Query 029511
Match_columns 192
No_of_seqs 167 out of 545
Neff 4.5
Searched_HMMs 29240
Date Mon Mar 25 23:16:06 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029511.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/029511hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1vd2_A Protein kinase C, IOTA 96.4 0.0056 1.9E-07 45.3 5.7 56 112-186 6-61 (89)
2 1wmh_B Partitioning defective- 96.0 0.017 5.8E-07 42.6 6.3 57 112-186 6-62 (86)
3 2kkc_A Sequestosome-1; P62, PB 95.6 0.021 7.3E-07 43.1 5.6 58 112-186 5-77 (102)
4 2ktr_A Sequestosome-1; autopha 95.6 0.026 8.7E-07 43.8 6.1 67 103-186 11-92 (117)
5 1q1o_A Cell division control p 86.1 2.7 9.1E-05 31.5 7.0 64 112-188 5-74 (98)
6 1oey_J P40-PHOX, neutrophil cy 82.4 2.2 7.6E-05 32.5 5.2 38 129-186 28-65 (107)
7 1pqs_A Cell division control p 77.8 2.6 8.9E-05 30.0 4.0 47 129-188 7-53 (77)
8 1wj6_A KIAA0049 protein, RSGI 72.9 6.3 0.00021 29.7 5.2 53 113-185 15-67 (101)
9 2bkf_A Zinc-finger protein NBR 72.0 11 0.00037 27.7 6.1 54 113-186 7-60 (87)
10 1e8p_A Endoglucanase, dockerin 58.1 2.9 9.9E-05 27.5 0.7 13 173-185 20-32 (46)
11 3o27_A Putative uncharacterize 44.6 14 0.00049 25.9 2.5 22 165-186 38-59 (68)
12 1oey_A P67-PHOX, neutrophil cy 42.0 45 0.0015 23.9 4.9 55 114-189 7-62 (83)
13 2i1s_A Hypothetical protein; m 27.8 52 0.0018 26.0 3.7 36 113-148 9-46 (188)
14 2npt_A Dual specificity mitoge 27.7 1.1E+02 0.0037 23.0 5.1 56 113-187 15-71 (106)
15 2j4m_A Endoglucanase 45A; dock 27.6 13 0.00045 27.9 0.1 12 173-184 21-32 (100)
16 3brc_A Conserved protein of un 24.2 22 0.00075 28.6 0.8 15 19-33 95-109 (156)
17 2kvv_A Putative excisionase; D 22.5 29 0.001 24.9 1.1 46 100-148 27-72 (78)
No 1
>1vd2_A Protein kinase C, IOTA type; PB1 domain, OPCA motif, APKC, ZIP/P62, MEK5, molecular recognition, transferase; NMR {Homo sapiens} SCOP: d.15.2.2 PDB: 1wmh_A
Probab=96.43 E-value=0.0056 Score=45.26 Aligned_cols=56 Identities=16% Similarity=0.186 Sum_probs=43.1
Q ss_pred CceEEEEEcCCcccceeecCCCCCHHHHHHHHHHhhcccccCCCcchhhhhhhCCCCCCCeEEEEEeCCCCeeec
Q 029511 112 SKLVKVAVDGAPYLRKVDLQIYSSYQDLFRALEEMFTCFTTRGDYNMEERKLTGALNGREYVPTYEDKDDDWMLL 186 (192)
Q Consensus 112 ~~~VKV~MdG~pigRKVDL~~~~sY~eL~~aLe~MF~~~~i~~~~~~~e~~l~d~~~~~~~~ltYeDkeGDwMLV 186 (192)
..=|||+-.|.- |.+.+..--+|++|...|..+|. +. .+..+++.|.|.|||+.-+
T Consensus 6 ~vkvK~~~~gdi--~~~~v~~~i~~~~L~~kv~~~~~---~~--------------~~~~f~lky~DEeGD~iti 61 (89)
T 1vd2_A 6 QVRVKAYYRGDI--MITHFEPSISFEGLCNEVRDMCS---FD--------------NEQLFTMKWIDEEGDPCTV 61 (89)
T ss_dssp CEEEEEESSSCE--EEEEECTTCCHHHHHHHHHHHTT---CC--------------SSCCEEEEECCSSSCCEEC
T ss_pred eEEEEEEeCCeE--EEEECCCCCCHHHHHHHHHHHhC---CC--------------CCCeEEEEEECCCCCcccc
Confidence 356888999984 45555556799999999999999 21 2457899999999998643
No 2
>1wmh_B Partitioning defective-6 homolog alpha; kinase, PB1 domain, OPCA motif, APKC, cell polarity, transferase/cell cycle complex; 1.50A {Homo sapiens} SCOP: d.15.2.2
Probab=95.98 E-value=0.017 Score=42.62 Aligned_cols=57 Identities=21% Similarity=0.202 Sum_probs=43.3
Q ss_pred CceEEEEEcCCcccceeecCCCCCHHHHHHHHHHhhcccccCCCcchhhhhhhCCCCCCCeEEEEEeCCCCeeec
Q 029511 112 SKLVKVAVDGAPYLRKVDLQIYSSYQDLFRALEEMFTCFTTRGDYNMEERKLTGALNGREYVPTYEDKDDDWMLL 186 (192)
Q Consensus 112 ~~~VKV~MdG~pigRKVDL~~~~sY~eL~~aLe~MF~~~~i~~~~~~~e~~l~d~~~~~~~~ltYeDkeGDwMLV 186 (192)
..-||..-|+.--=-.||-....+|++|..-|+++|. +. ...|++.|.|.|||++-.
