Query 029510
Match_columns 192
No_of_seqs 144 out of 1045
Neff 6.4
Searched_HMMs 46136
Date Fri Mar 29 14:04:01 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029510.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/029510hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK14538 putative bifunctional 99.4 6.7E-13 1.5E-17 129.5 11.4 146 4-167 503-664 (838)
2 COG0618 Exopolyphosphatase-rel 99.2 7.9E-11 1.7E-15 104.2 10.5 46 129-175 270-318 (332)
3 COG2404 Predicted phosphohydro 99.2 2.9E-11 6.4E-16 106.4 5.9 152 1-163 136-306 (339)
4 PF02272 DHHA1: DHHA1 domain; 98.7 1.5E-08 3.3E-13 69.3 3.8 48 127-175 9-64 (68)
5 COG3887 Predicted signaling pr 98.1 9.4E-06 2E-10 76.5 6.8 37 129-166 596-632 (655)
6 TIGR00644 recJ single-stranded 97.9 0.00014 3E-09 68.5 11.2 69 99-174 336-412 (539)
7 PRK11070 ssDNA exonuclease Rec 97.2 0.0043 9.3E-08 59.2 11.1 69 99-174 365-444 (575)
8 COG0608 RecJ Single-stranded D 80.7 7.5 0.00016 36.2 7.8 45 129-174 334-386 (491)
9 PF06821 Ser_hydrolase: Serine 50.4 8.8 0.00019 30.7 1.3 41 134-175 118-170 (171)
10 PF03295 Pox_TAA1: Poxvirus tr 41.9 63 0.0014 22.0 4.2 19 121-139 43-62 (63)
11 PRK14869 putative manganese-de 33.3 2.3E+02 0.005 26.5 8.1 24 147-170 509-535 (546)
12 COG0618 Exopolyphosphatase-rel 26.6 56 0.0012 28.9 2.6 48 4-53 140-192 (332)
13 PF01795 Methyltransf_5: MraW 22.3 23 0.0005 31.5 -0.6 10 151-160 28-37 (310)
14 PF02229 PC4: Transcriptional 21.6 19 0.00042 23.6 -1.0 33 143-175 22-54 (56)
No 1
>PRK14538 putative bifunctional signaling protein/50S ribosomal protein L9; Provisional
Probab=99.43 E-value=6.7e-13 Score=129.46 Aligned_cols=146 Identities=13% Similarity=0.146 Sum_probs=92.4
Q ss_pred HHHHHHhCc-cccccCCCcHHHHHHH--hhcCCcccccCcHHHHH---HHHccChH-----HHHhcCcchHHhHHHHHHH
Q 029510 4 VLKYIEDMD-LRRWSLPDINAFRIGL--REWRSKLNCITNPYIYK---QLLEINSV-----DLIAKGNSDISSRQSAANK 72 (192)
Q Consensus 4 lv~~i~d~D-lwrf~~~~t~~i~a~L--~~~~fd~~~~~~~~~~~---~L~~~~~~-----~~~~~G~~l~~~~~~~i~~ 72 (192)
+.++++... -++.+...++.+++++ ||..|.+ .++|.+|+ .|.+.+++ .++ ...+.. .++...
T Consensus 503 V~Ell~~~~~~i~l~~~eAt~LyaGI~tDTg~F~~--~Tt~rTFeaAA~L~~~GAD~~~V~~~l--~~~l~~--~~l~~~ 576 (838)
T PRK14538 503 LVELMGFLEKEIHITAFEASIMYAGILIDTNAFIY--RTSSRTFEVASKLKDLGADAIEVKSWL--RKDFDK--VLEINK 576 (838)
T ss_pred HHHHHHHcCCCCCCCHHHHHHHHhHHHHHcCCccc--CCCHHHHHHHHHHHHcCCCHHHHHHHH--hCCHHH--HHHHHH
Confidence 445554433 1345556788899998 8999988 47788886 88887775 222 234444 555666
Q ss_pred HHhHHhhHhcCCceecceeeeecC--CCccchhHHHHHH-HHhhhccCCccceEEEEE-E-CCeEEEEEecCCCCCCHHH
Q 029510 73 FLDKVFRVRLGRGFYGECLGVRAD--GNSYLSDEIGKQL-SARSAAAGLRPIGAVIYM-Q-RNNLKMCLRSTDSATDTSE 147 (192)
Q Consensus 73 ~l~~a~~~~~g~~~~~~~l~v~~~--~~~~~~s~lg~~l-~~~~~~~~l~~~~~~~~~-~-~~~~~vslRS~~~~~~v~~ 147 (192)
++.+..... ++..+ ..... ......+.+.+.+ ..++.+. ++++. . ++.++||+||+++ +||+.
