Query 029507
Match_columns 192
No_of_seqs 229 out of 1131
Neff 4.5
Searched_HMMs 29240
Date Mon Mar 25 23:09:27 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029507.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/029507hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1gcc_A Ethylene responsive ele 99.9 1.9E-25 6.4E-30 156.9 6.5 61 6-66 1-62 (63)
2 3igm_B PF14_0633 protein; AP2 93.7 0.063 2.1E-06 38.9 3.8 25 2-26 2-27 (77)
3 1z1b_A Integrase; protein-DNA 84.8 1 3.5E-05 37.1 4.6 42 9-54 14-55 (356)
4 1u3e_M HNH homing endonuclease 78.4 0.33 1.1E-05 38.3 -0.6 38 8-48 109-146 (174)
5 3jtz_A Integrase; four strande 78.3 4.7 0.00016 28.8 5.6 43 12-54 29-75 (88)
6 3ju0_A Phage integrase; four s 65.5 11 0.00038 27.9 5.2 43 12-54 29-75 (108)
7 1x60_A Sporulation-specific N- 45.9 14 0.00049 24.7 2.7 33 20-52 36-68 (79)
8 1uta_A FTSN, MSGA, cell divisi 45.8 26 0.00089 23.7 4.1 33 20-52 36-68 (81)
9 4h62_V Mediator of RNA polymer 33.0 18 0.00061 21.4 1.3 10 169-178 11-20 (31)
10 2o5h_A Hypothetical protein; a 31.5 20 0.00068 28.3 1.7 16 170-185 57-72 (136)
11 2ftc_I Mitochondrial ribosomal 31.1 65 0.0022 24.3 4.5 36 19-56 80-115 (118)
12 1veh_A NIFU-like protein hirip 29.7 21 0.00072 25.9 1.5 25 162-186 8-42 (92)
13 2bn8_A CEDA, cell division act 26.8 33 0.0011 24.8 2.0 39 6-47 38-76 (87)
14 1b69_A Protein (integrase); in 26.4 53 0.0018 22.9 3.0 23 7-29 11-33 (69)
15 1l1s_A Hypothetical protein MT 26.2 18 0.00063 25.8 0.6 22 165-186 52-74 (113)
16 2pd2_A Hypothetical protein ST 23.1 23 0.00078 24.8 0.6 21 166-186 48-69 (108)
17 1p68_A De novo designed protei 22.4 19 0.00066 26.3 0.1 15 163-177 80-94 (102)
No 1
>1gcc_A Ethylene responsive element binding factor 1; transcription factor, protein-DNA complex, ethylene inducible; HET: DNA; NMR {Arabidopsis thaliana} SCOP: d.10.1.2 PDB: 2gcc_A 3gcc_A
Probab=99.92 E-value=1.9e-25 Score=156.87 Aligned_cols=61 Identities=62% Similarity=1.012 Sum_probs=57.1
Q ss_pred CceeeeEeCCCCeEEEEEeeCCC-CcEEeccCCCCHHHHHHHHHHHHHHhcCCCCCCCCCCC
Q 029507 6 QRYRGVRQRHWGSWVSEIRHPLL-KTRIWLGTFETAEDAARAYDEAARLMCGPRARTNFPYN 66 (192)
Q Consensus 6 S~YRGVr~r~~GKW~AeIr~~~~-kkri~LGtFdT~EEAA~AYD~AA~~~~G~~A~~NFP~s 66 (192)
.+||||++++||||+|+|+++.+ ++++|||+|+|+||||+|||.|+++++|.++.+|||.+
T Consensus 1 ~~yrGV~~r~~gkw~A~I~~~~~~g~r~~LGtf~T~eeAA~AyD~Aa~~~~G~~a~~NFp~~ 62 (63)
T 1gcc_A 1 KHYRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDRAAFRMRGSRALLNFPLR 62 (63)
T ss_dssp CCCTTEEEETTTEEEEEEEETTTTSEEEEEEEESSHHHHHHHHHHHHHHHHSSCCCCSSCTT
T ss_pred CCcccEeeCCCCcEEEEEccccCCCeEEEeeeCCCHHHHHHHHHHHHHHhcCcccccCCCCc
Confidence 37999998889999999999864 68999999999999999999999999999999999975
No 2
>3igm_B PF14_0633 protein; AP2 domain, specific transcription FA protein-DNA complex, transcription-DNA complex; 2.20A {Plasmodium falciparum}
