BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 029509
(192 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9FLN4|RK27_ARATH 50S ribosomal protein L27, chloroplastic OS=Arabidopsis thaliana
GN=RPL27 PE=2 SV=1
Length = 198
Score = 272 bits (696), Expect = 9e-73, Method: Compositional matrix adjust.
Identities = 152/199 (76%), Positives = 167/199 (83%), Gaps = 10/199 (5%)
Query: 1 MATASMSASLIGSFKGLSLSSSSSSSFLKGDFTVCPK-SVTVSLPPT---SPLPLTIESA 56
MAT SMS +LIG+FKGLSLSS+SS +GD + PK S TV+LP +P+PLTIESA
Sbjct: 3 MAT-SMSLNLIGAFKGLSLSSTSSFL--RGDLSFSPKTSFTVTLPLENLQAPIPLTIESA 59
Query: 57 HKKGAGSTKNGRDSRGQRLGVKIFGDQVAKPGAIIVRQRGTKFHPGKNVGLGKDHTIFSL 116
HKKGAGSTKNGRDS GQRLGVKI+GDQVAKPGAIIVRQRGTKFH GKNVG+GKDHTIFSL
Sbjct: 60 HKKGAGSTKNGRDSPGQRLGVKIYGDQVAKPGAIIVRQRGTKFHAGKNVGIGKDHTIFSL 119
Query: 117 IDGLVKFEKFGPDRKQISVYPREVQPENPNSYRARKREYFRLQREKKKARKEAY---LAQ 173
IDGLVKFEKFGPDRK+ISVYPRE+ PENPNSYRARKRE FRLQREKKKAR+E Y L
Sbjct: 120 IDGLVKFEKFGPDRKKISVYPREIVPENPNSYRARKRENFRLQREKKKARRENYSYTLPT 179
Query: 174 PQLVLASALDDAADGLPNC 192
P+LVLASA D A+ P C
Sbjct: 180 PELVLASASVDDAEANPEC 198
>sp|P30155|RK27_TOBAC 50S ribosomal protein L27, chloroplastic OS=Nicotiana tabacum
GN=RPL27 PE=1 SV=1
Length = 179
Score = 244 bits (623), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 137/173 (79%), Positives = 149/173 (86%), Gaps = 9/173 (5%)
Query: 5 SMSASLIGSFKGLSLSSSSSSSFLKGDFT----VCPKSVTVSLPPTSPLPLTIESAHKKG 60
++S SL+G+FKGLSL+SSSS KGDF V PK +VS P SPL TIESAHKKG
Sbjct: 2 AVSFSLVGAFKGLSLASSSSFL--KGDFGAAFPVAPK-FSVSFPLKSPL--TIESAHKKG 56
Query: 61 AGSTKNGRDSRGQRLGVKIFGDQVAKPGAIIVRQRGTKFHPGKNVGLGKDHTIFSLIDGL 120
AGSTKNGRDS GQRLGVKIFGDQVAKPG+IIVRQRGTKFHPGKNVGLGKDHTIFSLIDGL
Sbjct: 57 AGSTKNGRDSPGQRLGVKIFGDQVAKPGSIIVRQRGTKFHPGKNVGLGKDHTIFSLIDGL 116
Query: 121 VKFEKFGPDRKQISVYPREVQPENPNSYRARKREYFRLQREKKKARKEAYLAQ 173
VKFEKFGPDRK+ISVYPREVQPENPNSYR RKRE FRLQRE++KAR+E + Q
Sbjct: 117 VKFEKFGPDRKKISVYPREVQPENPNSYRNRKRESFRLQRERRKARREGVILQ 169
>sp|O65037|RK27_ORYSJ 50S ribosomal protein L27, chloroplastic OS=Oryza sativa subsp.
japonica GN=RPL27 PE=2 SV=1
Length = 195
Score = 232 bits (591), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 127/196 (64%), Positives = 155/196 (79%), Gaps = 9/196 (4%)
Query: 4 ASMSASLIGSFKGLSLSSSSSSS----FLKGDFTVCPKSVTVSL--PPTSPLP-LTIESA 56
ASM+ +L+G+FKG+SLSS SS FL+ D V + P T P+ LTI+ A
Sbjct: 2 ASMAFTLVGAFKGMSLSSPCHSSSSASFLRADRVSLSVGGGVGMGVPMTMPVRRLTIQMA 61
Query: 57 HKKGAGSTKNGRDSRGQRLGVKIFGDQVAKPGAIIVRQRGTKFHPGKNVGLGKDHTIFSL 116
HKKGAGSTKNGRDS GQRLGVKI+GDQVAKPGAII+RQRGT+ +PG NVG+GKDHT+FSL
Sbjct: 62 HKKGAGSTKNGRDSPGQRLGVKIYGDQVAKPGAIIIRQRGTRVYPGNNVGMGKDHTLFSL 121
Query: 117 IDGLVKFEKFGPDRKQISVYPREVQPENPNSYRARKREYFRLQREKKKARKEAYLAQPQL 176
IDGLVKFEK+GPD+K++SVYP E QPENPNSYRARKREYFR+QRE+KKAR E + + QL
Sbjct: 122 IDGLVKFEKYGPDKKKVSVYPYEKQPENPNSYRARKREYFRMQRERKKARAEG-IVEVQL 180
Query: 177 VLASALDDAADGLPNC 192
VLA+A D++ + +C
Sbjct: 181 VLAAA-DESPEVNADC 195
>sp|A6Q4D3|RL27_NITSB 50S ribosomal protein L27 OS=Nitratiruptor sp. (strain SB155-2)
GN=rpmA PE=3 SV=1
Length = 85
Score = 128 bits (322), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 59/84 (70%), Positives = 71/84 (84%)
Query: 56 AHKKGAGSTKNGRDSRGQRLGVKIFGDQVAKPGAIIVRQRGTKFHPGKNVGLGKDHTIFS 115
AHKKG GST+N RDS G+RLGVK FG + + G II+RQRGTK HPG NVGLGKDHTIF+
Sbjct: 2 AHKKGQGSTQNNRDSAGRRLGVKKFGGEFVRAGNIIIRQRGTKVHPGNNVGLGKDHTIFA 61
Query: 116 LIDGLVKFEKFGPDRKQISVYPRE 139
LIDG+VKFE++G DR+++SVYP E
Sbjct: 62 LIDGVVKFERYGKDRQKVSVYPVE 85
>sp|B8HUY8|RL27_CYAP4 50S ribosomal protein L27 OS=Cyanothece sp. (strain PCC 7425 / ATCC
29141) GN=rpmA PE=3 SV=1
Length = 89
Score = 124 bits (312), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 56/82 (68%), Positives = 67/82 (81%)