T Consensus 6 ~l~vKskf~aE~RRFs~d~~~~~~fe~f~~lv~~lh~---L~---------------~~~f~i~Y~D~dGDLlpI 62 (86)
T 1wmh_B 6 IVEVKSKFDAEFRRFALPRASVSGFQEFSRLLRAVHQ---IP---------------GLDVLLGYTDAHGDLLPL 62 (86)
T ss_dssp EEEEEEEETTEEEEEEEEGGGCCCHHHHHHHHHHHTT---CT---------------TCCCEEEEECTTSCEEEC
T ss_pred EEEEEeecCCeeeEeEccCCCCCCHHHHHHHHHHHcC---CC---------------CCCEEEEEECCCCCEeee
Confidence 3457888887733335555677899999999999998 22 246899999999999754
No 3
>2kkc_A Sequestosome-1; P62, PB1, autophagy, ubiquitin-proteasome system, NF-KB signaling, alternative splicing, apoptosis, cytoplasm, differentiation; NMR {Rattus norvegicus} PDB: 2ktr_B
Probab=95.60 E-value=0.021 Score=43.10 Aligned_cols=58 Identities=16% Similarity=0.253 Sum_probs=43.1
Q ss_pred CceEEEEEcCC----cccceeecCC-----------CCCHHHHHHHHHHhhcccccCCCcchhhhhhhCCCCCCCeEEEE
Q 029511 112 SKLVKVAVDGA----PYLRKVDLQI-----------YSSYQDLFRALEEMFTCFTTRGDYNMEERKLTGALNGREYVPTY 176 (192)
Q Consensus 112 ~~~VKV~MdG~----pigRKVDL~~-----------~~sY~eL~~aLe~MF~~~~i~~~~~~~e~~l~d~~~~~~~~ltY 176 (192)
+.-||++..|. .=-|++-|.. -.+|++|...++++|.. + .+..|.|.|
T Consensus 5 ~~~vKayl~~~~~~~~EiRRF~l~~~~~p~~~~~~~~~s~~~L~~~V~~lFp~--l---------------~~~~f~l~Y 67 (102)
T 2kkc_A 5 SLTVKAYLLGKEEAAREIRRFSFCFSPEPEAEAAAGPGPCERLLSRVAVLFPA--L---------------RPGGFQAHY 67 (102)
T ss_dssp EEEEEEEEECSSSCEEEEEEEEEESSSCSCSSSCCSCCHHHHHHHHHHHHCTT--S---------------CSSCEEEEE
T ss_pred eEEEEEEEccCCCCCCceEEEEeccCCCcccccccccccHHHHHHHHHHHccc--c---------------CCCcEEEEE
Confidence 46789998762 3456665542 14899999999999983 1 245799999
Q ss_pred EeCCCCeeec
Q 029511 177 EDKDDDWMLL 186 (192)
Q Consensus 177 eDkeGDwMLV 186 (192)
.|.|||+.-+
T Consensus 68 ~DedGDlIti 77 (102)
T 2kkc_A 68 RAERGDLVAF 77 (102)
T ss_dssp ECTTCCEEEE
T ss_pred ECCCCCEEEe
Confidence 9999998654
No 4
>2ktr_A Sequestosome-1; autophagy, NF-KB signaling, HOMO-oligomer, PB1 dimer, signaling protein, transport protein; NMR {Rattus norvegicus}
