BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 029508
(192 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2PQ6|A Chain A, Crystal Structure Of Medicago Truncatula Ugt85h2- Insights
Into The Structural Basis Of A Multifunctional (Iso)
Flavonoid Glycosyltransferase
Length = 482
Score = 187 bits (476), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 85/173 (49%), Positives = 122/173 (70%), Gaps = 4/173 (2%)
Query: 1 MDSAGARKAHAVCVPYPAQGHVSPMMQVAKLLHSKGFHITFVNTEFNHRRLIRSKGPEYV 60
M + RK H V +PYP QGH++P+ ++AKLLH +GFHITFVNTE+NH+RL++S+GP+
Sbjct: 1 MGNFANRKPHVVMIPYPVQGHINPLFKLAKLLHLRGFHITFVNTEYNHKRLLKSRGPKAF 60
Query: 61 KGLPDFRFETIPDGLPP--SDRDATQDVPALSDSIRKNGLAPFLELLGKLNSSADDQVPP 118
G DF FE+IPDGL P D D +QDVP L S+RKN L P+ ELL +LN S + VPP
Sbjct: 61 DGFTDFNFESIPDGLTPMEGDGDVSQDVPTLCQSVRKNFLKPYCELLTRLNHSTN--VPP 118
Query: 119 VTCVVSDGIMGFGRKAAQMLGILDIQFWTASACGMMGYLQHVELLKRGIVPFQ 171
VTC+VSD M F +AA+ + ++ ++++SAC ++ + ++RGI+PF+
Sbjct: 119 VTCLVSDCCMSFTIQAAEEFELPNVLYFSSSACSLLNVMHFRSFVERGIIPFK 171
>pdb|2VCE|A Chain A, Characterization And Engineering Of The Bifunctional N-
And O-glucosyltransferase Involved In Xenobiotic
Metabolism In Plants
pdb|2VCH|A Chain A, Characterization And Engineering Of The Bifunctional N-
And O-Glucosyltransferase Involved In Xenobiotic
Metabolism In Plants
pdb|2VG8|A Chain A, Characterization And Engineering Of The Bifunctional N-
And O-Glucosyltransferase Involved In Xenobiotic
Metabolism In Plants
Length = 480
Score = 33.5 bits (75), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 34/74 (45%), Gaps = 16/74 (21%)
Query: 6 ARKAHAVCVPYPAQGHVSPMMQVAK-LLHSKGFHITFVNTEFNHRRLIRSKGPEYVKGLP 64
++ H +P P GH+ P+++ AK L+H G +TFV I +GP P
Sbjct: 4 SKTPHVAIIPSPGMGHLIPLVEFAKRLVHLHGLTVTFV---------IAGEGP------P 48
Query: 65 DFRFETIPDGLPPS 78
T+ D LP S
Sbjct: 49 SKAQRTVLDSLPSS 62
>pdb|2C1X|A Chain A, Structure And Activity Of A Flavonoid 3-O
Glucosyltransferase Reveals The Basis For Plant Natural
Product Modification
pdb|2C1Z|A Chain A, Structure And Activity Of A Flavonoid 3-O
Glucosyltransferase Reveals The Basis For Plant Natural
Product Modification
pdb|2C9Z|A Chain A, Structure And Activity Of A Flavonoid 3-0
Glucosyltransferase Reveals The Basis For Plant Natural
Product Modification
Length = 456
Score = 32.7 bits (73), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 16/56 (28%), Positives = 30/56 (53%), Gaps = 1/56 (1%)
Query: 118 PVTCVVSDGIMGFGRKAAQMLGILDIQFWTASACGMMGYLQHVELLKR-GIVPFQG 172
PV+C+V+D + F A +G+ + FWTA + ++ E+ ++ G+ QG
Sbjct: 112 PVSCLVADAFIWFAADMAAEMGVAWLPFWTAGPNSLSTHVYIDEIREKIGVSGIQG 167
>pdb|3HBF|A Chain A, Structure Of Ugt78g1 Complexed With Myricetin And Udp
