Query 029509
Match_columns 192
No_of_seqs 131 out of 912
Neff 3.3
Searched_HMMs 46136
Date Fri Mar 29 14:03:01 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029509.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/029509hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4600 Mitochondrial ribosoma 100.0 7.6E-50 1.6E-54 322.9 10.2 140 13-167 1-142 (144)
2 COG0211 RpmA Ribosomal protein 100.0 1.8E-46 3.9E-51 282.5 8.7 86 55-140 1-86 (87)
3 CHL00121 rpl27 ribosomal prote 100.0 6.3E-45 1.4E-49 274.3 9.2 84 55-138 1-84 (86)
4 PRK05435 rpmA 50S ribosomal pr 100.0 1.4E-44 3E-49 270.5 9.2 82 55-136 1-82 (82)
5 PF01016 Ribosomal_L27: Riboso 100.0 3.7E-44 8.1E-49 267.4 7.8 81 56-136 1-81 (81)
6 TIGR00062 L27 ribosomal protei 100.0 7.2E-44 1.6E-48 267.1 8.8 82 55-136 1-83 (83)
7 PRK09521 exosome complex RNA-b 95.5 0.039 8.5E-07 45.5 6.0 59 81-145 4-62 (189)
8 PF14382 ECR1_N: Exosome compl 94.9 0.056 1.2E-06 35.5 4.1 38 84-124 1-38 (39)
9 COG1096 Predicted RNA-binding 92.4 0.44 9.5E-06 41.1 6.5 62 80-147 3-64 (188)
10 PRK04163 exosome complex RNA-b 91.4 0.6 1.3E-05 40.2 6.2 53 79-140 5-57 (235)
11 PF03961 DUF342: Protein of un 83.9 2.5 5.5E-05 39.1 5.8 37 97-138 143-181 (451)
12 PF01551 Peptidase_M23: Peptid 80.3 3.6 7.8E-05 29.5 4.3 39 98-136 1-40 (96)
13 COG1315 Uncharacterized conser 68.9 5.1 0.00011 39.5 3.4 37 97-139 219-256 (543)
14 PF13533 Biotin_lipoyl_2: Biot 60.7 7.7 0.00017 25.8 2.1 17 77-93 16-32 (50)
15 PRK14844 bifunctional DNA-dire 58.9 16 0.00034 42.4 5.2 63 77-139 2526-2601(2836)
16 COG1097 RRP4 RNA-binding prote 54.9 27 0.00059 31.3 5.1 53 79-139 5-57 (239)
17 cd06850 biotinyl_domain The bi 54.6 25 0.00055 22.6 3.8 39 77-125 13-51 (67)
18 TIGR02994 ectoine_eutE ectoine 51.6 20 0.00044 32.4 3.9 42 78-126 269-311 (325)
19 PRK09603 bifunctional DNA-dire 47.0 31 0.00068 40.2 5.2 63 77-139 2616-2692(2890)
20 COG1726 NqrA Na+-transporting 44.5 1.1E+02 0.0024 29.7 7.7 59 67-136 33-91 (447)
21 PRK05889 putative acetyl-CoA c 42.9 38 0.00082 23.5 3.4 40 75-124 14-53 (71)
22 PF13375 RnfC_N: RnfC Barrel s 41.6 32 0.00068 26.5 3.1 34 79-123 46-79 (101)
23 cd06253 M14_ASTE_ASPA_like_3 A 37.4 51 0.0011 29.2 4.2 41 79-126 244-284 (298)
24 cd06663 Biotinyl_lipoyl_domain 31.4 73 0.0016 21.5 3.3 40 75-124 17-56 (73)
25 cd06251 M14_ASTE_ASPA_like_1 A 28.5 73 0.0016 27.9 3.6 40 79-126 234-273 (287)
26 PRK14875 acetoin dehydrogenase 25.3 85 0.0019 26.6 3.3 43 71-123 16-58 (371)
27 PRK09774 fec operon regulator 23.8 1.9E+02 0.0041 25.7 5.4 39 84-126 169-207 (319)
28 PRK06549 acetyl-CoA carboxylas 23.4 1.1E+02 0.0024 24.6 3.5 44 70-123 68-111 (130)
29 PRK08225 acetyl-CoA carboxylas 21.4 1.5E+02 0.0032 20.2 3.4 38 76-123 14-51 (70)
30 cd06254 M14_ASTE_ASPA_like_4 A 20.3 1.6E+02 0.0034 25.8 4.1 42 77-126 236-277 (288)
No 1
>KOG4600 consensus Mitochondrial ribosomal protein MRP7 (L2) [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=7.6e-50 Score=322.95 Aligned_cols=140 Identities=54% Similarity=0.750 Sum_probs=125.8
Q ss_pred eeceeeeccCCccceeecCccccCCceeeecCCCCCCceeEEeeeccCCCcCCCCCCCCCcccceeeeCCeEeecCcEee
Q 029509 13 SFKGLSLSSSSSSSFLKGDFTVCPKSVTVSLPPTSPLPLTIESAHKKGAGSTKNGRDSRGQRLGVKIFGDQVAKPGAIIV 92 (192)
Q Consensus 13 ~f~glslss~~sssf~~g~~~~~~~~~~v~~~~~~~~~l~ir~A~KKggGSTkNGRdS~~KrLGvK~~~Gq~V~~G~IIV 92 (192)
+|+.|.|++ +|+++.|+.+.+ ..+.||+||||++|||||+|||+|+|||||+|+||+|+||+|||
T Consensus 1 ~~~~l~l~t--as~~~~~~ss~~-------------~~l~vR~AtKk~aGStKN~~dS~grrlGvKk~egq~V~~G~IIv 65 (144)
T KOG4600|consen 1 VVNALRLST--ASSSLDGSSSGL-------------SFLAVRWATKKGAGSTKNGRDSAGRRLGVKKYEGQSVIPGNIIV 65 (144)
T ss_pred Cccceecch--hhhhhcCCCCcc-------------eeeeeeeecccccCccccCCCCCcccccceecCCeeeecccEEE
Confidence 377888888 455666654433 23459999999999999999999999999999999999999999
Q ss_pred eccCCeEecCCCeeecccccEEeeeceEEEEEEe--CCCcEEEEEEeCCCCCCCCchhhhhhhhhhhhHHHHHHHhh
Q 029509 93 RQRGTKFHPGKNVGLGKDHTIFSLIDGLVKFEKF--GPDRKQISVYPREVQPENPNSYRARKREYFRLQREKKKARK 167 (192)
Q Consensus 93 RQRGtkfhPG~NVg~GrD~TLfAlv~G~V~F~k~--~~~r~~VsV~p~~~~~~~P~s~r~r~r~~~~~~re~~~a~~ 167 (192)
||||||||||+|||||||||||||++|+|+|++. .+.|++|+|+|....+.+|+.+++..|+.++++.+-++|+-
T Consensus 66 rQRgtkfHPG~nVGiGKDhtifaL~eG~Vrf~k~~~~~~Rk~i~V~~~~~~~l~~~~~k~~vr~~~k~~~~~~ka~~ 142 (144)
T KOG4600|consen 66 RQRGTKFHPGDNVGIGKDHTIFALEEGRVRFEKSKITPPRKWIGVDPRGGLPLPPPYYKATVRRVTKLPTGTKKAVA 142 (144)