Probab=93.70 E-value=0.063 Score=38.92 Aligned_cols=25 Identities=16% Similarity=0.365 Sum_probs=20.1
Q ss_pred CCCCCceeee-EeCCCCeEEEEEeeC
Q 029507 2 ARPQQRYRGV-RQRHWGSWVSEIRHP 26 (192)
Q Consensus 2 ar~sS~YRGV-r~r~~GKW~AeIr~~ 26 (192)
+..+|+|+|| |..+.+.|+|.-.++
T Consensus 2 ~~~~Sg~pGVsw~kR~~~WlA~W~e~ 27 (77)
T 3igm_B 2 SHMSSGYPGVSWNKRMCAWLAFFYDG 27 (77)
T ss_dssp --CCSSSTTEEEETTTTEEEEEEEET
T ss_pred CCCCCCCCcEEeecCCceEEEEEecC
Confidence 3578999999 556689999999987
No 3
>1z1b_A Integrase; protein-DNA complex, DNA binding protein/DNA complex; HET: PTR; 3.80A {Enterobacteria phage lambda} SCOP: d.10.1.4 d.163.1.1 PDB: 1z1g_A 1kjk_A 2wcc_3*
Probab=84.79 E-value=1 Score=37.11 Aligned_cols=42 Identities=14% Similarity=0.025 Sum_probs=31.4
Q ss_pred eeeEeCCCCeEEEEEeeCCCCcEEeccCCCCHHHHHHHHHHHHHHh
Q 029507 9 RGVRQRHWGSWVSEIRHPLLKTRIWLGTFETAEDAARAYDEAARLM 54 (192)
Q Consensus 9 RGVr~r~~GKW~AeIr~~~~kkri~LGtFdT~EEAA~AYD~AA~~~ 54 (192)
.||++++.|.|..+.... |+++.+|. |..||..+..++...+
T Consensus 14 ~~v~~~~~g~~~~r~~~~--gk~~~~g~--t~~eA~~~a~~~~~~~ 55 (356)
T 1z1b_A 14 PNLYIRNNGYYCYRDPRT--GKEFGLGR--DRRIAITEAIQANIEL 55 (356)
T ss_dssp TTEEEETTTEEEEECTTT--CCEEEEES--CHHHHHHHHHHHHHHH
T ss_pred ccceecCCCeEEEEeecC--CeEEECCC--CHHHHHHHHHHHHHHH
Confidence 378777789998876544 78899996 8888887766655444
No 4
>1u3e_M HNH homing endonuclease; HNH catalytic motif, helix-turn-helix DNA binding domain, PR complex, DNA binding protein-DNA complex; 2.92A {Bacillus phage SPO1} SCOP: d.4.1.3 d.285.1.1
Probab=78.36 E-value=0.33 Score=38.31 Aligned_cols=38 Identities=5% Similarity=-0.098 Sum_probs=27.9
Q ss_pred eeeeEeCCCCeEEEEEeeCCCCcEEeccCCCCHHHHHHHHH
Q 029507 8 YRGVRQRHWGSWVSEIRHPLLKTRIWLGTFETAEDAARAYD 48 (192)
Q Consensus 8 YRGVr~r~~GKW~AeIr~~~~kkri~LGtFdT~EEAA~AYD 48 (192)
++||.....++|.+.|... +.++||.|+|.+|||++|.
T Consensus 109 ~~g~~~~~~~k~~~vi~~~---~~~~~~~f~s~~eAa~~~G 146 (174)
T 1u3e_M 109 SKAQQIAKIKNQKPIIVIS---PDGIEKEYPSTKCACEELG 146 (174)
T ss_dssp HHHHHHHHHHTCCCEEEEC---TTSCEEEESCHHHHHHHHT
T ss_pred eeeeeeccCCCCceEEEEc---CCceEEeeCCHHHHHHHHC
Confidence 3455322245688888876 4567999999999999964
No 5
>3jtz_A Integrase; four stranded beta-sheet, DNA binding protein; 1.30A {Yersinia pestis} PDB: 3rmp_A
Probab=78.28 E-value=4.7 Score=28.82 Aligned_cols=43 Identities=21% Similarity=0.366 Sum_probs=32.7
Q ss_pred EeCCCC--eEEEEEeeCCCCcEEeccCCC--CHHHHHHHHHHHHHHh
Q 029507 12 RQRHWG--SWVSEIRHPLLKTRIWLGTFE--TAEDAARAYDEAARLM 54 (192)
Q Consensus 12 r~r~~G--KW~AeIr~~~~kkri~LGtFd--T~EEAA~AYD~AA~~~ 54 (192)
+-.+.| .|+-+.+.+.+.+++-||.|. |..+|....+++...+
T Consensus 29 ~V~psG~K~w~~ryr~~Gk~~~~~LG~yp~~sL~~AR~~a~~~r~~l 75 (88)
T 3jtz_A 29 LVKPGGSRHWYLKYRISGKESRIALGAYPAISLSDARQQREGIRKML 75 (88)
