Query 029511
Match_columns 192
No_of_seqs 167 out of 545
Neff 4.5
Searched_HMMs 13730
Date Mon Mar 25 23:16:15 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029511.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/029511hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2bkfa1 d.15.2.2 (A:1-85) Next 96.8 0.0012 8.8E-08 47.0 5.8 55 113-187 5-59 (85)
2 d1ip9a_ d.15.2.2 (A:) Bud emer 95.7 0.0081 5.9E-07 41.7 5.2 55 111-187 11-65 (85)
3 d1wmhb_ d.15.2.2 (B:) Partitio 87.1 0.83 6E-05 31.7 6.2 42 127-186 17-58 (82)
4 d1oeyj_ d.15.2.2 (J:) Neutroph 77.3 1.7 0.00012 31.2 4.8 39 128-186 25-63 (105)
5 d1wmha_ d.15.2.2 (A:) Protein 75.9 3.6 0.00026 28.3 6.1 51 114-183 3-53 (83)
6 d1e8qa_ g.55.1.1 (A:) Cellulos 63.9 0.93 6.8E-05 28.3 0.7 13 172-184 19-31 (46)
7 d1t3ba2 d.17.3.1 (A:2-60) Disu 51.6 3.1 0.00022 26.5 1.6 17 173-189 34-50 (59)
8 d2npta1 d.15.2.2 (A:4-108) Mit 49.0 14 0.001 26.1 5.1 53 115-186 16-69 (105)
9 d1eeja2 d.17.3.1 (A:1-60) Disu 44.7 5.8 0.00042 25.1 2.2 17 173-189 35-51 (60)
10 d1pqsa_ d.15.2.2 (A:) Cell div 26.4 36 0.0026 22.7 3.9 42 133-187 11-52 (77)
11 d1wgra_ d.15.1.5 (A:) Growth f 24.8 61 0.0045 21.3 5.1 37 112-149 9-45 (100)
No 1
>d2bkfa1 d.15.2.2 (A:1-85) Next to BRCA1 gene 1 protein, NBR1 (KIAA0049) {Human (Homo sapiens) [TaxId: 9606]}
Probab=96.77 E-value=0.0012 Score=46.95 Aligned_cols=55 Identities=11% Similarity=0.096 Sum_probs=46.4
Q ss_pred ceEEEEEcCCcccceeecCCCCCHHHHHHHHHHhhcccccCCCcchhhhhhhCCCCCCCeEEEEEeCCCCeeecc
Q 029511 113 KLVKVAVDGAPYLRKVDLQIYSSYQDLFRALEEMFTCFTTRGDYNMEERKLTGALNGREYVPTYEDKDDDWMLLG 187 (192)
Q Consensus 113 ~~VKV~MdG~pigRKVDL~~~~sY~eL~~aLe~MF~~~~i~~~~~~~e~~l~d~~~~~~~~ltYeDkeGDwMLVG 187 (192)
.=|||...|..+=-+|-+..-.+|.+|...|...|+ ++ .+.|.|.|.|+||.++.
T Consensus 5 vtvKvtf~~dt~RF~ls~~~~~~~~~L~~~i~~rf~---l~-----------------~~~lkY~Ddd~e~v~l~ 59 (85)
T d2bkfa1 5 VTLNVTFKNEIQSFLVSDPENTTWADIEAMVKVSFD---LN-----------------TIQIKYLDEENEEVSIN 59 (85)
T ss_dssp EEEEEEETTEEEEEEESCGGGCCHHHHHHHHHHHHT---CS-----------------SEEEEEECTTSCEEEEC
T ss_pred EEEEEEECCceEEEEecCCCCCcHHHHHHHHHHhcC---cc-----------------cceEEEEcCCCCEEEEe
Confidence 458999999866667877788999999999999998 32 26899999999999875
No 2
>d1ip9a_ d.15.2.2 (A:) Bud emergence mediator Bemp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=95.67 E-value=0.0081 Score=41.69 Aligned_cols=55 Identities=9% Similarity=0.065 Sum_probs=42.5
Q ss_pred CCceEEEEEcCCcccceeecCCCCCHHHHHHHHHHhhcccccCCCcchhhhhhhCCCCCCCeEEEEEeCCCCeeecc