Probab=95.58 E-value=0.026 Score=43.77 Aligned_cols=67 Identities=15% Similarity=0.242 Sum_probs=43.7
Q ss_pred cccccccCCCceEEEEEcCC----cccceeecCC-----------CCCHHHHHHHHHHhhcccccCCCcchhhhhhhCCC
Q 029511 103 FRKKTLEGSSKLVKVAVDGA----PYLRKVDLQI-----------YSSYQDLFRALEEMFTCFTTRGDYNMEERKLTGAL 167 (192)
Q Consensus 103 ~rkn~~~~~~~~VKV~MdG~----pigRKVDL~~-----------~~sY~eL~~aLe~MF~~~~i~~~~~~~e~~l~d~~ 167 (192)
|--|.++.+..-||++..|. .=-|++-|.. -.+|++|...++++|.. +
T Consensus 11 ~~~~~~~~~~l~vKayl~~~~~~~~EIRRF~l~~~~~p~~~~~~~~~s~~~L~~kV~~lFp~--L--------------- 73 (117)
T 2ktr_A 11 YEGDELHMGSLTVKAYLLGKEEAAREIRRFSFCFSPEPEAEAAAGPGPSERLLSRVAVLFPA--L--------------- 73 (117)
T ss_dssp ---------CEEEEEEEECSSSCEEEEEEEEECSSSCSCSSSCCSCCHHHHHHHHHHHHCTT--S---------------
T ss_pred eeccccccccEEEEEEEecCCCCCCcEEEEEeccCCCccccccccCCCHHHHHHHHHHHccc--c---------------
Confidence 33444555678999999752 2346665541 35999999999999972 1
Q ss_pred CCCCeEEEEEeCCCCeeec
Q 029511 168 NGREYVPTYEDKDDDWMLL 186 (192)
Q Consensus 168 ~~~~~~ltYeDkeGDwMLV 186 (192)
.+..|+|.|.|.|||+.-+
T Consensus 74 ~~~~f~l~YkDEdGDlItI 92 (117)
T 2ktr_A 74 RPGGFQAHYRAERGDLVAF 92 (117)
T ss_dssp CSSCEEEEEECTTCCEEEE
T ss_pred CCCcEEEEEECCCCCEEEe
Confidence 2457999999999998654
No 5
>1q1o_A Cell division control protein 24; PB1 domain, PCCR, PC motif, OPCA motif, yeast, cell polarity, protein-protein interaction; NMR {Saccharomyces cerevisiae} SCOP: d.15.2.2 PDB: 2kfj_A 2kfk_B
Probab=86.08 E-value=2.7 Score=31.45 Aligned_cols=64 Identities=17% Similarity=0.306 Sum_probs=45.1
Q ss_pred CceEEEEEcCC------cccceeecCCCCCHHHHHHHHHHhhcccccCCCcchhhhhhhCCCCCCCeEEEEEeCCCCeee
Q 029511 112 SKLVKVAVDGA------PYLRKVDLQIYSSYQDLFRALEEMFTCFTTRGDYNMEERKLTGALNGREYVPTYEDKDDDWML 185 (192)
Q Consensus 112 ~~~VKV~MdG~------pigRKVDL~~~~sY~eL~~aLe~MF~~~~i~~~~~~~e~~l~d~~~~~~~~ltYeDkeGDwML 185 (192)
+.-|||+-+.. .=.|.|=+..--+|++|...+.+-|..+. +. +. .....|-|+|.|||+..