T ss_pred EecccccCCCcccccCCcceEEEeeccEEEEEEccCCCCcceEEEeecCCccCCCccchhhhhhhcccccchhhhhc
Confidence 9999999999999999999999999999999986 56789999999999999999999999999999999888763
No 2
>COG0211 RpmA Ribosomal protein L27 [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.8e-46 Score=282.49 Aligned_cols=86 Identities=67% Similarity=1.067 Sum_probs=84.0
Q ss_pred eeeccCCCcCCCCCCCCCcccceeeeCCeEeecCcEeeeccCCeEecCCCeeecccccEEeeeceEEEEEEeCCCcEEEE
Q 029509 55 SAHKKGAGSTKNGRDSRGQRLGVKIFGDQVAKPGAIIVRQRGTKFHPGKNVGLGKDHTIFSLIDGLVKFEKFGPDRKQIS 134 (192)
Q Consensus 55 ~A~KKggGSTkNGRdS~~KrLGvK~~~Gq~V~~G~IIVRQRGtkfhPG~NVg~GrD~TLfAlv~G~V~F~k~~~~r~~Vs 134 (192)
|||||++|||+|||||++||||+|+++||.|.+|+|||||||||||||+|||+|+|||||||+||+|+|++.++++++|+
T Consensus 1 mA~KKg~GSt~NgRDS~~krLGvK~~~Gq~v~aG~IivRQRGTk~hpG~NVG~GkDhTlFAl~dG~Vkf~~k~~~rk~vs 80 (87)
T COG0211 1 MAHKKGGGSTRNGRDSESKRLGVKKFGGQFVKAGSIIVRQRGTKFHPGVNVGRGKDHTLFALVDGVVKFETKGKNRKYVS 80 (87)
T ss_pred CcccccccccccCccccccccceeeeCCeEEecccEEEEeccccccCCcccccCCCceEEEeeccEEEEEEccCCccEEE
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeCCC
Q 029509 135 VYPREV 140 (192)
Q Consensus 135 V~p~~~ 140 (192)
|+|.+.
T Consensus 81 V~~~~~ 86 (87)
T COG0211 81 VVPEAE 86 (87)
T ss_pred EEeecc
Confidence 999763
No 3
>CHL00121 rpl27 ribosomal protein L27; Reviewed
Probab=100.00 E-value=6.3e-45 Score=274.27 Aligned_cols=84 Identities=61% Similarity=0.947 Sum_probs=82.2
Q ss_pred eeeccCCCcCCCCCCCCCcccceeeeCCeEeecCcEeeeccCCeEecCCCeeecccccEEeeeceEEEEEEeCCCcEEEE
Q 029509 55 SAHKKGAGSTKNGRDSRGQRLGVKIFGDQVAKPGAIIVRQRGTKFHPGKNVGLGKDHTIFSLIDGLVKFEKFGPDRKQIS 134 (192)
Q Consensus 55 ~A~KKggGSTkNGRdS~~KrLGvK~~~Gq~V~~G~IIVRQRGtkfhPG~NVg~GrD~TLfAlv~G~V~F~k~~~~r~~Vs 134 (192)
|||||++|||+|||||+|||||||+|+||+|.||+||||||||+||||+||||||||||||+++|+|+|++...++++|+
T Consensus 1 mA~KK~~GStkNgrdS~~KrLGvK~~~gq~V~~G~IivRQRGtk~hPG~NVg~GrD~TlfAl~~G~V~f~~~~~~~~~vs 80 (86)
T CHL00121 1 MAHKKGAGSTKNGRDSNAKRLGVKRFGGEKVSAGNILIRQRGTKFKPGLNVGCGKDFTLYALIDGFVKFKKKNKKQKSIN 80 (86)
T ss_pred CCcccccCcCCCCCCCCcccceeEEcCCEEEcCCcEEEEcCCCeECCCCcccccCCceEEEccceEEEEEEeCCCCEEEE
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999888999999
Q ss_pred EEeC
Q 029509 135 VYPR 138 (192)
Q Consensus 135 V~p~ 138 (192)
|+|.
T Consensus 81 v~~~ 84 (86)
T CHL00121 81 VINI 84 (86)
T ss_pred Eeec
Confidence 9985
No 4
>PRK05435 rpmA 50S ribosomal protein L27; Validated
Probab=100.00 E-value=1.4e-44 Score=270.46 Aligned_cols=82 Identities=70% Similarity=1.096 Sum_probs=80.2
Q ss_pred eeeccCCCcCCCCCCCCCcccceeeeCCeEeecCcEeeeccCCeEecCCCeeecccccEEeeeceEEEEEEeCCCcEEEE
Q 029509 55 SAHKKGAGSTKNGRDSRGQRLGVKIFGDQVAKPGAIIVRQRGTKFHPGKNVGLGKDHTIFSLIDGLVKFEKFGPDRKQIS 134 (192)
Q Consensus 55 ~A~KKggGSTkNGRdS~~KrLGvK~~~Gq~V~~G~IIVRQRGtkfhPG~NVg~GrD~TLfAlv~G~V~F~k~~~~r~~Vs 134 (192)
|||||++|||+|||||+|||||||+|+||+|.||+||||||||+||||+||||||||||||+++|+|+|++..+++++|+
T Consensus 1 mA~KK~~GStkNgrdS~~krLGvK~~~g~~V~~G~IivRQRGtk~~PG~nVg~GrD~TlfA~~~G~V~f~~~~~~~~~v~ 80 (82)
T PRK05435 1 MAHKKGGGSTRNGRDSESKRLGVKRFGGQFVKAGNIIVRQRGTKFHPGVNVGRGKDHTLFALVDGVVKFERKGRNRKYVS 80 (82)
T ss_pred CCcccccCcCCCCCCCCcccceeEecCCEEEcCCcEEEEeCCCeECCCCCEeecCCceEEEecceEEEEEEcCCCcEEEE
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999888999999
Q ss_pred EE
Q 029509 135 VY 136 (192)
Q Consensus 135 V~ 136 (192)
|+
T Consensus 81 v~ 82 (82)
T PRK05435 81 VV 82 (82)
T ss_pred EC
Confidence 85
No 5
>PF01016 Ribosomal_L27: Ribosomal L27 protein; InterPro: IPR001684 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. L27 is a protein from the large (50S) subunit; it is essential for ribosome function, but its exact role is unclear. It belongs to a family of ribosomal proteins, examples of which are found in bacteria, chloroplasts of plants and red algae and the mitochondria of fungi (e.g. MRP7 from yeast mitochondria). The schematic relationship between these groups of proteins is shown below. Bacterial L27 Nxxxxxxxxx Algal L27 Nxxxxxxxxx Plant L27 tttttNxxxxxxxxxxxxx Yeast MRP7 tttNxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx 't': transit peptide. 'N': N-terminal of mature protein. ; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 2ZJQ_T 2ZJP_T 3PIP_T 3DLL_T 3PIO_T 1Y69_U 3CF5_T 2ZJR_T 1VSA_U 3PYT_W ....