Q 029511 111 SSKLVKVAVDGAPYLRKVDLQIYSSYQDLFRALEEMFTCFTTRGDYNMEERKLTGALNGREYVPTYEDKDDDWMLLG 187 (192)
Q Consensus 111 ~~~~VKV~MdG~pigRKVDL~~~~sY~eL~~aLe~MF~~~~i~~~~~~~e~~l~d~~~~~~~~ltYeDkeGDwMLVG 187 (192)
.+.=|||+..+.-+ .+=|..--+|.+|...+.+.|+. + .++|-|.|.||||..+-
T Consensus 11 ~~ikVKv~~~~D~~--~~~l~~~it~~dL~~kI~~rf~~---~-----------------~~~lkY~Dedgd~v~i~ 65 (85)
T d1ip9a_ 11 KTTKIKFYYKDDIF--ALMLKGDTTYKELRSKIAPRIDT---D-----------------NFKLQTKLFDGSGEEIK 65 (85)
T ss_dssp CCEEEEECBTTCCE--EEEECSCCCHHHHHHHHHHHHTS---S-----------------CEEEEECCSSSCCSCCC
T ss_pred CCEEEEEEECCcEE--EEEeCCCCCHHHHHHHHHHHhCC---C-----------------ceEEEEEcCCCCEEEEe
Confidence 34678898888844 44445567899999999999972 1 37999999999997654
No 3
>d1wmhb_ d.15.2.2 (B:) Partitioning defective-6 homolog alpha, PAR-6 alpha {Human (Homo sapiens) [TaxId: 9606]}
Probab=87.11 E-value=0.83 Score=31.67 Aligned_cols=42 Identities=21% Similarity=0.327 Sum_probs=34.9
Q ss_pred eeecCCCCCHHHHHHHHHHhhcccccCCCcchhhhhhhCCCCCCCeEEEEEeCCCCeeec
Q 029511 127 KVDLQIYSSYQDLFRALEEMFTCFTTRGDYNMEERKLTGALNGREYVPTYEDKDDDWMLL 186 (192)
Q Consensus 127 KVDL~~~~sY~eL~~aLe~MF~~~~i~~~~~~~e~~l~d~~~~~~~~ltYeDkeGDwMLV 186 (192)
.+|.....+|+++..-|+.|-. |. +.+++|.|.|.+||.+-.
T Consensus 17 sl~r~~~~~fe~F~~Lle~~H~---l~---------------~~~f~i~Y~D~hgDLLPI 58 (82)
T d1wmhb_ 17 ALPRASVSGFQEFSRLLRAVHQ---IP---------------GLDVLLGYTDAHGDLLPL 58 (82)
T ss_dssp EEEGGGCCCHHHHHHHHHHHTT---CT---------------TCCCEEEEECTTSCEEEC
T ss_pred eeccccccCHHHHHHHHHHHcC---CC---------------CCcEEEEEecCCCCcccc
Confidence 5777888999999999999966 32 357899999999999754
No 4
>d1oeyj_ d.15.2.2 (J:) Neutrophil cytosol factor 4 (p40phox component of NADPH oxidase) {Human (Homo sapiens) [TaxId: 9606]}
Probab=77.31 E-value=1.7 Score=31.22 Aligned_cols=39 Identities=23% Similarity=0.296 Sum_probs=32.0
Q ss_pred eecCCCCCHHHHHHHHHHhhcccccCCCcchhhhhhhCCCCCCCeEEEEEeCCCCeeec
Q 029511 128 VDLQIYSSYQDLFRALEEMFTCFTTRGDYNMEERKLTGALNGREYVPTYEDKDDDWMLL 186 (192)
Q Consensus 128 VDL~~~~sY~eL~~aLe~MF~~~~i~~~~~~~e~~l~d~~~~~~~~ltYeDkeGDwMLV 186 (192)
=||+.--+|.+|..-..+-|..+ +-+|-|.|.|||..-+
T Consensus 25 edl~~~P~ykdLl~lmr~~f~~~--------------------dIaLNYrD~eGDLIRl 63 (105)
T d1oeyj_ 25 EDLSSTPLLKDLLELTRREFQRE--------------------DIALNYRDAEGDLVRL 63 (105)
T ss_dssp SCTTCCCCHHHHHHHHHHHHCCS--------------------SEEEEEECTTSCEEEC
T ss_pred cccccCccHHHHHHHHHHHhccc--------------------eeEeeeecCCCCEEEE
Confidence 47888899999999999998831 3378899999998754
No 5