T Consensus 5 sikVKv~y~~~~~~~~~~d~~~i~V~~~i~f~~L~~kI~~Kl~~~~--~~---------~i--~~~~klkYkDEdGD~Vt 71 (98)
T 1q1o_A 5 SILFRISYNNNSNNTSSSEIFTLLVEKVWNFDDLIMAINSKISNTH--NN---------NI--SPITKIKYQDEDGDFVV 71 (98)
T ss_dssp CEEEEEEECSSCSSCCCCEEEEEEECTTCCHHHHHHHHHHHHHHHC--SS---------CC--CCCCCEEEECSSSCEEE
T ss_pred cEEEEEEecCcccccccCcEEEEEecCCCCHHHHHHHHHHHHcCCc--cc---------cc--cceeEEEEEcCCCCEEE
Confidence 35678887642 12366667788899999999999998321 10 01 23468999999999988
Q ss_pred ccC
Q 029511 186 LGD 188 (192)
Q Consensus 186 VGD 188 (192)
.++
T Consensus 72 l~s 74 (98)
T 1q1o_A 72 LGS 74 (98)
T ss_dssp ECS
T ss_pred EcC
Confidence 775
No 6
>1oey_J P40-PHOX, neutrophil cytosol factor 4; immune system, PB1 heterodimer/complex, NADPH oxidase, PB1 D heterodimerization; 2.0A {Homo sapiens} SCOP: d.15.2.2
Probab=82.42 E-value=2.2 Score=32.50 Aligned_cols=38 Identities=24% Similarity=0.357 Sum_probs=31.3
Q ss_pred ecCCCCCHHHHHHHHHHhhcccccCCCcchhhhhhhCCCCCCCeEEEEEeCCCCeeec
Q 029511 129 DLQIYSSYQDLFRALEEMFTCFTTRGDYNMEERKLTGALNGREYVPTYEDKDDDWMLL 186 (192)
Q Consensus 129 DL~~~~sY~eL~~aLe~MF~~~~i~~~~~~~e~~l~d~~~~~~~~ltYeDkeGDwMLV 186 (192)
||..--.|.+|+.-..+-|.. .+-+|-|.|.|||+.-+
T Consensus 28 dl~~~P~ykdLl~lmr~~F~~--------------------~DIaLNYrD~eGDLIri 65 (107)
T 1oey_J 28 DLSSTPLLKDLLELTRREFQR--------------------EDIALNYRDAEGDLVRL 65 (107)
T ss_dssp CTTCCCCHHHHHHHHHHHHCC--------------------SSEEEEEECTTSCEEEC
T ss_pred ccccCCCHHHHHHHHHHHhcc--------------------cceeeeeecCCCCEEEE
Confidence 577788999999999999983 13378899999999754
No 7
>1pqs_A Cell division control protein 24; alpha and beta protein, cell cycle; NMR {Saccharomyces cerevisiae} SCOP: d.15.2.2 PDB: 1tz1_A
Probab=77.83 E-value=2.6 Score=29.99 Aligned_cols=47 Identities=19% Similarity=0.319 Sum_probs=33.3
Q ss_pred ecCCCCCHHHHHHHHHHhhcccccCCCcchhhhhhhCCCCCCCeEEEEEeCCCCeeeccC
Q 029511 129 DLQIYSSYQDLFRALEEMFTCFTTRGDYNMEERKLTGALNGREYVPTYEDKDDDWMLLGD 188 (192)
Q Consensus 129 DL~~~~sY~eL~~aLe~MF~~~~i~~~~~~~e~~l~d~~~~~~~~ltYeDkeGDwMLVGD 188 (192)
=...--+|++|...+.+-|..+. . . + ......+-|.|.|||+...++
T Consensus 7 ~V~~~i~f~~L~~kI~~kl~~~~-~-~---------~--~~~~~~lkYkDEdGD~Vti~s 53 (77)
T 1pqs_A 7 LVEKVWNFDDLIMAINSKISNTH-N-N---------N--ISPITKIKYQDEDGDFVVLGS 53 (77)
T ss_dssp ECTTCCCSHHHHHHHHHHTTTTT-S-S---------C--SCSTTCCEEEETTTEEEECCS
T ss_pred EeCCCCCHHHHHHHHHHHHcccc-c-c---------c--ccceeEEEEEcCCCCEEEEcC
Confidence 34455689999999999988421 0 0 0 024568999999999987765
