Query 029512
Match_columns 192
No_of_seqs 207 out of 2497
Neff 7.7
Searched_HMMs 46136
Date Fri Mar 29 14:06:02 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029512.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/029512hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0218 Predicted GTPase [Gene 99.9 2.4E-23 5.1E-28 164.9 10.3 111 77-187 9-121 (200)
2 COG0486 ThdF Predicted GTPase 99.9 6.9E-22 1.5E-26 172.7 13.0 158 16-185 146-309 (454)
3 COG2262 HflX GTPases [General 99.9 3.4E-21 7.4E-26 166.0 11.0 169 9-187 110-286 (411)
4 PRK11058 GTPase HflX; Provisio 99.8 3.5E-19 7.5E-24 157.4 10.4 168 9-186 115-290 (426)
5 TIGR03156 GTP_HflX GTP-binding 99.8 8E-19 1.7E-23 151.7 10.3 168 9-186 107-282 (351)
6 PF02421 FeoB_N: Ferrous iron 99.7 1.5E-17 3.2E-22 128.4 10.1 88 93-185 1-91 (156)
7 PRK05291 trmE tRNA modificatio 99.7 2.6E-17 5.7E-22 146.5 12.5 159 15-186 143-308 (449)
8 TIGR00450 mnmE_trmE_thdF tRNA 99.7 3.5E-16 7.5E-21 139.0 13.1 159 15-186 135-296 (442)
9 PF01926 MMR_HSR1: 50S ribosom 99.7 3.6E-16 7.7E-21 114.1 10.7 89 94-185 1-92 (116)
10 COG1160 Predicted GTPases [Gen 99.7 3.2E-16 7E-21 137.0 9.0 89 93-184 4-95 (444)
11 PRK00454 engB GTP-binding prot 99.7 2.4E-15 5.2E-20 118.4 12.9 112 74-185 6-119 (196)
12 TIGR03598 GTPase_YsxC ribosome 99.6 1.2E-15 2.6E-20 119.4 10.4 98 87-184 13-112 (179)
13 COG1159 Era GTPase [General fu 99.6 1.6E-15 3.5E-20 126.5 10.0 88 93-184 7-97 (298)
14 KOG0410 Predicted GTP binding 99.6 1.2E-15 2.7E-20 128.3 7.8 170 10-187 98-272 (410)
15 KOG1191 Mitochondrial GTPase [ 99.6 1.6E-15 3.6E-20 133.2 8.8 139 33-182 211-358 (531)
16 COG1084 Predicted GTPase [Gene 99.6 3.9E-15 8.5E-20 125.5 10.7 106 75-184 148-259 (346)
17 PTZ00258 GTP-binding protein; 99.6 8.8E-15 1.9E-19 127.7 9.2 91 90-187 19-130 (390)
18 cd01852 AIG1 AIG1 (avrRpt2-ind 99.5 5.4E-14 1.2E-18 111.8 10.8 90 94-184 2-95 (196)
19 cd01900 YchF YchF subfamily. 99.5 1.2E-14 2.6E-19 121.7 7.1 85 95-186 1-106 (274)
20 TIGR00436 era GTP-binding prot 99.5 5.5E-14 1.2E-18 117.3 10.5 88 94-186 2-93 (270)
21 COG1160 Predicted GTPases [Gen 99.5 1.7E-14 3.6E-19 126.3 6.2 95 91-186 177-274 (444)
22 cd01858 NGP_1 NGP-1. Autoanti 99.5 4.6E-14 9.9E-19 108.5 7.8 57 91-148 101-157 (157)
23 PRK09601 GTP-binding protein Y 99.5 5E-14 1.1E-18 121.8 8.6 86 93-185 3-109 (364)
24 COG1161 Predicted GTPases [Gen 99.5 1.3E-13 2.8E-18 118.0 10.9 139 12-153 41-192 (322)
25 cd04178 Nucleostemin_like Nucl 99.5 7.4E-14 1.6E-18 109.5 7.5 57 91-148 116-172 (172)
26 PRK12297 obgE GTPase CgtA; Rev 99.5 1.9E-13 4.2E-18 120.7 10.5 85 94-185 160-249 (424)
27 cd01878 HflX HflX subfamily. 99.5 4.4E-13 9.6E-18 106.6 11.3 92 90-186 39-134 (204)
28 PRK12298 obgE GTPase CgtA; Rev 99.5 2E-13 4.3E-18 119.6 9.7 83 94-183 161-248 (390)
29 cd01876 YihA_EngB The YihA (En 99.5 5.6E-13 1.2E-17 100.9 11.0 92 94-185 1-94 (170)
30 PRK12299 obgE GTPase CgtA; Rev 99.5 2.1E-13 4.6E-18 117.3 9.5 88 92-186 158-250 (335)
31 COG0012 Predicted GTPase, prob 99.5 7.2E-14 1.6E-18 120.0 6.4 92 92-190 2-115 (372)
32 PRK04213 GTP-binding protein; 99.5 7.3E-13 1.6E-17 105.0 11.0 90 91-184 8-102 (201)
33 cd01853 Toc34_like Toc34-like 99.4 9.8E-13 2.1E-17 108.9 11.8 91 91-182 30-124 (249)
34 COG0370 FeoB Fe2+ transport sy 99.4 5.1E-13 1.1E-17 121.7 10.8 87 92-185 3-94 (653)
35 KOG1424 Predicted GTP-binding 99.4 1.3E-13 2.9E-18 121.8 5.7 60 92-152 314-373 (562)
36 cd01898 Obg Obg subfamily. Th 99.4 3.1E-13 6.7E-18 103.6 7.1 85 94-185 2-91 (170)
37 PRK12296 obgE GTPase CgtA; Rev 99.4 4.8E-13 1E-17 120.0 9.1 86 92-184 159-248 (500)
38 PRK09602 translation-associate 99.4 5.1E-13 1.1E-17 117.2 8.8 85 93-184 2-114 (396)
39 KOG2486 Predicted GTPase [Gene 99.4 4.3E-13 9.3E-18 111.0 7.6 100 86-185 130-232 (320)
40 KOG1423 Ras-like GTPase ERA [C 99.4 7.8E-13 1.7E-17 110.9 9.1 94 91-186 71-169 (379)
41 KOG1491 Predicted GTP-binding 99.4 3.9E-13 8.5E-18 113.8 7.3 95 90-191 18-133 (391)
42 COG1163 DRG Predicted GTPase [ 99.4 6.7E-13 1.4E-17 112.0 8.3 91 88-186 59-154 (365)
43 PRK09563 rbgA GTPase YlqF; Rev 99.4 7.8E-13 1.7E-17 111.5 8.3 62 90-152 119-180 (287)
44 cd04164 trmE TrmE (MnmE, ThdF, 99.4 3.7E-12 8.1E-17 95.7 11.2 90 93-186 2-94 (157)
45 cd01895 EngA2 EngA2 subfamily. 99.4 2.1E-12 4.6E-17 98.3 9.6 93 92-185 2-97 (174)
46 cd01897 NOG NOG1 is a nucleola 99.4 1.9E-12 4E-17 99.2 9.2 90 93-186 1-93 (168)
47 TIGR03594 GTPase_EngA ribosome 99.4 1.8E-12 3.8E-17 114.4 10.1 87 94-184 1-90 (429)
48 cd01857 HSR1_MMR1 HSR1/MMR1. 99.4 1.1E-12 2.5E-17 99.1 7.5 56 94-150 85-140 (141)
49 PRK00089 era GTPase Era; Revie 99.4 3E-12 6.5E-17 107.7 10.7 88 93-184 6-96 (292)
50 cd01899 Ygr210 Ygr210 subfamil 99.4 1.1E-12 2.3E-17 112.1 7.8 83 95-184 1-111 (318)
51 PRK00093 GTP-binding protein D 99.4 4E-12 8.6E-17 112.5 11.6 94 91-185 172-268 (435)
52 cd01849 YlqF_related_GTPase Yl 99.4 1.2E-12 2.6E-17 100.4 7.2 58 90-148 98-155 (155)
53 COG3596 Predicted GTPase [Gene 99.4 1.7E-12 3.7E-17 107.5 8.1 91 91-187 38-132 (296)
54 PRK03003 GTP-binding protein D 99.4 3.9E-12 8.5E-17 114.0 11.1 91 91-185 37-130 (472)
55 cd01855 YqeH YqeH. YqeH is an 99.4 1.2E-12 2.5E-17 103.5 6.7 57 92-148 127-190 (190)
56 PRK03003 GTP-binding protein D 99.4 2.5E-12 5.4E-17 115.3 9.6 94 91-185 210-306 (472)
57 TIGR03596 GTPase_YlqF ribosome 99.4 2.7E-12 5.9E-17 107.6 9.2 60 91-151 117-176 (276)
58 PRK15494 era GTPase Era; Provi 99.4 3.8E-12 8.3E-17 109.7 10.2 88 92-184 52-143 (339)
59 TIGR02729 Obg_CgtA Obg family 99.4 2E-12 4.4E-17 111.0 8.3 87 92-185 157-248 (329)
60 PRK00093 GTP-binding protein D 99.4 4.5E-12 9.7E-17 112.2 10.7 89 93-185 2-93 (435)
61 PRK12288 GTPase RsgA; Reviewed 99.3 1.8E-12 3.8E-17 112.1 7.4 86 94-186 207-303 (347)
62 cd01894 EngA1 EngA1 subfamily. 99.3 4.3E-12 9.2E-17 95.5 8.6 85 96-185 1-89 (157)
63 cd01896 DRG The developmentall 99.3 4.6E-12 9.9E-17 103.8 9.2 86 94-186 2-91 (233)
64 PF04548 AIG1: AIG1 family; I 99.3 5.9E-12 1.3E-16 101.6 9.1 89 94-183 2-94 (212)
65 cd04163 Era Era subfamily. Er 99.3 1.6E-11 3.4E-16 92.5 10.7 90 92-185 3-95 (168)
66 TIGR03594 GTPase_EngA ribosome 99.3 9.2E-12 2E-16 109.8 10.8 94 91-185 171-267 (429)
67 cd01881 Obg_like The Obg-like 99.3 2.1E-12 4.6E-17 99.2 5.7 82 97-185 1-87 (176)
68 PRK12289 GTPase RsgA; Reviewed 99.3 5.9E-12 1.3E-16 108.9 8.6 89 93-186 173-271 (352)
69 cd01879 FeoB Ferrous iron tran 99.3 7.1E-12 1.5E-16 94.7 7.8 85 97-186 1-88 (158)
70 PRK09518 bifunctional cytidyla 99.3 1.4E-11 3.1E-16 115.4 10.8 94 91-185 449-545 (712)
71 KOG2485 Conserved ATP/GTP bind 99.3 4.3E-12 9.4E-17 106.5 6.3 133 15-151 56-209 (335)
72 TIGR03597 GTPase_YqeH ribosome 99.3 1.1E-11 2.5E-16 107.6 9.1 59 93-151 155-217 (360)
73 TIGR00991 3a0901s02IAP34 GTP-b 99.3 3.3E-11 7.2E-16 102.2 11.3 88 91-181 37-127 (313)
74 TIGR00157 ribosome small subun 99.3 6.9E-12 1.5E-16 103.5 6.8 87 92-186 120-217 (245)
75 PRK09518 bifunctional cytidyla 99.3 3.4E-11 7.3E-16 112.9 12.2 90 91-184 274-366 (712)
76 PRK09554 feoB ferrous iron tra 99.3 2E-11 4.3E-16 115.0 10.0 89 93-186 4-99 (772)
77 cd01856 YlqF YlqF. Proteins o 99.3 2.2E-11 4.7E-16 95.0 8.1 59 90-149 113-171 (171)
78 COG1162 Predicted GTPases [Gen 99.2 1.2E-11 2.5E-16 104.1 6.5 89 92-186 164-262 (301)
79 TIGR00092 GTP-binding protein 99.2 1.3E-11 2.8E-16 107.0 6.0 92 93-190 3-115 (368)
80 cd01887 IF2_eIF5B IF2/eIF5B (i 99.2 1.1E-10 2.3E-15 89.2 10.1 80 93-185 1-86 (168)
81 PF03193 DUF258: Protein of un 99.2 6.8E-12 1.5E-16 97.2 3.4 74 93-166 36-119 (161)
82 TIGR00993 3a0901s04IAP86 chlor 99.2 1.8E-10 3.8E-15 105.7 13.0 89 93-182 119-211 (763)
83 cd04171 SelB SelB subfamily. 99.2 1E-10 2.2E-15 88.7 9.8 79 94-184 2-86 (164)
84 PRK13796 GTPase YqeH; Provisio 99.2 2.5E-11 5.3E-16 105.7 6.9 59 92-150 160-222 (365)
85 cd04157 Arl6 Arl6 subfamily. 99.2 1.7E-10 3.8E-15 87.5 9.7 81 94-186 1-82 (162)
86 cd04156 ARLTS1 ARLTS1 subfamil 99.2 1.6E-10 3.4E-15 87.8 9.4 81 94-186 1-81 (160)
87 cd04154 Arl2 Arl2 subfamily. 99.2 2.5E-10 5.3E-15 88.4 10.1 83 90-185 12-94 (173)
88 cd01859 MJ1464 MJ1464. This f 99.2 1E-10 2.2E-15 89.5 7.7 57 91-148 100-156 (156)
89 cd00154 Rab Rab family. Rab G 99.2 3E-10 6.4E-15 84.9 9.9 82 93-186 1-86 (159)
90 smart00178 SAR Sar1p-like memb 99.1 4E-10 8.7E-15 88.6 10.3 82 92-186 17-98 (184)
91 KOG1489 Predicted GTP-binding 99.1 4.9E-11 1.1E-15 100.5 5.2 87 92-185 196-287 (366)
92 cd01861 Rab6 Rab6 subfamily. 99.1 3.9E-10 8.5E-15 85.6 9.5 80 94-186 2-86 (161)
93 cd04119 RJL RJL (RabJ-Like) su 99.1 5.5E-10 1.2E-14 84.8 10.0 81 94-185 2-85 (168)
94 cd04161 Arl2l1_Arl13_like Arl2 99.1 5E-10 1.1E-14 86.5 9.8 80 94-186 1-80 (167)
95 cd01860 Rab5_related Rab5-rela 99.1 3.8E-10 8.2E-15 85.8 9.0 83 93-186 2-87 (163)
96 cd04155 Arl3 Arl3 subfamily. 99.1 5.7E-10 1.2E-14 85.9 10.0 83 90-185 12-94 (173)
97 cd01866 Rab2 Rab2 subfamily. 99.1 7.7E-10 1.7E-14 85.2 10.6 84 92-186 4-90 (168)
98 cd00880 Era_like Era (E. coli 99.1 5.1E-10 1.1E-14 83.0 9.2 84 97-186 1-89 (163)
99 cd04149 Arf6 Arf6 subfamily. 99.1 7.2E-10 1.6E-14 85.9 10.1 82 92-186 9-90 (168)
100 cd01854 YjeQ_engC YjeQ/EngC. 99.1 1.5E-10 3.3E-15 97.6 6.7 87 93-186 162-259 (287)
101 cd00878 Arf_Arl Arf (ADP-ribos 99.1 5.9E-10 1.3E-14 84.5 9.3 80 94-186 1-80 (158)
102 KOG2484 GTPase [General functi 99.1 4.1E-11 8.8E-16 103.4 3.1 62 91-153 251-312 (435)
103 PRK00098 GTPase RsgA; Reviewed 99.1 3.4E-10 7.4E-15 96.0 8.3 74 92-166 164-248 (298)
104 cd04153 Arl5_Arl8 Arl5/Arl8 su 99.1 8.5E-10 1.8E-14 85.7 9.9 82 92-186 15-96 (174)
105 cd04160 Arfrp1 Arfrp1 subfamil 99.1 5E-10 1.1E-14 85.6 8.5 81 94-185 1-86 (167)
106 TIGR00437 feoB ferrous iron tr 99.1 5.3E-10 1.1E-14 102.9 10.0 83 99-186 1-86 (591)
107 cd01868 Rab11_like Rab11-like. 99.1 1.3E-09 2.8E-14 83.3 10.4 83 93-186 4-89 (165)
108 cd01863 Rab18 Rab18 subfamily. 99.1 1.1E-09 2.4E-14 83.2 9.9 82 94-186 2-86 (161)
109 smart00175 RAB Rab subfamily o 99.1 1.4E-09 3.1E-14 82.4 10.5 81 93-186 1-86 (164)
110 cd01864 Rab19 Rab19 subfamily. 99.1 1.4E-09 3.1E-14 83.2 10.5 83 92-186 3-89 (165)
111 cd04166 CysN_ATPS CysN_ATPS su 99.1 3.2E-10 6.9E-15 91.1 6.9 80 94-185 1-113 (208)
112 PRK15467 ethanolamine utilizat 99.1 5.3E-10 1.1E-14 86.1 7.8 76 94-186 3-78 (158)
113 cd04104 p47_IIGP_like p47 (47- 99.1 7.3E-10 1.6E-14 88.2 8.6 85 93-183 2-91 (197)
114 cd04152 Arl4_Arl7 Arl4/Arl7 su 99.1 1.2E-09 2.7E-14 85.6 9.8 83 92-186 3-89 (183)
115 cd04151 Arl1 Arl1 subfamily. 99.1 1.2E-09 2.6E-14 83.2 9.4 79 94-185 1-79 (158)
116 PLN03118 Rab family protein; P 99.1 2E-09 4.3E-14 86.3 11.0 84 91-186 13-99 (211)
117 PF00735 Septin: Septin; Inte 99.1 3.9E-10 8.5E-15 94.9 7.2 64 93-157 5-82 (281)
118 cd01869 Rab1_Ypt1 Rab1/Ypt1 su 99.1 2E-09 4.4E-14 82.3 10.5 81 93-186 3-88 (166)
119 cd04159 Arl10_like Arl10-like 99.1 1.5E-09 3.2E-14 81.2 9.5 80 94-186 1-81 (159)
120 COG0536 Obg Predicted GTPase [ 99.0 1.9E-10 4.1E-15 97.9 4.9 86 94-186 161-251 (369)
121 PLN00223 ADP-ribosylation fact 99.0 1.9E-09 4.2E-14 84.6 10.3 82 92-186 17-98 (181)
122 cd01850 CDC_Septin CDC/Septin. 99.0 2E-09 4.3E-14 90.4 10.9 63 92-155 4-80 (276)
123 cd01889 SelB_euk SelB subfamil 99.0 6.1E-10 1.3E-14 88.0 7.4 80 94-184 2-103 (192)
124 KOG2423 Nucleolar GTPase [Gene 99.0 7.4E-11 1.6E-15 102.0 2.1 62 91-153 306-367 (572)
125 cd01867 Rab8_Rab10_Rab13_like 99.0 2.7E-09 5.8E-14 82.0 10.5 84 92-186 3-89 (167)
126 cd04138 H_N_K_Ras_like H-Ras/N 99.0 2E-09 4.3E-14 81.3 9.6 79 93-185 2-85 (162)
127 cd04122 Rab14 Rab14 subfamily. 99.0 3.2E-09 6.9E-14 81.4 10.5 83 93-186 3-88 (166)
128 cd04113 Rab4 Rab4 subfamily. 99.0 2.5E-09 5.4E-14 81.3 9.8 81 94-185 2-85 (161)
129 cd00881 GTP_translation_factor 99.0 1.5E-09 3.3E-14 84.1 8.7 81 94-185 1-98 (189)
130 KOG1547 Septin CDC10 and relat 99.0 2.5E-10 5.4E-15 93.2 4.3 65 91-156 45-122 (336)
131 cd04124 RabL2 RabL2 subfamily. 99.0 2.8E-09 6.1E-14 81.6 9.9 82 93-186 1-86 (161)
132 cd01865 Rab3 Rab3 subfamily. 99.0 2.8E-09 6E-14 81.8 9.9 83 93-186 2-87 (165)
133 KOG1490 GTP-binding protein CR 99.0 3.4E-10 7.4E-15 100.3 5.4 97 83-183 157-258 (620)
134 cd01862 Rab7 Rab7 subfamily. 99.0 4.4E-09 9.5E-14 80.5 10.7 81 94-186 2-86 (172)
135 TIGR02528 EutP ethanolamine ut 99.0 1.6E-09 3.4E-14 81.0 8.0 76 94-187 2-77 (142)
136 cd04127 Rab27A Rab27a subfamil 99.0 3.4E-09 7.4E-14 82.1 10.1 84 92-186 4-100 (180)
137 cd04145 M_R_Ras_like M-Ras/R-R 99.0 3.6E-09 7.7E-14 80.4 9.9 79 93-185 3-86 (164)
138 cd00879 Sar1 Sar1 subfamily. 99.0 4.2E-09 9.1E-14 82.5 10.5 81 92-185 19-99 (190)
139 cd04106 Rab23_lke Rab23-like s 99.0 3.9E-09 8.5E-14 80.1 9.9 80 94-186 2-88 (162)
140 cd04150 Arf1_5_like Arf1-Arf5- 99.0 4.1E-09 8.8E-14 80.8 10.1 80 94-186 2-81 (159)
141 PF10662 PduV-EutP: Ethanolami 99.0 1.4E-09 3.1E-14 82.6 7.3 76 93-187 2-78 (143)
142 PF00350 Dynamin_N: Dynamin fa 99.0 7.6E-10 1.6E-14 85.1 6.0 21 95-115 1-21 (168)
143 cd04162 Arl9_Arfrp2_like Arl9/ 99.0 2.6E-09 5.7E-14 82.3 8.9 81 94-186 1-81 (164)
144 PTZ00133 ADP-ribosylation fact 99.0 4.1E-09 8.8E-14 82.8 10.1 82 92-186 17-98 (182)
145 smart00177 ARF ARF-like small 99.0 4.4E-09 9.5E-14 81.9 10.1 82 92-186 13-94 (175)
146 cd04158 ARD1 ARD1 subfamily. 99.0 2.9E-09 6.2E-14 82.3 8.9 77 94-186 1-80 (169)
147 KOG2655 Septin family protein 99.0 1.1E-09 2.5E-14 94.3 7.0 100 90-192 19-136 (366)
148 PTZ00369 Ras-like protein; Pro 99.0 3.4E-09 7.4E-14 83.5 9.2 84 92-186 5-90 (189)
149 cd01893 Miro1 Miro1 subfamily. 99.0 2.1E-09 4.5E-14 82.7 7.5 82 94-186 2-84 (166)
150 cd01890 LepA LepA subfamily. 99.0 3.2E-09 7E-14 82.1 8.6 81 94-185 2-103 (179)
151 cd04110 Rab35 Rab35 subfamily. 99.0 6.9E-09 1.5E-13 82.5 10.7 84 92-186 6-92 (199)
152 cd04107 Rab32_Rab38 Rab38/Rab3 99.0 4.6E-09 9.9E-14 83.5 9.6 82 94-186 2-87 (201)
153 COG5019 CDC3 Septin family pro 99.0 1.9E-09 4.2E-14 92.5 7.8 100 90-192 21-140 (373)
154 cd04123 Rab21 Rab21 subfamily. 99.0 8.4E-09 1.8E-13 77.8 10.6 80 94-186 2-86 (162)
155 TIGR00231 small_GTP small GTP- 99.0 3.8E-09 8.2E-14 78.3 8.2 54 93-148 2-60 (161)
156 cd04115 Rab33B_Rab33A Rab33B/R 98.9 8.8E-09 1.9E-13 79.5 10.3 83 93-186 3-89 (170)
157 cd01891 TypA_BipA TypA (tyrosi 98.9 6E-09 1.3E-13 82.4 9.5 81 93-184 3-100 (194)
158 cd04175 Rap1 Rap1 subgroup. T 98.9 7.1E-09 1.5E-13 79.1 9.5 78 93-184 2-84 (164)
159 cd04109 Rab28 Rab28 subfamily. 98.9 8.3E-09 1.8E-13 83.1 10.3 79 94-185 2-86 (215)
160 smart00173 RAS Ras subfamily o 98.9 5.8E-09 1.3E-13 79.4 9.0 78 94-185 2-84 (164)
161 cd04125 RabA_like RabA-like su 98.9 8.6E-09 1.9E-13 80.9 10.1 82 93-186 1-86 (188)
162 cd04112 Rab26 Rab26 subfamily. 98.9 9.9E-09 2.1E-13 80.9 10.4 81 94-186 2-87 (191)
163 cd04142 RRP22 RRP22 subfamily. 98.9 7.4E-09 1.6E-13 82.7 9.6 88 94-186 2-94 (198)
164 cd04108 Rab36_Rab34 Rab34/Rab3 98.9 1.2E-08 2.6E-13 79.2 10.2 81 94-185 2-85 (170)
165 PF05049 IIGP: Interferon-indu 98.9 2.2E-09 4.7E-14 93.3 6.6 88 92-185 35-127 (376)
166 cd04136 Rap_like Rap-like subf 98.9 7.7E-09 1.7E-13 78.4 9.0 79 93-185 2-85 (163)
167 cd04144 Ras2 Ras2 subfamily. 98.9 7.5E-09 1.6E-13 81.6 9.1 78 94-185 1-83 (190)
168 PLN03110 Rab GTPase; Provision 98.9 1.2E-08 2.7E-13 82.3 10.5 83 92-185 12-97 (216)
169 cd04105 SR_beta Signal recogni 98.9 1.2E-08 2.6E-13 81.7 10.2 79 93-185 1-85 (203)
170 cd04101 RabL4 RabL4 (Rab-like4 98.9 1.5E-08 3.4E-13 77.1 10.2 81 94-186 2-89 (164)
171 cd04132 Rho4_like Rho4-like su 98.9 8.3E-09 1.8E-13 80.6 8.8 80 93-186 1-86 (187)
172 cd04116 Rab9 Rab9 subfamily. 98.9 7.7E-09 1.7E-13 79.4 8.5 84 91-185 4-90 (170)
173 cd04118 Rab24 Rab24 subfamily. 98.9 1.1E-08 2.4E-13 80.4 9.5 82 93-185 1-86 (193)
174 cd00876 Ras Ras family. The R 98.9 1.4E-08 2.9E-13 76.5 9.3 79 94-186 1-84 (160)
