RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= 029509
(192 letters)
>d2zjrt1 b.84.4.1 (T:2-85) Ribosomal protein L27 {Deinococcus
radiodurans [TaxId: 1299]}
Length = 84
Score = 140 bits (354), Expect = 2e-44
Identities = 47/84 (55%), Positives = 59/84 (70%)
Query: 56 AHKKGAGSTKNGRDSRGQRLGVKIFGDQVAKPGAIIVRQRGTKFHPGKNVGLGKDHTIFS 115
AHKKG GS+KNGRDS + LGVK FG +V K G I+VRQRGTKF G+ VG+G+DHT+F+
Sbjct: 1 AHKKGVGSSKNGRDSNPKYLGVKKFGGEVVKAGNILVRQRGTKFKAGQGVGMGRDHTLFA 60
Query: 116 LIDGLVKFEKFGPDRKQISVYPRE 139
L DG V F G + IS+ +
Sbjct: 61 LSDGKVVFINKGKGARFISIEAAQ 84
>d2gycu1 b.84.4.1 (U:1-84) Ribosomal protein L27 {Escherichia coli
[TaxId: 562]}
Length = 84
Score = 132 bits (335), Expect = 1e-41
Identities = 52/83 (62%), Positives = 61/83 (73%), Gaps = 1/83 (1%)
Query: 56 AHKKGAGSTKNGRDSRGQRLGVKIFGDQVAKPGAIIVRQRGTKFHPGKNVGLGKDHTIFS 115
AHKK GST+NGRDS +RLGVK FG + G+IIVRQRGTKFH G NVG G+DHT+F+
Sbjct: 1 AHKKAGGSTRNGRDSEAKRLGVKRFGGESVLAGSIIVRQRGTKFHAGANVGCGRDHTLFA 60
Query: 116 LIDGLVKFEKFGP-DRKQISVYP 137
DG VKFE GP +RK IS+
Sbjct: 61 KADGKVKFEVKGPKNRKFISIEA 83
>d1v8qa_ b.84.4.1 (A:) Ribosomal protein L27 {Thermus thermophilus
[TaxId: 274]}
Length = 66
Score = 113 bits (285), Expect = 4e-34
Identities = 34/64 (53%), Positives = 48/64 (75%)
Query: 74 RLGVKIFGDQVAKPGAIIVRQRGTKFHPGKNVGLGKDHTIFSLIDGLVKFEKFGPDRKQI 133
RLGVK + QV + G I+VRQRGT+F PGKNVG+G+D T+F+L+DG+V+F+ G + +
Sbjct: 1 RLGVKRYEGQVVRAGNILVRQRGTRFKPGKNVGMGRDFTLFALVDGVVEFQDRGRLGRYV 60
Query: 134 SVYP 137
V P
Sbjct: 61 HVRP 64
>d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus)
[TaxId: 9913]}
Length = 169
Score = 28.5 bits (62), Expect = 0.41
Identities = 8/32 (25%), Positives = 15/32 (46%), Gaps = 1/32 (3%)
Query: 139 EVQPENPNSYRARKREYFRLQREKKKARKEAY 170
E+ PE+ + +++ +K K K AY
Sbjct: 139 EIAPEDKAIQAELLKVKQKIKAQKDKE-KAAY 169
>d2bona1 e.52.1.2 (A:5-299) Lipid kinase YegS {Escherichia coli
[TaxId: 562]}
Length = 295
Score = 27.6 bits (60), Expect = 0.89
Identities = 6/19 (31%), Positives = 9/19 (47%)
Query: 31 DFTVCPKSVTVSLPPTSPL 49
+ P ++ LPP PL
Sbjct: 275 HIEILPAALRCRLPPDCPL 293
>d2pbka1 b.57.1.1 (A:3-230) KSHV protease {Kaposi's
sarcoma-associated herpesvirus [TaxId: 37296]}
Length = 228
Score = 27.4 bits (61), Expect = 0.91
Identities = 13/26 (50%), Positives = 14/26 (53%), Gaps = 2/26 (7%)
Query: 36 PKSVTVSLPPTSPLPLTIESAHKKGA 61
P VT LP T PLP+TIE H
Sbjct: 25 PDQVTDYLPVTEPLPITIE--HLPET 48
>d1acoa2 c.83.1.1 (A:2-528) Aconitase A, N-terminal domain {Cow (Bos
taurus) [TaxId: 9913]}
Length = 527
Score = 27.4 bits (60), Expect = 1.1
Identities = 6/23 (26%), Positives = 11/23 (47%)