No 8
>1wj6_A KIAA0049 protein, RSGI RUH-024; PB1 domain, protein binding, structural genomics, riken structural genomics/proteomics initiative; NMR {Homo sapiens} SCOP: d.15.2.2
Probab=72.87 E-value=6.3 Score=29.72 Aligned_cols=53 Identities=11% Similarity=0.080 Sum_probs=40.8
Q ss_pred ceEEEEEcCCcccceeecCCCCCHHHHHHHHHHhhcccccCCCcchhhhhhhCCCCCCCeEEEEEeCCCCeee
Q 029511 113 KLVKVAVDGAPYLRKVDLQIYSSYQDLFRALEEMFTCFTTRGDYNMEERKLTGALNGREYVPTYEDKDDDWML 185 (192)
Q Consensus 113 ~~VKV~MdG~pigRKVDL~~~~sY~eL~~aLe~MF~~~~i~~~~~~~e~~l~d~~~~~~~~ltYeDkeGDwML 185 (192)
.-+||.--|...---|.-..--.+++|-..+..+|+ + +.++|.|-|.|||-.-
T Consensus 15 v~lkV~f~ge~~rF~Vs~~~~~tweel~~mvk~~f~---L-----------------~~~~IkY~DEenD~V~ 67 (101)
T 1wj6_A 15 VTLNVTFKNEIQSFLVSDPENTTWADIEAMVKVSFD---L-----------------NTIQIKYLDEENEEVS 67 (101)
T ss_dssp EEEEEEETTEEEEEEESCTTTSCHHHHHHHHHHHHC---C-----------------SSBCCEEECTTSCEEC
T ss_pred EEEEEEEcCCeeEEEecCCCCCCHHHHHHHHHHHcC---C-----------------CceEEEEecCCCCEEE
Confidence 467899999865555755557789999999999988 2 1458999999999753
No 9
>2bkf_A Zinc-finger protein NBR1 (NEXT to breast cancer 1; PB1 domain, interaction domain, Z finger; 1.56A {Homo sapiens} SCOP: d.15.2.2 PDB: 2g4s_A
Probab=72.00 E-value=11 Score=27.69 Aligned_cols=54 Identities=11% Similarity=0.096 Sum_probs=40.4
Q ss_pred ceEEEEEcCCcccceeecCCCCCHHHHHHHHHHhhcccccCCCcchhhhhhhCCCCCCCeEEEEEeCCCCeeec
Q 029511 113 KLVKVAVDGAPYLRKVDLQIYSSYQDLFRALEEMFTCFTTRGDYNMEERKLTGALNGREYVPTYEDKDDDWMLL 186 (192)
Q Consensus 113 ~~VKV~MdG~pigRKVDL~~~~sY~eL~~aLe~MF~~~~i~~~~~~~e~~l~d~~~~~~~~ltYeDkeGDwMLV 186 (192)
.-+||.--|...---|.-..--++++|-..+..+|+ + +.++|.|-|.|||-.-|
T Consensus 7 v~lkV~f~ge~~rf~vs~~~~~tweel~~mvk~~f~---L-----------------~~~~ikY~DEenD~v~i 60 (87)
T 2bkf_A 7 VTLNVTFKNEIQSFLVSDPENTTWADIEAMVKVSFD---L-----------------NTIQIKYLDEENEEVSI 60 (87)
T ss_dssp EEEEEEETTEEEEEEESCGGGCCHHHHHHHHHHHHT---C-----------------SSEEEEEECTTSCEEEE
T ss_pred EEEEEEEcCCeeEEEeccCCCCCHHHHHHHHHHHcC---C-----------------CceEEEEEcCCCCEEEE
Confidence 347888888854445644457789999999988888 2 15699999999997543
No 10
>1e8p_A Endoglucanase, dockerin; cellulose docking domain, cellulase; NMR {Piromyces equi} SCOP: g.55.1.1 PDB: 1e8q_A
Probab=58.13 E-value=2.9 Score=27.48 Aligned_cols=13 Identities=23% Similarity=0.575 Sum_probs=11.0
Q ss_pred EEEEEeCCCCeee
Q 029511 173 VPTYEDKDDDWML 185 (192)
Q Consensus 173 ~ltYeDkeGDwML 185 (192)
.++|.|.||||=.
