_pred CCCHHHHhcccCCCCCCe-eCCHHHHHHHHhhcCCC-CCEEEEeCCCChHHHHHHHHHHcCCceEEEcCCCHHHhc
Confidence 799999999 9999999 7774 445666 799999999999999999999999999999999999996
No 20
>smart00450 RHOD Rhodanese Homology Domain. An alpha beta fold found duplicated in the Rhodanese protein. The the Cysteine containing enzymatically active version of the domain is also found in the CDC25 class of protein phosphatases and a variety of proteins such as sulfide dehydrogenases and stress proteins such as Senesence specific protein 1 in plants, PspE and GlpE in bacteria and cyanide and arsenate resistance proteins. Inactive versions with a loss of the cysteine are also seen in Dual specificity phosphatases, ubiquitin hydrolases from yeast and in sulfuryltransferases. These are likely to play a role in protein interactions.
Probab=99.47 E-value=1.7e-13 Score=97.30 Aligned_cols=70 Identities=30% Similarity=0.516 Sum_probs=61.3
Q ss_pred ccChhhhhcCCCccccccCCCCC---------------------CCCCCCeEEEEcCCChhHHHHHHHHHHcCCCcEEEc
Q 029506 3 VMNSLLSQYNLFVQAFASDPLAD---------------------LDKEKTDILMYCTGGIRCDVYSTILRQRGFHNLYTL 61 (192)
Q Consensus 3 ~rn~~E~~~g~f~gai~~~pl~e---------------------l~k~~k~IvlyC~~G~Rs~~Aa~~L~~~Gf~~Vy~L 61 (192)
||++.|+..||||+|+ ++|+.. ++++ ++||+||.+|.|+..++..|++.||++|+.|
T Consensus 10 vR~~~e~~~~hi~ga~-~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~iv~~c~~g~~a~~~~~~l~~~G~~~v~~l 87 (100)
T smart00450 10 VRSPEEYEGGHIPGAV-NIPLSELLDRRGELDILEFEELLKRLGLDKD-KPVVVYCRSGNRSAKAAWLLRELGFKNVYLL 87 (100)
T ss_pred CCCHHHhccCCCCCce-eCCHHHhccCCCCcCHHHHHHHHHHcCCCCC-CeEEEEeCCCcHHHHHHHHHHHcCCCceEEe
Confidence 7999999999999999 776321 2344 7999999999999999999999999999999
Q ss_pred CcchHhhhhhcCC
Q 029506 62 KGGVSHYLENEGP 74 (192)
Q Consensus 62 ~GGi~~w~~~~~p 74 (192)
.||+.+|...+.|
T Consensus 88 ~GG~~~w~~~~~~ 100 (100)
T smart00450 88 DGGYKEWSAAGPP 100 (100)
T ss_pred cCCHHHHHhcCCC
Confidence 9999999987654
No 21
>cd01528 RHOD_2 Member of the Rhodanese Homology Domain superfamily, subgroup 2. Subgroup 2 includes uncharacterized putative rhodanese-related domains.
Probab=99.44 E-value=2.4e-13 Score=100.21 Aligned_cols=67 Identities=25% Similarity=0.472 Sum_probs=59.4
Q ss_pred ccChhhhhcCCCccccccCCCC-------CCC---CCCCeEEEEcCCChhHHHHHHHHHHcCCCcEEEcCcchHhhhhh
Q 029506 3 VMNSLLSQYNLFVQAFASDPLA-------DLD---KEKTDILMYCTGGIRCDVYSTILRQRGFHNLYTLKGGVSHYLEN 71 (192)
Q Consensus 3 ~rn~~E~~~g~f~gai~~~pl~-------el~---k~~k~IvlyC~~G~Rs~~Aa~~L~~~Gf~~Vy~L~GGi~~w~~~ 71 (192)
||++.|+..+|||||+ ++|+. +++ ++ ++||+||.+|.||..++.+|.+.||++|+.|.||+.+|...
T Consensus 23 vR~~~e~~~~hI~ga~-~ip~~~~~~~~~~~~~~~~~-~~vv~~c~~g~rs~~~~~~l~~~G~~~v~~l~GG~~~w~~~ 99 (101)
T cd01528 23 VREPEELEIAFLPGFL-HLPMSEIPERSKELDSDNPD-KDIVVLCHHGGRSMQVAQWLLRQGFENVYNLQGGIDAWSLE 99 (101)
T ss_pred CCCHHHHhcCcCCCCE-ecCHHHHHHHHHHhcccCCC-CeEEEEeCCCchHHHHHHHHHHcCCccEEEecCCHHHHhhh
Confidence 7999999999999999 87742 233 35 79999999999999999999999999999999999999764
No 22
>cd01530 Cdc25 Cdc25 phosphatases are members of the Rhodanese Homology Domain superfamily. They activate the cell division kinases throughout the cell cycle progression. Cdc25 phosphatases dephosphorylate phosphotyrosine and phosphothreonine residues, in order to activate their Cdk/cyclin substrates. Cdc25A phosphatase functions to regulate S phase entry and Cdc25B is required for G2/M phase transition of the cell cycle. The Cdc25 domain binds oxyanions at the catalytic site and has the signature motif (H/YCxxxxxR).
Probab=99.43 E-value=1.8e-13 Score=105.51 Aligned_cols=65 Identities=17% Similarity=0.225 Sum_probs=57.7
Q ss_pred ccChhhhhcCCCccccccCCCCC--------------CCCCCCeEEEEcC-CChhHHHHHHHHHHc------------CC
Q 029506 3 VMNSLLSQYNLFVQAFASDPLAD--------------LDKEKTDILMYCT-GGIRCDVYSTILRQR------------GF 55 (192)
Q Consensus 3 ~rn~~E~~~g~f~gai~~~pl~e--------------l~k~~k~IvlyC~-~G~Rs~~Aa~~L~~~------------Gf 55 (192)
||++.|++.||||+|+ ++|+.+ ++++ ++||+||. +|.||..|+.+|+++ ||
T Consensus 29 vR~~~e~~~ghI~gA~-~ip~~~~l~~~~~~~~~~~~~~~~-~~vv~yC~~sg~rs~~aa~~L~~~~~~~~~~~~~~~g~ 106 (121)
T cd01530 29 CRFPYEYNGGHIKGAV-NLSTKDELEEFFLDKPGVASKKKR-RVLIFHCEFSSKRGPRMARHLRNLDRELNSNRYPLLYY 106 (121)
T ss_pred CCCHHHHhCCcCCCCE-eCCcHHHHHHHHHHhhcccccCCC-CEEEEECCCccccHHHHHHHHHHHhhhhccccCCCCCC
Confidence 8999999999999999 887531 3455 79999997 999999999999985 99
Q ss_pred CcEEEcCcchHhhh
Q 029506 56 HNLYTLKGGVSHYL 69 (192)
Q Consensus 56 ~~Vy~L~GGi~~w~ 69 (192)
.+||.|+|||.+|.
T Consensus 107 ~~v~~L~GG~~~f~ 120 (121)
T cd01530 107 PEIYILEGGYKNFF 120 (121)
T ss_pred CeEEEEcChhHhhc
Confidence 99999999999985
No 23
>cd01521 RHOD_PspE2 Member of the Rhodanese Homology Domain superfamily. This CD includes the putative rhodanese-like protein, Psp2, of Yersinia pestis biovar Medievalis and other similar uncharacterized proteins.
Probab=99.42 E-value=4.4e-13 Score=100.72 Aligned_cols=70 Identities=21% Similarity=0.286 Sum_probs=61.0
Q ss_pred ccChhhhhcCCCccccccCCCCC--------CCCCCCeEEEEcCCC--hhHHHHHHHHHHcCCCcEEEcCcchHhhhhhc
Q 029506 3 VMNSLLSQYNLFVQAFASDPLAD--------LDKEKTDILMYCTGG--IRCDVYSTILRQRGFHNLYTLKGGVSHYLENE 72 (192)
Q Consensus 3 ~rn~~E~~~g~f~gai~~~pl~e--------l~k~~k~IvlyC~~G--~Rs~~Aa~~L~~~Gf~~Vy~L~GGi~~w~~~~ 72 (192)
||++.|+..||||||+ ++|... ++++ ++||+||.+| .++..++..|++.||+ |+.|.||+.+|...+
T Consensus 31 vR~~~e~~~ghIpgA~-~ip~~~l~~~~~~~i~~~-~~vvvyc~~g~~~~s~~~a~~l~~~G~~-v~~l~GG~~~W~~~g 107 (110)
T cd01521 31 VRSAEAYARGHVPGAI-NLPHREICENATAKLDKE-KLFVVYCDGPGCNGATKAALKLAELGFP-VKEMIGGLDWWKREG 107 (110)
T ss_pred CCCHHHHhcCCCCCCE-eCCHHHhhhHhhhcCCCC-CeEEEEECCCCCchHHHHHHHHHHcCCe-EEEecCCHHHHHHCC
Confidence 7999999999999999 777432 4555 7999999988 4899999999999995 999999999999988
Q ss_pred CCc
Q 029506 73 GPV 75 (192)
Q Consensus 73 ~p~ 75 (192)
.|+
T Consensus 108 ~~~ 110 (110)
T cd01521 108 YAT 110 (110)
T ss_pred CCC
Confidence 773
No 24
>cd01447 Polysulfide_ST Polysulfide-sulfurtransferase - Rhodanese Homology Domain. This domain is believed to serve as a polysulfide binding and transferase domain in anaerobic gram-negative bacteria, functioning in oxidative phosphorylation with polysulfide-sulfur as a terminal electron acceptor. The active site contains the same conserved cysteine that is the catalytic residue in other Rhodanese Homology Domain proteins.
Probab=99.41 E-value=3.2e-13 Score=98.62 Aligned_cols=67 Identities=21% Similarity=0.472 Sum_probs=58.5
Q ss_pred ccChhhh-hcCCCccccccCCCCC---------------CCCCCCeEEEEcCCChhHHHHHHHHHHcCCCcEEEcCcchH
Q 029506 3 VMNSLLS-QYNLFVQAFASDPLAD---------------LDKEKTDILMYCTGGIRCDVYSTILRQRGFHNLYTLKGGVS 66 (192)
Q Consensus 3 ~rn~~E~-~~g~f~gai~~~pl~e---------------l~k~~k~IvlyC~~G~Rs~~Aa~~L~~~Gf~~Vy~L~GGi~ 66 (192)
||++.|+ ..||||+|+ ++|+.. ++++ ++||+||.+|.|+..++..|+..||++|+.|.||+.
T Consensus 20 vR~~~~~~~~ghIpga~-~ip~~~~~~~~~~~~~~~~~~~~~~-~~ivv~c~~g~~s~~~~~~l~~~G~~~v~~l~Gg~~ 97 (103)
T cd01447 20 VRDPRELERTGMIPGAF-HAPRGMLEFWADPDSPYHKPAFAED-KPFVFYCASGWRSALAGKTLQDMGLKPVYNIEGGFK 97 (103)
T ss_pred CCCHHHHHhcCCCCCcE-EcccchhhhhcCccccccccCCCCC-CeEEEEcCCCCcHHHHHHHHHHcChHHhEeecCcHH
Confidence 7999998 579999999 777422 4556 799999999999999999999999999999999999
Q ss_pred hhhhh
Q 029506 67 HYLEN 71 (192)
Q Consensus 67 ~w~~~ 71 (192)
+|...
T Consensus 98 ~w~~~ 102 (103)
T cd01447 98 DWKEA 102 (103)
T ss_pred HHhhc
Confidence 99754
No 25
>cd01524 RHOD_Pyr_redox Member of the Rhodanese Homology Domain superfamily. Included in this CD are the Lactococcus lactis NADH oxidase, Bacillus cereus NADH dehydrogenase, and Bacteroides thetaiotaomicron pyridine nucleotide-disulphide oxidoreductase, and similar rhodanese-like domains found C-terminal of the pyridine nucleotide-disulphide oxidoreductase (Pyr-redox) domain and the Pyr-redox dimerization domain.
Probab=99.41 E-value=3.9e-13 Score=97.32 Aligned_cols=64 Identities=31% Similarity=0.531 Sum_probs=58.1
Q ss_pred ccChhhhhcCCCccccccCCC-------CCCCCCCCeEEEEcCCChhHHHHHHHHHHcCCCcEEEcCcchHhhh
Q 029506 3 VMNSLLSQYNLFVQAFASDPL-------ADLDKEKTDILMYCTGGIRCDVYSTILRQRGFHNLYTLKGGVSHYL 69 (192)
Q Consensus 3 ~rn~~E~~~g~f~gai~~~pl-------~el~k~~k~IvlyC~~G~Rs~~Aa~~L~~~Gf~~Vy~L~GGi~~w~ 69 (192)
||++.|+..||||+|+ ++|+ ..++++ ++||+||.+|.|+..++..|++.|| +|+.|.||+.+|+
T Consensus 19 ~R~~~~~~~~hipgA~-~ip~~~~~~~~~~~~~~-~~vvl~c~~g~~a~~~a~~L~~~G~-~v~~l~GG~~~w~ 89 (90)
T cd01524 19 VRTPQEFEKGHIKGAI-NIPLDELRDRLNELPKD-KEIIVYCAVGLRGYIAARILTQNGF-KVKNLDGGYKTYS 89 (90)
T ss_pred CCCHHHHhcCCCCCCE-eCCHHHHHHHHHhcCCC-CcEEEEcCCChhHHHHHHHHHHCCC-CEEEecCCHHHhc
Confidence 7999999999999999 7773 345666 7999999999999999999999999 8999999999996
No 26
>cd01532 4RHOD_Repeat_1 Member of the Rhodanese Homology Domain superfamily, repeat 1. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 1st repeat which does not contain the putative catalytic Cys residue.
Probab=99.40 E-value=6.2e-13 Score=97.07 Aligned_cols=66 Identities=21% Similarity=0.290 Sum_probs=57.3
Q ss_pred ccChhhhhcCCCccccccCCCCC--------CC-CCCCeEEEEcCCChh--HHHHHHHHHHcCCCcEEEcCcchHhhhh
Q 029506 3 VMNSLLSQYNLFVQAFASDPLAD--------LD-KEKTDILMYCTGGIR--CDVYSTILRQRGFHNLYTLKGGVSHYLE 70 (192)
Q Consensus 3 ~rn~~E~~~g~f~gai~~~pl~e--------l~-k~~k~IvlyC~~G~R--s~~Aa~~L~~~Gf~~Vy~L~GGi~~w~~ 70 (192)
||++.|+..+|||+++ ++|+.+ ++ ++ +|||+||.+|.| +..|+..|++.||++|+.|+||+.+|..
T Consensus 16 vR~~~e~~~~hi~ga~-~ip~~~~~~~~~~~~~~~~-~~ivl~c~~G~~~~s~~aa~~L~~~G~~~v~~l~GG~~~W~~ 92 (92)
T cd01532 16 VREEDPFAQSHPLWAA-NLPLSRLELDAWVRIPRRD-TPIVVYGEGGGEDLAPRAARRLSELGYTDVALLEGGLQGWRA 92 (92)
T ss_pred CCCHHHHhhCCcccCe-eCCHHHHHhhhHhhCCCCC-CeEEEEeCCCCchHHHHHHHHHHHcCccCEEEccCCHHHHcC
Confidence 7999999999999999 777432 23 24 799999999998 6899999999999999999999999963
No 27
>cd01522 RHOD_1 Member of the Rhodanese Homology Domain superfamily, subgroup 1. This CD includes the putative rhodanese-related sulfurtransferases of several uncharacterized proteins.
Probab=99.39 E-value=4.4e-13 Score=102.29 Aligned_cols=67 Identities=21% Similarity=0.259 Sum_probs=59.9
Q ss_pred ccChhhhh-cCCCccccccCCCCCC-----------------CCCCCeEEEEcCCChhHHHHHHHHHHcCCCcEEEcCcc
Q 029506 3 VMNSLLSQ-YNLFVQAFASDPLADL-----------------DKEKTDILMYCTGGIRCDVYSTILRQRGFHNLYTLKGG 64 (192)
Q Consensus 3 ~rn~~E~~-~g~f~gai~~~pl~el-----------------~k~~k~IvlyC~~G~Rs~~Aa~~L~~~Gf~~Vy~L~GG 64 (192)
||++.|++ .||||+++ ++|+.++ +++ ++||+||.+|.||..++..|++.||++|+.+.||
T Consensus 21 vR~~~e~~~~ghIpgA~-~ip~~~~~~~~~~~~~~~~l~~~~~~~-~~ivv~C~~G~rs~~aa~~L~~~G~~~v~~l~gG 98 (117)
T cd01522 21 VRTEAEWKFVGGVPDAV-HVAWQVYPDMEINPNFLAELEEKVGKD-RPVLLLCRSGNRSIAAAEAAAQAGFTNVYNVLEG 98 (117)
T ss_pred CCCHHHHhcccCCCCce-ecchhhccccccCHHHHHHHHhhCCCC-CeEEEEcCCCccHHHHHHHHHHCCCCeEEECcCc
Confidence 89999999 99999999 8775432 355 7999999999999999999999999999999999
Q ss_pred hHhhhhh
Q 029506 65 VSHYLEN 71 (192)
Q Consensus 65 i~~w~~~ 71 (192)
|.+|...
T Consensus 99 ~~~~~~~ 105 (117)
T cd01522 99 FEGDLDA 105 (117)
T ss_pred eecCCCC
Confidence 9999764
No 28
>TIGR02981 phageshock_pspE phage shock operon rhodanese PspE. Members of this very narrowly defined protein family are proteins active as rhodanese (EC 2.8.1.1) and found in the extended variants of the phage shock protein (psp operon) in Escherichia coli and a few closely related species. Note that the designation phage shock protein PspE has been applied, incorrectly, in many instances where the genome lacks the phage shock regulon entirely.
Probab=99.38 E-value=5.6e-13 Score=100.46 Aligned_cols=65 Identities=23% Similarity=0.375 Sum_probs=57.2
Q ss_pred ccChhhhhcCCCccccccCCCCCC---------CCCCCeEEEEcCCChhHHHHHHHHHHcCCCcEEEcCcchHhhhh
Q 029506 3 VMNSLLSQYNLFVQAFASDPLADL---------DKEKTDILMYCTGGIRCDVYSTILRQRGFHNLYTLKGGVSHYLE 70 (192)
Q Consensus 3 ~rn~~E~~~g~f~gai~~~pl~el---------~k~~k~IvlyC~~G~Rs~~Aa~~L~~~Gf~~Vy~L~GGi~~w~~ 70 (192)
||++.|+..||||||+ ++|+.++ +++ ++||+||.+|.||..++..|+++||++|+.+ ||+.+|..
T Consensus 24 vR~~~ef~~ghIpgAi-nip~~~l~~~l~~~~~~~~-~~vvlyC~~G~rS~~aa~~L~~~G~~~v~~~-GG~~~~~~ 97 (101)
T TIGR02981 24 VRIPEQYQQEHIQGAI-NIPLKEIKEHIATAVPDKN-DTVKLYCNAGRQSGMAKDILLDMGYTHAENA-GGIKDIAM 97 (101)
T ss_pred CCCHHHHhcCCCCCCE-ECCHHHHHHHHHHhCCCCC-CeEEEEeCCCHHHHHHHHHHHHcCCCeEEec-CCHHHhhh
Confidence 7999999999999999 8885332 234 6899999999999999999999999999986 99999964
No 29
>cd01535 4RHOD_Repeat_4 Member of the Rhodanese Homology Domain superfamily, repeat 4. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 4th repeat which, in general, contains the putative catalytic Cys residue.
Probab=99.36 E-value=1.2e-12 Score=104.25 Aligned_cols=72 Identities=18% Similarity=0.220 Sum_probs=64.6
Q ss_pred ccChhhhhcCCCccccccCC-------CCCCCCCCCeEEEEcCCChhHHHHHHHHHHcCCCcEEEcCcchHhhhhhcCCc
Q 029506 3 VMNSLLSQYNLFVQAFASDP-------LADLDKEKTDILMYCTGGIRCDVYSTILRQRGFHNLYTLKGGVSHYLENEGPV 75 (192)
Q Consensus 3 ~rn~~E~~~g~f~gai~~~p-------l~el~k~~k~IvlyC~~G~Rs~~Aa~~L~~~Gf~~Vy~L~GGi~~w~~~~~p~ 75 (192)
||.+.|+..||||||+ ++| +.+++++ .+||+||.+|.++..++..|+..||++|+.|.||+.+|...+.|+
T Consensus 17 vR~~~e~~~gHIpgAi-~~~~~~l~~~l~~l~~~-~~vVv~c~~g~~a~~aa~~L~~~G~~~v~~L~GG~~aW~~~g~pl 94 (145)
T cd01535 17 VTASANYVKRHIPGAW-WVLRAQLAQALEKLPAA-ERYVLTCGSSLLARFAAADLAALTVKPVFVLEGGTAAWIAAGLPV 94 (145)
T ss_pred CCCHHHHHcCCCCCce-eCCHHHHHHHHHhcCCC-CCEEEEeCCChHHHHHHHHHHHcCCcCeEEecCcHHHHHHCCCCc
Confidence 7999999999999999 665 3345655 799999999999999999999999999999999999999999986
Q ss_pred e
Q 029506 76 E 76 (192)
Q Consensus 76 ~ 76 (192)
.
T Consensus 95 ~ 95 (145)
T cd01535 95 E 95 (145)
T ss_pred c
Confidence 4
No 30
>cd01449 TST_Repeat_2 Thiosulfate sulfurtransferase (TST), C-terminal, catalytic domain. TST contains 2 copies of the Rhodanese Homology Domain; this is the second repeat. Only the second repeat contains the catalytically active Cys residue.
Probab=99.35 E-value=9.8e-13 Score=98.80 Aligned_cols=65 Identities=17% Similarity=0.272 Sum_probs=57.1
Q ss_pred ccChhhhhc-----------CCCccccccCCCCC----------------------CCCCCCeEEEEcCCChhHHHHHHH
Q 029506 3 VMNSLLSQY-----------NLFVQAFASDPLAD----------------------LDKEKTDILMYCTGGIRCDVYSTI 49 (192)
Q Consensus 3 ~rn~~E~~~-----------g~f~gai~~~pl~e----------------------l~k~~k~IvlyC~~G~Rs~~Aa~~ 49 (192)
||++.|+.. ||||||+ ++|+.+ ++++ ++||+||.+|.||..++..
T Consensus 20 vR~~~e~~~~~~~~~~~~~~ghIpgA~-~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~iv~yc~~g~~s~~~~~~ 97 (118)
T cd01449 20 ARSPERFRGEVPEPRPGLRSGHIPGAV-NIPWTSLLDEDGTFKSPEELRALFAALGITPD-KPVIVYCGSGVTACVLLLA 97 (118)
T ss_pred CCCHHHcCCcCCCCCCCCcCCcCCCCc-ccChHHhcCCCCCcCCHHHHHHHHHHcCCCCC-CCEEEECCcHHHHHHHHHH
Confidence 799988876 9999999 777532 2345 7999999999999999999
Q ss_pred HHHcCCCcEEEcCcchHhhh
Q 029506 50 LRQRGFHNLYTLKGGVSHYL 69 (192)
Q Consensus 50 L~~~Gf~~Vy~L~GGi~~w~ 69 (192)
|+..||++|+.|.||+.+|.
T Consensus 98 l~~~G~~~v~~l~GG~~~W~ 117 (118)
T cd01449 98 LELLGYKNVRLYDGSWSEWG 117 (118)
T ss_pred HHHcCCCCeeeeCChHHHhc
Confidence 99999999999999999996
No 31
>TIGR03865 PQQ_CXXCW PQQ-dependent catabolism-associated CXXCW motif protein. Members of this protein family have a CXXXCW motif, consistent with a possible role in redox cofactor binding. This protein family shows strong relationships by phylogenetic profiling and conserved gene neighborhoods with a transport system for alcohols metabolized by PQQ-dependent enzymes.
Probab=99.34 E-value=1.8e-12 Score=104.99 Aligned_cols=48 Identities=19% Similarity=0.339 Sum_probs=44.2
Q ss_pred CCCCCeEEEEcCCCh-hHHHHHHHHHHcCCCcEEEcCcchHhhhhhcCCc
Q 029506 27 DKEKTDILMYCTGGI-RCDVYSTILRQRGFHNLYTLKGGVSHYLENEGPV 75 (192)
Q Consensus 27 ~k~~k~IvlyC~~G~-Rs~~Aa~~L~~~Gf~~Vy~L~GGi~~w~~~~~p~ 75 (192)
+++ ++||+||.+|. ||..++..|++.||++|++|.||+.+|...++|+
T Consensus 114 ~~d-~~IVvYC~~G~~~S~~aa~~L~~~G~~~V~~l~GG~~aW~~aG~Pv 162 (162)
T TIGR03865 114 DKD-RPLVFYCLADCWMSWNAAKRALAYGYSNVYWYPDGTDGWQAAGLPL 162 (162)
T ss_pred CCC-CEEEEEECCCCHHHHHHHHHHHhcCCcceEEecCCHHHHHHcCCCC
Confidence 355 79999999996 8999999999999999999999999999999884
No 32
>PRK10287 thiosulfate:cyanide sulfurtransferase; Provisional
Probab=99.32 E-value=2.4e-12 Score=97.64 Aligned_cols=65 Identities=23% Similarity=0.349 Sum_probs=56.9
Q ss_pred ccChhhhhcCCCccccccCCCCC-------C--CCCCCeEEEEcCCChhHHHHHHHHHHcCCCcEEEcCcchHhhhh
Q 029506 3 VMNSLLSQYNLFVQAFASDPLAD-------L--DKEKTDILMYCTGGIRCDVYSTILRQRGFHNLYTLKGGVSHYLE 70 (192)
Q Consensus 3 ~rn~~E~~~g~f~gai~~~pl~e-------l--~k~~k~IvlyC~~G~Rs~~Aa~~L~~~Gf~~Vy~L~GGi~~w~~ 70 (192)
||++.|++.||||+|+ ++|+.+ + +++ ++||+||.+|.||..++..|.+.||++|++ .||+.+|.-
T Consensus 26 vR~~~ef~~ghIpGAi-niP~~~l~~~l~~l~~~~~-~~IVlyC~~G~rS~~aa~~L~~~G~~~v~~-~GG~~~~~~ 99 (104)
T PRK10287 26 VRVPEQYQQEHVQGAI-NIPLKEVKERIATAVPDKN-DTVKLYCNAGRQSGQAKEILSEMGYTHAEN-AGGLKDIAM 99 (104)
T ss_pred CCCHHHHhcCCCCccE-ECCHHHHHHHHHhcCCCCC-CeEEEEeCCChHHHHHHHHHHHcCCCeEEe-cCCHHHHhh
Confidence 7999999999999999 887432 2 234 689999999999999999999999999987 699999964
No 33
>cd01448 TST_Repeat_1 Thiosulfate sulfurtransferase (TST), N-terminal, inactive domain. TST contains 2 copies of the Rhodanese Homology Domain; this is the 1st repeat, which does not contain the catalytically active Cys residue. The role of the 1st repeat is uncertain, but it is believed to be involved in protein interaction.