Probab=100.00 E-value=3.7e-44 Score=267.44 Aligned_cols=81 Identities=69% Similarity=1.077 Sum_probs=74.3
Q ss_pred eeccCCCcCCCCCCCCCcccceeeeCCeEeecCcEeeeccCCeEecCCCeeecccccEEeeeceEEEEEEeCCCcEEEEE
Q 029509 56 AHKKGAGSTKNGRDSRGQRLGVKIFGDQVAKPGAIIVRQRGTKFHPGKNVGLGKDHTIFSLIDGLVKFEKFGPDRKQISV 135 (192)
Q Consensus 56 A~KKggGSTkNGRdS~~KrLGvK~~~Gq~V~~G~IIVRQRGtkfhPG~NVg~GrD~TLfAlv~G~V~F~k~~~~r~~VsV 135 (192)
||||++|||+|||||+|||||||+++||+|.||+||||||||+||||+||||||||||||+++|+|+|++..+++++|+|
T Consensus 1 A~KK~~GSt~NgrdS~~krlGvK~~~G~~V~~G~IivRQRgtk~hPG~NVg~GrD~TLfAl~~G~V~f~~~~~~rk~v~V 80 (81)
T PF01016_consen 1 AHKKGGGSTKNGRDSNPKRLGVKKFGGQFVKAGNIIVRQRGTKFHPGENVGMGRDHTLFALVDGRVKFTKEKRNRKYVSV 80 (81)
T ss_dssp --SSSSSSSS--S-STTTTSEESSSTTCEESSTSEEEEBSSSSSEEBTTEEEETTSEEEESSSCEEEEEEETTTEEEEEE
T ss_pred CCccccccccCCCCCCCcccEEEEeCCEEEcCCCEEEEeCCCcCcCCCCEEECCCCcEEEecCEEEEEEEeCCCCEEEEe
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999889999998
Q ss_pred E
Q 029509 136 Y 136 (192)
Q Consensus 136 ~ 136 (192)
+
T Consensus 81 ~ 81 (81)
T PF01016_consen 81 V 81 (81)
T ss_dssp -
T ss_pred C
Confidence 6
No 6
>TIGR00062 L27 ribosomal protein L27. Eubacterial, chloroplast, and mitochondrial. Mitochondrial members have an additional C-terminal domain.
Probab=100.00 E-value=7.2e-44 Score=267.09 Aligned_cols=82 Identities=68% Similarity=1.040 Sum_probs=79.2
Q ss_pred eeeccCCCcCCCCCCCCCcccceeeeCCeEeecCcEeeeccCCeEecCCCeeecccccEEeeeceEEEEEEeC-CCcEEE
Q 029509 55 SAHKKGAGSTKNGRDSRGQRLGVKIFGDQVAKPGAIIVRQRGTKFHPGKNVGLGKDHTIFSLIDGLVKFEKFG-PDRKQI 133 (192)
Q Consensus 55 ~A~KKggGSTkNGRdS~~KrLGvK~~~Gq~V~~G~IIVRQRGtkfhPG~NVg~GrD~TLfAlv~G~V~F~k~~-~~r~~V 133 (192)
|||||++|||+|||||+|||||||+|+||+|.||+||||||||+||||+||||||||||||+++|+|+|+++. +++++|
T Consensus 1 ~A~Kk~~GSt~NgrdS~~krLGvK~~~gq~V~~G~IivRQRGtk~hPG~nVg~GrD~TlfAl~~G~V~f~~~~~~~r~~v 80 (83)
T TIGR00062 1 MATKKGVGSTKNGRDSEAKRLGVKRAGGQFVRAGSIIVRQRGTKFHPGNNVGMGKDHTLFALSDGVVKFEKKGKRSRKFV 80 (83)
T ss_pred CCcccccCcCCCCCCCCCccceeEecCCEEEcCCcEEEEcCCceECCCCcccccCCCeEEEecceEEEEEEcCCCCCEEE
Confidence 8999999999999999999999999999999999999999999999999999999999999999999999875 589999
Q ss_pred EEE
Q 029509 134 SVY 136 (192)
Q Consensus 134 sV~ 136 (192)
+|+
T Consensus 81 ~v~ 83 (83)
T TIGR00062 81 SVV 83 (83)
T ss_pred EEC
Confidence 884
No 7
>PRK09521 exosome complex RNA-binding protein Csl4; Provisional
Probab=95.48 E-value=0.039 Score=45.51 Aligned_cols=59 Identities=19% Similarity=0.329 Sum_probs=46.4
Q ss_pred CCeEeecCcEeeeccCCeEecCCCeeecccccEEeeeceEEEEEEeCCCcEEEEEEeCCCCCCCC
Q 029509 81 GDQVAKPGAIIVRQRGTKFHPGKNVGLGKDHTIFSLIDGLVKFEKFGPDRKQISVYPREVQPENP 145 (192)
Q Consensus 81 ~Gq~V~~G~IIVRQRGtkfhPG~NVg~GrD~TLfAlv~G~V~F~k~~~~r~~VsV~p~~~~~~~P 145 (192)
+++.|.||+.|.-. -.|.||.|+.. +|.+|||.+-|.+.++. +++.|+|.|.......|
T Consensus 4 ~~~~V~PGe~l~~~--~e~~~G~Gty~-~~~~i~as~~G~~~id~---~~~~Isv~P~~~~~~~~ 62 (189)
T PRK09521 4 QGDLVLPGDYLAVI--EEYLPGEGTYE-DNGEVYASVVGKVFIDD---INRKISVIPFKKTPPLL 62 (189)
T ss_pred cCCEECCCCccccc--cceEcCCCEEe-eCCEEEEEeeEEEEEcC---CCCEEEEecCcCCCCCC
Confidence 67899999999765 36899999987 68889999999999853 45678888866534433
No 8
>PF14382 ECR1_N: Exosome complex exonuclease RRP4 N-terminal region; PDB: 2NN6_I 3M7N_C 2BA1_A 3M85_C.
