Query 029508
Match_columns 192
No_of_seqs 138 out of 1157
Neff 8.4
Searched_HMMs 46136
Date Fri Mar 29 14:02:10 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029508.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/029508hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02410 UDP-glucoronosyl/UDP- 99.9 7.3E-26 1.6E-30 197.0 18.8 153 1-166 1-153 (451)
2 PLN02562 UDP-glycosyltransfera 99.9 2.5E-25 5.4E-30 193.7 19.2 149 6-167 4-152 (448)
3 PLN02173 UDP-glucosyl transfer 99.9 1.5E-25 3.3E-30 194.6 17.4 141 7-158 4-144 (449)
4 PLN02555 limonoid glucosyltran 99.9 2.5E-25 5.4E-30 194.7 18.1 154 1-160 1-158 (480)
5 PLN02670 transferase, transfer 99.9 1.2E-24 2.7E-29 189.9 16.6 147 7-167 5-159 (472)
6 PLN02863 UDP-glucoronosyl/UDP- 99.9 1.7E-24 3.6E-29 189.7 17.2 147 1-161 1-157 (477)
7 PLN02210 UDP-glucosyl transfer 99.9 2.3E-24 5.1E-29 188.0 17.0 144 1-161 1-146 (456)
8 PLN02152 indole-3-acetate beta 99.9 3.3E-24 7.2E-29 186.6 17.6 145 8-161 3-149 (455)
9 PLN02448 UDP-glycosyltransfera 99.9 7.4E-24 1.6E-28 185.2 18.3 147 6-166 8-156 (459)
10 PLN02534 UDP-glycosyltransfera 99.9 2.7E-23 5.9E-28 182.3 17.4 142 8-159 8-160 (491)
11 PLN02554 UDP-glycosyltransfera 99.9 2.7E-23 5.8E-28 182.6 16.2 151 8-165 2-159 (481)
12 PLN02992 coniferyl-alcohol glu 99.9 6E-23 1.3E-27 179.6 16.8 141 7-163 4-149 (481)
13 PLN00164 glucosyltransferase; 99.9 5.4E-23 1.2E-27 180.5 16.5 145 8-163 3-155 (480)
14 PLN03004 UDP-glycosyltransfera 99.9 8E-23 1.7E-27 177.7 17.4 149 8-162 3-156 (451)
15 PLN03007 UDP-glucosyltransfera 99.9 1.7E-22 3.6E-27 177.6 15.7 144 7-160 4-164 (482)
16 PLN00414 glycosyltransferase f 99.9 1.6E-22 3.5E-27 175.9 15.1 135 7-158 3-146 (446)
17 PLN02207 UDP-glycosyltransfera 99.9 3.5E-22 7.5E-27 174.4 16.7 150 8-163 3-160 (468)
18 PLN03015 UDP-glucosyl transfer 99.9 5.6E-22 1.2E-26 172.9 18.0 148 8-163 3-153 (470)
19 PLN02167 UDP-glycosyltransfera 99.9 6.1E-22 1.3E-26 173.7 16.3 153 8-163 3-163 (475)
20 PLN02764 glycosyltransferase f 99.9 1.4E-21 3.1E-26 169.7 16.2 137 7-158 4-147 (453)
21 PLN02208 glycosyltransferase f 99.9 1.2E-21 2.6E-26 170.3 14.4 137 7-160 3-147 (442)
22 cd03784 GT1_Gtf_like This fami 99.6 8.8E-16 1.9E-20 131.4 9.4 126 9-150 1-136 (401)
23 TIGR01426 MGT glycosyltransfer 99.6 1.1E-14 2.4E-19 124.6 10.8 120 14-149 1-123 (392)
24 PF03033 Glyco_transf_28: Glyc 99.3 6.7E-13 1.5E-17 97.6 0.3 128 11-151 1-133 (139)
25 KOG1192 UDP-glucuronosyl and U 99.2 1.1E-11 2.4E-16 109.0 4.8 148 8-160 5-157 (496)
26 PHA03392 egt ecdysteroid UDP-g 99.0 3.8E-09 8.2E-14 93.8 11.2 129 8-151 20-170 (507)
27 PF00201 UDPGT: UDP-glucoronos 98.9 6E-11 1.3E-15 104.6 -5.2 123 10-147 2-148 (500)
28 COG1819 Glycosyl transferases, 98.5 1.7E-07 3.6E-12 81.2 6.3 45 8-52 1-45 (406)
29 PF13528 Glyco_trans_1_3: Glyc 98.5 1.5E-06 3.2E-11 72.1 11.6 121 10-151 2-126 (318)
30 TIGR00661 MJ1255 conserved hyp 98.4 3.3E-06 7.2E-11 70.7 11.2 120 11-149 2-123 (321)
31 PRK12446 undecaprenyldiphospho 98.0 0.00019 4.1E-09 61.1 12.8 120 9-151 2-126 (352)
32 COG0707 MurG UDP-N-acetylgluco 97.5 0.0026 5.6E-08 54.4 12.1 121 10-150 2-125 (357)
33 cd03785 GT1_MurG MurG is an N- 97.3 0.0039 8.4E-08 52.1 11.3 116 10-145 1-118 (350)
34 TIGR01133 murG undecaprenyldip 97.1 0.016 3.4E-07 48.4 12.9 116 10-145 2-119 (348)
35 PRK00726 murG undecaprenyldiph 97.0 0.028 6E-07 47.3 13.3 115 9-145 2-120 (357)
36 TIGR00215 lpxB lipid-A-disacch 96.7 0.016 3.5E-07 49.8 10.1 37 9-46 6-42 (385)
37 cd03818 GT1_ExpC_like This fam 96.3 0.089 1.9E-06 45.0 12.1 104 24-146 12-116 (396)
38 PRK00025 lpxB lipid-A-disaccha 95.6 0.11 2.4E-06 44.0 9.3 37 9-46 2-38 (380)
39 TIGR03590 PseG pseudaminic aci 95.5 0.2 4.3E-06 41.2 10.3 32 17-48 12-43 (279)
40 cd03823 GT1_ExpE7_like This fa 95.2 0.3 6.6E-06 39.8 10.7 30 19-48 15-44 (359)
41 cd03816 GT1_ALG1_like This fam 95.1 0.53 1.2E-05 40.7 12.3 39 8-46 3-41 (415)
42 cd03800 GT1_Sucrose_synthase T 95.1 0.15 3.3E-06 42.8 8.7 108 19-145 21-130 (398)
43 COG4671 Predicted glycosyl tra 95.0 0.23 5E-06 42.3 9.1 57 8-73 9-69 (400)
44 PRK10307 putative glycosyl tra 94.5 0.57 1.2E-05 40.2 10.9 22 25-46 21-42 (412)
45 PLN00142 sucrose synthase 94.3 0.45 9.7E-06 45.0 10.2 31 117-147 407-439 (815)
46 PF13477 Glyco_trans_4_2: Glyc 94.3 0.94 2E-05 32.4 10.0 103 10-147 1-107 (139)
47 PF12000 Glyco_trans_4_3: Gkyc 93.9 0.72 1.6E-05 35.4 9.0 43 101-147 53-96 (171)
48 PF04007 DUF354: Protein of un 93.7 0.89 1.9E-05 38.6 10.1 113 20-160 11-124 (335)
49 TIGR03449 mycothiol_MshA UDP-N 93.3 1.1 2.3E-05 38.2 10.2 111 19-147 20-132 (405)
50 TIGR02470 sucr_synth sucrose s 93.1 2.8 6.1E-05 39.6 13.2 118 19-147 279-417 (784)
51 cd03805 GT1_ALG2_like This fam 91.9 3.6 7.8E-05 34.6 11.6 36 10-45 2-39 (392)
52 TIGR02468 sucrsPsyn_pln sucros 91.7 2.4 5.2E-05 41.3 11.1 124 20-147 196-341 (1050)
53 TIGR02472 sucr_P_syn_N sucrose 91.5 3.2 7E-05 36.1 11.0 111 23-146 30-144 (439)
54 cd03819 GT1_WavL_like This fam 90.2 5.3 0.00011 32.8 10.8 97 20-147 11-109 (355)
55 cd03802 GT1_AviGT4_like This f 89.8 4.3 9.4E-05 33.0 9.9 28 20-47 20-47 (335)
56 cd03796 GT1_PIG-A_like This fa 89.1 5.5 0.00012 34.0 10.4 27 20-46 15-41 (398)
57 PF13579 Glyco_trans_4_4: Glyc 89.0 0.43 9.4E-06 34.2 3.0 98 24-148 6-105 (160)
58 cd03814 GT1_like_2 This family 88.4 0.83 1.8E-05 37.3 4.7 30 19-48 14-43 (364)
59 cd04962 GT1_like_5 This family 88.2 0.62 1.3E-05 38.8 3.8 37 10-46 2-39 (371)
60 cd03808 GT1_cap1E_like This fa 88.2 0.69 1.5E-05 37.4 4.0 39 10-48 1-39 (359)
61 PF13439 Glyco_transf_4: Glyco 88.1 0.61 1.3E-05 34.1 3.3 29 20-48 13-41 (177)
62 PRK13609 diacylglycerol glucos 88.0 0.8 1.7E-05 38.8 4.4 38 8-45 4-42 (380)
63 cd03817 GT1_UGDG_like This fam 86.3 1.3 2.8E-05 36.1 4.6 33 15-47 10-42 (374)
64 cd03794 GT1_wbuB_like This fam 85.7 1.1 2.3E-05 36.7 3.9 30 19-48 14-43 (394)
65 cd02067 B12-binding B12 bindin 85.4 2 4.2E-05 30.3 4.6 42 10-51 1-42 (119)
66 cd04951 GT1_WbdM_like This fam 83.8 1.2 2.7E-05 36.6 3.4 35 11-45 2-38 (360)
67 PRK05749 3-deoxy-D-manno-octul 82.7 10 0.00022 32.7 8.8 101 10-147 51-155 (425)
68 PLN02871 UDP-sulfoquinovose:DA 81.7 3 6.6E-05 36.5 5.2 40 7-46 57-101 (465)
69 cd03821 GT1_Bme6_like This fam 81.7 2.5 5.4E-05 34.4 4.4 31 18-48 13-43 (375)
70 PLN02275 transferase, transfer 80.5 34 0.00075 28.9 13.3 39 8-46 4-43 (371)
71 PRK02261 methylaspartate mutas 80.1 5.3 0.00012 29.3 5.3 45 8-52 3-47 (137)
72 COG3980 spsG Spore coat polysa 80.1 2.3 5.1E-05 35.3 3.6 33 17-49 13-45 (318)
73 PRK10422 lipopolysaccharide co 77.4 27 0.00059 29.4 9.5 45 7-51 4-50 (352)
74 cd03825 GT1_wcfI_like This fam 77.1 4 8.6E-05 33.5 4.3 38 10-47 2-41 (365)
75 cd03811 GT1_WabH_like This fam 76.7 4.5 9.8E-05 32.3 4.5 38 11-48 2-41 (353)
76 cd00561 CobA_CobO_BtuR ATP:cor 76.3 31 0.00067 26.0 10.1 34 9-42 3-36 (159)
77 cd01635 Glycosyltransferase_GT 76.0 4.5 9.8E-05 30.4 4.1 26 18-43 12-37 (229)
78 PRK00654 glgA glycogen synthas 75.4 4.7 0.0001 35.5 4.5 26 20-45 18-43 (466)
79 COG1519 KdtA 3-deoxy-D-manno-o 75.3 57 0.0012 28.7 11.4 113 11-161 51-169 (419)
80 cd03786 GT1_UDP-GlcNAc_2-Epime 75.2 22 0.00048 29.5 8.4 34 11-45 2-36 (363)
81 COG1703 ArgK Putative periplas 75.2 6.7 0.00014 32.9 5.0 41 9-49 52-92 (323)
82 cd03795 GT1_like_4 This family 75.1 5.3 0.00011 32.7 4.5 31 18-48 13-43 (357)
83 cd03801 GT1_YqgM_like This fam 74.1 6.1 0.00013 31.6 4.6 30 19-48 14-43 (374)
84 cd03806 GT1_ALG11_like This fa 73.9 43 0.00094 29.0 10.1 33 117-149 106-139 (419)
85 cd04955 GT1_like_6 This family 73.5 5.4 0.00012 32.8 4.3 28 20-47 16-43 (363)
86 smart00851 MGS MGS-like domain 73.0 25 0.00053 23.4 8.3 25 25-51 2-26 (90)
87 cd02070 corrinoid_protein_B12- 72.6 10 0.00023 29.5 5.4 44 8-51 82-125 (201)
88 PLN02846 digalactosyldiacylgly 72.3 6.4 0.00014 35.0 4.5 39 8-46 4-47 (462)
89 TIGR03492 conserved hypothetic 71.8 36 0.00078 29.4 9.0 25 23-47 11-40 (396)
90 PF02441 Flavoprotein: Flavopr 71.8 6.7 0.00014 28.2 3.9 41 10-51 2-42 (129)
91 PF02310 B12-binding: B12 bind 71.8 9.9 0.00021 26.4 4.7 37 10-46 2-38 (121)
92 TIGR02370 pyl_corrinoid methyl 70.2 13 0.00027 29.0 5.3 45 8-52 84-128 (197)
93 cd03820 GT1_amsD_like This fam 69.9 9.1 0.0002 30.5 4.7 30 19-48 13-42 (348)
94 cd02071 MM_CoA_mut_B12_BD meth 68.0 14 0.0003 26.3 4.8 42 10-51 1-42 (122)
95 COG1484 DnaC DNA replication p 67.5 10 0.00022 30.8 4.4 47 8-54 105-151 (254)
96 cd03791 GT1_Glycogen_synthase_ 67.1 5.6 0.00012 34.7 3.1 23 23-45 20-42 (476)
97 PF04244 DPRP: Deoxyribodipyri 67.1 6.2 0.00014 31.5 3.1 26 21-46 47-72 (224)
98 TIGR01005 eps_transp_fam exopo 66.5 86 0.0019 29.5 11.0 40 8-47 545-586 (754)
99 PF08323 Glyco_transf_5: Starc 65.3 5.2 0.00011 32.2 2.4 26 21-46 18-43 (245)
100 PRK10916 ADP-heptose:LPS hepto 65.2 82 0.0018 26.4 10.3 42 10-51 2-45 (348)
101 TIGR02201 heptsyl_trn_III lipo 64.8 58 0.0013 27.1 8.8 105 10-144 1-108 (344)
102 cd02069 methionine_synthase_B1 64.7 19 0.00041 28.5 5.4 45 7-51 87-131 (213)
103 PF07894 DUF1669: Protein of u 63.6 15 0.00033 30.5 4.7 33 117-149 147-184 (284)
104 PF06506 PrpR_N: Propionate ca 62.4 34 0.00074 25.9 6.3 117 20-155 17-159 (176)
105 PF04127 DFP: DNA / pantothena 62.3 8.8 0.00019 29.7 3.0 22 25-46 32-53 (185)
106 cd01423 MGS_CPS_I_III Methylgl 61.3 53 0.0011 22.9 7.5 27 23-51 13-39 (116)
107 PF02951 GSH-S_N: Prokaryotic 60.7 19 0.00041 25.9 4.3 38 10-47 2-42 (119)
108 cd01018 ZntC Metal binding pro 60.4 32 0.00069 27.9 6.2 51 100-156 205-257 (266)
109 TIGR02095 glgA glycogen/starch 60.1 9.1 0.0002 33.6 3.1 26 20-45 18-43 (473)
110 PF09314 DUF1972: Domain of un 60.0 14 0.00031 28.6 3.8 56 9-72 2-62 (185)
111 PF12146 Hydrolase_4: Putative 59.2 22 0.00048 23.3 4.2 34 9-42 16-49 (79)
112 cd03799 GT1_amsK_like This is 59.2 21 0.00045 29.1 5.0 26 22-47 14-39 (355)
113 COG1817 Uncharacterized protei 58.6 1.2E+02 0.0025 25.9 11.1 108 20-155 11-120 (346)
114 cd03812 GT1_CapH_like This fam 58.1 11 0.00025 30.8 3.3 30 18-47 11-40 (358)
115 TIGR02195 heptsyl_trn_II lipop 57.9 1.1E+02 0.0023 25.4 9.6 42 10-51 1-44 (334)
116 PRK07313 phosphopantothenoylcy 57.8 17 0.00037 28.0 3.9 42 9-51 2-43 (182)
117 TIGR00347 bioD dethiobiotin sy 56.0 72 0.0016 23.4 7.1 27 16-42 6-32 (166)
118 TIGR00708 cobA cob(I)alamin ad 55.7 92 0.002 23.9 10.0 35 8-42 5-39 (173)
119 COG2185 Sbm Methylmalonyl-CoA 55.3 30 0.00065 25.7 4.7 46 6-51 10-55 (143)
120 COG0467 RAD55 RecA-superfamily 54.7 33 0.00072 27.5 5.4 45 8-52 23-67 (260)
121 KOG2941 Beta-1,4-mannosyltrans 54.6 55 0.0012 28.3 6.6 60 5-73 9-70 (444)
122 COG0162 TyrS Tyrosyl-tRNA synt 54.6 14 0.0003 32.3 3.2 36 10-46 36-74 (401)
123 cd03798 GT1_wlbH_like This fam 54.3 21 0.00046 28.6 4.2 31 18-48 13-43 (377)
124 PF01210 NAD_Gly3P_dh_N: NAD-d 53.8 13 0.00027 27.7 2.5 22 25-46 11-32 (157)
125 TIGR02193 heptsyl_trn_I lipopo 53.6 30 0.00065 28.5 5.0 42 10-51 1-44 (319)
126 cd03822 GT1_ecORF704_like This 53.4 21 0.00046 28.9 4.1 29 19-47 13-41 (366)
127 cd01425 RPS2 Ribosomal protein 53.3 93 0.002 24.0 7.5 33 117-149 126-160 (193)
128 PRK08305 spoVFB dipicolinate s 52.8 19 0.00041 28.2 3.4 39 10-49 7-46 (196)
129 PRK11519 tyrosine kinase; Prov 52.6 2.1E+02 0.0044 27.0 15.0 41 8-48 525-567 (719)
130 PF03808 Glyco_tran_WecB: Glyc 52.5 99 0.0021 23.3 8.9 98 23-151 35-137 (172)
131 PF13450 NAD_binding_8: NAD(P) 52.4 20 0.00043 22.7 3.0 20 25-44 8-27 (68)
132 PF01975 SurE: Survival protei 51.9 14 0.00031 28.8 2.6 27 24-50 15-41 (196)
133 PRK05986 cob(I)alamin adenolsy 51.0 36 0.00079 26.5 4.8 35 8-42 22-56 (191)
134 cd03789 GT1_LPS_heptosyltransf 49.9 1.3E+02 0.0029 24.1 10.1 42 10-51 1-44 (279)
135 PRK09841 cryptic autophosphory 49.7 2.3E+02 0.005 26.7 13.7 40 8-47 530-571 (726)
136 PF00070 Pyr_redox: Pyridine n 49.3 26 0.00057 22.5 3.3 24 23-46 9-32 (80)
137 COG2910 Putative NADH-flavin r 49.1 17 0.00037 28.5 2.6 35 10-48 2-36 (211)
138 COG2894 MinD Septum formation 47.8 40 0.00086 27.3 4.5 37 9-45 2-40 (272)
139 PRK09620 hypothetical protein; 47.5 22 0.00047 28.5 3.1 21 25-45 32-52 (229)
140 PRK01021 lpxB lipid-A-disaccha 47.3 39 0.00085 31.2 5.0 47 99-151 297-348 (608)
141 PRK07773 replicative DNA helic 47.3 1.3E+02 0.0029 29.0 8.9 42 11-52 220-262 (886)
142 TIGR02852 spore_dpaB dipicolin 47.3 28 0.0006 27.1 3.6 39 10-48 2-40 (187)
143 PLN02891 IMP cyclohydrolase 46.8 89 0.0019 28.4 7.0 43 23-77 33-77 (547)
144 cd03807 GT1_WbnK_like This fam 46.1 38 0.00083 27.1 4.5 29 18-46 11-39 (365)
145 COG4088 Predicted nucleotide k 46.0 31 0.00067 27.7 3.7 35 10-44 3-37 (261)
146 PRK06249 2-dehydropantoate 2-r 46.0 27 0.00058 29.0 3.6 35 7-46 4-38 (313)
147 PF05889 SLA_LP_auto_ag: Solub 45.4 37 0.00081 29.5 4.4 73 101-179 144-227 (389)
148 COG1090 Predicted nucleoside-d 45.1 1.1E+02 0.0024 25.5 6.8 23 26-48 12-34 (297)
149 PF04413 Glycos_transf_N: 3-De 44.9 1.3E+02 0.0028 23.1 7.1 117 10-163 22-143 (186)
150 PF01555 N6_N4_Mtase: DNA meth 44.9 30 0.00064 26.5 3.5 45 99-151 179-225 (231)
151 PRK06732 phosphopantothenate-- 44.7 25 0.00055 28.0 3.1 31 13-45 19-49 (229)
152 cd05844 GT1_like_7 Glycosyltra 44.6 1.7E+02 0.0038 23.8 9.4 29 117-145 81-111 (367)
153 PF03308 ArgK: ArgK protein; 44.4 49 0.0011 27.2 4.7 42 8-49 29-70 (266)
154 PF03720 UDPG_MGDP_dh_C: UDP-g 44.3 31 0.00068 23.7 3.2 29 23-51 17-45 (106)
155 cd02034 CooC The accessory pro 43.5 66 0.0014 22.6 4.8 37 10-46 1-37 (116)
156 cd02065 B12-binding_like B12 b 43.2 65 0.0014 22.2 4.8 39 11-49 2-40 (125)
157 COG1797 CobB Cobyrinic acid a, 43.0 35 0.00077 30.1 3.9 30 13-42 6-35 (451)
158 TIGR00234 tyrS tyrosyl-tRNA sy 42.2 24 0.00052 30.5 2.8 26 20-46 47-72 (377)
159 TIGR00655 PurU formyltetrahydr 41.3 1.1E+02 0.0023 25.4 6.4 45 99-147 96-140 (280)
160 COG1255 Uncharacterized protei 41.1 31 0.00068 24.8 2.7 22 24-45 24-45 (129)
161 TIGR03568 NeuC_NnaA UDP-N-acet 40.7 48 0.001 28.3 4.4 35 10-45 2-37 (365)
162 TIGR02113 coaC_strep phosphopa 40.6 38 0.00082 25.9 3.4 34 18-51 9-42 (177)
163 PF03853 YjeF_N: YjeF-related 40.6 33 0.00071 25.9 3.0 35 8-44 25-60 (169)
164 TIGR00421 ubiX_pad polyprenyl 40.6 39 0.00084 26.0 3.5 27 25-51 15-41 (181)
165 PF00448 SRP54: SRP54-type pro 40.5 47 0.001 25.7 4.0 39 10-48 3-41 (196)
166 PRK06719 precorrin-2 dehydroge 40.2 97 0.0021 23.1 5.5 32 9-45 14-45 (157)
167 PF02374 ArsA_ATPase: Anion-tr 40.2 47 0.001 27.7 4.2 40 10-49 2-42 (305)
168 COG0299 PurN Folate-dependent 39.5 93 0.002 24.5 5.4 33 118-150 29-61 (200)
169 PF07015 VirC1: VirC1 protein; 39.4 83 0.0018 25.3 5.3 39 11-49 4-43 (231)
170 PF02350 Epimerase_2: UDP-N-ac 39.2 38 0.00082 28.7 3.5 41 99-148 57-100 (346)
171 PRK09444 pntB pyridine nucleot 38.9 54 0.0012 29.1 4.4 36 9-46 307-347 (462)
172 PLN00016 RNA-binding protein; 38.7 45 0.00098 28.3 4.0 37 8-46 52-90 (378)
173 TIGR00064 ftsY signal recognit 38.7 85 0.0018 25.7 5.4 39 9-47 73-111 (272)
174 PF13460 NAD_binding_10: NADH( 38.6 33 0.00072 25.4 2.8 23 25-47 11-33 (183)
175 PRK14089 ipid-A-disaccharide s 38.6 70 0.0015 27.3 5.1 37 117-153 75-116 (347)
176 COG0569 TrkA K+ transport syst 38.3 31 0.00066 27.4 2.7 24 25-48 12-35 (225)
177 PF09001 DUF1890: Domain of un 38.1 27 0.00058 25.8 2.1 28 24-51 15-42 (139)
178 cd03115 SRP The signal recogni 38.0 89 0.0019 23.1 5.1 38 11-48 3-40 (173)
179 PLN02650 dihydroflavonol-4-red 37.9 64 0.0014 26.9 4.7 34 7-44 4-37 (351)
180 PLN02778 3,5-epimerase/4-reduc 37.9 61 0.0013 26.6 4.5 35 5-43 6-40 (298)
181 TIGR00640 acid_CoA_mut_C methy 37.8 48 0.001 24.1 3.4 38 7-44 52-90 (132)
182 PRK13982 bifunctional SbtC-lik 37.7 33 0.00071 30.7 3.0 38 9-46 257-306 (475)
183 PF08660 Alg14: Oligosaccharid 37.5 1.4E+02 0.0031 22.6 6.1 32 117-148 91-130 (170)
184 COG1763 MobB Molybdopterin-gua 37.4 80 0.0017 23.9 4.7 34 12-45 6-39 (161)
185 PF02684 LpxB: Lipid-A-disacch 37.3 74 0.0016 27.5 5.0 31 117-147 81-116 (373)
186 PF10087 DUF2325: Uncharacteri 37.2 81 0.0018 21.2 4.4 36 118-153 48-89 (97)
187 cd01981 Pchlide_reductase_B Pc 37.2 58 0.0013 28.4 4.5 27 117-146 369-395 (430)
188 PF03446 NAD_binding_2: NAD bi 37.0 87 0.0019 23.2 4.9 32 9-45 2-33 (163)
189 PRK05920 aromatic acid decarbo 37.0 59 0.0013 25.6 4.0 43 8-51 3-45 (204)
190 PF07355 GRDB: Glycine/sarcosi 36.9 69 0.0015 27.4 4.6 30 117-146 79-118 (349)
191 PRK08229 2-dehydropantoate 2-r 36.8 37 0.00081 28.3 3.1 33 9-46 3-35 (341)
192 PRK00771 signal recognition pa 36.7 95 0.0021 27.5 5.7 42 8-49 95-136 (437)
193 PRK14098 glycogen synthase; Pr 36.7 36 0.00079 30.3 3.2 39 7-45 4-48 (489)
194 PRK06222 ferredoxin-NADP(+) re 36.6 50 0.0011 27.0 3.8 38 9-48 99-136 (281)
195 PF03403 PAF-AH_p_II: Platelet 36.3 35 0.00077 29.4 2.9 36 8-43 99-134 (379)
196 PLN02939 transferase, transfer 36.1 72 0.0016 31.2 5.1 38 8-45 481-524 (977)
197 TIGR00236 wecB UDP-N-acetylglu 36.1 70 0.0015 26.8 4.7 35 10-45 2-37 (365)
198 PF07302 AroM: AroM protein; 35.8 77 0.0017 25.3 4.5 46 99-150 165-213 (221)
199 COG0300 DltE Short-chain dehyd 35.8 38 0.00083 27.8 2.9 34 9-45 6-39 (265)
200 PRK06029 3-octaprenyl-4-hydrox 35.6 63 0.0014 25.0 4.0 42 9-51 2-44 (185)
201 PLN02316 synthase/transferase 35.5 37 0.00081 33.4 3.2 39 8-46 587-631 (1036)
202 PF08026 Antimicrobial_5: Bee 35.3 4.9 0.00011 22.3 -1.6 25 13-37 15-39 (39)
203 TIGR01425 SRP54_euk signal rec 35.3 92 0.002 27.5 5.3 40 9-48 101-140 (429)
204 cd01983 Fer4_NifH The Fer4_Nif 35.2 1.1E+02 0.0025 19.2 4.8 32 12-43 3-34 (99)
205 TIGR02700 flavo_MJ0208 archaeo 35.1 58 0.0013 26.0 3.8 35 17-51 7-44 (234)
206 TIGR01007 eps_fam capsular exo 35.0 1.2E+02 0.0025 23.2 5.4 38 9-46 17-56 (204)
207 cd01421 IMPCH Inosine monophos 34.9 2.2E+02 0.0047 22.2 6.9 26 24-51 12-37 (187)
208 PRK10964 ADP-heptose:LPS hepto 34.6 77 0.0017 26.2 4.6 42 10-51 2-45 (322)
209 cd01124 KaiC KaiC is a circadi 34.5 1.1E+02 0.0023 22.7 5.1 41 11-51 2-42 (187)
210 COG0543 UbiB 2-polyprenylpheno 34.4 52 0.0011 26.5 3.5 37 11-49 110-148 (252)
211 PF02558 ApbA: Ketopantoate re 34.4 41 0.0009 24.2 2.7 21 26-46 11-31 (151)
212 TIGR00679 hpr-ser Hpr(Ser) kin 34.3 2.8E+02 0.0061 23.3 8.1 48 99-151 69-118 (304)
213 PF05724 TPMT: Thiopurine S-me 34.3 46 0.00099 26.4 3.1 30 11-46 40-69 (218)
214 PF01297 TroA: Periplasmic sol 34.3 81 0.0018 25.2 4.6 43 100-148 187-231 (256)
215 PRK12311 rpsB 30S ribosomal pr 34.0 53 0.0012 27.9 3.6 32 118-149 152-185 (326)
216 PF06925 MGDG_synth: Monogalac 33.9 1E+02 0.0022 22.9 4.8 24 21-44 1-27 (169)
217 PF12695 Abhydrolase_5: Alpha/ 33.6 1.2E+02 0.0025 21.0 4.9 33 12-45 3-35 (145)
218 PRK15411 rcsA colanic acid cap 33.3 94 0.002 24.1 4.7 33 117-149 46-87 (207)
219 PF01695 IstB_IS21: IstB-like 33.0 68 0.0015 24.4 3.8 44 8-51 47-90 (178)
220 PF00391 PEP-utilizers: PEP-ut 32.9 68 0.0015 20.9 3.3 30 118-147 30-61 (80)
221 PLN00141 Tic62-NAD(P)-related 32.9 1.2E+02 0.0026 23.9 5.3 33 8-44 17-49 (251)
222 TIGR00176 mobB molybdopterin-g 32.8 1E+02 0.0022 22.8 4.6 35 11-45 2-36 (155)
223 PRK14099 glycogen synthase; Pr 32.8 44 0.00096 29.7 3.0 37 9-45 4-46 (485)
224 TIGR00745 apbA_panE 2-dehydrop 32.7 36 0.00079 27.4 2.4 25 27-51 5-29 (293)
225 cd01017 AdcA Metal binding pro 32.7 97 0.0021 25.3 4.9 44 100-149 208-253 (282)
226 PLN02662 cinnamyl-alcohol dehy 32.6 70 0.0015 26.0 4.1 33 9-45 5-37 (322)
227 COG0665 DadA Glycine/D-amino a 32.6 67 0.0014 26.9 4.0 35 7-46 3-37 (387)
228 PRK09361 radB DNA repair and r 32.4 1.1E+02 0.0024 23.7 5.0 38 8-45 22-60 (225)
229 PF02233 PNTB: NAD(P) transhyd 32.4 64 0.0014 28.8 3.9 36 9-46 308-348 (463)
230 PRK10481 hypothetical protein; 32.3 97 0.0021 24.8 4.6 45 100-150 170-217 (224)
231 cd00861 ProRS_anticodon_short 32.2 1E+02 0.0022 20.0 4.2 35 10-44 3-39 (94)
232 PF01380 SIS: SIS domain SIS d 32.2 94 0.002 21.5 4.2 31 18-48 62-92 (131)
233 PRK06849 hypothetical protein; 32.1 1.2E+02 0.0025 25.9 5.5 35 8-46 4-38 (389)
234 TIGR02114 coaB_strep phosphopa 32.0 48 0.0011 26.3 2.9 19 25-43 28-46 (227)
235 TIGR01675 plant-AP plant acid 32.0 61 0.0013 26.0 3.4 26 23-48 123-148 (229)
236 CHL00076 chlB photochlorophyll 31.9 76 0.0016 28.6 4.4 27 117-146 373-399 (513)
237 cd03809 GT1_mtfB_like This fam 31.8 43 0.00094 27.1 2.7 29 20-48 16-44 (365)
238 PRK14974 cell division protein 31.7 1.3E+02 0.0028 25.6 5.6 40 8-47 140-179 (336)
239 PF02603 Hpr_kinase_N: HPr Ser 31.7 58 0.0013 23.3 3.0 33 117-149 81-115 (127)
240 PLN03050 pyridoxine (pyridoxam 31.2 49 0.0011 26.8 2.8 33 9-44 61-95 (246)
241 TIGR02699 archaeo_AfpA archaeo 31.0 70 0.0015 24.5 3.5 32 18-49 8-41 (174)
242 TIGR03264 met_CoM_red_C methyl 30.9 65 0.0014 24.9 3.2 34 10-43 35-69 (194)
243 PF03796 DnaB_C: DnaB-like hel 30.8 1.2E+02 0.0026 24.2 5.1 42 11-52 22-64 (259)
244 COG2085 Predicted dinucleotide 30.8 59 0.0013 25.8 3.1 29 18-48 8-36 (211)
245 PRK13608 diacylglycerol glucos 30.7 95 0.0021 26.5 4.7 36 7-42 4-43 (391)
246 cd03466 Nitrogenase_NifN_2 Nit 30.7 90 0.002 27.3 4.6 26 117-145 371-396 (429)
247 COG0003 ArsA Predicted ATPase 30.7 1.1E+02 0.0023 26.0 4.8 41 9-49 2-43 (322)
248 PRK13185 chlL protochlorophyll 30.6 1.1E+02 0.0023 24.6 4.7 35 11-45 5-39 (270)
249 PRK05973 replicative DNA helic 30.6 1.1E+02 0.0023 24.7 4.6 42 10-51 66-107 (237)
250 PF03205 MobB: Molybdopterin g 30.4 1.1E+02 0.0024 22.2 4.4 34 10-43 2-35 (140)
251 TIGR01501 MthylAspMutase methy 30.3 1.5E+02 0.0032 21.7 5.0 45 9-53 2-46 (134)
252 PRK04148 hypothetical protein; 30.3 57 0.0012 23.9 2.8 33 9-47 18-50 (134)
253 PF01266 DAO: FAD dependent ox 30.2 53 0.0012 26.8 3.0 21 25-45 11-31 (358)
254 cd02037 MRP-like MRP (Multiple 30.2 1.1E+02 0.0025 22.5 4.6 30 17-46 9-38 (169)
255 cd03792 GT1_Trehalose_phosphor 30.1 78 0.0017 26.4 4.0 28 19-46 12-39 (372)
256 COG4081 Uncharacterized protei 30.1 1.1E+02 0.0024 22.5 4.1 37 13-49 8-45 (148)
257 TIGR03087 stp1 sugar transfera 30.0 44 0.00095 28.4 2.5 32 14-46 8-40 (397)
258 KOG1838 Alpha/beta hydrolase [ 30.0 1.6E+02 0.0036 25.8 5.9 40 7-46 124-164 (409)
259 PRK12921 2-dehydropantoate 2-r 29.9 53 0.0011 26.8 2.9 31 10-45 2-32 (305)
260 PRK13011 formyltetrahydrofolat 29.9 1.4E+02 0.003 24.7 5.3 44 99-146 101-144 (286)
261 PF05728 UPF0227: Uncharacteri 29.8 1.4E+02 0.003 23.0 5.0 44 101-151 49-93 (187)
262 PRK13604 luxD acyl transferase 29.8 1.5E+02 0.0032 24.9 5.5 33 10-42 38-70 (307)
263 PRK08939 primosomal protein Dn 29.6 95 0.0021 25.9 4.4 44 8-51 156-199 (306)
264 PRK00090 bioD dithiobiotin syn 29.5 2.6E+02 0.0057 21.5 6.9 28 16-43 8-35 (222)
265 COG1435 Tdk Thymidine kinase [ 29.5 2.8E+02 0.0061 21.8 10.3 39 8-46 3-42 (201)
266 PRK05802 hypothetical protein; 29.0 73 0.0016 26.7 3.6 38 9-48 173-210 (320)
267 cd00395 Tyr_Trp_RS_core cataly 29.0 51 0.0011 27.0 2.6 25 20-45 16-40 (273)
268 PRK06522 2-dehydropantoate 2-r 29.0 74 0.0016 25.8 3.6 31 10-45 2-32 (304)
269 TIGR00725 conserved hypothetic 29.0 99 0.0021 23.1 4.0 33 9-41 2-36 (159)
270 KOG1014 17 beta-hydroxysteroid 29.0 54 0.0012 27.6 2.7 32 10-44 50-81 (312)
271 COG1618 Predicted nucleotide k 28.9 1.2E+02 0.0026 23.3 4.4 42 7-48 4-45 (179)
272 PLN02331 phosphoribosylglycina 28.8 1.7E+02 0.0038 22.9 5.5 46 100-147 12-57 (207)
273 cd01965 Nitrogenase_MoFe_beta_ 28.7 1E+02 0.0022 26.9 4.5 26 117-145 370-395 (428)
274 PTZ00445 p36-lilke protein; Pr 28.6 61 0.0013 25.9 2.8 28 20-47 74-102 (219)
275 TIGR01278 DPOR_BchB light-inde 28.5 97 0.0021 27.8 4.5 27 117-146 363-389 (511)
276 PRK12342 hypothetical protein; 28.5 99 0.0021 25.2 4.1 31 118-148 109-145 (254)
277 PRK14619 NAD(P)H-dependent gly 28.5 71 0.0015 26.4 3.4 33 8-45 4-36 (308)
278 PRK06835 DNA replication prote 28.4 88 0.0019 26.5 4.0 43 9-51 184-226 (329)
279 cd01424 MGS_CPS_II Methylglyox 28.4 1.7E+02 0.0036 20.0 4.9 84 20-144 10-100 (110)
280 PF01949 DUF99: Protein of unk 28.4 1.1E+02 0.0025 23.7 4.3 35 117-151 63-103 (187)
281 COG0451 WcaG Nucleoside-diphos 28.3 96 0.0021 24.9 4.2 26 19-46 9-34 (314)
282 PRK14106 murD UDP-N-acetylmura 28.3 1E+02 0.0022 26.8 4.5 33 9-46 6-38 (450)
283 PF01316 Arg_repressor: Argini 28.3 36 0.00078 22.0 1.3 24 24-47 21-44 (70)
284 cd01141 TroA_d Periplasmic bin 28.2 98 0.0021 23.1 4.0 30 118-147 69-100 (186)
285 PF00175 NAD_binding_1: Oxidor 28.2 94 0.002 20.7 3.5 27 22-48 8-36 (109)
286 TIGR00730 conserved hypothetic 28.1 1.2E+02 0.0025 23.3 4.3 34 10-43 2-39 (178)
287 PRK03094 hypothetical protein; 28.0 59 0.0013 21.7 2.3 21 25-45 10-30 (80)
288 COG0052 RpsB Ribosomal protein 28.0 73 0.0016 26.0 3.2 33 118-150 156-190 (252)
289 TIGR03088 stp2 sugar transfera 27.9 1E+02 0.0022 25.6 4.4 37 9-45 2-40 (374)
290 TIGR03018 pepcterm_TyrKin exop 27.9 1.7E+02 0.0037 22.5 5.3 40 8-47 34-76 (207)
291 TIGR03453 partition_RepA plasm 27.8 1.2E+02 0.0027 25.9 4.9 39 8-46 103-143 (387)
292 TIGR00288 conserved hypothetic 27.7 85 0.0018 23.8 3.4 32 10-46 108-139 (160)
293 TIGR01990 bPGM beta-phosphoglu 27.7 2.5E+02 0.0054 20.6 8.6 23 25-47 92-114 (185)
294 PF03698 UPF0180: Uncharacteri 27.4 60 0.0013 21.6 2.2 22 25-46 10-31 (80)
295 PF13614 AAA_31: AAA domain; P 27.3 1.3E+02 0.0028 21.6 4.3 34 16-49 9-42 (157)
296 PRK13354 tyrosyl-tRNA syntheta 27.3 71 0.0015 28.0 3.3 27 20-47 50-76 (410)
297 TIGR00355 purH phosphoribosyla 27.2 2.4E+02 0.0052 25.6 6.5 26 24-51 12-37 (511)
298 PRK10867 signal recognition pa 27.2 1.2E+02 0.0025 26.9 4.6 40 10-49 102-142 (433)
299 cd02040 NifH NifH gene encodes 27.2 1.4E+02 0.003 23.7 4.8 37 10-46 3-39 (270)
300 cd00805 TyrRS_core catalytic c 27.2 72 0.0016 26.1 3.2 26 20-46 17-42 (269)
301 COG0503 Apt Adenine/guanine ph 27.1 1.6E+02 0.0035 22.5 4.9 30 117-146 52-83 (179)
302 TIGR03499 FlhF flagellar biosy 27.1 1.3E+02 0.0029 24.6 4.8 39 10-48 196-236 (282)
303 PRK09219 xanthine phosphoribos 26.9 1.5E+02 0.0032 23.0 4.7 33 117-149 49-83 (189)
304 PF10657 RC-P840_PscD: Photosy 26.9 96 0.0021 22.4 3.3 39 8-46 46-84 (144)
305 COG3046 Uncharacterized protei 26.8 75 0.0016 28.0 3.3 26 21-46 51-76 (505)
306 PRK13609 diacylglycerol glucos 26.8 1.1E+02 0.0025 25.6 4.5 31 117-147 103-135 (380)
307 cd01980 Chlide_reductase_Y Chl 26.6 1.1E+02 0.0023 26.7 4.4 27 117-146 349-375 (416)
308 TIGR02329 propionate_PrpR prop 26.6 1.1E+02 0.0024 27.7 4.5 41 99-148 132-172 (526)
309 cd01965 Nitrogenase_MoFe_beta_ 26.4 1.6E+02 0.0034 25.7 5.4 41 118-158 223-265 (428)
310 cd01452 VWA_26S_proteasome_sub 26.2 2.5E+02 0.0055 21.7 5.9 33 11-43 111-143 (187)
311 TIGR01918 various_sel_PB selen 26.2 1.3E+02 0.0029 26.5 4.7 30 117-146 75-114 (431)
312 PRK11889 flhF flagellar biosyn 26.2 1.5E+02 0.0033 26.2 5.1 40 9-48 242-281 (436)
313 TIGR01917 gly_red_sel_B glycin 26.1 1.3E+02 0.0029 26.5 4.7 30 117-146 75-114 (431)
314 TIGR01285 nifN nitrogenase mol 26.1 1E+02 0.0022 27.1 4.1 24 117-143 372-395 (432)
315 PF02142 MGS: MGS-like domain 26.1 68 0.0015 21.5 2.4 26 25-52 2-27 (95)
316 PRK00945 acetyl-CoA decarbonyl 26.0 1.8E+02 0.0038 22.3 4.9 30 117-147 35-71 (171)
317 PRK06067 flagellar accessory p 26.0 2E+02 0.0043 22.5 5.5 44 8-51 25-68 (234)
318 PRK14494 putative molybdopteri 26.0 1.5E+02 0.0033 23.7 4.8 33 11-43 4-36 (229)
319 PF13378 MR_MLE_C: Enolase C-t 25.9 1.9E+02 0.0041 19.6 4.8 52 100-160 9-67 (111)
320 TIGR01012 Sa_S2_E_A ribosomal 25.9 96 0.0021 24.3 3.5 31 118-148 108-140 (196)
321 PRK09545 znuA high-affinity zi 25.7 1.5E+02 0.0033 24.7 4.9 44 100-149 240-285 (311)
322 cd00550 ArsA_ATPase Oxyanion-t 25.6 1.3E+02 0.0027 24.2 4.3 38 11-48 2-40 (254)
323 PF04493 Endonuclease_5: Endon 25.6 95 0.0021 24.5 3.5 44 99-149 77-127 (206)
324 TIGR00379 cobB cobyrinic acid 25.6 2.2E+02 0.0047 25.1 6.1 101 17-150 9-121 (449)
325 COG0859 RfaF ADP-heptose:LPS h 25.6 4E+02 0.0086 22.2 8.9 107 9-147 2-110 (334)
326 PF14626 RNase_Zc3h12a_2: Zc3h 25.4 88 0.0019 22.5 2.9 30 22-51 9-38 (122)
327 PRK13608 diacylglycerol glucos 25.4 1.1E+02 0.0025 26.0 4.2 32 117-148 103-136 (391)
328 PRK07231 fabG 3-ketoacyl-(acyl 25.4 75 0.0016 24.6 2.9 21 25-45 18-38 (251)
329 PF01656 CbiA: CobQ/CobB/MinD/ 25.2 1.4E+02 0.003 22.1 4.3 31 17-47 8-38 (195)
330 PF01494 FAD_binding_3: FAD bi 25.2 75 0.0016 25.8 3.0 21 24-44 12-32 (356)
331 PLN02211 methyl indole-3-aceta 25.0 1.8E+02 0.0038 23.4 5.1 40 6-46 16-55 (273)
332 PRK06718 precorrin-2 dehydroge 25.0 1.4E+02 0.0029 23.3 4.3 33 9-46 11-43 (202)
333 PF09140 MipZ: ATPase MipZ; I 25.0 1.2E+02 0.0027 24.9 4.0 39 10-48 1-41 (261)
334 PLN02605 monogalactosyldiacylg 24.9 1.9E+02 0.0041 24.5 5.5 48 89-147 80-137 (382)
335 PF00975 Thioesterase: Thioest 24.9 74 0.0016 24.4 2.8 32 10-42 2-33 (229)
336 PRK11524 putative methyltransf 24.8 1.2E+02 0.0025 24.9 4.0 49 100-156 197-247 (284)
337 PRK00881 purH bifunctional pho 24.8 3.5E+02 0.0077 24.6 7.2 27 23-51 15-41 (513)
338 PRK08558 adenine phosphoribosy 24.6 1.3E+02 0.0028 24.2 4.1 29 117-145 110-140 (238)
339 PRK10037 cell division protein 24.6 1.6E+02 0.0034 23.4 4.7 37 10-46 3-40 (250)
340 PRK05234 mgsA methylglyoxal sy 24.5 2.9E+02 0.0063 20.3 8.7 101 9-150 5-117 (142)
341 cd01147 HemV-2 Metal binding p 24.4 1.2E+02 0.0026 23.9 4.0 31 118-148 74-107 (262)
342 PRK06603 enoyl-(acyl carrier p 24.4 1.7E+02 0.0037 23.1 4.9 35 8-43 7-41 (260)
343 TIGR02622 CDP_4_6_dhtase CDP-g 24.4 1.3E+02 0.0029 25.0 4.4 30 10-43 6-35 (349)
344 CHL00194 ycf39 Ycf39; Provisio 24.4 72 0.0016 26.2 2.7 32 10-45 2-33 (317)
345 CHL00175 minD septum-site dete 24.3 1.8E+02 0.0038 23.5 5.0 39 8-46 14-54 (281)
346 TIGR01689 EcbF-BcbF capsule bi 24.3 1.1E+02 0.0024 22.0 3.4 26 24-49 28-53 (126)
347 PRK02910 light-independent pro 24.3 1.3E+02 0.0027 27.2 4.4 26 117-145 361-386 (519)
348 PF00205 TPP_enzyme_M: Thiamin 24.2 1.1E+02 0.0024 21.7 3.5 31 117-148 12-48 (137)
349 cd02032 Bchl_like This family 24.1 1.6E+02 0.0034 23.6 4.7 36 11-46 3-38 (267)
350 cd01120 RecA-like_NTPases RecA 24.0 2.2E+02 0.0048 19.9 5.1 40 10-49 1-40 (165)
351 PRK12825 fabG 3-ketoacyl-(acyl 24.0 98 0.0021 23.7 3.4 33 9-45 7-39 (249)
352 cd02067 B12-binding B12 bindin 23.9 1.3E+02 0.0029 20.7 3.7 36 8-43 50-86 (119)
353 PRK06194 hypothetical protein; 23.9 81 0.0018 25.2 2.9 20 25-44 19-38 (287)
354 PRK04020 rps2P 30S ribosomal p 23.9 1.1E+02 0.0023 24.2 3.5 31 118-148 114-146 (204)
355 PRK12726 flagellar biosynthesi 23.8 1.8E+02 0.0039 25.5 5.1 39 10-48 208-246 (407)
356 TIGR02015 BchY chlorophyllide 23.8 1.1E+02 0.0025 26.7 4.0 27 117-146 354-380 (422)
357 PRK00094 gpsA NAD(P)H-dependen 23.8 89 0.0019 25.7 3.2 33 9-46 2-34 (325)
358 PRK11259 solA N-methyltryptoph 23.7 77 0.0017 26.5 2.9 30 10-44 5-34 (376)
359 PRK12827 short chain dehydroge 23.6 82 0.0018 24.3 2.8 30 10-43 8-37 (249)
360 PF03807 F420_oxidored: NADP o 23.6 2.2E+02 0.0047 18.5 4.7 31 11-46 2-35 (96)
361 PF02302 PTS_IIB: PTS system, 23.5 1.4E+02 0.0031 19.3 3.6 36 10-45 1-37 (90)
362 COG1348 NifH Nitrogenase subun 23.5 2.2E+02 0.0047 23.4 5.1 41 9-49 2-42 (278)
363 PLN02293 adenine phosphoribosy 23.4 2E+02 0.0043 22.1 4.9 30 117-146 61-92 (187)
364 PRK00889 adenylylsulfate kinas 23.4 2.2E+02 0.0048 21.0 5.1 39 10-48 6-44 (175)
365 TIGR01286 nifK nitrogenase mol 23.4 1.4E+02 0.003 27.0 4.5 26 117-145 436-461 (515)
366 cd01122 GP4d_helicase GP4d_hel 23.4 1.7E+02 0.0038 23.3 4.8 42 10-51 32-74 (271)
367 PRK13869 plasmid-partitioning 23.2 1.8E+02 0.004 25.2 5.1 37 10-46 122-160 (405)
368 COG1440 CelA Phosphotransferas 23.2 2.1E+02 0.0046 19.9 4.4 38 8-45 1-38 (102)
369 PHA02519 plasmid partition pro 23.1 1.8E+02 0.0039 25.2 5.0 36 9-44 106-143 (387)
370 PF03721 UDPG_MGDP_dh_N: UDP-g 23.1 93 0.002 23.8 3.0 32 10-46 2-33 (185)
371 KOG3062 RNA polymerase II elon 23.1 2E+02 0.0043 23.5 4.8 30 9-38 2-31 (281)
372 PRK07102 short chain dehydroge 23.1 86 0.0019 24.3 2.9 21 25-45 14-34 (243)
373 TIGR01082 murC UDP-N-acetylmur 23.1 91 0.002 27.2 3.2 20 25-44 12-31 (448)
374 COG1066 Sms Predicted ATP-depe 23.1 1.6E+02 0.0034 26.2 4.5 41 10-51 95-135 (456)
375 PLN02583 cinnamoyl-CoA reducta 23.0 85 0.0018 25.6 2.9 20 25-44 19-38 (297)
376 PRK14478 nitrogenase molybdenu 23.0 1E+02 0.0022 27.4 3.6 34 101-143 382-415 (475)
377 PTZ00254 40S ribosomal protein 22.9 1.2E+02 0.0025 24.8 3.5 30 119-148 119-150 (249)
378 COG2084 MmsB 3-hydroxyisobutyr 22.9 87 0.0019 26.1 2.9 24 25-48 12-35 (286)
379 PRK06851 hypothetical protein; 22.9 2E+02 0.0043 24.9 5.2 44 8-51 214-257 (367)
380 PF00148 Oxidored_nitro: Nitro 22.9 1.6E+02 0.0035 25.1 4.7 40 118-157 194-235 (398)
381 PRK05653 fabG 3-ketoacyl-(acyl 22.8 89 0.0019 23.9 2.9 32 10-45 7-38 (246)
382 TIGR02655 circ_KaiC circadian 22.8 1.7E+02 0.0038 26.0 5.0 44 9-52 264-307 (484)
383 PF05991 NYN_YacP: YacP-like N 22.8 1.1E+02 0.0023 23.1 3.2 32 23-54 81-112 (166)
384 PF06564 YhjQ: YhjQ protein; 22.6 2E+02 0.0043 23.3 4.8 37 9-45 2-39 (243)
385 PLN02828 formyltetrahydrofolat 22.6 2.7E+02 0.0058 22.9 5.7 47 99-147 82-131 (268)
386 cd01974 Nitrogenase_MoFe_beta 22.5 1.5E+02 0.0034 25.9 4.6 37 101-146 366-402 (435)
387 TIGR01285 nifN nitrogenase mol 22.5 1.9E+02 0.004 25.4 5.1 40 118-157 236-276 (432)
388 PRK06505 enoyl-(acyl carrier p 22.5 2E+02 0.0042 23.1 4.9 35 8-43 6-40 (271)
389 cd01916 ACS_1 Acetyl-CoA synth 22.5 93 0.002 29.5 3.3 34 117-150 264-299 (731)
390 PF13407 Peripla_BP_4: Peripla 22.5 2.2E+02 0.0048 22.0 5.2 32 117-148 54-89 (257)
391 TIGR03029 EpsG chain length de 22.5 4.1E+02 0.0088 21.2 15.3 38 8-45 102-141 (274)
392 KOG2585 Uncharacterized conser 22.4 1.8E+02 0.004 25.8 4.8 35 8-45 266-302 (453)
393 PF09334 tRNA-synt_1g: tRNA sy 22.4 63 0.0014 28.0 2.1 27 20-46 17-46 (391)
394 PF01738 DLH: Dienelactone hyd 22.4 2.2E+02 0.0047 21.7 5.0 34 8-42 14-47 (218)
395 PRK13932 stationary phase surv 22.4 2E+02 0.0044 23.5 4.9 41 6-49 3-44 (257)
396 COG3349 Uncharacterized conser 22.4 76 0.0016 28.5 2.6 22 24-45 11-32 (485)
397 PRK07454 short chain dehydroge 22.3 93 0.002 24.1 2.9 22 24-45 18-39 (241)
398 TIGR02137 HSK-PSP phosphoserin 22.3 1.2E+02 0.0026 23.5 3.5 42 97-144 69-110 (203)
399 PRK10818 cell division inhibit 22.2 1.8E+02 0.0038 23.3 4.6 30 17-46 12-41 (270)
400 PRK15062 hydrogenase isoenzyme 22.2 5.2E+02 0.011 22.4 7.9 64 97-167 171-240 (364)
401 PRK07666 fabG 3-ketoacyl-(acyl 22.2 95 0.0021 24.0 2.9 22 24-45 19-40 (239)
402 PF13561 adh_short_C2: Enoyl-( 22.0 81 0.0018 24.6 2.5 22 26-47 10-31 (241)
403 PF01497 Peripla_BP_2: Peripla 21.9 2.5E+02 0.0055 21.5 5.3 33 118-150 60-94 (238)
404 PRK07067 sorbitol dehydrogenas 21.9 94 0.002 24.3 2.9 33 10-45 7-39 (257)
405 cd06219 DHOD_e_trans_like1 FAD 21.8 1.2E+02 0.0027 24.0 3.6 38 9-48 98-135 (248)
406 TIGR00959 ffh signal recogniti 21.8 1.8E+02 0.0039 25.7 4.8 40 10-49 101-141 (428)
407 PRK06179 short chain dehydroge 21.8 94 0.002 24.5 2.9 32 11-45 6-37 (270)
408 PRK07890 short chain dehydroge 21.8 95 0.0021 24.2 2.9 21 24-44 17-37 (258)
409 TIGR03772 anch_rpt_subst ancho 21.8 1.9E+02 0.0042 25.9 5.0 41 100-146 408-452 (479)
410 PRK12829 short chain dehydroge 21.8 96 0.0021 24.2 2.9 33 9-45 12-44 (264)
411 PRK08265 short chain dehydroge 21.7 2.2E+02 0.0049 22.4 5.1 32 10-44 7-38 (261)
412 PF02737 3HCDH_N: 3-hydroxyacy 21.7 95 0.0021 23.6 2.8 22 26-47 12-33 (180)
413 PRK12409 D-amino acid dehydrog 21.7 87 0.0019 26.7 2.8 29 10-43 3-31 (410)
414 PRK06101 short chain dehydroge 21.7 97 0.0021 24.1 2.9 21 25-45 14-34 (240)
415 PRK04940 hypothetical protein; 21.7 2.5E+02 0.0054 21.7 5.0 34 119-152 61-95 (180)
416 COG0552 FtsY Signal recognitio 21.7 2.1E+02 0.0045 24.5 4.9 41 9-49 140-180 (340)
417 PRK05579 bifunctional phosphop 21.6 99 0.0022 26.9 3.1 20 26-45 218-237 (399)
418 PF02780 Transketolase_C: Tran 21.6 1.9E+02 0.0042 20.1 4.2 35 8-44 9-43 (124)
419 PF10727 Rossmann-like: Rossma 21.5 1.2E+02 0.0025 21.9 3.0 37 6-47 8-44 (127)
420 TIGR01281 DPOR_bchL light-inde 21.5 1.9E+02 0.0042 23.0 4.7 35 11-45 3-37 (268)
421 KOG0332 ATP-dependent RNA heli 21.5 81 0.0018 27.6 2.5 24 24-47 342-365 (477)
422 PF08897 DUF1841: Domain of un 21.5 66 0.0014 23.7 1.7 18 17-34 57-74 (137)
423 PRK07533 enoyl-(acyl carrier p 21.5 2.5E+02 0.0054 22.1 5.3 35 8-44 9-44 (258)
424 PF01370 Epimerase: NAD depend 21.5 1.3E+02 0.0027 23.0 3.5 25 25-49 11-35 (236)
425 cd03466 Nitrogenase_NifN_2 Nit 21.4 2.2E+02 0.0049 24.8 5.3 40 118-157 222-265 (429)
426 PRK05557 fabG 3-ketoacyl-(acyl 21.4 1E+02 0.0022 23.7 2.9 22 24-45 17-38 (248)
427 TIGR03649 ergot_EASG ergot alk 21.3 83 0.0018 25.2 2.5 27 18-46 7-33 (285)
428 cd00806 TrpRS_core catalytic c 21.3 1E+02 0.0022 25.3 3.1 27 20-46 15-41 (280)
429 PRK06180 short chain dehydroge 21.3 97 0.0021 24.7 2.9 26 18-45 12-37 (277)
430 cd00316 Oxidoreductase_nitroge 21.2 1.9E+02 0.004 24.6 4.8 41 118-158 202-243 (399)
431 PF02702 KdpD: Osmosensitive K 21.2 2E+02 0.0043 22.9 4.4 38 8-45 5-42 (211)
432 TIGR03840 TMPT_Se_Te thiopurin 21.2 1.2E+02 0.0026 23.8 3.3 29 12-46 38-66 (213)
433 TIGR00640 acid_CoA_mut_C methy 21.1 3E+02 0.0064 19.9 5.1 44 8-51 2-45 (132)
434 PRK03359 putative electron tra 21.1 1.7E+02 0.0036 23.9 4.2 31 118-148 112-148 (256)
435 PRK12377 putative replication 21.0 1.6E+02 0.0035 23.8 4.0 43 9-51 102-144 (248)
436 PRK08277 D-mannonate oxidoredu 21.0 2.2E+02 0.0048 22.5 5.0 33 9-44 10-42 (278)
437 PRK12823 benD 1,6-dihydroxycyc 21.0 1E+02 0.0022 24.2 2.9 33 10-45 9-41 (260)
438 cd01020 TroA_b Metal binding p 21.0 2.3E+02 0.0049 22.9 5.0 39 101-145 195-238 (264)
439 PTZ00318 NADH dehydrogenase-li 20.9 1.4E+02 0.0031 25.8 4.0 35 8-47 10-44 (424)
440 PRK07819 3-hydroxybutyryl-CoA 20.9 1.3E+02 0.0028 24.7 3.5 34 8-46 5-38 (286)
441 PF00072 Response_reg: Respons 20.9 2.5E+02 0.0054 18.3 4.6 34 117-150 42-82 (112)
442 cd06559 Endonuclease_V Endonuc 20.7 1E+02 0.0022 24.4 2.7 43 99-148 81-130 (208)
443 CHL00072 chlL photochlorophyll 20.7 2.2E+02 0.0048 23.4 4.9 37 10-46 2-38 (290)
444 PRK00784 cobyric acid synthase 20.7 1.8E+02 0.0039 26.0 4.6 35 10-44 4-39 (488)
445 TIGR00521 coaBC_dfp phosphopan 20.7 1.2E+02 0.0026 26.4 3.4 42 9-51 4-45 (390)
446 PRK10416 signal recognition pa 20.7 2.1E+02 0.0046 24.0 4.8 40 9-48 115-154 (318)
447 TIGR00639 PurN phosphoribosylg 20.6 3.6E+02 0.0079 20.7 5.8 46 100-147 13-58 (190)
448 PRK01077 cobyrinic acid a,c-di 20.5 3E+02 0.0064 24.3 5.9 36 9-44 4-40 (451)
449 PRK10565 putative carbohydrate 20.5 1.5E+02 0.0031 26.8 4.0 33 9-44 61-95 (508)
450 TIGR01377 soxA_mon sarcosine o 20.5 98 0.0021 25.9 2.8 21 24-44 11-31 (380)
451 PRK06114 short chain dehydroge 20.4 2E+02 0.0043 22.5 4.5 32 10-44 9-40 (254)
452 PF03537 Glyco_hydro_114: Glyc 20.4 1.5E+02 0.0033 19.0 3.1 33 117-149 25-59 (74)
453 PRK07364 2-octaprenyl-6-methox 20.4 94 0.002 26.4 2.8 31 8-43 18-48 (415)
454 PRK13230 nitrogenase reductase 20.3 2.3E+02 0.005 22.8 4.9 37 9-45 2-38 (279)
455 PRK09435 membrane ATPase/prote 20.3 2.7E+02 0.0059 23.6 5.4 41 8-48 56-96 (332)
456 TIGR01969 minD_arch cell divis 20.3 2.1E+02 0.0046 22.2 4.6 30 17-46 10-39 (251)
457 cd01019 ZnuA Zinc binding prot 20.2 2.4E+02 0.0051 23.1 5.0 44 100-149 216-261 (286)
458 PRK06138 short chain dehydroge 20.2 1.1E+02 0.0023 23.8 2.9 20 25-44 18-37 (252)
459 PRK09072 short chain dehydroge 20.2 1.1E+02 0.0023 24.1 2.9 21 25-45 18-38 (263)
460 COG0381 WecB UDP-N-acetylgluco 20.2 2E+02 0.0043 25.1 4.6 117 8-148 3-125 (383)
461 PRK07577 short chain dehydroge 20.1 1.1E+02 0.0024 23.4 2.9 21 25-45 16-36 (234)
462 PRK05642 DNA replication initi 20.1 1.8E+02 0.0038 23.1 4.1 37 9-47 46-84 (234)
463 PF02571 CbiJ: Precorrin-6x re 20.0 2.2E+02 0.0047 23.1 4.6 36 10-51 2-37 (249)
464 TIGR02069 cyanophycinase cyano 20.0 3.2E+02 0.007 22.0 5.6 41 5-45 25-66 (250)
No 1
>PLN02410 UDP-glucoronosyl/UDP-glucosyl transferase family protein
Probab=99.94 E-value=7.3e-26 Score=197.00 Aligned_cols=153 Identities=36% Similarity=0.511 Sum_probs=118.9
Q ss_pred CCCCCCCCceEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEcCCchhhhhhhccCCCccCCCCCceeEecCCCCCCCCC
Q 029508 1 MDSAGARKAHAVCVPYPAQGHVSPMMQVAKLLHSKGFHITFVNTEFNHRRLIRSKGPEYVKGLPDFRFETIPDGLPPSDR 80 (192)
Q Consensus 1 m~~~~~~~~~Il~~p~p~~GH~~P~l~La~~La~rGh~VT~it~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~~~ 80 (192)
|++.+ .+.||+++|+|++||++||++|||+|++||+.|||++++.+..+. . ...++|++..+|+++|+++.
T Consensus 1 ~~~~~-~~~HVvlvPfpaqGHi~P~l~LAk~La~~G~~VT~v~T~~n~~~~--~------~~~~~i~~~~ip~glp~~~~ 71 (451)
T PLN02410 1 MEEKP-ARRRVVLVPVPAQGHISPMMQLAKTLHLKGFSITIAQTKFNYFSP--S------DDFTDFQFVTIPESLPESDF 71 (451)
T ss_pred CCcCC-CCCEEEEECCCccccHHHHHHHHHHHHcCCCEEEEEeCccccccc--c------cCCCCeEEEeCCCCCCcccc
Confidence 67555 477999999999999999999999999999999999999764211 0 11135899999998886422
Q ss_pred CCCCCHHHHHHHHHHhCcHHHHHHHHHhhcCCCCCCCCeEEEEeCCCcchHHHHHHHhCCceEEecCCchHHHHHHHhHH
Q 029508 81 DATQDVPALSDSIRKNGLAPFLELLGKLNSSADDQVPPVTCVVSDGIMGFGRKAAQMLGILDIQFWTASACGMMGYLQHV 160 (192)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~d~vI~D~~~~~~~~vA~~lgIP~i~~~t~~a~~~~~~~~lp 160 (192)
+.. ....++..+...+.+.++++++++..+ . ..+++|||+|+|++|+.++|+++|||++.||+++++.++++++++
T Consensus 72 ~~~-~~~~~~~~~~~~~~~~~~~~L~~l~~~-~--~~p~~cVI~D~f~~Wa~dvA~~lgIP~v~F~t~~a~~~~~~~~~~ 147 (451)
T PLN02410 72 KNL-GPIEFLHKLNKECQVSFKDCLGQLVLQ-Q--GNEIACVVYDEFMYFAEAAAKEFKLPNVIFSTTSATAFVCRSVFD 147 (451)
T ss_pred ccc-CHHHHHHHHHHHhHHHHHHHHHHHHhc-c--CCCcEEEEECCcchHHHHHHHHcCCCEEEEEccCHHHHHHHHHHH
Confidence 222 223455555545678888898876321 1 146899999999999999999999999999999999999999888
Q ss_pred HHHHCC
Q 029508 161 ELLKRG 166 (192)
Q Consensus 161 ~l~~~~ 166 (192)
.+...+
T Consensus 148 ~~~~~~ 153 (451)
T PLN02410 148 KLYANN 153 (451)
T ss_pred HHHhcc
Confidence 776543
No 2
>PLN02562 UDP-glycosyltransferase
Probab=99.94 E-value=2.5e-25 Score=193.73 Aligned_cols=149 Identities=28% Similarity=0.464 Sum_probs=118.8
Q ss_pred CCCceEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEcCCchhhhhhhccCCCccCCCCCceeEecCCCCCCCCCCCCCC
Q 029508 6 ARKAHAVCVPYPAQGHVSPMMQVAKLLHSKGFHITFVNTEFNHRRLIRSKGPEYVKGLPDFRFETIPDGLPPSDRDATQD 85 (192)
Q Consensus 6 ~~~~~Il~~p~p~~GH~~P~l~La~~La~rGh~VT~it~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~~~~~~~~ 85 (192)
+.+.||+++|+|++||++||++|||+|++||++||+++++.+.+++.... ...++|+++.+|++++++. ..+
T Consensus 4 ~~~~HVVlvPfPaqGHi~PmL~LAk~Las~G~~VT~vtt~~~~~~~~~~~-----~~~~~i~~v~lp~g~~~~~---~~~ 75 (448)
T PLN02562 4 TQRPKIILVPYPAQGHVTPMLKLASAFLSRGFEPVVITPEFIHRRISATL-----DPKLGITFMSISDGQDDDP---PRD 75 (448)
T ss_pred CCCcEEEEEcCccccCHHHHHHHHHHHHhCCCEEEEEeCcchhhhhhhcc-----CCCCCEEEEECCCCCCCCc---ccc
Confidence 34679999999999999999999999999999999999998876653221 1113599999998775421 223
Q ss_pred HHHHHHHHHHhCcHHHHHHHHHhhcCCCCCCCCeEEEEeCCCcchHHHHHHHhCCceEEecCCchHHHHHHHhHHHHHHC
Q 029508 86 VPALSDSIRKNGLAPFLELLGKLNSSADDQVPPVTCVVSDGIMGFGRKAAQMLGILDIQFWTASACGMMGYLQHVELLKR 165 (192)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~d~vI~D~~~~~~~~vA~~lgIP~i~~~t~~a~~~~~~~~lp~l~~~ 165 (192)
+..+...+...+.+.++++++++.. ..+++|||+|++++|+.++|+++|||++.||++++..++++++++.+...
T Consensus 76 ~~~l~~a~~~~~~~~l~~ll~~l~~-----~~pv~cvI~D~~~~w~~~vA~~~giP~~~f~~~~a~~~~~~~~~~~~~~~ 150 (448)
T PLN02562 76 FFSIENSMENTMPPQLERLLHKLDE-----DGEVACMVVDLLASWAIGVADRCGVPVAGFWPVMLAAYRLIQAIPELVRT 150 (448)
T ss_pred HHHHHHHHHHhchHHHHHHHHHhcC-----CCCcEEEEECCccHhHHHHHHHhCCCEEEEechhHHHHHHHHHHHHHhhc
Confidence 4445555554578889999988643 13579999999999999999999999999999999999999999887665
Q ss_pred CC
Q 029508 166 GI 167 (192)
Q Consensus 166 ~~ 167 (192)
+.
T Consensus 151 ~~ 152 (448)
T PLN02562 151 GL 152 (448)
T ss_pred cc
Confidence 43
No 3
>PLN02173 UDP-glucosyl transferase family protein
Probab=99.94 E-value=1.5e-25 Score=194.60 Aligned_cols=141 Identities=28% Similarity=0.469 Sum_probs=112.8
Q ss_pred CCceEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEcCCchhhhhhhccCCCccCCCCCceeEecCCCCCCCCCCCCCCH
Q 029508 7 RKAHAVCVPYPAQGHVSPMMQVAKLLHSKGFHITFVNTEFNHRRLIRSKGPEYVKGLPDFRFETIPDGLPPSDRDATQDV 86 (192)
Q Consensus 7 ~~~~Il~~p~p~~GH~~P~l~La~~La~rGh~VT~it~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~ 86 (192)
.+.||+++|+|++||++||++|||+|+++|+.||+++|+.+.+++... ..++|+++.+|+++|++..+...+.
T Consensus 4 ~~~hvv~~P~paqGHi~P~l~lAk~La~~G~~vT~v~t~~~~~~~~~~-------~~~~i~~~~ipdglp~~~~~~~~~~ 76 (449)
T PLN02173 4 MRGHVLAVPFPSQGHITPIRQFCKRLHSKGFKTTHTLTTFIFNTIHLD-------PSSPISIATISDGYDQGGFSSAGSV 76 (449)
T ss_pred CCcEEEEecCcccccHHHHHHHHHHHHcCCCEEEEEECCchhhhcccC-------CCCCEEEEEcCCCCCCcccccccCH
Confidence 567999999999999999999999999999999999999876554211 1135999999998886322223345
Q ss_pred HHHHHHHHHhCcHHHHHHHHHhhcCCCCCCCCeEEEEeCCCcchHHHHHHHhCCceEEecCCchHHHHHHHh
Q 029508 87 PALSDSIRKNGLAPFLELLGKLNSSADDQVPPVTCVVSDGIMGFGRKAAQMLGILDIQFWTASACGMMGYLQ 158 (192)
Q Consensus 87 ~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~d~vI~D~~~~~~~~vA~~lgIP~i~~~t~~a~~~~~~~~ 158 (192)
..++..+.+.+.+.++++++++.. .+ .+++|||+|+|++|+.++|+++|||++.||+++++.+++|++
T Consensus 77 ~~~~~~~~~~~~~~~~~~l~~~~~--~~--~Pv~cvV~D~f~~Wa~dVA~elgIP~v~F~~~~a~~~~~~~~ 144 (449)
T PLN02173 77 PEYLQNFKTFGSKTVADIIRKHQS--TD--NPITCIVYDSFMPWALDLAREFGLAAAPFFTQSCAVNYINYL 144 (449)
T ss_pred HHHHHHHHHhhhHHHHHHHHHhhc--cC--CCceEEEECCcchhHHHHHHHhCCCEEEEechHHHHHHHHHh
Confidence 566666665678899999987642 11 345999999999999999999999999999999998877764
No 4
>PLN02555 limonoid glucosyltransferase
Probab=99.94 E-value=2.5e-25 Score=194.73 Aligned_cols=154 Identities=27% Similarity=0.462 Sum_probs=118.3
Q ss_pred CCCCCCCCceEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEcCCchhhhhhhccCC-Cc--c-CCCCCceeEecCCCCC
Q 029508 1 MDSAGARKAHAVCVPYPAQGHVSPMMQVAKLLHSKGFHITFVNTEFNHRRLIRSKGP-EY--V-KGLPDFRFETIPDGLP 76 (192)
Q Consensus 1 m~~~~~~~~~Il~~p~p~~GH~~P~l~La~~La~rGh~VT~it~~~~~~~~~~~~~~-~~--~-~~~~~i~~~~l~~~~~ 76 (192)
|+++.. +.||+++|+|++||++||++|||+|++||..||+++|+.+..++.++... .. . .....++|..+|+++|
T Consensus 1 ~~~~~~-~~HVv~~PfpaqGHi~Pml~lA~~La~~G~~vT~v~T~~~~~~~~~a~~~~~~~~~~~~~~~i~~~~~pdglp 79 (480)
T PLN02555 1 MESESS-LVHVMLVSFPGQGHVNPLLRLGKLLASKGLLVTFVTTESWGKKMRQANKIQDGVLKPVGDGFIRFEFFEDGWA 79 (480)
T ss_pred CCCCCC-CCEEEEECCcccccHHHHHHHHHHHHhCCCeEEEEeccchhhhhhccccccccccccCCCCeEEEeeCCCCCC
Confidence 788776 67999999999999999999999999999999999999877655321100 00 0 0112377777888887
Q ss_pred CCCCCCCCCHHHHHHHHHHhCcHHHHHHHHHhhcCCCCCCCCeEEEEeCCCcchHHHHHHHhCCceEEecCCchHHHHHH
Q 029508 77 PSDRDATQDVPALSDSIRKNGLAPFLELLGKLNSSADDQVPPVTCVVSDGIMGFGRKAAQMLGILDIQFWTASACGMMGY 156 (192)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~d~vI~D~~~~~~~~vA~~lgIP~i~~~t~~a~~~~~~ 156 (192)
++. +...+...++..+.+.+.+.++++++++.+ .+ .+++|||+|+|++|+.++|+++|||+++||+++++.+++|
T Consensus 80 ~~~-~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~--~~--~pv~ciV~D~~~~wa~~vA~~~gIP~~~F~t~~a~~~~~~ 154 (480)
T PLN02555 80 EDD-PRRQDLDLYLPQLELVGKREIPNLVKRYAE--QG--RPVSCLINNPFIPWVCDVAEELGIPSAVLWVQSCACFSAY 154 (480)
T ss_pred CCc-ccccCHHHHHHHHHHhhhHHHHHHHHHHhc--cC--CCceEEEECCcchHHHHHHHHcCCCeEEeecccHHHHHHH
Confidence 642 122344455565555567889999987642 11 3569999999999999999999999999999999999999
Q ss_pred HhHH
Q 029508 157 LQHV 160 (192)
Q Consensus 157 ~~lp 160 (192)
++++
T Consensus 155 ~~~~ 158 (480)
T PLN02555 155 YHYY 158 (480)
T ss_pred HHHh
Confidence 9885
No 5
>PLN02670 transferase, transferring glycosyl groups
Probab=99.93 E-value=1.2e-24 Score=189.89 Aligned_cols=147 Identities=25% Similarity=0.327 Sum_probs=111.6
Q ss_pred CCceEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEcCCchhhhhhhccCCCccCCCCCceeEecC----CCCCCCCCCC
Q 029508 7 RKAHAVCVPYPAQGHVSPMMQVAKLLHSKGFHITFVNTEFNHRRLIRSKGPEYVKGLPDFRFETIP----DGLPPSDRDA 82 (192)
Q Consensus 7 ~~~~Il~~p~p~~GH~~P~l~La~~La~rGh~VT~it~~~~~~~~~~~~~~~~~~~~~~i~~~~l~----~~~~~~~~~~ 82 (192)
.+.||+++|+|++||++||++|||+|++||+.||+++++.+..++..... ...+.|+++.+| +++|++. +.
T Consensus 5 ~~~HVvl~P~paqGHi~P~l~LAk~La~~G~~vT~v~t~~n~~~~~~~~~----~~~~~i~~~~lp~p~~dglp~~~-~~ 79 (472)
T PLN02670 5 EVLHVAMFPWLAMGHLIPFLRLSKLLAQKGHKISFISTPRNLHRLPKIPS----QLSSSITLVSFPLPSVPGLPSSA-ES 79 (472)
T ss_pred CCcEEEEeCChhhhHHHHHHHHHHHHHhCCCEEEEEeCCchHHhhhhccc----cCCCCeeEEECCCCccCCCCCCc-cc
Confidence 36799999999999999999999999999999999999988766532100 011358898887 5676542 11
Q ss_pred CCCHH----HHHHHHHHhCcHHHHHHHHHhhcCCCCCCCCeEEEEeCCCcchHHHHHHHhCCceEEecCCchHHHHHHHh
Q 029508 83 TQDVP----ALSDSIRKNGLAPFLELLGKLNSSADDQVPPVTCVVSDGIMGFGRKAAQMLGILDIQFWTASACGMMGYLQ 158 (192)
Q Consensus 83 ~~~~~----~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~d~vI~D~~~~~~~~vA~~lgIP~i~~~t~~a~~~~~~~~ 158 (192)
..+.. .++....+.+.+.++++++++ +++|||+|+|++|+.++|+++|||+++|+++++..+++|++
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~---------~~~cvI~D~f~~wa~~vA~~~gIP~~~f~~~~a~~~~~~~~ 150 (472)
T PLN02670 80 STDVPYTKQQLLKKAFDLLEPPLTTFLETS---------KPDWIIYDYASHWLPSIAAELGISKAFFSLFTAATLSFIGP 150 (472)
T ss_pred ccccchhhHHHHHHHHHHhHHHHHHHHHhC---------CCcEEEECCcchhHHHHHHHcCCCEEEEehhhHHHHHHHhh
Confidence 22221 233333444677888888752 57999999999999999999999999999999999999887
Q ss_pred HHHHHHCCC
Q 029508 159 HVELLKRGI 167 (192)
Q Consensus 159 lp~l~~~~~ 167 (192)
++.+...+.
T Consensus 151 ~~~~~~~~~ 159 (472)
T PLN02670 151 PSSLMEGGD 159 (472)
T ss_pred hHhhhhccc
Confidence 765554444
No 6
>PLN02863 UDP-glucoronosyl/UDP-glucosyl transferase family protein
Probab=99.93 E-value=1.7e-24 Score=189.65 Aligned_cols=147 Identities=22% Similarity=0.334 Sum_probs=110.4
Q ss_pred CCCCC-CCCceEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEcCCchhhhhhhccCCCccCCCCCceeEecCC----CC
Q 029508 1 MDSAG-ARKAHAVCVPYPAQGHVSPMMQVAKLLHSKGFHITFVNTEFNHRRLIRSKGPEYVKGLPDFRFETIPD----GL 75 (192)
Q Consensus 1 m~~~~-~~~~~Il~~p~p~~GH~~P~l~La~~La~rGh~VT~it~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~----~~ 75 (192)
|.+.+ .++.||+++|||++||++||++|||+|++||+.||+++|+.+.+++.... .+.+.++++.+|. ++
T Consensus 1 ~~~~~~~~~~HVvl~PfpaqGHi~P~l~LAk~La~~G~~VTfv~T~~n~~~~~~~~-----~~~~~i~~~~lp~P~~~~l 75 (477)
T PLN02863 1 MTELNKPAGTHVLVFPFPAQGHMIPLLDLTHRLALRGLTITVLVTPKNLPFLNPLL-----SKHPSIETLVLPFPSHPSI 75 (477)
T ss_pred CcccccCCCCEEEEecCcccchHHHHHHHHHHHHhCCCEEEEEeCCCcHHHHhhhc-----ccCCCeeEEeCCCCCcCCC
Confidence 56654 45899999999999999999999999999999999999999887663221 1123577776542 55
Q ss_pred CCCCCCCCCC----HH-HHHHHHHHhCcHHHHHHHHHhhcCCCCCCCCeEEEEeCCCcchHHHHHHHhCCceEEecCCch
Q 029508 76 PPSDRDATQD----VP-ALSDSIRKNGLAPFLELLGKLNSSADDQVPPVTCVVSDGIMGFGRKAAQMLGILDIQFWTASA 150 (192)
Q Consensus 76 ~~~~~~~~~~----~~-~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~d~vI~D~~~~~~~~vA~~lgIP~i~~~t~~a 150 (192)
|++. +...+ .. .+..... .+.+.+++++++.. .+++|||+|+|++|+.++|+++|||++.||++++
T Consensus 76 PdG~-~~~~~~~~~~~~~~~~a~~-~~~~~~~~~l~~~~-------~~p~cvI~D~f~~Wa~dVA~e~GIP~~~F~t~sA 146 (477)
T PLN02863 76 PSGV-ENVKDLPPSGFPLMIHALG-ELYAPLLSWFRSHP-------SPPVAIISDMFLGWTQNLACQLGIRRFVFSPSGA 146 (477)
T ss_pred CCCC-cChhhcchhhHHHHHHHHH-HhHHHHHHHHHhCC-------CCCeEEEEcCchHhHHHHHHHcCCCEEEEeccCH
Confidence 5542 11112 11 2233333 34667777777631 3679999999999999999999999999999999
Q ss_pred HHHHHHHhHHH
Q 029508 151 CGMMGYLQHVE 161 (192)
Q Consensus 151 ~~~~~~~~lp~ 161 (192)
+.+++|++++.
T Consensus 147 ~~~~~~~~~~~ 157 (477)
T PLN02863 147 MALSIMYSLWR 157 (477)
T ss_pred HHHHHHHHHhh
Confidence 99999999864
No 7
>PLN02210 UDP-glucosyl transferase
Probab=99.92 E-value=2.3e-24 Score=187.95 Aligned_cols=144 Identities=24% Similarity=0.365 Sum_probs=113.8
Q ss_pred CCCCCCCCceEEEEcCCCccChHHHHHHHHH--HHhCCCeEEEEcCCchhhhhhhccCCCccCCCCCceeEecCCCCCCC
Q 029508 1 MDSAGARKAHAVCVPYPAQGHVSPMMQVAKL--LHSKGFHITFVNTEFNHRRLIRSKGPEYVKGLPDFRFETIPDGLPPS 78 (192)
Q Consensus 1 m~~~~~~~~~Il~~p~p~~GH~~P~l~La~~--La~rGh~VT~it~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~ 78 (192)
|++..+++.||+++|+|++||++||++||++ |++||++|||++++.+.+++ +..+ ...+.+++..+++++|++
T Consensus 1 ~~~~~~~~~hvv~~P~pa~GHi~P~l~La~~L~L~~~G~~VT~v~t~~~~~~~-~~~~----~~~~~~~~~~~~~glp~~ 75 (456)
T PLN02210 1 MGSSEGQETHVLMVTLAFQGHINPMLKLAKHLSLSSKNLHFTLATTEQARDLL-STVE----KPRRPVDLVFFSDGLPKD 75 (456)
T ss_pred CCCcCCCCCEEEEeCCcccccHHHHHHHHHHHHhhcCCcEEEEEeccchhhhh-cccc----CCCCceEEEECCCCCCCC
Confidence 7777777899999999999999999999999 55999999999999887655 3222 112357888788888764
Q ss_pred CCCCCCCHHHHHHHHHHhCcHHHHHHHHHhhcCCCCCCCCeEEEEeCCCcchHHHHHHHhCCceEEecCCchHHHHHHHh
Q 029508 79 DRDATQDVPALSDSIRKNGLAPFLELLGKLNSSADDQVPPVTCVVSDGIMGFGRKAAQMLGILDIQFWTASACGMMGYLQ 158 (192)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~d~vI~D~~~~~~~~vA~~lgIP~i~~~t~~a~~~~~~~~ 158 (192)
. . .+...++..+.+.+.+.+++++++ .++||||+|.+++|+.++|+++|||++.||+.++..++++++
T Consensus 76 ~-~--~~~~~~~~~~~~~~~~~l~~~l~~---------~~~~~vI~D~~~~w~~~vA~~lgIP~~~f~~~sa~~~~~~~~ 143 (456)
T PLN02210 76 D-P--RAPETLLKSLNKVGAKNLSKIIEE---------KRYSCIISSPFTPWVPAVAAAHNIPCAILWIQACGAYSVYYR 143 (456)
T ss_pred c-c--cCHHHHHHHHHHhhhHHHHHHHhc---------CCCcEEEECCcchhHHHHHHHhCCCEEEEecccHHHHHHHHh
Confidence 2 1 233345555544456667777754 369999999999999999999999999999999999999888
Q ss_pred HHH
Q 029508 159 HVE 161 (192)
Q Consensus 159 lp~ 161 (192)
++.
T Consensus 144 ~~~ 146 (456)
T PLN02210 144 YYM 146 (456)
T ss_pred hhh
Confidence 753
No 8
>PLN02152 indole-3-acetate beta-glucosyltransferase
Probab=99.92 E-value=3.3e-24 Score=186.57 Aligned_cols=145 Identities=25% Similarity=0.404 Sum_probs=111.9
Q ss_pred CceEEEEcCCCccChHHHHHHHHHHHh-CCCeEEEEcCCch-hhhhhhccCCCccCCCCCceeEecCCCCCCCCCCCCCC
Q 029508 8 KAHAVCVPYPAQGHVSPMMQVAKLLHS-KGFHITFVNTEFN-HRRLIRSKGPEYVKGLPDFRFETIPDGLPPSDRDATQD 85 (192)
Q Consensus 8 ~~~Il~~p~p~~GH~~P~l~La~~La~-rGh~VT~it~~~~-~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~~~~~~~~ 85 (192)
+.||+++|+|++||+|||++|||+|++ +|+.|||++++.+ .+++... ....++++++.+++++|++......+
T Consensus 3 ~~hvv~~P~p~qGHi~P~l~La~~La~~~G~~vT~v~t~~~~~~~~~~~-----~~~~~~i~~~~i~dglp~g~~~~~~~ 77 (455)
T PLN02152 3 PPHFLLVTFPAQGHVNPSLRFARRLIKTTGTRVTFATCLSVIHRSMIPN-----HNNVENLSFLTFSDGFDDGVISNTDD 77 (455)
T ss_pred CcEEEEecCcccccHHHHHHHHHHHhhCCCcEEEEEeccchhhhhhhcc-----CCCCCCEEEEEcCCCCCCcccccccc
Confidence 459999999999999999999999996 7999999999864 2222111 01123599999998887642122334
Q ss_pred HHHHHHHHHHhCcHHHHHHHHHhhcCCCCCCCCeEEEEeCCCcchHHHHHHHhCCceEEecCCchHHHHHHHhHHH
Q 029508 86 VPALSDSIRKNGLAPFLELLGKLNSSADDQVPPVTCVVSDGIMGFGRKAAQMLGILDIQFWTASACGMMGYLQHVE 161 (192)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~d~vI~D~~~~~~~~vA~~lgIP~i~~~t~~a~~~~~~~~lp~ 161 (192)
...++....+.+.+.++++++++.+ .+ .+++|||+|++++|+.++|+++|||++.||+++++.+++|++++.
T Consensus 78 ~~~~~~~~~~~~~~~l~~~l~~l~~--~~--~pv~ciV~D~~~~wa~dvA~~lgIP~~~f~t~~a~~~~~~~~~~~ 149 (455)
T PLN02152 78 VQNRLVNFERNGDKALSDFIEANLN--GD--SPVTCLIYTILPNWAPKVARRFHLPSVLLWIQPAFVFDIYYNYST 149 (455)
T ss_pred HHHHHHHHHHhccHHHHHHHHHhhc--cC--CCceEEEECCccHhHHHHHHHhCCCEEEEECccHHHHHHHHHhhc
Confidence 4444444555678899999988642 11 357999999999999999999999999999999999999988763
No 9
>PLN02448 UDP-glycosyltransferase family protein
Probab=99.92 E-value=7.4e-24 Score=185.16 Aligned_cols=147 Identities=32% Similarity=0.493 Sum_probs=117.0
Q ss_pred CCCceEEEEcCCCccChHHHHHHHHHHHhC--CCeEEEEcCCchhhhhhhccCCCccCCCCCceeEecCCCCCCCCCCCC
Q 029508 6 ARKAHAVCVPYPAQGHVSPMMQVAKLLHSK--GFHITFVNTEFNHRRLIRSKGPEYVKGLPDFRFETIPDGLPPSDRDAT 83 (192)
Q Consensus 6 ~~~~~Il~~p~p~~GH~~P~l~La~~La~r--Gh~VT~it~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~~~~~~ 83 (192)
..+.||+++|+|++||++||++||++|++| ||+||+++++.+.+++.+.. ..++++|+.+|+++|++. ...
T Consensus 8 ~~~~hVvlvp~pa~GHi~P~l~LA~~L~~~~~G~~VT~~~t~~~~~~i~~~~------~~~gi~fv~lp~~~p~~~-~~~ 80 (459)
T PLN02448 8 TTSCHVVAMPYPGRGHINPMMNLCKLLASRKPDILITFVVTEEWLGLIGSDP------KPDNIRFATIPNVIPSEL-VRA 80 (459)
T ss_pred CCCcEEEEECCcccccHHHHHHHHHHHHcCCCCcEEEEEeCCchHhHhhccC------CCCCEEEEECCCCCCCcc-ccc
Confidence 347899999999999999999999999999 99999999998877663221 113699999998766531 212
Q ss_pred CCHHHHHHHHHHhCcHHHHHHHHHhhcCCCCCCCCeEEEEeCCCcchHHHHHHHhCCceEEecCCchHHHHHHHhHHHHH
Q 029508 84 QDVPALSDSIRKNGLAPFLELLGKLNSSADDQVPPVTCVVSDGIMGFGRKAAQMLGILDIQFWTASACGMMGYLQHVELL 163 (192)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~d~vI~D~~~~~~~~vA~~lgIP~i~~~t~~a~~~~~~~~lp~l~ 163 (192)
.+...++..+...+.+.++++++++. .++||||+|.+++|+.++|+++|||++.|+++++..++++++++.+.
