Query 029509
Match_columns 192
No_of_seqs 131 out of 912
Neff 3.3
Searched_HMMs 29240
Date Mon Mar 25 23:12:50 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029509.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/029509hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3bbo_X Ribosomal protein L27; 100.0 1.6E-78 5.4E-83 508.6 -2.8 190 1-192 1-198 (198)
2 2zjr_T 50S ribosomal protein L 100.0 2E-47 6.8E-52 289.2 8.4 86 55-140 1-86 (91)
3 3v2d_0 50S ribosomal protein L 100.0 3.2E-47 1.1E-51 285.1 8.5 84 55-138 1-84 (85)
4 2ftc_O L27MT, MRP-L27, mitocho 100.0 7.9E-42 2.7E-46 247.7 6.5 68 56-123 1-69 (69)
5 3r8s_W 50S ribosomal protein L 100.0 1.9E-41 6.4E-46 249.6 8.6 75 64-138 1-76 (76)
6 2xha_A NUSG, transcription ant 94.3 0.023 7.8E-07 47.6 2.9 41 80-139 86-126 (193)
7 2xhc_A Transcription antitermi 93.7 0.047 1.6E-06 48.7 3.8 41 80-139 126-166 (352)
8 3m7n_A Putative uncharacterize 92.5 0.24 8.1E-06 39.6 6.0 55 83-145 2-56 (179)
9 2nn6_I 3'-5' exoribonuclease C 90.4 0.064 2.2E-06 44.2 0.6 57 80-139 17-73 (209)
10 2je6_I RRP4, exosome complex R 90.3 0.49 1.7E-05 40.0 6.0 56 81-145 15-72 (251)
11 2ba0_A Archeal exosome RNA bin 83.1 1.2 4.1E-05 37.0 4.3 48 83-139 3-50 (229)
12 2d5d_A Methylmalonyl-COA decar 79.4 1.5 5E-05 28.6 2.9 37 77-123 19-55 (74)
13 1dcz_A Transcarboxylase 1.3S s 78.7 1.5 5.3E-05 29.0 2.9 38 77-124 22-59 (77)
14 3bbo_W Ribosomal protein L24; 75.5 0.57 1.9E-05 39.3 0.0 22 3-29 1-22 (191)
15 1z6h_A Biotin/lipoyl attachmen 74.1 2.2 7.4E-05 27.8 2.6 37 77-123 13-49 (72)
16 2nn6_H Exosome complex exonucl 73.9 4.3 0.00015 35.5 5.2 50 82-139 39-88 (308)
17 2z0s_A Probable exosome comple 72.4 1 3.5E-05 37.4 0.8 51 82-139 9-59 (235)
18 1iyu_A E2P, dihydrolipoamide a 71.2 2.3 7.8E-05 28.6 2.2 40 74-123 15-54 (79)
19 1qjo_A Dihydrolipoamide acetyl 71.0 3.7 0.00013 27.4 3.2 41 73-123 16-56 (80)
20 2ejm_A Methylcrotonoyl-COA car 69.0 3.8 0.00013 29.1 3.1 37 77-123 28-64 (99)
21 1ghj_A E2, E2, the dihydrolipo 67.8 3.8 0.00013 27.5 2.8 40 74-123 18-57 (79)
22 2auk_A DNA-directed RNA polyme 67.7 3.7 0.00013 33.3 3.1 37 78-126 65-101 (190)
23 1bdo_A Acetyl-COA carboxylase; 67.2 3.6 0.00012 27.6 2.5 37 77-123 25-61 (80)
24 2l5t_A Lipoamide acyltransfera 63.2 2.4 8.1E-05 28.3 1.0 38 76-123 20-57 (77)
25 2lmc_B DNA-directed RNA polyme 62.0 4.8 0.00017 29.3 2.5 31 109-139 22-52 (84)
26 2dn8_A Acetyl-COA carboxylase 59.1 7.1 0.00024 27.6 3.0 36 77-122 31-66 (100)
27 2k7v_A Dihydrolipoyllysine-res 55.6 2.1 7.3E-05 29.4 -0.3 38 76-123 15-52 (85)
28 2k32_A A; NMR {Campylobacter j 55.0 7.8 0.00027 27.6 2.6 19 77-95 15-33 (116)
29 2nn6_G Exosome complex exonucl 54.2 15 0.00051 31.9 4.7 57 82-139 39-120 (289)
30 3crk_C Dihydrolipoyllysine-res 51.9 11 0.00039 25.8 3.0 42 72-123 20-61 (87)
31 2kcc_A Acetyl-COA carboxylase 50.5 13 0.00043 25.6 3.0 38 76-123 18-55 (84)
32 1gjx_A Pyruvate dehydrogenase; 48.8 3.7 0.00013 27.5 0.1 38 75-122 19-56 (81)
33 3lu0_D DNA-directed RNA polyme 46.4 7.2 0.00025 40.9 1.7 59 79-139 1109-1181(1407)
34 2jku_A Propionyl-COA carboxyla 46.3 5.5 0.00019 28.1 0.6 37 77-123 39-75 (94)
35 2dnc_A Pyruvate dehydrogenase 40.7 19 0.00064 25.7 2.8 41 73-123 23-63 (98)
36 2dne_A Dihydrolipoyllysine-res 33.7 25 0.00086 25.6 2.5 42 72-123 22-63 (108)
37 1k8m_A E2 component of branche 33.7 19 0.00065 25.3 1.8 42 72-123 19-60 (93)
38 1pmr_A Dihydrolipoyl succinylt 33.3 6.8 0.00023 26.4 -0.6 39 74-122 19-57 (80)
39 1y8o_B Dihydrolipoyllysine-res 26.2 47 0.0016 25.3 3.0 42 72-123 42-83 (128)
40 3lu0_D DNA-directed RNA polyme 24.4 46 0.0016 35.1 3.3 36 78-125 1004-1039(1407)
41 2qj8_A MLR6093 protein; struct 24.1 59 0.002 27.4 3.5 39 81-125 274-312 (332)
42 3cdx_A Succinylglutamatedesucc 20.8 1.9E+02 0.0064 24.7 6.0 53 79-137 282-338 (354)
43 3dn7_A Cyclic nucleotide bindi 20.1 2.5E+02 0.0085 20.2 5.8 34 83-128 33-66 (194)
No 1
>3bbo_X Ribosomal protein L27; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea} SCOP: i.1.1.1
Probab=100.00 E-value=1.6e-78 Score=508.58 Aligned_cols=190 Identities=81% Similarity=1.218 Sum_probs=85.0
Q ss_pred Cccc-cccceecceeceeeeccCCccceeecCccccC-CceeeecCCC---CCCceeEEeeeccCCCcCCCCCCCCCccc
Q 029509 1 MATA-SMSASLIGSFKGLSLSSSSSSSFLKGDFTVCP-KSVTVSLPPT---SPLPLTIESAHKKGAGSTKNGRDSRGQRL 75 (192)
Q Consensus 1 ~~~~-~~~~~~~~~f~glslss~~sssf~~g~~~~~~-~~~~v~~~~~---~~~~l~ir~A~KKggGSTkNGRdS~~KrL 75 (192)
|||| +|+|||+|+|+|||||| |||||+||.++.. ...++++|.. +++.++|||||||++|||+|||||++|||
T Consensus 1 ~~~~~~~~~~l~~~f~g~s~ss--sssf~~~~~~~~~~~~~~~~~p~~~~~~~~~l~VRmAhKKggGSTkNGRDS~~KRL 78 (198)
T 3bbo_X 1 MAMATSMSLNLIGAFKGLSLSS--TSSFLRGDLSFSPKTSFTVTLPLENLQAPIPLTIESAHKKGAGSTKNGRDSPGQRL 78 (198)
T ss_dssp ------------------------------------------------------------CCCCSSCCCCCCCCCCCCCC
T ss_pred ChHHHHHHHHHHHHhccccccc--ccceecccccccccccccccccccccccchhhheeeeeccCCCCCCCCCCCCCcee
Confidence 4444 49999999999999999 6889999997766 6677888854 67889999999999999999999999999
Q ss_pred ceeeeCCeEeecCcEeeeccCCeEecCCCeeecccccEEeeeceEEEEEEeCCCcEEEEEEeCCCCCCCCchhhhhhhhh
Q 029509 76 GVKIFGDQVAKPGAIIVRQRGTKFHPGKNVGLGKDHTIFSLIDGLVKFEKFGPDRKQISVYPREVQPENPNSYRARKREY 155 (192)
Q Consensus 76 GvK~~~Gq~V~~G~IIVRQRGtkfhPG~NVg~GrD~TLfAlv~G~V~F~k~~~~r~~VsV~p~~~~~~~P~s~r~r~r~~ 155 (192)
|||+|+||+|+||+|||||||||||||+||||||||||||+++|+|+|+++++++++|+|+|++.+++||+++|.|+|++
T Consensus 79 GVK~~gGq~V~aGnIIVRQRGTkfhPG~NVG~GkDhTLFAl~~G~VkF~~~~~~Rk~VsV~p~~~~~~~p~~~r~~~re~ 158 (198)
T 3bbo_X 79 GVKIYGDQVAKPGAIIVRQRGTKFHAGKNVGIGKDHTIFSLIDGLVKFEKFGPDRKKISVYPREIVPENPNSYRARKREN 158 (198)
T ss_dssp SCSSSBCCSSCSCCSSSSCCCCSSCCCCSSSSCCCCCSBCCSCCCCCSSSSCCCCSCCCSSCCCCC--------------
T ss_pred eEEecCCeEeccCcEEEeccCceEcCCCCeeecCCCceEeccceEEEEEEcCCCcEEEEEEeCCccccCchhhhhhHHHH
Confidence 99999999999999999999999999999999999999999999999998789999999999999999999999999999
Q ss_pred hhhHHHHHHHhhhcc---ccccceeehhccccccccCCCC
Q 029509 156 FRLQREKKKARKEAY---LAQPQLVLASALDDAADGLPNC 192 (192)
Q Consensus 156 ~~~~re~~~a~~~~~---~~~~~~~~a~~~~~~~~~~~~~ 192 (192)
||++||++||+|||+ +++|||||||+.+|..+.|++|
T Consensus 159 ~r~r~e~~ka~~e~~~~~~~~~~l~~a~~~~~~~~~~~~c 198 (198)
T 3bbo_X 159 FRLQREKKKARRENYSYTLPTPELVLASASVDDAEANPEC 198 (198)
T ss_dssp ----------------------------------------
T ss_pred HHHHHHHHHHHHhCcccccCCcceeeeeccccccccCCCC
Confidence 999999999999997 9999999999988999999999
No 2
>2zjr_T 50S ribosomal protein L27; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: b.84.4.1 PDB: 1nwx_U* 1nwy_U* 1sm1_U* 1xbp_U* 1y69_U 1yl3_3 2b66_0 2b9n_0 2b9p_0 2zjp_T* 2zjq_T 1nkw_U 3cf5_T* 3dll_T* 3pio_T* 3pip_T* 1pnu_U 1pny_U 1vor_X 1vou_X ...