T Consensus 577 ll~~~ei~~-~~iAi----a~~~e~~~~~~~~a~~ad~Ll~I~gv~a------sfV~~e~~d~~i~ISaRS~g~-inVq~ 644 (838)
T PRK14538 577 LISKMEIFM-DRFAI----IKSEEIYDNRSFLAQVAESVLNIQNVDA------AFMIAKISDNTIAISARSYNE-INVQT 644 (838)
T ss_pred HHhccEEec-CcEEE----EEEhHHhhccchHHHHHHHHhcccCeeE------EEEEEEEcCCEEEEEEEeCCC-CCHHH
Confidence 676665432 22222 11111 1122235555555 4444322 23343 3 7779999999965 99999
Q ss_pred HHhhCCCCCcccccCcccCh
Q 029510 148 IAKAYGGGGSASSSSFIIRM 167 (192)
Q Consensus 148 iA~~~gGGGH~~AaG~~~~~ 167 (192)
||++||||||++|||+.++.
T Consensus 645 Iae~~GGGGH~~AAGaqi~~ 664 (838)
T PRK14538 645 IMEQMEGGGHLNSAATQIKG 664 (838)
T ss_pred HHHHhCCCccHhhheEEeCC
Confidence 99999999999999999754
No 2
>COG0618 Exopolyphosphatase-related proteins [General function prediction only]
Probab=99.21 E-value=7.9e-11 Score=104.20 Aligned_cols=46 Identities=26% Similarity=0.439 Sum_probs=38.7
Q ss_pred CCeEEEEEecCCCCCCHHHHHhhCCCCCcccccCcccCh---hhHHHHhh
Q 029510 129 RNNLKMCLRSTDSATDTSEIAKAYGGGGSASSSSFIIRM---DEYNQWLS 175 (192)
Q Consensus 129 ~~~~~vslRS~~~~~~v~~iA~~~gGGGH~~AaG~~~~~---~~~~~~~~ 175 (192)
++.+++++||++. .+|+++|..||||||+.|||++++. ++.++++.
T Consensus 270 ~~~~r~~~rs~~~-~~v~~~A~~~gGGGH~~AaG~~i~~~~~~~~~~l~~ 318 (332)
T COG0618 270 DGSIRVSDRSKGI-GNVNEIAFKFGGGGHALAAGARIPLGILESADDLLK 318 (332)
T ss_pred CceEEEecccCCc-HHHHHHHhhcCCCCCcccCeeEecccHHHHHHHHHH
Confidence 4489999999964 8999999999999999999999885 55554443
No 3
>COG2404 Predicted phosphohydrolase (DHH superfamily) [General function prediction only]
Probab=99.18 E-value=2.9e-11 Score=106.42 Aligned_cols=152 Identities=14% Similarity=0.171 Sum_probs=75.8
Q ss_pred ChhHHHHHHhCccccccCCCcHHHHHHH--hhcCCcccccC----c-HHHHHHHHccChH-------HHHhcCcchHHhH
Q 029510 1 MKMVLKYIEDMDLRRWSLPDINAFRIGL--REWRSKLNCIT----N-PYIYKQLLEINSV-------DLIAKGNSDISSR 66 (192)
Q Consensus 1 ~p~lv~~i~d~Dlwrf~~~~t~~i~a~L--~~~~fd~~~~~----~-~~~~~~L~~~~~~-------~~~~~G~~l~~~~ 66 (192)
+|.|++++++.|+|.|+.|....+..++ ...-|+.+.|. . ++.++-+-..... ..+.+. .+.+-.