Probab=99.32 E-value=3.1e-12 Score=96.96 Aligned_cols=67 Identities=18% Similarity=0.167 Sum_probs=58.0
Q ss_pred ccCh-------hhhhcCCCccccccCCCCC--------------------------CCCCCCeEEEEcCC-ChhHHHHHH
Q 029506 3 VMNS-------LLSQYNLFVQAFASDPLAD--------------------------LDKEKTDILMYCTG-GIRCDVYST 48 (192)
Q Consensus 3 ~rn~-------~E~~~g~f~gai~~~pl~e--------------------------l~k~~k~IvlyC~~-G~Rs~~Aa~ 48 (192)
||++ .|+..||||+|+ ++|+.+ ++++ ++||+||.+ |.++..++.
T Consensus 21 vR~~~~~~~~~~~~~~ghI~ga~-~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~vv~~c~~g~~~a~~~~~ 98 (122)
T cd01448 21 ARWYLPDRDGRKEYLEGHIPGAV-FFDLDEDLDDKSPGPHMLPSPEEFAELLGSLGISND-DTVVVYDDGGGFFAARAWW 98 (122)
T ss_pred eecCCCCCchhhHHhhCCCCCCE-EcChhhccccCCCCCCCCCCHHHHHHHHHHcCCCCC-CEEEEECCCCCccHHHHHH
Confidence 6777 899999999999 777433 2345 799999999 599999999
Q ss_pred HHHHcCCCcEEEcCcchHhhhhh
Q 029506 49 ILRQRGFHNLYTLKGGVSHYLEN 71 (192)
Q Consensus 49 ~L~~~Gf~~Vy~L~GGi~~w~~~ 71 (192)
.|+.+||++|+.|.||+.+|...
T Consensus 99 ~l~~~G~~~v~~l~GG~~~W~~~ 121 (122)
T cd01448 99 TLRYFGHENVRVLDGGLQAWKAE 121 (122)
T ss_pred HHHHcCCCCEEEecCCHHHHHhC
Confidence 99999999999999999999865
No 34
>cd00158 RHOD Rhodanese Homology Domain (RHOD); an alpha beta fold domain found duplicated in the rhodanese protein. The cysteine containing enzymatically active version of the domain is also found in the Cdc25 class of protein phosphatases and a variety of proteins such as sulfide dehydrogenases and certain stress proteins such as senesence specific protein 1 in plants, PspE and GlpE in bacteria and cyanide and arsenate resistance proteins. Inactive versions (no active site cysteine) are also seen in dual specificity phosphatases, ubiquitin hydrolases from yeast and in sulfuryltransferases, where they are believed to play a regulatory role in multidomain proteins.
Probab=99.31 E-value=4.1e-12 Score=89.32 Aligned_cols=65 Identities=31% Similarity=0.505 Sum_probs=57.9
Q ss_pred ccChhhhhcCCCccccccCCCC---------CCCCCCCeEEEEcCCChhHHHHHHHHHHcCCCcEEEcCcchHhhh
Q 029506 3 VMNSLLSQYNLFVQAFASDPLA---------DLDKEKTDILMYCTGGIRCDVYSTILRQRGFHNLYTLKGGVSHYL 69 (192)
Q Consensus 3 ~rn~~E~~~g~f~gai~~~pl~---------el~k~~k~IvlyC~~G~Rs~~Aa~~L~~~Gf~~Vy~L~GGi~~w~ 69 (192)
+|++.|++.+|||+++ ++|+. .++++ ++||+||.+|.++..++..|++.||.+|+.|.||+.+|.
T Consensus 16 ~R~~~~~~~~~i~ga~-~~~~~~~~~~~~~~~~~~~-~~vv~~c~~~~~a~~~~~~l~~~G~~~v~~l~gG~~~w~ 89 (89)
T cd00158 16 VREPEEYAAGHIPGAI-NIPLSELEERAALLELDKD-KPIVVYCRSGNRSARAAKLLRKAGGTNVYNLEGGMLAWK 89 (89)
T ss_pred CCCHHHHhccccCCCE-ecchHHHhhHHHhhccCCC-CeEEEEeCCCchHHHHHHHHHHhCcccEEEecCChhhcC
Confidence 7999999999999999 77642 23455 799999999999999999999999999999999999994
No 35
>cd01531 Acr2p Eukaryotic arsenate resistance proteins are members of the Rhodanese Homology Domain superfamily. Included in this CD is the Saccharomyces cerevisiae arsenate reductase protein, Acr2p, and other yeast and plant homologs.
Probab=99.28 E-value=3.6e-12 Score=96.02 Aligned_cols=67 Identities=13% Similarity=0.239 Sum_probs=56.3
Q ss_pred cccChhhhhcCCCccccccCCCCCC-------------CCCCCeEEEEcC-CChhHHHHHHHHHH--------cCCCcEE
Q 029506 2 MVMNSLLSQYNLFVQAFASDPLADL-------------DKEKTDILMYCT-GGIRCDVYSTILRQ--------RGFHNLY 59 (192)
Q Consensus 2 ~~rn~~E~~~g~f~gai~~~pl~el-------------~k~~k~IvlyC~-~G~Rs~~Aa~~L~~--------~Gf~~Vy 59 (192)
-||++ |+..||||||+ ++|+.++ +++ ++||+||. +|.|+..++..|.+ .||.+|+
T Consensus 24 DvR~~-e~~~~hi~gA~-~ip~~~l~~~~~~~~~~~~~~~~-~~iv~yC~~~~~r~~~aa~~l~~~~~~~~~~~G~~~v~ 100 (113)
T cd01531 24 DVRDE-DYAGGHIKGSW-HYPSTRFKAQLNQLVQLLSGSKK-DTVVFHCALSQVRGPSAARKFLRYLDEEDLETSKFEVY 100 (113)
T ss_pred EcCCc-ccCCCcCCCCE-ecCHHHHhhCHHHHHHHHhcCCC-CeEEEEeecCCcchHHHHHHHHHHHHHhccccCCCeEE
Confidence 38999 99999999999 8875433 234 69999998 78999999998865 4999999
Q ss_pred EcCcchHhhhhh
Q 029506 60 TLKGGVSHYLEN 71 (192)
Q Consensus 60 ~L~GGi~~w~~~ 71 (192)
+|.|||.+|...
T Consensus 101 ~l~gG~~~w~~~ 112 (113)
T cd01531 101 VLHGGFNAWESS 112 (113)
T ss_pred EEcChHHHHHhh
Confidence 999999999864
No 36
>PRK08762 molybdopterin biosynthesis protein MoeB; Validated
Probab=99.28 E-value=5.8e-12 Score=113.78 Aligned_cols=71 Identities=21% Similarity=0.360 Sum_probs=63.2
Q ss_pred ccChhhhhcCCCccccccCCCCC-------C--CCCCCeEEEEcCCChhHHHHHHHHHHcCCCcEEEcCcchHhhhhhcC
Q 029506 3 VMNSLLSQYNLFVQAFASDPLAD-------L--DKEKTDILMYCTGGIRCDVYSTILRQRGFHNLYTLKGGVSHYLENEG 73 (192)
Q Consensus 3 ~rn~~E~~~g~f~gai~~~pl~e-------l--~k~~k~IvlyC~~G~Rs~~Aa~~L~~~Gf~~Vy~L~GGi~~w~~~~~ 73 (192)
||++.||..||||+|+ ++|+.+ + +++ ++||+||.+|.||..|+..|++.||++|+.|.||+.+|...+.
T Consensus 23 vR~~~e~~~ghIpgAi-~ip~~~l~~~~~~~~~~~~-~~IvvyC~~G~rs~~aa~~L~~~G~~~v~~l~GG~~~W~~~g~ 100 (376)
T PRK08762 23 VREAHERASGQAEGAL-RIPRGFLELRIETHLPDRD-REIVLICASGTRSAHAAATLRELGYTRVASVAGGFSAWKDAGL 100 (376)
T ss_pred CCCHHHHhCCcCCCCE-ECCHHHHHHHHhhhcCCCC-CeEEEEcCCCcHHHHHHHHHHHcCCCceEeecCcHHHHHhcCC
Confidence 7999999999999999 777422 2 455 7999999999999999999999999999999999999998877
Q ss_pred Cc
Q 029506 74 PV 75 (192)
Q Consensus 74 p~ 75 (192)
|+
T Consensus 101 p~ 102 (376)
T PRK08762 101 PL 102 (376)
T ss_pred cc
Confidence 64
No 37
>PRK07878 molybdopterin biosynthesis-like protein MoeZ; Validated
Probab=99.26 E-value=8.5e-12 Score=113.63 Aligned_cols=71 Identities=24% Similarity=0.407 Sum_probs=63.6
Q ss_pred ccChhhhhcCCCccccccCCCC---------CCCCCCCeEEEEcCCChhHHHHHHHHHHcCCCcEEEcCcchHhhhhhcC
Q 029506 3 VMNSLLSQYNLFVQAFASDPLA---------DLDKEKTDILMYCTGGIRCDVYSTILRQRGFHNLYTLKGGVSHYLENEG 73 (192)
Q Consensus 3 ~rn~~E~~~g~f~gai~~~pl~---------el~k~~k~IvlyC~~G~Rs~~Aa~~L~~~Gf~~Vy~L~GGi~~w~~~~~ 73 (192)
||++.|+..||||||+ ++|+. +++++ ++||+||.+|.||..|+..|++.||++|+.|+||+.+|.....
T Consensus 309 vR~~~ef~~ghIpGAi-nip~~~l~~~~~~~~l~~d-~~iVvyC~~G~rS~~aa~~L~~~G~~~V~~L~GG~~~W~~~~~ 386 (392)
T PRK07878 309 VREPVEWDIVHIPGAQ-LIPKSEILSGEALAKLPQD-RTIVLYCKTGVRSAEALAALKKAGFSDAVHLQGGVVAWAKQVD 386 (392)
T ss_pred CCCHHHHhcCCCCCCE-EcChHHhcchhHHhhCCCC-CcEEEEcCCChHHHHHHHHHHHcCCCcEEEecCcHHHHHHhcC
Confidence 8999999999999999 77753 34566 7999999999999999999999999999999999999998766
Q ss_pred Cc
Q 029506 74 PV 75 (192)
Q Consensus 74 p~ 75 (192)
|.
T Consensus 387 ~~ 388 (392)
T PRK07878 387 PS 388 (392)
T ss_pred CC
Confidence 53
No 38
>PRK07411 hypothetical protein; Validated
Probab=99.23 E-value=1.1e-11 Score=113.00 Aligned_cols=70 Identities=23% Similarity=0.294 Sum_probs=61.9
Q ss_pred ccChhhhhcCCCccccccCCCCC------------CCCCCCeEEEEcCCChhHHHHHHHHHHcCCCcEEEcCcchHhhhh
Q 029506 3 VMNSLLSQYNLFVQAFASDPLAD------------LDKEKTDILMYCTGGIRCDVYSTILRQRGFHNLYTLKGGVSHYLE 70 (192)
Q Consensus 3 ~rn~~E~~~g~f~gai~~~pl~e------------l~k~~k~IvlyC~~G~Rs~~Aa~~L~~~Gf~~Vy~L~GGi~~w~~ 70 (192)
||++.|++.||||||+ ++|+.+ ++++ ++||+||.+|.||..|+..|+++||+ +++|.||+.+|.+
T Consensus 305 VR~~~E~~~ghIpGAi-niP~~~l~~~~~~~~l~~l~~d-~~IVvyC~~G~RS~~aa~~L~~~G~~-~~~l~GG~~~W~~ 381 (390)
T PRK07411 305 VRNPNEYEIARIPGSV-LVPLPDIENGPGVEKVKELLNG-HRLIAHCKMGGRSAKALGILKEAGIE-GTNVKGGITAWSR 381 (390)
T ss_pred CCCHHHhccCcCCCCE-EccHHHhhcccchHHHhhcCCC-CeEEEECCCCHHHHHHHHHHHHcCCC-eEEecchHHHHHH
Confidence 8999999999999999 777433 3455 79999999999999999999999997 5689999999999
Q ss_pred hcCCc
Q 029506 71 NEGPV 75 (192)
Q Consensus 71 ~~~p~ 75 (192)
...|.
T Consensus 382 ~~~p~ 386 (390)
T PRK07411 382 EVDPS 386 (390)
T ss_pred hcCCC
Confidence 88775
No 39
>cd01443 Cdc25_Acr2p Cdc25 enzymes are members of the Rhodanese Homology Domain (RHOD) superfamily. Also included in this CD are eukaryotic arsenate resistance proteins such as Saccharomyces cerevisiae Acr2p and similar proteins. Cdc25 phosphatases activate the cell division kinases throughout the cell cycle progression. Cdc25 phosphatases dephosphorylate phosphotyrosine and phosphothreonine residues, in order to activate their Cdk/cyclin substrates. The Cdc25 and Acr2p RHOD domains have the signature motif (H/YCxxxxxR).
Probab=99.21 E-value=1.5e-11 Score=92.76 Aligned_cols=64 Identities=14% Similarity=0.154 Sum_probs=52.5
Q ss_pred ccChhhhhcCCCccccccCCCCCCC-------------CCCCeEEEEcCC-ChhHHHHHHHHHH----cCC--CcEEEcC
Q 029506 3 VMNSLLSQYNLFVQAFASDPLADLD-------------KEKTDILMYCTG-GIRCDVYSTILRQ----RGF--HNLYTLK 62 (192)
Q Consensus 3 ~rn~~E~~~g~f~gai~~~pl~el~-------------k~~k~IvlyC~~-G~Rs~~Aa~~L~~----~Gf--~~Vy~L~ 62 (192)
||++ |+..||||+|+ ++|+.++. +. ++||+||.+ |.|+..++..|++ .|| .+||+|.
T Consensus 29 vR~~-ef~~ghipgAi-~ip~~~~~~~~~~~~~~~~~~~~-~~iv~~C~~~g~rs~~a~~~l~~~l~~~G~~~~~v~~l~ 105 (113)
T cd01443 29 LRRD-DYEGGHIKGSI-NLPAQSCYQTLPQVYALFSLAGV-KLAIFYCGSSQGRGPRAARWFADYLRKVGESLPKSYILT 105 (113)
T ss_pred CCch-hcCCCcccCce-ecchhHHHHHHHHHHHHhhhcCC-CEEEEECCCCCcccHHHHHHHHHHHhccCCCCCeEEEEC
Confidence 8999 99999999999 88865432 23 689999986 6899888877654 465 7899999
Q ss_pred cchHhhh
Q 029506 63 GGVSHYL 69 (192)
Q Consensus 63 GGi~~w~ 69 (192)
||+.+|.
T Consensus 106 GG~~~w~ 112 (113)
T cd01443 106 GGIKAWY 112 (113)
T ss_pred Chhhhhc
Confidence 9999995
No 40
>PF00581 Rhodanese: Rhodanese-like domain This Prosite entry represents a subset of this family.; InterPro: IPR001763 Rhodanese, a sulphurtransferase involved in cyanide detoxification (see IPR001307 from INTERPRO) shares evolutionary relationship with a large family of proteins [], including Cdc25 phosphatase catalytic domain. non-catalytic domains of eukaryotic dual-specificity MAPK-phosphatases. non-catalytic domains of yeast PTP-type MAPK-phosphatases. non-catalytic domains of yeast Ubp4, Ubp5, Ubp7. non-catalytic domains of mammalian Ubp-Y. Drosophila heat shock protein HSP-67BB. several bacterial cold-shock and phage shock proteins. plant senescence associated proteins. catalytic and non-catalytic domains of rhodanese (see IPR001307 from INTERPRO). Rhodanese has an internal duplication. This domain is found as a single copy in other proteins, including phosphatases and ubiquitin C-terminal hydrolases [].; PDB: 2J6P_D 2FSX_A 1UAR_A 1OKG_A 1GMX_A 1GN0_A 3NTD_B 3NTA_B 3NT6_A 1C25_A ....
Probab=99.20 E-value=2.4e-11 Score=88.92 Aligned_cols=67 Identities=28% Similarity=0.545 Sum_probs=57.8
Q ss_pred ccChhhhhcCCCccccccCCCCC-----------------------CCCCCCeEEEEcCCChhHHHHHHH-----HHHcC
Q 029506 3 VMNSLLSQYNLFVQAFASDPLAD-----------------------LDKEKTDILMYCTGGIRCDVYSTI-----LRQRG 54 (192)
Q Consensus 3 ~rn~~E~~~g~f~gai~~~pl~e-----------------------l~k~~k~IvlyC~~G~Rs~~Aa~~-----L~~~G 54 (192)
||.+.|+..||||+++ ++|... ++++ ++||+||.+|.++..++.. |++.|
T Consensus 19 ~R~~~~~~~~hI~ga~-~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~iv~yc~~~~~~~~~~~~~~~~~l~~~g 96 (113)
T PF00581_consen 19 VRSPEEYERGHIPGAV-NIPFPSLDPDEPSLSEDKLDEFLKELGKKIDKD-KDIVFYCSSGWRSGSAAAARVAWILKKLG 96 (113)
T ss_dssp ESSHHHHHHSBETTEE-EEEGGGGSSSSSBCHHHHHHHHHHHHTHGSTTT-SEEEEEESSSCHHHHHHHHHHHHHHHHTT
T ss_pred eCCHHHHHcCCCCCCc-ccccccccccccccccccccccccccccccccc-ccceeeeecccccchhHHHHHHHHHHHcC
Confidence 7999999999999999 776511 2344 6899999999999998888 88899
Q ss_pred CCcEEEcCcchHhhhhh
Q 029506 55 FHNLYTLKGGVSHYLEN 71 (192)
Q Consensus 55 f~~Vy~L~GGi~~w~~~ 71 (192)
|++|+.|.||+.+|.++
T Consensus 97 ~~~v~~l~GG~~~w~~~ 113 (113)
T PF00581_consen 97 FKNVYILDGGFEAWKAE 113 (113)
T ss_dssp TSSEEEETTHHHHHHHH
T ss_pred CCCEEEecChHHHHhcC
Confidence 99999999999999863
No 41
>PRK05597 molybdopterin biosynthesis protein MoeB; Validated
Probab=99.18 E-value=2.7e-11 Score=109.18 Aligned_cols=66 Identities=23% Similarity=0.481 Sum_probs=59.4
Q ss_pred ccChhhhhcCCCccccccCCCCC---------CCCCCCeEEEEcCCChhHHHHHHHHHHcCCCcEEEcCcchHhhhh
Q 029506 3 VMNSLLSQYNLFVQAFASDPLAD---------LDKEKTDILMYCTGGIRCDVYSTILRQRGFHNLYTLKGGVSHYLE 70 (192)
Q Consensus 3 ~rn~~E~~~g~f~gai~~~pl~e---------l~k~~k~IvlyC~~G~Rs~~Aa~~L~~~Gf~~Vy~L~GGi~~w~~ 70 (192)
||++.|+..||||||+ ++|+.+ ++++ ++||+||.+|.||..|+..|++.||++|+.|+||+.+|..
T Consensus 280 VR~~~ef~~ghIpgAi-nip~~~l~~~~~~~~~~~~-~~IvvyC~~G~rS~~Aa~~L~~~G~~nV~~L~GGi~~W~~ 354 (355)
T PRK05597 280 VREPSEFAAYSIPGAH-NVPLSAIREGANPPSVSAG-DEVVVYCAAGVRSAQAVAILERAGYTGMSSLDGGIEGWLD 354 (355)
T ss_pred CCCHHHHccCcCCCCE-EeCHHHhhhccccccCCCC-CeEEEEcCCCHHHHHHHHHHHHcCCCCEEEecCcHHHHhh
Confidence 8999999999999999 887533 3455 7999999999999999999999999999999999999975
No 42
>TIGR03167 tRNA_sel_U_synt tRNA 2-selenouridine synthase. The Escherichia coli YbbB protein was shown to encode a selenophosphate-dependent tRNA 2-selenouridine synthase, essential for modification of some tRNAs to replace a sulfur atom with selenium. This enzyme works with SelD, the selenium donor protein, which also acts in selenocysteine incorporation. Although the members of this protein family show a fairly deep split, sequences from both sides of the split are supported by co-occurence with, and often proximity to, the selD gene.
Probab=99.18 E-value=3.6e-11 Score=107.03 Aligned_cols=69 Identities=28% Similarity=0.381 Sum_probs=59.2
Q ss_pred ccChhhhhcCCCccccccCCCCC-----------------------------------------CCCCCCeEEEEc-CCC
Q 029506 3 VMNSLLSQYNLFVQAFASDPLAD-----------------------------------------LDKEKTDILMYC-TGG 40 (192)
Q Consensus 3 ~rn~~E~~~g~f~gai~~~pl~e-----------------------------------------l~k~~k~IvlyC-~~G 40 (192)
||++.||..||||||+ ++|+.. ++++ ++||+|| ++|
T Consensus 8 VRsp~Ef~~ghipgAi-niPl~~~~er~~vgt~ykq~g~~~A~~lg~~~v~~~l~~~i~~~~~~~~~~-~~vvvyC~~gG 85 (311)
T TIGR03167 8 VRSPAEFAEGHLPGAI-NLPLLNDEERAEVGTLYKQVGPFAAIKLGLALVSPNLAAHVEQWRAFADGP-PQPLLYCWRGG 85 (311)
T ss_pred CCCHHHHhcCCCcCCE-ecccccchhhhhhhhhhhcccHHHHHHHhHhhhhHHHHHHHHHHHhhcCCC-CcEEEEECCCC
Confidence 8999999999999999 888732 1223 4599999 589
Q ss_pred hhHHHHHHHHHHcCCCcEEEcCcchHhhhhhcCC
Q 029506 41 IRCDVYSTILRQRGFHNLYTLKGGVSHYLENEGP 74 (192)
Q Consensus 41 ~Rs~~Aa~~L~~~Gf~~Vy~L~GGi~~w~~~~~p 74 (192)
.||..++.+|+++|| +|+.|.||+.+|...+.+
T Consensus 86 ~RS~~aa~~L~~~G~-~v~~L~GG~~aw~~~~~~ 118 (311)
T TIGR03167 86 MRSGSLAWLLAQIGF-RVPRLEGGYKAYRRFVID 118 (311)
T ss_pred hHHHHHHHHHHHcCC-CEEEecChHHHHHHhhhh
Confidence 999999999999999 699999999999876644
No 43
>PRK05600 thiamine biosynthesis protein ThiF; Validated
Probab=99.10 E-value=6.5e-11 Score=107.45 Aligned_cols=62 Identities=23% Similarity=0.403 Sum_probs=53.9
Q ss_pred ccChhhhhcCCCc---cccccCCCCCCC------------CCCCeEEEEcCCChhHHHHHHHHHHcCCCc-EEEcCcchH
Q 029506 3 VMNSLLSQYNLFV---QAFASDPLADLD------------KEKTDILMYCTGGIRCDVYSTILRQRGFHN-LYTLKGGVS 66 (192)
Q Consensus 3 ~rn~~E~~~g~f~---gai~~~pl~el~------------k~~k~IvlyC~~G~Rs~~Aa~~L~~~Gf~~-Vy~L~GGi~ 66 (192)
||++.||..|||| +|+ ++|+.++. ++ .|||+||.+|.||.+|+++|+++||++ ||+|+|||.
T Consensus 292 VR~~~E~~~ghI~~~~gAi-nIPl~~l~~~~~~~~~l~~~~~-~~Ivv~C~sG~RS~~Aa~~L~~~G~~~~v~~l~GG~~ 369 (370)
T PRK05600 292 VREPHEVLLKDLPEGGASL-KLPLSAITDDADILHALSPIDG-DNVVVYCASGIRSADFIEKYSHLGHELTLHNLPGGVN 369 (370)
T ss_pred CCCHHHhhhccCCCCCccE-eCcHHHhhcchhhhhhccccCC-CcEEEECCCChhHHHHHHHHHHcCCCCceEEeccccC
Confidence 8999999999998 588 88854442 22 389999999999999999999999986 999999985
No 44
>PRK11784 tRNA 2-selenouridine synthase; Provisional
Probab=99.09 E-value=1.8e-10 Score=103.84 Aligned_cols=68 Identities=24% Similarity=0.375 Sum_probs=59.1
Q ss_pred ccChhhhhcCCCccccccCCCCC-----------------------------------------CC-CCCCeEEEEc-CC
Q 029506 3 VMNSLLSQYNLFVQAFASDPLAD-----------------------------------------LD-KEKTDILMYC-TG 39 (192)
Q Consensus 3 ~rn~~E~~~g~f~gai~~~pl~e-----------------------------------------l~-k~~k~IvlyC-~~ 39 (192)
||++.|+..||||||+ ++|+.. ++ ++ ++||+|| ++
T Consensus 21 VRsp~Ef~~ghIpgAi-niPl~~~~er~~vgt~Ykq~g~~~a~~lg~~lv~~~l~~~~~~~~~~~~~~~-~~ivvyC~rg 98 (345)
T PRK11784 21 VRSPIEFAEGHIPGAI-NLPLLNDEERAEVGTCYKQQGQFAAIALGHALVAGNIAAHREEAWADFPRAN-PRGLLYCWRG 98 (345)
T ss_pred CCCHHHHhcCCCCCee-eCCCCChhHHHhhchhhcccCHHHHHHhhhhhcchhHHHHHHHHHHhcccCC-CeEEEEECCC
Confidence 8999999999999999 888732 11 34 7999999 68
Q ss_pred ChhHHHHHHHHHHcCCCcEEEcCcchHhhhhhcC
Q 029506 40 GIRCDVYSTILRQRGFHNLYTLKGGVSHYLENEG 73 (192)
Q Consensus 40 G~Rs~~Aa~~L~~~Gf~~Vy~L~GGi~~w~~~~~ 73 (192)
|.||..++.+|+..|| +|+.|.||+.+|...+.