Probab=100.00 E-value=2e-47 Score=289.22 Aligned_cols=86 Identities=55% Similarity=0.866 Sum_probs=82.3
Q ss_pred eeeccCCCcCCCCCCCCCcccceeeeCCeEeecCcEeeeccCCeEecCCCeeecccccEEeeeceEEEEEEeCCCcEEEE
Q 029509 55 SAHKKGAGSTKNGRDSRGQRLGVKIFGDQVAKPGAIIVRQRGTKFHPGKNVGLGKDHTIFSLIDGLVKFEKFGPDRKQIS 134 (192)
Q Consensus 55 ~A~KKggGSTkNGRdS~~KrLGvK~~~Gq~V~~G~IIVRQRGtkfhPG~NVg~GrD~TLfAlv~G~V~F~k~~~~r~~Vs 134 (192)
|||||++|||+|||||++||||||+|+||+|.||+||||||||+||||+||||||||||||+++|+|+|+++.+++++|+
T Consensus 1 mAhKK~~GSt~NGRdS~~krLGvK~~gGq~V~aG~IivRQRGtk~hPG~NVg~GkD~TLfAl~~G~V~f~~~~~~r~~V~ 80 (91)
T 2zjr_T 1 MAHKKGVGSSKNGRDSNPKYLGVKKFGGEVVKAGNILVRQRGTKFKAGQGVGMGRDHTLFALSDGKVVFINKGKGARFIS 80 (91)
T ss_dssp -CCSSCSSCSSCCCCCCCCCCCCSSCTTCEECSSCEEECCSSSSSEECTTEECCTTSCEEESSCEEEEEEEETTTEEEEE
T ss_pred CCcccCCCCCCCCCCCCCceeeEEecCCeEEcCCeEEEecCCCEEcCCCCEEEcCCCcEEeccceEEEEEEcCCCcEEEE
Confidence 89999999999999999999999999999999999999999999999999999999999999999999998889999999
Q ss_pred EEeCCC
Q 029509 135 VYPREV 140 (192)
Q Consensus 135 V~p~~~ 140 (192)
|+|++.
T Consensus 81 V~p~~~ 86 (91)
T 2zjr_T 81 IEAAQT 86 (91)
T ss_dssp ECCCC-
T ss_pred EEeChh
Confidence 999653
No 3
>3v2d_0 50S ribosomal protein L27; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 2hgj_Z 2hgq_Z 2hgu_Z 2j01_0 2j03_0 2jl6_0 2jl8_0 2wdi_0 2wdj_0 2wdl_0 2wdn_0 2wh2_0 2wh4_0 2wrj_0 2wrl_0 2wro_0 2wrr_0 2x9s_0 2x9u_0 2xg0_0 ...
Probab=100.00 E-value=3.2e-47 Score=285.12 Aligned_cols=84 Identities=56% Similarity=0.964 Sum_probs=74.6
Q ss_pred eeeccCCCcCCCCCCCCCcccceeeeCCeEeecCcEeeeccCCeEecCCCeeecccccEEeeeceEEEEEEeCCCcEEEE
Q 029509 55 SAHKKGAGSTKNGRDSRGQRLGVKIFGDQVAKPGAIIVRQRGTKFHPGKNVGLGKDHTIFSLIDGLVKFEKFGPDRKQIS 134 (192)
Q Consensus 55 ~A~KKggGSTkNGRdS~~KrLGvK~~~Gq~V~~G~IIVRQRGtkfhPG~NVg~GrD~TLfAlv~G~V~F~k~~~~r~~Vs 134 (192)
|||||++|||+|||||++||||||+|+||+|.||+||||||||+||||+||||||||||||++||+|+|++...++++|+
T Consensus 1 MAhKK~gGStkNGrdS~~krLGvK~~~Gq~V~aG~IivRQRGtk~hPG~NVg~GkD~TLfAl~~G~V~f~~~~~~r~~Vs 80 (85)
T 3v2d_0 1 MAHKKGLGSTRNGRDSQAKRLGVKRYEGQVVRAGNILVRQRGTRFKPGKNVGMGRDFTLFALVDGVVEFQDRGRLGRYVH 80 (85)
T ss_dssp --------CCSCCCCCCCCCCEESSCTTCEECTTCEEEECSSCSEEECTTEEECTTCCEEESSSEEEEEEECGGGCEEEE
T ss_pred CCcccCCCCCCCCCCCCCccceeEecCCeEEcCCeEEEecCCccCcCCCCEeEcCCCeEEEecCEEEEEEEcCCCCEEEE
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999878999999
Q ss_pred EEeC
Q 029509 135 VYPR 138 (192)
Q Consensus 135 V~p~ 138 (192)
|+|.
T Consensus 81 V~p~ 84 (85)
T 3v2d_0 81 VRPL 84 (85)
T ss_dssp EEEC
T ss_pred EEEC
Confidence 9985
No 4
>2ftc_O L27MT, MRP-L27, mitochondrial 39S ribosomal protein L27; mitochondrial ribosome, large ribosomal subunit, ribosomal R ribosome; 12.10A {Bos taurus} PDB: 3iy9_O
Probab=100.00 E-value=7.9e-42 Score=247.70 Aligned_cols=68 Identities=41% Similarity=0.793 Sum_probs=67.4
Q ss_pred eeccCCCcCCC-CCCCCCcccceeeeCCeEeecCcEeeeccCCeEecCCCeeecccccEEeeeceEEEE
Q 029509 56 AHKKGAGSTKN-GRDSRGQRLGVKIFGDQVAKPGAIIVRQRGTKFHPGKNVGLGKDHTIFSLIDGLVKF 123 (192)
Q Consensus 56 A~KKggGSTkN-GRdS~~KrLGvK~~~Gq~V~~G~IIVRQRGtkfhPG~NVg~GrD~TLfAlv~G~V~F 123 (192)
||||++|||+| ||||++||||||+|+||+|.||+||||||||+||||+||||||||||||+++|+|+|
T Consensus 1 A~KK~~GSt~N~grdS~~krlGvK~~~Gq~V~aG~IivrQRgtk~hPG~nVg~GkD~TLfAl~~G~V~f 69 (69)
T 2ftc_O 1 ASKKSGGSSKNLGGKSSGRRQGIKKMEGHYVHAGNIIATQRHFRWHPGAHVGVGKNKCLYALEEGIVRY 69 (69)
T ss_pred CcccccCcccCCCCCCCCceeeEEecCCeEecCCeEEEecCCCeEcCCCCeeecCCCcEEEccceEEeC
Confidence 89999999999 999999999999999999999999999999999999999999999999999999997
No 5
>3r8s_W 50S ribosomal protein L27; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 3j19_W 2qam_W* 1p85_U 1p86_U 2awb_W 2gya_U 2gyc_U 2aw4_W 2i2v_W 2j28_W 2i2t_W* 2qao_W* 2qba_W* 2qbc_W* 2qbe_W 2qbg_W 2qbi_W* 2qbk_W* 2qov_W 2qox_W ...