175 cd04114 Rab30 Rab30 subfamily. 98.9 1.7E-08 3.6E-13 77.3 9.9 81 92-185 7-92 (169)
176 cd01851 GBP Guanylate-binding 98.9 1.2E-08 2.6E-13 83.2 9.5 63 91-153 6-75 (224)
177 cd04139 RalA_RalB RalA/RalB su 98.9 1.9E-08 4.2E-13 76.1 9.8 79 94-186 2-85 (164)
178 PF00025 Arf: ADP-ribosylation 98.9 4E-09 8.7E-14 82.5 5.9 83 91-186 13-95 (175)
179 cd04177 RSR1 RSR1 subgroup. R 98.9 9.4E-09 2E-13 79.0 7.8 82 93-185 2-85 (168)
180 cd04176 Rap2 Rap2 subgroup. T 98.9 1.3E-08 2.9E-13 77.4 8.4 80 93-186 2-86 (163)
181 cd04147 Ras_dva Ras-dva subfam 98.9 1.5E-08 3.2E-13 80.4 9.0 78 94-185 1-83 (198)
182 PRK12317 elongation factor 1-a 98.8 7E-09 1.5E-13 91.8 7.5 83 91-184 5-119 (425)
183 cd00157 Rho Rho (Ras homology) 98.8 1.9E-08 4.2E-13 76.8 8.9 79 93-185 1-84 (171)
184 cd01884 EF_Tu EF-Tu subfamily. 98.8 1.1E-08 2.3E-13 81.8 7.6 81 93-184 3-100 (195)
185 cd00877 Ran Ran (Ras-related n 98.8 1.8E-08 4E-13 77.7 8.6 82 94-186 2-86 (166)
186 cd04117 Rab15 Rab15 subfamily. 98.8 3.9E-08 8.5E-13 75.3 10.3 82 94-186 2-86 (161)
187 cd04111 Rab39 Rab39 subfamily. 98.8 2.6E-08 5.6E-13 80.2 9.7 81 93-186 3-89 (211)
188 cd04140 ARHI_like ARHI subfami 98.8 1.8E-08 3.8E-13 77.3 8.3 83 93-186 2-86 (165)
189 PLN03071 GTP-binding nuclear p 98.8 2.8E-08 6E-13 80.5 9.8 85 91-186 12-99 (219)
190 cd04120 Rab12 Rab12 subfamily. 98.8 3.5E-08 7.5E-13 79.2 10.2 81 94-186 2-86 (202)
191 cd04137 RheB Rheb (Ras Homolog 98.8 2.6E-08 5.7E-13 77.2 9.0 54 93-149 2-60 (180)
192 cd04141 Rit_Rin_Ric Rit/Rin/Ri 98.8 4.2E-08 9E-13 76.3 10.1 83 93-186 3-87 (172)
193 PF08477 Miro: Miro-like prote 98.8 1.4E-08 3.1E-13 73.5 6.7 81 94-186 1-87 (119)
194 PLN03108 Rab family protein; P 98.8 5.6E-08 1.2E-12 78.1 10.7 83 92-186 6-92 (210)
195 TIGR00487 IF-2 translation ini 98.8 2.6E-08 5.7E-13 91.6 9.8 82 90-184 85-170 (587)
196 cd04128 Spg1 Spg1p. Spg1p (se 98.8 4.6E-08 1E-12 76.9 9.9 83 93-186 1-86 (182)
197 cd04146 RERG_RasL11_like RERG/ 98.8 2.9E-08 6.4E-13 75.9 8.4 80 94-186 1-85 (165)
198 cd04126 Rab20 Rab20 subfamily. 98.8 3.5E-08 7.6E-13 80.3 8.8 80 94-186 2-81 (220)
199 cd01874 Cdc42 Cdc42 subfamily. 98.8 3.1E-08 6.8E-13 77.2 8.2 80 93-186 2-86 (175)
200 smart00174 RHO Rho (Ras homolo 98.8 2E-08 4.3E-13 77.3 6.9 77 95-185 1-82 (174)
201 CHL00189 infB translation init 98.8 3.7E-08 8E-13 92.4 9.7 82 90-184 242-330 (742)
202 cd01871 Rac1_like Rac1-like su 98.8 5.1E-08 1.1E-12 75.9 8.8 83 93-186 2-86 (174)
203 PRK05306 infB translation init 98.7 3.2E-08 7E-13 93.5 8.8 82 90-184 288-372 (787)
204 CHL00071 tufA elongation facto 98.7 5.8E-08 1.3E-12 85.7 10.0 83 91-184 11-110 (409)
205 KOG1486 GTP-binding protein DR 98.7 1.3E-08 2.8E-13 83.8 5.4 90 89-186 59-153 (364)
206 KOG3859 Septins (P-loop GTPase 98.7 4.1E-09 8.9E-14 87.8 2.5 99 92-190 42-153 (406)
207 cd01886 EF-G Elongation factor 98.7 6.9E-08 1.5E-12 80.9 9.8 80 94-184 1-99 (270)
208 KOG0073 GTP-binding ADP-ribosy 98.7 5.8E-08 1.3E-12 74.9 8.4 82 92-186 16-97 (185)
209 cd04102 RabL3 RabL3 (Rab-like3 98.7 9.2E-08 2E-12 76.8 10.0 82 94-186 2-91 (202)
210 TIGR00491 aIF-2 translation in 98.7 5.3E-08 1.1E-12 89.6 9.5 80 91-184 3-104 (590)
211 cd01888 eIF2_gamma eIF2-gamma 98.7 5.7E-08 1.2E-12 77.7 8.6 22 94-115 2-23 (203)
212 smart00053 DYNc Dynamin, GTPas 98.7 1.1E-07 2.4E-12 78.4 10.3 26 90-115 24-49 (240)
213 cd04148 RGK RGK subfamily. Th 98.7 6.4E-08 1.4E-12 78.5 8.6 79 94-186 2-86 (221)
214 cd04135 Tc10 TC10 subfamily. 98.7 8.8E-08 1.9E-12 73.7 8.9 53 94-149 2-59 (174)
215 cd00882 Ras_like_GTPase Ras-li 98.7 2.3E-08 5.1E-13 72.9 5.3 77 97-186 1-82 (157)
216 TIGR00475 selB selenocysteine- 98.7 8.4E-08 1.8E-12 88.3 9.8 79 94-184 2-85 (581)
217 cd04121 Rab40 Rab40 subfamily. 98.7 1.1E-07 2.4E-12 75.5 9.0 84 92-186 6-92 (189)
218 cd04169 RF3 RF3 subfamily. Pe 98.7 1.9E-07 4.2E-12 78.0 10.6 81 93-184 3-106 (267)
219 PRK04004 translation initiatio 98.7 1.4E-07 2.9E-12 87.0 10.4 81 90-184 4-106 (586)
220 cd04174 Rnd1_Rho6 Rnd1/Rho6 su 98.7 1.1E-07 2.4E-12 78.0 8.9 84 92-186 13-98 (232)
221 cd04131 Rnd Rnd subfamily. Th 98.7 7.3E-08 1.6E-12 75.6 7.5 80 93-186 2-86 (178)
222 cd01892 Miro2 Miro2 subfamily. 98.7 1.4E-07 3E-12 73.0 9.0 82 92-186 4-91 (169)
223 cd04172 Rnd3_RhoE_Rho8 Rnd3/Rh 98.7 1.1E-07 2.4E-12 75.0 8.3 84 92-186 5-90 (182)
224 cd01882 BMS1 Bms1. Bms1 is an 98.7 1.3E-07 2.8E-12 77.1 8.9 79 90-184 37-115 (225)
225 PRK12735 elongation factor Tu; 98.7 1.1E-07 2.4E-12 83.7 9.1 83 91-184 11-110 (396)
226 cd01870 RhoA_like RhoA-like su 98.7 1E-07 2.2E-12 73.4 7.8 56 93-148 2-59 (175)
227 PLN00023 GTP-binding protein; 98.7 2.1E-07 4.5E-12 79.8 10.2 89 87-186 16-120 (334)
228 cd04134 Rho3 Rho3 subfamily. 98.7 9.5E-08 2.1E-12 75.3 7.6 82 94-186 2-85 (189)
229 TIGR02836 spore_IV_A stage IV 98.7 7E-08 1.5E-12 84.8 7.3 61 90-150 15-103 (492)
230 cd04130 Wrch_1 Wrch-1 subfamil 98.7 1.1E-07 2.5E-12 73.4 7.9 79 94-186 2-85 (173)
231 cd01875 RhoG RhoG subfamily. 98.6 1.7E-07 3.7E-12 74.1 8.9 83 93-186 4-88 (191)
232 cd04170 EF-G_bact Elongation f 98.6 2.2E-07 4.8E-12 77.3 10.0 81 94-185 1-100 (268)
233 cd04168 TetM_like Tet(M)-like 98.6 6.3E-08 1.4E-12 79.6 6.6 81 94-185 1-100 (237)
234 cd04173 Rnd2_Rho7 Rnd2/Rho7 su 98.6 2.5E-07 5.3E-12 75.4 9.7 83 93-186 2-86 (222)
235 PF00009 GTP_EFTU: Elongation 98.6 2.7E-07 5.8E-12 72.7 9.3 82 92-184 3-105 (188)
236 PF09439 SRPRB: Signal recogni 98.6 4.3E-08 9.3E-13 77.5 4.7 80 92-184 3-87 (181)
237 cd04143 Rhes_like Rhes_like su 98.6 2.7E-07 5.8E-12 76.3 9.4 79 94-186 2-85 (247)
238 cd01883 EF1_alpha Eukaryotic e 98.6 1.5E-07 3.2E-12 76.2 7.5 81 94-185 1-113 (219)
239 PRK00049 elongation factor Tu; 98.6 1.6E-07 3.4E-12 82.7 8.2 83 91-184 11-110 (396)
240 COG1100 GTPase SAR1 and relate 98.6 4.1E-07 8.9E-12 72.6 9.8 80 93-184 6-89 (219)
241 PRK10512 selenocysteinyl-tRNA- 98.6 3.2E-07 6.9E-12 84.9 9.4 79 94-184 2-86 (614)
242 PF00071 Ras: Ras family; Int 98.6 5.4E-07 1.2E-11 68.4 9.1 82 94-186 1-85 (162)
243 PLN03127 Elongation factor Tu; 98.5 6E-07 1.3E-11 80.2 10.5 83 91-184 60-159 (447)
244 PTZ00132 GTP-binding nuclear p 98.5 7.4E-07 1.6E-11 71.5 10.0 83 91-184 8-93 (215)
245 TIGR00483 EF-1_alpha translati 98.5 4.7E-07 1E-11 80.3 9.5 84 91-185 6-121 (426)
246 TIGR00484 EF-G translation elo 98.5 2.5E-07 5.3E-12 86.8 8.0 83 91-184 9-110 (689)
247 cd04167 Snu114p Snu114p subfam 98.5 1.6E-07 3.4E-12 75.6 5.5 81 94-185 2-107 (213)
248 PRK05506 bifunctional sulfate 98.5 1.7E-07 3.7E-12 87.0 6.5 82 91-184 23-139 (632)
249 PRK12736 elongation factor Tu; 98.5 5E-07 1.1E-11 79.4 8.7 83 91-184 11-110 (394)
250 PRK01889 GTPase RsgA; Reviewed 98.5 1.2E-07 2.5E-12 82.5 4.6 74 92-166 195-278 (356)
251 TIGR00485 EF-Tu translation el 98.5 6.9E-07 1.5E-11 78.5 9.2 83 91-184 11-110 (394)
252 cd04133 Rop_like Rop subfamily 98.5 1.1E-06 2.3E-11 69.0 9.0 83 93-186 2-86 (176)
253 PRK00007 elongation factor G; 98.5 8.5E-07 1.9E-11 83.2 10.0 82 91-183 9-109 (693)
254 PRK12739 elongation factor G; 98.5 7.9E-07 1.7E-11 83.4 9.7 83 91-184 7-108 (691)
255 TIGR01393 lepA GTP-binding pro 98.4 1.4E-06 3.1E-11 80.4 10.2 82 93-185 4-106 (595)
256 cd04103 Centaurin_gamma Centau 98.4 1.6E-06 3.5E-11 66.5 8.8 75 94-186 2-79 (158)
257 PLN03126 Elongation factor Tu; 98.4 1.8E-06 3.8E-11 77.8 10.3 83 91-184 80-179 (478)
258 smart00176 RAN Ran (Ras-relate 98.4 1.3E-06 2.8E-11 70.0 8.0 78 98-186 1-81 (200)
259 TIGR03680 eif2g_arch translati 98.4 7.7E-07 1.7E-11 78.6 7.3 83 92-185 4-116 (406)
260 cd01885 EF2 EF2 (for archaea a 98.4 9.3E-07 2E-11 72.1 7.2 79 94-184 2-108 (222)
261 KOG0084 GTPase Rab1/YPT1, smal 98.4 1.6E-06 3.4E-11 68.8 8.1 83 92-185 9-94 (205)
262 PRK05124 cysN sulfate adenylyl 98.4 2.9E-06 6.3E-11 76.4 10.9 83 91-184 26-142 (474)
263 PRK10218 GTP-binding protein; 98.4 2.5E-06 5.4E-11 78.9 10.5 82 92-184 5-103 (607)
264 KOG0074 GTP-binding ADP-ribosy 98.4 1.5E-06 3.2E-11 65.9 7.2 83 91-185 16-98 (185)
265 cd04129 Rho2 Rho2 subfamily. 98.4 2.5E-06 5.5E-11 66.9 8.9 55 94-148 3-59 (187)
266 KOG0070 GTP-binding ADP-ribosy 98.4 3.3E-07 7.2E-12 71.8 3.6 83 91-186 16-98 (181)
267 TIGR02034 CysN sulfate adenyly 98.4 1.6E-06 3.5E-11 76.5 8.4 80 94-184 2-115 (406)
268 TIGR01394 TypA_BipA GTP-bindin 98.4 3.1E-06 6.7E-11 78.2 10.4 81 93-184 2-99 (594)
269 PRK04000 translation initiatio 98.3 1.9E-06 4.1E-11 76.2 8.0 84 91-185 8-121 (411)
270 TIGR00503 prfC peptide chain r 98.3 5.6E-06 1.2E-10 75.5 10.6 82 92-184 11-115 (527)
271 COG2229 Predicted GTPase [Gene 98.3 6.1E-06 1.3E-10 64.9 9.1 85 91-187 9-106 (187)
272 PRK05433 GTP-binding protein L 98.3 4.6E-06 1E-10 77.1 9.9 84 91-185 6-110 (600)
273 KOG0080 GTPase Rab18, small G 98.3 3.8E-06 8.2E-11 65.0 7.7 84 92-187 11-98 (209)
274 KOG0094 GTPase Rab6/YPT6/Ryh1, 98.3 6.4E-06 1.4E-10 65.5 8.6 83 92-185 22-107 (221)
275 PF04670 Gtr1_RagA: Gtr1/RagA 98.3 3.2E-06 7E-11 69.3 7.2 84 94-184 1-88 (232)
276 KOG0394 Ras-related GTPase [Ge 98.2 3.6E-06 7.8E-11 66.3 6.9 58 90-147 7-67 (210)
277 PRK13351 elongation factor G; 98.2 5.9E-06 1.3E-10 77.5 9.4 84 91-185 7-109 (687)
278 PRK00741 prfC peptide chain re 98.2 9.7E-06 2.1E-10 73.9 10.3 82 92-184 10-114 (526)
279 KOG0090 Signal recognition par 98.2 3.8E-06 8.2E-11 67.6 5.8 78 92-182 38-118 (238)
280 KOG0092 GTPase Rab5/YPT51 and 98.2 2.7E-06 5.8E-11 67.3 4.6 57 92-148 5-64 (200)
281 KOG0075 GTP-binding ADP-ribosy 98.2 2E-06 4.3E-11 65.5 3.6 80 93-187 21-103 (186)
282 PTZ00141 elongation factor 1- 98.1 1.3E-05 2.9E-10 71.7 8.7 83 91-184 6-120 (446)
283 PTZ00416 elongation factor 2; 98.1 2E-05 4.4E-10 75.5 10.2 81 92-184 19-127 (836)
284 cd04165 GTPBP1_like GTPBP1-lik 98.1 3.2E-05 6.9E-10 63.1 9.5 21 94-114 1-21 (224)
285 KOG1487 GTP-binding protein DR 98.1 4.6E-06 1E-10 69.2 4.4 86 92-185 59-149 (358)
286 PLN00116 translation elongatio 98.1 3.1E-05 6.7E-10 74.3 10.5 82 91-184 18-133 (843)
287 TIGR00490 aEF-2 translation el 98.0 6.5E-06 1.4E-10 77.7 5.6 82 92-184 19-121 (720)
288 cd01873 RhoBTB RhoBTB subfamil 98.0 2E-05 4.3E-10 62.8 7.2 81 93-186 3-101 (195)
289 TIGR03348 VI_IcmF type VI secr 98.0 2.9E-05 6.2E-10 76.9 9.6 119 62-183 82-212 (1169)
290 PRK09866 hypothetical protein; 98.0 2.7E-05 5.8E-10 72.0 8.6 56 93-150 70-129 (741)
291 TIGR01425 SRP54_euk signal rec 98.0 9E-05 1.9E-09 65.9 11.4 88 92-184 100-224 (429)
292 KOG0095 GTPase Rab30, small G 98.0 5E-05 1.1E-09 58.2 8.1 77 92-183 7-90 (213)
293 KOG0098 GTPase Rab2, small G p 97.9 6.4E-05 1.4E-09 59.5 8.6 56 92-148 6-65 (216)
294 COG4917 EutP Ethanolamine util 97.9 2.5E-05 5.5E-10 58.1 5.2 76 93-185 2-77 (148)
295 KOG0078 GTP-binding protein SE 97.9 6.6E-05 1.4E-09 60.2 7.6 80 91-185 11-97 (207)
296 PRK07560 elongation factor EF- 97.8 8E-05 1.7E-09 70.5 9.3 83 91-184 19-122 (731)
297 PRK12740 elongation factor G; 97.8 9.2E-05 2E-09 69.3 8.6 77 98-185 1-96 (668)
298 COG5256 TEF1 Translation elong 97.8 0.00015 3.3E-09 63.6 9.0 85 91-186 6-122 (428)
299 PLN00043 elongation factor 1-a 97.8 0.00015 3.3E-09 64.9 9.1 83 91-184 6-120 (447)
300 KOG0086 GTPase Rab4, small G p 97.7 0.00026 5.6E-09 54.5 7.9 56 92-147 9-67 (214)
301 PRK14722 flhF flagellar biosyn 97.7 5.9E-05 1.3E-09 66.0 4.9 25 91-115 136-160 (374)
302 COG0532 InfB Translation initi 97.7 0.00029 6.3E-09 63.5 9.3 80 91-183 4-89 (509)
303 KOG1145 Mitochondrial translat 97.7 0.0003 6.5E-09 63.8 9.2 80 90-182 151-234 (683)
304 PTZ00327 eukaryotic translatio 97.7 0.00013 2.9E-09 65.5 7.0 26 91-116 33-58 (460)
305 PF03029 ATP_bind_1: Conserved 97.6 0.00019 4.1E-09 59.1 7.2 19 97-115 1-19 (238)
306 KOG0077 Vesicle coat complex C 97.6 0.0002 4.4E-09 55.7 6.8 82 92-186 20-101 (193)
307 PRK14721 flhF flagellar biosyn 97.6 0.00017 3.7E-09 64.0 7.3 25 91-115 190-214 (420)
308 PF00448 SRP54: SRP54-type pro 97.6 0.00026 5.6E-09 56.6 7.6 22 94-115 3-24 (196)
309 cd03112 CobW_like The function 97.6 0.00028 6E-09 54.4 7.2 23 93-115 1-23 (158)
310 KOG0071 GTP-binding ADP-ribosy 97.6 0.00025 5.4E-09 53.8 6.6 82 92-186 17-98 (180)
311 KOG0087 GTPase Rab11/YPT3, sma 97.6 0.00015 3.2E-09 58.3 5.3 56 92-148 14-73 (222)
312 PRK12724 flagellar biosynthesi 97.5 0.00033 7.3E-09 62.1 7.7 22 93-114 224-245 (432)
313 PRK10416 signal recognition pa 97.5 0.0012 2.7E-08 56.6 10.8 25 91-115 113-137 (318)
314 TIGR00064 ftsY signal recognit 97.5 0.00096 2.1E-08 56.0 9.8 92 91-184 71-202 (272)
315 KOG0448 Mitofusin 1 GTPase, in 97.5 0.00043 9.3E-09 64.0 8.0 24 92-115 109-132 (749)
316 cd00071 GMPK Guanosine monopho 97.5 0.00011 2.3E-09 55.4 3.4 53 95-147 2-55 (137)
317 COG1116 TauB ABC-type nitrate/ 97.5 8.1E-05 1.8E-09 61.3 2.8 25 92-116 29-53 (248)
318 KOG0458 Elongation factor 1 al 97.5 0.0005 1.1E-08 62.6 7.9 84 91-185 176-291 (603)
319 KOG0091 GTPase Rab39, small G 97.4 0.00023 5E-09 55.3 4.9 53 93-147 9-67 (213)
320 KOG0076 GTP-binding ADP-ribosy 97.4 0.00036 7.8E-09 54.7 5.8 84 92-186 17-106 (197)
321 COG5192 BMS1 GTP-binding prote 97.4 0.00043 9.2E-09 63.2 6.5 76 91-183 68-144 (1077)
322 PRK14737 gmk guanylate kinase; 97.4 0.00016 3.5E-09 57.3 3.3 40 91-131 3-42 (186)
323 COG1419 FlhF Flagellar GTP-bin 97.4 0.00059 1.3E-08 60.0 7.0 25 92-116 203-227 (407)
324 PRK11889 flhF flagellar biosyn 97.4 0.00035 7.5E-09 61.7 5.5 23 92-114 241-263 (436)
325 TIGR03263 guanyl_kin guanylate 97.3 0.00014 3E-09 56.5 2.4 24 93-116 2-25 (180)
326 PRK09435 membrane ATPase/prote 97.3 0.00079 1.7E-08 58.1 7.3 24 91-114 55-78 (332)
327 KOG1954 Endocytosis/signaling 97.3 0.00074 1.6E-08 58.8 7.0 27 90-116 56-82 (532)
328 KOG0079 GTP-binding protein H- 97.3 0.0013 2.8E-08 50.5 7.3 76 94-184 10-92 (198)
329 COG0194 Gmk Guanylate kinase [ 97.3 0.00013 2.8E-09 57.8 1.7 39 92-132 4-42 (191)
330 COG3840 ThiQ ABC-type thiamine 97.3 0.00026 5.6E-09 56.3 3.3 25 91-115 24-48 (231)
331 KOG0093 GTPase Rab3, small G p 97.2 0.0017 3.8E-08 49.7 7.5 54 92-148 21-80 (193)
332 PF00005 ABC_tran: ABC transpo 97.2 0.00033 7.1E-09 51.8 3.5 25 92-116 11-35 (137)
333 COG3523 IcmF Type VI protein s 97.2 0.001 2.2E-08 65.5 7.7 93 90-184 123-226 (1188)
334 PRK14738 gmk guanylate kinase; 97.2 0.00032 6.9E-09 56.3 3.2 25 91-115 12-36 (206)
335 PRK14723 flhF flagellar biosyn 97.2 0.00073 1.6E-08 64.0 5.9 24 92-115 185-208 (767)
336 COG1136 SalX ABC-type antimicr 97.2 0.00031 6.7E-09 57.4 2.9 25 92-116 31-55 (226)
337 KOG1707 Predicted Ras related/ 97.2 0.00074 1.6E-08 61.5 5.5 86 91-187 8-94 (625)
338 PRK05703 flhF flagellar biosyn 97.1 0.0013 2.9E-08 58.5 6.9 24 92-115 221-244 (424)
339 PRK13768 GTPase; Provisional 97.1 0.00091 2E-08 55.4 5.3 44 138-185 97-141 (253)
340 KOG0780 Signal recognition par 97.1 0.0022 4.8E-08 56.1 7.7 90 90-184 99-225 (483)
341 PF13555 AAA_29: P-loop contai 97.1 0.00071 1.5E-08 44.2 3.5 22 93-114 24-45 (62)
342 PF13207 AAA_17: AAA domain; P 97.1 0.00058 1.3E-08 49.4 3.3 22 94-115 1-22 (121)
343 PRK14974 cell division protein 97.0 0.00099 2.1E-08 57.6 5.1 23 92-114 140-162 (336)
344 PRK00300 gmk guanylate kinase; 97.0 0.00069 1.5E-08 53.7 3.9 26 91-116 4-29 (205)
345 TIGR00073 hypB hydrogenase acc 97.0 0.0005 1.1E-08 55.0 2.9 31 85-115 15-45 (207)
346 cd03222 ABC_RNaseL_inhibitor T 97.0 0.00066 1.4E-08 53.4 3.4 26 91-116 24-49 (177)
347 cd03255 ABC_MJ0796_Lo1CDE_FtsE 97.0 0.00069 1.5E-08 54.3 3.5 26 91-116 29-54 (218)
348 cd03225 ABC_cobalt_CbiO_domain 97.0 0.00068 1.5E-08 54.1 3.5 26 91-116 26-51 (211)
349 TIGR00960 3a0501s02 Type II (G 97.0 0.0007 1.5E-08 54.3 3.5 26 91-116 28-53 (216)
350 COG3839 MalK ABC-type sugar tr 97.0 0.00052 1.1E-08 59.3 2.8 25 92-116 29-53 (338)
351 cd03261 ABC_Org_Solvent_Resist 97.0 0.00071 1.5E-08 55.0 3.5 26 91-116 25-50 (235)
352 PRK00771 signal recognition pa 97.0 0.0065 1.4E-07 54.4 9.9 24 91-114 94-117 (437)