T Consensus 99 G~RS~~aa~~L~~~G~-~v~~L~GG~~awr~~~~ 131 (345)
T PRK11784 99 GLRSGSVQQWLKEAGI-DVPRLEGGYKAYRRFVI 131 (345)
T ss_pred ChHHHHHHHHHHHcCC-CcEEEcCCHHHHHHhhH
Confidence 9999999999999999 59999999999987554
No 45
>PRK11493 sseA 3-mercaptopyruvate sulfurtransferase; Provisional
Probab=98.95 E-value=7.9e-10 Score=96.05 Aligned_cols=72 Identities=18% Similarity=0.223 Sum_probs=60.5
Q ss_pred ccChhhhh-----------cCCCccccccCCCCC---------------------CCCCCCeEEEEcCCChhHHHHHHHH
Q 029506 3 VMNSLLSQ-----------YNLFVQAFASDPLAD---------------------LDKEKTDILMYCTGGIRCDVYSTIL 50 (192)
Q Consensus 3 ~rn~~E~~-----------~g~f~gai~~~pl~e---------------------l~k~~k~IvlyC~~G~Rs~~Aa~~L 50 (192)
+|.+.||. .||||||+ ++|... ++++ ++||+||.+|.|+..+..+|
T Consensus 174 ~R~~~e~~G~~~~~~~~~~~GhIpgA~-~i~~~~~~~~~~~~~~~~l~~~~~~~g~~~~-~~ii~yC~~G~~A~~~~~~l 251 (281)
T PRK11493 174 ARPAARFNAEVDEPRPGLRRGHIPGAL-NVPWTELVREGELKTTDELDAIFFGRGVSFD-RPIIASCGSGVTAAVVVLAL 251 (281)
T ss_pred CCCccceeeeccCCCCCcccccCCCcC-CCCHHHhcCCCCcCCHHHHHHHHHhcCCCCC-CCEEEECCcHHHHHHHHHHH
Confidence 67777774 69999999 776221 2455 69999999999999999999
Q ss_pred HHcCCCcEEEcCcchHhhhh-hcCCce
Q 029506 51 RQRGFHNLYTLKGGVSHYLE-NEGPVE 76 (192)
Q Consensus 51 ~~~Gf~~Vy~L~GGi~~w~~-~~~p~~ 76 (192)
+..||++|+.+.||+..|.. .++|+.
T Consensus 252 ~~~G~~~v~~y~Gs~~eW~~~~~~P~~ 278 (281)
T PRK11493 252 ATLDVPNVKLYDGAWSEWGARADLPVE 278 (281)
T ss_pred HHcCCCCceeeCCCHHHHccCCCCCcC
Confidence 99999999999999999987 577864
No 46
>PRK11493 sseA 3-mercaptopyruvate sulfurtransferase; Provisional
Probab=98.84 E-value=5.2e-09 Score=90.91 Aligned_cols=68 Identities=13% Similarity=0.195 Sum_probs=54.5
Q ss_pred hhhhhcCCCccccccCCCCC--------------------------CCCCCCeEEEEcCCChh-HHHHHHHHHHcCCCcE
Q 029506 6 SLLSQYNLFVQAFASDPLAD--------------------------LDKEKTDILMYCTGGIR-CDVYSTILRQRGFHNL 58 (192)
Q Consensus 6 ~~E~~~g~f~gai~~~pl~e--------------------------l~k~~k~IvlyC~~G~R-s~~Aa~~L~~~Gf~~V 58 (192)
+.|+..||||||+ ++++.. ++++ ++||+||.+|.+ +..+...|+..||++|
T Consensus 39 ~~~y~~GHIpGA~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gi~~d-~~VVvyc~~~~~~a~~~~~~l~~~G~~~v 116 (281)
T PRK11493 39 AAEYRAGHIPGAV-FFDIEALSDHTSPLPHMMPRPETFAVAMRELGVNQD-KHLVVYDEGNLFSAPRAWWMLRTFGVEKV 116 (281)
T ss_pred HHHHHhCcCCCCE-EcCHHHhcCCCCCCCCCCCCHHHHHHHHHHcCCCCC-CEEEEECCCCCchHHHHHHHHHHhcCCcE
Confidence 6889999999999 543210 2345 699999999876 5567788999999999
Q ss_pred EEcCcchHhhhhhcCCc
Q 029506 59 YTLKGGVSHYLENEGPV 75 (192)
Q Consensus 59 y~L~GGi~~w~~~~~p~ 75 (192)
+.|.||+.+|...+.|+
T Consensus 117 ~~l~GG~~~W~~~g~p~ 133 (281)
T PRK11493 117 SILAGGLAGWQRDDLLL 133 (281)
T ss_pred EEcCCCHHHHHHcCCCc
Confidence 99999999999876653
No 47
>PLN02723 3-mercaptopyruvate sulfurtransferase
Probab=98.83 E-value=5.3e-09 Score=92.88 Aligned_cols=71 Identities=13% Similarity=0.193 Sum_probs=59.2
Q ss_pred ccChhhh-----------hcCCCccccccCCCC----------------------CCCCCCCeEEEEcCCChhHHHHHHH
Q 029506 3 VMNSLLS-----------QYNLFVQAFASDPLA----------------------DLDKEKTDILMYCTGGIRCDVYSTI 49 (192)
Q Consensus 3 ~rn~~E~-----------~~g~f~gai~~~pl~----------------------el~k~~k~IvlyC~~G~Rs~~Aa~~ 49 (192)
+|++.|| ..||||||+ ++|+. .++++ ++||+||.+|.|+..+...
T Consensus 211 ~R~~~ef~G~~~~~~~~~~~GHIPgAv-nip~~~~~~~~~~~~~~~el~~~~~~~gi~~~-~~iv~yC~sG~~A~~~~~~ 288 (320)
T PLN02723 211 ARSKARFDGAAPEPRKGIRSGHIPGSK-CVPFPQMLDSSQTLLPAEELKKRFEQEGISLD-SPIVASCGTGVTACILALG 288 (320)
T ss_pred CCCcccccCCCCCCCCCCcCCcCCCCc-ccCHHHhcCCCCCCCCHHHHHHHHHhcCCCCC-CCEEEECCcHHHHHHHHHH
Confidence 6777776 569999999 77741 24456 7999999999999999999
Q ss_pred HHHcCCCcEEEcCcchHhhhhh-cCCc
Q 029506 50 LRQRGFHNLYTLKGGVSHYLEN-EGPV 75 (192)
Q Consensus 50 L~~~Gf~~Vy~L~GGi~~w~~~-~~p~ 75 (192)
|+.+||++|+.+.||+..|... .+|+
T Consensus 289 L~~~G~~~v~~YdGs~~eW~~~~~~Pv 315 (320)
T PLN02723 289 LHRLGKTDVPVYDGSWTEWGALPDTPV 315 (320)
T ss_pred HHHcCCCCeeEeCCCHHHHhcCCCCCc
Confidence 9999999999999999999865 3454
No 48
>PLN02723 3-mercaptopyruvate sulfurtransferase
Probab=98.82 E-value=7.1e-09 Score=92.06 Aligned_cols=71 Identities=20% Similarity=0.240 Sum_probs=56.0
Q ss_pred cCh-hhhhcCCCccccccCCCCC--------------------------CCCCCCeEEEEcCCChhH-HHHHHHHHHcCC
Q 029506 4 MNS-LLSQYNLFVQAFASDPLAD--------------------------LDKEKTDILMYCTGGIRC-DVYSTILRQRGF 55 (192)
Q Consensus 4 rn~-~E~~~g~f~gai~~~pl~e--------------------------l~k~~k~IvlyC~~G~Rs-~~Aa~~L~~~Gf 55 (192)
|+. .||..||||||+ ++++.+ +.++ ++||+||.+|.++ ..+.-.|+..||
T Consensus 52 r~~~~~y~~gHIPgAi-~i~~~~~~~~~~~~~~~lp~~~~~~~~l~~~Gi~~~-~~VVvY~~~g~~~a~r~~~~L~~~G~ 129 (320)
T PLN02723 52 RNPIQEYQVAHIPGAL-FFDLDGISDRTTDLPHMLPSEEAFAAAVSALGIENK-DGVVVYDGKGIFSAARVWWMFRVFGH 129 (320)
T ss_pred CchHHHHHhccCCCCe-ecCHHHhcCCCCCcCCCCCCHHHHHHHHHHcCCCCC-CEEEEEcCCCcchHHHHHHHHHHcCC
Confidence 443 789999999999 654210 2244 6999999888654 567788999999
Q ss_pred CcEEEcCcchHhhhhhcCCce
Q 029506 56 HNLYTLKGGVSHYLENEGPVE 76 (192)
Q Consensus 56 ~~Vy~L~GGi~~w~~~~~p~~ 76 (192)
++|+.|.||+.+|..++.|+.
T Consensus 130 ~~V~~LdGG~~~W~~~G~pv~ 150 (320)
T PLN02723 130 EKVWVLDGGLPKWRASGYDVE 150 (320)
T ss_pred CceEEcCCCHHHHHHcCCCcc
Confidence 999999999999999887753
No 49
>PRK09629 bifunctional thiosulfate sulfurtransferase/phosphatidylserine decarboxylase; Provisional
Probab=98.77 E-value=1.4e-08 Score=97.75 Aligned_cols=71 Identities=15% Similarity=0.113 Sum_probs=59.2
Q ss_pred ccChhhhhcCCCccccccCCCC------------------------C--CCCCCCeEEEEcCCC-hhHHHHHHHHHHcCC
Q 029506 3 VMNSLLSQYNLFVQAFASDPLA------------------------D--LDKEKTDILMYCTGG-IRCDVYSTILRQRGF 55 (192)
Q Consensus 3 ~rn~~E~~~g~f~gai~~~pl~------------------------e--l~k~~k~IvlyC~~G-~Rs~~Aa~~L~~~Gf 55 (192)
||++.||..||||||+ ++++. + ++++ ++||+||++| .++..++-.|+..|+
T Consensus 30 vR~~~eY~~GHIPGAv-~i~~~~~~~~~~~~~~~lp~~~~l~~~l~~lGI~~d-~~VVvYd~~g~~~A~R~~w~L~~~G~ 107 (610)
T PRK09629 30 LTSSARYEAGHIRGAR-FVDPKRTQLGKPPAPGLLPDTADLEQLFGELGHNPD-AVYVVYDDEGGGWAGRFIWLLDVIGH 107 (610)
T ss_pred CCChHHHHhCCCCCcE-EcChhHhhccCCCCCCCCCCHHHHHHHHHHcCCCCC-CEEEEECCCCCchHHHHHHHHHHcCC
Confidence 7999999999999999 55321 1 2345 7999999977 578899999999999
Q ss_pred CcEEEcCcchHhhhhhcCCc
Q 029506 56 HNLYTLKGGVSHYLENEGPV 75 (192)
Q Consensus 56 ~~Vy~L~GGi~~w~~~~~p~ 75 (192)
++|+.|.||+.+|..++.|+
T Consensus 108 ~~V~iLdGG~~aW~~ag~p~ 127 (610)
T PRK09629 108 SGYHYLDGGVLAWEAQALPL 127 (610)
T ss_pred CCEEEcCCCHHHHHHcCCcc
Confidence 99999999999999887663
No 50
>cd01446 DSP_MapKP N-terminal regulatory rhodanese domain of dual specificity phosphatases (DSP), such as Mapk Phosphatase. This domain is believed to determine substrate specificity by binding the substrate, such as ERK2, and activating the C-terminal catalytic domain by inducing a conformational change. This domain has homology to the Rhodanese Homology Domain.
Probab=98.73 E-value=2.8e-08 Score=76.67 Aligned_cols=69 Identities=13% Similarity=0.096 Sum_probs=55.9
Q ss_pred cccChhhhhcCCCccccccCCCCCC---------------------------CCCCCeEEEEcCCChh---------HHH
Q 029506 2 MVMNSLLSQYNLFVQAFASDPLADL---------------------------DKEKTDILMYCTGGIR---------CDV 45 (192)
Q Consensus 2 ~~rn~~E~~~g~f~gai~~~pl~el---------------------------~k~~k~IvlyC~~G~R---------s~~ 45 (192)
-||...|++.||||+|+ ++|+..+ .++ ++||+||.+|.+ ...
T Consensus 22 DvR~~~~~~~~hI~~ai-~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~VVvYd~~~~~~~~~~~~~~~~~ 99 (132)
T cd01446 22 DCRPFLEYSSSHIRGAV-NVCCPTILRRRLQGGKILLQQLLSCPEDRDRLRRGES-LAVVVYDESSSDRERLREDSTAES 99 (132)
T ss_pred ECCCHHHHhhCcccCcE-ecChHHHHHHhhcccchhhhhhcCCHHHHHHHhcCCC-CeEEEEeCCCcchhhccccchHHH
Confidence 37999999999999999 7764420 013 699999998876 778
Q ss_pred HHHHHHH--cCCCcEEEcCcchHhhhhhc
Q 029506 46 YSTILRQ--RGFHNLYTLKGGVSHYLENE 72 (192)
Q Consensus 46 Aa~~L~~--~Gf~~Vy~L~GGi~~w~~~~ 72 (192)
+++.|.+ .|+.+|+.|+||+.+|....
T Consensus 100 ~~~~l~~~~~~~~~v~~L~GG~~~w~~~~ 128 (132)
T cd01446 100 VLGKLLRKLQEGCSVYLLKGGFEQFSSEF 128 (132)
T ss_pred HHHHHHHhcCCCceEEEEcchHHHHHhhC
Confidence 8888888 47789999999999997754
No 51
>PRK09629 bifunctional thiosulfate sulfurtransferase/phosphatidylserine decarboxylase; Provisional
Probab=98.66 E-value=2.8e-08 Score=95.57 Aligned_cols=82 Identities=10% Similarity=0.080 Sum_probs=66.3
Q ss_pred ccChhhhh--------cCCCccccccCCCC----------------------CCCCCCCeEEEEcCCChhHHHHHHHHHH
Q 029506 3 VMNSLLSQ--------YNLFVQAFASDPLA----------------------DLDKEKTDILMYCTGGIRCDVYSTILRQ 52 (192)
Q Consensus 3 ~rn~~E~~--------~g~f~gai~~~pl~----------------------el~k~~k~IvlyC~~G~Rs~~Aa~~L~~ 52 (192)
+|.+.|+. .||||||+ ++|.. .++++ ++||+||.+|.|+..+.-.|+.
T Consensus 168 aR~~~ef~G~~~~~~r~GHIPGAv-nip~~~~~~~~~~lk~~~el~~~~~~~Gi~~~-~~VVvYC~sG~rAa~~~~~L~~ 245 (610)
T PRK09629 168 ARAPTEYSGEKVVAAKGGHIPGAV-NFEWTAGMDKARNLRIRQDMPEILRDLGITPD-KEVITHCQTHHRSGFTYLVAKA 245 (610)
T ss_pred CCCccccCCcccccccCCCCCCCe-ecCHHHhcCCCCCCCCHHHHHHHHHHcCCCCC-CCEEEECCCChHHHHHHHHHHH
Confidence 68888884 79999999 77631 13455 7999999999999999999999
Q ss_pred cCCCcEEEcCcchHhhhhh-cCCceeeccceEEee
Q 029506 53 RGFHNLYTLKGGVSHYLEN-EGPVEWVGNLFVFDS 86 (192)
Q Consensus 53 ~Gf~~Vy~L~GGi~~w~~~-~~p~~~~g~~fVFD~ 86 (192)
.||++|+.+.||+.+|... ..|+.-.|.+-|=-+
T Consensus 246 lG~~~V~~YdGsw~eW~~~~~lPv~~~~~~~~~~~ 280 (610)
T PRK09629 246 LGYPRVKAYAGSWGEWGNHPDTPVEVPTVAAAPIE 280 (610)
T ss_pred cCCCCcEEeCCCHHHHhCCCCCccccCCCCccccc
Confidence 9999999999999999875 568766666555433
No 52
>PRK01269 tRNA s(4)U8 sulfurtransferase; Provisional
Probab=98.66 E-value=3.4e-08 Score=92.34 Aligned_cols=58 Identities=24% Similarity=0.434 Sum_probs=51.7
Q ss_pred ccChhhhhcCCCcc----ccccCCC-------CCCCCCCCeEEEEcCCChhHHHHHHHHHHcCCCcEEEcC
Q 029506 3 VMNSLLSQYNLFVQ----AFASDPL-------ADLDKEKTDILMYCTGGIRCDVYSTILRQRGFHNLYTLK 62 (192)
Q Consensus 3 ~rn~~E~~~g~f~g----ai~~~pl-------~el~k~~k~IvlyC~~G~Rs~~Aa~~L~~~Gf~~Vy~L~ 62 (192)
||++.|++.+|+|| ++ ++|+ .+++++ ++|++||.+|.||..|+..|+++||++|+...
T Consensus 413 VR~~~E~~~~hI~g~~~~a~-niP~~~l~~~~~~l~~~-~~iivyC~~G~rS~~aa~~L~~~G~~nv~~y~ 481 (482)
T PRK01269 413 IRSPDEQEDKPLKLEGVEVK-SLPFYKLSTQFGDLDQS-KTYLLYCDRGVMSRLQALYLREQGFSNVKVYR 481 (482)
T ss_pred CCCHHHHhcCCCCCCCceEE-ECCHHHHHHHHhhcCCC-CeEEEECCCCHHHHHHHHHHHHcCCccEEecC
Confidence 89999999999999 88 7874 345666 79999999999999999999999999998654
No 53
>cd01445 TST_Repeats Thiosulfate sulfurtransferases (TST) contain 2 copies of the Rhodanese Homology Domain. Only the second repeat contains the catalytically active Cys residue. The role of the 1st repeat is uncertain, but believed to be involved in protein interaction. This CD aligns the 1st and 2nd repeats.
Probab=98.55 E-value=1.8e-07 Score=73.81 Aligned_cols=39 Identities=15% Similarity=0.242 Sum_probs=35.8
Q ss_pred CeEEEEcCC---ChhHHHHHHHHHHcCCCcEEEcCcchHhhh
Q 029506 31 TDILMYCTG---GIRCDVYSTILRQRGFHNLYTLKGGVSHYL 69 (192)
Q Consensus 31 k~IvlyC~~---G~Rs~~Aa~~L~~~Gf~~Vy~L~GGi~~w~ 69 (192)
++||+||.+ |.++..+.-.|+..|+++|+.|.||+.+|.
T Consensus 96 ~~vVvY~~~~~~g~~A~r~~~~l~~~G~~~v~ildGG~~~W~ 137 (138)
T cd01445 96 KHLIATDGDDLGGFTACHIALAARLCGHPDVAILDGGFFEWF 137 (138)
T ss_pred CeEEEECCCCCcchHHHHHHHHHHHcCCCCeEEeCCCHHHhh
Confidence 699999986 788888888999999999999999999995
No 54
>KOG2017 consensus Molybdopterin synthase sulfurylase [Coenzyme transport and metabolism]
Probab=98.19 E-value=8e-07 Score=80.78 Aligned_cols=73 Identities=23% Similarity=0.296 Sum_probs=62.4
Q ss_pred cccChhhhhcCCCccccccCCCCCCCC------------CCCeEEEEcCCChhHHHHHHHHHHcCC-CcEEEcCcchHhh
Q 029506 2 MVMNSLLSQYNLFVQAFASDPLADLDK------------EKTDILMYCTGGIRCDVYSTILRQRGF-HNLYTLKGGVSHY 68 (192)
Q Consensus 2 ~~rn~~E~~~g~f~gai~~~pl~el~k------------~~k~IvlyC~~G~Rs~~Aa~~L~~~Gf-~~Vy~L~GGi~~w 68 (192)
-||.+.|++|.++|+++ ++|+.+++. ..++|++.|+.|+-|.+|+.+|++..+ .+|..+.||+.+|
T Consensus 338 DvRp~~~~eI~~lP~av-NIPL~~l~~~~~~~~~~~~~~~~~~I~ViCrrGNdSQ~Av~~Lre~~~~~~vrDvigGl~~w 416 (427)
T KOG2017|consen 338 DVRPSHEYEICRLPEAV-NIPLKELRSRSGKKLQGDLNTESKDIFVICRRGNDSQRAVRILREKFPDSSVRDVIGGLKAW 416 (427)
T ss_pred eccCcceEEEEeccccc-ccchhhhhhhhhhhhcccccccCCCEEEEeCCCCchHHHHHHHHhhCCchhhhhhhhHHHHH
Confidence 38999999999999999 999876641 136899999999999999999998754 4688899999999
Q ss_pred hhhcCCc
Q 029506 69 LENEGPV 75 (192)
Q Consensus 69 ~~~~~p~ 75 (192)
..+..|.
T Consensus 417 ~~~vd~~ 423 (427)
T KOG2017|consen 417 AAKVDPN 423 (427)
T ss_pred HHhcCcC
Confidence 9887664
No 55
>COG2897 SseA Rhodanese-related sulfurtransferase [Inorganic ion transport and metabolism]
Probab=98.12 E-value=5.5e-06 Score=73.36 Aligned_cols=71 Identities=23% Similarity=0.316 Sum_probs=60.1
Q ss_pred ccChhhhhc----------CCCccccccCCC----------------------CCCCCCCCeEEEEcCCChhHHHHHHHH
Q 029506 3 VMNSLLSQY----------NLFVQAFASDPL----------------------ADLDKEKTDILMYCTGGIRCDVYSTIL 50 (192)
Q Consensus 3 ~rn~~E~~~----------g~f~gai~~~pl----------------------~el~k~~k~IvlyC~~G~Rs~~Aa~~L 50 (192)
+|++.||.- ||||||+ ++|. .-++++ ++||+||.+|.|+...--.|
T Consensus 177 aR~~~rf~G~~~ep~~~~~GHIPGAi-Nipw~~~~~~~~~~~~~~~~~~l~~~~gi~~~-~~vI~yCgsG~~As~~~~al 254 (285)
T COG2897 177 ARSPERFRGKEPEPRDGKAGHIPGAI-NIPWTDLVDDGGLFKSPEEIARLYADAGIDPD-KEVIVYCGSGVRASVTWLAL 254 (285)
T ss_pred cCCHHHhCCCCCCCCCCCCCCCCCCc-CcCHHHHhcCCCccCcHHHHHHHHHhcCCCCC-CCEEEEcCCchHHHHHHHHH
Confidence 688999988 9999999 8872 114556 79999999999999999999
Q ss_pred HHcCCCcEEEcCcchHhhhhhcC-Cc
Q 029506 51 RQRGFHNLYTLKGGVSHYLENEG-PV 75 (192)
Q Consensus 51 ~~~Gf~~Vy~L~GGi~~w~~~~~-p~ 75 (192)
+..|+.++....|+...|..... |+
T Consensus 255 ~~lg~~~~~lYdGSWsEWg~~~~~PV 280 (285)
T COG2897 255 AELGGPNNRLYDGSWSEWGSDPDRPV 280 (285)
T ss_pred HHhCCCCcccccChHHHhhcCCCCcc
Confidence 99999888888999999987654 54
No 56
>COG2897 SseA Rhodanese-related sulfurtransferase [Inorganic ion transport and metabolism]
Probab=97.39 E-value=0.00045 Score=61.29 Aligned_cols=69 Identities=19% Similarity=0.187 Sum_probs=53.1
Q ss_pred hhhhhcCCCccccccCC-------C------------------CCCCCCCCeEEEEcCCCh-hHHHHHHHHHHcCCCcEE
Q 029506 6 SLLSQYNLFVQAFASDP-------L------------------ADLDKEKTDILMYCTGGI-RCDVYSTILRQRGFHNLY 59 (192)
Q Consensus 6 ~~E~~~g~f~gai~~~p-------l------------------~el~k~~k~IvlyC~~G~-Rs~~Aa~~L~~~Gf~~Vy 59 (192)
..+|..||||||+-.+. . .-|..+ .+||+|-.+|. -+..|.=.|+-.|.++|+
T Consensus 42 ~~~Y~~~HIPGAv~~d~~~~~~~~~~~~~~lp~~e~fa~~~~~~GI~~d-~tVVvYdd~~~~~A~ra~W~l~~~Gh~~V~ 120 (285)
T COG2897 42 AEEYLEGHIPGAVFFDWEADLSDPVPLPHMLPSPEQFAKLLGELGIRND-DTVVVYDDGGGFFAARAWWLLRYLGHENVR 120 (285)
T ss_pred HHHHHhccCCCCEecCHHHhhcCCCCCCCCCCCHHHHHHHHHHcCCCCC-CEEEEECCCCCeehHHHHHHHHHcCCCceE
Confidence 58999999999993321 0 012334 68999996655 466777788889999999
Q ss_pred EcCcchHhhhhhcCCc
Q 029506 60 TLKGGVSHYLENEGPV 75 (192)
Q Consensus 60 ~L~GGi~~w~~~~~p~ 75 (192)
.|.||+.+|.++++|+
T Consensus 121 iLdGG~~~W~~~g~p~ 136 (285)
T COG2897 121 ILDGGLPAWKAAGLPL 136 (285)
T ss_pred EecCCHHHHHHcCCCc
Confidence 9999999999998875
No 57
>KOG3772 consensus M-phase inducer phosphatase [Cell cycle control, cell division, chromosome partitioning]
Probab=96.95 E-value=0.00087 Score=60.44 Aligned_cols=70 Identities=16% Similarity=0.213 Sum_probs=53.6
Q ss_pred ccChhhhhcCCCccccccCCCCC-----------CCC--CCCeEEEEcC-CChhHHHHHHHHHH------------cCCC
Q 029506 3 VMNSLLSQYNLFVQAFASDPLAD-----------LDK--EKTDILMYCT-GGIRCDVYSTILRQ------------RGFH 56 (192)
Q Consensus 3 ~rn~~E~~~g~f~gai~~~pl~e-----------l~k--~~k~IvlyC~-~G~Rs~~Aa~~L~~------------~Gf~ 56 (192)
+|-++||.-|||+||+ +++..+ ..+ ...-+|+||. +-.|.-++|..|++ .-|-
T Consensus 183 cR~pyEY~GGHIkgav-nl~~~~~~~~~f~~~~~~~~~~~~~i~IFhCefSq~RGP~mA~~lr~iDR~r~~~~yp~l~yp 261 (325)
T KOG3772|consen 183 CRYPYEYEGGHIKGAV-NLYSKELLQDFFLLKDGVPSGSKRVILIFHCEFSQERGPKMARHLRNIDRDRNSNDYPKLSYP 261 (325)
T ss_pred eCCcccccCcccccce-ecccHhhhhhhhccccccccccCceeEEEEeeeccccCHHHHHHHHHhhhhhhcccCcccccc
Confidence 5889999999999999 775211 111 1146899996 56899999999994 2467
Q ss_pred cEEEcCcchHhhhhhcC
Q 029506 57 NLYTLKGGVSHYLENEG 73 (192)
Q Consensus 57 ~Vy~L~GGi~~w~~~~~ 73 (192)
.+|.|+||+.+|.....