Probab=100.00 E-value=1.9e-41 Score=249.56 Aligned_cols=75 Identities=59% Similarity=0.896 Sum_probs=72.0
Q ss_pred CCCCCCCCCcccceeeeCCeEeecCcEeeeccCCeEecCCCeeecccccEEeeeceEEEEEEe-CCCcEEEEEEeC
Q 029509 64 TKNGRDSRGQRLGVKIFGDQVAKPGAIIVRQRGTKFHPGKNVGLGKDHTIFSLIDGLVKFEKF-GPDRKQISVYPR 138 (192)
Q Consensus 64 TkNGRdS~~KrLGvK~~~Gq~V~~G~IIVRQRGtkfhPG~NVg~GrD~TLfAlv~G~V~F~k~-~~~r~~VsV~p~ 138 (192)
|+|||||++||||||+|+||+|.||+||||||||+||||+||||||||||||++||+|+|++. .+++++|+|+|+
T Consensus 1 t~NGRDS~~krLGvK~~~Gq~V~aG~IivRQRGtk~hPG~NVG~GkD~TLfAl~~G~V~f~~~~~~~r~~VsV~p~ 76 (76)
T 3r8s_W 1 TRNGRDSEAKRLGVKRFGGESVLAGSIIVRQRGTKFHAGANVGCGRDHTLFAKADGKVKFEVKGPKNRKFISIEAE 76 (76)
T ss_dssp CCCCCCCCCCCCEESSCTTCEECTTCEEEECSSCSSEECTTEEECTTSCEEESSSEEEEEEEETTTTEEEEEEECC
T ss_pred CCCCCCCCcccceEEecCCeEEecCcEEEeccCccCcCCCCeeecCCCeEEEccCEEEEEEEeCCCCCEEEEEEeC
Confidence 799999999999999999999999999999999999999999999999999999999999865 568999999984
No 6
>2xha_A NUSG, transcription antitermination protein NUSG; 1.91A {Thermotoga maritima}
Probab=94.34 E-value=0.023 Score=47.57 Aligned_cols=41 Identities=17% Similarity=0.159 Sum_probs=32.8
Q ss_pred eCCeEeecCcEeeeccCCeEecCCCeeecccccEEeeeceEEEEEEeCCCcEEEEEEeCC
Q 029509 80 FGDQVAKPGAIIVRQRGTKFHPGKNVGLGKDHTIFSLIDGLVKFEKFGPDRKQISVYPRE 139 (192)
Q Consensus 80 ~~Gq~V~~G~IIVRQRGtkfhPG~NVg~GrD~TLfAlv~G~V~F~k~~~~r~~VsV~p~~ 139 (192)
-+|+.|.+|.||. ||+.+.|-+||+|.|.+ +++.|-|.|..
T Consensus 86 ~dG~~V~~GdvLA----------------Kd~AIiaEIdG~V~fgk---gkrrivI~~~~ 126 (193)
T 2xha_A 86 RVGTKVKQGLPLS----------------KNEEYICELDGKIVEIE---RMKKVVVQTPD 126 (193)
T ss_dssp CTTCEECTTSBSS----------------TTSCSBCCSSEEEEEEE---EEEEEEEECTT
T ss_pred CCCCEEcCCCEEe----------------cCCeEEEccceEEEECC---CeEEEEEECCC
Confidence 4567777777776 99999999999999987 66777777754
No 7
>2xhc_A Transcription antitermination protein NUSG; 2.45A {Thermotoga maritima}
Probab=93.70 E-value=0.047 Score=48.73 Aligned_cols=41 Identities=17% Similarity=0.135 Sum_probs=31.9
Q ss_pred eCCeEeecCcEeeeccCCeEecCCCeeecccccEEeeeceEEEEEEeCCCcEEEEEEeCC
Q 029509 80 FGDQVAKPGAIIVRQRGTKFHPGKNVGLGKDHTIFSLIDGLVKFEKFGPDRKQISVYPRE 139 (192)
Q Consensus 80 ~~Gq~V~~G~IIVRQRGtkfhPG~NVg~GrD~TLfAlv~G~V~F~k~~~~r~~VsV~p~~ 139 (192)
-+|+.|.+|+||. ||+.+.|-+||+|.|.+. ++.|-|.|..
T Consensus 126 ~~g~~v~~G~vla----------------k~~aiiaeidG~V~fg~~---kr~i~i~~~~ 166 (352)
T 2xhc_A 126 RVGTKVKQGLPLS----------------KNEEYICELDGKIVEIER---MKKVVVQTPD 166 (352)
T ss_dssp CTTCEECTTCBSB----------------SSSSCBCCSCEEEEEEEE---EEEEEEECTT
T ss_pred CCCCEEccCcEEe----------------cCceEEeccceEEEECCc---EEEEEEECCC
Confidence 4566666666666 999999999999999874 6666676644
No 8
>3m7n_A Putative uncharacterized protein AF_0206; exosome, RNA, exonuclease, hydrolase, nuclease, hydrolase-RN; 2.40A {Archaeoglobus fulgidus} PDB: 2ba1_A 3m85_A
Probab=92.51 E-value=0.24 Score=39.61 Aligned_cols=55 Identities=18% Similarity=0.239 Sum_probs=42.3
Q ss_pred eEeecCcEeeeccCCeEecCCCeeecccccEEeeeceEEEEEEeCCCcEEEEEEeCCCCCCCC
Q 029509 83 QVAKPGAIIVRQRGTKFHPGKNVGLGKDHTIFSLIDGLVKFEKFGPDRKQISVYPREVQPENP 145 (192)
Q Consensus 83 q~V~~G~IIVRQRGtkfhPG~NVg~GrD~TLfAlv~G~V~F~k~~~~r~~VsV~p~~~~~~~P 145 (192)
+.|.||+.|.-. ..|.||.++..- |..|+|.+-|.|.+. .+.|+|.|....+..|
T Consensus 2 ~iV~PGd~l~~~--~~~~~G~Gty~~-~~~i~as~~G~v~~~-----~~~v~V~~~~~~~y~p 56 (179)
T 3m7n_A 2 RFVMPGDRIGSA--EEYVKGEGVYEE-GGELFAAVAGKLIIK-----DRVAKVESISPIPEIV 56 (179)
T ss_dssp CEECTTCEEEET--TTSEECTTEEEE-TTEEEESSSEEEEEE-----TTEEEEEESSCCCCCC
T ss_pred eEEcCCCCCCCC--CCEeccCCEEEe-CCEEEEEEEEEEEEe-----CCEEEEEECCCCcccC
Confidence 478999999754 358999999884 889999999999983 2578898865443333
No 9
>2nn6_I 3'-5' exoribonuclease CSL4 homolog; RNA, exosome, PM/SCL, phosphorolytic, hydrolase/transferase complex; 3.35A {Homo sapiens} SCOP: b.40.4.5 b.84.4.2
Probab=90.43 E-value=0.064 Score=44.24 Aligned_cols=57 Identities=18% Similarity=0.131 Sum_probs=39.9
Q ss_pred eCCeEeecCcEeeeccCCeEecCCCeeecccccEEeeeceEEEEEEeCCCcEEEEEEeCC
Q 029509 80 FGDQVAKPGAIIVRQRGTKFHPGKNVGLGKDHTIFSLIDGLVKFEKFGPDRKQISVYPRE 139 (192)
Q Consensus 80 ~~Gq~V~~G~IIVRQRGtkfhPG~NVg~GrD~TLfAlv~G~V~F~k~~~~r~~VsV~p~~ 139 (192)
..++.|.||+.|... ..|.||.|+.. .|..|||.+-|.|.++..+.....|+|.|..
T Consensus 17 ~~~~iV~PGd~l~~~--~~~~~G~Gty~-~~g~I~Asv~G~v~~~~~~~~~~vi~V~p~~ 73 (209)
T 2nn6_I 17 PPVRYCIPGERLCNL--EEGSPGSGTYT-RHGYIFSSLAGCLMKSSENGALPVVSVVRET 73 (209)
T ss_dssp ---CCCCTTCEEEET--TTCCCSSSCEE-ETTEEECCSCSCBCCCBCTTSSBC-CBCCSC
T ss_pred CCCcEEcCCCCCCCC--CCeeecCCEEE-ECCEEEEEEEEEEEEeccCCcccEEEEecCC
Confidence 347789999999854 35899999876 4678999999999875433334556777654
No 10
>2je6_I RRP4, exosome complex RNA-binding protein 1; nuclease, hydrolase, exonuclease, phosphorolytic, exoribonuclease, RNA degradation; HET: 1PE; 1.6A {Sulfolobus solfataricus} SCOP: b.40.4.5 b.84.4.2 d.51.1.1 PDB: 2jea_I* 2jeb_I* 3l7z_C
Probab=90.32 E-value=0.49 Score=39.99 Aligned_cols=56 Identities=20% Similarity=0.280 Sum_probs=43.3
Q ss_pred CCeEeecCcEeeeccCCeEecCC--CeeecccccEEeeeceEEEEEEeCCCcEEEEEEeCCCCCCCC
Q 029509 81 GDQVAKPGAIIVRQRGTKFHPGK--NVGLGKDHTIFSLIDGLVKFEKFGPDRKQISVYPREVQPENP 145 (192)
Q Consensus 81 ~Gq~V~~G~IIVRQRGtkfhPG~--NVg~GrD~TLfAlv~G~V~F~k~~~~r~~VsV~p~~~~~~~P 145 (192)
+++.|.||+.|... .|.||. ++.. .|..|||.+-|.|.+.. +.|+|.|....++.|
T Consensus 15 ~~~iV~PGd~l~~~---~~~~G~~~Gty~-~~g~i~as~~G~v~~~~-----~~v~V~p~~~~~y~p 72 (251)
T 2je6_I 15 PRSIVVPGELLAEG---EFQIPWSPYILK-INSKYYSTVVGLFDVKD-----TQFEVIPLEGSFYYP 72 (251)
T ss_dssp SSCEECTTCEEEEE---CCCCCCCTTEEE-ETTEEEECSSEEEEEET-----TEEEEEESCCSCCCC
T ss_pred CCcEEcCCCCCccC---CeeeCCCCCEEE-ECCEEEEEEEEEEEEeC-----CEEEEEECCCcccCC
Confidence 58899999999853 488999 9876 57789999999998752 368888876533333
No 11
>2ba0_A Archeal exosome RNA binding protein RRP4; RNAse PH, RNA degradation, exoribonuclease, S1domain, KH domain, archaeal; 2.70A {Archaeoglobus fulgidus} SCOP: b.40.4.5 b.84.4.2 d.51.1.1
Probab=83.06 E-value=1.2 Score=36.99 Aligned_cols=48 Identities=17% Similarity=0.351 Sum_probs=37.7
Q ss_pred eEeecCcEeeeccCCeEecCCCeeecccccEEeeeceEEEEEEeCCCcEEEEEEeCC
Q 029509 83 QVAKPGAIIVRQRGTKFHPGKNVGLGKDHTIFSLIDGLVKFEKFGPDRKQISVYPRE 139 (192)
Q Consensus 83 q~V~~G~IIVRQRGtkfhPG~NVg~GrD~TLfAlv~G~V~F~k~~~~r~~VsV~p~~ 139 (192)
+.|.||+.|.. ..|.||.++.. .|..|||.+.|.|.+.. +.|+|.|..