T ss_dssp EECTTSCEEEEEEEEETTEEEEEEEEETTTSCHHHHHHHHHHHHHHH
T ss_pred EEecCCCEEEEEEEEeCCeEEEEEeECCCCCCHHHHHHHHHHHHHHH
Confidence 445544 499999988666889999997 5888888777766655
No 6
>3ju0_A Phage integrase; four stranded beta-sheet, DNA binding protein; 1.60A {Pectobacterium atrosepticum}
Probab=65.54 E-value=11 Score=27.89 Aligned_cols=43 Identities=26% Similarity=0.355 Sum_probs=32.0
Q ss_pred EeCCCC--eEEEEEeeCCCCcEEeccCCC--CHHHHHHHHHHHHHHh
Q 029507 12 RQRHWG--SWVSEIRHPLLKTRIWLGTFE--TAEDAARAYDEAARLM 54 (192)
Q Consensus 12 r~r~~G--KW~AeIr~~~~kkri~LGtFd--T~EEAA~AYD~AA~~~ 54 (192)
+-.+.| .|+-+.+.+.+.+++-||.|. |..+|....+++...+
T Consensus 29 ~V~psG~K~w~~rYr~~GK~~~~~LG~yp~~SLa~AR~~a~~~r~~l 75 (108)
T 3ju0_A 29 LVHPNGSKYWRLSYRFEKKQRLLALGVYPAVSLADARQRRDEAKKLL 75 (108)
T ss_dssp EECTTSCEEEEEEEEETTEEEEEEEEEETTSCHHHHHHHHHHHHHHH
T ss_pred EEEcCCCEEEEEEEEEcCceEEEecCCCCCCCHHHHHHHHHHHHHHH
Confidence 445544 499999888666889999997 5888887777666655
No 7
>1x60_A Sporulation-specific N-acetylmuramoyl-L-alanine amidase; CWLC, CWLCR, peptidoglycan, cell WALL lytic amidase, tandem repeats, hydrolase; NMR {Bacillus subtilis}
Probab=45.89 E-value=14 Score=24.69 Aligned_cols=33 Identities=15% Similarity=0.101 Sum_probs=23.2
Q ss_pred EEEEeeCCCCcEEeccCCCCHHHHHHHHHHHHH
Q 029507 20 VSEIRHPLLKTRIWLGTFETAEDAARAYDEAAR 52 (192)
Q Consensus 20 ~AeIr~~~~kkri~LGtFdT~EEAA~AYD~AA~ 52 (192)
.+.|.....--|+++|.|.+.++|..+-++...
T Consensus 36 ~~~i~~~~~~yRV~vGpf~~~~~A~~~~~~L~~ 68 (79)
T 1x60_A 36 DSIVLLKDGLYKVQIGAFSSKDNADTLAARAKN 68 (79)
T ss_dssp CEEEEEETTEEEEEEEEESSHHHHHHHHHHHHH
T ss_pred CeEEecCCcEEEEEECCcCCHHHHHHHHHHHHH
Confidence 344444333468999999999999888765544
No 8
>1uta_A FTSN, MSGA, cell division protein FTSN; bacterial cell division protein, RNP domain, transmembrane, inner membrane, repeat; NMR {Escherichia coli} SCOP: d.58.52.1
Probab=45.77 E-value=26 Score=23.70 Aligned_cols=33 Identities=18% Similarity=0.152 Sum_probs=24.3
Q ss_pred EEEEeeCCCCcEEeccCCCCHHHHHHHHHHHHH
Q 029507 20 VSEIRHPLLKTRIWLGTFETAEDAARAYDEAAR 52 (192)
Q Consensus 20 ~AeIr~~~~kkri~LGtFdT~EEAA~AYD~AA~ 52 (192)
.+.|.....--|+.+|.|.+.++|..+-++...
T Consensus 36 ~a~i~~~~~~yRV~vGpf~s~~~A~~~~~~L~~ 68 (81)
T 1uta_A 36 DSKITTNNGWNRVVIGPVKGKENADSTLNRLKM 68 (81)
T ss_dssp CEEEEECSSSEEEEESSCBTTTHHHHHHHHHHH
T ss_pred CeEEEeCCcEEEEEECCcCCHHHHHHHHHHHHH
Confidence 455554444579999999999999888766554
No 9
>4h62_V Mediator of RNA polymerase II transcription subun; mediator complex, nucleus; HET: MES; 3.00A {Saccharomyces cerevisiae}
Probab=33.03 E-value=18 Score=21.45 Aligned_cols=10 Identities=70% Similarity=0.886 Sum_probs=6.9
Q ss_pred HHHHHHHhhc
Q 029507 169 EQMIEELLDY 178 (192)
Q Consensus 169 ~qmi~ell~~ 178 (192)
|.-||||||.