Probab=94.85 E-value=0.056 Score=35.50 Aligned_cols=38 Identities=24% Similarity=0.557 Sum_probs=31.9
Q ss_pred EeecCcEeeeccCCeEecCCCeeecccccEEeeeceEEEEE
Q 029509 84 VAKPGAIIVRQRGTKFHPGKNVGLGKDHTIFSLIDGLVKFE 124 (192)
Q Consensus 84 ~V~~G~IIVRQRGtkfhPG~NVg~GrD~TLfAlv~G~V~F~ 124 (192)
.|.||+.|-.. ..|.||.|+.+ +|..|||.+-|.|+..
T Consensus 1 iV~PG~~l~~~--~e~~~G~GTY~-~~g~I~asv~G~v~~~ 38 (39)
T PF14382_consen 1 IVVPGDRLGSS--EEYMPGHGTYV-RDGNIYASVAGTVKID 38 (39)
T ss_dssp EE-TT-EEEET--TTSEESTTEEE-ETTEEEESSSEEEEEE
T ss_pred CCCCCCEeecC--CCEecCCCEEE-eCCEEEEEeeEEEEEc
Confidence 47899999986 47899999999 8999999999999864
No 9
>COG1096 Predicted RNA-binding protein (consists of S1 domain and a Zn-ribbon domain) [Translation, ribosomal structure and biogenesis]
Probab=92.44 E-value=0.44 Score=41.15 Aligned_cols=62 Identities=23% Similarity=0.361 Sum_probs=51.0
Q ss_pred eCCeEeecCcEeeeccCCeEecCCCeeecccccEEeeeceEEEEEEeCCCcEEEEEEeCCCCCCCCch
Q 029509 80 FGDQVAKPGAIIVRQRGTKFHPGKNVGLGKDHTIFSLIDGLVKFEKFGPDRKQISVYPREVQPENPNS 147 (192)
Q Consensus 80 ~~Gq~V~~G~IIVRQRGtkfhPG~NVg~GrD~TLfAlv~G~V~F~k~~~~r~~VsV~p~~~~~~~P~s 147 (192)
..|..|.||+.|..+ =.|.||+|+--= |+-|+|...|.+..+. +...++|.|....|.-|.-
T Consensus 3 ~~g~~v~PGd~~a~~--EE~~~G~gt~~~-~g~i~Aa~~G~~~~d~---~n~~~~V~p~~~~~~~~K~ 64 (188)
T COG1096 3 KDGTFVLPGDVLAVI--EEFLPGEGTYEE-GGEIRAAATGVVRRDD---KNRVISVKPGKKTPPLPKG 64 (188)
T ss_pred ccCcEEcCcceeeee--eeeecCCCeEeE-CCEEEEeecccEEEcc---cceEEEeccCCCCCCCCCC
Confidence 468899999999976 479999999876 9999999999999986 4578889998765555543
No 10
>PRK04163 exosome complex RNA-binding protein Rrp4; Provisional
Probab=91.38 E-value=0.6 Score=40.19 Aligned_cols=53 Identities=23% Similarity=0.481 Sum_probs=42.3
Q ss_pred eeCCeEeecCcEeeeccCCeEecCCCeeecccccEEeeeceEEEEEEeCCCcEEEEEEeCCC
Q 029509 79 IFGDQVAKPGAIIVRQRGTKFHPGKNVGLGKDHTIFSLIDGLVKFEKFGPDRKQISVYPREV 140 (192)
Q Consensus 79 ~~~Gq~V~~G~IIVRQRGtkfhPG~NVg~GrD~TLfAlv~G~V~F~k~~~~r~~VsV~p~~~ 140 (192)
+..+..|.||+.|.- -.|.||.|+.. +|..|+|.+-|.+.+.. +.++|.|...
T Consensus 5 ~~~~~~V~PGd~l~~---~~~~~G~Gty~-~~g~i~As~~G~~~~~~-----~~i~V~p~~~ 57 (235)
T PRK04163 5 VEDRKIVVPGDLLAE---GEFKAGRGTYK-ENGKIYSTVVGLVDIKD-----DKVRVIPLEG 57 (235)
T ss_pred eeCCcEECCCCCcCc---CCeecCCceEE-eCCEEEEEEeEEEEEEC-----CEEEEEECCC
Confidence 456789999999953 36899999987 78999999999999863 2677777553
No 11
>PF03961 DUF342: Protein of unknown function (DUF342); InterPro: IPR005646 This family of bacterial proteins has no known function. The proteins are in the region of 500-600 amino acid residues in length.
Probab=83.87 E-value=2.5 Score=39.09 Aligned_cols=37 Identities=35% Similarity=0.554 Sum_probs=29.6
Q ss_pred CeEecCCCeeec-cc-ccEEeeeceEEEEEEeCCCcEEEEEEeC
Q 029509 97 TKFHPGKNVGLG-KD-HTIFSLIDGLVKFEKFGPDRKQISVYPR 138 (192)
Q Consensus 97 tkfhPG~NVg~G-rD-~TLfAlv~G~V~F~k~~~~r~~VsV~p~ 138 (192)
..|.+|+||-+- .| .+|||.++|++.|+.. .++|.|.
T Consensus 143 ~~~~~g~~~~~~~~d~~~~~A~~~G~~~~~~~-----~i~V~~~ 181 (451)
T PF03961_consen 143 IPLKAGKNTEVSEEDGNKLYAAIDGRPVFENG-----KISVDPV 181 (451)
T ss_pred cceeCCCCEEEEcCCCCEEEEecCCEEEEECC-----EEEEEEe
Confidence 678899999999 77 5799999999999842 2566553
No 12
>PF01551 Peptidase_M23: Peptidase family M23; InterPro: IPR016047 Members of this family are zinc metallopeptidases with a range of specificities. The peptidase family M23 is included in this family, these are Gly-Gly endopeptidases. Peptidase family M23 are also endopeptidases. This family also includes some bacterial lipoproteins such as Swiss:P33648 for which no proteolytic activity has been demonstrated. This family also includes leukocyte cell-derived chemotaxin 2 (LECT2) proteins. LECT2 is a liver-specific protein which is thought to be linked to hepatocyte growth although the exact function of this protein is unknown.; PDB: 3IT5_A 3IT7_B 2GU1_A 3NYY_A 2HSI_B 3SLU_B 3UZ0_D 3TUF_B 1QWY_A 2B44_B ....
Probab=80.25 E-value=3.6 Score=29.54 Aligned_cols=39 Identities=18% Similarity=0.293 Sum_probs=27.2
Q ss_pred eEecCCCeeecccccEEeeeceEEEEEEeC-CCcEEEEEE
Q 029509 98 KFHPGKNVGLGKDHTIFSLIDGLVKFEKFG-PDRKQISVY 136 (192)
Q Consensus 98 kfhPG~NVg~GrD~TLfAlv~G~V~F~k~~-~~r~~VsV~ 136 (192)
+||.|-.+.......++|+.+|+|.|.... ....+|.+.