T Consensus 3 ~iV~PGd~l~~---~~~~~G~Gty~-~~g~i~as~~G~v~~~~-----~~v~V~p~~ 50 (229)
T 2ba0_A 3 KIVLPGDLLST---NPRAAGYGTYV-EGGKVYAKIIGLFDQTE-----THVRVIPLK 50 (229)
T ss_dssp CEECTTCEEES---CTTSBCTTEEE-ETTEEEECSSEEEEECS-----SCEEEEECS
T ss_pred CEEcCCCCccc---CCeEecCCEEE-eCCEEEEEEEEEEEEeC-----CEEEEEeCC
Confidence 67999999983 34789999887 67889999999988652 247888754
No 12
>2d5d_A Methylmalonyl-COA decarboxylase gamma chain; biotin, BCCP, structural genomics, NPPSFA; 1.55A {Pyrococcus horikoshii} PDB: 2ejf_C* 2ejg_C* 2evb_A
Probab=79.36 E-value=1.5 Score=28.59 Aligned_cols=37 Identities=24% Similarity=0.217 Sum_probs=29.2
Q ss_pred eeeeCCeEeecCcEeeeccCCeEecCCCeeecccccEEeeeceEEEE
Q 029509 77 VKIFGDQVAKPGAIIVRQRGTKFHPGKNVGLGKDHTIFSLIDGLVKF 123 (192)
Q Consensus 77 vK~~~Gq~V~~G~IIVRQRGtkfhPG~NVg~GrD~TLfAlv~G~V~F 123 (192)
+..-.|+.|++|++|++---.+. ..+|.|+.+|+|.-
T Consensus 19 ~~v~~G~~V~~G~~l~~i~~~~~----------~~~i~ap~~G~v~~ 55 (74)
T 2d5d_A 19 VLVRVGDRVRVGQGLLVLEAMKM----------ENEIPSPRDGVVKR 55 (74)
T ss_dssp ECCCTTCEECTTCEEEEEEETTE----------EEEEECSSSEEEEE
T ss_pred EEcCCCCEeCCCCEEEEEecccc----------eEEEeCCCCEEEEE
Confidence 34558999999999998654443 46899999999964
No 13
>1dcz_A Transcarboxylase 1.3S subunit; antiparallel beta sheet, hammerhead, biocytin, transferase; NMR {Propionibacterium freudenreichiisubsp} SCOP: b.84.1.1 PDB: 1dd2_A 1o78_A
Probab=78.67 E-value=1.5 Score=28.96 Aligned_cols=38 Identities=18% Similarity=0.237 Sum_probs=29.8
Q ss_pred eeeeCCeEeecCcEeeeccCCeEecCCCeeecccccEEeeeceEEEEE
Q 029509 77 VKIFGDQVAKPGAIIVRQRGTKFHPGKNVGLGKDHTIFSLIDGLVKFE 124 (192)
Q Consensus 77 vK~~~Gq~V~~G~IIVRQRGtkfhPG~NVg~GrD~TLfAlv~G~V~F~ 124 (192)
+..-.|+.|.+|++|++-...++ ..+|.|+.+|+|.-.
T Consensus 22 ~~v~~G~~V~~G~~L~~l~~~~~----------~~~i~Ap~~G~v~~~ 59 (77)
T 1dcz_A 22 ILVKEGDTVKAGQTVLVLEAMKM----------ETEINAPTDGKVEKV 59 (77)
T ss_dssp ECCCTTCEECTTSEEEEEEETTE----------EEEEECSSSEEEEEE
T ss_pred EEcCCcCEEcCCCEEEEEEccce----------eEEEECCCCEEEEEE
Confidence 44558999999999998655443 578999999998753
No 14
>3bbo_W Ribosomal protein L24; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea}
Probab=75.50 E-value=0.57 Score=39.31 Aligned_cols=22 Identities=59% Similarity=0.697 Sum_probs=0.0
Q ss_pred cccccceecceeceeeeccCCccceee
Q 029509 3 TASMSASLIGSFKGLSLSSSSSSSFLK 29 (192)
Q Consensus 3 ~~~~~~~~~~~f~glslss~~sssf~~ 29 (192)
||+| +|-++|.+||||| +|||-
T Consensus 1 ~~~~--~~~~~~~~~~~~~---~~~~~ 22 (191)
T 3bbo_W 1 MAAM--VLQSSFTSLSLSS---NSFLG 22 (191)
T ss_dssp ---------------------------
T ss_pred Ccch--hhhhhhhcccccc---ccccC
Confidence 4567 7889999999977 44553
No 15
>1z6h_A Biotin/lipoyl attachment protein; solution structure, biosynthetic protein; HET: BTI; NMR {Bacillus subtilis} PDB: 1z7t_A 2b8f_A 2b8g_A*
Probab=74.09 E-value=2.2 Score=27.79 Aligned_cols=37 Identities=19% Similarity=0.187 Sum_probs=28.2
Q ss_pred eeeeCCeEeecCcEeeeccCCeEecCCCeeecccccEEeeeceEEEE
Q 029509 77 VKIFGDQVAKPGAIIVRQRGTKFHPGKNVGLGKDHTIFSLIDGLVKF 123 (192)
Q Consensus 77 vK~~~Gq~V~~G~IIVRQRGtkfhPG~NVg~GrD~TLfAlv~G~V~F 123 (192)
+..-.|+.|.+|++|++=--.+ ...+|.|+++|+|.-
T Consensus 13 ~~v~~G~~V~~G~~l~~i~~~~----------~~~~i~ap~~G~v~~ 49 (72)
T 1z6h_A 13 VHVKAGDQIEKGQEVAILESMK----------MEIPIVADRSGIVKE 49 (72)
T ss_dssp ECCCTTCEECTTCEEEEEEETT----------EEEEEECSSCEEEEE
T ss_pred EEcCCcCEECCCCEEEEEECCc----------cEEEEECCCCcEEEE
Confidence 4556799999999999743222 367899999999863
No 16
>2nn6_H Exosome complex exonuclease RRP4; RNA, exosome, PM/SCL, phosphorolytic, hydrolase/transferase complex; 3.35A {Homo sapiens} SCOP: b.40.4.5 b.84.4.2 d.51.1.1
Probab=73.94 E-value=4.3 Score=35.53 Aligned_cols=50 Identities=22% Similarity=0.340 Sum_probs=36.8
Q ss_pred CeEeecCcEeeeccCCeEecCCCeeecccccEEeeeceEEEEEEeCCCcEEEEEEeCC
Q 029509 82 DQVAKPGAIIVRQRGTKFHPGKNVGLGKDHTIFSLIDGLVKFEKFGPDRKQISVYPRE 139 (192)
Q Consensus 82 Gq~V~~G~IIVRQRGtkfhPG~NVg~GrD~TLfAlv~G~V~F~k~~~~r~~VsV~p~~ 139 (192)
++.|.||+.|... -.|.||.++.. .|..|||.+-|.|... .+.|+|.|..
T Consensus 39 ~~iVlPGd~L~~~--~~~~~G~Gty~-~~g~I~Asv~G~v~~~-----~~~vsV~p~~ 88 (308)
T 2nn6_H 39 KHLVVPGDTITTD--TGFMRGHGTYM-GEEKLIASVAGSVERV-----NKLICVKALK 88 (308)
T ss_dssp -CBCCTTCBCCCC--TTCCBCTTEEE-CSSSEEECSSEEEEEE-----TTEEEEEESS
T ss_pred CcEEeCCCCCCCC--CCEeecCCeEE-ECCEEEEEEEEEEEec-----CCEEEEeeCC
Confidence 5679999999753 35889999876 4677999999998854 1356676643
No 17
>2z0s_A Probable exosome complex RNA-binding protein 1; alpha/beta protein, cytoplasm, structural genomics, NPPSFA; 3.20A {Aeropyrum pernix} SCOP: b.40.4.5 d.51.1.1
Probab=72.42 E-value=1 Score=37.36 Aligned_cols=51 Identities=12% Similarity=0.016 Sum_probs=0.0
Q ss_pred CeEeecCcEeeeccCCeEecCCCeeecccccEEeeeceEEEEEEeCCCcEEEEEEeCC
Q 029509 82 DQVAKPGAIIVRQRGTKFHPGKNVGLGKDHTIFSLIDGLVKFEKFGPDRKQISVYPRE 139 (192)
Q Consensus 82 Gq~V~~G~IIVRQRGtkfhPG~NVg~GrD~TLfAlv~G~V~F~k~~~~r~~VsV~p~~ 139 (192)
++.|.||+.|.. -.|.||.++.. .|..|+|.+-|.|.+.. ++..++|.|..