353 KOG0462 Elongation factor-type 97.0 0.0019 4E-08 58.7 6.3 86 87-184 55-160 (650)
354 cd03264 ABC_drug_resistance_li 97.0 0.00066 1.4E-08 54.2 3.2 23 94-116 27-49 (211)
355 KOG0461 Selenocysteine-specifi 97.0 0.0045 9.6E-08 53.7 8.2 82 91-183 6-104 (522)
356 PRK12726 flagellar biosynthesi 96.9 0.004 8.6E-08 54.8 8.0 24 91-114 205-228 (407)
357 PRK12723 flagellar biosynthesi 96.9 0.0052 1.1E-07 54.2 8.8 23 92-114 174-196 (388)
358 cd03260 ABC_PstB_phosphate_tra 96.9 0.00085 1.8E-08 54.2 3.6 25 91-115 25-49 (227)
359 cd03262 ABC_HisP_GlnQ_permease 96.9 0.00087 1.9E-08 53.5 3.5 26 91-116 25-50 (213)
360 TIGR02673 FtsE cell division A 96.9 0.00087 1.9E-08 53.6 3.5 26 91-116 27-52 (214)
361 cd03238 ABC_UvrA The excision 96.9 0.00093 2E-08 52.5 3.6 24 91-114 20-43 (176)
362 cd03265 ABC_DrrA DrrA is the A 96.9 0.0009 2E-08 53.8 3.6 25 92-116 26-50 (220)
363 cd03226 ABC_cobalt_CbiO_domain 96.9 0.00088 1.9E-08 53.3 3.4 26 91-116 25-50 (205)
364 TIGR01166 cbiO cobalt transpor 96.9 0.00093 2E-08 52.5 3.5 26 91-116 17-42 (190)
365 cd03292 ABC_FtsE_transporter F 96.9 0.00092 2E-08 53.4 3.5 26 91-116 26-51 (214)
366 TIGR02211 LolD_lipo_ex lipopro 96.9 0.00092 2E-08 53.7 3.5 26 91-116 30-55 (221)
367 TIGR02315 ABC_phnC phosphonate 96.9 0.00094 2E-08 54.4 3.5 26 91-116 27-52 (243)
368 cd03259 ABC_Carb_Solutes_like 96.9 0.00097 2.1E-08 53.3 3.5 26 91-116 25-50 (213)
369 TIGR03608 L_ocin_972_ABC putat 96.9 0.00093 2E-08 53.0 3.4 25 92-116 24-48 (206)
370 cd03269 ABC_putative_ATPase Th 96.9 0.00099 2.1E-08 53.1 3.5 26 91-116 25-50 (210)
371 PRK06731 flhF flagellar biosyn 96.9 0.0053 1.2E-07 51.5 7.9 25 91-115 74-98 (270)
372 cd03293 ABC_NrtD_SsuB_transpor 96.9 0.00097 2.1E-08 53.6 3.3 25 92-116 30-54 (220)
373 cd03221 ABCF_EF-3 ABCF_EF-3 E 96.9 0.0011 2.4E-08 50.1 3.4 26 91-116 25-50 (144)
374 cd03224 ABC_TM1139_LivF_branch 96.8 0.00096 2.1E-08 53.6 3.2 26 91-116 25-50 (222)
375 cd03216 ABC_Carb_Monos_I This 96.8 0.0011 2.4E-08 51.1 3.4 26 91-116 25-50 (163)
376 cd03263 ABC_subfamily_A The AB 96.8 0.0011 2.3E-08 53.3 3.5 25 92-116 28-52 (220)
377 cd03257 ABC_NikE_OppD_transpor 96.8 0.0011 2.3E-08 53.5 3.4 26 91-116 30-55 (228)
378 PRK15177 Vi polysaccharide exp 96.8 0.0011 2.3E-08 53.4 3.5 25 92-116 13-37 (213)
379 cd03258 ABC_MetN_methionine_tr 96.8 0.0011 2.4E-08 53.7 3.5 26 91-116 30-55 (233)
380 PF03205 MobB: Molybdopterin g 96.8 0.0012 2.5E-08 50.0 3.3 23 93-115 1-23 (140)
381 cd03218 ABC_YhbG The ABC trans 96.8 0.0012 2.5E-08 53.5 3.5 26 91-116 25-50 (232)
382 cd03235 ABC_Metallic_Cations A 96.8 0.0011 2.4E-08 52.9 3.3 26 91-116 24-49 (213)
383 cd03229 ABC_Class3 This class 96.8 0.0013 2.8E-08 51.3 3.5 25 91-115 25-49 (178)
384 PRK12727 flagellar biosynthesi 96.8 0.0032 6.9E-08 57.5 6.5 24 91-114 349-372 (559)
385 cd03301 ABC_MalK_N The N-termi 96.8 0.0012 2.7E-08 52.6 3.5 26 91-116 25-50 (213)
386 PRK13541 cytochrome c biogenes 96.8 0.0012 2.7E-08 52.1 3.5 26 91-116 25-50 (195)
387 cd03256 ABC_PhnC_transporter A 96.8 0.0012 2.6E-08 53.6 3.5 26 91-116 26-51 (241)
388 PRK14242 phosphate transporter 96.8 0.0012 2.6E-08 54.2 3.5 25 91-115 31-55 (253)
389 TIGR01978 sufC FeS assembly AT 96.8 0.0012 2.6E-08 53.7 3.5 25 91-115 25-49 (243)
390 TIGR01189 ccmA heme ABC export 96.8 0.0013 2.8E-08 52.1 3.5 26 91-116 25-50 (198)
391 cd01130 VirB11-like_ATPase Typ 96.8 0.0013 2.8E-08 51.8 3.5 24 92-115 25-48 (186)
392 PRK13540 cytochrome c biogenes 96.8 0.0013 2.9E-08 52.2 3.6 26 91-116 26-51 (200)
393 PRK11248 tauB taurine transpor 96.8 0.0013 2.7E-08 54.5 3.5 26 91-116 26-51 (255)
394 cd03254 ABCC_Glucan_exporter_l 96.8 0.0013 2.8E-08 53.1 3.5 26 91-116 28-53 (229)
395 cd03268 ABC_BcrA_bacitracin_re 96.8 0.0013 2.8E-08 52.4 3.5 26 91-116 25-50 (208)
396 TIGR00235 udk uridine kinase. 96.8 0.0011 2.4E-08 53.0 3.1 25 91-115 5-29 (207)
397 PRK11124 artP arginine transpo 96.8 0.0013 2.8E-08 53.7 3.5 26 91-116 27-52 (242)
398 cd03266 ABC_NatA_sodium_export 96.8 0.0013 2.8E-08 52.7 3.5 25 92-116 31-55 (218)
399 PRK10908 cell division protein 96.8 0.0013 2.9E-08 52.9 3.5 26 91-116 27-52 (222)
400 cd03219 ABC_Mj1267_LivG_branch 96.8 0.0012 2.6E-08 53.5 3.3 26 91-116 25-50 (236)
401 PRK10078 ribose 1,5-bisphospho 96.8 0.0012 2.5E-08 52.0 3.1 23 94-116 4-26 (186)
402 PRK11629 lolD lipoprotein tran 96.8 0.0014 2.9E-08 53.3 3.5 25 92-116 35-59 (233)
403 PRK11264 putative amino-acid A 96.8 0.0014 2.9E-08 53.7 3.5 26 91-116 28-53 (250)
404 PF00004 AAA: ATPase family as 96.8 0.0057 1.2E-07 44.3 6.5 22 95-116 1-22 (132)
405 cd03215 ABC_Carb_Monos_II This 96.8 0.0014 3E-08 51.3 3.4 26 91-116 25-50 (182)
406 PLN02772 guanylate kinase 96.8 0.0014 3.1E-08 57.6 3.8 43 91-133 134-176 (398)
407 PRK10584 putative ABC transpor 96.8 0.0014 3E-08 52.9 3.5 26 91-116 35-60 (228)
408 PRK14247 phosphate ABC transpo 96.8 0.0014 3E-08 53.8 3.5 26 91-116 28-53 (250)
409 TIGR02868 CydC thiol reductant 96.7 0.0012 2.6E-08 59.9 3.5 26 91-116 360-385 (529)
410 cd03296 ABC_CysA_sulfate_impor 96.7 0.0014 3E-08 53.4 3.5 26 91-116 27-52 (239)
411 PRK13539 cytochrome c biogenes 96.7 0.0015 3.1E-08 52.3 3.5 26 91-116 27-52 (207)
412 COG4988 CydD ABC-type transpor 96.7 0.0012 2.7E-08 60.1 3.4 27 90-116 345-371 (559)
413 cd03231 ABC_CcmA_heme_exporter 96.7 0.0015 3.1E-08 52.0 3.5 26 91-116 25-50 (201)
414 COG1120 FepC ABC-type cobalami 96.7 0.0014 3.1E-08 54.6 3.5 25 91-115 27-51 (258)
415 cd03236 ABC_RNaseL_inhibitor_d 96.7 0.0015 3.2E-08 54.3 3.6 26 91-116 25-50 (255)
416 PRK10895 lipopolysaccharide AB 96.7 0.0015 3.2E-08 53.3 3.5 26 91-116 28-53 (241)
417 PRK15056 manganese/iron transp 96.7 0.0014 3.1E-08 54.6 3.5 26 91-116 32-57 (272)
418 TIGR03864 PQQ_ABC_ATP ABC tran 96.7 0.0015 3.2E-08 53.1 3.5 26 91-116 26-51 (236)
419 cd03214 ABC_Iron-Siderophores_ 96.7 0.0016 3.4E-08 50.9 3.5 26 91-116 24-49 (180)
420 TIGR03410 urea_trans_UrtE urea 96.7 0.0015 3.2E-08 52.8 3.5 26 91-116 25-50 (230)
421 TIGR02770 nickel_nikD nickel i 96.7 0.0015 3.3E-08 53.0 3.5 26 91-116 11-36 (230)
422 TIGR02322 phosphon_PhnN phosph 96.7 0.0015 3.2E-08 50.8 3.3 22 94-115 3-24 (179)
423 COG1217 TypA Predicted membran 96.7 0.0066 1.4E-07 54.4 7.6 83 91-184 4-103 (603)
424 COG0480 FusA Translation elong 96.7 0.0046 9.9E-08 58.3 7.0 83 90-183 8-110 (697)
425 PRK14239 phosphate transporter 96.7 0.0015 3.3E-08 53.5 3.5 24 92-115 31-54 (252)
426 COG1117 PstB ABC-type phosphat 96.7 0.0037 8E-08 50.9 5.5 24 92-115 33-56 (253)
427 smart00382 AAA ATPases associa 96.7 0.0019 4E-08 46.3 3.5 24 93-116 3-26 (148)
428 cd03230 ABC_DR_subfamily_A Thi 96.7 0.0017 3.6E-08 50.4 3.4 26 91-116 25-50 (173)
429 cd03233 ABC_PDR_domain1 The pl 96.7 0.0015 3.3E-08 52.0 3.2 26 91-116 32-57 (202)
430 PRK14250 phosphate ABC transpo 96.7 0.0017 3.6E-08 53.2 3.5 26 91-116 28-53 (241)
431 PRK13543 cytochrome c biogenes 96.7 0.0017 3.7E-08 52.1 3.5 26 91-116 36-61 (214)
432 PRK14269 phosphate ABC transpo 96.7 0.0017 3.6E-08 53.3 3.5 25 91-115 27-51 (246)
433 PRK14262 phosphate ABC transpo 96.7 0.0017 3.6E-08 53.3 3.5 24 92-115 29-52 (250)
434 PRK14267 phosphate ABC transpo 96.7 0.0017 3.6E-08 53.4 3.5 26 91-116 29-54 (253)
435 cd03295 ABC_OpuCA_Osmoprotecti 96.7 0.0017 3.7E-08 53.0 3.6 26 91-116 26-51 (242)
436 PRK10247 putative ABC transpor 96.7 0.0017 3.7E-08 52.5 3.5 25 91-115 32-56 (225)
437 PRK14274 phosphate ABC transpo 96.7 0.0017 3.7E-08 53.6 3.5 25 91-115 37-61 (259)
438 PRK14273 phosphate ABC transpo 96.7 0.0017 3.6E-08 53.4 3.5 26 91-116 32-57 (254)
439 PRK09270 nucleoside triphospha 96.7 0.0046 9.9E-08 50.3 6.0 26 91-116 32-57 (229)
440 PRK14241 phosphate transporter 96.7 0.0016 3.5E-08 53.7 3.4 26 91-116 29-54 (258)
441 cd03294 ABC_Pro_Gly_Bertaine T 96.7 0.0017 3.6E-08 54.1 3.5 26 91-116 49-74 (269)
442 cd03249 ABC_MTABC3_MDL1_MDL2 M 96.7 0.0018 3.8E-08 52.7 3.6 26 91-116 28-53 (238)
443 PRK13538 cytochrome c biogenes 96.7 0.0018 3.8E-08 51.6 3.5 26 91-116 26-51 (204)
444 PRK10744 pstB phosphate transp 96.7 0.0017 3.6E-08 53.7 3.5 25 91-115 38-62 (260)
445 TIGR01184 ntrCD nitrate transp 96.7 0.0017 3.8E-08 52.7 3.5 25 92-116 11-35 (230)
446 TIGR00972 3a0107s01c2 phosphat 96.7 0.0018 3.8E-08 53.1 3.5 26 91-116 26-51 (247)
447 cd03217 ABC_FeS_Assembly ABC-t 96.7 0.0018 3.9E-08 51.5 3.5 25 91-115 25-49 (200)
448 cd03298 ABC_ThiQ_thiamine_tran 96.7 0.0018 3.9E-08 51.7 3.5 26 91-116 23-48 (211)
449 cd03369 ABCC_NFT1 Domain 2 of 96.7 0.0019 4E-08 51.5 3.6 26 91-116 33-58 (207)
450 cd03247 ABCC_cytochrome_bd The 96.7 0.0019 4.2E-08 50.3 3.5 26 91-116 27-52 (178)
451 PRK11247 ssuB aliphatic sulfon 96.7 0.0018 3.8E-08 53.8 3.5 26 91-116 37-62 (257)
452 PRK14256 phosphate ABC transpo 96.7 0.0018 3.9E-08 53.2 3.5 25 91-115 29-53 (252)
453 TIGR00959 ffh signal recogniti 96.6 0.0075 1.6E-07 53.8 7.7 23 92-114 99-121 (428)
454 PRK11300 livG leucine/isoleuci 96.6 0.0016 3.5E-08 53.5 3.2 26 91-116 30-55 (255)
455 cd03297 ABC_ModC_molybdenum_tr 96.6 0.0015 3.3E-08 52.3 3.0 24 93-116 24-47 (214)
456 cd03245 ABCC_bacteriocin_expor 96.6 0.0019 4.1E-08 51.8 3.5 26 91-116 29-54 (220)
457 cd03246 ABCC_Protease_Secretio 96.6 0.002 4.4E-08 50.0 3.6 26 91-116 27-52 (173)
458 cd03223 ABCD_peroxisomal_ALDP 96.6 0.002 4.3E-08 49.8 3.5 26 91-116 26-51 (166)
459 TIGR03005 ectoine_ehuA ectoine 96.6 0.0018 3.9E-08 53.2 3.5 26 91-116 25-50 (252)
460 TIGR01188 drrA daunorubicin re 96.6 0.0018 3.8E-08 54.9 3.5 26 91-116 18-43 (302)
461 PRK13638 cbiO cobalt transport 96.6 0.0017 3.7E-08 54.0 3.4 25 92-116 27-51 (271)
462 PRK14240 phosphate transporter 96.6 0.0018 4E-08 53.0 3.5 25 91-115 28-52 (250)
463 cd00820 PEPCK_HprK Phosphoenol 96.6 0.0016 3.5E-08 47.2 2.7 22 92-113 15-36 (107)
464 TIGR02324 CP_lyasePhnL phospho 96.6 0.0019 4.2E-08 52.0 3.5 26 91-116 33-58 (224)
465 PRK10867 signal recognition pa 96.6 0.024 5.2E-07 50.7 10.7 23 92-114 100-122 (433)
466 PRK10575 iron-hydroxamate tran 96.6 0.0018 3.8E-08 53.8 3.4 26 91-116 36-61 (265)
467 cd03237 ABC_RNaseL_inhibitor_d 96.6 0.0019 4.1E-08 53.2 3.5 24 92-115 25-48 (246)
468 TIGR03740 galliderm_ABC gallid 96.6 0.0019 4.2E-08 52.0 3.5 26 91-116 25-50 (223)
469 PRK13648 cbiO cobalt transport 96.6 0.0019 4.1E-08 53.7 3.5 26 91-116 34-59 (269)
470 PRK14235 phosphate transporter 96.6 0.0019 4.2E-08 53.6 3.6 26 91-116 44-69 (267)
471 PF13671 AAA_33: AAA domain; P 96.6 0.002 4.3E-08 47.8 3.3 22 94-115 1-22 (143)
472 PRK14245 phosphate ABC transpo 96.6 0.0019 4.1E-08 53.0 3.4 25 91-115 28-52 (250)
473 cd03251 ABCC_MsbA MsbA is an e 96.6 0.002 4.3E-08 52.2 3.5 26 91-116 27-52 (234)
474 PRK14248 phosphate ABC transpo 96.6 0.002 4.2E-08 53.6 3.5 25 91-115 46-70 (268)
475 PRK13645 cbiO cobalt transport 96.6 0.0018 3.9E-08 54.4 3.4 25 92-116 37-61 (289)
476 cd03290 ABCC_SUR1_N The SUR do 96.6 0.0021 4.5E-08 51.6 3.5 26 91-116 26-51 (218)
477 PRK10751 molybdopterin-guanine 96.6 0.0022 4.7E-08 50.4 3.5 25 91-115 5-29 (173)
478 PRK14259 phosphate ABC transpo 96.6 0.002 4.3E-08 53.7 3.5 25 91-115 38-62 (269)
479 PRK13632 cbiO cobalt transport 96.6 0.002 4.3E-08 53.7 3.5 26 91-116 34-59 (271)
480 PRK09544 znuC high-affinity zi 96.6 0.002 4.4E-08 53.2 3.5 26 91-116 29-54 (251)
481 TIGR02323 CP_lyasePhnK phospho 96.6 0.0019 4.2E-08 53.0 3.4 25 92-116 29-53 (253)
482 cd03253 ABCC_ATM1_transporter 96.6 0.0021 4.5E-08 52.1 3.5 26 91-116 26-51 (236)
483 cd03232 ABC_PDR_domain2 The pl 96.6 0.0019 4.2E-08 51.0 3.3 25 91-115 32-56 (192)
484 PRK11701 phnK phosphonate C-P 96.6 0.002 4.2E-08 53.2 3.4 26 91-116 31-56 (258)
485 TIGR01277 thiQ thiamine ABC tr 96.6 0.002 4.3E-08 51.6 3.3 26 91-116 23-48 (213)
486 PRK13547 hmuV hemin importer A 96.6 0.002 4.3E-08 53.9 3.5 26 91-116 26-51 (272)
487 PRK09493 glnQ glutamine ABC tr 96.6 0.0021 4.5E-08 52.4 3.5 26 91-116 26-51 (240)
488 PRK11231 fecE iron-dicitrate t 96.6 0.002 4.4E-08 53.0 3.5 25 91-115 27-51 (255)
489 PRK13646 cbiO cobalt transport 96.6 0.002 4.3E-08 54.2 3.4 26 91-116 32-57 (286)
490 PF02263 GBP: Guanylate-bindin 96.6 0.0034 7.4E-08 52.2 4.8 60 91-150 20-86 (260)
491 PRK14251 phosphate ABC transpo 96.6 0.0021 4.6E-08 52.7 3.6 25 92-116 30-54 (251)
492 PRK07261 topology modulation p 96.6 0.002 4.3E-08 50.2 3.2 22 94-115 2-23 (171)
493 COG3638 ABC-type phosphate/pho 96.6 0.0017 3.6E-08 53.5 2.8 24 92-115 30-53 (258)
494 TIGR02769 nickel_nikE nickel i 96.6 0.0021 4.5E-08 53.4 3.5 26 91-116 36-61 (265)
495 COG1126 GlnQ ABC-type polar am 96.6 0.0022 4.7E-08 52.2 3.5 24 92-115 28-51 (240)
496 cd03220 ABC_KpsT_Wzt ABC_KpsT_ 96.6 0.0021 4.6E-08 52.0 3.5 26 91-116 47-72 (224)
497 TIGR01288 nodI ATP-binding ABC 96.6 0.0021 4.4E-08 54.5 3.5 26 91-116 29-54 (303)
498 PRK13649 cbiO cobalt transport 96.6 0.002 4.4E-08 53.8 3.4 25 92-116 33-57 (280)
499 cd03244 ABCC_MRP_domain2 Domai 96.6 0.0023 4.9E-08 51.4 3.6 25 92-116 30-54 (221)
500 COG4987 CydC ABC-type transpor 96.6 0.0021 4.5E-08 58.3 3.6 26 91-116 363-388 (573)
No 1
>COG0218 Predicted GTPase [General function prediction only]
Probab=99.90 E-value=2.4e-23 Score=164.88 Aligned_cols=111 Identities=49% Similarity=0.747 Sum_probs=98.4
Q ss_pred HHHhcccccCCCCCCCCeEEEEecCCCcHHHHHHHHhhccCceeecCCCCceeEEEEEeeCCeEEEEECCCCCCCCChHH
Q 029512 77 FFAAAKVSSSFPAPDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYAKEE 156 (192)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~i~lvG~~n~GKStlin~L~~~~~~~~~~~~~g~T~~~~~~~~~~~~~lvDtPG~~~~~~~~~ 156 (192)
++.++......|....+.|+++|+||||||||||+|++....+.+|.+||.||.++++..+..+.+||.||||++.....
T Consensus 9 f~~sa~~~~~~P~~~~~EIaF~GRSNVGKSSlIN~l~~~k~LArtSktPGrTq~iNff~~~~~~~lVDlPGYGyAkv~k~ 88 (200)
T COG0218 9 FITSAPDIKQYPEDDLPEIAFAGRSNVGKSSLINALTNQKNLARTSKTPGRTQLINFFEVDDELRLVDLPGYGYAKVPKE 88 (200)
T ss_pred EEEecCCHhhCCCCCCcEEEEEccCcccHHHHHHHHhCCcceeecCCCCCccceeEEEEecCcEEEEeCCCcccccCCHH
Confidence 34444555667778899999999999999999999999867899999999999999999999999999999999877778
Q ss_pred HHHHHHHHHh--hhccCceeEEEEEEecCCceE
Q 029512 157 VKDAWEELVS--ISYRNFWSCTCFLIYIFYTNV 187 (192)
Q Consensus 157 ~~~~~~~~~~--l~~~~~~~~v~~vvD~s~~~~ 187 (192)
..+.|..++. |..+.++.+++++||++|+-.
T Consensus 89 ~~e~w~~~i~~YL~~R~~L~~vvlliD~r~~~~ 121 (200)
T COG0218 89 VKEKWKKLIEEYLEKRANLKGVVLLIDARHPPK 121 (200)
T ss_pred HHHHHHHHHHHHHhhchhheEEEEEEECCCCCc
Confidence 8899998888 888888999999999998753
No 2
>COG0486 ThdF Predicted GTPase [General function prediction only]
Probab=99.87 E-value=6.9e-22 Score=172.72 Aligned_cols=158 Identities=22% Similarity=0.207 Sum_probs=114.5
Q ss_pred cCCCCcccchhhhhhcCCCChhhhhhccceeecCCCCCCCCCCChHHHHHHHHHhhhhhHHHHHhcccccCCCCCCCCeE
Q 029512 16 IQPSPSILSFVEDNLLGRRRPIELRRAGYNIELSAPLDNIPFSTSSERERIEENIFRNKLEFFAAAKVSSSFPAPDLPEI 95 (192)
Q Consensus 16 ~~~~~~~l~~~~~~l~~r~~li~~~~~~~~~~l~~~~e~i~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 95 (192)
+..+.+.+..+...| |..++++.. .+|+.+|||+|+++.........-...+...--.++..+.+.... ..+.++
T Consensus 146 ~~~l~G~ls~~i~~l--r~~li~~~a-~vEa~IDfpeedi~~~~~~~i~~~l~~~~~~l~~ll~~~~~g~il--r~G~kv 220 (454)
T COG0486 146 LRQLQGALSQLINEL--REALLELLA-QVEANIDFPEEDIEELVLEKIREKLEELIAELDELLATAKQGKIL--REGLKV 220 (454)
T ss_pred HHHcCCcHHHHHHHH--HHHHHHHHH-HheEeCCCCcccccchhHHHHHHHHHHHHHHHHHHHHhhhhhhhh--hcCceE
Confidence 344555666777777 778888888 699999999998877655443222222222222233444333332 356799
Q ss_pred EEEecCCCcHHHHHHHHhhccCceeecCCCCceeEEEEEe---eCCeEEEEECCCCCCCCC---hHHHHHHHHHHHhhhc
Q 029512 96 AFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFK---LGTKLCLVDLPGYGFAYA---KEEVKDAWEELVSISY 169 (192)
Q Consensus 96 ~lvG~~n~GKStlin~L~~~~~~~~~~~~~g~T~~~~~~~---~~~~~~lvDtPG~~~~~~---~~~~~~~~~~~~~l~~ 169 (192)
+++|+||||||||+|+|++. ..++|++.||||||.-... .|.++.++||+|+..+.. ..++.+.|..
