BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 029510
(192 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q08201|MDR3_RAT Multidrug resistance protein 3 OS=Rattus norvegicus GN=Abcb4 PE=1
SV=1
Length = 1278
Score = 35.0 bits (79), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 26/101 (25%), Positives = 46/101 (45%), Gaps = 7/101 (6%)
Query: 39 TNPYIYKQLLEINSVDLIAKGNSDISSRQSAANKFLDKVFRVRLGRGFYGECLGVRADGN 98
T I +L + + D+IA + Q + ++ + K G Y + ++ G+
Sbjct: 580 TTIVIAHRLSTVRNADVIAGFEDGVIVEQGSHSELIKK-------EGIYFRLVNMQTSGS 632
Query: 99 SYLSDEIGKQLSARSAAAGLRPIGAVIYMQRNNLKMCLRST 139
LS+E +LS AA G+ P G + RN+ K L+S+
Sbjct: 633 QILSEEFEVELSDEKAAGGVAPNGWKARIFRNSTKKSLKSS 673
>sp|Q9RME2|SERC_BACAO Phosphoserine aminotransferase OS=Bacillus alcalophilus GN=serC
PE=1 SV=1
Length = 361
Score = 33.5 bits (75), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 23/61 (37%), Positives = 32/61 (52%), Gaps = 6/61 (9%)
Query: 17 SLPDINAFRIGLREWRSKLNCITNPYIY----KQLLEINSVDLIAKGNSDISSRQSAANK 72
S+PD + F+ L E + L+ +N IY + EIN LIA +SDI SR N+
Sbjct: 130 SIPDFSEFQ--LNENDAYLHITSNNTIYGTQYQNFPEINHAPLIADMSSDILSRPLKVNQ 187
Query: 73 F 73
F
Sbjct: 188 F 188
>sp|O31824|NRNB_BACSU Oligoribonuclease NrnB OS=Bacillus subtilis (strain 168) GN=nrnB
PE=1 SV=1
Length = 399
Score = 32.3 bits (72), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 24/89 (26%), Positives = 42/89 (47%), Gaps = 7/89 (7%)
Query: 87 YGECLGVRADGNSYLSDEIGKQLSARSAAAGLRPIGAVIYMQRNNLKMCLRSTDSATDTS 146
+ C+G+ SY S E+G +L + + + + + ++ LR+ D S
Sbjct: 220 HEHCVGI-VHAESYHS-ELGNRLGKDNP-----HLDYIAILSMGSKRVSLRTIHDYIDVS 272
Query: 147 EIAKAYGGGGSASSSSFIIRMDEYNQWLS 175
EIA YGGGG A +S I + Y +++
Sbjct: 273 EIAGRYGGGGHAKASGCSITDEVYELFVA 301
>sp|Q80YA8|CRUM2_MOUSE Protein crumbs homolog 2 OS=Mus musculus GN=Crb2 PE=2 SV=3
Length = 1282
Score = 32.3 bits (72), Expect = 2.2, Method: Composition-based stats.
Identities = 28/96 (29%), Positives = 46/96 (47%), Gaps = 8/96 (8%)
Query: 78 FRVRLGRGFYGECL-GVRADGNSYLSDEI-GKQLSARSAAAGLRPI-----GAVIYMQRN 130
+ + LG G + C VR +G+ L +E+ G L +P+ GA + + +
Sbjct: 571 YSIYLGGGVFAGCFQDVRVEGHLLLPEELKGTVLLGCERREPCQPLPCAHGGACVDLWTH 630
Query: 131 NLKMCLRSTDSATDTSEI-AKAYGGGGSASSSSFII 165
C R AT T E+ A +G GG+ SS+SF++
Sbjct: 631 FRCDCPRPYRGATCTDEVPAATFGLGGATSSASFLL 666
>sp|Q10301|YD48_SCHPO UPF0652 protein C22H10.08 OS=Schizosaccharomyces pombe (strain 972
/ ATCC 24843) GN=SPAC22H10.08 PE=3 SV=1
Length = 492
Score = 31.6 bits (70), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 39/85 (45%), Gaps = 14/85 (16%)
Query: 32 RSKLNCITNPYIYKQLLEINSVDLIAKGNS------DISSRQSAANKFLDKVFRVRLGRG 85
R LN + +PY EI +++++A+ S DI +++ A K + ++ +
Sbjct: 180 RDALNALEDPYA-----EIATMEIVAENRSRSAIQKDIKAKERAVEHIAKKYYSSKITKE 234
Query: 86 FYGECLGVRADGNSYL---SDEIGK 107
CL AD NSYL D I K
Sbjct: 235 KVRWCLYSIADSNSYLRYNRDPIAK 259
>sp|P21440|MDR3_MOUSE Multidrug resistance protein 3 OS=Mus musculus GN=Abcb4 PE=2 SV=2
Length = 1276
Score = 31.6 bits (70), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 26/100 (26%), Positives = 44/100 (44%), Gaps = 7/100 (7%)
Query: 39 TNPYIYKQLLEINSVDLIAKGNSDISSRQSAANKFLDKVFRVRLGRGFYGECLGVRADGN 98
T I +L I + D+IA + Q + ++ + K G Y + ++ G+
Sbjct: 580 TTIVIAHRLSTIRNADVIAGFEDGVIVEQGSHSELMKK-------EGIYFRLVNMQTAGS 632
Query: 99 SYLSDEIGKQLSARSAAAGLRPIGAVIYMQRNNLKMCLRS 138
LS+E +LS AA + P G + RN+ K L+S
Sbjct: 633 QILSEEFEVELSDEKAAGDVAPNGWKARIFRNSTKKSLKS 672
>sp|Q6UY14|ATL4_HUMAN ADAMTS-like protein 4 OS=Homo sapiens GN=ADAMTSL4 PE=1 SV=2
Length = 1074
Score = 31.2 bits (69), Expect = 4.7, Method: Composition-based stats.