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~l~~~~-------~~~~~VI~D~~~~wa~~vA~~lgIP~v~f~~~~a~~~~~~~~~~~~~ 153 (459)
T PLN02448 81 ADFPGFLEAVMTKMEAPFEQLLDRLE-------PPVTAIVADTYLFWAVGVGNRRNIPVASLWTMSATFFSVFYHFDLLP 153 (459)
T ss_pred cCHHHHHHHHHHHhHHHHHHHHHhcC-------CCcEEEEECCccHHHHHHHHHhCCCeEEEEhHHHHHHHHHHHhhhhh
Confidence 34444445444346778888888753 36899999999999999999999999999999999999999988765
Q ss_pred HCC
Q 029508 164 KRG 166 (192)
Q Consensus 164 ~~~ 166 (192)
..+
T Consensus 154 ~~~ 156 (459)
T PLN02448 154 QNG 156 (459)
T ss_pred hcc
Confidence 543
No 10
>PLN02534 UDP-glycosyltransferase
Probab=99.91 E-value=2.7e-23 Score=182.26 Aligned_cols=142 Identities=27% Similarity=0.461 Sum_probs=105.6
Q ss_pred CceEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEcCCchhhhhhhccCCCccCCCCCceeEecC-----CCCCCCCCCC
Q 029508 8 KAHAVCVPYPAQGHVSPMMQVAKLLHSKGFHITFVNTEFNHRRLIRSKGPEYVKGLPDFRFETIP-----DGLPPSDRDA 82 (192)
Q Consensus 8 ~~~Il~~p~p~~GH~~P~l~La~~La~rGh~VT~it~~~~~~~~~~~~~~~~~~~~~~i~~~~l~-----~~~~~~~~~~ 82 (192)
+.||+++|+|++||++||++|||.|++||+.||+++++.+..++..........+ ..|+|+.+| +++|++. +.
T Consensus 8 ~~Hvv~vPfpaqGHi~P~l~LAk~La~~G~~vT~v~t~~n~~~~~~~~~~~~~~~-~~i~~~~lp~p~~~dglp~~~-~~ 85 (491)
T PLN02534 8 QLHFVLIPLMAQGHMIPMIDMARLLAERGVIVSLVTTPQNASRFAKTIDRARESG-LPIRLVQIPFPCKEVGLPIGC-EN 85 (491)
T ss_pred CCEEEEECCCCcchHHHHHHHHHHHHhCCCeEEEEECCCcHHHHhhhhhhccccC-CCeEEEEcCCCCccCCCCCCc-cc
Confidence 5699999999999999999999999999999999999988765532211000011 138999887 5777541 11
Q ss_pred CCC-----HH-HHHHHHHHhCcHHHHHHHHHhhcCCCCCCCCeEEEEeCCCcchHHHHHHHhCCceEEecCCchHHHHHH
Q 029508 83 TQD-----VP-ALSDSIRKNGLAPFLELLGKLNSSADDQVPPVTCVVSDGIMGFGRKAAQMLGILDIQFWTASACGMMGY 156 (192)
Q Consensus 83 ~~~-----~~-~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~d~vI~D~~~~~~~~vA~~lgIP~i~~~t~~a~~~~~~ 156 (192)
..+ .. .+.... ..+.+.+++++++.. .+++|||+|+|++|+.++|+++|||+++||+++++.++++
T Consensus 86 ~~~~~~~~~~~~~~~~~-~~l~~~l~~lL~~~~-------~pp~cIV~D~f~~Wa~dVA~~lgIP~v~F~t~~a~~~~~~ 157 (491)
T PLN02534 86 LDTLPSRDLLRKFYDAV-DKLQQPLERFLEQAK-------PPPSCIISDKCLSWTSKTAQRFNIPRIVFHGMCCFSLLSS 157 (491)
T ss_pred cccCCcHHHHHHHHHHH-HHhHHHHHHHHHhcC-------CCCcEEEECCccHHHHHHHHHhCCCeEEEecchHHHHHHH
Confidence 111 21 122222 235678888887531 4689999999999999999999999999999999999887
Q ss_pred HhH
Q 029508 157 LQH 159 (192)
Q Consensus 157 ~~l 159 (192)
+++
T Consensus 158 ~~~ 160 (491)
T PLN02534 158 HNI 160 (491)
T ss_pred HHH
Confidence 665
No 11
>PLN02554 UDP-glycosyltransferase family protein
Probab=99.91 E-value=2.7e-23 Score=182.57 Aligned_cols=151 Identities=21% Similarity=0.247 Sum_probs=104.4
Q ss_pred CceEEEEcCCCccChHHHHHHHHHHHhCC--CeEEEEcCCchhhhhhh-ccCCCccC--CCCCceeEecCCCCCCCCCCC
Q 029508 8 KAHAVCVPYPAQGHVSPMMQVAKLLHSKG--FHITFVNTEFNHRRLIR-SKGPEYVK--GLPDFRFETIPDGLPPSDRDA 82 (192)
Q Consensus 8 ~~~Il~~p~p~~GH~~P~l~La~~La~rG--h~VT~it~~~~~~~~~~-~~~~~~~~--~~~~i~~~~l~~~~~~~~~~~ 82 (192)
|.||+++|+|++||++||++|||+|++|| ..||+++|+.+..++.. ........ ..++|+++.+|++.+... .
T Consensus 2 ~~hvvl~P~paqGHi~P~l~LAk~La~~G~~~~vT~v~t~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lp~~~~~~~-~- 79 (481)
T PLN02554 2 KIELVFIPSPGIGHLRPTVELAKLLVDSDDRLSITVIIIPSRSGDDASSSAYIASLSASSEDRLRYEVISAGDQPTT-E- 79 (481)
T ss_pred ceEEEEeCCcchhhHHHHHHHHHHHHhCCCCEEEEEEeCCCccchhhhhhhhhhhcccCCCCCeEEEEcCCCCCCcc-c-
Confidence 68999999999999999999999999998 88999999876543210 00000001 123599999987653211 1
Q ss_pred CCCHHHHHHHHHHhCcHHHHHHHHHhhcC--CCCCCCCeEEEEeCCCcchHHHHHHHhCCceEEecCCchHHHHHHHhHH
Q 029508 83 TQDVPALSDSIRKNGLAPFLELLGKLNSS--ADDQVPPVTCVVSDGIMGFGRKAAQMLGILDIQFWTASACGMMGYLQHV 160 (192)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~ll~~l~~~--~~~~~~~~d~vI~D~~~~~~~~vA~~lgIP~i~~~t~~a~~~~~~~~lp 160 (192)
..++..++.. +.+.+++.++++... +++ .++++|||+|+|++|+.++|+++|||++.|||++++.++++++++
T Consensus 80 ~~~~~~~~~~----~~~~~~~~l~~l~~~~~~~~-~~pv~cvV~D~f~~wa~dvA~~lgIP~~~F~t~sa~~~~~~~~~~ 154 (481)
T PLN02554 80 DPTFQSYIDN----QKPKVRDAVAKLVDDSSTPS-SPRLAGFVVDMFCTSMIDVANEFGVPSYMFYTSNATFLGLQLHVQ 154 (481)
T ss_pred chHHHHHHHH----HHHHHHHHHHHHHhhhccCC-CCCeEEEEECCcchhHHHHHHHhCCCEEEEeCCcHHHHHHHHhhh
Confidence 1122222222 234444444444210 000 134699999999999999999999999999999999999999998
Q ss_pred HHHHC
Q 029508 161 ELLKR 165 (192)
Q Consensus 161 ~l~~~ 165 (192)
.+...
T Consensus 155 ~~~~~ 159 (481)
T PLN02554 155 MLYDE 159 (481)
T ss_pred hhccc
Confidence 86543
No 12
>PLN02992 coniferyl-alcohol glucosyltransferase
Probab=99.90 E-value=6e-23 Score=179.61 Aligned_cols=141 Identities=18% Similarity=0.204 Sum_probs=107.2
Q ss_pred CCceEEEEcCCCccChHHHHHHHHHHH-hCCCeEEEEcCCchhhhhhhccCCCccCCCCCceeEecCC----CCCCCCCC
Q 029508 7 RKAHAVCVPYPAQGHVSPMMQVAKLLH-SKGFHITFVNTEFNHRRLIRSKGPEYVKGLPDFRFETIPD----GLPPSDRD 81 (192)
Q Consensus 7 ~~~~Il~~p~p~~GH~~P~l~La~~La-~rGh~VT~it~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~----~~~~~~~~ 81 (192)
++.||+++|+|++||++||++|||+|+ ++|++||+++++.+.+++.... ...++|+++.+|+ ++++..
T Consensus 4 ~~pHVvl~P~paqGHi~P~l~LAk~La~~~g~~vT~v~t~~n~~~~~~~~-----~~~~~i~~~~lp~p~~~glp~~~-- 76 (481)
T PLN02992 4 TKPHAAMFSSPGMGHVIPVIELGKRLSANHGFHVTVFVLETDAASAQSKF-----LNSTGVDIVGLPSPDISGLVDPS-- 76 (481)
T ss_pred CCcEEEEeCCcccchHHHHHHHHHHHHhCCCcEEEEEeCCCchhhhhhcc-----ccCCCceEEECCCccccCCCCCC--
Confidence 578999999999999999999999998 7999999999998765442211 0113588888875 443111
Q ss_pred CCCCHHHHHHHHHHhCcHHHHHHHHHhhcCCCCCCCCeEEEEeCCCcchHHHHHHHhCCceEEecCCchHHHHHHHhHHH
Q 029508 82 ATQDVPALSDSIRKNGLAPFLELLGKLNSSADDQVPPVTCVVSDGIMGFGRKAAQMLGILDIQFWTASACGMMGYLQHVE 161 (192)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~d~vI~D~~~~~~~~vA~~lgIP~i~~~t~~a~~~~~~~~lp~ 161 (192)
.+....+......+.+.++++++++. .+++|||+|+|++|+.++|+++|||++.|++++++.+++++++|.
T Consensus 77 --~~~~~~~~~~~~~~~~~~~~~l~~~~-------~~p~cvV~D~f~~Wa~dVA~elgIP~v~F~t~sA~~~~~~~~~~~ 147 (481)
T PLN02992 77 --AHVVTKIGVIMREAVPTLRSKIAEMH-------QKPTALIVDLFGTDALCLGGEFNMLTYIFIASNARFLGVSIYYPT 147 (481)
T ss_pred --ccHHHHHHHHHHHhHHHHHHHHHhcC-------CCCeEEEECCcchhHHHHHHHcCCCEEEEecCcHHHHHHHHhhhh
Confidence 11211222222335678888888752 368999999999999999999999999999999999999988886
Q ss_pred HH
Q 029508 162 LL 163 (192)
Q Consensus 162 l~ 163 (192)
+.
T Consensus 148 ~~ 149 (481)
T PLN02992 148 LD 149 (481)
T ss_pred hc
Confidence 54
No 13
>PLN00164 glucosyltransferase; Provisional
Probab=99.90 E-value=5.4e-23 Score=180.45 Aligned_cols=145 Identities=19% Similarity=0.191 Sum_probs=108.3
Q ss_pred CceEEEEcCCCccChHHHHHHHHHHHhCC----CeEEEEcCCchhh----hhhhccCCCccCCCCCceeEecCCCCCCCC
Q 029508 8 KAHAVCVPYPAQGHVSPMMQVAKLLHSKG----FHITFVNTEFNHR----RLIRSKGPEYVKGLPDFRFETIPDGLPPSD 79 (192)
Q Consensus 8 ~~~Il~~p~p~~GH~~P~l~La~~La~rG----h~VT~it~~~~~~----~~~~~~~~~~~~~~~~i~~~~l~~~~~~~~ 79 (192)
+.||+++|+|++||++||++|||+|++|| +.|||++++.+.. ++...... .......|+++.+|++.++.+
T Consensus 3 ~~HVVlvPfpaqGHi~P~l~LAk~La~~g~~~~~~vT~~~t~~~~~~~~~~~~~~~~~-~~~~~~~i~~~~lp~~~~p~~ 81 (480)
T PLN00164 3 APTVVLLPVWGSGHLMSMLEAGKRLLASSGGGALSLTVLVMPPPTPESASEVAAHVRR-EAASGLDIRFHHLPAVEPPTD 81 (480)
T ss_pred CCEEEEeCCcchhHHHHHHHHHHHHHhCCCCCcEEEEEEEcCCCccchhHHHHHHHhh-cccCCCCEEEEECCCCCCCCc
Confidence 67999999999999999999999999997 7999999876432 22111100 001112589999987532111
Q ss_pred CCCCCCHHHHHHHHHHhCcHHHHHHHHHhhcCCCCCCCCeEEEEeCCCcchHHHHHHHhCCceEEecCCchHHHHHHHhH
Q 029508 80 RDATQDVPALSDSIRKNGLAPFLELLGKLNSSADDQVPPVTCVVSDGIMGFGRKAAQMLGILDIQFWTASACGMMGYLQH 159 (192)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~d~vI~D~~~~~~~~vA~~lgIP~i~~~t~~a~~~~~~~~l 159 (192)
..+...++..+...+.+.++++++++. .+++|||+|+|++|+.++|+++|||++.||+++++.+++|+++
T Consensus 82 ---~e~~~~~~~~~~~~~~~~l~~~L~~l~-------~pv~cIV~D~f~~Wa~dVA~elgIP~v~F~t~sA~~~~~~~~~ 151 (480)
T PLN00164 82 ---AAGVEEFISRYIQLHAPHVRAAIAGLS-------CPVAALVVDFFCTPLLDVARELAVPAYVYFTSTAAMLALMLRL 151 (480)
T ss_pred ---cccHHHHHHHHHHhhhHHHHHHHHhcC-------CCceEEEECCcchhHHHHHHHhCCCEEEEECccHHHHHHHhhh
Confidence 123334444344456788999888752 3689999999999999999999999999999999999999999
Q ss_pred HHHH
Q 029508 160 VELL 163 (192)
Q Consensus 160 p~l~ 163 (192)
|.+.
T Consensus 152 ~~~~ 155 (480)
T PLN00164 152 PALD 155 (480)
T ss_pred hhhc
Confidence 8754
No 14
>PLN03004 UDP-glycosyltransferase
Probab=99.90 E-value=8e-23 Score=177.74 Aligned_cols=149 Identities=17% Similarity=0.150 Sum_probs=104.5
Q ss_pred CceEEEEcCCCccChHHHHHHHHHHHhCC--CeEEE--EcCCchhhhhhhccCCCccCCCCCceeEecCCCCCC-CCCCC
Q 029508 8 KAHAVCVPYPAQGHVSPMMQVAKLLHSKG--FHITF--VNTEFNHRRLIRSKGPEYVKGLPDFRFETIPDGLPP-SDRDA 82 (192)
Q Consensus 8 ~~~Il~~p~p~~GH~~P~l~La~~La~rG--h~VT~--it~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~-~~~~~ 82 (192)
+.||+++|+|++||++||++|||+|++|| +.||+ +++..+...+..... ...+..++|+++.+|++.+. +....
T Consensus 3 ~~Hvvl~P~p~qGHi~P~l~LA~~La~~g~~~~vti~~~~~~~~~~~~~~~~~-~~~~~~~~i~~~~lp~~~~~~~~~~~ 81 (451)
T PLN03004 3 EEAIVLYPAPPIGHLVSMVELGKTILSKNPSLSIHIILVPPPYQPESTATYIS-SVSSSFPSITFHHLPAVTPYSSSSTS 81 (451)
T ss_pred CcEEEEeCCcccchHHHHHHHHHHHHhCCCceEEEEEEecCcchhhhhhhhhc-cccCCCCCeEEEEcCCCCCCCCcccc
Confidence 56999999999999999999999999998 55665 444443322211000 00112246999999976542 11111
Q ss_pred CCCHHHHHHHHHHhCcHHHHHHHHHhhcCCCCCCCCeEEEEeCCCcchHHHHHHHhCCceEEecCCchHHHHHHHhHHHH
Q 029508 83 TQDVPALSDSIRKNGLAPFLELLGKLNSSADDQVPPVTCVVSDGIMGFGRKAAQMLGILDIQFWTASACGMMGYLQHVEL 162 (192)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~d~vI~D~~~~~~~~vA~~lgIP~i~~~t~~a~~~~~~~~lp~l 162 (192)
..+...++......+.+.++++++++.. .++++|||+|+|++|+.++|+++|||++.|++++++.+++|+++|..
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~l~~l~~-----~~pv~cII~D~~~~Wa~~vA~~lgIP~v~F~t~sA~~~~~~~~~~~~ 156 (451)
T PLN03004 82 RHHHESLLLEILCFSNPSVHRTLFSLSR-----NFNVRAMIIDFFCTAVLDITADFTFPVYFFYTSGAACLAFSFYLPTI 156 (451)
T ss_pred ccCHHHHHHHHHHhhhHHHHHHHHhcCC-----CCCceEEEECCcchhHHHHHHHhCCCEEEEeCHhHHHHHHHHHHHhc
Confidence 1222222222233467888999887632 14579999999999999999999999999999999999999998864
No 15
>PLN03007 UDP-glucosyltransferase family protein
Probab=99.89 E-value=1.7e-22 Score=177.60 Aligned_cols=144 Identities=24% Similarity=0.329 Sum_probs=98.3
Q ss_pred CCceEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEcCCchhhhhhhccCCCccCCCC----CceeEecC---CCCCCCC
Q 029508 7 RKAHAVCVPYPAQGHVSPMMQVAKLLHSKGFHITFVNTEFNHRRLIRSKGPEYVKGLP----DFRFETIP---DGLPPSD 79 (192)
Q Consensus 7 ~~~~Il~~p~p~~GH~~P~l~La~~La~rGh~VT~it~~~~~~~~~~~~~~~~~~~~~----~i~~~~l~---~~~~~~~ 79 (192)
++.||+++|+|++||+|||++||++|++||++||+++++.+.+++.+ .+.......+ .+....+| +++|++.
T Consensus 4 ~~~hVvlvp~pa~GHi~P~L~LAk~L~~rG~~VT~vtt~~~~~~i~~-~~a~~~~~~~~~~~~~~~~~~p~~~~glP~g~ 82 (482)
T PLN03007 4 EKLHILFFPFMAHGHMIPTLDMAKLFSSRGAKSTILTTPLNAKIFEK-PIEAFKNLNPGLEIDIQIFNFPCVELGLPEGC 82 (482)
T ss_pred CCcEEEEECCCccccHHHHHHHHHHHHhCCCEEEEEECCCchhhhhh-hhhhhcccCCCCcceEEEeeCCCCcCCCCCCc
Confidence 47799999999999999999999999999999999999988765532 1211100011 23344455 3566531
Q ss_pred --CCC-----CCCHHHHHHHHH---HhCcHHHHHHHHHhhcCCCCCCCCeEEEEeCCCcchHHHHHHHhCCceEEecCCc
Q 029508 80 --RDA-----TQDVPALSDSIR---KNGLAPFLELLGKLNSSADDQVPPVTCVVSDGIMGFGRKAAQMLGILDIQFWTAS 149 (192)
Q Consensus 80 --~~~-----~~~~~~~~~~~~---~~~~~~~~~ll~~l~~~~~~~~~~~d~vI~D~~~~~~~~vA~~lgIP~i~~~t~~ 149 (192)
... ..+...+...+. ..+.+.+++++++ .++||||+|.+++|+.++|+++|||+++||+++
T Consensus 83 e~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~---------~~~~~IV~D~~~~w~~~vA~~lgIP~v~f~~~~ 153 (482)
T PLN03007 83 ENVDFITSNNNDDSGDLFLKFLFSTKYFKDQLEKLLET---------TRPDCLVADMFFPWATEAAEKFGVPRLVFHGTG 153 (482)
T ss_pred ccccccccccccchHHHHHHHHHHHHHHHHHHHHHHhc---------CCCCEEEECCcchhHHHHHHHhCCCeEEeeccc
Confidence 100 001112222221 1223444444432 368999999999999999999999999999999
Q ss_pred hHHHHHHHhHH
Q 029508 150 ACGMMGYLQHV 160 (192)
Q Consensus 150 a~~~~~~~~lp 160 (192)
++.+++++++.
T Consensus 154 a~~~~~~~~~~ 164 (482)
T PLN03007 154 YFSLCASYCIR 164 (482)
T ss_pred HHHHHHHHHHH
Confidence 99888877654
No 16
>PLN00414 glycosyltransferase family protein
Probab=99.89 E-value=1.6e-22 Score=175.89 Aligned_cols=135 Identities=23% Similarity=0.298 Sum_probs=99.1
Q ss_pred CCceEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEcCCchhhhhhhccCCCccCCCCCceeEecC----CCCCCCCCCC
Q 029508 7 RKAHAVCVPYPAQGHVSPMMQVAKLLHSKGFHITFVNTEFNHRRLIRSKGPEYVKGLPDFRFETIP----DGLPPSDRDA 82 (192)
Q Consensus 7 ~~~~Il~~p~p~~GH~~P~l~La~~La~rGh~VT~it~~~~~~~~~~~~~~~~~~~~~~i~~~~l~----~~~~~~~~~~ 82 (192)
++.||+++|+|++||+|||++|||+|++||++||+++++.+..++... +. ..+.++++.++ +++|++. +.
T Consensus 3 ~~~HVvlvPfpaqGHi~PmL~LAk~Las~G~~VT~vtt~~~~~~i~~~-~~----~~~~i~~~~i~lP~~dGLP~g~-e~ 76 (446)
T PLN00414 3 SKFHAFMYPWFGFGHMIPYLHLANKLAEKGHRVTFFLPKKAHKQLQPL-NL----FPDSIVFEPLTLPPVDGLPFGA-ET 76 (446)
T ss_pred CCCEEEEecCcccchHHHHHHHHHHHHhCCCEEEEEeCCchhhhhccc-cc----CCCceEEEEecCCCcCCCCCcc-cc
Confidence 478999999999999999999999999999999999999877655321 10 11247775543 4676541 22
Q ss_pred CCCHH----H-HHHHHHHhCcHHHHHHHHHhhcCCCCCCCCeEEEEeCCCcchHHHHHHHhCCceEEecCCchHHHHHHH
Q 029508 83 TQDVP----A-LSDSIRKNGLAPFLELLGKLNSSADDQVPPVTCVVSDGIMGFGRKAAQMLGILDIQFWTASACGMMGYL 157 (192)
Q Consensus 83 ~~~~~----~-~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~d~vI~D~~~~~~~~vA~~lgIP~i~~~t~~a~~~~~~~ 157 (192)
..++. . +.... ..+.+.++++++. .++||||+|+ ++|+.++|+++|||++.||+++++.+++++
T Consensus 77 ~~~l~~~~~~~~~~a~-~~l~~~l~~~L~~---------~~p~cVV~D~-~~wa~~vA~~lgIP~~~F~~~~a~~~~~~~ 145 (446)
T PLN00414 77 ASDLPNSTKKPIFDAM-DLLRDQIEAKVRA---------LKPDLIFFDF-VHWVPEMAKEFGIKSVNYQIISAACVAMVL 145 (446)
T ss_pred cccchhhHHHHHHHHH-HHHHHHHHHHHhc---------CCCeEEEECC-chhHHHHHHHhCCCEEEEecHHHHHHHHHh
Confidence 22221 1 12222 2234556666643 3579999995 899999999999999999999999999988
Q ss_pred h
Q 029508 158 Q 158 (192)
Q Consensus 158 ~ 158 (192)
+
T Consensus 146 ~ 146 (446)
T PLN00414 146 A 146 (446)
T ss_pred C
Confidence 7
No 17
>PLN02207 UDP-glycosyltransferase
Probab=99.89 E-value=3.5e-22 Score=174.40 Aligned_cols=150 Identities=20% Similarity=0.208 Sum_probs=104.0
Q ss_pred CceEEEEcCCCccChHHHHHHHHHHHhCC--CeEEEEcCCchhh-hhhhccCCCccCCCCCceeEecCCCCCCCCCCCCC
Q 029508 8 KAHAVCVPYPAQGHVSPMMQVAKLLHSKG--FHITFVNTEFNHR-RLIRSKGPEYVKGLPDFRFETIPDGLPPSDRDATQ 84 (192)
Q Consensus 8 ~~~Il~~p~p~~GH~~P~l~La~~La~rG--h~VT~it~~~~~~-~~~~~~~~~~~~~~~~i~~~~l~~~~~~~~~~~~~ 84 (192)
+.|++++|+|++||++||++|||+|++|| ..||+++++.+.. .+..... ......++|+|+.+|++..........
T Consensus 3 ~~hvv~~P~p~qGHi~P~l~lA~~La~~gg~~~vT~~~t~~~~~~~~~~~~~-~~~~~~~~i~~~~lp~~~~~~~~~~~~ 81 (468)
T PLN02207 3 NAELIFIPTPTVGHLVPFLEFARRLIEQDDRIRITILLMKLQGQSHLDTYVK-SIASSQPFVRFIDVPELEEKPTLGGTQ 81 (468)
T ss_pred CcEEEEeCCcchhhHHHHHHHHHHHHhCCCCeEEEEEEcCCCcchhhHHhhh-hccCCCCCeEEEEeCCCCCCCcccccc
Confidence 57999999999999999999999999998 9999999987652 2211000 000112369999999633211111122
Q ss_pred CHHHH-HHHHHHhCc----HHHHHHHHHhhcCCCCCCCCeEEEEeCCCcchHHHHHHHhCCceEEecCCchHHHHHHHhH
Q 029508 85 DVPAL-SDSIRKNGL----APFLELLGKLNSSADDQVPPVTCVVSDGIMGFGRKAAQMLGILDIQFWTASACGMMGYLQH 159 (192)
Q Consensus 85 ~~~~~-~~~~~~~~~----~~~~~ll~~l~~~~~~~~~~~d~vI~D~~~~~~~~vA~~lgIP~i~~~t~~a~~~~~~~~l 159 (192)
+...+ +..+. .+. +.+++++++... . .++++|||+|+|++|+.++|+++|||++.||+++++.+++++++
T Consensus 82 ~~~~~~~~~~~-~~~~~~~~~~~~~l~~~~~--~--~~pv~cvV~D~~~~w~~~vA~~~gip~~~f~~~~a~~~~~~~~~ 156 (468)
T PLN02207 82 SVEAYVYDVIE-KNIPLVRNIVMDILSSLAL--D--GVKVKGFVADFFCLPMIDVAKDVSLPFYVFLTTNSGFLAMMQYL 156 (468)
T ss_pred CHHHHHHHHHH-hcchhHHHHHHHHHHHhcc--C--CCCeEEEEECCcchHHHHHHHHhCCCEEEEECccHHHHHHHHHh
Confidence 34322 23322 343 345555554321 1 13569999999999999999999999999999999999999998
Q ss_pred HHHH
Q 029508 160 VELL 163 (192)
Q Consensus 160 p~l~ 163 (192)
+.+.
T Consensus 157 ~~~~ 160 (468)
T PLN02207 157 ADRH 160 (468)
T ss_pred hhcc
Confidence 8654
No 18
>PLN03015 UDP-glucosyl transferase
Probab=99.89 E-value=5.6e-22 Score=172.87 Aligned_cols=148 Identities=14% Similarity=0.121 Sum_probs=107.1
Q ss_pred CceEEEEcCCCccChHHHHHHHHHHHhC-CCeEEEEcCCchhhhhhhccCCCccCCCCCceeEecCCCCCCC-CCCCCCC
Q 029508 8 KAHAVCVPYPAQGHVSPMMQVAKLLHSK-GFHITFVNTEFNHRRLIRSKGPEYVKGLPDFRFETIPDGLPPS-DRDATQD 85 (192)
Q Consensus 8 ~~~Il~~p~p~~GH~~P~l~La~~La~r-Gh~VT~it~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~-~~~~~~~ 85 (192)
+.||+++|+|++||++||++|||+|++| |..||++++..+...+............++|+++.+|+...++ .......
T Consensus 3 ~pHvvl~P~p~qGHi~P~l~LAk~La~~~g~~vT~v~t~~~~~~~~~~~~~~~~~~~~~i~~~~lp~~~~~~l~~~~~~~ 82 (470)
T PLN03015 3 QPHALLVASPGLGHLIPILELGNRLSSVLNIHVTILAVTSGSSSPTETEAIHAAAARTTCQITEIPSVDVDNLVEPDATI 82 (470)
T ss_pred CcEEEEECCcccccHHHHHHHHHHHHhCCCCeEEEEECCCchhhhccccccccccCCCceEEEECCCCccccCCCCCccH
Confidence 4699999999999999999999999987 9999999988765433111000100011258999998532221 0101112
Q ss_pred HHHHHHHHHHhCcHHHHHHHHHhhcCCCCCCCCeEEEEeCCCcchHHHHHHHhCCc-eEEecCCchHHHHHHHhHHHHH
Q 029508 86 VPALSDSIRKNGLAPFLELLGKLNSSADDQVPPVTCVVSDGIMGFGRKAAQMLGIL-DIQFWTASACGMMGYLQHVELL 163 (192)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~d~vI~D~~~~~~~~vA~~lgIP-~i~~~t~~a~~~~~~~~lp~l~ 163 (192)
...++.... .+.+.++++++++. .+++|||+|+|++|+.++|+++||| ++.|++++++.+++|+++|.+.
T Consensus 83 ~~~~~~~~~-~~~~~~~~~l~~l~-------~~~~ciV~D~f~~w~~~vA~~lgIP~~~~f~~~~a~~~~~~~~l~~~~ 153 (470)
T PLN03015 83 FTKMVVKMR-AMKPAVRDAVKSMK-------RKPTVMIVDFFGTALMSIADDVGVTAKYVYIPSHAWFLAVMVYLPVLD 153 (470)
T ss_pred HHHHHHHHH-hchHHHHHHHHhcC-------CCCeEEEEcCCcHHHHHHHHHcCCCEEEEEcCHHHHHHHHHHhhhhhh
Confidence 223334333 46788999998763 3679999999999999999999999 6999999999999999998754
No 19
>PLN02167 UDP-glycosyltransferase family protein
Probab=99.88 E-value=6.1e-22 Score=173.74 Aligned_cols=153 Identities=20% Similarity=0.155 Sum_probs=100.9
Q ss_pred CceEEEEcCCCccChHHHHHHHHHHHhCCC---eEEEEcCCchhh-hhhhccCCCccCCCCCceeEecCCCC-CCCCCCC
Q 029508 8 KAHAVCVPYPAQGHVSPMMQVAKLLHSKGF---HITFVNTEFNHR-RLIRSKGPEYVKGLPDFRFETIPDGL-PPSDRDA 82 (192)
Q Consensus 8 ~~~Il~~p~p~~GH~~P~l~La~~La~rGh---~VT~it~~~~~~-~~~~~~~~~~~~~~~~i~~~~l~~~~-~~~~~~~ 82 (192)
+.||+++|+|++||++||++|||+|++||. .||++++..+.. ....... ......++|+|+.+|++. +.+....
T Consensus 3 ~~hVv~~PfpaqGHi~P~l~LAk~La~~G~~~t~vt~~~t~~~~~~~~~~~~~-~~~~~~~~i~~~~lp~~~~p~~~~~~ 81 (475)
T PLN02167 3 EAELIFVPFPSTGHILVTIEFAKRLINLDRRIHTITILYWSLPFAPQADAFLK-SLIASEPRIRLVTLPEVQDPPPMELF 81 (475)
T ss_pred ccEEEEeCChhhhhHHHHHHHHHHHHhCCCCeEEEEEEECCCCcchhhhHHHh-hcccCCCCeEEEECCCCCCCcccccc
Confidence 579999999999999999999999999994 567766543221 1100000 000122469999998643 2111000
Q ss_pred CCCH-HHHHHHHHHhCcHHHHHHHHHhhcC--CCCCCCCeEEEEeCCCcchHHHHHHHhCCceEEecCCchHHHHHHHhH
Q 029508 83 TQDV-PALSDSIRKNGLAPFLELLGKLNSS--ADDQVPPVTCVVSDGIMGFGRKAAQMLGILDIQFWTASACGMMGYLQH 159 (192)
Q Consensus 83 ~~~~-~~~~~~~~~~~~~~~~~ll~~l~~~--~~~~~~~~d~vI~D~~~~~~~~vA~~lgIP~i~~~t~~a~~~~~~~~l 159 (192)
.... ..+.... +.+.+.++++++++..+ +++ ..+++|||+|+|++|+.++|+++|||++.||+++++.+++|+++
T Consensus 82 ~~~~~~~~~~~~-~~~~~~l~~~l~~l~~~~~~~~-~~pv~cvV~D~f~~Wa~dVA~elgIP~v~F~t~~A~~~~~~~~~ 159 (475)
T PLN02167 82 VKASEAYILEFV-KKMVPLVRDALSTLVSSRDESD-SVRVAGLVLDFFCVPLIDVGNEFNLPSYIFLTCNAGFLGMMKYL 159 (475)
T ss_pred ccchHHHHHHHH-HHHHHHHHHHHHHHHhhccccC-CCCeEEEEECCccHHHHHHHHHhCCCEEEEECccHHHHHHHHHH
Confidence 1111 1222222 23456677777665310 011 12579999999999999999999999999999999999999998
Q ss_pred HHHH
Q 029508 160 VELL 163 (192)
Q Consensus 160 p~l~ 163 (192)
|...
T Consensus 160 ~~~~ 163 (475)
T PLN02167 160 PERH 163 (475)
T ss_pred HHhc
Confidence 8643
No 20
>PLN02764 glycosyltransferase family protein
Probab=99.88 E-value=1.4e-21 Score=169.72 Aligned_cols=137 Identities=21% Similarity=0.304 Sum_probs=102.0
Q ss_pred CCceEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEcCCchhhhhhhccCCCccCCCCCceeEecC--CCCCCCCCCCCC
Q 029508 7 RKAHAVCVPYPAQGHVSPMMQVAKLLHSKGFHITFVNTEFNHRRLIRSKGPEYVKGLPDFRFETIP--DGLPPSDRDATQ 84 (192)
Q Consensus 7 ~~~~Il~~p~p~~GH~~P~l~La~~La~rGh~VT~it~~~~~~~~~~~~~~~~~~~~~~i~~~~l~--~~~~~~~~~~~~ 84 (192)
.+.||+++|+|++||++||++|||+|++||+.||+++|+.+..++.. . ......-.+++..+| +++|++. +...
T Consensus 4 ~~~Hvvl~P~paqGHi~P~l~LAk~La~~g~~vT~~tt~~~~~~~~~-~--~~~~~~~~v~~~~~p~~~glp~g~-e~~~ 79 (453)
T PLN02764 4 LKFHVLMYPWFATGHMTPFLFLANKLAEKGHTVTFLLPKKALKQLEH-L--NLFPHNIVFRSVTVPHVDGLPVGT-ETVS 79 (453)
T ss_pred CCcEEEEECCcccccHHHHHHHHHHHHhCCCEEEEEeCcchhhhhcc-c--ccCCCCceEEEEECCCcCCCCCcc-cccc
Confidence 67899999999999999999999999999999999999987665422 1 000110126667776 5776541 1111
Q ss_pred CH-----HHHHHHHHHhCcHHHHHHHHHhhcCCCCCCCCeEEEEeCCCcchHHHHHHHhCCceEEecCCchHHHHHHHh
Q 029508 85 DV-----PALSDSIRKNGLAPFLELLGKLNSSADDQVPPVTCVVSDGIMGFGRKAAQMLGILDIQFWTASACGMMGYLQ 158 (192)
Q Consensus 85 ~~-----~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~d~vI~D~~~~~~~~vA~~lgIP~i~~~t~~a~~~~~~~~ 158 (192)
++ ..+...+. .+.+.++++++++ +++|||+|+ ++|+.++|+++|||++.||+++++.+++|++
T Consensus 80 ~~~~~~~~~~~~a~~-~~~~~~~~~l~~~---------~~~~iV~D~-~~w~~~vA~~~gIP~~~f~~~~a~~~~~~~~ 147 (453)
T PLN02764 80 EIPVTSADLLMSAMD-LTRDQVEVVVRAV---------EPDLIFFDF-AHWIPEVARDFGLKTVKYVVVSASTIASMLV 147 (453)
T ss_pred cCChhHHHHHHHHHH-HhHHHHHHHHHhC---------CCCEEEECC-chhHHHHHHHhCCCEEEEEcHHHHHHHHHhc
Confidence 11 12333332 3568888888762 569999995 8999999999999999999999999988864
No 21
>PLN02208 glycosyltransferase family protein
Probab=99.87 E-value=1.2e-21 Score=170.29 Aligned_cols=137 Identities=21% Similarity=0.277 Sum_probs=98.6
Q ss_pred CCceEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEcCCchhhhhhhccCCCccCCCCCceeEec--C--CCCCCCCCCC
Q 029508 7 RKAHAVCVPYPAQGHVSPMMQVAKLLHSKGFHITFVNTEFNHRRLIRSKGPEYVKGLPDFRFETI--P--DGLPPSDRDA 82 (192)
Q Consensus 7 ~~~~Il~~p~p~~GH~~P~l~La~~La~rGh~VT~it~~~~~~~~~~~~~~~~~~~~~~i~~~~l--~--~~~~~~~~~~ 82 (192)
.+.||+++|+|++||++||++|||+|++||++||++++..+..++. +.+. ....+++..+ + +++|++. +.
T Consensus 3 ~~~hvv~~P~paqGHi~P~l~LAk~La~~G~~VT~vtt~~~~~~i~-~~~a----~~~~i~~~~l~~p~~dgLp~g~-~~ 76 (442)
T PLN02208 3 PKFHAFMFPWFAFGHMIPFLHLANKLAEKGHRVTFLLPKKAQKQLE-HHNL----FPDSIVFHPLTIPPVNGLPAGA-ET 76 (442)
T ss_pred CCCEEEEecCccccHHHHHHHHHHHHHhCCCEEEEEeccchhhhhh-cccC----CCCceEEEEeCCCCccCCCCCc-cc
Confidence 4789999999999999999999999999999999999988776653 2111 1123566654 3 4566542 22
Q ss_pred CCCHH----HHHHHHHHhCcHHHHHHHHHhhcCCCCCCCCeEEEEeCCCcchHHHHHHHhCCceEEecCCchHHHHHHHh
Q 029508 83 TQDVP----ALSDSIRKNGLAPFLELLGKLNSSADDQVPPVTCVVSDGIMGFGRKAAQMLGILDIQFWTASACGMMGYLQ 158 (192)
Q Consensus 83 ~~~~~----~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~d~vI~D~~~~~~~~vA~~lgIP~i~~~t~~a~~~~~~~~ 158 (192)
..++. .++......+.+.+++++++ .++||||+| +++|+.++|+++|||++.||+++++.++ |++
T Consensus 77 ~~~l~~~l~~~~~~~~~~~~~~l~~~L~~---------~~~~cVV~D-~~~wa~~vA~e~giP~~~f~~~~a~~~~-~~~ 145 (442)
T PLN02208 77 TSDIPISMDNLLSEALDLTRDQVEAAVRA---------LRPDLIFFD-FAQWIPEMAKEHMIKSVSYIIVSATTIA-HTH 145 (442)
T ss_pred ccchhHHHHHHHHHHHHHHHHHHHHHHhh---------CCCeEEEEC-CcHhHHHHHHHhCCCEEEEEhhhHHHHH-HHc
Confidence 22222 12222122345667777754 367999999 5899999999999999999999998765 777
Q ss_pred HH
Q 029508 159 HV 160 (192)
Q Consensus 159 lp 160 (192)
++
T Consensus 146 ~~ 147 (442)
T PLN02208 146 VP 147 (442)
T ss_pred cC
Confidence 65
No 22
>cd03784 GT1_Gtf_like This family includes the Gtfs, a group of homologous glycosyltransferases involved in the final stages of the biosynthesis of antibiotics vancomycin and related chloroeremomycin. Gtfs transfer sugar moieties from an activated NDP-sugar donor to the oxidatively cross-linked heptapeptide core of vancomycin group antibiotics. The core structure is important for the bioactivity of the antibiotics.
Probab=99.64 E-value=8.8e-16 Score=131.44 Aligned_cols=126 Identities=15% Similarity=0.165 Sum_probs=88.3
Q ss_pred ceEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEcCCchhhhhhhccCCCccCCCCCceeEecCCCCCCC--CCCC----
Q 029508 9 AHAVCVPYPAQGHVSPMMQVAKLLHSKGFHITFVNTEFNHRRLIRSKGPEYVKGLPDFRFETIPDGLPPS--DRDA---- 82 (192)
Q Consensus 9 ~~Il~~p~p~~GH~~P~l~La~~La~rGh~VT~it~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~--~~~~---- 82 (192)
.||+++++|+.||++|++.|+++|++|||+|++++++.....+. + .+++|..+++..... +...
T Consensus 1 mrIl~~~~p~~GHv~P~l~la~~L~~rGh~V~~~t~~~~~~~v~-~---------~G~~~~~~~~~~~~~~~~~~~~~~~ 70 (401)
T cd03784 1 MRVLITTIGSRGDVQPLVALAWALRAAGHEVRVATPPEFADLVE-A---------AGLEFVPVGGDPDELLASPERNAGL 70 (401)
T ss_pred CeEEEEeCCCcchHHHHHHHHHHHHHCCCeEEEeeCHhHHHHHH-H---------cCCceeeCCCCHHHHHhhhhhcccc
Confidence 38999999999999999999999999999999999998776553 2 246777666432110 0000
Q ss_pred ----CCCHHHHHHHHHHhCcHHHHHHHHHhhcCCCCCCCCeEEEEeCCCcchHHHHHHHhCCceEEecCCch
Q 029508 83 ----TQDVPALSDSIRKNGLAPFLELLGKLNSSADDQVPPVTCVVSDGIMGFGRKAAQMLGILDIQFWTASA 150 (192)
Q Consensus 83 ----~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~d~vI~D~~~~~~~~vA~~lgIP~i~~~t~~a 150 (192)
..........+.......++++++.+.+ .++|+||+|.+..|+..+|+++|||++.+++++.
T Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~pDlvi~d~~~~~~~~~A~~~giP~v~~~~~~~ 136 (401)
T cd03784 71 LLLGPGLLLGALRLLRREAEAMLDDLVAAARD------WGPDLVVADPLAFAGAVAAEALGIPAVRLLLGPD 136 (401)
T ss_pred cccchHHHHHHHHHHHHHHHHHHHHHHHHhcc------cCCCEEEeCcHHHHHHHHHHHhCCCeEEeecccC
Confidence 0011111222222233455556655433 6899999999888999999999999999988764
No 23
>TIGR01426 MGT glycosyltransferase, MGT family. This model describes the MGT (macroside glycosyltransferase) subfamily of the UDP-glucuronosyltransferase family. Members include a number of glucosyl transferases for macrolide antibiotic inactivation, but also include transferases of glucose-related sugars for macrolide antibiotic production.
Probab=99.58 E-value=1.1e-14 Score=124.58 Aligned_cols=120 Identities=20% Similarity=0.257 Sum_probs=82.1
Q ss_pred EcCCCccChHHHHHHHHHHHhCCCeEEEEcCCchhhhhhhccCCCccCCCCCceeEecCCCCCCC-CCCC--CCCHHHHH
Q 029508 14 VPYPAQGHVSPMMQVAKLLHSKGFHITFVNTEFNHRRLIRSKGPEYVKGLPDFRFETIPDGLPPS-DRDA--TQDVPALS 90 (192)
Q Consensus 14 ~p~p~~GH~~P~l~La~~La~rGh~VT~it~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~-~~~~--~~~~~~~~ 90 (192)
+.+|+.||++|++.||++|++|||+||+++++.+.+.+. + .++++..++...... ..+. ..+...+.
T Consensus 1 ~~~p~~Ghv~P~l~lA~~L~~~Gh~V~~~~~~~~~~~v~-~---------~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 70 (392)
T TIGR01426 1 FNIPAHGHVNPTLGVVEELVARGHRVTYATTEEFAERVE-A---------AGAEFVLYGSALPPPDNPPENTEEEPIDII 70 (392)
T ss_pred CCCCccccccccHHHHHHHHhCCCeEEEEeCHHHHHHHH-H---------cCCEEEecCCcCccccccccccCcchHHHH
Confidence 357899999999999999999999999999999887763 2 246777776533221 0000 01222222
Q ss_pred HHHHHhCcHHHHHHHHHhhcCCCCCCCCeEEEEeCCCcchHHHHHHHhCCceEEecCCc
Q 029508 91 DSIRKNGLAPFLELLGKLNSSADDQVPPVTCVVSDGIMGFGRKAAQMLGILDIQFWTAS 149 (192)
Q Consensus 91 ~~~~~~~~~~~~~ll~~l~~~~~~~~~~~d~vI~D~~~~~~~~vA~~lgIP~i~~~t~~ 149 (192)
..+...+...+.++.+.+.+ .++||||.|.++.|+..+|+++|||+|.+++..
T Consensus 71 ~~~~~~~~~~~~~l~~~~~~------~~pDlVi~d~~~~~~~~~A~~~giP~v~~~~~~ 123 (392)
T TIGR01426 71 EKLLDEAEDVLPQLEEAYKG------DRPDLIVYDIASWTGRLLARKWDVPVISSFPTF 123 (392)
T ss_pred HHHHHHHHHHHHHHHHHhcC------CCCCEEEECCccHHHHHHHHHhCCCEEEEehhh
Confidence 22222222334444444332 579999999988899999999999999886543
No 24
>PF03033 Glyco_transf_28: Glycosyltransferase family 28 N-terminal domain; InterPro: IPR004276 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 28 GT28 from CAZY comprises enzymes with a number of known activities; 1,2-diacylglycerol 3-beta-galactosyltransferase (2.4.1.46 from EC); 1,2-diacylglycerol 3-beta-glucosyltransferase (2.4.1.157 from EC); beta-N-acetylglucosamine transferase (2.4.1 from EC).; GO: 0016758 transferase activity, transferring hexosyl groups, 0005975 carbohydrate metabolic process, 0030259 lipid glycosylation; PDB: 2IYF_B 2YJN_A 2P6P_A 1PNV_A 3H4T_A 3H4I_A 1PN3_B 3IA7_B 1NLM_B 1F0K_B ....
Probab=99.27 E-value=6.7e-13 Score=97.59 Aligned_cols=128 Identities=18% Similarity=0.281 Sum_probs=77.0
Q ss_pred EEEEcCCCccChHHHHHHHHHHHhCCCeEEEEcCCchhhhhhhccCCCccCCCCCceeEecCCC--CCCCCCCCCCCHHH
Q 029508 11 AVCVPYPAQGHVSPMMQVAKLLHSKGFHITFVNTEFNHRRLIRSKGPEYVKGLPDFRFETIPDG--LPPSDRDATQDVPA 88 (192)
Q Consensus 11 Il~~p~p~~GH~~P~l~La~~La~rGh~VT~it~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~--~~~~~~~~~~~~~~ 88 (192)
|++...+..||++|++.|+++|.+|||+|++.+.+...+.+. . .+++|+.++.+ ++.. .........
T Consensus 1 Ili~~~Gt~Ghv~P~lala~~L~~rGh~V~~~~~~~~~~~v~-~---------~Gl~~~~~~~~~~~~~~-~~~~~~~~~ 69 (139)
T PF03033_consen 1 ILIATGGTRGHVYPFLALARALRRRGHEVRLATPPDFRERVE-A---------AGLEFVPIPGDSRLPRS-LEPLANLRR 69 (139)
T ss_dssp EEEEEESSHHHHHHHHHHHHHHHHTT-EEEEEETGGGHHHHH-H---------TT-EEEESSSCGGGGHH-HHHHHHHHC
T ss_pred CEEEEcCChhHHHHHHHHHHHHhccCCeEEEeecccceeccc-c---------cCceEEEecCCcCcCcc-cchhhhhhh
Confidence 688899999999999999999999999999999999888773 3 25888888643 1100 000000000
Q ss_pred HHHHHHHhCcHHHHHHHHHhhcC---CCCCCCCeEEEEeCCCcchHHHHHHHhCCceEEecCCchH
Q 029508 89 LSDSIRKNGLAPFLELLGKLNSS---ADDQVPPVTCVVSDGIMGFGRKAAQMLGILDIQFWTASAC 151 (192)
Q Consensus 89 ~~~~~~~~~~~~~~~ll~~l~~~---~~~~~~~~d~vI~D~~~~~~~~vA~~lgIP~i~~~t~~a~ 151 (192)
..... .. -..+.+.++..... ..+.....|+++.+.....+..+|+++|||++.....+..
T Consensus 70 ~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~vaE~~~iP~~~~~~~p~~ 133 (139)
T PF03033_consen 70 LARLI-RG-LEEAMRILARFRPDLVVAAGGYVADDVIIAAPLAFAAALVAEQLGIPGVANRLFPWF 133 (139)
T ss_dssp HHHHH-HH-HHHHHHHHHHHHHCCCCHCTTTTECCEECHHHHHTHHHHHHHHHTS-EEEEESSGGG
T ss_pred HHHHh-hh-hhHHHHHhhccCcchhhhccCcccchHHHhhhhcCccceeEhhhCchHHHHhhCCcC
Confidence 11110 00 01122222221110 0000134778888887788899999999999988776643
No 25
>KOG1192 consensus UDP-glucuronosyl and UDP-glucosyl transferase [Carbohydrate transport and metabolism; Energy production and conversion]
Probab=99.21 E-value=1.1e-11 Score=108.98 Aligned_cols=148 Identities=32% Similarity=0.388 Sum_probs=88.1
Q ss_pred CceEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEcCCchhhhhhhccCCCcc-C--CCCCceeEecCCCCCCCCCCCC-
Q 029508 8 KAHAVCVPYPAQGHVSPMMQVAKLLHSKGFHITFVNTEFNHRRLIRSKGPEYV-K--GLPDFRFETIPDGLPPSDRDAT- 83 (192)
Q Consensus 8 ~~~Il~~p~p~~GH~~P~l~La~~La~rGh~VT~it~~~~~~~~~~~~~~~~~-~--~~~~i~~~~l~~~~~~~~~~~~- 83 (192)
+.|++++++|++||++|++++|++|+++||+||++++.......... ..... . +.....+...+++++.+ ....
T Consensus 5 ~~~~il~~~p~~sH~~~~~~la~~L~~~gh~vt~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 82 (496)
T KOG1192|consen 5 KAHNILVPFPGQSHLNPMLQLAKRLAERGHNVTVVTPSFNALKLSKS-SKSKSIKKINPPPFEFLTIPDGLPEG-WEDDD 82 (496)
T ss_pred cceeEEEECCcccHHHHHHHHHHHHHHcCCceEEEEeechhcccCCc-ccceeeeeeecChHHhhhhhhhhccc-hHHHH
Confidence 57899999999999999999999999999999999998766543211 00000 0 00011111111222221 0000
Q ss_pred CCHHHHHHHHHHhCcHHHHHHHHHhhcCCCCCCCCeEEEEeCCCcchHHHHHHHhC-CceEEecCCchHHHHHHHhHH
Q 029508 84 QDVPALSDSIRKNGLAPFLELLGKLNSSADDQVPPVTCVVSDGIMGFGRKAAQMLG-ILDIQFWTASACGMMGYLQHV 160 (192)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~d~vI~D~~~~~~~~vA~~lg-IP~i~~~t~~a~~~~~~~~lp 160 (192)
.............+...+++....+... . ..++||+|+|.+..|...+|.+.+ ++...+++.++...++....+
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~--~~~~d~~i~d~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~g~~~~ 157 (496)
T KOG1192|consen 83 LDISESLLELNKTCEDLLRDPLEKLLLL-K--SEKFDLIISDPFLGLFLLLAIPSFVIPLLSFPTSSAVLLALGLPSP 157 (496)
T ss_pred HHHHHHHHHHHHHHHHHHhchHHHHHHh-h--cCCccEEEechhhHHHHHhcccceEEEeecccCchHHHHhcCCcCc
Confidence 0111111122222333444433322210 1 134999999999889998887775 999999999988887766544
No 26
>PHA03392 egt ecdysteroid UDP-glucosyltransferase; Provisional
Probab=98.99 E-value=3.8e-09 Score=93.79 Aligned_cols=129 Identities=15% Similarity=0.143 Sum_probs=78.7
Q ss_pred CceEEEE-cCCCccChHHHHHHHHHHHhCCCeEEEEcCCchhhhhhhccCCCccCCCCCceeEecCC---CCC----CCC
Q 029508 8 KAHAVCV-PYPAQGHVSPMMQVAKLLHSKGFHITFVNTEFNHRRLIRSKGPEYVKGLPDFRFETIPD---GLP----PSD 79 (192)
Q Consensus 8 ~~~Il~~-p~p~~GH~~P~l~La~~La~rGh~VT~it~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~---~~~----~~~ 79 (192)
..+|+++ |.++.||++-+..++++|++|||+||++++..... . .. ....+++...++. ... ..+
T Consensus 20 ~~kIl~~~P~~~~SH~~~~~~l~~~La~rGH~VTvi~p~~~~~-~-~~------~~~~~~~~i~~~~~~~~~~~~~~~~~ 91 (507)
T PHA03392 20 AARILAVFPTPAYSHHSVFKVYVEALAERGHNVTVIKPTLRVY-Y-AS------HLCGNITEIDASLSVEYFKKLVKSSA 91 (507)
T ss_pred cccEEEEcCCCCCcHHHHHHHHHHHHHHcCCeEEEEecccccc-c-cc------CCCCCEEEEEcCCChHHHHHHHhhhh
Confidence 3568755 88999999999999999999999999997764211 1 00 0113455444431 100 000
Q ss_pred -CCC---CCCHHH----H----HHHHH-HhCcHHHHHHHHHhhcCCCCCCCCeEEEEeCCCcchHHHHHHHh-CCceEEe
Q 029508 80 -RDA---TQDVPA----L----SDSIR-KNGLAPFLELLGKLNSSADDQVPPVTCVVSDGIMGFGRKAAQML-GILDIQF 145 (192)
Q Consensus 80 -~~~---~~~~~~----~----~~~~~-~~~~~~~~~ll~~l~~~~~~~~~~~d~vI~D~~~~~~~~vA~~l-gIP~i~~ 145 (192)
... ..+... . ...+. ....+.+.+++++ ++ .+||++|+|.+..++..+|+++ |+|.|.+
T Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~L~~-~~------~kFDlvi~e~~~~c~~~la~~~~~~p~i~~ 164 (507)
T PHA03392 92 VFRKRGVVADSSTVTADNYMGLVRMISDQFDLPNVKNLIAN-KN------NKFDLLVTEAFLDYPLVFSHLFGDAPVIQI 164 (507)
T ss_pred HHHhhhhhhhHHHHHHHHHHHHHHHHHHHHCCHHHHHHHhc-CC------CceeEEEecccchhHHHHHHHhCCCCEEEE
Confidence 000 000000 0 11111 1224556666642 12 5799999999888888999999 9999888
Q ss_pred cCCchH
Q 029508 146 WTASAC 151 (192)
Q Consensus 146 ~t~~a~ 151 (192)
++++..
T Consensus 165 ss~~~~ 170 (507)
T PHA03392 165 SSGYGL 170 (507)
T ss_pred cCCCCc
Confidence 886553
No 27
>PF00201 UDPGT: UDP-glucoronosyl and UDP-glucosyl transferase; InterPro: IPR002213 UDP glycosyltransferases (UGT) are a superfamily of enzymes that catalyzes the addition of the glycosyl group from a UTP-sugar to a small hydrophobic molecule. This family currently consist of: Mammalian UDP-glucuronosyl transferases (2.4.1.17 from EC) (UDPGT) []. A large family of membrane-bound microsomal enzymes which catalyze the transfer of glucuronic acid to a wide variety of exogenous and endogenous lipophilic substrates. These enzymes are of major importance in the detoxification and subsequent elimination of xenobiotics such as drugs and carcinogens. A large number of putative UDPGT from Caenorhabditis elegans. Mammalian 2-hydroxyacylsphingosine 1-beta-galactosyltransferase [] (2.4.1.45 from EC) (also known as UDP-galactose-ceramide galactosyltransferase). This enzyme catalyzes the transfer of galactose to ceramide, a key enzymatic step in the biosynthesis of galactocerebrosides, which are abundant sphingolipids of the myelin membrane of the central nervous system and peripheral nervous system. Plants flavonol O(3)-glucosyltransferase (2.4.1.91 from EC). An enzyme [] that catalyzes the transfer of glucose from UDP-glucose to a flavanol. This reaction is essential and one of the last steps in anthocyanin pigment biosynthesis. Baculoviruses ecdysteroid UDP-glucosyltransferase (2.4.1 from EC) [] (egt). This enzyme catalyzes the transfer of glucose from UDP-glucose to ectysteroids which are insect molting hormones. The expression of egt in the insect host interferes with the normal insect development by blocking the molting process. Prokaryotic zeaxanthin glucosyltransferase (2.4.1 from EC) (gene crtX), an enzyme involved in carotenoid biosynthesis and that catalyses the glycosylation reaction which converts zeaxanthin to zeaxanthin-beta-diglucoside. Streptomyces macrolide glycosyltransferases (2.4.1 from EC) []. These enzymes specifically inactivates macrolide anitibiotics via 2'-O-glycosylation using UDP-glucose. These enzymes share a conserved domain of about 50 amino acid residues located in their C-terminal section.; GO: 0016758 transferase activity, transferring hexosyl groups, 0008152 metabolic process; PDB: 3HBJ_A 3HBF_A 2PQ6_A 3IA7_B 3RSC_A 3IAA_B 2IYA_A 2IYF_B 2O6L_A 2VCH_A ....
Probab=98.86 E-value=6e-11 Score=104.63 Aligned_cols=123 Identities=25% Similarity=0.305 Sum_probs=56.4
Q ss_pred eEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEcCCchhhhhhhccCCCccCCCCCceeEecCCCCCCCCCCC-CCCHH-
Q 029508 10 HAVCVPYPAQGHVSPMMQVAKLLHSKGFHITFVNTEFNHRRLIRSKGPEYVKGLPDFRFETIPDGLPPSDRDA-TQDVP- 87 (192)
Q Consensus 10 ~Il~~p~p~~GH~~P~l~La~~La~rGh~VT~it~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~~~~~-~~~~~- 87 (192)
||+++|. +.||+++|..++++|++|||+||++++..... +... ...++++..++.+.+..+... ..+..
T Consensus 2 kvLv~p~-~~SH~~~~~~l~~~L~~rGH~VTvl~~~~~~~-~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 72 (500)
T PF00201_consen 2 KVLVFPM-AYSHFIFMRPLAEELAERGHNVTVLTPSPSSS-LNPS-------KPSNIRFETYPDPYPEEEFEEIFPEFIS 72 (500)
T ss_dssp -----------SHHHHHHHHHHHHHH-TTSEEEHHHHHHT--------------S-CCEEEE-----TT------TTHHH
T ss_pred EEEEeCC-CcCHHHHHHHHHHHHHhcCCceEEEEeecccc-cccc-------cccceeeEEEcCCcchHHHhhhhHHHHH
Confidence 7888985 78999999999999999999999998764321 2100 113567777765443321111 11111
Q ss_pred HH-------------HHHH-------HHhCcHHH--HHHHHHhhcCCCCCCCCeEEEEeCCCcchHHHHHHHhCCceEEe
Q 029508 88 AL-------------SDSI-------RKNGLAPF--LELLGKLNSSADDQVPPVTCVVSDGIMGFGRKAAQMLGILDIQF 145 (192)
Q Consensus 88 ~~-------------~~~~-------~~~~~~~~--~~ll~~l~~~~~~~~~~~d~vI~D~~~~~~~~vA~~lgIP~i~~ 145 (192)
.. +... ...|+..+ +++++.+++ .++|++|.|.+.+|+..+|+.+|+|.+.+
T Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~~l~d~~l~~~l~~------~~fDlvI~d~f~~c~~~la~~l~iP~i~~ 146 (500)
T PF00201_consen 73 KFFSESSFANSFWEMFKMLNAFFDFFSKSCEDLLSDPELMEQLKS------EKFDLVISDAFDPCGLALAHYLGIPVIII 146 (500)
T ss_dssp HHHHHHCCHHHHHHHHHHHHCHHHS----E--EEEETTSTTHHHH------HHHCT-EEEEEESSHHHHHHHHHHTHHHH
T ss_pred HHhhhcccchhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHh------hccccceEeeccchhHHHHHHhcCCeEEE
Confidence 00 1100 01110000 111122221 36888888888888888888888888765
Q ss_pred cC
Q 029508 146 WT 147 (192)
Q Consensus 146 ~t 147 (192)
.+
T Consensus 147 ~s 148 (500)
T PF00201_consen 147 SS 148 (500)
T ss_dssp HH
T ss_pred ec
Confidence 44
No 28
>COG1819 Glycosyl transferases, related to UDP-glucuronosyltransferase [Carbohydrate transport and metabolism / Signal transduction mechanisms]
Probab=98.53 E-value=1.7e-07 Score=81.21 Aligned_cols=45 Identities=24% Similarity=0.366 Sum_probs=41.8
Q ss_pred CceEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEcCCchhhhhh
Q 029508 8 KAHAVCVPYPAQGHVSPMMQVAKLLHSKGFHITFVNTEFNHRRLI 52 (192)
Q Consensus 8 ~~~Il~~p~p~~GH~~P~l~La~~La~rGh~VT~it~~~~~~~~~ 52 (192)
+.||+++..|..||++|++.|+++|.++||+|+++++....+.+.
T Consensus 1 ~mkil~~~~~~~Ghv~p~~aL~~eL~~~gheV~~~~~~~~~~~ve 45 (406)
T COG1819 1 RMKILFVVCGAYGHVNPCLALGKELRRRGHEVVFASTGKFKEFVE 45 (406)
T ss_pred CceEEEEeccccccccchHHHHHHHHhcCCeEEEEeCHHHHHHHH
Confidence 358999999999999999999999999999999999999998874
No 29
>PF13528 Glyco_trans_1_3: Glycosyl transferase family 1
Probab=98.52 E-value=1.5e-06 Score=72.12 Aligned_cols=121 Identities=19% Similarity=0.169 Sum_probs=71.5
Q ss_pred eEEEEcC-CCccChHHHHHHHHHHHhCCCeEEEEcCCchhhhhhhccCCCccCCCCCceeEecCC-CCCCCCCCCCCCHH
Q 029508 10 HAVCVPY-PAQGHVSPMMQVAKLLHSKGFHITFVNTEFNHRRLIRSKGPEYVKGLPDFRFETIPD-GLPPSDRDATQDVP 87 (192)
Q Consensus 10 ~Il~~p~-p~~GH~~P~l~La~~La~rGh~VT~it~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~-~~~~~~~~~~~~~~ 87 (192)
||++... -|.||+.-.+.|+++| |||+|++++.....+.+ +. .+....++. +.... ........
T Consensus 2 kIl~~v~~~G~GH~~R~~~la~~L--rg~~v~~~~~~~~~~~~-~~----------~~~~~~~~~~~~~~~-~~~~~~~~ 67 (318)
T PF13528_consen 2 KILFYVQGHGLGHASRCLALARAL--RGHEVTFITSGPAPEFL-KP----------RFPVREIPGLGPIQE-NGRLDRWK 67 (318)
T ss_pred EEEEEeCCCCcCHHHHHHHHHHHH--ccCceEEEEcCCcHHHh-cc----------ccCEEEccCceEecc-CCccchHH
Confidence 6665554 4889999999999999 69999999988654333 11 133443432 11111 01111111
Q ss_pred HHHHHH--HHhCcHHHHHHHHHhhcCCCCCCCCeEEEEeCCCcchHHHHHHHhCCceEEecCCchH
Q 029508 88 ALSDSI--RKNGLAPFLELLGKLNSSADDQVPPVTCVVSDGIMGFGRKAAQMLGILDIQFWTASAC 151 (192)
Q Consensus 88 ~~~~~~--~~~~~~~~~~ll~~l~~~~~~~~~~~d~vI~D~~~~~~~~vA~~lgIP~i~~~t~~a~ 151 (192)
...... .......++++++.+.+ .+||+||+|. .+.+...|+..|||++.+......
T Consensus 68 ~~~~~~~~~~~~~~~~~~~~~~l~~------~~pDlVIsD~-~~~~~~aa~~~giP~i~i~~~~~~ 126 (318)
T PF13528_consen 68 TVRNNIRWLARLARRIRREIRWLRE------FRPDLVISDF-YPLAALAARRAGIPVIVISNQYWF 126 (318)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHh------cCCCEEEEcC-hHHHHHHHHhcCCCEEEEEehHHc
Confidence 111111 00112334445554443 5799999995 455678889999999987776644
No 30
>TIGR00661 MJ1255 conserved hypothetical protein. This model represents nearly the full length of MJ1255 from Methanococcus jannaschii and of an unpublished protein from Vibrio cholerae, as well as the C-terminal half of a protein from Methanobacterium thermoautotrophicum. A small region (~50 amino acids) within the domain appears related to a family of sugar transferases.
Probab=98.42 E-value=3.3e-06 Score=70.66 Aligned_cols=120 Identities=14% Similarity=0.189 Sum_probs=66.7
Q ss_pred EEE-EcCCCccChHHHHHHHHHHHhCCCeEEEEcCCchhhhhhhccCCCccCCCCCce-eEecCCCCCCCCCCCCCCHHH
Q 029508 11 AVC-VPYPAQGHVSPMMQVAKLLHSKGFHITFVNTEFNHRRLIRSKGPEYVKGLPDFR-FETIPDGLPPSDRDATQDVPA 88 (192)
Q Consensus 11 Il~-~p~p~~GH~~P~l~La~~La~rGh~VT~it~~~~~~~~~~~~~~~~~~~~~~i~-~~~l~~~~~~~~~~~~~~~~~ 88 (192)
|++ +...|.||+.|.+.++++|.+ ||+|+++++......+ +.. ++. +...|. +.-......-+...
T Consensus 2 il~~~~g~G~GH~~r~~ala~~L~~-g~ev~~~~~~~~~~~~-~~~---------~~~~~~~~p~-~~~~~~~~~~~~~~ 69 (321)
T TIGR00661 2 ILYSVCGEGFGHTTRSVAIGEALKN-DYEVSYIASGRSKNYI-SKY---------GFKVFETFPG-IKLKGEDGKVNIVK 69 (321)
T ss_pred EEEEEeccCccHHHHHHHHHHHHhC-CCeEEEEEcCCHHHhh-hhh---------cCcceeccCC-ceEeecCCcCcHHH
Confidence 454 556777999999999999999 9999999876633322 221 122 222221 10000000011111
Q ss_pred HHHHHHHhCcHHHHHHHHHhhcCCCCCCCCeEEEEeCCCcchHHHHHHHhCCceEEecCCc
Q 029508 89 LSDSIRKNGLAPFLELLGKLNSSADDQVPPVTCVVSDGIMGFGRKAAQMLGILDIQFWTAS 149 (192)
Q Consensus 89 ~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~d~vI~D~~~~~~~~vA~~lgIP~i~~~t~~ 149 (192)
............+.+..+.+++ .+||+||+| +-..+..+|+.+|||++.+.-+.
T Consensus 70 ~l~~~~~~~~~~~~~~~~~l~~------~~pDlVi~d-~~~~~~~aA~~~~iP~i~i~~q~ 123 (321)
T TIGR00661 70 TLRNKEYSPKKAIRREINIIRE------YNPDLIISD-FEYSTVVAAKLLKIPVICISNQN 123 (321)
T ss_pred HHHhhccccHHHHHHHHHHHHh------cCCCEEEEC-CchHHHHHHHhcCCCEEEEecch
Confidence 1110001001223333343333 579999999 45566889999999999765543
No 31
>PRK12446 undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase; Reviewed
Probab=97.97 E-value=0.00019 Score=61.07 Aligned_cols=120 Identities=11% Similarity=0.070 Sum_probs=71.4
Q ss_pred ceEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEcCCchhhhhhhccCCCccCCCCCceeEecCC-CCCCCCCCCCCCHH
Q 029508 9 AHAVCVPYPAQGHVSPMMQVAKLLHSKGFHITFVNTEFNHRRLIRSKGPEYVKGLPDFRFETIPD-GLPPSDRDATQDVP 87 (192)
Q Consensus 9 ~~Il~~p~p~~GH~~P~l~La~~La~rGh~VT~it~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~-~~~~~~~~~~~~~~ 87 (192)
.+|++.....-||+.|.+.++++|.++||+|.++++..-.+. .. ... .++.+..++. ++. ....+.
T Consensus 2 ~~i~~~~GGTGGHi~Pala~a~~l~~~g~~v~~vg~~~~~e~---~l----~~~-~g~~~~~~~~~~l~-----~~~~~~ 68 (352)
T PRK12446 2 KKIVFTGGGSAGHVTPNLAIIPYLKEDNWDISYIGSHQGIEK---TI----IEK-ENIPYYSISSGKLR-----RYFDLK 68 (352)
T ss_pred CeEEEEcCCcHHHHHHHHHHHHHHHhCCCEEEEEECCCcccc---cc----Ccc-cCCcEEEEeccCcC-----CCchHH
Confidence 467788777779999999999999999999999987653321 10 011 2466666652 221 111121
Q ss_pred HHHHHHHHhCc--HHHHHHHHHhhcCCCCCCCCeEEEEeCCCcch--HHHHHHHhCCceEEecCCchH
Q 029508 88 ALSDSIRKNGL--APFLELLGKLNSSADDQVPPVTCVVSDGIMGF--GRKAAQMLGILDIQFWTASAC 151 (192)
Q Consensus 88 ~~~~~~~~~~~--~~~~~ll~~l~~~~~~~~~~~d~vI~D~~~~~--~~~vA~~lgIP~i~~~t~~a~ 151 (192)
. +....+... -....++++ .+||+||....+.. +...|..+++|++........
T Consensus 69 ~-~~~~~~~~~~~~~~~~i~~~---------~kPdvvi~~Ggy~s~p~~~aa~~~~~p~~i~e~n~~~ 126 (352)
T PRK12446 69 N-IKDPFLVMKGVMDAYVRIRK---------LKPDVIFSKGGFVSVPVVIGGWLNRVPVLLHESDMTP 126 (352)
T ss_pred H-HHHHHHHHHHHHHHHHHHHh---------cCCCEEEecCchhhHHHHHHHHHcCCCEEEECCCCCc
Confidence 1 111111111 112233433 58999999664432 357778889999887665433
No 32
>COG0707 MurG UDP-N-acetylglucosamine:LPS N-acetylglucosamine transferase [Cell envelope biogenesis, outer membrane]
Probab=97.47 E-value=0.0026 Score=54.36 Aligned_cols=121 Identities=23% Similarity=0.264 Sum_probs=71.5
Q ss_pred eEEEEcCCCccChHHHHHHHHHHHhCCC-eEEEEcCCchhhhhhhccCCCccCCCCCceeEecCCCCCCCCCCCCCCHHH
Q 029508 10 HAVCVPYPAQGHVSPMMQVAKLLHSKGF-HITFVNTEFNHRRLIRSKGPEYVKGLPDFRFETIPDGLPPSDRDATQDVPA 88 (192)
Q Consensus 10 ~Il~~p~p~~GH~~P~l~La~~La~rGh-~VT~it~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~ 88 (192)
+|++....+-||+.|.+.|++.|.++|+ +|.++.+....+.... .. ..+.++.++.+-..+ ......+..
T Consensus 2 ~ivl~~gGTGGHv~pAlAl~~~l~~~g~~~v~~~~~~~~~e~~l~-------~~-~~~~~~~I~~~~~~~-~~~~~~~~~ 72 (357)
T COG0707 2 KIVLTAGGTGGHVFPALALAEELAKRGWEQVIVLGTGDGLEAFLV-------KQ-YGIEFELIPSGGLRR-KGSLKLLKA 72 (357)
T ss_pred eEEEEeCCCccchhHHHHHHHHHHhhCccEEEEecccccceeeec-------cc-cCceEEEEecccccc-cCcHHHHHH
Confidence 4667777777999999999999999999 5777755543332211 11 257777776422111 111112221
Q ss_pred HHHHHHHhCcHHHHHHHHHhhcCCCCCCCCeEEEEeCCCc--chHHHHHHHhCCceEEecCCch
Q 029508 89 LSDSIRKNGLAPFLELLGKLNSSADDQVPPVTCVVSDGIM--GFGRKAAQMLGILDIQFWTASA 150 (192)
Q Consensus 89 ~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~d~vI~D~~~--~~~~~vA~~lgIP~i~~~t~~a 150 (192)
.+.... .....++++++ .+||+||.=..+ ..+...|..+|||.+.--+-..
T Consensus 73 ~~~~~~--~~~~a~~il~~---------~kPd~vig~Ggyvs~P~~~Aa~~~~iPv~ihEqn~~ 125 (357)
T COG0707 73 PFKLLK--GVLQARKILKK---------LKPDVVIGTGGYVSGPVGIAAKLLGIPVIIHEQNAV 125 (357)
T ss_pred HHHHHH--HHHHHHHHHHH---------cCCCEEEecCCccccHHHHHHHhCCCCEEEEecCCC
Confidence 122211 11234566665 479999995444 3345677888999998665443
No 33
>cd03785 GT1_MurG MurG is an N-acetylglucosaminyltransferase, the last enzyme involved in the intracellular phase of peptidoglycan biosynthesis. It transfers N-acetyl-D-glucosamine (GlcNAc) from UDP-GlcNAc to the C4 hydroxyl of a lipid-linked N-acetylmuramoyl pentapeptide (NAM). The resulting disaccharide is then transported across the cell membrane, where it is polymerized into NAG-NAM cell-wall repeat structure. MurG belongs to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains, each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=97.31 E-value=0.0039 Score=52.06 Aligned_cols=116 Identities=21% Similarity=0.192 Sum_probs=65.3
Q ss_pred eEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEcCCchhhhhhhccCCCccCCCCCceeEecCCCCCCCCCCCCCCHHHH
Q 029508 10 HAVCVPYPAQGHVSPMMQVAKLLHSKGFHITFVNTEFNHRRLIRSKGPEYVKGLPDFRFETIPDGLPPSDRDATQDVPAL 89 (192)
Q Consensus 10 ~Il~~p~p~~GH~~P~l~La~~La~rGh~VT~it~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~ 89 (192)
+|++...-..||......|++.|.++||+|++++...... . .. ....++++..++..-..+. .....+...
T Consensus 1 ~~~~~~~~~gG~~~~~~~la~~l~~~G~ev~v~~~~~~~~-~-~~------~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 71 (350)
T cd03785 1 RILIAGGGTGGHIFPALALAEELRERGAEVLFLGTKRGLE-A-RL------VPKAGIPLHTIPVGGLRRK-GSLKKLKAP 71 (350)
T ss_pred CEEEEecCchhhhhHHHHHHHHHHhCCCEEEEEECCCcch-h-hc------ccccCCceEEEEecCcCCC-ChHHHHHHH
Confidence 4666666666999999999999999999999998754221 1 00 0112466665542111110 000111111
Q ss_pred HHHHHHhCcHHHHHHHHHhhcCCCCCCCCeEEEEeCCCc-c-hHHHHHHHhCCceEEe
Q 029508 90 SDSIRKNGLAPFLELLGKLNSSADDQVPPVTCVVSDGIM-G-FGRKAAQMLGILDIQF 145 (192)
Q Consensus 90 ~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~d~vI~D~~~-~-~~~~vA~~lgIP~i~~ 145 (192)
+..... ...+.+++++ .+||+|++..-. . ++...|...|+|.+..
T Consensus 72 ~~~~~~--~~~~~~~i~~---------~~pDvI~~~~~~~~~~~~~~a~~~~~p~v~~ 118 (350)
T cd03785 72 FKLLKG--VLQARKILKK---------FKPDVVVGFGGYVSGPVGLAAKLLGIPLVIH 118 (350)
T ss_pred HHHHHH--HHHHHHHHHh---------cCCCEEEECCCCcchHHHHHHHHhCCCEEEE
Confidence 111111 1223444443 579999986532 3 3456778889999864
No 34
>TIGR01133 murG undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase. RL J Bacteriol 1993 Mar;175(6):1841-3
Probab=97.11 E-value=0.016 Score=48.36 Aligned_cols=116 Identities=19% Similarity=0.168 Sum_probs=64.7
Q ss_pred eEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEcCCchhhhhhhccCCCccCCCCCceeEecCCCCCCCCCCCCCCHHHH
Q 029508 10 HAVCVPYPAQGHVSPMMQVAKLLHSKGFHITFVNTEFNHRRLIRSKGPEYVKGLPDFRFETIPDGLPPSDRDATQDVPAL 89 (192)
Q Consensus 10 ~Il~~p~p~~GH~~P~l~La~~La~rGh~VT~it~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~ 89 (192)
||+++..-..||+.....|+++|.++||+|++++.+.... . .. ....+++++.++-.-..+ ......+...
T Consensus 2 ~i~~~~g~~~g~~~~~~~La~~L~~~g~eV~vv~~~~~~~-~--~~-----~~~~g~~~~~i~~~~~~~-~~~~~~l~~~ 72 (348)
T TIGR01133 2 KVVLAAGGTGGHIFPALAVAEELIKRGVEVLWLGTKRGLE-K--RL-----VPKAGIEFYFIPVGGLRR-KGSFRLIKTP 72 (348)
T ss_pred eEEEEeCccHHHHhHHHHHHHHHHhCCCEEEEEeCCCcch-h--cc-----cccCCCceEEEeccCcCC-CChHHHHHHH
Confidence 6888887777999977899999999999999998643211 0 00 011246666554211100 0000001111
Q ss_pred HHHHHHhCcHHHHHHHHHhhcCCCCCCCCeEEEEeCCCcc--hHHHHHHHhCCceEEe
Q 029508 90 SDSIRKNGLAPFLELLGKLNSSADDQVPPVTCVVSDGIMG--FGRKAAQMLGILDIQF 145 (192)
Q Consensus 90 ~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~d~vI~D~~~~--~~~~vA~~lgIP~i~~ 145 (192)
+..... ...+.+++++ .+||+|++..... ++..++...++|.+.+
T Consensus 73 ~~~~~~--~~~l~~~i~~---------~~pDvVi~~~~~~~~~~~~~~~~~~~p~v~~ 119 (348)
T TIGR01133 73 LKLLKA--VFQARRILKK---------FKPDAVIGFGGYVSGPAGLAAKLLGIPLFHH 119 (348)
T ss_pred HHHHHH--HHHHHHHHHh---------cCCCEEEEcCCcccHHHHHHHHHcCCCEEEE
Confidence 111110 1223444443 5799999975432 2345677889999864
No 35
>PRK00726 murG undecaprenyldiphospho-muramoylpentapeptide beta-N- acetylglucosaminyltransferase; Provisional
Probab=96.97 E-value=0.028 Score=47.29 Aligned_cols=115 Identities=21% Similarity=0.258 Sum_probs=65.9
Q ss_pred ceEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEcCCchhhhhhhccCCCccCCCCCceeEecCC-CCCCCCCCCCCCHH
Q 029508 9 AHAVCVPYPAQGHVSPMMQVAKLLHSKGFHITFVNTEFNHRRLIRSKGPEYVKGLPDFRFETIPD-GLPPSDRDATQDVP 87 (192)
Q Consensus 9 ~~Il~~p~p~~GH~~P~l~La~~La~rGh~VT~it~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~-~~~~~~~~~~~~~~ 87 (192)
.+|+++.....||..-++.|++.|.++||+|++++........ . ....+++++.++. +... .....
T Consensus 2 ~~i~i~~~g~gG~~~~~~~la~~L~~~g~ev~vv~~~~~~~~~--~------~~~~g~~~~~~~~~~~~~-----~~~~~ 68 (357)
T PRK00726 2 KKILLAGGGTGGHVFPALALAEELKKRGWEVLYLGTARGMEAR--L------VPKAGIEFHFIPSGGLRR-----KGSLA 68 (357)
T ss_pred cEEEEEcCcchHhhhHHHHHHHHHHhCCCEEEEEECCCchhhh--c------cccCCCcEEEEeccCcCC-----CChHH
Confidence 5788887766699999999999999999999999876522111 0 0002456665542 1111 01111
Q ss_pred HHHHHHHH-hCcHHHHHHHHHhhcCCCCCCCCeEEEEeCCCc-chH-HHHHHHhCCceEEe
Q 029508 88 ALSDSIRK-NGLAPFLELLGKLNSSADDQVPPVTCVVSDGIM-GFG-RKAAQMLGILDIQF 145 (192)
Q Consensus 88 ~~~~~~~~-~~~~~~~~ll~~l~~~~~~~~~~~d~vI~D~~~-~~~-~~vA~~lgIP~i~~ 145 (192)
.+...... ..-..+.+++++ .+||+|++.... .|. ..++...++|.+..
T Consensus 69 ~l~~~~~~~~~~~~~~~~ik~---------~~pDvv~~~~~~~~~~~~~~~~~~~~p~v~~ 120 (357)
T PRK00726 69 NLKAPFKLLKGVLQARKILKR---------FKPDVVVGFGGYVSGPGGLAARLLGIPLVIH 120 (357)
T ss_pred HHHHHHHHHHHHHHHHHHHHh---------cCCCEEEECCCcchhHHHHHHHHcCCCEEEE
Confidence 11111000 001123344443 479999998633 343 45567778999865
No 36
>TIGR00215 lpxB lipid-A-disaccharide synthase. Lipid-A precursor biosynthesis producing lipid A disaccharide in a condensation reaction. transcribed as part of an operon including lpxA
Probab=96.73 E-value=0.016 Score=49.84 Aligned_cols=37 Identities=14% Similarity=0.079 Sum_probs=32.3
Q ss_pred ceEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEcCCc
Q 029508 9 AHAVCVPYPAQGHVSPMMQVAKLLHSKGFHITFVNTEF 46 (192)
Q Consensus 9 ~~Il~~p~p~~GH~~P~l~La~~La~rGh~VT~it~~~ 46 (192)
.+|++...-..||+.|. .|+++|.++|++|+++....
T Consensus 6 ~ki~i~aGgtsGhi~pa-al~~~l~~~~~~~~~~g~gg 42 (385)
T TIGR00215 6 PTIALVAGEASGDILGA-GLRQQLKEHYPNARFIGVAG 42 (385)
T ss_pred CeEEEEeCCccHHHHHH-HHHHHHHhcCCCcEEEEEcc
Confidence 47787777777999999 99999999999999998664
No 37
>cd03818 GT1_ExpC_like This family is most closely related to the GT1 family of glycosyltransferases. ExpC in Rhizobium meliloti has been shown to be involved in the biosynthesis of galactoglucan (exopolysaccharide II).
Probab=96.32 E-value=0.089 Score=44.95 Aligned_cols=104 Identities=13% Similarity=0.117 Sum_probs=55.1
Q ss_pred HHHHHHHHHHhCCCeEEEEcCCchhhhhhhccCCCccCCCCCceeEecCCCCCCCCCCCCCCHHHHHHHHHHhCcHHHHH
Q 029508 24 PMMQVAKLLHSKGFHITFVNTEFNHRRLIRSKGPEYVKGLPDFRFETIPDGLPPSDRDATQDVPALSDSIRKNGLAPFLE 103 (192)
Q Consensus 24 P~l~La~~La~rGh~VT~it~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 103 (192)
++.+||++|+++||+|++++.......- . +++++.++..-.... ....-...+...... ....++
T Consensus 12 ~~~~la~~L~~~G~~v~~~~~~~~~~~~----------~--~v~~~~~~~~~~~~~-~~~~~~~~~~~~~~~-~~~~~~- 76 (396)
T cd03818 12 QFRHLAPALAAQGHEVVFLTEPNAAPPP----------G--GVRVVRYRPPRGPTS-GTHPYLREFEEAVLR-GQAVAR- 76 (396)
T ss_pred hHHHHHHHHHHCCCEEEEEecCCCCCCC----------C--CeeEEEecCCCCCCC-CCCccchhHHHHHHH-HHHHHH-
Confidence 4688999999999999999877643211 1 366666653111110 000001111111111 011122
Q ss_pred HHHHhhcCCCCCCCCeEEEEeCCCcchHHHHHHHh-CCceEEec
Q 029508 104 LLGKLNSSADDQVPPVTCVVSDGIMGFGRKAAQML-GILDIQFW 146 (192)
Q Consensus 104 ll~~l~~~~~~~~~~~d~vI~D~~~~~~~~vA~~l-gIP~i~~~ 146 (192)
.+..+.. . ..+||+|++...++++..+.+.+ ++|.+.+.
T Consensus 77 ~~~~~~~--~--~~~pdvi~~h~~~~~~~~l~~~~~~~~~v~~~ 116 (396)
T cd03818 77 ALLALRA--K--GFRPDVIVAHPGWGETLFLKDVWPDAPLIGYF 116 (396)
T ss_pred HHHHHHh--c--CCCCCEEEECCccchhhhHHHhCCCCCEEEEE
Confidence 2222211 1 15799999997666666777775 48888743
No 38
>PRK00025 lpxB lipid-A-disaccharide synthase; Reviewed
Probab=95.59 E-value=0.11 Score=44.02 Aligned_cols=37 Identities=14% Similarity=0.131 Sum_probs=30.5
Q ss_pred ceEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEcCCc
Q 029508 9 AHAVCVPYPAQGHVSPMMQVAKLLHSKGFHITFVNTEF 46 (192)
Q Consensus 9 ~~Il~~p~p~~GH~~P~l~La~~La~rGh~VT~it~~~ 46 (192)
.+|++...-..||+.|.. ++++|.++++++.++....
T Consensus 2 ~ki~i~~Ggt~G~i~~a~-l~~~L~~~~~~~~~~~~~~ 38 (380)
T PRK00025 2 LRIAIVAGEVSGDLLGAG-LIRALKARAPNLEFVGVGG 38 (380)
T ss_pred ceEEEEecCcCHHHHHHH-HHHHHHhcCCCcEEEEEcc
Confidence 378888877779999998 9999999888888876443
No 39
>TIGR03590 PseG pseudaminic acid biosynthesis-associated protein PseG. This protein is found in association with enzymes involved in the biosynthesis of pseudaminic acid, a component of polysaccharide in certain Pseudomonas strains as well as a modification of flagellin in Campylobacter and Hellicobacter. The role of this protein is unclear, although it may participate in N-acetylation in conjunction with, or in the absence of PseH (TIGR03585) as it often scores above the trusted cutoff to pfam00583 representing a family of acetyltransferases.
Probab=95.49 E-value=0.2 Score=41.20 Aligned_cols=32 Identities=25% Similarity=0.451 Sum_probs=28.3
Q ss_pred CCccChHHHHHHHHHHHhCCCeEEEEcCCchh
Q 029508 17 PAQGHVSPMMQVAKLLHSKGFHITFVNTEFNH 48 (192)
Q Consensus 17 p~~GH~~P~l~La~~La~rGh~VT~it~~~~~ 48 (192)
-|.||+.=++.||++|.++|++|+|++.....
T Consensus 12 iG~GHv~Rcl~LA~~l~~~g~~v~f~~~~~~~ 43 (279)
T TIGR03590 12 IGLGHVMRCLTLARALHAQGAEVAFACKPLPG 43 (279)
T ss_pred ccccHHHHHHHHHHHHHHCCCEEEEEeCCCCH
Confidence 46799999999999999999999999886533
No 40
>cd03823 GT1_ExpE7_like This family is most closely related to the GT1 family of glycosyltransferases. ExpE7 in Sinorhizobium meliloti has been shown to be involved in the biosynthesis of galactoglucans (exopolysaccharide II).
Probab=95.23 E-value=0.3 Score=39.78 Aligned_cols=30 Identities=13% Similarity=0.215 Sum_probs=25.9
Q ss_pred ccChHHHHHHHHHHHhCCCeEEEEcCCchh
Q 029508 19 QGHVSPMMQVAKLLHSKGFHITFVNTEFNH 48 (192)
Q Consensus 19 ~GH~~P~l~La~~La~rGh~VT~it~~~~~ 48 (192)
.|+-.-...++++|+++||+|+++++....
T Consensus 15 gG~~~~~~~l~~~L~~~g~~v~v~~~~~~~ 44 (359)
T cd03823 15 GGAEVVAHDLAEALAKRGHEVAVLTAGEDP 44 (359)
T ss_pred cchHHHHHHHHHHHHhcCCceEEEeCCCCC
Confidence 478888999999999999999999876543
No 41
>cd03816 GT1_ALG1_like This family is most closely related to the GT1 family of glycosyltransferases. The yeast gene ALG1 has been shown to function as a mannosyltransferase that catalyzes the formation of dolichol pyrophosphate (Dol-PP)-GlcNAc2Man from GDP-Man and Dol-PP-Glc-NAc2, and participates in the formation of the lipid-linked precursor oligosaccharide for N-glycosylation. In humans ALG1 has been associated with the congenital disorders of glycosylation (CDG) designated as subtype CDG-Ik.
Probab=95.14 E-value=0.53 Score=40.72 Aligned_cols=39 Identities=15% Similarity=0.153 Sum_probs=31.3
Q ss_pred CceEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEcCCc
Q 029508 8 KAHAVCVPYPAQGHVSPMMQVAKLLHSKGFHITFVNTEF 46 (192)
Q Consensus 8 ~~~Il~~p~p~~GH~~P~l~La~~La~rGh~VT~it~~~ 46 (192)
+.+|+++.....|+-.=+..+|+.|+++||+|++++...
T Consensus 3 ~~~~~~~~~~~~~~~~R~~~~a~~L~~~G~~V~ii~~~~ 41 (415)
T cd03816 3 RKRVCVLVLGDIGRSPRMQYHALSLAKHGWKVDLVGYLE 41 (415)
T ss_pred ccEEEEEEecccCCCHHHHHHHHHHHhcCceEEEEEecC
Confidence 346777777666776667889999999999999998654
No 42
>cd03800 GT1_Sucrose_synthase This family is most closely related to the GT1 family of glycosyltransferases. The sucrose-phosphate synthases in this family may be unique to plants and photosynthetic bacteria. This enzyme catalyzes the synthesis of sucrose 6-phosphate from fructose 6-phosphate and uridine 5'-diphosphate-glucose, a key regulatory step of sucrose metabolism. The activity of this enzyme is regulated by phosphorylation and moderated by the concentration of various metabolites and light.
Probab=95.09 E-value=0.15 Score=42.77 Aligned_cols=108 Identities=15% Similarity=0.166 Sum_probs=56.4
Q ss_pred ccChHHHHHHHHHHHhCCCeEEEEcCCchhhhhhhccCCCccCCCCCceeEecCCCCCCCCCCCCCCHHHHHHHHHHhCc
Q 029508 19 QGHVSPMMQVAKLLHSKGFHITFVNTEFNHRRLIRSKGPEYVKGLPDFRFETIPDGLPPSDRDATQDVPALSDSIRKNGL 98 (192)
Q Consensus 19 ~GH~~P~l~La~~La~rGh~VT~it~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (192)
.|+-..+.+|++.|+++||+|++++........... ....++.+..++.... . ...............