T Consensus 221 vIiG~PNvGKSSLLNaL~~~-d~AIVTdI~GTTRDviee~i~i~G~pv~l~DTAGiRet~d~VE~iGIeRs~~~------ 293 (454)
T COG0486 221 VIIGRPNVGKSSLLNALLGR-DRAIVTDIAGTTRDVIEEDINLNGIPVRLVDTAGIRETDDVVERIGIERAKKA------ 293 (454)
T ss_pred EEECCCCCcHHHHHHHHhcC-CceEecCCCCCccceEEEEEEECCEEEEEEecCCcccCccHHHHHHHHHHHHH------
Confidence 99999999999999999998 6799999999999987655 389999999999987432 3334455444
Q ss_pred cCceeEEEEEEecCCc
Q 029512 170 RNFWSCTCFLIYIFYT 185 (192)
Q Consensus 170 ~~~~~~v~~vvD~s~~ 185 (192)
.+.+|++++|+|++.+
T Consensus 294 i~~ADlvL~v~D~~~~ 309 (454)
T COG0486 294 IEEADLVLFVLDASQP 309 (454)
T ss_pred HHhCCEEEEEEeCCCC
Confidence 4568999999999985
No 3
>COG2262 HflX GTPases [General function prediction only]
Probab=99.85 E-value=3.4e-21 Score=165.99 Aligned_cols=169 Identities=21% Similarity=0.225 Sum_probs=126.8
Q ss_pred ccccccccCCCCcccchhhhhhcCCCChhhhhhccceeecCCCCCCCCCCChHHHHHHHHHhh--hhhHHHHHhcc--cc
Q 029512 9 KNAQFRAIQPSPSILSFVEDNLLGRRRPIELRRAGYNIELSAPLDNIPFSTSSERERIEENIF--RNKLEFFAAAK--VS 84 (192)
Q Consensus 9 ~~~~~~~~~~~~~~l~~~~~~l~~r~~li~~~~~~~~~~l~~~~e~i~~~~~~~~~~i~~~~~--~~~~~~~~~~~--~~ 84 (192)
+.+...++|++.+++.|..+|+.+....+ .+++..+..+.|.| ...+.+++.+..++. +..++.+...+ .+
T Consensus 110 A~S~EgkLQVeLAqL~Y~lpRl~~~~~~l--~~~GggiG~rGpGE---~~lE~drR~ir~rI~~i~~eLe~v~~~R~~~R 184 (411)
T COG2262 110 ARSREGKLQVELAQLRYELPRLVGSGSHL--SRLGGGIGFRGPGE---TQLETDRRRIRRRIAKLKRELENVEKAREPRR 184 (411)
T ss_pred hccchhhhhhhHHhhhhhhhHhHhhhhhc--ccccCCCCCCCCCc---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45667889999999999999997765554 45577778888887 344566777777773 34444444333 45
Q ss_pred cCCCCCCCCeEEEEecCCCcHHHHHHHHhhccCceeecCCCCceeEEEEE----eeCCeEEEEECCCCCCCCChHHHHHH
Q 029512 85 SSFPAPDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFF----KLGTKLCLVDLPGYGFAYAKEEVKDA 160 (192)
Q Consensus 85 ~~~~~~~~~~i~lvG~~n~GKStlin~L~~~~~~~~~~~~~g~T~~~~~~----~~~~~~~lvDtPG~~~~~~~~~~~~~ 160 (192)
..+.+.+.|.|+++||||+|||||+|+|++.. ..+.+..+.|-++..- ..|..+.+.||.||....+.. +..+
T Consensus 185 ~~R~~~~~p~vaLvGYTNAGKSTL~N~LT~~~--~~~~d~LFATLdpttR~~~l~~g~~vlLtDTVGFI~~LP~~-LV~A 261 (411)
T COG2262 185 KKRSRSGIPLVALVGYTNAGKSTLFNALTGAD--VYVADQLFATLDPTTRRIELGDGRKVLLTDTVGFIRDLPHP-LVEA 261 (411)
T ss_pred hhhcccCCCeEEEEeeccccHHHHHHHHhccC--eeccccccccccCceeEEEeCCCceEEEecCccCcccCChH-HHHH
Confidence 55666789999999999999999999999875 6677888877665422 236889999999998866544 3344
Q ss_pred HHHHHhhhccCceeEEEEEEecCCceE
Q 029512 161 WEELVSISYRNFWSCTCFLIYIFYTNV 187 (192)
Q Consensus 161 ~~~~~~l~~~~~~~~v~~vvD~s~~~~ 187 (192)
|.+- |++...+|++++|||+|+|+.
T Consensus 262 FksT--LEE~~~aDlllhVVDaSdp~~ 286 (411)
T COG2262 262 FKST--LEEVKEADLLLHVVDASDPEI 286 (411)
T ss_pred HHHH--HHHhhcCCEEEEEeecCChhH
Confidence 4333 778899999999999999953
No 4
>PRK11058 GTPase HflX; Provisional
Probab=99.79 E-value=3.5e-19 Score=157.41 Aligned_cols=168 Identities=17% Similarity=0.208 Sum_probs=113.1
Q ss_pred ccccccccCCCCcccchhhhhhcCCCChhhhhhccceeecCCCCCCCCCCChHHHHHHHHHhhh--hhHHHHHhccc--c
Q 029512 9 KNAQFRAIQPSPSILSFVEDNLLGRRRPIELRRAGYNIELSAPLDNIPFSTSSERERIEENIFR--NKLEFFAAAKV--S 84 (192)
Q Consensus 9 ~~~~~~~~~~~~~~l~~~~~~l~~r~~li~~~~~~~~~~l~~~~e~i~~~~~~~~~~i~~~~~~--~~~~~~~~~~~--~ 84 (192)
+.+...++|++.++++|..+|+.+. ..++.+++..+..+.|.|. ..+.+++.+..++.. ..+......+. +
T Consensus 115 A~t~e~klqvelA~l~y~~prl~~~--~~~l~~~~gg~g~~g~ge~---~~e~d~r~i~~ri~~l~~~L~~~~~~r~~~r 189 (426)
T PRK11058 115 ARTHEGKLQVELAQLRHLATRLVRG--WTHLERQKGGIGLRGPGET---QLETDRRLLRNRIVQILSRLERVEKQREQGR 189 (426)
T ss_pred cCChHHHHHHHHHhhhhhhhhhhcc--ccchhhhcCCCCCCCCChh---HhHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 4566788999999999999999654 3456666666777888763 334445556655532 22222222221 1
Q ss_pred cCCCCCCCCeEEEEecCCCcHHHHHHHHhhccCceeecCCCCceeEEEEEee---C-CeEEEEECCCCCCCCChHHHHHH
Q 029512 85 SSFPAPDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKL---G-TKLCLVDLPGYGFAYAKEEVKDA 160 (192)
Q Consensus 85 ~~~~~~~~~~i~lvG~~n~GKStlin~L~~~~~~~~~~~~~g~T~~~~~~~~---~-~~~~lvDtPG~~~~~~~~~~~~~ 160 (192)
..+...+.|+|+++|+||||||||+|+|++.. ..+.+.+|+|.++..... + ..+.++||||+....+.+ +...
T Consensus 190 ~~r~~~~~p~ValVG~~NaGKSSLlN~Lt~~~--~~v~~~~~tTld~~~~~i~l~~~~~~~l~DTaG~~r~lp~~-lve~ 266 (426)
T PRK11058 190 RARIKADVPTVSLVGYTNAGKSTLFNRITEAR--VYAADQLFATLDPTLRRIDVADVGETVLADTVGFIRHLPHD-LVAA 266 (426)
T ss_pred HHhhhcCCCEEEEECCCCCCHHHHHHHHhCCc--eeeccCCCCCcCCceEEEEeCCCCeEEEEecCcccccCCHH-HHHH
Confidence 11222456899999999999999999999974 347888898887754321 3 478999999985432332 2222
Q ss_pred HHHHHhhhccCceeEEEEEEecCCce
Q 029512 161 WEELVSISYRNFWSCTCFLIYIFYTN 186 (192)
Q Consensus 161 ~~~~~~l~~~~~~~~v~~vvD~s~~~ 186 (192)
|... +...+.+|++++|+|+++|+
T Consensus 267 f~~t--l~~~~~ADlIL~VvDaS~~~ 290 (426)
T PRK11058 267 FKAT--LQETRQATLLLHVVDAADVR 290 (426)
T ss_pred HHHH--HHHhhcCCEEEEEEeCCCcc
Confidence 3222 56678899999999999875
No 5
>TIGR03156 GTP_HflX GTP-binding protein HflX. This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like).
Probab=99.78 E-value=8e-19 Score=151.68 Aligned_cols=168 Identities=21% Similarity=0.226 Sum_probs=111.0
Q ss_pred ccccccccCCCCcccchhhhhhcCCCChhhhhhccceeecCCCCCCCCCCChHHHHHHHHHhh--hhhHHHHHhcc--cc
Q 029512 9 KNAQFRAIQPSPSILSFVEDNLLGRRRPIELRRAGYNIELSAPLDNIPFSTSSERERIEENIF--RNKLEFFAAAK--VS 84 (192)
Q Consensus 9 ~~~~~~~~~~~~~~l~~~~~~l~~r~~li~~~~~~~~~~l~~~~e~i~~~~~~~~~~i~~~~~--~~~~~~~~~~~--~~ 84 (192)
+.+...++|...+++.|..+++.+.. .++.+....++.++|+|+.. ..+++.+..++. +..+..+...+ .+
T Consensus 107 a~t~e~klqv~la~l~~~l~r~~~~~--~~l~~~~~~i~~~g~gE~~~---~~~~~~i~~ri~~l~~~L~~~~~~~~~~r 181 (351)
T TIGR03156 107 ARTHEGKLQVELAQLKYLLPRLVGGW--THLSRQGGGIGTRGPGETQL---ETDRRLIRERIAQLKKELEKVEKQRERQR 181 (351)
T ss_pred ccChHHHHHHHHHhccchhhhhhhhH--HHHHhhcCCCCCCCCChhHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44566788999999999999997643 23344344555677776322 333455555542 23333332222 22
Q ss_pred cCCCCCCCCeEEEEecCCCcHHHHHHHHhhccCceeecCCCCceeEEEEEe----eCCeEEEEECCCCCCCCChHHHHHH
Q 029512 85 SSFPAPDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFK----LGTKLCLVDLPGYGFAYAKEEVKDA 160 (192)
Q Consensus 85 ~~~~~~~~~~i~lvG~~n~GKStlin~L~~~~~~~~~~~~~g~T~~~~~~~----~~~~~~lvDtPG~~~~~~~~~~~~~ 160 (192)
..+.+.+.++|+++|+||||||||+|+|++.. ..+.+.+|+|+++.... .+..+.++||||+....+.+ ..+.
T Consensus 182 ~~r~~~~~~~ValvG~~NvGKSSLln~L~~~~--~~v~~~~~tT~d~~~~~i~~~~~~~i~l~DT~G~~~~l~~~-lie~ 258 (351)
T TIGR03156 182 RRRKRADVPTVALVGYTNAGKSTLFNALTGAD--VYAADQLFATLDPTTRRLDLPDGGEVLLTDTVGFIRDLPHE-LVAA 258 (351)
T ss_pred hhhcccCCcEEEEECCCCCCHHHHHHHHhCCc--eeeccCCccccCCEEEEEEeCCCceEEEEecCcccccCCHH-HHHH
Confidence 23333567899999999999999999999974 67788889888765322 36789999999985432332 2233
Q ss_pred HHHHHhhhccCceeEEEEEEecCCce
Q 029512 161 WEELVSISYRNFWSCTCFLIYIFYTN 186 (192)
Q Consensus 161 ~~~~~~l~~~~~~~~v~~vvD~s~~~ 186 (192)
+... +....++|++++|+|+++++
T Consensus 259 f~~t--le~~~~ADlil~VvD~s~~~ 282 (351)
T TIGR03156 259 FRAT--LEEVREADLLLHVVDASDPD 282 (351)
T ss_pred HHHH--HHHHHhCCEEEEEEECCCCc
Confidence 4333 44567899999999999875
No 6
>PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B ....
Probab=99.74 E-value=1.5e-17 Score=128.36 Aligned_cols=88 Identities=26% Similarity=0.218 Sum_probs=63.0
Q ss_pred CeEEEEecCCCcHHHHHHHHhhccCceeecCCCCceeEEEEEe---eCCeEEEEECCCCCCCCChHHHHHHHHHHHhhhc
Q 029512 93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFK---LGTKLCLVDLPGYGFAYAKEEVKDAWEELVSISY 169 (192)
Q Consensus 93 ~~i~lvG~~n~GKStlin~L~~~~~~~~~~~~~g~T~~~~~~~---~~~~~~lvDtPG~~~~~~~~~~~~~~~~~~~l~~ 169 (192)
.+|+++|+||||||||||+|+|.. +.++++||+|.+..... .+..+.++|+||+..........+...+++.
T Consensus 1 i~ialvG~PNvGKStLfN~Ltg~~--~~v~n~pG~Tv~~~~g~~~~~~~~~~lvDlPG~ysl~~~s~ee~v~~~~l~--- 75 (156)
T PF02421_consen 1 IRIALVGNPNVGKSTLFNALTGAK--QKVGNWPGTTVEKKEGIFKLGDQQVELVDLPGIYSLSSKSEEERVARDYLL--- 75 (156)
T ss_dssp -EEEEEESTTSSHHHHHHHHHTTS--EEEEESTTSSSEEEEEEEEETTEEEEEEE----SSSSSSSHHHHHHHHHHH---
T ss_pred CEEEEECCCCCCHHHHHHHHHCCC--ceecCCCCCCeeeeeEEEEecCceEEEEECCCcccCCCCCcHHHHHHHHHh---
Confidence 379999999999999999999985 88999999999987544 3789999999997653222222233333322
Q ss_pred cCceeEEEEEEecCCc
Q 029512 170 RNFWSCTCFLIYIFYT 185 (192)
Q Consensus 170 ~~~~~~v~~vvD~s~~ 185 (192)
....|++++|+|+++.
T Consensus 76 ~~~~D~ii~VvDa~~l 91 (156)
T PF02421_consen 76 SEKPDLIIVVVDATNL 91 (156)
T ss_dssp HTSSSEEEEEEEGGGH
T ss_pred hcCCCEEEEECCCCCH
Confidence 4568999999999864
No 7
>PRK05291 trmE tRNA modification GTPase TrmE; Reviewed
Probab=99.73 E-value=2.6e-17 Score=146.46 Aligned_cols=159 Identities=26% Similarity=0.259 Sum_probs=105.1
Q ss_pred ccCCCCcccchhhhhhcCCCChhhhhhccceeecCCCCCCCCCCChHHHHHHHHHh--hhhhHHHH-HhcccccCCCCCC
Q 029512 15 AIQPSPSILSFVEDNLLGRRRPIELRRAGYNIELSAPLDNIPFSTSSERERIEENI--FRNKLEFF-AAAKVSSSFPAPD 91 (192)
Q Consensus 15 ~~~~~~~~l~~~~~~l~~r~~li~~~~~~~~~~l~~~~e~i~~~~~~~~~~i~~~~--~~~~~~~~-~~~~~~~~~~~~~ 91 (192)
++..+.+.++.....| |.+++.+.. .+++.+|||+|+.+... ++.+..++ .+.++..+ ......... ..
T Consensus 143 al~~l~G~l~~~~~~~--r~~l~~~~a-~iea~iDf~ee~~~~~~---~~~i~~~i~~l~~~l~~l~~~~~~~~~~--~~ 214 (449)
T PRK05291 143 ALRQLQGALSKLINEL--REELLELLA-LVEAAIDFPEEDIEFLS---DEKILEKLEELIAELEALLASARQGEIL--RE 214 (449)
T ss_pred HHHhcCcHHHHHHHHH--HHHHHHHHH-HheEEccCCCCCccccc---HHHHHHHHHHHHHHHHHHHHHHHHHHHh--hc
Confidence 4555666777777777 667888776 79999999998765433 23333333 22233322 222222111 23
Q ss_pred CCeEEEEecCCCcHHHHHHHHhhccCceeecCCCCceeEEEEE---eeCCeEEEEECCCCCCCCChHHHHHH-HHHHHhh
Q 029512 92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFF---KLGTKLCLVDLPGYGFAYAKEEVKDA-WEELVSI 167 (192)
Q Consensus 92 ~~~i~lvG~~n~GKStlin~L~~~~~~~~~~~~~g~T~~~~~~---~~~~~~~lvDtPG~~~~~~~~~~~~~-~~~~~~l 167 (192)
.++|+++|++|+|||||+|+|++. ..+.+++.+|+|++.... ..+.++.++||||+.... +.+... +... +
T Consensus 215 ~~kV~ivG~~nvGKSSLln~L~~~-~~a~v~~~~gtT~d~~~~~i~~~g~~i~l~DT~G~~~~~--~~ie~~gi~~~--~ 289 (449)
T PRK05291 215 GLKVVIAGRPNVGKSSLLNALLGE-ERAIVTDIAGTTRDVIEEHINLDGIPLRLIDTAGIRETD--DEVEKIGIERS--R 289 (449)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC-CCcccCCCCCcccccEEEEEEECCeEEEEEeCCCCCCCc--cHHHHHHHHHH--H
Confidence 579999999999999999999997 456788999999886532 247789999999986522 111110 1111 3
Q ss_pred hccCceeEEEEEEecCCce
Q 029512 168 SYRNFWSCTCFLIYIFYTN 186 (192)
Q Consensus 168 ~~~~~~~~v~~vvD~s~~~ 186 (192)
...+.+|++++|+|++++.
T Consensus 290 ~~~~~aD~il~VvD~s~~~ 308 (449)
T PRK05291 290 EAIEEADLVLLVLDASEPL 308 (449)
T ss_pred HHHHhCCEEEEEecCCCCC
Confidence 4456789999999998764
No 8
>TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer.
Probab=99.69 E-value=3.5e-16 Score=139.00 Aligned_cols=159 Identities=19% Similarity=0.133 Sum_probs=102.7
Q ss_pred ccCCCCcccchhhhhhcCCCChhhhhhccceeecCCCCCCCCCCChHHHHHHHHHhhhhhHHHHHhcccccCCCCCCCCe
Q 029512 15 AIQPSPSILSFVEDNLLGRRRPIELRRAGYNIELSAPLDNIPFSTSSERERIEENIFRNKLEFFAAAKVSSSFPAPDLPE 94 (192)
Q Consensus 15 ~~~~~~~~l~~~~~~l~~r~~li~~~~~~~~~~l~~~~e~i~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (192)
++....+.+......| |..++++.. .+++.+|||+|+.+. ..-...+.. +...-..++... .... .....+
T Consensus 135 A~~~l~G~ls~~~~~~--r~~l~~~~a-~iea~iDf~ee~~~~--~~~~~~l~~-~~~~l~~ll~~~-~~~~--~~~g~k 205 (442)
T TIGR00450 135 ALNKLAGELDQKIEAI--RKSLLQLLA-QVEVNIDYEEDDDEQ--DSLNQLLLS-IIAELKDILNSY-KLEK--LDDGFK 205 (442)
T ss_pred HHHhcCcHHHHHHHHH--HHHHHHHHH-HeeEECCcCCCCccH--HHHHHHHHH-HHHHHHHHHHHH-HHHH--hhcCCE
Confidence 4445666666777777 778888888 799999999986432 111112211 111111222222 2111 134679
Q ss_pred EEEEecCCCcHHHHHHHHhhccCceeecCCCCceeEEEEEe---eCCeEEEEECCCCCCCCChHHHHHHHHHHHhhhccC
Q 029512 95 IAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFK---LGTKLCLVDLPGYGFAYAKEEVKDAWEELVSISYRN 171 (192)
Q Consensus 95 i~lvG~~n~GKStlin~L~~~~~~~~~~~~~g~T~~~~~~~---~~~~~~lvDtPG~~~~~~~~~~~~~~~~~~~l~~~~ 171 (192)
|+++|.+|||||||+|+|++. ..+.+++.+|+|++..... .+..+.+|||||+.... +... .+.--......+
T Consensus 206 VvIvG~~nvGKSSLiN~L~~~-~~aivs~~pgtTrd~~~~~i~~~g~~v~l~DTaG~~~~~--~~ie-~~gi~~~~~~~~ 281 (442)
T TIGR00450 206 LAIVGSPNVGKSSLLNALLKQ-DRAIVSDIKGTTRDVVEGDFELNGILIKLLDTAGIREHA--DFVE-RLGIEKSFKAIK 281 (442)
T ss_pred EEEECCCCCcHHHHHHHHhCC-CCcccCCCCCcEEEEEEEEEEECCEEEEEeeCCCcccch--hHHH-HHHHHHHHHHHh
Confidence 999999999999999999997 4577899999999875433 37789999999987532 1111 111001133456
Q ss_pred ceeEEEEEEecCCce
Q 029512 172 FWSCTCFLIYIFYTN 186 (192)
Q Consensus 172 ~~~~v~~vvD~s~~~ 186 (192)
.+|++++|+|++.+.
T Consensus 282 ~aD~il~V~D~s~~~ 296 (442)
T TIGR00450 282 QADLVIYVLDASQPL 296 (442)
T ss_pred hCCEEEEEEECCCCC
Confidence 789999999998654
No 9
>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....
Probab=99.68 E-value=3.6e-16 Score=114.07 Aligned_cols=89 Identities=25% Similarity=0.351 Sum_probs=67.6
Q ss_pred eEEEEecCCCcHHHHHHHHhhccCceeecCCCCceeEEEEEe---eCCeEEEEECCCCCCCCChHHHHHHHHHHHhhhcc
Q 029512 94 EIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFK---LGTKLCLVDLPGYGFAYAKEEVKDAWEELVSISYR 170 (192)
Q Consensus 94 ~i~lvG~~n~GKStlin~L~~~~~~~~~~~~~g~T~~~~~~~---~~~~~~lvDtPG~~~~~~~~~~~~~~~~~~~l~~~ 170 (192)
+|+++|.+|+|||||+|+|++. ....++..+++|++..... .+..+.++||||+..........+.+..+ +...
T Consensus 1 ~V~iiG~~~~GKSTlin~l~~~-~~~~~~~~~~~T~~~~~~~~~~~~~~~~~vDtpG~~~~~~~~~~~~~~~~~--~~~~ 77 (116)
T PF01926_consen 1 RVAIIGRPNVGKSTLINALTGK-KLAKVSNIPGTTRDPVYGQFEYNNKKFILVDTPGINDGESQDNDGKEIRKF--LEQI 77 (116)
T ss_dssp EEEEEESTTSSHHHHHHHHHTS-TSSEESSSTTSSSSEEEEEEEETTEEEEEEESSSCSSSSHHHHHHHHHHHH--HHHH
T ss_pred CEEEECCCCCCHHHHHHHHhcc-ccccccccccceeeeeeeeeeeceeeEEEEeCCCCcccchhhHHHHHHHHH--HHHH
Confidence 5899999999999999999996 4678999999999884432 36778999999998754433322233333 3445
Q ss_pred CceeEEEEEEecCCc
Q 029512 171 NFWSCTCFLIYIFYT 185 (192)
Q Consensus 171 ~~~~~v~~vvD~s~~ 185 (192)
..+|++++|+|++++
T Consensus 78 ~~~d~ii~vv~~~~~ 92 (116)
T PF01926_consen 78 SKSDLIIYVVDASNP 92 (116)
T ss_dssp CTESEEEEEEETTSH
T ss_pred HHCCEEEEEEECCCC
Confidence 788999999998763
No 10
>COG1160 Predicted GTPases [General function prediction only]
Probab=99.66 E-value=3.2e-16 Score=137.00 Aligned_cols=89 Identities=28% Similarity=0.382 Sum_probs=68.8
Q ss_pred CeEEEEecCCCcHHHHHHHHhhccCceeecCCCCceeEEEEEe---eCCeEEEEECCCCCCCCChHHHHHHHHHHHhhhc
Q 029512 93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFK---LGTKLCLVDLPGYGFAYAKEEVKDAWEELVSISY 169 (192)
Q Consensus 93 ~~i~lvG~~n~GKStlin~L~~~~~~~~~~~~~g~T~~~~~~~---~~~~~~lvDtPG~~~~~~~~~~~~~~~~~~~l~~ 169 (192)
+.|+|||+||||||||+|+|++. +.+.|++.||+|||..+.. .+..+.++||+|+..... +.+...+..-. +..
T Consensus 4 ~~VAIVGRPNVGKSTLFNRL~g~-r~AIV~D~pGvTRDr~y~~~~~~~~~f~lIDTgGl~~~~~-~~l~~~i~~Qa-~~A 80 (444)
T COG1160 4 PVVAIVGRPNVGKSTLFNRLTGR-RIAIVSDTPGVTRDRIYGDAEWLGREFILIDTGGLDDGDE-DELQELIREQA-LIA 80 (444)
T ss_pred CEEEEECCCCCcHHHHHHHHhCC-eeeEeecCCCCccCCccceeEEcCceEEEEECCCCCcCCc-hHHHHHHHHHH-HHH
Confidence 78999999999999999999998 7899999999999986544 478899999999975332 22222111110 344
Q ss_pred cCceeEEEEEEecCC
Q 029512 170 RNFWSCTCFLIYIFY 184 (192)
Q Consensus 170 ~~~~~~v~~vvD~s~ 184 (192)
...+|++++|+|++.
T Consensus 81 i~eADvilfvVD~~~ 95 (444)
T COG1160 81 IEEADVILFVVDGRE 95 (444)
T ss_pred HHhCCEEEEEEeCCC
Confidence 567899999999864
No 11
>PRK00454 engB GTP-binding protein YsxC; Reviewed
Probab=99.65 E-value=2.4e-15 Score=118.41 Aligned_cols=112 Identities=47% Similarity=0.716 Sum_probs=82.5
Q ss_pred hHHHHHhcccccCCCCCCCCeEEEEecCCCcHHHHHHHHhhccCceeecCCCCceeEEEEEeeCCeEEEEECCCCCCCCC
Q 029512 74 KLEFFAAAKVSSSFPAPDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYA 153 (192)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~~~i~lvG~~n~GKStlin~L~~~~~~~~~~~~~g~T~~~~~~~~~~~~~lvDtPG~~~~~~ 153 (192)
+..+..++......+....++|+++|.+|+|||||+|+|++......+++.+|+|++..++..+..+.+|||||+.....
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~v~ivG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~~~~l~l~DtpG~~~~~~ 85 (196)
T PRK00454 6 NAEFVTSAPKLEQLPPDDGPEIAFAGRSNVGKSSLINALTNRKNLARTSKTPGRTQLINFFEVNDKLRLVDLPGYGYAKV 85 (196)
T ss_pred HHHHHHhhccHhhCCCCCCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCceeEEEEEecCCeEEEeCCCCCCCcCC
Confidence 34444444434444556778999999999999999999999733567788889999988777778999999999876443
Q ss_pred hHHHHHHHHHHHh--hhccCceeEEEEEEecCCc
Q 029512 154 KEEVKDAWEELVS--ISYRNFWSCTCFLIYIFYT 185 (192)
Q Consensus 154 ~~~~~~~~~~~~~--l~~~~~~~~v~~vvD~s~~ 185 (192)
.......|..+.. +.....++++++++|++.+
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~ 119 (196)
T PRK00454 86 SKEEKEKWQKLIEEYLRTRENLKGVVLLIDSRHP 119 (196)
T ss_pred CchHHHHHHHHHHHHHHhCccceEEEEEEecCCC
Confidence 3333445544444 5666777889999997764
No 12
>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB. Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes.