T Consensus 136 ~~~lve~v~s~DiW~~e~~~~~~~~~~~~l~r~~~d~~~~~~~l~~~e~~~~~l~k~~~gi~~de~~~~~l~~-~~~~~~ 214 (339)
T COG2404 136 LEQLVELVRSVDIWLWEDYGLGMIPQGSELNRFMFDDNQWEYLLGDGEEYKDYLKKFNAGILWDEVLDYILQI-AVGRDK 214 (339)
T ss_pred HHHHHHHhcccchhhccCcccccccchhhHHHHhhcchHHHHhhcchHHHHHHHHHhhcCcccHHHHHHHHHH-Hhhcch
Confidence 4789999999999999999955454442 11111211111 1 1222211111100 011111 111101
Q ss_pred HHHHHHHHhHHhhHhcCCceecceeeeecCCCccchhHHHHHHHHhhhccCCccceEEEEEECCeEEEEEecCCCCCCH-
Q 029510 67 QSAANKFLDKVFRVRLGRGFYGECLGVRADGNSYLSDEIGKQLSARSAAAGLRPIGAVIYMQRNNLKMCLRSTDSATDT- 145 (192)
Q Consensus 67 ~~~i~~~l~~a~~~~~g~~~~~~~l~v~~~~~~~~~s~lg~~l~~~~~~~~l~~~~~~~~~~~~~~~vslRS~~~~~~v- 145 (192)
...++...+++....+...... +-..........++..|+ ...... .+.+.+...++ .+|+||++. +|+
T Consensus 215 ~~~l~~~~kr~~~~~i~~~~~~-~~i~y~~~~g~~s~~~g~-~~~~~~-----d~vv~~~~~d~--~~~~~sk~~-~n~~ 284 (339)
T COG2404 215 IETLSNASKRVVTITIDDKKHV-VEIYYRGPGGYDSSIMGQ-TDELYN-----DFVVFVLRSDS--GISDRSKNN-ANVN 284 (339)
T ss_pred hHHHHHHHHhHhhhccccceee-EEEEecCCCCcchhhccc-hhhhhc-----ceeEEeccCCC--ccccccccc-Cccc
Confidence 3455666667766544442221 011111222235666666 333332 11122223344 578888863 666
Q ss_pred ---HHHHh-hCCCCCcccccCc
Q 029510 146 ---SEIAK-AYGGGGSASSSSF 163 (192)
Q Consensus 146 ---~~iA~-~~gGGGH~~AaG~ 163 (192)
.++|+ +|||||||+|||.
T Consensus 285 ~~~a~~~~~~~gGGGH~nAaG~ 306 (339)
T COG2404 285 IDVAEIAQVQYGGGGHPNAAGG 306 (339)
T ss_pred hhHHHHHHhhcCCCCCcccccc
Confidence 88998 8999999999993
No 4
>PF02272 DHHA1: DHHA1 domain; InterPro: IPR003156 This domain is often found adjacent to the DHH domain, found in the RecJ-like phosphoesterase family IPR001667 from INTERPRO, and is called DHHA1 for DHH associated domain. DHHA1 is diagnostic of DHH subfamily 1 members []. This domain is also found in alanyl tRNA synthetase e.g. P00957 from SWISSPROT, suggesting that it may have an RNA binding function. The domain is about 60 residues long and contains a conserved GG motif.; GO: 0003676 nucleic acid binding; PDB: 1IR6_A 2ZVF_F 3G98_B 3DEV_A 2ZXR_A 2ZXO_A 2ZXP_A.