T Consensus 20 ~V~YtD~dG~WGV 32 (46)
T 1e8p_A 20 KVEYTDASGQWGV 32 (46)
T ss_dssp CEEEEETTEEEEE
T ss_pred eEEEEcCCCcccc
Confidence 5889999999954
No 11
>3o27_A Putative uncharacterized protein; swapped-hairpin fold, transcription factor, DNA binding PROT; 2.80A {Sulfolobus islandicus}
Probab=44.63 E-value=14 Score=25.94 Aligned_cols=22 Identities=23% Similarity=0.321 Sum_probs=17.9
Q ss_pred CCCCCCCeEEEEEeCCCCeeec
Q 029511 165 GALNGREYVPTYEDKDDDWMLL 186 (192)
Q Consensus 165 d~~~~~~~~ltYeDkeGDwMLV 186 (192)
++..+-++.+++||++|+.+|+
T Consensus 38 gIk~gD~fel~ve~kdgeIvLc 59 (68)
T 3o27_A 38 DIKPDDTFILNMEQKDGDIVLS 59 (68)
T ss_dssp TCCTTCCEEEEEEEETTEEEEE
T ss_pred CCCCCCEEEEEEecCCCeEEEE
Confidence 3445678999999999998875
No 12
>1oey_A P67-PHOX, neutrophil cytosol factor 2; immune system, PB1 heterodimer/complex, NADPH oxidase, PB1 D heterodimerization; 2.0A {Homo sapiens} SCOP: d.15.2.2
Probab=42.00 E-value=45 Score=23.91 Aligned_cols=55 Identities=15% Similarity=0.157 Sum_probs=40.0
Q ss_pred eEEEEEcCCcccceeecCCCCCHHHHHHHHHHhhcccccCCCcchhhhhhhCCCCCCCeEEEEEe-CCCCeeeccCC
Q 029511 114 LVKVAVDGAPYLRKVDLQIYSSYQDLFRALEEMFTCFTTRGDYNMEERKLTGALNGREYVPTYED-KDDDWMLLGDV 189 (192)
Q Consensus 114 ~VKV~MdG~pigRKVDL~~~~sY~eL~~aLe~MF~~~~i~~~~~~~e~~l~d~~~~~~~~ltYeD-keGDwMLVGDv 189 (192)
=|||+-. +.-.|....=-+|.+|...|.+=+. +.. .+=+|-|.| ..|.|++.+|.
T Consensus 7 ~VKV~~~---~tvairvp~~~~y~~L~~~l~~kL~---l~~---------------~~~~LsYk~~~s~~~vi~~d~ 62 (83)
T 1oey_A 7 TLKVHYK---YTVVMKTQPGLPYSQVRDMVSKKLE---LRL---------------EHTKLSYRPRDSNELVPLSED 62 (83)
T ss_dssp EEEEESS---SEEEEEECTTCCHHHHHHHHHHHTT---CCG---------------GGCCEEECCTTCSSCEECCTT
T ss_pred EEEEEEE---EEEEEECCCCCCHHHHHHHHHHHhC---CCc---------------ceeEEEeeCCCCCCeeccChH
Confidence 3555554 7888888888999999999998877 221 122678888 56777777764
No 13
>2i1s_A Hypothetical protein; methanosarcina mazei,MAD, PSI-2,MCSG, structural genomics, protein structure initiative; 2.30A {Methanosarcina mazei} SCOP: d.343.1.1
Probab=27.81 E-value=52 Score=26.04 Aligned_cols=36 Identities=17% Similarity=0.419 Sum_probs=33.4
Q ss_pred ceEEEEEcCC--cccceeecCCCCCHHHHHHHHHHhhc
Q 029511 113 KLVKVAVDGA--PYLRKVDLQIYSSYQDLFRALEEMFT 148 (192)
Q Consensus 113 ~~VKV~MdG~--pigRKVDL~~~~sY~eL~~aLe~MF~ 148 (192)
.-+||..+|. +|=|.|.+..-.+..+|-.+|+..|+
T Consensus 9 y~lrV~L~~~~p~iWRri~Vp~~~TL~~LH~vIq~afg 46 (188)
T 2i1s_A 9 YHLKLSIKGITPQIWRRIQVPENYTFLDLHKAIQAVMD 46 (188)
T ss_dssp EEEEEEETTCSSCEEEEEEEETTCBHHHHHHHHHHHTT
T ss_pred EEEEEEECCCCCCeEEEEEECCCCCHHHHHHHHHHHhC
Confidence 4689999986 79999999999999999999999998
No 14
>2npt_A Dual specificity mitogen-activated protein kinase; MAP2K5, MEK5, MKK PRKMK5, MAP kinase kinase 5, PHOX, PHOX-domain; 1.75A {Homo sapiens} SCOP: d.15.2.2 PDB: 2o2v_A 1wi0_A