>d1wmha_ d.15.2.2 (A:) Protein kinase C, iota type {Human (Homo sapiens) [TaxId: 9606]}
Probab=75.86 E-value=3.6 Score=28.35 Aligned_cols=51 Identities=20% Similarity=0.330 Sum_probs=40.4
Q ss_pred eEEEEEcCCcccceeecCCCCCHHHHHHHHHHhhcccccCCCcchhhhhhhCCCCCCCeEEEEEeCCCCe
Q 029511 114 LVKVAVDGAPYLRKVDLQIYSSYQDLFRALEEMFTCFTTRGDYNMEERKLTGALNGREYVPTYEDKDDDW 183 (192)
Q Consensus 114 ~VKV~MdG~pigRKVDL~~~~sY~eL~~aLe~MF~~~~i~~~~~~~e~~l~d~~~~~~~~ltYeDkeGDw 183 (192)
-||+.-.|..+.-.||.. -.|++|...+..|.+ |. +..-|.+-+.|.|||=
T Consensus 3 riK~~y~G~i~it~~~~~--it~e~l~~evr~~C~-f~----------------~~q~fT~KWiDeEGDP 53 (83)
T d1wmha_ 3 RVKAYYRGDIMITHFEPS--ISFEGLCNEVRDMCS-FD----------------NEQLFTMKWIDEEGDP 53 (83)
T ss_dssp EEEEEETTEEEEEEECTT--CCHHHHHHHHHHHTT-CC----------------TTCCCEEEEECTTSCE
T ss_pred EEEEEecCeEEEEecCCC--ccHHHHHHHHHHHhC-CC----------------cCCcEEEEEEcCCCCc
Confidence 478999999887777765 479999999999977 32 2345789999999983
No 6
>d1e8qa_ g.55.1.1 (A:) Cellulose docking domain, dockering {Piromyces equi [TaxId: 99929]}
Probab=63.87 E-value=0.93 Score=28.26 Aligned_cols=13 Identities=23% Similarity=0.481 Sum_probs=11.0
Q ss_pred eEEEEEeCCCCee
Q 029511 172 YVPTYEDKDDDWM 184 (192)
Q Consensus 172 ~~ltYeDkeGDwM 184 (192)
-.++|.|.||||=
T Consensus 19 ~~V~ytD~dG~WG 31 (46)
T d1e8qa_ 19 TKVEYTDASGQWG 31 (46)
T ss_dssp SCEEEEETTEEEE
T ss_pred CeEEEecCCCccc
Confidence 4688999999994
No 7
>d1t3ba2 d.17.3.1 (A:2-60) Disulfide bond isomerase, DsbC, N-terminal domain {Haemophilus influenzae [TaxId: 727]}
Probab=51.57 E-value=3.1 Score=26.51 Aligned_cols=17 Identities=18% Similarity=0.407 Sum_probs=15.4
Q ss_pred EEEEEeCCCCeeeccCC
Q 029511 173 VPTYEDKDDDWMLLGDV 189 (192)
Q Consensus 173 ~ltYeDkeGDwMLVGDv 189 (192)
.+.|.++||+.+++||+
T Consensus 34 gi~Yvs~dg~y~i~G~l 50 (59)
T d1t3ba2 34 GILYVSEDGKYLFEGKL 50 (59)
T ss_dssp EECEEESSSSCEECSCC
T ss_pred EEEEEcCCCCEEEEeEE
Confidence 47899999999999985
No 8
>d2npta1 d.15.2.2 (A:4-108) Mitogen activated protein kinase kinase 5, Map2k5 {Human (Homo sapiens) [TaxId: 9606]}
Probab=48.98 E-value=14 Score=26.09 Aligned_cols=53 Identities=13% Similarity=0.246 Sum_probs=34.8
Q ss_pred EEEEEc-CCcccceeecCCCCCHHHHHHHHHHhhcccccCCCcchhhhhhhCCCCCCCeEEEEEeCCCCeeec
Q 029511 115 VKVAVD-GAPYLRKVDLQIYSSYQDLFRALEEMFTCFTTRGDYNMEERKLTGALNGREYVPTYEDKDDDWMLL 186 (192)
Q Consensus 115 VKV~Md-G~pigRKVDL~~~~sY~eL~~aLe~MF~~~~i~~~~~~~e~~l~d~~~~~~~~ltYeDkeGDwMLV 186 (192)
+.+... |..+--.|+....=+|++++.++.+.-.. . ..=..-|||.|||..-|