Probab=98.70 E-value=1.5e-08 Score=69.25 Aligned_cols=48 Identities=27% Similarity=0.422 Sum_probs=39.5
Q ss_pred EECCeEEEEEecCCCCCCHH-HHHhhC------CCCCcccccCcccChhh-HHHHhh
Q 029510 127 MQRNNLKMCLRSTDSATDTS-EIAKAY------GGGGSASSSSFIIRMDE-YNQWLS 175 (192)
Q Consensus 127 ~~~~~~~vslRS~~~~~~v~-~iA~~~------gGGGH~~AaG~~~~~~~-~~~~~~ 175 (192)
..++++++|+||.++ ++.. ++++.+ +||||+.|||+.++.+. +++++.
T Consensus 9 ~~~~~~~~s~rs~~~-~~~~~~~~~~~~~~~~G~GGGh~~aAg~~~~~~~~l~~~~~ 64 (68)
T PF02272_consen 9 EEDGKIKVSARSSKG-VDDKGEILKELAEKLGGKGGGHPDAAGGSIPKPEKLEEFLK 64 (68)
T ss_dssp EESSTEEEEEEESSS-STHH-HHHHHCHHHGTCEEEEESSEEEEEESCGGHHHHHHH
T ss_pred EcCCEEEEEEEECCc-hhhHHHHHHHHHHHcCCCCCCCHHHhcccCCCchhHHHHHH
Confidence 458999999999865 8888 666665 69999999999988766 887775
No 5
>COG3887 Predicted signaling protein consisting of a modified GGDEF domain and a DHH domain [Signal transduction mechanisms]
Probab=98.05 E-value=9.4e-06 Score=76.54 Aligned_cols=37 Identities=22% Similarity=0.407 Sum_probs=34.1
Q ss_pred CCeEEEEEecCCCCCCHHHHHhhCCCCCcccccCcccC
Q 029510 129 RNNLKMCLRSTDSATDTSEIAKAYGGGGSASSSSFIIR 166 (192)
Q Consensus 129 ~~~~~vslRS~~~~~~v~~iA~~~gGGGH~~AaG~~~~ 166 (192)
++.+.+|-||.++ ++|..|++++|||||.++|++.+.
T Consensus 596 ~~~i~ISaRS~g~-iNVQ~ImEaLGGGGH~tnAAtql~ 632 (655)
T COG3887 596 DGLISISARSLGK-INVQVIMEALGGGGHLTNAATQLK 632 (655)
T ss_pred CCeEEEEecccCC-chHHHHHHHhcCcchhhHHHHhhc
Confidence 7889999999986 999999999999999999999754
No 6
>TIGR00644 recJ single-stranded-DNA-specific exonuclease RecJ. All proteins in this family are 5'-3' single-strand DNA exonucleases. These proteins are used in some aspects of mismatch repair, recombination, and recombinational repair.
Probab=97.87 E-value=0.00014 Score=68.47 Aligned_cols=69 Identities=13% Similarity=0.243 Sum_probs=47.0
Q ss_pred ccchhHHHHHHHHhhhccCCccceEEEEEE-CCe-EEEEEecCCCCCCHHHHH----h-hC-CCCCcccccCcccChhhH
Q 029510 99 SYLSDEIGKQLSARSAAAGLRPIGAVIYMQ-RNN-LKMCLRSTDSATDTSEIA----K-AY-GGGGSASSSSFIIRMDEY 170 (192)
Q Consensus 99 ~~~~s~lg~~l~~~~~~~~l~~~~~~~~~~-~~~-~~vslRS~~~~~~v~~iA----~-~~-gGGGH~~AaG~~~~~~~~ 170 (192)
+.....++..++.+. +. | ++++.. ++. +|.|.||.++ +|+.++- . .+ .||||+.|||++++.+.+
T Consensus 336 ~Gv~GivA~rl~~~~---~k-P--~ivls~~~~~~~kgS~Rs~~g-~nl~~~l~~~~~~~l~~~GGH~~AaG~~i~~~~~ 408 (539)
T TIGR00644 336 PGVLGIVASRLAETF---NK-P--VIVLAIDEGKGAKGSARSISG-IDLYDLLSELREALFLKFGGHAMAAGLTLKRENL 408 (539)
T ss_pred CchHHHHHHHHHHHH---CC-C--EEEEEEcCCceEEEeeccCCC-CcHHHHHHHHHHhhccccCChHHcCeeEEcHHHH
Confidence 445566666666544 32 3 344443 444 8999999975 9998743 3 33 499999999999997777
Q ss_pred HHHh
Q 029510 171 NQWL 174 (192)
Q Consensus 171 ~~~~ 174 (192)
+++.