T Consensus 1 r~h~Gid~~~~~g~~V~A~~~G~V~~~~~~~~~g~~V~i~ 40 (96)
T PF01551_consen 1 RFHNGIDFAAPEGTPVYAPADGKVVFVGEDPGYGNYVIIQ 40 (96)
T ss_dssp -EE-SEEEEETTT-EEEESSSEEEEEEEEETTTEEEEEEE
T ss_pred CCeeeEEeCCCCCCEEEeCccEEEEEEEeccCCccEEEEE
Confidence 588888888887888999999999997653 234455544
No 13
>COG1315 Uncharacterized conserved protein [Function unknown]
Probab=68.86 E-value=5.1 Score=39.54 Aligned_cols=37 Identities=41% Similarity=0.483 Sum_probs=31.0
Q ss_pred CeEecCCCeeeccc-ccEEeeeceEEEEEEeCCCcEEEEEEeCC
Q 029509 97 TKFHPGKNVGLGKD-HTIFSLIDGLVKFEKFGPDRKQISVYPRE 139 (192)
Q Consensus 97 tkfhPG~NVg~GrD-~TLfAlv~G~V~F~k~~~~r~~VsV~p~~ 139 (192)
.++++|+|+- =|| .||.|..+|.+-+.+ ..|+|+|.-
T Consensus 219 ~~l~lG~nt~-~kd~~tlvA~~~G~~~~s~-----~tI~V~~iy 256 (543)
T COG1315 219 IKLNLGKNTA-FKDNNTLVAKRDGQPIVSK-----NTISVYPIY 256 (543)
T ss_pred eeeecCCCCc-cCCCCEEEEeeCCeEEecC-----CeeEEEEEE
Confidence 7899999999 666 899999999999864 567888754
No 14
>PF13533 Biotin_lipoyl_2: Biotin-lipoyl like
Probab=60.71 E-value=7.7 Score=25.77 Aligned_cols=17 Identities=24% Similarity=0.321 Sum_probs=14.9
Q ss_pred eeeeCCeEeecCcEeee
Q 029509 77 VKIFGDQVAKPGAIIVR 93 (192)
Q Consensus 77 vK~~~Gq~V~~G~IIVR 93 (192)
+.+-.||+|++|++|++
T Consensus 16 v~V~~G~~VkkGd~L~~ 32 (50)
T PF13533_consen 16 VYVKEGQQVKKGDVLLV 32 (50)
T ss_pred EEecCCCEEcCCCEEEE
Confidence 56679999999999987
No 15
>PRK14844 bifunctional DNA-directed RNA polymerase subunit beta/beta'; Provisional
Probab=58.89 E-value=16 Score=42.39 Aligned_cols=63 Identities=32% Similarity=0.478 Sum_probs=40.7
Q ss_pred eeeeCCeEeecCcEeee-ccCC-e---EecCC-------CeeecccccEEeeeceEEEE-EEeCCCcEEEEEEeCC
Q 029509 77 VKIFGDQVAKPGAIIVR-QRGT-K---FHPGK-------NVGLGKDHTIFSLIDGLVKF-EKFGPDRKQISVYPRE 139 (192)
Q Consensus 77 vK~~~Gq~V~~G~IIVR-QRGt-k---fhPG~-------NVg~GrD~TLfAlv~G~V~F-~k~~~~r~~VsV~p~~ 139 (192)
+-+.+||.|++|+||.| -|-+ + +--|. -.-.-||+.+.|-++|+|.| .+..+.++.|.|.+.+
T Consensus 2526 l~v~~g~~v~~Gdilakipr~~~~t~DIT~GLpRv~eLFEar~pk~~a~isei~G~V~~~~~~~~~~~~i~i~~~~ 2601 (2836)
T PRK14844 2526 LNVQDGQKVHAGDVITRTPRESVKTRDITGGLPRVIELFEARRPKEHAIVSEIDGYVAFSEKDRRGKRSILIKPVD 2601 (2836)
T ss_pred EeeccCceecccceeecccccccccCccCCCCccchheeeeecCCCceEEecCCcEEEecccccCCceEEEEECCC
Confidence 45679999999999998 2211 0 11111 12355789999999999999 3322345566666643
No 16
>COG1097 RRP4 RNA-binding protein Rrp4 and related proteins (contain S1 domain and KH domain) [Translation, ribosomal structure and biogenesis]
Probab=54.87 E-value=27 Score=31.29 Aligned_cols=53 Identities=21% Similarity=0.432 Sum_probs=36.9
Q ss_pred eeCCeEeecCcEeeeccCCeEecCCCeeecccccEEeeeceEEEEEEeCCCcEEEEEEeCC
Q 029509 79 IFGDQVAKPGAIIVRQRGTKFHPGKNVGLGKDHTIFSLIDGLVKFEKFGPDRKQISVYPRE 139 (192)
Q Consensus 79 ~~~Gq~V~~G~IIVRQRGtkfhPG~NVg~GrD~TLfAlv~G~V~F~k~~~~r~~VsV~p~~ 139 (192)
.+..+.|.||++|.-+- .|..|.++.+ +|.-+||.+-|.|...- +.+.|+|.+
T Consensus 5 ~~~~~iV~PGd~vl~~~--~~~~G~Gty~-~~~~iyssv~G~~~~~~-----~~v~VIpl~ 57 (239)
T COG1097 5 VSMRKIVLPGDLVLAEG--SYKLGHGTYF-EGGKIYSSVVGLLDVKG-----KLVRVIPLE 57 (239)
T ss_pred ccccceecCCCccCCCC--CEecCCCcEe-cCCEEEEEEEeEEEEeC-----CEEEEEeCC
Confidence 45678899999755443 3455555555 89999999999999863 235666654
No 17
>cd06850 biotinyl_domain The biotinyl-domain or biotin carboxyl carrier protein (BCCP) domain is present in all biotin-dependent enzymes, such as acetyl-CoA carboxylase, pyruvate carboxylase, propionyl-CoA carboxylase, methylcrotonyl-CoA carboxylase, geranyl-CoA carboxylase, oxaloacetate decarboxylase, methylmalonyl-CoA decarboxylase, transcarboxylase and urea amidolyase. This domain functions in transferring CO2 from one subsite to another, allowing carboxylation, decarboxylation, or transcarboxylation. During this process, biotin is covalently attached to a specific lysine.
Probab=54.62 E-value=25 Score=22.65 Aligned_cols=39 Identities=13% Similarity=0.128 Sum_probs=29.7
Q ss_pred eeeeCCeEeecCcEeeeccCCeEecCCCeeecccccEEeeeceEEEEEE
Q 029509 77 VKIFGDQVAKPGAIIVRQRGTKFHPGKNVGLGKDHTIFSLIDGLVKFEK 125 (192)
Q Consensus 77 vK~~~Gq~V~~G~IIVRQRGtkfhPG~NVg~GrD~TLfAlv~G~V~F~k 125 (192)
+.+-.|++|.+|+.|.+=... ..+.+|.|..+|+|..-.