T Consensus 9 ~~iV~PGd~l~~---~~~~~G~Gty~-~~~~I~Asv~G~v~~~~---~~~~vsV~p~~ 59 (235)
T 2z0s_A 9 GRIVVPGEPLPE---EVEASPPYVID-YKGVKRATVVGLLREKG---DGGGRAFVKLK 59 (235)
T ss_dssp ----------------------------------------------------------
T ss_pred CcEEeCCCCccc---CceEcCCCEEE-ECCEEEEEEeEEEEEeC---CccEEEEEeCC
Confidence 578999999975 24899998875 57789999999988653 23457777644
No 18
>1iyu_A E2P, dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex; glycolysis, acyltransferase, lipoyl; NMR {Azotobacter vinelandii} SCOP: b.84.1.1 PDB: 1iyv_A
Probab=71.16 E-value=2.3 Score=28.58 Aligned_cols=40 Identities=15% Similarity=0.063 Sum_probs=31.3
Q ss_pred ccceeeeCCeEeecCcEeeeccCCeEecCCCeeecccccEEeeeceEEEE
Q 029509 74 RLGVKIFGDQVAKPGAIIVRQRGTKFHPGKNVGLGKDHTIFSLIDGLVKF 123 (192)
Q Consensus 74 rLGvK~~~Gq~V~~G~IIVRQRGtkfhPG~NVg~GrD~TLfAlv~G~V~F 123 (192)
=.-|.+-.|+.|.+|++|+.---.+. .++|.|+.+|+|.-
T Consensus 15 i~~~~v~~Gd~V~~G~~l~~le~~k~----------~~~i~Ap~~G~v~~ 54 (79)
T 1iyu_A 15 VIELLVKTGDLIEVEQGLVVLESAKA----------SMEVPSPKAGVVKS 54 (79)
T ss_dssp EEEECCCTTCBCCSSSEEEEEECSSC----------EEEEECSSSSEEEE
T ss_pred EEEEecCCCCEEcCCCEEEEEEccce----------EEEEECCCCEEEEE
Confidence 34456668999999999998765443 47899999999874
No 19
>1qjo_A Dihydrolipoamide acetyltransferase; lipoyl domain, pyruvate dehydrogenase; NMR {Escherichia coli} SCOP: b.84.1.1
Probab=71.05 E-value=3.7 Score=27.44 Aligned_cols=41 Identities=15% Similarity=0.129 Sum_probs=31.6
Q ss_pred cccceeeeCCeEeecCcEeeeccCCeEecCCCeeecccccEEeeeceEEEE
Q 029509 73 QRLGVKIFGDQVAKPGAIIVRQRGTKFHPGKNVGLGKDHTIFSLIDGLVKF 123 (192)
Q Consensus 73 KrLGvK~~~Gq~V~~G~IIVRQRGtkfhPG~NVg~GrD~TLfAlv~G~V~F 123 (192)
+=.-|.+-.|+.|.+|++|++---.+ -.++|.|+.+|+|.-
T Consensus 16 ~v~~~~v~~G~~V~~G~~l~~ie~~~----------~~~~i~Ap~~G~v~~ 56 (80)
T 1qjo_A 16 EVTEVMVKVGDKVAAEQSLITVEGDK----------ASMEVPAPFAGVVKE 56 (80)
T ss_dssp EEEECCCCTTCEECBTSEEEEEESSS----------SCEEEEBSSCEEEEE
T ss_pred EEEEEEcCCCCEECCCCEEEEEEcCC----------ceEEEeCCCCEEEEE
Confidence 33345566899999999999865443 368899999999974
No 20
>2ejm_A Methylcrotonoyl-COA carboxylase subunit alpha; biotin-requiring enzyme, biotin, actyl COA carboxylase, fatty acid synthesis, structural genomics; NMR {Homo sapiens}
Probab=69.03 E-value=3.8 Score=29.09 Aligned_cols=37 Identities=32% Similarity=0.312 Sum_probs=29.4
Q ss_pred eeeeCCeEeecCcEeeeccCCeEecCCCeeecccccEEeeeceEEEE
Q 029509 77 VKIFGDQVAKPGAIIVRQRGTKFHPGKNVGLGKDHTIFSLIDGLVKF 123 (192)
Q Consensus 77 vK~~~Gq~V~~G~IIVRQRGtkfhPG~NVg~GrD~TLfAlv~G~V~F 123 (192)
+.+-.|+.|++|++|++---.++ ..+|.|+.+|+|.-
T Consensus 28 ~~v~~Gd~V~~Gq~L~~ie~~~~----------~~~i~AP~~G~V~~ 64 (99)
T 2ejm_A 28 VFVKAGDKVKAGDSLMVMIAMKM----------EHTIKSPKDGTVKK 64 (99)
T ss_dssp ECCCTTEEECSSCEEEEEESSSS----------EEEEECSSCEEEEE
T ss_pred EECCCCCEECCCCEEEEEEccce----------eEEEECCCCeEEEE
Confidence 55668999999999998554333 46899999999874
No 21
>1ghj_A E2, E2, the dihydrolipoamide succinyltransferase component of 2-oxoglutarate dehydrogenase...; glycolysis, acyltransferase, lipoyl; NMR {Azotobacter vinelandii} SCOP: b.84.1.1 PDB: 1ghk_A
Probab=67.83 E-value=3.8 Score=27.47 Aligned_cols=40 Identities=15% Similarity=0.101 Sum_probs=31.0
Q ss_pred ccceeeeCCeEeecCcEeeeccCCeEecCCCeeecccccEEeeeceEEEE
Q 029509 74 RLGVKIFGDQVAKPGAIIVRQRGTKFHPGKNVGLGKDHTIFSLIDGLVKF 123 (192)
Q Consensus 74 rLGvK~~~Gq~V~~G~IIVRQRGtkfhPG~NVg~GrD~TLfAlv~G~V~F 123 (192)
=.-|.+-.|+.|.+|++|+.---.|. .+.|.|+.+|+|.-
T Consensus 18 i~~~~v~~Gd~V~~G~~l~~ie~~k~----------~~~i~Ap~~G~v~~ 57 (79)
T 1ghj_A 18 VATWHKKPGEAVKRDELIVDIETDKV----------VMEVLAEADGVIAE 57 (79)
T ss_dssp ECCCSSCTTSEECSSCEEEEEECSSC----------EEEEECSSCEEEEE
T ss_pred EEEEEcCCCCEECCCCEEEEEEccce----------eEEEEcCCCEEEEE
Confidence 33455668999999999998655443 48899999999874
No 22
>2auk_A DNA-directed RNA polymerase beta' chain; sandwich-barrel hybrid motif, transferase; 2.30A {Escherichia coli}
Probab=67.68 E-value=3.7 Score=33.30 Aligned_cols=37 Identities=14% Similarity=0.379 Sum_probs=27.4
Q ss_pred eeeCCeEeecCcEeeeccCCeEecCCCeeecccccEEeeeceEEEEEEe
Q 029509 78 KIFGDQVAKPGAIIVRQRGTKFHPGKNVGLGKDHTIFSLIDGLVKFEKF 126 (192)
Q Consensus 78 K~~~Gq~V~~G~IIVRQRGtkfhPG~NVg~GrD~TLfAlv~G~V~F~k~ 126 (192)
.+-+||.|++|++|+ .|-| -.+.|.+-++|+|+|+..
T Consensus 65 ~V~dG~~V~~G~~la-----ewDp-------~t~pIisE~~G~V~f~di 101 (190)
T 2auk_A 65 AKGDGEQVAGGETVA-----NWDP-------HTMPVITEVSGFVRFTDM 101 (190)
T ss_dssp SSCTTCEECTTCEEE-----ECCS-------SEEEEECSSCEEEEEESC
T ss_pred EecCCCEEcCCCEEE-----EEcC-------cCCcEEeccccEEEEEec
Confidence 345788888888887 4544 235699999999999753
No 23
>1bdo_A Acetyl-COA carboxylase; BCCPSC, carboxyl transferase, fatty acid biosynthesis, hamme structure, selenomethionine, ligase, transferase; HET: BTN; 1.80A {Escherichia coli} SCOP: b.84.1.1 PDB: 2bdo_A* 1a6x_A 3bdo_A
Probab=67.16 E-value=3.6 Score=27.59 Aligned_cols=37 Identities=22% Similarity=0.064 Sum_probs=29.1
Q ss_pred eeeeCCeEeecCcEeeeccCCeEecCCCeeecccccEEeeeceEEEE
Q 029509 77 VKIFGDQVAKPGAIIVRQRGTKFHPGKNVGLGKDHTIFSLIDGLVKF 123 (192)
Q Consensus 77 vK~~~Gq~V~~G~IIVRQRGtkfhPG~NVg~GrD~TLfAlv~G~V~F 123 (192)
|.+-.|+.|.+|++|++---.+. ..+|.|+.+|+|.-
T Consensus 25 ~~v~~G~~V~~G~~l~~ie~~k~----------~~~i~Ap~~G~v~~ 61 (80)
T 1bdo_A 25 AFIEVGQKVNVGDTLCIVEAMKM----------MNQIEADKSGTVKA 61 (80)
T ss_dssp CSCCTTCEECTTCEEEEEEETTE----------EEEEECSSCEEEEE
T ss_pred cccCCcCEECCCCEEEEEEeccE----------EEEEECCCCEEEEE
Confidence 34558999999999998654332 47899999999974
No 24
>2l5t_A Lipoamide acyltransferase; E2 lipoyl domain; NMR {Thermoplasma acidophilum}
Probab=63.21 E-value=2.4 Score=28.30 Aligned_cols=38 Identities=13% Similarity=0.042 Sum_probs=29.7
Q ss_pred ceeeeCCeEeecCcEeeeccCCeEecCCCeeecccccEEeeeceEEEE
Q 029509 76 GVKIFGDQVAKPGAIIVRQRGTKFHPGKNVGLGKDHTIFSLIDGLVKF 123 (192)
Q Consensus 76 GvK~~~Gq~V~~G~IIVRQRGtkfhPG~NVg~GrD~TLfAlv~G~V~F 123 (192)
-|.+-.|+.|.+|++|+.---.+. ..+|.|+.+|+|.-
T Consensus 20 ~~~v~~G~~V~~G~~l~~ie~~k~----------~~~i~Ap~~G~v~~ 57 (77)
T 2l5t_A 20 RWDVKEGDMVEKDQDLVEVMTDKV----------TVKIPSPVRGKIVK 57 (77)
T ss_dssp ECSCCTTCEECSCCCCCEEESSSC----------EEECCCCCCEEEEE
T ss_pred EEEeCCCCEECCCCEEEEEEccce----------EEEEECCCCEEEEE
Confidence 345568999999999998655443 47899999999874
No 25
>2lmc_B DNA-directed RNA polymerase subunit beta; transferase, transcription; NMR {Escherichia coli k-12}
Probab=62.02 E-value=4.8 Score=29.34 Aligned_cols=31 Identities=26% Similarity=0.530 Sum_probs=22.6
Q ss_pred ccccEEeeeceEEEEEEeCCCcEEEEEEeCC
Q 029509 109 KDHTIFSLIDGLVKFEKFGPDRKQISVYPRE 139 (192)
Q Consensus 109 rD~TLfAlv~G~V~F~k~~~~r~~VsV~p~~ 139 (192)
|+..+.|-++|+|.|.+...+++.|.|.|.+
T Consensus 22 K~~AiIaEi~G~V~i~~~~k~~r~i~I~~~d 52 (84)
T 2lmc_B 22 KEPAILAEISGIVSFGKETKGKRRLVITPVD 52 (84)
T ss_dssp --CCBSBSSSEEEEEECCSSSCCEEEEEESS
T ss_pred CCCEEeecCccEEEEeEecCCcEEEEEEECC
Confidence 5677899999999998744566677777753
No 26
>2dn8_A Acetyl-COA carboxylase 2; biotin required enzyme, transcarboxylase, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=59.13 E-value=7.1 Score=27.65 Aligned_cols=36 Identities=17% Similarity=0.053 Sum_probs=29.1
Q ss_pred eeeeCCeEeecCcEeeeccCCeEecCCCeeecccccEEeeeceEEE
Q 029509 77 VKIFGDQVAKPGAIIVRQRGTKFHPGKNVGLGKDHTIFSLIDGLVK 122 (192)
Q Consensus 77 vK~~~Gq~V~~G~IIVRQRGtkfhPG~NVg~GrD~TLfAlv~G~V~ 122 (192)
|.+-.|+.|++|+.|+.---.|. .++|.|+.+|+|.