T Consensus 409 ~~f~ 412 (539)
T TIGR00644 409 EEFR 412 (539)
T ss_pred HHHH
Confidence 6665
No 7
>PRK11070 ssDNA exonuclease RecJ; Provisional
Probab=97.16 E-value=0.0043 Score=59.16 Aligned_cols=69 Identities=14% Similarity=0.221 Sum_probs=46.5
Q ss_pred ccchhHHHHHHHHhhhccCCccceEEEEEE--CCeEEEEEecCCCCCCHHHHHh--------h-CCCCCcccccCcccCh
Q 029510 99 SYLSDEIGKQLSARSAAAGLRPIGAVIYMQ--RNNLKMCLRSTDSATDTSEIAK--------A-YGGGGSASSSSFIIRM 167 (192)
Q Consensus 99 ~~~~s~lg~~l~~~~~~~~l~~~~~~~~~~--~~~~~vslRS~~~~~~v~~iA~--------~-~gGGGH~~AaG~~~~~ 167 (192)
+.+..-++..++.+. +- | ++++.. ++..|-|.||.++ +|+.+.=+ . ...|||+.|||++++.
T Consensus 365 ~GViGIVAsrl~e~y---~r-P--~ivls~~~~g~~kGS~RSi~g-~~l~~aL~~~~~~~~~ll~~fGGH~~AaG~ti~~ 437 (575)
T PRK11070 365 QGVVGILASRIKERF---HR-P--VIAFAPAGDGTLKGSGRSIQG-LHMRDALERLDTLYPGLILKFGGHAMAAGLSLEE 437 (575)
T ss_pred ccHHHHHHHHHHHHH---CC-C--EEEEEEcCCCeEEEEEeCCCC-CcHHHHHHHhhhcccchhhccCChHHhCcceeCH
Confidence 344455555555544 33 3 444543 4789999999975 99875322 2 3699999999999987
Q ss_pred hhHHHHh
Q 029510 168 DEYNQWL 174 (192)
Q Consensus 168 ~~~~~~~ 174 (192)
+.++.+.
T Consensus 438 e~l~~f~ 444 (575)
T PRK11070 438 DKFELFQ 444 (575)
T ss_pred HHHHHHH
Confidence 7776655
No 8
>COG0608 RecJ Single-stranded DNA-specific exonuclease [DNA replication, recombination, and repair]
Probab=80.70 E-value=7.5 Score=36.24 Aligned_cols=45 Identities=16% Similarity=0.181 Sum_probs=30.5
Q ss_pred CCeEEEEEecCC-CCCCHHH----HHh--hC-CCCCcccccCcccChhhHHHHh
Q 029510 129 RNNLKMCLRSTD-SATDTSE----IAK--AY-GGGGSASSSSFIIRMDEYNQWL 174 (192)
Q Consensus 129 ~~~~~vslRS~~-~~~~v~~----iA~--~~-gGGGH~~AaG~~~~~~~~~~~~ 174 (192)
.+..|-|.||.+ . .++.+ ... .+ .+|||+.|+|+++..+.++.+.