Query: 56 AHKKGAGSTKNGRDSRGQRLGVKIFGDQVAKPGAIIVRQRGTKFHPGKNVGLGKDHTIFS 115
AHKKG GST+NGRDS QRLGVK +G +V + G I+VRQRGTKFHPG NVG G D T+F+
Sbjct: 2 AHKKGTGSTRNGRDSNAQRLGVKRYGGEVVRAGNILVRQRGTKFHPGNNVGRGNDDTLFA 61
Query: 116 LIDGLVKFEKFGPDRKQISVYP 137
IDG+V FE++G DRK+ISVYP
Sbjct: 62 TIDGVVTFERYGKDRKRISVYP 83
>sp|B0JQG5|RL27_MICAN 50S ribosomal protein L27 OS=Microcystis aeruginosa (strain
NIES-843) GN=rpmA PE=3 SV=1
Length = 89
Score = 123 bits (309), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 59/85 (69%), Positives = 68/85 (80%)
Query: 56 AHKKGAGSTKNGRDSRGQRLGVKIFGDQVAKPGAIIVRQRGTKFHPGKNVGLGKDHTIFS 115
AHKKG GST+NGRDSR QRLGVK +G QV K G I++RQRGTK HPGKNVG G D T+F+
Sbjct: 2 AHKKGTGSTRNGRDSRSQRLGVKRYGGQVVKAGNILIRQRGTKVHPGKNVGRGGDDTLFA 61
Query: 116 LIDGLVKFEKFGPDRKQISVYPREV 140
LIDG+VKFE R+Q+SVYP EV
Sbjct: 62 LIDGVVKFEYKDKSRRQVSVYPAEV 86
>sp|Q10ZG7|RL27_TRIEI 50S ribosomal protein L27 OS=Trichodesmium erythraeum (strain
IMS101) GN=rpmA PE=3 SV=1
Length = 95
Score = 122 bits (306), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 54/82 (65%), Positives = 68/82 (82%)
Query: 56 AHKKGAGSTKNGRDSRGQRLGVKIFGDQVAKPGAIIVRQRGTKFHPGKNVGLGKDHTIFS 115
AHKKG GST+NGRDS QRLGVK +G QV K G I+VRQRG+KFH G NVG+GKD+T+F+
Sbjct: 2 AHKKGTGSTRNGRDSNSQRLGVKRYGGQVVKAGNILVRQRGSKFHAGNNVGVGKDYTLFA 61
Query: 116 LIDGLVKFEKFGPDRKQISVYP 137
L++G+V FE+ G RK++SVYP
Sbjct: 62 LVEGMVTFERKGKSRKKVSVYP 83
>sp|B5E957|RL27_GEOBB 50S ribosomal protein L27 OS=Geobacter bemidjiensis (strain Bem /
ATCC BAA-1014 / DSM 16622) GN=rpmA PE=3 SV=1
Length = 85
Score = 122 bits (306), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 56/82 (68%), Positives = 67/82 (81%)
Query: 56 AHKKGAGSTKNGRDSRGQRLGVKIFGDQVAKPGAIIVRQRGTKFHPGKNVGLGKDHTIFS 115
AHKKG GS++NGRDS GQRLG K FG + K G II RQ GTK HPG NVGLGKD+T+F+
Sbjct: 2 AHKKGVGSSRNGRDSDGQRLGCKKFGGEAVKAGNIIYRQHGTKIHPGNNVGLGKDYTLFA 61
Query: 116 LIDGLVKFEKFGPDRKQISVYP 137
LI+G+VKFE+ G DRK++SVYP
Sbjct: 62 LIEGVVKFERMGKDRKKVSVYP 83
>sp|C6E8U2|RL27_GEOSM 50S ribosomal protein L27 OS=Geobacter sp. (strain M21) GN=rpmA
PE=3 SV=1
Length = 85
Score = 122 bits (305), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 56/82 (68%), Positives = 67/82 (81%)
Query: 56 AHKKGAGSTKNGRDSRGQRLGVKIFGDQVAKPGAIIVRQRGTKFHPGKNVGLGKDHTIFS 115
AHKKG GS++NGRDS GQRLG K FG + K G II RQ GTK HPG NVGLGKD+T+F+
Sbjct: 2 AHKKGVGSSRNGRDSDGQRLGCKKFGGEAVKAGNIIYRQHGTKIHPGNNVGLGKDYTLFA 61
Query: 116 LIDGLVKFEKFGPDRKQISVYP 137
LI+G+VKFE+ G DRK++SVYP
Sbjct: 62 LIEGVVKFERMGRDRKKVSVYP 83
>sp|B3E330|RL27_GEOLS 50S ribosomal protein L27 OS=Geobacter lovleyi (strain ATCC
BAA-1151 / DSM 17278 / SZ) GN=rpmA PE=3 SV=1
Length = 84
Score = 121 bits (304), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 55/82 (67%), Positives = 68/82 (82%)
Query: 56 AHKKGAGSTKNGRDSRGQRLGVKIFGDQVAKPGAIIVRQRGTKFHPGKNVGLGKDHTIFS 115
AHKKG GS++NGRDS GQRLG K FG ++ K G II RQRGT+ HPG NVG GKD+T+F+
Sbjct: 2 AHKKGVGSSRNGRDSDGQRLGCKKFGGELVKAGNIIYRQRGTQIHPGNNVGCGKDYTLFA 61
Query: 116 LIDGLVKFEKFGPDRKQISVYP 137
LI+G+VKFE+ G DRK++SVYP
Sbjct: 62 LIEGVVKFERLGRDRKKVSVYP 83
>sp|A5GD28|RL27_GEOUR 50S ribosomal protein L27 OS=Geobacter uraniireducens (strain Rf4)
GN=rpmA PE=3 SV=1
Length = 85
Score = 121 bits (303), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 56/82 (68%), Positives = 67/82 (81%)
Query: 56 AHKKGAGSTKNGRDSRGQRLGVKIFGDQVAKPGAIIVRQRGTKFHPGKNVGLGKDHTIFS 115
AHKKG GST+NGRDS GQRLG K FG + K G II RQ GTK HPG NVGLG+D+T+F+
Sbjct: 2 AHKKGVGSTRNGRDSDGQRLGCKKFGGEHVKAGNIIYRQHGTKIHPGNNVGLGRDYTLFA 61
Query: 116 LIDGLVKFEKFGPDRKQISVYP 137
LI+G+VKFE+ G DRK++SVYP
Sbjct: 62 LIEGVVKFERMGRDRKKVSVYP 83
>sp|Q747N0|RL27_GEOSL 50S ribosomal protein L27 OS=Geobacter sulfurreducens (strain ATCC
