BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 029512
(192 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1SUL|A Chain A, Crystal Structure Of The Apo-Ysxc
pdb|1SUL|B Chain B, Crystal Structure Of The Apo-Ysxc
pdb|1SVI|A Chain A, Crystal Structure Of The Gtp-Binding Protein Ysxc
Complexed With Gdp
pdb|1SVW|A Chain A, Crystal Structure Of Ysxc Complexed With Gmppnp
pdb|1SVW|B Chain B, Crystal Structure Of Ysxc Complexed With Gmppnp
Length = 195
Score = 91.3 bits (225), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 43/92 (46%), Positives = 59/92 (64%)
Query: 74 KLEFFAAAKVSSSFPAPDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINF 133
K E +A +P LPEIA AGRSNVGKSS +N+L + + RTS KPG TQT+NF
Sbjct: 5 KSEIVISAVKPEQYPEGGLPEIALAGRSNVGKSSFINSLINRKNLARTSSKPGKTQTLNF 64
Query: 134 FKLGTKLCLVDLPGYGFAYAKEEVKDAWEELV 165
+ + +L VD+PGYGFA + ++AW ++
Sbjct: 65 YIINDELHFVDVPGYGFAKVSKSEREAWGRMI 96
>pdb|3PQC|A Chain A, Crystal Structure Of Thermotoga Maritima Ribosome
Biogenesis Gtp- Binding Protein Engb (YsxcYIHA) IN
COMPLEX WITH GDP
pdb|3PQC|B Chain B, Crystal Structure Of Thermotoga Maritima Ribosome
Biogenesis Gtp- Binding Protein Engb (YsxcYIHA) IN
COMPLEX WITH GDP
pdb|3PR1|A Chain A, Crystal Structure Of Apo Thermotoga Maritima Ribosome
Biogenesis Gtp- Binding Protein Engb
Length = 195
Score = 85.5 bits (210), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 42/108 (38%), Positives = 63/108 (58%), Gaps = 1/108 (0%)
Query: 75 LEFFAAAKVSSSFPAPDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFF 134
+E A+ +P P E+AF GRSNVGKSS+LNAL + + S PG T++INF+
Sbjct: 6 VELVKVARTPGDYPPPLKGEVAFVGRSNVGKSSLLNALFNR-KIAFVSKTPGKTRSINFY 64
Query: 135 KLGTKLCLVDLPGYGFAYAKEEVKDAWEELVSISYRNFWSCTCFLIYI 182
+ +K VDLPGYG+A ++ + W+ LV ++N WS + +
Sbjct: 65 LVNSKYYFVDLPGYGYAKVSKKERMLWKRLVEDYFKNRWSLQMVFLLV 112
>pdb|1PUI|A Chain A, Structure Of Engb Gtpase
pdb|1PUI|B Chain B, Structure Of Engb Gtpase
Length = 210
Score = 85.5 bits (210), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 43/89 (48%), Positives = 53/89 (59%)
Query: 74 KLEFFAAAKVSSSFPAPDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINF 133
+ F +A P+ E+AFAGRSN GKSS LN LT Q + RTS PG TQ IN
Sbjct: 8 QTHFVMSAPDIRHLPSDTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINL 67
Query: 134 FKLGTKLCLVDLPGYGFAYAKEEVKDAWE 162
F++ LVDLPGYG+A EE+K W+
Sbjct: 68 FEVADGKRLVDLPGYGYAEVPEEMKRKWQ 96
>pdb|4DHE|A Chain A, Crystal Structure Of A Probable Gtp-Binding Protein Engb
From Burkholderia Thailandensis
pdb|4DHE|B Chain B, Crystal Structure Of A Probable Gtp-Binding Protein Engb
From Burkholderia Thailandensis
Length = 223
Score = 77.4 bits (189), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 46/114 (40%), Positives = 57/114 (50%), Gaps = 5/114 (4%)
Query: 74 KLEFFAAAKVSSSFPAPDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINF 133
+ FF P PEIAFAGRSN GKS+ +N L Q + S PG TQ IN+
Sbjct: 11 QARFFTTVNHLRDLPPTVQPEIAFAGRSNAGKSTAINVLCNQKRLAFASKTPGRTQHINY 70
Query: 134 FKLGTK----LCLVDLPGYGFAYAKEEVKDAWEELVSISYRNFWSCTCFLIYIF 183
F +G LVDLPGYG+A K WE+L+S SY C +I +
Sbjct: 71 FSVGPAAEPVAHLVDLPGYGYAEVPGAAKAHWEQLLS-SYLQTRPQLCGMILMM 123
>pdb|1PUJ|A Chain A, Structure Of B. Subtilis Ylqf Gtpase
Length = 282
Score = 45.4 bits (106), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 34/49 (69%), Gaps = 1/49 (2%)
Query: 99 GRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPG 147
G NVGKS+++N L ++ + +T D+PG+T + + K+G +L L+D PG
Sbjct: 127 GIPNVGKSTLINRLAKK-NIAKTGDRPGITTSQQWVKVGKELELLDTPG 174
>pdb|2CXX|A Chain A, Crystal Structure Of A Probable Gtp-binding Protein Engb
pdb|2CXX|B Chain B, Crystal Structure Of A Probable Gtp-binding Protein Engb
pdb|2CXX|C Chain C, Crystal Structure Of A Probable Gtp-binding Protein Engb
Length = 190
Score = 45.1 bits (105), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 44/83 (53%), Gaps = 8/83 (9%)
Query: 95 IAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYA- 153
I FAGRSNVGKS+++ LT + VR +PG+T+ I + ++D PG+GF
Sbjct: 4 IIFAGRSNVGKSTLIYRLTGKK--VRRGKRPGVTRKIIEIEWKNH-KIIDXPGFGFXXGL 60
Query: 154 ----KEEVKDAWEELVSISYRNF 172
+E +KD + + +N
Sbjct: 61 PKEVQERIKDEIVHFIEDNAKNI 83