T Consensus 13 ~~v~~G~~v~~g~~l~~i~~~----------~~~~~i~ap~~G~v~~~~ 51 (67)
T cd06850 13 VLVKEGDKVEAGQPLAVLEAM----------KMENEVTAPVAGVVKEIL 51 (67)
T ss_pred EEeCCCCEECCCCEEEEEEcc----------cEEEEEeCCCCEEEEEEE
Confidence 667789999999999963321 125789999999997654
No 18
>TIGR02994 ectoine_eutE ectoine utilization protein EutE. Members of this family, part of the succinylglutamate desuccinylase / aspartoacylase family (pfam04952), belong to ectoine utilization operons, as found in Sinorhizobium meliloti 1021 (where it the operon is known to be induced by ectoine), Mesorhizobium loti, Silicibacter pomeroyi, Agrobacterium tumefaciens, and Pseudomonas putida.
Probab=51.64 E-value=20 Score=32.41 Aligned_cols=42 Identities=21% Similarity=0.164 Sum_probs=31.4
Q ss_pred eeeCCeEeecCcEeeeccCCeEe-cCCCeeecccccEEeeeceEEEEEEe
Q 029509 78 KIFGDQVAKPGAIIVRQRGTKFH-PGKNVGLGKDHTIFSLIDGLVKFEKF 126 (192)
Q Consensus 78 K~~~Gq~V~~G~IIVRQRGtkfh-PG~NVg~GrD~TLfAlv~G~V~F~k~ 126 (192)
++--|+.|++|++|....- +. +|+-+ ++|.|..+|+|.+.+.
T Consensus 269 ~v~~G~~V~~G~~lg~I~d--~~~~G~~~-----~~i~Ap~dGiV~~~~~ 311 (325)
T TIGR02994 269 MIDLGDPVSKGDVIARVYP--VGRTGVAP-----VEYRAKRDGLLAARHF 311 (325)
T ss_pred ecCCCCEeCCCCEEEEEEC--CCCCCCce-----EEEEeCCCcEEEEEeC
Confidence 3455899999999988765 22 44333 7999999999999654
No 19
>PRK09603 bifunctional DNA-directed RNA polymerase subunit beta/beta'; Reviewed
Probab=46.97 E-value=31 Score=40.23 Aligned_cols=63 Identities=22% Similarity=0.355 Sum_probs=41.9
Q ss_pred eeeeCCeEeecCcEeee-ccCCe----EecCC-------Cee--ecccccEEeeeceEEEEEEeCCCcEEEEEEeCC
Q 029509 77 VKIFGDQVAKPGAIIVR-QRGTK----FHPGK-------NVG--LGKDHTIFSLIDGLVKFEKFGPDRKQISVYPRE 139 (192)
Q Consensus 77 vK~~~Gq~V~~G~IIVR-QRGtk----fhPG~-------NVg--~GrD~TLfAlv~G~V~F~k~~~~r~~VsV~p~~ 139 (192)
+=+.+|+.|.+|+||+| .|-+- +--|. -.- .-||..+.|-+||+|+|.+..+++..|.|.+..
T Consensus 2616 l~v~~g~~v~~gdilak~p~~~~~t~DITgGLprv~eLfear~~~pk~~a~i~ei~G~v~~~~~~~~~~~i~i~~~~ 2692 (2890)
T PRK09603 2616 IAISDGSSVEQAEVLAKIPKATVKSRDITGGLPRVSELFEARKPKPKDVAILSEVDGIVSFGKPIRNKEHIIVTSKD 2692 (2890)
T ss_pred EEecCCCEecccceEeeccccccccccccCCcccchhheEeecCCCCCceEEeccceEEEeccccCCceEEEEECCC
Confidence 45678999999999998 34321 11111 111 356899999999999996543456666666653
No 20
>COG1726 NqrA Na+-transporting NADH:ubiquinone oxidoreductase, subunit NqrA [Energy production and conversion]
Probab=44.46 E-value=1.1e+02 Score=29.74 Aligned_cols=59 Identities=24% Similarity=0.345 Sum_probs=45.3
Q ss_pred CCCCCCcccceeeeCCeEeecCcEeeeccCCeEecCCCeeecccccEEeeeceEEEEEEeCCCcEEEEEE
Q 029509 67 GRDSRGQRLGVKIFGDQVAKPGAIIVRQRGTKFHPGKNVGLGKDHTIFSLIDGLVKFEKFGPDRKQISVY 136 (192)
Q Consensus 67 GRdS~~KrLGvK~~~Gq~V~~G~IIVRQRGtkfhPG~NVg~GrD~TLfAlv~G~V~F~k~~~~r~~VsV~ 136 (192)
|++=.|-|+++|+..|+.|++|++|.--. -.||- -+-|+++|.|.=-+.+.+|..-+|+
T Consensus 33 g~ey~gmrp~mkV~~gD~VkkGq~LfEdK---knpgv--------~~Tap~sG~V~aI~RG~KRvLqsVV 91 (447)
T COG1726 33 GEEYVGMRPSMKVREGDAVKKGQVLFEDK---KNPGV--------VFTAPVSGKVTAIHRGEKRVLQSVV 91 (447)
T ss_pred cccccCCCCcceeccCCeeeccceeeecc---cCCCe--------EEeccCCceEEEeecccceeeeeEE
Confidence 56677889999999999999999998753 34542 2459999999877666677665654
No 21
>PRK05889 putative acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Provisional
Probab=42.87 E-value=38 Score=23.49 Aligned_cols=40 Identities=18% Similarity=0.182 Sum_probs=29.9
Q ss_pred cceeeeCCeEeecCcEeeeccCCeEecCCCeeecccccEEeeeceEEEEE
Q 029509 75 LGVKIFGDQVAKPGAIIVRQRGTKFHPGKNVGLGKDHTIFSLIDGLVKFE 124 (192)
Q Consensus 75 LGvK~~~Gq~V~~G~IIVRQRGtkfhPG~NVg~GrD~TLfAlv~G~V~F~ 124 (192)
.=|.+-.|+.|.+|+.|+-=--.| -++.|.|.++|+|.--
T Consensus 14 ~~~~v~~Gd~V~~g~~l~~ve~~K----------~~~~I~a~~~G~V~~i 53 (71)
T PRK05889 14 LEVVVNEGDQIGKGDTLVLLESMK----------MEIPVLAEVAGTVSKV 53 (71)
T ss_pred EEEEeCCCCEECCCCEEEEEEecc----------ceeEEeCCCCEEEEEE
Confidence 347788899999999998322222 3678999999998654
No 22
>PF13375 RnfC_N: RnfC Barrel sandwich hybrid domain
Probab=41.60 E-value=32 Score=26.46 Aligned_cols=34 Identities=21% Similarity=0.309 Sum_probs=25.4
Q ss_pred eeCCeEeecCcEeeeccCCeEecCCCeeecccccEEeeeceEEEE
Q 029509 79 IFGDQVAKPGAIIVRQRGTKFHPGKNVGLGKDHTIFSLIDGLVKF 123 (192)
Q Consensus 79 ~~~Gq~V~~G~IIVRQRGtkfhPG~NVg~GrD~TLfAlv~G~V~F 123 (192)
+--||+|+.|++|.+--|. + .-.|+|.++|.|.=
T Consensus 46 V~~Gd~V~~GQ~Ia~~~~~-------~----sa~iHAsvSG~V~~ 79 (101)
T PF13375_consen 46 VKVGDKVKKGQLIAEAEGF-------L----SAPIHASVSGTVTA 79 (101)
T ss_pred EcCCCEEcCCCEEEecCCC-------c----EeeEEcCCCeEEEE
Confidence 4469999999999986541 1 12689999999853
No 23
>cd06253 M14_ASTE_ASPA_like_3 A functionally uncharacterized subgroup of the Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily which is part of the M14 family of metallocarboxypeptidases. ASTE catalyzes the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway, and aspartoacylase (ASPA, also known as aminoacylase 2, and ACY-2; EC:3.5.1.15) cleaves N-acetyl L-aspartic acid (NAA) into aspartate and acetate. NAA is abundant in the brain, and hydrolysis of NAA by ASPA may help maintain white matter. ASPA is an NAA scavenger in other tissues. Mutations in the gene encoding ASPA cause Canavan disease (CD), a fatal progressive neurodegenerative disorder involving dysmyelination and spongiform degeneration of white matter in children. This enzyme binds zinc which is necessary for activity. Measurement of elevated NAA levels in urine is used in the diagnosis of CD.