T Consensus 262 E~yiL~gGYk~ff~~~~ 278 (325)
T KOG3772|consen 262 ELYILDGGYKEFFSNYP 278 (325)
T ss_pred hheeecccHHHHHHhcc
Confidence 89999999999987654
No 58
>KOG1529 consensus Mercaptopyruvate sulfurtransferase/thiosulfate sulfurtransferase [Defense mechanisms]
Probab=93.57 E-value=0.16 Score=45.29 Aligned_cols=68 Identities=21% Similarity=0.231 Sum_probs=49.6
Q ss_pred hhhhhcCCCccccccCCCCC--------------------------CCCCCCeEEEEcC--CChhHH-HHHHHHHHcCCC
Q 029506 6 SLLSQYNLFVQAFASDPLAD--------------------------LDKEKTDILMYCT--GGIRCD-VYSTILRQRGFH 56 (192)
Q Consensus 6 ~~E~~~g~f~gai~~~pl~e--------------------------l~k~~k~IvlyC~--~G~Rs~-~Aa~~L~~~Gf~ 56 (192)
..|++.-|+|||. .+-++. ++.+ ..+|+|-. +|+-+. ++.=.|+-.|++
T Consensus 38 ~~e~~~~hipga~-~fdld~~~~~s~~~~~~lp~~e~Fa~y~~~lGi~n~-d~vViYd~~~~Gm~~Asrv~W~fr~fGh~ 115 (286)
T KOG1529|consen 38 EFEFLERHIPGAS-HFDLDIISYPSSPYRHMLPTAEHFAEYASRLGVDNG-DHVVIYDRGDGGMFSASRVWWTFRVFGHT 115 (286)
T ss_pred hhhhhhccCCCce-eeeccccccCCCcccccCccHHHHHHHHHhcCCCCC-CeEEEEcCCCcceeehhhHHHHHHHhCcc
Confidence 4677778999988 542211 1222 37999998 776544 455567888999
Q ss_pred cEEEcCcchHhhhhhcCCc
Q 029506 57 NLYTLKGGVSHYLENEGPV 75 (192)
Q Consensus 57 ~Vy~L~GGi~~w~~~~~p~ 75 (192)
+|+-|.||+.+|++.+.|+
T Consensus 116 ~VslL~GG~~~Wk~~g~~~ 134 (286)
T KOG1529|consen 116 KVSLLNGGFRAWKAAGGPV 134 (286)
T ss_pred EEEEecCcHHHHHHcCCcc
Confidence 9999999999999887764
No 59
>KOG1529 consensus Mercaptopyruvate sulfurtransferase/thiosulfate sulfurtransferase [Defense mechanisms]
Probab=93.04 E-value=0.2 Score=44.70 Aligned_cols=63 Identities=16% Similarity=0.317 Sum_probs=50.0
Q ss_pred hhcCCCccccccCCCCCC-------------C--------CCCCeEEEEcCCChhHHHHHHHHHHcCCCcEEEcCcchHh
Q 029506 9 SQYNLFVQAFASDPLADL-------------D--------KEKTDILMYCTGGIRCDVYSTILRQRGFHNLYTLKGGVSH 67 (192)
Q Consensus 9 ~~~g~f~gai~~~pl~el-------------~--------k~~k~IvlyC~~G~Rs~~Aa~~L~~~Gf~~Vy~L~GGi~~ 67 (192)
+.-|||||++ ++|+.++ + +..+|||+-|..|+.+-..+-.|...| .+|....|+...
T Consensus 195 ~~ggHIpGa~-n~P~~~~~~~~g~~k~~edl~~~f~~~~l~~~~p~~~sC~~Gisa~~i~~al~r~g-~~~~lYdGS~~E 272 (286)
T KOG1529|consen 195 ATGGHIPGAI-NFPFDEVLDPDGFIKPAEDLKHLFAQKGLKLSKPVIVSCGTGISASIIALALERSG-PDAKLYDGSWTE 272 (286)
T ss_pred CcCccCCCcc-cCChHHhcccccccCCHHHHHHHHHhcCcccCCCEEEeeccchhHHHHHHHHHhcC-CCcceecccHHH
Confidence 4679999999 8885331 0 113799999999999999999999999 678888899999
Q ss_pred hhhhcCC
Q 029506 68 YLENEGP 74 (192)
Q Consensus 68 w~~~~~p 74 (192)
|.. ..|
T Consensus 273 w~~-~~P 278 (286)
T KOG1529|consen 273 WAL-RAP 278 (286)
T ss_pred Hhh-cCc
Confidence 986 444
No 60
>COG5105 MIH1 Mitotic inducer, protein phosphatase [Cell division and chromosome partitioning]
Probab=89.00 E-value=0.51 Score=43.26 Aligned_cols=67 Identities=16% Similarity=0.277 Sum_probs=48.9
Q ss_pred cChhhhhcCCCccccccCCC-CC-----CCC---CCCeEEEEcC-CChhHHHHHHHHHHcC------------CCcEEEc
Q 029506 4 MNSLLSQYNLFVQAFASDPL-AD-----LDK---EKTDILMYCT-GGIRCDVYSTILRQRG------------FHNLYTL 61 (192)
Q Consensus 4 rn~~E~~~g~f~gai~~~pl-~e-----l~k---~~k~IvlyC~-~G~Rs~~Aa~~L~~~G------------f~~Vy~L 61 (192)
|=++||.-|||-.|+ ++-- .+ +.| -..-+|++|. +..|+-.+|.-|+... |-+||.|
T Consensus 270 RFeYEY~GGHIinaV-Ni~s~~~l~~~F~hkplThp~aLifHCEfSshRaP~LA~HlRN~DR~~N~dhYP~L~yPevyIl 348 (427)
T COG5105 270 RFEYEYRGGHIINAV-NISSTKKLGLLFRHKPLTHPRALIFHCEFSSHRAPRLAQHLRNMDRMKNPDHYPLLTYPEVYIL 348 (427)
T ss_pred cceeeecCceeeeee-ecchHHHHHHHHHhccccCceeEEEEeecccccchhHHHHHhhhhhhcCcccCcccccceEEEe
Confidence 667899999999999 6531 11 111 1146899995 6799999999998742 5689999
Q ss_pred CcchHhhhhh
Q 029506 62 KGGVSHYLEN 71 (192)
Q Consensus 62 ~GGi~~w~~~ 71 (192)
+||+.++-..
T Consensus 349 ~GGYk~fy~n 358 (427)
T COG5105 349 EGGYKKFYSN 358 (427)
T ss_pred cCcHHHHhhc
Confidence 9999876543
No 61
>TIGR01244 conserved hypothetical protein TIGR01244. No member of this family is characterized. The member from Xylella fastidiosa is a longer protein with an N-terminal region described by this model, followed by a metallo-beta-lactamase family domain and an additional C-terminal region. Members scoring above the trusted cutoff are limited to the proteobacteria.
Probab=87.64 E-value=0.63 Score=36.36 Aligned_cols=21 Identities=24% Similarity=0.526 Sum_probs=17.7
Q ss_pred CeEEEEcCCChhHHHHHHHHH
Q 029506 31 TDILMYCTGGIRCDVYSTILR 51 (192)
Q Consensus 31 k~IvlyC~~G~Rs~~Aa~~L~ 51 (192)
+||++||++|.|+..+..++.
T Consensus 87 ~pvL~HC~sG~Rt~~l~al~~ 107 (135)
T TIGR01244 87 GPVLAYCRSGTRSSLLWGFRQ 107 (135)
T ss_pred CCEEEEcCCChHHHHHHHHHH
Confidence 799999999999988766543
No 62
>PF04273 DUF442: Putative phosphatase (DUF442); InterPro: IPR005939 Although this domain is uncharacterised it seems likely that it performs a phosphatase function.; GO: 0016787 hydrolase activity; PDB: 2F46_A 3GXH_B 3GXG_B.
Probab=83.37 E-value=1.4 Score=33.75 Aligned_cols=19 Identities=21% Similarity=0.478 Sum_probs=14.9
Q ss_pred CeEEEEcCCChhHHHHHHH
Q 029506 31 TDILMYCTGGIRCDVYSTI 49 (192)
Q Consensus 31 k~IvlyC~~G~Rs~~Aa~~ 49 (192)
+||++||++|.|+...-.+
T Consensus 87 ~Pvl~hC~sG~Ra~~l~~l 105 (110)
T PF04273_consen 87 KPVLAHCRSGTRASALWAL 105 (110)
T ss_dssp TSEEEE-SCSHHHHHHHHH
T ss_pred CCEEEECCCChhHHHHHHH
Confidence 6999999999999765544
No 63
>COG2603 Predicted ATPase [General function prediction only]
Probab=81.34 E-value=0.7 Score=41.75 Aligned_cols=68 Identities=22% Similarity=0.349 Sum_probs=50.2
Q ss_pred CcccChhhhhcCCCccccccCCC-CC-----------------------------CC-------C---CCCeEEEEc-CC
Q 029506 1 MMVMNSLLSQYNLFVQAFASDPL-AD-----------------------------LD-------K---EKTDILMYC-TG 39 (192)
Q Consensus 1 ~~~rn~~E~~~g~f~gai~~~pl-~e-----------------------------l~-------k---~~k~IvlyC-~~ 39 (192)
|-||.+.|+.-|++|+++ +.|+ .+ +. + ..+|+-++| +|
T Consensus 19 id~rap~ef~~g~~~ia~-nl~~~ndder~~Igt~yKk~~~~~a~alg~~~vcG~i~~~~l~ask~f~e~~~~Gi~c~rg 97 (334)
T COG2603 19 IDVRAPIEFENGAMPIAI-NLPLMNDDERQEIGTCYKKQGQDAAKALGHALVCGEIRQQRLEASKAFQEENPVGILCARG 97 (334)
T ss_pred eeccchHHHhcccchhhh-ccccccchHHHHHHHHHhhcCcHHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCcceeeccc
Confidence 458999999999999999 6652 00 00 0 125777778 78
Q ss_pred ChhHHHHHHHH-HHcCCCcEEEcCcchHhhhh
Q 029506 40 GIRCDVYSTIL-RQRGFHNLYTLKGGVSHYLE 70 (192)
Q Consensus 40 G~Rs~~Aa~~L-~~~Gf~~Vy~L~GGi~~w~~ 70 (192)
|.||...+.+| ...|+. .--+.||..++..
T Consensus 98 g~rsk~v~~~l~~~~g~~-~~r~iGGeKalrt 128 (334)
T COG2603 98 GLRSKIVQKWLGYAAGID-YPRVIGGEKALRT 128 (334)
T ss_pred cchhHHHHHHHHHHHHhh-hhhhhchHHHHHH
Confidence 89999999999 677874 4457799888764
No 64
>PF15645 Tox-PLDMTX: Dermonecrotoxin of the Papain-like fold
Probab=80.42 E-value=1.5 Score=35.13 Aligned_cols=45 Identities=18% Similarity=0.423 Sum_probs=30.8
Q ss_pred HHHHHHHHHHcCCCcEEEcCcchHhhhhh--cCCc-------eeeccceEEeeecc
Q 029506 43 CDVYSTILRQRGFHNLYTLKGGVSHYLEN--EGPV-------EWVGNLFVFDSRLS 89 (192)
Q Consensus 43 s~~Aa~~L~~~Gf~~Vy~L~GGi~~w~~~--~~p~-------~~~g~~fVFD~R~~ 89 (192)
+..++.+|++.||+++.. +|+.-|... ..|. .+.|+-||||--..
T Consensus 11 ~~~v~~~lk~~g~~~~k~--~~l~~W~~~~~~~p~NH~vv~~k~~g~eyV~D~Ta~ 64 (135)
T PF15645_consen 11 MKEVADFLKDKGYEDIKY--RGLLIWENANDDSPTNHFVVVAKKNGKEYVFDPTAH 64 (135)
T ss_pred HHHHHHHHHhCCCCccee--eEEEEecCCCccCCcceEEEEEEECCEEEEEeCcHH
Confidence 446888999999987643 356678332 2231 47899999997543
No 65
>PF09992 DUF2233: Predicted periplasmic protein (DUF2233); InterPro: IPR018711 This entry contains proteins that catalyze the second step in the formation of the mannose 6-phosphate targeting signal on lysosomal enzyme oligosaccharides, this is achieved by removing GlcNAc residues from GlcNAc-alpha-P-mannose moieties, which are formed in the first step.; PDB: 3OHG_A.
Probab=76.11 E-value=3.1 Score=33.08 Aligned_cols=41 Identities=22% Similarity=0.396 Sum_probs=24.1
Q ss_pred CCCCCeEEEEcCC-----ChhHHHHHHHHHHcCCCcEEEcCcchHhh
Q 029506 27 DKEKTDILMYCTG-----GIRCDVYSTILRQRGFHNLYTLKGGVSHY 68 (192)
Q Consensus 27 ~k~~k~IvlyC~~-----G~Rs~~Aa~~L~~~Gf~~Vy~L~GGi~~w 68 (192)
+++ ..+++.... |..-..++.+|+++|..+..+|+||-..-
T Consensus 98 ~~~-g~l~l~~vdg~~~~g~tl~ela~~l~~lG~~~AinLDGGgSs~ 143 (170)
T PF09992_consen 98 TAD-GKLLLIVVDGRQSAGMTLDELAQLLKSLGCVDAINLDGGGSST 143 (170)
T ss_dssp -TT-SEEEEEEE----S--B-HHHHHHHHHHHT-SEEEE---GGG--
T ss_pred eCC-CcEEEEEEcCCcCCCCCHHHHHHHHHHcCcCeEEEecCCcceE
Confidence 345 355555533 67777899999999999999999997653
No 66
>PF01451 LMWPc: Low molecular weight phosphotyrosine protein phosphatase; InterPro: IPR023485 Protein tyrosine (pTyr) phosphorylation is a common post-translational modification which can create novel recognition motifs for protein interactions and cellular localisation, affect protein stability, and regulate enzyme activity. Consequently, maintaining an appropriate level of protein tyrosine phosphorylation is essential for many cellular functions. Tyrosine-specific protein phosphatases (PTPase; 3.1.3.48 from EC) catalyse the removal of a phosphate group attached to a tyrosine residue, using a cysteinyl-phosphate enzyme intermediate. These enzymes are key regulatory components in signal transduction pathways (such as the MAP kinase pathway) and cell cycle control, and are important in the control of cell growth, proliferation, differentiation and transformation [, ]. The PTP superfamily can be divided into four subfamilies []: (1) pTyr-specific phosphatases (2) dual specificity phosphatases (dTyr and dSer/dThr) (3) Cdc25 phosphatases (dTyr and/or dThr) (4) LMW (low molecular weight) phosphatases Based on their cellular localisation, PTPases are also classified as: Receptor-like, which are transmembrane receptors that contain PTPase domains [] Non-receptor (intracellular) PTPases [] All PTPases carry the highly conserved active site motif C(X)5R (PTP signature motif), employ a common catalytic mechanism, and share a similar core structure made of a central parallel beta-sheet with flanking alpha-helices containing a beta-loop-alpha-loop that encompasses the PTP signature motif []. Functional diversity between PTPases is endowed by regulatory domains and subunits. This entry represents the low molecular weight (LMW) protein-tyrosine phosphatases (or acid phosphatase), which act on tyrosine phosphorylated proteins, low-MW aryl phosphates and natural and synthetic acyl phosphates [, ]. The structure of a LMW PTPase has been solved by X-ray crystallography [] and is found to form a single structural domain. It belongs to the alpha/beta class, with 6 alpha-helices and 4 beta-strands forming a 3-layer alpha-beta-alpha sandwich architecture.; PDB: 3RH0_B 1JL3_B 2IPA_B 1Z2D_A 1Z2E_A 2CWD_D 2L18_A 2L17_A 2L19_A 1BVH_A ....
Probab=70.65 E-value=3.6 Score=31.45 Aligned_cols=36 Identities=28% Similarity=0.397 Sum_probs=30.6
Q ss_pred EEEEcCCC-hhHHHHHHHHHHc----CCCcEEEcCcchHhh
Q 029506 33 ILMYCTGG-IRCDVYSTILRQR----GFHNLYTLKGGVSHY 68 (192)
Q Consensus 33 IvlyC~~G-~Rs~~Aa~~L~~~----Gf~~Vy~L~GGi~~w 68 (192)
|++.|++. -||..|..+|+++ +-.++.....|+.+|
T Consensus 1 ILFvC~~N~cRS~mAEai~~~~~~~~~~~~~~v~SAG~~~~ 41 (138)
T PF01451_consen 1 ILFVCTGNICRSPMAEAILRHLLKQRLGDRFEVESAGTEAW 41 (138)
T ss_dssp EEEEESSSSSHHHHHHHHHHHHHHHTHTTTEEEEEEESSST
T ss_pred CEEEeCCCcchHHHHHHHHHHhccccccCCcEEEEEeeccc
Confidence 78999885 7999999999988 556788888899888
No 67
>PF04722 Ssu72: Ssu72-like protein; InterPro: IPR006811 The highly conserved and essential protein Ssu72 has intrinsic phosphatase activity and plays an essential role in the transcription cycle. Ssu72 was originally identified in a yeast genetic screen as enhancer of a defect caused by a mutation in the transcription initiation factor TFIIB []. It binds to TFIIB and is also involved in mRNA elongation. Ssu72 is further involved in both poly(A) dependent and independent termination. It is a subunit of the yeast cleavage and polyadenylation factor (CPF), which is part of the machinery for mRNA 3'-end formation. Ssu72 is also essential for transcription termination of snRNAs [].; GO: 0004721 phosphoprotein phosphatase activity, 0006397 mRNA processing, 0005634 nucleus; PDB: 3O2S_B 3O2Q_E 3FMV_H 3OMW_D 3P9Y_B 3FDF_A 3OMX_A.
Probab=68.98 E-value=3 Score=35.40 Aligned_cols=52 Identities=21% Similarity=0.382 Sum_probs=36.0
Q ss_pred CeEEEEcCCC-hhHHHHHHHHHHcCCCcEEEcCcchHhhhhhcCCceeeccceEEe
Q 029506 31 TDILMYCTGG-IRCDVYSTILRQRGFHNLYTLKGGVSHYLENEGPVEWVGNLFVFD 85 (192)
Q Consensus 31 k~IvlyC~~G-~Rs~~Aa~~L~~~Gf~~Vy~L~GGi~~w~~~~~p~~~~g~~fVFD 85 (192)
..+.+.|.+- +||..|-.+|+++|| +|... |-....+-.+|..-++..|-|.
T Consensus 2 l~~avVCasN~NRSMEAH~~L~~~G~-~V~Sf--GTGs~VkLPGps~d~PnvY~Fg 54 (195)
T PF04722_consen 2 LRFAVVCASNQNRSMEAHNVLKKAGF-NVRSF--GTGSHVKLPGPSIDKPNVYDFG 54 (195)
T ss_dssp SEEEEEESSSSSHHHHHHHHHHHTT--EEEEE--E-SSSEEEEESSTTCEEEE-TT
T ss_pred ceEEEEccCCCCcCHHHHHHHHHCCC-ceEee--cCCCcccCCCCCCCCCcccCCC
Confidence 3688999775 899999999999999 68776 3334444455655666677766
No 68
>cd00127 DSPc Dual specificity phosphatases (DSP); Ser/Thr and Tyr protein phosphatases. Structurally similar to tyrosine-specific phosphatases but with a shallower active site cleft and a distinctive active site signature motif, HCxxGxxR. Characterized as VHR- or Cdc25-like.
Probab=67.34 E-value=6.4 Score=29.48 Aligned_cols=22 Identities=23% Similarity=0.496 Sum_probs=16.4
Q ss_pred CeEEEEcCCCh-hHHHH-HHHHHH
Q 029506 31 TDILMYCTGGI-RCDVY-STILRQ 52 (192)
Q Consensus 31 k~IvlyC~~G~-Rs~~A-a~~L~~ 52 (192)
++|+++|..|. ||..+ +.+|..
T Consensus 82 ~~vlVHC~~G~~Rs~~~~~~~l~~ 105 (139)
T cd00127 82 GKVLVHCLAGVSRSATLVIAYLMK 105 (139)
T ss_pred CcEEEECCCCCchhHHHHHHHHHH
Confidence 69999999996 88854 445543
No 69
>smart00195 DSPc Dual specificity phosphatase, catalytic domain.
Probab=67.12 E-value=8.2 Score=29.21 Aligned_cols=25 Identities=24% Similarity=0.555 Sum_probs=18.3
Q ss_pred CeEEEEcCCCh-hHHH-HHHHH-HHcCC
Q 029506 31 TDILMYCTGGI-RCDV-YSTIL-RQRGF 55 (192)
Q Consensus 31 k~IvlyC~~G~-Rs~~-Aa~~L-~~~Gf 55 (192)
++|+++|..|. ||.. ++.+| ...|+
T Consensus 79 ~~VlVHC~~G~~RS~~v~~~yl~~~~~~ 106 (138)
T smart00195 79 GKVLVHCQAGVSRSATLIIAYLMKYRNL 106 (138)
T ss_pred CeEEEECCCCCchHHHHHHHHHHHHhCC
Confidence 79999999995 8875 45554 45565
No 70
>PF14446 Prok-RING_1: Prokaryotic RING finger family 1
Probab=66.35 E-value=3.1 Score=28.37 Aligned_cols=31 Identities=16% Similarity=0.491 Sum_probs=21.0
Q ss_pred ccccccCCCccccccccccCCCCCCccEEeChhhhhccCCCC
Q 029506 114 FATCYICSSQVRELRHRNCANLDCNLLFLCCADCVKNLRGCC 155 (192)
Q Consensus 114 ~~~C~~C~~~~~~~~~~nC~n~~C~~l~l~C~~C~~~~~~~c 155 (192)
-.+|..||++.... .-+++|+.|.+.++.-|
T Consensus 5 ~~~C~~Cg~~~~~~-----------dDiVvCp~CgapyHR~C 35 (54)
T PF14446_consen 5 GCKCPVCGKKFKDG-----------DDIVVCPECGAPYHRDC 35 (54)
T ss_pred CccChhhCCcccCC-----------CCEEECCCCCCcccHHH
Confidence 45788888887310 13788888888876544
No 71
>PF11494 Ta0938: Ta0938; InterPro: IPR021585 Ta0938 is a protein of unknown function however the structure has been determined. The protein has a novel fold and a putative Zn-binding motif. The structure has two different parts, one region contains a beta sheet flanked by two alpha helices and the other contains a bundle of loops which contain all cysteines in the protein. ; PDB: 2FQH_A.
Probab=65.05 E-value=2.2 Score=32.58 Aligned_cols=35 Identities=29% Similarity=0.777 Sum_probs=14.7
Q ss_pred ccccccCCCccccccccccCCCCCCccEEeChhhhhccC
Q 029506 114 FATCYICSSQVRELRHRNCANLDCNLLFLCCADCVKNLR 152 (192)
Q Consensus 114 ~~~C~~C~~~~~~~~~~nC~n~~C~~l~l~C~~C~~~~~ 152 (192)
-..|..||+||..+ |.- .+=.+||++|+.|+..+.
T Consensus 14 e~~CalCG~tWg~~-y~E---v~G~rLfFCCd~ca~EF~ 48 (105)
T PF11494_consen 14 EMGCALCGATWGDY-YEE---VDGERLFFCCDDCAKEFK 48 (105)
T ss_dssp GGS-SS---S---S-S-B----TT--BSSS--SSSS-TT
T ss_pred cccccccCCcHHHH-HHh---hcCCEEEEEcHHHHHHHH
Confidence 34799999999975 432 456788888888876654
No 72
>PF04473 DUF553: Transglutaminase-like domain; InterPro: IPR007562 This entry represents a transglutaminase-like domain found in a family of uncharacterised archaeal proteins that had previously been called DUF553 and UPF0252.