Probab=99.65 E-value=1.2e-15 Score=119.42 Aligned_cols=98 Identities=49% Similarity=0.771 Sum_probs=75.9
Q ss_pred CCCCCCCeEEEEecCCCcHHHHHHHHhhccCceeecCCCCceeEEEEEeeCCeEEEEECCCCCCCCChHHHHHHHHHHHh
Q 029512 87 FPAPDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVS 166 (192)
Q Consensus 87 ~~~~~~~~i~lvG~~n~GKStlin~L~~~~~~~~~~~~~g~T~~~~~~~~~~~~~lvDtPG~~~~~~~~~~~~~~~~~~~ 166 (192)
.++...++|+++|.+|+|||||+|+|++......+++.+|+|+++.++..+..+.+|||||++...........|..+..
T Consensus 13 ~~~~~~~~i~ivG~~~~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~ 92 (179)
T TIGR03598 13 LPPDDGPEIAFAGRSNVGKSSLINALTNRKKLARTSKTPGRTQLINFFEVNDGFRLVDLPGYGYAKVSKEEKEKWQKLIE 92 (179)
T ss_pred CCCCCCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCcceEEEEEEeCCcEEEEeCCCCccccCChhHHHHHHHHHH
Confidence 44566789999999999999999999997435667788899999887766678999999999775444444455555443
Q ss_pred --hhccCceeEEEEEEecCC
Q 029512 167 --ISYRNFWSCTCFLIYIFY 184 (192)
Q Consensus 167 --l~~~~~~~~v~~vvD~s~ 184 (192)
+.....++++++|+|++.
T Consensus 93 ~~l~~~~~~~~ii~vvd~~~ 112 (179)
T TIGR03598 93 EYLEKRENLKGVVLLMDIRH 112 (179)
T ss_pred HHHHhChhhcEEEEEecCCC
Confidence 455567889999999876
No 13
>COG1159 Era GTPase [General function prediction only]
Probab=99.63 E-value=1.6e-15 Score=126.46 Aligned_cols=88 Identities=26% Similarity=0.212 Sum_probs=67.6
Q ss_pred CeEEEEecCCCcHHHHHHHHhhccCceeecCCCCceeEEEEE---eeCCeEEEEECCCCCCCCChHHHHHHHHHHHhhhc
Q 029512 93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFF---KLGTKLCLVDLPGYGFAYAKEEVKDAWEELVSISY 169 (192)
Q Consensus 93 ~~i~lvG~~n~GKStlin~L~~~~~~~~~~~~~g~T~~~~~~---~~~~~~~lvDtPG~~~~~~~~~~~~~~~~~~~l~~ 169 (192)
.-|+++|+||||||||+|+|.|. +++.+|+.+.|||..... ....++.++||||+..+.. .+-+.+.... .+.
T Consensus 7 GfVaIiGrPNvGKSTLlN~l~G~-KisIvS~k~QTTR~~I~GI~t~~~~QiIfvDTPGih~pk~--~l~~~m~~~a-~~s 82 (298)
T COG1159 7 GFVAIIGRPNVGKSTLLNALVGQ-KISIVSPKPQTTRNRIRGIVTTDNAQIIFVDTPGIHKPKH--ALGELMNKAA-RSA 82 (298)
T ss_pred EEEEEEcCCCCcHHHHHHHHhcC-ceEeecCCcchhhhheeEEEEcCCceEEEEeCCCCCCcch--HHHHHHHHHH-HHH
Confidence 37899999999999999999999 799999999999986432 2478899999999987522 1111111110 345
Q ss_pred cCceeEEEEEEecCC
Q 029512 170 RNFWSCTCFLIYIFY 184 (192)
Q Consensus 170 ~~~~~~v~~vvD~s~ 184 (192)
...+|++++|+|+.+
T Consensus 83 l~dvDlilfvvd~~~ 97 (298)
T COG1159 83 LKDVDLILFVVDADE 97 (298)
T ss_pred hccCcEEEEEEeccc
Confidence 567899999999987
No 14
>KOG0410 consensus Predicted GTP binding protein [General function prediction only]
Probab=99.61 E-value=1.2e-15 Score=128.34 Aligned_cols=170 Identities=19% Similarity=0.170 Sum_probs=105.2
Q ss_pred cccccccCCCCcccchhhhhhcCCCChhhhhhccceeecCCCCCCCCCCChHHHHHHHHHhhhhhHHHHHhcc-cccCCC
Q 029512 10 NAQFRAIQPSPSILSFVEDNLLGRRRPIELRRAGYNIELSAPLDNIPFSTSSERERIEENIFRNKLEFFAAAK-VSSSFP 88 (192)
Q Consensus 10 ~~~~~~~~~~~~~l~~~~~~l~~r~~li~~~~~~~~~~l~~~~e~i~~~~~~~~~~i~~~~~~~~~~~~~~~~-~~~~~~ 88 (192)
.+....+|.-.+.+||..+++ ...+-++.+..... +-.+.|.+-........++.+.-.++.++.....+ .+..+.
T Consensus 98 ~T~earlqvalAempy~~~rl--~r~~~hl~r~~g~~-v~gsges~id~d~~rllr~kea~lrKeL~~vrrkr~~r~gr~ 174 (410)
T KOG0410|consen 98 VTAEARLQVALAEMPYVGGRL--ERELQHLRRQSGGQ-VKGSGESIIDRDIRRLLRIKEAQLRKELQRVRRKRQRRVGRE 174 (410)
T ss_pred hhHHHHHhhhhhcCccccchH--HHHHHHHHhcCCCc-ccCccchHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccc
Confidence 345566778888889988888 43444454433332 33333211111111111222222333344333322 233444
Q ss_pred CCCCCeEEEEecCCCcHHHHHHHHhhccCceeecCCCCceeEEE----EEeeCCeEEEEECCCCCCCCChHHHHHHHHHH
Q 029512 89 APDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTIN----FFKLGTKLCLVDLPGYGFAYAKEEVKDAWEEL 164 (192)
Q Consensus 89 ~~~~~~i~lvG~~n~GKStlin~L~~~~~~~~~~~~~g~T~~~~----~~~~~~~~~lvDtPG~~~~~~~~~~~~~~~~~ 164 (192)
....+.|++|||||+|||||+|+|++.. ....+.-+.|-|+. ..+.|..+.+.||-||....+ -.+..+|++-
T Consensus 175 ~~s~pviavVGYTNaGKsTLikaLT~Aa--l~p~drLFATLDpT~h~a~Lpsg~~vlltDTvGFisdLP-~~LvaAF~AT 251 (410)
T KOG0410|consen 175 GESSPVIAVVGYTNAGKSTLIKALTKAA--LYPNDRLFATLDPTLHSAHLPSGNFVLLTDTVGFISDLP-IQLVAAFQAT 251 (410)
T ss_pred cCCCceEEEEeecCccHHHHHHHHHhhh--cCccchhheeccchhhhccCCCCcEEEEeechhhhhhCc-HHHHHHHHHH
Confidence 5678899999999999999999999653 33445556665553 444688999999999986443 3344444444
Q ss_pred HhhhccCceeEEEEEEecCCceE
Q 029512 165 VSISYRNFWSCTCFLIYIFYTNV 187 (192)
Q Consensus 165 ~~l~~~~~~~~v~~vvD~s~~~~ 187 (192)
|.+...+|++++|+|.|+|++
T Consensus 252 --LeeVaeadlllHvvDiShP~a 272 (410)
T KOG0410|consen 252 --LEEVAEADLLLHVVDISHPNA 272 (410)
T ss_pred --HHHHhhcceEEEEeecCCccH
Confidence 667888999999999999985
No 15
>KOG1191 consensus Mitochondrial GTPase [Translation, ribosomal structure and biogenesis]
Probab=99.61 E-value=1.6e-15 Score=133.19 Aligned_cols=139 Identities=22% Similarity=0.177 Sum_probs=89.3
Q ss_pred CCChhhhhhccceeecCCCCCCCCCCChHH--HHHHHHHhhhhhHHHHHhcccccCCCCCCCCeEEEEecCCCcHHHHHH
Q 029512 33 RRRPIELRRAGYNIELSAPLDNIPFSTSSE--RERIEENIFRNKLEFFAAAKVSSSFPAPDLPEIAFAGRSNVGKSSMLN 110 (192)
Q Consensus 33 r~~li~~~~~~~~~~l~~~~e~i~~~~~~~--~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~lvG~~n~GKStlin 110 (192)
|..++++.+ ++++.++|.++.-....... ...... +.......+......... ..++.|+|+|+||||||||+|
T Consensus 211 r~~lIe~~a-~l~a~idf~e~~~l~~~~t~~~~~~~~~-l~d~v~s~l~~~~~~e~l--q~gl~iaIvGrPNvGKSSLlN 286 (531)
T KOG1191|consen 211 RKILIEALA-GLEARIDFEEERPLEEIETVEIFIESLS-LLDDVLSHLNKADEIERL--QSGLQIAIVGRPNVGKSSLLN 286 (531)
T ss_pred HHHHHHHHh-ccceeechhhcCchhhccchhhhhHHHH-HHHHHHHHHHhhhhHHHh--hcCCeEEEEcCCCCCHHHHHH
Confidence 456677777 79999998765321111111 111111 111112222222222222 245899999999999999999
Q ss_pred HHhhccCceeecCCCCceeEEE---EEeeCCeEEEEECCCCCC-CC---ChHHHHHHHHHHHhhhccCceeEEEEEEec
Q 029512 111 ALTRQWGVVRTSDKPGLTQTIN---FFKLGTKLCLVDLPGYGF-AY---AKEEVKDAWEELVSISYRNFWSCTCFLIYI 182 (192)
Q Consensus 111 ~L~~~~~~~~~~~~~g~T~~~~---~~~~~~~~~lvDtPG~~~-~~---~~~~~~~~~~~~~~l~~~~~~~~v~~vvD~ 182 (192)
+|++. ..+.|++.+|+|||.. +...|.++.|+||+|+.. .. ....+.++ ......+|++++|+|+
T Consensus 287 aL~~~-drsIVSpv~GTTRDaiea~v~~~G~~v~L~DTAGiRe~~~~~iE~~gI~rA------~k~~~~advi~~vvda 358 (531)
T KOG1191|consen 287 ALSRE-DRSIVSPVPGTTRDAIEAQVTVNGVPVRLSDTAGIREESNDGIEALGIERA------RKRIERADVILLVVDA 358 (531)
T ss_pred HHhcC-CceEeCCCCCcchhhheeEeecCCeEEEEEeccccccccCChhHHHhHHHH------HHHHhhcCEEEEEecc
Confidence 99998 7899999999999874 333589999999999987 21 12222333 3334568999999999
No 16
>COG1084 Predicted GTPase [General function prediction only]
Probab=99.61 E-value=3.9e-15 Score=125.51 Aligned_cols=106 Identities=28% Similarity=0.336 Sum_probs=79.5
Q ss_pred HHHHHhcc-cccCCCC--CCCCeEEEEecCCCcHHHHHHHHhhccCceeecCCCCceeEEEEEee---CCeEEEEECCCC
Q 029512 75 LEFFAAAK-VSSSFPA--PDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKL---GTKLCLVDLPGY 148 (192)
Q Consensus 75 ~~~~~~~~-~~~~~~~--~~~~~i~lvG~~n~GKStlin~L~~~~~~~~~~~~~g~T~~~~~~~~---~~~~~lvDtPG~ 148 (192)
+.++...+ ...++|. ++.++|+++|+||||||||+++|++.. ..+.++|+||+..+.++. +..++++||||+
T Consensus 148 L~fL~~~r~~l~~LP~Idp~~pTivVaG~PNVGKSSlv~~lT~Ak--pEvA~YPFTTK~i~vGhfe~~~~R~QvIDTPGl 225 (346)
T COG1084 148 LEFLRKARDHLKKLPAIDPDLPTIVVAGYPNVGKSSLVRKLTTAK--PEVAPYPFTTKGIHVGHFERGYLRIQVIDTPGL 225 (346)
T ss_pred HHHHHHHHHHHhcCCCCCCCCCeEEEecCCCCcHHHHHHHHhcCC--CccCCCCccccceeEeeeecCCceEEEecCCcc
Confidence 44444433 2334443 578999999999999999999999986 789999999999987764 458999999999
Q ss_pred CCCCChHHHHHHHHHHHhhhccCceeEEEEEEecCC
Q 029512 149 GFAYAKEEVKDAWEELVSISYRNFWSCTCFLIYIFY 184 (192)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~l~~~~~~~~v~~vvD~s~ 184 (192)
.+....+-.....+++..|.+.. +.|++++|.|-
T Consensus 226 LDRPl~ErN~IE~qAi~AL~hl~--~~IlF~~D~Se 259 (346)
T COG1084 226 LDRPLEERNEIERQAILALRHLA--GVILFLFDPSE 259 (346)
T ss_pred cCCChHHhcHHHHHHHHHHHHhc--CeEEEEEcCcc
Confidence 88655554444555665554433 77999999874
No 17
>PTZ00258 GTP-binding protein; Provisional
Probab=99.57 E-value=8.8e-15 Score=127.68 Aligned_cols=91 Identities=23% Similarity=0.238 Sum_probs=69.6
Q ss_pred CCCCeEEEEecCCCcHHHHHHHHhhccCceeecCCCCceeEEEEEee--------------------CCeEEEEECCCCC
Q 029512 90 PDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKL--------------------GTKLCLVDLPGYG 149 (192)
Q Consensus 90 ~~~~~i~lvG~~n~GKStlin~L~~~~~~~~~~~~~g~T~~~~~~~~--------------------~~~~~lvDtPG~~ 149 (192)
....+|+|||.||||||||+|+|++.. ..++++||+|++++.... +.++.++||||+.
T Consensus 19 ~~~~kvgIVG~PNvGKSTLfnaLt~~~--~~v~n~pftTi~p~~g~v~~~d~r~~~l~~~~~~~~~~~aqi~lvDtpGLv 96 (390)
T PTZ00258 19 GNNLKMGIVGLPNVGKSTTFNALCKQQ--VPAENFPFCTIDPNTARVNVPDERFDWLCKHFKPKSIVPAQLDITDIAGLV 96 (390)
T ss_pred CCCcEEEEECCCCCChHHHHHHHhcCc--ccccCCCCCcccceEEEEecccchhhHHHHHcCCcccCCCCeEEEECCCcC
Confidence 456799999999999999999999974 689999999998875442 2259999999997
Q ss_pred CCCC-hHHHHHHHHHHHhhhccCceeEEEEEEecCCceE
Q 029512 150 FAYA-KEEVKDAWEELVSISYRNFWSCTCFLIYIFYTNV 187 (192)
Q Consensus 150 ~~~~-~~~~~~~~~~~~~l~~~~~~~~v~~vvD~s~~~~ 187 (192)
.... .+.+.+.+ +...+.+|++++|||++..+.
T Consensus 97 ~ga~~g~gLg~~f-----L~~Ir~aD~il~VVd~f~d~~ 130 (390)
T PTZ00258 97 KGASEGEGLGNAF-----LSHIRAVDGIYHVVRAFEDED 130 (390)
T ss_pred cCCcchhHHHHHH-----HHHHHHCCEEEEEEeCCCCCC
Confidence 6322 23333322 456678999999999975443
No 18
>cd01852 AIG1 AIG1 (avrRpt2-induced gene 1). This represents Arabidoposis protein AIG1 that appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 exhibits RPS2- and avrRpt1-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2. This subfamily also includes IAN-4 protein, which has GTP-binding activity and shares sequence homology with a novel family of putative GTP-binding proteins: the immuno-associated nucleotide (IAN) family. The evolutionary conservation of the IAN family provides a unique example of a plant pathogen response gene conserved in animals. The IAN/IMAP subfamily has been proposed to regulate apoptosis in vertebrates and angiosperm plants, particularly in relation to cancer, diabetes, and infections. The human IAN genes were renamed GIMAP (GTPase of the immunity associated proteins).
Probab=99.54 E-value=5.4e-14 Score=111.81 Aligned_cols=90 Identities=13% Similarity=0.079 Sum_probs=63.2
Q ss_pred eEEEEecCCCcHHHHHHHHhhccCceeecCCCCceeEEEEEe---eCCeEEEEECCCCCCCCC-hHHHHHHHHHHHhhhc
Q 029512 94 EIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFK---LGTKLCLVDLPGYGFAYA-KEEVKDAWEELVSISY 169 (192)
Q Consensus 94 ~i~lvG~~n~GKStlin~L~~~~~~~~~~~~~g~T~~~~~~~---~~~~~~lvDtPG~~~~~~-~~~~~~~~~~~~~l~~ 169 (192)
+|+++|.||+|||||+|+|+|..........+++|++++... .+..+.++||||+.+... .+...+.+.... ...
T Consensus 2 ~i~lvG~~g~GKSsl~N~ilg~~~~~~~~~~~~~T~~~~~~~~~~~~~~i~viDTPG~~d~~~~~~~~~~~i~~~~-~~~ 80 (196)
T cd01852 2 RLVLVGKTGAGKSATGNTILGREVFESKLSASSVTKTCQKESAVWDGRRVNVIDTPGLFDTSVSPEQLSKEIVRCL-SLS 80 (196)
T ss_pred EEEEECCCCCCHHHHHHHhhCCCccccccCCCCcccccceeeEEECCeEEEEEECcCCCCccCChHHHHHHHHHHH-Hhc
Confidence 799999999999999999999843222223567888876543 478899999999987533 333333322222 223
Q ss_pred cCceeEEEEEEecCC
Q 029512 170 RNFWSCTCFLIYIFY 184 (192)
Q Consensus 170 ~~~~~~v~~vvD~s~ 184 (192)
...++++++|+|+.+
T Consensus 81 ~~g~~~illVi~~~~ 95 (196)
T cd01852 81 APGPHAFLLVVPLGR 95 (196)
T ss_pred CCCCEEEEEEEECCC
Confidence 467899999999865
No 19
>cd01900 YchF YchF subfamily. YchF is a member of the Obg family, which includes four other subfamilies of GTPases: Obg, DRG, Ygr210, and NOG1. Obg is an essential gene that is involved in DNA replication in C. crescentus and Streptomyces griseus and is associated with the ribosome. Several members of the family, including YchF, possess the TGS domain related to the RNA-binding proteins. Experimental data and genomic analysis suggest that YchF may be part of a nucleoprotein complex and may function as a GTP-dependent translational factor.
Probab=99.54 E-value=1.2e-14 Score=121.71 Aligned_cols=85 Identities=24% Similarity=0.280 Sum_probs=64.9
Q ss_pred EEEEecCCCcHHHHHHHHhhccCceeecCCCCceeEEEEEee---C-----------------CeEEEEECCCCCCCCC-
Q 029512 95 IAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKL---G-----------------TKLCLVDLPGYGFAYA- 153 (192)
Q Consensus 95 i~lvG~~n~GKStlin~L~~~~~~~~~~~~~g~T~~~~~~~~---~-----------------~~~~lvDtPG~~~~~~- 153 (192)
|++||.||||||||+|+|++.. ..++++||+|++++.... + ..+.++|+||+.....
T Consensus 1 igivG~PN~GKSTLfn~Lt~~~--~~~~n~pftTi~p~~g~v~v~d~r~~~l~~~~~~~k~~~~~i~lvD~pGl~~~a~~ 78 (274)
T cd01900 1 IGIVGLPNVGKSTLFNALTKAG--AEAANYPFCTIEPNVGIVPVPDERLDKLAEIVKPKKIVPATIEFVDIAGLVKGASK 78 (274)
T ss_pred CeEeCCCCCcHHHHHHHHhCCC--CccccccccchhceeeeEEeccchhhhHHHHhCCceeeeeEEEEEECCCcCCCCch
Confidence 5899999999999999999984 488999999998764331 1 1499999999976322
Q ss_pred hHHHHHHHHHHHhhhccCceeEEEEEEecCCce
Q 029512 154 KEEVKDAWEELVSISYRNFWSCTCFLIYIFYTN 186 (192)
Q Consensus 154 ~~~~~~~~~~~~~l~~~~~~~~v~~vvD~s~~~ 186 (192)
.+.+...+ +.+.+.+|++++|||++..+
T Consensus 79 ~~glg~~f-----L~~i~~~D~li~VV~~f~d~ 106 (274)
T cd01900 79 GEGLGNKF-----LSHIREVDAIAHVVRCFEDD 106 (274)
T ss_pred hhHHHHHH-----HHHHHhCCEEEEEEeCcCCC
Confidence 33343333 55667899999999997543
No 20
>TIGR00436 era GTP-binding protein Era. Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein.
Probab=99.53 E-value=5.5e-14 Score=117.32 Aligned_cols=88 Identities=26% Similarity=0.209 Sum_probs=64.4
Q ss_pred eEEEEecCCCcHHHHHHHHhhccCceeecCCCCceeEEEEE---eeCCeEEEEECCCCCCCCChHHHHHHH-HHHHhhhc
Q 029512 94 EIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFF---KLGTKLCLVDLPGYGFAYAKEEVKDAW-EELVSISY 169 (192)
Q Consensus 94 ~i~lvG~~n~GKStlin~L~~~~~~~~~~~~~g~T~~~~~~---~~~~~~~lvDtPG~~~~~~~~~~~~~~-~~~~~l~~ 169 (192)
.|+++|+||||||||+|+|++. ..+.+++.+++|++.... ..+.++.++||||+..... .+...+ ... ...
T Consensus 2 ~V~liG~pnvGKSTLln~L~~~-~~~~vs~~~~TTr~~i~~i~~~~~~qii~vDTPG~~~~~~--~l~~~~~~~~--~~~ 76 (270)
T TIGR00436 2 FVAILGRPNVGKSTLLNQLHGQ-KISITSPKAQTTRNRISGIHTTGASQIIFIDTPGFHEKKH--SLNRLMMKEA--RSA 76 (270)
T ss_pred EEEEECCCCCCHHHHHHHHhCC-cEeecCCCCCcccCcEEEEEEcCCcEEEEEECcCCCCCcc--hHHHHHHHHH--HHH
Confidence 6899999999999999999998 678889999999975422 2356799999999876421 111111 111 233
Q ss_pred cCceeEEEEEEecCCce
Q 029512 170 RNFWSCTCFLIYIFYTN 186 (192)
Q Consensus 170 ~~~~~~v~~vvD~s~~~ 186 (192)
...+|++++|+|++.+.
T Consensus 77 l~~aDvvl~VvD~~~~~ 93 (270)
T TIGR00436 77 IGGVDLILFVVDSDQWN 93 (270)
T ss_pred HhhCCEEEEEEECCCCC
Confidence 45789999999998653
No 21
>COG1160 Predicted GTPases [General function prediction only]
Probab=99.51 E-value=1.7e-14 Score=126.28 Aligned_cols=95 Identities=27% Similarity=0.248 Sum_probs=72.8
Q ss_pred CCCeEEEEecCCCcHHHHHHHHhhccCceeecCCCCceeEEE---EEeeCCeEEEEECCCCCCCCChHHHHHHHHHHHhh
Q 029512 91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTIN---FFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVSI 167 (192)
Q Consensus 91 ~~~~i~lvG~~n~GKStlin~L~~~~~~~~~~~~~g~T~~~~---~~~~~~~~~lvDtPG~~~~~~~~~~~~~~~~~~~l 167 (192)
...+++++|.||+|||||+|+|+|. +.+.+++.+|+|+|.- +.+.+..+.++||+|+.....-.+..+.++....+
T Consensus 177 ~~ikiaiiGrPNvGKSsLiN~ilge-eR~Iv~~~aGTTRD~I~~~~e~~~~~~~liDTAGiRrk~ki~e~~E~~Sv~rt~ 255 (444)
T COG1160 177 DPIKIAIIGRPNVGKSSLINAILGE-ERVIVSDIAGTTRDSIDIEFERDGRKYVLIDTAGIRRKGKITESVEKYSVARTL 255 (444)
T ss_pred CceEEEEEeCCCCCchHHHHHhccC-ceEEecCCCCccccceeeeEEECCeEEEEEECCCCCcccccccceEEEeehhhH
Confidence 4589999999999999999999998 6799999999999874 44568999999999997633222211222222225
Q ss_pred hccCceeEEEEEEecCCce
Q 029512 168 SYRNFWSCTCFLIYIFYTN 186 (192)
Q Consensus 168 ~~~~~~~~v~~vvD~s~~~ 186 (192)
.....++.+++|+|++.+.
T Consensus 256 ~aI~~a~vvllviDa~~~~ 274 (444)
T COG1160 256 KAIERADVVLLVIDATEGI 274 (444)
T ss_pred hHHhhcCEEEEEEECCCCc
Confidence 5566789999999998763
No 22
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=99.51 E-value=4.6e-14 Score=108.47 Aligned_cols=57 Identities=33% Similarity=0.588 Sum_probs=51.6
Q ss_pred CCCeEEEEecCCCcHHHHHHHHhhccCceeecCCCCceeEEEEEeeCCeEEEEECCCC
Q 029512 91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGY 148 (192)
Q Consensus 91 ~~~~i~lvG~~n~GKStlin~L~~~~~~~~~~~~~g~T~~~~~~~~~~~~~lvDtPG~ 148 (192)
...+|+++|.||||||||+|+|.+. ....++..+|+|++.+++..+..+.++||||+
T Consensus 101 ~~~~v~~~G~~nvGKStliN~l~~~-~~~~~~~~~g~T~~~~~~~~~~~~~liDtPGi 157 (157)
T cd01858 101 KQISVGFIGYPNVGKSSIINTLRSK-KVCKVAPIPGETKVWQYITLMKRIYLIDCPGV 157 (157)
T ss_pred cceEEEEEeCCCCChHHHHHHHhcC-CceeeCCCCCeeEeEEEEEcCCCEEEEECcCC
Confidence 3468899999999999999999998 56889999999999998888888999999996
No 23
>PRK09601 GTP-binding protein YchF; Reviewed
Probab=99.51 E-value=5e-14 Score=121.82 Aligned_cols=86 Identities=21% Similarity=0.238 Sum_probs=66.6
Q ss_pred CeEEEEecCCCcHHHHHHHHhhccCceeecCCCCceeEEEEEe--e-C-----------------CeEEEEECCCCCCCC
Q 029512 93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFK--L-G-----------------TKLCLVDLPGYGFAY 152 (192)
Q Consensus 93 ~~i~lvG~~n~GKStlin~L~~~~~~~~~~~~~g~T~~~~~~~--~-~-----------------~~~~lvDtPG~~~~~ 152 (192)
.+|+|+|.||||||||+|+|++.. +.++++||+|++++... . + ..+.++|+||+....