>pdb|3QQ5|A Chain A, Crystal Structure Of The [fefe]-Hydrogenase Maturation
Protein Hydf
Length = 423
Score = 37.7 bits (86), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 30/91 (32%), Positives = 43/91 (47%), Gaps = 13/91 (14%)
Query: 95 IAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLT-----QTINFFKLGTKLCLVDLPGYG 149
I AGR NVGKSS +NAL Q V SD G T +++ +G + LVD PG
Sbjct: 37 IVVAGRRNVGKSSFMNALVGQ-NVSIVSDYAGTTTDPVYKSMELHPIGP-VTLVDTPGL- 93
Query: 150 FAYAKEEVKDAWEELVSISYRNFWSCTCFLI 180
++V + V + R F+ C ++
Sbjct: 94 -----DDVGELGRLRVEKARRVFYRADCGIL 119
>pdb|2WJG|A Chain A, Structure And Function Of The Feob G-Domain From
Methanococcus Jannaschii
pdb|2WJG|B Chain B, Structure And Function Of The Feob G-Domain From
Methanococcus Jannaschii
Length = 188
Score = 36.6 bits (83), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 25/57 (43%), Positives = 32/57 (56%), Gaps = 5/57 (8%)
Query: 94 EIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLT---QTINFFKLGTKLCLVDLPG 147
EIA G NVGKS++ NALT + V + PG+T + F G K +VDLPG
Sbjct: 9 EIALIGNPNVGKSTIFNALTGEN--VYIGNWPGVTVEKKEGEFEYNGEKFKVVDLPG 63
>pdb|2WJI|A Chain A, Structure And Function Of The Feob G-Domain From
Methanococcus Jannaschii
pdb|2WJI|B Chain B, Structure And Function Of The Feob G-Domain From
Methanococcus Jannaschii
Length = 165
Score = 36.6 bits (83), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 25/57 (43%), Positives = 32/57 (56%), Gaps = 5/57 (8%)
Query: 94 EIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLT---QTINFFKLGTKLCLVDLPG 147
EIA G NVGKS++ NALT + V + PG+T + F G K +VDLPG
Sbjct: 5 EIALIGNPNVGKSTIFNALTGEN--VYIGNWPGVTVEKKEGEFEYNGEKFKVVDLPG 59
>pdb|2WJJ|A Chain A, Structure And Function Of The Feob G-Domain From
Methanococcus Jannaschii
pdb|2WJJ|B Chain B, Structure And Function Of The Feob G-Domain From
Methanococcus Jannaschii
Length = 168
Score = 36.6 bits (83), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 25/57 (43%), Positives = 32/57 (56%), Gaps = 5/57 (8%)
Query: 94 EIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLT---QTINFFKLGTKLCLVDLPG 147
EIA G NVGKS++ NALT + V + PG+T + F G K +VDLPG
Sbjct: 6 EIALIGNPNVGKSTIFNALTGEN--VYIGNWPGVTVEKKEGEFEYNGEKFKVVDLPG 60
>pdb|1RFL|A Chain A, Nmr Data Driven Structural Model Of G-Domain Of Mnme
Protein
Length = 172
Score = 36.2 bits (82), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 42/78 (53%), Gaps = 9/78 (11%)
Query: 94 EIAFAGRSNVGKSSMLNALT-RQWGVVRTSDKPGLTQTI---NFFKLGTKLCLVDLPGYG 149
++ AGR N GKSS+LNAL R+ +V +D G T+ + + G L ++D G
Sbjct: 9 KVVIAGRPNAGKSSLLNALAGREAAIV--TDIAGTTRDVLREHIHIDGMPLHIIDTAGLR 66
Query: 150 FAYAKEE---VKDAWEEL 164
A + E ++ AW+E+
Sbjct: 67 EASDEVERIGIERAWQEI 84
>pdb|2WJH|A Chain A, Structure And Function Of The Feob G-Domain From
Methanococcus Jannaschii
pdb|2WJH|B Chain B, Structure And Function Of The Feob G-Domain From
Methanococcus Jannaschii
Length = 166
Score = 36.2 bits (82), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 25/57 (43%), Positives = 32/57 (56%), Gaps = 5/57 (8%)
Query: 94 EIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLT---QTINFFKLGTKLCLVDLPG 147
EIA G NVGKS++ NALT + V + PG+T + F G K +VDLPG
Sbjct: 5 EIALIGNPNVGKSTIFNALTGEN--VYIGNWPGVTVEKKEGEFEYNGEKFKVVDLPG 59
>pdb|3A1W|A Chain A, Crystal Structue Of The G Domain Of T. Maritima Feob Iron
Iransporter
Length = 168
Score = 36.2 bits (82), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 40/81 (49%), Gaps = 12/81 (14%)
Query: 92 LPEIAFAGRSNVGKSSMLNALT------RQWGVVRTSDKPGLTQTINFFKLGTKLCLVDL 145
+ ++A AG NVGK+S+ NALT W V K G+ F G + L+DL
Sbjct: 5 MVKVALAGCPNVGKTSLFNALTGTKQYVANWPGVTVEKKEGV-----FTYKGYTINLIDL 59
Query: 146 PG-YGFAYAKEEVKDAWEELV 165
PG Y Y+ + K A + L+
Sbjct: 60 PGTYSLGYSSIDEKIARDYLL 80
>pdb|3A1T|A Chain A, Crystal Structue Of The Cytosolic Domain Of T. Maritima
Feob Iron Iransporter In Gdp Form Ii
pdb|3A1U|A Chain A, Crystal Structue Of The Cytosolic Domain Of T. Maritima
Feob Iron Iransporter In Gmppnp Form
pdb|3A1U|B Chain B, Crystal Structue Of The Cytosolic Domain Of T. Maritima
Feob Iron Iransporter In Gmppnp Form
pdb|3A1V|A Chain A, Crystal Structue Of The Cytosolic Domain Of T. Maritima
Feob Iron Iransporter In Apo Form