T Consensus 21 GG~~~~~~~l~~~L~~~g~~V~v~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~---- 88 (398)
T cd03800 21 GGQNVYVLELARALARLGHEVDIFTRRIDDALPPIV------ELAPGVRVVRVPAGPA-E-YLPKEELWPYLDEFA---- 88 (398)
T ss_pred CceeehHHHHHHHHhccCceEEEEEecCCcccCCcc------ccccceEEEecccccc-c-CCChhhcchhHHHHH----
Confidence 368789999999999999999999865432211000 1113466655542110 0 000000111111111
Q ss_pred HHHHHHHHHhhcCCCCCCCCeEEEEeCCCc-ch-HHHHHHHhCCceEEe
Q 029508 99 APFLELLGKLNSSADDQVPPVTCVVSDGIM-GF-GRKAAQMLGILDIQF 145 (192)
Q Consensus 99 ~~~~~ll~~l~~~~~~~~~~~d~vI~D~~~-~~-~~~vA~~lgIP~i~~ 145 (192)
..+.+.++... .++|+|+..... .+ +..+++.+|+|++..
T Consensus 89 ~~~~~~~~~~~-------~~~Div~~~~~~~~~~~~~~~~~~~~~~i~~ 130 (398)
T cd03800 89 DDLLRFLRREG-------GRPDLIHAHYWDSGLVALLLARRLGIPLVHT 130 (398)
T ss_pred HHHHHHHHhcC-------CCccEEEEecCccchHHHHHHhhcCCceEEE
Confidence 11222222210 179999987533 33 456788899998753
No 43
>COG4671 Predicted glycosyl transferase [General function prediction only]
Probab=94.97 E-value=0.23 Score=42.26 Aligned_cols=57 Identities=18% Similarity=0.331 Sum_probs=45.2
Q ss_pred CceEEEEcC--CCccChHHHHHHHHHHHhC--CCeEEEEcCCchhhhhhhccCCCccCCCCCceeEecCC
Q 029508 8 KAHAVCVPY--PAQGHVSPMMQVAKLLHSK--GFHITFVNTEFNHRRLIRSKGPEYVKGLPDFRFETIPD 73 (192)
Q Consensus 8 ~~~Il~~p~--p~~GH~~P~l~La~~La~r--Gh~VT~it~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~ 73 (192)
+.||+++.. .|-||+-=++.+|+.|++. |.+|+++++.....-. ..-.+++++.+|.
T Consensus 9 ~~Ri~~Yshd~~GlGHlrR~~~Ia~aLv~d~~~~~Il~IsG~~~~~~F---------~~~~gVd~V~LPs 69 (400)
T COG4671 9 RPRILFYSHDLLGLGHLRRALRIAHALVEDYLGFDILIISGGPPAGGF---------PGPAGVDFVKLPS 69 (400)
T ss_pred cceEEEEehhhccchHHHHHHHHHHHHhhcccCceEEEEeCCCccCCC---------CCcccCceEecCc
Confidence 449999987 6679999999999999997 9999999987654333 1114689999884
No 44
>PRK10307 putative glycosyl transferase; Provisional
Probab=94.52 E-value=0.57 Score=40.15 Aligned_cols=22 Identities=14% Similarity=0.288 Sum_probs=20.0
Q ss_pred HHHHHHHHHhCCCeEEEEcCCc
Q 029508 25 MMQVAKLLHSKGFHITFVNTEF 46 (192)
Q Consensus 25 ~l~La~~La~rGh~VT~it~~~ 46 (192)
+.+|++.|.++||+|+++++..
T Consensus 21 ~~~l~~~L~~~G~~V~vit~~~ 42 (412)
T PRK10307 21 TGEMAEWLAARGHEVRVITAPP 42 (412)
T ss_pred HHHHHHHHHHCCCeEEEEecCC
Confidence 5799999999999999999764
No 45
>PLN00142 sucrose synthase
Probab=94.32 E-value=0.45 Score=44.95 Aligned_cols=31 Identities=10% Similarity=0.020 Sum_probs=24.0
Q ss_pred CCeEEEEeCCCc-chH-HHHHHHhCCceEEecC
Q 029508 117 PPVTCVVSDGIM-GFG-RKAAQMLGILDIQFWT 147 (192)
Q Consensus 117 ~~~d~vI~D~~~-~~~-~~vA~~lgIP~i~~~t 147 (192)
.+||+|...+.. +++ ..+++++|||.+...-
T Consensus 407 ~~PDlIHaHYwdsg~vA~~La~~lgVP~v~T~H 439 (815)
T PLN00142 407 GKPDLIIGNYSDGNLVASLLAHKLGVTQCTIAH 439 (815)
T ss_pred CCCCEEEECCccHHHHHHHHHHHhCCCEEEEcc
Confidence 479999998755 344 5899999999986543
No 46
>PF13477 Glyco_trans_4_2: Glycosyl transferase 4-like
Probab=94.26 E-value=0.94 Score=32.38 Aligned_cols=103 Identities=9% Similarity=0.085 Sum_probs=58.6
Q ss_pred eEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEcCCchhhhhhhccCCCccCCCCCceeEecCCCCCCCCCCCCCCHHHH
Q 029508 10 HAVCVPYPAQGHVSPMMQVAKLLHSKGFHITFVNTEFNHRRLIRSKGPEYVKGLPDFRFETIPDGLPPSDRDATQDVPAL 89 (192)
Q Consensus 10 ~Il~~p~p~~GH~~P~l~La~~La~rGh~VT~it~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~ 89 (192)
+|+++......| ..++++.|.++|++|++++......... ...++++..++.+. .... .+
T Consensus 1 KIl~i~~~~~~~---~~~~~~~L~~~g~~V~ii~~~~~~~~~~---------~~~~i~~~~~~~~~-------k~~~-~~ 60 (139)
T PF13477_consen 1 KILLIGNTPSTF---IYNLAKELKKRGYDVHIITPRNDYEKYE---------IIEGIKVIRLPSPR-------KSPL-NY 60 (139)
T ss_pred CEEEEecCcHHH---HHHHHHHHHHCCCEEEEEEcCCCchhhh---------HhCCeEEEEecCCC-------CccH-HH
Confidence 356665544444 5688999999999999999855432221 11356776664211 0111 11
Q ss_pred HHHHHHhCcHHHHHHHHHhhcCCCCCCCCeEEEEeCCCcc-hH-H-HHHHHhC-CceEEecC
Q 029508 90 SDSIRKNGLAPFLELLGKLNSSADDQVPPVTCVVSDGIMG-FG-R-KAAQMLG-ILDIQFWT 147 (192)
Q Consensus 90 ~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~d~vI~D~~~~-~~-~-~vA~~lg-IP~i~~~t 147 (192)
+. . . .+.+++++ .+||+|.+-...+ +. . ..+...| +|.+...-
T Consensus 61 ~~-~----~-~l~k~ik~---------~~~DvIh~h~~~~~~~~~~l~~~~~~~~~~i~~~h 107 (139)
T PF13477_consen 61 IK-Y----F-RLRKIIKK---------EKPDVIHCHTPSPYGLFAMLAKKLLKNKKVIYTVH 107 (139)
T ss_pred HH-H----H-HHHHHhcc---------CCCCEEEEecCChHHHHHHHHHHHcCCCCEEEEec
Confidence 11 1 1 23455544 5799998876654 33 2 3446677 88874433
No 47
>PF12000 Glyco_trans_4_3: Gkycosyl transferase family 4 group; InterPro: IPR022623 This presumed domain is functionally uncharacterised and found in bacteria. This region is about 170 amino acids in length and is found N-terminal to PF00534 from PFAM. There is a single completely conserved residue G that may be functionally important.
Probab=93.87 E-value=0.72 Score=35.35 Aligned_cols=43 Identities=7% Similarity=0.007 Sum_probs=31.5
Q ss_pred HHHHHHHhhcCCCCCCCCeEEEEeCCCcchHHHHHHHh-CCceEEecC
Q 029508 101 FLELLGKLNSSADDQVPPVTCVVSDGIMGFGRKAAQML-GILDIQFWT 147 (192)
Q Consensus 101 ~~~ll~~l~~~~~~~~~~~d~vI~D~~~~~~~~vA~~l-gIP~i~~~t 147 (192)
+.+.+.+|++ .| -.||+||....++.+.-+-+.+ ++|.+.+.-
T Consensus 53 v~~a~~~L~~--~G--f~PDvI~~H~GWGe~Lflkdv~P~a~li~Y~E 96 (171)
T PF12000_consen 53 VARAARQLRA--QG--FVPDVIIAHPGWGETLFLKDVFPDAPLIGYFE 96 (171)
T ss_pred HHHHHHHHHH--cC--CCCCEEEEcCCcchhhhHHHhCCCCcEEEEEE
Confidence 3444555554 23 5789999998888888888888 899987653
No 48
>PF04007 DUF354: Protein of unknown function (DUF354); InterPro: IPR007152 Members of this family are around 350 amino acids in length. They are found in archaea and some bacteria and have no known function.
Probab=93.67 E-value=0.89 Score=38.61 Aligned_cols=113 Identities=17% Similarity=0.112 Sum_probs=67.4
Q ss_pred cChHHHHHHHHHHHhCCCeEEEEcCCchh-hhhhhccCCCccCCCCCceeEecCCCCCCCCCCCCCCHHHHHHHHHHhCc
Q 029508 20 GHVSPMMQVAKLLHSKGFHITFVNTEFNH-RRLIRSKGPEYVKGLPDFRFETIPDGLPPSDRDATQDVPALSDSIRKNGL 98 (192)
Q Consensus 20 GH~~P~l~La~~La~rGh~VT~it~~~~~-~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (192)
-|+.-+..+.++|.++||+|.+.+-.... ..+.+. -++++..+...- . .....+.....+
T Consensus 11 ~hvhfFk~~I~eL~~~GheV~it~R~~~~~~~LL~~---------yg~~y~~iG~~g-~------~~~~Kl~~~~~R--- 71 (335)
T PF04007_consen 11 AHVHFFKNIIRELEKRGHEVLITARDKDETEELLDL---------YGIDYIVIGKHG-D------SLYGKLLESIER--- 71 (335)
T ss_pred hHHHHHHHHHHHHHhCCCEEEEEEeccchHHHHHHH---------cCCCeEEEcCCC-C------CHHHHHHHHHHH---
Confidence 48999999999999999999988765321 122221 256666664311 1 111112222111
Q ss_pred HHHHHHHHHhhcCCCCCCCCeEEEEeCCCcchHHHHHHHhCCceEEecCCchHHHHHHHhHH
Q 029508 99 APFLELLGKLNSSADDQVPPVTCVVSDGIMGFGRKAAQMLGILDIQFWTASACGMMGYLQHV 160 (192)
Q Consensus 99 ~~~~~ll~~l~~~~~~~~~~~d~vI~D~~~~~~~~vA~~lgIP~i~~~t~~a~~~~~~~~lp 160 (192)
..++++...+ .+||++|+- ....+..+|.-+|+|++.|.=.........+.+|
T Consensus 72 --~~~l~~~~~~------~~pDv~is~-~s~~a~~va~~lgiP~I~f~D~e~a~~~~~Lt~P 124 (335)
T PF04007_consen 72 --QYKLLKLIKK------FKPDVAISF-GSPEAARVAFGLGIPSIVFNDTEHAIAQNRLTLP 124 (335)
T ss_pred --HHHHHHHHHh------hCCCEEEec-CcHHHHHHHHHhCCCeEEEecCchhhccceeehh
Confidence 2333333332 479999963 2355677999999999999887655443333344
No 49
>TIGR03449 mycothiol_MshA UDP-N-acetylglucosamine: 1L-myo-inositol-1-phosphate 1-alpha-D-N-acetylglucosaminyltransferase. Members of this protein family, found exclusively in the Actinobacteria, are MshA, the glycosyltransferase of mycothiol biosynthesis. Mycothiol replaces glutathione in these species.
Probab=93.26 E-value=1.1 Score=38.16 Aligned_cols=111 Identities=13% Similarity=0.079 Sum_probs=56.9
Q ss_pred ccChHHHHHHHHHHHhCCCeEEEEcCCchhhhhhhccCCCccCCCCCceeEecCCCCCCCCCCCCCCHHHHHHHHHHhCc
Q 029508 19 QGHVSPMMQVAKLLHSKGFHITFVNTEFNHRRLIRSKGPEYVKGLPDFRFETIPDGLPPSDRDATQDVPALSDSIRKNGL 98 (192)
Q Consensus 19 ~GH~~P~l~La~~La~rGh~VT~it~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (192)
.|--.-..+|+++|+++||+|+++++......- .. .....++++..++...-.+ . ........+..+ ..
T Consensus 20 GG~e~~v~~la~~L~~~G~~V~v~~~~~~~~~~-~~-----~~~~~~~~v~~~~~~~~~~-~-~~~~~~~~~~~~---~~ 88 (405)
T TIGR03449 20 GGMNVYILETATELARRGIEVDIFTRATRPSQP-PV-----VEVAPGVRVRNVVAGPYEG-L-DKEDLPTQLCAF---TG 88 (405)
T ss_pred CCceehHHHHHHHHhhCCCEEEEEecccCCCCC-Cc-----cccCCCcEEEEecCCCccc-C-CHHHHHHHHHHH---HH
Confidence 455577899999999999999999976432110 00 0112356666554211000 0 000111111111 11
Q ss_pred HHHHHHHHHhhcCCCCCCCCeEEEEeCCCc-ch-HHHHHHHhCCceEEecC
Q 029508 99 APFLELLGKLNSSADDQVPPVTCVVSDGIM-GF-GRKAAQMLGILDIQFWT 147 (192)
Q Consensus 99 ~~~~~ll~~l~~~~~~~~~~~d~vI~D~~~-~~-~~~vA~~lgIP~i~~~t 147 (192)
..++.+++... .++|+|-+.... .+ +..+++.+++|++...-
T Consensus 89 ~~~~~~~~~~~-------~~~Diih~h~~~~~~~~~~~~~~~~~p~v~t~h 132 (405)
T TIGR03449 89 GVLRAEARHEP-------GYYDLIHSHYWLSGQVGWLLRDRWGVPLVHTAH 132 (405)
T ss_pred HHHHHHhhccC-------CCCCeEEechHHHHHHHHHHHHhcCCCEEEecc
Confidence 12333333321 368998765432 23 45667788999886544
No 50
>TIGR02470 sucr_synth sucrose synthase. This model represents sucrose synthase, an enzyme that, despite its name, generally uses rather produces sucrose. Sucrose plus UDP (or ADP) becomes D-fructose plus UDP-glucose (or ADP-glucose), which is then available for cell wall (or starch) biosynthesis. The enzyme is homologous to sucrose phosphate synthase, which catalyzes the penultimate step in sucrose synthesis. Sucrose synthase is found, so far, exclusively in plants and cyanobacteria.
Probab=93.14 E-value=2.8 Score=39.64 Aligned_cols=118 Identities=13% Similarity=0.095 Sum_probs=59.4
Q ss_pred ccChHHHHHHHHH--------HHhCCC----eEEEEcCCchhhhhhhcc--CCCccCCCCCceeEecCCCCCCC-CCC--
Q 029508 19 QGHVSPMMQVAKL--------LHSKGF----HITFVNTEFNHRRLIRSK--GPEYVKGLPDFRFETIPDGLPPS-DRD-- 81 (192)
Q Consensus 19 ~GH~~P~l~La~~--------La~rGh----~VT~it~~~~~~~~~~~~--~~~~~~~~~~i~~~~l~~~~~~~-~~~-- 81 (192)
.|+..=.+++|++ |+++|| +|+++|--.....- ... ........++.++..+|.+-..+ ...
T Consensus 279 GGq~vYV~elaraL~~~~~~~La~~G~~v~~~V~I~TR~~~~~~~-~~~~~~~e~~~~~~~~~I~rvp~g~~~~~~~~~~ 357 (784)
T TIGR02470 279 GGQVVYILDQVRALENEMLQRIKLQGLEITPKILIVTRLIPDAEG-TTCNQRLEKVYGTEHAWILRVPFRTENGIILRNW 357 (784)
T ss_pred CCceeHHHHHHHHHHHHHHHHHHhcCCCccceEEEEecCCCCccc-cccccccccccCCCceEEEEecCCCCcccccccc
Confidence 3566567777776 568999 77788754321100 000 00111223467777777533221 011
Q ss_pred -CCCCHHHHHHHHHHhCcHHHHHHHHHhhcCCCCCCCCeEEEEeCCCc-ch-HHHHHHHhCCceE-EecC
Q 029508 82 -ATQDVPALSDSIRKNGLAPFLELLGKLNSSADDQVPPVTCVVSDGIM-GF-GRKAAQMLGILDI-QFWT 147 (192)
Q Consensus 82 -~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~d~vI~D~~~-~~-~~~vA~~lgIP~i-~~~t 147 (192)
...++..++..+. ....+.+..+.. .+||+|+.-... ++ +..+|+++|||.+ ++++
T Consensus 358 i~k~~l~p~l~~f~---~~~~~~~~~~~~-------~~pDlIHahy~d~glva~lla~~lgVP~v~t~Hs 417 (784)
T TIGR02470 358 ISRFEIWPYLETFA---EDAEKEILAELQ-------GKPDLIIGNYSDGNLVASLLARKLGVTQCTIAHA 417 (784)
T ss_pred cCHHHHHHHHHHHH---HHHHHHHHHhcC-------CCCCEEEECCCchHHHHHHHHHhcCCCEEEECCc
Confidence 1122222333222 122222322221 479999997754 34 3588999999955 4443
No 51
>cd03805 GT1_ALG2_like This family is most closely related to the GT1 family of glycosyltransferases. ALG2, a 1,3-mannosyltransferase, in yeast catalyzes the mannosylation of Man(2)GlcNAc(2)-dolichol diphosphate and Man(1)GlcNAc(2)-dolichol diphosphate to form Man(3)GlcNAc(2)-dolichol diphosphate. A deficiency of this enzyme causes an abnormal accumulation of Man1GlcNAc2-PP-dolichol and Man2GlcNAc2-PP-dolichol, which is associated with a type of congenital disorders of glycosylation (CDG), designated CDG-Ii, in humans.
Probab=91.93 E-value=3.6 Score=34.58 Aligned_cols=36 Identities=19% Similarity=0.314 Sum_probs=25.7
Q ss_pred eEEEE-cCCCcc-ChHHHHHHHHHHHhCCCeEEEEcCC
Q 029508 10 HAVCV-PYPAQG-HVSPMMQVAKLLHSKGFHITFVNTE 45 (192)
Q Consensus 10 ~Il~~-p~p~~G-H~~P~l~La~~La~rGh~VT~it~~ 45 (192)
+|+++ |....| =-.-+..||++|+++||+|++++..
T Consensus 2 kIl~~~~~~~~gG~e~~~~~la~~L~~~G~~V~v~~~~ 39 (392)
T cd03805 2 RVAFIHPDLGIGGAERLVVDAALALQSRGHEVTIYTSH 39 (392)
T ss_pred eEEEECCCCCCchHHHHHHHHHHHHHhCCCeEEEEcCC
Confidence 56644 333333 2245689999999999999999975
No 52
>TIGR02468 sucrsPsyn_pln sucrose phosphate synthase/possible sucrose phosphate phosphatase, plant. Members of this family are sucrose-phosphate synthases of plants. This enzyme is known to exist in multigene families in several species of both monocots and dicots. The N-terminal domain is the glucosyltransferase domain. Members of this family also have a variable linker region and a C-terminal domain that resembles sucrose phosphate phosphatase (SPP) (EC 3.1.3.24) (see TIGR01485), the next and final enzyme of sucrose biosynthesis. The SPP-like domain likely serves a binding and not a catalytic function, as the reported SPP is always encoded by a distinct protein.
Probab=91.72 E-value=2.4 Score=41.27 Aligned_cols=124 Identities=12% Similarity=0.072 Sum_probs=61.8
Q ss_pred cChHHHHHHHHHHHhCC--CeEEEEcCCchhhhhhhc-------cCC-------CccCCCCCceeEecCCCCCCCCCCCC
Q 029508 20 GHVSPMMQVAKLLHSKG--FHITFVNTEFNHRRLIRS-------KGP-------EYVKGLPDFRFETIPDGLPPSDRDAT 83 (192)
Q Consensus 20 GH~~P~l~La~~La~rG--h~VT~it~~~~~~~~~~~-------~~~-------~~~~~~~~i~~~~l~~~~~~~~~~~~ 83 (192)
|+..=.++||++|+++| |+|+++|-......+... .++ ......++++++.+|.+-... .-..
T Consensus 196 Gq~vYV~ELAraLa~~~gv~~Vdl~TR~~~~~~~~~~y~~p~e~~~~~~~~~~~~~~~~~~g~rIvRip~GP~~~-~l~K 274 (1050)
T TIGR02468 196 GQVKYVVELARALGSMPGVYRVDLLTRQVSSPDVDWSYGEPTEMLTPRSSENDGDEMGESSGAYIIRIPFGPRDK-YIPK 274 (1050)
T ss_pred ChHHHHHHHHHHHHhCCCCCEEEEEeCCcCccccccccCCccccccccccccccccccCCCCeEEEEeccCCCCC-CcCH
Confidence 45556789999999998 899999864332211000 000 000112366777776543211 1112
Q ss_pred CCHHHHHHHHHHhCcHHHHH----HHHHhhcCCCCCCCCeEEEEeCCCc-chH-HHHHHHhCCceEEecC
Q 029508 84 QDVPALSDSIRKNGLAPFLE----LLGKLNSSADDQVPPVTCVVSDGIM-GFG-RKAAQMLGILDIQFWT 147 (192)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~----ll~~l~~~~~~~~~~~d~vI~D~~~-~~~-~~vA~~lgIP~i~~~t 147 (192)
..+..++..+...+...+.+ +.+++.. ++...||+|-.-... +++ ..+++.+|||.+...-
T Consensus 275 e~L~~~l~ef~d~~l~~~~~~~~~~~~~~~~---~~~~~pDvIHaHyw~sG~aa~~L~~~lgVP~V~T~H 341 (1050)
T TIGR02468 275 EELWPYIPEFVDGALSHIVNMSKVLGEQIGS---GHPVWPYVIHGHYADAGDSAALLSGALNVPMVLTGH 341 (1050)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhhhhhcc---ccCCCCCEEEECcchHHHHHHHHHHhhCCCEEEECc
Confidence 22333333332221122221 1222211 001248999987644 444 5788999999875433
No 53
>TIGR02472 sucr_P_syn_N sucrose-phosphate synthase, putative, glycosyltransferase domain. This family consists of the N-terminal regions, or in some cases the entirety, of bacterial proteins closely related to plant sucrose-phosphate synthases (SPS). The C-terminal domain (TIGR02471), found with most members of this family, resembles both bona fide plant sucrose-phosphate phosphatases (SPP) and the SPP-like domain of plant SPS. At least two members of this family lack the SPP-like domain, which may have binding or regulatory rather than enzymatic activity by analogy to plant SPS. This enzyme produces sucrose 6-phosphate and UDP from UDP-glucose and D-fructose 6-phosphate, and may be encoded near the gene for fructokinase.
Probab=91.48 E-value=3.2 Score=36.12 Aligned_cols=111 Identities=14% Similarity=0.147 Sum_probs=54.2
Q ss_pred HHHHHHHHHHHhCCC--eEEEEcCCchhhhhhhccCCCccCCCCCceeEecCCCCCCCCCCCCCCHHHHHHHHHHhCcHH
Q 029508 23 SPMMQVAKLLHSKGF--HITFVNTEFNHRRLIRSKGPEYVKGLPDFRFETIPDGLPPSDRDATQDVPALSDSIRKNGLAP 100 (192)
Q Consensus 23 ~P~l~La~~La~rGh--~VT~it~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (192)
.=+.+|+++|+++|| +|+++|............+........+++++.++.+-. ......+...++..+ ...
T Consensus 30 ~~v~~La~~L~~~G~~~~V~v~t~~~~~~~~~~~~~~~~~~~~~gv~v~r~~~~~~--~~~~~~~~~~~~~~~----~~~ 103 (439)
T TIGR02472 30 KYVLELARALARRSEVEQVDLVTRLIKDAKVSPDYAQPIERIAPGARIVRLPFGPR--RYLRKELLWPYLDEL----ADN 103 (439)
T ss_pred hHHHHHHHHHHhCCCCcEEEEEeccccCcCCCCccCCCeeEeCCCcEEEEecCCCC--CCcChhhhhhhHHHH----HHH
Confidence 457899999999997 999999642111000000000001113566666653111 000011111111111 122
Q ss_pred HHHHHHHhhcCCCCCCCCeEEEEeCCCc-ch-HHHHHHHhCCceEEec
Q 029508 101 FLELLGKLNSSADDQVPPVTCVVSDGIM-GF-GRKAAQMLGILDIQFW 146 (192)
Q Consensus 101 ~~~ll~~l~~~~~~~~~~~d~vI~D~~~-~~-~~~vA~~lgIP~i~~~ 146 (192)
+.+++++.. .+||+|-+-... .+ +..+++.+|+|++...
T Consensus 104 l~~~~~~~~-------~~~DvIH~h~~~~~~~~~~~~~~~~~p~V~t~ 144 (439)
T TIGR02472 104 LLQHLRQQG-------HLPDLIHAHYADAGYVGARLSRLLGVPLIFTG 144 (439)
T ss_pred HHHHHHHcC-------CCCCEEEEcchhHHHHHHHHHHHhCCCEEEec
Confidence 334444311 369999987533 33 3456778899997644
No 54
>cd03819 GT1_WavL_like This family is most closely related to the GT1 family of glycosyltransferases. WavL in Vibrio cholerae has been shown to be involved in the biosynthesis of the lipopolysaccharide core.
Probab=90.16 E-value=5.3 Score=32.79 Aligned_cols=97 Identities=12% Similarity=0.060 Sum_probs=53.3
Q ss_pred cChHHHHHHHHHHHhCCCeEEEEcCCchhhhhhhccCCCccCCCCCceeEecCCCCCCCCCCCCCCHHHHHHHHHHhCcH
Q 029508 20 GHVSPMMQVAKLLHSKGFHITFVNTEFNHRRLIRSKGPEYVKGLPDFRFETIPDGLPPSDRDATQDVPALSDSIRKNGLA 99 (192)
Q Consensus 20 GH~~P~l~La~~La~rGh~VT~it~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (192)
|--.-..+|++.|+++||+|++++........... .+++++.++. .. .......... .
T Consensus 11 G~e~~~~~l~~~L~~~g~~v~v~~~~~~~~~~~~~---------~~~~~~~~~~--~~------~~~~~~~~~~-----~ 68 (355)
T cd03819 11 GVERGTLELARALVERGHRSLVASAGGRLVAELEA---------EGSRHIKLPF--IS------KNPLRILLNV-----A 68 (355)
T ss_pred cHHHHHHHHHHHHHHcCCEEEEEcCCCchHHHHHh---------cCCeEEEccc--cc------cchhhhHHHH-----H
Confidence 44466889999999999999999875432211111 1345544431 00 0010111111 1
Q ss_pred HHHHHHHHhhcCCCCCCCCeEEEEeCCCc-chHH-HHHHHhCCceEEecC
Q 029508 100 PFLELLGKLNSSADDQVPPVTCVVSDGIM-GFGR-KAAQMLGILDIQFWT 147 (192)
Q Consensus 100 ~~~~ll~~l~~~~~~~~~~~d~vI~D~~~-~~~~-~vA~~lgIP~i~~~t 147 (192)
.+..++++ .++|+|+..... .|.. ..+..+++|.+....
T Consensus 69 ~l~~~~~~---------~~~dii~~~~~~~~~~~~~~~~~~~~~~i~~~h 109 (355)
T cd03819 69 RLRRLIRE---------EKVDIVHARSRAPAWSAYLAARRTRPPFVTTVH 109 (355)
T ss_pred HHHHHHHH---------cCCCEEEECCCchhHHHHHHHHhcCCCEEEEeC
Confidence 12333433 479999986533 4543 456778999886544
No 55
>cd03802 GT1_AviGT4_like This family is most closely related to the GT1 family of glycosyltransferases. aviGT4 in Streptomyces viridochromogenes has been shown to be involved in biosynthesis of oligosaccharide antibiotic avilamycin A. Inactivation of aviGT4 resulted in a mutant that accumulated a novel avilamycin derivative lacking the terminal eurekanate residue.
Probab=89.79 E-value=4.3 Score=33.00 Aligned_cols=28 Identities=14% Similarity=0.234 Sum_probs=23.4
Q ss_pred cChHHHHHHHHHHHhCCCeEEEEcCCch
Q 029508 20 GHVSPMMQVAKLLHSKGFHITFVNTEFN 47 (192)
Q Consensus 20 GH~~P~l~La~~La~rGh~VT~it~~~~ 47 (192)
|--.-...|++.|.++||+|++++....
T Consensus 20 G~~~~~~~l~~~L~~~g~~V~v~~~~~~ 47 (335)
T cd03802 20 GTERVVAALTEGLVARGHEVTLFASGDS 47 (335)
T ss_pred cHHHHHHHHHHHHHhcCceEEEEecCCC
Confidence 4456789999999999999999987543
No 56
>cd03796 GT1_PIG-A_like This family is most closely related to the GT1 family of glycosyltransferases. Phosphatidylinositol glycan-class A (PIG-A), an X-linked gene in humans, is necessary for the synthesis of N-acetylglucosaminyl-phosphatidylinositol, a very early intermediate in glycosyl phosphatidylinositol (GPI)-anchor biosynthesis. The GPI-anchor is an important cellular structure that facilitates the attachment of many proteins to cell surfaces. Somatic mutations in PIG-A have been associated with Paroxysmal Nocturnal Hemoglobinuria (PNH), an acquired hematological disorder.
Probab=89.15 E-value=5.5 Score=33.97 Aligned_cols=27 Identities=15% Similarity=0.424 Sum_probs=22.8
Q ss_pred cChHHHHHHHHHHHhCCCeEEEEcCCc
Q 029508 20 GHVSPMMQVAKLLHSKGFHITFVNTEF 46 (192)
Q Consensus 20 GH~~P~l~La~~La~rGh~VT~it~~~ 46 (192)
|--.-...|++.|+++||+|+++++..
T Consensus 15 G~e~~~~~la~~L~~~G~~V~v~~~~~ 41 (398)
T cd03796 15 GVETHIYQLSQCLIKRGHKVVVITHAY 41 (398)
T ss_pred cHHHHHHHHHHHHHHcCCeeEEEeccC
Confidence 444678999999999999999999753
No 57
>PF13579 Glyco_trans_4_4: Glycosyl transferase 4-like domain; PDB: 3C4Q_B 3C4V_A 3C48_B 1Z2T_A.
Probab=88.97 E-value=0.43 Score=34.24 Aligned_cols=98 Identities=16% Similarity=0.141 Sum_probs=45.5
Q ss_pred HHHHHHHHHHhCCCeEEEEcCCchhhhhhhccCCCccCCCCCceeEecCCCCCCCCCCCCCCHHHHHHHHHHhCcHHHHH
Q 029508 24 PMMQVAKLLHSKGFHITFVNTEFNHRRLIRSKGPEYVKGLPDFRFETIPDGLPPSDRDATQDVPALSDSIRKNGLAPFLE 103 (192)
Q Consensus 24 P~l~La~~La~rGh~VT~it~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 103 (192)
-+.+|+++|+++||+|++++......... . ...++++..++- +... .... ..... ..+.+
T Consensus 6 ~~~~l~~~L~~~G~~V~v~~~~~~~~~~~-~-------~~~~~~~~~~~~--~~~~----~~~~-~~~~~-----~~~~~ 65 (160)
T PF13579_consen 6 YVRELARALAARGHEVTVVTPQPDPEDDE-E-------EEDGVRVHRLPL--PRRP----WPLR-LLRFL-----RRLRR 65 (160)
T ss_dssp HHHHHHHHHHHTT-EEEEEEE---GGG-S-E-------EETTEEEEEE----S-SS----SGGG-HCCHH-----HHHHH
T ss_pred HHHHHHHHHHHCCCEEEEEecCCCCcccc-c-------ccCCceEEeccC--Cccc----hhhh-hHHHH-----HHHHH
Confidence 36789999999999999999655443210 0 113467776652 1100 0000 00000 12233
Q ss_pred HHHHhhcCCCCCCCCeEEEEeCCCc-chHHHHHH-HhCCceEEecCC
Q 029508 104 LLGKLNSSADDQVPPVTCVVSDGIM-GFGRKAAQ-MLGILDIQFWTA 148 (192)
Q Consensus 104 ll~~l~~~~~~~~~~~d~vI~D~~~-~~~~~vA~-~lgIP~i~~~t~ 148 (192)
++.. .+ .++|+|...... .+...+++ ..++|.+.-.-.
T Consensus 66 ~l~~-~~------~~~Dvv~~~~~~~~~~~~~~~~~~~~p~v~~~h~ 105 (160)
T PF13579_consen 66 LLAA-RR------ERPDVVHAHSPTAGLVAALARRRRGIPLVVTVHG 105 (160)
T ss_dssp HCHH-CT---------SEEEEEHHHHHHHHHHHHHHHT--EEEE-SS
T ss_pred HHhh-hc------cCCeEEEecccchhHHHHHHHHccCCcEEEEECC
Confidence 4411 22 589999887643 33345555 889999876544
No 58
>cd03814 GT1_like_2 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=88.40 E-value=0.83 Score=37.31 Aligned_cols=30 Identities=13% Similarity=0.292 Sum_probs=26.8
Q ss_pred ccChHHHHHHHHHHHhCCCeEEEEcCCchh
Q 029508 19 QGHVSPMMQVAKLLHSKGFHITFVNTEFNH 48 (192)
Q Consensus 19 ~GH~~P~l~La~~La~rGh~VT~it~~~~~ 48 (192)
.|+-+.+..|+++|+++||+|++++.....
T Consensus 14 ~G~~~~~~~l~~~L~~~g~~v~~~~~~~~~ 43 (364)
T cd03814 14 NGVVRTLQRLVEHLRARGHEVLVIAPGPFR 43 (364)
T ss_pred cceehHHHHHHHHHHHCCCEEEEEeCCchh
Confidence 589999999999999999999999987543
No 59
>cd04962 GT1_like_5 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=88.24 E-value=0.62 Score=38.79 Aligned_cols=37 Identities=22% Similarity=0.357 Sum_probs=29.5
Q ss_pred eEEEEcCCCc-cChHHHHHHHHHHHhCCCeEEEEcCCc
Q 029508 10 HAVCVPYPAQ-GHVSPMMQVAKLLHSKGFHITFVNTEF 46 (192)
Q Consensus 10 ~Il~~p~p~~-GH~~P~l~La~~La~rGh~VT~it~~~ 46 (192)
+|+++..|.. |.-.-..++++.|+++||+|++++...
T Consensus 2 ki~~~~~p~~gG~~~~~~~la~~L~~~G~~v~v~~~~~ 39 (371)
T cd04962 2 KIGIVCYPTYGGSGVVATELGKALARRGHEVHFITSSR 39 (371)
T ss_pred ceeEEEEeCCCCccchHHHHHHHHHhcCCceEEEecCC
Confidence 5665555444 677789999999999999999998754
No 60
>cd03808 GT1_cap1E_like This family is most closely related to the GT1 family of glycosyltransferases. cap1E in Streptococcus pneumoniae is required for the synthesis of type 1 capsular polysaccharides.
Probab=88.23 E-value=0.69 Score=37.35 Aligned_cols=39 Identities=15% Similarity=0.198 Sum_probs=32.1
Q ss_pred eEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEcCCchh
Q 029508 10 HAVCVPYPAQGHVSPMMQVAKLLHSKGFHITFVNTEFNH 48 (192)
Q Consensus 10 ~Il~~p~p~~GH~~P~l~La~~La~rGh~VT~it~~~~~ 48 (192)
+|+++.....|+..-+.++++.|.++||+|++++.....
T Consensus 1 kIl~i~~~~~g~~~~~~~l~~~L~~~g~~v~~~~~~~~~ 39 (359)
T cd03808 1 KILHIVTVDGGLYSFRLPLIKALRAAGYEVHVVAPPGDE 39 (359)
T ss_pred CeeEEEecchhHHHHHHHHHHHHHhcCCeeEEEecCCCc
Confidence 466666556788888999999999999999999877544
No 61
>PF13439 Glyco_transf_4: Glycosyltransferase Family 4; PDB: 2JJM_E 3MBO_C 2GEJ_A 2GEK_A.
Probab=88.12 E-value=0.61 Score=34.06 Aligned_cols=29 Identities=21% Similarity=0.417 Sum_probs=22.5
Q ss_pred cChHHHHHHHHHHHhCCCeEEEEcCCchh
Q 029508 20 GHVSPMMQVAKLLHSKGFHITFVNTEFNH 48 (192)
Q Consensus 20 GH~~P~l~La~~La~rGh~VT~it~~~~~ 48 (192)
|=-.-+.+|+++|+++||+|++++.....
T Consensus 13 G~e~~~~~l~~~l~~~G~~v~v~~~~~~~ 41 (177)
T PF13439_consen 13 GAERVVLNLARALAKRGHEVTVVSPGVKD 41 (177)
T ss_dssp HHHHHHHHHHHHHHHTT-EEEEEESS-TT
T ss_pred hHHHHHHHHHHHHHHCCCEEEEEEcCCCc
Confidence 45567899999999999999999766443
No 62
>PRK13609 diacylglycerol glucosyltransferase; Provisional
Probab=87.95 E-value=0.8 Score=38.85 Aligned_cols=38 Identities=16% Similarity=0.237 Sum_probs=30.7
Q ss_pred CceEEEEcCC-CccChHHHHHHHHHHHhCCCeEEEEcCC
Q 029508 8 KAHAVCVPYP-AQGHVSPMMQVAKLLHSKGFHITFVNTE 45 (192)
Q Consensus 8 ~~~Il~~p~p-~~GH~~P~l~La~~La~rGh~VT~it~~ 45 (192)
..||++++.. |.||..+...|+++|.++||+|.+++..
T Consensus 4 ~~rili~t~~~G~GH~~~a~al~~~l~~~g~~~~~~~d~ 42 (380)
T PRK13609 4 NPKVLILTAHYGNGHVQVAKTLEQTFRQKGIKDVIVCDL 42 (380)
T ss_pred CCeEEEEEcCCCchHHHHHHHHHHHHHhcCCCcEEEEEh
Confidence 4578877764 4599999999999999999987776543
No 63
>cd03817 GT1_UGDG_like This family is most closely related to the GT1 family of glycosyltransferases. UDP-glucose-diacylglycerol glucosyltransferase (UGDG; also known as 1,2-diacylglycerol 3-glucosyltransferase) catalyzes the transfer of glucose from UDP-glucose to 1,2-diacylglycerol forming 3-D-glucosyl-1,2-diacylglycerol.
Probab=86.29 E-value=1.3 Score=36.12 Aligned_cols=33 Identities=15% Similarity=0.301 Sum_probs=27.8
Q ss_pred cCCCccChHHHHHHHHHHHhCCCeEEEEcCCch
Q 029508 15 PYPAQGHVSPMMQVAKLLHSKGFHITFVNTEFN 47 (192)
Q Consensus 15 p~p~~GH~~P~l~La~~La~rGh~VT~it~~~~ 47 (192)
|....|+-.-...+++.|+++||+|+++++...
T Consensus 10 ~p~~~G~~~~~~~l~~~L~~~g~~v~v~~~~~~ 42 (374)
T cd03817 10 LPQVNGVATSIRRLAEELEKRGHEVYVVAPSYP 42 (374)
T ss_pred cCCCCCeehHHHHHHHHHHHcCCeEEEEeCCCC
Confidence 434568999999999999999999999987653
No 64
>cd03794 GT1_wbuB_like This family is most closely related to the GT1 family of glycosyltransferases. wbuB in E. coli is involved in the biosynthesis of the O26 O-antigen. It has been proposed to function as an N-acetyl-L-fucosamine (L-FucNAc) transferase.
Probab=85.74 E-value=1.1 Score=36.66 Aligned_cols=30 Identities=20% Similarity=0.242 Sum_probs=26.3
Q ss_pred ccChHHHHHHHHHHHhCCCeEEEEcCCchh
Q 029508 19 QGHVSPMMQVAKLLHSKGFHITFVNTEFNH 48 (192)
Q Consensus 19 ~GH~~P~l~La~~La~rGh~VT~it~~~~~ 48 (192)
.|+-.-+..+++.|+++||+|++++.....
T Consensus 14 ~G~~~~~~~l~~~L~~~g~~v~~~~~~~~~ 43 (394)
T cd03794 14 GGGAFRTTELAEELVKRGHEVTVITGSPNY 43 (394)
T ss_pred CCcceeHHHHHHHHHhCCceEEEEecCCCc
Confidence 489999999999999999999999876543
No 65
>cd02067 B12-binding B12 binding domain (B12-BD). This domain binds different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide, it is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins.
Probab=85.41 E-value=2 Score=30.32 Aligned_cols=42 Identities=19% Similarity=0.266 Sum_probs=34.8
Q ss_pred eEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEcCCchhhhh
Q 029508 10 HAVCVPYPAQGHVSPMMQVAKLLHSKGFHITFVNTEFNHRRL 51 (192)
Q Consensus 10 ~Il~~p~p~~GH~~P~l~La~~La~rGh~VT~it~~~~~~~~ 51 (192)
++++.+.++-.|-....-++..|.++|++|.++......+.+
T Consensus 1 ~vl~~~~~~e~H~lG~~~~~~~l~~~G~~V~~lg~~~~~~~l 42 (119)
T cd02067 1 KVVIATVGGDGHDIGKNIVARALRDAGFEVIDLGVDVPPEEI 42 (119)
T ss_pred CEEEEeeCCchhhHHHHHHHHHHHHCCCEEEECCCCCCHHHH
Confidence 578889999999999999999999999999887765444333
No 66
>cd04951 GT1_WbdM_like This family is most closely related to the GT1 family of glycosyltransferases and is named after WbdM in Escherichia coli. In general glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have
Probab=83.80 E-value=1.2 Score=36.55 Aligned_cols=35 Identities=14% Similarity=0.264 Sum_probs=27.5
Q ss_pred EEEE-cCCC-ccChHHHHHHHHHHHhCCCeEEEEcCC
Q 029508 11 AVCV-PYPA-QGHVSPMMQVAKLLHSKGFHITFVNTE 45 (192)
Q Consensus 11 Il~~-p~p~-~GH~~P~l~La~~La~rGh~VT~it~~ 45 (192)
|+++ +..+ .|+-.....|++.|.++||+|++++..
T Consensus 2 il~~~~~~~~gG~~~~~~~l~~~L~~~g~~v~v~~~~ 38 (360)
T cd04951 2 ILYVITGLGLGGAEKQVVDLADQFVAKGHQVAIISLT 38 (360)
T ss_pred eEEEecCCCCCCHHHHHHHHHHhcccCCceEEEEEEe
Confidence 4444 3333 478899999999999999999999754
No 67
>PRK05749 3-deoxy-D-manno-octulosonic-acid transferase; Reviewed
Probab=82.66 E-value=10 Score=32.70 Aligned_cols=101 Identities=12% Similarity=0.015 Sum_probs=54.9
Q ss_pred eEEEEcCCCccChHHHHHHHHHHHhCCCe--EEEEcCCchhhhhhhccCCCccCCCCCceeEecCCCCCCCCCCCCCCHH
Q 029508 10 HAVCVPYPAQGHVSPMMQVAKLLHSKGFH--ITFVNTEFNHRRLIRSKGPEYVKGLPDFRFETIPDGLPPSDRDATQDVP 87 (192)
Q Consensus 10 ~Il~~p~p~~GH~~P~l~La~~La~rGh~--VT~it~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~ 87 (192)
+++-+=....|.+.-...|+++|.+++++ |.+.++......+.+... . ..+.+..+|.+.+
T Consensus 51 ~~iW~Ha~s~Ge~~~~~~l~~~l~~~~~~~~i~~t~~t~~~~~~~~~~~-----~-~~~~~~~~P~d~~----------- 113 (425)
T PRK05749 51 PLIWFHAVSVGETRAAIPLIRALRKRYPDLPILVTTMTPTGSERAQALF-----G-DDVEHRYLPYDLP----------- 113 (425)
T ss_pred CeEEEEeCCHHHHHHHHHHHHHHHHhCCCCcEEEeCCCccHHHHHHHhc-----C-CCceEEEecCCcH-----------
Confidence 34444445679999999999999998754 333322222222221110 0 1244444442111
Q ss_pred HHHHHHHHhCcHHHHHHHHHhhcCCCCCCCCeEEEEeCCCcch--HHHHHHHhCCceEEecC
Q 029508 88 ALSDSIRKNGLAPFLELLGKLNSSADDQVPPVTCVVSDGIMGF--GRKAAQMLGILDIQFWT 147 (192)
Q Consensus 88 ~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~d~vI~D~~~~~--~~~vA~~lgIP~i~~~t 147 (192)
..++++++. .+||+++.-....| ....+++.|+|.+..+.
T Consensus 114 -----------~~~~~~l~~---------~~Pd~v~~~~~~~~~~~l~~~~~~~ip~vl~~~ 155 (425)
T PRK05749 114 -----------GAVRRFLRF---------WRPKLVIIMETELWPNLIAELKRRGIPLVLANA 155 (425)
T ss_pred -----------HHHHHHHHh---------hCCCEEEEEecchhHHHHHHHHHCCCCEEEEec
Confidence 234566665 36888775322234 34556788999988643
No 68
>PLN02871 UDP-sulfoquinovose:DAG sulfoquinovosyltransferase
Probab=81.74 E-value=3 Score=36.55 Aligned_cols=40 Identities=18% Similarity=0.172 Sum_probs=29.6
Q ss_pred CCceEEEEcCC----Cc-cChHHHHHHHHHHHhCCCeEEEEcCCc
Q 029508 7 RKAHAVCVPYP----AQ-GHVSPMMQVAKLLHSKGFHITFVNTEF 46 (192)
Q Consensus 7 ~~~~Il~~p~p----~~-GH~~P~l~La~~La~rGh~VT~it~~~ 46 (192)
.+.||+++..+ .. |=-+=+.+|++.|.++||+|+++++..
T Consensus 57 ~~mrI~~~~~~~~~~~~gG~~~~~~~l~~~L~~~G~eV~vlt~~~ 101 (465)
T PLN02871 57 RPRRIALFVEPSPFSYVSGYKNRFQNFIRYLREMGDEVLVVTTDE 101 (465)
T ss_pred CCceEEEEECCcCCcccccHHHHHHHHHHHHHHCCCeEEEEecCC
Confidence 46799977432 21 322567899999999999999999764
No 69
>cd03821 GT1_Bme6_like This family is most closely related to the GT1 family of glycosyltransferases. Bme6 in Brucella melitensis has been shown to be involved in the biosynthesis of a polysaccharide.
Probab=81.68 E-value=2.5 Score=34.35 Aligned_cols=31 Identities=23% Similarity=0.324 Sum_probs=26.6
Q ss_pred CccChHHHHHHHHHHHhCCCeEEEEcCCchh
Q 029508 18 AQGHVSPMMQVAKLLHSKGFHITFVNTEFNH 48 (192)
Q Consensus 18 ~~GH~~P~l~La~~La~rGh~VT~it~~~~~ 48 (192)
..|+..-...+++.|+++||+|+++++....
T Consensus 13 ~gG~~~~~~~l~~~L~~~g~~v~v~~~~~~~ 43 (375)
T cd03821 13 YGGPVRVVLNLSKALAKLGHEVTVATTDAGG 43 (375)
T ss_pred cCCeehHHHHHHHHHHhcCCcEEEEecCCCC
Confidence 3488899999999999999999999876543
No 70
>PLN02275 transferase, transferring glycosyl groups
Probab=80.47 E-value=34 Score=28.91 Aligned_cols=39 Identities=18% Similarity=0.077 Sum_probs=28.7
Q ss_pred CceEEEEcCCCccChHHHHHHHHHHHhCCC-eEEEEcCCc
Q 029508 8 KAHAVCVPYPAQGHVSPMMQVAKLLHSKGF-HITFVNTEF 46 (192)
Q Consensus 8 ~~~Il~~p~p~~GH~~P~l~La~~La~rGh-~VT~it~~~ 46 (192)
+.++.++..+-.|.---|..+++.|+++|| +|++++...
T Consensus 4 ~~~~~~~~~~~~g~~~r~~~~~~~l~~~~~~~v~vi~~~~ 43 (371)
T PLN02275 4 RGRAAVVVLGDFGRSPRMQYHALSLARQASFQVDVVAYGG 43 (371)
T ss_pred ccEEEEEEecCCCCCHHHHHHHHHHHhcCCceEEEEEecC
Confidence 334444444667777778999999999986 799997643
No 71
>PRK02261 methylaspartate mutase subunit S; Provisional
Probab=80.14 E-value=5.3 Score=29.30 Aligned_cols=45 Identities=18% Similarity=0.174 Sum_probs=38.9
Q ss_pred CceEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEcCCchhhhhh
Q 029508 8 KAHAVCVPYPAQGHVSPMMQVAKLLHSKGFHITFVNTEFNHRRLI 52 (192)
Q Consensus 8 ~~~Il~~p~p~~GH~~P~l~La~~La~rGh~VT~it~~~~~~~~~ 52 (192)
+.+|++...++-+|-.-..-++..|.++|++|+++......+.+.
T Consensus 3 ~~~vl~~~~~gD~H~lG~~iv~~~lr~~G~eVi~LG~~vp~e~i~ 47 (137)
T PRK02261 3 KKTVVLGVIGADCHAVGNKILDRALTEAGFEVINLGVMTSQEEFI 47 (137)
T ss_pred CCEEEEEeCCCChhHHHHHHHHHHHHHCCCEEEECCCCCCHHHHH
Confidence 568999999999999999999999999999999998876555553
No 72
>COG3980 spsG Spore coat polysaccharide biosynthesis protein, predicted glycosyltransferase [Cell envelope biogenesis, outer membrane]
Probab=80.11 E-value=2.3 Score=35.29 Aligned_cols=33 Identities=24% Similarity=0.386 Sum_probs=29.3
Q ss_pred CCccChHHHHHHHHHHHhCCCeEEEEcCCchhh
Q 029508 17 PAQGHVSPMMQVAKLLHSKGFHITFVNTEFNHR 49 (192)
Q Consensus 17 p~~GH~~P~l~La~~La~rGh~VT~it~~~~~~ 49 (192)
-|.||+.=++.||+.|..+|..+++++.....+
T Consensus 13 iGmGHV~R~l~LA~~l~k~~~~~~fl~k~~~e~ 45 (318)
T COG3980 13 IGMGHVMRTLTLARELEKRGFACLFLTKQDIEA 45 (318)
T ss_pred cCcchhhhHHHHHHHHHhcCceEEEecccchhh
Confidence 467999999999999999999999999887444
No 73
>PRK10422 lipopolysaccharide core biosynthesis protein; Provisional
Probab=77.43 E-value=27 Score=29.38 Aligned_cols=45 Identities=11% Similarity=0.006 Sum_probs=39.2
Q ss_pred CCceEEEEcCCCccChHHHHHHHHHHHhC--CCeEEEEcCCchhhhh
Q 029508 7 RKAHAVCVPYPAQGHVSPMMQVAKLLHSK--GFHITFVNTEFNHRRL 51 (192)
Q Consensus 7 ~~~~Il~~p~p~~GH~~P~l~La~~La~r--Gh~VT~it~~~~~~~~ 51 (192)
.+.+|+++-.-+.|.+.-...+.+.|.++ +.+|++++.+.+...+
T Consensus 4 ~~~~ILii~~~~iGD~vl~~P~l~~Lk~~~P~a~I~~l~~~~~~~l~ 50 (352)
T PRK10422 4 PFRRILIIKMRFHGDMLLTTPVISSLKKNYPDAKIDVLLYQDTIPIL 50 (352)
T ss_pred CCceEEEEEecccCceeeHHHHHHHHHHHCCCCeEEEEeccChHHHh
Confidence 45689999999999999999999999986 8999999988777644
No 74
>cd03825 GT1_wcfI_like This family is most closely related to the GT1 family of glycosyltransferases. wcfI in Bacteroides fragilis has been shown to be involved in the capsular polysaccharide biosynthesis.
Probab=77.15 E-value=4 Score=33.55 Aligned_cols=38 Identities=13% Similarity=0.202 Sum_probs=30.5
Q ss_pred eEEEEcC-CC-ccChHHHHHHHHHHHhCCCeEEEEcCCch
Q 029508 10 HAVCVPY-PA-QGHVSPMMQVAKLLHSKGFHITFVNTEFN 47 (192)
Q Consensus 10 ~Il~~p~-p~-~GH~~P~l~La~~La~rGh~VT~it~~~~ 47 (192)
||+++.. .+ .|+-.-...+++.|.++||+|++++....
T Consensus 2 kIl~~~~~~~~gG~~~~~~~l~~~l~~~G~~v~v~~~~~~ 41 (365)
T cd03825 2 KVLHLNTSDISGGAARAAYRLHRALQAAGVDSTMLVQEKK 41 (365)
T ss_pred eEEEEecCCCCCcHHHHHHHHHHHHHhcCCceeEEEeecc
Confidence 5665544 34 57888999999999999999999987654
No 75
>cd03811 GT1_WabH_like This family is most closely related to the GT1 family of glycosyltransferases. WabH in Klebsiella pneumoniae has been shown to transfer a GlcNAc residue from UDP-GlcNAc onto the acceptor GalUA residue in the cellular outer core.
Probab=76.74 E-value=4.5 Score=32.34 Aligned_cols=38 Identities=18% Similarity=0.237 Sum_probs=29.6
Q ss_pred EEEEcC--CCccChHHHHHHHHHHHhCCCeEEEEcCCchh
Q 029508 11 AVCVPY--PAQGHVSPMMQVAKLLHSKGFHITFVNTEFNH 48 (192)
Q Consensus 11 Il~~p~--p~~GH~~P~l~La~~La~rGh~VT~it~~~~~ 48 (192)
|+++.. +..|+-.-+..+++.|.++||+|++++.....
T Consensus 2 Il~~~~~~~~gG~~~~~~~l~~~l~~~g~~v~v~~~~~~~ 41 (353)
T cd03811 2 ILFVIPSLGGGGAERVLLNLANGLDKRGYDVTLVVLRDEG 41 (353)
T ss_pred eEEEeecccCCCcchhHHHHHHHHHhcCceEEEEEcCCCC
Confidence 444433 35678888999999999999999999876543
No 76
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=76.29 E-value=31 Score=26.05 Aligned_cols=34 Identities=12% Similarity=0.179 Sum_probs=30.1
Q ss_pred ceEEEEcCCCccChHHHHHHHHHHHhCCCeEEEE
Q 029508 9 AHAVCVPYPAQGHVSPMMQVAKLLHSKGFHITFV 42 (192)
Q Consensus 9 ~~Il~~p~p~~GH~~P~l~La~~La~rGh~VT~i 42 (192)
.-|.++..+|.|=....+.+|-+.+.+|++|.++
T Consensus 3 G~i~vy~g~G~Gkt~~a~g~~~ra~~~g~~v~~v 36 (159)
T cd00561 3 GLIQVYTGNGKGKTTAALGLALRALGHGYRVGVV 36 (159)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEE
Confidence 3577899999999999999999999999999993
No 77
>cd01635 Glycosyltransferase_GTB_type Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. The structures of the formed glycoconjugates are extremely diverse, reflecting a wide range of biological functions. The members of this family share a common GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=75.96 E-value=4.5 Score=30.42 Aligned_cols=26 Identities=23% Similarity=0.383 Sum_probs=24.5
Q ss_pred CccChHHHHHHHHHHHhCCCeEEEEc
Q 029508 18 AQGHVSPMMQVAKLLHSKGFHITFVN 43 (192)
Q Consensus 18 ~~GH~~P~l~La~~La~rGh~VT~it 43 (192)
..|+-.....|++.|.++||+|+++.
T Consensus 12 ~~G~~~~~~~l~~~L~~~g~~v~v~~ 37 (229)
T cd01635 12 GGGVELVLLDLAKALARRGHEVEVVA 37 (229)
T ss_pred CCCchhHHHHHHHHHHHcCCeEEEEE
Confidence 56999999999999999999999998
No 78
>PRK00654 glgA glycogen synthase; Provisional
Probab=75.43 E-value=4.7 Score=35.47 Aligned_cols=26 Identities=15% Similarity=0.160 Sum_probs=22.3
Q ss_pred cChHHHHHHHHHHHhCCCeEEEEcCC
Q 029508 20 GHVSPMMQVAKLLHSKGFHITFVNTE 45 (192)
Q Consensus 20 GH~~P~l~La~~La~rGh~VT~it~~ 45 (192)
|.-.-.-.|+++|+++||+|+++++.
T Consensus 18 Gl~~~v~~L~~~L~~~G~~V~v~~p~ 43 (466)
T PRK00654 18 GLGDVVGALPKALAALGHDVRVLLPG 43 (466)
T ss_pred cHHHHHHHHHHHHHHCCCcEEEEecC
Confidence 45566789999999999999999964
No 79
>COG1519 KdtA 3-deoxy-D-manno-octulosonic-acid transferase [Cell envelope biogenesis, outer membrane]
Probab=75.31 E-value=57 Score=28.66 Aligned_cols=113 Identities=14% Similarity=0.098 Sum_probs=68.9
Q ss_pred EEEEcCCCccChHHHHHHHHHHHhC--CCeEEEEc-CCchhhhhhhccCCCccCCCCCceeEecCCCCCCCCCCCCCCHH
Q 029508 11 AVCVPYPAQGHVSPMMQVAKLLHSK--GFHITFVN-TEFNHRRLIRSKGPEYVKGLPDFRFETIPDGLPPSDRDATQDVP 87 (192)
Q Consensus 11 Il~~p~p~~GH~~P~l~La~~La~r--Gh~VT~it-~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~ 87 (192)
.+-+=..+.|=.+-...|.++|.++ +++|++.+ |+.-.+.+.+..+ ..+....+|-++
T Consensus 51 ~vWiHaaSVGEv~a~~pLv~~l~~~~P~~~ilvTt~T~Tg~e~a~~~~~-------~~v~h~YlP~D~------------ 111 (419)
T COG1519 51 LVWIHAASVGEVLAALPLVRALRERFPDLRILVTTMTPTGAERAAALFG-------DSVIHQYLPLDL------------ 111 (419)
T ss_pred eEEEEecchhHHHHHHHHHHHHHHhCCCCCEEEEecCccHHHHHHHHcC-------CCeEEEecCcCc------------
Confidence 4445556779999999999999998 88888877 4444444432211 124444444211
Q ss_pred HHHHHHHHhCcHHHHHHHHHhhcCCCCCCCCeE-EEEeCCCc-chHHHHHHHhCCceEEecC-CchHHHHHHHhHHH
Q 029508 88 ALSDSIRKNGLAPFLELLGKLNSSADDQVPPVT-CVVSDGIM-GFGRKAAQMLGILDIQFWT-ASACGMMGYLQHVE 161 (192)
Q Consensus 88 ~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~d-~vI~D~~~-~~~~~vA~~lgIP~i~~~t-~~a~~~~~~~~lp~ 161 (192)
...++++++.. +|| +||++.=+ +....-+++.|+|.+.... .+.-++.-|..+..
T Consensus 112 ----------~~~v~rFl~~~---------~P~l~Ii~EtElWPnli~e~~~~~~p~~LvNaRLS~rS~~~y~k~~~ 169 (419)
T COG1519 112 ----------PIAVRRFLRKW---------RPKLLIIMETELWPNLINELKRRGIPLVLVNARLSDRSFARYAKLKF 169 (419)
T ss_pred ----------hHHHHHHHHhc---------CCCEEEEEeccccHHHHHHHHHcCCCEEEEeeeechhhhHHHHHHHH
Confidence 22356677763 455 56666533 3345777899999998877 44444444544443
No 80
>cd03786 GT1_UDP-GlcNAc_2-Epimerase Bacterial members of the UDP-N-Acetylglucosamine (GlcNAc) 2-Epimerase family are known to catalyze the reversible interconversion of UDP-GlcNAc and UDP-N-acetylmannosamine (UDP-ManNAc). The enzyme serves to produce an activated form of ManNAc residues (UDP-ManNAc) for use in the biosynthesis of a variety of cell surface polysaccharides; The mammalian enzyme is bifunctional, catalyzing both the inversion of stereochemistry at C-2 and the hydrolysis of the UDP-sugar linkage to generate free ManNAc. It also catalyzes the phosphorylation of ManNAc to generate ManNAc 6-phosphate, a precursor to salic acids. In mammals, sialic acids are found at the termini of oligosaccharides in a large variety of cell surface glycoconjugates and are key mediators of cell-cell recognition events. Mutations in human members of this family have been associated with Sialuria, a rare disease caused by the disorders of sialic acid metabolism. This family belongs to the GT-B st
Probab=75.23 E-value=22 Score=29.52 Aligned_cols=34 Identities=18% Similarity=0.311 Sum_probs=24.2
Q ss_pred EEEEcCCCccChHHHHHHHHHHHhC-CCeEEEEcCC
Q 029508 11 AVCVPYPAQGHVSPMMQVAKLLHSK-GFHITFVNTE 45 (192)
Q Consensus 11 Il~~p~p~~GH~~P~l~La~~La~r-Gh~VT~it~~ 45 (192)
|+++. ..+..+.=+..|.++|.++ |+++.++.+.
T Consensus 2 i~~~~-gtr~~~~~~~pl~~~l~~~~~~~~~~~~tg 36 (363)
T cd03786 2 ILVVT-GTRPEYIKLAPLIRALKKDPGFELVLVVTG 36 (363)
T ss_pred EEEEE-ecCHHHHHHHHHHHHHhcCCCCCEEEEEeC
Confidence 44444 3456666677888889887 9999976664
No 81
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=75.22 E-value=6.7 Score=32.93 Aligned_cols=41 Identities=10% Similarity=0.195 Sum_probs=35.6
Q ss_pred ceEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEcCCchhh
Q 029508 9 AHAVCVPYPAQGHVSPMMQVAKLLHSKGFHITFVNTEFNHR 49 (192)
Q Consensus 9 ~~Il~~p~p~~GH~~P~l~La~~La~rGh~VT~it~~~~~~ 49 (192)
..|.+.-.||.|--.-.-.|.++|.++||+|.++..++...
T Consensus 52 ~viGITG~PGaGKSTli~~L~~~l~~~G~rVaVlAVDPSSp 92 (323)
T COG1703 52 HVIGITGVPGAGKSTLIEALGRELRERGHRVAVLAVDPSSP 92 (323)
T ss_pred cEEEecCCCCCchHHHHHHHHHHHHHCCcEEEEEEECCCCC
Confidence 35668888999999999999999999999999998776554
No 82
>cd03795 GT1_like_4 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP-linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=75.07 E-value=5.3 Score=32.70 Aligned_cols=31 Identities=13% Similarity=0.191 Sum_probs=26.4
Q ss_pred CccChHHHHHHHHHHHhCCCeEEEEcCCchh
Q 029508 18 AQGHVSPMMQVAKLLHSKGFHITFVNTEFNH 48 (192)
Q Consensus 18 ~~GH~~P~l~La~~La~rGh~VT~it~~~~~ 48 (192)
..|.-.-..++++.|.++||+|++++.....
T Consensus 13 ~gG~~~~~~~l~~~L~~~g~~v~v~~~~~~~ 43 (357)
T cd03795 13 RGGIEQVIRDLAEGLAARGIEVAVLCASPEP 43 (357)
T ss_pred CCcHHHHHHHHHHHHHhCCCceEEEecCCCC
Confidence 4478888899999999999999999886543
No 83
>cd03801 GT1_YqgM_like This family is most closely related to the GT1 family of glycosyltransferases and named after YqgM in Bacillus licheniformis about which little is known. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold.
Probab=74.05 E-value=6.1 Score=31.63 Aligned_cols=30 Identities=17% Similarity=0.325 Sum_probs=26.7
Q ss_pred ccChHHHHHHHHHHHhCCCeEEEEcCCchh
Q 029508 19 QGHVSPMMQVAKLLHSKGFHITFVNTEFNH 48 (192)
Q Consensus 19 ~GH~~P~l~La~~La~rGh~VT~it~~~~~ 48 (192)
.|+-.-+..+++.|.+.||+|++++.....
T Consensus 14 ~G~~~~~~~l~~~L~~~g~~v~i~~~~~~~ 43 (374)
T cd03801 14 GGAERHVLELARALAARGHEVTVLTPGDGG 43 (374)
T ss_pred CcHhHHHHHHHHHHHhcCceEEEEecCCCC
Confidence 588899999999999999999999887544
No 84
>cd03806 GT1_ALG11_like This family is most closely related to the GT1 family of glycosyltransferases. ALG11 in yeast is involved in adding the final 1,2-linked Man to the Man5GlcNAc2-PP-Dol synthesized on the cytosolic face of the ER. The deletion analysis of ALG11 was shown to block the early steps of core biosynthesis that takes place on the cytoplasmic face of the ER and lead to a defect in the assembly of lipid-linked oligosaccharides.
Probab=73.86 E-value=43 Score=28.98 Aligned_cols=33 Identities=6% Similarity=-0.147 Sum_probs=24.2
Q ss_pred CCeEEEEeCCCcchHHHHHHH-hCCceEEecCCc
Q 029508 117 PPVTCVVSDGIMGFGRKAAQM-LGILDIQFWTAS 149 (192)
Q Consensus 117 ~~~d~vI~D~~~~~~~~vA~~-lgIP~i~~~t~~ 149 (192)
.+||++|.+..++.+..+++. .++|.+.+.-.+
T Consensus 106 ~~pDv~i~~~g~~~~~~~~~~~~~~~~i~y~h~P 139 (419)
T cd03806 106 LVPDIFIDTMGYPFTYPLVRLLGGCPVGAYVHYP 139 (419)
T ss_pred cCCCEEEEcCCcccHHHHHHHhcCCeEEEEecCC
Confidence 369999988877777667665 478988766655
No 85
>cd04955 GT1_like_6 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=73.55 E-value=5.4 Score=32.76 Aligned_cols=28 Identities=18% Similarity=0.184 Sum_probs=22.9
Q ss_pred cChHHHHHHHHHHHhCCCeEEEEcCCch
Q 029508 20 GHVSPMMQVAKLLHSKGFHITFVNTEFN 47 (192)
Q Consensus 20 GH~~P~l~La~~La~rGh~VT~it~~~~ 47 (192)
|=-.-..+|+++|.++||+|++++....
T Consensus 16 G~~~~~~~la~~L~~~g~~v~v~~~~~~ 43 (363)
T cd04955 16 GFETFVEELAPRLVARGHEVTVYCRSPY 43 (363)
T ss_pred cHHHHHHHHHHHHHhcCCCEEEEEccCC
Confidence 3345678999999999999999987643
No 86
>smart00851 MGS MGS-like domain. This domain composes the whole protein of methylglyoxal synthetase and the domain is also found in Carbamoyl phosphate synthetase (CPS) where it forms a regulatory domain that binds to the allosteric effector ornithine. This family also includes inosicase. The known structures in this family show a common phosphate binding site PUBMED:10526357.
Probab=72.96 E-value=25 Score=23.39 Aligned_cols=25 Identities=32% Similarity=0.430 Sum_probs=18.5
Q ss_pred HHHHHHHHHhCCCeEEEEcCCchhhhh
Q 029508 25 MMQVAKLLHSKGFHITFVNTEFNHRRL 51 (192)
Q Consensus 25 ~l~La~~La~rGh~VT~it~~~~~~~~ 51 (192)
++++++.|++.|++| +.|....+.+
T Consensus 2 ~~~~~~~l~~lG~~i--~AT~gTa~~L 26 (90)
T smart00851 2 LVELAKRLAELGFEL--VATGGTAKFL 26 (90)
T ss_pred HHHHHHHHHHCCCEE--EEccHHHHHH
Confidence 468999999999888 4555555545
No 87
>cd02070 corrinoid_protein_B12-BD B12 binding domain of corrinoid proteins. A family of small methanogenic corrinoid proteins that bind methyl-Co(III) 5-hydroxybenzimidazolylcobamide as a cofactor. They play a role on the methanogenesis from trimethylamine, dimethylamine or monomethylamine, which is initiated by a series of corrinoid-dependent methyltransferases.
Probab=72.62 E-value=10 Score=29.46 Aligned_cols=44 Identities=18% Similarity=0.198 Sum_probs=37.3
Q ss_pred CceEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEcCCchhhhh
Q 029508 8 KAHAVCVPYPAQGHVSPMMQVAKLLHSKGFHITFVNTEFNHRRL 51 (192)
Q Consensus 8 ~~~Il~~p~p~~GH~~P~l~La~~La~rGh~VT~it~~~~~~~~ 51 (192)
+.++++.+.++-.|-....=++..|.++|++|+++......+.+
T Consensus 82 ~~~vl~~~~~gd~H~lG~~~v~~~l~~~G~~vi~lG~~~p~~~l 125 (201)
T cd02070 82 KGKVVIGTVEGDIHDIGKNLVATMLEANGFEVIDLGRDVPPEEF 125 (201)
T ss_pred CCeEEEEecCCccchHHHHHHHHHHHHCCCEEEECCCCCCHHHH
Confidence 57999999999999999999999999999999988766544444
No 88
>PLN02846 digalactosyldiacylglycerol synthase
Probab=72.28 E-value=6.4 Score=34.98 Aligned_cols=39 Identities=23% Similarity=0.210 Sum_probs=30.4
Q ss_pred CceEEEEcC---CCc-cChHHHHHHHHHHHhCC-CeEEEEcCCc
Q 029508 8 KAHAVCVPY---PAQ-GHVSPMMQVAKLLHSKG-FHITFVNTEF 46 (192)
Q Consensus 8 ~~~Il~~p~---p~~-GH~~P~l~La~~La~rG-h~VT~it~~~ 46 (192)
+.||++++- |.. |=..-.+.++..|+++| |+|+++.+..
T Consensus 4 ~mrIaivTdt~lP~vnGva~s~~~~a~~L~~~G~heV~vvaP~~ 47 (462)
T PLN02846 4 KQHIAIFTTASLPWMTGTAVNPLFRAAYLAKDGDREVTLVIPWL 47 (462)
T ss_pred CCEEEEEEcCCCCCCCCeeccHHHHHHHHHhcCCcEEEEEecCC
Confidence 678988875 444 55466777888999999 8999998854
No 89
>TIGR03492 conserved hypothetical protein. This protein family is restricted to the Cyanobacteria, in one or two copies, save for instances in the genus Deinococcus. This protein shows some sequence similarity, especially toward the C-terminus, to lipid-A-disaccharide synthase (TIGR00215 or pfam02684). The function is unknown.
Probab=71.84 E-value=36 Score=29.40 Aligned_cols=25 Identities=16% Similarity=0.162 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHh--CCCeEE---EEcCCch
Q 029508 23 SPMMQVAKLLHS--KGFHIT---FVNTEFN 47 (192)
Q Consensus 23 ~P~l~La~~La~--rGh~VT---~it~~~~ 47 (192)
.-.+.++++|.+ +|++|. ++.+..-
T Consensus 11 ~~a~ai~~~l~~~~~~~~v~~~p~vG~~~~ 40 (396)
T TIGR03492 11 LIAARIAKALLQLSPDLNLEALPLVGEGRA 40 (396)
T ss_pred HHHHHHHHHHHhhCCCCCeEEeCcccCCHH
Confidence 557889999998 699999 8877653
No 90
>PF02441 Flavoprotein: Flavoprotein; InterPro: IPR003382 This entry contains a diverse range of flavoprotein enzymes, including epidermin biosynthesis protein, EpiD, which has been shown to be a flavoprotein that binds FMN []. This enzyme catalyzes the removal of two reducing equivalents from the cysteine residue of the C-terminal meso-lanthionine of epidermin to form a --C==C-- double bond. This family also includes the B chain of dipicolinate synthase a small polar molecule that accumulates to high concentrations in bacterial endospores, and is thought to play a role in spore heat resistance, or the maintenance of heat resistance []. Dipicolinate synthase catalyses the formation of dipicolinic acid from dihydroxydipicolinic acid. This family also includes phenylacrylic acid decarboxylase 4.1.1 from EC [].; GO: 0003824 catalytic activity; PDB: 3QJG_L 1G63_G 1G5Q_L 1P3Y_1 1QZU_A 1E20_A 1MVN_A 1MVL_A 3ZQU_A 2EJB_A ....
Probab=71.82 E-value=6.7 Score=28.17 Aligned_cols=41 Identities=10% Similarity=0.066 Sum_probs=30.1
Q ss_pred eEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEcCCchhhhh
Q 029508 10 HAVCVPYPAQGHVSPMMQVAKLLHSKGFHITFVNTEFNHRRL 51 (192)
Q Consensus 10 ~Il~~p~p~~GH~~P~l~La~~La~rGh~VT~it~~~~~~~~ 51 (192)
||++.-..+.+=+. ..++.++|.++|++|.++.++...+.+
T Consensus 2 ~i~l~vtGs~~~~~-~~~~l~~L~~~g~~v~vv~S~~A~~~~ 42 (129)
T PF02441_consen 2 RILLGVTGSIAAYK-APDLLRRLKRAGWEVRVVLSPSAERFV 42 (129)
T ss_dssp EEEEEE-SSGGGGG-HHHHHHHHHTTTSEEEEEESHHHHHHS
T ss_pred EEEEEEECHHHHHH-HHHHHHHHhhCCCEEEEEECCcHHHHh
Confidence 56655544444333 999999999999999999998766544
No 91
>PF02310 B12-binding: B12 binding domain; InterPro: IPR006158 The cobalamin (vitamin B12) binding domain can bind two different forms of the cobalamin cofactor, with cobalt bonded either to a methyl group (methylcobalamin) or to 5'-deoxyadenosine (adenosylcobalamin). Cobalamin-binding domains are mainly found in two families of enzymes present in animals and prokaryotes, which perform distinct kinds of reactions at the cobalt-carbon bond. Enzymes that require methylcobalamin carry out methyl transfer reactions. Enzymes that require adenosylcobalamin catalyse reactions in which the first step is the cleavage of adenosylcobalamin to form cob(II)alamin and the 5'-deoxyadenosyl radical, and thus act as radical generators. In both types of enzymes the B12-binding domain uses a histidine to bind the cobalt atom of cobalamin cofactors. This histidine is embedded in a DXHXXG sequence, the most conserved primary sequence motif of the domain [, , ]. Proteins containing the cobalamin-binding domain include: Animal and prokaryotic methionine synthase (2.1.1.13 from EC), which catalyse the transfer of a methyl group from methyl-cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Animal and prokaryotic methylmalonyl-CoA mutase (5.4.99.2 from EC), which are involved in the degradation of several amino acids, odd-chain fatty acids and cholesterol via propionyl-CoA to the tricarboxylic acid cycle. Prokaryotic lysine 5,6-aminomutase (5.4.3.4 from EC). Prokaryotic glutamate mutase (5.4.99.1 from EC) []. Prokaryotic methyleneglutarate mutase (5.4.99.4 from EC). Prokaryotic isobutyryl-CoA mutase (5.4.99.13 from EC). The core structure of the cobalamin-binding domain is characterised by a five-stranded alpha/beta (Rossmann) fold, which consists of 5 parallel beta-sheets surrounded by 4-5 alpha helices in three layers (alpha/beta/alpha) []. Upon binding cobalamin, important elements of the binding site appear to become structured, including an alpha-helix that forms on one side of the cleft accommodating the nucleotide 'tail' of the cofactor. In cobalamin, the cobalt atom can be either free (dmb-off) or bound to dimethylbenzimidazole (dmb-on) according to the pH. When bound to the cobalamin-binding domain, the dimethylbenzimidazole ligand is replaced by the active histidine (His-on) of the DXHXXG motif. The replacement of dimethylbenzimidazole by histidine allows switching between the catalytic and activation cycles []. In methionine synthase the cobalamin cofactor is sandwiched between the cobalamin-binding domain and an approximately 90 residues N-terminal domain forming a helical bundle comprising two pairs of antiparallel helices []. In methionine synthase, there is a second, adjacent domain involved in cobalamin binding that forms a 4-helical bundle cap (IPR003759 from INTERPRO); in the conversion to the active conformation of this enzyme, the 4-helical cap rotates to allow the cobalamin cofactor to bind the activation domain (IPR004223 from INTERPRO) [].; GO: 0031419 cobalamin binding, 0046872 metal ion binding; PDB: 1Y80_A 3BUL_A 1K7Y_A 1BMT_A 3IV9_A 1K98_A 3IVA_A 3KP1_A 3KOW_A 3KOZ_A ....
Probab=71.75 E-value=9.9 Score=26.44 Aligned_cols=37 Identities=16% Similarity=0.309 Sum_probs=32.9
Q ss_pred eEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEcCCc
Q 029508 10 HAVCVPYPAQGHVSPMMQVAKLLHSKGFHITFVNTEF 46 (192)
Q Consensus 10 ~Il~~p~p~~GH~~P~l~La~~La~rGh~VT~it~~~ 46 (192)
|+++...+..-|-.-+.-++..|.++||+|.++-...
T Consensus 2 ~v~~~~~~~~~~~lGl~~la~~l~~~G~~v~~~d~~~ 38 (121)
T PF02310_consen 2 RVVLACVPGEVHPLGLLYLAAYLRKAGHEVDILDANV 38 (121)
T ss_dssp EEEEEEBTTSSTSHHHHHHHHHHHHTTBEEEEEESSB
T ss_pred EEEEEeeCCcchhHHHHHHHHHHHHCCCeEEEECCCC
Confidence 6788888999999999999999999999999986554
No 92
>TIGR02370 pyl_corrinoid methyltransferase cognate corrinoid proteins, Methanosarcina family. This model describes a subfamily of the B12 binding domain (pfam02607, pfam02310) proteins. Members of the seed alignment include corrinoid proteins specific to four different, mutally non-homologous enzymes of the genus Methanosarcina. Three of the four cognate enzymes (trimethylamine, dimethylamine, and monomethylamine methyltransferases) all have the unusual, ribosomally incorporated amino acid pyrrolysine at the active site. All act in systems in which a methyl group is transferred to the corrinoid protein to create methylcobalamin, from which the methyl group is later transferred elsewhere.
Probab=70.19 E-value=13 Score=28.98 Aligned_cols=45 Identities=16% Similarity=0.220 Sum_probs=38.9
Q ss_pred CceEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEcCCchhhhhh
Q 029508 8 KAHAVCVPYPAQGHVSPMMQVAKLLHSKGFHITFVNTEFNHRRLI 52 (192)
Q Consensus 8 ~~~Il~~p~p~~GH~~P~l~La~~La~rGh~VT~it~~~~~~~~~ 52 (192)
+.+|++.+.++-.|-....=++..|.++|++|+++...-..+.+.
T Consensus 84 ~~~vv~~t~~gd~H~lG~~~v~~~l~~~G~~vi~LG~~vp~e~~v 128 (197)
T TIGR02370 84 LGKVVCGVAEGDVHDIGKNIVVTMLRANGFDVIDLGRDVPIDTVV 128 (197)
T ss_pred CCeEEEEeCCCchhHHHHHHHHHHHHhCCcEEEECCCCCCHHHHH
Confidence 579999999999999999999999999999999998776655543
No 93
>cd03820 GT1_amsD_like This family is most closely related to the GT1 family of glycosyltransferases. AmSD in Erwinia amylovora has been shown to be involved in the biosynthesis of amylovoran, the acidic exopolysaccharide acting as a virulence factor. This enzyme may be responsible for the formation of galactose alpha-1,6 linkages in amylovoran.
Probab=69.94 E-value=9.1 Score=30.54 Aligned_cols=30 Identities=20% Similarity=0.333 Sum_probs=25.0
Q ss_pred ccChHHHHHHHHHHHhCCCeEEEEcCCchh
Q 029508 19 QGHVSPMMQVAKLLHSKGFHITFVNTEFNH 48 (192)
Q Consensus 19 ~GH~~P~l~La~~La~rGh~VT~it~~~~~ 48 (192)
.|.-.-+..+++.|+++||+|++++.....
T Consensus 13 gG~~~~~~~l~~~L~~~g~~v~v~~~~~~~ 42 (348)
T cd03820 13 GGAERVLSNLANALAEKGHEVTIISLDKGE 42 (348)
T ss_pred CChHHHHHHHHHHHHhCCCeEEEEecCCCC
Confidence 456677889999999999999999876543
No 94
>cd02071 MM_CoA_mut_B12_BD methylmalonyl CoA mutase B12 binding domain. This domain binds to B12 (adenosylcobamide), which initiates the conversion of succinyl CoA and methylmalonyl CoA by forming an adenosyl radical, which then undergoes a rearrangement exchanging a hydrogen atom with a group attached to a neighboring carbon atom. This family is present in both mammals and bacteria. Bacterial members are heterodimers and involved in the fermentation of pyruvate to propionate. Mammalian members are homodimers and responsible for the conversion of odd-chain fatty acids and branched-chain amino acids via propionyl CoA to succinyl CoA for further degradation.
Probab=68.00 E-value=14 Score=26.27 Aligned_cols=42 Identities=14% Similarity=0.268 Sum_probs=35.6
Q ss_pred eEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEcCCchhhhh
Q 029508 10 HAVCVPYPAQGHVSPMMQVAKLLHSKGFHITFVNTEFNHRRL 51 (192)
Q Consensus 10 ~Il~~p~p~~GH~~P~l~La~~La~rGh~VT~it~~~~~~~~ 51 (192)
|+++.+.++-.|-.-..-++..|..+|++|.++......+.+
T Consensus 1 ~vv~~~~~gd~H~lG~~~~~~~l~~~G~~vi~lG~~vp~e~~ 42 (122)
T cd02071 1 RILVAKPGLDGHDRGAKVIARALRDAGFEVIYTGLRQTPEEI 42 (122)
T ss_pred CEEEEecCCChhHHHHHHHHHHHHHCCCEEEECCCCCCHHHH
Confidence 578899999999999988899999999999999886554444
No 95
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=67.53 E-value=10 Score=30.82 Aligned_cols=47 Identities=15% Similarity=0.212 Sum_probs=38.4
Q ss_pred CceEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEcCCchhhhhhhc
Q 029508 8 KAHAVCVPYPAQGHVSPMMQVAKLLHSKGFHITFVNTEFNHRRLIRS 54 (192)
Q Consensus 8 ~~~Il~~p~p~~GH~~P~l~La~~La~rGh~VT~it~~~~~~~~~~~ 54 (192)
...++++..||.|=-.-...++.+|..+|+.|+|++.+.....+..+
T Consensus 105 ~~nl~l~G~~G~GKThLa~Ai~~~l~~~g~sv~f~~~~el~~~Lk~~ 151 (254)
T COG1484 105 GENLVLLGPPGVGKTHLAIAIGNELLKAGISVLFITAPDLLSKLKAA 151 (254)
T ss_pred CCcEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHHHHH
Confidence 44788999998875556889999999889999999998877766443
No 96
>cd03791 GT1_Glycogen_synthase_DULL1_like This family is most closely related to the GT1 family of glycosyltransferases. Glycogen synthase catalyzes the formation and elongation of the alpha-1,4-glucose backbone using ADP-glucose, the second and key step of glycogen biosynthesis. This family includes starch synthases of plants, such as DULL1 in Zea mays and glycogen synthases of various organisms.
Probab=67.10 E-value=5.6 Score=34.73 Aligned_cols=23 Identities=13% Similarity=0.205 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHhCCCeEEEEcCC
Q 029508 23 SPMMQVAKLLHSKGFHITFVNTE 45 (192)
Q Consensus 23 ~P~l~La~~La~rGh~VT~it~~ 45 (192)
.-.-.|+++|+++||+|+++++.
T Consensus 20 ~~~~~L~~aL~~~G~~V~Vi~p~ 42 (476)
T cd03791 20 DVVGALPKALAKLGHDVRVIMPK 42 (476)
T ss_pred HHHHHHHHHHHHCCCeEEEEecC
Confidence 45678999999999999999964
No 97
>PF04244 DPRP: Deoxyribodipyrimidine photo-lyase-related protein; InterPro: IPR007357 This family appears to be related to DNA photolyases.; PDB: 3ZXS_A.
Probab=67.09 E-value=6.2 Score=31.54 Aligned_cols=26 Identities=27% Similarity=0.493 Sum_probs=20.4
Q ss_pred ChHHHHHHHHHHHhCCCeEEEEcCCc
Q 029508 21 HVSPMMQVAKLLHSKGFHITFVNTEF 46 (192)
Q Consensus 21 H~~P~l~La~~La~rGh~VT~it~~~ 46 (192)
|+..|.+.+..|.++|++|+++....
T Consensus 47 ~~saMRhfa~~L~~~G~~V~Y~~~~~ 72 (224)
T PF04244_consen 47 FFSAMRHFADELRAKGFRVHYIELDD 72 (224)
T ss_dssp HHHHHHHHHHHHHHTT--EEEE-TT-
T ss_pred HHHHHHHHHHHHHhCCCEEEEEeCCC
Confidence 56889999999999999999998873
No 98
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=66.55 E-value=86 Score=29.49 Aligned_cols=40 Identities=18% Similarity=0.213 Sum_probs=32.1
Q ss_pred CceEEEEcC--CCccChHHHHHHHHHHHhCCCeEEEEcCCch
Q 029508 8 KAHAVCVPY--PAQGHVSPMMQVAKLLHSKGFHITFVNTEFN 47 (192)
Q Consensus 8 ~~~Il~~p~--p~~GH~~P~l~La~~La~rGh~VT~it~~~~ 47 (192)
..+++.++. +|.|--.-...||..|+..|.+|-++-.+..
T Consensus 545 ~~kvi~vts~~~G~GKTt~a~nLA~~lA~~g~rvLlID~D~~ 586 (754)
T TIGR01005 545 EPEVVETQRPRPVLGKSDIEANAAALIASGGKRALLIDADGR 586 (754)
T ss_pred CceEEEeecCCCCCChhHHHHHHHHHHHhCCCeEEEEeCCCC
Confidence 446665555 6678889999999999999999999877644
No 99
>PF08323 Glyco_transf_5: Starch synthase catalytic domain; InterPro: IPR013534 This region represents the catalytic domain of glycogen (or starch) synthases that use ADP-glucose (2.4.1.21 from EC), rather than UDP-glucose (2.4.1.11 from EC) as in animals, as the glucose donor. This enzyme is found in bacteria and plants. Whether the name given is glycogen synthase or starch synthase depends on context, and therefore on substrate.; PDB: 2BIS_C 3L01_A 3FRO_A 2R4U_A 2R4T_A 3D1J_A 3COP_A 3GUH_A 2QZS_A 3CX4_A ....
Probab=65.34 E-value=5.2 Score=32.16 Aligned_cols=26 Identities=12% Similarity=0.231 Sum_probs=20.5
Q ss_pred ChHHHHHHHHHHHhCCCeEEEEcCCc
Q 029508 21 HVSPMMQVAKLLHSKGFHITFVNTEF 46 (192)
Q Consensus 21 H~~P~l~La~~La~rGh~VT~it~~~ 46 (192)
=-.-.-.|+++|+++||+|+++++.-
T Consensus 18 Lgdv~~~L~kaL~~~G~~V~Vi~P~y 43 (245)
T PF08323_consen 18 LGDVVGSLPKALAKQGHDVRVIMPKY 43 (245)
T ss_dssp HHHHHHHHHHHHHHTT-EEEEEEE-T
T ss_pred HhHHHHHHHHHHHhcCCeEEEEEccc
Confidence 34567889999999999999999864
No 100
>PRK10916 ADP-heptose:LPS heptosyltransferase II; Provisional
Probab=65.16 E-value=82 Score=26.37 Aligned_cols=42 Identities=10% Similarity=0.086 Sum_probs=37.0
Q ss_pred eEEEEcCCCccChHHHHHHHHHHHhC--CCeEEEEcCCchhhhh
Q 029508 10 HAVCVPYPAQGHVSPMMQVAKLLHSK--GFHITFVNTEFNHRRL 51 (192)
Q Consensus 10 ~Il~~p~p~~GH~~P~l~La~~La~r--Gh~VT~it~~~~~~~~ 51 (192)
+|+++-.-+.|.+.-...+.+.|.++ +.+|++++.+.....+
T Consensus 2 rILii~~~~iGD~il~tP~l~~Lk~~~P~a~I~~l~~~~~~~l~ 45 (348)
T PRK10916 2 KILVIGPSWVGDMMMSQSLYRTLKARYPQAIIDVMAPAWCRPLL 45 (348)
T ss_pred cEEEEccCcccHHHhHHHHHHHHHHHCCCCeEEEEechhhHHHH
Confidence 68999989999999999999999985 8999999988776644
No 101
>TIGR02201 heptsyl_trn_III lipopolysaccharide heptosyltransferase III, putative. This family consists of examples of the putative ADP-heptose:LPS heptosyltransferase III, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria. This enzyme may be less widely distributed than heptosyltransferases I and II.
Probab=64.84 E-value=58 Score=27.14 Aligned_cols=105 Identities=11% Similarity=0.013 Sum_probs=65.2
Q ss_pred eEEEEcCCCccChHHHHHHHHHHHhC--CCeEEEEcCCchhhhhhhccCCCccCCCCCce-eEecCCCCCCCCCCCCCCH
Q 029508 10 HAVCVPYPAQGHVSPMMQVAKLLHSK--GFHITFVNTEFNHRRLIRSKGPEYVKGLPDFR-FETIPDGLPPSDRDATQDV 86 (192)
Q Consensus 10 ~Il~~p~p~~GH~~P~l~La~~La~r--Gh~VT~it~~~~~~~~~~~~~~~~~~~~~~i~-~~~l~~~~~~~~~~~~~~~ 86 (192)
||+++-.-+.|.+.-...+.+.|.++ +.+|++++...+...+. +.|.|+ +..++..-. ....
T Consensus 1 rILii~~~~iGD~vl~tp~l~~Lk~~~P~a~I~~l~~~~~~~l~~---------~~p~vd~vi~~~~~~~------~~~~ 65 (344)
T TIGR02201 1 RILLIKLRHHGDMLLTTPVISSLKKNYPDAKIDVLLYQETIPILS---------ENPDINALYGLDRKKA------KAGE 65 (344)
T ss_pred CEEEEEeccccceeeHHHHHHHHHHHCCCCEEEEEECcChHHHHh---------cCCCccEEEEeChhhh------cchH
Confidence 57888888899999999999999986 89999999988776442 234554 333331100 0000
Q ss_pred HHHHHHHHHhCcHHHHHHHHHhhcCCCCCCCCeEEEEeCCCcchHHHHHHHhCCceEE
Q 029508 87 PALSDSIRKNGLAPFLELLGKLNSSADDQVPPVTCVVSDGIMGFGRKAAQMLGILDIQ 144 (192)
Q Consensus 87 ~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~d~vI~D~~~~~~~~vA~~lgIP~i~ 144 (192)
.... ...++++++++ .++|++|.=....-...++...|+|.-+
T Consensus 66 ----~~~~-----~~~~l~~~lr~------~~yD~vidl~~~~~s~ll~~l~~a~~ri 108 (344)
T TIGR02201 66 ----RKLA-----NQFHLIKVLRA------NRYDLVVNLTDQWMVAILVKLLNARVKI 108 (344)
T ss_pred ----HHHH-----HHHHHHHHHHh------CCCCEEEECCcchHHHHHHHhcCCCeEE
Confidence 0010 11234555543 5899988532223356778888988744
No 102
>cd02069 methionine_synthase_B12_BD B12 binding domain of methionine synthase. This domain binds methylcobalamin, which it uses as an intermediate methyl carrier from methyltetrahydrofolate (CH3H4folate) to homocysteine (Hcy).