T Consensus 31 ~~v~~Gd~V~~Gq~L~~le~~k~----------~~~i~Ap~~G~V~ 66 (100)
T 2dn8_A 31 YTVEDGGHVEAGSSYAEMEVMKM----------IMTLNVQERGRVK 66 (100)
T ss_dssp ESSCTTEEECTTCEEEEEEETTE----------EEEEECSSSEEEE
T ss_pred EEcCCcCEECCCCEEEEEEecce----------EEEEEcCCCEEEE
Confidence 45568999999999998654332 5789999999998
No 27
>2k7v_A Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase...; misfolded dimer, acyltransferase, glycolysis; NMR {Escherichia coli}
Probab=55.60 E-value=2.1 Score=29.38 Aligned_cols=38 Identities=16% Similarity=0.153 Sum_probs=30.3
Q ss_pred ceeeeCCeEeecCcEeeeccCCeEecCCCeeecccccEEeeeceEEEE
Q 029509 76 GVKIFGDQVAKPGAIIVRQRGTKFHPGKNVGLGKDHTIFSLIDGLVKF 123 (192)
Q Consensus 76 GvK~~~Gq~V~~G~IIVRQRGtkfhPG~NVg~GrD~TLfAlv~G~V~F 123 (192)
-|.+-.|+.|.+|++|+.---.+ ..++|.|+.+|+|.-
T Consensus 15 ~~~v~~Gd~V~~G~~L~~ie~~k----------~~~~i~Ap~~G~V~~ 52 (85)
T 2k7v_A 15 EVMVKVGDKVAAEQSLITVEGDK----------ASMEVPAPFAGVVKE 52 (85)
T ss_dssp SCCCSSSCCCCCSSSCCCCSCCC----------SEEEEECSSCBCCCE
T ss_pred EEEcCCCCEEcCCCEEEEEEccc----------cEEEEECCCCEEEEE
Confidence 35566899999999999865544 368899999999863
No 28
>2k32_A A; NMR {Campylobacter jejuni} PDB: 2k33_A*
Probab=55.04 E-value=7.8 Score=27.60 Aligned_cols=19 Identities=11% Similarity=0.024 Sum_probs=15.4
Q ss_pred eeeeCCeEeecCcEeeecc
Q 029509 77 VKIFGDQVAKPGAIIVRQR 95 (192)
Q Consensus 77 vK~~~Gq~V~~G~IIVRQR 95 (192)
+.+-.|+.|++|++|++-.
T Consensus 15 v~v~~G~~V~~Gq~L~~ld 33 (116)
T 2k32_A 15 KLFKAGDKVKKGQTLFIIE 33 (116)
T ss_dssp ECSCTTSEECTTCEEEEEE
T ss_pred EECCCcCEECCCCEEEEEC
Confidence 4456899999999999844
No 29
>2nn6_G Exosome complex exonuclease RRP40; RNA, exosome, PM/SCL, phosphorolytic, hydrolase/transferase complex; 3.35A {Homo sapiens} SCOP: b.40.4.5 b.84.4.2 d.51.1.1
Probab=54.22 E-value=15 Score=31.89 Aligned_cols=57 Identities=16% Similarity=0.229 Sum_probs=31.2
Q ss_pred CeEeecCcEeeecc-----C----------------CeEec--CCCeeecccccEEeeeceEEEEEEeC--CCcEEEEEE
Q 029509 82 DQVAKPGAIIVRQR-----G----------------TKFHP--GKNVGLGKDHTIFSLIDGLVKFEKFG--PDRKQISVY 136 (192)
Q Consensus 82 Gq~V~~G~IIVRQR-----G----------------tkfhP--G~NVg~GrD~TLfAlv~G~V~F~k~~--~~r~~VsV~ 136 (192)
++.|.||+.|.-.- + -.|.+ |.++.. .+..|||.+.|.|.+.... .....++|.
T Consensus 39 ~~iVlPGD~L~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~G~Gty~-~~~~I~as~aG~l~~~~~~~~~~~~~v~V~ 117 (289)
T 2nn6_G 39 GQVVLPGEELLLPEQEDAEGPGGAVERPLSLNARACSRVRVVCGPGLRR-CGDRLLVTKCGRLRHKEPGSGSGGGVYWVD 117 (289)
T ss_dssp SSBCCSSEEECCSCSCCEECSSEEECC------------------------CCCEEECSCCEEEEECCTTTSSCCEEEEE
T ss_pred CcEEeCCCCcCccccccccccccccccccccccccCcceEEccCCCeEE-ECCEEEEEEeEeEEeccCCccCccceEEEE
Confidence 67799999997542 1 16777 887765 4778999999999876321 011367777
Q ss_pred eCC
Q 029509 137 PRE 139 (192)
Q Consensus 137 p~~ 139 (192)
|..
T Consensus 118 ~~~ 120 (289)
T 2nn6_G 118 SQQ 120 (289)
T ss_dssp CCC
T ss_pred ecC
Confidence 754
No 30
>3crk_C Dihydrolipoyllysine-residue acetyltransferase COM pyruvate dehydrogenase complex,...; pyruvate dehydrogenase kinase isozyme 2, glucos metabolism; HET: LA2; 2.30A {Homo sapiens} PDB: 3crl_C*
Probab=51.90 E-value=11 Score=25.83 Aligned_cols=42 Identities=7% Similarity=-0.052 Sum_probs=32.2
Q ss_pred CcccceeeeCCeEeecCcEeeeccCCeEecCCCeeecccccEEeeeceEEEE
Q 029509 72 GQRLGVKIFGDQVAKPGAIIVRQRGTKFHPGKNVGLGKDHTIFSLIDGLVKF 123 (192)
Q Consensus 72 ~KrLGvK~~~Gq~V~~G~IIVRQRGtkfhPG~NVg~GrD~TLfAlv~G~V~F 123 (192)
++=.-|.+-.|+.|.+|+.|+.---.|. .+.|.|..+|+|.-
T Consensus 20 G~v~~~~v~~Gd~V~~G~~l~~ie~~k~----------~~~i~Ap~~G~v~~ 61 (87)
T 3crk_C 20 GTVQRWEKKVGEKLSEGDLLAEIETDXA----------TIGFEVQEEGYLAK 61 (87)
T ss_dssp EEEEEECSCTTCEECTTCEEEEEECSSC----------EEEEECCSCEEEEE
T ss_pred EEEEEEEcCCCCEEcCCCEEEEEECCcc----------cceeecCcCcEEEE
Confidence 3344466778999999999998655442 47899999999874
No 31
>2kcc_A Acetyl-COA carboxylase 2; biotinoyl domain, BCCP, BIRA, biotinylation, alternative splicing, ATP-binding, biotin, fatty acid biosynthesis, ligase; NMR {Homo sapiens}
Probab=50.49 E-value=13 Score=25.56 Aligned_cols=38 Identities=16% Similarity=0.060 Sum_probs=29.6
Q ss_pred ceeeeCCeEeecCcEeeeccCCeEecCCCeeecccccEEeeeceEEEE
Q 029509 76 GVKIFGDQVAKPGAIIVRQRGTKFHPGKNVGLGKDHTIFSLIDGLVKF 123 (192)
Q Consensus 76 GvK~~~Gq~V~~G~IIVRQRGtkfhPG~NVg~GrD~TLfAlv~G~V~F 123 (192)
-|.+-.|+.|.+|+.|+.---.| -...|.|..+|+|..