pdb|3A1V|B Chain B, Crystal Structue Of The Cytosolic Domain Of T. Maritima
Feob Iron Iransporter In Apo Form
Length = 258
Score = 36.2 bits (82), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 40/82 (48%), Gaps = 12/82 (14%)
Query: 92 LPEIAFAGRSNVGKSSMLNALT------RQWGVVRTSDKPGLTQTINFFKLGTKLCLVDL 145
+ ++A AG NVGK+S+ NALT W V K G+ F G + L+DL
Sbjct: 5 MVKVALAGCPNVGKTSLFNALTGTKQYVANWPGVTVEKKEGV-----FTYKGYTINLIDL 59
Query: 146 PG-YGFAYAKEEVKDAWEELVS 166
PG Y Y+ + K A + L+
Sbjct: 60 PGTYSLGYSSIDEKIARDYLLK 81
>pdb|2GJ9|A Chain A, Structure Of The Mnme G-Domain In Complex With GdpAlf4-,
Mg2+ And Rb+
pdb|2GJ9|B Chain B, Structure Of The Mnme G-Domain In Complex With GdpAlf4-,
Mg2+ And Rb+
pdb|2GJ9|C Chain C, Structure Of The Mnme G-Domain In Complex With GdpAlf4-,
Mg2+ And Rb+
pdb|2GJ9|D Chain D, Structure Of The Mnme G-Domain In Complex With GdpAlf4-,
Mg2+ And Rb+
pdb|2GJA|A Chain A, Structure Of The Mnme G-Domain In Complex With GdpAlf4-,
Mg2+ And Nh4+
pdb|2GJA|B Chain B, Structure Of The Mnme G-Domain In Complex With GdpAlf4-,
Mg2+ And Nh4+
Length = 172
Score = 36.2 bits (82), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 42/78 (53%), Gaps = 9/78 (11%)
Query: 94 EIAFAGRSNVGKSSMLNALT-RQWGVVRTSDKPGLTQTI---NFFKLGTKLCLVDLPGYG 149
++ AGR N GKSS+LNAL R+ +V +D G T+ + + G L ++D G
Sbjct: 6 KVVIAGRPNAGKSSLLNALAGREAAIV--TDIAGTTRDVLREHIHIDGMPLHIIDTAGLR 63
Query: 150 FAYAKEE---VKDAWEEL 164
A + E ++ AW+E+
Sbjct: 64 EASDEVERIGIERAWQEI 81
>pdb|2GJ8|A Chain A, Structure Of The Mnme G-domain In Complex With Gdp*alf4-,
Mg2+ And K+
pdb|2GJ8|B Chain B, Structure Of The Mnme G-domain In Complex With Gdp*alf4-,
Mg2+ And K+
pdb|2GJ8|C Chain C, Structure Of The Mnme G-domain In Complex With Gdp*alf4-,
Mg2+ And K+
pdb|2GJ8|D Chain D, Structure Of The Mnme G-domain In Complex With Gdp*alf4-,
Mg2+ And K+
Length = 172
Score = 36.2 bits (82), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 42/78 (53%), Gaps = 9/78 (11%)
Query: 94 EIAFAGRSNVGKSSMLNALT-RQWGVVRTSDKPGLTQTI---NFFKLGTKLCLVDLPGYG 149
++ AGR N GKSS+LNAL R+ +V +D G T+ + + G L ++D G
Sbjct: 6 KVVIAGRPNAGKSSLLNALAGREAAIV--TDIAGTTRDVLREHIHIDGXPLHIIDTAGLR 63
Query: 150 FAYAKEE---VKDAWEEL 164
A + E ++ AW+E+
Sbjct: 64 EASDEVERIGIERAWQEI 81
>pdb|3A1S|A Chain A, Crystal Structue Of The Cytosolic Domain Of T. Maritima
Feob Iron Iransporter In Gdp Form I
pdb|3A1S|B Chain B, Crystal Structue Of The Cytosolic Domain Of T. Maritima
Feob Iron Iransporter In Gdp Form I
Length = 258
Score = 35.8 bits (81), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 33/67 (49%), Gaps = 12/67 (17%)
Query: 94 EIAFAGRSNVGKSSMLNALT------RQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPG 147
++A AG NVGK+S+ NALT W V K G+ F G + L+DLPG
Sbjct: 7 KVALAGCPNVGKTSLFNALTGTKQYVANWPGVTVEKKEGV-----FTYKGYTINLIDLPG 61
Query: 148 -YGFAYA 153
Y Y+
Sbjct: 62 TYSLGYS 68
>pdb|2E87|A Chain A, Crystal Structure Of Hypothetical Gtp-Binding Protein
Ph1320 From Pyrococcus Horikoshii Ot3, In Complex With
Gdp
Length = 357
Score = 33.9 bits (76), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 37/73 (50%), Gaps = 7/73 (9%)
Query: 80 AAKVSSSFPAPDL--PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINF--FK 135
A +V P DL P + AG NVGKS++L ALT + + P T+ IN F+
Sbjct: 153 AREVLKDLPVVDLEIPTVVIAGHPNVGKSTLLKALTTAKPEI--ASYPFTTRGINVGQFE 210
Query: 136 LGT-KLCLVDLPG 147
G + ++D PG
Sbjct: 211 DGYFRYQIIDTPG 223
>pdb|3SOP|A Chain A, Crystal Structure Of Human Septin 3 Gtpase Domain
pdb|3SOP|B Chain B, Crystal Structure Of Human Septin 3 Gtpase Domain
Length = 270
Score = 33.5 bits (75), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 21/90 (23%), Positives = 39/90 (43%), Gaps = 12/90 (13%)
Query: 95 IAFAGRSNVGKSSMLNAL------------TRQWGVVRTSDKPGLTQTINFFKLGTKLCL 142
I G+S +GKS+++N L R+ + +T + + I + KL +
Sbjct: 5 IMVVGQSGLGKSTLVNTLFKSQVSRKASSWNREEKIPKTVEIKAIGHVIEEGGVKMKLTV 64
Query: 143 VDLPGYGFAYAKEEVKDAWEELVSISYRNF 172
+D PG+G E + E+ ++ Y F
Sbjct: 65 IDTPGFGDQINNENCWEPIEKYINEQYEKF 94
>pdb|3GEH|A Chain A, Crystal Structure Of Mnme From Nostoc In Complex With Gdp,
Folinic Acid And Zn
Length = 462
Score = 33.1 bits (74), Expect = 0.092, Method: Compositional matrix adjust.