Probab=64.72 E-value=19 Score=28.48 Aligned_cols=45 Identities=13% Similarity=0.150 Sum_probs=38.9
Q ss_pred CCceEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEcCCchhhhh
Q 029508 7 RKAHAVCVPYPAQGHVSPMMQVAKLLHSKGFHITFVNTEFNHRRL 51 (192)
Q Consensus 7 ~~~~Il~~p~p~~GH~~P~l~La~~La~rGh~VT~it~~~~~~~~ 51 (192)
.+.+|++.+.++-.|-.-..=++..|.++|++|+++...-..+.+
T Consensus 87 ~~~~vvl~t~~gd~HdiG~~iv~~~l~~~G~~Vi~LG~~vp~e~~ 131 (213)
T cd02069 87 SKGKIVLATVKGDVHDIGKNLVGVILSNNGYEVIDLGVMVPIEKI 131 (213)
T ss_pred CCCeEEEEeCCCchhHHHHHHHHHHHHhCCCEEEECCCCCCHHHH
Confidence 467999999999999999999999999999999999876655544
No 103
>PF07894 DUF1669: Protein of unknown function (DUF1669); InterPro: IPR012461 This family is composed of sequences derived from hypothetical eukaryotic proteins of unknown function. Some members of this family are annotated as being potential phospholipases but no literature was found to support this.
Probab=63.59 E-value=15 Score=30.46 Aligned_cols=33 Identities=18% Similarity=0.098 Sum_probs=24.8
Q ss_pred CCeEEEEeCCCcch-----HHHHHHHhCCceEEecCCc
Q 029508 117 PPVTCVVSDGIMGF-----GRKAAQMLGILDIQFWTAS 149 (192)
Q Consensus 117 ~~~d~vI~D~~~~~-----~~~vA~~lgIP~i~~~t~~ 149 (192)
.++-+||.|.|..- ..+.|.+.+||++++.-..
T Consensus 147 ~kVIAIVMD~FTD~dIf~DLleAa~kR~VpVYiLLD~~ 184 (284)
T PF07894_consen 147 QKVIAIVMDVFTDVDIFCDLLEAANKRGVPVYILLDEQ 184 (284)
T ss_pred cceeEEEeeccccHHHHHHHHHHHHhcCCcEEEEechh
Confidence 47899999998732 2466778999999876533
No 104
>PF06506 PrpR_N: Propionate catabolism activator; InterPro: IPR010524 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. This entry represents a domain found at the N terminus of several sigma54- dependent transcriptional activators including PrpR, which activates catabolism of propionate. In Salmonella enterica subsp. enterica serovar Typhimurium, PrpR acts as a sensor of 2-methylcitrate (2-MC), an intermediate of the 2-methylcitric acid cycle used by this bacterium to convert propionate to pyruvate []. ; GO: 0000156 two-component response regulator activity, 0003677 DNA binding, 0005524 ATP binding, 0000160 two-component signal transduction system (phosphorelay); PDB: 2Q5C_A 2PJU_A.
Probab=62.37 E-value=34 Score=25.87 Aligned_cols=117 Identities=11% Similarity=0.131 Sum_probs=60.2
Q ss_pred cChHHHHHHHHHH-HhCCCeEEEEcCCchhhhhhhccCCCccCCCCCceeEecCC---C-------CCC-C------CCC
Q 029508 20 GHVSPMMQVAKLL-HSKGFHITFVNTEFNHRRLIRSKGPEYVKGLPDFRFETIPD---G-------LPP-S------DRD 81 (192)
Q Consensus 20 GH~~P~l~La~~L-a~rGh~VT~it~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~---~-------~~~-~------~~~ 81 (192)
+.+.=.++.++++ .+.|.+|-+.-+.. ...+.+. -++.++.++- + ... + ...
T Consensus 17 ~~~e~~v~~a~~~~~~~g~dViIsRG~t-a~~lr~~---------~~iPVV~I~~s~~Dil~al~~a~~~~~~Iavv~~~ 86 (176)
T PF06506_consen 17 ASLEEAVEEARQLLESEGADVIISRGGT-AELLRKH---------VSIPVVEIPISGFDILRALAKAKKYGPKIAVVGYP 86 (176)
T ss_dssp --HHHHHHHHHHHHTTTT-SEEEEEHHH-HHHHHCC----------SS-EEEE---HHHHHHHHHHCCCCTSEEEEEEES
T ss_pred ecHHHHHHHHHHhhHhcCCeEEEECCHH-HHHHHHh---------CCCCEEEECCCHhHHHHHHHHHHhcCCcEEEEecc
Confidence 5566778899999 78899988776553 3334221 1344444431 0 000 0 000
Q ss_pred C-CCCHHHHHHHHHH-------hCcHHHHHHHHHhhcCCCCCCCCeEEEEeCCCcchHHHHHHHhCCceEEecCCchHHH
Q 029508 82 A-TQDVPALSDSIRK-------NGLAPFLELLGKLNSSADDQVPPVTCVVSDGIMGFGRKAAQMLGILDIQFWTASACGM 153 (192)
Q Consensus 82 ~-~~~~~~~~~~~~~-------~~~~~~~~ll~~l~~~~~~~~~~~d~vI~D~~~~~~~~vA~~lgIP~i~~~t~~a~~~ 153 (192)
. ..+...+-..+.. ...+.++..++++.. .++|+||-+.. +..+|+++|+|++.+.++--+..
T Consensus 87 ~~~~~~~~~~~ll~~~i~~~~~~~~~e~~~~i~~~~~------~G~~viVGg~~---~~~~A~~~gl~~v~i~sg~esi~ 157 (176)
T PF06506_consen 87 NIIPGLESIEELLGVDIKIYPYDSEEEIEAAIKQAKA------EGVDVIVGGGV---VCRLARKLGLPGVLIESGEESIR 157 (176)
T ss_dssp S-SCCHHHHHHHHT-EEEEEEESSHHHHHHHHHHHHH------TT--EEEESHH---HHHHHHHTTSEEEESS--HHHHH
T ss_pred cccHHHHHHHHHhCCceEEEEECCHHHHHHHHHHHHH------cCCcEEECCHH---HHHHHHHcCCcEEEEEecHHHHH
Confidence 0 1223322222210 013456777777765 47999999873 57999999999999888554433
Q ss_pred HH
Q 029508 154 MG 155 (192)
Q Consensus 154 ~~ 155 (192)
..
T Consensus 158 ~A 159 (176)
T PF06506_consen 158 RA 159 (176)
T ss_dssp HH
T ss_pred HH
Confidence 33
No 105
>PF04127 DFP: DNA / pantothenate metabolism flavoprotein; InterPro: IPR007085 This entry represents the C-terminal domain found in DNA/pantothenate metabolism flavoproteins, which affects synthesis of DNA and pantothenate metabolism. These proteins contain ATP, phosphopantothenate, and cysteine binding sites. The structure of this domain has been determined in human phosphopantothenoylcysteine (PPC) synthetase [] and as the PPC synthase domain (CoaB) from the Escherichia coli coenzyme A bifunctional protein CoaBC []. This domain adopts a 3-layer alpha/beta/alpha fold with mixed beta-sheets, which topologically resembles a combination of Rossmann-like and ribokinase-like folds. The structure of these proteins predicts a ping pong mechanism with initial formation of an acyladenylate intermediate, followed by release of pyrophosphate and attack by cysteine to form the final products PPC and AMP. ; PDB: 1U7W_A 1U7U_A 1U80_C 1U7Z_A 1P9O_B 2GK4_A.
Probab=62.29 E-value=8.8 Score=29.70 Aligned_cols=22 Identities=14% Similarity=0.167 Sum_probs=17.6
Q ss_pred HHHHHHHHHhCCCeEEEEcCCc
Q 029508 25 MMQVAKLLHSKGFHITFVNTEF 46 (192)
Q Consensus 25 ~l~La~~La~rGh~VT~it~~~ 46 (192)
-..||+++..||++||++..+.
T Consensus 32 G~~lA~~~~~~Ga~V~li~g~~ 53 (185)
T PF04127_consen 32 GAALAEEAARRGAEVTLIHGPS 53 (185)
T ss_dssp HHHHHHHHHHTT-EEEEEE-TT
T ss_pred HHHHHHHHHHCCCEEEEEecCc
Confidence 4678999999999999999874
No 106
>cd01423 MGS_CPS_I_III Methylglyoxal synthase-like domain found in pyr1 and URA1-like carbamoyl phosphate synthetases (CPS), including ammonia-dependent CPS Type I, and glutamine-dependent CPS Type III. These are multidomain proteins, in which MGS is the C-terminal domain.
Probab=61.28 E-value=53 Score=22.87 Aligned_cols=27 Identities=22% Similarity=0.294 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHhCCCeEEEEcCCchhhhh
Q 029508 23 SPMMQVAKLLHSKGFHITFVNTEFNHRRL 51 (192)
Q Consensus 23 ~P~l~La~~La~rGh~VT~it~~~~~~~~ 51 (192)
.=+.++++.|.+.|++| +.+....+.+
T Consensus 13 ~~~~~~a~~l~~~G~~i--~aT~gTa~~L 39 (116)
T cd01423 13 PELLPTAQKLSKLGYKL--YATEGTADFL 39 (116)
T ss_pred hhHHHHHHHHHHCCCEE--EEccHHHHHH
Confidence 34789999999999877 4566666655
No 107
>PF02951 GSH-S_N: Prokaryotic glutathione synthetase, N-terminal domain; InterPro: IPR004215 Prokaryotic glutathione synthetase 6.3.2.3 from EC (glutathione synthase) catalyses the conversion of gamma-L-glutamyl-L-cysteine and glycine to orthophosphate and glutathione in the presence of ATP. This is the second step in glutathione biosynthesis. The enzyme is inhibited by 7,8-dihydrofolate, methotrexate and trimethoprim. This domain is the N terminus of the enzyme.; GO: 0004363 glutathione synthase activity, 0006750 glutathione biosynthetic process; PDB: 1GLV_A 1GSA_A 1GSH_A 2GLT_A.
Probab=60.72 E-value=19 Score=25.86 Aligned_cols=38 Identities=8% Similarity=0.063 Sum_probs=25.0
Q ss_pred eEEEEcCCCcc---ChHHHHHHHHHHHhCCCeEEEEcCCch
Q 029508 10 HAVCVPYPAQG---HVSPMMQVAKLLHSKGFHITFVNTEFN 47 (192)
Q Consensus 10 ~Il~~p~p~~G---H~~P~l~La~~La~rGh~VT~it~~~~ 47 (192)
+|+|+--|..+ .-.....|+++-.+|||+|.++.....
T Consensus 2 ki~fvmDpi~~i~~~kDTT~alm~eAq~RGhev~~~~~~dL 42 (119)
T PF02951_consen 2 KIAFVMDPIESIKPYKDTTFALMLEAQRRGHEVFYYEPGDL 42 (119)
T ss_dssp EEEEEES-GGG--TTT-HHHHHHHHHHHTT-EEEEE-GGGE
T ss_pred eEEEEeCCHHHCCCCCChHHHHHHHHHHCCCEEEEEEcCcE
Confidence 45655555443 235678899999999999999987654
No 108
>cd01018 ZntC Metal binding protein ZntC. These proteins are predicted to function as initial receptors in ABC transport of metal ions. They belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. They are comprised of two globular subdomains connected by a long alpha helix and bind their specific ligands in the cleft between these domains. In addition, many of these proteins possess a metal-binding histidine-rich motif (repetitive HDH sequence).
Probab=60.36 E-value=32 Score=27.90 Aligned_cols=51 Identities=12% Similarity=0.003 Sum_probs=36.1
Q ss_pred HHHHHHHHhhcCCCCCCCCeEEEEeCCCcc--hHHHHHHHhCCceEEecCCchHHHHHH
Q 029508 100 PFLELLGKLNSSADDQVPPVTCVVSDGIMG--FGRKAAQMLGILDIQFWTASACGMMGY 156 (192)
Q Consensus 100 ~~~~ll~~l~~~~~~~~~~~d~vI~D~~~~--~~~~vA~~lgIP~i~~~t~~a~~~~~~ 156 (192)
.+.++.+.+++ .++.||+.+.... .+..+|++.|++.+.+.+.+...+.++
T Consensus 205 ~l~~l~~~ik~------~~v~~if~e~~~~~~~~~~la~~~g~~v~~ld~~~~~y~~~m 257 (266)
T cd01018 205 DLKRLIDLAKE------KGVRVVFVQPQFSTKSAEAIAREIGAKVVTIDPLAADWEENL 257 (266)
T ss_pred HHHHHHHHHHH------cCCCEEEEcCCCCcHHHHHHHHHcCCeEEEeCCcHHHHHHHH
Confidence 45666666654 5789999998764 346899999999998887764433333
No 109
>TIGR02095 glgA glycogen/starch synthases, ADP-glucose type. This family consists of glycogen (or starch) synthases that use ADP-glucose (EC 2.4.1.21), rather than UDP-glucose (EC 2.4.1.11) as in animals, as the glucose donor. This enzyme is found in bacteria and plants. Whether the name given is glycogen synthase or starch synthase depends on context, and therefore on substrate.
Probab=60.13 E-value=9.1 Score=33.60 Aligned_cols=26 Identities=15% Similarity=0.213 Sum_probs=21.9
Q ss_pred cChHHHHHHHHHHHhCCCeEEEEcCC
Q 029508 20 GHVSPMMQVAKLLHSKGFHITFVNTE 45 (192)
Q Consensus 20 GH~~P~l~La~~La~rGh~VT~it~~ 45 (192)
|=-.-.-.|+++|+++||+|.++++.
T Consensus 18 Gl~~~v~~L~~aL~~~G~~v~v~~p~ 43 (473)
T TIGR02095 18 GLADVVGALPKALAALGHDVRVLLPA 43 (473)
T ss_pred cHHHHHHHHHHHHHHcCCeEEEEecC
Confidence 44456789999999999999999974
No 110
>PF09314 DUF1972: Domain of unknown function (DUF1972); InterPro: IPR015393 This domain is functionally uncharacterised and found in bacterial glycosyltransferases and rhamnosyltransferases.
Probab=59.99 E-value=14 Score=28.62 Aligned_cols=56 Identities=21% Similarity=0.166 Sum_probs=34.8
Q ss_pred ceEEEEcC---CCc-cCh-HHHHHHHHHHHhCCCeEEEEcCCchhhhhhhccCCCccCCCCCceeEecC
Q 029508 9 AHAVCVPY---PAQ-GHV-SPMMQVAKLLHSKGFHITFVNTEFNHRRLIRSKGPEYVKGLPDFRFETIP 72 (192)
Q Consensus 9 ~~Il~~p~---p~~-GH~-~P~l~La~~La~rGh~VT~it~~~~~~~~~~~~~~~~~~~~~~i~~~~l~ 72 (192)
.||.++.. |+. |=+ .-..+|+..|+++||+||+++......... ..+.+++...+|
T Consensus 2 kkIaIiGtrGIPa~YGGfET~ve~L~~~l~~~g~~v~Vyc~~~~~~~~~--------~~y~gv~l~~i~ 62 (185)
T PF09314_consen 2 KKIAIIGTRGIPARYGGFETFVEELAPRLVSKGIDVTVYCRSDYYPYKE--------FEYNGVRLVYIP 62 (185)
T ss_pred ceEEEEeCCCCCcccCcHHHHHHHHHHHHhcCCceEEEEEccCCCCCCC--------cccCCeEEEEeC
Confidence 45665544 332 333 556778888889999999998765442211 233567776665
No 111
>PF12146 Hydrolase_4: Putative lysophospholipase; InterPro: IPR022742 This domain is found in bacteria and eukaryotes and is approximately 110 amino acids in length. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins.
Probab=59.24 E-value=22 Score=23.25 Aligned_cols=34 Identities=15% Similarity=0.210 Sum_probs=27.3
Q ss_pred ceEEEEcCCCccChHHHHHHHHHHHhCCCeEEEE
Q 029508 9 AHAVCVPYPAQGHVSPMMQVAKLLHSKGFHITFV 42 (192)
Q Consensus 9 ~~Il~~p~p~~GH~~P~l~La~~La~rGh~VT~i 42 (192)
.-++++......|..=+.++|+.|+++|..|...
T Consensus 16 k~~v~i~HG~~eh~~ry~~~a~~L~~~G~~V~~~ 49 (79)
T PF12146_consen 16 KAVVVIVHGFGEHSGRYAHLAEFLAEQGYAVFAY 49 (79)
T ss_pred CEEEEEeCCcHHHHHHHHHHHHHHHhCCCEEEEE
Confidence 3455555566689999999999999999888755
No 112
>cd03799 GT1_amsK_like This is a family of GT1 glycosyltransferases found specifically in certain bacteria. amsK in Erwinia amylovora, has been reported to be involved in the biosynthesis of amylovoran, a exopolysaccharide acting as a virulence factor.
Probab=59.16 E-value=21 Score=29.09 Aligned_cols=26 Identities=8% Similarity=0.105 Sum_probs=21.8
Q ss_pred hHHHHHHHHHHHhCCCeEEEEcCCch
Q 029508 22 VSPMMQVAKLLHSKGFHITFVNTEFN 47 (192)
Q Consensus 22 ~~P~l~La~~La~rGh~VT~it~~~~ 47 (192)
-.-+..+++.|.++||+|++++....
T Consensus 14 ~~~~~~~~~~L~~~g~~v~v~~~~~~ 39 (355)
T cd03799 14 ETFILREILALEAAGHEVEIFSLRPP 39 (355)
T ss_pred hHHHHHHHHHHHhCCCeEEEEEecCc
Confidence 35688999999999999999986543
No 113
>COG1817 Uncharacterized protein conserved in archaea [Function unknown]
Probab=58.64 E-value=1.2e+02 Score=25.92 Aligned_cols=108 Identities=16% Similarity=0.158 Sum_probs=65.4
Q ss_pred cChHHHHHHHHHHHhCCCeEEEEcCCc-hhhhhhhccCCCccCCCCCceeEecCCCCCCCCCCCCCCHH-HHHHHHHHhC
Q 029508 20 GHVSPMMQVAKLLHSKGFHITFVNTEF-NHRRLIRSKGPEYVKGLPDFRFETIPDGLPPSDRDATQDVP-ALSDSIRKNG 97 (192)
Q Consensus 20 GH~~P~l~La~~La~rGh~VT~it~~~-~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~ 97 (192)
-|+--+-.+.+.|..+||+|-+.+-+. ....+.+. -++.+..+.. . ....+. .+.....+
T Consensus 11 ~hvhfFk~lI~elekkG~ev~iT~rd~~~v~~LLd~---------ygf~~~~Igk---~----g~~tl~~Kl~~~~eR-- 72 (346)
T COG1817 11 PHVHFFKNLIWELEKKGHEVLITCRDFGVVTELLDL---------YGFPYKSIGK---H----GGVTLKEKLLESAER-- 72 (346)
T ss_pred chhhHHHHHHHHHHhCCeEEEEEEeecCcHHHHHHH---------hCCCeEeecc---c----CCccHHHHHHHHHHH--
Confidence 466678999999999999998876543 22222222 1344544432 0 011222 22222221
Q ss_pred cHHHHHHHHHhhcCCCCCCCCeEEEEeCCCcchHHHHHHHhCCceEEecCCchHHHHH
Q 029508 98 LAPFLELLGKLNSSADDQVPPVTCVVSDGIMGFGRKAAQMLGILDIQFWTASACGMMG 155 (192)
Q Consensus 98 ~~~~~~ll~~l~~~~~~~~~~~d~vI~D~~~~~~~~vA~~lgIP~i~~~t~~a~~~~~ 155 (192)
.-.+.+++.+ .+||+.|. ...+.+.-+|--+|+|.+.|.-..-+-.+-
T Consensus 73 ~~~L~ki~~~---------~kpdv~i~-~~s~~l~rvafgLg~psIi~~D~ehA~~qn 120 (346)
T COG1817 73 VYKLSKIIAE---------FKPDVAIG-KHSPELPRVAFGLGIPSIIFVDNEHAEAQN 120 (346)
T ss_pred HHHHHHHHhh---------cCCceEee-cCCcchhhHHhhcCCceEEecCChhHHHHh
Confidence 1123334433 57999999 667888999999999999998877654443
No 114
>cd03812 GT1_CapH_like This family is most closely related to the GT1 family of glycosyltransferases. capH in Staphylococcus aureus has been shown to be required for the biosynthesis of the type 1 capsular polysaccharide (CP1).
Probab=58.11 E-value=11 Score=30.79 Aligned_cols=30 Identities=17% Similarity=0.177 Sum_probs=25.6
Q ss_pred CccChHHHHHHHHHHHhCCCeEEEEcCCch
Q 029508 18 AQGHVSPMMQVAKLLHSKGFHITFVNTEFN 47 (192)
Q Consensus 18 ~~GH~~P~l~La~~La~rGh~VT~it~~~~ 47 (192)
..|.-.-...++++|.++||+|++++....
T Consensus 11 ~GG~~~~~~~l~~~L~~~~~~v~~i~~~~~ 40 (358)
T cd03812 11 RGGIETFIMNYYRNLDRSKIQFDFLVTSKE 40 (358)
T ss_pred CccHHHHHHHHHHhcCccceEEEEEEeCCC
Confidence 447888899999999999999999987643
No 115
>TIGR02195 heptsyl_trn_II lipopolysaccharide heptosyltransferase II. This family consists of examples of ADP-heptose:LPS heptosyltransferase II, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria.
Probab=57.88 E-value=1.1e+02 Score=25.36 Aligned_cols=42 Identities=12% Similarity=0.132 Sum_probs=36.0
Q ss_pred eEEEEcCCCccChHHHHHHHHHHHhC--CCeEEEEcCCchhhhh
Q 029508 10 HAVCVPYPAQGHVSPMMQVAKLLHSK--GFHITFVNTEFNHRRL 51 (192)
Q Consensus 10 ~Il~~p~p~~GH~~P~l~La~~La~r--Gh~VT~it~~~~~~~~ 51 (192)
||+++-.-+-|.+.-...+.+.|.++ +.+|++++.+...+.+
T Consensus 1 rILii~~~~iGD~i~~~p~l~~Lk~~~P~a~I~~l~~~~~~~l~ 44 (334)
T TIGR02195 1 KILVIGPSWVGDMVMAQSLYRLLKKRYPQAVIDVLAPAWCRPLL 44 (334)
T ss_pred CEEEEccchhHHHHHHHHHHHHHHHHCCCCEEEEEechhhHHHH
Confidence 58888888899999999999999986 8999999987665544
No 116
>PRK07313 phosphopantothenoylcysteine decarboxylase; Validated
Probab=57.85 E-value=17 Score=27.97 Aligned_cols=42 Identities=10% Similarity=0.158 Sum_probs=30.5
Q ss_pred ceEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEcCCchhhhh
Q 029508 9 AHAVCVPYPAQGHVSPMMQVAKLLHSKGFHITFVNTEFNHRRL 51 (192)
Q Consensus 9 ~~Il~~p~p~~GH~~P~l~La~~La~rGh~VT~it~~~~~~~~ 51 (192)
.||++.-..+.|= .-..++.+.|.++|++|.++.++...+.+
T Consensus 2 k~Ill~vtGsiaa-~~~~~li~~L~~~g~~V~vv~T~~A~~fi 43 (182)
T PRK07313 2 KNILLAVSGSIAA-YKAADLTSQLTKRGYQVTVLMTKAATKFI 43 (182)
T ss_pred CEEEEEEeChHHH-HHHHHHHHHHHHCCCEEEEEEChhHHHHc
Confidence 3566555444443 44789999999999999999988765543
No 117
>TIGR00347 bioD dethiobiotin synthase. Dethiobiotin synthase is involved in biotin biosynthesis and catalyses the reaction (CO2 + 7,8-diaminononanoate + ATP = dethiobiotin + phosphate + ADP). The enzyme binds ATP (see motif in first 12 residues of the SEED alignment) and requires magnesium as a co-factor.
Probab=56.04 E-value=72 Score=23.42 Aligned_cols=27 Identities=15% Similarity=0.289 Sum_probs=23.4
Q ss_pred CCCccChHHHHHHHHHHHhCCCeEEEE
Q 029508 16 YPAQGHVSPMMQVAKLLHSKGFHITFV 42 (192)
Q Consensus 16 ~p~~GH~~P~l~La~~La~rGh~VT~i 42 (192)
-++.|--.-.+.|++.|+++|.+|-++
T Consensus 6 ~~~~GKT~va~~L~~~l~~~g~~V~~~ 32 (166)
T TIGR00347 6 DTGVGKTVASSALAAKLKKAGYSVGYY 32 (166)
T ss_pred CCCccHHHHHHHHHHHHHHCCCcEEEE
Confidence 356677888999999999999999886
No 118
>TIGR00708 cobA cob(I)alamin adenosyltransferase. Alternate name: corrinoid adenosyltransferase.
Probab=55.66 E-value=92 Score=23.86 Aligned_cols=35 Identities=9% Similarity=0.136 Sum_probs=31.1
Q ss_pred CceEEEEcCCCccChHHHHHHHHHHHhCCCeEEEE
Q 029508 8 KAHAVCVPYPAQGHVSPMMQVAKLLHSKGFHITFV 42 (192)
Q Consensus 8 ~~~Il~~p~p~~GH~~P~l~La~~La~rGh~VT~i 42 (192)
+.-|.++...|.|=-.-.+.+|-+.+.+|++|.++
T Consensus 5 ~Gli~v~~g~GkGKtt~a~g~a~ra~~~g~~v~iv 39 (173)
T TIGR00708 5 RGIIIVHTGNGKGKTTAAFGMALRALGHGKKVGVI 39 (173)
T ss_pred ccEEEEECCCCCChHHHHHHHHHHHHHCCCeEEEE
Confidence 45778999999999999999999999999999765
No 119
>COG2185 Sbm Methylmalonyl-CoA mutase, C-terminal domain/subunit (cobalamin-binding) [Lipid metabolism]
Probab=55.33 E-value=30 Score=25.71 Aligned_cols=46 Identities=13% Similarity=0.179 Sum_probs=37.9
Q ss_pred CCCceEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEcCCchhhhh
Q 029508 6 ARKAHAVCVPYPAQGHVSPMMQVAKLLHSKGFHITFVNTEFNHRRL 51 (192)
Q Consensus 6 ~~~~~Il~~p~p~~GH~~P~l~La~~La~rGh~VT~it~~~~~~~~ 51 (192)
+++.+|++.+...-||=.=.--+++.|++.|.+|.........+.+
T Consensus 10 g~rprvlvak~GlDgHd~gakvia~~l~d~GfeVi~~g~~~tp~e~ 55 (143)
T COG2185 10 GARPRVLVAKLGLDGHDRGAKVIARALADAGFEVINLGLFQTPEEA 55 (143)
T ss_pred CCCceEEEeccCccccccchHHHHHHHHhCCceEEecCCcCCHHHH
Confidence 3588999999887799888888999999999999998766554443
No 120
>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
Probab=54.67 E-value=33 Score=27.53 Aligned_cols=45 Identities=18% Similarity=0.156 Sum_probs=38.8
Q ss_pred CceEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEcCCchhhhhh
Q 029508 8 KAHAVCVPYPAQGHVSPMMQVAKLLHSKGFHITFVNTEFNHRRLI 52 (192)
Q Consensus 8 ~~~Il~~p~p~~GH~~P~l~La~~La~rGh~VT~it~~~~~~~~~ 52 (192)
..-+++.-.||.|.-+-.++++...+++|..|.++++......+.
T Consensus 23 g~~~lI~G~pGsGKT~f~~qfl~~~~~~ge~vlyvs~~e~~~~l~ 67 (260)
T COG0467 23 GSVVLITGPPGTGKTIFALQFLYEGAREGEPVLYVSTEESPEELL 67 (260)
T ss_pred CcEEEEEcCCCCcHHHHHHHHHHHHHhcCCcEEEEEecCCHHHHH
Confidence 446778888999999999999999999999999999987665543
No 121
>KOG2941 consensus Beta-1,4-mannosyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=54.63 E-value=55 Score=28.33 Aligned_cols=60 Identities=22% Similarity=0.313 Sum_probs=44.3
Q ss_pred CCCCceEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEcCCch--hhhhhhccCCCccCCCCCceeEecCC
Q 029508 5 GARKAHAVCVPYPAQGHVSPMMQVAKLLHSKGFHITFVNTEFN--HRRLIRSKGPEYVKGLPDFRFETIPD 73 (192)
Q Consensus 5 ~~~~~~Il~~p~p~~GH~~P~l~La~~La~rGh~VT~it~~~~--~~~~~~~~~~~~~~~~~~i~~~~l~~ 73 (192)
.+.+.|++++-..-.||--=|--=|.-|+..|.+|+++.-... .+.+ -++|+|+++.++.
T Consensus 9 ~~~k~ra~vvVLGDvGRSPRMqYHA~Sla~~gf~VdliGy~~s~p~e~l---------~~hprI~ih~m~~ 70 (444)
T KOG2941|consen 9 KSKKKRAIVVVLGDVGRSPRMQYHALSLAKLGFQVDLIGYVESIPLEEL---------LNHPRIRIHGMPN 70 (444)
T ss_pred ccccceEEEEEecccCCChHHHHHHHHHHHcCCeEEEEEecCCCChHHH---------hcCCceEEEeCCC
Confidence 3457788888888889965576779999999999999875433 2223 2358899998874
No 122
>COG0162 TyrS Tyrosyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=54.60 E-value=14 Score=32.27 Aligned_cols=36 Identities=17% Similarity=0.307 Sum_probs=26.5
Q ss_pred eEEEEcCC-C--ccChHHHHHHHHHHHhCCCeEEEEcCCc
Q 029508 10 HAVCVPYP-A--QGHVSPMMQVAKLLHSKGFHITFVNTEF 46 (192)
Q Consensus 10 ~Il~~p~p-~--~GH~~P~l~La~~La~rGh~VT~it~~~ 46 (192)
-+.+=|.. . -||+.|++.| +.|.+.||+|+++....
T Consensus 36 Y~GfDPTa~slHlGhlv~l~kL-~~fQ~aGh~~ivLigd~ 74 (401)
T COG0162 36 YIGFDPTAPSLHLGHLVPLMKL-RRFQDAGHKPIVLIGDA 74 (401)
T ss_pred EEeeCCCCCccchhhHHHHHHH-HHHHHCCCeEEEEeccc
Confidence 44455543 2 2899998876 67889999999998754
No 123
>cd03798 GT1_wlbH_like This family is most closely related to the GT1 family of glycosyltransferases. wlbH in Bordetella parapertussis has been shown to be required for the biosynthesis of a trisaccharide that, when attached to the B. pertussis lipopolysaccharide (LPS) core (band B), generates band A LPS.
Probab=54.35 E-value=21 Score=28.59 Aligned_cols=31 Identities=16% Similarity=0.146 Sum_probs=26.9
Q ss_pred CccChHHHHHHHHHHHhCCCeEEEEcCCchh
Q 029508 18 AQGHVSPMMQVAKLLHSKGFHITFVNTEFNH 48 (192)
Q Consensus 18 ~~GH~~P~l~La~~La~rGh~VT~it~~~~~ 48 (192)
..|+-.-+..+++.|.+.||+|++++.....
T Consensus 13 ~~g~~~~~~~~~~~l~~~g~~v~v~~~~~~~ 43 (377)
T cd03798 13 NGGGGIFVKELARALAKRGVEVTVLAPGPWG 43 (377)
T ss_pred CchHHHHHHHHHHHHHHCCCceEEEecCCCC
Confidence 4688888999999999999999999886544
No 124
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=53.77 E-value=13 Score=27.68 Aligned_cols=22 Identities=23% Similarity=0.288 Sum_probs=19.4
Q ss_pred HHHHHHHHHhCCCeEEEEcCCc
Q 029508 25 MMQVAKLLHSKGFHITFVNTEF 46 (192)
Q Consensus 25 ~l~La~~La~rGh~VT~it~~~ 46 (192)
-..+|..|+++||+|++...+.
T Consensus 11 G~AlA~~la~~g~~V~l~~~~~ 32 (157)
T PF01210_consen 11 GTALAALLADNGHEVTLWGRDE 32 (157)
T ss_dssp HHHHHHHHHHCTEEEEEETSCH
T ss_pred HHHHHHHHHHcCCEEEEEeccH
Confidence 3479999999999999999875
No 125
>TIGR02193 heptsyl_trn_I lipopolysaccharide heptosyltransferase I. This family consists of examples of ADP-heptose:LPS heptosyltransferase I, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria.
Probab=53.60 E-value=30 Score=28.50 Aligned_cols=42 Identities=14% Similarity=0.094 Sum_probs=36.7
Q ss_pred eEEEEcCCCccChHHHHHHHHHHHhC--CCeEEEEcCCchhhhh
Q 029508 10 HAVCVPYPAQGHVSPMMQVAKLLHSK--GFHITFVNTEFNHRRL 51 (192)
Q Consensus 10 ~Il~~p~p~~GH~~P~l~La~~La~r--Gh~VT~it~~~~~~~~ 51 (192)
+|+++-....|.+.-+..+.+.|.++ +.+||+++.+.....+
T Consensus 1 ~ILiir~~~iGD~vl~~p~l~~Lr~~~P~a~I~~l~~~~~~~~~ 44 (319)
T TIGR02193 1 RILIVKTSSLGDVIHTLPALTDIKRALPDVEIDWVVEEGFADIV 44 (319)
T ss_pred CEEEEecccHHHHHHHHHHHHHHHHhCCCCEEEEEEChhHhhhh
Confidence 57888888889999999999999997 9999999998776544
No 126
>cd03822 GT1_ecORF704_like This family is most closely related to the GT1 family of glycosyltransferases. ORF704 in E. coli has been shown to be involved in the biosynthesis of O-specific mannose homopolysaccharides.
Probab=53.42 E-value=21 Score=28.94 Aligned_cols=29 Identities=14% Similarity=0.148 Sum_probs=24.1
Q ss_pred ccChHHHHHHHHHHHhCCCeEEEEcCCch
Q 029508 19 QGHVSPMMQVAKLLHSKGFHITFVNTEFN 47 (192)
Q Consensus 19 ~GH~~P~l~La~~La~rGh~VT~it~~~~ 47 (192)
.|--.-...|+++|+++||+|++++....
T Consensus 13 gG~~~~~~~l~~~L~~~g~~v~v~~~~~~ 41 (366)
T cd03822 13 CGIATFTTDLVNALSARGPDVLVVSVAAL 41 (366)
T ss_pred CcHHHHHHHHHHHhhhcCCeEEEEEeecc
Confidence 35667789999999999999999986543
No 127
>cd01425 RPS2 Ribosomal protein S2 (RPS2), involved in formation of the translation initiation complex, where it might contact the messenger RNA and several components of the ribosome. It has been shown that in Escherichia coli RPS2 is essential for the binding of ribosomal protein S1 to the 30s ribosomal subunit. In humans, most likely in all vertebrates, and perhaps in all metazoans, the protein also functions as the 67 kDa laminin receptor (LAMR1 or 67LR), which is formed from a 37 kDa precursor, and is overexpressed in many tumors. 67LR is a cell surface receptor which interacts with a variety of ligands, laminin-1 and others. It is assumed that the ligand interactions are mediated via the conserved C-terminus, which becomes extracellular as the protein undergoes conformational changes which are not well understood. Specifically, a conserved palindromic motif, LMWWML, may participate in the interactions. 67LR plays essential roles in the adhesion of cells to the basement membrane an
Probab=53.29 E-value=93 Score=24.03 Aligned_cols=33 Identities=21% Similarity=0.097 Sum_probs=24.5
Q ss_pred CCeEEEEe-CCCc-chHHHHHHHhCCceEEecCCc
Q 029508 117 PPVTCVVS-DGIM-GFGRKAAQMLGILDIQFWTAS 149 (192)
Q Consensus 117 ~~~d~vI~-D~~~-~~~~~vA~~lgIP~i~~~t~~ 149 (192)
..||+||. |... ..+..-|.++|||.+.+.-+.
T Consensus 126 ~~Pdlviv~~~~~~~~ai~Ea~~l~IP~I~i~Dtn 160 (193)
T cd01425 126 RLPDLVIVLDPRKEHQAIREASKLGIPVIAIVDTN 160 (193)
T ss_pred cCCCEEEEeCCccchHHHHHHHHcCCCEEEEecCC
Confidence 46886655 7654 456788999999999987665
No 128
>PRK08305 spoVFB dipicolinate synthase subunit B; Reviewed
Probab=52.84 E-value=19 Score=28.23 Aligned_cols=39 Identities=10% Similarity=-0.047 Sum_probs=29.0
Q ss_pred eEEEEcCCCccChHH-HHHHHHHHHhCCCeEEEEcCCchhh
Q 029508 10 HAVCVPYPAQGHVSP-MMQVAKLLHSKGFHITFVNTEFNHR 49 (192)
Q Consensus 10 ~Il~~p~p~~GH~~P-~l~La~~La~rGh~VT~it~~~~~~ 49 (192)
+|++-- .|.+...- ..+|+++|.++|++|.++.|+...+
T Consensus 7 ~IllgV-TGsiaa~k~a~~lir~L~k~G~~V~vv~T~aA~~ 46 (196)
T PRK08305 7 RIGFGL-TGSHCTYDEVMPEIEKLVDEGAEVTPIVSYTVQT 46 (196)
T ss_pred EEEEEE-cCHHHHHHHHHHHHHHHHhCcCEEEEEECHhHHH
Confidence 555443 34445555 6899999999999999999887554
No 129
>PRK11519 tyrosine kinase; Provisional
Probab=52.62 E-value=2.1e+02 Score=26.99 Aligned_cols=41 Identities=7% Similarity=0.242 Sum_probs=33.0
Q ss_pred CceEEEEcC--CCccChHHHHHHHHHHHhCCCeEEEEcCCchh
Q 029508 8 KAHAVCVPY--PAQGHVSPMMQVAKLLHSKGFHITFVNTEFNH 48 (192)
Q Consensus 8 ~~~Il~~p~--p~~GH~~P~l~La~~La~rGh~VT~it~~~~~ 48 (192)
+.++++++. ||.|=-.-...||..|+..|++|-++-.+...
T Consensus 525 ~~kvi~vts~~~geGKTt~a~nLA~~la~~g~rvLlID~Dlr~ 567 (719)
T PRK11519 525 QNNVLMMTGVSPSIGKTFVCANLAAVISQTNKRVLLIDCDMRK 567 (719)
T ss_pred CceEEEEECCCCCCCHHHHHHHHHHHHHhCCCcEEEEeCCCCC
Confidence 456776665 67788888999999999999999999776543
No 130
>PF03808 Glyco_tran_WecB: Glycosyl transferase WecB/TagA/CpsF family; InterPro: IPR004629 The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in Enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.; GO: 0009058 biosynthetic process
Probab=52.52 E-value=99 Score=23.30 Aligned_cols=98 Identities=10% Similarity=0.037 Sum_probs=56.8
Q ss_pred HHHHHHHHHHHhCCCeEEEEcCCch-hhhhhhccCCCccCCCCCceeEecCCCCCCCCCCCCCCHHHHHHHHHHhCcHHH
Q 029508 23 SPMMQVAKLLHSKGFHITFVNTEFN-HRRLIRSKGPEYVKGLPDFRFETIPDGLPPSDRDATQDVPALSDSIRKNGLAPF 101 (192)
Q Consensus 23 ~P~l~La~~La~rGh~VT~it~~~~-~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (192)
.-+..|.+...++|.+|.++.+..- .+.+.+.. ...+|+++++-...+.-+ ....
T Consensus 35 dl~~~l~~~~~~~~~~ifllG~~~~~~~~~~~~l----~~~yP~l~ivg~~~g~f~--------------------~~~~ 90 (172)
T PF03808_consen 35 DLFPDLLRRAEQRGKRIFLLGGSEEVLEKAAANL----RRRYPGLRIVGYHHGYFD--------------------EEEE 90 (172)
T ss_pred HHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHHH----HHHCCCeEEEEecCCCCC--------------------hhhH
Confidence 3466677777778999999987642 22221111 024567777754322110 1112
Q ss_pred HHHHHHhhcCCCCCCCCeEEEEeCCCcc----hHHHHHHHhCCceEEecCCchH
Q 029508 102 LELLGKLNSSADDQVPPVTCVVSDGIMG----FGRKAAQMLGILDIQFWTASAC 151 (192)
Q Consensus 102 ~~ll~~l~~~~~~~~~~~d~vI~D~~~~----~~~~vA~~lgIP~i~~~t~~a~ 151 (192)
+++++.+++ .++|+|+.-+-.+ |+....++++.+ +.+...++.
T Consensus 91 ~~i~~~I~~------~~pdiv~vglG~PkQE~~~~~~~~~l~~~-v~i~vG~~~ 137 (172)
T PF03808_consen 91 EAIINRINA------SGPDIVFVGLGAPKQERWIARHRQRLPAG-VIIGVGGAF 137 (172)
T ss_pred HHHHHHHHH------cCCCEEEEECCCCHHHHHHHHHHHHCCCC-EEEEECchh
Confidence 334444443 4789999988776 677777888888 444444443
No 131
>PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G ....
Probab=52.41 E-value=20 Score=22.67 Aligned_cols=20 Identities=20% Similarity=0.360 Sum_probs=16.5
Q ss_pred HHHHHHHHHhCCCeEEEEcC
Q 029508 25 MMQVAKLLHSKGFHITFVNT 44 (192)
Q Consensus 25 ~l~La~~La~rGh~VT~it~ 44 (192)
-+..|..|+++|++|+++=.
T Consensus 8 Gl~aA~~L~~~g~~v~v~E~ 27 (68)
T PF13450_consen 8 GLAAAYYLAKAGYRVTVFEK 27 (68)
T ss_dssp HHHHHHHHHHTTSEEEEEES
T ss_pred HHHHHHHHHHCCCcEEEEec
Confidence 46678999999999999843
No 132
>PF01975 SurE: Survival protein SurE; InterPro: IPR002828 This entry represents a SurE-like structural domain with a 3-layer alpha/bete/alpha topology that bears some topological similarity to the N-terminal domain of the glutaminase/asparaginase family. This domain is found in the stationary phase survival protein SurE, a metal ion-dependent phosphatase found in eubacteria, archaea and eukaryotes. In Escherichia coli, SurE also has activity as a nucleotidase and exopolyphosphatase, and may be involved in the stress response []. E. coli cells with mutations in the surE gene survive poorly in stationary phase []. The structure of SurE homologues have been determined from Thermotoga maritima [] and the archaea Pyrobaculum aerophilum []. The T. maritima SurE homologue has phosphatase activity that is inhibited by vanadate or tungstate, both of which bind adjacent to the divalent metal ion. This domain is found in acid phosphatases (3.1.3.2 from EC), 5'-nucleotidases (3.1.3.5 from EC), 3'-nucleotidases (3.1.3.6 from EC) and exopolyphosphatases (3.6.1.11 from EC).; GO: 0016787 hydrolase activity; PDB: 1L5X_B 2V4O_D 2V4N_A 2WQK_B 2E6G_G 2E69_D 2E6C_C 2E6B_D 2E6E_A 2E6H_A ....
Probab=51.94 E-value=14 Score=28.84 Aligned_cols=27 Identities=19% Similarity=0.274 Sum_probs=22.1
Q ss_pred HHHHHHHHHHhCCCeEEEEcCCchhhh
Q 029508 24 PMMQVAKLLHSKGFHITFVNTEFNHRR 50 (192)
Q Consensus 24 P~l~La~~La~rGh~VT~it~~~~~~~ 50 (192)
=+..|.++|.+.||+|+++.+...+.-
T Consensus 15 Gi~aL~~~L~~~g~~V~VvAP~~~~Sg 41 (196)
T PF01975_consen 15 GIRALAKALSALGHDVVVVAPDSEQSG 41 (196)
T ss_dssp HHHHHHHHHTTTSSEEEEEEESSSTTT
T ss_pred HHHHHHHHHHhcCCeEEEEeCCCCCcC
Confidence 367899999778899999999876543
No 133
>PRK05986 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase; Validated
Probab=51.04 E-value=36 Score=26.53 Aligned_cols=35 Identities=14% Similarity=0.133 Sum_probs=32.4
Q ss_pred CceEEEEcCCCccChHHHHHHHHHHHhCCCeEEEE
Q 029508 8 KAHAVCVPYPAQGHVSPMMQVAKLLHSKGFHITFV 42 (192)
Q Consensus 8 ~~~Il~~p~p~~GH~~P~l~La~~La~rGh~VT~i 42 (192)
+..|.++...|.|=....+.++-+.+.+|++|.++
T Consensus 22 ~g~v~v~~g~GkGKtt~a~g~a~ra~g~G~~V~iv 56 (191)
T PRK05986 22 KGLLIVHTGNGKGKSTAAFGMALRAVGHGKKVGVV 56 (191)
T ss_pred CCeEEEECCCCCChHHHHHHHHHHHHHCCCeEEEE
Confidence 56889999999999999999999999999999987
No 134
>cd03789 GT1_LPS_heptosyltransferase Lipopolysaccharide heptosyltransferase is involved in the biosynthesis of lipooligosaccharide (LOS). Lipopolysaccharide (LPS) is a major component of the outer membrane of gram-negative bacteria. LPS heptosyltransferase transfers heptose molecules from ADP-heptose to 3-deoxy-D-manno-octulosonic acid (KDO), a part of the inner core component of LPS. This family belongs to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=49.93 E-value=1.3e+02 Score=24.06 Aligned_cols=42 Identities=14% Similarity=0.173 Sum_probs=36.1
Q ss_pred eEEEEcCCCccChHHHHHHHHHHHhC--CCeEEEEcCCchhhhh
Q 029508 10 HAVCVPYPAQGHVSPMMQVAKLLHSK--GFHITFVNTEFNHRRL 51 (192)
Q Consensus 10 ~Il~~p~p~~GH~~P~l~La~~La~r--Gh~VT~it~~~~~~~~ 51 (192)
+|+++-.-+-|-+.-+..+.+.|.++ +-+|++++.......+
T Consensus 1 kILii~~~~iGD~i~~~p~l~~Lk~~~P~~~I~~l~~~~~~~l~ 44 (279)
T cd03789 1 RILVIRLSWIGDVVLATPLLRALKARYPDARITVLAPPWFAPLL 44 (279)
T ss_pred CEEEEecccHHHHHHHHHHHHHHHHHCCCCEEEEEEChhhHHHH
Confidence 57888888889999999999999996 4899999998776644
No 135
>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional
Probab=49.68 E-value=2.3e+02 Score=26.71 Aligned_cols=40 Identities=10% Similarity=0.288 Sum_probs=31.6
Q ss_pred CceEEEEcC--CCccChHHHHHHHHHHHhCCCeEEEEcCCch
Q 029508 8 KAHAVCVPY--PAQGHVSPMMQVAKLLHSKGFHITFVNTEFN 47 (192)
Q Consensus 8 ~~~Il~~p~--p~~GH~~P~l~La~~La~rGh~VT~it~~~~ 47 (192)
..++++++. |+.|=-.-...||..|+..|.+|-++-.+..
T Consensus 530 ~~kvI~vtS~~~g~GKTtva~nLA~~la~~G~rVLlID~D~r 571 (726)
T PRK09841 530 ENNILMITGATPDSGKTFVSSTLAAVIAQSDQKVLFIDADLR 571 (726)
T ss_pred CCeEEEEecCCCCCCHHHHHHHHHHHHHhCCCeEEEEeCCCC
Confidence 456777766 4557778889999999999999999877644
No 136
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=49.27 E-value=26 Score=22.47 Aligned_cols=24 Identities=17% Similarity=0.163 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHhCCCeEEEEcCCc
Q 029508 23 SPMMQVAKLLHSKGFHITFVNTEF 46 (192)
Q Consensus 23 ~P~l~La~~La~rGh~VT~it~~~ 46 (192)
..-+++|..|+++|.+||++....
T Consensus 9 ~ig~E~A~~l~~~g~~vtli~~~~ 32 (80)
T PF00070_consen 9 FIGIELAEALAELGKEVTLIERSD 32 (80)
T ss_dssp HHHHHHHHHHHHTTSEEEEEESSS
T ss_pred HHHHHHHHHHHHhCcEEEEEeccc
Confidence 356899999999999999997654
No 137
>COG2910 Putative NADH-flavin reductase [General function prediction only]
Probab=49.06 E-value=17 Score=28.52 Aligned_cols=35 Identities=11% Similarity=0.149 Sum_probs=24.1
Q ss_pred eEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEcCCchh
Q 029508 10 HAVCVPYPAQGHVSPMMQVAKLLHSKGFHITFVNTEFNH 48 (192)
Q Consensus 10 ~Il~~p~p~~GH~~P~l~La~~La~rGh~VT~it~~~~~ 48 (192)
+|.++.-. |+. --.+.++...|||+||-++-...+
T Consensus 2 KIaiIgAs--G~~--Gs~i~~EA~~RGHeVTAivRn~~K 36 (211)
T COG2910 2 KIAIIGAS--GKA--GSRILKEALKRGHEVTAIVRNASK 36 (211)
T ss_pred eEEEEecC--chh--HHHHHHHHHhCCCeeEEEEeChHh
Confidence 56666533 332 236889999999999999865443
No 138
>COG2894 MinD Septum formation inhibitor-activating ATPase [Cell division and chromosome partitioning]
Probab=47.82 E-value=40 Score=27.34 Aligned_cols=37 Identities=14% Similarity=0.282 Sum_probs=30.5
Q ss_pred ceEEEEcC--CCccChHHHHHHHHHHHhCCCeEEEEcCC
Q 029508 9 AHAVCVPY--PAQGHVSPMMQVAKLLHSKGFHITFVNTE 45 (192)
Q Consensus 9 ~~Il~~p~--p~~GH~~P~l~La~~La~rGh~VT~it~~ 45 (192)
.++.++++ .|.|--...-.|+.+||.+|+.|.++-.+
T Consensus 2 ~~iIVvTSGKGGVGKTTttAnig~aLA~~GkKv~liD~D 40 (272)
T COG2894 2 ARIIVVTSGKGGVGKTTTTANIGTALAQLGKKVVLIDFD 40 (272)
T ss_pred ceEEEEecCCCCcCccchhHHHHHHHHHcCCeEEEEecC
Confidence 46666665 55678899999999999999999998665
No 139
>PRK09620 hypothetical protein; Provisional
Probab=47.54 E-value=22 Score=28.46 Aligned_cols=21 Identities=29% Similarity=0.336 Sum_probs=18.1
Q ss_pred HHHHHHHHHhCCCeEEEEcCC
Q 029508 25 MMQVAKLLHSKGFHITFVNTE 45 (192)
Q Consensus 25 ~l~La~~La~rGh~VT~it~~ 45 (192)
-.+||++|.++|++|+++...
T Consensus 32 Gs~LA~~L~~~Ga~V~li~g~ 52 (229)
T PRK09620 32 GRIIAEELISKGAHVIYLHGY 52 (229)
T ss_pred HHHHHHHHHHCCCeEEEEeCC
Confidence 368899999999999998754
No 140
>PRK01021 lpxB lipid-A-disaccharide synthase; Reviewed
Probab=47.33 E-value=39 Score=31.18 Aligned_cols=47 Identities=13% Similarity=0.023 Sum_probs=29.8
Q ss_pred HHHHHHHHHhhcCCCCCCCCeEEEEe-CC--CcchHHHHHHHhCC--ceEEecCCchH
Q 029508 99 APFLELLGKLNSSADDQVPPVTCVVS-DG--IMGFGRKAAQMLGI--LDIQFWTASAC 151 (192)
Q Consensus 99 ~~~~~ll~~l~~~~~~~~~~~d~vI~-D~--~~~~~~~vA~~lgI--P~i~~~t~~a~ 151 (192)
..++++.+.+.+ .+||++|. |. |......-+++.|+ |++.+-+-...
T Consensus 297 ~~~~~l~~~i~~------~kPD~vIlID~PgFNlrLAK~lkk~Gi~ipviyYVsPqVW 348 (608)
T PRK01021 297 YRYRKLYKTILK------TNPRTVICIDFPDFHFLLIKKLRKRGYKGKIVHYVCPSIW 348 (608)
T ss_pred HHHHHHHHHHHh------cCCCEEEEeCCCCCCHHHHHHHHhcCCCCCEEEEECccce
Confidence 334555555543 58998877 86 33445567788896 98776665543
No 141
>PRK07773 replicative DNA helicase; Validated
Probab=47.31 E-value=1.3e+02 Score=29.04 Aligned_cols=42 Identities=12% Similarity=0.278 Sum_probs=33.5
Q ss_pred EEEEcCCCccChHHHHHHHHHHHhC-CCeEEEEcCCchhhhhh
Q 029508 11 AVCVPYPAQGHVSPMMQVAKLLHSK-GFHITFVNTEFNHRRLI 52 (192)
Q Consensus 11 Il~~p~p~~GH~~P~l~La~~La~r-Gh~VT~it~~~~~~~~~ 52 (192)
+++..-|+.|=-.-.++++...+.+ |..|.+++.+.....+.
T Consensus 220 ivIagrPg~GKT~fal~ia~~~a~~~~~~V~~fSlEms~~ql~ 262 (886)
T PRK07773 220 IIVAARPSMGKTTFGLDFARNCAIRHRLAVAIFSLEMSKEQLV 262 (886)
T ss_pred EEEEeCCCCCcHHHHHHHHHHHHHhcCCeEEEEecCCCHHHHH
Confidence 4556668999999999999999854 88999999887665553
No 142
>TIGR02852 spore_dpaB dipicolinic acid synthetase, B subunit. Members of this family represent the B subunit of dipicolinic acid synthetase, an enzyme that synthesizes a small molecule that appears to confer heat stability to bacterial endospores such as those of Bacillus subtilis. The A and B subunits are together in what was originally designated the spoVF locus for stage V of endospore formation.
Probab=47.25 E-value=28 Score=27.06 Aligned_cols=39 Identities=13% Similarity=0.037 Sum_probs=26.5
Q ss_pred eEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEcCCchh
Q 029508 10 HAVCVPYPAQGHVSPMMQVAKLLHSKGFHITFVNTEFNH 48 (192)
Q Consensus 10 ~Il~~p~p~~GH~~P~l~La~~La~rGh~VT~it~~~~~ 48 (192)
||++--..+.|=+--..++.++|.++|++|+++.++...
T Consensus 2 ~I~lgITGs~~a~~a~~~ll~~L~~~g~~V~vI~S~~A~ 40 (187)
T TIGR02852 2 RIGFGLTGSHCTLEAVMPQLEKLVDEGAEVTPIVSETVQ 40 (187)
T ss_pred EEEEEEecHHHHHHHHHHHHHHHHhCcCEEEEEEchhHH
Confidence 444443333333333359999999999999999988654
No 143
>PLN02891 IMP cyclohydrolase
Probab=46.76 E-value=89 Score=28.43 Aligned_cols=43 Identities=19% Similarity=0.249 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHhCCCeEEEEcCCchhhhhhhccCCCccCCCCCceeEecCC--CCCC
Q 029508 23 SPMMQVAKLLHSKGFHITFVNTEFNHRRLIRSKGPEYVKGLPDFRFETIPD--GLPP 77 (192)
Q Consensus 23 ~P~l~La~~La~rGh~VT~it~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~--~~~~ 77 (192)
.=..+||+.|.+.| |.++.|..+.+.+. . .+|.+..+.+ ++|+
T Consensus 33 tgi~~fAk~L~~~g--veIiSTgGTak~L~-e---------~Gi~v~~Vsd~TgfPE 77 (547)
T PLN02891 33 TDLALLANGLQELG--YTIVSTGGTASALE-A---------AGVSVTKVEELTNFPE 77 (547)
T ss_pred cCHHHHHHHHHHCC--CEEEEcchHHHHHH-H---------cCCceeeHHhccCCch
Confidence 44689999999987 55677777776663 2 2466665554 5554
No 144
>cd03807 GT1_WbnK_like This family is most closely related to the GT1 family of glycosyltransferases. WbnK in Shigella dysenteriae has been shown to be involved in the type 7 O-antigen biosynthesis.
Probab=46.11 E-value=38 Score=27.12 Aligned_cols=29 Identities=14% Similarity=0.149 Sum_probs=25.5
Q ss_pred CccChHHHHHHHHHHHhCCCeEEEEcCCc
Q 029508 18 AQGHVSPMMQVAKLLHSKGFHITFVNTEF 46 (192)
Q Consensus 18 ~~GH~~P~l~La~~La~rGh~VT~it~~~ 46 (192)
..|.-.....|++.|.++||+|.+++...
T Consensus 11 ~gG~~~~~~~l~~~l~~~~~~v~~~~~~~ 39 (365)
T cd03807 11 VGGAERMLVRLLKGLDRDRFEHVVISLTD 39 (365)
T ss_pred CccHHHHHHHHHHHhhhccceEEEEecCc
Confidence 35799999999999999999999998654
No 145
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=46.02 E-value=31 Score=27.71 Aligned_cols=35 Identities=17% Similarity=0.319 Sum_probs=29.7
Q ss_pred eEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEcC
Q 029508 10 HAVCVPYPAQGHVSPMMQVAKLLHSKGFHITFVNT 44 (192)
Q Consensus 10 ~Il~~p~p~~GH~~P~l~La~~La~rGh~VT~it~ 44 (192)
=|.+...|+.|--.-.-+|+|.|.+++|+|..++.
T Consensus 3 LiIlTGyPgsGKTtfakeLak~L~~~i~~vi~l~k 37 (261)
T COG4088 3 LIILTGYPGSGKTTFAKELAKELRQEIWRVIHLEK 37 (261)
T ss_pred eEEEecCCCCCchHHHHHHHHHHHHhhhhccccch
Confidence 35677779999999999999999999998876654
No 146
>PRK06249 2-dehydropantoate 2-reductase; Provisional
Probab=45.99 E-value=27 Score=29.02 Aligned_cols=35 Identities=17% Similarity=0.170 Sum_probs=26.8
Q ss_pred CCceEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEcCCc
Q 029508 7 RKAHAVCVPYPAQGHVSPMMQVAKLLHSKGFHITFVNTEF 46 (192)
Q Consensus 7 ~~~~Il~~p~p~~GH~~P~l~La~~La~rGh~VT~it~~~ 46 (192)
++.+|+++-..+.| .-+|..|+++||+|+++.-..
T Consensus 4 ~~m~I~IiG~GaiG-----~~lA~~L~~~g~~V~~~~r~~ 38 (313)
T PRK06249 4 ETPRIGIIGTGAIG-----GFYGAMLARAGFDVHFLLRSD 38 (313)
T ss_pred cCcEEEEECCCHHH-----HHHHHHHHHCCCeEEEEEeCC
Confidence 35689988655555 347889999999999998654
No 147
>PF05889 SLA_LP_auto_ag: Soluble liver antigen/liver pancreas antigen (SLA/LP autoantigen); InterPro: IPR008829 This family consists of several eukaryotic and archaeal proteins which are related to the Homo sapiens soluble liver antigen/liver pancreas antigen (SLA/LP autoantigen). Autoantibodies are a hallmark of autoimmune hepatitis, but most are not disease specific. Autoantibodies to soluble liver antigen (SLA) and to liver and pancreas antigen (LP) have been described as disease specific, occurring in about 30% of all patients with autoimmune hepatitis []. The function of SLA/LP is unknown, however, it has been suggested that the protein may function as a serine hydroxymethyltransferase and may be an important enzyme in the thus far poorly understood selenocysteine pathway []. The archaeal sequences Q8TXK0 from SWISSPROT and Q8TYR3 from SWISSPROT are annotated as being pyridoxal phosphate-dependent enzymes.; GO: 0016740 transferase activity; PDB: 2E7J_B 2E7I_B 2Z67_C 3HL2_D 3BC8_A 3BCA_A 3BCB_A.
Probab=45.40 E-value=37 Score=29.49 Aligned_cols=73 Identities=14% Similarity=0.059 Sum_probs=44.6
Q ss_pred HHHHHHHhhcCCCCCCCCeEEEEe--CCCcchH-------HHHHHHhCCceEEecCCchHHHHHHHhHHHHHHCCCCCC-
Q 029508 101 FLELLGKLNSSADDQVPPVTCVVS--DGIMGFG-------RKAAQMLGILDIQFWTASACGMMGYLQHVELLKRGIVPF- 170 (192)
Q Consensus 101 ~~~ll~~l~~~~~~~~~~~d~vI~--D~~~~~~-------~~vA~~lgIP~i~~~t~~a~~~~~~~~lp~l~~~~~~~~- 170 (192)
+++.+++..+ .+.-||++ |.|.+-. ..+++++|||.++=...+.-+..++..+-+-.+.|..+.
T Consensus 144 ie~~i~~~G~------~~iLcvltttscfapr~~D~i~~IakiC~~~~IPhlvNnAYgvQ~~~~~~~i~~a~~~GRvda~ 217 (389)
T PF05889_consen 144 IEAKIEELGA------DNILCVLTTTSCFAPRLPDDIEEIAKICKEYDIPHLVNNAYGVQSSKCMHLIQQAWRVGRVDAF 217 (389)
T ss_dssp HHHHHHHHCG------GGEEEEEEESSTTTTB----HHHHHHHHHHHT--EEEEGTTTTT-HHHHHHHHHHHHHSTCSEE
T ss_pred HHHHHHHhCC------CCeEEEEEecCccCCCCCccHHHHHHHHHHcCCceEEccchhhhHHHHHHHHHHHHhcCCccee
Confidence 4555666533 34667776 6676543 347889999999988888777777766666666676663
Q ss_pred -CCCCchhhh
Q 029508 171 -QGTCLSFLF 179 (192)
Q Consensus 171 -~~~~~~~~~ 179 (192)
+..+.+|++
T Consensus 218 vqS~dkNF~V 227 (389)
T PF05889_consen 218 VQSTDKNFMV 227 (389)
T ss_dssp EEEHHHHHCE
T ss_pred eeecCCCEEe
Confidence 233455544
No 148
>COG1090 Predicted nucleoside-diphosphate sugar epimerase [General function prediction only]
Probab=45.12 E-value=1.1e+02 Score=25.54 Aligned_cols=23 Identities=13% Similarity=0.208 Sum_probs=18.3
Q ss_pred HHHHHHHHhCCCeEEEEcCCchh
Q 029508 26 MQVAKLLHSKGFHITFVNTEFNH 48 (192)
Q Consensus 26 l~La~~La~rGh~VT~it~~~~~ 48 (192)
.+|+.+|...||+||+++=....
T Consensus 12 ~~L~~~L~~~gh~v~iltR~~~~ 34 (297)
T COG1090 12 RALTARLRKGGHQVTILTRRPPK 34 (297)
T ss_pred HHHHHHHHhCCCeEEEEEcCCcc
Confidence 46788888999999999865433
No 149
>PF04413 Glycos_transf_N: 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase); InterPro: IPR007507 This is a domain found in proteins that transfer activated sugars to a variety of substrates, including glycogen, fructose-6-phosphate and lipopolysaccharides. Proteins bearing this domain transfer UDP, ADP, GDP or CMP linked sugars. This region is flanked at the N terminus by a signal peptide and at the C terminus by a glycosyl transferase group 1 domain (IPR001296 from INTERPRO). The eukaryotic glycogen synthases may be distant members of this bacterial family [].; GO: 0005529 sugar binding, 0016740 transferase activity, 0005975 carbohydrate metabolic process; PDB: 2XCI_A 2XCU_B.
Probab=44.94 E-value=1.3e+02 Score=23.05 Aligned_cols=117 Identities=15% Similarity=0.099 Sum_probs=49.3
Q ss_pred eEEEEcCCCccChHHHHHHHHHHHhC--CCeEEEEcCCchhhhhhhccCCCccCCCCCceeEecCCCCCCCCCCCCCCHH
Q 029508 10 HAVCVPYPAQGHVSPMMQVAKLLHSK--GFHITFVNTEFNHRRLIRSKGPEYVKGLPDFRFETIPDGLPPSDRDATQDVP 87 (192)
Q Consensus 10 ~Il~~p~p~~GH~~P~l~La~~La~r--Gh~VT~it~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~ 87 (192)
.++-+=....|=++-..+|+++|.++ |++|.+-++............. +.+....+|-+ .
T Consensus 22 ~~iWiHa~SvGE~~a~~~Li~~l~~~~p~~~illT~~T~tg~~~~~~~~~------~~v~~~~~P~D-----------~- 83 (186)
T PF04413_consen 22 PLIWIHAASVGEVNAARPLIKRLRKQRPDLRILLTTTTPTGREMARKLLP------DRVDVQYLPLD-----------F- 83 (186)
T ss_dssp T-EEEE-SSHHHHHHHHHHHHHHTT---TS-EEEEES-CCHHHHHHGG-G------GG-SEEE---S-----------S-
T ss_pred CcEEEEECCHHHHHHHHHHHHHHHHhCCCCeEEEEecCCchHHHHHHhCC------CCeEEEEeCcc-----------C-
Confidence 33434445678899999999999987 8888887764443333222110 12222223311 1
Q ss_pred HHHHHHHHhCcHHHHHHHHHhhcCCCCCCCCeE-EEEeCCC-cchHHHHHHHhCCceEEecCC-chHHHHHHHhHHHHH
Q 029508 88 ALSDSIRKNGLAPFLELLGKLNSSADDQVPPVT-CVVSDGI-MGFGRKAAQMLGILDIQFWTA-SACGMMGYLQHVELL 163 (192)
Q Consensus 88 ~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~d-~vI~D~~-~~~~~~vA~~lgIP~i~~~t~-~a~~~~~~~~lp~l~ 163 (192)
...++++++.+ +|| +|+.+.= ++-....|++.|||.+.+..- +.-.+.-|..++.+.
T Consensus 84 ----------~~~~~rfl~~~---------~P~~~i~~EtElWPnll~~a~~~~ip~~LvNarls~~s~~~~~~~~~~~ 143 (186)
T PF04413_consen 84 ----------PWAVRRFLDHW---------RPDLLIWVETELWPNLLREAKRRGIPVVLVNARLSERSFRRYRRFPFLF 143 (186)
T ss_dssp ----------HHHHHHHHHHH-----------SEEEEES----HHHHHH-----S-EEEEEE--------------HHH
T ss_pred ----------HHHHHHHHHHh---------CCCEEEEEccccCHHHHHHHhhcCCCEEEEeeeeccccchhhhhhHHHH
Confidence 22346677775 344 5555552 233456778899999988763 333444444444433
No 150
>PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B ....
Probab=44.92 E-value=30 Score=26.51 Aligned_cols=45 Identities=22% Similarity=0.114 Sum_probs=28.9
Q ss_pred HHHHHHHHHhhcCCCCCCCCeEEEEeCCCcchH--HHHHHHhCCceEEecCCchH
Q 029508 99 APFLELLGKLNSSADDQVPPVTCVVSDGIMGFG--RKAAQMLGILDIQFWTASAC 151 (192)
Q Consensus 99 ~~~~~ll~~l~~~~~~~~~~~d~vI~D~~~~~~--~~vA~~lgIP~i~~~t~~a~ 151 (192)
+.++++++... ++.-+|.|+|++-+ ..+|.++|--+|.+-....+
T Consensus 179 ~l~~~lI~~~t--------~~gdiVlDpF~GSGTT~~aa~~l~R~~ig~E~~~~y 225 (231)
T PF01555_consen 179 ELIERLIKAST--------NPGDIVLDPFAGSGTTAVAAEELGRRYIGIEIDEEY 225 (231)
T ss_dssp HHHHHHHHHHS---------TT-EEEETT-TTTHHHHHHHHTT-EEEEEESSHHH
T ss_pred HHHHHHHHhhh--------ccceeeehhhhccChHHHHHHHcCCeEEEEeCCHHH
Confidence 34577776642 34568899999653 67889999998887665543
No 151
>PRK06732 phosphopantothenate--cysteine ligase; Validated
Probab=44.66 E-value=25 Score=27.95 Aligned_cols=31 Identities=19% Similarity=0.290 Sum_probs=21.7
Q ss_pred EEcCCCccChHHHHHHHHHHHhCCCeEEEEcCC
Q 029508 13 CVPYPAQGHVSPMMQVAKLLHSKGFHITFVNTE 45 (192)
Q Consensus 13 ~~p~p~~GH~~P~l~La~~La~rGh~VT~it~~ 45 (192)
+++..+.|- --.+||++|+++|++|+++...
T Consensus 19 ~itN~SSG~--iG~aLA~~L~~~G~~V~li~r~ 49 (229)
T PRK06732 19 GITNHSTGQ--LGKIIAETFLAAGHEVTLVTTK 49 (229)
T ss_pred eecCccchH--HHHHHHHHHHhCCCEEEEEECc
Confidence 344444443 2467899999999999998743
No 152
>cd05844 GT1_like_7 Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center
Probab=44.56 E-value=1.7e+02 Score=23.84 Aligned_cols=29 Identities=14% Similarity=-0.034 Sum_probs=20.0
Q ss_pred CCeEEEEeCCCc--chHHHHHHHhCCceEEe
Q 029508 117 PPVTCVVSDGIM--GFGRKAAQMLGILDIQF 145 (192)
Q Consensus 117 ~~~d~vI~D~~~--~~~~~vA~~lgIP~i~~ 145 (192)
.++|+|..-... .++..+++++|+|.+..
T Consensus 81 ~~~dvvh~~~~~~~~~~~~~~~~~~~p~i~~ 111 (367)
T cd05844 81 HRPDLVHAHFGFDGVYALPLARRLGVPLVVT 111 (367)
T ss_pred hCCCEEEeccCchHHHHHHHHHHcCCCEEEE
Confidence 478988874332 23456789999999863
No 153
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=44.42 E-value=49 Score=27.21 Aligned_cols=42 Identities=10% Similarity=0.127 Sum_probs=32.8
Q ss_pred CceEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEcCCchhh
Q 029508 8 KAHAVCVPYPAQGHVSPMMQVAKLLHSKGFHITFVNTEFNHR 49 (192)
Q Consensus 8 ~~~Il~~p~p~~GH~~P~l~La~~La~rGh~VT~it~~~~~~ 49 (192)
...|.+.-.||.|--.-.-.|++.|.++|++|-++..++...
T Consensus 29 a~~iGiTG~PGaGKSTli~~l~~~~~~~g~~VaVlAVDPSSp 70 (266)
T PF03308_consen 29 AHVIGITGPPGAGKSTLIDALIRELRERGKRVAVLAVDPSSP 70 (266)
T ss_dssp SEEEEEEE-TTSSHHHHHHHHHHHHHHTT--EEEEEE-GGGG
T ss_pred ceEEEeeCCCCCcHHHHHHHHHHHHhhcCCceEEEEECCCCC
Confidence 446668888999999999999999999999999998876654
No 154
>PF03720 UDPG_MGDP_dh_C: UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain; InterPro: IPR014027 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the C-terminal substrate-binding domain of these enzymes. Structural studies indicate that this domain forms an incomplete dinucleotide binding fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3GG2_D 1DLI_A 1DLJ_A 2Y0E_D 2Y0D_B 2Y0C_D 1MV8_B 1MUU_A 1MFZ_C 3TDK_B ....
Probab=44.34 E-value=31 Score=23.74 Aligned_cols=29 Identities=14% Similarity=0.400 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHhCCCeEEEEcCCchhhhh
Q 029508 23 SPMMQVAKLLHSKGFHITFVNTEFNHRRL 51 (192)
Q Consensus 23 ~P~l~La~~La~rGh~VT~it~~~~~~~~ 51 (192)
.|.+.|++.|.++|.+|.+.=+.-.....
T Consensus 17 Sp~~~l~~~L~~~g~~V~~~DP~v~~~~~ 45 (106)
T PF03720_consen 17 SPALELIEELKERGAEVSVYDPYVDEEEI 45 (106)
T ss_dssp -HHHHHHHHHHHTT-EEEEE-TTSHHHHH
T ss_pred CHHHHHHHHHHHCCCEEEEECCccChHHH
Confidence 68999999999999999998776555433
No 155
>cd02034 CooC The accessory protein CooC, which contains a nucleotide-binding domain (P-loop) near the N-terminus, participates in the maturation of the nickel center of carbon monoxide dehydrogenase (CODH). CODH from Rhodospirillum rubrum catalyzes the reversible oxidation of CO to CO2. CODH contains a nickel-iron-sulfur cluster (C-center) and an iron-sulfur cluster (B-center). CO oxidation occurs at the C-center. Three accessory proteins encoded by cooCTJ genes are involved in nickel incorporation into a nickel site. CooC functions as a nickel insertase that mobilizes nickel to apoCODH using energy released from ATP hydrolysis. CooC is a homodimer and has NTPase activities. Mutation at the P-loop abolishs its function.
Probab=43.51 E-value=66 Score=22.63 Aligned_cols=37 Identities=14% Similarity=0.143 Sum_probs=32.0
Q ss_pred eEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEcCCc
Q 029508 10 HAVCVPYPAQGHVSPMMQVAKLLHSKGFHITFVNTEF 46 (192)
Q Consensus 10 ~Il~~p~p~~GH~~P~l~La~~La~rGh~VT~it~~~ 46 (192)
||++..-++.|=-.....+++.|+++|.+|-++.++.
T Consensus 1 ~i~~~GkgG~GKTt~a~~la~~l~~~g~~V~~id~D~ 37 (116)
T cd02034 1 KIAITGKGGVGKTTIAALLARYLAEKGKPVLAIDADP 37 (116)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEECCc
Confidence 4677777888988889999999999999999888775
No 156
>cd02065 B12-binding_like B12 binding domain (B12-BD). Most of the members bind different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide. This domain is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins. Not all members of this family contain the conserved binding motif.
Probab=43.24 E-value=65 Score=22.22 Aligned_cols=39 Identities=15% Similarity=0.118 Sum_probs=31.5
Q ss_pred EEEEcCCCccChHHHHHHHHHHHhCCCeEEEEcCCchhh
Q 029508 11 AVCVPYPAQGHVSPMMQVAKLLHSKGFHITFVNTEFNHR 49 (192)
Q Consensus 11 Il~~p~p~~GH~~P~l~La~~La~rGh~VT~it~~~~~~ 49 (192)
++....++..|-.-..-++..|.++|++|.++......+
T Consensus 2 ~l~~~~~~~~h~lg~~~~~~~l~~~G~~v~~l~~~~~~~ 40 (125)
T cd02065 2 VLGATVGGDVHDIGKNIVAIALRDNGFEVIDLGVDVPPE 40 (125)
T ss_pred EEEEEcCCchhhHHHHHHHHHHHHCCCEEEEcCCCCCHH
Confidence 455666788899999999999999999999997654433
No 157
>COG1797 CobB Cobyrinic acid a,c-diamide synthase [Coenzyme metabolism]
Probab=42.98 E-value=35 Score=30.13 Aligned_cols=30 Identities=10% Similarity=0.256 Sum_probs=24.0
Q ss_pred EEcCCCccChHHHHHHHHHHHhCCCeEEEE
Q 029508 13 CVPYPAQGHVSPMMQVAKLLHSKGFHITFV 42 (192)
Q Consensus 13 ~~p~p~~GH~~P~l~La~~La~rGh~VT~i 42 (192)
--|..+.|--.-.+.|+++|++||++|--+
T Consensus 6 Ag~~SG~GKTTvT~glm~aL~~rg~~Vqpf 35 (451)
T COG1797 6 AGTSSGSGKTTVTLGLMRALRRRGLKVQPF 35 (451)
T ss_pred ecCCCCCcHHHHHHHHHHHHHhcCCccccc
Confidence 345567788899999999999999887543
No 158
>TIGR00234 tyrS tyrosyl-tRNA synthetase. This tyrosyl-tRNA synthetase model starts picking up tryptophanyl-tRNA synthetases at scores of 0 and below. The proteins found by this model have a deep split between two groups. One group contains bacterial and organellar eukaryotic examples. The other contains archaeal and cytosolic eukaryotic examples.
Probab=42.16 E-value=24 Score=30.49 Aligned_cols=26 Identities=15% Similarity=0.503 Sum_probs=21.2
Q ss_pred cChHHHHHHHHHHHhCCCeEEEEcCCc
Q 029508 20 GHVSPMMQVAKLLHSKGFHITFVNTEF 46 (192)
Q Consensus 20 GH~~P~l~La~~La~rGh~VT~it~~~ 46 (192)
||+.|++.+ ++|.+.||+|.++....
T Consensus 47 Gh~v~l~~l-~~lq~~G~~~~iligd~ 72 (377)
T TIGR00234 47 GHLVPLLKL-RDFQQAGHEVIVLLGDA 72 (377)
T ss_pred HHHHHHHHH-HHHHHCCCcEEEEEecc
Confidence 999987665 68889999999987654
No 159
>TIGR00655 PurU formyltetrahydrofolate deformylase. This model describes formyltetrahydrofolate deformylases. The enzyme is a homohexamer. Sequences from a related enzyme formyl tetrahydrofolate-specific enzyme, phosphoribosylglycinamide formyltransferase, serve as an outgroup for phylogenetic analysis. Putative members of this family, scoring below the trusted cutoff, include a sequence from Rhodobacter capsulatus that lacks an otherwise conserved C-terminal region.
Probab=41.28 E-value=1.1e+02 Score=25.37 Aligned_cols=45 Identities=18% Similarity=-0.006 Sum_probs=30.6
Q ss_pred HHHHHHHHHhhcCCCCCCCCeEEEEeCCCcchHHHHHHHhCCceEEecC
Q 029508 99 APFLELLGKLNSSADDQVPPVTCVVSDGIMGFGRKAAQMLGILDIQFWT 147 (192)
Q Consensus 99 ~~~~~ll~~l~~~~~~~~~~~d~vI~D~~~~~~~~vA~~lgIP~i~~~t 147 (192)
..++++++...+..- ...+.+||+|-- -+..+|+++|||++.+..
T Consensus 96 ~nl~~l~~~~~~g~l--~~~i~~visn~~--~~~~~A~~~gIp~~~~~~ 140 (280)
T TIGR00655 96 HCLGDLLWRWYSGEL--DAEIALVISNHE--DLRSLVERFGIPFHYIPA 140 (280)
T ss_pred hhHHHHHHHHHcCCC--CcEEEEEEEcCh--hHHHHHHHhCCCEEEcCC
Confidence 567888887653100 124778888853 345579999999998775
No 160
>COG1255 Uncharacterized protein conserved in archaea [Function unknown]
Probab=41.12 E-value=31 Score=24.82 Aligned_cols=22 Identities=27% Similarity=0.462 Sum_probs=18.0
Q ss_pred HHHHHHHHHHhCCCeEEEEcCC
Q 029508 24 PMMQVAKLLHSKGFHITFVNTE 45 (192)
Q Consensus 24 P~l~La~~La~rGh~VT~it~~ 45 (192)
-++.+|++|+++|.+|+.+-..
T Consensus 24 ~~~~VA~~L~e~g~dv~atDI~ 45 (129)
T COG1255 24 FFLDVAKRLAERGFDVLATDIN 45 (129)
T ss_pred hHHHHHHHHHHcCCcEEEEecc
Confidence 4689999999999988876443
No 161
>TIGR03568 NeuC_NnaA UDP-N-acetyl-D-glucosamine 2-epimerase, UDP-hydrolysing. This family of enzymes catalyzes the combined epimerization and UDP-hydrolysis of UDP-N-acetylglucosamine to N-acetylmannosamine. This is in contrast to the related enzyme WecB (TIGR00236) which retains the UDP moiety. NeuC acts in concert with NeuA and NeuB to synthesize CMP-N5-acetyl-neuraminate.
Probab=40.69 E-value=48 Score=28.26 Aligned_cols=35 Identities=11% Similarity=0.205 Sum_probs=24.9
Q ss_pred eEEEEcCCCccChHHHHHHHHHHHhC-CCeEEEEcCC
Q 029508 10 HAVCVPYPAQGHVSPMMQVAKLLHSK-GFHITFVNTE 45 (192)
Q Consensus 10 ~Il~~p~p~~GH~~P~l~La~~La~r-Gh~VT~it~~ 45 (192)
+|+++. ..+.-+.=|..+.++|.++ +.++.++.|-
T Consensus 2 ki~~v~-GtRpe~iklapv~~~l~~~~~~~~~lv~tG 37 (365)
T TIGR03568 2 KICVVT-GTRADYGLLRPLLKALQDDPDLELQLIVTG 37 (365)
T ss_pred eEEEEE-ecChhHHHHHHHHHHHhcCCCCcEEEEEeC
Confidence 455554 4567777788899999874 7887777654
No 162
>TIGR02113 coaC_strep phosphopantothenoylcysteine decarboxylase, streptococcal. In most bacteria, a single bifunctional protein catalyses phosphopantothenoylcysteine decarboxylase and phosphopantothenate--cysteine ligase activities, sequential steps in coenzyme A biosynthesis (see TIGR00521). These activities reside in separate proteins encoded by tandem genes in some bacterial lineages. This model describes proteins from the genera Streptococcus and Enterococcus homologous to the N-terminal region of TIGR00521, corresponding to phosphopantothenoylcysteine decarboxylase activity.
Probab=40.65 E-value=38 Score=25.94 Aligned_cols=34 Identities=12% Similarity=0.148 Sum_probs=26.2
Q ss_pred CccChHHHHHHHHHHHhCCCeEEEEcCCchhhhh
Q 029508 18 AQGHVSPMMQVAKLLHSKGFHITFVNTEFNHRRL 51 (192)
Q Consensus 18 ~~GH~~P~l~La~~La~rGh~VT~it~~~~~~~~ 51 (192)
|.+...-...+.+.|.++|++|.++.++...+.+
T Consensus 9 Gs~~a~~~~~ll~~L~~~g~~V~vi~T~~A~~fi 42 (177)
T TIGR02113 9 GSIAAYKAADLTSQLTKLGYDVTVLMTQAATQFI 42 (177)
T ss_pred CHHHHHHHHHHHHHHHHCCCEEEEEEChHHHhhc
Confidence 4445556679999999999999999988765443
No 163
>PF03853 YjeF_N: YjeF-related protein N-terminus; InterPro: IPR004443 The YjeF N-terminal domains occur either as single proteins or fusions with other domains and are commonly associated with enzymes. In bacteria and archaea, YjeF N-terminal domains are often fused to a YjeF C-terminal domain with high structural homology to the members of a ribokinase-like superfamily (see PDOC00806 from PROSITEDOC)and/or belong to operons that encode enzymes of diverse functions: pyridoxal phosphate biosynthetic protein PdxJ; phosphopanteine-protein transferase; ATP/GTP hydrolase; and pyruvate-formate lyase 1-activating enzyme. In plants, the YjeF N-terminal domain is fused to a C-terminal putative pyridoxamine 5'-phosphate oxidase. In eukaryotes, proteins that consist of (Sm)-FDF-YjeF N-terminal domains may be involved in RNA processing [, ]. The YjeF N-terminal domains represent a novel version of the Rossmann fold, one of the most common protein folds in nature observed in numerous enzyme families, that has acquired a set of catalytic residues and structural features that distinguish them from the conventional dehydrogenases. The YjeF N-terminal domain is comprised of a three-layer alpha-beta-alpha sandwich with a central beta-sheet surrounded by helices. The conservation of the acidic residues in the predicted active site of the YjeF N-terminal domains is reminiscent of the presence of such residues in the active sites of diverse hydrolases [, ].; PDB: 3K5W_A 2O8N_A 2DG2_F 3RNO_A 1JZT_B 3D3K_A 3D3J_A 3RSG_A 3RT9_A 3RRF_A ....
Probab=40.60 E-value=33 Score=25.88 Aligned_cols=35 Identities=14% Similarity=0.235 Sum_probs=24.9
Q ss_pred CceEEEEcCCCccCh-HHHHHHHHHHHhCCCeEEEEcC
Q 029508 8 KAHAVCVPYPAQGHV-SPMMQVAKLLHSKGFHITFVNT 44 (192)
Q Consensus 8 ~~~Il~~p~p~~GH~-~P~l~La~~La~rGh~VT~it~ 44 (192)
..+|+++..++ += -=-+.+||+|+++|++|+++..
T Consensus 25 ~~~v~il~G~G--nNGgDgl~~AR~L~~~G~~V~v~~~ 60 (169)
T PF03853_consen 25 GPRVLILCGPG--NNGGDGLVAARHLANRGYNVTVYLV 60 (169)
T ss_dssp T-EEEEEE-SS--HHHHHHHHHHHHHHHTTCEEEEEEE
T ss_pred CCeEEEEECCC--CChHHHHHHHHHHHHCCCeEEEEEE
Confidence 56888888554 32 2267889999999999999543
No 164
>TIGR00421 ubiX_pad polyprenyl P-hydroxybenzoate and phenylacrylic acid decarboxylases. In E.coli, the protein UbiX (3-octaprenyl-4-hydroxybenzoate carboxy-lyase) has been shown to be involved in the third step of ubiquinone biosynthesis. It catalyzes the reaction [3-octaprenyl-4-hydroxybenzoate = 2-octaprenylphenol + CO2]. The knockout of the homologous protein in yeast confers sensitivity to phenylacrylic acid. Members are not restricted to ubiquinone-synthesizing species. This family represents a distinct clade within the flavoprotein family of Pfam model pfam02441.
Probab=40.56 E-value=39 Score=25.98 Aligned_cols=27 Identities=11% Similarity=0.397 Sum_probs=23.3
Q ss_pred HHHHHHHHHhCCCeEEEEcCCchhhhh
Q 029508 25 MMQVAKLLHSKGFHITFVNTEFNHRRL 51 (192)
Q Consensus 25 ~l~La~~La~rGh~VT~it~~~~~~~~ 51 (192)
..+|+++|.++|++|.++.|+...+.+
T Consensus 15 a~~lir~L~~~g~~V~vv~T~~A~~fv 41 (181)
T TIGR00421 15 GIRLLEVLKEAGVEVHLVISDWAKETI 41 (181)
T ss_pred HHHHHHHHHHCCCEEEEEECccHHHHH
Confidence 478999999999999999999876654
No 165
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=40.53 E-value=47 Score=25.72 Aligned_cols=39 Identities=15% Similarity=0.232 Sum_probs=32.3
Q ss_pred eEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEcCCchh
Q 029508 10 HAVCVPYPAQGHVSPMMQVAKLLHSKGFHITFVNTEFNH 48 (192)
Q Consensus 10 ~Il~~p~p~~GH~~P~l~La~~La~rGh~VT~it~~~~~ 48 (192)
-|+++-..|.|=-.-...||.++..+|.+|.+++.+.++
T Consensus 3 vi~lvGptGvGKTTt~aKLAa~~~~~~~~v~lis~D~~R 41 (196)
T PF00448_consen 3 VIALVGPTGVGKTTTIAKLAARLKLKGKKVALISADTYR 41 (196)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEESTSS
T ss_pred EEEEECCCCCchHhHHHHHHHHHhhccccceeecCCCCC
Confidence 356777788999999999999999999999999988665
No 166
>PRK06719 precorrin-2 dehydrogenase; Validated
Probab=40.19 E-value=97 Score=23.06 Aligned_cols=32 Identities=25% Similarity=0.264 Sum_probs=23.7
Q ss_pred ceEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEcCC
Q 029508 9 AHAVCVPYPAQGHVSPMMQVAKLLHSKGFHITFVNTE 45 (192)
Q Consensus 9 ~~Il~~p~p~~GH~~P~l~La~~La~rGh~VT~it~~ 45 (192)
.+|+++- .|. .....++.|.+.|++||++.+.
T Consensus 14 ~~vlVvG---GG~--va~rka~~Ll~~ga~V~VIsp~ 45 (157)
T PRK06719 14 KVVVIIG---GGK--IAYRKASGLKDTGAFVTVVSPE 45 (157)
T ss_pred CEEEEEC---CCH--HHHHHHHHHHhCCCEEEEEcCc
Confidence 4666664 343 3478899999999999999644
No 167
>PF02374 ArsA_ATPase: Anion-transporting ATPase; PDB: 2WOO_A 3IBG_B 3SJA_A 3H84_B 3SJD_A 3ZS9_A 3A37_A 2WOJ_A 3SJC_B 3A36_B ....
Probab=40.16 E-value=47 Score=27.73 Aligned_cols=40 Identities=18% Similarity=0.167 Sum_probs=31.0
Q ss_pred eEEEEcC-CCccChHHHHHHHHHHHhCCCeEEEEcCCchhh
Q 029508 10 HAVCVPY-PAQGHVSPMMQVAKLLHSKGFHITFVNTEFNHR 49 (192)
Q Consensus 10 ~Il~~p~-p~~GH~~P~l~La~~La~rGh~VT~it~~~~~~ 49 (192)
|+++|.. .|.|=-.-...+|.++|++|++|-+++++..+.
T Consensus 2 r~~~~~GKGGVGKTT~aaA~A~~~A~~G~rtLlvS~Dpa~~ 42 (305)
T PF02374_consen 2 RILFFGGKGGVGKTTVAAALALALARRGKRTLLVSTDPAHS 42 (305)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHHHHTTS-EEEEESSTTTH
T ss_pred eEEEEecCCCCCcHHHHHHHHHHHhhCCCCeeEeecCCCcc
Confidence 4555555 566888888899999999999999999887654
No 168
>COG0299 PurN Folate-dependent phosphoribosylglycinamide formyltransferase PurN [Nucleotide transport and metabolism]
Probab=39.51 E-value=93 Score=24.48 Aligned_cols=33 Identities=18% Similarity=0.201 Sum_probs=28.1
Q ss_pred CeEEEEeCCCcchHHHHHHHhCCceEEecCCch
Q 029508 118 PVTCVVSDGIMGFGRKAAQMLGILDIQFWTASA 150 (192)
Q Consensus 118 ~~d~vI~D~~~~~~~~vA~~lgIP~i~~~t~~a 150 (192)
++.+||+|----.+..-|++.|||.+++..-..