Probab=37.39 E-value=51 Score=29.23 Aligned_cols=41 Identities=15% Similarity=0.121 Sum_probs=29.7
Q ss_pred eeCCeEeecCcEeeeccCCeEecCCCeeecccccEEeeeceEEEEEEe
Q 029509 79 IFGDQVAKPGAIIVRQRGTKFHPGKNVGLGKDHTIFSLIDGLVKFEKF 126 (192)
Q Consensus 79 ~~~Gq~V~~G~IIVRQRGtkfhPG~NVg~GrD~TLfAlv~G~V~F~k~ 126 (192)
+--|+.|++|++|.+..-. ++|+- -+++.|..+|+|.+.+.
T Consensus 244 ~~~G~~V~~Gq~lg~i~dp--~~g~~-----~~~v~Ap~dGiv~~~~~ 284 (298)
T cd06253 244 KHLGDIVKRGDVIGEIVDP--LEGEV-----IEEVIAPCDGILFTLRE 284 (298)
T ss_pred cCCCCEECCCCEEEEEeCC--CCCCe-----eEEEEcCCCeEEEEeec
Confidence 4557888889888877652 23322 25899999999999764
No 24
>cd06663 Biotinyl_lipoyl_domains Biotinyl_lipoyl_domains are present in biotin-dependent carboxylases/decarboxylases, the dihydrolipoyl acyltransferase component (E2) of 2-oxo acid dehydrogenases, and the H-protein of the glycine cleavage system (GCS). These domains transport CO2, acyl, or methylamine, respectively, between components of the complex/protein via a biotinyl or lipoyl group, which is covalently attached to a highly conserved lysine residue.
Probab=31.43 E-value=73 Score=21.53 Aligned_cols=40 Identities=15% Similarity=0.053 Sum_probs=28.3
Q ss_pred cceeeeCCeEeecCcEeeeccCCeEecCCCeeecccccEEeeeceEEEEE
Q 029509 75 LGVKIFGDQVAKPGAIIVRQRGTKFHPGKNVGLGKDHTIFSLIDGLVKFE 124 (192)
Q Consensus 75 LGvK~~~Gq~V~~G~IIVRQRGtkfhPG~NVg~GrD~TLfAlv~G~V~F~ 124 (192)
+=+.+-.|+.|.+|+.|..=-..| -...|.|.++|.|.-.
T Consensus 17 ~~~~v~~G~~v~~g~~l~~ie~~k----------~~~~i~ap~~G~v~~~ 56 (73)
T cd06663 17 VKWLKKVGDKVKKGDVLAEIEAMK----------ATSDVEAPKSGTVKKV 56 (73)
T ss_pred EEEEcCCcCEECCCCEEEEEEeCC----------eEEEEEcCCCEEEEEE
Confidence 336667888999998888732221 1567999999998654
No 25
>cd06251 M14_ASTE_ASPA_like_1 A functionally uncharacterized subgroup of the Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily which is part of the M14 family of metallocarboxypeptidases. ASTE catalyzes the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway, and aspartoacylase (ASPA, also known as aminoacylase 2, and ACY-2; EC:3.5.1.15) cleaves N-acetyl L-aspartic acid (NAA) into aspartate and acetate. NAA is abundant in the brain, and hydrolysis of NAA by ASPA may help maintain white matter. ASPA is an NAA scavenger in other tissues. Mutations in the gene encoding ASPA cause Canavan disease (CD), a fatal progressive neurodegenerative disorder involving dysmyelination and spongiform degeneration of white matter in children. This enzyme binds zinc which is necessary for activity. Measurement of elevated NAA levels in urine is used in the diagnosis of CD.
Probab=28.53 E-value=73 Score=27.89 Aligned_cols=40 Identities=15% Similarity=0.171 Sum_probs=26.9
Q ss_pred eeCCeEeecCcEeeeccCCeEecCCCeeecccccEEeeeceEEEEEEe
Q 029509 79 IFGDQVAKPGAIIVRQRGTKFHPGKNVGLGKDHTIFSLIDGLVKFEKF 126 (192)
Q Consensus 79 ~~~Gq~V~~G~IIVRQRGtkfhPG~NVg~GrD~TLfAlv~G~V~F~k~ 126 (192)
+--|+.|.+|++|.+..-. -| ....++.|+.+|+|.+...