Probab=61.85 E-value=6.8 Score=31.82 Aligned_cols=46 Identities=20% Similarity=0.338 Sum_probs=31.2
Q ss_pred HHHHHHHHHHcCCCcEEEcCcchHhhhhh---cCCceeeccceEEeeeccC
Q 029506 43 CDVYSTILRQRGFHNLYTLKGGVSHYLEN---EGPVEWVGNLFVFDSRLSL 90 (192)
Q Consensus 43 s~~Aa~~L~~~Gf~~Vy~L~GGi~~w~~~---~~p~~~~g~~fVFD~R~~v 90 (192)
+...+++|..+||..+|.+ ++..-... ...+...|+.||+|.+..+
T Consensus 82 A~Lta~lLl~~g~~~~yi~--~~~~~~~~~Haa~aV~ing~~yvlDq~~p~ 130 (153)
T PF04473_consen 82 AILTAALLLNMGYSPVYIL--HIEFDNDPGHAAVAVKINGKYYVLDQHLPP 130 (153)
T ss_pred HHHHHHHHHHCCCCceEEE--EEecCCCCCeEEEEEEECCEEEEEeCCCCC
Confidence 3456788899999988876 34322211 1124588999999999874
No 73
>TIGR02689 ars_reduc_gluta arsenate reductase, glutathione/glutaredoxin type. Members of this protein family represent a novel form of arsenate reductase, using glutathione and glutaredoxin rather than thioredoxin for reducing equivalents as do some homologous arsenate reductases. An example of this type is Synechocystis sp. strain PCC 6803 slr0946, and of latter type (excluded from this model) is Staphylococcus aureus plasmid pI258 ArsC. Both are among the subset of arsenate reductases that belong the the low-molecular-weight protein-tyrosine phosphatase superfamily.
Probab=60.66 E-value=17 Score=27.68 Aligned_cols=36 Identities=14% Similarity=0.340 Sum_probs=26.4
Q ss_pred CeEEEEcCCC-hhHHHHHHHHHHcCCCcEEEcCcchH
Q 029506 31 TDILMYCTGG-IRCDVYSTILRQRGFHNLYTLKGGVS 66 (192)
Q Consensus 31 k~IvlyC~~G-~Rs~~Aa~~L~~~Gf~~Vy~L~GGi~ 66 (192)
++|++.|++. -||..|.++|++.+-.++.....|+.
T Consensus 1 ~~vlfvC~~N~cRS~mAEa~~~~~~~~~~~v~SAG~~ 37 (126)
T TIGR02689 1 KKVMFVCKRNSCRSQMAEGFAKTLGAGNIAVTSAGLE 37 (126)
T ss_pred CeEEEEcCCcHHHHHHHHHHHHHhcCCCEEEEcCcCC
Confidence 3699999775 68999999999875444544555654
No 74
>KOG2424 consensus Protein involved in transcription start site selection [Transcription]
Probab=58.27 E-value=10 Score=32.08 Aligned_cols=52 Identities=19% Similarity=0.348 Sum_probs=35.8
Q ss_pred CeEEEEcCCC-hhHHHHHHHHHHcCCCcEEEcCcchHhhhhhcCCceeeccceEEe
Q 029506 31 TDILMYCTGG-IRCDVYSTILRQRGFHNLYTLKGGVSHYLENEGPVEWVGNLFVFD 85 (192)
Q Consensus 31 k~IvlyC~~G-~Rs~~Aa~~L~~~Gf~~Vy~L~GGi~~w~~~~~p~~~~g~~fVFD 85 (192)
-.+.+.|.+- .||..|..+|+++|| +|....- ..-.+-.+|...++..|+|=
T Consensus 6 l~~avvC~sN~NRSMeaH~~L~~~G~-~v~S~GT--g~~vklPG~~~dkPNvY~Fg 58 (195)
T KOG2424|consen 6 LRVAVVCASNQNRSMEAHNILKKKGL-NVRSFGT--GSHVKLPGPSPDKPNVYDFG 58 (195)
T ss_pred ceeeeeehhcccchHHHHHHHHHcCC-cceeecC--CCceeCCCCCCCCCCccccC
Confidence 3688899764 899999999999999 5766522 12223334445677777774
No 75
>PRK15372 pathogenicity island 2 effector protein SseI; Provisional
Probab=56.88 E-value=9.1 Score=33.98 Aligned_cols=49 Identities=24% Similarity=0.408 Sum_probs=34.5
Q ss_pred cCCChhHH----HHHHHHHHcCCCcEEEcCcchHhhhhh--cCCc-------eeeccceEEeee
Q 029506 37 CTGGIRCD----VYSTILRQRGFHNLYTLKGGVSHYLEN--EGPV-------EWVGNLFVFDSR 87 (192)
Q Consensus 37 C~~G~Rs~----~Aa~~L~~~Gf~~Vy~L~GGi~~w~~~--~~p~-------~~~g~~fVFD~R 87 (192)
|..-.+|+ .++.+|+++||.++.. -||.-|... ..|. .-.++.||||--
T Consensus 142 ~~P~~~c~slm~pVa~fm~~~g~~diry--RgiyiW~~a~de~P~nHf~VvgkK~~k~YvfDlt 203 (292)
T PRK15372 142 MNPVGQCESLMTPVSNFMNEKGFDNIRY--RGIFIWDKPTEEIPTNHFAVVGNKEGKDYVFDVS 203 (292)
T ss_pred cCchhhhHHHHHHHHHHHHhcCCceeee--eeEEEecCCcccCccceeEEEeeccCcceEEEcc
Confidence 55545554 4788999999987754 278889764 3453 255899999964
No 76
>PRK10126 tyrosine phosphatase; Provisional
Probab=54.94 E-value=17 Score=28.48 Aligned_cols=37 Identities=22% Similarity=0.403 Sum_probs=27.6
Q ss_pred CeEEEEcCCC-hhHHHHHHHHHHcCCCcEEEcCcchHhh
Q 029506 31 TDILMYCTGG-IRCDVYSTILRQRGFHNLYTLKGGVSHY 68 (192)
Q Consensus 31 k~IvlyC~~G-~Rs~~Aa~~L~~~Gf~~Vy~L~GGi~~w 68 (192)
+.|+++|++. -||-.|..+|++.+ ..+..-..|+..|
T Consensus 3 ~~iLFVC~gN~cRSpmAEa~~~~~~-~~~~v~SAG~~~~ 40 (147)
T PRK10126 3 NNILVVCVGNICRSPTAERLLQRYH-PELKVESAGLGAL 40 (147)
T ss_pred CeEEEEcCCcHhHHHHHHHHHHHhc-CCeEEEeeeccCC
Confidence 4799999876 58999999999875 2344455677665
No 77
>smart00226 LMWPc Low molecular weight phosphatase family.
Probab=54.89 E-value=15 Score=28.05 Aligned_cols=36 Identities=19% Similarity=0.333 Sum_probs=27.9
Q ss_pred EEEEcCCC-hhHHHHHHHHHHcCCCcEEEcCcchHhh
Q 029506 33 ILMYCTGG-IRCDVYSTILRQRGFHNLYTLKGGVSHY 68 (192)
Q Consensus 33 IvlyC~~G-~Rs~~Aa~~L~~~Gf~~Vy~L~GGi~~w 68 (192)
|++.|++. -||..|..+|+++.=.++.....|+..|
T Consensus 1 vLFVC~~N~cRSpmAEa~~~~~~~~~~~v~SAG~~~~ 37 (140)
T smart00226 1 ILFVCTGNICRSPMAEALFKAIVGDRVKIDSAGTGAW 37 (140)
T ss_pred CEEEeCChhhhHHHHHHHHHHhcCCCEEEEcCcccCC
Confidence 68999775 6899999999986533466667788877
No 78
>PRK13530 arsenate reductase; Provisional
Probab=54.60 E-value=26 Score=27.17 Aligned_cols=36 Identities=19% Similarity=0.254 Sum_probs=26.1
Q ss_pred CeEEEEcCCC-hhHHHHHHHHHHcCCCcEEEcCcchH
Q 029506 31 TDILMYCTGG-IRCDVYSTILRQRGFHNLYTLKGGVS 66 (192)
Q Consensus 31 k~IvlyC~~G-~Rs~~Aa~~L~~~Gf~~Vy~L~GGi~ 66 (192)
+.|++.|++. -||..|..+|++..-.++.....|+.
T Consensus 4 ~~vLFvC~~N~cRS~mAEal~~~~~~~~~~v~SAG~~ 40 (133)
T PRK13530 4 KTIYFLCTGNSCRSQMAEGWGKQYLGDKWNVYSAGIE 40 (133)
T ss_pred CEEEEEcCCchhHHHHHHHHHHHhcCCCEEEECCCCC
Confidence 5799999875 68999999998754234544556653
No 79
>COG2888 Predicted Zn-ribbon RNA-binding protein with a function in translation [Translation, ribosomal structure and biogenesis]
Probab=53.01 E-value=13 Score=26.02 Aligned_cols=47 Identities=19% Similarity=0.409 Sum_probs=34.0
Q ss_pred ccccccCCCcc-ccccccccCCCCCC-ccEEeChhhhhccCCCCChhhh
Q 029506 114 FATCYICSSQV-RELRHRNCANLDCN-LLFLCCADCVKNLRGCCCLNCT 160 (192)
Q Consensus 114 ~~~C~~C~~~~-~~~~~~nC~n~~C~-~l~l~C~~C~~~~~~~c~~~C~ 160 (192)
.-.|..||... ...+++.=.-+.|. ..+.-|..|......+=|+.|-
T Consensus 9 ~~~CtSCg~~i~p~e~~v~F~CPnCGe~~I~Rc~~CRk~g~~Y~Cp~CG 57 (61)
T COG2888 9 PPVCTSCGREIAPGETAVKFPCPNCGEVEIYRCAKCRKLGNPYRCPKCG 57 (61)
T ss_pred CceeccCCCEeccCCceeEeeCCCCCceeeehhhhHHHcCCceECCCcC
Confidence 56899999877 33344444445788 8888899999887777777774
No 80
>cd00115 LMWPc Substituted updates: Aug 22, 2001
Probab=52.68 E-value=17 Score=27.96 Aligned_cols=37 Identities=24% Similarity=0.449 Sum_probs=28.1
Q ss_pred eEEEEcCCC-hhHHHHHHHHHHcCCC-cEEEcCcchHhh
Q 029506 32 DILMYCTGG-IRCDVYSTILRQRGFH-NLYTLKGGVSHY 68 (192)
Q Consensus 32 ~IvlyC~~G-~Rs~~Aa~~L~~~Gf~-~Vy~L~GGi~~w 68 (192)
+|++.|++. .||..|.++|++..-+ ++.....|+..+
T Consensus 2 ~iLfvc~~N~~RS~mAEai~~~~~~~~~~~v~SaG~~~~ 40 (141)
T cd00115 2 KVLFVCTGNICRSPMAEAIFRHLAPKLDIEVDSAGTSGW 40 (141)
T ss_pred eEEEEecChhhhhHHHHHHHHHHhhhCCEEEECCCCCCc
Confidence 699999775 6899999999986432 565667777654
No 81
>PRK14890 putative Zn-ribbon RNA-binding protein; Provisional
Probab=51.66 E-value=17 Score=25.27 Aligned_cols=45 Identities=20% Similarity=0.563 Sum_probs=32.2
Q ss_pred ccccccCCCcccccc---ccccCCCCCCcc-EEeChhhhhccCCCCChhhh
Q 029506 114 FATCYICSSQVRELR---HRNCANLDCNLL-FLCCADCVKNLRGCCCLNCT 160 (192)
Q Consensus 114 ~~~C~~C~~~~~~~~---~~nC~n~~C~~l-~l~C~~C~~~~~~~c~~~C~ 160 (192)
.-.|..||.+..... .-.|. .|... +.-|+.|......+=|+.|.
T Consensus 7 ~~~CtSCg~~i~~~~~~~~F~CP--nCG~~~I~RC~~CRk~~~~Y~CP~CG 55 (59)
T PRK14890 7 PPKCTSCGIEIAPREKAVKFLCP--NCGEVIIYRCEKCRKQSNPYTCPKCG 55 (59)
T ss_pred CccccCCCCcccCCCccCEeeCC--CCCCeeEeechhHHhcCCceECCCCC
Confidence 347999998776322 23454 68777 88899999888777777774
No 82
>COG2453 CDC14 Predicted protein-tyrosine phosphatase [Signal transduction mechanisms]
Probab=51.60 E-value=17 Score=29.60 Aligned_cols=25 Identities=20% Similarity=0.494 Sum_probs=17.3
Q ss_pred CeEEEEcCCC-hhHHHHHH--HHHHcCC
Q 029506 31 TDILMYCTGG-IRCDVYST--ILRQRGF 55 (192)
Q Consensus 31 k~IvlyC~~G-~Rs~~Aa~--~L~~~Gf 55 (192)
++|+++|.+| .||..+.. +|...|.
T Consensus 106 ~kVvVHC~~GigRSgtviaA~lm~~~~~ 133 (180)
T COG2453 106 KKVVVHCQGGIGRSGTVIAAYLMLYGGL 133 (180)
T ss_pred CeEEEEcCCCCchHHHHHHHHHHHHcCC
Confidence 6999999999 47775433 5555444
No 83
>PF12156 ATPase-cat_bd: Putative metal-binding domain of cation transport ATPase; InterPro: IPR021993 This domain is found in bacteria, and is approximately 90 amino acids in length. It is found associated with PF00403 from PFAM, PF00122 from PFAM, PF00702 from PFAM. The cysteine-rich nature and composition suggest this might be a cation-binding domain; most members are annotated as being cation transport ATPases.
Probab=51.08 E-value=10 Score=27.78 Aligned_cols=17 Identities=29% Similarity=0.544 Sum_probs=12.5
Q ss_pred cccceeecccccccccc
Q 029506 174 RYKKWHLYRDSEVQSQL 190 (192)
Q Consensus 174 ~~~~~~~~~~~~~~~~~ 190 (192)
.-..|..|.+.+++.+.
T Consensus 65 ~~~~~~~~D~~~v~~~f 81 (88)
T PF12156_consen 65 QLEDLAYYDDPEVQQKF 81 (88)
T ss_pred cHHHHHHcCCHHHHHHH
Confidence 34578889888887764
No 84
>PF12368 DUF3650: Protein of unknown function (DUF3650) ; InterPro: IPR022111 This domain family is found in bacteria, and is approximately 30 amino acids in length. The family is found in association with PF00581 from PFAM. There is a single completely conserved residue N that may be functionally important.
Probab=47.81 E-value=5.7 Score=23.65 Aligned_cols=12 Identities=33% Similarity=0.659 Sum_probs=10.7
Q ss_pred hhhcccCCCCCC
Q 029506 158 NCTTAPQRRPVL 169 (192)
Q Consensus 158 ~C~~~~~~r~~~ 169 (192)
+|+.+||+|+|.
T Consensus 1 ECr~hprNrYV~ 12 (28)
T PF12368_consen 1 ECRVHPRNRYVK 12 (28)
T ss_pred CcccCcchhhHH
Confidence 599999999987
No 85
>COG3453 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=47.47 E-value=20 Score=28.57 Aligned_cols=17 Identities=29% Similarity=0.526 Sum_probs=14.7
Q ss_pred CeEEEEcCCChhHHHHH
Q 029506 31 TDILMYCTGGIRCDVYS 47 (192)
Q Consensus 31 k~IvlyC~~G~Rs~~Aa 47 (192)
.||+.||++|.||...=
T Consensus 88 gPVlayCrsGtRs~~ly 104 (130)
T COG3453 88 GPVLAYCRSGTRSLNLY 104 (130)
T ss_pred CCEEeeecCCchHHHHH
Confidence 69999999999997643
No 86
>PRK09590 celB cellobiose phosphotransferase system IIB component; Reviewed
Probab=46.05 E-value=26 Score=26.49 Aligned_cols=36 Identities=11% Similarity=0.240 Sum_probs=23.5
Q ss_pred CeEEEEcCCChhHHHHHHHHH----HcCCCcEEEcCcchHh
Q 029506 31 TDILMYCTGGIRCDVYSTILR----QRGFHNLYTLKGGVSH 67 (192)
Q Consensus 31 k~IvlyC~~G~Rs~~Aa~~L~----~~Gf~~Vy~L~GGi~~ 67 (192)
++|++.|.+|..|-.++..++ ++|++ +..-..++..
T Consensus 2 kkILlvCg~G~STSlla~k~k~~~~e~gi~-~~i~a~~~~e 41 (104)
T PRK09590 2 KKALIICAAGMSSSMMAKKTTEYLKEQGKD-IEVDAITATE 41 (104)
T ss_pred cEEEEECCCchHHHHHHHHHHHHHHHCCCc-eEEEEecHHH
Confidence 479999999998777666654 46774 3333334443
No 87
>PTZ00242 protein tyrosine phosphatase; Provisional
Probab=46.01 E-value=28 Score=28.11 Aligned_cols=24 Identities=25% Similarity=0.421 Sum_probs=17.9
Q ss_pred CeEEEEcCCC-hhHHH-HHHHHHHcC
Q 029506 31 TDILMYCTGG-IRCDV-YSTILRQRG 54 (192)
Q Consensus 31 k~IvlyC~~G-~Rs~~-Aa~~L~~~G 54 (192)
.+|+++|..| .||.. ++.+|.+.|
T Consensus 99 ~~V~VHC~aGigRSgt~~a~yL~~~~ 124 (166)
T PTZ00242 99 ETIAVHCVAGLGRAPILVALALVEYG 124 (166)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHhC
Confidence 6999999888 57775 466666654
No 88
>TIGR00853 pts-lac PTS system, lactose/cellobiose family IIB component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains.The Lac family includes several sequenced lactose (b-galactoside) permeases of Gram-positive bacteria as well as those in E. coli. While the Lac family usually consists of two polypeptide components IIA and IICB, the Chb permease of E. coli consists of three IIA, IIB and IIC. This family is specific for the IIB subunit of the Lac PTS family.
Probab=44.07 E-value=30 Score=25.49 Aligned_cols=37 Identities=19% Similarity=0.412 Sum_probs=24.1
Q ss_pred CeEEEEcCCChhHHHHHHHHH----HcCCCcEEEcCcchHhh
Q 029506 31 TDILMYCTGGIRCDVYSTILR----QRGFHNLYTLKGGVSHY 68 (192)
Q Consensus 31 k~IvlyC~~G~Rs~~Aa~~L~----~~Gf~~Vy~L~GGi~~w 68 (192)
++|++.|.+|+-|-.++..++ ++|++ +-.-..++...
T Consensus 4 ~~ILl~C~~G~sSS~l~~k~~~~~~~~gi~-~~v~a~~~~~~ 44 (95)
T TIGR00853 4 TNILLLCAAGMSTSLLVNKMNKAAEEYGVP-VKIAAGSYGAA 44 (95)
T ss_pred cEEEEECCCchhHHHHHHHHHHHHHHCCCc-EEEEEecHHHH
Confidence 689999999988776655554 46774 33333445443
No 89
>smart00291 ZnF_ZZ Zinc-binding domain, present in Dystrophin, CREB-binding protein. Putative zinc-binding domain present in dystrophin-like proteins, and CREB-binding protein/p300 homologues. The ZZ in dystrophin appears to bind calmodulin. A missense mutation of one of the conserved cysteines in dystrophin results in a patient with Duchenne muscular dystrophy [3].
Probab=42.78 E-value=19 Score=22.78 Aligned_cols=32 Identities=22% Similarity=0.650 Sum_probs=23.0
Q ss_pred cccccCCCccccccccccCCCCCCccEEeChhhhhc
Q 029506 115 ATCYICSSQVRELRHRNCANLDCNLLFLCCADCVKN 150 (192)
Q Consensus 115 ~~C~~C~~~~~~~~~~nC~n~~C~~l~l~C~~C~~~ 150 (192)
..|..|+.+....|| .|. .|. -+-+|++|-.+
T Consensus 5 ~~C~~C~~~i~g~ry-~C~--~C~-d~dlC~~Cf~~ 36 (44)
T smart00291 5 YSCDTCGKPIVGVRY-HCL--VCP-DYDLCQSCFAK 36 (44)
T ss_pred cCCCCCCCCCcCCEE-ECC--CCC-CccchHHHHhC
Confidence 479999998887666 466 564 37777887654
No 90
>PRK11391 etp phosphotyrosine-protein phosphatase; Provisional
Probab=42.03 E-value=39 Score=26.58 Aligned_cols=37 Identities=30% Similarity=0.468 Sum_probs=27.2
Q ss_pred CeEEEEcCCC-hhHHHHHHHHHHcCCCcEEEcCcchHhh
Q 029506 31 TDILMYCTGG-IRCDVYSTILRQRGFHNLYTLKGGVSHY 68 (192)
Q Consensus 31 k~IvlyC~~G-~Rs~~Aa~~L~~~Gf~~Vy~L~GGi~~w 68 (192)
+.|++.|++. -||-.|.++|++.. .++..-..|...|
T Consensus 3 ~~ILfVC~gN~cRSpmAEa~~~~~~-~~~~v~SaG~~~~ 40 (144)
T PRK11391 3 NSILVVCTGNICRSPIGERLLRKRL-PGVKVKSAGVHGL 40 (144)
T ss_pred CeEEEEcCCcHhHHHHHHHHHHHhc-CCeEEEcccccCC
Confidence 4799999875 68999999999864 2344455677665
No 91
>cd00079 HELICc Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may not be an autonomously folding unit, but an integral part of the helicase; 4 helicase superfamilies at present according to the organization of their signature motifs; all helicases share the ability to unwind nucleic acid duplexes with a distinct directional polarity; they utilize the free energy from nucleoside triphosphate hydrolysis to fuel their translocation along DNA, unwinding the duplex in the process
Probab=41.92 E-value=45 Score=23.90 Aligned_cols=35 Identities=26% Similarity=0.519 Sum_probs=29.9
Q ss_pred CeEEEEcCCChhHHHHHHHHHHcCCCcEEEcCcchH
Q 029506 31 TDILMYCTGGIRCDVYSTILRQRGFHNLYTLKGGVS 66 (192)
Q Consensus 31 k~IvlyC~~G~Rs~~Aa~~L~~~Gf~~Vy~L~GGi~ 66 (192)
.++++||..-...+.+...|++.++ .+..+.|++.
T Consensus 29 ~~~lvf~~~~~~~~~~~~~l~~~~~-~~~~~~~~~~ 63 (131)
T cd00079 29 GKVLIFCPSKKMLDELAELLRKPGI-KVAALHGDGS 63 (131)
T ss_pred CcEEEEeCcHHHHHHHHHHHHhcCC-cEEEEECCCC
Confidence 6899999999999999999998776 5778888753
No 92
>cd05565 PTS_IIB_lactose PTS_IIB_lactose: subunit IIB of enzyme II (EII) of the lactose-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS) found in Firmicutes as well as Actinobacteria. In this system, EII is a lactose-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. The IIC and IIB domains are expressed as a single protein from the lac operon. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include lactose, chitobiose/lichenan, ascorbate, galactitol, mannitol, fructose, and a sensory system with similarity to the bacterial bgl system.
Probab=40.43 E-value=33 Score=25.74 Aligned_cols=36 Identities=25% Similarity=0.509 Sum_probs=23.9
Q ss_pred eEEEEcCCChhHHHHHHHHH----HcCCCcEEEcCcchHhh
Q 029506 32 DILMYCTGGIRCDVYSTILR----QRGFHNLYTLKGGVSHY 68 (192)
Q Consensus 32 ~IvlyC~~G~Rs~~Aa~~L~----~~Gf~~Vy~L~GGi~~w 68 (192)
.|++.|.+|..|-.++..++ ++|+. +..-..++...
T Consensus 2 ~Ill~C~~GaSSs~la~km~~~a~~~gi~-~~i~a~~~~e~ 41 (99)
T cd05565 2 NVLVLCAGGGTSGLLANALNKGAKERGVP-LEAAAGAYGSH 41 (99)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCc-EEEEEeeHHHH
Confidence 48999999988887776665 46873 44334444443
No 93
>PF13344 Hydrolase_6: Haloacid dehalogenase-like hydrolase; PDB: 2HO4_B 1YV9_A 1WVI_B 3EPR_A 2P27_A 2OYC_A 2CFT_A 2P69_A 2CFS_A 2CFR_A ....
Probab=39.76 E-value=9.8 Score=28.12 Aligned_cols=31 Identities=16% Similarity=0.368 Sum_probs=22.9
Q ss_pred CCCCCCeEEEEcCCChhH-HHHHHHHHHcCCC
Q 029506 26 LDKEKTDILMYCTGGIRC-DVYSTILRQRGFH 56 (192)
Q Consensus 26 l~k~~k~IvlyC~~G~Rs-~~Aa~~L~~~Gf~ 56 (192)
|.+..+++++.=+++.|+ +..++.|+++||.
T Consensus 26 L~~~g~~~~~lTNns~~s~~~~~~~L~~~Gi~ 57 (101)
T PF13344_consen 26 LRERGKPVVFLTNNSSRSREEYAKKLKKLGIP 57 (101)
T ss_dssp HHHTTSEEEEEES-SSS-HHHHHHHHHHTTTT
T ss_pred HHHcCCCEEEEeCCCCCCHHHHHHHHHhcCcC
Confidence 333337899999888887 7889999999985
No 94
>smart00012 PTPc_DSPc Protein tyrosine phosphatase, catalytic domain, undefined specificity. Protein tyrosine phosphatases. Homologues detected by this profile and not by those of "PTPc" or "DSPc" are predicted to be protein phosphatases with a similar fold to DSPs and PTPs, yet with unpredicted specificities.
Probab=38.78 E-value=33 Score=23.76 Aligned_cols=16 Identities=19% Similarity=0.731 Sum_probs=12.6
Q ss_pred CeEEEEcCCCh-hHHHH
Q 029506 31 TDILMYCTGGI-RCDVY 46 (192)
Q Consensus 31 k~IvlyC~~G~-Rs~~A 46 (192)
.||+++|..|. |+...
T Consensus 40 ~pvlVHC~~G~gRtg~~ 56 (105)
T smart00012 40 GPVVVHCSAGVGRTGTF 56 (105)
T ss_pred CCEEEEeCCCCChhhHH
Confidence 69999998775 77753
No 95
>smart00404 PTPc_motif Protein tyrosine phosphatase, catalytic domain motif.