Identities = 33/122 (27%), Positives = 52/122 (42%), Gaps = 21/122 (17%)
Query: 80 AAKVSSSFPAPDLPE-------IAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTIN 132
AA++S D E +A GR NVGKSS+LNA ++ + T D PG T+ +
Sbjct: 205 AAEISQLLATKDKGELLRTGLKVAIVGRPNVGKSSLLNAWSQSDRAIVT-DLPGTTRDVV 263
Query: 133 FFKL---GTKLCLVDLPG----------YGFAYAKEEVKDAWEELVSISYRNFWSCTCFL 179
+L G + ++D G G +++ A L++I W+
Sbjct: 264 ESQLVVGGIPVQVLDTAGIRETSDQVEKIGVERSRQAANTADLVLLTIDAATGWTTGDQE 323
Query: 180 IY 181
IY
Sbjct: 324 IY 325
>pdb|1U0L|A Chain A, Crystal Structure Of Yjeq From Thermotoga Maritima
pdb|1U0L|B Chain B, Crystal Structure Of Yjeq From Thermotoga Maritima
pdb|1U0L|C Chain C, Crystal Structure Of Yjeq From Thermotoga Maritima
Length = 301
Score = 32.7 bits (73), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 38/89 (42%), Gaps = 10/89 (11%)
Query: 96 AFAGRSNVGKSSMLNALT--RQWGVVRTSDK----PGLTQTINFFKLGTKLCLVDLPGYG 149
AG S VGKSS+LNA+ + V S+K T T K +VD PG
Sbjct: 173 TMAGLSGVGKSSLLNAINPGLKLRVSEVSEKLQRGRHTTTTAQLLKFDFGGYVVDTPG-- 230
Query: 150 FAYAKEEVKDAWEELVSISYRNFWSCTCF 178
+A E+ D E + ++ F CF
Sbjct: 231 --FANLEINDIEPEELKHYFKEFGDKQCF 257
>pdb|3CNL|A Chain A, Crystal Structure Of Gnp-Bound Ylqf From T. Maritima
pdb|3CNN|A Chain A, Gtp-Bound Structure Of Tm Ylqf
pdb|3CNO|A Chain A, Gdp-Bound Structue Of Tm Ylqf
Length = 262
Score = 32.3 bits (72), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 17/56 (30%), Positives = 29/56 (51%), Gaps = 1/56 (1%)
Query: 92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPG 147
L + G N GKS+++N L + +PG+T+ I +F L + ++D PG
Sbjct: 99 LARVLIVGVPNTGKSTIINKLKGKRAS-SVGAQPGITKGIQWFSLENGVKILDTPG 153
>pdb|2DYK|A Chain A, Crystal Structure Of N-Terminal Gtp-Binding Domain Of Enga
From Thermus Thermophilus Hb8
pdb|2DYK|B Chain B, Crystal Structure Of N-Terminal Gtp-Binding Domain Of Enga
From Thermus Thermophilus Hb8
Length = 161
Score = 32.3 bits (72), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 32/59 (54%), Gaps = 4/59 (6%)
Query: 92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGT---KLCLVDLPG 147
+ ++ GR NVGKSS+ N L ++ V +D PG+T+ + + T + LVD G
Sbjct: 1 MHKVVIVGRPNVGKSSLFNRLLKKRSAV-VADVPGVTRDLKEGVVETDRGRFLLVDTGG 58
>pdb|1T9H|A Chain A, The Crystal Structure Of Yloq, A Circularly Permuted
Gtpase
Length = 307
Score = 32.3 bits (72), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 15/27 (55%), Positives = 23/27 (85%), Gaps = 1/27 (3%)
Query: 97 FAGRSNVGKSSMLNALTRQWGVVRTSD 123
FAG+S VGKSS+LNA++ + G +RT++
Sbjct: 178 FAGQSGVGKSSLLNAISPELG-LRTNE 203
>pdb|3K53|A Chain A, Crystal Structure Of Nfeob From P. Furiosus
pdb|3K53|B Chain B, Crystal Structure Of Nfeob From P. Furiosus
pdb|3K53|C Chain C, Crystal Structure Of Nfeob From P. Furiosus
pdb|3K53|D Chain D, Crystal Structure Of Nfeob From P. Furiosus
Length = 271
Score = 32.0 bits (71), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 30/62 (48%), Gaps = 11/62 (17%)
Query: 92 LPEIAFAGRSNVGKSSMLNALT--RQ----WGVVRTSDKPGLTQTINFFKLGTKLCLVDL 145
L +A G NVGK+++ NALT RQ W V K G+ + + +VDL
Sbjct: 3 LKTVALVGNPNVGKTTIFNALTGLRQHVGNWPGVTVEKKEGIMEYRE-----KEFLVVDL 57
Query: 146 PG 147
PG
Sbjct: 58 PG 59
>pdb|2YKR|W Chain W, 30s Ribosomal Subunit With Rsga Bound In The Presence Of
Gmppnp
Length = 350
Score = 31.2 bits (69), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 19/36 (52%), Positives = 22/36 (61%), Gaps = 3/36 (8%)
Query: 97 FAGRSNVGKSSMLNALTRQWGVVRT---SDKPGLTQ 129
FAG+S VGKSS+LNAL + T SD GL Q