T Consensus 29 ~i~~Visd~~~A~~lerA~~~gIpt~~~~~k~~ 61 (200)
T COG0299 29 EIVAVISDKADAYALERAAKAGIPTVVLDRKEF 61 (200)
T ss_pred EEEEEEeCCCCCHHHHHHHHcCCCEEEeccccC
Confidence 688999998777789999999999998877554
No 169
>PF07015 VirC1: VirC1 protein; InterPro: IPR009744 This family consists of several bacterial VirC1 proteins. In Agrobacterium tumefaciens, a cis-active 24-base-pair sequence adjacent to the right border of the T-DNA, called overdrive, stimulates tumour formation by increasing the level of T-DNA processing. It is thought that the virC operon, which enhances T-DNA processing probably, does so because the VirC1 protein interacts with overdrive. It has now been shown that the virC1 gene product binds to overdrive but not to the right border of T-DNA [].
Probab=39.35 E-value=83 Score=25.33 Aligned_cols=39 Identities=15% Similarity=0.310 Sum_probs=32.5
Q ss_pred EEEEcC-CCccChHHHHHHHHHHHhCCCeEEEEcCCchhh
Q 029508 11 AVCVPY-PAQGHVSPMMQVAKLLHSKGFHITFVNTEFNHR 49 (192)
Q Consensus 11 Il~~p~-p~~GH~~P~l~La~~La~rGh~VT~it~~~~~~ 49 (192)
|.+... .|.|=-.-.+.||.+|+++|-.|+++=.+.++.
T Consensus 4 Itf~s~KGGaGKTT~~~~LAs~la~~G~~V~lIDaDpn~p 43 (231)
T PF07015_consen 4 ITFASSKGGAGKTTAAMALASELAARGARVALIDADPNQP 43 (231)
T ss_pred EEEecCCCCCcHHHHHHHHHHHHHHCCCeEEEEeCCCCCc
Confidence 444444 677888999999999999999999999887765
No 170
>PF02350 Epimerase_2: UDP-N-acetylglucosamine 2-epimerase; InterPro: IPR003331 UDP-N-acetylglucosamine 2-epimerase 5.1.3.14 from EC catalyses the production of UDP-ManNAc from UDP-GlcNAc. Some of the enzymes is this family are bifunctional. In microorganisms the epimerase is involved in in the synthesis of the capsule precursor UDP-ManNAcA [, ]. The protein from rat liver displays both epimerase and kinase activity [].; GO: 0008761 UDP-N-acetylglucosamine 2-epimerase activity, 0006047 UDP-N-acetylglucosamine metabolic process, 0009103 lipopolysaccharide biosynthetic process; PDB: 1V4V_B 3BEO_B 3DZC_B 3OT5_B 1O6C_B 1VGV_D 1F6D_C.
Probab=39.21 E-value=38 Score=28.74 Aligned_cols=41 Identities=17% Similarity=0.065 Sum_probs=26.3
Q ss_pred HHHHHHHHHhhcCCCCCCCCeEEEEe--CCCcc-hHHHHHHHhCCceEEecCC
Q 029508 99 APFLELLGKLNSSADDQVPPVTCVVS--DGIMG-FGRKAAQMLGILDIQFWTA 148 (192)
Q Consensus 99 ~~~~~ll~~l~~~~~~~~~~~d~vI~--D~~~~-~~~~vA~~lgIP~i~~~t~ 148 (192)
..+.+.+++. +||+||. |-+.. .+...|..++||++.+...
T Consensus 57 ~~~~~~~~~~---------~Pd~Vlv~GD~~~~la~alaA~~~~ipv~HieaG 100 (346)
T PF02350_consen 57 IELADVLERE---------KPDAVLVLGDRNEALAAALAAFYLNIPVAHIEAG 100 (346)
T ss_dssp HHHHHHHHHH---------T-SEEEEETTSHHHHHHHHHHHHTT-EEEEES--
T ss_pred HHHHHHHHhc---------CCCEEEEEcCCchHHHHHHHHHHhCCCEEEecCC
Confidence 3455666653 5777766 77664 4568889999999998887
No 171
>PRK09444 pntB pyridine nucleotide transhydrogenase; Provisional
Probab=38.90 E-value=54 Score=29.11 Aligned_cols=36 Identities=17% Similarity=0.396 Sum_probs=28.9
Q ss_pred ceEEEEcCCCccC-----hHHHHHHHHHHHhCCCeEEEEcCCc
Q 029508 9 AHAVCVPYPAQGH-----VSPMMQVAKLLHSKGFHITFVNTEF 46 (192)
Q Consensus 9 ~~Il~~p~p~~GH-----~~P~l~La~~La~rGh~VT~it~~~ 46 (192)
.+|+++| |+|= .....+|++.|.+||.+|.|.+.+-
T Consensus 307 ~~ViIVP--GYGmAVAqAQh~v~el~~~L~~~Gv~V~faIHPV 347 (462)
T PRK09444 307 HSVIITP--GYGMAVAQAQYPVAEITEKLRARGINVRFGIHPV 347 (462)
T ss_pred CcEEEEC--ChHHHHHHHHHHHHHHHHHHHHCCCeEEEEeccc
Confidence 5788887 4542 2678999999999999999988764
No 172
>PLN00016 RNA-binding protein; Provisional
Probab=38.74 E-value=45 Score=28.28 Aligned_cols=37 Identities=19% Similarity=0.199 Sum_probs=25.2
Q ss_pred CceEEEEcC--CCccChHHHHHHHHHHHhCCCeEEEEcCCc
Q 029508 8 KAHAVCVPY--PAQGHVSPMMQVAKLLHSKGFHITFVNTEF 46 (192)
Q Consensus 8 ~~~Il~~p~--p~~GH~~P~l~La~~La~rGh~VT~it~~~ 46 (192)
+.+|+++.. .+.|.+ -..|++.|+++||+|+.++-..
T Consensus 52 ~~~VLVt~~~~GatG~i--G~~lv~~L~~~G~~V~~l~R~~ 90 (378)
T PLN00016 52 KKKVLIVNTNSGGHAFI--GFYLAKELVKAGHEVTLFTRGK 90 (378)
T ss_pred cceEEEEeccCCCceeE--hHHHHHHHHHCCCEEEEEecCC
Confidence 456777611 233433 4578899999999999987543
No 173
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=38.73 E-value=85 Score=25.69 Aligned_cols=39 Identities=13% Similarity=0.181 Sum_probs=33.2
Q ss_pred ceEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEcCCch
Q 029508 9 AHAVCVPYPAQGHVSPMMQVAKLLHSKGFHITFVNTEFN 47 (192)
Q Consensus 9 ~~Il~~p~p~~GH~~P~l~La~~La~rGh~VT~it~~~~ 47 (192)
.-|+++..+|.|=-.-...||..|+++|.+|.++..+.+
T Consensus 73 ~vi~l~G~~G~GKTTt~akLA~~l~~~g~~V~li~~D~~ 111 (272)
T TIGR00064 73 NVILFVGVNGVGKTTTIAKLANKLKKQGKSVLLAAGDTF 111 (272)
T ss_pred eEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeCCCC
Confidence 345577778889999999999999999999999998764
No 174
>PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B ....
Probab=38.62 E-value=33 Score=25.41 Aligned_cols=23 Identities=22% Similarity=0.174 Sum_probs=19.3
Q ss_pred HHHHHHHHHhCCCeEEEEcCCch
Q 029508 25 MMQVAKLLHSKGFHITFVNTEFN 47 (192)
Q Consensus 25 ~l~La~~La~rGh~VT~it~~~~ 47 (192)
-..+++.|.++||+|+.++-...
T Consensus 11 G~~l~~~L~~~~~~V~~~~R~~~ 33 (183)
T PF13460_consen 11 GRALAKQLLRRGHEVTALVRSPS 33 (183)
T ss_dssp HHHHHHHHHHTTSEEEEEESSGG
T ss_pred HHHHHHHHHHCCCEEEEEecCch
Confidence 45699999999999999986644
No 175
>PRK14089 ipid-A-disaccharide synthase; Provisional
Probab=38.62 E-value=70 Score=27.28 Aligned_cols=37 Identities=11% Similarity=-0.135 Sum_probs=24.1
Q ss_pred CCeEEEEe-CC--CcchHHHHHHHh--CCceEEecCCchHHH
Q 029508 117 PPVTCVVS-DG--IMGFGRKAAQML--GILDIQFWTASACGM 153 (192)
Q Consensus 117 ~~~d~vI~-D~--~~~~~~~vA~~l--gIP~i~~~t~~a~~~ 153 (192)
.+||++|. |. |......-+++. |||++.|.+-....|
T Consensus 75 ~~pd~~i~iD~p~Fnl~lak~~k~~~~~i~viyyi~PqvWAW 116 (347)
T PRK14089 75 KQADKVLLMDSSSFNIPLAKKIKKAYPKKEIIYYILPQVWAW 116 (347)
T ss_pred cCCCEEEEeCCCCCCHHHHHHHHhcCCCCCEEEEECccceee
Confidence 36887776 86 344455566777 799988766554433
No 176
>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
Probab=38.26 E-value=31 Score=27.42 Aligned_cols=24 Identities=17% Similarity=0.336 Sum_probs=19.9
Q ss_pred HHHHHHHHHhCCCeEEEEcCCchh
Q 029508 25 MMQVAKLLHSKGFHITFVNTEFNH 48 (192)
Q Consensus 25 ~l~La~~La~rGh~VT~it~~~~~ 48 (192)
-..+|+.|.++||+|+.+-.....
T Consensus 12 G~~va~~L~~~g~~Vv~Id~d~~~ 35 (225)
T COG0569 12 GRSVARELSEEGHNVVLIDRDEER 35 (225)
T ss_pred HHHHHHHHHhCCCceEEEEcCHHH
Confidence 467999999999999999776533
No 177
>PF09001 DUF1890: Domain of unknown function (DUF1890); InterPro: IPR012033 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. The structure of the Methanothermobacter thermautotrophicus (Methanobacterium thermoformicicum) protein has been determined but no evidence as to the function is available yet.; PDB: 1KJN_B.
Probab=38.14 E-value=27 Score=25.79 Aligned_cols=28 Identities=18% Similarity=0.300 Sum_probs=23.0
Q ss_pred HHHHHHHHHHhCCCeEEEEcCCchhhhh
Q 029508 24 PMMQVAKLLHSKGFHITFVNTEFNHRRL 51 (192)
Q Consensus 24 P~l~La~~La~rGh~VT~it~~~~~~~~ 51 (192)
-.+-++..|.++||+|++..++...+.+
T Consensus 15 ~alYl~~~Lk~~G~~v~Va~npAA~kLl 42 (139)
T PF09001_consen 15 SALYLSYKLKKKGFEVVVAGNPAALKLL 42 (139)
T ss_dssp HHHHHHHHHHCTTEEEEEEE-HHHHHHH
T ss_pred HHHHHHHHHHhcCCeEEEecCHHHHhHh
Confidence 4788999999999999999998766554
No 178
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=37.99 E-value=89 Score=23.09 Aligned_cols=38 Identities=18% Similarity=0.266 Sum_probs=32.7
Q ss_pred EEEEcCCCccChHHHHHHHHHHHhCCCeEEEEcCCchh
Q 029508 11 AVCVPYPAQGHVSPMMQVAKLLHSKGFHITFVNTEFNH 48 (192)
Q Consensus 11 Il~~p~p~~GH~~P~l~La~~La~rGh~VT~it~~~~~ 48 (192)
+++.-.||.|=-.....+++.++++|.+|.++..+...
T Consensus 3 ~~~~G~~G~GKTt~~~~la~~~~~~g~~v~~i~~D~~~ 40 (173)
T cd03115 3 ILLVGLQGVGKTTTAAKLALYLKKKGKKVLLVAADTYR 40 (173)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEEcCCCC
Confidence 45677788999999999999999999999999887654
No 179
>PLN02650 dihydroflavonol-4-reductase
Probab=37.95 E-value=64 Score=26.90 Aligned_cols=34 Identities=15% Similarity=0.202 Sum_probs=23.3
Q ss_pred CCceEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEcC
Q 029508 7 RKAHAVCVPYPAQGHVSPMMQVAKLLHSKGFHITFVNT 44 (192)
Q Consensus 7 ~~~~Il~~p~p~~GH~~P~l~La~~La~rGh~VT~it~ 44 (192)
++.+|++.. +.|.+ -.+|+++|+++|++|+.+.-
T Consensus 4 ~~k~iLVTG--atGfI--Gs~l~~~L~~~G~~V~~~~r 37 (351)
T PLN02650 4 QKETVCVTG--ASGFI--GSWLVMRLLERGYTVRATVR 37 (351)
T ss_pred CCCEEEEeC--CcHHH--HHHHHHHHHHCCCEEEEEEc
Confidence 344666655 34443 45688999999999987653
No 180
>PLN02778 3,5-epimerase/4-reductase
Probab=37.87 E-value=61 Score=26.60 Aligned_cols=35 Identities=14% Similarity=0.220 Sum_probs=23.5
Q ss_pred CCCCceEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEc
Q 029508 5 GARKAHAVCVPYPAQGHVSPMMQVAKLLHSKGFHITFVN 43 (192)
Q Consensus 5 ~~~~~~Il~~p~p~~GH~~P~l~La~~La~rGh~VT~it 43 (192)
++.+.+|++.-.- |.+ -..|+++|.++||+|++..
T Consensus 6 ~~~~~kiLVtG~t--Gfi--G~~l~~~L~~~g~~V~~~~ 40 (298)
T PLN02778 6 GSATLKFLIYGKT--GWI--GGLLGKLCQEQGIDFHYGS 40 (298)
T ss_pred CCCCCeEEEECCC--CHH--HHHHHHHHHhCCCEEEEec
Confidence 3335677776643 333 2368899999999998653
No 181
>TIGR00640 acid_CoA_mut_C methylmalonyl-CoA mutase C-terminal domain. Methylmalonyl-CoA mutase (EC 5.4.99.2) catalyzes a reversible isomerization between L-methylmalonyl-CoA and succinyl-CoA. The enzyme uses an adenosylcobalamin cofactor. It may be a homodimer, as in mitochondrion, or a heterodimer with partially homologous beta chain that does not bind the adenosylcobalamin cofactor, as in Propionibacterium freudenreichii. The most similar archaeal sequences are separate chains, such as AF2215 and AF2219 of Archaeoglobus fulgidus, that correspond roughly to the first 500 and last 130 residues, respectively of known methylmalonyl-CoA mutases. This model describes the C-terminal domain subfamily. In a neighbor-joining tree (methylaspartate mutase S chain as the outgroup), AF2219 branches with a coenzyme B12-dependent enzyme known not to be 5.4.99.2.
Probab=37.80 E-value=48 Score=24.05 Aligned_cols=38 Identities=29% Similarity=0.280 Sum_probs=31.8
Q ss_pred CCceEEEEcCCCccChHHHHHHHHHHHhCCC-eEEEEcC
Q 029508 7 RKAHAVCVPYPAQGHVSPMMQVAKLLHSKGF-HITFVNT 44 (192)
Q Consensus 7 ~~~~Il~~p~p~~GH~~P~l~La~~La~rGh-~VT~it~ 44 (192)
...+++.++....+|.--+-+++++|.++|. ++.++..
T Consensus 52 ~~adii~iSsl~~~~~~~~~~~~~~L~~~g~~~i~vivG 90 (132)
T TIGR00640 52 ADVHVVGVSSLAGGHLTLVPALRKELDKLGRPDILVVVG 90 (132)
T ss_pred cCCCEEEEcCchhhhHHHHHHHHHHHHhcCCCCCEEEEe
Confidence 4678999998888999999999999999987 5666655
No 182
>PRK13982 bifunctional SbtC-like/phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Provisional
Probab=37.69 E-value=33 Score=30.71 Aligned_cols=38 Identities=13% Similarity=0.319 Sum_probs=29.5
Q ss_pred ceEEEEcCCCccChHHH------------HHHHHHHHhCCCeEEEEcCCc
Q 029508 9 AHAVCVPYPAQGHVSPM------------MQVAKLLHSKGFHITFVNTEF 46 (192)
Q Consensus 9 ~~Il~~p~p~~GH~~P~------------l~La~~La~rGh~VT~it~~~ 46 (192)
.||++...|.+--+.|. ..||++++.||++||+++++.
T Consensus 257 kkvLITaGpT~E~IDpVR~ItN~SSGkmG~alA~aa~~~GA~VtlI~Gp~ 306 (475)
T PRK13982 257 RRVLITAGPTHEPIDPVRYIANRSSGKQGFAIAAAAAAAGAEVTLISGPV 306 (475)
T ss_pred CEEEEecCCccccCCcceeeCCCCchHHHHHHHHHHHHCCCcEEEEeCCc
Confidence 47777777776666554 578899999999999998764
No 183
>PF08660 Alg14: Oligosaccharide biosynthesis protein Alg14 like; InterPro: IPR013969 Alg14 is involved dolichol-linked oligosaccharide biosynthesis and anchors the catalytic subunit Alg13 to the ER membrane [].
Probab=37.50 E-value=1.4e+02 Score=22.56 Aligned_cols=32 Identities=22% Similarity=0.092 Sum_probs=23.2
Q ss_pred CCeEEEEeCCCcch--HHHHHHHh------CCceEEecCC
Q 029508 117 PPVTCVVSDGIMGF--GRKAAQML------GILDIQFWTA 148 (192)
Q Consensus 117 ~~~d~vI~D~~~~~--~~~vA~~l------gIP~i~~~t~ 148 (192)
.+||+||+-.-..+ ...+|.-+ |.+.|..-+.
T Consensus 91 ~rPdvii~nGpg~~vp~~~~~~l~~~~~~~~~kiIyIES~ 130 (170)
T PF08660_consen 91 ERPDVIISNGPGTCVPVCLAAKLLRLLGLRGSKIIYIESF 130 (170)
T ss_pred hCCCEEEEcCCceeeHHHHHHHHHHHhhccCCcEEEEEee
Confidence 47999999865544 34677777 8998876554
No 184
>COG1763 MobB Molybdopterin-guanine dinucleotide biosynthesis protein [Coenzyme metabolism]
Probab=37.43 E-value=80 Score=23.87 Aligned_cols=34 Identities=18% Similarity=0.408 Sum_probs=28.4
Q ss_pred EEEcCCCccChHHHHHHHHHHHhCCCeEEEEcCC
Q 029508 12 VCVPYPAQGHVSPMMQVAKLLHSKGFHITFVNTE 45 (192)
Q Consensus 12 l~~p~p~~GH~~P~l~La~~La~rGh~VT~it~~ 45 (192)
.++-+-..|=-.-+.+|.++|.+||++|..+-..
T Consensus 6 ~ivG~k~SGKTTLie~lv~~L~~~G~rVa~iKH~ 39 (161)
T COG1763 6 GIVGYKNSGKTTLIEKLVRKLKARGYRVATVKHA 39 (161)
T ss_pred EEEecCCCChhhHHHHHHHHHHhCCcEEEEEEec
Confidence 3666677788888999999999999999988544
No 185
>PF02684 LpxB: Lipid-A-disaccharide synthetase; InterPro: IPR003835 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. These enzymes belong to the glycosyltransferase family 19 GT19 from CAZY. Lipid-A-disaccharide synthetase 2.4.1.182 from EC is involved with acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase 2.3.1.129 from EC and tetraacyldisaccharide 4'-kinase 2.7.1.130 from EC in the biosynthesis of the phosphorylated glycolipid, lipid A, in the outer membrane of Escherichia coli and other bacteria. These enzymes catalyse the first disaccharide step in the synthesis of lipid-A-disaccharide.; GO: 0008915 lipid-A-disaccharide synthase activity, 0009245 lipid A biosynthetic process
Probab=37.33 E-value=74 Score=27.49 Aligned_cols=31 Identities=19% Similarity=0.007 Sum_probs=19.8
Q ss_pred CCeEEEEe-CC--CcchHHHHHHHhCCc--eEEecC
Q 029508 117 PPVTCVVS-DG--IMGFGRKAAQMLGIL--DIQFWT 147 (192)
Q Consensus 117 ~~~d~vI~-D~--~~~~~~~vA~~lgIP--~i~~~t 147 (192)
.+||++|. |+ |.......+++.|++ ++.|.+
T Consensus 81 ~~pd~vIlID~pgFNlrlak~lk~~~~~~~viyYI~ 116 (373)
T PF02684_consen 81 EKPDVVILIDYPGFNLRLAKKLKKRGIPIKVIYYIS 116 (373)
T ss_pred cCCCEEEEeCCCCccHHHHHHHHHhCCCceEEEEEC
Confidence 57887765 86 334445667788888 554444
No 186
>PF10087 DUF2325: Uncharacterized protein conserved in bacteria (DUF2325); InterPro: IPR016772 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=37.22 E-value=81 Score=21.22 Aligned_cols=36 Identities=22% Similarity=0.207 Sum_probs=25.8
Q ss_pred CeEEE--EeCCCcc---h-HHHHHHHhCCceEEecCCchHHH
Q 029508 118 PVTCV--VSDGIMG---F-GRKAAQMLGILDIQFWTASACGM 153 (192)
Q Consensus 118 ~~d~v--I~D~~~~---~-~~~vA~~lgIP~i~~~t~~a~~~ 153 (192)
+.|+| +.|+... | +...|++.|+|++.....+...+
T Consensus 48 ~aD~VIv~t~~vsH~~~~~vk~~akk~~ip~~~~~~~~~~~l 89 (97)
T PF10087_consen 48 KADLVIVFTDYVSHNAMWKVKKAAKKYGIPIIYSRSRGVSSL 89 (97)
T ss_pred CCCEEEEEeCCcChHHHHHHHHHHHHcCCcEEEECCCCHHHH
Confidence 45666 4577542 3 35889999999999997776644
No 187
>cd01981 Pchlide_reductase_B Pchlide_reductase_B: B protein of the NB protein complex of Protochlorophyllide (Pchlide)_reductase. Pchlide reductase catalyzes the reductive formation of chlorophyllide (chlide) from protochlorophyllide (pchlide) during biosynthesis of chlorophylls and bacteriochlorophylls. This group contains both the light-independent Pchlide reductase (DPOR) and light-dependent Pchlide reductase (LPOR). Angiosperms contain only LPOR, cyanobacteria, algae and gymnosperms contain both DPOR and LPOR, primitive anoxygenic photosynthetic bacteria contain only DPOR. NB is structurally similar to the FeMo protein of nitrogenase, forming an N2B2 heterotetramer. N and B are homologous to the FeMo alpha and beta subunits respectively. Also in common with nitrogenase in vitro DPOR activity requires ATP hydrolysis and dithoionite or ferredoxin as electron donor. The NB protein complex may serve as a catalytic site for Pchlide reduction similar to MoFe for nitrogen reduction.
Probab=37.16 E-value=58 Score=28.38 Aligned_cols=27 Identities=11% Similarity=0.032 Sum_probs=21.7
Q ss_pred CCeEEEEeCCCcchHHHHHHHhCCceEEec
Q 029508 117 PPVTCVVSDGIMGFGRKAAQMLGILDIQFW 146 (192)
Q Consensus 117 ~~~d~vI~D~~~~~~~~vA~~lgIP~i~~~ 146 (192)
.+||++|.+. +...+|+++|+|.+.+.
T Consensus 369 ~~pdliig~~---~~~~~a~~~gip~~~~~ 395 (430)
T cd01981 369 TEPELIFGTQ---MERHIGKRLDIPCAVIS 395 (430)
T ss_pred hCCCEEEecc---hhhHHHHHcCCCEEEEe
Confidence 4689999887 46678999999998763
No 188
>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1.1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....
Probab=36.96 E-value=87 Score=23.15 Aligned_cols=32 Identities=13% Similarity=0.146 Sum_probs=22.4
Q ss_pred ceEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEcCC
Q 029508 9 AHAVCVPYPAQGHVSPMMQVAKLLHSKGFHITFVNTE 45 (192)
Q Consensus 9 ~~Il~~p~p~~GH~~P~l~La~~La~rGh~VT~it~~ 45 (192)
.+|.++-.. +--..++++|+++||+|+++...
T Consensus 2 ~~Ig~IGlG-----~mG~~~a~~L~~~g~~v~~~d~~ 33 (163)
T PF03446_consen 2 MKIGFIGLG-----NMGSAMARNLAKAGYEVTVYDRS 33 (163)
T ss_dssp BEEEEE--S-----HHHHHHHHHHHHTTTEEEEEESS
T ss_pred CEEEEEchH-----HHHHHHHHHHHhcCCeEEeeccc
Confidence 456666543 33457899999999999998644
No 189
>PRK05920 aromatic acid decarboxylase; Validated
Probab=36.95 E-value=59 Score=25.58 Aligned_cols=43 Identities=9% Similarity=0.093 Sum_probs=31.3
Q ss_pred CceEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEcCCchhhhh
Q 029508 8 KAHAVCVPYPAQGHVSPMMQVAKLLHSKGFHITFVNTEFNHRRL 51 (192)
Q Consensus 8 ~~~Il~~p~p~~GH~~P~l~La~~La~rGh~VT~it~~~~~~~~ 51 (192)
+.||++-- .|.+...=..+++++|.+.|++|.++.+....+.+
T Consensus 3 ~krIllgI-TGsiaa~ka~~lvr~L~~~g~~V~vi~T~~A~~fv 45 (204)
T PRK05920 3 MKRIVLAI-TGASGAIYGVRLLECLLAADYEVHLVISKAAQKVL 45 (204)
T ss_pred CCEEEEEE-eCHHHHHHHHHHHHHHHHCCCEEEEEEChhHHHHH
Confidence 34665443 34444467889999999999999999998765543
No 190
>PF07355 GRDB: Glycine/sarcosine/betaine reductase selenoprotein B (GRDB); InterPro: IPR022787 This entry represents selenoprotein B of glycine reductase, sarcosine reductase, betaine reductase, D-proline reductase, and perhaps others. All members are expected to contain an internal UGA codon, encoding selenocysteine, which may be misinterpreted as a stop codon. ; GO: 0030699 glycine reductase activity, 0050485 oxidoreductase activity, acting on X-H and Y-H to form an X-Y bond, with a disulfide as acceptor, 0055114 oxidation-reduction process, 0030700 glycine reductase complex
Probab=36.90 E-value=69 Score=27.44 Aligned_cols=30 Identities=13% Similarity=0.141 Sum_probs=21.9
Q ss_pred CCeEEEEeCCCcch----------HHHHHHHhCCceEEec
Q 029508 117 PPVTCVVSDGIMGF----------GRKAAQMLGILDIQFW 146 (192)
Q Consensus 117 ~~~d~vI~D~~~~~----------~~~vA~~lgIP~i~~~ 146 (192)
-++|++|+-..+.. +..+.++++||.++-.
T Consensus 79 ~~pD~viaGPaFnagrYG~acg~v~~aV~e~~~IP~vtaM 118 (349)
T PF07355_consen 79 LKPDVVIAGPAFNAGRYGVACGEVAKAVQEKLGIPVVTAM 118 (349)
T ss_pred cCCCEEEEcCCcCCchHHHHHHHHHHHHHHhhCCCEEEEe
Confidence 47999999987642 1246678999998643
No 191
>PRK08229 2-dehydropantoate 2-reductase; Provisional
Probab=36.80 E-value=37 Score=28.29 Aligned_cols=33 Identities=15% Similarity=0.175 Sum_probs=24.6
Q ss_pred ceEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEcCCc
Q 029508 9 AHAVCVPYPAQGHVSPMMQVAKLLHSKGFHITFVNTEF 46 (192)
Q Consensus 9 ~~Il~~p~p~~GH~~P~l~La~~La~rGh~VT~it~~~ 46 (192)
.||.++.....| ..+|..|+++||+|+++.-..
T Consensus 3 mkI~IiG~G~mG-----~~~A~~L~~~G~~V~~~~r~~ 35 (341)
T PRK08229 3 ARICVLGAGSIG-----CYLGGRLAAAGADVTLIGRAR 35 (341)
T ss_pred ceEEEECCCHHH-----HHHHHHHHhcCCcEEEEecHH
Confidence 477777544444 457899999999999997643
No 192
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=36.72 E-value=95 Score=27.46 Aligned_cols=42 Identities=14% Similarity=0.302 Sum_probs=35.4
Q ss_pred CceEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEcCCchhh
Q 029508 8 KAHAVCVPYPAQGHVSPMMQVAKLLHSKGFHITFVNTEFNHR 49 (192)
Q Consensus 8 ~~~Il~~p~p~~GH~~P~l~La~~La~rGh~VT~it~~~~~~ 49 (192)
...|+++..+|.|=-.-...||+.|.++|++|.++..+.+..
T Consensus 95 p~vI~lvG~~GsGKTTtaakLA~~L~~~g~kV~lV~~D~~R~ 136 (437)
T PRK00771 95 PQTIMLVGLQGSGKTTTAAKLARYFKKKGLKVGLVAADTYRP 136 (437)
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEecCCCCCH
Confidence 345668888999999999999999999999999999876543
No 193
>PRK14098 glycogen synthase; Provisional
Probab=36.68 E-value=36 Score=30.28 Aligned_cols=39 Identities=15% Similarity=0.186 Sum_probs=28.9
Q ss_pred CCceEEEEcC-----CCc-cChHHHHHHHHHHHhCCCeEEEEcCC
Q 029508 7 RKAHAVCVPY-----PAQ-GHVSPMMQVAKLLHSKGFHITFVNTE 45 (192)
Q Consensus 7 ~~~~Il~~p~-----p~~-GH~~P~l~La~~La~rGh~VT~it~~ 45 (192)
++.+|+++.. .=. |=-.-+-.|.|+|+++||+|.++.+.
T Consensus 4 ~~~~il~v~~E~~p~~k~Ggl~dv~~~Lp~al~~~g~~v~v~~P~ 48 (489)
T PRK14098 4 RNFKVLYVSGEVSPFVRVSALADFMASFPQALEEEGFEARIMMPK 48 (489)
T ss_pred CCcEEEEEeecchhhcccchHHHHHHHHHHHHHHCCCeEEEEcCC
Confidence 3567776643 222 34467889999999999999999884
No 194
>PRK06222 ferredoxin-NADP(+) reductase subunit alpha; Reviewed
Probab=36.61 E-value=50 Score=26.97 Aligned_cols=38 Identities=26% Similarity=0.446 Sum_probs=29.1
Q ss_pred ceEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEcCCchh
Q 029508 9 AHAVCVPYPAQGHVSPMMQVAKLLHSKGFHITFVNTEFNH 48 (192)
Q Consensus 9 ~~Il~~p~p~~GH~~P~l~La~~La~rGh~VT~it~~~~~ 48 (192)
.+++++. .|.| +.|++.+++.|+++|.+|+++-...+.
T Consensus 99 ~~~llIa-GGiG-iaPl~~l~~~l~~~~~~v~l~~g~r~~ 136 (281)
T PRK06222 99 GTVVCVG-GGVG-IAPVYPIAKALKEAGNKVITIIGARNK 136 (281)
T ss_pred CeEEEEe-CcCc-HHHHHHHHHHHHHCCCeEEEEEecCCH
Confidence 4677666 3445 689999999999999999988765544
No 195
>PF03403 PAF-AH_p_II: Platelet-activating factor acetylhydrolase, isoform II; PDB: 3F98_B 3F97_B 3D59_A 3F96_A 3D5E_B 3F9C_A.
Probab=36.32 E-value=35 Score=29.41 Aligned_cols=36 Identities=17% Similarity=0.206 Sum_probs=25.6
Q ss_pred CceEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEc
Q 029508 8 KAHAVCVPYPAQGHVSPMMQVAKLLHSKGFHITFVN 43 (192)
Q Consensus 8 ~~~Il~~p~p~~GH~~P~l~La~~La~rGh~VT~it 43 (192)
+--+++|.....|+-+-...+|..||++|+-|..+-
T Consensus 99 ~~PvvIFSHGlgg~R~~yS~~~~eLAS~GyVV~aie 134 (379)
T PF03403_consen 99 KFPVVIFSHGLGGSRTSYSAICGELASHGYVVAAIE 134 (379)
T ss_dssp -EEEEEEE--TT--TTTTHHHHHHHHHTT-EEEEE-
T ss_pred CCCEEEEeCCCCcchhhHHHHHHHHHhCCeEEEEec
Confidence 566888888888999999999999999998777664
No 196
>PLN02939 transferase, transferring glycosyl groups
Probab=36.10 E-value=72 Score=31.19 Aligned_cols=38 Identities=21% Similarity=0.288 Sum_probs=29.1
Q ss_pred CceEEEEcC-----CCccCh-HHHHHHHHHHHhCCCeEEEEcCC
Q 029508 8 KAHAVCVPY-----PAQGHV-SPMMQVAKLLHSKGFHITFVNTE 45 (192)
Q Consensus 8 ~~~Il~~p~-----p~~GH~-~P~l~La~~La~rGh~VT~it~~ 45 (192)
..||+++.. .-.|=+ .-.-.|.++|+++||+|.++++.
T Consensus 481 ~mkILfVasE~aP~aKtGGLaDVv~sLPkAL~~~GhdV~VIlP~ 524 (977)
T PLN02939 481 GLHIVHIAAEMAPVAKVGGLADVVSGLGKALQKKGHLVEIVLPK 524 (977)
T ss_pred CCEEEEEEcccccccccccHHHHHHHHHHHHHHcCCeEEEEeCC
Confidence 568887653 333444 55788999999999999999984
No 197
>TIGR00236 wecB UDP-N-acetylglucosamine 2-epimerase. Epimerase activity was also demonstrated in a bifunctional rat enzyme, for which the N-terminal domain appears to be orthologous. The set of proteins found above the suggested cutoff includes E. coli WecB in one of two deeply branched clusters and the rat UDP-N-acetylglucosamine 2-epimerase domain in the other.
Probab=36.09 E-value=70 Score=26.78 Aligned_cols=35 Identities=11% Similarity=0.056 Sum_probs=25.7
Q ss_pred eEEEEcCCCccChHHHHHHHHHHHhC-CCeEEEEcCC
Q 029508 10 HAVCVPYPAQGHVSPMMQVAKLLHSK-GFHITFVNTE 45 (192)
Q Consensus 10 ~Il~~p~p~~GH~~P~l~La~~La~r-Gh~VT~it~~ 45 (192)
+|+++. ..+.++.=+..+.++|.++ +.++.++.|-
T Consensus 2 ~i~~~~-gtr~~~~~~~p~~~~l~~~~~~~~~~~~tg 37 (365)
T TIGR00236 2 KVSIVL-GTRPEAIKMAPLIRALKKYPEIDSYVIVTA 37 (365)
T ss_pred eEEEEE-ecCHHHHHHHHHHHHHhhCCCCCEEEEEeC
Confidence 566555 5678999999999999986 6666665554
No 198
>PF07302 AroM: AroM protein; InterPro: IPR010843 This family consists of several bacterial and archaeal AroM proteins. In Escherichia coli the aroM gene is cotranscribed with aroL []. The function of this family is unknown.
Probab=35.78 E-value=77 Score=25.33 Aligned_cols=46 Identities=17% Similarity=-0.000 Sum_probs=31.2
Q ss_pred HHHHHHHHHhhcCCCCCCCCeEEEEeCCCcc--hHH-HHHHHhCCceEEecCCch
Q 029508 99 APFLELLGKLNSSADDQVPPVTCVVSDGIMG--FGR-KAAQMLGILDIQFWTASA 150 (192)
Q Consensus 99 ~~~~~ll~~l~~~~~~~~~~~d~vI~D~~~~--~~~-~vA~~lgIP~i~~~t~~a 150 (192)
+.+.+..+++.+ .+.|+|+.|++-. ... .+++..|+|++...+.-+
T Consensus 165 ~~l~~Aa~~L~~------~gadlIvLDCmGYt~~~r~~~~~~~g~PVlLsr~lvA 213 (221)
T PF07302_consen 165 EELAAAARELAE------QGADLIVLDCMGYTQEMRDIVQRALGKPVLLSRTLVA 213 (221)
T ss_pred HHHHHHHHHHHh------cCCCEEEEECCCCCHHHHHHHHHHhCCCEEeHHHHHH
Confidence 345555566654 4799999998653 233 678889999987655443
No 199
>COG0300 DltE Short-chain dehydrogenases of various substrate specificities [General function prediction only]
Probab=35.78 E-value=38 Score=27.82 Aligned_cols=34 Identities=18% Similarity=0.340 Sum_probs=24.6
Q ss_pred ceEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEcCC
Q 029508 9 AHAVCVPYPAQGHVSPMMQVAKLLHSKGFHITFVNTE 45 (192)
Q Consensus 9 ~~Il~~p~p~~GH~~P~l~La~~La~rGh~VT~it~~ 45 (192)
.+-++++....| =-.++|+.||+||++|.++.=.
T Consensus 6 ~~~~lITGASsG---IG~~~A~~lA~~g~~liLvaR~ 39 (265)
T COG0300 6 GKTALITGASSG---IGAELAKQLARRGYNLILVARR 39 (265)
T ss_pred CcEEEEECCCch---HHHHHHHHHHHCCCEEEEEeCc
Confidence 344556655444 3578999999999999998643
No 200
>PRK06029 3-octaprenyl-4-hydroxybenzoate carboxy-lyase; Provisional
Probab=35.59 E-value=63 Score=24.97 Aligned_cols=42 Identities=12% Similarity=0.108 Sum_probs=31.0
Q ss_pred ceEEEEcCCCccChHHHHHHHHHHHh-CCCeEEEEcCCchhhhh
Q 029508 9 AHAVCVPYPAQGHVSPMMQVAKLLHS-KGFHITFVNTEFNHRRL 51 (192)
Q Consensus 9 ~~Il~~p~p~~GH~~P~l~La~~La~-rGh~VT~it~~~~~~~~ 51 (192)
.||++--..+.| ..=..+|+++|.+ .|++|.++.|+...+.+
T Consensus 2 k~IllgVTGsia-a~ka~~l~~~L~k~~g~~V~vv~T~~A~~fv 44 (185)
T PRK06029 2 KRLIVGISGASG-AIYGVRLLQVLRDVGEIETHLVISQAARQTL 44 (185)
T ss_pred CEEEEEEECHHH-HHHHHHHHHHHHhhcCCeEEEEECHHHHHHH
Confidence 356555444445 5568899999999 59999999998776554
No 201
>PLN02316 synthase/transferase
Probab=35.53 E-value=37 Score=33.37 Aligned_cols=39 Identities=10% Similarity=0.333 Sum_probs=29.1
Q ss_pred CceEEEEcC---C--CccCh-HHHHHHHHHHHhCCCeEEEEcCCc
Q 029508 8 KAHAVCVPY---P--AQGHV-SPMMQVAKLLHSKGFHITFVNTEF 46 (192)
Q Consensus 8 ~~~Il~~p~---p--~~GH~-~P~l~La~~La~rGh~VT~it~~~ 46 (192)
..||+++.. | -.|=+ .-...|+++|+++||+|.++++.-
T Consensus 587 pM~Il~VSsE~~P~aKvGGLgDVV~sLp~ALa~~Gh~V~VitP~Y 631 (1036)
T PLN02316 587 PMHIVHIAVEMAPIAKVGGLGDVVTSLSRAVQDLNHNVDIILPKY 631 (1036)
T ss_pred CcEEEEEEcccCCCCCcCcHHHHHHHHHHHHHHcCCEEEEEecCC
Confidence 468887653 3 23444 446899999999999999999853
No 202
>PF08026 Antimicrobial_5: Bee antimicrobial peptide; InterPro: IPR012524 This entry represents antimicrobial peptides produced by bees. These peptides have strong antimicrobial and some anti-fungal activity and has homology to abaecin which is the largest proline-rich antimicrobial peptide isolated from European bumblebee Bombus pascuorum [].; GO: 0042381 hemolymph coagulation, 0005576 extracellular region
Probab=35.32 E-value=4.9 Score=22.27 Aligned_cols=25 Identities=24% Similarity=0.442 Sum_probs=16.5
Q ss_pred EEcCCCccChHHHHHHHHHHHhCCC
Q 029508 13 CVPYPAQGHVSPMMQVAKLLHSKGF 37 (192)
Q Consensus 13 ~~p~p~~GH~~P~l~La~~La~rGh 37 (192)
+=+|||+|-+||-.++-.-|-+.||
T Consensus 15 FPTFPGqGP~NPKir~Pyplpn~g~ 39 (39)
T PF08026_consen 15 FPTFPGQGPFNPKIRWPYPLPNPGH 39 (39)
T ss_pred CCcCCCCCCCCccccccccCCCCCC
Confidence 3457899999987766555544443
No 203
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=35.32 E-value=92 Score=27.50 Aligned_cols=40 Identities=18% Similarity=0.238 Sum_probs=34.6
Q ss_pred ceEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEcCCchh
Q 029508 9 AHAVCVPYPAQGHVSPMMQVAKLLHSKGFHITFVNTEFNH 48 (192)
Q Consensus 9 ~~Il~~p~p~~GH~~P~l~La~~La~rGh~VT~it~~~~~ 48 (192)
.-|+++..+|.|=-.-...||..|..+|++|.+++.+.+.
T Consensus 101 ~vi~lvG~~GvGKTTtaaKLA~~l~~~G~kV~lV~~D~~R 140 (429)
T TIGR01425 101 NVIMFVGLQGSGKTTTCTKLAYYYQRKGFKPCLVCADTFR 140 (429)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEcCcccc
Confidence 3456777789999999999999999999999999998755
No 204
>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain. Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.
Probab=35.24 E-value=1.1e+02 Score=19.24 Aligned_cols=32 Identities=16% Similarity=0.256 Sum_probs=25.5
Q ss_pred EEEcCCCccChHHHHHHHHHHHhCCCeEEEEc
Q 029508 12 VCVPYPAQGHVSPMMQVAKLLHSKGFHITFVN 43 (192)
Q Consensus 12 l~~p~p~~GH~~P~l~La~~La~rGh~VT~it 43 (192)
++...+|.|=-.-...+++.|+++|++|.++-
T Consensus 3 ~~~g~~G~Gktt~~~~l~~~l~~~g~~v~~~~ 34 (99)
T cd01983 3 VVTGKGGVGKTTLAANLAAALAKRGKRVLLID 34 (99)
T ss_pred EEECCCCCCHHHHHHHHHHHHHHCCCeEEEEC
Confidence 34445567777788999999999999998876
No 205
>TIGR02700 flavo_MJ0208 archaeoflavoprotein, MJ0208 family. This model describes one of two paralogous families of archaealflavoprotein. The other, described by TIGR02699 and typified by the partially characterized AF1518 of Archaeoglobus fulgidus, is a homodimeric FMN-containing flavoprotein that accepts electrons from ferredoxin and can transfer them to various oxidoreductases. The function of this protein family is unknown.
Probab=35.12 E-value=58 Score=25.99 Aligned_cols=35 Identities=17% Similarity=0.265 Sum_probs=27.6
Q ss_pred CCccCh-HHHHHHHHHHHhC--CCeEEEEcCCchhhhh
Q 029508 17 PAQGHV-SPMMQVAKLLHSK--GFHITFVNTEFNHRRL 51 (192)
Q Consensus 17 p~~GH~-~P~l~La~~La~r--Gh~VT~it~~~~~~~~ 51 (192)
.|.|+. .=..+|++.|.++ |++|.++.+....+.+
T Consensus 7 tGs~~~~~~~~~l~~~L~~~~~g~~V~vv~T~~a~~~i 44 (234)
T TIGR02700 7 TGAGHLLVESFQVMKELKREIEELRVSTFVSRAGEEVV 44 (234)
T ss_pred eCccHhHHHHHHHHHHHHhhcCCCeEEEEEChhHHhHH
Confidence 455566 4688999999999 9999999988765544
No 206
>TIGR01007 eps_fam capsular exopolysaccharide family. This model describes the capsular exopolysaccharide proteins in bacteria. The exopolysaccharide gene cluster consists of several genes which encode a number of proteins which regulate the exoploysaccharide biosynthesis(EPS). Atleast 13 genes espA to espM in streptococcus species seem to direct the EPS proteins and all of which share high homology. Functional roles were characterized by gene disruption experiments which resulted in exopolysaccharide-deficient phenotypes.
Probab=35.02 E-value=1.2e+02 Score=23.20 Aligned_cols=38 Identities=11% Similarity=0.371 Sum_probs=28.5
Q ss_pred ceEEEEcC--CCccChHHHHHHHHHHHhCCCeEEEEcCCc
Q 029508 9 AHAVCVPY--PAQGHVSPMMQVAKLLHSKGFHITFVNTEF 46 (192)
Q Consensus 9 ~~Il~~p~--p~~GH~~P~l~La~~La~rGh~VT~it~~~ 46 (192)
.+++.+.. ++.|=-.-...||+.|+++|++|.++-.+.
T Consensus 17 ~kvI~v~s~kgG~GKTt~a~~LA~~la~~G~rVllID~D~ 56 (204)
T TIGR01007 17 IKVLLITSVKPGEGKSTTSANIAVAFAQAGYKTLLIDGDM 56 (204)
T ss_pred CcEEEEecCCCCCCHHHHHHHHHHHHHhCCCeEEEEeCCC
Confidence 44444433 566777889999999999999999886554
No 207
>cd01421 IMPCH Inosine monophosphate cyclohydrolase domain. This is the N-terminal domain in the purine biosynthesis pathway protein ATIC (purH). The bifunctional ATIC protein contains a C-terminal ATIC formylase domain that formylates 5-aminoimidazole-4-carboxamide-ribonucleotide. The IMPCH domain then converts the formyl-5-aminoimidazole-4-carboxamide-ribonucleotide to inosine monophosphate. This is the final step in de novo purine production.
Probab=34.92 E-value=2.2e+02 Score=22.18 Aligned_cols=26 Identities=27% Similarity=0.271 Sum_probs=20.1
Q ss_pred HHHHHHHHHHhCCCeEEEEcCCchhhhh
Q 029508 24 PMMQVAKLLHSKGFHITFVNTEFNHRRL 51 (192)
Q Consensus 24 P~l~La~~La~rGh~VT~it~~~~~~~~ 51 (192)
=+.++++.|.+.|.++ +.|....+.+
T Consensus 12 ~l~~lAk~L~~lGf~I--~AT~GTAk~L 37 (187)
T cd01421 12 GLVEFAKELVELGVEI--LSTGGTAKFL 37 (187)
T ss_pred cHHHHHHHHHHCCCEE--EEccHHHHHH
Confidence 3678999999999887 4666666655
No 208
>PRK10964 ADP-heptose:LPS heptosyl transferase I; Provisional
Probab=34.59 E-value=77 Score=26.17 Aligned_cols=42 Identities=14% Similarity=0.102 Sum_probs=36.6
Q ss_pred eEEEEcCCCccChHHHHHHHHHHHhC--CCeEEEEcCCchhhhh
Q 029508 10 HAVCVPYPAQGHVSPMMQVAKLLHSK--GFHITFVNTEFNHRRL 51 (192)
Q Consensus 10 ~Il~~p~p~~GH~~P~l~La~~La~r--Gh~VT~it~~~~~~~~ 51 (192)
||+++-.-+.|.+.-...+.+.|.++ +.+||+++.+.....+
T Consensus 2 ~ILii~~~~iGD~v~~~p~~~~lk~~~P~a~I~~l~~~~~~~l~ 45 (322)
T PRK10964 2 RVLIVKTSSMGDVLHTLPALTDAQQAIPGIQFDWVVEEGFAQIP 45 (322)
T ss_pred eEEEEeccchHHHHhHHHHHHHHHHhCCCCEEEEEECHHHHHHH
Confidence 78999988999999999999999986 9999999988766533
No 209
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=34.54 E-value=1.1e+02 Score=22.69 Aligned_cols=41 Identities=17% Similarity=0.108 Sum_probs=34.4
Q ss_pred EEEEcCCCccChHHHHHHHHHHHhCCCeEEEEcCCchhhhh
Q 029508 11 AVCVPYPAQGHVSPMMQVAKLLHSKGFHITFVNTEFNHRRL 51 (192)
Q Consensus 11 Il~~p~p~~GH~~P~l~La~~La~rGh~VT~it~~~~~~~~ 51 (192)
+++...||.|=-.-.++++...+.+|..|.+++.+...+.+
T Consensus 2 ~li~G~~G~GKT~l~~~~~~~~~~~g~~v~~~s~e~~~~~~ 42 (187)
T cd01124 2 TLLSGGPGTGKTTFALQFLYAGLARGEPGLYVTLEESPEEL 42 (187)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHCCCcEEEEECCCCHHHH
Confidence 46677788898888999999999999999999987766554
No 210
>COG0543 UbiB 2-polyprenylphenol hydroxylase and related flavodoxin oxidoreductases [Coenzyme metabolism / Energy production and conversion]
Probab=34.42 E-value=52 Score=26.49 Aligned_cols=37 Identities=22% Similarity=0.382 Sum_probs=29.4
Q ss_pred EEEEcCCCccChHHHHHHHHHHHhCC--CeEEEEcCCchhh
Q 029508 11 AVCVPYPAQGHVSPMMQVAKLLHSKG--FHITFVNTEFNHR 49 (192)
Q Consensus 11 Il~~p~p~~GH~~P~l~La~~La~rG--h~VT~it~~~~~~ 49 (192)
|+++. .|.|. .|+.++++++.++| .+|+++......+
T Consensus 110 vllia-gGtG~-aPl~~i~~~~~~~~~~~~V~~~~G~~~~~ 148 (252)
T COG0543 110 VLLIA-GGTGI-APLYAIAKELKEKGDANKVTLLYGARTAK 148 (252)
T ss_pred EEEEe-cccCH-hHHHHHHHHHHhcCCCceEEEEEeccChh
Confidence 55554 45665 69999999999999 9999998766554
No 211
>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1.1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....
Probab=34.39 E-value=41 Score=24.22 Aligned_cols=21 Identities=24% Similarity=0.219 Sum_probs=18.3
Q ss_pred HHHHHHHHhCCCeEEEEcCCc
Q 029508 26 MQVAKLLHSKGFHITFVNTEF 46 (192)
Q Consensus 26 l~La~~La~rGh~VT~it~~~ 46 (192)
.-+|..|+++||+|+++....
T Consensus 11 ~~~a~~L~~~g~~V~l~~r~~ 31 (151)
T PF02558_consen 11 SLYAARLAQAGHDVTLVSRSP 31 (151)
T ss_dssp HHHHHHHHHTTCEEEEEESHH
T ss_pred HHHHHHHHHCCCceEEEEccc
Confidence 347899999999999999887
No 212
>TIGR00679 hpr-ser Hpr(Ser) kinase/phosphatase. The hprK gene of Enterococcus faecalis encodes a bifunctional enzyme: the HPr kinase/phosphatase
Probab=34.32 E-value=2.8e+02 Score=23.31 Aligned_cols=48 Identities=8% Similarity=0.020 Sum_probs=32.3
Q ss_pred HHHHHHHHHhhcCCCCCCCCeEEEEeCCCc--chHHHHHHHhCCceEEecCCchH
Q 029508 99 APFLELLGKLNSSADDQVPPVTCVVSDGIM--GFGRKAAQMLGILDIQFWTASAC 151 (192)
Q Consensus 99 ~~~~~ll~~l~~~~~~~~~~~d~vI~D~~~--~~~~~vA~~lgIP~i~~~t~~a~ 151 (192)
+.-++.++++.+ ...|.+||++-+. .+...+|++.++|.+...-.+..
T Consensus 69 e~~~~~~~~~~~-----~~~P~iIvt~~~~~p~~l~~~a~~~~ip~l~t~~~~~~ 118 (304)
T TIGR00679 69 EEQKQIIHNLLT-----LNPPAIILSKSFTDPTVLLQVNETYQVPILKTDLFSTE 118 (304)
T ss_pred HHHHHHHHHHhC-----CCCCEEEEECcCCCCHHHHHHHHHhCCcEEEeCCcHHH
Confidence 344455555543 1467788887665 35679999999999976665544
No 213
>PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes. Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B.
Probab=34.30 E-value=46 Score=26.36 Aligned_cols=30 Identities=23% Similarity=0.175 Sum_probs=23.2
Q ss_pred EEEEcCCCccChHHHHHHHHHHHhCCCeEEEEcCCc
Q 029508 11 AVCVPYPAQGHVSPMMQVAKLLHSKGFHITFVNTEF 46 (192)
Q Consensus 11 Il~~p~p~~GH~~P~l~La~~La~rGh~VT~it~~~ 46 (192)
-+++|.-|.||= +..|+++||+|+=+=-..
T Consensus 40 rvLvPgCG~g~D------~~~La~~G~~VvGvDls~ 69 (218)
T PF05724_consen 40 RVLVPGCGKGYD------MLWLAEQGHDVVGVDLSP 69 (218)
T ss_dssp EEEETTTTTSCH------HHHHHHTTEEEEEEES-H
T ss_pred eEEEeCCCChHH------HHHHHHCCCeEEEEecCH
Confidence 467799999985 677889999998875443
No 214
>PF01297 TroA: Periplasmic solute binding protein family; InterPro: IPR006127 This is a family of ABC transporter metal-binding lipoproteins. An example is the periplasmic zinc-binding protein TroA P96116 from SWISSPROT that interacts with an ATP-binding cassette transport system in Treponema pallidum and plays a role in the transport of zinc across the cytoplasmic membrane. Related proteins are found in both Gram-positive and Gram-negative bacteria. ; GO: 0046872 metal ion binding, 0030001 metal ion transport; PDB: 2PS9_A 2PS0_A 2OSV_A 2OGW_A 2PS3_A 2PRS_B 3MFQ_C 3GI1_B 2OV3_A 1PQ4_A ....
Probab=34.26 E-value=81 Score=25.16 Aligned_cols=43 Identities=14% Similarity=0.230 Sum_probs=30.1
Q ss_pred HHHHHHHHhhcCCCCCCCCeEEEEeCCCcch--HHHHHHHhCCceEEecCC
Q 029508 100 PFLELLGKLNSSADDQVPPVTCVVSDGIMGF--GRKAAQMLGILDIQFWTA 148 (192)
Q Consensus 100 ~~~~ll~~l~~~~~~~~~~~d~vI~D~~~~~--~~~vA~~lgIP~i~~~t~ 148 (192)
.+.++.+.+++ .++.||+.+....- +..+|++.|+|.+.+.+.
T Consensus 187 ~l~~l~~~ik~------~~v~~i~~e~~~~~~~~~~la~~~g~~vv~ld~l 231 (256)
T PF01297_consen 187 DLAELIKLIKE------NKVKCIFTEPQFSSKLAEALAKETGVKVVYLDPL 231 (256)
T ss_dssp HHHHHHHHHHH------TT-SEEEEETTS-THHHHHHHHCCT-EEEESSTT
T ss_pred HHHHHHHHhhh------cCCcEEEecCCCChHHHHHHHHHcCCcEEEeCCC
Confidence 35556665554 57889999987644 458899999999988887
No 215
>PRK12311 rpsB 30S ribosomal protein S2/unknown domain fusion protein; Provisional
Probab=34.04 E-value=53 Score=27.86 Aligned_cols=32 Identities=19% Similarity=0.076 Sum_probs=23.8
Q ss_pred CeEEEEe-CCCc-chHHHHHHHhCCceEEecCCc
Q 029508 118 PVTCVVS-DGIM-GFGRKAAQMLGILDIQFWTAS 149 (192)
Q Consensus 118 ~~d~vI~-D~~~-~~~~~vA~~lgIP~i~~~t~~ 149 (192)
.||+||. |.-. ..+..-|.++|||+|.+.=+.
T Consensus 152 ~Pd~viv~d~~~e~~AI~EA~kl~IPvIaivDTn 185 (326)
T PRK12311 152 LPDLLFVIDTNKEDIAIQEAQRLGIPVAAIVDTN 185 (326)
T ss_pred CCCEEEEeCCccchHHHHHHHHcCCCEEEEeeCC
Confidence 5775554 8765 567789999999999876544
No 216
>PF06925 MGDG_synth: Monogalactosyldiacylglycerol (MGDG) synthase; InterPro: IPR009695 This entry represents a conserved region of approximately 180 residues found towirds the N terminus of a number of plant and bacterial diacylglycerol glucosyltransferases, such as monogalactosyldiacylglycerol synthase [].; GO: 0016758 transferase activity, transferring hexosyl groups, 0009247 glycolipid biosynthetic process
Probab=33.86 E-value=1e+02 Score=22.92 Aligned_cols=24 Identities=25% Similarity=0.362 Sum_probs=16.5
Q ss_pred ChHHHHHHHHHHHh-CC--CeEEEEcC
Q 029508 21 HVSPMMQVAKLLHS-KG--FHITFVNT 44 (192)
Q Consensus 21 H~~P~l~La~~La~-rG--h~VT~it~ 44 (192)
|.....+|+++|.+ +| .+|.++-.
T Consensus 1 H~~aA~Al~eal~~~~~~~~~v~v~D~ 27 (169)
T PF06925_consen 1 HNSAARALAEALERRRGPDAEVEVVDF 27 (169)
T ss_pred CHHHHHHHHHHHHhhcCCCCEEEEEeh
Confidence 67778889999977 44 45555443
No 217
>PF12695 Abhydrolase_5: Alpha/beta hydrolase family; PDB: 3D0K_B 2I3D_B 3DOH_B 3DOI_B 3PFB_A 3S2Z_B 3PFC_A 3QM1_A 3PF8_B 3PF9_A ....
Probab=33.62 E-value=1.2e+02 Score=21.04 Aligned_cols=33 Identities=15% Similarity=0.196 Sum_probs=24.0
Q ss_pred EEEcCCCccChHHHHHHHHHHHhCCCeEEEEcCC
Q 029508 12 VCVPYPAQGHVSPMMQVAKLLHSKGFHITFVNTE 45 (192)
Q Consensus 12 l~~p~p~~GH~~P~l~La~~La~rGh~VT~it~~ 45 (192)
+++. ...+.-.-+..+++.|+++|+.|..+..+
T Consensus 3 v~~H-G~~~~~~~~~~~~~~l~~~G~~v~~~~~~ 35 (145)
T PF12695_consen 3 VLLH-GWGGSRRDYQPLAEALAEQGYAVVAFDYP 35 (145)
T ss_dssp EEEC-TTTTTTHHHHHHHHHHHHTTEEEEEESCT
T ss_pred EEEC-CCCCCHHHHHHHHHHHHHCCCEEEEEecC
Confidence 3344 33445667899999999999998888543
No 218
>PRK15411 rcsA colanic acid capsular biosynthesis activation protein A; Provisional
Probab=33.30 E-value=94 Score=24.08 Aligned_cols=33 Identities=12% Similarity=0.010 Sum_probs=20.4
Q ss_pred CCeEEEEeC----CCcchHHHHHHHh-----CCceEEecCCc
Q 029508 117 PPVTCVVSD----GIMGFGRKAAQML-----GILDIQFWTAS 149 (192)
Q Consensus 117 ~~~d~vI~D----~~~~~~~~vA~~l-----gIP~i~~~t~~ 149 (192)
.+|||||.| .-.+.+.++.+++ +++.+++....
T Consensus 46 ~~pDlvLlDl~~~l~~~~g~~~i~~i~~~~p~~~iivlt~~~ 87 (207)
T PRK15411 46 LRPSVVFINEDCFIHDASNSQRIKQIINQHPNTLFIVFMAIA 87 (207)
T ss_pred cCCCEEEEeCcccCCCCChHHHHHHHHHHCCCCeEEEEECCC
Confidence 468999999 3233334444433 47778876654
No 219
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=33.01 E-value=68 Score=24.38 Aligned_cols=44 Identities=16% Similarity=0.234 Sum_probs=33.0
Q ss_pred CceEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEcCCchhhhh
Q 029508 8 KAHAVCVPYPAQGHVSPMMQVAKLLHSKGFHITFVNTEFNHRRL 51 (192)
Q Consensus 8 ~~~Il~~p~p~~GH~~P~l~La~~La~rGh~VT~it~~~~~~~~ 51 (192)
...++++..+|.|=-.-...+++++..+|+.|-|++.......+
T Consensus 47 ~~~l~l~G~~G~GKThLa~ai~~~~~~~g~~v~f~~~~~L~~~l 90 (178)
T PF01695_consen 47 GENLILYGPPGTGKTHLAVAIANEAIRKGYSVLFITASDLLDEL 90 (178)
T ss_dssp --EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEHHHHHHHH
T ss_pred CeEEEEEhhHhHHHHHHHHHHHHHhccCCcceeEeecCceeccc
Confidence 45788998899885555888899999999999999887766555
No 220
>PF00391 PEP-utilizers: PEP-utilising enzyme, mobile domain; InterPro: IPR008279 A number of enzymes that catalyze the transfer of a phosphoryl group from phosphoenolpyruvate (PEP) via a phospho-histidine intermediate have been shown to be structurally related [, , , ]. All these enzymes share the same catalytic mechanism: they bind PEP and transfer the phosphoryl group from it to a histidine residue. This domain is a "swivelling" beta/beta/alpha domain which is thought to be mobile in all proteins known to contain it []. It is often found associated with the pyruvate phosphate dikinase, PEP/pyruvate-binding domain (IPR002192 from INTERPRO) at its N terminus.; GO: 0016772 transferase activity, transferring phosphorus-containing groups, 0016310 phosphorylation; PDB: 2X0S_A 2OLS_A 2HRO_A 2E28_A 2WQD_A 3T05_D 3T0T_D 3T07_B 2DIK_A 2FM4_A ....
Probab=32.94 E-value=68 Score=20.85 Aligned_cols=30 Identities=23% Similarity=0.085 Sum_probs=21.2
Q ss_pred CeEEEEeCCCc--chHHHHHHHhCCceEEecC
Q 029508 118 PVTCVVSDGIM--GFGRKAAQMLGILDIQFWT 147 (192)
Q Consensus 118 ~~d~vI~D~~~--~~~~~vA~~lgIP~i~~~t 147 (192)
++..||.+--. .-+..+|+++|||+++-..
T Consensus 30 ~~~Giv~~~Gg~~SH~aIlAr~~giP~ivg~~ 61 (80)
T PF00391_consen 30 RVAGIVTEEGGPTSHAAILARELGIPAIVGVG 61 (80)
T ss_dssp TSSEEEESSSSTTSHHHHHHHHTT-EEEESTT
T ss_pred heEEEEEEcCCccchHHHHHHHcCCCEEEeec
Confidence 45677777544 4467999999999987654
No 221
>PLN00141 Tic62-NAD(P)-related group II protein; Provisional
Probab=32.91 E-value=1.2e+02 Score=23.91 Aligned_cols=33 Identities=15% Similarity=0.167 Sum_probs=23.2
Q ss_pred CceEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEcC
Q 029508 8 KAHAVCVPYPAQGHVSPMMQVAKLLHSKGFHITFVNT 44 (192)
Q Consensus 8 ~~~Il~~p~p~~GH~~P~l~La~~La~rGh~VT~it~ 44 (192)
+.+|+++... | .--..+++.|+++||+|+.++-
T Consensus 17 ~~~ilItGas--G--~iG~~l~~~L~~~g~~V~~~~R 49 (251)
T PLN00141 17 TKTVFVAGAT--G--RTGKRIVEQLLAKGFAVKAGVR 49 (251)
T ss_pred CCeEEEECCC--c--HHHHHHHHHHHhCCCEEEEEec
Confidence 4567666633 3 2346789999999999987753
No 222
>TIGR00176 mobB molybdopterin-guanine dinucleotide biosynthesis protein MobB. This molybdenum cofactor biosynthesis enzyme is similar to the urease accessory protein UreG and to the hydrogenase accessory protein HypB, both GTP hydrolases involved in loading nickel into the metallocenters of their respective target enzymes.
Probab=32.79 E-value=1e+02 Score=22.85 Aligned_cols=35 Identities=14% Similarity=0.335 Sum_probs=28.4
Q ss_pred EEEEcCCCccChHHHHHHHHHHHhCCCeEEEEcCC
Q 029508 11 AVCVPYPAQGHVSPMMQVAKLLHSKGFHITFVNTE 45 (192)
Q Consensus 11 Il~~p~p~~GH~~P~l~La~~La~rGh~VT~it~~ 45 (192)
|.++...+.|=-.-+..|+++|.++|++|.++-..
T Consensus 2 i~i~G~~gsGKTtl~~~l~~~l~~~G~~V~viK~~ 36 (155)
T TIGR00176 2 LQIVGPKNSGKTTLIERLVKALKARGYRVATIKHD 36 (155)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEecc
Confidence 34666677887778899999999999999998644
No 223
>PRK14099 glycogen synthase; Provisional
Probab=32.76 E-value=44 Score=29.72 Aligned_cols=37 Identities=11% Similarity=0.134 Sum_probs=27.3
Q ss_pred ceEEEEc-----CCCc-cChHHHHHHHHHHHhCCCeEEEEcCC
Q 029508 9 AHAVCVP-----YPAQ-GHVSPMMQVAKLLHSKGFHITFVNTE 45 (192)
Q Consensus 9 ~~Il~~p-----~p~~-GH~~P~l~La~~La~rGh~VT~it~~ 45 (192)
.||+++. +.=. |=-.-+-.|.++|+++||+|.++.+.
T Consensus 4 ~~il~v~~E~~p~~k~ggl~dv~~~lp~~l~~~g~~v~v~~P~ 46 (485)
T PRK14099 4 LRVLSVASEIFPLIKTGGLADVAGALPAALKAHGVEVRTLVPG 46 (485)
T ss_pred cEEEEEEeccccccCCCcHHHHHHHHHHHHHHCCCcEEEEeCC
Confidence 4666553 3323 34467889999999999999999884
No 224
>TIGR00745 apbA_panE 2-dehydropantoate 2-reductase. This model describes enzymes that perform as 2-dehydropantoate 2-reductase, one of four enzymes required for the de novo biosynthesis of pantothenate (vitamin B5) from Asp and 2-oxoisovalerate. Although few members of the seed alignment are characterized experimentally, nearly all from complete genomes are found in a genome-wide (but not local) context of all three other pantothenate-biosynthetic enzymes (TIGR00222, TIGR00018, TIGR00223). The gene encoding this enzyme is designated apbA in Salmonella typhimurium and panE in Escherichia coli; this protein functions as a monomer and functions in the alternative pyrimidine biosynthetic, or APB, pathway, used to synthesize the pyrimidine moiety of thiamine. Note, synthesis of the pyrimidine moiety of thiamine occurs either via the first five steps in de novo purine biosynthesis, which uses the pur gene products, or through the APB pathway. Note that this family includes both NADH and NADPH
Probab=32.70 E-value=36 Score=27.44 Aligned_cols=25 Identities=16% Similarity=0.185 Sum_probs=18.8
Q ss_pred HHHHHHHhCCCeEEEEcCCchhhhh
Q 029508 27 QVAKLLHSKGFHITFVNTEFNHRRL 51 (192)
Q Consensus 27 ~La~~La~rGh~VT~it~~~~~~~~ 51 (192)
-+|..|++.||+||++.-....+.+
T Consensus 5 ~~a~~L~~~G~~V~l~~r~~~~~~i 29 (293)
T TIGR00745 5 LYGAYLARAGHDVTLLARGEQLEAL 29 (293)
T ss_pred HHHHHHHhCCCcEEEEecHHHHHHH
Confidence 4788999999999999875333333
No 225
>cd01017 AdcA Metal binding protein AcdA. These proteins have been shown to function in the ABC uptake of Zn2+ and Mn2+ and in competence for genetic transformation and adhesion. The AcdA proteins belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. They are comprised of two globular subdomains connected by a long alpha helix and they bind their ligand in the cleft between these domains. In addition, many of these proteins have a low complexity region containing metal binding histidine-rich motif (repetitive HDH sequence).
Probab=32.69 E-value=97 Score=25.26 Aligned_cols=44 Identities=11% Similarity=0.052 Sum_probs=31.9
Q ss_pred HHHHHHHHhhcCCCCCCCCeEEEEeCCCcch--HHHHHHHhCCceEEecCCc
Q 029508 100 PFLELLGKLNSSADDQVPPVTCVVSDGIMGF--GRKAAQMLGILDIQFWTAS 149 (192)
Q Consensus 100 ~~~~ll~~l~~~~~~~~~~~d~vI~D~~~~~--~~~vA~~lgIP~i~~~t~~ 149 (192)
.+.++++.+++ .++.||+++....- +..+|++.|++.+.+.+.+
T Consensus 208 ~l~~l~~~ik~------~~v~~if~e~~~~~~~~~~la~~~g~~v~~ld~l~ 253 (282)
T cd01017 208 QLAELVEFVKK------SDVKYIFFEENASSKIAETLAKETGAKLLVLNPLE 253 (282)
T ss_pred HHHHHHHHHHH------cCCCEEEEeCCCChHHHHHHHHHcCCcEEEecccc
Confidence 35556665554 57889999987643 4579999999998877643
No 226
>PLN02662 cinnamyl-alcohol dehydrogenase family protein
Probab=32.64 E-value=70 Score=26.05 Aligned_cols=33 Identities=18% Similarity=0.303 Sum_probs=22.8
Q ss_pred ceEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEcCC
Q 029508 9 AHAVCVPYPAQGHVSPMMQVAKLLHSKGFHITFVNTE 45 (192)
Q Consensus 9 ~~Il~~p~p~~GH~~P~l~La~~La~rGh~VT~it~~ 45 (192)
.+|++.- +.|++- .+|+++|+++||+|+.+.-.
T Consensus 5 ~~ilVtG--atGfIG--~~l~~~L~~~g~~V~~~~r~ 37 (322)
T PLN02662 5 KVVCVTG--ASGYIA--SWLVKLLLQRGYTVKATVRD 37 (322)
T ss_pred CEEEEEC--ChHHHH--HHHHHHHHHCCCEEEEEEcC
Confidence 4555543 445553 56899999999999877643
No 227
>COG0665 DadA Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism]
Probab=32.57 E-value=67 Score=26.92 Aligned_cols=35 Identities=20% Similarity=0.214 Sum_probs=27.3
Q ss_pred CCceEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEcCCc
Q 029508 7 RKAHAVCVPYPAQGHVSPMMQVAKLLHSKGFHITFVNTEF 46 (192)
Q Consensus 7 ~~~~Il~~p~p~~GH~~P~l~La~~La~rGh~VT~it~~~ 46 (192)
.+.+|+++-....| +..|..|+++|++|+++-...
T Consensus 3 ~~~~vvVIGgGi~G-----ls~A~~La~~G~~V~vie~~~ 37 (387)
T COG0665 3 MKMDVVIIGGGIVG-----LSAAYYLAERGADVTVLEAGE 37 (387)
T ss_pred CcceEEEECCcHHH-----HHHHHHHHHcCCEEEEEecCc
Confidence 35678888755445 889999999999999986544
No 228
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=32.41 E-value=1.1e+02 Score=23.70 Aligned_cols=38 Identities=18% Similarity=0.296 Sum_probs=32.6
Q ss_pred CceE-EEEcCCCccChHHHHHHHHHHHhCCCeEEEEcCC
Q 029508 8 KAHA-VCVPYPAQGHVSPMMQVAKLLHSKGFHITFVNTE 45 (192)
Q Consensus 8 ~~~I-l~~p~p~~GH~~P~l~La~~La~rGh~VT~it~~ 45 (192)
+.++ .+...||.|--.-.++++...+.+|..|.++.++
T Consensus 22 ~g~i~~i~G~~GsGKT~l~~~la~~~~~~~~~v~yi~~e 60 (225)
T PRK09361 22 RGTITQIYGPPGSGKTNICLQLAVEAAKNGKKVIYIDTE 60 (225)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEECC
Confidence 3444 5777799999999999999999999999999988
No 229
>PF02233 PNTB: NAD(P) transhydrogenase beta subunit; InterPro: IPR012136 NAD(P) transhydrogenase catalyses the transfer of reducing equivalents between NAD(H) and NADP(H), coupled to the translocation of protons across a membrane []. It is an integral membrane protein found in most organisms except for yeasts, plants and some bacterial species. In bacterial species it is located in the cytoplasmic membrane, while in mitochondria it is located in the inner membrane. Under most physiological conditions this enzyme synthesises NADPH, driven by consumption of the proton electrochemical gradient. The resulting NADPH is subsequently used for biosynthetic reactions or the reduction of glutathione. The global structure of this enzyme is similar in all organisms, consisting of three distinct domains, though the polypeptide composition can vary. Domain I binds NAD(+)/NADH, domain II is a hydrophobic membrane-spanning domain, and domain III binds NADP(+)/NADPH. Domain I is composed of two subdomains, both of which form a Rossman fold, while domain III consists of a single Rossman fold where the NADP(+) is flipped relative to the normal orientation of bound nucleotides within the Rossman fold [, , ]. Several residues within these domains are thought to make functionally important interdomain contacts for hydride transfer between these domains []. Proton translocation occurs through domain II and is thought to induce conformational changes which are transmitted across domain III to the site of hydride transfer between domains I and III. This entry represents the beta subunit found in bacterial two-subunit NADP(H) transhydrogenases. This subunit forms domain III and part of the transmembrane domain II. ; GO: 0008750 NAD(P)+ transhydrogenase (AB-specific) activity, 0050661 NADP binding, 0055114 oxidation-reduction process, 0016021 integral to membrane; PDB: 1PT9_A 1DJL_A 1U31_B 2BRU_C 1PTJ_C 1HZZ_C 2FRD_C 2FSV_C 1XLT_C 1U2G_C ....
Probab=32.36 E-value=64 Score=28.75 Aligned_cols=36 Identities=25% Similarity=0.457 Sum_probs=27.5
Q ss_pred ceEEEEcCCCcc-----ChHHHHHHHHHHHhCCCeEEEEcCCc
Q 029508 9 AHAVCVPYPAQG-----HVSPMMQVAKLLHSKGFHITFVNTEF 46 (192)
Q Consensus 9 ~~Il~~p~p~~G-----H~~P~l~La~~La~rGh~VT~it~~~ 46 (192)
.+|+++| |+| =.....+|++.|.+||.+|.|.+.+-
T Consensus 308 ~~VvIVP--GYGmAvAqAQ~~v~el~~~L~~~G~~V~faIHPV 348 (463)
T PF02233_consen 308 KKVVIVP--GYGMAVAQAQHAVAELADLLEERGVEVKFAIHPV 348 (463)
T ss_dssp SEEEEEE--SHHHHHCTTHHHHHHHHHHHHHTT-EEEEEE-TT
T ss_pred CceEEec--CchHHHHHHHHHHHHHHHHHHhCCCEEEEEeccc
Confidence 5888888 444 22689999999999999999998764
No 230
>PRK10481 hypothetical protein; Provisional
Probab=32.31 E-value=97 Score=24.80 Aligned_cols=45 Identities=11% Similarity=-0.026 Sum_probs=30.8
Q ss_pred HHHHHHHHhhcCCCCCCCCeEEEEeCCCcch--H-HHHHHHhCCceEEecCCch
Q 029508 100 PFLELLGKLNSSADDQVPPVTCVVSDGIMGF--G-RKAAQMLGILDIQFWTASA 150 (192)
Q Consensus 100 ~~~~ll~~l~~~~~~~~~~~d~vI~D~~~~~--~-~~vA~~lgIP~i~~~t~~a 150 (192)
.+.+..+++.. .+.|+|+.|+.... . ..+.+.+|+|++.-.+..+
T Consensus 170 ~l~~aa~~L~~------~gaD~Ivl~C~G~~~~~~~~le~~lg~PVI~~n~a~a 217 (224)
T PRK10481 170 ELIDAGKELLD------QGADVIVLDCLGYHQRHRDLLQKALDVPVLLSNVLVA 217 (224)
T ss_pred HHHHHHHHhhc------CCCCEEEEeCCCcCHHHHHHHHHHHCcCEEcHHHHHH
Confidence 45555666543 57999999986532 2 3677899999987655443
No 231
>cd00861 ProRS_anticodon_short ProRS Prolyl-anticodon binding domain, short version found predominantly in bacteria. ProRS belongs to class II aminoacyl-tRNA synthetases (aaRS). This alignment contains the anticodon binding domain, which is responsible for specificity in tRNA-binding, so that the activated amino acid is transferred to a ribose 3' OH group of the appropriate tRNA only.
Probab=32.23 E-value=1e+02 Score=20.04 Aligned_cols=35 Identities=11% Similarity=0.179 Sum_probs=26.4
Q ss_pred eEEEEcCCCc--cChHHHHHHHHHHHhCCCeEEEEcC
Q 029508 10 HAVCVPYPAQ--GHVSPMMQVAKLLHSKGFHITFVNT 44 (192)
Q Consensus 10 ~Il~~p~p~~--GH~~P~l~La~~La~rGh~VT~it~ 44 (192)
.++++|.... .+..-...++..|.+.|.+|.+-..
T Consensus 3 qv~i~p~~~~~~~~~~~a~~la~~Lr~~g~~v~~d~~ 39 (94)
T cd00861 3 DVVIIPMNMKDEVQQELAEKLYAELQAAGVDVLLDDR 39 (94)
T ss_pred EEEEEEcCCCcHHHHHHHHHHHHHHHHCCCEEEEECC
Confidence 5778886542 4566788899999999999988543
No 232
>PF01380 SIS: SIS domain SIS domain web page.; InterPro: IPR001347 The SIS (Sugar ISomerase) domain is a phosphosugar-binding domain [] found in many phosphosugar isomerases and phosphosugar binding proteins. SIS domains are also found in proteins that regulate the expression of genes involved in synthesis of phosphosugars possibly by binding to the end-product of the pathway.; GO: 0005529 sugar binding, 0005975 carbohydrate metabolic process; PDB: 3TBF_C 2V4M_A 2ZJ4_A 2ZJ3_A 3FKJ_A 3ODP_A 3EUA_H 1VIV_A 1M3S_B 1TZB_A ....
Probab=32.19 E-value=94 Score=21.45 Aligned_cols=31 Identities=6% Similarity=0.329 Sum_probs=26.0
Q ss_pred CccChHHHHHHHHHHHhCCCeEEEEcCCchh
Q 029508 18 AQGHVSPMMQVAKLLHSKGFHITFVNTEFNH 48 (192)
Q Consensus 18 ~~GH~~P~l~La~~La~rGh~VT~it~~~~~ 48 (192)
..|.-..+.+.++.+.++|..|..+|.....
T Consensus 62 ~sg~~~~~~~~~~~ak~~g~~vi~iT~~~~~ 92 (131)
T PF01380_consen 62 YSGETRELIELLRFAKERGAPVILITSNSES 92 (131)
T ss_dssp SSSTTHHHHHHHHHHHHTTSEEEEEESSTTS
T ss_pred ccccchhhhhhhHHHHhcCCeEEEEeCCCCC
Confidence 5678889999999999999999888866544
No 233
>PRK06849 hypothetical protein; Provisional
Probab=32.15 E-value=1.2e+02 Score=25.92 Aligned_cols=35 Identities=14% Similarity=0.306 Sum_probs=26.3
Q ss_pred CceEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEcCCc
Q 029508 8 KAHAVCVPYPAQGHVSPMMQVAKLLHSKGFHITFVNTEF 46 (192)
Q Consensus 8 ~~~Il~~p~p~~GH~~P~l~La~~La~rGh~VT~it~~~ 46 (192)
+.+|++.. .++ .-.++++|.|.++||+|.++....
T Consensus 4 ~~~VLI~G---~~~-~~~l~iar~l~~~G~~Vi~~d~~~ 38 (389)
T PRK06849 4 KKTVLITG---ARA-PAALELARLFHNAGHTVILADSLK 38 (389)
T ss_pred CCEEEEeC---CCc-HHHHHHHHHHHHCCCEEEEEeCCc
Confidence 45666663 222 358999999999999999997764
No 234
>TIGR02114 coaB_strep phosphopantothenate--cysteine ligase, streptococcal. In most bacteria, a single bifunctional protein catalyses phosphopantothenoylcysteine decarboxylase and phosphopantothenate--cysteine ligase activities, sequential steps in coenzyme A biosynthesis (see TIGR00521). These activities reside in separate proteins encoded by tandem genes in some bacterial lineages. This model describes proteins from the genera Streptococcus and Enterococcus homologous to the C-terminal region of TIGR00521, corresponding to phosphopantothenate--cysteine ligase activity.
Probab=32.01 E-value=48 Score=26.30 Aligned_cols=19 Identities=21% Similarity=0.301 Sum_probs=16.7
Q ss_pred HHHHHHHHHhCCCeEEEEc
Q 029508 25 MMQVAKLLHSKGFHITFVN 43 (192)
Q Consensus 25 ~l~La~~La~rGh~VT~it 43 (192)
-..+|++|+++|++|+++.
T Consensus 28 G~AIA~~la~~Ga~Vvlv~ 46 (227)
T TIGR02114 28 GKIITETFLSAGHEVTLVT 46 (227)
T ss_pred HHHHHHHHHHCCCEEEEEc
Confidence 4678999999999999875
No 235
>TIGR01675 plant-AP plant acid phosphatase. This model explicitly excludes the VSPs which lack the nucleophilc aspartate. The possibility exists, however, that some members of this family may, while containing all of the conserved HAD-superfamily catalytic residues, lack activity and have a function related to the function of the VSPs rather than the acid phosphatases.
Probab=31.96 E-value=61 Score=26.02 Aligned_cols=26 Identities=8% Similarity=0.224 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHhCCCeEEEEcCCchh
Q 029508 23 SPMMQVAKLLHSKGFHITFVNTEFNH 48 (192)
Q Consensus 23 ~P~l~La~~La~rGh~VT~it~~~~~ 48 (192)
-+++++.+.|.++|+.|-++|.-...
T Consensus 123 p~al~l~~~l~~~G~~Vf~lTGR~e~ 148 (229)
T TIGR01675 123 PEGLKLYQKIIELGIKIFLLSGRWEE 148 (229)
T ss_pred HHHHHHHHHHHHCCCEEEEEcCCChH
Confidence 57899999999999999999987643
No 236
>CHL00076 chlB photochlorophyllide reductase subunit B
Probab=31.94 E-value=76 Score=28.60 Aligned_cols=27 Identities=11% Similarity=0.007 Sum_probs=22.2
Q ss_pred CCeEEEEeCCCcchHHHHHHHhCCceEEec
Q 029508 117 PPVTCVVSDGIMGFGRKAAQMLGILDIQFW 146 (192)
Q Consensus 117 ~~~d~vI~D~~~~~~~~vA~~lgIP~i~~~ 146 (192)
.+||+||.+. |...+|+++|||++.++
T Consensus 373 ~~pdliiGs~---~er~ia~~lgiP~~~is 399 (513)
T CHL00076 373 VEPSAIFGTQ---MERHIGKRLDIPCGVIS 399 (513)
T ss_pred cCCCEEEECc---hhhHHHHHhCCCEEEee
Confidence 3699999987 56778999999997654
No 237
>cd03809 GT1_mtfB_like This family is most closely related to the GT1 family of glycosyltransferases. mtfB (mannosyltransferase B) in E. coli has been shown to direct the growth of the O9-specific polysaccharide chain. It transfers two mannoses into the position 3 of the previously synthesized polysaccharide.
Probab=31.84 E-value=43 Score=27.07 Aligned_cols=29 Identities=7% Similarity=-0.161 Sum_probs=23.2
Q ss_pred cChHHHHHHHHHHHhCCCeEEEEcCCchh
Q 029508 20 GHVSPMMQVAKLLHSKGFHITFVNTEFNH 48 (192)
Q Consensus 20 GH~~P~l~La~~La~rGh~VT~it~~~~~ 48 (192)
|--.-+.+|++.|+++||+|++++.....
T Consensus 16 G~~~~~~~l~~~L~~~~~~v~~~~~~~~~ 44 (365)
T cd03809 16 GIGRYARELLRALLKLDPEEVLLLLPGAP 44 (365)
T ss_pred cHHHHHHHHHHHHHhcCCceEEEEecCcc
Confidence 33345799999999999999999876543
No 238
>PRK14974 cell division protein FtsY; Provisional
Probab=31.74 E-value=1.3e+02 Score=25.58 Aligned_cols=40 Identities=18% Similarity=0.276 Sum_probs=34.3
Q ss_pred CceEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEcCCch
Q 029508 8 KAHAVCVPYPAQGHVSPMMQVAKLLHSKGFHITFVNTEFN 47 (192)
Q Consensus 8 ~~~Il~~p~p~~GH~~P~l~La~~La~rGh~VT~it~~~~ 47 (192)
..-|+++..+|.|=-.-...||..|.++|++|.+++++.+
T Consensus 140 ~~vi~~~G~~GvGKTTtiakLA~~l~~~g~~V~li~~Dt~ 179 (336)
T PRK14974 140 PVVIVFVGVNGTGKTTTIAKLAYYLKKNGFSVVIAAGDTF 179 (336)
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEecCCcC
Confidence 3456688889999999999999999999999999988754
No 239
>PF02603 Hpr_kinase_N: HPr Serine kinase N terminus; InterPro: IPR011126 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. This entry represents the N-terminal region of Hpr Serine/threonine kinase PtsK. This kinase is the sensor in a multicomponent phosphorelay system in control of carbon catabolic repression in bacteria []. This kinase in unusual in that it recognises the tertiary structure of its target and is a member of a novel family unrelated to any previously described protein phosphorylating enzymes []. X-ray analysis of the full-length crystalline enzyme from Staphylococcus xylosus at a resolution of 1.95 A shows the enzyme to consist of two clearly separated domains that are assembled in a hexameric structure resembling a three-bladed propeller. The blades are formed by two N-terminal domains each, and the compact central hub assembles the C-terminal kinase domains []. ; GO: 0000155 two-component sensor activity, 0004672 protein kinase activity, 0005524 ATP binding, 0000160 two-component signal transduction system (phosphorelay), 0006109 regulation of carbohydrate metabolic process; PDB: 1KNX_B 1KO7_A.
Probab=31.66 E-value=58 Score=23.34 Aligned_cols=33 Identities=15% Similarity=0.056 Sum_probs=21.0
Q ss_pred CCeEEEEeCCCc--chHHHHHHHhCCceEEecCCc
Q 029508 117 PPVTCVVSDGIM--GFGRKAAQMLGILDIQFWTAS 149 (192)
Q Consensus 117 ~~~d~vI~D~~~--~~~~~vA~~lgIP~i~~~t~~ 149 (192)
..|.+||++-+. .+...+|++.|+|.....-..
T Consensus 81 ~~P~iIvt~~~~~p~~l~e~a~~~~ipll~t~~~t 115 (127)
T PF02603_consen 81 NPPCIIVTRGLEPPPELIELAEKYNIPLLRTPLST 115 (127)
T ss_dssp T-S-EEEETTT---HHHHHHHHHCT--EEEESS-H
T ss_pred CCCEEEEECcCCCCHHHHHHHHHhCCcEEEcCCcH
Confidence 467788888766 456799999999998765533
No 240
>PLN03050 pyridoxine (pyridoxamine) 5'-phosphate oxidase; Provisional
Probab=31.20 E-value=49 Score=26.78 Aligned_cols=33 Identities=21% Similarity=0.311 Sum_probs=26.4
Q ss_pred ceEEEEcCCCc--cChHHHHHHHHHHHhCCCeEEEEcC
Q 029508 9 AHAVCVPYPAQ--GHVSPMMQVAKLLHSKGFHITFVNT 44 (192)
Q Consensus 9 ~~Il~~p~p~~--GH~~P~l~La~~La~rGh~VT~it~ 44 (192)
.+|+++..+|- |. -+.+||+|+++|++|+++..
T Consensus 61 ~~V~VlcG~GNNGGD---Glv~AR~L~~~G~~V~v~~~ 95 (246)
T PLN03050 61 PRVLLVCGPGNNGGD---GLVAARHLAHFGYEVTVCYP 95 (246)
T ss_pred CeEEEEECCCCCchh---HHHHHHHHHHCCCeEEEEEc
Confidence 57888886654 22 57789999999999999974
No 241
>TIGR02699 archaeo_AfpA archaeoflavoprotein AfpA. The prototypical member of this archaeal protein family is AF1518 from Archaeoglobus fulgidus. This homodimer with two non-covalently bound FMN cofactors can receive electrons from ferredoxin, but not from a number of other electron donors such as NADH or rubredoxin. It can then donate electrons to various reductases.
Probab=31.00 E-value=70 Score=24.50 Aligned_cols=32 Identities=16% Similarity=0.211 Sum_probs=25.8
Q ss_pred CccChHH-HHHHHHHHHh-CCCeEEEEcCCchhh
Q 029508 18 AQGHVSP-MMQVAKLLHS-KGFHITFVNTEFNHR 49 (192)
Q Consensus 18 ~~GH~~P-~l~La~~La~-rGh~VT~it~~~~~~ 49 (192)
|-||... ..++.+.|.+ +|++|.++.++.-.+
T Consensus 8 Gsg~~l~e~v~~l~~L~~~~g~eV~vv~S~~A~~ 41 (174)
T TIGR02699 8 GSGDKLPETYSIMKDVKNRYGDEIDVFLSKAGEQ 41 (174)
T ss_pred ccHHHHHHHHHHHHHHHHhcCCEEEEEECHhHHH
Confidence 4478766 8899999984 699999999987664
No 242
>TIGR03264 met_CoM_red_C methyl-coenzyme M reductase I operon protein C. has several modified sites, so accessory proteins are expected. Several methanogens have encode two such enzymes, designated I and II; this protein occurs only operons of type I. The precise function is unknown.
Probab=30.86 E-value=65 Score=24.94 Aligned_cols=34 Identities=15% Similarity=0.354 Sum_probs=27.9
Q ss_pred eEEEEcCCCccCh-HHHHHHHHHHHhCCCeEEEEc
Q 029508 10 HAVCVPYPAQGHV-SPMMQVAKLLHSKGFHITFVN 43 (192)
Q Consensus 10 ~Il~~p~p~~GH~-~P~l~La~~La~rGh~VT~it 43 (192)
=+++.++|++=|+ -|.-+++..|.+.|.++.++.
T Consensus 35 V~vVamSpgrrHitkpvCdIt~~LRr~Gi~ts~lv 69 (194)
T TIGR03264 35 VVAVAMSPGRRHITKPVCEITYALREAGIQTSVLV 69 (194)
T ss_pred EEEEecCcccccCCCcHHHHHHHHHHcCCccceEE
Confidence 3457788999998 689999999999998766553
No 243
>PF03796 DnaB_C: DnaB-like helicase C terminal domain; InterPro: IPR007694 The hexameric helicase DnaB unwinds the DNA duplex at the Escherichia coli chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis. ; GO: 0003678 DNA helicase activity, 0005524 ATP binding, 0006260 DNA replication; PDB: 1Q57_E 1E0K_D 1E0J_B 1CR2_A 1CR4_A 1CR1_A 1CR0_A 1MI8_A 2R6D_B 2R6C_C ....
Probab=30.84 E-value=1.2e+02 Score=24.17 Aligned_cols=42 Identities=19% Similarity=0.336 Sum_probs=34.3
Q ss_pred EEEEcCCCccChHHHHHHHHHHHhC-CCeEEEEcCCchhhhhh
Q 029508 11 AVCVPYPAQGHVSPMMQVAKLLHSK-GFHITFVNTEFNHRRLI 52 (192)
Q Consensus 11 Il~~p~p~~GH~~P~l~La~~La~r-Gh~VT~it~~~~~~~~~ 52 (192)
+++...|+.|--.-++++|..++.+ |+.|.+++.+-....+.