Probab=38.78 E-value=33 Score=23.76 Aligned_cols=16 Identities=19% Similarity=0.731 Sum_probs=12.6
Q ss_pred CeEEEEcCCCh-hHHHH
Q 029506 31 TDILMYCTGGI-RCDVY 46 (192)
Q Consensus 31 k~IvlyC~~G~-Rs~~A 46 (192)
.||+++|..|. |+...
T Consensus 40 ~pvlVHC~~G~gRtg~~ 56 (105)
T smart00404 40 GPVVVHCSAGVGRTGTF 56 (105)
T ss_pred CCEEEEeCCCCChhhHH
Confidence 69999998775 77753
No 96
>TIGR02691 arsC_pI258_fam arsenate reductase (thioredoxin). This family describes the well-studied thioredoxin-dependent arsenate reductase of Staphylococcus aureaus plasmid pI258 and other mechanistically similar arsenate reductases. The mechanism involves an intramolecular disulfide bond cascade, and aligned members of this family have four absolutely conserved Cys residues. This group of arsenate reductases belongs to the low-molecular weight protein-tyrosine phosphatase family (pfam01451), as does a group of glutathione/glutaredoxin type arsenate reductases (TIGR02689). At least two other, non-homologous groups of arsenate reductases involved in arsenical resistance are also known. This enzyme reduces arsenate to arsenite, which may be more toxic but which is more easily exported.
Probab=38.41 E-value=47 Score=25.58 Aligned_cols=34 Identities=18% Similarity=0.244 Sum_probs=25.0
Q ss_pred EEEEcCCC-hhHHHHHHHHHHcCCCcEEEcCcchH
Q 029506 33 ILMYCTGG-IRCDVYSTILRQRGFHNLYTLKGGVS 66 (192)
Q Consensus 33 IvlyC~~G-~Rs~~Aa~~L~~~Gf~~Vy~L~GGi~ 66 (192)
|++.|++. .||..|..+|++..-.++.....|+.
T Consensus 1 iLFvC~~N~~RS~mAea~~~~~~~~~~~v~SaG~~ 35 (129)
T TIGR02691 1 IYFLCTGNSCRSQMAEGWGKKYLGDEWEVYSAGIE 35 (129)
T ss_pred CEEEcCCchHHHHHHHHHHHHhcCCCEEEEcCCCC
Confidence 68999775 68999999998863245555667764
No 97
>cd05564 PTS_IIB_chitobiose_lichenan PTS_IIB_chitobiose_lichenan: subunit IIB of enzyme II (EII) of the N,N-diacetylchitobiose-specific and lichenan-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In these systems, EII is either a lichenan- or an N,N-diacetylchitobiose-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. In the chitobiose system, these subunits are expressed as separate proteins from chbA, chbB, and chbC of the chb operon (formerly the cel (cellulose) operon). In the lichenan system, these subunits are expressed from licA, licB, and licC of the lic operon. The lic operon of Bacillus subtilis is required for the transport and degradation of oligomeric beta-glucosides, which are produced by extracellular enzymes on substrates such as lichenan or barley glucan. The lic operon is transcribed from a gammaA-dependent promoter and is inducible by lichenan, lichenan hydrolysate, and cellobiose. The IIB d
Probab=37.93 E-value=38 Score=24.80 Aligned_cols=36 Identities=19% Similarity=0.376 Sum_probs=22.7
Q ss_pred eEEEEcCCChhHHHHHHHHH----HcCCCcEEEcCcchHhh
Q 029506 32 DILMYCTGGIRCDVYSTILR----QRGFHNLYTLKGGVSHY 68 (192)
Q Consensus 32 ~IvlyC~~G~Rs~~Aa~~L~----~~Gf~~Vy~L~GGi~~w 68 (192)
+|++.|.+|+.|-.++..++ ++|+. +..-..++...
T Consensus 1 kIl~~Cg~G~sTS~~~~ki~~~~~~~~~~-~~v~~~~~~~~ 40 (96)
T cd05564 1 KILLVCSAGMSTSILVKKMKKAAEKRGID-AEIEAVPESEL 40 (96)
T ss_pred CEEEEcCCCchHHHHHHHHHHHHHHCCCc-eEEEEecHHHH
Confidence 38999999998776666554 46764 33333444443
No 98
>PF01753 zf-MYND: MYND finger; InterPro: IPR002893 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents MYND-type zinc finger domains. The MYND domain (myeloid, Nervy, and DEAF-1) is present in a large group of proteins that includes RP-8 (PDCD2), Nervy, and predicted proteins from Drosophila, mammals, Caenorhabditis elegans, yeast, and plants [, , ]. The MYND domain consists of a cluster of cysteine and histidine residues, arranged with an invariant spacing to form a potential zinc-binding motif []. Mutating conserved cysteine residues in the DEAF-1 MYND domain does not abolish DNA binding, which suggests that the MYND domain might be involved in protein-protein interactions []. Indeed, the MYND domain of ETO/MTG8 interacts directly with the N-CoR and SMRT co-repressors [, ]. Aberrant recruitment of co-repressor complexes and inappropriate transcriptional repression is believed to be a general mechanism of leukemogenesis caused by the t(8;21) translocations that fuse ETO with the acute myelogenous leukemia 1 (AML1) protein. ETO has been shown to be a co-repressor recruited by the promyelocytic leukemia zinc finger (PLZF) protein []. A divergent MYND domain present in the adenovirus E1A binding protein BS69 was also shown to interact with N-CoR and mediate transcriptional repression []. The current evidence suggests that the MYND motif in mammalian proteins constitutes a protein-protein interaction domain that functions as a co-repressor-recruiting interface. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 3QWW_A 3QWV_A 3TG5_A 3S7F_A 3RIB_B 3TG4_A 3S7J_A 3S7D_A 3S7B_A 3RU0_A ....
Probab=37.14 E-value=16 Score=22.11 Aligned_cols=18 Identities=28% Similarity=0.680 Sum_probs=12.1
Q ss_pred eChhhhhccCCCCChhhhcc
Q 029506 143 CCADCVKNLRGCCCLNCTTA 162 (192)
Q Consensus 143 ~C~~C~~~~~~~c~~~C~~~ 162 (192)
.|..|... .+||++|+..
T Consensus 11 ~C~~C~~~--~YCs~~Cq~~ 28 (37)
T PF01753_consen 11 RCSRCKSV--YYCSEECQRA 28 (37)
T ss_dssp EETTTSSS--EESSHHHHHH
T ss_pred cCCCCCCE--EecCHHHHHH
Confidence 66777544 3688888765
No 99
>PF08394 Arc_trans_TRASH: Archaeal TRASH domain; InterPro: IPR013603 This region is found in the C terminus of a number of archaeal transcriptional regulators. It is thought to function as a metal-sensing regulatory module [].
Probab=36.36 E-value=19 Score=22.69 Aligned_cols=33 Identities=15% Similarity=0.680 Sum_probs=18.6
Q ss_pred cccCCCccccccccccCCCCCCccEEeChhhhhcc
Q 029506 117 CYICSSQVRELRHRNCANLDCNLLFLCCADCVKNL 151 (192)
Q Consensus 117 C~~C~~~~~~~~~~nC~n~~C~~l~l~C~~C~~~~ 151 (192)
|..||.+.....++ ....=...+++|+.|...+
T Consensus 1 Cd~CG~~I~~eP~~--~k~~~~~y~fCC~tC~~~f 33 (37)
T PF08394_consen 1 CDYCGGEITGEPIV--VKIGNKVYYFCCPTCLSQF 33 (37)
T ss_pred CCccCCcccCCEEE--EEECCeEEEEECHHHHHHH
Confidence 66777776543321 1112245677888887654
No 100
>PRK13604 luxD acyl transferase; Provisional
Probab=36.13 E-value=63 Score=29.11 Aligned_cols=30 Identities=13% Similarity=0.295 Sum_probs=20.4
Q ss_pred CeEEEEcCC--Chh--HHHHHHHHHHcCCCcEEEc
Q 029506 31 TDILMYCTG--GIR--CDVYSTILRQRGFHNLYTL 61 (192)
Q Consensus 31 k~IvlyC~~--G~R--s~~Aa~~L~~~Gf~~Vy~L 61 (192)
+++|+.|.+ +.+ ..+.|++|.++|| +|+..
T Consensus 37 ~~~vIi~HGf~~~~~~~~~~A~~La~~G~-~vLrf 70 (307)
T PRK13604 37 NNTILIASGFARRMDHFAGLAEYLSSNGF-HVIRY 70 (307)
T ss_pred CCEEEEeCCCCCChHHHHHHHHHHHHCCC-EEEEe
Confidence 466666754 332 5578999999999 46544
No 101
>PTZ00393 protein tyrosine phosphatase; Provisional
Probab=35.77 E-value=46 Score=29.17 Aligned_cols=26 Identities=23% Similarity=0.416 Sum_probs=19.9
Q ss_pred CeEEEEcCCC-hhHH-HHHHHHHHcCCC
Q 029506 31 TDILMYCTGG-IRCD-VYSTILRQRGFH 56 (192)
Q Consensus 31 k~IvlyC~~G-~Rs~-~Aa~~L~~~Gf~ 56 (192)
++|+|+|..| .|+. .++.+|.+.|+.
T Consensus 171 ~~VaVHC~AGlGRTGtl~AayLI~~Gms 198 (241)
T PTZ00393 171 RAVAVHCVAGLGRAPVLASIVLIEFGMD 198 (241)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHcCCC
Confidence 6899999887 4655 567788778864
No 102
>PRK10499 PTS system N,N'-diacetylchitobiose-specific transporter subunit IIB; Provisional
Probab=35.62 E-value=46 Score=25.05 Aligned_cols=21 Identities=19% Similarity=0.675 Sum_probs=17.2
Q ss_pred CeEEEEcCCChhHHHHHHHHH
Q 029506 31 TDILMYCTGGIRCDVYSTILR 51 (192)
Q Consensus 31 k~IvlyC~~G~Rs~~Aa~~L~ 51 (192)
++|++.|.+|.-|-..+..|+
T Consensus 4 kkIllvC~~G~sTSll~~km~ 24 (106)
T PRK10499 4 KHIYLFCSAGMSTSLLVSKMR 24 (106)
T ss_pred CEEEEECCCCccHHHHHHHHH
Confidence 579999999999887775554
No 103
>PRK10310 PTS system galactitol-specific transporter subunit IIB; Provisional
Probab=34.84 E-value=58 Score=23.81 Aligned_cols=26 Identities=12% Similarity=0.397 Sum_probs=17.9
Q ss_pred CeEEEEcCCChh-HHHHH----HHHHHcCCC
Q 029506 31 TDILMYCTGGIR-CDVYS----TILRQRGFH 56 (192)
Q Consensus 31 k~IvlyC~~G~R-s~~Aa----~~L~~~Gf~ 56 (192)
++|++.|.+|.- |..++ +.|.++|+.
T Consensus 3 ~kILvvCgsG~~TS~m~~~ki~~~l~~~gi~ 33 (94)
T PRK10310 3 RKIIVACGGAVATSTMAAEEIKELCQSHNIP 33 (94)
T ss_pred CeEEEECCCchhHHHHHHHHHHHHHHHCCCe
Confidence 369999999984 44433 455667874
No 104
>PF03162 Y_phosphatase2: Tyrosine phosphatase family; InterPro: IPR004861 Protein tyrosine (pTyr) phosphorylation is a common post-translational modification which can create novel recognition motifs for protein interactions and cellular localisation, affect protein stability, and regulate enzyme activity. Consequently, maintaining an appropriate level of protein tyrosine phosphorylation is essential for many cellular functions. Tyrosine-specific protein phosphatases (PTPase; 3.1.3.48 from EC) catalyse the removal of a phosphate group attached to a tyrosine residue, using a cysteinyl-phosphate enzyme intermediate. These enzymes are key regulatory components in signal transduction pathways (such as the MAP kinase pathway) and cell cycle control, and are important in the control of cell growth, proliferation, differentiation and transformation [, ]. The PTP superfamily can be divided into four subfamilies []: (1) pTyr-specific phosphatases (2) dual specificity phosphatases (dTyr and dSer/dThr) (3) Cdc25 phosphatases (dTyr and/or dThr) (4) LMW (low molecular weight) phosphatases Based on their cellular localisation, PTPases are also classified as: Receptor-like, which are transmembrane receptors that contain PTPase domains [] Non-receptor (intracellular) PTPases [] All PTPases carry the highly conserved active site motif C(X)5R (PTP signature motif), employ a common catalytic mechanism, and share a similar core structure made of a central parallel beta-sheet with flanking alpha-helices containing a beta-loop-alpha-loop that encompasses the PTP signature motif []. Functional diversity between PTPases is endowed by regulatory domains and subunits. This entry represents protein-tyrosine phosphatases predominantly from fungi, plants and bacteria, several of which are putative enzymes. These proteins are closely related to the Y-phosphatase and DSPc families. This entry includes the PTPase SIW14 from Saccharomyces cerevisiae (Baker's yeast), which plays a role in actin filament organisation and endocytosis.; PDB: 2Q47_A 1XRI_A.
Probab=33.54 E-value=30 Score=28.04 Aligned_cols=40 Identities=25% Similarity=0.434 Sum_probs=25.3
Q ss_pred CCCCCeEEEEcCCC-hhHHHHHHHHHHc-CCCcEEEcCcchHhhhh
Q 029506 27 DKEKTDILMYCTGG-IRCDVYSTILRQR-GFHNLYTLKGGVSHYLE 70 (192)
Q Consensus 27 ~k~~k~IvlyC~~G-~Rs~~Aa~~L~~~-Gf~~Vy~L~GGi~~w~~ 70 (192)
++...||+++|..| .|+..+...|++. |. ++..=+..|..
T Consensus 88 d~~n~PvLiHC~~G~~rTG~vvg~lRk~Q~W----~~~~i~~Ey~~ 129 (164)
T PF03162_consen 88 DPRNYPVLIHCNHGKDRTGLVVGCLRKLQGW----SLSSIFDEYRR 129 (164)
T ss_dssp -GGG-SEEEE-SSSSSHHHHHHHHHHHHTTB-----HHHHHHHHHH
T ss_pred CCCCCCEEEEeCCCCcchhhHHHHHHHHcCC----CHHHHHHHHHH
Confidence 33347999999776 6899999999864 44 35544555554
No 105
>PF05706 CDKN3: Cyclin-dependent kinase inhibitor 3 (CDKN3); InterPro: IPR022778 This entry represents a domain found in cyclin-dependent kinase inhibitor 3 or kinase associated phosphatase proteins from several mammalian species. The cyclin-dependent kinase (Cdk)-associated protein phosphatase (KAP) is a human dual specificity protein phosphatase that dephosphorylates Cdk2 on threonine 160 in a cyclin-dependent manner [], []. This domain is also found in MAP kinase phosphatase and esterases. This entry contains both eukaryotic and bacterial proteins.; GO: 0004721 phosphoprotein phosphatase activity, 0004725 protein tyrosine phosphatase activity; PDB: 1FQ1_A 1FPZ_F.
Probab=32.08 E-value=51 Score=27.38 Aligned_cols=24 Identities=33% Similarity=0.606 Sum_probs=15.6
Q ss_pred CeEEEEcCCC-hhHH-HHHHHHHHcC
Q 029506 31 TDILMYCTGG-IRCD-VYSTILRQRG 54 (192)
Q Consensus 31 k~IvlyC~~G-~Rs~-~Aa~~L~~~G 54 (192)
++|+++|.+| .|+- .||.+|.+.|
T Consensus 134 ~~V~vHC~GGlGRtGlvAAcLLl~L~ 159 (168)
T PF05706_consen 134 RKVLVHCRGGLGRTGLVAACLLLELG 159 (168)
T ss_dssp --EEEE-SSSSSHHHHHHHHHHHHH-
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHc
Confidence 6899999998 4655 5777887766
No 106
>COG0394 Wzb Protein-tyrosine-phosphatase [Signal transduction mechanisms]
Probab=32.06 E-value=68 Score=25.28 Aligned_cols=37 Identities=24% Similarity=0.401 Sum_probs=29.3
Q ss_pred CeEEEEcCCC-hhHHHHHHHHHHcCCCcEEEcCcchHh
Q 029506 31 TDILMYCTGG-IRCDVYSTILRQRGFHNLYTLKGGVSH 67 (192)
Q Consensus 31 k~IvlyC~~G-~Rs~~Aa~~L~~~Gf~~Vy~L~GGi~~ 67 (192)
++|+++|++. -||..|-.+|++..-.++..-..|..+
T Consensus 3 ~kVLFVC~gN~cRSpmAE~l~~~~~~~~~~v~SAGt~~ 40 (139)
T COG0394 3 MKVLFVCTGNICRSPMAEALLRHLAPDNVEVDSAGTGG 40 (139)
T ss_pred ceEEEEcCCCcccCHHHHHHHHHhccCCeEEECCccCC
Confidence 5799999875 699999999998743567667777655
No 107
>cd02340 ZZ_NBR1_like Zinc finger, ZZ type. Zinc finger present in Drosophila ref(2)P, NBR1, Human sequestosome 1 and related proteins. The ZZ motif coordinates two zinc ions and most likely participates in ligand binding or molecular scaffolding. Drosophila ref(2)P appears to control the multiplication of sigma rhabdovirus. NBR1 (Next to BRCA1 gene 1 protein) interacts with fasciculation and elongation protein zeta-1 (FEZ1) and calcium and integrin binding protein (CIB), and may function in cell signalling pathways. Sequestosome 1 is a phosphotyrosine independent ligand for the Lck SH2 domain and binds noncovalently to ubiquitin via its UBA domain.
Probab=31.70 E-value=34 Score=21.77 Aligned_cols=31 Identities=23% Similarity=0.608 Sum_probs=20.4
Q ss_pred ccccCCCccccccccccCCCCCCccEEeChhhhhc
Q 029506 116 TCYICSSQVRELRHRNCANLDCNLLFLCCADCVKN 150 (192)
Q Consensus 116 ~C~~C~~~~~~~~~~nC~n~~C~~l~l~C~~C~~~ 150 (192)
.|..|+.|..-.|| .|. .|.. +-+|.+|...
T Consensus 2 ~Cd~C~~~i~G~ry-~C~--~C~d-~dLC~~C~~~ 32 (43)
T cd02340 2 ICDGCQGPIVGVRY-KCL--VCPD-YDLCESCEAK 32 (43)
T ss_pred CCCCCCCcCcCCeE-ECC--CCCC-ccchHHhhCc
Confidence 58889988766554 366 4553 6677777653
No 108
>PF00782 DSPc: Dual specificity phosphatase, catalytic domain; InterPro: IPR000340 Protein tyrosine (pTyr) phosphorylation is a common post-translational modification which can create novel recognition motifs for protein interactions and cellular localisation, affect protein stability, and regulate enzyme activity. Consequently, maintaining an appropriate level of protein tyrosine phosphorylation is essential for many cellular functions. Tyrosine-specific protein phosphatases (PTPase; 3.1.3.48 from EC) catalyse the removal of a phosphate group attached to a tyrosine residue, using a cysteinyl-phosphate enzyme intermediate. These enzymes are key regulatory components in signal transduction pathways (such as the MAP kinase pathway) and cell cycle control, and are important in the control of cell growth, proliferation, differentiation and transformation [, ]. The PTP superfamily can be divided into four subfamilies []: (1) pTyr-specific phosphatases (2) dual specificity phosphatases (dTyr and dSer/dThr) (3) Cdc25 phosphatases (dTyr and/or dThr) (4) LMW (low molecular weight) phosphatases Based on their cellular localisation, PTPases are also classified as: Receptor-like, which are transmembrane receptors that contain PTPase domains [] Non-receptor (intracellular) PTPases [] All PTPases carry the highly conserved active site motif C(X)5R (PTP signature motif), employ a common catalytic mechanism, and share a similar core structure made of a central parallel beta-sheet with flanking alpha-helices containing a beta-loop-alpha-loop that encompasses the PTP signature motif []. Functional diversity between PTPases is endowed by regulatory domains and subunits. This entry represents dual specificity protein-tyrosine phosphatases. Ser/Thr and Tyr dual specificity phosphatases are a group of enzymes with both Ser/Thr (3.1.3.16 from EC) and tyrosine specific protein phosphatase (3.1.3.48 from EC) activity able to remove both the serine/threonine or tyrosine-bound phosphate group from a wide range of phosphoproteins, including a number of enzymes which have been phosphorylated under the action of a kinase. Dual specificity protein phosphatases (DSPs) regulate mitogenic signal transduction and control the cell cycle. The crystal structure of a human DSP, vaccinia H1-related phosphatase (or VHR), has been determined at 2.1 angstrom resolution []. A shallow active site pocket in VHR allows for the hydrolysis of phosphorylated serine, threonine, or tyrosine protein residues, whereas the deeper active site of protein tyrosine phosphatases (PTPs) restricts substrate specificity to only phosphotyrosine. Positively charged crevices near the active site may explain the enzyme's preference for substrates with two phosphorylated residues. The VHR structure defines a conserved structural scaffold for both DSPs and PTPs. A "recognition region" connecting helix alpha1 to strand beta1, may determine differences in substrate specificity between VHR, the PTPs, and other DSPs. These proteins may also have inactive phosphatase domains, and dependent on the domain composition this loss of catalytic activity has different effects on protein function. Inactive single domain phosphatases can still specifically bind substrates, and protect again dephosphorylation, while the inactive domains of tandem phosphatases can be further subdivided into two classes. Those which bind phosphorylated tyrosine residues may recruit multi-phosphorylated substrates for the adjacent active domains and are more conserved, while the other class have accumulated several variable amino acid substitutions and have a complete loss of tyrosine binding capability. The second class shows a release of evolutionary constraint for the sites around the catalytic centre, which emphasises a difference in function from the first group. There is a region of higher conservation common to both classes, suggesting a new regulatory centre [].; GO: 0008138 protein tyrosine/serine/threonine phosphatase activity, 0006470 protein dephosphorylation; PDB: 2G6Z_A 1MKP_A 1YZ4_A 2P4D_A 1M3G_A 1ZZW_A 2OUD_A 2HXP_A 3LJ8_A 1OHD_A ....
Probab=31.51 E-value=72 Score=23.62 Aligned_cols=25 Identities=24% Similarity=0.581 Sum_probs=17.9
Q ss_pred CeEEEEcCCCh-hHHH-HHHHHHH-cCC
Q 029506 31 TDILMYCTGGI-RCDV-YSTILRQ-RGF 55 (192)
Q Consensus 31 k~IvlyC~~G~-Rs~~-Aa~~L~~-~Gf 55 (192)
++|+++|..|. ||.. ++.+|.. .|.
T Consensus 74 ~~VlVHC~~G~~RS~~v~~ayLm~~~~~ 101 (133)
T PF00782_consen 74 GKVLVHCKAGLSRSGAVAAAYLMKKNGM 101 (133)
T ss_dssp SEEEEEESSSSSHHHHHHHHHHHHHHTS
T ss_pred ceeEEEeCCCcccchHHHHHHHHHHcCC
Confidence 68999999985 7664 5555554 565
No 109
>cd00133 PTS_IIB PTS_IIB: subunit IIB of enzyme II (EII) is the central energy-coupling domain of the phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In the multienzyme PTS complex, EII is a carbohydrate-specific permease consisting of two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include chitobiose/lichenan, ascorbate, lactose, galactitol, mannitol, fructose, and a sensory system with similarity to the bacterial bgl system. The PTS is found only in bacteria, where it catalyzes the transport and phosphorylation of numerous monosaccharides, disaccharides, polyols, amino sugars, and other sugar derivatives. The four proteins (domains) forming the PTS phosphorylation cascade (EI, HPr, EIIA, and EIIB), can phosphorylate or interact with numerous non-PTS proteins thereby r
Probab=31.34 E-value=57 Score=21.55 Aligned_cols=21 Identities=24% Similarity=0.456 Sum_probs=15.0
Q ss_pred eEEEEcCCC-hhHHHHHHHHHH
Q 029506 32 DILMYCTGG-IRCDVYSTILRQ 52 (192)
Q Consensus 32 ~IvlyC~~G-~Rs~~Aa~~L~~ 52 (192)
.|++.|.+| ..|..++..|++
T Consensus 1 ~il~vc~~G~~~s~~l~~~l~~ 22 (84)
T cd00133 1 KILVVCGSGIGSSSMLAEKLEK 22 (84)
T ss_pred CEEEECCCcHhHHHHHHHHHHH
Confidence 388999999 456666666654
No 110
>PF13350 Y_phosphatase3: Tyrosine phosphatase family; PDB: 1YWF_A 2OZ5_B.
Probab=30.20 E-value=56 Score=25.76 Aligned_cols=25 Identities=32% Similarity=0.529 Sum_probs=16.0
Q ss_pred CeEEEEcCCC-hhHHHHHHHHHH-cCC
Q 029506 31 TDILMYCTGG-IRCDVYSTILRQ-RGF 55 (192)
Q Consensus 31 k~IvlyC~~G-~Rs~~Aa~~L~~-~Gf 55 (192)
.|++++|+.| -|.-.++.+|.. .|.
T Consensus 125 ~p~l~HC~aGKDRTG~~~alll~~lGV 151 (164)
T PF13350_consen 125 GPVLFHCTAGKDRTGVVAALLLSLLGV 151 (164)
T ss_dssp --EEEE-SSSSSHHHHHHHHHHHHTT-
T ss_pred CcEEEECCCCCccHHHHHHHHHHHcCC
Confidence 5999999998 478777776654 465
No 111
>KOG0333 consensus U5 snRNP-like RNA helicase subunit [RNA processing and modification]
Probab=29.90 E-value=62 Score=31.93 Aligned_cols=35 Identities=26% Similarity=0.537 Sum_probs=31.4
Q ss_pred CCeEEEEcCCChhHHHHHHHHHHcCCCcEEEcCcch
Q 029506 30 KTDILMYCTGGIRCDVYSTILRQRGFHNLYTLKGGV 65 (192)
Q Consensus 30 ~k~IvlyC~~G~Rs~~Aa~~L~~~Gf~~Vy~L~GGi 65 (192)
+.|||++=+.-.-+..+|..|.+.|| +++.|.||=
T Consensus 517 ~ppiIIFvN~kk~~d~lAk~LeK~g~-~~~tlHg~k 551 (673)
T KOG0333|consen 517 DPPIIIFVNTKKGADALAKILEKAGY-KVTTLHGGK 551 (673)
T ss_pred CCCEEEEEechhhHHHHHHHHhhccc-eEEEeeCCc
Confidence 36899999998899999999999999 699999984
No 112
>PF02302 PTS_IIB: PTS system, Lactose/Cellobiose specific IIB subunit; InterPro: IPR003501 The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. The lactose/cellobiose-specific family are one of four structurally and functionally distinct group IIB PTS system cytoplasmic enzymes. The fold of IIB cellobiose shows similar structure to mammalian tyrosine phosphatases. This signature is often found downstream of IPR003352 from INTERPRO.; GO: 0008982 protein-N(PI)-phosphohistidine-sugar phosphotransferase activity, 0009401 phosphoenolpyruvate-dependent sugar phosphotransferase system; PDB: 1TVM_A 2WY2_D 1IIB_A 2WWV_D 1H9C_A 1E2B_A 2L2Q_A 2KYR_A 3CZC_A 3NBM_A ....