Sbjct: 212 FAGQSGVGKSSLLNALLGLQKEILTNDVSDNSGLGQ 247
>pdb|3B1V|A Chain A, Crystal Structure Of An S. Thermophilus Nfeob E67a Mutant
Bound To Mgmppnp
pdb|3B1W|A Chain A, Crystal Structure Of An S. Thermophilus Nfeob E67a Mutant
Bound To Gdp
pdb|3B1W|B Chain B, Crystal Structure Of An S. Thermophilus Nfeob E67a Mutant
Bound To Gdp
pdb|3B1W|C Chain C, Crystal Structure Of An S. Thermophilus Nfeob E67a Mutant
Bound To Gdp
pdb|3B1W|D Chain D, Crystal Structure Of An S. Thermophilus Nfeob E67a Mutant
Bound To Gdp
Length = 272
Score = 31.2 bits (69), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 37/78 (47%), Gaps = 5/78 (6%)
Query: 92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLT--QTINFFKLGTKLCLVDLPG-Y 148
+ EIA G N GK+S+ N +T R + PG+T + K L + DLPG Y
Sbjct: 3 MTEIALIGNPNSGKTSLFNLITGHNQ--RVGNWPGVTVERKSGLVKKNKDLEIQDLPGIY 60
Query: 149 GFAYAKEEVKDAWEELVS 166
+ E K A + L+S
Sbjct: 61 SMSPYSPEAKVARDYLLS 78
>pdb|1MKY|A Chain A, Structural Analysis Of The Domain Interactions In Der, A
Switch Protein Containing Two Gtpase Domains
Length = 439
Score = 30.8 bits (68), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 23/61 (37%), Positives = 31/61 (50%), Gaps = 6/61 (9%)
Query: 91 DLPEIAFAGRSNVGKSSMLNA-LTRQWGVVRTSDKPGLTQ---TINFFKLGTKLCLVDLP 146
D ++A GR NVGKS++ NA L ++ +V S PG T+ F G K VD
Sbjct: 179 DAIKVAIVGRPNVGKSTLFNAILNKERALV--SPIPGTTRDPVDDEVFIDGRKYVFVDTA 236
Query: 147 G 147
G
Sbjct: 237 G 237
Score = 28.5 bits (62), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 30/58 (51%), Gaps = 8/58 (13%)
Query: 95 IAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQ-----TINFFKLGTKLCLVDLPG 147
+ GR NVGKS++ N L ++ + D+ G+T+ T+ ++ G LVD G
Sbjct: 4 VLIVGRPNVGKSTLFNKLVKKKKAI-VEDEEGVTRDPVQDTVEWY--GKTFKLVDTCG 58
>pdb|3LX5|A Chain A, Crystal Structure Of Mgmppnp-Bound Nfeob From S.
Thermophilus
pdb|3LX8|A Chain A, Crystal Structure Of Gdp-Bound Nfeob From S. Thermophilus
pdb|3SS8|A Chain A, Crystal Structure Of Nfeob From S. Thermophilus Bound To
Gdp.Alf4- And K+
pdb|3SS8|B Chain B, Crystal Structure Of Nfeob From S. Thermophilus Bound To
Gdp.Alf4- And K+
Length = 272
Score = 30.4 bits (67), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 34/69 (49%), Gaps = 6/69 (8%)
Query: 92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLT--QTINFFKLGTKLCLVDLPG-Y 148
+ EIA G N GK+S+ N +T R + PG+T + K L + DLPG Y
Sbjct: 3 MTEIALIGNPNSGKTSLFNLITGHNQ--RVGNWPGVTVERKSGLVKKNKDLEIQDLPGIY 60
Query: 149 GFA-YAKEE 156
+ Y+ EE
Sbjct: 61 SMSPYSPEE 69
>pdb|2RCN|A Chain A, Crystal Structure Of The Ribosomal Interacting Gtpase Yjeq
From The Enterobacterial Species Salmonella Typhimurium
Length = 358
Score = 30.0 bits (66), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 15/27 (55%), Positives = 19/27 (70%)
Query: 97 FAGRSNVGKSSMLNALTRQWGVVRTSD 123
FAG+S VGKSS+LNAL + T+D
Sbjct: 220 FAGQSGVGKSSLLNALLGLQNEILTND 246
>pdb|4DCS|A Chain A, Crystal Structure Of B. Subtilis Enga In Complex With
Sulfate Ion And Gdp
pdb|4DCT|A Chain A, Crystal Structure Of B. Subtilis Enga In Complex With
Half-Occupacy Gdp
pdb|4DCU|A Chain A, Crystal Structure Of B. Subtilis Enga In Complex With Gdp
pdb|4DCV|A Chain A, Crystal Structure Of B. Subtilis Enga In Complex With
Gmppcp
Length = 456
Score = 30.0 bits (66), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
Query: 93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQ 129
P +A GR NVGKS++ N + + + D PG+T+
Sbjct: 24 PVVAIVGRPNVGKSTIFNRIAGER-ISIVEDTPGVTR 59