Probab=27.74 E-value=1.1e+02 Score=22.98 Aligned_cols=56 Identities=14% Similarity=0.230 Sum_probs=37.3
Q ss_pred ceEEEEEc-CCcccceeecCCCCCHHHHHHHHHHhhcccccCCCcchhhhhhhCCCCCCCeEEEEEeCCCCeeecc
Q 029511 113 KLVKVAVD-GAPYLRKVDLQIYSSYQDLFRALEEMFTCFTTRGDYNMEERKLTGALNGREYVPTYEDKDDDWMLLG 187 (192)
Q Consensus 113 ~~VKV~Md-G~pigRKVDL~~~~sY~eL~~aLe~MF~~~~i~~~~~~~e~~l~d~~~~~~~~ltYeDkeGDwMLVG 187 (192)
.-+.+... |-.+--.||-..+=+|.+|+.++.+..-.-| --..-|||.+||..-|-
T Consensus 15 lVIRIk~p~~g~vDwaV~~~~~L~FrDvL~~I~~vmP~aT-------------------~TAFeYEDE~gDRITVR 71 (106)
T 2npt_A 15 LVIRIKIPNSGAVDWTVHSGPQLLFRDVLDVIGQVLPEAT-------------------TTAFEYEDEDGDRITVR 71 (106)
T ss_dssp EEEEEEETTTEEEEEEECC--CCCHHHHHHHHHHHSTTSC-------------------CSEEEEECTTSCEEEEC
T ss_pred eEEEEECCCCCccccccCCcccccHHHHHHHHHHhCccce-------------------eeeeeeccccCCeeEEc
Confidence 34455554 4446667777677799999999988655211 12567999999998763
No 15
>2j4m_A Endoglucanase 45A; dockerin, cellulosome, protein binding, small cysteine-rich; NMR {Piromyces equi} PDB: 2j4n_A
Probab=27.61 E-value=13 Score=27.93 Aligned_cols=12 Identities=25% Similarity=0.573 Sum_probs=10.5
Q ss_pred EEEEEeCCCCee
Q 029511 173 VPTYEDKDDDWM 184 (192)
Q Consensus 173 ~ltYeDkeGDwM 184 (192)
.++|.|.||||=
T Consensus 21 ~V~YtD~dG~WG 32 (100)
T 2j4m_A 21 KVEYTDASGQWG 32 (100)
T ss_dssp CCCEESSSCEEE
T ss_pred eEEEEcCCCccc
Confidence 578999999994
No 16
>3brc_A Conserved protein of unknown function; methanobacterium thermoautotrophicum, STR genomics, MCSG, PSI-2; 1.60A {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=24.24 E-value=22 Score=28.58 Aligned_cols=15 Identities=27% Similarity=0.330 Sum_probs=10.8
Q ss_pred CccccccccCCCCCC
Q 029511 19 MSFDTELTLGLPGES 33 (192)
Q Consensus 19 ~~~~TELRLGLPG~~ 33 (192)
||=..-=|||.||++
T Consensus 95 DlvIARGRLGvPGSG 109 (156)
T 3brc_A 95 DLVIARGRLGVPGSG 109 (156)
T ss_dssp SEEEEEEECSSTTSC
T ss_pred cEEEEcccccCCCCc
Confidence 444455599999985
No 17
>2kvv_A Putative excisionase; DNA binding, WHTH motif, structural genomics, N structural genomics consortium (NESG), PSI-2; NMR {Klebsiella pneumoniae}
Probab=22.46 E-value=29 Score=24.90 Aligned_cols=46 Identities=15% Similarity=0.364 Sum_probs=34.1
Q ss_pred CCccccccccCCCceEEEEEcCCcccceeecCCCCCHHHHHHHHHHhhc
Q 029511 100 VRSFRKKTLEGSSKLVKVAVDGAPYLRKVDLQIYSSYQDLFRALEEMFT 148 (192)
Q Consensus 100 vrs~rkn~~~~~~~~VKV~MdG~pigRKVDL~~~~sY~eL~~aLe~MF~ 148 (192)
|+.||+++.-.+.-|++|+-||.|-.+.-. .=+|+++-+=.+.|..
T Consensus 27 IkryR~~~WlEGrhyrrvspdG~p~~~S~~---~YN~~~I~~Wie~~~~ 72 (78)
T 2kvv_A 27 IESYRQGAWIEGVHFKRVSPSGEKTLRGTT---WYNYPEINKFIRDSLE 72 (78)
T ss_dssp HHHHHTTTCCBTTTEEEECSSSSCCTTCEE---EEEHHHHHHHHHHHHS
T ss_pred HHHHHhchhhheeeeEeeCCCCCCCcCceE---EEcHHHHHHHHHHHHh
Confidence 468888776668899999999998777666 3356666666666654
Done!