Probab=29.86 E-value=68 Score=22.29 Aligned_cols=25 Identities=24% Similarity=0.553 Sum_probs=16.9
Q ss_pred eEEEEcCCChhHHHHH-HHH----HHcCCC
Q 029506 32 DILMYCTGGIRCDVYS-TIL----RQRGFH 56 (192)
Q Consensus 32 ~IvlyC~~G~Rs~~Aa-~~L----~~~Gf~ 56 (192)
+|++.|.+|+-+-..+ ..| +++|++
T Consensus 1 kIlvvC~~Gi~TS~~~~~~i~~~~~~~gi~ 30 (90)
T PF02302_consen 1 KILVVCGSGIGTSLMVANKIKKALKELGIE 30 (90)
T ss_dssp EEEEEESSSSHHHHHHHHHHHHHHHHTTEC
T ss_pred CEEEECCChHHHHHHHHHHHHHHHHhccCc
Confidence 4899999997655433 444 556864
No 113
>PRK04837 ATP-dependent RNA helicase RhlB; Provisional
Probab=29.22 E-value=80 Score=28.69 Aligned_cols=36 Identities=19% Similarity=0.356 Sum_probs=31.1
Q ss_pred CeEEEEcCCChhHHHHHHHHHHcCCCcEEEcCcchHh
Q 029506 31 TDILMYCTGGIRCDVYSTILRQRGFHNLYTLKGGVSH 67 (192)
Q Consensus 31 k~IvlyC~~G~Rs~~Aa~~L~~~Gf~~Vy~L~GGi~~ 67 (192)
.++|+||.+-..++..+..|.+.|+ ++..+.|++..
T Consensus 256 ~~~lVF~~t~~~~~~l~~~L~~~g~-~v~~lhg~~~~ 291 (423)
T PRK04837 256 DRAIIFANTKHRCEEIWGHLAADGH-RVGLLTGDVAQ 291 (423)
T ss_pred CeEEEEECCHHHHHHHHHHHHhCCC-cEEEecCCCCh
Confidence 5799999999999999999999998 57788888643
No 114
>PF08274 PhnA_Zn_Ribbon: PhnA Zinc-Ribbon ; InterPro: IPR013987 The PhnA protein family includes the uncharacterised Escherichia coli protein PhnA and its homologues. The E. coli phnA gene is part of a large operon associated with alkylphosphonate uptake and carbon-phosphorus bond cleavage []. The protein is not related to the characterised phosphonoacetate hydrolase designated PhnA []. This entry represents the N-terminal domain of PhnA, which is predicted to form a zinc-ribbon.; PDB: 2AKL_A.
Probab=29.07 E-value=23 Score=21.19 Aligned_cols=27 Identities=22% Similarity=0.636 Sum_probs=11.8
Q ss_pred ccccccCCCccccccccccCCCCCCccEEeChhhhhc
Q 029506 114 FATCYICSSQVRELRHRNCANLDCNLLFLCCADCVKN 150 (192)
Q Consensus 114 ~~~C~~C~~~~~~~~~~nC~n~~C~~l~l~C~~C~~~ 150 (192)
+.+|..|++... |.. .-+++|++|...
T Consensus 2 ~p~Cp~C~se~~---y~D-------~~~~vCp~C~~e 28 (30)
T PF08274_consen 2 LPKCPLCGSEYT---YED-------GELLVCPECGHE 28 (30)
T ss_dssp S---TTT--------EE--------SSSEEETTTTEE
T ss_pred CCCCCCCCCcce---ecc-------CCEEeCCccccc
Confidence 468999998764 322 126788888653
No 115
>COG5211 SSU72 RNA polymerase II-interacting protein involved in transcription start site selection [Transcription]
Probab=28.57 E-value=50 Score=27.61 Aligned_cols=30 Identities=13% Similarity=0.317 Sum_probs=24.7
Q ss_pred CeEEEEcCC-ChhHHHHHHHHHHcCCCcEEEc
Q 029506 31 TDILMYCTG-GIRCDVYSTILRQRGFHNLYTL 61 (192)
Q Consensus 31 k~IvlyC~~-G~Rs~~Aa~~L~~~Gf~~Vy~L 61 (192)
-++-+.|++ -.||..+-..|+++|| +|...
T Consensus 7 lk~~v~CAsNqNRSMetH~vL~~aGy-~V~Sf 37 (197)
T COG5211 7 LKLAVTCASNQNRSMETHDVLAKAGY-PVKSF 37 (197)
T ss_pred ceEEeeeccCCCcchHHHHHHHHcCC-ccccc
Confidence 478889976 5899999999999998 46554
No 116
>PRK04023 DNA polymerase II large subunit; Validated
Probab=27.89 E-value=48 Score=34.78 Aligned_cols=44 Identities=20% Similarity=0.479 Sum_probs=34.4
Q ss_pred ccccccCCCccccccccccCCCCCCc---cEEeChhhhhccCCCCChhhhcc
Q 029506 114 FATCYICSSQVRELRHRNCANLDCNL---LFLCCADCVKNLRGCCCLNCTTA 162 (192)
Q Consensus 114 ~~~C~~C~~~~~~~~~~nC~n~~C~~---l~l~C~~C~~~~~~~c~~~C~~~ 162 (192)
.-.|..||..+. ...|. .|.. ....|+.|.......-|+.|...
T Consensus 626 ~RfCpsCG~~t~---~frCP--~CG~~Te~i~fCP~CG~~~~~y~CPKCG~E 672 (1121)
T PRK04023 626 RRKCPSCGKETF---YRRCP--FCGTHTEPVYRCPRCGIEVEEDECEKCGRE 672 (1121)
T ss_pred CccCCCCCCcCC---cccCC--CCCCCCCcceeCccccCcCCCCcCCCCCCC
Confidence 348999999974 34565 6876 58899999998877788999865
No 117
>TIGR01587 cas3_core CRISPR-associated helicase Cas3. This model represents the highly conserved core region of an alignment of Cas3, a protein found in association with CRISPR repeat elements in a broad range of bacteria and archaea. Cas3 appears to be a helicase, with regions found by pfam00270 (DEAD/DEAH box helicase) and pfam00271 (Helicase conserved C-terminal domain). Some but not all members have an N-terminal HD domain region (pfam01966) that is not included within this model.
Probab=27.17 E-value=80 Score=27.64 Aligned_cols=37 Identities=11% Similarity=0.144 Sum_probs=32.0
Q ss_pred CeEEEEcCCChhHHHHHHHHHHcCCC-cEEEcCcchHh
Q 029506 31 TDILMYCTGGIRCDVYSTILRQRGFH-NLYTLKGGVSH 67 (192)
Q Consensus 31 k~IvlyC~~G~Rs~~Aa~~L~~~Gf~-~Vy~L~GGi~~ 67 (192)
++++++|++=..++.++..|++.+.. +|..+.|++..
T Consensus 223 ~~~lVf~~t~~~~~~~~~~L~~~~~~~~~~~~h~~~~~ 260 (358)
T TIGR01587 223 GKIAIIVNTVDRAQEFYQQLKENAPEEEIMLLHSRFTE 260 (358)
T ss_pred CeEEEEECCHHHHHHHHHHHHhhcCCCeEEEEECCCCH
Confidence 68999999999999999999998874 68889998743
No 118
>COG1440 CelA Phosphotransferase system cellobiose-specific component IIB [Carbohydrate transport and metabolism]
Probab=26.69 E-value=76 Score=24.33 Aligned_cols=22 Identities=23% Similarity=0.606 Sum_probs=18.2
Q ss_pred CeEEEEcCCChhHHHHHHHHHH
Q 029506 31 TDILMYCTGGIRCDVYSTILRQ 52 (192)
Q Consensus 31 k~IvlyC~~G~Rs~~Aa~~L~~ 52 (192)
++|+++|..|..+-..+..+++
T Consensus 2 k~IlLvC~aGmSTSlLV~Km~~ 23 (102)
T COG1440 2 KKILLVCAAGMSTSLLVTKMKK 23 (102)
T ss_pred ceEEEEecCCCcHHHHHHHHHH
Confidence 5799999999998877777665
No 119
>PRK07116 flavodoxin; Provisional
Probab=26.42 E-value=39 Score=26.66 Aligned_cols=48 Identities=13% Similarity=0.245 Sum_probs=25.2
Q ss_pred CCCCCCCCeEEEEcCCChhH-HHHHHHHHHc----CCCcEEEcCc-----chHhhhhh
Q 029506 24 ADLDKEKTDILMYCTGGIRC-DVYSTILRQR----GFHNLYTLKG-----GVSHYLEN 71 (192)
Q Consensus 24 ~el~k~~k~IvlyC~~G~Rs-~~Aa~~L~~~----Gf~~Vy~L~G-----Gi~~w~~~ 71 (192)
.+++...++++++++.|... ..+...|++. ++...+.+.| .+..|.+.
T Consensus 100 ~~~~l~~k~v~~f~T~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~wl~~ 157 (160)
T PRK07116 100 ESYDFSGKTVIPFATSGGSGIGNAEKELKKSYPDANWKEGRLLNGGASKEEIKEWINK 157 (160)
T ss_pred HhcCCCCCEEEEEEeCCCCCcCcHHHHHHHHCCcCccccCeeecCCCcHHHHHHHHHH
Confidence 33333347899998865442 3444555543 4444444433 35666543
No 120
>PRK12336 translation initiation factor IF-2 subunit beta; Provisional
Probab=26.34 E-value=36 Score=28.60 Aligned_cols=33 Identities=21% Similarity=0.480 Sum_probs=24.5
Q ss_pred CccccccCCCccccccccccCCCCCCccEEeChhhhhcc
Q 029506 113 PFATCYICSSQVRELRHRNCANLDCNLLFLCCADCVKNL 151 (192)
Q Consensus 113 ~~~~C~~C~~~~~~~~~~nC~n~~C~~l~l~C~~C~~~~ 151 (192)
.+-.|..|++|-..+ .. .=+..+|.|.+|.+..
T Consensus 97 ~yV~C~~C~~pdT~l--~k----~~~~~~l~C~aCGa~~ 129 (201)
T PRK12336 97 EYVICSECGLPDTRL--VK----EDRVLMLRCDACGAHR 129 (201)
T ss_pred heEECCCCCCCCcEE--EE----cCCeEEEEcccCCCCc
Confidence 367999999998754 32 1167799999998754
No 121
>cd02336 ZZ_RSC8 Zinc finger, ZZ type. Zinc finger present in RSC8 and related proteins. RSC8 is a component of the RSC complex, which is closely related to the SWI/SNF complex and is involved in remodeling chromatin structure. The ZZ motif coordinates a zinc ion and most likely participates in ligand binding or molecular scaffolding.
Probab=26.25 E-value=48 Score=21.50 Aligned_cols=32 Identities=19% Similarity=0.544 Sum_probs=21.2
Q ss_pred ccccCCCccccccccccCCCCCCccEEeChhhhhcc
Q 029506 116 TCYICSSQVRELRHRNCANLDCNLLFLCCADCVKNL 151 (192)
Q Consensus 116 ~C~~C~~~~~~~~~~nC~n~~C~~l~l~C~~C~~~~ 151 (192)
.|..||..++..||.|=... -..+|..|-.+.
T Consensus 2 ~C~~Cg~D~t~vryh~~~~~----~~dLC~~CF~~G 33 (45)
T cd02336 2 HCFTCGNDCTRVRYHNLKAK----KYDLCPSCYQEG 33 (45)
T ss_pred cccCCCCccCceEEEecCCC----ccccChHHHhCc
Confidence 58899999987776532211 367777776554
No 122
>cd05566 PTS_IIB_galactitol PTS_IIB_galactitol: subunit IIB of enzyme II (EII) of the galactitol-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In this system, EII is a galactitol-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain that are expressed on three distinct polypeptide chains, in contrast to other PTS sugar transporters. The three genes encoding these subunits (gatA, gatB, and gatC) comprise the gatCBA operon. Galactitol PTS permease takes up exogenous galactitol, releasing the phosphate ester into the cytoplasm in preparation for oxidation and further metabolism via a modified glycolytic pathway called the tagatose-6-phosphate glycolytic pathway. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include galactitol, chitobiose/lichenan, ascorbate, lactose, mannitol, fructose, and
Probab=26.16 E-value=83 Score=22.02 Aligned_cols=25 Identities=24% Similarity=0.578 Sum_probs=16.6
Q ss_pred CeEEEEcCCChhHH-HHHHHHH----HcCC
Q 029506 31 TDILMYCTGGIRCD-VYSTILR----QRGF 55 (192)
Q Consensus 31 k~IvlyC~~G~Rs~-~Aa~~L~----~~Gf 55 (192)
++|++.|.+|..+. .++..|+ +.++
T Consensus 1 ~~ilivC~~G~~tS~~l~~~i~~~~~~~~i 30 (89)
T cd05566 1 KKILVACGTGVATSTVVASKVKELLKENGI 30 (89)
T ss_pred CEEEEECCCCccHHHHHHHHHHHHHHHCCC
Confidence 36999999998543 5554444 4565
No 123
>PF00628 PHD: PHD-finger; InterPro: IPR019787 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents the PHD (homeodomain) zinc finger domain [,], which is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in chromatin-mediated transcriptional regulation. The PHD finger motif is reminiscent of, but distinct from the C3HC4 type RING finger. The function of this domain is not yet known but in analogy with the LIM domain it could be involved in protein-protein interaction and be important for the assembly or activity of multicomponent complexes involved in transcriptional activation or repression. Alternatively, the interactions could be intra-molecular and be important in maintaining the structural integrity of the protein. In similarity to the RING finger and the LIM domain, the PHD finger is thought to bind two zinc ions. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0005515 protein binding; PDB: 3ZVY_A 2LGG_A 3SOW_A 3SOU_B 3ASL_A 3ASK_A 3ZVZ_B 3T6R_A 2LGK_A 3SOX_B ....
Probab=26.15 E-value=52 Score=20.71 Aligned_cols=17 Identities=18% Similarity=0.429 Sum_probs=13.9
Q ss_pred ccEEeChhhhhccCCCC
Q 029506 139 LLFLCCADCVKNLRGCC 155 (192)
Q Consensus 139 ~l~l~C~~C~~~~~~~c 155 (192)
...|+|+.|...++..|
T Consensus 12 ~~~i~C~~C~~~~H~~C 28 (51)
T PF00628_consen 12 GDMIQCDSCNRWYHQEC 28 (51)
T ss_dssp SSEEEBSTTSCEEETTT
T ss_pred CCeEEcCCCChhhCccc
Confidence 46899999999888765
No 124
>PF03853 YjeF_N: YjeF-related protein N-terminus; InterPro: IPR004443 The YjeF N-terminal domains occur either as single proteins or fusions with other domains and are commonly associated with enzymes. In bacteria and archaea, YjeF N-terminal domains are often fused to a YjeF C-terminal domain with high structural homology to the members of a ribokinase-like superfamily (see PDOC00806 from PROSITEDOC)and/or belong to operons that encode enzymes of diverse functions: pyridoxal phosphate biosynthetic protein PdxJ; phosphopanteine-protein transferase; ATP/GTP hydrolase; and pyruvate-formate lyase 1-activating enzyme. In plants, the YjeF N-terminal domain is fused to a C-terminal putative pyridoxamine 5'-phosphate oxidase. In eukaryotes, proteins that consist of (Sm)-FDF-YjeF N-terminal domains may be involved in RNA processing [, ]. The YjeF N-terminal domains represent a novel version of the Rossmann fold, one of the most common protein folds in nature observed in numerous enzyme families, that has acquired a set of catalytic residues and structural features that distinguish them from the conventional dehydrogenases. The YjeF N-terminal domain is comprised of a three-layer alpha-beta-alpha sandwich with a central beta-sheet surrounded by helices. The conservation of the acidic residues in the predicted active site of the YjeF N-terminal domains is reminiscent of the presence of such residues in the active sites of diverse hydrolases [, ].; PDB: 3K5W_A 2O8N_A 2DG2_F 3RNO_A 1JZT_B 3D3K_A 3D3J_A 3RSG_A 3RT9_A 3RRF_A ....
Probab=26.12 E-value=1.3e+02 Score=24.12 Aligned_cols=29 Identities=24% Similarity=0.429 Sum_probs=21.9
Q ss_pred CeEEEEcCCCh---hHHHHHHHHHHcCCCcEEE
Q 029506 31 TDILMYCTGGI---RCDVYSTILRQRGFHNLYT 60 (192)
Q Consensus 31 k~IvlyC~~G~---Rs~~Aa~~L~~~Gf~~Vy~ 60 (192)
++|++.|-.|. ....+++.|.+.|++ |..
T Consensus 26 ~~v~il~G~GnNGgDgl~~AR~L~~~G~~-V~v 57 (169)
T PF03853_consen 26 PRVLILCGPGNNGGDGLVAARHLANRGYN-VTV 57 (169)
T ss_dssp -EEEEEE-SSHHHHHHHHHHHHHHHTTCE-EEE
T ss_pred CeEEEEECCCCChHHHHHHHHHHHHCCCe-EEE
Confidence 68999998875 466899999999995 443
No 125
>PRK11776 ATP-dependent RNA helicase DbpA; Provisional
Probab=25.89 E-value=87 Score=28.76 Aligned_cols=36 Identities=19% Similarity=0.552 Sum_probs=31.5
Q ss_pred CeEEEEcCCChhHHHHHHHHHHcCCCcEEEcCcchHh
Q 029506 31 TDILMYCTGGIRCDVYSTILRQRGFHNLYTLKGGVSH 67 (192)
Q Consensus 31 k~IvlyC~~G~Rs~~Aa~~L~~~Gf~~Vy~L~GGi~~ 67 (192)
.++|+||.+-..++.++..|.+.|+ ++..+.|++..
T Consensus 243 ~~~lVF~~t~~~~~~l~~~L~~~~~-~v~~~hg~~~~ 278 (460)
T PRK11776 243 ESCVVFCNTKKECQEVADALNAQGF-SALALHGDLEQ 278 (460)
T ss_pred CceEEEECCHHHHHHHHHHHHhCCC-cEEEEeCCCCH
Confidence 4799999999999999999999998 57788888754
No 126
>PRK14665 mnmA tRNA-specific 2-thiouridylase MnmA; Provisional
Probab=25.82 E-value=1.2e+02 Score=27.83 Aligned_cols=29 Identities=24% Similarity=0.524 Sum_probs=25.9
Q ss_pred CCCCCeEEEEcCCChhHHHHHHHHHHcCCC
Q 029506 27 DKEKTDILMYCTGGIRCDVYSTILRQRGFH 56 (192)
Q Consensus 27 ~k~~k~IvlyC~~G~Rs~~Aa~~L~~~Gf~ 56 (192)
+++ ++|++-..||.-|..++.+|++.|++
T Consensus 3 ~~~-~kVlValSGGVDSsvaa~LL~~~G~~ 31 (360)
T PRK14665 3 EKN-KRVLLGMSGGTDSSVAAMLLLEAGYE 31 (360)
T ss_pred CCC-CEEEEEEcCCHHHHHHHHHHHHcCCe
Confidence 455 58999999999999999999999985
No 127
>PF03054 tRNA_Me_trans: tRNA methyl transferase; InterPro: IPR004506 tRNA-specific 2-thiouridylase catalyzes the 2-thiolation of uridine at the wobble position (U34) of tRNA, leading to the formation of s(2)U34.; GO: 0016740 transferase activity, 0008033 tRNA processing, 0005737 cytoplasm; PDB: 2DET_A 2DER_A 2DEU_A 2HMA_A.
Probab=25.67 E-value=92 Score=28.61 Aligned_cols=28 Identities=21% Similarity=0.632 Sum_probs=20.9
Q ss_pred CeEEEEcCCChhHHHHHHHHHHcCCCcEE
Q 029506 31 TDILMYCTGGIRCDVYSTILRQRGFHNLY 59 (192)
Q Consensus 31 k~IvlyC~~G~Rs~~Aa~~L~~~Gf~~Vy 59 (192)
++|++-=.||+-|..||.+|+++||+ |.
T Consensus 1 ~kV~vamSGGVDSsvaA~LLk~~G~~-V~ 28 (356)
T PF03054_consen 1 KKVLVAMSGGVDSSVAAALLKEQGYD-VI 28 (356)
T ss_dssp -EEEEE--SSHHHHHHHHHHHHCT-E-EE
T ss_pred CeEEEEccCCHHHHHHHHHHHhhccc-ce
Confidence 36777788999999999999999994 53
No 128
>TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=24.61 E-value=97 Score=28.79 Aligned_cols=35 Identities=14% Similarity=0.356 Sum_probs=30.0
Q ss_pred CeEEEEcCCChhHHHHHHHHHHcCCCcEEEcCcchH
Q 029506 31 TDILMYCTGGIRCDVYSTILRQRGFHNLYTLKGGVS 66 (192)
Q Consensus 31 k~IvlyC~~G~Rs~~Aa~~L~~~Gf~~Vy~L~GGi~ 66 (192)
+..|+||.+-..++.++..|++.|+. +..+.||+.
T Consensus 227 ~~~IIF~~s~~~~e~la~~L~~~g~~-~~~~H~~l~ 261 (470)
T TIGR00614 227 KSGIIYCPSRKKSEQVTASLQNLGIA-AGAYHAGLE 261 (470)
T ss_pred CceEEEECcHHHHHHHHHHHHhcCCC-eeEeeCCCC
Confidence 56799999999999999999999984 666778864
No 129
>smart00653 eIF2B_5 domain present in translation initiation factor eIF2B and eIF5.
Probab=24.57 E-value=44 Score=25.63 Aligned_cols=30 Identities=33% Similarity=0.676 Sum_probs=22.0
Q ss_pred ccccccCCCccccccccccCCCCCCccEEeChhhhh
Q 029506 114 FATCYICSSQVRELRHRNCANLDCNLLFLCCADCVK 149 (192)
Q Consensus 114 ~~~C~~C~~~~~~~~~~nC~n~~C~~l~l~C~~C~~ 149 (192)
+-.|..|++|-..+ .. +=+..++.|++|.+
T Consensus 80 yVlC~~C~spdT~l--~k----~~r~~~l~C~aCGa 109 (110)
T smart00653 80 YVLCPECGSPDTEL--IK----ENRLFFLKCEACGA 109 (110)
T ss_pred cEECCCCCCCCcEE--EE----eCCeEEEEccccCC
Confidence 57899999996643 32 12567899999975
No 130
>PRK11192 ATP-dependent RNA helicase SrmB; Provisional
Probab=24.43 E-value=1.1e+02 Score=27.66 Aligned_cols=36 Identities=22% Similarity=0.337 Sum_probs=31.4
Q ss_pred CeEEEEcCCChhHHHHHHHHHHcCCCcEEEcCcchHh
Q 029506 31 TDILMYCTGGIRCDVYSTILRQRGFHNLYTLKGGVSH 67 (192)
Q Consensus 31 k~IvlyC~~G~Rs~~Aa~~L~~~Gf~~Vy~L~GGi~~ 67 (192)
.++|+||.+-..++.++..|++.|+ .+..+.|++..
T Consensus 246 ~~~lVF~~s~~~~~~l~~~L~~~~~-~~~~l~g~~~~ 281 (434)
T PRK11192 246 TRSIVFVRTRERVHELAGWLRKAGI-NCCYLEGEMVQ 281 (434)
T ss_pred CeEEEEeCChHHHHHHHHHHHhCCC-CEEEecCCCCH
Confidence 5799999999999999999999998 47788888643
No 131
>PF06689 zf-C4_ClpX: ClpX C4-type zinc finger; InterPro: IPR010603 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The ClpX heat shock protein of Escherichia coli is a member of the universally conserved Hsp100 family of proteins, and possesses a putative zinc finger motif of the C4 type []. This presumed zinc binding domain (ZBD) is found at the N terminus of the ClpX protein. ClpX is an ATPase which functions both as a substrate specificity component of the ClpXP protease and as a molecular chaperone. ZBD is a member of the treble clef zinc finger family, a motif known to facilitate protein-ligand, protein-DNA, and protein-protein interactions and forms a constitutive dimer that is essential for the degradation of some, but not all, ClpX substrates []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0016887 ATPase activity, 0046983 protein dimerization activity, 0006200 ATP catabolic process, 0019538 protein metabolic process; PDB: 2DS8_B 2DS6_B 2DS5_A 1OVX_A 2DS7_A.
Probab=24.30 E-value=49 Score=20.82 Aligned_cols=31 Identities=19% Similarity=0.419 Sum_probs=17.6
Q ss_pred ccccCCCccccccccccCCCCCCccEEeChhhhhc
Q 029506 116 TCYICSSQVRELRHRNCANLDCNLLFLCCADCVKN 150 (192)
Q Consensus 116 ~C~~C~~~~~~~~~~nC~n~~C~~l~l~C~~C~~~ 150 (192)
.|..||++.++.+..- +.+ .-...|++|.+.