Score = 26.9 bits (58), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 21/31 (67%), Gaps = 1/31 (3%)
Query: 99 GRSNVGKSSMLNALTRQWGVVRTSDKPGLTQ 129
GR NVGKSS++NA+ + V+ S+ G T+
Sbjct: 202 GRPNVGKSSLVNAMLGEERVI-VSNVAGTTR 231
>pdb|2HJG|A Chain A, The Crystal Structure Of The B. Subtilis Yphc Gtpase In
Complex With Gdp
Length = 436
Score = 30.0 bits (66), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
Query: 93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQ 129
P +A GR NVGKS++ N + + + D PG+T+
Sbjct: 4 PVVAIVGRPNVGKSTIFNRIAGER-ISIVEDTPGVTR 39
>pdb|3B1X|A Chain A, Crystal Structure Of An S. Thermophilus Nfeob E66a Mutant
Bound To Gmppnp
pdb|3B1X|B Chain B, Crystal Structure Of An S. Thermophilus Nfeob E66a Mutant
Bound To Gmppnp
Length = 272
Score = 30.0 bits (66), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 28/58 (48%), Gaps = 4/58 (6%)
Query: 92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLT--QTINFFKLGTKLCLVDLPG 147
+ EIA G N GK+S+ N +T R + PG+T + K L + DLPG
Sbjct: 3 MTEIALIGNPNSGKTSLFNLITGHNQ--RVGNWPGVTVERKSGLVKKNKDLEIQDLPG 58
>pdb|4A2I|V Chain V, Cryo-Electron Microscopy Structure Of The 30s Subunit In
Complex With The Yjeq Biogenesis Factor
Length = 277
Score = 30.0 bits (66), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 13/16 (81%), Positives = 15/16 (93%)
Query: 97 FAGRSNVGKSSMLNAL 112
FAG+S VGKSS+LNAL
Sbjct: 165 FAGQSGVGKSSLLNAL 180
>pdb|3B5X|A Chain A, Crystal Structure Of Msba From Vibrio Cholerae
pdb|3B5X|B Chain B, Crystal Structure Of Msba From Vibrio Cholerae
Length = 582
Score = 29.6 bits (65), Expect = 1.0, Method: Composition-based stats.
Identities = 14/33 (42%), Positives = 18/33 (54%)
Query: 86 SFPAPDLPEIAFAGRSNVGKSSMLNALTRQWGV 118
SF P +A GRS GKS++ N TR + V
Sbjct: 363 SFSIPQGKTVALVGRSGSGKSTIANLFTRFYDV 395
>pdb|3B1Z|A Chain A, Crystal Structure Of An S. Thermophilus Nfeob T35s Mutant
Without Nucleotide
Length = 272
Score = 29.6 bits (65), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 32/73 (43%), Gaps = 14/73 (19%)
Query: 92 LPEIAFAGRSNVGKSSMLNALTRQ------WGVVRTSDKPGLTQTINFFKLGTKLCLVDL 145
+ EIA G N GK+S+ N +T W V K GL K L + DL
Sbjct: 3 MTEIALIGNPNSGKTSLFNLITGHNQRVGNWPGVSVERKSGL------VKKNKDLEIQDL 56
Query: 146 PG-YGFA-YAKEE 156
PG Y + Y+ EE
Sbjct: 57 PGIYSMSPYSPEE 69
>pdb|3B1Y|A Chain A, Crystal Structure Of An S. Thermophilus Nfeob T35a Mutant
Bound To Gdp
Length = 272
Score = 29.3 bits (64), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 32/73 (43%), Gaps = 14/73 (19%)
Query: 92 LPEIAFAGRSNVGKSSMLNALTRQ------WGVVRTSDKPGLTQTINFFKLGTKLCLVDL 145
+ EIA G N GK+S+ N +T W V K GL K L + DL
Sbjct: 3 MTEIALIGNPNSGKTSLFNLITGHNQRVGNWPGVAVERKSGL------VKKNKDLEIQDL 56
Query: 146 PG-YGFA-YAKEE 156
PG Y + Y+ EE
Sbjct: 57 PGIYSMSPYSPEE 69
>pdb|3H2Y|A Chain A, Crystal Structure Of Yqeh Gtpase From Bacillus Anthracis
With Dgdp Bound
Length = 368
Score = 29.3 bits (64), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 29/59 (49%), Gaps = 5/59 (8%)
Query: 94 EIAFAGRSNVGKSSMLNALTRQW-----GVVRTSDKPGLTQTINFFKLGTKLCLVDLPG 147
++ G +NVGKS+ +N +++ V+ TS PG T + L + L D PG
Sbjct: 162 DVYVVGCTNVGKSTFINRXIKEFSDETENVITTSHFPGTTLDLIDIPLDEESSLYDTPG 220
>pdb|1EGA|A Chain A, Crystal Structure Of A Widely Conserved Gtpase Era
pdb|1EGA|B Chain B, Crystal Structure Of A Widely Conserved Gtpase Era
pdb|1X1L|X Chain X, Interaction Of Era,A Gtpase Protein, With The 3'minor
Domain Of The 16s Rrna Within The Thermus Thermophilus
30s Subunit.