51573 / DSM 12127 / PCA) GN=rpmA PE=3 SV=1
Length = 85
Score = 120 bits (302), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 55/82 (67%), Positives = 66/82 (80%)
Query: 56 AHKKGAGSTKNGRDSRGQRLGVKIFGDQVAKPGAIIVRQRGTKFHPGKNVGLGKDHTIFS 115
AHKKG GST+NGRDS +RLG K FG + K G II RQRGT+ HPG NVG GKD+T+F+
Sbjct: 2 AHKKGVGSTRNGRDSESKRLGCKKFGGETVKAGNIIYRQRGTQIHPGTNVGCGKDYTLFA 61
Query: 116 LIDGLVKFEKFGPDRKQISVYP 137
LIDG+VKFE+ G DRK++SVYP
Sbjct: 62 LIDGVVKFERLGRDRKKVSVYP 83
>sp|B2IV09|RL27_NOSP7 50S ribosomal protein L27 OS=Nostoc punctiforme (strain ATCC 29133
/ PCC 73102) GN=rpmA PE=3 SV=1
Length = 98
Score = 120 bits (302), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 55/81 (67%), Positives = 66/81 (81%)
Query: 56 AHKKGAGSTKNGRDSRGQRLGVKIFGDQVAKPGAIIVRQRGTKFHPGKNVGLGKDHTIFS 115
AHKKG GST+NGRDS QRLGVK +G QV + G I+VRQRGTKFHPG NVG+G D T+F+
Sbjct: 2 AHKKGTGSTRNGRDSNAQRLGVKRYGGQVVRAGNILVRQRGTKFHPGNNVGIGSDDTLFA 61
Query: 116 LIDGLVKFEKFGPDRKQISVY 136
LIDG+V FE+ G RK++SVY
Sbjct: 62 LIDGVVMFERKGKTRKKVSVY 82
>sp|B9M3W2|RL27_GEOSF 50S ribosomal protein L27 OS=Geobacter sp. (strain FRC-32) GN=rpmA
PE=3 SV=1
Length = 85
Score = 120 bits (302), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 56/82 (68%), Positives = 67/82 (81%)
Query: 56 AHKKGAGSTKNGRDSRGQRLGVKIFGDQVAKPGAIIVRQRGTKFHPGKNVGLGKDHTIFS 115
AHKKG GS++NGRDS GQRLG K FG + K G II RQ GTK HPG NVGLGKD+T+F+
Sbjct: 2 AHKKGVGSSRNGRDSDGQRLGCKKFGGEHVKAGNIIYRQHGTKIHPGNNVGLGKDYTLFA 61
Query: 116 LIDGLVKFEKFGPDRKQISVYP 137
LI+G+VKFE+ G DRK++SVYP
Sbjct: 62 LIEGVVKFERLGRDRKKVSVYP 83
>sp|Q7MA29|RL27_WOLSU 50S ribosomal protein L27 OS=Wolinella succinogenes (strain ATCC
29543 / DSM 1740 / LMG 7466 / NCTC 11488 / FDC 602W)
GN=rpmA PE=3 SV=1
Length = 85
Score = 119 bits (298), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 54/82 (65%), Positives = 67/82 (81%)
Query: 56 AHKKGAGSTKNGRDSRGQRLGVKIFGDQVAKPGAIIVRQRGTKFHPGKNVGLGKDHTIFS 115
AHKKG GST+N RDS G+RLGVK FG + + G II+RQRGTK HPG NVG+G DHTIF+
Sbjct: 2 AHKKGQGSTQNNRDSAGRRLGVKKFGGEFVRAGNIIIRQRGTKVHPGSNVGMGTDHTIFA 61
Query: 116 LIDGLVKFEKFGPDRKQISVYP 137
LIDG+VKFE+ +RK++S+YP
Sbjct: 62 LIDGIVKFERKDKERKKVSIYP 83
>sp|Q39QR5|RL27_GEOMG 50S ribosomal protein L27 OS=Geobacter metallireducens (strain
GS-15 / ATCC 53774 / DSM 7210) GN=rpmA PE=3 SV=1
Length = 85
Score = 119 bits (297), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 54/82 (65%), Positives = 66/82 (80%)
Query: 56 AHKKGAGSTKNGRDSRGQRLGVKIFGDQVAKPGAIIVRQRGTKFHPGKNVGLGKDHTIFS 115
AHKKG GST+NGRDS +RLG K +G + K G II RQRGT+ HPG NVG GKD+T+F+
Sbjct: 2 AHKKGVGSTRNGRDSESKRLGCKKYGGENVKAGNIIYRQRGTQIHPGTNVGCGKDYTLFA 61
Query: 116 LIDGLVKFEKFGPDRKQISVYP 137
LIDG+VKFE+ G DRK++SVYP
Sbjct: 62 LIDGVVKFERLGRDRKKVSVYP 83
>sp|A1AKW2|RL27_PELPD 50S ribosomal protein L27 OS=Pelobacter propionicus (strain DSM
2379) GN=rpmA PE=3 SV=1
Length = 84
Score = 119 bits (297), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 53/82 (64%), Positives = 66/82 (80%)
Query: 56 AHKKGAGSTKNGRDSRGQRLGVKIFGDQVAKPGAIIVRQRGTKFHPGKNVGLGKDHTIFS 115
AHKK GS++NGRDS+GQRLG K FG + K G II RQRGT+ HPG NVG GKD+T+F+
Sbjct: 2 AHKKAGGSSRNGRDSKGQRLGCKKFGGETVKAGNIIYRQRGTQIHPGNNVGCGKDYTLFA 61
Query: 116 LIDGLVKFEKFGPDRKQISVYP 137
LI+G+V FE+ G DRK++SVYP
Sbjct: 62 LIEGIVTFERMGRDRKKVSVYP 83
>sp|Q8Z0F1|RL27_NOSS1 50S ribosomal protein L27 OS=Nostoc sp. (strain PCC 7120 / UTEX
2576) GN=rpmA PE=3 SV=1
Length = 92
Score = 119 bits (297), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 55/82 (67%), Positives = 65/82 (79%)
Query: 56 AHKKGAGSTKNGRDSRGQRLGVKIFGDQVAKPGAIIVRQRGTKFHPGKNVGLGKDHTIFS 115
AHKKG GST+NGRDS QRLGVK FG Q G I+VRQRGTKFH G NVG+GKD T+F+
Sbjct: 2 AHKKGTGSTRNGRDSNAQRLGVKRFGGQAVIAGNILVRQRGTKFHAGNNVGIGKDDTLFA 61