T Consensus 3 ~CSFCgr~~~~v~~li-~g~---~~~~IC~~Cv~~ 33 (41)
T PF06689_consen 3 RCSFCGRPESEVGRLI-SGP---NGAYICDECVEQ 33 (41)
T ss_dssp B-TTT--BTTTSSSEE-EES----SEEEEHHHHHH
T ss_pred CccCCCCCHHHHhcee-cCC---CCcEECHHHHHH
Confidence 7999999987654221 222 018889999764
No 132
>cd05567 PTS_IIB_mannitol PTS_IIB_mannitol: subunit IIB of enzyme II (EII) of the mannitol-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In this system, EII is a mannitol-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. The IIA, IIB, and IIC domains are expressed from the mtlA gene as a single protein, also known as the mannitol PTS permease, the mtl transporter, or MtlA. MtlA is only functional as a dimer with the dimer contacts occuring between the IIC domains. MtlA takes up exogenous mannitol releasing the phosphate ester into the cytoplasm in preparation for oxidation to fructose-6-phosphate by the NAD-dependent mannitol-P dehydrogenase (MtlD). The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include mannitol, chitobiose/lichenan, ascorbate, lactose, galactitol, fructose, and a s
Probab=24.24 E-value=1e+02 Score=21.85 Aligned_cols=24 Identities=21% Similarity=0.546 Sum_probs=15.6
Q ss_pred eEEEEcCCChhHH-HHH----HHHHHcCC
Q 029506 32 DILMYCTGGIRCD-VYS----TILRQRGF 55 (192)
Q Consensus 32 ~IvlyC~~G~Rs~-~Aa----~~L~~~Gf 55 (192)
+|+++|.+|.-+. .++ +.|.+.|.
T Consensus 2 kilvvCg~G~gtS~ml~~ki~~~~~~~~~ 30 (87)
T cd05567 2 KIVFACDAGMGSSAMGASVLRKKLKKAGL 30 (87)
T ss_pred EEEEECCCCccHHHHHHHHHHHHHHHCCC
Confidence 6999999987544 334 44445565
No 133
>COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis]
Probab=24.01 E-value=93 Score=29.59 Aligned_cols=35 Identities=20% Similarity=0.472 Sum_probs=31.6
Q ss_pred eEEEEcCCChhHHHHHHHHHHcCCCcEEEcCcchHh
Q 029506 32 DILMYCTGGIRCDVYSTILRQRGFHNLYTLKGGVSH 67 (192)
Q Consensus 32 ~IvlyC~~G~Rs~~Aa~~L~~~Gf~~Vy~L~GGi~~ 67 (192)
.+|++|.+-.++..++..|...|| ++..|.|++..
T Consensus 275 ~~IVF~~tk~~~~~l~~~l~~~g~-~~~~lhG~l~q 309 (513)
T COG0513 275 RVIVFVRTKRLVEELAESLRKRGF-KVAALHGDLPQ 309 (513)
T ss_pred eEEEEeCcHHHHHHHHHHHHHCCC-eEEEecCCCCH
Confidence 599999999999999999999998 59999999643
No 134
>TIGR00311 aIF-2beta translation initiation factor aIF-2, beta subunit, putative.
Probab=23.93 E-value=44 Score=26.53 Aligned_cols=31 Identities=16% Similarity=0.493 Sum_probs=22.9
Q ss_pred ccccccCCCccccccccccCCCCCCccEEeChhhhhc
Q 029506 114 FATCYICSSQVRELRHRNCANLDCNLLFLCCADCVKN 150 (192)
Q Consensus 114 ~~~C~~C~~~~~~~~~~nC~n~~C~~l~l~C~~C~~~ 150 (192)
+-.|..|++|-..+ .. .=+..+|.|.+|.+.
T Consensus 97 yVlC~~C~sPdT~l--~k----~~r~~~l~C~ACGa~ 127 (133)
T TIGR00311 97 YVICRECNRPDTRI--IK----EGRVSLLKCEACGAK 127 (133)
T ss_pred eEECCCCCCCCcEE--EE----eCCeEEEecccCCCC
Confidence 67999999998753 32 224568999999875
No 135
>PHA02565 49 recombination endonuclease VII; Provisional
Probab=23.47 E-value=58 Score=26.80 Aligned_cols=35 Identities=17% Similarity=0.259 Sum_probs=22.7
Q ss_pred ccccccCCCccccccccccCCCCCC---------ccEEeChhhhh
Q 029506 114 FATCYICSSQVRELRHRNCANLDCN---------LLFLCCADCVK 149 (192)
Q Consensus 114 ~~~C~~C~~~~~~~~~~nC~n~~C~---------~l~l~C~~C~~ 149 (192)
-+.|..|+.|.+.....++. ..|| ++.|+|..|-.
T Consensus 20 ~G~CaiC~~~l~~~~~~~~v-DHDH~l~g~~TG~VRGLLC~~CN~ 63 (157)
T PHA02565 20 NGICPLCKRELDGDVSKNHL-DHDHELNGPNAGRVRGLLCNLCNA 63 (157)
T ss_pred CCcCCCCCCccCCCcccccc-CCCCCCCCcccccccccCchhhhh
Confidence 57899999986532223333 4455 57778888865
No 136
>PF09889 DUF2116: Uncharacterized protein containing a Zn-ribbon (DUF2116); InterPro: IPR019216 This entry contains various hypothetical prokaryotic proteins whose functions are unknown. They contain a conserved zinc ribbon motif in the N-terminal part and a predicted transmembrane segment in the C-terminal part.
Probab=23.45 E-value=43 Score=23.08 Aligned_cols=13 Identities=15% Similarity=0.621 Sum_probs=10.0
Q ss_pred ccccccCCCcccc
Q 029506 114 FATCYICSSQVRE 126 (192)
Q Consensus 114 ~~~C~~C~~~~~~ 126 (192)
-.+|..||+|...
T Consensus 3 HkHC~~CG~~Ip~ 15 (59)
T PF09889_consen 3 HKHCPVCGKPIPP 15 (59)
T ss_pred CCcCCcCCCcCCc
Confidence 3589999998763
No 137
>PF03833 PolC_DP2: DNA polymerase II large subunit DP2; InterPro: IPR016033 DP2 is the large subunit of a two-subunit novel archaebacterial replicative DNA polymerase first characterised for Pyrococcus furiosus. The structure of DP2 appears to be organised as a ~950 residue component separated from a ~300 residue component by a ~150 residue intein. The other subunit, DP1, has sequence similarity to the eukaryotic DNA polymerase delta small subunit. This entry represents the N-terminal ~950 residue component of DP2.; GO: 0003887 DNA-directed DNA polymerase activity; PDB: 3O59_X.
Probab=23.37 E-value=27 Score=35.82 Aligned_cols=44 Identities=20% Similarity=0.551 Sum_probs=0.0
Q ss_pred ccccccCCCccccccccccCCCCCCcc---EEeChhhhhccCCCCChhhhcc
Q 029506 114 FATCYICSSQVRELRHRNCANLDCNLL---FLCCADCVKNLRGCCCLNCTTA 162 (192)
Q Consensus 114 ~~~C~~C~~~~~~~~~~nC~n~~C~~l---~l~C~~C~~~~~~~c~~~C~~~ 162 (192)
.-+|..||..+- +..|. .|... +..|+.|........|+.|...
T Consensus 655 ~r~Cp~Cg~~t~---~~~Cp--~CG~~T~~~~~Cp~C~~~~~~~~C~~C~~~ 701 (900)
T PF03833_consen 655 RRRCPKCGKETF---YNRCP--ECGSHTEPVYVCPDCGIEVEEDECPKCGRE 701 (900)
T ss_dssp ----------------------------------------------------
T ss_pred cccCcccCCcch---hhcCc--ccCCccccceeccccccccCcccccccccc
Confidence 457999999874 35565 67654 8999999999887788999865
No 138
>PRK09678 DNA-binding transcriptional regulator; Provisional
Probab=23.24 E-value=72 Score=22.82 Aligned_cols=18 Identities=28% Similarity=0.770 Sum_probs=11.8
Q ss_pred cccccCCCCCCccEEeCh
Q 029506 128 RHRNCANLDCNLLFLCCA 145 (192)
Q Consensus 128 ~~~nC~n~~C~~l~l~C~ 145 (192)
+|..|.|..|...|..=+
T Consensus 26 ~Y~qC~N~eCg~tF~t~e 43 (72)
T PRK09678 26 RYHQCQNVNCSATFITYE 43 (72)
T ss_pred eeeecCCCCCCCEEEEEE
Confidence 466777777777665543
No 139
>PF04122 CW_binding_2: Putative cell wall binding repeat 2; InterPro: IPR007253 This repeat is found in multiple tandem copies in proteins including amidase enhancers [] and adhesins [].
Probab=23.00 E-value=1.1e+02 Score=21.77 Aligned_cols=34 Identities=18% Similarity=0.309 Sum_probs=24.2
Q ss_pred CeEEEEcCCChhHHHHHHHHHHcCCCcEEEcCcchHh
Q 029506 31 TDILMYCTGGIRCDVYSTILRQRGFHNLYTLKGGVSH 67 (192)
Q Consensus 31 k~IvlyC~~G~Rs~~Aa~~L~~~Gf~~Vy~L~GGi~~ 67 (192)
.||++.= ..-......+|++++.++|+.+ ||...
T Consensus 51 ~PIll~~--~~l~~~~~~~l~~~~~~~v~ii-Gg~~~ 84 (92)
T PF04122_consen 51 APILLVN--NSLPSSVKAFLKSLNIKKVYII-GGEGA 84 (92)
T ss_pred CeEEEEC--CCCCHHHHHHHHHcCCCEEEEE-CCCCc
Confidence 4666555 4444888888998888899888 76543
No 140
>cd02249 ZZ Zinc finger, ZZ type. Zinc finger present in dystrophin, CBP/p300 and many other proteins. The ZZ motif coordinates one or two zinc ions and most likely participates in ligand binding or molecular scaffolding. Many proteins containing ZZ motifs have other zinc-binding motifs as well, and the majority serve as scaffolds in pathways involving acetyltransferase, protein kinase, or ubiqitin-related activity. ZZ proteins can be grouped into the following functional classes: chromatin modifying, cytoskeletal scaffolding, ubiquitin binding or conjugating, and membrane receptor or ion-channel modifying proteins.
Probab=22.93 E-value=54 Score=20.78 Aligned_cols=31 Identities=26% Similarity=0.667 Sum_probs=18.8
Q ss_pred ccccCCCccccccccccCCCCCCccEEeChhhhhc
Q 029506 116 TCYICSSQVRELRHRNCANLDCNLLFLCCADCVKN 150 (192)
Q Consensus 116 ~C~~C~~~~~~~~~~nC~n~~C~~l~l~C~~C~~~ 150 (192)
.|..|+++....|+ .|. .|.. +-+|.+|..+
T Consensus 2 ~C~~C~~~i~g~r~-~C~--~C~d-~dLC~~Cf~~ 32 (46)
T cd02249 2 SCDGCLKPIVGVRY-HCL--VCED-FDLCSSCYAK 32 (46)
T ss_pred CCcCCCCCCcCCEE-ECC--CCCC-CcCHHHHHCc
Confidence 58889988765433 354 4542 6666666554
No 141
>PRK11057 ATP-dependent DNA helicase RecQ; Provisional
Probab=22.76 E-value=1.1e+02 Score=29.73 Aligned_cols=35 Identities=17% Similarity=0.437 Sum_probs=30.7
Q ss_pred CeEEEEcCCChhHHHHHHHHHHcCCCcEEEcCcchH
Q 029506 31 TDILMYCTGGIRCDVYSTILRQRGFHNLYTLKGGVS 66 (192)
Q Consensus 31 k~IvlyC~~G~Rs~~Aa~~L~~~Gf~~Vy~L~GGi~ 66 (192)
++.|+||.+=..++.++..|++.|+ .+..+.||+.
T Consensus 237 ~~~IIFc~tr~~~e~la~~L~~~g~-~v~~~Ha~l~ 271 (607)
T PRK11057 237 KSGIIYCNSRAKVEDTAARLQSRGI-SAAAYHAGLD 271 (607)
T ss_pred CCEEEEECcHHHHHHHHHHHHhCCC-CEEEecCCCC
Confidence 5899999999999999999999998 4777888864
No 142
>PLN03050 pyridoxine (pyridoxamine) 5'-phosphate oxidase; Provisional
Probab=22.73 E-value=1.3e+02 Score=26.00 Aligned_cols=26 Identities=23% Similarity=0.342 Sum_probs=21.8
Q ss_pred CeEEEEcCC---ChhHHHHHHHHHHcCCC
Q 029506 31 TDILMYCTG---GIRCDVYSTILRQRGFH 56 (192)
Q Consensus 31 k~IvlyC~~---G~Rs~~Aa~~L~~~Gf~ 56 (192)
++|++.|-. |.....+|+.|.+.||+
T Consensus 61 ~~V~VlcG~GNNGGDGlv~AR~L~~~G~~ 89 (246)
T PLN03050 61 PRVLLVCGPGNNGGDGLVAARHLAHFGYE 89 (246)
T ss_pred CeEEEEECCCCCchhHHHHHHHHHHCCCe
Confidence 579999965 45788999999999995
No 143
>PRK10590 ATP-dependent RNA helicase RhlE; Provisional
Probab=22.51 E-value=1.1e+02 Score=28.32 Aligned_cols=36 Identities=14% Similarity=0.281 Sum_probs=30.8
Q ss_pred CeEEEEcCCChhHHHHHHHHHHcCCCcEEEcCcchHh
Q 029506 31 TDILMYCTGGIRCDVYSTILRQRGFHNLYTLKGGVSH 67 (192)
Q Consensus 31 k~IvlyC~~G~Rs~~Aa~~L~~~Gf~~Vy~L~GGi~~ 67 (192)
+++|+||.+-..++.++..|.+.|+ ++..+.|++..
T Consensus 246 ~~~lVF~~t~~~~~~l~~~L~~~g~-~~~~lhg~~~~ 281 (456)
T PRK10590 246 QQVLVFTRTKHGANHLAEQLNKDGI-RSAAIHGNKSQ 281 (456)
T ss_pred CcEEEEcCcHHHHHHHHHHHHHCCC-CEEEEECCCCH
Confidence 5799999999999999999999998 47778888643
No 144
>KOG0330 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=21.90 E-value=1.3e+02 Score=28.76 Aligned_cols=39 Identities=21% Similarity=0.456 Sum_probs=33.5
Q ss_pred CeEEEEcCCChhHHHHHHHHHHcCCCcEEEcCcchHhhhh
Q 029506 31 TDILMYCTGGIRCDVYSTILRQRGFHNLYTLKGGVSHYLE 70 (192)
Q Consensus 31 k~IvlyC~~G~Rs~~Aa~~L~~~Gf~~Vy~L~GGi~~w~~ 70 (192)
.++|++|++-.-+...+-+|+..||. ...|.|-+..-.+
T Consensus 301 ~s~iVF~~t~~tt~~la~~L~~lg~~-a~~LhGqmsq~~R 339 (476)
T KOG0330|consen 301 NSVIVFCNTCNTTRFLALLLRNLGFQ-AIPLHGQMSQSKR 339 (476)
T ss_pred CcEEEEEeccchHHHHHHHHHhcCcc-eecccchhhHHHH
Confidence 58999999999999999999999995 6689887755444
No 145
>TIGR02189 GlrX-like_plant Glutaredoxin-like family. This family of glutaredoxin-like proteins is aparrently limited to plants. Multiple isoforms are found in A. thaliana and O.sativa.
Probab=21.83 E-value=3.2e+02 Score=19.83 Aligned_cols=33 Identities=12% Similarity=0.365 Sum_probs=26.4
Q ss_pred CeEEEEcCCC-hhHHHHHHHHHHcCCC-cEEEcCc
Q 029506 31 TDILMYCTGG-IRCDVYSTILRQRGFH-NLYTLKG 63 (192)
Q Consensus 31 k~IvlyC~~G-~Rs~~Aa~~L~~~Gf~-~Vy~L~G 63 (192)
.+|+||-+++ .-|.+|-++|.++|.. .++++.-
T Consensus 8 ~~Vvvysk~~Cp~C~~ak~~L~~~~i~~~~vdid~ 42 (99)
T TIGR02189 8 KAVVIFSRSSCCMCHVVKRLLLTLGVNPAVHEIDK 42 (99)
T ss_pred CCEEEEECCCCHHHHHHHHHHHHcCCCCEEEEcCC
Confidence 5899999887 6699999999999864 4667753
No 146
>PLN02727 NAD kinase
Probab=21.50 E-value=80 Score=32.95 Aligned_cols=22 Identities=14% Similarity=0.149 Sum_probs=17.1
Q ss_pred CeEEEEcCCChh--HHHHHHHHHH
Q 029506 31 TDILMYCTGGIR--CDVYSTILRQ 52 (192)
Q Consensus 31 k~IvlyC~~G~R--s~~Aa~~L~~ 52 (192)
+||++||.+|.| ...+|.||..
T Consensus 342 kPVLvHCKSGarRAGamvA~yl~~ 365 (986)
T PLN02727 342 KPIYLHSKEGVWRTSAMVSRWKQY 365 (986)
T ss_pred CCEEEECCCCCchHHHHHHHHHHH
Confidence 799999999994 3356777764
No 147
>PF12146 Hydrolase_4: Putative lysophospholipase; InterPro: IPR022742 This domain is found in bacteria and eukaryotes and is approximately 110 amino acids in length. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins.
Probab=21.46 E-value=2.1e+02 Score=20.07 Aligned_cols=30 Identities=13% Similarity=0.352 Sum_probs=22.7
Q ss_pred CeEEEEcCCC----hhHHHHHHHHHHcCCCcEEEc
Q 029506 31 TDILMYCTGG----IRCDVYSTILRQRGFHNLYTL 61 (192)
Q Consensus 31 k~IvlyC~~G----~Rs~~Aa~~L~~~Gf~~Vy~L 61 (192)
|.+|+++.+- .|-...+..|.+.|| .|+-+
T Consensus 16 k~~v~i~HG~~eh~~ry~~~a~~L~~~G~-~V~~~ 49 (79)
T PF12146_consen 16 KAVVVIVHGFGEHSGRYAHLAEFLAEQGY-AVFAY 49 (79)
T ss_pred CEEEEEeCCcHHHHHHHHHHHHHHHhCCC-EEEEE
Confidence 6789988764 466678899999999 46644
No 148
>cd02066 GRX_family Glutaredoxin (GRX) family; composed of GRX, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known including human GRX1 and GRX2, as well as E. coli GRX1 and GRX3, which
Probab=21.31 E-value=1.6e+02 Score=18.48 Aligned_cols=31 Identities=10% Similarity=0.283 Sum_probs=22.8
Q ss_pred eEEEEcCCC-hhHHHHHHHHHHcCCC-cEEEcC
Q 029506 32 DILMYCTGG-IRCDVYSTILRQRGFH-NLYTLK 62 (192)
Q Consensus 32 ~IvlyC~~G-~Rs~~Aa~~L~~~Gf~-~Vy~L~ 62 (192)
||++|.+.+ ..|.++-.+|.++|.. ...++.
T Consensus 1 ~v~ly~~~~Cp~C~~~~~~L~~~~i~~~~~di~ 33 (72)
T cd02066 1 KVVVFSKSTCPYCKRAKRLLESLGIEFEEIDIL 33 (72)
T ss_pred CEEEEECCCCHHHHHHHHHHHHcCCcEEEEECC
Confidence 578888655 7799999999999864 233454
No 149
>PRK01297 ATP-dependent RNA helicase RhlB; Provisional
Probab=21.25 E-value=99 Score=28.62 Aligned_cols=39 Identities=13% Similarity=0.198 Sum_probs=32.6
Q ss_pred CeEEEEcCCChhHHHHHHHHHHcCCCcEEEcCcchHhhhh
Q 029506 31 TDILMYCTGGIRCDVYSTILRQRGFHNLYTLKGGVSHYLE 70 (192)
Q Consensus 31 k~IvlyC~~G~Rs~~Aa~~L~~~Gf~~Vy~L~GGi~~w~~ 70 (192)
+++|+||.+-..++.++.+|.+.|+. +..+.|++..-.+
T Consensus 336 ~~~IVF~~s~~~~~~l~~~L~~~~~~-~~~~~g~~~~~~R 374 (475)
T PRK01297 336 ERVMVFANRKDEVRRIEERLVKDGIN-AAQLSGDVPQHKR 374 (475)
T ss_pred CeEEEEeCCHHHHHHHHHHHHHcCCC-EEEEECCCCHHHH
Confidence 47999999999999999999999984 7778888765444
No 150
>PRK03988 translation initiation factor IF-2 subunit beta; Validated
Probab=21.07 E-value=56 Score=26.11 Aligned_cols=31 Identities=23% Similarity=0.528 Sum_probs=23.5
Q ss_pred ccccccCCCccccccccccCCCCCCccEEeChhhhhc
Q 029506 114 FATCYICSSQVRELRHRNCANLDCNLLFLCCADCVKN 150 (192)
Q Consensus 114 ~~~C~~C~~~~~~~~~~nC~n~~C~~l~l~C~~C~~~ 150 (192)
+-.|..|++|-..+ +. .=+..+|.|.+|.+.
T Consensus 102 yVlC~~C~spdT~l--~k----~~r~~~l~C~ACGa~ 132 (138)
T PRK03988 102 YVICPECGSPDTKL--IK----EGRIWVLKCEACGAE 132 (138)
T ss_pred cEECCCCCCCCcEE--EE----cCCeEEEEcccCCCC
Confidence 67899999997653 32 234679999999875
No 151
>PF14952 zf-tcix: Putative treble-clef, zinc-finger, Zn-binding
Probab=20.57 E-value=61 Score=21.22 Aligned_cols=28 Identities=25% Similarity=0.556 Sum_probs=20.6
Q ss_pred CccccccCCCccccccccccCCCCCCccE
Q 029506 113 PFATCYICSSQVRELRHRNCANLDCNLLF 141 (192)
Q Consensus 113 ~~~~C~~C~~~~~~~~~~nC~n~~C~~l~ 141 (192)
-+-+|..||.--.. |-..|.|..|...+
T Consensus 10 GirkCp~CGt~NG~-R~~~CKN~~C~~~~ 37 (44)
T PF14952_consen 10 GIRKCPKCGTYNGT-RGLSCKNKSCPQVF 37 (44)
T ss_pred ccccCCcCcCccCc-ccccccCCccchhh
Confidence 36799999987654 55679998886543
No 152
>PRK04537 ATP-dependent RNA helicase RhlB; Provisional
Probab=20.34 E-value=1.3e+02 Score=29.13 Aligned_cols=35 Identities=14% Similarity=0.328 Sum_probs=31.0
Q ss_pred CeEEEEcCCChhHHHHHHHHHHcCCCcEEEcCcchH
Q 029506 31 TDILMYCTGGIRCDVYSTILRQRGFHNLYTLKGGVS 66 (192)
Q Consensus 31 k~IvlyC~~G~Rs~~Aa~~L~~~Gf~~Vy~L~GGi~ 66 (192)
+++|+||.+-..++.++..|.+.|+ ++..|.|++.
T Consensus 258 ~k~LVF~nt~~~ae~l~~~L~~~g~-~v~~lhg~l~ 292 (572)
T PRK04537 258 ARTMVFVNTKAFVERVARTLERHGY-RVGVLSGDVP 292 (572)
T ss_pred CcEEEEeCCHHHHHHHHHHHHHcCC-CEEEEeCCCC
Confidence 5899999999999999999999998 5888888854
No 153
>COG5254 ARV1 Predicted membrane protein [Function unknown]
Probab=20.15 E-value=42 Score=29.02 Aligned_cols=33 Identities=21% Similarity=0.517 Sum_probs=25.1
Q ss_pred ccccCCCccccccccccCCCCCCccEEeChhhhhcc
Q 029506 116 TCYICSSQVRELRHRNCANLDCNLLFLCCADCVKNL 151 (192)
Q Consensus 116 ~C~~C~~~~~~~~~~nC~n~~C~~l~l~C~~C~~~~ 151 (192)
.|..||.|.|.. |. .++.=|.+.-.|+.|.++.
T Consensus 2 vCIeCg~~vdsL-yt--~ysts~iqls~Cp~C~~~~ 34 (239)
T COG5254 2 VCIECGSRVDSL-YT--RYSTSAIQLSRCPSCNRKM 34 (239)
T ss_pred eeeEcCCcccee-ee--eccCcceehhcCchHHHHH
Confidence 599999999864 43 2345678889999998765
No 154
>KOG0353 consensus ATP-dependent DNA helicase [General function prediction only]
Probab=20.12 E-value=1.6e+02 Score=28.23 Aligned_cols=63 Identities=24% Similarity=0.430 Sum_probs=39.5
Q ss_pred CeEEEEcCCChhHHHHHHHHHHcCCCcEEEcCcchHhhhhhcCC----ce-eeccceEEeeeccCCCCCCCCc
Q 029506 31 TDILMYCTGGIRCDVYSTILRQRGFHNLYTLKGGVSHYLENEGP----VE-WVGNLFVFDSRLSLPPSAYKPD 98 (192)
Q Consensus 31 k~IvlyC~~G~Rs~~Aa~~L~~~Gf~~Vy~L~GGi~~w~~~~~p----~~-~~g~~fVFD~R~~v~~~~~~~~ 98 (192)
+.=|+||-+-.-|++++..|+.+|.. .|.+.++.+...- .. ..|+..|+=.-+++.-+-++|+
T Consensus 318 qsgiiyc~sq~d~ekva~alkn~gi~-----a~~yha~lep~dks~~hq~w~a~eiqvivatvafgmgidkpd 385 (695)
T KOG0353|consen 318 QSGIIYCFSQKDCEKVAKALKNHGIH-----AGAYHANLEPEDKSGAHQGWIAGEIQVIVATVAFGMGIDKPD 385 (695)
T ss_pred CcceEEEeccccHHHHHHHHHhcCcc-----ccccccccCccccccccccccccceEEEEEEeeecccCCCCC
Confidence 57799999999999999999999974 2334444432211 11 2366666655555544444443
Done!