T Consensus 334 ~~~~kgs~rsi~~~-~~~~~~l~~~~~~~~~~~~gGh~~aagl~~~~~~~~~~~ 386 (491)
T COG0608 334 EGGAKGSARSIAKG-IDLRKLLRKGRSKLLLEKFGGHAMAAGLSLKEENLEEFR 386 (491)
T ss_pred ccccccceeecchh-hhHHHHHHhcCcHhhhhccCCccccCceEeeHhhhHHHH
Confidence 345688999996 3 66665 222 22 3899999999998765554444
No 9
>PF06821 Ser_hydrolase: Serine hydrolase; InterPro: IPR010662 This family contains a number of hypothetical bacterial proteins of unknown function, which may be cytosolic. The Crystal Structure Of The Yden Gene Product Swiss:P96671 from B. Subtilis has been solved. The structure shows an alpha-beta hydrolase fold suggesting an enzymatic function for these proteins [].; GO: 0016787 hydrolase activity; PDB: 3BDV_B 2QS9_A 1UXO_A.
Probab=50.38 E-value=8.8 Score=30.73 Aligned_cols=41 Identities=22% Similarity=0.266 Sum_probs=27.6
Q ss_pred EEEecCCCCCCH-----HHHHhhC-------CCCCcccccCcccChhhHHHHhh
Q 029510 134 MCLRSTDSATDT-----SEIAKAY-------GGGGSASSSSFIIRMDEYNQWLS 175 (192)
Q Consensus 134 vslRS~~~~~~v-----~~iA~~~-------gGGGH~~AaG~~~~~~~~~~~~~ 175 (192)
+-+.|.+| +-| .++|+++ |+|||++++...-+.++..+++.
T Consensus 118 ~viaS~nD-p~vp~~~a~~~A~~l~a~~~~~~~~GHf~~~~G~~~~p~~~~~l~ 170 (171)
T PF06821_consen 118 IVIASDND-PYVPFERAQRLAQRLGAELIILGGGGHFNAASGFGPWPEGLDLLQ 170 (171)
T ss_dssp EEEEETTB-SSS-HHHHHHHHHHHT-EEEEETS-TTSSGGGTHSS-HHHHHHHH
T ss_pred EEEEcCCC-CccCHHHHHHHHHHcCCCeEECCCCCCcccccCCCchHHHHHHhc
Confidence 45667765 433 2477765 49999999988788888877764
No 10
>PF03295 Pox_TAA1: Poxvirus trans-activator protein A1 C-terminal; InterPro: IPR004975 Late transcription factor VLTF-2, acts with RNA polymerase to initiate transcription from late gene promoters [].
Probab=41.87 E-value=63 Score=22.04 Aligned_cols=19 Identities=26% Similarity=0.586 Sum_probs=14.3
Q ss_pred ceEEEEEE-CCeEEEEEecC
Q 029510 121 IGAVIYMQ-RNNLKMCLRST 139 (192)
Q Consensus 121 ~~~~~~~~-~~~~~vslRS~ 139 (192)
.|.+++.+ ++.+++||||-
T Consensus 43 YG~c~~~e~~~~i~isLrsl 62 (63)
T PF03295_consen 43 YGSCYYKENDQSIRISLRSL 62 (63)
T ss_pred eeEEEEecCCcEEEEEeeec
Confidence 34678877 56699999983
No 11
>PRK14869 putative manganese-dependent inorganic pyrophosphatase; Provisional
Probab=33.31 E-value=2.3e+02 Score=26.54 Aligned_cols=24 Identities=21% Similarity=0.304 Sum_probs=17.6
Q ss_pred HHHhhCC---CCCcccccCcccChhhH
Q 029510 147 EIAKAYG---GGGSASSSSFIIRMDEY 170 (192)
Q Consensus 147 ~iA~~~g---GGGH~~AaG~~~~~~~~ 170 (192)
.+++.|| ++|+....|.--+++++
T Consensus 509 ~~~~~~~~~~~~~~~~~~~~~srkkq~ 535 (546)
T PRK14869 509 IVARAFGVPLEDNSFYLPGVVSRKKQV 535 (546)
T ss_pred HHHHHhCCcCcCCeEECCCCcccchhh
Confidence 4777787 56788888887666665