T Consensus 11 ekqieelldn 20 (31)
T 4h62_V 11 EKQIEELLDN 20 (31)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 4457888874
No 10
>2o5h_A Hypothetical protein; alpha-beta, structural genomics, PSI-2, protein structure in midwest center for structural genomics, MCSG; 1.90A {Neisseria meningitidis} SCOP: d.363.1.1
Probab=31.47 E-value=20 Score=28.30 Aligned_cols=16 Identities=38% Similarity=0.534 Sum_probs=14.9
Q ss_pred HHHHHHhhcCCceeee
Q 029507 170 QMIEELLDYGSLELCS 185 (192)
Q Consensus 170 qmi~ell~~~s~e~~~ 185 (192)
.+|++|||.|-|.||.
T Consensus 57 ~ll~kLL~eG~iKLa~ 72 (136)
T 2o5h_A 57 ILFKELLRRGHLKLQR 72 (136)
T ss_dssp HHHHHHHHTTSEEEEE
T ss_pred HHHHHHHhCCcEEecC
Confidence 5899999999999996
No 11
>2ftc_I Mitochondrial ribosomal protein L16, 39S ribosomal protein L13, mitochondrial; mitochondrial ribosome, large ribosomal subunit, ribosomal R ribosome; 12.10A {Bos taurus} PDB: 3iy9_I
Probab=31.14 E-value=65 Score=24.27 Aligned_cols=36 Identities=14% Similarity=0.137 Sum_probs=29.2
Q ss_pred EEEEEeeCCCCcEEeccCCCCHHHHHHHHHHHHHHhcC
Q 029507 19 WVSEIRHPLLKTRIWLGTFETAEDAARAYDEAARLMCG 56 (192)
Q Consensus 19 W~AeIr~~~~kkri~LGtFdT~EEAA~AYD~AA~~~~G 56 (192)
|+|.|... ..-+-++...+++.|..|...|+.+|=+
T Consensus 80 wva~Vk~G--~ilfEi~g~~~~~~a~eAlr~a~~KlP~ 115 (118)
T 2ftc_I 80 YVTPVKAG--RLVVEMGGRCEFEEVQGFLDQVAHKLPF 115 (118)
T ss_pred EEEEECCC--CEEEEEeccCCHHHHHHHHHHHHhhCCC
Confidence 99999865 5556666668899999999999988743
No 12
>1veh_A NIFU-like protein hirip5; structural genomics, mouse cDNA, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.52.8.1
Probab=29.67 E-value=21 Score=25.94 Aligned_cols=25 Identities=40% Similarity=0.539 Sum_probs=18.6
Q ss_pred CchhHHHHHHHHHHhhc----------CCceeeec
Q 029507 162 PLEDDHIEQMIEELLDY----------GSLELCSV 186 (192)
Q Consensus 162 ~le~~~i~qmi~ell~~----------~s~e~~~~ 186 (192)
.-+|+-+.++|+++|+. |.|||..+
T Consensus 8 ~~~d~~~~~~I~~~L~~~IRP~L~~dGGdvelv~v 42 (92)
T 1veh_A 8 SEEDDEVVAMIKELLDTRIRPTVQEDGGDVIYRGF 42 (92)
T ss_dssp CSSCCHHHHHHHHHHHHTTHHHHHHHSCCCCEEEE
T ss_pred CCCchHHHHHHHHHHHHHhhHHHHhcCCeEEEEEE
Confidence 33566778888888865 79998765
No 13
>2bn8_A CEDA, cell division activator CEDA; cell division activator protein, cell cycle protein; NMR {Escherichia coli} PDB: 2d35_A
Probab=26.84 E-value=33 Score=24.76 Aligned_cols=39 Identities=21% Similarity=0.251 Sum_probs=27.2
Q ss_pred CceeeeEeCCCCeEEEEEeeCCCCcEEeccCCCCHHHHHHHH
Q 029507 6 QRYRGVRQRHWGSWVSEIRHPLLKTRIWLGTFETAEDAARAY 47 (192)
Q Consensus 6 S~YRGVr~r~~GKW~AeIr~~~~kkri~LGtFdT~EEAA~AY 47 (192)
-+||-||.-+ |||+|.+... ..-..--.|..+|.|-+--
T Consensus 38 d~frdvw~lr-gkyvafvl~g--e~frrspafsvpesaqrwa 76 (87)