Query: 116 LIDGLVKFEKFGPDRKQISVYP 137
L+DG+V FE+ G RK++SVYP
Sbjct: 62 LVDGVVTFERKGKSRKKVSVYP 83
>sp|Q3MCZ8|RL27_ANAVT 50S ribosomal protein L27 OS=Anabaena variabilis (strain ATCC 29413
/ PCC 7937) GN=rpmA PE=3 SV=1
Length = 93
Score = 118 bits (296), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 55/82 (67%), Positives = 65/82 (79%)
Query: 56 AHKKGAGSTKNGRDSRGQRLGVKIFGDQVAKPGAIIVRQRGTKFHPGKNVGLGKDHTIFS 115
AHKKG GST+NGRDS QRLGVK FG Q G I+VRQRGTKFH G NVG+GKD T+F+
Sbjct: 2 AHKKGTGSTRNGRDSNAQRLGVKRFGGQAVIAGNILVRQRGTKFHAGNNVGIGKDDTLFA 61
Query: 116 LIDGLVKFEKFGPDRKQISVYP 137
L+DG+V FE+ G RK++SVYP
Sbjct: 62 LVDGVVTFERKGKSRKKVSVYP 83
>sp|B9L606|RL27_NAUPA 50S ribosomal protein L27 OS=Nautilia profundicola (strain ATCC
BAA-1463 / DSM 18972 / AmH) GN=rpmA PE=3 SV=1
Length = 87
Score = 118 bits (296), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 57/84 (67%), Positives = 66/84 (78%)
Query: 56 AHKKGAGSTKNGRDSRGQRLGVKIFGDQVAKPGAIIVRQRGTKFHPGKNVGLGKDHTIFS 115
AHKKG GST+N RDS G+RLGVK FG + + G II+RQRGTK HPG NVGLGKDHTI++
Sbjct: 2 AHKKGQGSTQNNRDSAGRRLGVKKFGGEFVRAGNIIIRQRGTKVHPGNNVGLGKDHTIYA 61
Query: 116 LIDGLVKFEKFGPDRKQISVYPRE 139
LIDG VKFE RK++SVYP E
Sbjct: 62 LIDGYVKFEIKDKQRKKVSVYPIE 85
>sp|A7I2Z9|RL27_CAMHC 50S ribosomal protein L27 OS=Campylobacter hominis (strain ATCC
BAA-381 / LMG 19568 / NCTC 13146 / CH001A) GN=rpmA PE=3
SV=1
Length = 85
Score = 118 bits (296), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 55/82 (67%), Positives = 65/82 (79%)
Query: 56 AHKKGAGSTKNGRDSRGQRLGVKIFGDQVAKPGAIIVRQRGTKFHPGKNVGLGKDHTIFS 115
AHKKG GST+N RDS G+RLGVK FG + + G II+RQRGT H G NVG+G DHTIF+
Sbjct: 2 AHKKGQGSTQNNRDSIGRRLGVKKFGGEFVRAGNIIIRQRGTATHAGNNVGIGTDHTIFA 61
Query: 116 LIDGLVKFEKFGPDRKQISVYP 137
LIDG+VKFE+F RKQ+SVYP
Sbjct: 62 LIDGVVKFERFDKTRKQVSVYP 83
>sp|Q7VK83|RL27_HELHP 50S ribosomal protein L27 OS=Helicobacter hepaticus (strain ATCC
51449 / 3B1) GN=rpmA PE=3 SV=1
Length = 85
Score = 118 bits (295), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 56/82 (68%), Positives = 67/82 (81%)
Query: 56 AHKKGAGSTKNGRDSRGQRLGVKIFGDQVAKPGAIIVRQRGTKFHPGKNVGLGKDHTIFS 115
AHKKG GST+N RDS G+RLGVK FG Q + G IIVRQRGTK HPG NVGLGKDHTI++
Sbjct: 2 AHKKGQGSTQNNRDSAGRRLGVKRFGSQFVRAGNIIVRQRGTKVHPGDNVGLGKDHTIYA 61
Query: 116 LIDGLVKFEKFGPDRKQISVYP 137
LIDG+VKF++ +RK++SV P
Sbjct: 62 LIDGVVKFQQKDKNRKKVSVIP 83
>sp|Q7NME2|RL27_GLOVI 50S ribosomal protein L27 OS=Gloeobacter violaceus (strain PCC
7421) GN=rpmA PE=3 SV=1
Length = 95
Score = 117 bits (294), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 53/82 (64%), Positives = 65/82 (79%)
Query: 56 AHKKGAGSTKNGRDSRGQRLGVKIFGDQVAKPGAIIVRQRGTKFHPGKNVGLGKDHTIFS 115
AHKKG GST+NGRDS QRLGVK +G + K G I++RQRGTK HPG NVG G D T+F+
Sbjct: 2 AHKKGTGSTRNGRDSNAQRLGVKRYGGERVKAGNILIRQRGTKIHPGANVGRGSDDTLFA 61
Query: 116 LIDGLVKFEKFGPDRKQISVYP 137
LI+G+V FE+ G DRK++SVYP
Sbjct: 62 LIEGIVTFERLGRDRKKVSVYP 83
>sp|Q89ZR3|RL27_BACTN 50S ribosomal protein L27 OS=Bacteroides thetaiotaomicron (strain
ATCC 29148 / DSM 2079 / NCTC 10582 / E50 / VPI-5482)
GN=rpmA PE=3 SV=1
Length = 89
Score = 117 bits (294), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 52/84 (61%), Positives = 68/84 (80%)
Query: 56 AHKKGAGSTKNGRDSRGQRLGVKIFGDQVAKPGAIIVRQRGTKFHPGKNVGLGKDHTIFS 115
AHKKG GS+KNGR+S +RLGVKIFG + K G II+RQRGT+FHPG+N+G+GKDHT+F+
Sbjct: 2 AHKKGVGSSKNGRESHSKRLGVKIFGGEACKAGNIIIRQRGTEFHPGENIGMGKDHTLFA 61
Query: 116 LIDGLVKFEKFGPDRKQISVYPRE 139
L+DG VKF+ DR+ +S+ P E
Sbjct: 62 LVDGTVKFKVGREDRRYVSIIPAE 85
>sp|A0RR38|RL27_CAMFF 50S ribosomal protein L27 OS=Campylobacter fetus subsp. fetus
(strain 82-40) GN=rpmA PE=3 SV=1
Length = 85
Score = 117 bits (293), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 54/82 (65%), Positives = 66/82 (80%)