T Consensus 18 ~~~v~~Gd~V~~G~~l~~ie~~k----------~~~~i~Ap~~G~v~~ 55 (84)
T 2kcc_A 18 QYTVEDGGHVEAGSSYAEMEVMK----------MIMTLNVQERGRVKY 55 (84)
T ss_dssp EESSCTTEEECTTCEEEEEECSS----------CEEEEECSSSEEEEE
T ss_pred EEECCCCCEECCCCEEEEEEecc----------eeEEEECCCCEEEEE
Confidence 35556899999999999865433 247899999999875
No 32
>1gjx_A Pyruvate dehydrogenase; oxidoreductase, lipoyl domain, dihydrolipoyl dehydrogenase, multienzyme complex, post-translational modification; NMR {Neisseria meningitidis} SCOP: b.84.1.1
Probab=48.83 E-value=3.7 Score=27.55 Aligned_cols=38 Identities=13% Similarity=0.179 Sum_probs=29.1
Q ss_pred cceeeeCCeEeecCcEeeeccCCeEecCCCeeecccccEEeeeceEEE
Q 029509 75 LGVKIFGDQVAKPGAIIVRQRGTKFHPGKNVGLGKDHTIFSLIDGLVK 122 (192)
Q Consensus 75 LGvK~~~Gq~V~~G~IIVRQRGtkfhPG~NVg~GrD~TLfAlv~G~V~ 122 (192)
.-|.+-.|+.|.+|++|+.---.|. .++|.|+.+|+|.
T Consensus 19 ~~~~v~~Gd~V~~G~~l~~ie~~k~----------~~~i~Ap~~G~v~ 56 (81)
T 1gjx_A 19 IAVEVNVGDTIAVDDTLITLETDKA----------TMDVPAEVAGVVK 56 (81)
T ss_dssp EEECCCSSCBCCSSCCCEEEECSSC----------EEEECCCCSSBBC
T ss_pred EEEEcCCCCEECCCCEEEEEEeCCc----------EEEEECCCCEEEE
Confidence 3355568999999999998654432 5789999999976
No 33
>3lu0_D DNA-directed RNA polymerase subunit beta'; E. coli RNA polymerase, nucleotidyltransferase, transcription, transferase; 11.20A {Escherichia coli} PDB: 3iyd_D*
Probab=46.38 E-value=7.2 Score=40.89 Aligned_cols=59 Identities=17% Similarity=0.254 Sum_probs=39.6
Q ss_pred eeCCeEeecCcEeeec--cCCeEecCCCe------------eecccccEEeeeceEEEEEEeCCCcEEEEEEeCC
Q 029509 79 IFGDQVAKPGAIIVRQ--RGTKFHPGKNV------------GLGKDHTIFSLIDGLVKFEKFGPDRKQISVYPRE 139 (192)
Q Consensus 79 ~~~Gq~V~~G~IIVRQ--RGtkfhPG~NV------------g~GrD~TLfAlv~G~V~F~k~~~~r~~VsV~p~~ 139 (192)
+.+|+.|.+|+||+|= -..|- .+=+ --=||..+.|-++|+|.|.+..++++.|-|.|.+
T Consensus 1109 v~~g~~v~~g~vlakip~~~~k~--~DIt~GLprv~eLfEar~pk~~a~i~ei~G~v~~~~~~~~~~~~~i~~~~ 1181 (1407)
T 3lu0_D 1109 LEDGVQISSGDTLARIPQESGGT--KDITGGLPRVADLFEARRPKEPAILAEISGIVSFGKETKGKRRLVITPVD 1181 (1407)
T ss_dssp CCSSCEECTTCEEECCCCCCCCS--SCCCCSHHHHHHHHTTCCCSSCCCCCSSCSCCEECCCCSSCEEEECCCSS
T ss_pred ecCCCEeccCceEEecchhhccc--cchhcCcHHHHHHHhccCCCCceEEeccceEEEEeeccCCceEEEEEeCC
Confidence 4589999999999972 22111 1111 1125788999999999997765666667676653
No 34
>2jku_A Propionyl-COA carboxylase alpha chain, mitochondrial; ligase, biotin, ATP-binding, disease mutation, nucleotide-binding, mitochondrion; HET: PG4; 1.50A {Homo sapiens}
Probab=46.29 E-value=5.5 Score=28.05 Aligned_cols=37 Identities=19% Similarity=0.169 Sum_probs=16.0
Q ss_pred eeeeCCeEeecCcEeeeccCCeEecCCCeeecccccEEeeeceEEEE
Q 029509 77 VKIFGDQVAKPGAIIVRQRGTKFHPGKNVGLGKDHTIFSLIDGLVKF 123 (192)
Q Consensus 77 vK~~~Gq~V~~G~IIVRQRGtkfhPG~NVg~GrD~TLfAlv~G~V~F 123 (192)
+.+-.|+.|.+|++|+.---.+. ..+|.|+.+|+|.-
T Consensus 39 ~~v~~Gd~V~~Gq~L~~ie~~k~----------~~~i~AP~~G~V~~ 75 (94)
T 2jku_A 39 VSVKPGDAVAEGQEICVIEAMKM----------QNSMTAGKTGTVKS 75 (94)
T ss_dssp ECCCTTCCCCTTCCCEEEEC---------------------------
T ss_pred EECCCCCEEcCCCEEEEEecccc----------cEEEECCCCEEEEE
Confidence 45568999999999998654332 46799999999863
No 35
>2dnc_A Pyruvate dehydrogenase protein X component; lipoic acid, lipoyl domain, 2-oxoacid dehydrogenase, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=40.74 E-value=19 Score=25.69 Aligned_cols=41 Identities=12% Similarity=0.024 Sum_probs=31.7
Q ss_pred cccceeeeCCeEeecCcEeeeccCCeEecCCCeeecccccEEeeeceEEEE
Q 029509 73 QRLGVKIFGDQVAKPGAIIVRQRGTKFHPGKNVGLGKDHTIFSLIDGLVKF 123 (192)
Q Consensus 73 KrLGvK~~~Gq~V~~G~IIVRQRGtkfhPG~NVg~GrD~TLfAlv~G~V~F 123 (192)
+=.=|.+-.|+.|.+|++|+.---.| -.+.|-|..+|+|.-
T Consensus 23 ~i~~~~v~~Gd~V~~G~~L~~ie~~K----------~~~~i~Ap~~G~v~~ 63 (98)
T 2dnc_A 23 NIVKWLKKEGEAVSAGDALCEIETDK----------AVVTLDASDDGILAK 63 (98)
T ss_dssp CEEEESSCTTCEECTTSEEEEEECSS----------CEEEEECSSCEEEEE
T ss_pred EEEEEEcCCCCEeCCCCEEEEEEccc----------ceeEEeCCCCEEEEE
Confidence 34446677899999999999865544 257899999999874
No 36
>2dne_A Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase...; lipoyl domain, lipoic acid, 2-oxoacid dehydrogenase; NMR {Homo sapiens}
Probab=33.75 E-value=25 Score=25.59 Aligned_cols=42 Identities=14% Similarity=0.030 Sum_probs=31.9
Q ss_pred CcccceeeeCCeEeecCcEeeeccCCeEecCCCeeecccccEEeeeceEEEE
Q 029509 72 GQRLGVKIFGDQVAKPGAIIVRQRGTKFHPGKNVGLGKDHTIFSLIDGLVKF 123 (192)
Q Consensus 72 ~KrLGvK~~~Gq~V~~G~IIVRQRGtkfhPG~NVg~GrD~TLfAlv~G~V~F 123 (192)
++=.-|.+-.|+.|.+|++|+.---.| -.+.|.|..+|+|.-
T Consensus 22 G~v~~~~v~~Gd~V~~G~~L~~iE~~K----------~~~~i~Ap~~G~V~~ 63 (108)
T 2dne_A 22 GTIARWEKKEGDKINEGDLIAEVETDK----------ATVGFESLEECYMAK 63 (108)
T ss_dssp EEEEECSSCTTCEECTTSEEEEEECSS----------CEEEEECSSSEEEEE
T ss_pred EEEEEEEcCCCCEecCCCEEEEEEcCc----------ceeEEeCCCCEEEEE
Confidence 334446667899999999999865544 257899999999874
No 37
>1k8m_A E2 component of branched-chain ahpha-ketoacid dehydrogenase; lipoyl acid bearing, human BCKD, experimental DATA, average structure, transferase; NMR {Homo sapiens} SCOP: b.84.1.1 PDB: 1k8o_A
Probab=33.65 E-value=19 Score=25.31 Aligned_cols=42 Identities=19% Similarity=0.032 Sum_probs=31.4
Q ss_pred CcccceeeeCCeEeecCcEeeeccCCeEecCCCeeecccccEEeeeceEEEE
Q 029509 72 GQRLGVKIFGDQVAKPGAIIVRQRGTKFHPGKNVGLGKDHTIFSLIDGLVKF 123 (192)
Q Consensus 72 ~KrLGvK~~~Gq~V~~G~IIVRQRGtkfhPG~NVg~GrD~TLfAlv~G~V~F 123 (192)
++=.-|.+-.|+.|.+|+.|+.---.|. ...|.|..+|+|.-
T Consensus 19 G~v~~~~v~~Gd~V~~G~~l~~ie~~K~----------~~~i~Ap~~G~V~~ 60 (93)
T 1k8m_A 19 VTVKEWYVKEGDTVSQFDSICEVQSDKA----------SVTITSRYDGVIKK 60 (93)
T ss_dssp EEEEEECCCTTCEECSSSCCEEEECSSC----------EEECCCSSCEEEEE
T ss_pred EEEEEEEcCCcCEECCCCEEEEEEcCCc----------EEEEEcCCCEEEEE
Confidence 3344466678999999999998654442 37789999999873
No 38
>1pmr_A Dihydrolipoyl succinyltransferase; 2-oxoglutarate dehydrogenase, lipoyl domain, complex, glycolysis; NMR {Escherichia coli} SCOP: b.84.1.1
Probab=33.33 E-value=6.8 Score=26.40 Aligned_cols=39 Identities=10% Similarity=0.043 Sum_probs=29.5
Q ss_pred ccceeeeCCeEeecCcEeeeccCCeEecCCCeeecccccEEeeeceEEE
Q 029509 74 RLGVKIFGDQVAKPGAIIVRQRGTKFHPGKNVGLGKDHTIFSLIDGLVK 122 (192)
Q Consensus 74 rLGvK~~~Gq~V~~G~IIVRQRGtkfhPG~NVg~GrD~TLfAlv~G~V~ 122 (192)
=.-|.+-.|+.|.+|+.|+.---.|. .+.|.|+.+|+|.