pdb|3IEU|A Chain A, Crystal Structure Of Era In Complex With Gdp
pdb|3IEU|B Chain B, Crystal Structure Of Era In Complex With Gdp
Length = 301
Score = 29.3 bits (64), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 13/21 (61%), Positives = 15/21 (71%)
Query: 95 IAFAGRSNVGKSSMLNALTRQ 115
IA GR NVGKS++LN L Q
Sbjct: 11 IAIVGRPNVGKSTLLNKLLGQ 31
>pdb|1X18|X Chain X, Contact Sites Of Era Gtpase On The Thermus Thermophilus
30s Subunit
Length = 292
Score = 29.3 bits (64), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 13/21 (61%), Positives = 15/21 (71%)
Query: 95 IAFAGRSNVGKSSMLNALTRQ 115
IA GR NVGKS++LN L Q
Sbjct: 8 IAIVGRPNVGKSTLLNKLLGQ 28
>pdb|3EC1|A Chain A, Structure Of Yqeh Gtpase From Geobacillus
Stearothermophilus (An Atnos1 ATNOA1 ORTHOLOG)
pdb|3EC1|B Chain B, Structure Of Yqeh Gtpase From Geobacillus
Stearothermophilus (An Atnos1 ATNOA1 ORTHOLOG)
Length = 369
Score = 28.9 bits (63), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 29/58 (50%), Gaps = 4/58 (6%)
Query: 94 EIAFAGRSNVGKSSMLNAL----TRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPG 147
++ G +NVGKS+ +N + T + V+ TS PG T + L + L D PG
Sbjct: 164 DVYVVGCTNVGKSTFINRIIEEATGKGNVITTSYFPGTTLDMIEIPLESGATLYDTPG 221
>pdb|3KXL|A Chain A, Crystal Structure Of Ssgbp Mutation Variant G235s
pdb|3KXL|B Chain B, Crystal Structure Of Ssgbp Mutation Variant G235s
Length = 364
Score = 28.5 bits (62), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 14/42 (33%), Positives = 22/42 (52%), Gaps = 12/42 (28%)
Query: 91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTIN 132
++P I G +N GK+S+ N+LT GLTQ ++
Sbjct: 178 NIPSIGIVGYTNSGKTSLFNSLT------------GLTQKVD 207
>pdb|3KXK|A Chain A, Crystal Structure Of Ssgbp Mutation Variant G235p
pdb|3KXK|B Chain B, Crystal Structure Of Ssgbp Mutation Variant G235p
Length = 364
Score = 28.5 bits (62), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 14/42 (33%), Positives = 22/42 (52%), Gaps = 12/42 (28%)
Query: 91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTIN 132
++P I G +N GK+S+ N+LT GLTQ ++
Sbjct: 178 NIPSIGIVGYTNSGKTSLFNSLT------------GLTQKVD 207
>pdb|2QTF|A Chain A, Crystal Structure Of A Gtp-Binding Protein From The
Hyperthermophilic Archaeon Sulfolobus Solfataricus
pdb|2QTH|A Chain A, Crystal Structure Of A Gtp-Binding Protein From The
Hyperthermophilic Archaeon Sulfolobus Solfataricus In
Complex With Gdp
pdb|3KXI|A Chain A, Crystal Structure Of Ssgbp And Gdp Complex
Length = 364
Score = 28.5 bits (62), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 14/42 (33%), Positives = 22/42 (52%), Gaps = 12/42 (28%)
Query: 91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTIN 132
++P I G +N GK+S+ N+LT GLTQ ++
Sbjct: 178 NIPSIGIVGYTNSGKTSLFNSLT------------GLTQKVD 207
>pdb|3IBY|A Chain A, Structure Of Cytosolic Domain Of L. Pneumophila Feob
pdb|3IBY|B Chain B, Structure Of Cytosolic Domain Of L. Pneumophila Feob
pdb|3IBY|C Chain C, Structure Of Cytosolic Domain Of L. Pneumophila Feob
pdb|3IBY|D Chain D, Structure Of Cytosolic Domain Of L. Pneumophila Feob
Length = 256
Score = 28.5 bits (62), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 27/52 (51%), Gaps = 5/52 (9%)
Query: 99 GRSNVGKSSMLNALTRQWGVVRTSDKPGLT--QTINFFKLGTKLC-LVDLPG 147
G N GK+++ NALT R + PG+T + F LG L + DLPG
Sbjct: 8 GNPNCGKTTLFNALTN--ANQRVGNWPGVTVEKKTGEFLLGEHLIEITDLPG 57
>pdb|3ZVR|A Chain A, Crystal Structure Of Dynamin
Length = 772
Score = 28.1 bits (61), Expect = 2.8, Method: Composition-based stats.