T Consensus 3 ~~vgIVG~PNvGKSTLfnaLt~~~--~~v~nypftTi~p~~G~~~v~d~r~~~l~~~~~p~~~~~a~i~lvD~pGL~~~a 80 (364)
T PRK09601 3 LKCGIVGLPNVGKSTLFNALTKAG--AEAANYPFCTIEPNVGVVPVPDPRLDKLAEIVKPKKIVPATIEFVDIAGLVKGA 80 (364)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCC--CeecccccccccceEEEEEeccccchhhHHhcCCccccCceEEEEECCCCCCCC
Confidence 589999999999999999999984 78899999999886432 1 1 258999999997632
Q ss_pred -ChHHHHHHHHHHHhhhccCceeEEEEEEecCCc
Q 029512 153 -AKEEVKDAWEELVSISYRNFWSCTCFLIYIFYT 185 (192)
Q Consensus 153 -~~~~~~~~~~~~~~l~~~~~~~~v~~vvD~s~~ 185 (192)
..+.+.+.+ +.+.+.+|++++|||++..
T Consensus 81 ~~g~glg~~f-----L~~i~~aD~li~VVd~f~d 109 (364)
T PRK09601 81 SKGEGLGNQF-----LANIREVDAIVHVVRCFED 109 (364)
T ss_pred ChHHHHHHHH-----HHHHHhCCEEEEEEeCCcc
Confidence 223333333 5567789999999999743
No 24
>COG1161 Predicted GTPases [General function prediction only]
Probab=99.51 E-value=1.3e-13 Score=118.04 Aligned_cols=139 Identities=22% Similarity=0.262 Sum_probs=87.1
Q ss_pred cccccCCCCcccchhhhhhcCCCChhhhhhccceeecC------C-CCC-CC-CC-CChH---HHHHHHHHhhhhhHHHH
Q 029512 12 QFRAIQPSPSILSFVEDNLLGRRRPIELRRAGYNIELS------A-PLD-NI-PF-STSS---ERERIEENIFRNKLEFF 78 (192)
Q Consensus 12 ~~~~~~~~~~~l~~~~~~l~~r~~li~~~~~~~~~~l~------~-~~e-~i-~~-~~~~---~~~~i~~~~~~~~~~~~ 78 (192)
-.++-.|.+++++.+.+...++..++.+++.++--... . ..+ .. +. .... ....+...+..-.....
T Consensus 41 vvDar~P~~s~~~~l~~~v~~k~~i~vlNK~DL~~~~~~~~W~~~~~~~~~~~~~~v~~~~~~~~~~i~~~~~~~~~~~i 120 (322)
T COG1161 41 VVDARDPLGTRNPELERIVKEKPKLLVLNKADLAPKEVTKKWKKYFKKEEGIKPIFVSAKSRQGGKKIRKALEKLSEEKI 120 (322)
T ss_pred EEeccccccccCccHHHHHccCCcEEEEehhhcCCHHHHHHHHHHHHhcCCCccEEEEeecccCccchHHHHHHHHHHHH
Confidence 35677899999999999999988877777754321000 0 000 00 00 0000 00011100000000111
Q ss_pred HhcccccCCCCCCCCeEEEEecCCCcHHHHHHHHhhccCceeecCCCCceeEEEEEeeCCeEEEEECCCCCCCCC
Q 029512 79 AAAKVSSSFPAPDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYA 153 (192)
Q Consensus 79 ~~~~~~~~~~~~~~~~i~lvG~~n~GKStlin~L~~~~~~~~~~~~~g~T~~~~~~~~~~~~~lvDtPG~~~~~~ 153 (192)
+. ...........+++++|.||||||||||+|++. ..+.+++.||+|+..++...+..+.|+||||+..+..
T Consensus 121 ~~--~~~~~~~~~~~~v~vvG~PNVGKSslIN~L~~k-~~~~~s~~PG~Tk~~q~i~~~~~i~LlDtPGii~~~~ 192 (322)
T COG1161 121 KR--LKKKGLLKRKIRVGVVGYPNVGKSTLINRLLGK-KVAKTSNRPGTTKGIQWIKLDDGIYLLDTPGIIPPKF 192 (322)
T ss_pred HH--HhhcCCCccceEEEEEcCCCCcHHHHHHHHhcc-cceeeCCCCceecceEEEEcCCCeEEecCCCcCCCCc
Confidence 11 111111223468999999999999999999998 6799999999999999999999999999999987543
No 25
>cd04178 Nucleostemin_like Nucleostemin-like. Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the
Probab=99.49 E-value=7.4e-14 Score=109.51 Aligned_cols=57 Identities=33% Similarity=0.545 Sum_probs=52.4
Q ss_pred CCCeEEEEecCCCcHHHHHHHHhhccCceeecCCCCceeEEEEEeeCCeEEEEECCCC
Q 029512 91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGY 148 (192)
Q Consensus 91 ~~~~i~lvG~~n~GKStlin~L~~~~~~~~~~~~~g~T~~~~~~~~~~~~~lvDtPG~ 148 (192)
...+++++|.||+|||||||+|++. ..+.+++.||+|++.+++..+..+.++||||+
T Consensus 116 ~~~~~~~vG~pnvGKSslin~l~~~-~~~~~~~~pg~T~~~~~~~~~~~~~l~DtPGi 172 (172)
T cd04178 116 TSITVGVVGFPNVGKSSLINSLKRS-RACNVGATPGVTKSMQEVHLDKKVKLLDSPGI 172 (172)
T ss_pred cCcEEEEEcCCCCCHHHHHHHHhCc-ccceecCCCCeEcceEEEEeCCCEEEEECcCC
Confidence 4579999999999999999999998 56789999999999999888889999999996
No 26
>PRK12297 obgE GTPase CgtA; Reviewed
Probab=99.48 E-value=1.9e-13 Score=120.70 Aligned_cols=85 Identities=16% Similarity=0.194 Sum_probs=66.3
Q ss_pred eEEEEecCCCcHHHHHHHHhhccCceeecCCCCceeEEEEEee----CCeEEEEECCCCCCC-CChHHHHHHHHHHHhhh
Q 029512 94 EIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKL----GTKLCLVDLPGYGFA-YAKEEVKDAWEELVSIS 168 (192)
Q Consensus 94 ~i~lvG~~n~GKStlin~L~~~~~~~~~~~~~g~T~~~~~~~~----~~~~~lvDtPG~~~~-~~~~~~~~~~~~~~~l~ 168 (192)
.|+|+|.||||||||||+|++.. ..+++++++|..++.... +..+.++||||+... .....+...| +.
T Consensus 160 dVglVG~pNaGKSTLLn~Lt~ak--~kIa~ypfTTl~PnlG~v~~~~~~~~~laD~PGliega~~~~gLg~~f-----Lr 232 (424)
T PRK12297 160 DVGLVGFPNVGKSTLLSVVSNAK--PKIANYHFTTLVPNLGVVETDDGRSFVMADIPGLIEGASEGVGLGHQF-----LR 232 (424)
T ss_pred cEEEEcCCCCCHHHHHHHHHcCC--CccccCCcceeceEEEEEEEeCCceEEEEECCCCcccccccchHHHHH-----HH
Confidence 89999999999999999999974 557889999999886543 578999999999752 2222232222 45
Q ss_pred ccCceeEEEEEEecCCc
Q 029512 169 YRNFWSCTCFLIYIFYT 185 (192)
Q Consensus 169 ~~~~~~~v~~vvD~s~~ 185 (192)
+...++++++|+|++..
T Consensus 233 hier~~llI~VID~s~~ 249 (424)
T PRK12297 233 HIERTRVIVHVIDMSGS 249 (424)
T ss_pred HHhhCCEEEEEEeCCcc
Confidence 56678999999999754
No 27
>cd01878 HflX HflX subfamily. A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.
Probab=99.48 E-value=4.4e-13 Score=106.64 Aligned_cols=92 Identities=20% Similarity=0.194 Sum_probs=63.2
Q ss_pred CCCCeEEEEecCCCcHHHHHHHHhhccCceeecCCCCceeEEEEEe---eC-CeEEEEECCCCCCCCChHHHHHHHHHHH
Q 029512 90 PDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFK---LG-TKLCLVDLPGYGFAYAKEEVKDAWEELV 165 (192)
Q Consensus 90 ~~~~~i~lvG~~n~GKStlin~L~~~~~~~~~~~~~g~T~~~~~~~---~~-~~~~lvDtPG~~~~~~~~~~~~~~~~~~ 165 (192)
.+.++|+++|++|||||||+|+|++.. ..+.+.++.|.+..... .+ ..+.+|||||+....... ....+...
T Consensus 39 ~~~~~I~iiG~~g~GKStLl~~l~~~~--~~~~~~~~~t~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~-~~~~~~~~- 114 (204)
T cd01878 39 SGIPTVALVGYTNAGKSTLFNALTGAD--VYAEDQLFATLDPTTRRLRLPDGREVLLTDTVGFIRDLPHQ-LVEAFRST- 114 (204)
T ss_pred cCCCeEEEECCCCCCHHHHHHHHhcch--hccCCccceeccceeEEEEecCCceEEEeCCCccccCCCHH-HHHHHHHH-
Confidence 456899999999999999999999973 34445556665543222 23 389999999986543332 22223322
Q ss_pred hhhccCceeEEEEEEecCCce
Q 029512 166 SISYRNFWSCTCFLIYIFYTN 186 (192)
Q Consensus 166 ~l~~~~~~~~v~~vvD~s~~~ 186 (192)
+.....+|++++|+|++++.
T Consensus 115 -~~~~~~~d~ii~v~D~~~~~ 134 (204)
T cd01878 115 -LEEVAEADLLLHVVDASDPD 134 (204)
T ss_pred -HHHHhcCCeEEEEEECCCCC
Confidence 23345789999999998764
No 28
>PRK12298 obgE GTPase CgtA; Reviewed
Probab=99.47 E-value=2e-13 Score=119.64 Aligned_cols=83 Identities=19% Similarity=0.217 Sum_probs=64.4
Q ss_pred eEEEEecCCCcHHHHHHHHhhccCceeecCCCCceeEEEEEee----CCeEEEEECCCCCCCCCh-HHHHHHHHHHHhhh
Q 029512 94 EIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKL----GTKLCLVDLPGYGFAYAK-EEVKDAWEELVSIS 168 (192)
Q Consensus 94 ~i~lvG~~n~GKStlin~L~~~~~~~~~~~~~g~T~~~~~~~~----~~~~~lvDtPG~~~~~~~-~~~~~~~~~~~~l~ 168 (192)
.|+|||.||||||||+|+|++.. ..++++|++|+.+..... +..+.++||||+...... ..+... + +.
T Consensus 161 dValVG~PNaGKSTLln~Lt~~k--~~vs~~p~TT~~p~~Giv~~~~~~~i~~vDtPGi~~~a~~~~~Lg~~---~--l~ 233 (390)
T PRK12298 161 DVGLLGLPNAGKSTFIRAVSAAK--PKVADYPFTTLVPNLGVVRVDDERSFVVADIPGLIEGASEGAGLGIR---F--LK 233 (390)
T ss_pred cEEEEcCCCCCHHHHHHHHhCCc--ccccCCCCCccCcEEEEEEeCCCcEEEEEeCCCccccccchhhHHHH---H--HH
Confidence 89999999999999999999974 588999999999876543 346999999999763221 222222 2 34
Q ss_pred ccCceeEEEEEEecC
Q 029512 169 YRNFWSCTCFLIYIF 183 (192)
Q Consensus 169 ~~~~~~~v~~vvD~s 183 (192)
+...++++++|+|++
T Consensus 234 ~i~radvlL~VVD~s 248 (390)
T PRK12298 234 HLERCRVLLHLIDIA 248 (390)
T ss_pred HHHhCCEEEEEeccC
Confidence 566789999999987
No 29
>cd01876 YihA_EngB The YihA (EngB) subfamily. This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.
Probab=99.47 E-value=5.6e-13 Score=100.88 Aligned_cols=92 Identities=51% Similarity=0.767 Sum_probs=69.5
Q ss_pred eEEEEecCCCcHHHHHHHHhhccCceeecCCCCceeEEEEEeeCCeEEEEECCCCCCCCChHHHHHHHHHHHh--hhccC
Q 029512 94 EIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVS--ISYRN 171 (192)
Q Consensus 94 ~i~lvG~~n~GKStlin~L~~~~~~~~~~~~~g~T~~~~~~~~~~~~~lvDtPG~~~~~~~~~~~~~~~~~~~--l~~~~ 171 (192)
.|+++|.+|+|||||+|+|++.......++.+++|.....+.....+.++||||++...........+..... +....
T Consensus 1 ~i~l~G~~g~GKTtL~~~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (170)
T cd01876 1 EIAFAGRSNVGKSSLINALTNRKKLARTSKTPGKTQLINFFNVNDKFRLVDLPGYGYAKVSKEVKEKWGKLIEEYLENRE 80 (170)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCceeeecCCCCcceeEEEEEccCeEEEecCCCccccccCHHHHHHHHHHHHHHHHhCh
Confidence 3789999999999999999954345677788888888877777779999999999875433333334444433 45567
Q ss_pred ceeEEEEEEecCCc
Q 029512 172 FWSCTCFLIYIFYT 185 (192)
Q Consensus 172 ~~~~v~~vvD~s~~ 185 (192)
+++.+++++|...+
T Consensus 81 ~~~~~~~v~d~~~~ 94 (170)
T cd01876 81 NLKGVVLLIDSRHG 94 (170)
T ss_pred hhhEEEEEEEcCcC
Confidence 88999999998754
No 30
>PRK12299 obgE GTPase CgtA; Reviewed
Probab=99.47 E-value=2.1e-13 Score=117.30 Aligned_cols=88 Identities=18% Similarity=0.184 Sum_probs=67.6
Q ss_pred CCeEEEEecCCCcHHHHHHHHhhccCceeecCCCCceeEEEEEe----eCCeEEEEECCCCCCCC-ChHHHHHHHHHHHh
Q 029512 92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFK----LGTKLCLVDLPGYGFAY-AKEEVKDAWEELVS 166 (192)
Q Consensus 92 ~~~i~lvG~~n~GKStlin~L~~~~~~~~~~~~~g~T~~~~~~~----~~~~~~lvDtPG~~~~~-~~~~~~~~~~~~~~ 166 (192)
...|+|||.||||||||+|+|++.. ..+++++++|..++... .+..+.++||||+.... ....+...|
T Consensus 158 ~adVglVG~PNaGKSTLln~ls~a~--~~va~ypfTT~~p~~G~v~~~~~~~~~i~D~PGli~ga~~~~gLg~~f----- 230 (335)
T PRK12299 158 LADVGLVGLPNAGKSTLISAVSAAK--PKIADYPFTTLHPNLGVVRVDDYKSFVIADIPGLIEGASEGAGLGHRF----- 230 (335)
T ss_pred cCCEEEEcCCCCCHHHHHHHHHcCC--CccCCCCCceeCceEEEEEeCCCcEEEEEeCCCccCCCCccccHHHHH-----
Confidence 3588999999999999999999874 56889999999987543 24679999999997632 222333333
Q ss_pred hhccCceeEEEEEEecCCce
Q 029512 167 ISYRNFWSCTCFLIYIFYTN 186 (192)
Q Consensus 167 l~~~~~~~~v~~vvD~s~~~ 186 (192)
+.+.+.++++++|+|+++++
T Consensus 231 lrhie~a~vlI~ViD~s~~~ 250 (335)
T PRK12299 231 LKHIERTRLLLHLVDIEAVD 250 (335)
T ss_pred HHHhhhcCEEEEEEcCCCCC
Confidence 44566789999999998754
No 31
>COG0012 Predicted GTPase, probable translation factor [Translation, ribosomal structure and biogenesis]
Probab=99.47 E-value=7.2e-14 Score=119.95 Aligned_cols=92 Identities=23% Similarity=0.203 Sum_probs=77.1
Q ss_pred CCeEEEEecCCCcHHHHHHHHhhccCceeecCCCCceeEEEEEee---------------------CCeEEEEECCCCCC
Q 029512 92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKL---------------------GTKLCLVDLPGYGF 150 (192)
Q Consensus 92 ~~~i~lvG~~n~GKStlin~L~~~~~~~~~~~~~g~T~~~~~~~~---------------------~~~~~lvDtPG~~~ 150 (192)
..+++|||.||||||||+|+|+... +..+++|+||.+++.... ...+.++|.+|+..
T Consensus 2 ~l~~GIVGlPNVGKSTlFnAlT~~~--a~~aNYPF~TIePN~Giv~v~d~rl~~L~~~~~c~~k~~~~~ve~vDIAGLV~ 79 (372)
T COG0012 2 SLKIGIVGLPNVGKSTLFNALTKAG--AEIANYPFCTIEPNVGVVYVPDCRLDELAEIVKCPPKIRPAPVEFVDIAGLVK 79 (372)
T ss_pred CceeEEecCCCCcHHHHHHHHHcCC--ccccCCCcccccCCeeEEecCchHHHHHHHhcCCCCcEEeeeeEEEEecccCC
Confidence 4689999999999999999999984 888999999999874321 13689999999976
Q ss_pred -CCChHHHHHHHHHHHhhhccCceeEEEEEEecCCceEEEE
Q 029512 151 -AYAKEEVKDAWEELVSISYRNFWSCTCFLIYIFYTNVIIL 190 (192)
Q Consensus 151 -~~~~~~~~~~~~~~~~l~~~~~~~~v~~vvD~s~~~~~~~ 190 (192)
+...+++.+.| |.+.+.+|.+++||||+..+.+.+
T Consensus 80 GAs~GeGLGNkF-----L~~IRevdaI~hVVr~f~d~di~h 115 (372)
T COG0012 80 GASKGEGLGNKF-----LDNIREVDAIIHVVRCFGDTDIEH 115 (372)
T ss_pred CcccCCCcchHH-----HHhhhhcCeEEEEEEecCCCcccC
Confidence 66677888887 888899999999999997776544
No 32
>PRK04213 GTP-binding protein; Provisional
Probab=99.45 E-value=7.3e-13 Score=105.04 Aligned_cols=90 Identities=34% Similarity=0.576 Sum_probs=64.2
Q ss_pred CCCeEEEEecCCCcHHHHHHHHhhccCceeecCCCCceeEEEEEeeCCeEEEEECCCCCCCCC-----hHHHHHHHHHHH
Q 029512 91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYA-----KEEVKDAWEELV 165 (192)
Q Consensus 91 ~~~~i~lvG~~n~GKStlin~L~~~~~~~~~~~~~g~T~~~~~~~~~~~~~lvDtPG~~~~~~-----~~~~~~~~~~~~ 165 (192)
..++|+++|.+|||||||+|+|++.. ..++..+|+|++......+ .+.+|||||++.... .+.....+..+.
T Consensus 8 ~~~~i~i~G~~~~GKSsLin~l~~~~--~~~~~~~~~t~~~~~~~~~-~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~ 84 (201)
T PRK04213 8 RKPEIVFVGRSNVGKSTLVRELTGKK--VRVGKRPGVTRKPNHYDWG-DFILTDLPGFGFMSGVPKEVQEKIKDEIVRYI 84 (201)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC--CccCCCCceeeCceEEeec-ceEEEeCCccccccccCHHHHHHHHHHHHHHH
Confidence 45799999999999999999999873 4567788999887655545 799999999865221 222222222221
Q ss_pred hhhccCceeEEEEEEecCC
Q 029512 166 SISYRNFWSCTCFLIYIFY 184 (192)
Q Consensus 166 ~l~~~~~~~~v~~vvD~s~ 184 (192)
......++++++|+|++.
T Consensus 85 -~~~~~~~~~vi~v~d~~~ 102 (201)
T PRK04213 85 -EDNADRILAAVLVVDGKS 102 (201)
T ss_pred -HhhhhhheEEEEEEeCcc
Confidence 124466789999999864
No 33
>cd01853 Toc34_like Toc34-like (Translocon at the Outer-envelope membrane of Chloroplasts). This family contains several Toc proteins, including Toc34, Toc33, Toc120, Toc159, Toc86, Toc125, and Toc90. The Toc complex at the outer envelope membrane of chloroplasts is a molecular machine of ~500 kDa that contains a single Toc159 protein, four Toc75 molecules, and four or five copies of Toc34. Toc64 and Toc12 are associated with the translocon, but do not appear to be part of the core complex. The Toc translocon initiates the import of nuclear-encoded preproteins from the cytosol into the organelle. Toc34 and Toc159 are both GTPases, while Toc75 is a beta-barrel integral membrane protein. Toc159 is equally distributed between a soluble cytoplasmic form and a membrane-inserted form, suggesting that assembly of the Toc complex is dynamic. Toc34 and Toc75 act sequentially to mediate docking and insertion of Toc159 resulting in assembly of the functional translocon.
Probab=99.45 E-value=9.8e-13 Score=108.88 Aligned_cols=91 Identities=19% Similarity=0.153 Sum_probs=62.6
Q ss_pred CCCeEEEEecCCCcHHHHHHHHhhccCceeecCCCCceeEEEEEe---eCCeEEEEECCCCCCCCC-hHHHHHHHHHHHh
Q 029512 91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFK---LGTKLCLVDLPGYGFAYA-KEEVKDAWEELVS 166 (192)
Q Consensus 91 ~~~~i~lvG~~n~GKStlin~L~~~~~~~~~~~~~g~T~~~~~~~---~~~~~~lvDtPG~~~~~~-~~~~~~~~~~~~~ 166 (192)
...+|+++|.+|+|||||+|+|+|. ....++...++|+....+. .+..+.+|||||+.+... .......+..+..
T Consensus 30 ~~~~IllvG~tGvGKSSliNaLlg~-~~~~v~~~~~~T~~~~~~~~~~~g~~i~vIDTPGl~~~~~~~~~~~~~~~~I~~ 108 (249)
T cd01853 30 FSLTILVLGKTGVGKSSTINSIFGE-RKAATSAFQSETLRVREVSGTVDGFKLNIIDTPGLLESVMDQRVNRKILSSIKR 108 (249)
T ss_pred CCeEEEEECCCCCcHHHHHHHHhCC-CCcccCCCCCceEEEEEEEEEECCeEEEEEECCCcCcchhhHHHHHHHHHHHHH
Confidence 4579999999999999999999998 5566777777887776544 367899999999987532 1112222333332
Q ss_pred hhccCceeEEEEEEec
Q 029512 167 ISYRNFWSCTCFLIYI 182 (192)
Q Consensus 167 l~~~~~~~~v~~vvD~ 182 (192)
+......+.++++...
T Consensus 109 ~l~~~~idvIL~V~rl 124 (249)
T cd01853 109 YLKKKTPDVVLYVDRL 124 (249)
T ss_pred HHhccCCCEEEEEEcC
Confidence 2233456777777543
No 34
>COG0370 FeoB Fe2+ transport system protein B [Inorganic ion transport and metabolism]
Probab=99.45 E-value=5.1e-13 Score=121.69 Aligned_cols=87 Identities=26% Similarity=0.329 Sum_probs=67.6
Q ss_pred CCeEEEEecCCCcHHHHHHHHhhccCceeecCCCCceeEEEEEe---eCCeEEEEECCCCCC--CCChHHHHHHHHHHHh
Q 029512 92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFK---LGTKLCLVDLPGYGF--AYAKEEVKDAWEELVS 166 (192)
Q Consensus 92 ~~~i~lvG~~n~GKStlin~L~~~~~~~~~~~~~g~T~~~~~~~---~~~~~~lvDtPG~~~--~~~~~~~~~~~~~~~~ 166 (192)
..+|+++|+||||||||+|+|+|.. +.+++.||+|.+..... .+..+.++|.||..+ +.+.|+ +.-.+++
T Consensus 3 ~~~valvGNPNvGKTtlFN~LTG~~--q~VgNwpGvTVEkkeg~~~~~~~~i~ivDLPG~YSL~~~S~DE--~Var~~l- 77 (653)
T COG0370 3 KLTVALVGNPNVGKTTLFNALTGAN--QKVGNWPGVTVEKKEGKLKYKGHEIEIVDLPGTYSLTAYSEDE--KVARDFL- 77 (653)
T ss_pred cceEEEecCCCccHHHHHHHHhccC--ceecCCCCeeEEEEEEEEEecCceEEEEeCCCcCCCCCCCchH--HHHHHHH-
Confidence 3479999999999999999999986 89999999999987554 477899999999876 333332 2222332
Q ss_pred hhccCceeEEEEEEecCCc
Q 029512 167 ISYRNFWSCTCFLIYIFYT 185 (192)
Q Consensus 167 l~~~~~~~~v~~vvD~s~~ 185 (192)
.....|+++.|+|++.-
T Consensus 78 --l~~~~D~ivnVvDAtnL 94 (653)
T COG0370 78 --LEGKPDLIVNVVDATNL 94 (653)
T ss_pred --hcCCCCEEEEEcccchH
Confidence 24667999999999754
No 35
>KOG1424 consensus Predicted GTP-binding protein MMR1 [General function prediction only]
Probab=99.43 E-value=1.3e-13 Score=121.78 Aligned_cols=60 Identities=38% Similarity=0.599 Sum_probs=56.3
Q ss_pred CCeEEEEecCCCcHHHHHHHHhhccCceeecCCCCceeEEEEEeeCCeEEEEECCCCCCCC
Q 029512 92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAY 152 (192)
Q Consensus 92 ~~~i~lvG~~n~GKStlin~L~~~~~~~~~~~~~g~T~~~~~~~~~~~~~lvDtPG~~~~~ 152 (192)
..+|++||+|||||||+||+|.|. +...|+.+||.|++.|...+...+.|+||||+.++.