T Consensus 19 v~~~~v~~Gd~V~~G~~l~~ie~~k~----------~~~i~Ap~~G~v~ 57 (80)
T 1pmr_A 19 VATWHKKPGDAVVRDEVLVEIETDKV----------VLEVPASADGILD 57 (80)
T ss_dssp CCBCCCCTTCCBSSSCCBCBCCSSSC----------CCCCBCCSBCCCC
T ss_pred EEEEECCCcCEECCCCEEEEEEccce----------EEEEECCCCEEEE
Confidence 33456668999999999998655442 4788899999875
No 39
>1y8o_B Dihydrolipoyllysine-residue acetyltransferase COM pyruvate dehydrogenase complex; pyruvate dehydrogenase kinase 3, lipoyl-bearing domain; HET: RED ADP; 2.48A {Homo sapiens} SCOP: b.84.1.1 PDB: 1y8n_B* 1y8p_B* 2pnr_C* 2q8i_B* 1fyc_A
Probab=26.23 E-value=47 Score=25.27 Aligned_cols=42 Identities=10% Similarity=-0.021 Sum_probs=32.6
Q ss_pred CcccceeeeCCeEeecCcEeeeccCCeEecCCCeeecccccEEeeeceEEEE
Q 029509 72 GQRLGVKIFGDQVAKPGAIIVRQRGTKFHPGKNVGLGKDHTIFSLIDGLVKF 123 (192)
Q Consensus 72 ~KrLGvK~~~Gq~V~~G~IIVRQRGtkfhPG~NVg~GrD~TLfAlv~G~V~F 123 (192)
++=.-|.+-.|+.|.+|++|+.---.|. .+.|.|..+|+|.-
T Consensus 42 G~V~~~~V~~Gd~V~~Gd~L~~iEa~K~----------~~~I~Ap~~G~V~~ 83 (128)
T 1y8o_B 42 GTVQRWEKKVGEKLSEGDLLAEIETDKA----------TIGFEVQEEGYLAK 83 (128)
T ss_dssp EEEEEECSCTTCEECTTCEEEEEECSSC----------EEEEECCSCEEEEE
T ss_pred EEEEEEecCCCCEecCCCEEEEEEcCcc----------eeEEeCCCCeEEEE
Confidence 3445577778999999999998665542 47899999999863
No 40
>3lu0_D DNA-directed RNA polymerase subunit beta'; E. coli RNA polymerase, nucleotidyltransferase, transcription, transferase; 11.20A {Escherichia coli} PDB: 3iyd_D*
Probab=24.40 E-value=46 Score=35.10 Aligned_cols=36 Identities=14% Similarity=0.374 Sum_probs=26.6
Q ss_pred eeeCCeEeecCcEeeeccCCeEecCCCeeecccccEEeeeceEEEEEE
Q 029509 78 KIFGDQVAKPGAIIVRQRGTKFHPGKNVGLGKDHTIFSLIDGLVKFEK 125 (192)
Q Consensus 78 K~~~Gq~V~~G~IIVRQRGtkfhPG~NVg~GrD~TLfAlv~G~V~F~k 125 (192)
.+-+||+|++|++|+ .|.| -.+.|.|-++|+|+|+.
T Consensus 1004 ~v~~g~~V~~g~~ia-----~wDp-------~~~piise~~G~v~f~d 1039 (1407)
T 3lu0_D 1004 AKGDGEQVAGGETVA-----NWDP-------HTMPVITEVSGFVRFTD 1039 (1407)
T ss_dssp SSCSSCEECTTCEEE-----ECCS-------SCCCEECSSCEEEEEES
T ss_pred EEcCCCEecCCCEEE-----EEec-------CceeEEeccceEEEEee
Confidence 345777777777776 3555 25679999999999964
No 41
>2qj8_A MLR6093 protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, hydrolase; HET: MSE; 2.00A {Mesorhizobium loti}
Probab=24.08 E-value=59 Score=27.44 Aligned_cols=39 Identities=8% Similarity=-0.134 Sum_probs=28.3
Q ss_pred CCeEeecCcEeeeccCCeEecCCCeeecccccEEeeeceEEEEEE
Q 029509 81 GDQVAKPGAIIVRQRGTKFHPGKNVGLGKDHTIFSLIDGLVKFEK 125 (192)
Q Consensus 81 ~Gq~V~~G~IIVRQRGtkfhPG~NVg~GrD~TLfAlv~G~V~F~k 125 (192)
-|+.|.+|++|.++.-. +.+|+. -..|.|..+|.|-+-.
T Consensus 274 ~g~~V~~G~~la~i~dp-~~~G~~-----~~~v~Ap~dGiv~~~~ 312 (332)
T 2qj8_A 274 VMDEVEQGDVVGVLHPM-GSLSAA-----SIDIRAQSKSTVFAIR 312 (332)
T ss_dssp TTCEECTTCEEEEEECT-TCSSSC-----CEEEECSSSEEEEEEE
T ss_pred CCCEeCCCCEEEEEECC-CCCCCe-----eEEEEeCCCeEEEEEe
Confidence 48888888888887543 224431 2579999999998865
No 42
>3cdx_A Succinylglutamatedesuccinylase/aspartoacylase; structural genomics, PSI-2, protein structure initiative; 2.10A {Rhodobacter sphaeroides 2}
Probab=20.78 E-value=1.9e+02 Score=24.71 Aligned_cols=53 Identities=11% Similarity=-0.012 Sum_probs=32.3
Q ss_pred eeCCeEeecCcEeeeccCCeEecCCCeeecccccEEeeeceEEEEEEe----CCCcEEEEEEe
Q 029509 79 IFGDQVAKPGAIIVRQRGTKFHPGKNVGLGKDHTIFSLIDGLVKFEKF----GPDRKQISVYP 137 (192)
Q Consensus 79 ~~~Gq~V~~G~IIVRQRGtkfhPG~NVg~GrD~TLfAlv~G~V~F~k~----~~~r~~VsV~p 137 (192)
+-.||.|.+|++|.+..-. +.+|+ .-..++|..+|.|.+-.. .+....+.|..
T Consensus 282 ~~~g~~V~~G~~La~i~d~-~~~g~-----~~~~v~Ap~dG~v~~~~~~~~V~~Gd~l~~ia~ 338 (354)
T 3cdx_A 282 HYVGEEVRTGETAGWIHFV-EDVDT-----APLELLYRRDGIVWFGAGPGRVTRGDAVAVVME 338 (354)
T ss_dssp CCTTCEECTTSEEEEEECT-TSSSC-----CCEEEECCSCEEEEEEECSSEECTTCEEEEEEE
T ss_pred CCCCCEeCCCCEEEEEECC-CCCCC-----eeEEEEcCCCeEEEEEeCCCccCCCCEEEEEee
Confidence 3468888888888765410 00121 237899999999988653 23444444443
No 43
>3dn7_A Cyclic nucleotide binding regulatory protein; structural genomics, APC88869, cyclic nucleotide binding REG protein, PSI-2; 1.80A {Cytophaga hutchinsonii}
Probab=20.14 E-value=2.5e+02 Score=20.16 Aligned_cols=34 Identities=6% Similarity=0.191 Sum_probs=22.9
Q ss_pred eEeecCcEeeeccCCeEecCCCeeecccccEEeeeceEEEEEEeCC
Q 029509 83 QVAKPGAIIVRQRGTKFHPGKNVGLGKDHTIFSLIDGLVKFEKFGP 128 (192)
Q Consensus 83 q~V~~G~IIVRQRGtkfhPG~NVg~GrD~TLfAlv~G~V~F~k~~~ 128 (192)
..+.+|++|++| |+- .+.+|-+.+|.|+..+..+
T Consensus 33 ~~~~~g~~l~~~-------G~~-----~~~~y~i~~G~v~~~~~~~ 66 (194)
T 3dn7_A 33 KKVRKKETLLKT-------GEI-----CRINYFVVKGCLRLFFIDE 66 (194)
T ss_dssp EEECTTCEEECT-------TSB-----CCEEEEEEESEEEEEEECT
T ss_pred EEEcCCCEEECC-------CCe-----eeEEEEeecCeEEEEEECC
Confidence 356677777765 321 2568889999998877533
Done!