pdb|3HBJ|A Chain A, Structure Of Ugt78g1 Complexed With Udp
Length = 454
Score = 32.3 bits (72), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 28/157 (17%), Positives = 66/157 (42%), Gaps = 14/157 (8%)
Query: 5 GARKAHAVCVPYPAQGHVSPMMQVAKLLHSKGFHITFVNTEFNHRR-LIRSKGPEYVKGL 63
G H + +P H +P++ + K + ++ +TF + S+ E+ L
Sbjct: 10 GNNLLHVAVLAFPFGTHAAPLLSLVKKIATEAPKVTFSFFCTTTTNDTLFSRSNEF---L 66
Query: 64 PDFRFETIPDGLPP---SDRDATQDVPALSDSIRKNGLAPFLELLGKLNSSADDQVPPVT 120
P+ ++ + DGLP S + + + ++++N ++ + + +T
Sbjct: 67 PNIKYYNVHDGLPKGYVSSGNPREPIFLFIKAMQEN-------FKHVIDEAVAETGKNIT 119
Query: 121 CVVSDGIMGFGRKAAQMLGILDIQFWTASACGMMGYL 157
C+V+D FG A+ + + WTA ++ ++
Sbjct: 120 CLVTDAFFWFGADLAEEMHAKWVPLWTAGPHSLLTHV 156
>pdb|2ACW|A Chain A, Crystal Structure Of Medicago Truncatula Ugt71g1
Complexed With Udp-Glucose
pdb|2ACW|B Chain B, Crystal Structure Of Medicago Truncatula Ugt71g1
Complexed With Udp-Glucose
Length = 465
Score = 31.2 bits (69), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 18/73 (24%), Positives = 32/73 (43%), Gaps = 2/73 (2%)
Query: 7 RKAHAVCVPYPAQGHVSPMMQVAKLL--HSKGFHITFVNTEFNHRRLIRSKGPEYVKGLP 64
+ + + +P P GH++ ++ AKLL H K +IT +F S + P
Sbjct: 8 KNSELIFIPAPGIGHLASALEFAKLLTNHDKNLYITVFCIKFPGMPFADSYIKSVLASQP 67
Query: 65 DFRFETIPDGLPP 77
+ +P+ PP
Sbjct: 68 QIQLIDLPEVEPP 80
>pdb|2ACV|A Chain A, Crystal Structure Of Medicago Truncatula Ugt71g1
pdb|2ACV|B Chain B, Crystal Structure Of Medicago Truncatula Ugt71g1
Length = 463
Score = 31.2 bits (69), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 18/73 (24%), Positives = 32/73 (43%), Gaps = 2/73 (2%)
Query: 7 RKAHAVCVPYPAQGHVSPMMQVAKLL--HSKGFHITFVNTEFNHRRLIRSKGPEYVKGLP 64
+ + + +P P GH++ ++ AKLL H K +IT +F S + P
Sbjct: 8 KNSELIFIPAPGIGHLASALEFAKLLTNHDKNLYITVFCIKFPGMPFADSYIKSVLASQP 67
Query: 65 DFRFETIPDGLPP 77
+ +P+ PP
Sbjct: 68 QIQLIDLPEVEPP 80
>pdb|2IYF|A Chain A, The Crystal Structure Of Macrolide Glycosyltransferases:
A Blueprint For Antibiotic Engineering
pdb|2IYF|B Chain B, The Crystal Structure Of Macrolide Glycosyltransferases:
A Blueprint For Antibiotic Engineering
Length = 430
Score = 30.8 bits (68), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 25/94 (26%), Positives = 43/94 (45%), Gaps = 12/94 (12%)
Query: 9 AHAVCVPYPAQGHVSPMMQVAKLLHSKGFHITF-VNTEFNHRRLIRSKGPEYV------- 60
AH A GHV+P ++V + L ++G +T+ + F + + + GP V
Sbjct: 8 AHIAMFSIAAHGHVNPSLEVIRELVARGHRVTYAIPPVFADK--VAATGPRPVLYHSTLP 65
Query: 61 --KGLPDFRFETIPDGLPPSDRDATQDVPALSDS 92
P+ T+ D + P DA Q +P L+D+
Sbjct: 66 GPDADPEAWGSTLLDNVEPFLNDAIQALPQLADA 99
>pdb|3KA7|A Chain A, Crystal Structure Of An Oxidoreductase From Methanosarcina
Mazei. Northeast Structural Genomics Consortium Target
Id Mar208
Length = 425