T Consensus 22 ~vi~a~pg~GKT~~~l~ia~~~a~~~~~~vly~SlEm~~~~l~ 64 (259)
T PF03796_consen 22 TVIAARPGVGKTAFALQIALNAALNGGYPVLYFSLEMSEEELA 64 (259)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHHHTTSSEEEEEESSS-HHHHH
T ss_pred EEEEecccCCchHHHHHHHHHHHHhcCCeEEEEcCCCCHHHHH
Confidence 4466669999999999999999997 69999999987666553
No 244
>COG2085 Predicted dinucleotide-binding enzymes [General function prediction only]
Probab=30.76 E-value=59 Score=25.81 Aligned_cols=29 Identities=14% Similarity=0.157 Sum_probs=22.1
Q ss_pred CccChHHHHHHHHHHHhCCCeEEEEcCCchh
Q 029508 18 AQGHVSPMMQVAKLLHSKGFHITFVNTEFNH 48 (192)
Q Consensus 18 ~~GH~~P~l~La~~La~rGh~VT~it~~~~~ 48 (192)
|.|++ -..|+++|+..||+|++.+.....
T Consensus 8 GtGni--G~alA~~~a~ag~eV~igs~r~~~ 36 (211)
T COG2085 8 GTGNI--GSALALRLAKAGHEVIIGSSRGPK 36 (211)
T ss_pred ccChH--HHHHHHHHHhCCCeEEEecCCChh
Confidence 44544 457899999999999999776544
No 245
>PRK13608 diacylglycerol glucosyltransferase; Provisional
Probab=30.75 E-value=95 Score=26.52 Aligned_cols=36 Identities=8% Similarity=0.147 Sum_probs=27.6
Q ss_pred CCceEEEEcC-CCccChHHHHHHHHHHHhCCC---eEEEE
Q 029508 7 RKAHAVCVPY-PAQGHVSPMMQVAKLLHSKGF---HITFV 42 (192)
Q Consensus 7 ~~~~Il~~p~-p~~GH~~P~l~La~~La~rGh---~VT~i 42 (192)
++.||++++. -|.||......|.++|.++|. +|.++
T Consensus 4 ~~~~vlil~~~~G~GH~~aA~al~~~~~~~~~~~~~~~~~ 43 (391)
T PRK13608 4 QNKKILIITGSFGNGHMQVTQSIVNQLNDMNLDHLSVIEH 43 (391)
T ss_pred CCceEEEEECCCCchHHHHHHHHHHHHHhhCCCCceEEEe
Confidence 3558887765 666999999999999998864 45554
No 246
>cd03466 Nitrogenase_NifN_2 Nitrogenase_nifN_2: A subgroup of the NifN subunit of the NifEN complex: NifN forms an alpha2beta2 tetramer with NifE. NifN and nifE are structurally homologous to nitrogenase MoFe protein beta and alpha subunits respectively. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of the MoFe protein. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to the NifEN complex where it is further processed to FeMoco. The nifEN bound precursor of FeMoco has been identified as a molybdenum-free, iron- and sulfur- containing analog of FeMoco. It has been suggested that this nifEN bound precursor also acts as a cofactor precursor in nitrogenase systems which require a cofactor other than FeMoco: i.e. iron-vanadium cofactor (FeVco) or iron only cofactor (FeFeco). This group also contains the Clostidium fused NifN-NifB protein.
Probab=30.74 E-value=90 Score=27.29 Aligned_cols=26 Identities=27% Similarity=0.563 Sum_probs=21.5
Q ss_pred CCeEEEEeCCCcchHHHHHHHhCCceEEe
Q 029508 117 PPVTCVVSDGIMGFGRKAAQMLGILDIQF 145 (192)
Q Consensus 117 ~~~d~vI~D~~~~~~~~vA~~lgIP~i~~ 145 (192)
.++|++|.+. +...+|+++|||.+..
T Consensus 371 ~~~dliiG~s---~~~~~a~~~~ip~~~~ 396 (429)
T cd03466 371 LKIDVLIGNS---YGRRIAEKLGIPLIRI 396 (429)
T ss_pred cCCCEEEECc---hhHHHHHHcCCCEEEe
Confidence 4689999887 4679999999999855
No 247
>COG0003 ArsA Predicted ATPase involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=30.72 E-value=1.1e+02 Score=25.98 Aligned_cols=41 Identities=20% Similarity=0.182 Sum_probs=32.2
Q ss_pred ceEEEEcC-CCccChHHHHHHHHHHHhCCCeEEEEcCCchhh
Q 029508 9 AHAVCVPY-PAQGHVSPMMQVAKLLHSKGFHITFVNTEFNHR 49 (192)
Q Consensus 9 ~~Il~~p~-p~~GH~~P~l~La~~La~rGh~VT~it~~~~~~ 49 (192)
.||++|.. .|.|=-.-.-.+|..||++|.+|-+++++..+.
T Consensus 2 ~riv~f~GKGGVGKTT~aaA~A~~lA~~g~kvLlvStDPAhs 43 (322)
T COG0003 2 TRIVFFTGKGGVGKTTIAAATAVKLAESGKKVLLVSTDPAHS 43 (322)
T ss_pred cEEEEEecCCcccHHHHHHHHHHHHHHcCCcEEEEEeCCCCc
Confidence 57888876 566887788889999999998877777776553
No 248
>PRK13185 chlL protochlorophyllide reductase iron-sulfur ATP-binding protein; Provisional
Probab=30.58 E-value=1.1e+02 Score=24.60 Aligned_cols=35 Identities=6% Similarity=0.061 Sum_probs=27.7
Q ss_pred EEEEcCCCccChHHHHHHHHHHHhCCCeEEEEcCC
Q 029508 11 AVCVPYPAQGHVSPMMQVAKLLHSKGFHITFVNTE 45 (192)
Q Consensus 11 Il~~p~p~~GH~~P~l~La~~La~rGh~VT~it~~ 45 (192)
|.+.-=.|.|--.-...||..|+++|++|-++=.+
T Consensus 5 Iav~~KGGVGKTT~~~nLA~~la~~G~kVLliD~D 39 (270)
T PRK13185 5 LAVYGKGGIGKSTTSSNLSAAFAKLGKKVLQIGCD 39 (270)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecc
Confidence 34443366688899999999999999999988544
No 249
>PRK05973 replicative DNA helicase; Provisional
Probab=30.56 E-value=1.1e+02 Score=24.74 Aligned_cols=42 Identities=14% Similarity=0.174 Sum_probs=35.2
Q ss_pred eEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEcCCchhhhh
Q 029508 10 HAVCVPYPAQGHVSPMMQVAKLLHSKGFHITFVNTEFNHRRL 51 (192)
Q Consensus 10 ~Il~~p~p~~GH~~P~l~La~~La~rGh~VT~it~~~~~~~~ 51 (192)
-+++..-||.|=-+-.++++...+.+|..|.|++.+...+.+
T Consensus 66 l~LIaG~PG~GKT~lalqfa~~~a~~Ge~vlyfSlEes~~~i 107 (237)
T PRK05973 66 LVLLGARPGHGKTLLGLELAVEAMKSGRTGVFFTLEYTEQDV 107 (237)
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEEEeCCHHHH
Confidence 455677799999999999999999999999999988766544
No 250
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=30.38 E-value=1.1e+02 Score=22.19 Aligned_cols=34 Identities=12% Similarity=0.290 Sum_probs=26.4
Q ss_pred eEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEc
Q 029508 10 HAVCVPYPAQGHVSPMMQVAKLLHSKGFHITFVN 43 (192)
Q Consensus 10 ~Il~~p~p~~GH~~P~l~La~~La~rGh~VT~it 43 (192)
.|.++-+-..|=-.-+..|++.|.++|++|.++-
T Consensus 2 vv~VvG~~~sGKTTl~~~Li~~l~~~g~~v~~ik 35 (140)
T PF03205_consen 2 VVQVVGPKNSGKTTLIRKLINELKRRGYRVAVIK 35 (140)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHhHcCCceEEEE
Confidence 4667777777888889999999999999998664
No 251
>TIGR01501 MthylAspMutase methylaspartate mutase, S subunit. This model represents the S (sigma) subunit of methylaspartate mutase (glutamate mutase), a cobalamin-dependent enzyme that catalyzes the first step in a pathway of glutamate fermentation.
Probab=30.28 E-value=1.5e+02 Score=21.70 Aligned_cols=45 Identities=11% Similarity=0.115 Sum_probs=36.4
Q ss_pred ceEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEcCCchhhhhhh
Q 029508 9 AHAVCVPYPAQGHVSPMMQVAKLLHSKGFHITFVNTEFNHRRLIR 53 (192)
Q Consensus 9 ~~Il~~p~p~~GH~~P~l~La~~La~rGh~VT~it~~~~~~~~~~ 53 (192)
.+|++-..-+-+|-.=-.-++..|.++|++|..+...-..+.+.+
T Consensus 2 ~~vvigtv~~D~HdiGk~iv~~~l~~~GfeVi~LG~~v~~e~~v~ 46 (134)
T TIGR01501 2 KTIVLGVIGSDCHAVGNKILDHAFTNAGFNVVNLGVLSPQEEFIK 46 (134)
T ss_pred CeEEEEEecCChhhHhHHHHHHHHHHCCCEEEECCCCCCHHHHHH
Confidence 477888878889998888888899999999999988766555543
No 252
>PRK04148 hypothetical protein; Provisional
Probab=30.27 E-value=57 Score=23.93 Aligned_cols=33 Identities=21% Similarity=0.255 Sum_probs=23.0
Q ss_pred ceEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEcCCch
Q 029508 9 AHAVCVPYPAQGHVSPMMQVAKLLHSKGFHITFVNTEFN 47 (192)
Q Consensus 9 ~~Il~~p~p~~GH~~P~l~La~~La~rGh~VT~it~~~~ 47 (192)
.+++.+... .| ..+|+.|++.||+|+.+=....
T Consensus 18 ~kileIG~G-fG-----~~vA~~L~~~G~~ViaIDi~~~ 50 (134)
T PRK04148 18 KKIVELGIG-FY-----FKVAKKLKESGFDVIVIDINEK 50 (134)
T ss_pred CEEEEEEec-CC-----HHHHHHHHHCCCEEEEEECCHH
Confidence 466666543 33 3468899999999999865544
No 253
>PF01266 DAO: FAD dependent oxidoreductase; InterPro: IPR006076 This entry includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase (1.1.99.5 from EC), Sarcosine oxidase beta subunit (1.5.3.1 from EC), D-alanine oxidase (1.4.99.1 from EC), D-aspartate oxidase (1.4.3.1 from EC). D-amino acid oxidase (1.4.3.3 from EC) (DAMOX or DAO) is an FAD flavoenzyme that catalyzes the oxidation of neutral and basic D-amino acids into their corresponding keto acids. DAOs have been characterised and sequenced in fungi and vertebrates where they are known to be located in the peroxisomes. D-aspartate oxidase (1.4.3.1 from EC) (DASOX) [] is an enzyme, structurally related to DAO, which catalyzes the same reaction but is active only toward dicarboxylic D-amino acids. In DAO, a conserved histidine has been shown [] to be important for the enzyme's catalytic activity.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2RGO_A 3NYE_A 3NYF_A 3NYC_A 3SM8_A 3SGL_A 3PVC_A 3DME_A 2GAH_B 3NLC_A ....
Probab=30.17 E-value=53 Score=26.76 Aligned_cols=21 Identities=19% Similarity=0.292 Sum_probs=17.9
Q ss_pred HHHHHHHHHhCCCeEEEEcCC
Q 029508 25 MMQVAKLLHSKGFHITFVNTE 45 (192)
Q Consensus 25 ~l~La~~La~rGh~VT~it~~ 45 (192)
-+..|..|+++|++|+++-..
T Consensus 11 G~~~A~~La~~G~~V~l~e~~ 31 (358)
T PF01266_consen 11 GLSTAYELARRGHSVTLLERG 31 (358)
T ss_dssp HHHHHHHHHHTTSEEEEEESS
T ss_pred HHHHHHHHHHCCCeEEEEeec
Confidence 467889999999999999665
No 254
>cd02037 MRP-like MRP (Multiple Resistance and pH adaptation) is a homologue of the Fer4_NifH superfamily. Like the other members of the superfamily, MRP contains a ATP-binding domain at the N-termini. It is found in bacteria as a membrane-spanning protein and functions as a Na+/H+ antiporter.
Probab=30.16 E-value=1.1e+02 Score=22.47 Aligned_cols=30 Identities=13% Similarity=0.352 Sum_probs=25.6
Q ss_pred CCccChHHHHHHHHHHHhCCCeEEEEcCCc
Q 029508 17 PAQGHVSPMMQVAKLLHSKGFHITFVNTEF 46 (192)
Q Consensus 17 p~~GH~~P~l~La~~La~rGh~VT~it~~~ 46 (192)
+|.|=-.-...||..|+++|++|.++-.+.
T Consensus 9 gG~GKTt~a~~LA~~la~~g~~vllvD~D~ 38 (169)
T cd02037 9 GGVGKSTVAVNLALALAKLGYKVGLLDADI 38 (169)
T ss_pred CcCChhHHHHHHHHHHHHcCCcEEEEeCCC
Confidence 677888889999999999999999986553
No 255
>cd03792 GT1_Trehalose_phosphorylase Trehalose phosphorylase (TP) reversibly catalyzes trehalose synthesis and degradation from alpha-glucose-1-phosphate (alpha-Glc-1-P) and glucose. The catalyzing activity includes the phosphorolysis of trehalose, which produce alpha-Glc-1-P and glucose, and the subsequent synthesis of trehalose. This family is most closely related to the GT1 family of glycosyltransferases.
Probab=30.07 E-value=78 Score=26.44 Aligned_cols=28 Identities=11% Similarity=0.137 Sum_probs=22.9
Q ss_pred ccChHHHHHHHHHHHhCCCeEEEEcCCc
Q 029508 19 QGHVSPMMQVAKLLHSKGFHITFVNTEF 46 (192)
Q Consensus 19 ~GH~~P~l~La~~La~rGh~VT~it~~~ 46 (192)
-|=-.-...+++.|.+.||+|++++...
T Consensus 12 GGv~~~~~~l~~~l~~~g~~v~~~~~~~ 39 (372)
T cd03792 12 GGVAEILHSLVPLMRDLGVDTRWEVIKG 39 (372)
T ss_pred CcHHHHHHHHHHHHHHcCCCceEEecCC
Confidence 3555667899999999999999998644
No 256
>COG4081 Uncharacterized protein conserved in archaea [Function unknown]
Probab=30.07 E-value=1.1e+02 Score=22.51 Aligned_cols=37 Identities=24% Similarity=0.398 Sum_probs=27.0
Q ss_pred EEcCCCc-cChHHHHHHHHHHHhCCCeEEEEcCCchhh
Q 029508 13 CVPYPAQ-GHVSPMMQVAKLLHSKGFHITFVNTEFNHR 49 (192)
Q Consensus 13 ~~p~p~~-GH~~P~l~La~~La~rGh~VT~it~~~~~~ 49 (192)
++..|-. -.+-..+-++.+|..+|++||+..++...+
T Consensus 8 ~lGCPeiP~qissaiYls~klkkkgf~v~VaateAa~k 45 (148)
T COG4081 8 SLGCPEIPPQISSAIYLSHKLKKKGFDVTVAATEAALK 45 (148)
T ss_pred EecCCCCCccchHHHHHHHHhhccCccEEEecCHhhhe
Confidence 4444443 344557889999999999999998876543
No 257
>TIGR03087 stp1 sugar transferase, PEP-CTERM/EpsH1 system associated. Members of this family include a match to the pfam00534 Glycosyl transferases group 1 domain. Nearly all are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria. In particular, these transferases are found proximal to a particular variant of exosortase, EpsH1, which appears to travel with a conserved group of genes summarized by Genome Property GenProp0652. The nature of the sugar transferase reaction catalyzed by members of this clade is unknown and may conceivably be variable with respect to substrate by species, but we hypothesize a conserved substrate.
Probab=30.03 E-value=44 Score=28.39 Aligned_cols=32 Identities=16% Similarity=0.349 Sum_probs=25.8
Q ss_pred EcCCCc-cChHHHHHHHHHHHhCCCeEEEEcCCc
Q 029508 14 VPYPAQ-GHVSPMMQVAKLLHSKGFHITFVNTEF 46 (192)
Q Consensus 14 ~p~p~~-GH~~P~l~La~~La~rGh~VT~it~~~ 46 (192)
+|+|-. |.-.=+.+++++|+++ |+||+++-..
T Consensus 8 ~P~P~~~G~~~r~~~~~~~L~~~-~~v~l~~~~~ 40 (397)
T TIGR03087 8 IPYPPNKGDKIRSFHLLRHLAAR-HRVHLGTFVD 40 (397)
T ss_pred CCCCCCCCCcEeHHHHHHHHHhc-CcEEEEEeCC
Confidence 566554 8888899999999776 8999998653
No 258
>KOG1838 consensus Alpha/beta hydrolase [General function prediction only]
Probab=30.00 E-value=1.6e+02 Score=25.80 Aligned_cols=40 Identities=18% Similarity=0.231 Sum_probs=32.7
Q ss_pred CCceEEEEcC-CCccChHHHHHHHHHHHhCCCeEEEEcCCc
Q 029508 7 RKAHAVCVPY-PAQGHVSPMMQVAKLLHSKGFHITFVNTEF 46 (192)
Q Consensus 7 ~~~~Il~~p~-p~~GH~~P~l~La~~La~rGh~VT~it~~~ 46 (192)
..+.++++|. .+.||=.=+++++.++.++|.++.+++.-.
T Consensus 124 ~~P~vvilpGltg~S~~~YVr~lv~~a~~~G~r~VVfN~RG 164 (409)
T KOG1838|consen 124 TDPIVVILPGLTGGSHESYVRHLVHEAQRKGYRVVVFNHRG 164 (409)
T ss_pred CCcEEEEecCCCCCChhHHHHHHHHHHHhCCcEEEEECCCC
Confidence 3577888887 455787778999999999999999998765
No 259
>PRK12921 2-dehydropantoate 2-reductase; Provisional
Probab=29.95 E-value=53 Score=26.78 Aligned_cols=31 Identities=23% Similarity=0.178 Sum_probs=22.5
Q ss_pred eEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEcCC
Q 029508 10 HAVCVPYPAQGHVSPMMQVAKLLHSKGFHITFVNTE 45 (192)
Q Consensus 10 ~Il~~p~p~~GH~~P~l~La~~La~rGh~VT~it~~ 45 (192)
+|+++...+.| ..+|..|+++||+|+++.-.
T Consensus 2 kI~IiG~G~iG-----~~~a~~L~~~g~~V~~~~r~ 32 (305)
T PRK12921 2 RIAVVGAGAVG-----GTFGGRLLEAGRDVTFLVRP 32 (305)
T ss_pred eEEEECCCHHH-----HHHHHHHHHCCCceEEEecH
Confidence 56666444333 45788999999999999873
No 260
>PRK13011 formyltetrahydrofolate deformylase; Reviewed
Probab=29.86 E-value=1.4e+02 Score=24.73 Aligned_cols=44 Identities=20% Similarity=-0.021 Sum_probs=29.9
Q ss_pred HHHHHHHHHhhcCCCCCCCCeEEEEeCCCcchHHHHHHHhCCceEEec
Q 029508 99 APFLELLGKLNSSADDQVPPVTCVVSDGIMGFGRKAAQMLGILDIQFW 146 (192)
Q Consensus 99 ~~~~~ll~~l~~~~~~~~~~~d~vI~D~~~~~~~~vA~~lgIP~i~~~ 146 (192)
..++++++......- ...+.+||+|- ..+..+|+++|||++.+.
T Consensus 101 ~nl~al~~~~~~~~~--~~~i~~visn~--~~~~~lA~~~gIp~~~~~ 144 (286)
T PRK13011 101 HCLNDLLYRWRIGEL--PMDIVGVVSNH--PDLEPLAAWHGIPFHHFP 144 (286)
T ss_pred ccHHHHHHHHHcCCC--CcEEEEEEECC--ccHHHHHHHhCCCEEEeC
Confidence 457888876543100 13577888874 346667999999999874
No 261
>PF05728 UPF0227: Uncharacterised protein family (UPF0227); InterPro: IPR008886 Despite being classed as uncharacterised proteins, the members of this family are almost certainly enzymes in that they contain a domain distantly related to IPR000073 from INTERPRO. One of the members of this family YqiA has been shown to be a esterase []. Other members, which include the Escherichia coli (strain K12) YcfP protein are uncharacterised.
Probab=29.81 E-value=1.4e+02 Score=23.00 Aligned_cols=44 Identities=11% Similarity=0.145 Sum_probs=30.0
Q ss_pred HHHHHHHhhcCCCCCCCCeEEEEeCCCc-chHHHHHHHhCCceEEecCCchH
Q 029508 101 FLELLGKLNSSADDQVPPVTCVVSDGIM-GFGRKAAQMLGILDIQFWTASAC 151 (192)
Q Consensus 101 ~~~ll~~l~~~~~~~~~~~d~vI~D~~~-~~~~~vA~~lgIP~i~~~t~~a~ 151 (192)
+++++++... +..++|--.+- .|+..+|+++|+|.+.+.+.-..
T Consensus 49 l~~~i~~~~~-------~~~~liGSSlGG~~A~~La~~~~~~avLiNPav~p 93 (187)
T PF05728_consen 49 LEQLIEELKP-------ENVVLIGSSLGGFYATYLAERYGLPAVLINPAVRP 93 (187)
T ss_pred HHHHHHhCCC-------CCeEEEEEChHHHHHHHHHHHhCCCEEEEcCCCCH
Confidence 4556665432 22466666665 45678999999999999886644
No 262
>PRK13604 luxD acyl transferase; Provisional
Probab=29.77 E-value=1.5e+02 Score=24.93 Aligned_cols=33 Identities=18% Similarity=0.318 Sum_probs=24.5
Q ss_pred eEEEEcCCCccChHHHHHHHHHHHhCCCeEEEE
Q 029508 10 HAVCVPYPAQGHVSPMMQVAKLLHSKGFHITFV 42 (192)
Q Consensus 10 ~Il~~p~p~~GH~~P~l~La~~La~rGh~VT~i 42 (192)
..+++.....++..-+..+|+.|+++|..|..+
T Consensus 38 ~~vIi~HGf~~~~~~~~~~A~~La~~G~~vLrf 70 (307)
T PRK13604 38 NTILIASGFARRMDHFAGLAEYLSSNGFHVIRY 70 (307)
T ss_pred CEEEEeCCCCCChHHHHHHHHHHHHCCCEEEEe
Confidence 445555444556666999999999999887765
No 263
>PRK08939 primosomal protein DnaI; Reviewed
Probab=29.62 E-value=95 Score=25.93 Aligned_cols=44 Identities=18% Similarity=0.046 Sum_probs=34.2
Q ss_pred CceEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEcCCchhhhh
Q 029508 8 KAHAVCVPYPAQGHVSPMMQVAKLLHSKGFHITFVNTEFNHRRL 51 (192)
Q Consensus 8 ~~~Il~~p~p~~GH~~P~l~La~~La~rGh~VT~it~~~~~~~~ 51 (192)
...++++..+|.|=-.-+..+|+.|+++|..|++++.+.....+
T Consensus 156 ~~gl~L~G~~G~GKThLa~Aia~~l~~~g~~v~~~~~~~l~~~l 199 (306)
T PRK08939 156 VKGLYLYGDFGVGKSYLLAAIANELAKKGVSSTLLHFPEFIREL 199 (306)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEEHHHHHHHH
Confidence 34688888888886556789999999999999999876554434
No 264
>PRK00090 bioD dithiobiotin synthetase; Reviewed
Probab=29.54 E-value=2.6e+02 Score=21.49 Aligned_cols=28 Identities=14% Similarity=0.204 Sum_probs=23.9
Q ss_pred CCCccChHHHHHHHHHHHhCCCeEEEEc
Q 029508 16 YPAQGHVSPMMQVAKLLHSKGFHITFVN 43 (192)
Q Consensus 16 ~p~~GH~~P~l~La~~La~rGh~VT~it 43 (192)
-++.|--.-.+.|++.|.++|.+|-++-
T Consensus 8 ~t~~GKT~vs~~L~~~l~~~g~~v~~~K 35 (222)
T PRK00090 8 DTDVGKTVVTAALAQALREAGYSVAGYK 35 (222)
T ss_pred CCCcCHHHHHHHHHHHHHHcCCceEEEe
Confidence 3566888889999999999999998864
No 265
>COG1435 Tdk Thymidine kinase [Nucleotide transport and metabolism]
Probab=29.53 E-value=2.8e+02 Score=21.84 Aligned_cols=39 Identities=10% Similarity=0.196 Sum_probs=30.7
Q ss_pred CceEEEEcCCCc-cChHHHHHHHHHHHhCCCeEEEEcCCc
Q 029508 8 KAHAVCVPYPAQ-GHVSPMMQVAKLLHSKGFHITFVNTEF 46 (192)
Q Consensus 8 ~~~Il~~p~p~~-GH~~P~l~La~~La~rGh~VT~it~~~ 46 (192)
+..+-++..|.. |--.-+++-++....+|-+|.++++.-
T Consensus 3 ~g~l~~i~gpM~SGKT~eLl~r~~~~~~~g~~v~vfkp~i 42 (201)
T COG1435 3 MGWLEFIYGPMFSGKTEELLRRARRYKEAGMKVLVFKPAI 42 (201)
T ss_pred eEEEEEEEccCcCcchHHHHHHHHHHHHcCCeEEEEeccc
Confidence 345666666554 888889999999999999999998764
No 266
>PRK05802 hypothetical protein; Provisional
Probab=29.02 E-value=73 Score=26.74 Aligned_cols=38 Identities=21% Similarity=0.249 Sum_probs=28.5
Q ss_pred ceEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEcCCchh
Q 029508 9 AHAVCVPYPAQGHVSPMMQVAKLLHSKGFHITFVNTEFNH 48 (192)
Q Consensus 9 ~~Il~~p~p~~GH~~P~l~La~~La~rGh~VT~it~~~~~ 48 (192)
.+++++. .|.| +.|++.+++.|.++|.+|+++-.....
T Consensus 173 ~~~llIa-GGiG-IaPl~~l~~~l~~~~~~v~li~g~r~~ 210 (320)
T PRK05802 173 GKSLVIA-RGIG-QAPGVPVIKKLYSNGNKIIVIIDKGPF 210 (320)
T ss_pred CeEEEEE-eEEe-HHHHHHHHHHHHHcCCcEEEEEeCCCH
Confidence 3666665 3344 689999999999999899988765443
No 267
>cd00395 Tyr_Trp_RS_core catalytic core domain of tyrosinyl-tRNA and tryptophanyl-tRNA synthetase. Tyrosinyl-tRNA synthetase (TyrRS)/Tryptophanyl-tRNA synthetase (TrpRS) catalytic core domain. These enzymes attach Tyr or Trp, respectively, to the appropriate tRNA. These class I enzymes are homodimers, which aminoacylate the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the class I characteristic HIGH and KMSKS motifs, which are involved in ATP binding.
Probab=29.01 E-value=51 Score=27.05 Aligned_cols=25 Identities=16% Similarity=0.282 Sum_probs=20.6
Q ss_pred cChHHHHHHHHHHHhCCCeEEEEcCC
Q 029508 20 GHVSPMMQVAKLLHSKGFHITFVNTE 45 (192)
Q Consensus 20 GH~~P~l~La~~La~rGh~VT~it~~ 45 (192)
||+.| +...+.|.+.||++.++..+
T Consensus 16 Gh~~~-l~~~~~lq~~g~~~~~~I~d 40 (273)
T cd00395 16 GHLIG-LLTFRRFQHAGHRPIFLIGG 40 (273)
T ss_pred HHHHH-HHHHHHHHHCCCCEEEEEec
Confidence 99999 77777888889999887653
No 268
>PRK06522 2-dehydropantoate 2-reductase; Reviewed
Probab=28.99 E-value=74 Score=25.82 Aligned_cols=31 Identities=16% Similarity=0.225 Sum_probs=22.3
Q ss_pred eEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEcCC
Q 029508 10 HAVCVPYPAQGHVSPMMQVAKLLHSKGFHITFVNTE 45 (192)
Q Consensus 10 ~Il~~p~p~~GH~~P~l~La~~La~rGh~VT~it~~ 45 (192)
+|+++-. |.+- ..+|..|+++||+|+++...
T Consensus 2 ~I~IiG~---G~~G--~~~a~~L~~~g~~V~~~~r~ 32 (304)
T PRK06522 2 KIAILGA---GAIG--GLFGAALAQAGHDVTLVARR 32 (304)
T ss_pred EEEEECC---CHHH--HHHHHHHHhCCCeEEEEECC
Confidence 4555553 4332 56888999999999999863
No 269
>TIGR00725 conserved hypothetical protein, DprA/Smf-related, family 1. This model represents one branch of a subfamily of uncharacterized proteins. Both PSI-BLAST and weak hits by this model show a low level of similarity and suggest an evolutionary relationship of the subfamily to the DprA/Smf family of DNA-processing proteins involved in chromosomal transformation with foreign DNA. Both Aquifex aeolicus and Mycobacterium leprae have one member in each of two branches of this subfamily, suggesting the branches may have distinct functions. This family is one of several families within the scope of PFAM model pfam03641, several members of which are annotated as lysine decarboxylases. That larger family, and the branch described by this model, have a well-conserved motif PGGXGTXXE.
Probab=28.98 E-value=99 Score=23.13 Aligned_cols=33 Identities=12% Similarity=0.073 Sum_probs=21.0
Q ss_pred ceEEEEcCC--CccChHHHHHHHHHHHhCCCeEEE
Q 029508 9 AHAVCVPYP--AQGHVSPMMQVAKLLHSKGFHITF 41 (192)
Q Consensus 9 ~~Il~~p~p--~~GH~~P~l~La~~La~rGh~VT~ 41 (192)
.+|.++..- ..-+..-..+|++.|+++|+.|..
T Consensus 2 ~~I~V~gss~~~~~~~~~A~~lg~~La~~g~~lv~ 36 (159)
T TIGR00725 2 VQIGVIGSSNKSEELYEIAYRLGKELAKKGHILIN 36 (159)
T ss_pred eEEEEEeCCCCChHHHHHHHHHHHHHHHCCCEEEc
Confidence 356666543 223455677888999999984433
No 270
>KOG1014 consensus 17 beta-hydroxysteroid dehydrogenase type 3, HSD17B3 [Lipid transport and metabolism]
Probab=28.96 E-value=54 Score=27.62 Aligned_cols=32 Identities=19% Similarity=0.291 Sum_probs=22.8
Q ss_pred eEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEcC
Q 029508 10 HAVCVPYPAQGHVSPMMQVAKLLHSKGFHITFVNT 44 (192)
Q Consensus 10 ~Il~~p~p~~GH~~P~l~La~~La~rGh~VT~it~ 44 (192)
.-++++...-|= --+.|++||.||.+|.++.=
T Consensus 50 ~WAVVTGaTDGI---GKayA~eLAkrG~nvvLIsR 81 (312)
T KOG1014|consen 50 SWAVVTGATDGI---GKAYARELAKRGFNVVLISR 81 (312)
T ss_pred CEEEEECCCCcc---hHHHHHHHHHcCCEEEEEeC
Confidence 556666544432 35789999999999887763
No 271
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=28.87 E-value=1.2e+02 Score=23.31 Aligned_cols=42 Identities=17% Similarity=0.216 Sum_probs=36.0
Q ss_pred CCceEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEcCCchh
Q 029508 7 RKAHAVCVPYPAQGHVSPMMQVAKLLHSKGFHITFVNTEFNH 48 (192)
Q Consensus 7 ~~~~Il~~p~p~~GH~~P~l~La~~La~rGh~VT~it~~~~~ 48 (192)
...+|.+.-.||.|--.-.+.++..|.++|++|-=+.++.-.
T Consensus 4 ~~mki~ITG~PGvGKtTl~~ki~e~L~~~g~kvgGf~t~EVR 45 (179)
T COG1618 4 MAMKIFITGRPGVGKTTLVLKIAEKLREKGYKVGGFITPEVR 45 (179)
T ss_pred cceEEEEeCCCCccHHHHHHHHHHHHHhcCceeeeEEeeeee
Confidence 467899999999999999999999999999998776666543
No 272
>PLN02331 phosphoribosylglycinamide formyltransferase
Probab=28.76 E-value=1.7e+02 Score=22.93 Aligned_cols=46 Identities=17% Similarity=0.038 Sum_probs=29.8
Q ss_pred HHHHHHHHhhcCCCCCCCCeEEEEeCCCcchHHHHHHHhCCceEEecC
Q 029508 100 PFLELLGKLNSSADDQVPPVTCVVSDGIMGFGRKAAQMLGILDIQFWT 147 (192)
Q Consensus 100 ~~~~ll~~l~~~~~~~~~~~d~vI~D~~~~~~~~vA~~lgIP~i~~~t 147 (192)
.++.+++..++. +-...+-+||+|--.-.+...|+++|||+..+..
T Consensus 12 n~~al~~~~~~~--~l~~~i~~visn~~~~~~~~~A~~~gIp~~~~~~ 57 (207)
T PLN02331 12 NFRAIHDACLDG--RVNGDVVVVVTNKPGCGGAEYARENGIPVLVYPK 57 (207)
T ss_pred hHHHHHHHHHcC--CCCeEEEEEEEeCCCChHHHHHHHhCCCEEEecc
Confidence 456666655431 0012577888885444568899999999987654
No 273
>cd01965 Nitrogenase_MoFe_beta_like Nitrogenase_MoFe_beta_like: Nitrogenase MoFe protein, beta subunit_like. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen (N2) to ammonia. This group contains the beta subunits of component 1 of the three known genetically distinct types of nitrogenase systems: a molybdenum-dependent nitrogenase (Mo-nitrogenase), a vanadium-dependent nitrogenase (V-nitrogenase), and an iron-only nitrogenase (Fe-nitrogenase). These nitrogenase systems consist of component 1 (MoFe protein, VFe protein or, FeFe protein respectively) and, component 2 (Fe protein). The most widespread and best characterized of these systems is the Mo-nitrogenase. MoFe is an alpha2beta2 tetramer, the alternative nitrogenases are alpha2beta2delta2 hexamers having alpha and beta subunits similar to the alpha and beta subunits of MoFe. For MoFe, each alphabeta pair contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (Fe
Probab=28.68 E-value=1e+02 Score=26.91 Aligned_cols=26 Identities=31% Similarity=0.497 Sum_probs=21.5
Q ss_pred CCeEEEEeCCCcchHHHHHHHhCCceEEe
Q 029508 117 PPVTCVVSDGIMGFGRKAAQMLGILDIQF 145 (192)
Q Consensus 117 ~~~d~vI~D~~~~~~~~vA~~lgIP~i~~ 145 (192)
.++|++|.+. +...+|+++|+|.+.+
T Consensus 370 ~~pdliig~~---~~~~~a~~~~ip~i~~ 395 (428)
T cd01965 370 EPVDLLIGNS---HGRYLARDLGIPLVRV 395 (428)
T ss_pred cCCCEEEECc---hhHHHHHhcCCCEEEe
Confidence 4799999997 4578999999999854
No 274
>PTZ00445 p36-lilke protein; Provisional
Probab=28.56 E-value=61 Score=25.85 Aligned_cols=28 Identities=21% Similarity=0.290 Sum_probs=24.0
Q ss_pred cChHH-HHHHHHHHHhCCCeEEEEcCCch
Q 029508 20 GHVSP-MMQVAKLLHSKGFHITFVNTEFN 47 (192)
Q Consensus 20 GH~~P-~l~La~~La~rGh~VT~it~~~~ 47 (192)
+|..| +..+.++|.++|..|+++|-...
T Consensus 74 ~~~tpefk~~~~~l~~~~I~v~VVTfSd~ 102 (219)
T PTZ00445 74 TSVTPDFKILGKRLKNSNIKISVVTFSDK 102 (219)
T ss_pred ccCCHHHHHHHHHHHHCCCeEEEEEccch
Confidence 56777 88999999999999999997654
No 275
>TIGR01278 DPOR_BchB light-independent protochlorophyllide reductase, B subunit. This enzyme describes the B subunit of the dark form protochlorophyllide reductase, a nitrogenase-like enzyme. This subunit shows homology to the nitrogenase molybdenum-iron protein. It catalyzes a step in bacteriochlorophyll biosynthesis.
Probab=28.54 E-value=97 Score=27.85 Aligned_cols=27 Identities=19% Similarity=0.028 Sum_probs=22.2
Q ss_pred CCeEEEEeCCCcchHHHHHHHhCCceEEec
Q 029508 117 PPVTCVVSDGIMGFGRKAAQMLGILDIQFW 146 (192)
Q Consensus 117 ~~~d~vI~D~~~~~~~~vA~~lgIP~i~~~ 146 (192)
.+||+||.+. +...+|+++|||++.+.
T Consensus 363 ~~pdliiG~~---~er~~a~~lgip~~~i~ 389 (511)
T TIGR01278 363 LEPELVLGTQ---MERHSAKRLDIPCGVIS 389 (511)
T ss_pred cCCCEEEECh---HHHHHHHHcCCCEEEec
Confidence 4689999887 57788999999998653
No 276
>PRK12342 hypothetical protein; Provisional
Probab=28.47 E-value=99 Score=25.22 Aligned_cols=31 Identities=10% Similarity=0.012 Sum_probs=23.0
Q ss_pred CeEEEEeCCCc-ch-----HHHHHHHhCCceEEecCC
Q 029508 118 PVTCVVSDGIM-GF-----GRKAAQMLGILDIQFWTA 148 (192)
Q Consensus 118 ~~d~vI~D~~~-~~-----~~~vA~~lgIP~i~~~t~ 148 (192)
.||+|++---. .. +..+|+.||+|++.+-..
T Consensus 109 ~~DLVl~G~~s~D~~tgqvg~~lA~~Lg~P~vt~v~~ 145 (254)
T PRK12342 109 GFDLLLFGEGSGDLYAQQVGLLLGELLQLPVINAVSK 145 (254)
T ss_pred CCCEEEEcCCcccCCCCCHHHHHHHHhCCCcEeeEEE
Confidence 59999985433 11 579999999999876543
No 277
>PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=28.46 E-value=71 Score=26.42 Aligned_cols=33 Identities=9% Similarity=-0.010 Sum_probs=24.4
Q ss_pred CceEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEcCC
Q 029508 8 KAHAVCVPYPAQGHVSPMMQVAKLLHSKGFHITFVNTE 45 (192)
Q Consensus 8 ~~~Il~~p~p~~GH~~P~l~La~~La~rGh~VT~it~~ 45 (192)
+.+|.++-.. . --..+|+.|+++||+|+++...
T Consensus 4 ~m~I~iiG~G---~--~G~~lA~~l~~~G~~V~~~~r~ 36 (308)
T PRK14619 4 PKTIAILGAG---A--WGSTLAGLASANGHRVRVWSRR 36 (308)
T ss_pred CCEEEEECcc---H--HHHHHHHHHHHCCCEEEEEeCC
Confidence 3467777543 3 3457899999999999998754
No 278
>PRK06835 DNA replication protein DnaC; Validated
Probab=28.43 E-value=88 Score=26.47 Aligned_cols=43 Identities=14% Similarity=0.081 Sum_probs=33.6
Q ss_pred ceEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEcCCchhhhh
Q 029508 9 AHAVCVPYPAQGHVSPMMQVAKLLHSKGFHITFVNTEFNHRRL 51 (192)
Q Consensus 9 ~~Il~~p~p~~GH~~P~l~La~~La~rGh~VT~it~~~~~~~~ 51 (192)
..++++..+|.|=-.-+..+|++|..+|+.|.+++.......+
T Consensus 184 ~~Lll~G~~GtGKThLa~aIa~~l~~~g~~V~y~t~~~l~~~l 226 (329)
T PRK06835 184 ENLLFYGNTGTGKTFLSNCIAKELLDRGKSVIYRTADELIEIL 226 (329)
T ss_pred CcEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEEHHHHHHHH
Confidence 5678888888875546778999999999999999886655444
No 279
>cd01424 MGS_CPS_II Methylglyoxal synthase-like domain from type II glutamine-dependent carbamoyl phosphate synthetase (CSP). CSP, a CarA and CarB heterodimer, catalyzes the production of carbamoyl phosphate which is subsequently employed in the metabolic pathways responsible for the synthesis of pyrimidine nucleotides or arginine. The MGS-like domain is the C-terminal domain of CarB and appears to play a regulatory role in CPS function by binding allosteric effector molecules, including UMP and ornithine.
Probab=28.40 E-value=1.7e+02 Score=19.99 Aligned_cols=84 Identities=19% Similarity=0.199 Sum_probs=50.7
Q ss_pred cChHHHHHHHHHHHhCCCeEEEEcCCchhhhhhhccCCCccCCCCCceeEecCCCCCCCCCCCCCCHHHHHHHHHHhCcH
Q 029508 20 GHVSPMMQVAKLLHSKGFHITFVNTEFNHRRLIRSKGPEYVKGLPDFRFETIPDGLPPSDRDATQDVPALSDSIRKNGLA 99 (192)
Q Consensus 20 GH~~P~l~La~~La~rGh~VT~it~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (192)
++-.=++++++.|.+.|+++ +.++...+.+. .. ++....+.. ... ..+
T Consensus 10 ~~k~~~~~~~~~l~~~G~~l--~aT~gT~~~l~-~~---------gi~~~~v~~-~~~-------------------~~~ 57 (110)
T cd01424 10 RDKPEAVEIAKRLAELGFKL--VATEGTAKYLQ-EA---------GIPVEVVNK-VSE-------------------GRP 57 (110)
T ss_pred CcHhHHHHHHHHHHHCCCEE--EEchHHHHHHH-Hc---------CCeEEEEee-cCC-------------------Cch
Confidence 34456889999999999888 45666665552 21 344332211 000 123
Q ss_pred HHHHHHHHhhcCCCCCCCCeEEEEeCCC-------cchHHHHHHHhCCceEE
Q 029508 100 PFLELLGKLNSSADDQVPPVTCVVSDGI-------MGFGRKAAQMLGILDIQ 144 (192)
Q Consensus 100 ~~~~ll~~l~~~~~~~~~~~d~vI~D~~-------~~~~~~vA~~lgIP~i~ 144 (192)
.+.+++++ .++|+||.-.- ..+....|-++|||++.
T Consensus 58 ~i~~~i~~---------~~id~vIn~~~~~~~~~~~~~iRR~Av~~~ipl~T 100 (110)
T cd01424 58 NIVDLIKN---------GEIQLVINTPSGKRAIRDGFSIRRAALEYKVPYFT 100 (110)
T ss_pred hHHHHHHc---------CCeEEEEECCCCCccCccHHHHHHHHHHhCCCEEe
Confidence 34455543 57999998321 23567889999999983
No 280
>PF01949 DUF99: Protein of unknown function DUF99; InterPro: IPR002802 The function of the archaebacterial proteins in this family is unknown.; PDB: 2QH9_A.
Probab=28.36 E-value=1.1e+02 Score=23.66 Aligned_cols=35 Identities=20% Similarity=0.194 Sum_probs=22.0
Q ss_pred CCeEEEEeCCCc-ch-----HHHHHHHhCCceEEecCCchH
Q 029508 117 PPVTCVVSDGIM-GF-----GRKAAQMLGILDIQFWTASAC 151 (192)
Q Consensus 117 ~~~d~vI~D~~~-~~-----~~~vA~~lgIP~i~~~t~~a~ 151 (192)
+...+|+.|... .| ...+.++.|+|++++.--...
T Consensus 63 ~~i~~v~LdGit~agFNiiD~~~l~~~tg~PVI~V~~~~p~ 103 (187)
T PF01949_consen 63 PDIRVVMLDGITFAGFNIIDIERLYEETGLPVIVVMRKEPN 103 (187)
T ss_dssp TTEEEEEESSSEETTTEE--HHHHHHHH---EEEEESS---
T ss_pred CcceEEEECCEeEEeeEEecHHHHHHHHCCCEEEEEEeCCC
Confidence 468999999754 33 357889999999988765544
No 281
>COG0451 WcaG Nucleoside-diphosphate-sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]
Probab=28.33 E-value=96 Score=24.88 Aligned_cols=26 Identities=12% Similarity=0.203 Sum_probs=21.0
Q ss_pred ccChHHHHHHHHHHHhCCCeEEEEcCCc
Q 029508 19 QGHVSPMMQVAKLLHSKGFHITFVNTEF 46 (192)
Q Consensus 19 ~GH~~P~l~La~~La~rGh~VT~it~~~ 46 (192)
.|-+- ..|+++|.++||+|..+....
T Consensus 9 tGfiG--~~l~~~L~~~g~~V~~~~r~~ 34 (314)
T COG0451 9 AGFIG--SHLVERLLAAGHDVRGLDRLR 34 (314)
T ss_pred cccHH--HHHHHHHHhCCCeEEEEeCCC
Confidence 45543 789999999999999998644
No 282
>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=28.29 E-value=1e+02 Score=26.77 Aligned_cols=33 Identities=21% Similarity=0.349 Sum_probs=24.2
Q ss_pred ceEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEcCCc
Q 029508 9 AHAVCVPYPAQGHVSPMMQVAKLLHSKGFHITFVNTEF 46 (192)
Q Consensus 9 ~~Il~~p~p~~GH~~P~l~La~~La~rGh~VT~it~~~ 46 (192)
.+++++ |.|. .- +.+|+.|+++|++|+++....
T Consensus 6 k~v~ii---G~g~-~G-~~~A~~l~~~G~~V~~~d~~~ 38 (450)
T PRK14106 6 KKVLVV---GAGV-SG-LALAKFLKKLGAKVILTDEKE 38 (450)
T ss_pred CEEEEE---CCCH-HH-HHHHHHHHHCCCEEEEEeCCc
Confidence 355555 4555 34 499999999999999987643
No 283
>PF01316 Arg_repressor: Arginine repressor, DNA binding domain; InterPro: IPR020900 The arginine dihydrolase (AD) pathway is found in many prokaryotes and some primitive eukaryotes, an example of the latter being Giardia lamblia (Giardia intestinalis) []. The three-enzyme anaerobic pathway breaks down L-arginine to form 1 mol of ATP, carbon dioxide and ammonia. In simpler bacteria, the first enzyme, arginine deiminase, can account for up to 10% of total cell protein []. Most prokaryotic arginine deiminase pathways are under the control of a repressor gene, termed ArgR []. This is a negative regulator, and will only release the arginine deiminase operon for expression in the presence of arginine []. The crystal structure of apo-ArgR from Bacillus stearothermophilus has been determined to 2.5A by means of X-ray crystallography []. The protein exists as a hexamer of identical subunits, and is shown to have six DNA-binding domains, clustered around a central oligomeric core when bound to arginine. It predominantly interacts with A.T residues in ARG boxes. This hexameric protein binds DNA at its N terminus to repress arginine biosyntheis or activate arginine catabolism. Some species have several ArgR paralogs. In a neighbour-joining tree, some of these paralogous sequences show long branches and differ significantly from the well-conserved C-terminal region. ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0006525 arginine metabolic process; PDB: 1AOY_A 3V4G_A 3LAJ_D 3FHZ_A 3LAP_B 3ERE_D 2P5L_C 1F9N_D 2P5K_A 1B4A_A ....
Probab=28.26 E-value=36 Score=21.98 Aligned_cols=24 Identities=17% Similarity=0.310 Sum_probs=15.9
Q ss_pred HHHHHHHHHHhCCCeEEEEcCCch
Q 029508 24 PMMQVAKLLHSKGFHITFVNTEFN 47 (192)
Q Consensus 24 P~l~La~~La~rGh~VT~it~~~~ 47 (192)
--.+|+..|.++|++||=.|....
T Consensus 21 sQ~eL~~~L~~~Gi~vTQaTiSRD 44 (70)
T PF01316_consen 21 SQEELVELLEEEGIEVTQATISRD 44 (70)
T ss_dssp SHHHHHHHHHHTT-T--HHHHHHH
T ss_pred CHHHHHHHHHHcCCCcchhHHHHH
Confidence 356899999999999887665543
No 284
>cd01141 TroA_d Periplasmic binding protein TroA_d. These proteins are predicted to function as initial receptors in the ABC metal ion uptake in eubacteria and archaea. They belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind their ligands in the cleft between these domains.
Probab=28.25 E-value=98 Score=23.09 Aligned_cols=30 Identities=17% Similarity=-0.021 Sum_probs=20.3
Q ss_pred CeEEEEeCCCcch--HHHHHHHhCCceEEecC
Q 029508 118 PVTCVVSDGIMGF--GRKAAQMLGILDIQFWT 147 (192)
Q Consensus 118 ~~d~vI~D~~~~~--~~~vA~~lgIP~i~~~t 147 (192)
+||+||......- ....-++.|||++.+..
T Consensus 69 ~PDlii~~~~~~~~~~~~~l~~~gIpvv~i~~ 100 (186)
T cd01141 69 KPDLVILYGGFQAQTILDKLEQLGIPVLYVNE 100 (186)
T ss_pred CCCEEEEecCCCchhHHHHHHHcCCCEEEeCC
Confidence 7999988543322 33444678999988853
No 285
>PF00175 NAD_binding_1: Oxidoreductase NAD-binding domain ; InterPro: IPR001433 Bacterial ferredoxin-NADP+ reductase may be bound to the thylakoid membrane or anchored to the thylakoid-bound phycobilisomes. Chloroplast ferredoxin-NADP+ reductase (1.18.1.2 from EC) may play a key role in regulating the relative amounts of cyclic and non-cyclic electron flow to meet the demands of the plant for ATP and reducing power. It is involved in the final step in the linear photosynthetic electron transport chain and has also been implicated in cyclic electron flow around photosystem I where its role would be to return electrons from ferredoxin to the cytochrome B-F complex. This domain is present in a variety of proteins that include, bacterial flavohemoprotein, mammalian NADH-cytochrome b5 reductase, eukaryotic NADPH-cytochrome P450 reductase, nitrate reductase from plants, nitric-oxide synthase, bacterial vanillate demethylase, as well as others.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1UMK_A 1CNE_A 2CND_A 1CNF_A 4FK8_A 4F7D_A 2XNJ_B 1FDR_A 1JB9_A 3LVB_A ....
Probab=28.25 E-value=94 Score=20.71 Aligned_cols=27 Identities=11% Similarity=0.267 Sum_probs=21.1
Q ss_pred hHHHHHHHHHHHh--CCCeEEEEcCCchh
Q 029508 22 VSPMMQVAKLLHS--KGFHITFVNTEFNH 48 (192)
Q Consensus 22 ~~P~l~La~~La~--rGh~VT~it~~~~~ 48 (192)
+.|++.+.+.+.+ .+.+|+++-.....
T Consensus 8 IaP~~s~l~~~~~~~~~~~v~l~~~~r~~ 36 (109)
T PF00175_consen 8 IAPFLSMLRYLLERNDNRKVTLFYGARTP 36 (109)
T ss_dssp GHHHHHHHHHHHHHTCTSEEEEEEEESSG
T ss_pred HHHHHHHHHHHHHhCCCCCEEEEEEEccc
Confidence 6899999999994 56889998654433
No 286
>TIGR00730 conserved hypothetical protein, DprA/Smf-related, family 2. This model represents one branch of a subfamily of proteins of unknown function. Both PSI-BLAST and weak hits by this model show a low level of similarity to and suggest an evolutionary relationship of the subfamily to the DprA/Smf family of DNA-processing proteins involved in chromosomal transformation with foreign DNA. Both Aquifex aeolicus and Mycobacterium leprae have one member in each of two branches of this subfamily, suggesting that the branches may have distinct functions.
Probab=28.14 E-value=1.2e+02 Score=23.27 Aligned_cols=34 Identities=6% Similarity=0.086 Sum_probs=23.9
Q ss_pred eEEEEcCCCc----cChHHHHHHHHHHHhCCCeEEEEc
Q 029508 10 HAVCVPYPAQ----GHVSPMMQVAKLLHSKGFHITFVN 43 (192)
Q Consensus 10 ~Il~~p~p~~----GH~~P~l~La~~La~rGh~VT~it 43 (192)
+|.++..... .+..-..+|++.|+++|+.+..=.
T Consensus 2 ~i~V~~~s~~~~~~~~~~~A~~lG~~la~~g~~lV~GG 39 (178)
T TIGR00730 2 TVCVYCGSSPGGNAAYKELAAELGAYLAGQGWGLVYGG 39 (178)
T ss_pred EEEEECcCCCCCCcHHHHHHHHHHHHHHHCCCEEEECC
Confidence 5677766433 355677888999999998776543
No 287
>PRK03094 hypothetical protein; Provisional
Probab=28.04 E-value=59 Score=21.65 Aligned_cols=21 Identities=24% Similarity=0.547 Sum_probs=17.0
Q ss_pred HHHHHHHHHhCCCeEEEEcCC
Q 029508 25 MMQVAKLLHSKGFHITFVNTE 45 (192)
Q Consensus 25 ~l~La~~La~rGh~VT~it~~ 45 (192)
+..+...|.++|++|.=+...
T Consensus 10 Ls~i~~~L~~~GYeVv~l~~~ 30 (80)
T PRK03094 10 LTDVQQALKQKGYEVVQLRSE 30 (80)
T ss_pred cHHHHHHHHHCCCEEEecCcc
Confidence 457899999999999877553
No 288
>COG0052 RpsB Ribosomal protein S2 [Translation, ribosomal structure and biogenesis]
Probab=28.01 E-value=73 Score=25.98 Aligned_cols=33 Identities=21% Similarity=0.142 Sum_probs=24.1
Q ss_pred CeEE-EEeCCCc-chHHHHHHHhCCceEEecCCch
Q 029508 118 PVTC-VVSDGIM-GFGRKAAQMLGILDIQFWTASA 150 (192)
Q Consensus 118 ~~d~-vI~D~~~-~~~~~vA~~lgIP~i~~~t~~a 150 (192)
-||+ +|.|.-. --+..-|+++|||+|++.-+.+
T Consensus 156 ~Pd~l~ViDp~~e~iAv~EA~klgIPVvAlvDTn~ 190 (252)
T COG0052 156 LPDVLFVIDPRKEKIAVKEANKLGIPVVALVDTNC 190 (252)
T ss_pred CCCEEEEeCCcHhHHHHHHHHHcCCCEEEEecCCC
Confidence 3775 5568866 4466889999999998765543
No 289
>TIGR03088 stp2 sugar transferase, PEP-CTERM/EpsH1 system associated. Members of this family include a match to the pfam00534 Glycosyl transferases group 1 domain. Nearly all are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria. In particular, these transferases are found proximal to a particular variant of exosortase, EpsH1, which appears to travel with a conserved group of genes summarized by Genome Property GenProp0652. The nature of the sugar transferase reaction catalyzed by members of this clade is unknown and may conceivably be variable with respect to substrate by species, but we hypothesize a conserved substrate.
Probab=27.93 E-value=1e+02 Score=25.59 Aligned_cols=37 Identities=14% Similarity=0.096 Sum_probs=27.5
Q ss_pred ceEE-EEcCCCcc-ChHHHHHHHHHHHhCCCeEEEEcCC
Q 029508 9 AHAV-CVPYPAQG-HVSPMMQVAKLLHSKGFHITFVNTE 45 (192)
Q Consensus 9 ~~Il-~~p~p~~G-H~~P~l~La~~La~rGh~VT~it~~ 45 (192)
++|+ +++....| --.-+..|++.|.++|+++++++..
T Consensus 2 ~~il~ii~~~~~GG~e~~~~~l~~~l~~~~~~~~v~~~~ 40 (374)
T TIGR03088 2 PLIVHVVYRFDVGGLENGLVNLINHLPADRYRHAVVALT 40 (374)
T ss_pred ceEEEEeCCCCCCcHHHHHHHHHhhccccccceEEEEcC
Confidence 3555 55555554 4488999999999999999888743
No 290
>TIGR03018 pepcterm_TyrKin exopolysaccharide/PEPCTERM locus tyrosine autokinase. Members of this protein family are related to a known protein-tyrosine autokinase and to numerous homologs from exopolysaccharide biosynthesis region proteins, many of which are designated as chain length determinants. Most members of this family contain a short region, immediately C-terminal to the region modeled here, with an abundance of Tyr residues. These C-terminal tyrosine residues are likely to be autophosphorylation sites. Some members of this family are fusion proteins.
Probab=27.86 E-value=1.7e+02 Score=22.46 Aligned_cols=40 Identities=13% Similarity=0.273 Sum_probs=30.0
Q ss_pred CceEEEEcC--CCccChHHHHHHHHHHHh-CCCeEEEEcCCch
Q 029508 8 KAHAVCVPY--PAQGHVSPMMQVAKLLHS-KGFHITFVNTEFN 47 (192)
Q Consensus 8 ~~~Il~~p~--p~~GH~~P~l~La~~La~-rGh~VT~it~~~~ 47 (192)
+.+++.+.. .|.|=-.-...||+.|++ +|.+|-++-.+..
T Consensus 34 ~~~vi~v~s~kgG~GkSt~a~nLA~~la~~~g~~VLlvD~D~~ 76 (207)
T TIGR03018 34 NNNLIMVTSSLPGEGKSFTAINLAISLAQEYDKTVLLIDADLR 76 (207)
T ss_pred CCeEEEEECCCCCCCHHHHHHHHHHHHHHhcCCeEEEEECCCC
Confidence 445554443 667887889999999996 6999999866543
No 291
>TIGR03453 partition_RepA plasmid partitioning protein RepA. Members of this family are the RepA (or ParA) protein involved in replicon partitioning. All known examples occur in bacterial species with two or more replicons, on a plasmid or the smaller chromosome. Note that an apparent exception may be seen as a pseudomolecule from assembly of an incompletely sequenced genome. Members of this family belong to a larger family that also includes the enzyme cobyrinic acid a,c-diamide synthase, but assignment of that name to members of this family would be in error.
Probab=27.77 E-value=1.2e+02 Score=25.91 Aligned_cols=39 Identities=13% Similarity=0.329 Sum_probs=30.4
Q ss_pred CceEEEEcC--CCccChHHHHHHHHHHHhCCCeEEEEcCCc
Q 029508 8 KAHAVCVPY--PAQGHVSPMMQVAKLLHSKGFHITFVNTEF 46 (192)
Q Consensus 8 ~~~Il~~p~--p~~GH~~P~l~La~~La~rGh~VT~it~~~ 46 (192)
+.+++.+.. +|.|=-.-...||..|+.+|++|-++=.+.
T Consensus 103 ~~~vI~v~n~KGGvGKTT~a~nLA~~La~~G~rVLlID~Dp 143 (387)
T TIGR03453 103 HLQVIAVTNFKGGSGKTTTAAHLAQYLALRGYRVLAIDLDP 143 (387)
T ss_pred CceEEEEEccCCCcCHHHHHHHHHHHHHhcCCCEEEEecCC
Confidence 445554433 677888899999999999999999986654
No 292
>TIGR00288 conserved hypothetical protein TIGR00288. This family of orthologs is restricted to but universal among the completed archaeal genomes so far. Eubacterial proteins showing at least local homology include slr1870 from Synechocystis PCC6803 and two proteins from Aquifex aeolicusr, none of which is characterized.
Probab=27.74 E-value=85 Score=23.78 Aligned_cols=32 Identities=13% Similarity=0.092 Sum_probs=23.6
Q ss_pred eEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEcCCc
Q 029508 10 HAVCVPYPAQGHVSPMMQVAKLLHSKGFHITFVNTEF 46 (192)
Q Consensus 10 ~Il~~p~p~~GH~~P~l~La~~La~rGh~VT~it~~~ 46 (192)
.+++++ +-|.+. .|+.+|.++|.+|..+..+.
T Consensus 108 ~~vLvS--gD~DF~---~Lv~~lre~G~~V~v~g~~~ 139 (160)
T TIGR00288 108 AVALVT--RDADFL---PVINKAKENGKETIVIGAEP 139 (160)
T ss_pred EEEEEe--ccHhHH---HHHHHHHHCCCEEEEEeCCC
Confidence 455555 567764 57788889999999999654
No 293
>TIGR01990 bPGM beta-phosphoglucomutase. The enzyme from L. lactis has been extensively characterized including a remarkable crystal structure which traps the pentacoordinate transition state.
Probab=27.73 E-value=2.5e+02 Score=20.57 Aligned_cols=23 Identities=13% Similarity=0.223 Sum_probs=18.7
Q ss_pred HHHHHHHHHhCCCeEEEEcCCch
Q 029508 25 MMQVAKLLHSKGFHITFVNTEFN 47 (192)
Q Consensus 25 ~l~La~~La~rGh~VT~it~~~~ 47 (192)
+.++.+.|.++|..+.+++....
T Consensus 92 ~~~~L~~L~~~g~~~~i~s~~~~ 114 (185)
T TIGR01990 92 IKNLLDDLKKNNIKIALASASKN 114 (185)
T ss_pred HHHHHHHHHHCCCeEEEEeCCcc
Confidence 57788999999999999886443
No 294
>PF03698 UPF0180: Uncharacterised protein family (UPF0180); InterPro: IPR005370 The members of this family are small uncharacterised proteins.
Probab=27.38 E-value=60 Score=21.61 Aligned_cols=22 Identities=23% Similarity=0.425 Sum_probs=18.4
Q ss_pred HHHHHHHHHhCCCeEEEEcCCc
Q 029508 25 MMQVAKLLHSKGFHITFVNTEF 46 (192)
Q Consensus 25 ~l~La~~La~rGh~VT~it~~~ 46 (192)
+..+...|.++|++|+-+....
T Consensus 10 Ls~v~~~L~~~GyeVv~l~~~~ 31 (80)
T PF03698_consen 10 LSNVKEALREKGYEVVDLENEQ 31 (80)
T ss_pred chHHHHHHHHCCCEEEecCCcc
Confidence 5678899999999999887554
No 295
>PF13614 AAA_31: AAA domain; PDB: 2VED_B 2PH1_A 3EA0_B 3FKQ_A 3KB1_B 1ION_A 3LA6_H 3BFV_B 3CIO_D.
Probab=27.35 E-value=1.3e+02 Score=21.55 Aligned_cols=34 Identities=18% Similarity=0.292 Sum_probs=24.3
Q ss_pred CCCccChHHHHHHHHHHHhCCCeEEEEcCCchhh
Q 029508 16 YPAQGHVSPMMQVAKLLHSKGFHITFVNTEFNHR 49 (192)
Q Consensus 16 ~p~~GH~~P~l~La~~La~rGh~VT~it~~~~~~ 49 (192)
.++.|=-.-...||+.|+++|++|-++-......
T Consensus 9 ~~g~G~t~~a~~lA~~la~~~~~Vllid~~~~~~ 42 (157)
T PF13614_consen 9 KGGVGKTTLALNLAAALARKGKKVLLIDFDFFSP 42 (157)
T ss_dssp STTSSHHHHHHHHHHHHHHTTT-EEEEE--SSS-
T ss_pred CCCCCHHHHHHHHHHHHHhcCCCeEEEECCCCCC
Confidence 4666777789999999999999988876655443
No 296
>PRK13354 tyrosyl-tRNA synthetase; Provisional
Probab=27.29 E-value=71 Score=27.97 Aligned_cols=27 Identities=26% Similarity=0.529 Sum_probs=21.3
Q ss_pred cChHHHHHHHHHHHhCCCeEEEEcCCch
Q 029508 20 GHVSPMMQVAKLLHSKGFHITFVNTEFN 47 (192)
Q Consensus 20 GH~~P~l~La~~La~rGh~VT~it~~~~ 47 (192)
||+.|++. .+.|.+.||++.++.....
T Consensus 50 Ghlv~l~~-l~~lq~~G~~~~~ligd~t 76 (410)
T PRK13354 50 GHLVPLMK-LKRFQDAGHRPVILIGGFT 76 (410)
T ss_pred hhHHHHHH-HHHHHHcCCeEEEEEcccc
Confidence 99999555 5688899999999885543
No 297
>TIGR00355 purH phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase. Involved in purine ribonucleotide biosynthesis. The IMP cyclohydrolase activity is in the N-terminal region.
Probab=27.23 E-value=2.4e+02 Score=25.59 Aligned_cols=26 Identities=19% Similarity=0.284 Sum_probs=19.9
Q ss_pred HHHHHHHHHHhCCCeEEEEcCCchhhhh
Q 029508 24 PMMQVAKLLHSKGFHITFVNTEFNHRRL 51 (192)
Q Consensus 24 P~l~La~~La~rGh~VT~it~~~~~~~~ 51 (192)
=+.++++.|.+.|++| +.|..+.+.+
T Consensus 12 ~iv~lAk~L~~lGfeI--iATgGTak~L 37 (511)
T TIGR00355 12 GIVEFAQGLVERGVEL--LSTGGTAKLL 37 (511)
T ss_pred cHHHHHHHHHHCCCEE--EEechHHHHH
Confidence 3678999999999887 4666666655
No 298
>PRK10867 signal recognition particle protein; Provisional
Probab=27.21 E-value=1.2e+02 Score=26.89 Aligned_cols=40 Identities=18% Similarity=0.218 Sum_probs=34.2
Q ss_pred eEEEEcCCCccChHHHHHHHHHHHhC-CCeEEEEcCCchhh
Q 029508 10 HAVCVPYPAQGHVSPMMQVAKLLHSK-GFHITFVNTEFNHR 49 (192)
Q Consensus 10 ~Il~~p~p~~GH~~P~l~La~~La~r-Gh~VT~it~~~~~~ 49 (192)
-|+++..+|.|=-.-...||..|+.+ |.+|.++..+.+..
T Consensus 102 vI~~vG~~GsGKTTtaakLA~~l~~~~G~kV~lV~~D~~R~ 142 (433)
T PRK10867 102 VIMMVGLQGAGKTTTAGKLAKYLKKKKKKKVLLVAADVYRP 142 (433)
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHHhcCCcEEEEEccccch
Confidence 45577778889999999999999999 99999999886554
No 299
>cd02040 NifH NifH gene encodes component II (iron protein) of nitrogenase. Nitrogenase is responsible for the biological nitrogen fixation, i.e. reduction of molecular nitrogen to ammonia. NifH consists of two oxygen-sensitive metallosulfur proteins: the mollybdenum-iron (alternatively, vanadium-iron or iron-iron) protein (commonly referred to as component 1), and the iron protein (commonly referred to as component 2). The iron protein is a homodimer, with an Fe4S4 cluster bound between the subunits and two ATP-binding domains. It supplies energy by ATP hydrolysis, and transfers electrons from reduced ferredoxin or flavodoxin to component 1 for the reduction of molecular nitrogen to ammonia.
Probab=27.17 E-value=1.4e+02 Score=23.75 Aligned_cols=37 Identities=11% Similarity=0.105 Sum_probs=30.0
Q ss_pred eEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEcCCc
Q 029508 10 HAVCVPYPAQGHVSPMMQVAKLLHSKGFHITFVNTEF 46 (192)
Q Consensus 10 ~Il~~p~p~~GH~~P~l~La~~La~rGh~VT~it~~~ 46 (192)
.|+++.=.|.|=-.-...||..|+++|++|-++=.+.
T Consensus 3 ~iav~~KGGvGKTT~~~nLA~~La~~G~kVlliD~Dp 39 (270)
T cd02040 3 QIAIYGKGGIGKSTTTQNLSAALAEMGKKVMIVGCDP 39 (270)
T ss_pred EEEEEeCCcCCHHHHHHHHHHHHHhCCCeEEEEEcCC
Confidence 5666644666888889999999999999999986543
No 300
>cd00805 TyrRS_core catalytic core domain of tyrosinyl-tRNA synthetase. Tyrosinyl-tRNA synthetase (TyrRS) catalytic core domain. TyrRS is a homodimer which attaches Tyr to the appropriate tRNA. TyrRS is a class I tRNA synthetases, so it aminoacylates the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formationof the enzyme bound aminoacyl-adenylate. It contains the class I characteristic HIGH and KMSKS motifs, which are involved in ATP binding.
Probab=27.15 E-value=72 Score=26.05 Aligned_cols=26 Identities=19% Similarity=0.446 Sum_probs=21.3
Q ss_pred cChHHHHHHHHHHHhCCCeEEEEcCCc
Q 029508 20 GHVSPMMQVAKLLHSKGFHITFVNTEF 46 (192)
Q Consensus 20 GH~~P~l~La~~La~rGh~VT~it~~~ 46 (192)
||+.+++ ..+.|.+.||+|.++..+.
T Consensus 17 G~~~~~~-~~~~lq~~g~~~~ilI~D~ 42 (269)
T cd00805 17 GHLVPLM-KLRDFQQAGHEVIVLIGDA 42 (269)
T ss_pred HHHHHHH-HHHHHHHCCCeEEEEECCC
Confidence 9999876 6777778899999987764
No 301
>COG0503 Apt Adenine/guanine phosphoribosyltransferases and related PRPP-binding proteins [Nucleotide transport and metabolism]
Probab=27.10 E-value=1.6e+02 Score=22.47 Aligned_cols=30 Identities=13% Similarity=0.075 Sum_probs=22.5
Q ss_pred CCeEEEEeCC--CcchHHHHHHHhCCceEEec
Q 029508 117 PPVTCVVSDG--IMGFGRKAAQMLGILDIQFW 146 (192)
Q Consensus 117 ~~~d~vI~D~--~~~~~~~vA~~lgIP~i~~~ 146 (192)
.++|.|+.=- -+..+..+|.++|+|.+..-
T Consensus 52 ~~id~Iv~iea~Gi~~a~~vA~~Lgvp~v~vR 83 (179)
T COG0503 52 DGIDKIVTIEARGIPLAAAVALELGVPFVPVR 83 (179)
T ss_pred cCCCEEEEEccccchhHHHHHHHhCCCEEEEE
Confidence 4688888732 34567899999999998743
No 302
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=27.08 E-value=1.3e+02 Score=24.57 Aligned_cols=39 Identities=13% Similarity=0.191 Sum_probs=31.8
Q ss_pred eEEEEcCCCccChHHHHHHHHHHHhC-C-CeEEEEcCCchh
Q 029508 10 HAVCVPYPAQGHVSPMMQVAKLLHSK-G-FHITFVNTEFNH 48 (192)
Q Consensus 10 ~Il~~p~p~~GH~~P~l~La~~La~r-G-h~VT~it~~~~~ 48 (192)
-++++-..|.|=-.-...||..++.+ | ++|.+++.+.+.
T Consensus 196 vi~~vGptGvGKTTt~~kLa~~~~~~~g~~~V~li~~D~~r 236 (282)
T TIGR03499 196 VIALVGPTGVGKTTTLAKLAARFVLEHGNKKVALITTDTYR 236 (282)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHHcCCCeEEEEECCccc
Confidence 45566667778888899999999886 5 999999988754
No 303
>PRK09219 xanthine phosphoribosyltransferase; Validated
Probab=26.94 E-value=1.5e+02 Score=22.97 Aligned_cols=33 Identities=15% Similarity=0.079 Sum_probs=24.5
Q ss_pred CCeEEEEe-CC-CcchHHHHHHHhCCceEEecCCc
Q 029508 117 PPVTCVVS-DG-IMGFGRKAAQMLGILDIQFWTAS 149 (192)
Q Consensus 117 ~~~d~vI~-D~-~~~~~~~vA~~lgIP~i~~~t~~ 149 (192)
.++|+|+. +. -++.+..+|.++|+|.+...-..
T Consensus 49 ~~~D~Ivg~e~~GiplA~~lA~~Lg~p~v~vRK~~ 83 (189)
T PRK09219 49 EGITKILTIEASGIAPAVMAALALGVPVVFAKKKK 83 (189)
T ss_pred CCCCEEEEEccccHHHHHHHHHHHCCCEEEEEECC
Confidence 46899886 32 23667899999999998876543
No 304
>PF10657 RC-P840_PscD: Photosystem P840 reaction centre protein PscD; InterPro: IPR019608 Oxygenic photosynthesis uses two multi-subunit photosystems (I and II) located in the cell membranes of cyanobacteria and in the thylakoid membranes of chloroplasts in plants and algae. Photosystem II (PSII) has a P680 reaction centre containing chlorophyll 'a' that uses light energy to carry out the oxidation (splitting) of water molecules, and to produce ATP via a proton pump. Photosystem I (PSI) has a P700 reaction centre containing chlorophyll that takes the electron and associated hydrogen donated from PSII to reduce NADP+ to NADPH. Both ATP and NADPH are subsequently used in the light-independent reactions to convert carbon dioxide to glucose using the hydrogen atom extracted from water by PSII, releasing oxygen as a by-product. The photosynthetic reaction centres (RCs) of aerotolerant organisms contain a heterodimeric core, built up of two strongly homologous polypeptides each of which contributes five transmembrane peptide helices to hold a pseudo-symmetric double set of redox components. Two molecules of PscD are housed within a subunit. PscD may be involved in stabilising the PscB component since it is found to co-precipitate with FMO (Fenna-Mathews-Olson BChl a-protein) and PscB. It may also be involved in the interaction with ferredoxin [].
Probab=26.85 E-value=96 Score=22.44 Aligned_cols=39 Identities=18% Similarity=0.204 Sum_probs=35.2
Q ss_pred CceEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEcCCc
Q 029508 8 KAHAVCVPYPAQGHVSPMMQVAKLLHSKGFHITFVNTEF 46 (192)
Q Consensus 8 ~~~Il~~p~p~~GH~~P~l~La~~La~rGh~VT~it~~~ 46 (192)
+..|-+.|..|++-+.|.-++.+.|.+.-.++.++++..
T Consensus 46 ~Lql~i~pasGrrkLspt~emi~~l~~geIel~VLttqp 84 (144)
T PF10657_consen 46 KLQLTISPASGRRKLSPTPEMIDKLISGEIELFVLTTQP 84 (144)
T ss_pred ceEEEEecCCCccccCCcHHHHHHHhcCceEEEEEccCC
Confidence 567789999999999999999999999999999998864
No 305
>COG3046 Uncharacterized protein related to deoxyribodipyrimidine photolyase [General function prediction only]
Probab=26.80 E-value=75 Score=28.04 Aligned_cols=26 Identities=15% Similarity=0.319 Sum_probs=23.2
Q ss_pred ChHHHHHHHHHHHhCCCeEEEEcCCc
Q 029508 21 HVSPMMQVAKLLHSKGFHITFVNTEF 46 (192)
Q Consensus 21 H~~P~l~La~~La~rGh~VT~it~~~ 46 (192)
|+..|.+++.+|.++|++|++...+.
T Consensus 51 v~aAMR~Fad~LraeG~~V~Y~~~~~ 76 (505)
T COG3046 51 VFAAMRHFADELRAEGLKVRYERADD 76 (505)
T ss_pred HHHHHHHHHHHHhhCCceeEEEEcCC
Confidence 45789999999999999999998766
No 306
>PRK13609 diacylglycerol glucosyltransferase; Provisional
Probab=26.76 E-value=1.1e+02 Score=25.63 Aligned_cols=31 Identities=10% Similarity=-0.105 Sum_probs=18.8
Q ss_pred CCeEEEEeCCCcchHHHHH--HHhCCceEEecC
Q 029508 117 PPVTCVVSDGIMGFGRKAA--QMLGILDIQFWT 147 (192)
Q Consensus 117 ~~~d~vI~D~~~~~~~~vA--~~lgIP~i~~~t 147 (192)
.+||+||.+.-......+. ..+++|.+...+
T Consensus 103 ~~pD~Vi~~~~~~~~~~~~~~~~~~ip~~~~~t 135 (380)
T PRK13609 103 EKPDIVINTFPIIAVPELKKQTGISIPTYNVLT 135 (380)
T ss_pred hCcCEEEEcChHHHHHHHHHhcCCCCCeEEEeC
Confidence 5799999985443333222 345699875443
No 307
>cd01980 Chlide_reductase_Y Chlide_reductase_Y : Y subunit of chlorophyllide (chlide) reductase (BchY). Chlide reductase participates in photosynthetic pigment synthesis playing a role in the conversion of chlorophylls(Chl) into bacteriochlorophylls (BChl). Chlide reductase catalyzes the reduction of the B-ring of the tetrapyrolle. Chlide reductase is a three subunit enzyme (subunits are designated BchX, BchY and BchZ). The similarity between these three subunits and the subunits for nitrogenase suggests that BchX serves as an electron donor for the BchY-BchY catalytic subunits.
Probab=26.64 E-value=1.1e+02 Score=26.68 Aligned_cols=27 Identities=11% Similarity=-0.061 Sum_probs=21.7
Q ss_pred CCeEEEEeCCCcchHHHHHHHhCCceEEec
Q 029508 117 PPVTCVVSDGIMGFGRKAAQMLGILDIQFW 146 (192)
Q Consensus 117 ~~~d~vI~D~~~~~~~~vA~~lgIP~i~~~ 146 (192)
.++|++|.. .-+..+|+++|||.+.+.
T Consensus 349 ~~pDl~Ig~---s~~~~~a~~~giP~~r~~ 375 (416)
T cd01980 349 YRPDLAIGT---TPLVQYAKEKGIPALYYT 375 (416)
T ss_pred cCCCEEEeC---ChhhHHHHHhCCCEEEec
Confidence 479999977 346789999999997644
No 308
>TIGR02329 propionate_PrpR propionate catabolism operon regulatory protein PrpR. At least five distinct pathways exists for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR, whose gene is found in most cases divergently transcribed from an operon for the methylcitric acid cycle of propionate catabolism. 2-methylcitric acid, a catabolite by this pathway, is a coactivator of PrpR.
Probab=26.56 E-value=1.1e+02 Score=27.70 Aligned_cols=41 Identities=17% Similarity=0.266 Sum_probs=33.3
Q ss_pred HHHHHHHHHhhcCCCCCCCCeEEEEeCCCcchHHHHHHHhCCceEEecCC
Q 029508 99 APFLELLGKLNSSADDQVPPVTCVVSDGIMGFGRKAAQMLGILDIQFWTA 148 (192)
Q Consensus 99 ~~~~~ll~~l~~~~~~~~~~~d~vI~D~~~~~~~~vA~~lgIP~i~~~t~ 148 (192)
+.++..++++.+ .++++||.|.. +..+|+++|++.+...+.
T Consensus 132 ~e~~~~~~~l~~------~G~~~viG~~~---~~~~A~~~gl~~ili~s~ 172 (526)
T TIGR02329 132 EDARSCVNDLRA------RGIGAVVGAGL---ITDLAEQAGLHGVFLYSA 172 (526)
T ss_pred HHHHHHHHHHHH------CCCCEEECChH---HHHHHHHcCCceEEEecH
Confidence 456777777765 57999999973 579999999999988774
No 309
>cd01965 Nitrogenase_MoFe_beta_like Nitrogenase_MoFe_beta_like: Nitrogenase MoFe protein, beta subunit_like. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen (N2) to ammonia. This group contains the beta subunits of component 1 of the three known genetically distinct types of nitrogenase systems: a molybdenum-dependent nitrogenase (Mo-nitrogenase), a vanadium-dependent nitrogenase (V-nitrogenase), and an iron-only nitrogenase (Fe-nitrogenase). These nitrogenase systems consist of component 1 (MoFe protein, VFe protein or, FeFe protein respectively) and, component 2 (Fe protein). The most widespread and best characterized of these systems is the Mo-nitrogenase. MoFe is an alpha2beta2 tetramer, the alternative nitrogenases are alpha2beta2delta2 hexamers having alpha and beta subunits similar to the alpha and beta subunits of MoFe. For MoFe, each alphabeta pair contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (Fe
Probab=26.42 E-value=1.6e+02 Score=25.65 Aligned_cols=41 Identities=12% Similarity=0.100 Sum_probs=30.4
Q ss_pred CeEEEEeC-CCcchHHHHHHHhCCceEEec-CCchHHHHHHHh
Q 029508 118 PVTCVVSD-GIMGFGRKAAQMLGILDIQFW-TASACGMMGYLQ 158 (192)
Q Consensus 118 ~~d~vI~D-~~~~~~~~vA~~lgIP~i~~~-t~~a~~~~~~~~ 158 (192)
...+++.. ....++..+.+++|+|++.+. +.+.....-++.
T Consensus 223 ~lniv~~~~~~~~~a~~L~e~~GiP~~~~~~p~G~~~t~~~l~ 265 (428)
T cd01965 223 KATIALGEYSGRKAAKALEEKFGVPYILFPTPIGLKATDEFLR 265 (428)
T ss_pred cEEEEEChhhhHHHHHHHHHHHCCCeeecCCCcChHHHHHHHH
Confidence 57788877 555677788889999999886 677666655543
No 310
>cd01452 VWA_26S_proteasome_subunit 26S proteasome plays a major role in eukaryotic protein breakdown, especially for ubiquitin-tagged proteins. It is an ATP-dependent protease responsible for the bulk of non-lysosomal proteolysis in eukaryotes, often using covalent modification of proteins by ubiquitylation. It consists of a 20S proteolytic core particle (CP) and a 19S regulatory particle (RP). The CP is an ATP independent peptidase consisting of hydrolyzing activities. One or both ends of CP carry the RP that confers both ubiquitin and ATP dependence to the 26S proteosome. The RP's proposed functions include recognition of substrates and translocation of these to CP for proteolysis. The RP can dissociate into a stable lid and base subcomplexes. The base is composed of three non-ATPase subunits (Rpn 1, 2 and 10). A single residue in the vWA domain of Rpn10 has been implicated to be responsible for stabilizing the lid-base association.
Probab=26.24 E-value=2.5e+02 Score=21.68 Aligned_cols=33 Identities=18% Similarity=0.333 Sum_probs=20.7
Q ss_pred EEEEcCCCccChHHHHHHHHHHHhCCCeEEEEc
Q 029508 11 AVCVPYPAQGHVSPMMQVAKLLHSKGFHITFVN 43 (192)
Q Consensus 11 Il~~p~p~~GH~~P~l~La~~La~rGh~VT~it 43 (192)
|+|+..++.-|--=+.+.+++|+..|.+|.++.
T Consensus 111 vi~v~S~~~~d~~~i~~~~~~lkk~~I~v~vI~ 143 (187)
T cd01452 111 VAFVGSPIEEDEKDLVKLAKRLKKNNVSVDIIN 143 (187)
T ss_pred EEEEecCCcCCHHHHHHHHHHHHHcCCeEEEEE
Confidence 455665655554445567777777776666665
No 311
>TIGR01918 various_sel_PB selenoprotein B, glycine/betaine/sarcosine/D-proline reductase family. This model represents selenoprotein B of glycine reductase, sarcosine reductase, betaine reductase, D-proline reductase, and perhaps others. This model is built in fragment mode to assist in recognizing fragmentary translations. All members are expected to contain an internal TGA codon, encoding selenocysteine, which may be misinterpreted as a stop codon.
Probab=26.18 E-value=1.3e+02 Score=26.51 Aligned_cols=30 Identities=3% Similarity=0.006 Sum_probs=21.9
Q ss_pred CCeEEEEeCCCcch----------HHHHHHHhCCceEEec
Q 029508 117 PPVTCVVSDGIMGF----------GRKAAQMLGILDIQFW 146 (192)
Q Consensus 117 ~~~d~vI~D~~~~~----------~~~vA~~lgIP~i~~~ 146 (192)
-++|++|+-..|.. +..+.+++|||.+.-.
T Consensus 75 ~~pDv~iaGPaFNagrYG~acg~va~aV~e~~~IP~vt~M 114 (431)
T TIGR01918 75 KEPDIFIAGPAFNAGRYGVACGEICKVVQDKLNVPAVTSM 114 (431)
T ss_pred cCCCEEEEcCccCCccHHHHHHHHHHHHHHhhCCCeEEEe
Confidence 47999999986642 1245668999998754
No 312
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=26.17 E-value=1.5e+02 Score=26.20 Aligned_cols=40 Identities=15% Similarity=0.270 Sum_probs=35.2
Q ss_pred ceEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEcCCchh
Q 029508 9 AHAVCVPYPAQGHVSPMMQVAKLLHSKGFHITFVNTEFNH 48 (192)
Q Consensus 9 ~~Il~~p~p~~GH~~P~l~La~~La~rGh~VT~it~~~~~ 48 (192)
..|+++...|.|=-.-...||..|..+|.+|.+++++..+
T Consensus 242 ~vI~LVGptGvGKTTTiaKLA~~L~~~GkkVglI~aDt~R 281 (436)
T PRK11889 242 QTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSR 281 (436)
T ss_pred cEEEEECCCCCcHHHHHHHHHHHHHHcCCcEEEEecCCcc
Confidence 4677888889999999999999999999999999987654
No 313
>TIGR01917 gly_red_sel_B glycine reductase, selenoprotein B. Glycine reductase is a complex with two selenoprotein subunits, A and B. This model represents the glycine reductase selenoprotein B. Closely related to it, but excluded from this model, are selenoprotein B subunits of betaine reductase and sarcosine reductase. All contain selenocysteine incorporated during translation at a specific UGA codon.
Probab=26.15 E-value=1.3e+02 Score=26.52 Aligned_cols=30 Identities=10% Similarity=0.092 Sum_probs=21.8
Q ss_pred CCeEEEEeCCCcch----------HHHHHHHhCCceEEec
Q 029508 117 PPVTCVVSDGIMGF----------GRKAAQMLGILDIQFW 146 (192)
Q Consensus 117 ~~~d~vI~D~~~~~----------~~~vA~~lgIP~i~~~ 146 (192)
-++|++|+-..|.. +..+.+++|||.+.-.
T Consensus 75 ~~pDv~iaGPaFNagrYG~acg~va~aV~e~~~IP~vtaM 114 (431)
T TIGR01917 75 ANPDIFIAGPAFNAGRYGMAAGAITKAVQDELGIKAFTAM 114 (431)
T ss_pred cCCCEEEEcCccCCccHHHHHHHHHHHHHHhhCCCeEEEe
Confidence 47999999986642 1245668999998754
No 314
>TIGR01285 nifN nitrogenase molybdenum-iron cofactor biosynthesis protein NifN. This protein forms a complex with NifE, and appears as a NifEN in some species. NifEN is a required for producing the molybdenum-iron cofactor of molybdenum-requiring nitrogenases. NifN is closely related to the nitrogenase molybdenum-iron protein beta chain NifK. This model describes most examples of NifN but excludes some cases, such as the putative NifN of Chlorobium tepidum, for which a separate model may be created.
Probab=26.08 E-value=1e+02 Score=27.06 Aligned_cols=24 Identities=21% Similarity=0.326 Sum_probs=19.3
Q ss_pred CCeEEEEeCCCcchHHHHHHHhCCceE
Q 029508 117 PPVTCVVSDGIMGFGRKAAQMLGILDI 143 (192)
Q Consensus 117 ~~~d~vI~D~~~~~~~~vA~~lgIP~i 143 (192)
.++|++|... +...+|+++|||.+
T Consensus 372 ~~~dliig~s---~~k~~A~~l~ip~i 395 (432)
T TIGR01285 372 AGADLLITNS---HGRALAQRLALPLV 395 (432)
T ss_pred cCCCEEEECc---chHHHHHHcCCCEE
Confidence 4688888765 56889999999987
No 315
>PF02142 MGS: MGS-like domain This is a subfamily of this family; InterPro: IPR011607 This domain composes the whole protein of methylglyoxal synthetase and the domain is also found in carbamoyl phosphate synthetase (CPS) where it forms a regulatory domain that binds to the allosteric effector ornithine. The known structures in this domain show a common phosphate binding site []. ; PDB: 4A1O_A 3ZZM_A 1ZCZ_A 1M6V_C 1CS0_C 1C30_E 1C3O_G 1BXR_A 1T36_E 1A9X_A ....
Probab=26.05 E-value=68 Score=21.49 Aligned_cols=26 Identities=31% Similarity=0.328 Sum_probs=19.9
Q ss_pred HHHHHHHHHhCCCeEEEEcCCchhhhhh
Q 029508 25 MMQVAKLLHSKGFHITFVNTEFNHRRLI 52 (192)
Q Consensus 25 ~l~La~~La~rGh~VT~it~~~~~~~~~ 52 (192)
++++|++|++.|+ .++.|....+.+.
T Consensus 2 ~~~~a~~l~~lG~--~i~AT~gTa~~L~ 27 (95)
T PF02142_consen 2 IVPLAKRLAELGF--EIYATEGTAKFLK 27 (95)
T ss_dssp HHHHHHHHHHTTS--EEEEEHHHHHHHH
T ss_pred HHHHHHHHHHCCC--EEEEChHHHHHHH
Confidence 5789999999995 4567777776563
No 316
>PRK00945 acetyl-CoA decarbonylase/synthase complex subunit epsilon; Provisional
Probab=26.04 E-value=1.8e+02 Score=22.28 Aligned_cols=30 Identities=13% Similarity=-0.112 Sum_probs=20.8
Q ss_pred CCeEEEEeCCCcch-------HHHHHHHhCCceEEecC
Q 029508 117 PPVTCVVSDGIMGF-------GRKAAQMLGILDIQFWT 147 (192)
Q Consensus 117 ~~~d~vI~D~~~~~-------~~~vA~~lgIP~i~~~t 147 (192)
.+| ++|......+ ...+|+++|+|++....
T Consensus 35 KrP-lIivG~ga~~~~ea~e~l~elaEkl~iPVvtT~~ 71 (171)
T PRK00945 35 KRP-LLVVGSLLLDDEELLDRAVKIAKKANIPVAATGG 71 (171)
T ss_pred CCc-EEEECcCccccchHHHHHHHHHHHHCCCEEEccc
Confidence 356 5666554433 56899999999997665
No 317
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=25.98 E-value=2e+02 Score=22.50 Aligned_cols=44 Identities=11% Similarity=0.015 Sum_probs=35.4
Q ss_pred CceEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEcCCchhhhh
Q 029508 8 KAHAVCVPYPAQGHVSPMMQVAKLLHSKGFHITFVNTEFNHRRL 51 (192)
Q Consensus 8 ~~~Il~~p~p~~GH~~P~l~La~~La~rGh~VT~it~~~~~~~~ 51 (192)
..-+++.-.||.|--.-..+++...+.+|..|.+++.+...+.+
T Consensus 25 g~~~~i~G~~GsGKt~l~~~~~~~~~~~g~~~~y~~~e~~~~~~ 68 (234)
T PRK06067 25 PSLILIEGDHGTGKSVLSQQFVYGALKQGKKVYVITTENTSKSY 68 (234)
T ss_pred CcEEEEECCCCCChHHHHHHHHHHHHhCCCEEEEEEcCCCHHHH
Confidence 34556777899999989999998888899999999997665444
No 318
>PRK14494 putative molybdopterin-guanine dinucleotide biosynthesis protein MobB/FeS domain-containing protein protein; Provisional
Probab=25.97 E-value=1.5e+02 Score=23.70 Aligned_cols=33 Identities=12% Similarity=0.350 Sum_probs=28.0
Q ss_pred EEEEcCCCccChHHHHHHHHHHHhCCCeEEEEc
Q 029508 11 AVCVPYPAQGHVSPMMQVAKLLHSKGFHITFVN 43 (192)
Q Consensus 11 Il~~p~p~~GH~~P~l~La~~La~rGh~VT~it 43 (192)
|.++-..+.|=-.-+..|+++|.++|++|-++-
T Consensus 4 i~ivG~~gsGKTtl~~~l~~~L~~~G~~V~viK 36 (229)
T PRK14494 4 IGVIGFKDSGKTTLIEKILKNLKERGYRVATAK 36 (229)
T ss_pred EEEECCCCChHHHHHHHHHHHHHhCCCeEEEEE
Confidence 446666788888889999999999999999994
No 319
>PF13378 MR_MLE_C: Enolase C-terminal domain-like; PDB: 3FCP_B 3P0W_D 3VFC_A 3VDG_A 3FJ4_B 3CT2_B 3DGB_A 3V3W_A 3V4B_A 3NO1_E ....