Query: 160 REKKKARKEAYLAQPQLVLASAL 182
R A++ P++V A A+
Sbjct: 451 RNDANPETHAFVTSPEIVTALAI 473
>d1at3a_ b.57.1.1 (A:) HSV-2 protease {Herpes simplex virus type 2
[TaxId: 10310]}
Length = 231
Score = 26.6 bits (59), Expect = 1.6
Identities = 10/32 (31%), Positives = 19/32 (59%), Gaps = 2/32 (6%)
Query: 30 GDFTVCPKSVTVSLPPTSPLPLTIESAHKKGA 61
G+ + P +V +LPP +PLP+ ++ H+
Sbjct: 20 GELALDPDTVRAALPPENPLPINVD--HRARC 49
>d1o6ea_ b.57.1.1 (A:) Epstein-Barr virus protease {Human
herpesvirus 4 [TaxId: 10376]}
Length = 232
Score = 26.6 bits (59), Expect = 1.6
Identities = 12/26 (46%), Positives = 14/26 (53%), Gaps = 2/26 (7%)
Query: 36 PKSVTVSLPPTSPLPLTIESAHKKGA 61
P +V LP PLPLT+E H A
Sbjct: 26 PLTVKSQLPLKKPLPLTVE--HLPDA 49
>d1vzva_ b.57.1.1 (A:) VZV protease {Varicella-Zoster virus
[TaxId: 10335]}
Length = 221
Score = 26.6 bits (59), Expect = 1.7
Identities = 11/26 (42%), Positives = 17/26 (65%), Gaps = 2/26 (7%)
Query: 36 PKSVTVSLPPTSPLPLTIESAHKKGA 61
P+ V +LPPTS +P+ I+ H+K
Sbjct: 23 PEIVRSALPPTSKIPINID--HRKDC 46
>d2jn6a1 a.4.1.19 (A:1-89) Uncharacterized protein Cgl2762
{Corynebacterium glutamicum [TaxId: 1718]}
Length = 89
Score = 24.9 bits (54), Expect = 2.8
Identities = 7/37 (18%), Positives = 16/37 (43%), Gaps = 1/37 (2%)
Query: 138 REVQPENPNSYRARKREYFRLQREKKKARKE-AYLAQ 173
VQ P++ + + +L++E R + A+
Sbjct: 51 HNVQGTTPSAAVSEAEQIRQLKKENALQRARTRHPAE 87
>d1g7oa1 a.45.1.1 (A:76-215) Glutaredoxin 2 {Escherichia coli
[TaxId: 562]}
Length = 140
Score = 25.0 bits (55), Expect = 4.7
Identities = 10/50 (20%), Positives = 18/50 (36%)
Query: 135 VYPREVQPENPNSYRARKREYFRLQREKKKARKEAYLAQPQLVLASALDD 184
+ PR + R+YF ++E LA ++ + DD
Sbjct: 26 LLPRFAKSAFDEFSTPAARKYFVDKKEASAGNFADLLAHSDGLIKNISDD 75
>d1p2za1 b.121.2.2 (A:5-650) Adenovirus hexon {Human adenovirus type
2 [TaxId: 10515]}
Length = 646
Score = 25.5 bits (56), Expect = 5.5
Identities = 8/23 (34%), Positives = 10/23 (43%), Gaps = 3/23 (13%)
Query: 130 RKQISVYPREVQPE-NPNSYRAR 151
R + P V E SY+AR
Sbjct: 58 RLTLRFIP--VDREDTAYSYKAR 78
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.315 0.132 0.376
Gapped
Lambda K H
0.267 0.0683 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 661,850
Number of extensions: 29879
Number of successful extensions: 61
Number of sequences better than 10.0: 1
Number of HSP's gapped: 61
Number of HSP's successfully gapped: 19
Length of query: 192
Length of database: 2,407,596
Length adjustment: 80
Effective length of query: 112
Effective length of database: 1,309,196
Effective search space: 146629952
Effective search space used: 146629952
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 50 (23.1 bits)