T Consensus 234 ~~~Gd~V~~G~~ig~i~d~---~~-----~~~~~v~ap~~G~v~~~~~ 273 (287)
T cd06251 234 VKLGDKVKKGQLLATITDP---FG-----EEEAEVKAPFDGIVIGRNN 273 (287)
T ss_pred cCCCCEECCCCEEEEEECC---CC-----CceEEEECCCCeEEEEecC
Confidence 4457778888877766441 11 1127899999999987654
No 26
>PRK14875 acetoin dehydrogenase E2 subunit dihydrolipoyllysine-residue acetyltransferase; Provisional
Probab=25.26 E-value=85 Score=26.56 Aligned_cols=43 Identities=9% Similarity=0.078 Sum_probs=32.5
Q ss_pred CCcccceeeeCCeEeecCcEeeeccCCeEecCCCeeecccccEEeeeceEEEE
Q 029509 71 RGQRLGVKIFGDQVAKPGAIIVRQRGTKFHPGKNVGLGKDHTIFSLIDGLVKF 123 (192)
Q Consensus 71 ~~KrLGvK~~~Gq~V~~G~IIVRQRGtkfhPG~NVg~GrD~TLfAlv~G~V~F 123 (192)
.++=.-|.+-.|+.|.+|++|+.--. +--.+.+-|+.+|+|.-
T Consensus 16 ~g~~~~~~~~~g~~v~~~~~~~~~e~----------~k~~~~~~a~~~g~~~~ 58 (371)
T PRK14875 16 EGKVAGWLVQEGDEVEKGDELLDVET----------DKITNEVEAPAAGTLRR 58 (371)
T ss_pred eEEEEEEEcCCCCEeCCCCEEEEEEe----------cceeEEEecCCCeEEEE
Confidence 35556678889999999999998221 22357899999999964
No 27
>PRK09774 fec operon regulator FecR; Reviewed
Probab=23.78 E-value=1.9e+02 Score=25.72 Aligned_cols=39 Identities=15% Similarity=0.065 Sum_probs=32.8
Q ss_pred EeecCcEeeeccCCeEecCCCeeecccccEEeeeceEEEEEEe
Q 029509 84 VAKPGAIIVRQRGTKFHPGKNVGLGKDHTIFSLIDGLVKFEKF 126 (192)
Q Consensus 84 ~V~~G~IIVRQRGtkfhPG~NVg~GrD~TLfAlv~G~V~F~k~ 126 (192)
.|..|..-|+--||+| ||-.-.+.+-.++.+|.|++...
T Consensus 169 ~V~t~~~~v~vlGT~F----~V~~~~~~~~V~V~eG~V~v~~~ 207 (319)
T PRK09774 169 RVLTRQGQLTALGTEF----TVRQQDNFTQLAVQQHAVEVLLA 207 (319)
T ss_pred EEEeCCcEEEEeeeEE----EEEEcCCCceEEEEEEEEEEEEC
Confidence 5777888899999998 57777788889999999999653
No 28
>PRK06549 acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated
Probab=23.42 E-value=1.1e+02 Score=24.65 Aligned_cols=44 Identities=16% Similarity=0.134 Sum_probs=34.8
Q ss_pred CCCcccceeeeCCeEeecCcEeeeccCCeEecCCCeeecccccEEeeeceEEEE
Q 029509 70 SRGQRLGVKIFGDQVAKPGAIIVRQRGTKFHPGKNVGLGKDHTIFSLIDGLVKF 123 (192)
Q Consensus 70 S~~KrLGvK~~~Gq~V~~G~IIVRQRGtkfhPG~NVg~GrD~TLfAlv~G~V~F 123 (192)
-.++=+=|....|+.|.+|+.|+.=.-.|. ...|.|..+|+|..
T Consensus 68 ~~G~V~~i~V~~Gd~V~~Gq~L~~lEamKm----------e~eI~Ap~~G~V~~ 111 (130)
T PRK06549 68 MPGTILKVLVAVGDQVTENQPLLILEAMKM----------ENEIVASSAGTVTA 111 (130)
T ss_pred CCEEEEEEEeCCCCEECCCCEEEEEeccCc----------cEEEEcCCCeEEEE
Confidence 445666789999999999999997544432 57899999999965
No 29
>PRK08225 acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated
Probab=21.39 E-value=1.5e+02 Score=20.24 Aligned_cols=38 Identities=18% Similarity=0.128 Sum_probs=28.1
Q ss_pred ceeeeCCeEeecCcEeeeccCCeEecCCCeeecccccEEeeeceEEEE
Q 029509 76 GVKIFGDQVAKPGAIIVRQRGTKFHPGKNVGLGKDHTIFSLIDGLVKF 123 (192)
Q Consensus 76 GvK~~~Gq~V~~G~IIVRQRGtkfhPG~NVg~GrD~TLfAlv~G~V~F 123 (192)
-+.+-.|+.|.+|+.|..=.-.| -...+.|.++|+|.-
T Consensus 14 ~~~v~~G~~V~~g~~l~~ve~~k----------~~~~v~s~~~G~v~~ 51 (70)
T PRK08225 14 KIVVKVGDTVEEGQDVVILESMK----------MEIPIVAEEAGTVKK 51 (70)
T ss_pred EEEeCCCCEECCCCEEEEEEcCC----------CcceEeCCCCEEEEE
Confidence 36677799999999998732222 267899999999854
No 30
>cd06254 M14_ASTE_ASPA_like_4 A functionally uncharacterized subgroup of the Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily which is part of the M14 family of metallocarboxypeptidases. ASTE catalyzes the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway, and aspartoacylase (ASPA, also known as aminoacylase 2, and ACY-2; EC:3.5.1.15) cleaves N-acetyl L-aspartic acid (NAA) into aspartate and acetate. NAA is abundant in the brain, and hydrolysis of NAA by ASPA may help maintain white matter. ASPA is an NAA scavenger in other tissues. Mutations in the gene encoding ASPA cause Canavan disease (CD), a fatal progressive neurodegenerative disorder involving dysmyelination and spongiform degeneration of white matter in children. This enzyme binds zinc which is necessary for activity. Measurement of elevated NAA levels in urine is used in the diagnosis of CD.
Probab=20.28 E-value=1.6e+02 Score=25.75 Aligned_cols=42 Identities=14% Similarity=0.121 Sum_probs=29.7
Q ss_pred eeeeCCeEeecCcEeeeccCCeEecCCCeeecccccEEeeeceEEEEEEe
Q 029509 77 VKIFGDQVAKPGAIIVRQRGTKFHPGKNVGLGKDHTIFSLIDGLVKFEKF 126 (192)
Q Consensus 77 vK~~~Gq~V~~G~IIVRQRGtkfhPG~NVg~GrD~TLfAlv~G~V~F~k~ 126 (192)
.++-.|+.|++|++|....-.- |+ ..++|.|..||+|-+.+.
T Consensus 236 ~~~~~G~~V~~G~~lg~i~dp~---g~-----~~~~i~Ap~dG~v~~~~~ 277 (288)
T cd06254 236 PFVKAGDTVQKGALLGYVTDYF---GN-----VIAEYRAPFDGVVLYNTA 277 (288)
T ss_pred EecCCCCEecCCCEEEEEECCC---CC-----ceEEEEcCCCcEEEEeeC
Confidence 3445688888888887765421 31 137899999999998764
Done!