Probab=25.92 E-value=1.9e+02 Score=19.60 Aligned_cols=52 Identities=21% Similarity=0.121 Sum_probs=33.2
Q ss_pred HHHHHHHHhhcCCCCCCCCeEEEEeCCCcc-----h--HHHHHHHhCCceEEecCCchHHHHHHHhHH
Q 029508 100 PFLELLGKLNSSADDQVPPVTCVVSDGIMG-----F--GRKAAQMLGILDIQFWTASACGMMGYLQHV 160 (192)
Q Consensus 100 ~~~~ll~~l~~~~~~~~~~~d~vI~D~~~~-----~--~~~vA~~lgIP~i~~~t~~a~~~~~~~~lp 160 (192)
.++++++. .-+|++..|.... + ...+|+.+|+++..=...+...++...|+-
T Consensus 9 ~~~~li~~---------~a~d~~~~~~~~~GGit~~~~i~~~A~~~gi~~~~h~~~~~i~~aa~~hla 67 (111)
T PF13378_consen 9 DFRRLIEA---------GAVDIVQIDPTRCGGITEALRIAALAEAHGIPVMPHSMESGIGLAASLHLA 67 (111)
T ss_dssp HHHHHHHT---------TSCSEEEEBHHHHTSHHHHHHHHHHHHHTT-EEEEBSSSSHHHHHHHHHHH
T ss_pred HHHHHHHc---------CCCCEEEeCchhcCCHHHHHHHHHHHHHhCCCEEecCCCCcHHHHHHHHHH
Confidence 45666653 4689999996432 2 247889999998766655555556666653
No 320
>TIGR01012 Sa_S2_E_A ribosomal protein Sa(cytosolic)/S2(archaeal). TIGR01011 describes the related protein of organelles and bacteria.
Probab=25.91 E-value=96 Score=24.30 Aligned_cols=31 Identities=23% Similarity=0.161 Sum_probs=22.7
Q ss_pred CeE-EEEeCCCc-chHHHHHHHhCCceEEecCC
Q 029508 118 PVT-CVVSDGIM-GFGRKAAQMLGILDIQFWTA 148 (192)
Q Consensus 118 ~~d-~vI~D~~~-~~~~~vA~~lgIP~i~~~t~ 148 (192)
.|| +||.|... .-+..-|.++|||+|.+.-+
T Consensus 108 ~Pdlliv~dp~~~~~Av~EA~~l~IP~Iai~DT 140 (196)
T TIGR01012 108 EPEVVVVTDPRADHQALKEASEVGIPIVALCDT 140 (196)
T ss_pred CCCEEEEECCccccHHHHHHHHcCCCEEEEeeC
Confidence 356 55558866 44678899999999987653
No 321
>PRK09545 znuA high-affinity zinc transporter periplasmic component; Reviewed
Probab=25.73 E-value=1.5e+02 Score=24.70 Aligned_cols=44 Identities=14% Similarity=0.039 Sum_probs=31.6
Q ss_pred HHHHHHHHhhcCCCCCCCCeEEEEeCCCcch--HHHHHHHhCCceEEecCCc
Q 029508 100 PFLELLGKLNSSADDQVPPVTCVVSDGIMGF--GRKAAQMLGILDIQFWTAS 149 (192)
Q Consensus 100 ~~~~ll~~l~~~~~~~~~~~d~vI~D~~~~~--~~~vA~~lgIP~i~~~t~~ 149 (192)
.+.++++.+++ .++.||+.+..+.- +..++++.|++.+.+.+.+
T Consensus 240 ~l~~l~~~ik~------~~v~~If~e~~~~~~~~~~la~e~g~~v~~ldpl~ 285 (311)
T PRK09545 240 RLHEIRTQLVE------QKATCVFAEPQFRPAVIESVAKGTSVRMGTLDPLG 285 (311)
T ss_pred HHHHHHHHHHH------cCCCEEEecCCCChHHHHHHHHhcCCeEEEecccc
Confidence 34555555554 57899999987743 4589999999987775544
No 322
>cd00550 ArsA_ATPase Oxyanion-translocating ATPase (ArsA). This ATPase is involved in transport of arsenite, antimonite or other oxyanions across biological membranes in all three kingdoms of life. ArsA contains a highly conserved AAA motif present in the AAA+ ATPase superfamily associated with a variety of cellular activities. To form a functional ATP-driven pump, ArsA interacts with the permease ArsB, which is a channel-forming integral membrane protein. One of the most interesting features of ArsA is the allosteric activation by its transport substrates. A divalent cation, typically Mg2+, is required for its enzymatic activity.
Probab=25.63 E-value=1.3e+02 Score=24.23 Aligned_cols=38 Identities=18% Similarity=0.179 Sum_probs=31.1
Q ss_pred EEEE-cCCCccChHHHHHHHHHHHhCCCeEEEEcCCchh
Q 029508 11 AVCV-PYPAQGHVSPMMQVAKLLHSKGFHITFVNTEFNH 48 (192)
Q Consensus 11 Il~~-p~p~~GH~~P~l~La~~La~rGh~VT~it~~~~~ 48 (192)
++++ .-+|.|--.....+|..++++|.+|-++..+..+
T Consensus 2 ~~~~~gkgG~GKtt~a~~la~~~a~~g~~vLlvd~D~~~ 40 (254)
T cd00550 2 YIFFGGKGGVGKTTISAATAVRLAEQGKKVLLVSTDPAH 40 (254)
T ss_pred EEEEECCCCchHHHHHHHHHHHHHHCCCCceEEeCCCcc
Confidence 4444 4577899999999999999999999999887643
No 323
>PF04493 Endonuclease_5: Endonuclease V; InterPro: IPR007581 Endonuclease V is specific for single-stranded DNA, for duplex DNA that contains uracil, or that is damaged []. Matrix metalloproteinase-1 (MMP-1) is the major enzyme responsible for collagen 1 digestion. It is induced by exposure to sunlight, but is reduced with treatment of DNA repair enzyme endonuclease V []. This family consequently has potential medical importance []. This endonuclease also appears in bifunctional enzymes, such as the bifunctional methyltransferase/endonuclease in Thermoplasma acidophilum.; GO: 0004519 endonuclease activity, 0006281 DNA repair; PDB: 3GA2_A 2W36_A 3HD0_A 2W35_B 3GOC_B.
Probab=25.61 E-value=95 Score=24.47 Aligned_cols=44 Identities=23% Similarity=0.194 Sum_probs=25.7
Q ss_pred HHHHHHHHHhhcCCCCCCCCeEEEEeCCCcc-------hHHHHHHHhCCceEEecCCc
Q 029508 99 APFLELLGKLNSSADDQVPPVTCVVSDGIMG-------FGRKAAQMLGILDIQFWTAS 149 (192)
Q Consensus 99 ~~~~~ll~~l~~~~~~~~~~~d~vI~D~~~~-------~~~~vA~~lgIP~i~~~t~~ 149 (192)
+.+.++++++. .++|+|+.|..-. .+.-++-.+++|.|...=..
T Consensus 77 P~~l~~l~~l~-------~~~dvilvDG~G~~HpR~~GlA~HlGv~l~iPtIGVAK~~ 127 (206)
T PF04493_consen 77 PCILEALEKLK-------NKPDVILVDGHGILHPRRFGLASHLGVLLDIPTIGVAKSL 127 (206)
T ss_dssp HHHHHHHHTSS-------S--SCEEEES-SSSSTTS--HHHHHHHHHTS-EEEEESS-
T ss_pred HHHHHHHHHhc-------ccCCEEEEeCceeecCCCcChhheeeeccCCCEEEEeCcc
Confidence 56677777774 3689999997532 23345556689988765443
No 324
>TIGR00379 cobB cobyrinic acid a,c-diamide synthase. This model describes cobyrinic acid a,c-diamide synthase, the cobB (cbiA in Salmonella) protein of cobalamin biosynthesis. It is responsible for the amidation of carboxylic groups at positions A and C of either cobyrinic acid or hydrogenobrynic acid. NH(2) groups are provided by glutamine and one molecule of ATP hydrogenolyzed for each amidation.
Probab=25.60 E-value=2.2e+02 Score=25.14 Aligned_cols=101 Identities=15% Similarity=0.187 Sum_probs=56.3
Q ss_pred CCccChHHHHHHHHHHHhCCCeEEEEcCCchhhhhhhccCCCccCCCCCceeEecCCCCCCCCCCCCCCHHHHHHHHHHh
Q 029508 17 PAQGHVSPMMQVAKLLHSKGFHITFVNTEFNHRRLIRSKGPEYVKGLPDFRFETIPDGLPPSDRDATQDVPALSDSIRKN 96 (192)
Q Consensus 17 p~~GH~~P~l~La~~La~rGh~VT~it~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (192)
.+.|=-.-...|++.|.++|++|..+-+-.. .. ...++..-.+.+..+.+ . ++ .
T Consensus 9 t~vGKT~vt~~L~~~L~~~G~~V~~fK~g~d--~~-------------D~~~~~~~~g~~~~~ld---~---~~-----~ 62 (449)
T TIGR00379 9 SGVGKTTISTGIMKALSRRKLRVQPFKVGPD--YI-------------DPMFHTQATGRPSRNLD---S---FF-----M 62 (449)
T ss_pred CCCcHHHHHHHHHHHHHHCCCceeEEccCCC--CC-------------CHHHHHHHhCCchhhCC---c---cc-----C
Confidence 4456667789999999999999998853110 00 00000000011111111 0 11 0
Q ss_pred CcHHHHHHHHHhhcCCCCCCCCeEEEEeCCCcch------------HHHHHHHhCCceEEecCCch
Q 029508 97 GLAPFLELLGKLNSSADDQVPPVTCVVSDGIMGF------------GRKAAQMLGILDIQFWTASA 150 (192)
Q Consensus 97 ~~~~~~~ll~~l~~~~~~~~~~~d~vI~D~~~~~------------~~~vA~~lgIP~i~~~t~~a 150 (192)
..+.+++.++++. .+.|++|.+...++ ..++|+.++.|++.......
T Consensus 63 ~~~~i~~~~~~~~-------~~~D~viVEGagGl~~g~~p~~~~~s~adlAk~l~~pVILV~~~~~ 121 (449)
T TIGR00379 63 SEAQIQECFHRHS-------KGTDYSIIEGVRGLYDGISAITDYGSTASVAKALDAPIVLVMNCQR 121 (449)
T ss_pred CHHHHHHHHHHhc-------ccCCEEEEecCCccccCCCCCCCCccHHHHHHHhCCCEEEEECCch
Confidence 1233445555543 35799997765222 56999999999998876553
No 325
>COG0859 RfaF ADP-heptose:LPS heptosyltransferase [Cell envelope biogenesis, outer membrane]
Probab=25.60 E-value=4e+02 Score=22.24 Aligned_cols=107 Identities=18% Similarity=0.085 Sum_probs=66.8
Q ss_pred ceEEEEcCCCccChHHHHHHHHHHHhC--CCeEEEEcCCchhhhhhhccCCCccCCCCCceeEecCCCCCCCCCCCCCCH
Q 029508 9 AHAVCVPYPAQGHVSPMMQVAKLLHSK--GFHITFVNTEFNHRRLIRSKGPEYVKGLPDFRFETIPDGLPPSDRDATQDV 86 (192)
Q Consensus 9 ~~Il~~p~p~~GH~~P~l~La~~La~r--Gh~VT~it~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~ 86 (192)
.+|+++-.-..|.++-...+.+.|.++ +.++++++......-+. ..|.|+-+..-+. . . ..
T Consensus 2 ~kIliir~~~iGD~vlt~p~~~~lk~~~P~a~i~~~~~~~~~~i~~---------~~p~I~~vi~~~~--~---~--~~- 64 (334)
T COG0859 2 MKILVIRLSKLGDVVLTLPLLRTLKKAYPNAKIDVLVPKGFAPILK---------LNPEIDKVIIIDK--K---K--KG- 64 (334)
T ss_pred ceEEEEeccchhHHHhHHHHHHHHHHHCCCCEEEEEeccchHHHHh---------cChHhhhhccccc--c---c--cc-
Confidence 578888888889999999999999987 59999999988776442 2233332221100 0 0 00
Q ss_pred HHHHHHHHHhCcHHHHHHHHHhhcCCCCCCCCeEEEEeCCCcchHHHHHHHhCCceEEecC
Q 029508 87 PALSDSIRKNGLAPFLELLGKLNSSADDQVPPVTCVVSDGIMGFGRKAAQMLGILDIQFWT 147 (192)
Q Consensus 87 ~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~d~vI~D~~~~~~~~vA~~lgIP~i~~~t 147 (192)
. ......++.+.+++ .++|+||.=.-..=...++...++|.-.-+-
T Consensus 65 ~---------~~~~~~~l~~~lr~------~~yD~vidl~~~~ksa~l~~~~~~~~r~g~~ 110 (334)
T COG0859 65 L---------GLKERLALLRTLRK------ERYDAVIDLQGLLKSALLALLLGIPFRIGFD 110 (334)
T ss_pred c---------chHHHHHHHHHhhc------cCCCEEEECcccHHHHHHHHHhCCCcccccc
Confidence 0 01223455565553 4799877533333345677788888865555
No 326
>PF14626 RNase_Zc3h12a_2: Zc3h12a-like Ribonuclease NYN domain
Probab=25.42 E-value=88 Score=22.53 Aligned_cols=30 Identities=7% Similarity=0.186 Sum_probs=24.1
Q ss_pred hHHHHHHHHHHHhCCCeEEEEcCCchhhhh
Q 029508 22 VSPMMQVAKLLHSKGFHITFVNTEFNHRRL 51 (192)
Q Consensus 22 ~~P~l~La~~La~rGh~VT~it~~~~~~~~ 51 (192)
+-|+.++.-...-|||++|++.+.-+.+.+
T Consensus 9 Vk~L~eIll~FilrGHKT~vyLP~yY~~~~ 38 (122)
T PF14626_consen 9 VKALVEILLHFILRGHKTVVYLPKYYKNYV 38 (122)
T ss_pred HHHHHHHHHHHHhccCeeEEEChHHHhccc
Confidence 356778888888899999999988777644
No 327
>PRK13608 diacylglycerol glucosyltransferase; Provisional
Probab=25.37 E-value=1.1e+02 Score=26.02 Aligned_cols=32 Identities=6% Similarity=-0.203 Sum_probs=19.5
Q ss_pred CCeEEEEeCCCcchHHHHH--HHhCCceEEecCC
Q 029508 117 PPVTCVVSDGIMGFGRKAA--QMLGILDIQFWTA 148 (192)
Q Consensus 117 ~~~d~vI~D~~~~~~~~vA--~~lgIP~i~~~t~ 148 (192)
.+||+||+..-......+. ..+++|.+.+.+-
T Consensus 103 ~kPDvVi~~~p~~~~~~l~~~~~~~iP~~~v~td 136 (391)
T PRK13608 103 EKPDLILLTFPTPVMSVLTEQFNINIPVATVMTD 136 (391)
T ss_pred hCcCEEEECCcHHHHHHHHHhcCCCCCEEEEeCC
Confidence 5899999975443222222 3458999765443
No 328
>PRK07231 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=25.36 E-value=75 Score=24.60 Aligned_cols=21 Identities=10% Similarity=0.224 Sum_probs=17.4
Q ss_pred HHHHHHHHHhCCCeEEEEcCC
Q 029508 25 MMQVAKLLHSKGFHITFVNTE 45 (192)
Q Consensus 25 ~l~La~~La~rGh~VT~it~~ 45 (192)
-.++++.|+++|++|+.+.-.
T Consensus 18 G~~l~~~l~~~G~~V~~~~r~ 38 (251)
T PRK07231 18 GEGIARRFAAEGARVVVTDRN 38 (251)
T ss_pred HHHHHHHHHHCCCEEEEEeCC
Confidence 468999999999998887654
No 329
>PF01656 CbiA: CobQ/CobB/MinD/ParA nucleotide binding domain; InterPro: IPR002586 This entry consists of various cobyrinic acid a,c-diamide synthases. These include CbiA and CbiP from Salmonella typhimurium []., and CobQ from Rhodobacter capsulatus []. These amidases catalyse amidations to various side chains of hydrogenobyrinic acid or cobyrinic acid a,c-diamide in the biosynthesis of cobalamin (vitamin B12) from uroporphyrinogen III. Vitamin B12 is an important cofactor and an essential nutrient for many plants and animals and is primarily produced by bacteria [].; PDB: 3K9G_A 3K9H_B 3EZ9_B 3EZF_A 3EZ2_B 3EZ6_A 3EZ7_A 1G3Q_A 1G3R_A 1DTS_A ....
Probab=25.22 E-value=1.4e+02 Score=22.11 Aligned_cols=31 Identities=16% Similarity=0.268 Sum_probs=25.3
Q ss_pred CCccChHHHHHHHHHHHhCCCeEEEEcCCch
Q 029508 17 PAQGHVSPMMQVAKLLHSKGFHITFVNTEFN 47 (192)
Q Consensus 17 p~~GH~~P~l~La~~La~rGh~VT~it~~~~ 47 (192)
.|.|=-.-...||+.|+++|++|-++-.+..
T Consensus 8 GG~GKTt~a~~la~~la~~g~~VlliD~D~~ 38 (195)
T PF01656_consen 8 GGVGKTTIAANLAQALARKGKKVLLIDLDPQ 38 (195)
T ss_dssp TTSSHHHHHHHHHHHHHHTTS-EEEEEESTT
T ss_pred CCccHHHHHHHHHhccccccccccccccCcc
Confidence 5667778889999999999999999987543
No 330
>PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways. In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C ....
Probab=25.19 E-value=75 Score=25.82 Aligned_cols=21 Identities=19% Similarity=0.313 Sum_probs=17.5
Q ss_pred HHHHHHHHHHhCCCeEEEEcC
Q 029508 24 PMMQVAKLLHSKGFHITFVNT 44 (192)
Q Consensus 24 P~l~La~~La~rGh~VT~it~ 44 (192)
--+.+|..|+++|++|+++=-
T Consensus 12 aGl~~A~~L~~~G~~v~i~E~ 32 (356)
T PF01494_consen 12 AGLAAALALARAGIDVTIIER 32 (356)
T ss_dssp HHHHHHHHHHHTTCEEEEEES
T ss_pred HHHHHHHHHHhcccccccchh
Confidence 346789999999999999843
No 331
>PLN02211 methyl indole-3-acetate methyltransferase
Probab=25.02 E-value=1.8e+02 Score=23.44 Aligned_cols=40 Identities=15% Similarity=0.252 Sum_probs=28.7
Q ss_pred CCCceEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEcCCc
Q 029508 6 ARKAHAVCVPYPAQGHVSPMMQVAKLLHSKGFHITFVNTEF 46 (192)
Q Consensus 6 ~~~~~Il~~p~p~~GH~~P~l~La~~La~rGh~VT~it~~~ 46 (192)
+.+..|+++...+.+.. -...+++.|.++|++|..+.-+.
T Consensus 16 ~~~p~vvliHG~~~~~~-~w~~~~~~L~~~g~~vi~~dl~g 55 (273)
T PLN02211 16 RQPPHFVLIHGISGGSW-CWYKIRCLMENSGYKVTCIDLKS 55 (273)
T ss_pred CCCCeEEEECCCCCCcC-cHHHHHHHHHhCCCEEEEecccC
Confidence 33567888887665543 45777888999999998876543
No 332
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=25.02 E-value=1.4e+02 Score=23.26 Aligned_cols=33 Identities=30% Similarity=0.299 Sum_probs=24.1
Q ss_pred ceEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEcCCc
Q 029508 9 AHAVCVPYPAQGHVSPMMQVAKLLHSKGFHITFVNTEF 46 (192)
Q Consensus 9 ~~Il~~p~p~~GH~~P~l~La~~La~rGh~VT~it~~~ 46 (192)
.+++++.. |-+ ....++.|.++|++||++....
T Consensus 11 k~vLVIGg---G~v--a~~ka~~Ll~~ga~V~VIs~~~ 43 (202)
T PRK06718 11 KRVVIVGG---GKV--AGRRAITLLKYGAHIVVISPEL 43 (202)
T ss_pred CEEEEECC---CHH--HHHHHHHHHHCCCeEEEEcCCC
Confidence 36677653 333 3678899999999999997653
No 333
>PF09140 MipZ: ATPase MipZ; InterPro: IPR015223 Cell division in bacteria is facilitated by a polymeric ring structure, the Z ring, composed of tubulin-like FtsZ protofilaments. Correct positioning of the division plane is a prerequisite for the generation of daughter cells with a normal chromosome complement. In Caulobacter crescentus MipZ, an essential protein, coordinates and regulates the assembly of the FtsZ cytokinetic ring during cell division. MipZ, forms a complex with the partitioning protein ParB near the origin of replication and localizes with the duplicated origin regions to the cell poles. MipZ also directly interferes with FtsZ polymerisation, thereby restricting FtsZ ring formation to mid-cell, the region of lowest MipZ concentration. In eukaryotes members of this entry belong to the Mrp/NBP35 ATP-binding protein family, and specifically the NUBP2/CFD1 subfamily. This includes the cytosolic Fe-S cluster assembly factor Cfd1, which is a component of the cytosolic iron-sulphur (Fe/S) protein assembly machinery. This protein is required for maturation of extra-mitochondrial Fe/S proteins. It may bind and transfer a labile 4Fe-4S cluster to target apoproteins. Cfd1 is also required for biogenesis and export of both ribosomal subunits, suggesting a role in assembly of the Fe/S clusters in RLI1, a protein which performs rRNA processing and ribosome export. ; PDB: 2XIT_B 2XJ4_A 2XJ9_A.
Probab=25.00 E-value=1.2e+02 Score=24.85 Aligned_cols=39 Identities=15% Similarity=0.273 Sum_probs=26.0
Q ss_pred eEEEEcC--CCccChHHHHHHHHHHHhCCCeEEEEcCCchh
Q 029508 10 HAVCVPY--PAQGHVSPMMQVAKLLHSKGFHITFVNTEFNH 48 (192)
Q Consensus 10 ~Il~~p~--p~~GH~~P~l~La~~La~rGh~VT~it~~~~~ 48 (192)
||.++.. .|.|=-.-..+||-+|+..|++|-++-.+...
T Consensus 1 HiIvV~sgKGGvGKSTva~~lA~aLa~~G~kVg~lD~Di~q 41 (261)
T PF09140_consen 1 HIIVVGSGKGGVGKSTVAVNLAVALARMGKKVGLLDLDIRQ 41 (261)
T ss_dssp EEEEEE-SSTTTTHHHHHHHHHHHHHCTT--EEEEE--TTT
T ss_pred CEEEEecCCCCCcHHHHHHHHHHHHHHCCCeEEEEecCCCC
Confidence 4444443 56677788999999999999999999766533
No 334
>PLN02605 monogalactosyldiacylglycerol synthase
Probab=24.92 E-value=1.9e+02 Score=24.47 Aligned_cols=48 Identities=13% Similarity=-0.108 Sum_probs=0.0
Q ss_pred HHHHHHHhCcHHHHHHHHHhhcCCCCCCCCeEEEEeCCCcch----HHHHHHHh------CCceEEecC
Q 029508 89 LSDSIRKNGLAPFLELLGKLNSSADDQVPPVTCVVSDGIMGF----GRKAAQML------GILDIQFWT 147 (192)
Q Consensus 89 ~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~d~vI~D~~~~~----~~~vA~~l------gIP~i~~~t 147 (192)
....+...+...+.+++++ .+||+||+ ..+| ...++..+ ++|+++..|
T Consensus 80 ~~~~~~~~~~~~l~~~i~~---------~~pDvIi~--thp~~~~~~~~~l~~~~~~~~~~~p~~~~~t 137 (382)
T PLN02605 80 YFAATSAFVAREVAKGLMK---------YKPDIIVS--VHPLMQHVPLRVLRWQGKELGKKIPFTTVVT 137 (382)
T ss_pred HHHHHHHHHHHHHHHHHHh---------cCcCEEEE--eCcCcccCHHHHHHHHhhccCCCCCEEEEEC
No 335
>PF00975 Thioesterase: Thioesterase domain; InterPro: IPR001031 Thioesterase domains often occur integrated in or associated with peptide synthetases which are involved in the non-ribosomal synthesis of peptide antibiotics []. Thioesterases are required for the addition of the last amino acid to the peptide antibiotic, thereby forming a cyclic antibiotic. Next to the operons encoding these enzymes, in almost all cases, are genes that encode proteins that have similarity to the type II fatty acid thioesterases of vertebrates.; GO: 0016788 hydrolase activity, acting on ester bonds, 0009058 biosynthetic process; PDB: 2RON_A 2K2Q_B 3LCR_B 2HFJ_B 1MNQ_A 1MN6_B 1MNA_B 2HFK_B 2H7Y_B 2H7X_A ....
Probab=24.91 E-value=74 Score=24.37 Aligned_cols=32 Identities=25% Similarity=0.397 Sum_probs=23.3
Q ss_pred eEEEEcCCCccChHHHHHHHHHHHhCCCeEEEE
Q 029508 10 HAVCVPYPAQGHVSPMMQVAKLLHSKGFHITFV 42 (192)
Q Consensus 10 ~Il~~p~p~~GH~~P~l~La~~La~rGh~VT~i 42 (192)
.|.++| |+.|+...+.+|++.|..++..|..+
T Consensus 2 ~lf~~p-~~gG~~~~y~~la~~l~~~~~~v~~i 33 (229)
T PF00975_consen 2 PLFCFP-PAGGSASSYRPLARALPDDVIGVYGI 33 (229)
T ss_dssp EEEEES-STTCSGGGGHHHHHHHTTTEEEEEEE
T ss_pred eEEEEc-CCccCHHHHHHHHHhCCCCeEEEEEE
Confidence 345555 77799999999999999873344444
No 336
>PRK11524 putative methyltransferase; Provisional
Probab=24.83 E-value=1.2e+02 Score=24.90 Aligned_cols=49 Identities=18% Similarity=0.002 Sum_probs=35.5
Q ss_pred HHHHHHHHhhcCCCCCCCCeEEEEeCCCcchH--HHHHHHhCCceEEecCCchHHHHHH
Q 029508 100 PFLELLGKLNSSADDQVPPVTCVVSDGIMGFG--RKAAQMLGILDIQFWTASACGMMGY 156 (192)
Q Consensus 100 ~~~~ll~~l~~~~~~~~~~~d~vI~D~~~~~~--~~vA~~lgIP~i~~~t~~a~~~~~~ 156 (192)
.++++++..+ ...=+|.|.|++.+ ..+|+++|--++.+-...-+.-.+.
T Consensus 197 L~erlI~~~S--------~~GD~VLDPF~GSGTT~~AA~~lgR~~IG~Ei~~~Y~~~a~ 247 (284)
T PRK11524 197 LLKRIILASS--------NPGDIVLDPFAGSFTTGAVAKASGRKFIGIEINSEYIKMGL 247 (284)
T ss_pred HHHHHHHHhC--------CCCCEEEECCCCCcHHHHHHHHcCCCEEEEeCCHHHHHHHH
Confidence 4566666542 34457899999654 5788999999999998887655443
No 337
>PRK00881 purH bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase; Provisional
Probab=24.83 E-value=3.5e+02 Score=24.56 Aligned_cols=27 Identities=26% Similarity=0.308 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHhCCCeEEEEcCCchhhhh
Q 029508 23 SPMMQVAKLLHSKGFHITFVNTEFNHRRL 51 (192)
Q Consensus 23 ~P~l~La~~La~rGh~VT~it~~~~~~~~ 51 (192)
.=+.++++.|.+.|+++ +.|..+.+.+
T Consensus 15 ~~iv~lAk~L~~lGfeI--~AT~GTak~L 41 (513)
T PRK00881 15 TGIVEFAKALVELGVEI--LSTGGTAKLL 41 (513)
T ss_pred ccHHHHHHHHHHCCCEE--EEcchHHHHH
Confidence 34789999999999887 4566666655
No 338
>PRK08558 adenine phosphoribosyltransferase; Provisional
Probab=24.60 E-value=1.3e+02 Score=24.21 Aligned_cols=29 Identities=14% Similarity=0.048 Sum_probs=21.9
Q ss_pred CCeEEEEe--CCCcchHHHHHHHhCCceEEe
Q 029508 117 PPVTCVVS--DGIMGFGRKAAQMLGILDIQF 145 (192)
Q Consensus 117 ~~~d~vI~--D~~~~~~~~vA~~lgIP~i~~ 145 (192)
.++|+|+. .-..+++..+|..+|+|.+..
T Consensus 110 ~~~D~Vvtv~~~GI~lA~~lA~~L~~p~vi~ 140 (238)
T PRK08558 110 LRVDVVLTAATDGIPLAVAIASYFGADLVYA 140 (238)
T ss_pred CCCCEEEEECcccHHHHHHHHHHHCcCEEEE
Confidence 36888876 223467789999999999874
No 339
>PRK10037 cell division protein; Provisional
Probab=24.60 E-value=1.6e+02 Score=23.39 Aligned_cols=37 Identities=14% Similarity=-0.046 Sum_probs=28.4
Q ss_pred eEEEEcC-CCccChHHHHHHHHHHHhCCCeEEEEcCCc
Q 029508 10 HAVCVPY-PAQGHVSPMMQVAKLLHSKGFHITFVNTEF 46 (192)
Q Consensus 10 ~Il~~p~-p~~GH~~P~l~La~~La~rGh~VT~it~~~ 46 (192)
.|.+... .|.|=-.-...||..|+++|++|-++=.+.
T Consensus 3 ~iav~n~KGGvGKTT~a~nLA~~La~~G~rVLlID~D~ 40 (250)
T PRK10037 3 ILGLQGVRGGVGTTSITAALAWSLQMLGENVLVIDACP 40 (250)
T ss_pred EEEEecCCCCccHHHHHHHHHHHHHhcCCcEEEEeCCh
Confidence 3444444 556777889999999999999999996554
No 340
>PRK05234 mgsA methylglyoxal synthase; Validated
Probab=24.47 E-value=2.9e+02 Score=20.25 Aligned_cols=101 Identities=8% Similarity=0.035 Sum_probs=57.5
Q ss_pred ceEEEEcCCCccChHHHHHHHHHHHhC--CCeEEEEcCCchhhhhhhccCCCccCCCCCceeEecCCCCCCCCCCCCCCH
Q 029508 9 AHAVCVPYPAQGHVSPMMQVAKLLHSK--GFHITFVNTEFNHRRLIRSKGPEYVKGLPDFRFETIPDGLPPSDRDATQDV 86 (192)
Q Consensus 9 ~~Il~~p~p~~GH~~P~l~La~~La~r--Gh~VT~it~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~ 86 (192)
.+|++.. .-+.-.-++++++.|.+. |+++ +.|....+.+.+. .++.+..+-. -+.+
T Consensus 5 ~~v~lsv--~d~dK~~l~~~a~~l~~ll~Gf~l--~AT~gTa~~L~~~---------~Gi~v~~vi~-~~~g-------- 62 (142)
T PRK05234 5 KRIALIA--HDHKKDDLVAWVKAHKDLLEQHEL--YATGTTGGLIQEA---------TGLDVTRLLS-GPLG-------- 62 (142)
T ss_pred cEEEEEE--eccchHHHHHHHHHHHHHhcCCEE--EEeChHHHHHHhc---------cCCeeEEEEc-CCCC--------
Confidence 3444433 446667799999999999 9985 5666666655321 1344333210 0111
Q ss_pred HHHHHHHHHhCcHHHHHHHHHhhcCCCCCCCCeEEEEe--CCCcc--------hHHHHHHHhCCceEEecCCch
Q 029508 87 PALSDSIRKNGLAPFLELLGKLNSSADDQVPPVTCVVS--DGIMG--------FGRKAAQMLGILDIQFWTASA 150 (192)
Q Consensus 87 ~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~d~vI~--D~~~~--------~~~~vA~~lgIP~i~~~t~~a 150 (192)
..+.+.+++++ .++|+||. |.... -....|-++|||++.-..+.-
T Consensus 63 ----------g~~~i~~~I~~---------g~i~lVInt~dp~~~~~~~~D~~~IRR~Av~~~IP~~T~l~tA~ 117 (142)
T PRK05234 63 ----------GDQQIGALIAE---------GKIDMLIFFRDPLTAQPHDPDVKALLRLADVWNIPVATNRATAD 117 (142)
T ss_pred ----------CchhHHHHHHc---------CceeEEEEecCCCCCCcccchHHHHHHHHHHcCCCEEcCHHHHH
Confidence 12233445543 57999988 53221 124568899999986544443
No 341
>cd01147 HemV-2 Metal binding protein HemV-2. These proteins are predicted to function as initial receptors in ABC transport of metal ions. They belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind the metal ion in the cleft between these domains. In addition, these proteins sometimes have a low complexity region containing a metal-binding histidine-rich motif (repetitive HDH sequence).
Probab=24.44 E-value=1.2e+02 Score=23.89 Aligned_cols=31 Identities=13% Similarity=-0.042 Sum_probs=21.1
Q ss_pred CeEEEEeCCCcch--HH-HHHHHhCCceEEecCC
Q 029508 118 PVTCVVSDGIMGF--GR-KAAQMLGILDIQFWTA 148 (192)
Q Consensus 118 ~~d~vI~D~~~~~--~~-~vA~~lgIP~i~~~t~ 148 (192)
+||+||....... .. .+.+..|+|++.+...
T Consensus 74 ~PDLIi~~~~~~~~~~~~~l~~~~gipvv~~~~~ 107 (262)
T cd01147 74 KPDVVIDVGSDDPTSIADDLQKKTGIPVVVLDGG 107 (262)
T ss_pred CCCEEEEecCCccchhHHHHHHhhCCCEEEEecC
Confidence 7999998754432 22 3445589999888764
No 342
>PRK06603 enoyl-(acyl carrier protein) reductase; Provisional
Probab=24.40 E-value=1.7e+02 Score=23.13 Aligned_cols=35 Identities=17% Similarity=0.134 Sum_probs=25.4
Q ss_pred CceEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEc
Q 029508 8 KAHAVCVPYPAQGHVSPMMQVAKLLHSKGFHITFVN 43 (192)
Q Consensus 8 ~~~Il~~p~p~~GH~~P~l~La~~La~rGh~VT~it 43 (192)
+.++++++..+.|. ---.++|++|+++|++|.+..
T Consensus 7 ~~k~~lITGas~~~-GIG~a~a~~la~~G~~v~~~~ 41 (260)
T PRK06603 7 QGKKGLITGIANNM-SISWAIAQLAKKHGAELWFTY 41 (260)
T ss_pred CCcEEEEECCCCCc-chHHHHHHHHHHcCCEEEEEe
Confidence 34778888776531 135688999999999988764
No 343
>TIGR02622 CDP_4_6_dhtase CDP-glucose 4,6-dehydratase. Members of this protein family are CDP-glucose 4,6-dehydratase from a variety of Gram-negative and Gram-positive bacteria. Members typically are encoded next to a gene that encodes a glucose-1-phosphate cytidylyltransferase, which produces the substrate, CDP-D-glucose, used by this enzyme to produce CDP-4-keto-6-deoxyglucose.
Probab=24.39 E-value=1.3e+02 Score=24.96 Aligned_cols=30 Identities=10% Similarity=-0.019 Sum_probs=21.4
Q ss_pred eEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEc
Q 029508 10 HAVCVPYPAQGHVSPMMQVAKLLHSKGFHITFVN 43 (192)
Q Consensus 10 ~Il~~p~p~~GH~~P~l~La~~La~rGh~VT~it 43 (192)
+|++.. +.|.+ -.+++++|+++||+|+.+.
T Consensus 6 ~ilItG--atG~I--G~~l~~~L~~~G~~V~~~~ 35 (349)
T TIGR02622 6 KVLVTG--HTGFK--GSWLSLWLLELGAEVYGYS 35 (349)
T ss_pred EEEEEC--CCChh--HHHHHHHHHHCCCEEEEEe
Confidence 555554 33433 3788999999999998775
No 344
>CHL00194 ycf39 Ycf39; Provisional
Probab=24.37 E-value=72 Score=26.25 Aligned_cols=32 Identities=13% Similarity=0.252 Sum_probs=22.5
Q ss_pred eEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEcCC
Q 029508 10 HAVCVPYPAQGHVSPMMQVAKLLHSKGFHITFVNTE 45 (192)
Q Consensus 10 ~Il~~p~p~~GH~~P~l~La~~La~rGh~VT~it~~ 45 (192)
+|+++. +.|. --.+|+++|.++||+|+.++-.
T Consensus 2 kIlVtG--atG~--iG~~lv~~Ll~~g~~V~~l~R~ 33 (317)
T CHL00194 2 SLLVIG--ATGT--LGRQIVRQALDEGYQVRCLVRN 33 (317)
T ss_pred EEEEEC--CCcH--HHHHHHHHHHHCCCeEEEEEcC
Confidence 455544 4453 3456899999999999988643
No 345
>CHL00175 minD septum-site determining protein; Validated
Probab=24.32 E-value=1.8e+02 Score=23.47 Aligned_cols=39 Identities=5% Similarity=0.306 Sum_probs=29.8
Q ss_pred CceEEEEcC--CCccChHHHHHHHHHHHhCCCeEEEEcCCc
Q 029508 8 KAHAVCVPY--PAQGHVSPMMQVAKLLHSKGFHITFVNTEF 46 (192)
Q Consensus 8 ~~~Il~~p~--p~~GH~~P~l~La~~La~rGh~VT~it~~~ 46 (192)
+.+++.+.. +|.|=-.-...||..|+++|.+|-++-.+.
T Consensus 14 ~~~vi~v~s~KGGvGKTt~a~nLA~~La~~g~~vlliD~D~ 54 (281)
T CHL00175 14 MSRIIVITSGKGGVGKTTTTANLGMSIARLGYRVALIDADI 54 (281)
T ss_pred CceEEEEEcCCCCCcHHHHHHHHHHHHHhCCCeEEEEeCCC
Confidence 445554443 666777889999999999999998886553
No 346
>TIGR01689 EcbF-BcbF capsule biosynthesis phosphatase. Due to the likelihood that the substrates of these enzymes are different depending on the nature of the particular polysaccharides associated with each species, this model has been classified as a subfamily despite the close homology.
Probab=24.31 E-value=1.1e+02 Score=22.00 Aligned_cols=26 Identities=12% Similarity=0.252 Sum_probs=20.5
Q ss_pred HHHHHHHHHHhCCCeEEEEcCCchhh
Q 029508 24 PMMQVAKLLHSKGFHITFVNTEFNHR 49 (192)
Q Consensus 24 P~l~La~~La~rGh~VT~it~~~~~~ 49 (192)
...+..++|.++||.|.++|+-....
T Consensus 28 ~~ie~L~~l~~~G~~IiiaTGR~~~~ 53 (126)
T TIGR01689 28 AVIEKLRHYKALGFEIVISSSRNMRT 53 (126)
T ss_pred HHHHHHHHHHHCCCEEEEECCCCchh
Confidence 46677777789999999999876543
No 347
>PRK02910 light-independent protochlorophyllide reductase subunit B; Provisional
Probab=24.25 E-value=1.3e+02 Score=27.19 Aligned_cols=26 Identities=23% Similarity=0.245 Sum_probs=21.2
Q ss_pred CCeEEEEeCCCcchHHHHHHHhCCceEEe
Q 029508 117 PPVTCVVSDGIMGFGRKAAQMLGILDIQF 145 (192)
Q Consensus 117 ~~~d~vI~D~~~~~~~~vA~~lgIP~i~~ 145 (192)
.+||+||.+. +...+|+++|||++.+
T Consensus 361 ~~PdliiG~~---~er~~a~~lgiP~~~i 386 (519)
T PRK02910 361 AAPELVLGTQ---MERHSAKRLGIPCAVI 386 (519)
T ss_pred cCCCEEEEcc---hHHHHHHHcCCCEEEe
Confidence 4689999776 5677999999999765
No 348
>PF00205 TPP_enzyme_M: Thiamine pyrophosphate enzyme, central domain; InterPro: IPR012000 A number of enzymes require thiamine pyrophosphate (TPP) (vitamin B1) as a cofactor. It has been shown [] that some of these enzymes are structurally related. This central domain of TPP enzymes contains a 2-fold Rossman fold. ; GO: 0000287 magnesium ion binding, 0030976 thiamine pyrophosphate binding; PDB: 1OZH_C 1OZF_B 1OZG_B 2Q29_B 2Q28_A 2Q27_B 1OVM_B 1PVD_A 1PYD_B 2VK1_C ....
Probab=24.18 E-value=1.1e+02 Score=21.67 Aligned_cols=31 Identities=16% Similarity=-0.023 Sum_probs=20.1
Q ss_pred CCeEEEEeCCCcc----h--HHHHHHHhCCceEEecCC
Q 029508 117 PPVTCVVSDGIMG----F--GRKAAQMLGILDIQFWTA 148 (192)
Q Consensus 117 ~~~d~vI~D~~~~----~--~~~vA~~lgIP~i~~~t~ 148 (192)
.+| ++|.+.... + ...+|+++|+|++..+..
T Consensus 12 ~rP-~il~G~g~~~~~a~~~l~~lae~~~~Pv~~t~~~ 48 (137)
T PF00205_consen 12 KRP-VILAGRGARRSGAAEELRELAEKLGIPVATTPMG 48 (137)
T ss_dssp SSE-EEEE-HHHHHTTCHHHHHHHHHHHTSEEEEEGGG
T ss_pred CCE-EEEEcCCcChhhHHHHHHHHHHHHCCCEEecCcc
Confidence 467 666654432 1 357999999999876543
No 349
>cd02032 Bchl_like This family of proteins contains bchL and chlL. Protochlorophyllide reductase catalyzes the reductive formation of chlorophyllide from protochlorophyllide during biosynthesis of chlorophylls and bacteriochlorophylls. Three genes, bchL, bchN and bchB, are involved in light-independent protochlorophyllide reduction in bacteriochlorophyll biosynthesis. In cyanobacteria, algae, and gymnosperms, three similar genes, chlL, chlN and chlB are involved in protochlorophyllide reduction during chlorophylls biosynthesis. BchL/chlL, bchN/chlN and bchB/chlB exhibit significant sequence similarity to the nifH, nifD and nifK subunits of nitrogenase, respectively. Nitrogenase catalyzes the reductive formation of ammonia from dinitrogen.
Probab=24.09 E-value=1.6e+02 Score=23.56 Aligned_cols=36 Identities=8% Similarity=0.075 Sum_probs=29.2
Q ss_pred EEEEcCCCccChHHHHHHHHHHHhCCCeEEEEcCCc
Q 029508 11 AVCVPYPAQGHVSPMMQVAKLLHSKGFHITFVNTEF 46 (192)
Q Consensus 11 Il~~p~p~~GH~~P~l~La~~La~rGh~VT~it~~~ 46 (192)
|.+..=.|.|--.-...||..|+++|.+|-++=.+.
T Consensus 3 i~v~gKGGvGKTT~a~nLA~~la~~G~rvlliD~Dp 38 (267)
T cd02032 3 LAVYGKGGIGKSTTSSNLSVALAKRGKKVLQIGCDP 38 (267)
T ss_pred EEEecCCCCCHHHHHHHHHHHHHHCCCcEEEEecCC
Confidence 555544677888999999999999999999886553
No 350
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=24.04 E-value=2.2e+02 Score=19.90 Aligned_cols=40 Identities=18% Similarity=0.221 Sum_probs=33.5
Q ss_pred eEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEcCCchhh
Q 029508 10 HAVCVPYPAQGHVSPMMQVAKLLHSKGFHITFVNTEFNHR 49 (192)
Q Consensus 10 ~Il~~p~p~~GH~~P~l~La~~La~rGh~VT~it~~~~~~ 49 (192)
+++++..+|.|--.-...++..++.+|-.|.++..+....
T Consensus 1 ~~~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~e~~~~ 40 (165)
T cd01120 1 LILVFGPTGSGKTTLALQLALNIATKGGKVVYVDIEEEIE 40 (165)
T ss_pred CeeEeCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCcchH
Confidence 3567778899998899999999999999999998876544
No 351
>PRK12825 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=24.00 E-value=98 Score=23.69 Aligned_cols=33 Identities=15% Similarity=0.007 Sum_probs=23.1
Q ss_pred ceEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEcCC
Q 029508 9 AHAVCVPYPAQGHVSPMMQVAKLLHSKGFHITFVNTE 45 (192)
Q Consensus 9 ~~Il~~p~p~~GH~~P~l~La~~La~rGh~VT~it~~ 45 (192)
.++++.. +-|+ --..|++.|+++||+|++++..
T Consensus 7 ~~vlItG--asg~--iG~~l~~~l~~~g~~v~~~~~~ 39 (249)
T PRK12825 7 RVALVTG--AARG--LGRAIALRLARAGADVVVHYRS 39 (249)
T ss_pred CEEEEeC--CCch--HHHHHHHHHHHCCCeEEEEeCC
Confidence 3555543 4555 3578999999999999775544
No 352
>cd02067 B12-binding B12 binding domain (B12-BD). This domain binds different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide, it is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins.
Probab=23.90 E-value=1.3e+02 Score=20.71 Aligned_cols=36 Identities=22% Similarity=0.279 Sum_probs=23.7
Q ss_pred CceEEEEcCCCccChHHHHHHHHHHHhCCC-eEEEEc
Q 029508 8 KAHAVCVPYPAQGHVSPMMQVAKLLHSKGF-HITFVN 43 (192)
Q Consensus 8 ~~~Il~~p~p~~GH~~P~l~La~~La~rGh-~VT~it 43 (192)
++.++.+......|+....++++.+.+++. ++.++.
T Consensus 50 ~pdvV~iS~~~~~~~~~~~~~i~~l~~~~~~~~~i~v 86 (119)
T cd02067 50 DADAIGLSGLLTTHMTLMKEVIEELKEAGLDDIPVLV 86 (119)
T ss_pred CCCEEEEeccccccHHHHHHHHHHHHHcCCCCCeEEE
Confidence 456666666666677777777777777765 555443
No 353
>PRK06194 hypothetical protein; Provisional
Probab=23.89 E-value=81 Score=25.21 Aligned_cols=20 Identities=10% Similarity=0.282 Sum_probs=16.9
Q ss_pred HHHHHHHHHhCCCeEEEEcC
Q 029508 25 MMQVAKLLHSKGFHITFVNT 44 (192)
Q Consensus 25 ~l~La~~La~rGh~VT~it~ 44 (192)
-.+++++|+++|++|+++.-
T Consensus 19 G~~la~~l~~~G~~V~~~~r 38 (287)
T PRK06194 19 GLAFARIGAALGMKLVLADV 38 (287)
T ss_pred HHHHHHHHHHCCCEEEEEeC
Confidence 56799999999999987754
No 354
>PRK04020 rps2P 30S ribosomal protein S2; Provisional
Probab=23.86 E-value=1.1e+02 Score=24.18 Aligned_cols=31 Identities=23% Similarity=0.142 Sum_probs=22.6
Q ss_pred CeE-EEEeCCCc-chHHHHHHHhCCceEEecCC
Q 029508 118 PVT-CVVSDGIM-GFGRKAAQMLGILDIQFWTA 148 (192)
Q Consensus 118 ~~d-~vI~D~~~-~~~~~vA~~lgIP~i~~~t~ 148 (192)
.|| +||.|... .-+..-|.++|||+|.+.-+
T Consensus 114 ~Pdliiv~dp~~~~~AI~EA~kl~IP~IaivDT 146 (204)
T PRK04020 114 EPDVVVVTDPRGDAQAVKEAIEVGIPVVALCDT 146 (204)
T ss_pred CCCEEEEECCcccHHHHHHHHHhCCCEEEEEeC
Confidence 355 55558766 44668899999999998743
No 355
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=23.82 E-value=1.8e+02 Score=25.54 Aligned_cols=39 Identities=10% Similarity=0.164 Sum_probs=31.7
Q ss_pred eEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEcCCchh
Q 029508 10 HAVCVPYPAQGHVSPMMQVAKLLHSKGFHITFVNTEFNH 48 (192)
Q Consensus 10 ~Il~~p~p~~GH~~P~l~La~~La~rGh~VT~it~~~~~ 48 (192)
-++++...|.|=-.-+..||..+..+|++|.+++.+.+.
T Consensus 208 ii~lvGptGvGKTTt~akLA~~l~~~g~~V~lItaDtyR 246 (407)
T PRK12726 208 IISLIGQTGVGKTTTLVKLGWQLLKQNRTVGFITTDTFR 246 (407)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeCCccC
Confidence 344555567788888999999999999999999998764
No 356
>TIGR02015 BchY chlorophyllide reductase subunit Y. This model represents the Y subunit of the three-subunit enzyme, (bacterio)chlorophyllide reductase. This enzyme is responsible for the reduction of the chlorin B-ring and is closely related to the protochlorophyllide reductase complex which reduces the D-ring. Both of these complexes in turn are homologous to nitrogenase.
Probab=23.81 E-value=1.1e+02 Score=26.69 Aligned_cols=27 Identities=15% Similarity=-0.041 Sum_probs=21.7
Q ss_pred CCeEEEEeCCCcchHHHHHHHhCCceEEec
Q 029508 117 PPVTCVVSDGIMGFGRKAAQMLGILDIQFW 146 (192)
Q Consensus 117 ~~~d~vI~D~~~~~~~~vA~~lgIP~i~~~ 146 (192)
.++|++|... -...+|+++|||.+.+.
T Consensus 354 ~~pDllig~s---~~~~~A~k~gIP~vr~g 380 (422)
T TIGR02015 354 FEPDLAIGTT---PLVQFAKEHGIPALYFT 380 (422)
T ss_pred CCCCEEEcCC---cchHHHHHcCCCEEEec
Confidence 4899999873 46678999999998743
No 357
>PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated
Probab=23.76 E-value=89 Score=25.65 Aligned_cols=33 Identities=15% Similarity=0.182 Sum_probs=23.6
Q ss_pred ceEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEcCCc
Q 029508 9 AHAVCVPYPAQGHVSPMMQVAKLLHSKGFHITFVNTEF 46 (192)
Q Consensus 9 ~~Il~~p~p~~GH~~P~l~La~~La~rGh~VT~it~~~ 46 (192)
.+|.++-....| ..+++.|+++||+|+++....
T Consensus 2 mkI~iiG~G~mG-----~~~a~~L~~~g~~V~~~~r~~ 34 (325)
T PRK00094 2 MKIAVLGAGSWG-----TALAIVLARNGHDVTLWARDP 34 (325)
T ss_pred CEEEEECCCHHH-----HHHHHHHHhCCCEEEEEECCH
Confidence 367776543333 467889999999999987653
No 358
>PRK11259 solA N-methyltryptophan oxidase; Provisional
Probab=23.75 E-value=77 Score=26.48 Aligned_cols=30 Identities=10% Similarity=0.135 Sum_probs=21.5
Q ss_pred eEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEcC
Q 029508 10 HAVCVPYPAQGHVSPMMQVAKLLHSKGFHITFVNT 44 (192)
Q Consensus 10 ~Il~~p~p~~GH~~P~l~La~~La~rGh~VT~it~ 44 (192)
.|+++-.. +--+.+|.+|+++|++|+++--
T Consensus 5 dv~IIGgG-----i~G~s~A~~L~~~g~~V~lie~ 34 (376)
T PRK11259 5 DVIVIGLG-----SMGSAAGYYLARRGLRVLGLDR 34 (376)
T ss_pred cEEEECCC-----HHHHHHHHHHHHCCCeEEEEec
Confidence 45555433 3346788999999999999854
No 359
>PRK12827 short chain dehydrogenase; Provisional
Probab=23.64 E-value=82 Score=24.30 Aligned_cols=30 Identities=13% Similarity=0.222 Sum_probs=20.9
Q ss_pred eEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEc
Q 029508 10 HAVCVPYPAQGHVSPMMQVAKLLHSKGFHITFVN 43 (192)
Q Consensus 10 ~Il~~p~p~~GH~~P~l~La~~La~rGh~VT~it 43 (192)
++++.- +.|.+ -..+++.|+++|++|+++.
T Consensus 8 ~ilItG--asg~i--G~~la~~l~~~g~~v~~~~ 37 (249)
T PRK12827 8 RVLITG--GSGGL--GRAIAVRLAADGADVIVLD 37 (249)
T ss_pred EEEEEC--CCChH--HHHHHHHHHHCCCeEEEEc
Confidence 444443 33444 3689999999999998864
No 360
>PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain. It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D ....
Probab=23.57 E-value=2.2e+02 Score=18.51 Aligned_cols=31 Identities=16% Similarity=0.239 Sum_probs=22.3
Q ss_pred EEEEcCCCccChHHHHHHHHHHHhCC---CeEEEEcCCc
Q 029508 11 AVCVPYPAQGHVSPMMQVAKLLHSKG---FHITFVNTEF 46 (192)
Q Consensus 11 Il~~p~p~~GH~~P~l~La~~La~rG---h~VT~it~~~ 46 (192)
|.++ |.|++ -..|++.|+++| ++|++++...
T Consensus 2 I~iI---G~G~m--g~al~~~l~~~g~~~~~v~~~~~r~ 35 (96)
T PF03807_consen 2 IGII---GAGNM--GSALARGLLASGIKPHEVIIVSSRS 35 (96)
T ss_dssp EEEE---STSHH--HHHHHHHHHHTTS-GGEEEEEEESS
T ss_pred EEEE---CCCHH--HHHHHHHHHHCCCCceeEEeeccCc
Confidence 4454 45553 567889999999 9999875443
No 361
>PF02302 PTS_IIB: PTS system, Lactose/Cellobiose specific IIB subunit; InterPro: IPR003501 The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. The lactose/cellobiose-specific family are one of four structurally and functionally distinct group IIB PTS system cytoplasmic enzymes. The fold of IIB cellobiose shows similar structure to mammalian tyrosine phosphatases. This signature is often found downstream of IPR003352 from INTERPRO.; GO: 0008982 protein-N(PI)-phosphohistidine-sugar phosphotransferase activity, 0009401 phosphoenolpyruvate-dependent sugar phosphotransferase system; PDB: 1TVM_A 2WY2_D 1IIB_A 2WWV_D 1H9C_A 1E2B_A 2L2Q_A 2KYR_A 3CZC_A 3NBM_A ....
Probab=23.48 E-value=1.4e+02 Score=19.29 Aligned_cols=36 Identities=14% Similarity=0.140 Sum_probs=28.4
Q ss_pred eEEEEcCCCccChHHH-HHHHHHHHhCCCeEEEEcCC
Q 029508 10 HAVCVPYPAQGHVSPM-MQVAKLLHSKGFHITFVNTE 45 (192)
Q Consensus 10 ~Il~~p~p~~GH~~P~-l~La~~La~rGh~VT~it~~ 45 (192)
+|++++..|.|.-.-. ..+=+.+.++|.+++.....
T Consensus 1 kIlvvC~~Gi~TS~~~~~~i~~~~~~~gi~~~~~~~~ 37 (90)
T PF02302_consen 1 KILVVCGSGIGTSLMVANKIKKALKELGIEVEVSAGS 37 (90)
T ss_dssp EEEEEESSSSHHHHHHHHHHHHHHHHTTECEEEEEEE
T ss_pred CEEEECCChHHHHHHHHHHHHHHHHhccCceEEEEec
Confidence 6888998888876666 77778888899887777655
No 362
>COG1348 NifH Nitrogenase subunit NifH (ATPase) [Inorganic ion transport and metabolism]
Probab=23.46 E-value=2.2e+02 Score=23.40 Aligned_cols=41 Identities=12% Similarity=0.080 Sum_probs=35.3
Q ss_pred ceEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEcCCchhh
Q 029508 9 AHAVCVPYPAQGHVSPMMQVAKLLHSKGFHITFVNTEFNHR 49 (192)
Q Consensus 9 ~~Il~~p~p~~GH~~P~l~La~~La~rGh~VT~it~~~~~~ 49 (192)
.+|+++-=.|.|--.-.-.++.+|+..|++|-++.-++.++
T Consensus 2 r~iAiYGKGGIGKSTts~N~aAAla~~GkkVl~vGCDPKaD 42 (278)
T COG1348 2 RQIAIYGKGGIGKSTTSQNLAAALAELGKKVLIVGCDPKAD 42 (278)
T ss_pred ceEEEecCCCcCcchhHHHHHHHHHHcCCeEEEEcCCCCcc
Confidence 46788888888888899999999999999999998776554
No 363
>PLN02293 adenine phosphoribosyltransferase
Probab=23.43 E-value=2e+02 Score=22.15 Aligned_cols=30 Identities=17% Similarity=0.191 Sum_probs=21.9
Q ss_pred CCeEEEEe-CC-CcchHHHHHHHhCCceEEec
Q 029508 117 PPVTCVVS-DG-IMGFGRKAAQMLGILDIQFW 146 (192)
Q Consensus 117 ~~~d~vI~-D~-~~~~~~~vA~~lgIP~i~~~ 146 (192)
.++|+|+. |. -+.++..+|.++|+|.+...
T Consensus 61 ~~~d~Ivg~e~~Gi~lA~~lA~~Lg~p~v~~r 92 (187)
T PLN02293 61 MGISVVAGIEARGFIFGPPIALAIGAKFVPLR 92 (187)
T ss_pred cCCCEEEEeCCCchHHHHHHHHHHCCCEEEEE
Confidence 35788876 33 23567899999999987544
No 364
>PRK00889 adenylylsulfate kinase; Provisional
Probab=23.42 E-value=2.2e+02 Score=20.96 Aligned_cols=39 Identities=10% Similarity=0.191 Sum_probs=32.0
Q ss_pred eEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEcCCchh
Q 029508 10 HAVCVPYPAQGHVSPMMQVAKLLHSKGFHITFVNTEFNH 48 (192)
Q Consensus 10 ~Il~~p~p~~GH~~P~l~La~~La~rGh~VT~it~~~~~ 48 (192)
-|++.-.+|.|=-.-...|++.|...|.+|.++..+...
T Consensus 6 ~i~~~G~~GsGKST~a~~la~~l~~~g~~v~~id~D~~~ 44 (175)
T PRK00889 6 TVWFTGLSGAGKTTIARALAEKLREAGYPVEVLDGDAVR 44 (175)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEcCccHH
Confidence 456777799999888999999999899999988776443
No 365
>TIGR01286 nifK nitrogenase molybdenum-iron protein beta chain. This model represents the majority of known sequences of the nitrogenase molybdenum-iron protein beta subunit. A distinct clade in a phylogenetic tree contains molybdenum-iron, vanadium-iron, and iron-iron forms of nitrogenase beta subunit and is excluded from this model. Nitrogenase, also called dinitrogenase, is responsible for nitrogen fixation. Note: the trusted cutoff score has recently been lowered to include an additional family in which the beta subunit is shorter by about 50 amino acids at the N-terminus. In species with the shorter form of the beta subunit, the alpha subunit has a novel insert of similar length.
Probab=23.42 E-value=1.4e+02 Score=27.03 Aligned_cols=26 Identities=15% Similarity=0.322 Sum_probs=20.1
Q ss_pred CCeEEEEeCCCcchHHHHHHHhCCceEEe
Q 029508 117 PPVTCVVSDGIMGFGRKAAQMLGILDIQF 145 (192)
Q Consensus 117 ~~~d~vI~D~~~~~~~~vA~~lgIP~i~~ 145 (192)
.++|++|... +...+|+++|||.+-+
T Consensus 436 ~~~DlliG~s---~~k~~a~~~giPlir~ 461 (515)
T TIGR01286 436 EPVDFLIGNS---YGKYIQRDTLVPLIRI 461 (515)
T ss_pred cCCCEEEECc---hHHHHHHHcCCCEEEe
Confidence 3678888665 5688999999999744
No 366
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=23.40 E-value=1.7e+02 Score=23.26 Aligned_cols=42 Identities=14% Similarity=0.082 Sum_probs=33.7
Q ss_pred eEEEEcCCCccChHHHHHHHHHHHhC-CCeEEEEcCCchhhhh
Q 029508 10 HAVCVPYPAQGHVSPMMQVAKLLHSK-GFHITFVNTEFNHRRL 51 (192)
Q Consensus 10 ~Il~~p~p~~GH~~P~l~La~~La~r-Gh~VT~it~~~~~~~~ 51 (192)
-+++...||.|=-..+++++..++.+ |..|.+++.+.....+
T Consensus 32 ~~~i~g~~G~GKT~l~~~~~~~~~~~~g~~vl~iS~E~~~~~~ 74 (271)
T cd01122 32 LIILTAGTGVGKTTFLREYALDLITQHGVRVGTISLEEPVVRT 74 (271)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHHhcCceEEEEEcccCHHHH
Confidence 44566668889888999999999877 9999999987655444
No 367
>PRK13869 plasmid-partitioning protein RepA; Provisional
Probab=23.21 E-value=1.8e+02 Score=25.24 Aligned_cols=37 Identities=14% Similarity=0.352 Sum_probs=29.6
Q ss_pred eEE-EEcC-CCccChHHHHHHHHHHHhCCCeEEEEcCCc
Q 029508 10 HAV-CVPY-PAQGHVSPMMQVAKLLHSKGFHITFVNTEF 46 (192)
Q Consensus 10 ~Il-~~p~-p~~GH~~P~l~La~~La~rGh~VT~it~~~ 46 (192)
+|+ +.-. .|.|=-.....||..|+.+|++|-++=.+.
T Consensus 122 ~vIav~n~KGGvGKTTta~nLA~~LA~~G~rVLlIDlDp 160 (405)
T PRK13869 122 QVIAVTNFKGGSGKTTTSAHLAQYLALQGYRVLAVDLDP 160 (405)
T ss_pred eEEEEEcCCCCCCHHHHHHHHHHHHHhcCCceEEEcCCC
Confidence 444 4444 777888999999999999999999986554
No 368
>COG1440 CelA Phosphotransferase system cellobiose-specific component IIB [Carbohydrate transport and metabolism]
Probab=23.19 E-value=2.1e+02 Score=19.94 Aligned_cols=38 Identities=16% Similarity=0.069 Sum_probs=27.3
Q ss_pred CceEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEcCC
Q 029508 8 KAHAVCVPYPAQGHVSPMMQVAKLLHSKGFHITFVNTE 45 (192)
Q Consensus 8 ~~~Il~~p~p~~GH~~P~l~La~~La~rGh~VT~it~~ 45 (192)
+.+|++++..|.|--.-.-..-+...++|-++++-..+
T Consensus 1 Mk~IlLvC~aGmSTSlLV~Km~~aA~~kg~~~~I~A~s 38 (102)
T COG1440 1 MKKILLVCAAGMSTSLLVTKMKKAAESKGKDVTIEAYS 38 (102)
T ss_pred CceEEEEecCCCcHHHHHHHHHHHHHhCCCceEEEEec
Confidence 35899999988876555555666666788888876544
No 369
>PHA02519 plasmid partition protein SopA; Reviewed
Probab=23.13 E-value=1.8e+02 Score=25.17 Aligned_cols=36 Identities=11% Similarity=0.171 Sum_probs=28.9
Q ss_pred ceEE-EEcC-CCccChHHHHHHHHHHHhCCCeEEEEcC
Q 029508 9 AHAV-CVPY-PAQGHVSPMMQVAKLLHSKGFHITFVNT 44 (192)
Q Consensus 9 ~~Il-~~p~-p~~GH~~P~l~La~~La~rGh~VT~it~ 44 (192)
.+|+ +... .|.|=-.-...||..|+.+|++|-++=.
T Consensus 106 ~~vIav~n~KGGVGKTTta~nLA~~LA~~G~rVLlIDl 143 (387)
T PHA02519 106 PVVLAVMSHKGGVYKTSSAVHTAQWLALQGHRVLLIEG 143 (387)
T ss_pred ceEEEEecCCCCCcHHHHHHHHHHHHHhCCCcEEEEeC
Confidence 4454 4444 7778889999999999999999998863
No 370
>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....
Probab=23.13 E-value=93 Score=23.82 Aligned_cols=32 Identities=22% Similarity=0.281 Sum_probs=21.9
Q ss_pred eEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEcCCc
Q 029508 10 HAVCVPYPAQGHVSPMMQVAKLLHSKGFHITFVNTEF 46 (192)
Q Consensus 10 ~Il~~p~p~~GH~~P~l~La~~La~rGh~VT~it~~~ 46 (192)
+|.++ |.||+ -+.+|-.||++||+|+-+-...
T Consensus 2 ~I~Vi---GlGyv--Gl~~A~~lA~~G~~V~g~D~~~ 33 (185)
T PF03721_consen 2 KIAVI---GLGYV--GLPLAAALAEKGHQVIGVDIDE 33 (185)
T ss_dssp EEEEE-----STT--HHHHHHHHHHTTSEEEEE-S-H
T ss_pred EEEEE---CCCcc--hHHHHHHHHhCCCEEEEEeCCh
Confidence 44554 67776 4678889999999999987654
No 371
>KOG3062 consensus RNA polymerase II elongator associated protein [General function prediction only]
Probab=23.12 E-value=2e+02 Score=23.55 Aligned_cols=30 Identities=17% Similarity=0.341 Sum_probs=26.0
Q ss_pred ceEEEEcCCCccChHHHHHHHHHHHhCCCe
Q 029508 9 AHAVCVPYPAQGHVSPMMQVAKLLHSKGFH 38 (192)
Q Consensus 9 ~~Il~~p~p~~GH~~P~l~La~~La~rGh~ 38 (192)
+-|++...|..|--.-..+|.++|+++|++
T Consensus 2 pLVvi~G~P~SGKstrA~~L~~~l~~~~~K 31 (281)
T KOG3062|consen 2 PLVVICGLPCSGKSTRAVELREALKERGTK 31 (281)
T ss_pred CeEEEeCCCCCCchhHHHHHHHHHHhhccc
Confidence 346677779999999999999999999976
No 372
>PRK07102 short chain dehydrogenase; Provisional
Probab=23.10 E-value=86 Score=24.33 Aligned_cols=21 Identities=10% Similarity=0.165 Sum_probs=17.7
Q ss_pred HHHHHHHHHhCCCeEEEEcCC
Q 029508 25 MMQVAKLLHSKGFHITFVNTE 45 (192)
Q Consensus 25 ~l~La~~La~rGh~VT~it~~ 45 (192)
-..++++|+++|++|+++.-.
T Consensus 14 G~~~a~~l~~~G~~Vi~~~r~ 34 (243)
T PRK07102 14 ARACARRYAAAGARLYLAARD 34 (243)
T ss_pred HHHHHHHHHhcCCEEEEEeCC
Confidence 478999999999999888644
No 373
>TIGR01082 murC UDP-N-acetylmuramate--alanine ligase. UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase (murein tripeptide ligase) is described by TIGR01081.
Probab=23.07 E-value=91 Score=27.24 Aligned_cols=20 Identities=20% Similarity=0.501 Sum_probs=16.8
Q ss_pred HHHHHHHHHhCCCeEEEEcC
Q 029508 25 MMQVAKLLHSKGFHITFVNT 44 (192)
Q Consensus 25 ~l~La~~La~rGh~VT~it~ 44 (192)
|-.+|+.|+++|++|+..-.
T Consensus 12 m~~la~~L~~~G~~v~~~D~ 31 (448)
T TIGR01082 12 MSGIAEILLNRGYQVSGSDI 31 (448)
T ss_pred HHHHHHHHHHCCCeEEEECC
Confidence 55699999999999998653
No 374
>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=23.06 E-value=1.6e+02 Score=26.18 Aligned_cols=41 Identities=22% Similarity=0.336 Sum_probs=35.1
Q ss_pred eEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEcCCchhhhh
Q 029508 10 HAVCVPYPAQGHVSPMMQVAKLLHSKGFHITFVNTEFNHRRL 51 (192)
Q Consensus 10 ~Il~~p~p~~GH~~P~l~La~~La~rGh~VT~it~~~~~~~~ 51 (192)
-|++---||.|--.-+++++..|+++| +|-+++++...+++
T Consensus 95 ~iLIgGdPGIGKSTLLLQva~~lA~~~-~vLYVsGEES~~Qi 135 (456)
T COG1066 95 VILIGGDPGIGKSTLLLQVAARLAKRG-KVLYVSGEESLQQI 135 (456)
T ss_pred EEEEccCCCCCHHHHHHHHHHHHHhcC-cEEEEeCCcCHHHH
Confidence 445555699999999999999999999 99999999877655
No 375
>PLN02583 cinnamoyl-CoA reductase
Probab=23.05 E-value=85 Score=25.56 Aligned_cols=20 Identities=20% Similarity=0.253 Sum_probs=16.8
Q ss_pred HHHHHHHHHhCCCeEEEEcC
Q 029508 25 MMQVAKLLHSKGFHITFVNT 44 (192)
Q Consensus 25 ~l~La~~La~rGh~VT~it~ 44 (192)
-..++++|+++||+|+.+.-
T Consensus 19 G~~lv~~Ll~~G~~V~~~~R 38 (297)
T PLN02583 19 GFWLVKRLLSRGYTVHAAVQ 38 (297)
T ss_pred HHHHHHHHHhCCCEEEEEEc
Confidence 46789999999999998764
No 376
>PRK14478 nitrogenase molybdenum-cofactor biosynthesis protein NifE; Provisional
Probab=22.98 E-value=1e+02 Score=27.41 Aligned_cols=34 Identities=21% Similarity=0.123 Sum_probs=0.0
Q ss_pred HHHHHHHhhcCCCCCCCCeEEEEeCCCcchHHHHHHHhCCceE
Q 029508 101 FLELLGKLNSSADDQVPPVTCVVSDGIMGFGRKAAQMLGILDI 143 (192)
Q Consensus 101 ~~~ll~~l~~~~~~~~~~~d~vI~D~~~~~~~~vA~~lgIP~i 143 (192)
..++.+.+.+ .++|++|.. .+...+|+++|||++
T Consensus 382 ~~e~~~~i~~------~~pDliig~---s~~~~~a~k~giP~~ 415 (475)
T PRK14478 382 PRELYKMLKE------AKADIMLSG---GRSQFIALKAGMPWL 415 (475)
T ss_pred HHHHHHHHhh------cCCCEEEec---CchhhhhhhcCCCEE
No 377
>PTZ00254 40S ribosomal protein SA; Provisional
Probab=22.93 E-value=1.2e+02 Score=24.82 Aligned_cols=30 Identities=17% Similarity=0.115 Sum_probs=22.3
Q ss_pred eE-EEEeCCCc-chHHHHHHHhCCceEEecCC
Q 029508 119 VT-CVVSDGIM-GFGRKAAQMLGILDIQFWTA 148 (192)
Q Consensus 119 ~d-~vI~D~~~-~~~~~vA~~lgIP~i~~~t~ 148 (192)
|| +||.|... .-+..-|.++|||+|.+.-+
T Consensus 119 P~llIV~Dp~~d~qAI~EA~~lnIPvIal~DT 150 (249)
T PTZ00254 119 PRLLIVTDPRTDHQAIREASYVNIPVIALCDT 150 (249)
T ss_pred CCEEEEeCCCcchHHHHHHHHhCCCEEEEecC
Confidence 55 56668866 44668899999999998743
No 378
>COG2084 MmsB 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases [Lipid metabolism]
Probab=22.91 E-value=87 Score=26.07 Aligned_cols=24 Identities=21% Similarity=0.141 Sum_probs=19.2
Q ss_pred HHHHHHHHHhCCCeEEEEcCCchh
Q 029508 25 MMQVAKLLHSKGFHITFVNTEFNH 48 (192)
Q Consensus 25 ~l~La~~La~rGh~VT~it~~~~~ 48 (192)
-..+|++|.++||+|+++.-...+
T Consensus 12 G~pmA~~L~~aG~~v~v~~r~~~k 35 (286)
T COG2084 12 GSPMAANLLKAGHEVTVYNRTPEK 35 (286)
T ss_pred hHHHHHHHHHCCCEEEEEeCChhh
Confidence 356899999999999999865433
No 379
>PRK06851 hypothetical protein; Provisional
Probab=22.90 E-value=2e+02 Score=24.87 Aligned_cols=44 Identities=20% Similarity=0.366 Sum_probs=35.1
Q ss_pred CceEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEcCCchhhhh
Q 029508 8 KAHAVCVPYPAQGHVSPMMQVAKLLHSKGFHITFVNTEFNHRRL 51 (192)
Q Consensus 8 ~~~Il~~p~p~~GH~~P~l~La~~La~rGh~VT~it~~~~~~~~ 51 (192)
+..+++-..||.|=-.-+..+++++.+||.+|.++-.+...+++
T Consensus 214 ~~~~~i~G~pG~GKstl~~~i~~~a~~~G~~v~~~hC~~dPdsl 257 (367)
T PRK06851 214 KNRYFLKGRPGTGKSTMLKKIAKAAEERGFDVEVYHCGFDPDSL 257 (367)
T ss_pred ceEEEEeCCCCCcHHHHHHHHHHHHHhCCCeEEEEeCCCCCCCc
Confidence 34566777799998899999999999999999998766544443
No 380
>PF00148 Oxidored_nitro: Nitrogenase component 1 type Oxidoreductase; InterPro: IPR000510 Enzymes belonging to this family include cofactor-requiring nitrogenases and protochlorophyllide reductase. The key enzymatic reactions in nitrogen fixation are catalysed by the nitrogenase complex, which has two components, the iron protein (component 2), and a component (component 1) which is either a molybdenum-iron, vanadium-iron or iron-iron protein. The enzyme (1.18.6.1 from EC) forms a hexamer of two alpha, two beta and two delta chains. Protochlorophyllide reductase (1.3.1.33 from EC) is involved in the light-dependent accumulation of chlorophyll, probably at the step of reduction of protochlorophyllide to chlorophyllide.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1QH1_C 1QH8_A 1H1L_C 1QGU_A 3AEK_C 3AET_C 3AER_C 3AEU_A 3AES_C 3AEQ_C ....
Probab=22.88 E-value=1.6e+02 Score=25.08 Aligned_cols=40 Identities=13% Similarity=-0.021 Sum_probs=28.3
Q ss_pred CeEEEEeCCCcc-hHHHHHHHhCCceEE-ecCCchHHHHHHH
Q 029508 118 PVTCVVSDGIMG-FGRKAAQMLGILDIQ-FWTASACGMMGYL 157 (192)
Q Consensus 118 ~~d~vI~D~~~~-~~~~vA~~lgIP~i~-~~t~~a~~~~~~~ 157 (192)
...+++...... ++..+.+++|+|++. -.+.+.....-|+
T Consensus 194 ~lniv~~~~~~~~~a~~L~e~~giP~~~~~~p~G~~~t~~~l 235 (398)
T PF00148_consen 194 ALNIVLCPEGGPYAAEWLEERFGIPYLYFPSPYGIEGTDAWL 235 (398)
T ss_dssp SEEEESSCCHHHHHHHHHHHHHT-EEEEEC-SBSHHHHHHHH
T ss_pred cEEEEeccchhhHHHHHHHHHhCCCeeeccccccHHHHHHHH
Confidence 576777666555 788999999999998 6667766665554
No 381
>PRK05653 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated
Probab=22.83 E-value=89 Score=23.93 Aligned_cols=32 Identities=16% Similarity=0.197 Sum_probs=21.7
Q ss_pred eEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEcCC
Q 029508 10 HAVCVPYPAQGHVSPMMQVAKLLHSKGFHITFVNTE 45 (192)
Q Consensus 10 ~Il~~p~p~~GH~~P~l~La~~La~rGh~VT~it~~ 45 (192)
++++.. +.|.+ -..+++.|+++|++|+.+...
T Consensus 7 ~ilItG--asg~i--G~~l~~~l~~~g~~v~~~~r~ 38 (246)
T PRK05653 7 TALVTG--ASRGI--GRAIALRLAADGAKVVIYDSN 38 (246)
T ss_pred EEEEEC--CCcHH--HHHHHHHHHHCCCEEEEEeCC
Confidence 454443 23443 467899999999998777654
No 382
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=22.81 E-value=1.7e+02 Score=26.00 Aligned_cols=44 Identities=7% Similarity=0.012 Sum_probs=37.9
Q ss_pred ceEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEcCCchhhhhh
Q 029508 9 AHAVCVPYPAQGHVSPMMQVAKLLHSKGFHITFVNTEFNHRRLI 52 (192)
Q Consensus 9 ~~Il~~p~p~~GH~~P~l~La~~La~rGh~VT~it~~~~~~~~~ 52 (192)
.-+++...||.|=-.-.++++.+.+++|.++.+++.+...+.+.
T Consensus 264 s~~li~G~~G~GKt~l~~~f~~~~~~~ge~~~y~s~eEs~~~i~ 307 (484)
T TIGR02655 264 SIILATGATGTGKTLLVSKFLENACANKERAILFAYEESRAQLL 307 (484)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEeeCCHHHHH
Confidence 45677788999999999999999999999999999987766554
No 383
>PF05991 NYN_YacP: YacP-like NYN domain; InterPro: IPR010298 This family consists of several hypothetical bacterial proteins as well as some uncharacterised sequences from Arabidopsis thaliana. The function of this family is unknown.
Probab=22.80 E-value=1.1e+02 Score=23.12 Aligned_cols=32 Identities=16% Similarity=0.256 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHhCCCeEEEEcCCchhhhhhhc
Q 029508 23 SPMMQVAKLLHSKGFHITFVNTEFNHRRLIRS 54 (192)
Q Consensus 23 ~P~l~La~~La~rGh~VT~it~~~~~~~~~~~ 54 (192)
.-...+++.+..+|.+||++|++...+.....
T Consensus 81 ~~Ie~~v~~~~~~~~~v~VVTSD~~iq~~~~~ 112 (166)
T PF05991_consen 81 DYIERLVRELKNRPRQVTVVTSDREIQRAARG 112 (166)
T ss_pred HHHHHHHHHhccCCCeEEEEeCCHHHHHHHhh
Confidence 34667777777778899999998766655433
No 384
>PF06564 YhjQ: YhjQ protein; InterPro: IPR017746 The YhjQ protein is encoded immediately upstream of bacterial cellulose synthase (bcs) genes in a broad range of bacteria, including both copies of the bcs locus in Klebsiella pneumoniae, and in several species is clearly part of the bcs operon. It is identified as a probable component of the bacterial cellulose metabolic process not only by gene location, but also by partial phylogenetic profiling, or Haft-Selengut algorithm [], based on a bacterial cellulose biosynthesis genome property profile. Cellulose plays an important role in biofilm formation and structural integrity in some bacteria. Mutants in yhjQ in Escherichia coli, show altered morphology an growth, but the function of YhjQ has not yet been determined.
Probab=22.63 E-value=2e+02 Score=23.34 Aligned_cols=37 Identities=14% Similarity=0.082 Sum_probs=29.1
Q ss_pred ceEEEEcC-CCccChHHHHHHHHHHHhCCCeEEEEcCC
Q 029508 9 AHAVCVPY-PAQGHVSPMMQVAKLLHSKGFHITFVNTE 45 (192)
Q Consensus 9 ~~Il~~p~-p~~GH~~P~l~La~~La~rGh~VT~it~~ 45 (192)
..|++... .|.|=-.-.-.||..|+++|.+|..|=-.
T Consensus 2 ~~iai~s~kGGvG~TTltAnLA~aL~~~G~~VlaID~d 39 (243)
T PF06564_consen 2 KVIAIVSPKGGVGKTTLTANLAWALARLGESVLAIDLD 39 (243)
T ss_pred cEEEEecCCCCCCHHHHHHHHHHHHHHCCCcEEEEeCC
Confidence 34555544 66688888999999999999999988654
No 385
>PLN02828 formyltetrahydrofolate deformylase
Probab=22.57 E-value=2.7e+02 Score=22.94 Aligned_cols=47 Identities=19% Similarity=0.135 Sum_probs=31.6
Q ss_pred HHHHHHHHHhhcCCCCCCCCeEEEEeCCC---cchHHHHHHHhCCceEEecC
Q 029508 99 APFLELLGKLNSSADDQVPPVTCVVSDGI---MGFGRKAAQMLGILDIQFWT 147 (192)
Q Consensus 99 ~~~~~ll~~l~~~~~~~~~~~d~vI~D~~---~~~~~~vA~~lgIP~i~~~t 147 (192)
..+++++...++..- ...+.+||++-- .......|+++|||+..+..
T Consensus 82 ~nl~~ll~~~~~g~l--~~eI~~ViSn~~~~~~a~~~~~A~~~gIP~~~~~~ 131 (268)
T PLN02828 82 HCLIDLLHRWQDGRL--PVDITCVISNHERGPNTHVMRFLERHGIPYHYLPT 131 (268)
T ss_pred hhHHHHHHhhhcCCC--CceEEEEEeCCCCCCCchHHHHHHHcCCCEEEeCC
Confidence 457888887653100 135778898862 22467899999999987654
No 386
>cd01974 Nitrogenase_MoFe_beta Nitrogenase_MoFe_beta: Nitrogenase MoFe protein, beta subunit. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen to ammonia. The Molybdenum (Mo-) nitrogenase is the most widespread and best characterized of these systems. Mo-nitrogenase consists of the MoFe protein (component 1) and the Fe protein (component 2). MoFe is an alpha2beta2 tetramer. This group contains the beta subunit of the MoFe protein. Each alphabeta pair of MoFe contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha subunit. The Fe protein contains a single [4Fe-4S] cluster. Electrons are transferred from the [4Fe-4S] cluster of the Fe protein to the P-cluster of the MoFe and in turn to FeMoCo, the site of substrate reduction.
Probab=22.53 E-value=1.5e+02 Score=25.86 Aligned_cols=37 Identities=22% Similarity=0.327 Sum_probs=0.0
Q ss_pred HHHHHHHhhcCCCCCCCCeEEEEeCCCcchHHHHHHHhCCceEEec
Q 029508 101 FLELLGKLNSSADDQVPPVTCVVSDGIMGFGRKAAQMLGILDIQFW 146 (192)
Q Consensus 101 ~~~ll~~l~~~~~~~~~~~d~vI~D~~~~~~~~vA~~lgIP~i~~~ 146 (192)
..++.+.+.+ .++|++|... +...+|+++|||++.+.
T Consensus 366 ~~e~~~~i~~------~~pDliiG~s---~~~~~a~~~gip~v~~~ 402 (435)
T cd01974 366 LWHLRSLLFT------EPVDLLIGNT---YGKYIARDTDIPLVRFG 402 (435)
T ss_pred HHHHHHHHhh------cCCCEEEECc---cHHHHHHHhCCCEEEee
No 387
>TIGR01285 nifN nitrogenase molybdenum-iron cofactor biosynthesis protein NifN. This protein forms a complex with NifE, and appears as a NifEN in some species. NifEN is a required for producing the molybdenum-iron cofactor of molybdenum-requiring nitrogenases. NifN is closely related to the nitrogenase molybdenum-iron protein beta chain NifK. This model describes most examples of NifN but excludes some cases, such as the putative NifN of Chlorobium tepidum, for which a separate model may be created.
Probab=22.52 E-value=1.9e+02 Score=25.43 Aligned_cols=40 Identities=15% Similarity=0.110 Sum_probs=28.5
Q ss_pred CeEEEEeCCCcchHHHHHHHhCCceEEe-cCCchHHHHHHH
Q 029508 118 PVTCVVSDGIMGFGRKAAQMLGILDIQF-WTASACGMMGYL 157 (192)
Q Consensus 118 ~~d~vI~D~~~~~~~~vA~~lgIP~i~~-~t~~a~~~~~~~ 157 (192)
...+++.+.....+..+.+++|||++.+ .+.+.....-++
T Consensus 236 ~lniv~~~~~~~~a~~Lee~~giP~~~~~~p~G~~~t~~~l 276 (432)
T TIGR01285 236 CCTLAIGESMRRAASLLADRCGVPYIVFPSLMGLEAVDAFL 276 (432)
T ss_pred cEEEEEChhHHHHHHHHHHHHCCCeEecCCCcChHHHHHHH
Confidence 5777776654444567889999999987 567776665554
No 388
>PRK06505 enoyl-(acyl carrier protein) reductase; Provisional
Probab=22.49 E-value=2e+02 Score=23.06 Aligned_cols=35 Identities=20% Similarity=0.208 Sum_probs=25.5
Q ss_pred CceEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEc
Q 029508 8 KAHAVCVPYPAQGHVSPMMQVAKLLHSKGFHITFVN 43 (192)
Q Consensus 8 ~~~Il~~p~p~~GH~~P~l~La~~La~rGh~VT~it 43 (192)
+.++++++..+.++= --..+|++|+++|++|.+..
T Consensus 6 ~~k~~lVTGas~~~G-IG~aiA~~la~~Ga~V~~~~ 40 (271)
T PRK06505 6 QGKRGLIMGVANDHS-IAWGIAKQLAAQGAELAFTY 40 (271)
T ss_pred CCCEEEEeCCCCCCc-HHHHHHHHHHhCCCEEEEec
Confidence 347788887654221 36789999999999998864
No 389
>cd01916 ACS_1 Acetyl-CoA synthase (ACS), also known as acetyl-CoA decarbonylase, is found in acetogenic and methanogenic organisms and is responsible for the synthesis and breakdown of acetyl-CoA. ACS forms a heterotetramer with carbon monoxide dehydrogenase (CODH) consisting of two ACS and two CODH subunits. CODH reduces carbon dioxide to carbon monoxide and ACS then synthesizes acetyl-CoA from carbon monoxide, CoA, and a methyl group donated by another protein (CoFeSP). ACS has three structural domains, an N-terminal rossman fold domain with a helical region at its N-terminus which interacts with CODH, and two alpha + beta fold domains. A Ni-Fe-S center referred to as the A-cluster is located in the C-terminal domain. A large cavity exists between the three domains which may bind CoA.
Probab=22.49 E-value=93 Score=29.47 Aligned_cols=34 Identities=26% Similarity=0.017 Sum_probs=28.0
Q ss_pred CCeEEEEeCCCc--chHHHHHHHhCCceEEecCCch
Q 029508 117 PPVTCVVSDGIM--GFGRKAAQMLGILDIQFWTASA 150 (192)
Q Consensus 117 ~~~d~vI~D~~~--~~~~~vA~~lgIP~i~~~t~~a 150 (192)
.-+|++|.|.-+ +....+|+++|.+.|.+.+-..
T Consensus 264 G~~D~~vvD~qCi~~~I~eiA~kyG~g~I~tt~r~~ 299 (731)
T cd01916 264 GIADVVVVDEQCIRADILEEAQKLGIPVIATNDKIM 299 (731)
T ss_pred CCCcEEEEecccCcccHHHHHHHhCCCEEEechhhh
Confidence 469999999866 4467999999999999887543
No 390
>PF13407 Peripla_BP_4: Periplasmic binding protein domain; PDB: 3BRS_B 3GBP_A 3GA5_A 1GCG_A 1GCA_A 3H75_A 3D02_A 3L49_B 3EJW_B 3T95_A ....
Probab=22.48 E-value=2.2e+02 Score=21.99 Aligned_cols=32 Identities=13% Similarity=-0.014 Sum_probs=23.2
Q ss_pred CCeEEEEeCCCcc----hHHHHHHHhCCceEEecCC
Q 029508 117 PPVTCVVSDGIMG----FGRKAAQMLGILDIQFWTA 148 (192)
Q Consensus 117 ~~~d~vI~D~~~~----~~~~vA~~lgIP~i~~~t~ 148 (192)
.++|.||...... -...-+.+-|||++.+...
T Consensus 54 ~~~d~Iiv~~~~~~~~~~~l~~~~~~gIpvv~~d~~ 89 (257)
T PF13407_consen 54 QGVDGIIVSPVDPDSLAPFLEKAKAAGIPVVTVDSD 89 (257)
T ss_dssp TTESEEEEESSSTTTTHHHHHHHHHTTSEEEEESST
T ss_pred hcCCEEEecCCCHHHHHHHHHHHhhcCceEEEEecc
Confidence 3799999876543 2345566779999998777
No 391
>TIGR03029 EpsG chain length determinant protein tyrosine kinase EpsG. The proteins in this family are homologs of the EpsG protein found in Methylobacillus strain 12S and are generally found in operons with other Eps homologs. The protein is believed to function as the protein tyrosine kinase component of the chain length regulator (along with the transmembrane component EpsF).
Probab=22.47 E-value=4.1e+02 Score=21.23 Aligned_cols=38 Identities=13% Similarity=0.169 Sum_probs=29.0
Q ss_pred CceEEEEcC--CCccChHHHHHHHHHHHhCCCeEEEEcCC
Q 029508 8 KAHAVCVPY--PAQGHVSPMMQVAKLLHSKGFHITFVNTE 45 (192)
Q Consensus 8 ~~~Il~~p~--p~~GH~~P~l~La~~La~rGh~VT~it~~ 45 (192)
..+++.+.. +|.|=-.-...||..|++.|.+|-++=.+
T Consensus 102 ~~~vi~vts~~~g~Gktt~a~nLA~~la~~g~~VllID~D 141 (274)
T TIGR03029 102 GRKALAVVSAKSGEGCSYIAANLAIVFSQLGEKTLLIDAN 141 (274)
T ss_pred CCeEEEEECCCCCCCHHHHHHHHHHHHHhcCCeEEEEeCC
Confidence 445555554 55677777899999999999999998654
No 392
>KOG2585 consensus Uncharacterized conserved protein [Function unknown]
Probab=22.42 E-value=1.8e+02 Score=25.76 Aligned_cols=35 Identities=11% Similarity=0.158 Sum_probs=26.9
Q ss_pred CceEEEEcCCCc--cChHHHHHHHHHHHhCCCeEEEEcCC
Q 029508 8 KAHAVCVPYPAQ--GHVSPMMQVAKLLHSKGFHITFVNTE 45 (192)
Q Consensus 8 ~~~Il~~p~p~~--GH~~P~l~La~~La~rGh~VT~it~~ 45 (192)
.++|++++.|+- |-- +-.+|+|++.||.++++.+.