Identities = 21/69 (30%), Positives = 31/69 (44%), Gaps = 11/69 (15%)
Query: 101 LSDEIGKQLSARSAAAGLRPIGA---------VIYMQRNNLKMCLRSTDSATDTSEIA-- 149
+S E G++L RS AAG RP + Y + C RS T ++
Sbjct: 692 ISRESGEELDERSCAAGARPPASPEPCHGTPCPPYWEAGEWTSCSRSCGPGTQHRQLQCR 751
Query: 150 KAYGGGGSA 158
+ +GGGGS+
Sbjct: 752 QEFGGGGSS 760
>sp|Q2SRI1|ECFA2_MYCCT Energy-coupling factor transporter ATP-binding protein EcfA 2
OS=Mycoplasma capricolum subsp. capricolum (strain
California kid / ATCC 27343 / NCTC 10154) GN=ecfA2 PE=3
SV=1
Length = 408
Score = 31.2 bits (69), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 45/184 (24%), Positives = 80/184 (43%), Gaps = 18/184 (9%)
Query: 5 LKYIEDMDLRRWSLPDINAFRIGLREWRSKLNCITNPYIYKQLLEINSVDLIAKGNSDIS 64
L E+ + ++ S D+ A I L + KLN + N Y+ L+ +++D K N I
Sbjct: 4 LAIFEEFNSKKISQDDLEATIISLNNYFVKLNDLNNQYL--NLIRQDNIDKSKKQNIKIQ 61
Query: 65 SRQS--AANKFL--DKVFR--VRLGRGFYGECLGVRADGNSYLSDEIGK-QLSARSAAAG 117
+ + NK + K+F+ ++L Y + +++ N D+I K QL +A +
Sbjct: 62 RKNTKIEINKIIATTKLFKQNIKLAESMYKK---IKSSNN---QDDIKKAQLEVDNAKSM 115
Query: 118 LRPIGAVIYMQRNNLKMCLRSTDSATDTSEIAKAYGG--GGSASSSSFIIRMDEYNQWLS 175
L I Q ++K+ + D A + ++ YG + SF I EY +
Sbjct: 116 LIQFKEAINGQGKSIKLK-KLNDVAIEIKNLSFKYGPEFPNAIDDVSFTINQGEYVTIIG 174
Query: 176 VNAS 179
N S
Sbjct: 175 HNGS 178
>sp|Q49ZG2|RS3_STAS1 30S ribosomal protein S3 OS=Staphylococcus saprophyticus subsp.
saprophyticus (strain ATCC 15305 / DSM 20229) GN=rpsC
PE=3 SV=1
Length = 217
Score = 31.2 bits (69), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 26/40 (65%)
Query: 28 LREWRSKLNCITNPYIYKQLLEINSVDLIAKGNSDISSRQ 67
+ + R+KLN +TN ++ ++EI VDL AK ++ +RQ
Sbjct: 83 IEKLRNKLNSLTNKKVHINVIEIKKVDLDAKLVAENIARQ 122
>sp|Q5IJ48|CRUM2_HUMAN Protein crumbs homolog 2 OS=Homo sapiens GN=CRB2 PE=1 SV=2
Length = 1285
Score = 30.4 bits (67), Expect = 7.0, Method: Composition-based stats.
Identities = 32/119 (26%), Positives = 54/119 (45%), Gaps = 9/119 (7%)
Query: 56 IAKGNSDISSRQSAANKFLDKVFRVRLGRGFYGECL-GVRADGNSYLSDEIGKQ-LSARS 113
+A G ++S SA + +LG + CL VR DG+ L +++G+ L
Sbjct: 546 VASGPVALASTASAT-PLPAGISSAQLGDATFAGCLQDVRVDGHLLLPEDLGENVLLGCE 604
Query: 114 AAAGLRPI-----GAVIYMQRNNLKMCLRSTDSATDTSEI-AKAYGGGGSASSSSFIIR 166
RP+ G+ + + + C R T EI A +G GG+ SS+SF+++
Sbjct: 605 RREQCRPLPCVHGGSCVDLWTHFRCDCARPHRGPTCADEIPAATFGLGGAPSSASFLLQ 663
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.320 0.134 0.398
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 67,684,789
Number of Sequences: 539616
Number of extensions: 2477794
Number of successful extensions: 6750
Number of sequences better than 100.0: 14
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 6746
Number of HSP's gapped (non-prelim): 14
length of query: 192
length of database: 191,569,459
effective HSP length: 111
effective length of query: 81
effective length of database: 131,672,083
effective search space: 10665438723
effective search space used: 10665438723
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 58 (26.9 bits)