Score = 30.8 bits (68), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 26/59 (44%), Gaps = 4/59 (6%)
Query: 39 ITFVNTEFNHRRLIRSKG-PEYVKGLPDFRFETIPDGLPPSDRDATQDVPALSDSIRKN 96
+ V +E R+ KG P+YVKG D F P L DR + L S RKN
Sbjct: 76 VNIVRSEXTTVRVPLKKGNPDYVKGFKDISFNDFPSLLSYKDR---XKIALLIVSTRKN 131
>pdb|2E2Z|A Chain A, Solution Nmr Structure Of Yeast Tim15, Co-Chaperone Of
Mitochondrial Hsp70
Length = 100
Score = 29.3 bits (64), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 34/77 (44%), Gaps = 9/77 (11%)
Query: 4 AGARKAHAVCVPYPAQGHV---SPMMQVAKLL--HSKGFHITFVNTEFNHRRLIRSKGPE 58
R +H + +G V P +V L+ H K FH V E +L+++ G +
Sbjct: 19 CNTRSSHTMSKQAYEKGTVLISCPHCKVRHLIADHLKIFHDHHVTVE----QLMKANGEQ 74
Query: 59 YVKGLPDFRFETIPDGL 75
+ + D FE IPD L
Sbjct: 75 VSQDVGDLEFEDIPDSL 91
>pdb|3NO0|A Chain A, Aquifex Aeolicus Type Iia Topoisomerase C-Terminal Domain
pdb|3NO0|B Chain B, Aquifex Aeolicus Type Iia Topoisomerase C-Terminal Domain
pdb|3NO0|C Chain C, Aquifex Aeolicus Type Iia Topoisomerase C-Terminal Domain
Length = 276
Score = 28.9 bits (63), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 21/80 (26%), Positives = 40/80 (50%), Gaps = 2/80 (2%)
Query: 41 FVNTEFNHRRLIRSKGPEYVKGLPDFRFETIPDGLPPSDRDATQDVPALSDSIRKNGLAP 100
F+ +F +R L+ +K YVK +P FE G+P +V +++ S+ + +
Sbjct: 74 FIREKFGNRLLLATKKG-YVKKIPLAEFEYKAQGMPIIKLTEGDEVVSIASSVDETHILL 132
Query: 101 FLELLGKLNSSADDQVPPVT 120
F + G++ + +VPP T
Sbjct: 133 FTK-KGRVARFSVREVPPST 151
>pdb|3SVT|A Chain A, Structure Of A Short-Chain Type DehydrogenaseREDUCTASE
FROM Mycobacterium Ulcerans
pdb|3SVT|B Chain B, Structure Of A Short-Chain Type DehydrogenaseREDUCTASE
FROM Mycobacterium Ulcerans
Length = 281
Score = 27.7 bits (60), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 18/65 (27%), Positives = 28/65 (43%), Gaps = 7/65 (10%)
Query: 2 DSAGARKAHAVCVPYPAQGHVSPMMQVAKLLHSKGFHITFVNTEFNHRRLIRSKGPEYVK 61
+SA +A+C P P QG V + +A L S F ++I G + ++
Sbjct: 207 ESAELSSDYAMCTPLPRQGEVEDVANMAMFLLSDA-------ASFVTGQVINVDGGQMLR 259
Query: 62 GLPDF 66
PDF
Sbjct: 260 RGPDF 264
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.323 0.139 0.430
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,292,088
Number of Sequences: 62578
Number of extensions: 207050
Number of successful extensions: 428
Number of sequences better than 100.0: 17
Number of HSP's better than 100.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 416
Number of HSP's gapped (non-prelim): 17
length of query: 192
length of database: 14,973,337
effective HSP length: 93
effective length of query: 99
effective length of database: 9,153,583
effective search space: 906204717
effective search space used: 906204717
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 49 (23.5 bits)