Query: 56 AHKKGAGSTKNGRDSRGQRLGVKIFGDQVAKPGAIIVRQRGTKFHPGKNVGLGKDHTIFS 115
AHKKG GST+N RDS G+RLGVK FG + + G II+RQRGT HPG NVG+G+DHTIF+
Sbjct: 2 AHKKGQGSTQNNRDSIGRRLGVKKFGGEFVRAGNIIIRQRGTATHPGNNVGIGRDHTIFA 61
Query: 116 LIDGLVKFEKFGPDRKQISVYP 137
L+DG VKFE+ DRK++SVYP
Sbjct: 62 LVDGFVKFERKDKDRKKVSVYP 83
>sp|A8EV84|RL27_ARCB4 50S ribosomal protein L27 OS=Arcobacter butzleri (strain RM4018)
GN=rpmA PE=3 SV=1
Length = 85
Score = 117 bits (293), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 53/82 (64%), Positives = 68/82 (82%)
Query: 56 AHKKGAGSTKNGRDSRGQRLGVKIFGDQVAKPGAIIVRQRGTKFHPGKNVGLGKDHTIFS 115
AHKKG GST+N RDS G+RLGVK +G +V + G II+RQRGT+ H G+NVG+GKDHTI+S
Sbjct: 2 AHKKGQGSTQNNRDSAGRRLGVKKYGGEVVRAGNIIIRQRGTRVHLGQNVGMGKDHTIYS 61
Query: 116 LIDGLVKFEKFGPDRKQISVYP 137
LIDG+VKFE+ +RK++SVY
Sbjct: 62 LIDGVVKFEQKDKNRKKVSVYA 83
>sp|A7ZC11|RL27_CAMC1 50S ribosomal protein L27 OS=Campylobacter concisus (strain 13826)
GN=rpmA PE=3 SV=1
Length = 85
Score = 117 bits (293), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 54/82 (65%), Positives = 65/82 (79%)
Query: 56 AHKKGAGSTKNGRDSRGQRLGVKIFGDQVAKPGAIIVRQRGTKFHPGKNVGLGKDHTIFS 115
AHKKG GST+N RDS G+RLGVK FG + + G II+RQRGT H G NVGLGKDHTIF+
Sbjct: 2 AHKKGQGSTQNNRDSIGRRLGVKKFGGEFVRAGNIIIRQRGTATHAGNNVGLGKDHTIFA 61
Query: 116 LIDGLVKFEKFGPDRKQISVYP 137
L+DG VKFE+ +RK++SVYP
Sbjct: 62 LVDGFVKFERLDKNRKKVSVYP 83
>sp|Q5N598|RL27_SYNP6 50S ribosomal protein L27 OS=Synechococcus sp. (strain ATCC 27144 /
PCC 6301 / SAUG 1402/1) GN=rpmA PE=3 SV=1
Length = 88
Score = 117 bits (293), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 56/82 (68%), Positives = 66/82 (80%)
Query: 56 AHKKGAGSTKNGRDSRGQRLGVKIFGDQVAKPGAIIVRQRGTKFHPGKNVGLGKDHTIFS 115
AHKKG GST+NGRDS QRLGVK FG +V + G+IIVRQRGTKFHPG NVG G D T+F+
Sbjct: 2 AHKKGTGSTRNGRDSNAQRLGVKKFGGEVVRSGSIIVRQRGTKFHPGVNVGRGGDDTLFA 61
Query: 116 LIDGLVKFEKFGPDRKQISVYP 137
LIDG+V FE+ G K++SVYP
Sbjct: 62 LIDGVVTFERKGKGGKKVSVYP 83
>sp|Q9Z3H6|RL27_SYNE7 50S ribosomal protein L27 OS=Synechococcus elongatus (strain PCC
7942) GN=rpmA PE=3 SV=1
Length = 88
Score = 117 bits (293), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 56/82 (68%), Positives = 66/82 (80%)
Query: 56 AHKKGAGSTKNGRDSRGQRLGVKIFGDQVAKPGAIIVRQRGTKFHPGKNVGLGKDHTIFS 115
AHKKG GST+NGRDS QRLGVK FG +V + G+IIVRQRGTKFHPG NVG G D T+F+
Sbjct: 2 AHKKGTGSTRNGRDSNAQRLGVKKFGGEVVRSGSIIVRQRGTKFHPGVNVGRGGDDTLFA 61
Query: 116 LIDGLVKFEKFGPDRKQISVYP 137
LIDG+V FE+ G K++SVYP
Sbjct: 62 LIDGVVTFERKGKGGKKVSVYP 83
>sp|B1XPD9|RL27_SYNP2 50S ribosomal protein L27 OS=Synechococcus sp. (strain ATCC 27264 /
PCC 7002 / PR-6) GN=rpmA PE=3 SV=1
Length = 88
Score = 117 bits (292), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 53/82 (64%), Positives = 65/82 (79%)
Query: 56 AHKKGAGSTKNGRDSRGQRLGVKIFGDQVAKPGAIIVRQRGTKFHPGKNVGLGKDHTIFS 115
AHKKG GST+NGRDSR QRLGVK +G Q G+I+VRQRGTK HPG NVG G D T+F+
Sbjct: 2 AHKKGTGSTRNGRDSRAQRLGVKRYGGQTVTTGSILVRQRGTKVHPGNNVGRGGDDTLFA 61
Query: 116 LIDGLVKFEKFGPDRKQISVYP 137
L+DG+VKFE + R+++SVYP
Sbjct: 62 LVDGIVKFEHYKRGRRKVSVYP 83
>sp|Q64XL7|RL27_BACFR 50S ribosomal protein L27 OS=Bacteroides fragilis (strain YCH46)
GN=rpmA PE=3 SV=1
Length = 89
Score = 117 bits (292), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 52/84 (61%), Positives = 68/84 (80%)
Query: 56 AHKKGAGSTKNGRDSRGQRLGVKIFGDQVAKPGAIIVRQRGTKFHPGKNVGLGKDHTIFS 115
AHKKG GS+KNGR+S+ +RLGVKIFG + K G IIVRQRGT+FHPG+N+G+GKDHT+F+
Sbjct: 2 AHKKGVGSSKNGRESQSKRLGVKIFGGEACKAGNIIVRQRGTEFHPGENIGMGKDHTLFA 61
Query: 116 LIDGLVKFEKFGPDRKQISVYPRE 139
L+DG V F+ DR+ +S+ P E
Sbjct: 62 LVDGTVNFKVGREDRRYVSIIPAE 85
>sp|Q5LGR6|RL27_BACFN 50S ribosomal protein L27 OS=Bacteroides fragilis (strain ATCC
25285 / NCTC 9343) GN=rpmA PE=3 SV=1