T Consensus 314 ~vtVG~VGYPNVGKSSTINaLvG~-KkVsVS~TPGkTKHFQTi~ls~~v~LCDCPGLVfPS 373 (562)
T KOG1424|consen 314 VVTVGFVGYPNVGKSSTINALVGR-KKVSVSSTPGKTKHFQTIFLSPSVCLCDCPGLVFPS 373 (562)
T ss_pred eeEEEeecCCCCchhHHHHHHhcC-ceeeeecCCCCcceeEEEEcCCCceecCCCCccccC
Confidence 579999999999999999999999 678999999999999999999999999999998753
No 36
>cd01898 Obg Obg subfamily. The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain.
Probab=99.43 E-value=3.1e-13 Score=103.64 Aligned_cols=85 Identities=18% Similarity=0.187 Sum_probs=60.1
Q ss_pred eEEEEecCCCcHHHHHHHHhhccCceeecCCCCceeEEEEEe---eCC-eEEEEECCCCCCCCCh-HHHHHHHHHHHhhh
Q 029512 94 EIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFK---LGT-KLCLVDLPGYGFAYAK-EEVKDAWEELVSIS 168 (192)
Q Consensus 94 ~i~lvG~~n~GKStlin~L~~~~~~~~~~~~~g~T~~~~~~~---~~~-~~~lvDtPG~~~~~~~-~~~~~~~~~~~~l~ 168 (192)
.|+++|.+|||||||+|+|++.. ..++..+++|+++.... .+. .+.++||||+...... ..... .+ +.
T Consensus 2 ~v~ivG~~~~GKStl~~~l~~~~--~~v~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~---~~--~~ 74 (170)
T cd01898 2 DVGLVGLPNAGKSTLLSAISNAK--PKIADYPFTTLVPNLGVVRVDDGRSFVVADIPGLIEGASEGKGLGH---RF--LR 74 (170)
T ss_pred CeEEECCCCCCHHHHHHHHhcCC--ccccCCCccccCCcceEEEcCCCCeEEEEecCcccCcccccCCchH---HH--HH
Confidence 58999999999999999999863 46777788887754322 244 8999999998542111 11111 12 22
Q ss_pred ccCceeEEEEEEecCCc
Q 029512 169 YRNFWSCTCFLIYIFYT 185 (192)
Q Consensus 169 ~~~~~~~v~~vvD~s~~ 185 (192)
..+.+|++++|+|++++
T Consensus 75 ~~~~~d~vi~v~D~~~~ 91 (170)
T cd01898 75 HIERTRLLLHVIDLSGD 91 (170)
T ss_pred HHHhCCEEEEEEecCCC
Confidence 33468999999999887
No 37
>PRK12296 obgE GTPase CgtA; Reviewed
Probab=99.43 E-value=4.8e-13 Score=120.02 Aligned_cols=86 Identities=17% Similarity=0.208 Sum_probs=65.7
Q ss_pred CCeEEEEecCCCcHHHHHHHHhhccCceeecCCCCceeEEEEEee---CCeEEEEECCCCCCCCC-hHHHHHHHHHHHhh
Q 029512 92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKL---GTKLCLVDLPGYGFAYA-KEEVKDAWEELVSI 167 (192)
Q Consensus 92 ~~~i~lvG~~n~GKStlin~L~~~~~~~~~~~~~g~T~~~~~~~~---~~~~~lvDtPG~~~~~~-~~~~~~~~~~~~~l 167 (192)
...|+|||.||||||||||+|++.. ..++++|++|++++.... +..+.++||||+..... ...+... + +
T Consensus 159 ~adV~LVG~PNAGKSTLln~Ls~ak--pkIadypfTTl~P~lGvv~~~~~~f~laDtPGliegas~g~gLg~~---f--L 231 (500)
T PRK12296 159 VADVGLVGFPSAGKSSLISALSAAK--PKIADYPFTTLVPNLGVVQAGDTRFTVADVPGLIPGASEGKGLGLD---F--L 231 (500)
T ss_pred cceEEEEEcCCCCHHHHHHHHhcCC--ccccccCcccccceEEEEEECCeEEEEEECCCCccccchhhHHHHH---H--H
Confidence 3589999999999999999999974 457899999999875543 56899999999975222 2222222 2 4
Q ss_pred hccCceeEEEEEEecCC
Q 029512 168 SYRNFWSCTCFLIYIFY 184 (192)
Q Consensus 168 ~~~~~~~~v~~vvD~s~ 184 (192)
.+...++++++|+|++.
T Consensus 232 rhieradvLv~VVD~s~ 248 (500)
T PRK12296 232 RHIERCAVLVHVVDCAT 248 (500)
T ss_pred HHHHhcCEEEEEECCcc
Confidence 55677899999999975
No 38
>PRK09602 translation-associated GTPase; Reviewed
Probab=99.42 E-value=5.1e-13 Score=117.24 Aligned_cols=85 Identities=20% Similarity=0.121 Sum_probs=65.1
Q ss_pred CeEEEEecCCCcHHHHHHHHhhccCceeecCCCCceeEEEEEe---------------------------eCCeEEEEEC
Q 029512 93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFK---------------------------LGTKLCLVDL 145 (192)
Q Consensus 93 ~~i~lvG~~n~GKStlin~L~~~~~~~~~~~~~g~T~~~~~~~---------------------------~~~~~~lvDt 145 (192)
.+|+|+|.||||||||+|+|++.. ..+++++|+|.+++... ...++.++||
T Consensus 2 ~kigivG~pnvGKSTlfn~Lt~~~--~~~~~y~f~t~~p~~g~~~v~~~~~~~r~~~~~~~~~~~~~~~~~~~~i~i~D~ 79 (396)
T PRK09602 2 ITIGLVGKPNVGKSTFFNAATLAD--VEIANYPFTTIDPNVGVAYVRVECPCKELGVKCNPRNGKCIDGTRFIPVELIDV 79 (396)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCc--ccccCCCCcceeeeeeeeeeccCCchhhhhhhhccccccccCCcceeeEEEEEc
Confidence 489999999999999999999974 56789999998876532 1245789999
Q ss_pred CCCCCC-CChHHHHHHHHHHHhhhccCceeEEEEEEecCC
Q 029512 146 PGYGFA-YAKEEVKDAWEELVSISYRNFWSCTCFLIYIFY 184 (192)
Q Consensus 146 PG~~~~-~~~~~~~~~~~~~~~l~~~~~~~~v~~vvD~s~ 184 (192)
||+... .....+.+.+ +.+.+.+|++++|+|++.
T Consensus 80 aGl~~ga~~g~glg~~f-----L~~ir~ad~ll~Vvd~~~ 114 (396)
T PRK09602 80 AGLVPGAHEGRGLGNQF-----LDDLRQADALIHVVDASG 114 (396)
T ss_pred CCcCCCccchhhHHHHH-----HHHHHHCCEEEEEEeCCC
Confidence 998652 2233343333 566778999999999983
No 39
>KOG2486 consensus Predicted GTPase [General function prediction only]
Probab=99.42 E-value=4.3e-13 Score=111.02 Aligned_cols=100 Identities=40% Similarity=0.555 Sum_probs=83.7
Q ss_pred CCCCCCCCeEEEEecCCCcHHHHHHHHhhccCceeecC-CCCceeEEEEEeeCCeEEEEECCCCCCCCChHHHHHHHHHH
Q 029512 86 SFPAPDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSD-KPGLTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEEL 164 (192)
Q Consensus 86 ~~~~~~~~~i~lvG~~n~GKStlin~L~~~~~~~~~~~-~~g~T~~~~~~~~~~~~~lvDtPG~~~~~~~~~~~~~~~~~ 164 (192)
..|+...+++++.|.+|+|||||+|.++..+..+..+. .+|.|+..+.+..+..++++|.|||+.+.-..+..+.|..+
T Consensus 130 D~Pk~~~pe~~~~g~SNVGKSSLln~~~r~k~~~~t~k~K~g~Tq~in~f~v~~~~~~vDlPG~~~a~y~~~~~~d~~~~ 209 (320)
T KOG2486|consen 130 DCPKDKRPELAFYGRSNVGKSSLLNDLVRVKNIADTSKSKNGKTQAINHFHVGKSWYEVDLPGYGRAGYGFELPADWDKF 209 (320)
T ss_pred cCCCCCCceeeeecCCcccHHHHHhhhhhhhhhhhhcCCCCccceeeeeeeccceEEEEecCCcccccCCccCcchHhHh
Confidence 34556778999999999999999999998865555554 88999999999999999999999977755555555668777
Q ss_pred Hh--hhccCceeEEEEEEecCCc
Q 029512 165 VS--ISYRNFWSCTCFLIYIFYT 185 (192)
Q Consensus 165 ~~--l~~~~~~~~v~~vvD~s~~ 185 (192)
.. +.+++++..+++++|++.+
T Consensus 210 t~~Y~leR~nLv~~FLLvd~sv~ 232 (320)
T KOG2486|consen 210 TKSYLLERENLVRVFLLVDASVP 232 (320)
T ss_pred HHHHHHhhhhhheeeeeeeccCC
Confidence 66 7889999999999999865
No 40
>KOG1423 consensus Ras-like GTPase ERA [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]
Probab=99.42 E-value=7.8e-13 Score=110.86 Aligned_cols=94 Identities=21% Similarity=0.148 Sum_probs=70.2
Q ss_pred CCCeEEEEecCCCcHHHHHHHHhhccCceeecCCCCceeEEEEEe---eCCeEEEEECCCCCCCCChHHHHHHHHHHHh-
Q 029512 91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFK---LGTKLCLVDLPGYGFAYAKEEVKDAWEELVS- 166 (192)
Q Consensus 91 ~~~~i~lvG~~n~GKStlin~L~~~~~~~~~~~~~g~T~~~~~~~---~~~~~~lvDtPG~~~~~~~~~~~~~~~~~~~- 166 (192)
.-..|+++|.||||||||.|.+.|. +++.++....||+...... ...++.++||||+........-. ....++.
T Consensus 71 k~L~vavIG~PNvGKStLtN~mig~-kv~~vS~K~~TTr~~ilgi~ts~eTQlvf~DTPGlvs~~~~r~~~-l~~s~lq~ 148 (379)
T KOG1423|consen 71 KSLYVAVIGAPNVGKSTLTNQMIGQ-KVSAVSRKVHTTRHRILGIITSGETQLVFYDTPGLVSKKMHRRHH-LMMSVLQN 148 (379)
T ss_pred eEEEEEEEcCCCcchhhhhhHhhCC-ccccccccccceeeeeeEEEecCceEEEEecCCcccccchhhhHH-HHHHhhhC
Confidence 3468999999999999999999999 7899999999998865443 36789999999998643322111 1112222
Q ss_pred -hhccCceeEEEEEEecCCce
Q 029512 167 -ISYRNFWSCTCFLIYIFYTN 186 (192)
Q Consensus 167 -l~~~~~~~~v~~vvD~s~~~ 186 (192)
.....++|.|++|+|++.+-
T Consensus 149 ~~~a~q~AD~vvVv~Das~tr 169 (379)
T KOG1423|consen 149 PRDAAQNADCVVVVVDASATR 169 (379)
T ss_pred HHHHHhhCCEEEEEEeccCCc
Confidence 44567899999999999543
No 41
>KOG1491 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]
Probab=99.42 E-value=3.9e-13 Score=113.83 Aligned_cols=95 Identities=25% Similarity=0.244 Sum_probs=80.1
Q ss_pred CCCCeEEEEecCCCcHHHHHHHHhhccCceeecCCCCceeEEEEEee--------------------CCeEEEEECCCCC
Q 029512 90 PDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKL--------------------GTKLCLVDLPGYG 149 (192)
Q Consensus 90 ~~~~~i~lvG~~n~GKStlin~L~~~~~~~~~~~~~g~T~~~~~~~~--------------------~~~~~lvDtPG~~ 149 (192)
.+.+++++||.||+||||++|+|+... +.++++|+||.+++.... ...+.++|.+|+.
T Consensus 18 ~~~lkiGIVGlPNvGKST~fnalT~~~--a~~~NfPF~TIdPn~a~V~v~d~Rfd~l~~~Y~~~~~vpa~l~v~DIAGLv 95 (391)
T KOG1491|consen 18 GNNLKIGIVGLPNVGKSTFFNALTKSK--AGAANFPFCTIDPNEARVEVPDSRFDLLCPIYGPKSKVPAFLTVYDIAGLV 95 (391)
T ss_pred CCcceeeEeeCCCCchHHHHHHHhcCC--CCccCCCcceeccccceeecCchHHHHHHHhcCCcceeeeeEEEEeecccc
Confidence 356799999999999999999999984 459999999999875432 2468999999987
Q ss_pred C-CCChHHHHHHHHHHHhhhccCceeEEEEEEecCCceEEEEe
Q 029512 150 F-AYAKEEVKDAWEELVSISYRNFWSCTCFLIYIFYTNVIILY 191 (192)
Q Consensus 150 ~-~~~~~~~~~~~~~~~~l~~~~~~~~v~~vvD~s~~~~~~~~ 191 (192)
. +....++.+.| |.+.+.+|.+++||+|+.+..++++
T Consensus 96 kGAs~G~GLGN~F-----Ls~iR~vDaifhVVr~f~d~di~hv 133 (391)
T KOG1491|consen 96 KGASAGEGLGNKF-----LSHIRHVDAIFHVVRAFEDTDIIHV 133 (391)
T ss_pred cCcccCcCchHHH-----HHhhhhccceeEEEEecCcccceec
Confidence 6 56667788887 8889999999999999998887763
No 42
>COG1163 DRG Predicted GTPase [General function prediction only]
Probab=99.41 E-value=6.7e-13 Score=111.97 Aligned_cols=91 Identities=23% Similarity=0.233 Sum_probs=73.0
Q ss_pred CCCCCCeEEEEecCCCcHHHHHHHHhhccCceeecCCCCceeEEE---EEeeCCeEEEEECCCCCCCCC-hHH-HHHHHH
Q 029512 88 PAPDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTIN---FFKLGTKLCLVDLPGYGFAYA-KEE-VKDAWE 162 (192)
Q Consensus 88 ~~~~~~~i~lvG~~n~GKStlin~L~~~~~~~~~~~~~g~T~~~~---~~~~~~~~~lvDtPG~~~~~~-~~~-~~~~~~ 162 (192)
++.+..+++|||.|++|||||+|.|++.. ..++++++||..+. ..+.|..++++|+||+....+ ... -.+.
T Consensus 59 ~KsGda~v~lVGfPsvGKStLL~~LTnt~--seva~y~FTTl~~VPG~l~Y~ga~IQild~Pgii~gas~g~grG~~v-- 134 (365)
T COG1163 59 KKSGDATVALVGFPSVGKSTLLNKLTNTK--SEVADYPFTTLEPVPGMLEYKGAQIQLLDLPGIIEGASSGRGRGRQV-- 134 (365)
T ss_pred eccCCeEEEEEcCCCccHHHHHHHHhCCC--ccccccCceecccccceEeecCceEEEEcCcccccCcccCCCCccee--
Confidence 45677899999999999999999999986 78999999999874 555799999999999876222 111 1122
Q ss_pred HHHhhhccCceeEEEEEEecCCce
Q 029512 163 ELVSISYRNFWSCTCFLIYIFYTN 186 (192)
Q Consensus 163 ~~~~l~~~~~~~~v~~vvD~s~~~ 186 (192)
+..++++|++++|+|...+.
T Consensus 135 ----lsv~R~ADlIiiVld~~~~~ 154 (365)
T COG1163 135 ----LSVARNADLIIIVLDVFEDP 154 (365)
T ss_pred ----eeeeccCCEEEEEEecCCCh
Confidence 67789999999999997543
No 43
>PRK09563 rbgA GTPase YlqF; Reviewed
Probab=99.40 E-value=7.8e-13 Score=111.49 Aligned_cols=62 Identities=34% Similarity=0.604 Sum_probs=55.6
Q ss_pred CCCCeEEEEecCCCcHHHHHHHHhhccCceeecCCCCceeEEEEEeeCCeEEEEECCCCCCCC
Q 029512 90 PDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAY 152 (192)
Q Consensus 90 ~~~~~i~lvG~~n~GKStlin~L~~~~~~~~~~~~~g~T~~~~~~~~~~~~~lvDtPG~~~~~ 152 (192)
....+++++|.||||||||+|+|++. ..+.+++.||+|++.++...+..+.++||||+..+.
T Consensus 119 ~~~~~~~~~G~pnvGKSsliN~l~~~-~~~~~~~~~g~T~~~~~~~~~~~~~l~DtPGi~~~~ 180 (287)
T PRK09563 119 PRAIRAMIIGIPNVGKSTLINRLAGK-KIAKTGNRPGVTKAQQWIKLGKGLELLDTPGILWPK 180 (287)
T ss_pred cCceEEEEECCCCCCHHHHHHHHhcC-CccccCCCCCeEEEEEEEEeCCcEEEEECCCcCCCC
Confidence 34579999999999999999999998 567889999999999998888899999999997754
No 44
>cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes. It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance.
Probab=99.40 E-value=3.7e-12 Score=95.71 Aligned_cols=90 Identities=27% Similarity=0.196 Sum_probs=63.8
Q ss_pred CeEEEEecCCCcHHHHHHHHhhccCceeecCCCCceeEEEEEe---eCCeEEEEECCCCCCCCChHHHHHHHHHHHhhhc
Q 029512 93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFK---LGTKLCLVDLPGYGFAYAKEEVKDAWEELVSISY 169 (192)
Q Consensus 93 ~~i~lvG~~n~GKStlin~L~~~~~~~~~~~~~g~T~~~~~~~---~~~~~~lvDtPG~~~~~~~~~~~~~~~~~~~l~~ 169 (192)
.+|+++|.+|+|||||+|+|++. ....+++.+++|++..... .+..+.++||||+......-. ...+... ...
T Consensus 2 ~~i~l~G~~~~GKstli~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~-~~~~~~~--~~~ 77 (157)
T cd04164 2 IKVVIVGKPNVGKSSLLNALAGR-DRAIVSDIAGTTRDVIEESIDIGGIPVRLIDTAGIRETEDEIE-KIGIERA--REA 77 (157)
T ss_pred cEEEEECCCCCCHHHHHHHHHCC-ceEeccCCCCCccceEEEEEEeCCEEEEEEECCCcCCCcchHH-HHHHHHH--HHH
Confidence 48999999999999999999997 4566778889888765332 356899999999876332211 0111111 223
Q ss_pred cCceeEEEEEEecCCce
Q 029512 170 RNFWSCTCFLIYIFYTN 186 (192)
Q Consensus 170 ~~~~~~v~~vvD~s~~~ 186 (192)
...++++++|+|++.+.
T Consensus 78 ~~~~~~~v~v~d~~~~~ 94 (157)
T cd04164 78 IEEADLVLFVIDASRGL 94 (157)
T ss_pred HhhCCEEEEEEECCCCC
Confidence 45689999999998543
No 45
>cd01895 EngA2 EngA2 subfamily. This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.39 E-value=2.1e-12 Score=98.33 Aligned_cols=93 Identities=30% Similarity=0.250 Sum_probs=64.2
Q ss_pred CCeEEEEecCCCcHHHHHHHHhhccCceeecCCCCceeEEE---EEeeCCeEEEEECCCCCCCCChHHHHHHHHHHHhhh
Q 029512 92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTIN---FFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVSIS 168 (192)
Q Consensus 92 ~~~i~lvG~~n~GKStlin~L~~~~~~~~~~~~~g~T~~~~---~~~~~~~~~lvDtPG~~~~~~~~~~~~~~~~~~~l~ 168 (192)
.++|+++|.+|+|||||+|+|++. .....++.+++|++.. ....+..+.+|||||+..........+.+.....+.
T Consensus 2 ~~~i~i~G~~~~GKstli~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~e~~~~~~~~~ 80 (174)
T cd01895 2 PIRIAIIGRPNVGKSSLVNALLGE-ERVIVSDIAGTTRDSIDVPFEYDGKKYTLIDTAGIRRKGKVEEGIEKYSVLRTLK 80 (174)
T ss_pred CcEEEEEcCCCCCHHHHHHHHhCc-cceeccCCCCCccCceeeEEEECCeeEEEEECCCCccccchhccHHHHHHHHHHH
Confidence 468999999999999999999987 4455667777776653 223467799999999876432221111121111133
Q ss_pred ccCceeEEEEEEecCCc
Q 029512 169 YRNFWSCTCFLIYIFYT 185 (192)
Q Consensus 169 ~~~~~~~v~~vvD~s~~ 185 (192)
....+|++++|+|++.+
T Consensus 81 ~~~~~d~vi~v~d~~~~ 97 (174)
T cd01895 81 AIERADVVLLVIDATEG 97 (174)
T ss_pred HHhhcCeEEEEEeCCCC
Confidence 45678999999999776
No 46
>cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans. NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins.
Probab=99.39 E-value=1.9e-12 Score=99.24 Aligned_cols=90 Identities=24% Similarity=0.237 Sum_probs=58.7
Q ss_pred CeEEEEecCCCcHHHHHHHHhhccCceeecCCCCceeEEEEEe---eCCeEEEEECCCCCCCCChHHHHHHHHHHHhhhc
Q 029512 93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFK---LGTKLCLVDLPGYGFAYAKEEVKDAWEELVSISY 169 (192)
Q Consensus 93 ~~i~lvG~~n~GKStlin~L~~~~~~~~~~~~~g~T~~~~~~~---~~~~~~lvDtPG~~~~~~~~~~~~~~~~~~~l~~ 169 (192)
|+|+++|++|+|||||+|+|++.. ..++..+++|.+..... .+.++.+|||||+.+....+...-....+..+..
T Consensus 1 ~~i~~~G~~~~GKssli~~l~~~~--~~~~~~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~~~~ 78 (168)
T cd01897 1 PTLVIAGYPNVGKSSLVNKLTRAK--PEVAPYPFTTKSLFVGHFDYKYLRWQVIDTPGLLDRPLEERNTIEMQAITALAH 78 (168)
T ss_pred CeEEEEcCCCCCHHHHHHHHhcCC--CccCCCCCcccceeEEEEccCceEEEEEECCCcCCccccCCchHHHHHHHHHHh
Confidence 589999999999999999999974 33556677787765433 2578999999998542111110000111111211
Q ss_pred cCceeEEEEEEecCCce
Q 029512 170 RNFWSCTCFLIYIFYTN 186 (192)
Q Consensus 170 ~~~~~~v~~vvD~s~~~ 186 (192)
..|++++|+|++++.
T Consensus 79 --~~d~~l~v~d~~~~~ 93 (168)
T cd01897 79 --LRAAVLFLFDPSETC 93 (168)
T ss_pred --ccCcEEEEEeCCccc
Confidence 247899999998653
No 47
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.39 E-value=1.8e-12 Score=114.38 Aligned_cols=87 Identities=25% Similarity=0.280 Sum_probs=64.8
Q ss_pred eEEEEecCCCcHHHHHHHHhhccCceeecCCCCceeEEEEEe---eCCeEEEEECCCCCCCCChHHHHHHHHHHHhhhcc
Q 029512 94 EIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFK---LGTKLCLVDLPGYGFAYAKEEVKDAWEELVSISYR 170 (192)
Q Consensus 94 ~i~lvG~~n~GKStlin~L~~~~~~~~~~~~~g~T~~~~~~~---~~~~~~lvDtPG~~~~~~~~~~~~~~~~~~~l~~~ 170 (192)
+|+++|++|||||||+|+|++. ..+.+++.+|+|++..... .+..+.+|||||+... .+.+.+.+.... ....
T Consensus 1 ~i~ivG~~nvGKStL~n~l~~~-~~~~v~~~~g~t~d~~~~~~~~~~~~~~liDTpG~~~~--~~~~~~~~~~~~-~~~~ 76 (429)
T TIGR03594 1 VVAIVGRPNVGKSTLFNRLTGK-RDAIVSDTPGVTRDRKYGDAEWGGREFILIDTGGIEED--DDGLDKQIREQA-EIAI 76 (429)
T ss_pred CEEEECCCCCCHHHHHHHHhCC-CcceecCCCCcccCceEEEEEECCeEEEEEECCCCCCc--chhHHHHHHHHH-HHHH
Confidence 4899999999999999999998 4678899999999876443 4788999999998642 222222222211 2334
Q ss_pred CceeEEEEEEecCC
Q 029512 171 NFWSCTCFLIYIFY 184 (192)
Q Consensus 171 ~~~~~v~~vvD~s~ 184 (192)
+.+|++++|+|++.
T Consensus 77 ~~ad~vl~vvD~~~ 90 (429)
T TIGR03594 77 EEADVILFVVDGRE 90 (429)
T ss_pred hhCCEEEEEEeCCC
Confidence 67899999999875
No 48
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=99.39 E-value=1.1e-12 Score=99.07 Aligned_cols=56 Identities=39% Similarity=0.568 Sum_probs=50.6
Q ss_pred eEEEEecCCCcHHHHHHHHhhccCceeecCCCCceeEEEEEeeCCeEEEEECCCCCC
Q 029512 94 EIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGF 150 (192)
Q Consensus 94 ~i~lvG~~n~GKStlin~L~~~~~~~~~~~~~g~T~~~~~~~~~~~~~lvDtPG~~~ 150 (192)
+++++|.+|+|||||+|+|++. ....++..+|+|++.+....+..+.++||||+..
T Consensus 85 ~~~~~G~~~vGKstlin~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~ 140 (141)
T cd01857 85 TIGLVGYPNVGKSSLINALVGK-KKVSVSATPGKTKHFQTIFLTPTITLCDCPGLVF 140 (141)
T ss_pred EEEEECCCCCCHHHHHHHHhCC-CceeeCCCCCcccceEEEEeCCCEEEEECCCcCC
Confidence 8999999999999999999998 5567888999999988888877899999999864
No 49
>PRK00089 era GTPase Era; Reviewed
Probab=99.38 E-value=3e-12 Score=107.66 Aligned_cols=88 Identities=27% Similarity=0.218 Sum_probs=63.8
Q ss_pred CeEEEEecCCCcHHHHHHHHhhccCceeecCCCCceeEEEEEe---eCCeEEEEECCCCCCCCChHHHHHHHHHHHhhhc
Q 029512 93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFK---LGTKLCLVDLPGYGFAYAKEEVKDAWEELVSISY 169 (192)
Q Consensus 93 ~~i~lvG~~n~GKStlin~L~~~~~~~~~~~~~g~T~~~~~~~---~~~~~~lvDtPG~~~~~~~~~~~~~~~~~~~l~~ 169 (192)
..|+++|.+|||||||+|+|+|. ..+.+++.+.+|++..... .+..+.++||||+..+.. .+.+.+.... ...