T 2bn8_A 38 DSFRDVWMLR-GKYVAFVLMG--ESFLRSPAFTVPESAQRWA 76 (87)
T ss_dssp TTCTTEEEET-TEEEEBCCSS--SCCCBCCCBSSHHHHHHHH
T ss_pred ccchhheeec-cceEEEEEec--hhhccCCccCCcHHHHHHH
Confidence 4789998765 9999998765 2222235688888777653
No 14
>1b69_A Protein (integrase); integrase, DNA binding, transposition, complex, beta-sheet recognition; HET: DNA; NMR {Enterococcus faecalis} SCOP: d.10.1.1 PDB: 1tn9_A* 1bb8_A 2bb8_A
Probab=26.41 E-value=53 Score=22.90 Aligned_cols=23 Identities=17% Similarity=0.160 Sum_probs=18.8
Q ss_pred ceeeeEeCCCCeEEEEEeeCCCC
Q 029507 7 RYRGVRQRHWGSWVSEIRHPLLK 29 (192)
Q Consensus 7 ~YRGVr~r~~GKW~AeIr~~~~k 29 (192)
-+.|+.+|+.|+|+.++.+..++
T Consensus 11 L~~GesqR~dG~Y~yry~d~~Gk 33 (69)
T 1b69_A 11 LKTGESQRKDGRYLYKYIDSFGE 33 (69)
T ss_dssp CCTTEEECSSSCEEEEEECTTSS
T ss_pred cCCCeEEccCCcEEEEEEcCCCC
Confidence 36889999999999999887443
No 15
>1l1s_A Hypothetical protein MTH1491; structural genomics, PSI, protein STRU initiative; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.114.1.1
Probab=26.19 E-value=18 Score=25.77 Aligned_cols=22 Identities=27% Similarity=0.377 Sum_probs=18.1
Q ss_pred hHHHHHHHHHHhhcC-Cceeeec
Q 029507 165 DDHIEQMIEELLDYG-SLELCSV 186 (192)
Q Consensus 165 ~~~i~qmi~ell~~~-s~e~~~~ 186 (192)
+..+.+||++|.++| .+.+|..
T Consensus 52 ~~~~~~~i~~L~~~gV~~~~C~~ 74 (113)
T 1l1s_A 52 DSEYSGDVSELTGQGVRFCACSN 74 (113)
T ss_dssp TCTTHHHHHHHHHTTCEEEEEHH
T ss_pred CChHHHHHHHHHHCCCEEEecHH
Confidence 345789999999999 8888853
No 16
>2pd2_A Hypothetical protein ST0148; structural genomics, NPPSFA, national project on protein STR and functional analyses; 2.06A {Sulfolobus tokodaii}
Probab=23.07 E-value=23 Score=24.83 Aligned_cols=21 Identities=19% Similarity=0.370 Sum_probs=17.3
Q ss_pred HHHHHHHHHHhhcC-Cceeeec
Q 029507 166 DHIEQMIEELLDYG-SLELCSV 186 (192)
Q Consensus 166 ~~i~qmi~ell~~~-s~e~~~~ 186 (192)
..+++||++|.++| .+-.|..
T Consensus 48 ~~~~~~i~~l~~~gV~~~~C~~ 69 (108)
T 2pd2_A 48 SDTRSIIEDLIKKNILIVGCEN 69 (108)
T ss_dssp CTTHHHHHHHHHTTCEEEEEHH
T ss_pred chHHHHHHHHHHCcCEEEecHH
Confidence 35889999999999 8888853
No 17
>1p68_A De novo designed protein S-824; four helix bundle, de novo protein; NMR {Escherichia coli} SCOP: k.8.1.1 PDB: 2jua_A
Probab=22.43 E-value=19 Score=26.29 Aligned_cols=15 Identities=40% Similarity=0.525 Sum_probs=11.0
Q ss_pred chhHHHHHHHHHHhh
Q 029507 163 LEDDHIEQMIEELLD 177 (192)
Q Consensus 163 le~~~i~qmi~ell~ 177 (192)
-.-+||||-|.|+.+
T Consensus 80 htvhhieqnikeifh 94 (102)
T 1p68_A 80 HTVHHIEQNIKEIFH 94 (102)
T ss_dssp HHHHHHHHHHTTHHH
T ss_pred hhHHHHHHhHHHHHH
Confidence 345799999887754
Done!