T Consensus 16 IRI~~~~~~~vDw~V~~~~~l~F~dvL~~i~q~~p~-----a--------------t~taFEYEDEdGDRITV 69 (105)
T d2npta1 16 IRIKIPNSGAVDWTVHSGPQLLFRDVLDVIGQVLPE-----A--------------TTTAFEYEDEDGDRITV 69 (105)
T ss_dssp EEEEETTTEEEEEEECC--CCCHHHHHHHHHHHSTT-----S--------------CCSEEEEECTTSCEEEE
T ss_pred EEEEcCCCceeeeeecCCceeeHHHHHHHHHHhccc-----c--------------cccceeeccccCCEeEE
Confidence 334333 55566677776677899999999876541 1 11145599999999876
No 9
>d1eeja2 d.17.3.1 (A:1-60) Disulfide bond isomerase, DsbC, N-terminal domain {Escherichia coli [TaxId: 562]}
Probab=44.74 E-value=5.8 Score=25.12 Aligned_cols=17 Identities=18% Similarity=0.294 Sum_probs=15.2
Q ss_pred EEEEEeCCCCeeeccCC
Q 029511 173 VPTYEDKDDDWMLLGDV 189 (192)
Q Consensus 173 ~ltYeDkeGDwMLVGDv 189 (192)
.+.|.++||..++.||+
T Consensus 35 ~i~Yvs~dG~y~i~G~l 51 (60)
T d1eeja2 35 GVLYITDDGKHIIQGPM 51 (60)
T ss_dssp EEEEEETTSCEEEESCE
T ss_pred EEEEEcCCCCEEEEeEE
Confidence 37899999999999984
No 10
>d1pqsa_ d.15.2.2 (A:) Cell division control protein 24, CDC24, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=26.45 E-value=36 Score=22.71 Aligned_cols=42 Identities=21% Similarity=0.376 Sum_probs=27.0
Q ss_pred CCCHHHHHHHHHHhhcccccCCCcchhhhhhhCCCCCCCeEEEEEeCCCCeeecc
Q 029511 133 YSSYQDLFRALEEMFTCFTTRGDYNMEERKLTGALNGREYVPTYEDKDDDWMLLG 187 (192)
Q Consensus 133 ~~sY~eL~~aLe~MF~~~~i~~~~~~~e~~l~d~~~~~~~~ltYeDkeGDwMLVG 187 (192)
--+|++|...+.+--..++-.. . +.--.+-|.|.|||...+.
T Consensus 11 ~i~f~~L~~kI~~Kia~~~~~~-----------~--~~~~rlrY~DeDGD~V~i~ 52 (77)
T d1pqsa_ 11 VWNFDDLIMAINSKISNTHNNN-----------I--SPITKIKYQDEDGDFVVLG 52 (77)
T ss_dssp CCCSHHHHHHHHHHTTTTTSSC-----------S--CSTTCCEEEETTTEEEECC
T ss_pred CcCHHHHHHHHHHHHHhccCCC-----------C--CccceEEEEcCCCCEEEEe
Confidence 3579999999987655322110 0 0112788999999976554
No 11
>d1wgra_ d.15.1.5 (A:) Growth factor receptor-bound protein 7, GRB-7 {Human (Homo sapiens) [TaxId: 9606]}
Probab=24.76 E-value=61 Score=21.35 Aligned_cols=37 Identities=16% Similarity=0.181 Sum_probs=30.6
Q ss_pred CceEEEEEcCCcccceeecCCCCCHHHHHHHHHHhhcc
Q 029511 112 SKLVKVAVDGAPYLRKVDLQIYSSYQDLFRALEEMFTC 149 (192)
Q Consensus 112 ~~~VKV~MdG~pigRKVDL~~~~sY~eL~~aLe~MF~~ 149 (192)
...|||+|+.- --..|.+..-..=++++..|.+.|.+
T Consensus 9 ~~vvkv~~~dg-~~k~l~V~~~tTa~eV~~~l~~K~~~ 45 (100)
T d1wgra_ 9 PHVVKVYSEDG-ACRSVEVAAGATARHVCEMLVQRAHA 45 (100)
T ss_dssp CEEEEEEETTS-CEEEEEECTTCCHHHHHHHHHCSSSC
T ss_pred ceEEEEEecCC-CEEEEEECCCCcHHHHHHHHHHHhCC
Confidence 46899988774 45679999999999999999988873
Done!