No 12
>COG0618 Exopolyphosphatase-related proteins [General function prediction only]
Probab=26.59 E-value=56 Score=28.86 Aligned_cols=48 Identities=13% Similarity=0.149 Sum_probs=23.1
Q ss_pred HHHHHHhCccccccCCCcHHHHHHH--hhcCCcccccCcHHHH---HHHHccChH
Q 029510 4 VLKYIEDMDLRRWSLPDINAFRIGL--REWRSKLNCITNPYIY---KQLLEINSV 53 (192)
Q Consensus 4 lv~~i~d~Dlwrf~~~~t~~i~a~L--~~~~fd~~~~~~~~~~---~~L~~~~~~ 53 (192)
+.++++..++ .+....++.++.++ ||++|.+ .++++..+ ..|...+.+
T Consensus 140 i~~~~~~~~~-~~~~~~At~L~~GI~tDTg~F~~-~~t~~~~~~~a~~L~~~g~~ 192 (332)
T COG0618 140 IAELLKEAGI-DLDPLVATALLLGIRTDTGRFRY-ANTTADTLAAAALLVEAGAD 192 (332)
T ss_pred HHHHHHHcCC-CccHHHHHHHHhhhhhccccccc-CCCChhHHHHHHHHHhCCCC
Confidence 4455555541 11111455566666 6777776 33333232 244555443
No 13
>PF01795 Methyltransf_5: MraW methylase family; InterPro: IPR002903 This is a family of S-adenosyl-L-methionine-dependent methyltransferases, which are found primarily, though not exclusively, in bacteria. The Escherichia coli protein is essential and has been linked to peptidoglycan biosynthesis [, ].; GO: 0008168 methyltransferase activity; PDB: 1N2X_A 1M6Y_A 1WG8_A 3TKA_A.
Probab=22.29 E-value=23 Score=31.49 Aligned_cols=10 Identities=40% Similarity=1.139 Sum_probs=7.6
Q ss_pred hCCCCCcccc
Q 029510 151 AYGGGGSASS 160 (192)
Q Consensus 151 ~~gGGGH~~A 160 (192)
.||+|||-.|
T Consensus 28 T~G~GGHS~a 37 (310)
T PF01795_consen 28 TFGGGGHSKA 37 (310)
T ss_dssp T-TTSHHHHH
T ss_pred cCCcHHHHHH
Confidence 5999999865
No 14
>PF02229 PC4: Transcriptional Coactivator p15 (PC4); InterPro: IPR003173 p15 has a bipartite structure composed of an amino-terminal regulatory domain and a carboxy-terminal cryptic DNA-binding domain []. The DNA-binding activity of the carboxy-terminal is disguised by the amino-terminal p15 domain. Activity is controlled by protein kinases that target the regulatory domain.; GO: 0003677 DNA binding, 0003713 transcription coactivator activity, 0006355 regulation of transcription, DNA-dependent; PDB: 3PM7_B 2LTD_A 2LTT_B 3OBH_B 2L3A_B 2PHE_B 1PCF_B 2C62_B.
Probab=21.56 E-value=19 Score=23.65 Aligned_cols=33 Identities=9% Similarity=0.148 Sum_probs=21.9
Q ss_pred CCHHHHHhhCCCCCcccccCcccChhhHHHHhh
Q 029510 143 TDTSEIAKAYGGGGSASSSSFIIRMDEYNQWLS 175 (192)
Q Consensus 143 ~~v~~iA~~~gGGGH~~AaG~~~~~~~~~~~~~ 175 (192)
+|+++.-..-.|--+|...|.+++.+++.+|..
T Consensus 22 vdIRe~y~~~~g~~~P~kKGIsL~~~q~~~l~~ 54 (56)
T PF02229_consen 22 VDIREWYEKKDGEWKPTKKGISLTPEQWKELKE 54 (56)
T ss_dssp EEEEEEETTSSS-EEEEEEEEEE-HHHHHHHHH
T ss_pred EEEEeeEEcCCCcCcCcCCEEEcCHHHHHHHHh
Confidence 344443344445568999999999999988865
Done!