Length = 89
Score = 117 bits (292), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 52/84 (61%), Positives = 68/84 (80%)
Query: 56 AHKKGAGSTKNGRDSRGQRLGVKIFGDQVAKPGAIIVRQRGTKFHPGKNVGLGKDHTIFS 115
AHKKG GS+KNGR+S+ +RLGVKIFG + K G IIVRQRGT+FHPG+N+G+GKDHT+F+
Sbjct: 2 AHKKGVGSSKNGRESQSKRLGVKIFGGEACKAGNIIVRQRGTEFHPGENIGMGKDHTLFA 61
Query: 116 LIDGLVKFEKFGPDRKQISVYPRE 139
L+DG V F+ DR+ +S+ P E
Sbjct: 62 LVDGTVNFKVGREDRRYVSIIPAE 85
>sp|Q5HX71|RL27_CAMJR 50S ribosomal protein L27 OS=Campylobacter jejuni (strain RM1221)
GN=rpmA PE=3 SV=1
Length = 84
Score = 117 bits (292), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 55/82 (67%), Positives = 65/82 (79%)
Query: 56 AHKKGAGSTKNGRDSRGQRLGVKIFGDQVAKPGAIIVRQRGTKFHPGKNVGLGKDHTIFS 115
AHKKG GST+N RDS G+RLGVK FG + + G II+RQRGT H G NVG+GKDHTIF+
Sbjct: 2 AHKKGQGSTQNNRDSIGRRLGVKKFGGEFVRAGNIIIRQRGTATHAGNNVGMGKDHTIFA 61
Query: 116 LIDGLVKFEKFGPDRKQISVYP 137
LIDG VKFE+ DRK++SVYP
Sbjct: 62 LIDGFVKFERKDKDRKKVSVYP 83
>sp|A1VXH8|RL27_CAMJJ 50S ribosomal protein L27 OS=Campylobacter jejuni subsp. jejuni
serotype O:23/36 (strain 81-176) GN=rpmA PE=3 SV=1
Length = 84
Score = 117 bits (292), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 55/82 (67%), Positives = 65/82 (79%)
Query: 56 AHKKGAGSTKNGRDSRGQRLGVKIFGDQVAKPGAIIVRQRGTKFHPGKNVGLGKDHTIFS 115
AHKKG GST+N RDS G+RLGVK FG + + G II+RQRGT H G NVG+GKDHTIF+
Sbjct: 2 AHKKGQGSTQNNRDSIGRRLGVKKFGGEFVRAGNIIIRQRGTATHAGNNVGMGKDHTIFA 61
Query: 116 LIDGLVKFEKFGPDRKQISVYP 137
LIDG VKFE+ DRK++SVYP
Sbjct: 62 LIDGFVKFERKDKDRKKVSVYP 83
>sp|Q9PJ31|RL27_CAMJE 50S ribosomal protein L27 OS=Campylobacter jejuni subsp. jejuni
serotype O:2 (strain NCTC 11168) GN=rpmA PE=3 SV=1
Length = 84
Score = 117 bits (292), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 55/82 (67%), Positives = 65/82 (79%)
Query: 56 AHKKGAGSTKNGRDSRGQRLGVKIFGDQVAKPGAIIVRQRGTKFHPGKNVGLGKDHTIFS 115
AHKKG GST+N RDS G+RLGVK FG + + G II+RQRGT H G NVG+GKDHTIF+
Sbjct: 2 AHKKGQGSTQNNRDSIGRRLGVKKFGGEFVRAGNIIIRQRGTATHAGNNVGMGKDHTIFA 61
Query: 116 LIDGLVKFEKFGPDRKQISVYP 137
LIDG VKFE+ DRK++SVYP
Sbjct: 62 LIDGFVKFERKDKDRKKVSVYP 83
>sp|A7H1G9|RL27_CAMJD 50S ribosomal protein L27 OS=Campylobacter jejuni subsp. doylei
(strain ATCC BAA-1458 / RM4099 / 269.97) GN=rpmA PE=3
SV=1
Length = 84
Score = 117 bits (292), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 55/82 (67%), Positives = 65/82 (79%)
Query: 56 AHKKGAGSTKNGRDSRGQRLGVKIFGDQVAKPGAIIVRQRGTKFHPGKNVGLGKDHTIFS 115
AHKKG GST+N RDS G+RLGVK FG + + G II+RQRGT H G NVG+GKDHTIF+
Sbjct: 2 AHKKGQGSTQNNRDSIGRRLGVKKFGGEFVRAGNIIIRQRGTATHAGNNVGMGKDHTIFA 61
Query: 116 LIDGLVKFEKFGPDRKQISVYP 137
LIDG VKFE+ DRK++SVYP
Sbjct: 62 LIDGFVKFERKDKDRKKVSVYP 83
>sp|A8FJQ0|RL27_CAMJ8 50S ribosomal protein L27 OS=Campylobacter jejuni subsp. jejuni
serotype O:6 (strain 81116 / NCTC 11828) GN=rpmA PE=3
SV=1
Length = 84
Score = 117 bits (292), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 55/82 (67%), Positives = 65/82 (79%)
Query: 56 AHKKGAGSTKNGRDSRGQRLGVKIFGDQVAKPGAIIVRQRGTKFHPGKNVGLGKDHTIFS 115
AHKKG GST+N RDS G+RLGVK FG + + G II+RQRGT H G NVG+GKDHTIF+
Sbjct: 2 AHKKGQGSTQNNRDSIGRRLGVKKFGGEFVRAGNIIIRQRGTATHAGNNVGMGKDHTIFA 61
Query: 116 LIDGLVKFEKFGPDRKQISVYP 137
LIDG VKFE+ DRK++SVYP
Sbjct: 62 LIDGFVKFERKDKDRKKVSVYP 83
>sp|Q8DMF2|RL27_THEEB 50S ribosomal protein L27 OS=Thermosynechococcus elongatus (strain
BP-1) GN=rpmA PE=3 SV=1
Length = 86
Score = 117 bits (292), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 55/84 (65%), Positives = 66/84 (78%)
Query: 56 AHKKGAGSTKNGRDSRGQRLGVKIFGDQVAKPGAIIVRQRGTKFHPGKNVGLGKDHTIFS 115
AHKKG GST+NGRDS QRLGVK FG +V K G I+VRQRGTKFHPG NV G D T+F+
Sbjct: 2 AHKKGTGSTRNGRDSNAQRLGVKRFGGEVVKAGYILVRQRGTKFHPGVNVARGGDDTLFA 61