Identities = 18/48 (37%), Positives = 27/48 (56%), Gaps = 8/48 (16%)
Query: 91 DLPEIAFAGRSNVGKSSML------NALTRQWGVVRTSDKPGLTQTIN 132
DLP+IA G + GKSS+L + L R G+V + +P + Q +N
Sbjct: 50 DLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIV--TRRPLVLQLVN 95
>pdb|1XZP|A Chain A, Structure Of The Gtp-Binding Protein Trme From Thermotoga
Maritima
pdb|1XZQ|A Chain A, Structure Of The Gtp-binding Protein Trme From Thermotoga
Maritima Complexed With 5-formyl-thf
Length = 482
Score = 28.1 bits (61), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
Query: 95 IAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTI 131
+ G+ NVGKS++LN L + + T D PG T+ +
Sbjct: 246 MVIVGKPNVGKSTLLNRLLNEDRAIVT-DIPGTTRDV 281
>pdb|2AKA|B Chain B, Structure Of The Nucleotide-Free Myosin Ii Motor Domain
From Dictyostelium Discoideum Fused To The Gtpase Domain
Of Dynamin 1 From Rattus Norvegicus
Length = 299
Score = 27.7 bits (60), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 27/48 (56%), Gaps = 8/48 (16%)
Query: 91 DLPEIAFAGRSNVGKSSML------NALTRQWGVVRTSDKPGLTQTIN 132
DLP+IA G + GKSS+L + L R G+V + +P + Q +N
Sbjct: 25 DLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIV--TRRPLVLQLVN 70
>pdb|3ZYC|A Chain A, Dynamin 1 Gtpase Ged Fusion Dimer Complexed With Gmppcp
pdb|3ZYC|D Chain D, Dynamin 1 Gtpase Ged Fusion Dimer Complexed With Gmppcp
pdb|3ZYS|A Chain A, Human Dynamin 1 Deltaprd Polymer Stabilized With Gmppcp
pdb|3ZYS|D Chain D, Human Dynamin 1 Deltaprd Polymer Stabilized With Gmppcp
Length = 353
Score = 27.7 bits (60), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 27/48 (56%), Gaps = 8/48 (16%)
Query: 91 DLPEIAFAGRSNVGKSSML------NALTRQWGVVRTSDKPGLTQTIN 132
DLP+IA G + GKSS+L + L R G+V + +P + Q +N
Sbjct: 30 DLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIV--TRRPLVLQLVN 75
>pdb|3SNH|A Chain A, Crystal Structure Of Nucleotide-Free Human Dynamin1
Length = 743
Score = 27.7 bits (60), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 27/48 (56%), Gaps = 8/48 (16%)
Query: 91 DLPEIAFAGRSNVGKSSML------NALTRQWGVVRTSDKPGLTQTIN 132
DLP+IA G + GKSS+L + L R G+V + +P + Q +N
Sbjct: 27 DLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIV--TRRPLVLQLVN 72
>pdb|2X2E|A Chain A, Dynamin Gtpase Dimer, Long Axis Form
pdb|2X2E|D Chain D, Dynamin Gtpase Dimer, Long Axis Form
pdb|2X2F|A Chain A, Dynamin 1 Gtpase Dimer, Short Axis Form
pdb|2X2F|D Chain D, Dynamin 1 Gtpase Dimer, Short Axis Form
Length = 353
Score = 27.3 bits (59), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 27/48 (56%), Gaps = 8/48 (16%)
Query: 91 DLPEIAFAGRSNVGKSSML------NALTRQWGVVRTSDKPGLTQTIN 132
DLP+IA G + GKSS+L + L R G+V + +P + Q +N
Sbjct: 30 DLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIV--TRRPLVLQLVN 75
>pdb|2DWQ|A Chain A, Thermus Thermophilus Ychf Gtp-Binding Protein
pdb|2DWQ|B Chain B, Thermus Thermophilus Ychf Gtp-Binding Protein
Length = 368
Score = 27.3 bits (59), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 11/20 (55%), Positives = 14/20 (70%)
Query: 95 IAFAGRSNVGKSSMLNALTR 114
+ G NVGKS++ NALTR
Sbjct: 4 VGIVGLPNVGKSTLFNALTR 23
>pdb|3GEE|A Chain A, Crystal Structure Of Mnme From Chlorobium Tepidum In
Complex With Gdp And Folinic Acid
pdb|3GEI|A Chain A, Crystal Structure Of Mnme From Chlorobium Tepidum In
Complex With Gcp
pdb|3GEI|B Chain B, Crystal Structure Of Mnme From Chlorobium Tepidum In
Complex With Gcp
pdb|3GEI|C Chain C, Crystal Structure Of Mnme From Chlorobium Tepidum In
Complex With Gcp
Length = 476
Score = 27.3 bits (59), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
Query: 97 FAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQ 129
AG+ N GKS++LN L Q + S PG T+
Sbjct: 238 IAGKPNAGKSTLLNTLLGQERAI-VSHMPGTTR 269
>pdb|2DBY|A Chain A, Crystal Structure Of The Gtp-Binding Protein Ychf In
Complexed With Gdp
Length = 368
Score = 27.3 bits (59), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 11/20 (55%), Positives = 14/20 (70%)
Query: 95 IAFAGRSNVGKSSMLNALTR 114
+ G NVGKS++ NALTR
Sbjct: 4 VGIVGLPNVGKSTLFNALTR 23
>pdb|3TAH|A Chain A, Crystal Structure Of An S. Thermophilus Nfeob N11a Mutant
Bound To Mgdp
pdb|3TAH|B Chain B, Crystal Structure Of An S. Thermophilus Nfeob N11a Mutant
Bound To Mgdp
Length = 272
Score = 27.3 bits (59), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 33/69 (47%), Gaps = 6/69 (8%)
Query: 92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLT--QTINFFKLGTKLCLVDLPG-Y 148
+ EIA G GK+S+ N +T R + PG+T + K L + DLPG Y
Sbjct: 3 MTEIALIGNPASGKTSLFNLITGHNQ--RVGNWPGVTVERKSGLVKKNKDLEIQDLPGIY 60
Query: 149 GFA-YAKEE 156
+ Y+ EE
Sbjct: 61 SMSPYSPEE 69
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.138 0.416
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,946,521
Number of Sequences: 62578
Number of extensions: 172529
Number of successful extensions: 468
Number of sequences better than 100.0: 58
Number of HSP's better than 100.0 without gapping: 35
Number of HSP's successfully gapped in prelim test: 23
Number of HSP's that attempted gapping in prelim test: 426
Number of HSP's gapped (non-prelim): 61
length of query: 192
length of database: 14,973,337
effective HSP length: 93
effective length of query: 99
effective length of database: 9,153,583
effective search space: 906204717
effective search space used: 906204717
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 49 (23.5 bits)