T Consensus 266 ~P~V~Ilcgpgnnggdg---~v~gRHL~~~G~~~vi~~pk 302 (453)
T KOG2585|consen 266 WPLVAILCGPGNNGGDG---LVCGRHLAQHGYTPVIYYPK 302 (453)
T ss_pred CceEEEEeCCCCccchh---HHHHHHHHHcCceeEEEeec
Confidence 456999998775 332 23899999999999988764
No 393
>PF09334 tRNA-synt_1g: tRNA synthetases class I (M); InterPro: IPR015413 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This domain is found in methionyl and leucyl tRNA synthetases. ; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 2D5B_A 1A8H_A 1WOY_A 2D54_A 4DLP_A 2CT8_B 2CSX_A 1MED_A 1PFU_A 1PFW_A ....
Probab=22.42 E-value=63 Score=27.98 Aligned_cols=27 Identities=30% Similarity=0.583 Sum_probs=21.2
Q ss_pred cChHHHH---HHHHHHHhCCCeEEEEcCCc
Q 029508 20 GHVSPMM---QVAKLLHSKGFHITFVNTEF 46 (192)
Q Consensus 20 GH~~P~l---~La~~La~rGh~VT~it~~~ 46 (192)
||+.|++ -++|.+..+|++|-++++.+
T Consensus 17 GH~~~~l~ADv~aR~~r~~G~~v~~~tGtD 46 (391)
T PF09334_consen 17 GHLYPYLAADVLARYLRLRGHDVLFVTGTD 46 (391)
T ss_dssp HHHHHHHHHHHHHHHHHHTT-EEEEEEEEE
T ss_pred ChhHHHHHHHHHHHHHhhcccceeeEEecc
Confidence 8988765 46888888999999998754
No 394
>PF01738 DLH: Dienelactone hydrolase family; InterPro: IPR002925 Dienelactone hydrolases play a crucial role in chlorocatechol degradation via the modified ortho cleavage pathway. Enzymes induced in 4-fluorobenzoate-utilizing bacteria have been classified into three groups on the basis of their specificity towards cis- and trans-dienelactone []. Some proteins contain repeated small fragments of this domain (for example rat kan-1 protein).; GO: 0016787 hydrolase activity; PDB: 1GGV_A 1ZIY_A 1ZI6_A 1ZIC_A 1ZJ5_A 1ZI8_A 1ZJ4_A 1ZI9_A 1ZIX_A 3F67_A.
Probab=22.41 E-value=2.2e+02 Score=21.73 Aligned_cols=34 Identities=15% Similarity=0.216 Sum_probs=22.8
Q ss_pred CceEEEEcCCCccChHHHHHHHHHHHhCCCeEEEE
Q 029508 8 KAHAVCVPYPAQGHVSPMMQVAKLLHSKGFHITFV 42 (192)
Q Consensus 8 ~~~Il~~p~p~~GH~~P~l~La~~La~rGh~VT~i 42 (192)
..-|++++ -..|--.-+..+|++|+++|+.|.+.
T Consensus 14 ~~~Vvv~~-d~~G~~~~~~~~ad~lA~~Gy~v~~p 47 (218)
T PF01738_consen 14 RPAVVVIH-DIFGLNPNIRDLADRLAEEGYVVLAP 47 (218)
T ss_dssp EEEEEEE--BTTBS-HHHHHHHHHHHHTT-EEEEE
T ss_pred CCEEEEEc-CCCCCchHHHHHHHHHHhcCCCEEec
Confidence 34455554 55687677889999999999766654
No 395
>PRK13932 stationary phase survival protein SurE; Provisional
Probab=22.41 E-value=2e+02 Score=23.50 Aligned_cols=41 Identities=20% Similarity=0.285 Sum_probs=28.2
Q ss_pred CCCceEEEEcCCCccChHH-HHHHHHHHHhCCCeEEEEcCCchhh
Q 029508 6 ARKAHAVCVPYPAQGHVSP-MMQVAKLLHSKGFHITFVNTEFNHR 49 (192)
Q Consensus 6 ~~~~~Il~~p~p~~GH~~P-~l~La~~La~rGh~VT~it~~~~~~ 49 (192)
+++.||++.- --|--.| +..|++.|.+.| +|+++.+.....
T Consensus 3 ~~~M~ILltN--DDGi~a~Gi~aL~~~l~~~g-~V~VvAP~~~~S 44 (257)
T PRK13932 3 DKKPHILVCN--DDGIEGEGIHVLAASMKKIG-RVTVVAPAEPHS 44 (257)
T ss_pred CCCCEEEEEC--CCCCCCHHHHHHHHHHHhCC-CEEEEcCCCCCC
Confidence 3456888765 3343334 678888888888 799888876554
No 396
>COG3349 Uncharacterized conserved protein [Function unknown]
Probab=22.37 E-value=76 Score=28.50 Aligned_cols=22 Identities=18% Similarity=0.317 Sum_probs=18.0
Q ss_pred HHHHHHHHHHhCCCeEEEEcCC
Q 029508 24 PMMQVAKLLHSKGFHITFVNTE 45 (192)
Q Consensus 24 P~l~La~~La~rGh~VT~it~~ 45 (192)
--|.=|+.|+++||+||++=.-
T Consensus 11 AgL~~a~~La~~g~~vt~~ea~ 32 (485)
T COG3349 11 AGLAAAYELADAGYDVTLYEAR 32 (485)
T ss_pred HHHHHHHHHHhCCCceEEEecc
Confidence 4467789999999999998554
No 397
>PRK07454 short chain dehydrogenase; Provisional
Probab=22.31 E-value=93 Score=24.07 Aligned_cols=22 Identities=14% Similarity=0.175 Sum_probs=18.3
Q ss_pred HHHHHHHHHHhCCCeEEEEcCC
Q 029508 24 PMMQVAKLLHSKGFHITFVNTE 45 (192)
Q Consensus 24 P~l~La~~La~rGh~VT~it~~ 45 (192)
--..++++|+++|++|+++.-.
T Consensus 18 iG~~la~~l~~~G~~V~~~~r~ 39 (241)
T PRK07454 18 IGKATALAFAKAGWDLALVARS 39 (241)
T ss_pred HHHHHHHHHHHCCCEEEEEeCC
Confidence 4678999999999999987643
No 398
>TIGR02137 HSK-PSP phosphoserine phosphatase/homoserine phosphotransferase bifunctional protein. This enzyme is a member of the haloacid dehalogenase (HAD) superfamily, specifically part of subfamily IB by virtue of the presence of an alpha helical domain in between motifs I and II of the HAD domain . The closest homologs to this family are monofunctional phosphoserine phosphatases (TIGR00338).
Probab=22.28 E-value=1.2e+02 Score=23.52 Aligned_cols=42 Identities=19% Similarity=0.245 Sum_probs=32.6
Q ss_pred CcHHHHHHHHHhhcCCCCCCCCeEEEEeCCCcchHHHHHHHhCCceEE
Q 029508 97 GLAPFLELLGKLNSSADDQVPPVTCVVSDGIMGFGRKAAQMLGILDIQ 144 (192)
Q Consensus 97 ~~~~~~~ll~~l~~~~~~~~~~~d~vI~D~~~~~~~~vA~~lgIP~i~ 144 (192)
..+.+.++++.+++ ...-+||+..+..++..+++++|+..+.
T Consensus 69 l~pga~ell~~lk~------~~~~~IVS~~~~~~~~~il~~lgi~~~~ 110 (203)
T TIGR02137 69 PLEGAVEFVDWLRE------RFQVVILSDTFYEFSQPLMRQLGFPTLL 110 (203)
T ss_pred CCccHHHHHHHHHh------CCeEEEEeCChHHHHHHHHHHcCCchhh
Confidence 46778889988865 2355888888888888999999998543
No 399
>PRK10818 cell division inhibitor MinD; Provisional
Probab=22.24 E-value=1.8e+02 Score=23.25 Aligned_cols=30 Identities=17% Similarity=0.248 Sum_probs=26.2
Q ss_pred CCccChHHHHHHHHHHHhCCCeEEEEcCCc
Q 029508 17 PAQGHVSPMMQVAKLLHSKGFHITFVNTEF 46 (192)
Q Consensus 17 p~~GH~~P~l~La~~La~rGh~VT~it~~~ 46 (192)
.|.|=-.-...||..|+++|.+|.++-.+.
T Consensus 12 GGvGKTt~a~nlA~~la~~g~~vllvD~D~ 41 (270)
T PRK10818 12 GGVGKTTSSAAIATGLAQKGKKTVVIDFDI 41 (270)
T ss_pred CCCcHHHHHHHHHHHHHHCCCeEEEEECCC
Confidence 677888899999999999999999987664
No 400
>PRK15062 hydrogenase isoenzymes formation protein HypD; Provisional
Probab=22.20 E-value=5.2e+02 Score=22.38 Aligned_cols=64 Identities=17% Similarity=0.059 Sum_probs=41.3
Q ss_pred CcHHHHHHHHHhhcCCCCCCCCeEEEEeCCCc----ch-H-HHHHHHhCCceEEecCCchHHHHHHHhHHHHHHCCC
Q 029508 97 GLAPFLELLGKLNSSADDQVPPVTCVVSDGIM----GF-G-RKAAQMLGILDIQFWTASACGMMGYLQHVELLKRGI 167 (192)
Q Consensus 97 ~~~~~~~ll~~l~~~~~~~~~~~d~vI~D~~~----~~-~-~~vA~~lgIP~i~~~t~~a~~~~~~~~lp~l~~~~~ 167 (192)
+.+.++.++++- ..++|.+|.-... ++ . ..+++++|+|.++.---+.-.+...+.+-+-..+|.
T Consensus 171 ~PPa~~~ll~~~-------~~~idgfi~PGHVstI~G~~~y~~l~~~y~~P~VVaGFEp~DiL~ai~~lv~q~~~g~ 240 (364)
T PRK15062 171 VPPAMRALLEDP-------ELRIDGFIAPGHVSTIIGTEPYEFLAEEYGIPVVVAGFEPLDILQSILMLVRQLEEGR 240 (364)
T ss_pred cHHHHHHHHcCC-------CCCccEEEecCEeEEEeccchhHHHHHHcCCCeEEeccCHHHHHHHHHHHHHHHHCCC
Confidence 456667776541 1478888876533 22 2 479999999999877666666666666555444554
No 401
>PRK07666 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=22.17 E-value=95 Score=23.97 Aligned_cols=22 Identities=18% Similarity=0.185 Sum_probs=18.0
Q ss_pred HHHHHHHHHHhCCCeEEEEcCC
Q 029508 24 PMMQVAKLLHSKGFHITFVNTE 45 (192)
Q Consensus 24 P~l~La~~La~rGh~VT~it~~ 45 (192)
--..++++|+++|++|.++.-.
T Consensus 19 iG~~l~~~L~~~G~~Vi~~~r~ 40 (239)
T PRK07666 19 IGRAVAIALAKEGVNVGLLART 40 (239)
T ss_pred HHHHHHHHHHHCCCEEEEEeCC
Confidence 4577899999999999887654
No 402
>PF13561 adh_short_C2: Enoyl-(Acyl carrier protein) reductase; PDB: 2UV8_B 3HMJ_A 2VKZ_C 1O5I_A 2P91_C 2OP0_A 2OL4_B 1NHW_A 1NNU_B 2O2Y_B ....
Probab=22.01 E-value=81 Score=24.57 Aligned_cols=22 Identities=14% Similarity=0.299 Sum_probs=18.8
Q ss_pred HHHHHHHHhCCCeEEEEcCCch
Q 029508 26 MQVAKLLHSKGFHITFVNTEFN 47 (192)
Q Consensus 26 l~La~~La~rGh~VT~it~~~~ 47 (192)
..+|++|+++|++|++......
T Consensus 10 ~aia~~l~~~Ga~V~~~~~~~~ 31 (241)
T PF13561_consen 10 RAIARALAEEGANVILTDRNEE 31 (241)
T ss_dssp HHHHHHHHHTTEEEEEEESSHH
T ss_pred HHHHHHHHHCCCEEEEEeCChH
Confidence 5789999999999999877654
No 403
>PF01497 Peripla_BP_2: Periplasmic binding protein; InterPro: IPR002491 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). Most bacterial importers employ a periplasmic substrate-binding protein (PBP) that delivers the ligand to the extracellular gate of the TM domains. These proteins bind their substrates selectively and with high affinity, which is thought to ensure the specificity of the transport reaction. Binding proteins in Gram-negative bacteria are present within the periplasm, whereas those in Gram-positive bacteria are tethered to the cell membrane via the acylation of a cysteine residue that is an integral component of a lipoprotein signal sequence. In planta expression of a high-affinity iron-uptake system involving the siderophore chrysobactin in Erwinia chrysanthemi 3937 contributes greatly to invasive growth of this pathogen on its natural host, African violets []. The cobalamin (vitamin B12) and the iron transport systems share many common attributes and probably evolved from the same origin [, ]. The periplasmic-binding domain is composed of two subdomains, each consisting of a central beta-sheet and surrounding alpha-helices, linked by a rigid alpha-helix. The substrate binding site is located in a cleft between the two alpha/beta subdomains [].; GO: 0005488 binding; PDB: 2X4L_A 1N4A_B 1N2Z_B 1N4D_B 4DBL_J 2QI9_F 3EIW_A 3EIX_A 3MWG_A 3MWF_A ....
Probab=21.94 E-value=2.5e+02 Score=21.46 Aligned_cols=33 Identities=12% Similarity=0.067 Sum_probs=23.6
Q ss_pred CeEEEEeCCCc--chHHHHHHHhCCceEEecCCch
Q 029508 118 PVTCVVSDGIM--GFGRKAAQMLGILDIQFWTASA 150 (192)
Q Consensus 118 ~~d~vI~D~~~--~~~~~vA~~lgIP~i~~~t~~a 150 (192)
+||+||..... .....-..+.+||++.+.....
T Consensus 60 ~PDlIi~~~~~~~~~~~~~~~~~~ip~~~~~~~~~ 94 (238)
T PF01497_consen 60 KPDLIIGSSFYGQSEEIEKLLEAGIPVVVFDSSSP 94 (238)
T ss_dssp --SEEEEETTSSCHHHHHHHHHTTSEEEEESSTTC
T ss_pred CCCEEEEeccccchHHHHHHhcccceEEEeecccc
Confidence 69999987766 3345555678999999988763
No 404
>PRK07067 sorbitol dehydrogenase; Provisional
Probab=21.89 E-value=94 Score=24.35 Aligned_cols=33 Identities=12% Similarity=0.132 Sum_probs=22.6
Q ss_pred eEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEcCC
Q 029508 10 HAVCVPYPAQGHVSPMMQVAKLLHSKGFHITFVNTE 45 (192)
Q Consensus 10 ~Il~~p~p~~GH~~P~l~La~~La~rGh~VT~it~~ 45 (192)
+.+++.. +.|.+ -.++++.|+++|++|..+...
T Consensus 7 ~~vlItG-as~~i--G~~ia~~l~~~G~~v~~~~r~ 39 (257)
T PRK07067 7 KVALLTG-AASGI--GEAVAERYLAEGARVVIADIK 39 (257)
T ss_pred CEEEEeC-CCchH--HHHHHHHHHHcCCEEEEEcCC
Confidence 3444543 33433 478999999999999887544
No 405
>cd06219 DHOD_e_trans_like1 FAD/NAD binding domain in the electron transfer subunit of dihydroorotate dehydrogenase-like proteins. Dihydroorotate dehydrogenases (DHODs) catalyze the only redox reaction in pyrimidine de novo biosynthesis. They catalyze the oxidation of (S)-dihydroorotate to orotate coupled with the reduction of NAD+. In L. lactis, DHOD B (encoded by pyrDa) is co-expressed with pyrK and both gene products are required for full activity, as well as NAD binding. NAD(P) binding domain of ferredoxin reductase-like proteins catalyze electron transfer between an NAD(P)-binding domain of the alpha/beta class and a discrete (usually N-terminal) domain which vary in orientation with respect to the NAD(P) binding domain. The N-terminal domain may contain a flavin prosthetic group, as in flavoenzymes, or use flavin as a substrate. Ferredoxin is reduced in the final stage of photosystem I. The flavoprotein Ferredoxin-NADP+ reductase transfers electrons from reduced ferredoxin to FAD,
Probab=21.85 E-value=1.2e+02 Score=24.01 Aligned_cols=38 Identities=21% Similarity=0.317 Sum_probs=27.7
Q ss_pred ceEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEcCCchh
Q 029508 9 AHAVCVPYPAQGHVSPMMQVAKLLHSKGFHITFVNTEFNH 48 (192)
Q Consensus 9 ~~Il~~p~p~~GH~~P~l~La~~La~rGh~VT~it~~~~~ 48 (192)
.+++++. .|.| +.|++.+++.+++++.+|+++-...+.
T Consensus 98 ~~~llia-gG~G-iaP~~~~l~~~~~~~~~v~l~~~~r~~ 135 (248)
T cd06219 98 GTVVFVG-GGVG-IAPIYPIAKALKEAGNRVITIIGARTK 135 (248)
T ss_pred CeEEEEe-Cccc-HHHHHHHHHHHHHcCCeEEEEEEcCCH
Confidence 3566665 2333 789999999999888899988665433
No 406
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=21.85 E-value=1.8e+02 Score=25.67 Aligned_cols=40 Identities=15% Similarity=0.234 Sum_probs=33.5
Q ss_pred eEEEEcCCCccChHHHHHHHHHHH-hCCCeEEEEcCCchhh
Q 029508 10 HAVCVPYPAQGHVSPMMQVAKLLH-SKGFHITFVNTEFNHR 49 (192)
Q Consensus 10 ~Il~~p~p~~GH~~P~l~La~~La-~rGh~VT~it~~~~~~ 49 (192)
-++++..+|.|=-.-...||..|. ++|.+|.++..+.++.
T Consensus 101 vi~~vG~~GsGKTTtaakLA~~l~~~~g~kV~lV~~D~~R~ 141 (428)
T TIGR00959 101 VILMVGLQGSGKTTTCGKLAYYLKKKQGKKVLLVACDLYRP 141 (428)
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHHhCCCeEEEEeccccch
Confidence 455777788899999999999997 5899999999886554
No 407
>PRK06179 short chain dehydrogenase; Provisional
Probab=21.84 E-value=94 Score=24.55 Aligned_cols=32 Identities=16% Similarity=0.119 Sum_probs=22.4
Q ss_pred EEEEcCCCccChHHHHHHHHHHHhCCCeEEEEcCC
Q 029508 11 AVCVPYPAQGHVSPMMQVAKLLHSKGFHITFVNTE 45 (192)
Q Consensus 11 Il~~p~p~~GH~~P~l~La~~La~rGh~VT~it~~ 45 (192)
.++++. +.|-+ -.+++++|+++|++|+.+.-.
T Consensus 6 ~vlVtG-asg~i--G~~~a~~l~~~g~~V~~~~r~ 37 (270)
T PRK06179 6 VALVTG-ASSGI--GRATAEKLARAGYRVFGTSRN 37 (270)
T ss_pred EEEEec-CCCHH--HHHHHHHHHHCCCEEEEEeCC
Confidence 344543 33443 578999999999999887643
No 408
>PRK07890 short chain dehydrogenase; Provisional
Probab=21.77 E-value=95 Score=24.20 Aligned_cols=21 Identities=10% Similarity=-0.004 Sum_probs=17.2
Q ss_pred HHHHHHHHHHhCCCeEEEEcC
Q 029508 24 PMMQVAKLLHSKGFHITFVNT 44 (192)
Q Consensus 24 P~l~La~~La~rGh~VT~it~ 44 (192)
--..+++.|+++|++|.++.-
T Consensus 17 IG~~la~~l~~~G~~V~~~~r 37 (258)
T PRK07890 17 LGRTLAVRAARAGADVVLAAR 37 (258)
T ss_pred HHHHHHHHHHHcCCEEEEEeC
Confidence 356789999999999987754
No 409
>TIGR03772 anch_rpt_subst anchored repeat ABC transporter, substrate-binding protein. Members of this protein family are ABC transporter permease subunits as identified by pfam00950, but additionally contain the Actinobacterial insert domain described by TIGR03769. Some homologs (lacking the insert) have been described as transporters of manganese or of chelated iron. Members of this family typically are found along with an ATP-binding cassette protein, a permease, and an LPXTG-anchored protein with two or three copies of the TIGR03769 insert that occurs just once in this protein family.
Probab=21.76 E-value=1.9e+02 Score=25.93 Aligned_cols=41 Identities=15% Similarity=0.105 Sum_probs=30.2
Q ss_pred HHHHHHHHhhcCCCCCCCCeEEEEeCCCcc----hHHHHHHHhCCceEEec
Q 029508 100 PFLELLGKLNSSADDQVPPVTCVVSDGIMG----FGRKAAQMLGILDIQFW 146 (192)
Q Consensus 100 ~~~~ll~~l~~~~~~~~~~~d~vI~D~~~~----~~~~vA~~lgIP~i~~~ 146 (192)
.++++++.+++ .++.||+++..+. .+..+|++.|+|.+.+.
T Consensus 408 ~L~~Li~~IK~------~~V~~IF~Epq~~~~~~~l~~IA~e~Gv~V~~l~ 452 (479)
T TIGR03772 408 DRRRLTRTIEN------LKVPAVFLEPNLAARSTTLNEIADELGVRVCAIY 452 (479)
T ss_pred HHHHHHHHHHH------cCCCEEEEeCCCCCchHHHHHHHHHcCCcEEeee
Confidence 35666666654 5799999998764 25689999999987653
No 410
>PRK12829 short chain dehydrogenase; Provisional
Probab=21.75 E-value=96 Score=24.24 Aligned_cols=33 Identities=6% Similarity=0.137 Sum_probs=22.9
Q ss_pred ceEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEcCC
Q 029508 9 AHAVCVPYPAQGHVSPMMQVAKLLHSKGFHITFVNTE 45 (192)
Q Consensus 9 ~~Il~~p~p~~GH~~P~l~La~~La~rGh~VT~it~~ 45 (192)
.++++.- +.|.+ -..+++.|+++|++|+.+.-.
T Consensus 12 ~~vlItG--a~g~i--G~~~a~~L~~~g~~V~~~~r~ 44 (264)
T PRK12829 12 LRVLVTG--GASGI--GRAIAEAFAEAGARVHVCDVS 44 (264)
T ss_pred CEEEEeC--CCCcH--HHHHHHHHHHCCCEEEEEeCC
Confidence 3555443 33554 478899999999998877643
No 411
>PRK08265 short chain dehydrogenase; Provisional
Probab=21.73 E-value=2.2e+02 Score=22.36 Aligned_cols=32 Identities=22% Similarity=0.154 Sum_probs=22.9
Q ss_pred eEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEcC
Q 029508 10 HAVCVPYPAQGHVSPMMQVAKLLHSKGFHITFVNT 44 (192)
Q Consensus 10 ~Il~~p~p~~GH~~P~l~La~~La~rGh~VT~it~ 44 (192)
+.++++..+ |. --.+++++|+++|++|+++.-
T Consensus 7 k~vlItGas-~g--IG~~ia~~l~~~G~~V~~~~r 38 (261)
T PRK08265 7 KVAIVTGGA-TL--IGAAVARALVAAGARVAIVDI 38 (261)
T ss_pred CEEEEECCC-Ch--HHHHHHHHHHHCCCEEEEEeC
Confidence 455565433 32 567899999999999988754
No 412
>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....
Probab=21.72 E-value=95 Score=23.58 Aligned_cols=22 Identities=18% Similarity=0.378 Sum_probs=17.6
Q ss_pred HHHHHHHHhCCCeEEEEcCCch
Q 029508 26 MQVAKLLHSKGFHITFVNTEFN 47 (192)
Q Consensus 26 l~La~~La~rGh~VT~it~~~~ 47 (192)
..+|..++.+|++|+++-....
T Consensus 12 ~~iA~~~a~~G~~V~l~d~~~~ 33 (180)
T PF02737_consen 12 RGIAALFARAGYEVTLYDRSPE 33 (180)
T ss_dssp HHHHHHHHHTTSEEEEE-SSHH
T ss_pred HHHHHHHHhCCCcEEEEECChH
Confidence 4688889999999999988654
No 413
>PRK12409 D-amino acid dehydrogenase small subunit; Provisional
Probab=21.70 E-value=87 Score=26.72 Aligned_cols=29 Identities=17% Similarity=0.306 Sum_probs=21.3
Q ss_pred eEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEc
Q 029508 10 HAVCVPYPAQGHVSPMMQVAKLLHSKGFHITFVN 43 (192)
Q Consensus 10 ~Il~~p~p~~GH~~P~l~La~~La~rGh~VT~it 43 (192)
+|+++-... --+..|.+|+++|++|+++=
T Consensus 3 ~vvIIGaG~-----~G~~~A~~La~~g~~V~vle 31 (410)
T PRK12409 3 HIAVIGAGI-----TGVTTAYALAQRGYQVTVFD 31 (410)
T ss_pred EEEEECCCH-----HHHHHHHHHHHCCCeEEEEe
Confidence 566665432 34677889999999999984
No 414
>PRK06101 short chain dehydrogenase; Provisional
Probab=21.70 E-value=97 Score=24.11 Aligned_cols=21 Identities=14% Similarity=0.151 Sum_probs=17.2
Q ss_pred HHHHHHHHHhCCCeEEEEcCC
Q 029508 25 MMQVAKLLHSKGFHITFVNTE 45 (192)
Q Consensus 25 ~l~La~~La~rGh~VT~it~~ 45 (192)
-.++++.|+++|++|.++.-.
T Consensus 14 G~~la~~L~~~G~~V~~~~r~ 34 (240)
T PRK06101 14 GKQLALDYAKQGWQVIACGRN 34 (240)
T ss_pred HHHHHHHHHhCCCEEEEEECC
Confidence 368999999999998887543
No 415
>PRK04940 hypothetical protein; Provisional
Probab=21.67 E-value=2.5e+02 Score=21.66 Aligned_cols=34 Identities=12% Similarity=0.101 Sum_probs=26.5
Q ss_pred eEEEEeCCCc-chHHHHHHHhCCceEEecCCchHH
Q 029508 119 VTCVVSDGIM-GFGRKAAQMLGILDIQFWTASACG 152 (192)
Q Consensus 119 ~d~vI~D~~~-~~~~~vA~~lgIP~i~~~t~~a~~ 152 (192)
..+||--.+- .|+.-+|+++|+|.|.+.+.--..
T Consensus 61 ~~~liGSSLGGyyA~~La~~~g~~aVLiNPAv~P~ 95 (180)
T PRK04940 61 RPLICGVGLGGYWAERIGFLCGIRQVIFNPNLFPE 95 (180)
T ss_pred CcEEEEeChHHHHHHHHHHHHCCCEEEECCCCChH
Confidence 4567666655 578899999999999999976543
No 416
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=21.65 E-value=2.1e+02 Score=24.51 Aligned_cols=41 Identities=15% Similarity=0.193 Sum_probs=36.0
Q ss_pred ceEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEcCCchhh
Q 029508 9 AHAVCVPYPAQGHVSPMMQVAKLLHSKGFHITFVNTEFNHR 49 (192)
Q Consensus 9 ~~Il~~p~p~~GH~~P~l~La~~La~rGh~VT~it~~~~~~ 49 (192)
.-|+++..=|.|--...-.||+.|.+.|..|.+...+.++.
T Consensus 140 ~Vil~vGVNG~GKTTTIaKLA~~l~~~g~~VllaA~DTFRA 180 (340)
T COG0552 140 FVILFVGVNGVGKTTTIAKLAKYLKQQGKSVLLAAGDTFRA 180 (340)
T ss_pred EEEEEEecCCCchHhHHHHHHHHHHHCCCeEEEEecchHHH
Confidence 34567788899999999999999999999999999887764
No 417
>PRK05579 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Validated
Probab=21.61 E-value=99 Score=26.94 Aligned_cols=20 Identities=20% Similarity=0.348 Sum_probs=0.0
Q ss_pred HHHHHHHHhCCCeEEEEcCC
Q 029508 26 MQVAKLLHSKGFHITFVNTE 45 (192)
Q Consensus 26 l~La~~La~rGh~VT~it~~ 45 (192)
..+|++|+++|++|+++...
T Consensus 218 ~aiA~~l~~~Ga~V~~v~~~ 237 (399)
T PRK05579 218 YALARAAARRGADVTLVSGP 237 (399)
T ss_pred HHHHHHHHHCCCEEEEeCCC
No 418
>PF02780 Transketolase_C: Transketolase, C-terminal domain; InterPro: IPR005476 Transketolase 2.2.1.1 from EC (TK) catalyzes the reversible transfer of a two-carbon ketol unit from xylulose 5-phosphate to an aldose receptor, such as ribose 5-phosphate, to form sedoheptulose 7-phosphate and glyceraldehyde 3- phosphate. This enzyme, together with transaldolase, provides a link between the glycolytic and pentose-phosphate pathways. TK requires thiamine pyrophosphate as a cofactor. In most sources where TK has been purified, it is a homodimer of approximately 70 Kd subunits. TK sequences from a variety of eukaryotic and prokaryotic sources [, ] show that the enzyme has been evolutionarily conserved. In the peroxisomes of methylotrophic yeast Pichia angusta (Yeast) (Hansenula polymorpha), there is a highly related enzyme, dihydroxy-acetone synthase (DHAS) 2.2.1.3 from EC (also known as formaldehyde transketolase), which exhibits a very unusual specificity by including formaldehyde amongst its substrates. 1-deoxyxylulose-5-phosphate synthase (DXP synthase) [] is an enzyme so far found in bacteria (gene dxs) and plants (gene CLA1) which catalyzes the thiamine pyrophosphoate-dependent acyloin condensation reaction between carbon atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D- xylulose-5-phosphate (dxp), a precursor in the biosynthetic pathway to isoprenoids, thiamine (vitamin B1), and pyridoxol (vitamin B6). DXP synthase is evolutionary related to TK. The N-terminal section, contains a histidine residue which appears to function in proton transfer during catalysis []. In the central section there are conserved acidic residues that are part of the active cleft and may participate in substrate-binding []. This family includes transketolase enzymes 2.2.1.1 from EC and also partially matches to 2-oxoisovalerate dehydrogenase beta subunit P37941 from SWISSPROT 1.2.4.4 from EC. Both these enzymes utilise thiamine pyrophosphate as a cofactor, suggesting there may be common aspects in their mechanism of catalysis.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 1NGS_B 1TKA_A 1TRK_B 1TKB_A 1GPU_B 1AY0_B 1TKC_B 2E6K_A 3JU3_A 2R8P_B ....
Probab=21.57 E-value=1.9e+02 Score=20.08 Aligned_cols=35 Identities=14% Similarity=0.257 Sum_probs=26.1
Q ss_pred CceEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEcC
Q 029508 8 KAHAVCVPYPAQGHVSPMMQVAKLLHSKGFHITFVNT 44 (192)
Q Consensus 8 ~~~Il~~p~p~~GH~~P~l~La~~La~rGh~VT~it~ 44 (192)
...++++.+...- ...++.++.|.+.|.+++++..
T Consensus 9 g~di~iia~G~~~--~~al~A~~~L~~~Gi~~~vi~~ 43 (124)
T PF02780_consen 9 GADITIIAYGSMV--EEALEAAEELEEEGIKAGVIDL 43 (124)
T ss_dssp SSSEEEEEETTHH--HHHHHHHHHHHHTTCEEEEEEE
T ss_pred CCCEEEEeehHHH--HHHHHHHHHHHHcCCceeEEee
Confidence 4567777754443 4578999999999999988754
No 419
>PF10727 Rossmann-like: Rossmann-like domain; InterPro: IPR019665 This entry represents an NAD/NADP-binding domain with a core Rossmann-type fold, found in an uncharacterised protein family thought to be putative NADP oxidoreductase coenzyme F420-dependent proteins and/or NAD-dependent glycerol-3-phosphate dehydrogenase-like proteins. This Rossmann-fold domain consists of 3-layers alpha/beta/alpha, where the six beta strands are parallel in the order 321456.; PDB: 3DFU_A 3C24_A.
Probab=21.55 E-value=1.2e+02 Score=21.93 Aligned_cols=37 Identities=16% Similarity=0.123 Sum_probs=25.2
Q ss_pred CCCceEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEcCCch
Q 029508 6 ARKAHAVCVPYPAQGHVSPMMQVAKLLHSKGFHITFVNTEFN 47 (192)
Q Consensus 6 ~~~~~Il~~p~p~~GH~~P~l~La~~La~rGh~VT~it~~~~ 47 (192)
..+.+|.++-..-.| ..|++.|.++||+|+-+...+.
T Consensus 8 ~~~l~I~iIGaGrVG-----~~La~aL~~ag~~v~~v~srs~ 44 (127)
T PF10727_consen 8 AARLKIGIIGAGRVG-----TALARALARAGHEVVGVYSRSP 44 (127)
T ss_dssp ----EEEEECTSCCC-----CHHHHHHHHTTSEEEEESSCHH
T ss_pred CCccEEEEECCCHHH-----HHHHHHHHHCCCeEEEEEeCCc
Confidence 347788888754445 3589999999999988876553
No 420
>TIGR01281 DPOR_bchL light-independent protochlorophyllide reductase, iron-sulfur ATP-binding protein. The BchL peptide (ChlL in chloroplast and cyanobacteria) is an ATP-binding iron-sulfur protein of the dark form protochlorophyllide reductase, an enzyme similar to nitrogenase. This subunit resembles the nitrogenase NifH subunit.
Probab=21.53 E-value=1.9e+02 Score=23.01 Aligned_cols=35 Identities=6% Similarity=0.048 Sum_probs=27.5
Q ss_pred EEEEcCCCccChHHHHHHHHHHHhCCCeEEEEcCC
Q 029508 11 AVCVPYPAQGHVSPMMQVAKLLHSKGFHITFVNTE 45 (192)
Q Consensus 11 Il~~p~p~~GH~~P~l~La~~La~rGh~VT~it~~ 45 (192)
|.++.=.|.|=-.-...||..|+++|++|-++=.+
T Consensus 3 i~~~gKGGVGKTT~~~nLA~~La~~g~rVLliD~D 37 (268)
T TIGR01281 3 LAVYGKGGIGKSTTSSNLSVAFAKLGKRVLQIGCD 37 (268)
T ss_pred EEEEcCCcCcHHHHHHHHHHHHHhCCCeEEEEecC
Confidence 55554456677788999999999999999988544
No 421
>KOG0332 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=21.53 E-value=81 Score=27.59 Aligned_cols=24 Identities=8% Similarity=0.364 Sum_probs=20.1
Q ss_pred HHHHHHHHHHhCCCeEEEEcCCch
Q 029508 24 PMMQVAKLLHSKGFHITFVNTEFN 47 (192)
Q Consensus 24 P~l~La~~La~rGh~VT~it~~~~ 47 (192)
...-|.++|++.||+|+++.+.-.
T Consensus 342 ta~~l~~~m~~~Gh~V~~l~G~l~ 365 (477)
T KOG0332|consen 342 TAMWLYEEMRAEGHQVSLLHGDLT 365 (477)
T ss_pred hHHHHHHHHHhcCceeEEeeccch
Confidence 456789999999999999988653
No 422
>PF08897 DUF1841: Domain of unknown function (DUF1841); InterPro: IPR014993 This group of proteins are functionally uncharacterised.
Probab=21.49 E-value=66 Score=23.72 Aligned_cols=18 Identities=28% Similarity=0.612 Sum_probs=16.0
Q ss_pred CCccChHHHHHHHHHHHh
Q 029508 17 PAQGHVSPMMQVAKLLHS 34 (192)
Q Consensus 17 p~~GH~~P~l~La~~La~ 34 (192)
|-.|-.||+++|+-+|+=
T Consensus 57 pe~G~tNPFLHlsmHLsI 74 (137)
T PF08897_consen 57 PEQGETNPFLHLSMHLSI 74 (137)
T ss_pred cccCccchhHHHHHHHHH
Confidence 678999999999999974
No 423
>PRK07533 enoyl-(acyl carrier protein) reductase; Provisional
Probab=21.48 E-value=2.5e+02 Score=22.13 Aligned_cols=35 Identities=11% Similarity=-0.015 Sum_probs=25.0
Q ss_pred CceEEEEcCCCcc-ChHHHHHHHHHHHhCCCeEEEEcC
Q 029508 8 KAHAVCVPYPAQG-HVSPMMQVAKLLHSKGFHITFVNT 44 (192)
Q Consensus 8 ~~~Il~~p~p~~G-H~~P~l~La~~La~rGh~VT~it~ 44 (192)
+.++++++..+.| - --.++|++|+++|++|.+..-
T Consensus 9 ~~k~~lItGas~g~G--IG~a~a~~la~~G~~v~l~~r 44 (258)
T PRK07533 9 AGKRGLVVGIANEQS--IAWGCARAFRALGAELAVTYL 44 (258)
T ss_pred CCCEEEEECCCCCCc--HHHHHHHHHHHcCCEEEEEeC
Confidence 4467778765531 2 348899999999999877643
No 424
>PF01370 Epimerase: NAD dependent epimerase/dehydratase family; InterPro: IPR001509 This family of proteins utilise NAD as a cofactor. The proteins in this family use nucleotide-sugar substrates for a variety of chemical reactions []. It contains the NAD(P)- binding domain (IPR016040 from INTERPRO) which is a commonly found domain with a core Rossmann-type fold. One of the best studied of these proteins is UDP-galactose 4-epimerase which catalyses the conversion of UDP-galactose to UDP-glucose during galactose metabolism [, ].; GO: 0003824 catalytic activity, 0050662 coenzyme binding, 0044237 cellular metabolic process; PDB: 2NNL_D 3C1T_B 3BXX_C 2IOD_C 2X4G_A 2Q1W_B 3SLG_B 1R66_A 1R6D_A 1KEU_B ....
Probab=21.45 E-value=1.3e+02 Score=22.99 Aligned_cols=25 Identities=16% Similarity=0.224 Sum_probs=19.2
Q ss_pred HHHHHHHHHhCCCeEEEEcCCchhh
Q 029508 25 MMQVAKLLHSKGFHITFVNTEFNHR 49 (192)
Q Consensus 25 ~l~La~~La~rGh~VT~it~~~~~~ 49 (192)
-..|++.|.++|++|+.++......
T Consensus 11 G~~l~~~l~~~g~~v~~~~~~~~~~ 35 (236)
T PF01370_consen 11 GSALVRQLLKKGHEVIVLSRSSNSE 35 (236)
T ss_dssp HHHHHHHHHHTTTEEEEEESCSTGG
T ss_pred HHHHHHHHHHcCCcccccccccccc
Confidence 3468999999999988777655443
No 425
>cd03466 Nitrogenase_NifN_2 Nitrogenase_nifN_2: A subgroup of the NifN subunit of the NifEN complex: NifN forms an alpha2beta2 tetramer with NifE. NifN and nifE are structurally homologous to nitrogenase MoFe protein beta and alpha subunits respectively. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of the MoFe protein. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to the NifEN complex where it is further processed to FeMoco. The nifEN bound precursor of FeMoco has been identified as a molybdenum-free, iron- and sulfur- containing analog of FeMoco. It has been suggested that this nifEN bound precursor also acts as a cofactor precursor in nitrogenase systems which require a cofactor other than FeMoco: i.e. iron-vanadium cofactor (FeVco) or iron only cofactor (FeFeco). This group also contains the Clostidium fused NifN-NifB protein.
Probab=21.44 E-value=2.2e+02 Score=24.82 Aligned_cols=40 Identities=13% Similarity=0.157 Sum_probs=28.1
Q ss_pred CeEEEEe---CCCcchHHHHHHHhCCceEEe-cCCchHHHHHHH
Q 029508 118 PVTCVVS---DGIMGFGRKAAQMLGILDIQF-WTASACGMMGYL 157 (192)
Q Consensus 118 ~~d~vI~---D~~~~~~~~vA~~lgIP~i~~-~t~~a~~~~~~~ 157 (192)
...+++. +.....+..+-+++|||++.+ .+.+.....-++
T Consensus 222 ~lniv~~~~~~~g~~~A~~L~e~~giP~~~~~~P~G~~~t~~~l 265 (429)
T cd03466 222 KATIELGMFVDHGLSAGSYLEEEFGIPNYRLPLPIGLRATDEFM 265 (429)
T ss_pred cEEEEEccCccchHHHHHHHHHHHCCCeeecCCCcChHHHHHHH
Confidence 5777876 344456778889999998876 557766665554
No 426
>PRK05557 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated
Probab=21.44 E-value=1e+02 Score=23.69 Aligned_cols=22 Identities=14% Similarity=0.140 Sum_probs=18.1
Q ss_pred HHHHHHHHHHhCCCeEEEEcCC
Q 029508 24 PMMQVAKLLHSKGFHITFVNTE 45 (192)
Q Consensus 24 P~l~La~~La~rGh~VT~it~~ 45 (192)
--..+++.|+++|++|++++..
T Consensus 17 iG~~l~~~l~~~G~~v~~~~~~ 38 (248)
T PRK05557 17 IGRAIAERLAAQGANVVINYAS 38 (248)
T ss_pred HHHHHHHHHHHCCCEEEEEeCC
Confidence 4678999999999999777653
No 427
>TIGR03649 ergot_EASG ergot alkaloid biosynthesis protein, AFUA_2G17970 family. This family consists of fungal proteins of unknown function associated with secondary metabolite biosynthesis, such as of the ergot alkaloids such as ergovaline. Nomenclature differs because gene order differs - this is EasG in Neotyphodium lolii but is designated ergot alkaloid biosynthetic protein A in several other fungi.
Probab=21.32 E-value=83 Score=25.22 Aligned_cols=27 Identities=15% Similarity=0.281 Sum_probs=20.1
Q ss_pred CccChHHHHHHHHHHHhCCCeEEEEcCCc
Q 029508 18 AQGHVSPMMQVAKLLHSKGFHITFVNTEF 46 (192)
Q Consensus 18 ~~GH~~P~l~La~~La~rGh~VT~it~~~ 46 (192)
+.|.+ -..++++|.++||+|+.++-..
T Consensus 7 atG~i--G~~vv~~L~~~g~~V~~~~R~~ 33 (285)
T TIGR03649 7 GTGKT--ASRIARLLQAASVPFLVASRSS 33 (285)
T ss_pred CCChH--HHHHHHHHHhCCCcEEEEeCCC
Confidence 44553 4567889999999999987543
No 428
>cd00806 TrpRS_core catalytic core domain of tryptophanyl-tRNA synthetase. Tryptophanyl-tRNA synthetase (TrpRS) catalytic core domain. TrpRS is a homodimer which attaches Tyr to the appropriate tRNA. TrpRS is a class I tRNA synthetases, so it aminoacylates the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains class I characteristic HIGH and KMSKS motifs, which are involved in ATP binding
Probab=21.29 E-value=1e+02 Score=25.32 Aligned_cols=27 Identities=19% Similarity=0.391 Sum_probs=23.6
Q ss_pred cChHHHHHHHHHHHhCCCeEEEEcCCc
Q 029508 20 GHVSPMMQVAKLLHSKGFHITFVNTEF 46 (192)
Q Consensus 20 GH~~P~l~La~~La~rGh~VT~it~~~ 46 (192)
||+.+.+...+.|.+.|+++.+...+.
T Consensus 15 G~~~~al~~~~~lQ~ag~~~~~~IaD~ 41 (280)
T cd00806 15 GHYLGAFRFWVWLQEAGYELFFFIADL 41 (280)
T ss_pred HHHHHHHHHHHHHHhCCCCEEEEecch
Confidence 899998888899988899999987764
No 429
>PRK06180 short chain dehydrogenase; Provisional
Probab=21.27 E-value=97 Score=24.74 Aligned_cols=26 Identities=8% Similarity=-0.061 Sum_probs=20.1
Q ss_pred CccChHHHHHHHHHHHhCCCeEEEEcCC
Q 029508 18 AQGHVSPMMQVAKLLHSKGFHITFVNTE 45 (192)
Q Consensus 18 ~~GH~~P~l~La~~La~rGh~VT~it~~ 45 (192)
+.|. --..++++|+++|++|..+.-.
T Consensus 12 asgg--iG~~la~~l~~~G~~V~~~~r~ 37 (277)
T PRK06180 12 VSSG--FGRALAQAALAAGHRVVGTVRS 37 (277)
T ss_pred CCCh--HHHHHHHHHHhCcCEEEEEeCC
Confidence 3454 4678999999999999887654
No 430
>cd00316 Oxidoreductase_nitrogenase The nitrogenase enzyme system catalyzes the ATP-dependent reduction of dinitrogen to ammonia. This group contains both alpha and beta subunits of component 1 of the three known genetically distinct types of nitrogenase systems: a molybdenum-dependent nitrogenase (Mo-nitrogenase), a vanadium-dependent nitrogenase (V-nitrogenase), and an iron-only nitrogenase (Fe-nitrogenase) and, both subunits of Protochlorophyllide (Pchlide) reductase and chlorophyllide (chlide) reductase. The nitrogenase systems consist of component 1 (MoFe protein, VFe protein or, FeFe protein respectively) and, component 2 (Fe protein). The most widespread and best characterized nitrogenase is the Mo-nitrogenase. MoFe is an alpha2beta2 tetramer, the alternative nitrogenases are alpha2beta2delta2 hexamers whose alpha and beta subunits are similar to the alpha and beta subunits of MoFe. For MoFe, each alphabeta pair contains one P-cluster (at the alphabeta interface) and, one molec
Probab=21.21 E-value=1.9e+02 Score=24.59 Aligned_cols=41 Identities=15% Similarity=0.107 Sum_probs=31.7
Q ss_pred CeEEEEeC-CCcchHHHHHHHhCCceEEecCCchHHHHHHHh
Q 029508 118 PVTCVVSD-GIMGFGRKAAQMLGILDIQFWTASACGMMGYLQ 158 (192)
Q Consensus 118 ~~d~vI~D-~~~~~~~~vA~~lgIP~i~~~t~~a~~~~~~~~ 158 (192)
...++++. ....++..+.+++|+|++...+.+.....-++.
T Consensus 202 ~~nlv~~~~~g~~~a~~l~~~~g~p~~~~~p~G~~~t~~~l~ 243 (399)
T cd00316 202 KLNLVLCRESGLYLARYLEEKYGIPYILINPIGLEATDAFLR 243 (399)
T ss_pred cEEEEecHhHHHHHHHHHHHHhCCCeEEeCCcCHHHHHHHHH
Confidence 57777776 555677888889999999988888777766653
No 431
>PF02702 KdpD: Osmosensitive K+ channel His kinase sensor domain; InterPro: IPR003852 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. Signal transducing histidine kinases are the key elements in two-component signal transduction systems, which control complex processes such as the initiation of development in microorganisms [, ]. Examples of histidine kinases are EnvZ, which plays a central role in osmoregulation [], and CheA, which plays a central role in the chemotaxis system []. Histidine kinases usually have an N-terminal ligand-binding domain and a C-terminal kinase domain, but other domains may also be present. The kinase domain is responsible for the autophosphorylation of the histidine with ATP, the phosphotransfer from the kinase to an aspartate of the response regulator, and (with bifunctional enzymes) the phosphotransfer from aspartyl phosphate back to ADP or to water []. The kinase core has a unique fold, distinct from that of the Ser/Thr/Tyr kinase superfamily. HKs can be roughly divided into two classes: orthodox and hybrid kinases [, ]. Most orthodox HKs, typified by the Escherichia coli EnvZ protein, function as periplasmic membrane receptors and have a signal peptide and transmembrane segment(s) that separate the protein into a periplasmic N-terminal sensing domain and a highly conserved cytoplasmic C-terminal kinase core. Members of this family, however, have an integral membrane sensor domain. Not all orthodox kinases are membrane bound, e.g., the nitrogen regulatory kinase NtrB (GlnL) is a soluble cytoplasmic HK []. Hybrid kinases contain multiple phosphodonor and phosphoacceptor sites and use multi-step phospho-relay schemes instead of promoting a single phosphoryl transfer. In addition to the sensor domain and kinase core, they contain a CheY-like receiver domain and a His-containing phosphotransfer (HPt) domain. This entry represents the N-terminal domain found in KdpD sensor kinase proteins, which regulate the kdpFABC operon responsible for potassium transport []. The N-terminal domain forms part of the cytoplasmic region of the protein, which may be the sensor domain responsible for sensing turgor pressure [].; GO: 0000155 two-component sensor activity, 0004673 protein histidine kinase activity, 0000160 two-component signal transduction system (phosphorelay), 0016020 membrane; PDB: 2R8R_B.
Probab=21.18 E-value=2e+02 Score=22.89 Aligned_cols=38 Identities=21% Similarity=0.282 Sum_probs=29.7
Q ss_pred CceEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEcCC
Q 029508 8 KAHAVCVPYPAQGHVSPMMQVAKLLHSKGFHITFVNTE 45 (192)
Q Consensus 8 ~~~Il~~p~p~~GH~~P~l~La~~La~rGh~VT~it~~ 45 (192)
+.+|.+=..||.|--.-|++=|+.|.++|.+|.+-..+
T Consensus 5 rLkIflG~apGVGKTy~ML~ea~~l~~~G~DVViG~ve 42 (211)
T PF02702_consen 5 RLKIFLGAAPGVGKTYAMLQEAHRLKEQGVDVVIGYVE 42 (211)
T ss_dssp -EEEEEESSTTSSHHHHHHHHHHHHHHTT--EEEEE--
T ss_pred cEEEEEecCCCCCHHHHHHHHHHHHHHCCCCEEEEEec
Confidence 56788888899999999999999999999999885443
No 432
>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family. Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.
Probab=21.15 E-value=1.2e+02 Score=23.79 Aligned_cols=29 Identities=21% Similarity=0.159 Sum_probs=21.4
Q ss_pred EEEcCCCccChHHHHHHHHHHHhCCCeEEEEcCCc
Q 029508 12 VCVPYPAQGHVSPMMQVAKLLHSKGFHITFVNTEF 46 (192)
Q Consensus 12 l~~p~p~~GH~~P~l~La~~La~rGh~VT~it~~~ 46 (192)
++.+.-|.|+- +..||++||+||-+=...
T Consensus 38 vLd~GCG~G~d------a~~LA~~G~~V~gvD~S~ 66 (213)
T TIGR03840 38 VFVPLCGKSLD------LAWLAEQGHRVLGVELSE 66 (213)
T ss_pred EEEeCCCchhH------HHHHHhCCCeEEEEeCCH
Confidence 55666777864 667789999999886544
No 433
>TIGR00640 acid_CoA_mut_C methylmalonyl-CoA mutase C-terminal domain. Methylmalonyl-CoA mutase (EC 5.4.99.2) catalyzes a reversible isomerization between L-methylmalonyl-CoA and succinyl-CoA. The enzyme uses an adenosylcobalamin cofactor. It may be a homodimer, as in mitochondrion, or a heterodimer with partially homologous beta chain that does not bind the adenosylcobalamin cofactor, as in Propionibacterium freudenreichii. The most similar archaeal sequences are separate chains, such as AF2215 and AF2219 of Archaeoglobus fulgidus, that correspond roughly to the first 500 and last 130 residues, respectively of known methylmalonyl-CoA mutases. This model describes the C-terminal domain subfamily. In a neighbor-joining tree (methylaspartate mutase S chain as the outgroup), AF2219 branches with a coenzyme B12-dependent enzyme known not to be 5.4.99.2.
Probab=21.13 E-value=3e+02 Score=19.86 Aligned_cols=44 Identities=11% Similarity=0.135 Sum_probs=34.0
Q ss_pred CceEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEcCCchhhhh
Q 029508 8 KAHAVCVPYPAQGHVSPMMQVAKLLHSKGFHITFVNTEFNHRRL 51 (192)
Q Consensus 8 ~~~Il~~p~p~~GH~~P~l~La~~La~rGh~VT~it~~~~~~~~ 51 (192)
+.+|++...-+-+|-.=--=++..|...|++|.........+.+
T Consensus 2 ~~~v~~a~~g~D~Hd~g~~iv~~~l~~~GfeVi~lg~~~s~e~~ 45 (132)
T TIGR00640 2 RPRILVAKMGQDGHDRGAKVIATAYADLGFDVDVGPLFQTPEEI 45 (132)
T ss_pred CCEEEEEeeCCCccHHHHHHHHHHHHhCCcEEEECCCCCCHHHH
Confidence 56888888777899877777777788899999998876544443
No 434
>PRK03359 putative electron transfer flavoprotein FixA; Reviewed
Probab=21.11 E-value=1.7e+02 Score=23.92 Aligned_cols=31 Identities=13% Similarity=0.070 Sum_probs=23.2
Q ss_pred CeEEEEeCCCc-----c-hHHHHHHHhCCceEEecCC
Q 029508 118 PVTCVVSDGIM-----G-FGRKAAQMLGILDIQFWTA 148 (192)
Q Consensus 118 ~~d~vI~D~~~-----~-~~~~vA~~lgIP~i~~~t~ 148 (192)
.||+|++-... + -+..+|+.||+|++.+-+.
T Consensus 112 ~~DLVl~G~~s~D~~tgqvg~~lAe~Lg~P~vt~v~~ 148 (256)
T PRK03359 112 GFDLILCGDGSSDLYAQQVGLLVGEILNIPAINGVSK 148 (256)
T ss_pred CCCEEEEcCccccCCCCcHHHHHHHHhCCCceeeEEE
Confidence 59999985433 1 2468999999999877654
No 435
>PRK12377 putative replication protein; Provisional
Probab=21.02 E-value=1.6e+02 Score=23.82 Aligned_cols=43 Identities=21% Similarity=0.193 Sum_probs=30.4
Q ss_pred ceEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEcCCchhhhh
Q 029508 9 AHAVCVPYPAQGHVSPMMQVAKLLHSKGFHITFVNTEFNHRRL 51 (192)
Q Consensus 9 ~~Il~~p~p~~GH~~P~l~La~~La~rGh~VT~it~~~~~~~~ 51 (192)
..+++...||.|=-.-+..+++.|.++|+.|.+++.......+
T Consensus 102 ~~l~l~G~~GtGKThLa~AIa~~l~~~g~~v~~i~~~~l~~~l 144 (248)
T PRK12377 102 TNFVFSGKPGTGKNHLAAAIGNRLLAKGRSVIVVTVPDVMSRL 144 (248)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEEEHHHHHHHH
Confidence 3577777777775556778888888888888887765544433
No 436
>PRK08277 D-mannonate oxidoreductase; Provisional
Probab=20.99 E-value=2.2e+02 Score=22.51 Aligned_cols=33 Identities=12% Similarity=0.063 Sum_probs=23.4
Q ss_pred ceEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEcC
Q 029508 9 AHAVCVPYPAQGHVSPMMQVAKLLHSKGFHITFVNT 44 (192)
Q Consensus 9 ~~Il~~p~p~~GH~~P~l~La~~La~rGh~VT~it~ 44 (192)
.+.++++..+.| --..++++|+++|++|.++.-
T Consensus 10 ~k~vlVtGas~g---iG~~ia~~l~~~G~~V~~~~r 42 (278)
T PRK08277 10 GKVAVITGGGGV---LGGAMAKELARAGAKVAILDR 42 (278)
T ss_pred CCEEEEeCCCch---HHHHHHHHHHHCCCEEEEEeC
Confidence 355666644332 348899999999999988764
No 437
>PRK12823 benD 1,6-dihydroxycyclohexa-2,4-diene-1-carboxylate dehydrogenase; Provisional
Probab=20.96 E-value=1e+02 Score=24.16 Aligned_cols=33 Identities=21% Similarity=0.128 Sum_probs=22.5
Q ss_pred eEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEcCC
Q 029508 10 HAVCVPYPAQGHVSPMMQVAKLLHSKGFHITFVNTE 45 (192)
Q Consensus 10 ~Il~~p~p~~GH~~P~l~La~~La~rGh~VT~it~~ 45 (192)
+.++++..+ |- --.+++++|+++|++|.++.-.
T Consensus 9 k~vlVtGas-~g--IG~~la~~l~~~G~~v~~~~r~ 41 (260)
T PRK12823 9 KVVVVTGAA-QG--IGRGVALRAAAEGARVVLVDRS 41 (260)
T ss_pred CEEEEeCCC-ch--HHHHHHHHHHHCCCEEEEEeCc
Confidence 455555433 22 3467999999999999877543
No 438
>cd01020 TroA_b Metal binding protein TroA_b. These proteins are predicted to function as initial receptors in ABC transport of metal ions. They belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind the metal ion in the cleft between these domains. In addition, these proteins sometimes have a low complexity region containing a metal-binding histidine-rich motif (repetitive HDH sequence).
Probab=20.96 E-value=2.3e+02 Score=22.88 Aligned_cols=39 Identities=5% Similarity=0.108 Sum_probs=27.4
Q ss_pred HHHHHHHhhcCCCCCCCCeEEEEeCCCcch--HH---HHHHHhCCceEEe
Q 029508 101 FLELLGKLNSSADDQVPPVTCVVSDGIMGF--GR---KAAQMLGILDIQF 145 (192)
Q Consensus 101 ~~~ll~~l~~~~~~~~~~~d~vI~D~~~~~--~~---~vA~~lgIP~i~~ 145 (192)
+.++.+.+++ .++.||+.+....- +. .+|++.|+|.+.+
T Consensus 195 l~~l~~~ik~------~~v~~if~e~~~~~k~~~~l~~la~~~~~~v~~l 238 (264)
T cd01020 195 IAAFQNAIKN------RQIDALIVNPQQASSATTNITGLAKRSGVPVVEV 238 (264)
T ss_pred HHHHHHHHHh------CCCCEEEeCCCCCcHHHHHHHHHHHHcCCCEEee
Confidence 4555665554 57889999987643 22 4589999999776
No 439
>PTZ00318 NADH dehydrogenase-like protein; Provisional
Probab=20.90 E-value=1.4e+02 Score=25.78 Aligned_cols=35 Identities=17% Similarity=0.231 Sum_probs=24.5
Q ss_pred CceEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEcCCch
Q 029508 8 KAHAVCVPYPAQGHVSPMMQVAKLLHSKGFHITFVNTEFN 47 (192)
Q Consensus 8 ~~~Il~~p~p~~GH~~P~l~La~~La~rGh~VT~it~~~~ 47 (192)
+.||+++-. |.+++ ..++.|...+++||++.....
T Consensus 10 ~~~vVIvGg-G~aGl----~~a~~L~~~~~~ItlI~~~~~ 44 (424)
T PTZ00318 10 KPNVVVLGT-GWAGA----YFVRNLDPKKYNITVISPRNH 44 (424)
T ss_pred CCeEEEECC-CHHHH----HHHHHhCcCCCeEEEEcCCCC
Confidence 668888863 44443 457888767899999976543
No 440
>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=20.90 E-value=1.3e+02 Score=24.72 Aligned_cols=34 Identities=15% Similarity=0.108 Sum_probs=25.7
Q ss_pred CceEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEcCCc
Q 029508 8 KAHAVCVPYPAQGHVSPMMQVAKLLHSKGFHITFVNTEF 46 (192)
Q Consensus 8 ~~~Il~~p~p~~GH~~P~l~La~~La~rGh~VT~it~~~ 46 (192)
..+|.++-....|. .+|..|+.+||+|+++....
T Consensus 5 ~~~V~ViGaG~mG~-----~iA~~~a~~G~~V~l~d~~~ 38 (286)
T PRK07819 5 IQRVGVVGAGQMGA-----GIAEVCARAGVDVLVFETTE 38 (286)
T ss_pred ccEEEEEcccHHHH-----HHHHHHHhCCCEEEEEECCH
Confidence 34788886554454 67888999999999997654
No 441
>PF00072 Response_reg: Response regulator receiver domain; InterPro: IPR001789 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. Bipartite response regulator proteins are involved in a two-component signal transduction system in bacteria, and certain eukaryotes like protozoa, that functions to detect and respond to environmental changes []. These systems have been detected during host invasion, drug resistance, motility, phosphate uptake, osmoregulation, and nitrogen fixation, amongst others []. The two-component system consists of a histidine protein kinase environmental sensor that phosphorylates the receiver domain of a response regulator protein; phosphorylation induces a conformational change in the response regulator, which activates the effector domain, triggering the cellular response []. The domains of the two-component proteins are highly modular, but the core structures and activities are maintained. The response regulators act as phosphorylation-activated switches to affect a cellular response, usually by transcriptional regulation. Most of these proteins consist of two domains, an N-terminal response regulator receiver domain, and a variable C-terminal effector domain with DNA-binding activity. This entry represents the response regulator receiver domain, which belongs to the CheY family, and receives the signal from the sensor partner in the two-component system.; GO: 0000156 two-component response regulator activity, 0000160 two-component signal transduction system (phosphorelay), 0006355 regulation of transcription, DNA-dependent; PDB: 2QR3_A 2QXY_A 1I3C_A 1JLK_A 2PKX_A 2PL1_A 3H1F_A 3H1E_A 3GWG_A 3H1G_A ....
Probab=20.88 E-value=2.5e+02 Score=18.27 Aligned_cols=34 Identities=15% Similarity=0.041 Sum_probs=21.5
Q ss_pred CCeEEEEeCCCcch--HHHHHH----Hh-CCceEEecCCch
Q 029508 117 PPVTCVVSDGIMGF--GRKAAQ----ML-GILDIQFWTASA 150 (192)
Q Consensus 117 ~~~d~vI~D~~~~~--~~~vA~----~l-gIP~i~~~t~~a 150 (192)
.+||++|.|.-... +..+++ .. ++|.+.+....-
T Consensus 42 ~~~d~iiid~~~~~~~~~~~~~~i~~~~~~~~ii~~t~~~~ 82 (112)
T PF00072_consen 42 HPPDLIIIDLELPDGDGLELLEQIRQINPSIPIIVVTDEDD 82 (112)
T ss_dssp STESEEEEESSSSSSBHHHHHHHHHHHTTTSEEEEEESSTS
T ss_pred cCceEEEEEeeeccccccccccccccccccccEEEecCCCC
Confidence 47999999975532 333333 32 688887775543
No 442
>cd06559 Endonuclease_V Endonuclease_V, a DNA repair enzyme that initiates repair of nitrosative deaminated purine bases. Endonuclease_V (EndoV) is an enzyme that can initiate repair of all possible deaminated DNA bases. EndoV cleaves the DNA strand containing lesions at the second phosphodiester bond 3' to the lesion using Mg2+ as a cofactor. EndoV homologs are conserved throughout all domains of life from bacteria to humans. EndoV is encoded by the nfi gene and nfi null mutant mice have a phenotype prone to cancer. The ability of endonuclease V to recognize mismatches and abnormal replicative DNA structures suggests that the enzyme plays an important role in DNA metabolism. The details of downstream processing for the EndoV pathway remain unknown.
Probab=20.73 E-value=1e+02 Score=24.38 Aligned_cols=43 Identities=26% Similarity=0.197 Sum_probs=27.8
Q ss_pred HHHHHHHHHhhcCCCCCCCCeEEEEeCCCcch---HHHHHHH----hCCceEEecCC
Q 029508 99 APFLELLGKLNSSADDQVPPVTCVVSDGIMGF---GRKAAQM----LGILDIQFWTA 148 (192)
Q Consensus 99 ~~~~~ll~~l~~~~~~~~~~~d~vI~D~~~~~---~~~vA~~----lgIP~i~~~t~ 148 (192)
+.+.+.++++. ..||+|+.|..-.+ ...+|.. +++|+|...=.
T Consensus 81 p~l~~~~~~l~-------~~PDlilVDG~G~~HpR~~GlA~HlGv~l~~PtIGVAK~ 130 (208)
T cd06559 81 PPLLEALEKLK-------TKPDLLLVDGHGIAHPRRFGLASHLGVLLDLPTIGVAKS 130 (208)
T ss_pred HHHHHHHHhCC-------CCCCEEEEeCCccccCCCcchhheeeeecCCCEEEEEcc
Confidence 44667777764 37999999975422 2456654 46888875543
No 443
>CHL00072 chlL photochlorophyllide reductase subunit L
Probab=20.73 E-value=2.2e+02 Score=23.40 Aligned_cols=37 Identities=8% Similarity=0.088 Sum_probs=30.5
Q ss_pred eEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEcCCc
Q 029508 10 HAVCVPYPAQGHVSPMMQVAKLLHSKGFHITFVNTEF 46 (192)
Q Consensus 10 ~Il~~p~p~~GH~~P~l~La~~La~rGh~VT~it~~~ 46 (192)
+|+++-=.|.|=-.....||..|+++|.+|-++-.+.
T Consensus 2 ~ia~~gKGGVGKTTta~nLA~~La~~G~rVLlID~Dp 38 (290)
T CHL00072 2 KLAVYGKGGIGKSTTSCNISIALARRGKKVLQIGCDP 38 (290)
T ss_pred eEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEeccC
Confidence 3666666778888999999999999999998886543
No 444
>PRK00784 cobyric acid synthase; Provisional
Probab=20.72 E-value=1.8e+02 Score=25.98 Aligned_cols=35 Identities=9% Similarity=0.272 Sum_probs=26.6
Q ss_pred eEEEE-cCCCccChHHHHHHHHHHHhCCCeEEEEcC
Q 029508 10 HAVCV-PYPAQGHVSPMMQVAKLLHSKGFHITFVNT 44 (192)
Q Consensus 10 ~Il~~-p~p~~GH~~P~l~La~~La~rGh~VT~it~ 44 (192)
.+.+. +-.+.|=-.-...|++.|.++|++|..+=+
T Consensus 4 ~ifItGT~T~vGKT~vt~~L~~~l~~~G~~v~~~Kp 39 (488)
T PRK00784 4 ALMVQGTASDAGKSTLVAGLCRILARRGYRVAPFKA 39 (488)
T ss_pred eEEEEeCCCCCcHHHHHHHHHHHHHHCCCeEecccc
Confidence 44544 335567778899999999999999987754
No 445
>TIGR00521 coaBC_dfp phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase, prokaryotic. This model represents a bifunctional enzyme that catalyzes the second and third steps (cysteine ligation, EC 6.3.2.5, and decarboxylation, EC 4.1.1.36) in the biosynthesis of coenzyme A (CoA) from pantothenate in bacteria. In early descriptions of this flavoprotein, a ts mutation in one region of the protein appeared to cause a defect in DNA metaobolism rather than an increased need for the pantothenate precursor beta-alanine. This protein was then called dfp, for DNA/pantothenate metabolism flavoprotein. The authors responsible for detecting phosphopantothenate--cysteine ligase activity suggest renaming this bifunctional protein coaBC for its role in CoA biosynthesis. This enzyme contains the FMN cofactor, but no FAD or pyruvoyl group. The amino-terminal region contains the phosphopantothenoylcysteine decarboxylase activity.
Probab=20.69 E-value=1.2e+02 Score=26.35 Aligned_cols=42 Identities=10% Similarity=0.063 Sum_probs=30.7
Q ss_pred ceEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEcCCchhhhh
Q 029508 9 AHAVCVPYPAQGHVSPMMQVAKLLHSKGFHITFVNTEFNHRRL 51 (192)
Q Consensus 9 ~~Il~~p~p~~GH~~P~l~La~~La~rGh~VT~it~~~~~~~~ 51 (192)
.||++.-. |.+...-..++.+.|.++|++|.++.++...+.+
T Consensus 4 k~IllgiT-GSiaa~~~~~ll~~L~~~g~~V~vv~T~~A~~fv 45 (390)
T TIGR00521 4 KKILLGVT-GGIAAYKTVELVRELVRQGAEVKVIMTEAAKKFI 45 (390)
T ss_pred CEEEEEEe-CHHHHHHHHHHHHHHHhCCCEEEEEECHhHHHHH
Confidence 36655443 4445566899999999999999999988755433
No 446
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=20.67 E-value=2.1e+02 Score=24.02 Aligned_cols=40 Identities=10% Similarity=0.128 Sum_probs=33.9
Q ss_pred ceEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEcCCchh
Q 029508 9 AHAVCVPYPAQGHVSPMMQVAKLLHSKGFHITFVNTEFNH 48 (192)
Q Consensus 9 ~~Il~~p~p~~GH~~P~l~La~~La~rGh~VT~it~~~~~ 48 (192)
.-++++..+|.|=-.-...||..++.+|.+|.++..+...
T Consensus 115 ~vi~lvGpnGsGKTTt~~kLA~~l~~~g~~V~Li~~D~~r 154 (318)
T PRK10416 115 FVILVVGVNGVGKTTTIGKLAHKYKAQGKKVLLAAGDTFR 154 (318)
T ss_pred eEEEEECCCCCcHHHHHHHHHHHHHhcCCeEEEEecCccc
Confidence 3566778788899999999999999999999999887643
No 447
>TIGR00639 PurN phosphoribosylglycinamide formyltransferase, formyltetrahydrofolate-dependent. In phylogenetic analyses, the member from Saccharomyces cerevisiae shows a long branch length but membership in the family, while the formyltetrahydrofolate deformylases form a closely related outgroup.
Probab=20.59 E-value=3.6e+02 Score=20.72 Aligned_cols=46 Identities=15% Similarity=0.156 Sum_probs=27.9
Q ss_pred HHHHHHHHhhcCCCCCCCCeEEEEeCCCcchHHHHHHHhCCceEEecC
Q 029508 100 PFLELLGKLNSSADDQVPPVTCVVSDGIMGFGRKAAQMLGILDIQFWT 147 (192)
Q Consensus 100 ~~~~ll~~l~~~~~~~~~~~d~vI~D~~~~~~~~vA~~lgIP~i~~~t 147 (192)
.++.+++.+.+..- ...+.+||+|---..+...|+++|||++.+..
T Consensus 13 ~~~~ll~~~~~~~l--~~~I~~vi~~~~~~~~~~~A~~~gip~~~~~~ 58 (190)
T TIGR00639 13 NLQAIIDACKEGKI--PASVVLVISNKPDAYGLERAAQAGIPTFVLSL 58 (190)
T ss_pred hHHHHHHHHHcCCC--CceEEEEEECCccchHHHHHHHcCCCEEEECc
Confidence 34555555543100 02466778885333456889999999987654
No 448
>PRK01077 cobyrinic acid a,c-diamide synthase; Validated
Probab=20.51 E-value=3e+02 Score=24.28 Aligned_cols=36 Identities=11% Similarity=0.253 Sum_probs=26.6
Q ss_pred ceEEEEc-CCCccChHHHHHHHHHHHhCCCeEEEEcC
Q 029508 9 AHAVCVP-YPAQGHVSPMMQVAKLLHSKGFHITFVNT 44 (192)
Q Consensus 9 ~~Il~~p-~p~~GH~~P~l~La~~La~rGh~VT~it~ 44 (192)
.++++.. -.+.|=-.-...|++.|+++|++|..+-+
T Consensus 4 ~~i~I~gt~s~~GKT~it~~L~~~L~~~G~~V~~fK~ 40 (451)
T PRK01077 4 PALVIAAPASGSGKTTVTLGLMRALRRRGLRVQPFKV 40 (451)
T ss_pred cEEEEEeCCCCCcHHHHHHHHHHHHHhCCCCcceeec
Confidence 3455543 34557777789999999999999988754
No 449
>PRK10565 putative carbohydrate kinase; Provisional
Probab=20.50 E-value=1.5e+02 Score=26.80 Aligned_cols=33 Identities=21% Similarity=0.310 Sum_probs=26.2
Q ss_pred ceEEEEcCCCc--cChHHHHHHHHHHHhCCCeEEEEcC
Q 029508 9 AHAVCVPYPAQ--GHVSPMMQVAKLLHSKGFHITFVNT 44 (192)
Q Consensus 9 ~~Il~~p~p~~--GH~~P~l~La~~La~rGh~VT~it~ 44 (192)
.+|+++..+|- |. -+.+||.|.++|++|+++..
T Consensus 61 ~~v~vl~G~GNNGGD---G~v~AR~L~~~G~~V~v~~~ 95 (508)
T PRK10565 61 RHWLVLCGHGNNGGD---GYVVARLAQAAGIDVTLLAQ 95 (508)
T ss_pred CeEEEEEcCCCchHH---HHHHHHHHHHCCCceEEEEE
Confidence 47888886665 23 37889999999999999864
No 450
>TIGR01377 soxA_mon sarcosine oxidase, monomeric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=20.47 E-value=98 Score=25.90 Aligned_cols=21 Identities=14% Similarity=-0.002 Sum_probs=17.1
Q ss_pred HHHHHHHHHHhCCCeEEEEcC
Q 029508 24 PMMQVAKLLHSKGFHITFVNT 44 (192)
Q Consensus 24 P~l~La~~La~rGh~VT~it~ 44 (192)
--+..|.+|+++|++|+++--
T Consensus 11 ~G~s~A~~La~~g~~V~l~e~ 31 (380)
T TIGR01377 11 MGCFAAYHLAKHGKKTLLLEQ 31 (380)
T ss_pred HHHHHHHHHHHCCCeEEEEec
Confidence 346788999999999999843
No 451
>PRK06114 short chain dehydrogenase; Provisional
Probab=20.44 E-value=2e+02 Score=22.48 Aligned_cols=32 Identities=16% Similarity=0.163 Sum_probs=23.7
Q ss_pred eEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEcC
Q 029508 10 HAVCVPYPAQGHVSPMMQVAKLLHSKGFHITFVNT 44 (192)
Q Consensus 10 ~Il~~p~p~~GH~~P~l~La~~La~rGh~VT~it~ 44 (192)
+.++++..+.| --..+|++|+++|++|.++.-
T Consensus 9 k~~lVtG~s~g---IG~~ia~~l~~~G~~v~~~~r 40 (254)
T PRK06114 9 QVAFVTGAGSG---IGQRIAIGLAQAGADVALFDL 40 (254)
T ss_pred CEEEEECCCch---HHHHHHHHHHHCCCEEEEEeC
Confidence 55666644443 567899999999999988754
No 452
>PF03537 Glyco_hydro_114: Glycoside-hydrolase family GH114; InterPro: IPR004352 Eighty-one archaeal-like genes, ranging in size from 4-20kb, are clustered in 15 regions of the Thermotoga maritima genome []. Conservation of gene order between T. maritima and Archaea in many of these regions suggests that lateral gene transfer may have occurred between thermophilic Eubacteria and Archaea []. One of the T. maritima sequences (hypothetical protein TM1410) shares similarity with Methanocaldococcus jannaschii (Methanococcus jannaschii) hypothetical protein MJ1477 and with hypothetical protein DR0705 from Deinococcus radiodurans. The sequences are characterised by relatively variable N- and C-terminal domains, and a more conserved central domain. They share no similarity with any other known, functionally or structurally characterised proteins. ; PDB: 2AAM_F.
Probab=20.37 E-value=1.5e+02 Score=19.04 Aligned_cols=33 Identities=24% Similarity=0.182 Sum_probs=20.0
Q ss_pred CCeEEEEeCCCcchHHHHH--HHhCCceEEecCCc
Q 029508 117 PPVTCVVSDGIMGFGRKAA--QMLGILDIQFWTAS 149 (192)
Q Consensus 117 ~~~d~vI~D~~~~~~~~vA--~~lgIP~i~~~t~~ 149 (192)
.++|+++.|.+..-...++ +.-|.-+|++...+
T Consensus 25 ~~~~v~~iD~~~~~~~~I~~L~~~G~~vicY~s~G 59 (74)
T PF03537_consen 25 PDVDVVVIDLFDFSKEEIARLKAQGKKVICYFSIG 59 (74)
T ss_dssp SS-SEEEE-SBS--HHHHHHHHHTT-EEEEEEESS
T ss_pred CCCCEEEECCccCCHHHHHHHHHCCCEEEEEEeCc
Confidence 4799999999875444444 56688888776655
No 453
>PRK07364 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=20.37 E-value=94 Score=26.44 Aligned_cols=31 Identities=16% Similarity=0.184 Sum_probs=22.4
Q ss_pred CceEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEc
Q 029508 8 KAHAVCVPYPAQGHVSPMMQVAKLLHSKGFHITFVN 43 (192)
Q Consensus 8 ~~~Il~~p~p~~GH~~P~l~La~~La~rGh~VT~it 43 (192)
+.+|+++-.. .--+.+|..|+++|++|+++=
T Consensus 18 ~~dV~IvGaG-----~aGl~~A~~L~~~G~~v~v~E 48 (415)
T PRK07364 18 TYDVAIVGGG-----IVGLTLAAALKDSGLRIALIE 48 (415)
T ss_pred ccCEEEECcC-----HHHHHHHHHHhcCCCEEEEEe
Confidence 3466666543 234677889999999999984
No 454
>PRK13230 nitrogenase reductase-like protein; Reviewed
Probab=20.32 E-value=2.3e+02 Score=22.82 Aligned_cols=37 Identities=14% Similarity=0.160 Sum_probs=29.0
Q ss_pred ceEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEcCC
Q 029508 9 AHAVCVPYPAQGHVSPMMQVAKLLHSKGFHITFVNTE 45 (192)
Q Consensus 9 ~~Il~~p~p~~GH~~P~l~La~~La~rGh~VT~it~~ 45 (192)
.+|++.-=.|.|=-.-...||..|+++|.+|-++=.+
T Consensus 2 ~~i~~~gKGGVGKTT~a~nLA~~La~~G~rVLliD~D 38 (279)
T PRK13230 2 RKFCFYGKGGIGKSTTVCNIAAALAESGKKVLVVGCD 38 (279)
T ss_pred cEEEEECCCCCcHHHHHHHHHHHHHhCCCEEEEEeeC
Confidence 3566664466677788999999999999999888433
No 455
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=20.27 E-value=2.7e+02 Score=23.62 Aligned_cols=41 Identities=10% Similarity=0.135 Sum_probs=34.8
Q ss_pred CceEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEcCCchh
Q 029508 8 KAHAVCVPYPAQGHVSPMMQVAKLLHSKGFHITFVNTEFNH 48 (192)
Q Consensus 8 ~~~Il~~p~p~~GH~~P~l~La~~La~rGh~VT~it~~~~~ 48 (192)
...|.+...||.|=-.-...|++.|.++|++|.++..+...
T Consensus 56 ~~~igi~G~~GaGKSTl~~~l~~~l~~~g~~v~vi~~Dp~s 96 (332)
T PRK09435 56 ALRIGITGVPGVGKSTFIEALGMHLIEQGHKVAVLAVDPSS 96 (332)
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEeCCCc
Confidence 34566888899999988999999999999999999887644
No 456
>TIGR01969 minD_arch cell division ATPase MinD, archaeal. This model represents the archaeal branch of the MinD family. MinD, a weak ATPase, works in bacteria with MinC as a generalized cell division inhibitor and, through interaction with MinE, prevents septum placement inappropriate sites. Often several members of this family are found in archaeal genomes, and the function is uncharacterized. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. The exact roles of the various archaeal MinD homologs are unknown.
Probab=20.26 E-value=2.1e+02 Score=22.23 Aligned_cols=30 Identities=10% Similarity=0.187 Sum_probs=24.8
Q ss_pred CCccChHHHHHHHHHHHhCCCeEEEEcCCc
Q 029508 17 PAQGHVSPMMQVAKLLHSKGFHITFVNTEF 46 (192)
Q Consensus 17 p~~GH~~P~l~La~~La~rGh~VT~it~~~ 46 (192)
.|.|=-.-...||..|+++|++|-++-.+.
T Consensus 10 GGvGKTt~a~~LA~~la~~g~~VlliD~D~ 39 (251)
T TIGR01969 10 GGTGKTTITANLGVALAKLGKKVLALDADI 39 (251)
T ss_pred CCCcHHHHHHHHHHHHHHCCCeEEEEeCCC
Confidence 556777788899999999999999986554
No 457
>cd01019 ZnuA Zinc binding protein ZnuA. These proteins have been shown to function as initial receptors in the ABC uptake of Zn2+. They belong to the TroA superfamily of periplasmic metal binding proteins that share a distinct fold and ligand binding mechanism. They are comprised of two globular subdomains connected by a single helix and bind their specific ligands in the cleft between these domains. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind the metal ion in the cleft between these domains. In addition, these proteins sometimes have a low complexity region containing a metal-binding histidine-rich motif (repetitive HDH sequence).
Probab=20.23 E-value=2.4e+02 Score=23.11 Aligned_cols=44 Identities=11% Similarity=0.121 Sum_probs=30.8
Q ss_pred HHHHHHHHhhcCCCCCCCCeEEEEeCCCcc--hHHHHHHHhCCceEEecCCc
Q 029508 100 PFLELLGKLNSSADDQVPPVTCVVSDGIMG--FGRKAAQMLGILDIQFWTAS 149 (192)
Q Consensus 100 ~~~~ll~~l~~~~~~~~~~~d~vI~D~~~~--~~~~vA~~lgIP~i~~~t~~ 149 (192)
.+.++++.+++ .++.||+.+.... -+..++++.|++.+.+.+..
T Consensus 216 ~l~~l~~~ik~------~~v~~If~e~~~~~~~~~~ia~~~g~~v~~l~~l~ 261 (286)
T cd01019 216 RLAKIRKEIKE------KGATCVFAEPQFHPKIAETLAEGTGAKVGELDPLG 261 (286)
T ss_pred HHHHHHHHHHH------cCCcEEEecCCCChHHHHHHHHhcCceEEEecccc
Confidence 34556665554 5789999988764 34689999999887765543
No 458
>PRK06138 short chain dehydrogenase; Provisional
Probab=20.22 E-value=1.1e+02 Score=23.78 Aligned_cols=20 Identities=20% Similarity=0.278 Sum_probs=16.7
Q ss_pred HHHHHHHHHhCCCeEEEEcC
Q 029508 25 MMQVAKLLHSKGFHITFVNT 44 (192)
Q Consensus 25 ~l~La~~La~rGh~VT~it~ 44 (192)
-.+|++.|+++|++|..+.-
T Consensus 18 G~~la~~l~~~G~~v~~~~r 37 (252)
T PRK06138 18 GRATAKLFAREGARVVVADR 37 (252)
T ss_pred HHHHHHHHHHCCCeEEEecC
Confidence 56889999999999887754
No 459
>PRK09072 short chain dehydrogenase; Provisional
Probab=20.21 E-value=1.1e+02 Score=24.14 Aligned_cols=21 Identities=19% Similarity=0.260 Sum_probs=17.7
Q ss_pred HHHHHHHHHhCCCeEEEEcCC
Q 029508 25 MMQVAKLLHSKGFHITFVNTE 45 (192)
Q Consensus 25 ~l~La~~La~rGh~VT~it~~ 45 (192)
-.++++.|+++|++|+++.-.
T Consensus 18 G~~ia~~l~~~G~~V~~~~r~ 38 (263)
T PRK09072 18 GQALAEALAAAGARLLLVGRN 38 (263)
T ss_pred HHHHHHHHHHCCCEEEEEECC
Confidence 378999999999999888644
No 460
>COG0381 WecB UDP-N-acetylglucosamine 2-epimerase [Cell envelope biogenesis, outer membrane]
Probab=20.16 E-value=2e+02 Score=25.06 Aligned_cols=117 Identities=15% Similarity=0.100 Sum_probs=60.1
Q ss_pred CceEEEEcCCCccChHHHHHHHHHHHhCC-CeEEEEcCC-chhhhhhhccCCCccCCCCCceeEecCC-CCCCCCCCCCC
Q 029508 8 KAHAVCVPYPAQGHVSPMMQVAKLLHSKG-FHITFVNTE-FNHRRLIRSKGPEYVKGLPDFRFETIPD-GLPPSDRDATQ 84 (192)
Q Consensus 8 ~~~Il~~p~p~~GH~~P~l~La~~La~rG-h~VT~it~~-~~~~~~~~~~~~~~~~~~~~i~~~~l~~-~~~~~~~~~~~ 84 (192)
+.+|+++. ..+=-++=|-.|++++.+.+ .+..++.|. .....+.... . .. -+++. |+ .+... ....
T Consensus 3 ~~Kv~~I~-GTRPE~iKmapli~~~~~~~~~~~~vi~TGQH~d~em~~~~-l---e~-~~i~~---pdy~L~i~--~~~~ 71 (383)
T COG0381 3 MLKVLTIF-GTRPEAIKMAPLVKALEKDPDFELIVIHTGQHRDYEMLDQV-L---EL-FGIRK---PDYDLNIM--KPGQ 71 (383)
T ss_pred ceEEEEEE-ecCHHHHHHhHHHHHHHhCCCCceEEEEecccccHHHHHHH-H---HH-hCCCC---CCcchhcc--ccCC
Confidence 34555443 45667788999999999886 665555443 3322231110 0 00 01111 11 11000 0112
Q ss_pred CHHHHHHHHHHhCcHHHHHHHHHhhcCCCCCCCCeEEEEe--CCCcchH-HHHHHHhCCceEEecCC
Q 029508 85 DVPALSDSIRKNGLAPFLELLGKLNSSADDQVPPVTCVVS--DGIMGFG-RKAAQMLGILDIQFWTA 148 (192)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~d~vI~--D~~~~~~-~~vA~~lgIP~i~~~t~ 148 (192)
.+.+. ... +-..+.+++++ .+||+|+. |.-...+ ..+|.+++||+...-..
T Consensus 72 tl~~~---t~~-~i~~~~~vl~~---------~kPD~VlVhGDT~t~lA~alaa~~~~IpV~HvEAG 125 (383)
T COG0381 72 TLGEI---TGN-IIEGLSKVLEE---------EKPDLVLVHGDTNTTLAGALAAFYLKIPVGHVEAG 125 (383)
T ss_pred CHHHH---HHH-HHHHHHHHHHh---------hCCCEEEEeCCcchHHHHHHHHHHhCCceEEEecc
Confidence 23222 111 12446677775 47887776 7655444 67888999999876543
No 461
>PRK07577 short chain dehydrogenase; Provisional
Probab=20.12 E-value=1.1e+02 Score=23.40 Aligned_cols=21 Identities=10% Similarity=0.121 Sum_probs=17.0
Q ss_pred HHHHHHHHHhCCCeEEEEcCC
Q 029508 25 MMQVAKLLHSKGFHITFVNTE 45 (192)
Q Consensus 25 ~l~La~~La~rGh~VT~it~~ 45 (192)
-..+++.|+++|++|..+.-.
T Consensus 16 G~~ia~~l~~~G~~v~~~~r~ 36 (234)
T PRK07577 16 GLALSLRLANLGHQVIGIARS 36 (234)
T ss_pred HHHHHHHHHHCCCEEEEEeCC
Confidence 457899999999999887543
No 462
>PRK05642 DNA replication initiation factor; Validated
Probab=20.07 E-value=1.8e+02 Score=23.06 Aligned_cols=37 Identities=8% Similarity=0.038 Sum_probs=27.6
Q ss_pred ceEEEEcCCCcc--ChHHHHHHHHHHHhCCCeEEEEcCCch
Q 029508 9 AHAVCVPYPAQG--HVSPMMQVAKLLHSKGFHITFVNTEFN 47 (192)
Q Consensus 9 ~~Il~~p~p~~G--H~~P~l~La~~La~rGh~VT~it~~~~ 47 (192)
..+++...+|.| |+ +..+++++.++|++|.+++....
T Consensus 46 ~~l~l~G~~G~GKTHL--l~a~~~~~~~~~~~v~y~~~~~~ 84 (234)
T PRK05642 46 SLIYLWGKDGVGRSHL--LQAACLRFEQRGEPAVYLPLAEL 84 (234)
T ss_pred CeEEEECCCCCCHHHH--HHHHHHHHHhCCCcEEEeeHHHH
Confidence 345666666665 77 67788888889999999887553
No 463
>PF02571 CbiJ: Precorrin-6x reductase CbiJ/CobK; InterPro: IPR003723 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. This entry represents CobK and CbiJ precorrin-6x reductase (1.3.1.54 from EC). In the aerobic pathway, CobK catalyses the reduction of the macrocycle of precorrin-6X to produce precorrin-6Y; while in the anaerobic pathway CbiJ catalyses the reduction of the macrocycle of cobalt-precorrin-6X into cobalt-precorrin-6Y [, ].; GO: 0016994 precorrin-6A reductase activity, 0009236 cobalamin biosynthetic process, 0055114 oxidation-reduction process
Probab=20.04 E-value=2.2e+02 Score=23.09 Aligned_cols=36 Identities=14% Similarity=0.207 Sum_probs=23.9
Q ss_pred eEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEcCCchhhhh
Q 029508 10 HAVCVPYPAQGHVSPMMQVAKLLHSKGFHITFVNTEFNHRRL 51 (192)
Q Consensus 10 ~Il~~p~p~~GH~~P~l~La~~La~rGh~VT~it~~~~~~~~ 51 (192)
||+++..-.-| ..|++.|.++|+ |.+-+..++....
T Consensus 2 ~ILvlgGTtE~-----r~la~~L~~~g~-v~~sv~t~~g~~~ 37 (249)
T PF02571_consen 2 KILVLGGTTEG-----RKLAERLAEAGY-VIVSVATSYGGEL 37 (249)
T ss_pred EEEEEechHHH-----HHHHHHHHhcCC-EEEEEEhhhhHhh
Confidence 56666654444 479999999998 6665555555443
No 464
>TIGR02069 cyanophycinase cyanophycinase. This model describes both cytosolic and extracellular cyanophycinases. The former are part of a system in many Cyanobacteria and a few other species of generating and later utilizing a storage polymer for nitrogen, carbon, and energy, called cyanophycin. The latter are found in species such as Pseudomonas anguilliseptica that can use external cyanophycin. The polymer has a backbone of L-aspartic acid, with most Asp side chain carboxyl groups attached to L-arginine.
Probab=20.02 E-value=3.2e+02 Score=22.02 Aligned_cols=41 Identities=10% Similarity=0.171 Sum_probs=25.8
Q ss_pred CCCCceEEEEcCCCccChHHHHHHHHHHHhCCC-eEEEEcCC
Q 029508 5 GARKAHAVCVPYPAQGHVSPMMQVAKLLHSKGF-HITFVNTE 45 (192)
Q Consensus 5 ~~~~~~Il~~p~p~~GH~~P~l~La~~La~rGh-~VT~it~~ 45 (192)
+++.++|+++|..+...-.-.....+.+.+.|. +|+++...
T Consensus 25 g~~~~rI~~iptAS~~~~~~~~~~~~~~~~lG~~~v~~l~i~ 66 (250)
T TIGR02069 25 GGEDAIIVIITSASEEPREVGERYITIFSRLGVKEVKILDVR 66 (250)
T ss_pred CCCCceEEEEeCCCCChHHHHHHHHHHHHHcCCceeEEEecC
Confidence 445679999997764332224455666777887 46666543
Done!