Query: 116 LIDGLVKFEKFGPDRKQISVYPRE 139
I G+V FE++G +RK++SVYP E
Sbjct: 62 TIAGVVTFERYGKNRKRVSVYPLE 85
>sp|B0SRT6|RL27_LEPBP 50S ribosomal protein L27 OS=Leptospira biflexa serovar Patoc
(strain Patoc 1 / ATCC 23582 / Paris) GN=rpmA PE=3 SV=1
Length = 85
Score = 116 bits (291), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 53/83 (63%), Positives = 68/83 (81%)
Query: 56 AHKKGAGSTKNGRDSRGQRLGVKIFGDQVAKPGAIIVRQRGTKFHPGKNVGLGKDHTIFS 115
A KKG GSTKNGRDS +RLGVK++G Q A G IIVRQRGT++ PGKNVG+G+DHT+++
Sbjct: 2 ATKKGGGSTKNGRDSVSKRLGVKVYGGQQAIAGNIIVRQRGTEYKPGKNVGIGRDHTLYA 61
Query: 116 LIDGLVKFEKFGPDRKQISVYPR 138
L+DG+V FE +R+QISVYP+
Sbjct: 62 LVDGIVTFEHVTKERQQISVYPK 84
>sp|B0S9A2|RL27_LEPBA 50S ribosomal protein L27 OS=Leptospira biflexa serovar Patoc
(strain Patoc 1 / Ames) GN=rpmA PE=3 SV=1
Length = 85
Score = 116 bits (291), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 53/83 (63%), Positives = 68/83 (81%)
Query: 56 AHKKGAGSTKNGRDSRGQRLGVKIFGDQVAKPGAIIVRQRGTKFHPGKNVGLGKDHTIFS 115
A KKG GSTKNGRDS +RLGVK++G Q A G IIVRQRGT++ PGKNVG+G+DHT+++
Sbjct: 2 ATKKGGGSTKNGRDSVSKRLGVKVYGGQQAIAGNIIVRQRGTEYKPGKNVGIGRDHTLYA 61
Query: 116 LIDGLVKFEKFGPDRKQISVYPR 138
L+DG+V FE +R+QISVYP+
Sbjct: 62 LVDGIVTFEHVTKERQQISVYPK 84
>sp|B5YJ66|RL27_THEYD 50S ribosomal protein L27 OS=Thermodesulfovibrio yellowstonii
(strain ATCC 51303 / DSM 11347 / YP87) GN=rpmA PE=3 SV=1
Length = 89
Score = 116 bits (290), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 54/82 (65%), Positives = 67/82 (81%)
Query: 56 AHKKGAGSTKNGRDSRGQRLGVKIFGDQVAKPGAIIVRQRGTKFHPGKNVGLGKDHTIFS 115
AHKKG GS++NGRDS+ +RLGVK FG Q K G I+VRQRGTKFHPG NVG+G D+T+F+
Sbjct: 2 AHKKGVGSSRNGRDSQAKRLGVKRFGGQFVKAGNILVRQRGTKFHPGANVGVGSDYTLFA 61
Query: 116 LIDGLVKFEKFGPDRKQISVYP 137
LIDG+VKFE+ R ++SVYP
Sbjct: 62 LIDGIVKFERKDKQRLKVSVYP 83
>sp|B1WWL8|RL27_CYAA5 50S ribosomal protein L27 OS=Cyanothece sp. (strain ATCC 51142)
GN=rpmA PE=3 SV=1
Length = 87
Score = 116 bits (290), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 54/82 (65%), Positives = 64/82 (78%)
Query: 56 AHKKGAGSTKNGRDSRGQRLGVKIFGDQVAKPGAIIVRQRGTKFHPGKNVGLGKDHTIFS 115
AHKKG GST+NGRDSR QRLGVK +G QV K G I++RQRGTK HPG NVG G D T+F+
Sbjct: 2 AHKKGTGSTRNGRDSRSQRLGVKRYGGQVVKAGNILIRQRGTKVHPGNNVGRGNDDTLFA 61
Query: 116 LIDGLVKFEKFGPDRKQISVYP 137
LIDG+V FE R+++SVYP
Sbjct: 62 LIDGIVTFEYKTKSRRKVSVYP 83
>sp|P82190|RK27_SPIOL 50S ribosomal protein L27, chloroplastic (Fragment) OS=Spinacia
oleracea GN=RPL27 PE=1 SV=1
Length = 58
Score = 116 bits (290), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 54/58 (93%), Positives = 58/58 (100%)
Query: 56 AHKKGAGSTKNGRDSRGQRLGVKIFGDQVAKPGAIIVRQRGTKFHPGKNVGLGKDHTI 113
AHKKGAGSTKNGRDS+GQRLGVKI+GDQVAKPGAII+RQRGTKFHPGKNVG+GKDHTI
Sbjct: 1 AHKKGAGSTKNGRDSKGQRLGVKIYGDQVAKPGAIIIRQRGTKFHPGKNVGIGKDHTI 58
>sp|A7H030|RL27_CAMC5 50S ribosomal protein L27 OS=Campylobacter curvus (strain 525.92)
GN=rpmA PE=3 SV=1
Length = 85
Score = 115 bits (289), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 55/82 (67%), Positives = 65/82 (79%)
Query: 56 AHKKGAGSTKNGRDSRGQRLGVKIFGDQVAKPGAIIVRQRGTKFHPGKNVGLGKDHTIFS 115
AHKKG GST+N RDS G+RLGVK FG + + G II+RQRGT H G NVGLGKDHTIF+
Sbjct: 2 AHKKGQGSTQNNRDSIGRRLGVKKFGGEFVRAGNIIIRQRGTATHAGSNVGLGKDHTIFA 61
Query: 116 LIDGLVKFEKFGPDRKQISVYP 137
LIDG VKFE+ +RK++SVYP
Sbjct: 62 LIDGFVKFERKDKNRKKVSVYP 83
>sp|B0C3C2|RL27_ACAM1 50S ribosomal protein L27 OS=Acaryochloris marina (strain MBIC
11017) GN=rpmA PE=3 SV=1
Length = 84
Score = 115 bits (289), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 53/82 (64%), Positives = 64/82 (78%)
Query: 56 AHKKGAGSTKNGRDSRGQRLGVKIFGDQVAKPGAIIVRQRGTKFHPGKNVGLGKDHTIFS 115
AHKKG GST+NGRDS QRLGVK +G +V + G II+RQRGTK HPG NVG G D T+F+
Sbjct: 2 AHKKGTGSTRNGRDSNAQRLGVKRYGGEVVRAGNIIIRQRGTKVHPGNNVGRGSDDTLFA 61
Query: 116 LIDGLVKFEKFGPDRKQISVYP 137
IDG+V FE+ G RK++SVYP
Sbjct: 62 TIDGIVTFERKGKSRKKVSVYP 83
>sp|P74267|RL27_SYNY3 50S ribosomal protein L27 OS=Synechocystis sp. (strain PCC 6803 /
Kazusa) GN=rpmA PE=3 SV=1
Length = 87
Score = 115 bits (289), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 54/82 (65%), Positives = 64/82 (78%)
Query: 56 AHKKGAGSTKNGRDSRGQRLGVKIFGDQVAKPGAIIVRQRGTKFHPGKNVGLGKDHTIFS 115
AHKKG GST+NGRDS QRLGVK +G Q G+IIVRQRGT+ HPG NVG GKD T+F+
Sbjct: 2 AHKKGTGSTRNGRDSNAQRLGVKRYGGQTVTAGSIIVRQRGTQVHPGNNVGRGKDDTLFA 61
Query: 116 LIDGLVKFEKFGPDRKQISVYP 137
LIDG+VKFE R+++SVYP
Sbjct: 62 LIDGVVKFEHKTRSRRKVSVYP 83
>sp|Q2LR76|RL27_SYNAS 50S ribosomal protein L27 OS=Syntrophus aciditrophicus (strain SB)
GN=rpmA PE=3 SV=1
Length = 85
Score = 115 bits (288), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 52/82 (63%), Positives = 65/82 (79%)
Query: 56 AHKKGAGSTKNGRDSRGQRLGVKIFGDQVAKPGAIIVRQRGTKFHPGKNVGLGKDHTIFS 115
AHKKG GS++NGRDS QR GVK++G Q G+II+RQ GTK HPG NVG+GKD+T+FS
Sbjct: 2 AHKKGQGSSRNGRDSNAQRRGVKVYGGQSIHAGSIIIRQLGTKIHPGNNVGMGKDYTLFS 61
Query: 116 LIDGLVKFEKFGPDRKQISVYP 137
LIDG+VKFE+ RK++SVY
Sbjct: 62 LIDGVVKFERLDKKRKKVSVYA 83
>sp|B7KFE2|RL27_CYAP7 50S ribosomal protein L27 OS=Cyanothece sp. (strain PCC 7424)
GN=rpmA PE=3 SV=1
Length = 94
Score = 115 bits (288), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 55/82 (67%), Positives = 66/82 (80%)
Query: 56 AHKKGAGSTKNGRDSRGQRLGVKIFGDQVAKPGAIIVRQRGTKFHPGKNVGLGKDHTIFS 115
AHKKG GST+NGRDS+ +RLGVK +G QV + G I+VRQRGTKFHPG NVG G D T+F+
Sbjct: 2 AHKKGTGSTRNGRDSQSKRLGVKRYGGQVVRAGNILVRQRGTKFHPGNNVGRGSDDTLFA 61
Query: 116 LIDGLVKFEKFGPDRKQISVYP 137
LIDG+VKFE R++ISVYP
Sbjct: 62 LIDGVVKFEYKTRSRQKISVYP 83
>sp|Q8REI3|RL27_FUSNN 50S ribosomal protein L27 OS=Fusobacterium nucleatum subsp.
nucleatum (strain ATCC 25586 / CIP 101130 / JCM 8532 /
LMG 13131) GN=rpmA PE=3 SV=1
Length = 94
Score = 115 bits (288), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 53/84 (63%), Positives = 66/84 (78%)
Query: 56 AHKKGAGSTKNGRDSRGQRLGVKIFGDQVAKPGAIIVRQRGTKFHPGKNVGLGKDHTIFS 115
AHKKG GS KNGRDS + LGVK + +V K G IIVRQRGTK+H G N+G+GKDHT+F+
Sbjct: 11 AHKKGQGSVKNGRDSNPKYLGVKKYDGEVVKAGNIIVRQRGTKYHAGNNMGIGKDHTLFA 70
Query: 116 LIDGLVKFEKFGPDRKQISVYPRE 139
LIDG VKFE+ G ++KQIS+Y +
Sbjct: 71 LIDGYVKFERLGKNKKQISIYSEK 94
>sp|B9KER2|RL27_CAMLR 50S ribosomal protein L27 OS=Campylobacter lari (strain RM2100 /
D67 / ATCC BAA-1060) GN=rpmA PE=3 SV=1
Length = 84
Score = 115 bits (288), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 54/82 (65%), Positives = 65/82 (79%)
Query: 56 AHKKGAGSTKNGRDSRGQRLGVKIFGDQVAKPGAIIVRQRGTKFHPGKNVGLGKDHTIFS 115
AHKKG GST+N RDS G+RLGVK FG + + G II+RQRGT H G NVG+GKDHTIF+
Sbjct: 2 AHKKGQGSTQNNRDSIGRRLGVKKFGGEFVRAGNIIIRQRGTATHAGNNVGMGKDHTIFA 61
Query: 116 LIDGLVKFEKFGPDRKQISVYP 137
LIDG VKFE+ +RK++SVYP
Sbjct: 62 LIDGFVKFERKDKNRKKVSVYP 83
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.315 0.132 0.376
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 71,736,435
Number of Sequences: 539616
Number of extensions: 3106105
Number of successful extensions: 8530
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 810
Number of HSP's successfully gapped in prelim test: 47
Number of HSP's that attempted gapping in prelim test: 7696
Number of HSP's gapped (non-prelim): 868
length of query: 192
length of database: 191,569,459
effective HSP length: 111
effective length of query: 81
effective length of database: 131,672,083
effective search space: 10665438723
effective search space used: 10665438723
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 58 (26.9 bits)