T Consensus 6 g~V~iiG~pn~GKSTLin~L~g~-~~~~vs~~~~tt~~~i~~i~~~~~~qi~~iDTPG~~~~~~--~l~~~~~~~~-~~~ 81 (292)
T PRK00089 6 GFVAIVGRPNVGKSTLLNALVGQ-KISIVSPKPQTTRHRIRGIVTEDDAQIIFVDTPGIHKPKR--ALNRAMNKAA-WSS 81 (292)
T ss_pred EEEEEECCCCCCHHHHHHHHhCC-ceeecCCCCCcccccEEEEEEcCCceEEEEECCCCCCchh--HHHHHHHHHH-HHH
Confidence 37999999999999999999998 6788888898888754322 346899999999876331 1111111111 233
Q ss_pred cCceeEEEEEEecCC
Q 029512 170 RNFWSCTCFLIYIFY 184 (192)
Q Consensus 170 ~~~~~~v~~vvD~s~ 184 (192)
...+|++++|+|++.
T Consensus 82 ~~~~D~il~vvd~~~ 96 (292)
T PRK00089 82 LKDVDLVLFVVDADE 96 (292)
T ss_pred HhcCCEEEEEEeCCC
Confidence 457899999999986
No 50
>cd01899 Ygr210 Ygr210 subfamily. Ygr210 is a member of Obg-like family and present in archaea and fungi. They are characterized by a distinct glycine-rich motif immediately following the Walker B motif. The Ygr210 and YyaF/YchF subfamilies appear to form one major branch of the Obg-like family. Among eukaryotes, the Ygr210 subfamily is represented only in fungi. These fungal proteins form a tight cluster with their archaeal orthologs, which suggests the possibility of horizontal transfer from archaea to fungi.
Probab=99.38 E-value=1.1e-12 Score=112.14 Aligned_cols=83 Identities=19% Similarity=0.124 Sum_probs=62.7
Q ss_pred EEEEecCCCcHHHHHHHHhhccCceeecCCCCceeEEEEEe---------------------------eCCeEEEEECCC
Q 029512 95 IAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFK---------------------------LGTKLCLVDLPG 147 (192)
Q Consensus 95 i~lvG~~n~GKStlin~L~~~~~~~~~~~~~g~T~~~~~~~---------------------------~~~~~~lvDtPG 147 (192)
|+++|.||||||||+|+|++.. ..++++|++|.++.... ...++.++||||
T Consensus 1 i~ivG~pnvGKStLfn~lt~~~--~~~~~~pftT~~p~~g~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~v~i~l~D~aG 78 (318)
T cd01899 1 IGLVGKPNAGKSTFFNAATLAD--VEIANYPFTTIDPNVGVGYVRVECPCKELGVSCNPRYGKCIDGKRYVPVELIDVAG 78 (318)
T ss_pred CEEECCCCCCHHHHHHHHhCCC--CcccCCCCccccceeEEEEEecCCCchhhhhhhcccccccccCcCcceEEEEECCC
Confidence 5899999999999999999974 67899999998876321 124689999999
Q ss_pred CCCC-CChHHHHHHHHHHHhhhccCceeEEEEEEecCC
Q 029512 148 YGFA-YAKEEVKDAWEELVSISYRNFWSCTCFLIYIFY 184 (192)
Q Consensus 148 ~~~~-~~~~~~~~~~~~~~~l~~~~~~~~v~~vvD~s~ 184 (192)
+... .....+.+.+ +...+++|++++|+|++.
T Consensus 79 lv~ga~~~~glg~~f-----L~~ir~aD~ii~Vvd~~~ 111 (318)
T cd01899 79 LVPGAHEGKGLGNKF-----LDDLRDADALIHVVDASG 111 (318)
T ss_pred CCCCccchhhHHHHH-----HHHHHHCCEEEEEEeCCC
Confidence 8642 2223333332 556778999999999974
No 51
>PRK00093 GTP-binding protein Der; Reviewed
Probab=99.38 E-value=4e-12 Score=112.48 Aligned_cols=94 Identities=27% Similarity=0.224 Sum_probs=69.1
Q ss_pred CCCeEEEEecCCCcHHHHHHHHhhccCceeecCCCCceeEEEE---EeeCCeEEEEECCCCCCCCChHHHHHHHHHHHhh
Q 029512 91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINF---FKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVSI 167 (192)
Q Consensus 91 ~~~~i~lvG~~n~GKStlin~L~~~~~~~~~~~~~g~T~~~~~---~~~~~~~~lvDtPG~~~~~~~~~~~~~~~~~~~l 167 (192)
..++|+++|.+|+|||||+|+|++. ....+++.+|+|++... ...+..+.++||||+..........+.+.....+
T Consensus 172 ~~~~v~ivG~~n~GKStlin~ll~~-~~~~~~~~~gtt~~~~~~~~~~~~~~~~lvDT~G~~~~~~~~~~~e~~~~~~~~ 250 (435)
T PRK00093 172 EPIKIAIIGRPNVGKSSLINALLGE-ERVIVSDIAGTTRDSIDTPFERDGQKYTLIDTAGIRRKGKVTEGVEKYSVIRTL 250 (435)
T ss_pred cceEEEEECCCCCCHHHHHHHHhCC-CceeecCCCCceEEEEEEEEEECCeeEEEEECCCCCCCcchhhHHHHHHHHHHH
Confidence 4679999999999999999999987 45778899999998642 2347789999999987633322222222212224
Q ss_pred hccCceeEEEEEEecCCc
Q 029512 168 SYRNFWSCTCFLIYIFYT 185 (192)
Q Consensus 168 ~~~~~~~~v~~vvD~s~~ 185 (192)
...+.+|++++|+|++.+
T Consensus 251 ~~~~~ad~~ilViD~~~~ 268 (435)
T PRK00093 251 KAIERADVVLLVIDATEG 268 (435)
T ss_pred HHHHHCCEEEEEEeCCCC
Confidence 455678999999999864
No 52
>cd01849 YlqF_related_GTPase YlqF-related GTPases. These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.
Probab=99.38 E-value=1.2e-12 Score=100.39 Aligned_cols=58 Identities=34% Similarity=0.487 Sum_probs=51.9
Q ss_pred CCCCeEEEEecCCCcHHHHHHHHhhccCceeecCCCCceeEEEEEeeCCeEEEEECCCC
Q 029512 90 PDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGY 148 (192)
Q Consensus 90 ~~~~~i~lvG~~n~GKStlin~L~~~~~~~~~~~~~g~T~~~~~~~~~~~~~lvDtPG~ 148 (192)
....+++++|.||+|||||+|+|++. ....++..+|+|++.+....+..+.++||||+
T Consensus 98 ~~~~~~~~~G~~~~GKstlin~l~~~-~~~~~~~~~~~t~~~~~~~~~~~~~liDtPG~ 155 (155)
T cd01849 98 KKSITVGVIGYPNVGKSSVINALLNK-LKLKVGNVPGTTTSQQEVKLDNKIKLLDTPGI 155 (155)
T ss_pred ccCcEEEEEccCCCCHHHHHHHHHcc-ccccccCCCCcccceEEEEecCCEEEEECCCC
Confidence 35679999999999999999999997 44668889999999998888889999999996
No 53
>COG3596 Predicted GTPase [General function prediction only]
Probab=99.37 E-value=1.7e-12 Score=107.45 Aligned_cols=91 Identities=24% Similarity=0.253 Sum_probs=63.6
Q ss_pred CCCeEEEEecCCCcHHHHHHHHhhccCceeecCCCCceeEEE---EEeeCCeEEEEECCCCCCCCChH-HHHHHHHHHHh
Q 029512 91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTIN---FFKLGTKLCLVDLPGYGFAYAKE-EVKDAWEELVS 166 (192)
Q Consensus 91 ~~~~i~lvG~~n~GKStlin~L~~~~~~~~~~~~~g~T~~~~---~~~~~~~~~lvDtPG~~~~~~~~-~~~~~~~~~~~ 166 (192)
....|+++|.||+|||||||+|+.. ....++..+.+|.... ..+.+..+.||||||+++....+ +.++...++
T Consensus 38 ~pvnvLi~G~TG~GKSSliNALF~~-~~~~v~~vg~~t~~~~~~~~~~~~~~l~lwDtPG~gdg~~~D~~~r~~~~d~-- 114 (296)
T COG3596 38 EPVNVLLMGATGAGKSSLINALFQG-EVKEVSKVGVGTDITTRLRLSYDGENLVLWDTPGLGDGKDKDAEHRQLYRDY-- 114 (296)
T ss_pred CceeEEEecCCCCcHHHHHHHHHhc-cCceeeecccCCCchhhHHhhccccceEEecCCCcccchhhhHHHHHHHHHH--
Confidence 3457789999999999999999975 4456665544443322 23356899999999999854333 344444333
Q ss_pred hhccCceeEEEEEEecCCceE
Q 029512 167 ISYRNFWSCTCFLIYIFYTNV 187 (192)
Q Consensus 167 l~~~~~~~~v~~vvD~s~~~~ 187 (192)
...+|++++++|+.++++
T Consensus 115 ---l~~~DLvL~l~~~~draL 132 (296)
T COG3596 115 ---LPKLDLVLWLIKADDRAL 132 (296)
T ss_pred ---hhhccEEEEeccCCCccc
Confidence 345689999999988764
No 54
>PRK03003 GTP-binding protein Der; Reviewed
Probab=99.37 E-value=3.9e-12 Score=114.02 Aligned_cols=91 Identities=23% Similarity=0.316 Sum_probs=66.4
Q ss_pred CCCeEEEEecCCCcHHHHHHHHhhccCceeecCCCCceeEEEEEe---eCCeEEEEECCCCCCCCChHHHHHHHHHHHhh
Q 029512 91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFK---LGTKLCLVDLPGYGFAYAKEEVKDAWEELVSI 167 (192)
Q Consensus 91 ~~~~i~lvG~~n~GKStlin~L~~~~~~~~~~~~~g~T~~~~~~~---~~~~~~lvDtPG~~~~~~~~~~~~~~~~~~~l 167 (192)
..++|+++|.+|||||||+|+|++. ..+.+++.+|+|++..... .+..+.+|||||+.... ..+...+.... .
T Consensus 37 ~~~~V~IvG~~nvGKSSL~nrl~~~-~~~~v~~~~gvT~d~~~~~~~~~~~~~~l~DT~G~~~~~--~~~~~~~~~~~-~ 112 (472)
T PRK03003 37 PLPVVAVVGRPNVGKSTLVNRILGR-REAVVEDVPGVTRDRVSYDAEWNGRRFTVVDTGGWEPDA--KGLQASVAEQA-E 112 (472)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCc-CcccccCCCCCCEeeEEEEEEECCcEEEEEeCCCcCCcc--hhHHHHHHHHH-H
Confidence 4579999999999999999999997 4567889999999876543 36789999999986311 11222221111 1
Q ss_pred hccCceeEEEEEEecCCc
Q 029512 168 SYRNFWSCTCFLIYIFYT 185 (192)
Q Consensus 168 ~~~~~~~~v~~vvD~s~~ 185 (192)
...+.+|++++|+|++..
T Consensus 113 ~~~~~aD~il~VvD~~~~ 130 (472)
T PRK03003 113 VAMRTADAVLFVVDATVG 130 (472)
T ss_pred HHHHhCCEEEEEEECCCC
Confidence 234568999999999864
No 55
>cd01855 YqeH YqeH. YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.
Probab=99.37 E-value=1.2e-12 Score=103.53 Aligned_cols=57 Identities=35% Similarity=0.475 Sum_probs=49.1
Q ss_pred CCeEEEEecCCCcHHHHHHHHhhccC-------ceeecCCCCceeEEEEEeeCCeEEEEECCCC
Q 029512 92 LPEIAFAGRSNVGKSSMLNALTRQWG-------VVRTSDKPGLTQTINFFKLGTKLCLVDLPGY 148 (192)
Q Consensus 92 ~~~i~lvG~~n~GKStlin~L~~~~~-------~~~~~~~~g~T~~~~~~~~~~~~~lvDtPG~ 148 (192)
...++++|.+|+|||||||+|++... ...++..+|+|++.+.+..+..+.++|||||
T Consensus 127 ~~~~~~~G~~nvGKStliN~l~~~~~~~~~~~~~~~~~~~~gtT~~~~~~~~~~~~~~~DtPG~ 190 (190)
T cd01855 127 GGDVYVVGATNVGKSTLINALLKKDNGKKKLKDLLTTSPIPGTTLDLIKIPLGNGKKLYDTPGI 190 (190)
T ss_pred CCcEEEEcCCCCCHHHHHHHHHHhcccccccccccccCCCCCeeeeeEEEecCCCCEEEeCcCC
Confidence 35899999999999999999998531 2467788999999998888778999999996
No 56
>PRK03003 GTP-binding protein Der; Reviewed
Probab=99.37 E-value=2.5e-12 Score=115.28 Aligned_cols=94 Identities=22% Similarity=0.184 Sum_probs=67.0
Q ss_pred CCCeEEEEecCCCcHHHHHHHHhhccCceeecCCCCceeEEE---EEeeCCeEEEEECCCCCCCCChHHHHHHHHHHHhh
Q 029512 91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTIN---FFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVSI 167 (192)
Q Consensus 91 ~~~~i~lvG~~n~GKStlin~L~~~~~~~~~~~~~g~T~~~~---~~~~~~~~~lvDtPG~~~~~~~~~~~~~~~~~~~l 167 (192)
..++|+++|.+|||||||+|+|++. ....+++.+|+|++.. +...+..+.+|||||+............+..+...
T Consensus 210 ~~~kI~iiG~~nvGKSSLin~l~~~-~~~~~s~~~gtT~d~~~~~~~~~~~~~~l~DTaG~~~~~~~~~~~e~~~~~~~~ 288 (472)
T PRK03003 210 GPRRVALVGKPNVGKSSLLNKLAGE-ERSVVDDVAGTTVDPVDSLIELGGKTWRFVDTAGLRRRVKQASGHEYYASLRTH 288 (472)
T ss_pred cceEEEEECCCCCCHHHHHHHHhCC-CcccccCCCCccCCcceEEEEECCEEEEEEECCCccccccccchHHHHHHHHHH
Confidence 4579999999999999999999997 4456888999998764 22347789999999986422111111222222223
Q ss_pred hccCceeEEEEEEecCCc
Q 029512 168 SYRNFWSCTCFLIYIFYT 185 (192)
Q Consensus 168 ~~~~~~~~v~~vvD~s~~ 185 (192)
...+.+|++++|+|++..
T Consensus 289 ~~i~~ad~vilV~Da~~~ 306 (472)
T PRK03003 289 AAIEAAEVAVVLIDASEP 306 (472)
T ss_pred HHHhcCCEEEEEEeCCCC
Confidence 345678999999998764
No 57
>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF. Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.
Probab=99.36 E-value=2.7e-12 Score=107.56 Aligned_cols=60 Identities=32% Similarity=0.536 Sum_probs=54.2
Q ss_pred CCCeEEEEecCCCcHHHHHHHHhhccCceeecCCCCceeEEEEEeeCCeEEEEECCCCCCC
Q 029512 91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFA 151 (192)
Q Consensus 91 ~~~~i~lvG~~n~GKStlin~L~~~~~~~~~~~~~g~T~~~~~~~~~~~~~lvDtPG~~~~ 151 (192)
...+++++|.||||||||+|+|++. ....+++.||+|+..+++..+..+.++||||+..+
T Consensus 117 ~~~~~~~vG~~nvGKSslin~l~~~-~~~~~~~~~g~T~~~~~~~~~~~~~l~DtPG~~~~ 176 (276)
T TIGR03596 117 RPIRAMIVGIPNVGKSTLINRLAGK-KVAKVGNRPGVTKGQQWIKLSDGLELLDTPGILWP 176 (276)
T ss_pred CCeEEEEECCCCCCHHHHHHHHhCC-CccccCCCCCeecceEEEEeCCCEEEEECCCcccC
Confidence 4578999999999999999999997 56788999999999998888889999999999664
No 58
>PRK15494 era GTPase Era; Provisional
Probab=99.36 E-value=3.8e-12 Score=109.67 Aligned_cols=88 Identities=22% Similarity=0.162 Sum_probs=63.4
Q ss_pred CCeEEEEecCCCcHHHHHHHHhhccCceeecCCCCceeEEEEE---eeCCeEEEEECCCCCCCCChHHHHHHH-HHHHhh
Q 029512 92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFF---KLGTKLCLVDLPGYGFAYAKEEVKDAW-EELVSI 167 (192)
Q Consensus 92 ~~~i~lvG~~n~GKStlin~L~~~~~~~~~~~~~g~T~~~~~~---~~~~~~~lvDtPG~~~~~~~~~~~~~~-~~~~~l 167 (192)
..+|+++|.+|||||||+|+|++. ..+.+++.+++|++.... ..+.++.+|||||+...... +...+ ... .
T Consensus 52 ~~kV~ivG~~nvGKSTLin~l~~~-k~~ivs~k~~tTr~~~~~~~~~~~~qi~~~DTpG~~~~~~~--l~~~~~r~~--~ 126 (339)
T PRK15494 52 TVSVCIIGRPNSGKSTLLNRIIGE-KLSIVTPKVQTTRSIITGIITLKDTQVILYDTPGIFEPKGS--LEKAMVRCA--W 126 (339)
T ss_pred eeEEEEEcCCCCCHHHHHHHHhCC-ceeeccCCCCCccCcEEEEEEeCCeEEEEEECCCcCCCccc--HHHHHHHHH--H
Confidence 458999999999999999999997 667788889999875432 23678999999998643221 11111 111 2
Q ss_pred hccCceeEEEEEEecCC
Q 029512 168 SYRNFWSCTCFLIYIFY 184 (192)
Q Consensus 168 ~~~~~~~~v~~vvD~s~ 184 (192)
.....+|++++|+|++.
T Consensus 127 ~~l~~aDvil~VvD~~~ 143 (339)
T PRK15494 127 SSLHSADLVLLIIDSLK 143 (339)
T ss_pred HHhhhCCEEEEEEECCC
Confidence 23456899999999865
No 59
>TIGR02729 Obg_CgtA Obg family GTPase CgtA. This model describes a univeral, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. This GTPase, related to the nucleolar protein Obg, is designated CgtA in bacteria. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure. Recent work done in Vibrio cholerae shows an essential role in the stringent response, in which RelA-dependent ability to synthesize the alarmone ppGpp is required for deletion of this GTPase to be lethal.
Probab=99.36 E-value=2e-12 Score=110.98 Aligned_cols=87 Identities=20% Similarity=0.220 Sum_probs=65.6
Q ss_pred CCeEEEEecCCCcHHHHHHHHhhccCceeecCCCCceeEEEEEee---C-CeEEEEECCCCCCCC-ChHHHHHHHHHHHh
Q 029512 92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKL---G-TKLCLVDLPGYGFAY-AKEEVKDAWEELVS 166 (192)
Q Consensus 92 ~~~i~lvG~~n~GKStlin~L~~~~~~~~~~~~~g~T~~~~~~~~---~-~~~~lvDtPG~~~~~-~~~~~~~~~~~~~~ 166 (192)
...|+|+|.||||||||+|+|++.. ..+++++++|..++.... + ..+.++||||+.... ....+...|
T Consensus 157 ~adV~lvG~pnaGKSTLl~~lt~~~--~~va~y~fTT~~p~ig~v~~~~~~~~~i~D~PGli~~a~~~~gLg~~f----- 229 (329)
T TIGR02729 157 LADVGLVGLPNAGKSTLISAVSAAK--PKIADYPFTTLVPNLGVVRVDDGRSFVIADIPGLIEGASEGAGLGHRF----- 229 (329)
T ss_pred cccEEEEcCCCCCHHHHHHHHhcCC--ccccCCCCCccCCEEEEEEeCCceEEEEEeCCCcccCCcccccHHHHH-----
Confidence 3588999999999999999999874 568899999988765442 3 789999999986522 222233333
Q ss_pred hhccCceeEEEEEEecCCc
Q 029512 167 ISYRNFWSCTCFLIYIFYT 185 (192)
Q Consensus 167 l~~~~~~~~v~~vvD~s~~ 185 (192)
+.+...++++++|+|++..
T Consensus 230 lrhierad~ll~VvD~s~~ 248 (329)
T TIGR02729 230 LKHIERTRVLLHLIDISPL 248 (329)
T ss_pred HHHHHhhCEEEEEEcCccc
Confidence 3445568999999999865
No 60
>PRK00093 GTP-binding protein Der; Reviewed
Probab=99.36 E-value=4.5e-12 Score=112.16 Aligned_cols=89 Identities=26% Similarity=0.300 Sum_probs=65.6
Q ss_pred CeEEEEecCCCcHHHHHHHHhhccCceeecCCCCceeEEEEEe---eCCeEEEEECCCCCCCCChHHHHHHHHHHHhhhc
Q 029512 93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFK---LGTKLCLVDLPGYGFAYAKEEVKDAWEELVSISY 169 (192)
Q Consensus 93 ~~i~lvG~~n~GKStlin~L~~~~~~~~~~~~~g~T~~~~~~~---~~~~~~lvDtPG~~~~~~~~~~~~~~~~~~~l~~ 169 (192)
++|+++|.+|||||||+|+|++. ..+.+++.+|+|++..... .+..+.+|||||+.... +.....+.... ...
T Consensus 2 ~~I~ivG~~~vGKStL~n~l~~~-~~~~v~~~~~~t~d~~~~~~~~~~~~~~liDT~G~~~~~--~~~~~~~~~~~-~~~ 77 (435)
T PRK00093 2 PVVAIVGRPNVGKSTLFNRLTGK-RDAIVADTPGVTRDRIYGEAEWLGREFILIDTGGIEPDD--DGFEKQIREQA-ELA 77 (435)
T ss_pred CEEEEECCCCCCHHHHHHHHhCC-CceeeCCCCCCcccceEEEEEECCcEEEEEECCCCCCcc--hhHHHHHHHHH-HHH
Confidence 68999999999999999999998 5577889999998875433 37889999999987521 11212111111 223
Q ss_pred cCceeEEEEEEecCCc
Q 029512 170 RNFWSCTCFLIYIFYT 185 (192)
Q Consensus 170 ~~~~~~v~~vvD~s~~ 185 (192)
...+|++++|+|++.+
T Consensus 78 ~~~ad~il~vvd~~~~ 93 (435)
T PRK00093 78 IEEADVILFVVDGRAG 93 (435)
T ss_pred HHhCCEEEEEEECCCC
Confidence 4568999999999763
No 61
>PRK12288 GTPase RsgA; Reviewed
Probab=99.35 E-value=1.8e-12 Score=112.06 Aligned_cols=86 Identities=26% Similarity=0.293 Sum_probs=63.3
Q ss_pred eEEEEecCCCcHHHHHHHHhhccCceeecCCCC-------ceeEEEEEeeCCeEEEEECCCCCC---C-CChHHHHHHHH
Q 029512 94 EIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPG-------LTQTINFFKLGTKLCLVDLPGYGF---A-YAKEEVKDAWE 162 (192)
Q Consensus 94 ~i~lvG~~n~GKStlin~L~~~~~~~~~~~~~g-------~T~~~~~~~~~~~~~lvDtPG~~~---~-~~~~~~~~~~~ 162 (192)
.++|+|.||||||||||+|++. ....++..++ ||+..+.+.......|+|||||.. . ...+++...|.
T Consensus 207 i~~~vG~sgVGKSTLiN~Ll~~-~~~~t~~is~~~~rGrHTT~~~~l~~l~~~~~liDTPGir~~~l~~~~~~~l~~~F~ 285 (347)
T PRK12288 207 ISIFVGQSGVGKSSLINALLPE-AEILVGDVSDNSGLGQHTTTAARLYHFPHGGDLIDSPGVREFGLWHLEPEQVTQGFV 285 (347)
T ss_pred CEEEECCCCCCHHHHHHHhccc-cceeeccccCcCCCCcCceeeEEEEEecCCCEEEECCCCCcccCCCCCHHHHHHhhH
Confidence 6899999999999999999987 3345554443 788888888765667999999865 2 35577888998
Q ss_pred HHHhhhccCceeEEEEEEecCCce
Q 029512 163 ELVSISYRNFWSCTCFLIYIFYTN 186 (192)
Q Consensus 163 ~~~~l~~~~~~~~v~~vvD~s~~~ 186 (192)
+|..+.. -|..-||+|.+
T Consensus 286 ei~~~~~------~CrF~dC~H~~ 303 (347)
T PRK12288 286 EFRDYLG------TCKFRDCKHDD 303 (347)
T ss_pred HHHHHhc------CCCCCCCccCC
Confidence 8877421 24455666654
No 62
>cd01894 EngA1 EngA1 subfamily. This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.35 E-value=4.3e-12 Score=95.54 Aligned_cols=85 Identities=25% Similarity=0.243 Sum_probs=59.9
Q ss_pred EEEecCCCcHHHHHHHHhhccCceeecCCCCceeEEEEEe---eCCeEEEEECCCCCCCCChHHHHH-HHHHHHhhhccC
Q 029512 96 AFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFK---LGTKLCLVDLPGYGFAYAKEEVKD-AWEELVSISYRN 171 (192)
Q Consensus 96 ~lvG~~n~GKStlin~L~~~~~~~~~~~~~g~T~~~~~~~---~~~~~~lvDtPG~~~~~~~~~~~~-~~~~~~~l~~~~ 171 (192)
+++|.+|+|||||+|+|++. .....+..+++|++..... .+..+.++||||+..... .... .+... ....+
T Consensus 1 ~l~G~~~~GKssl~~~l~~~-~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~DtpG~~~~~~--~~~~~~~~~~--~~~~~ 75 (157)
T cd01894 1 AIVGRPNVGKSTLFNRLTGR-RDAIVEDTPGVTRDRIYGEAEWGGREFILIDTGGIEPDDE--GISKEIREQA--ELAIE 75 (157)
T ss_pred CccCCCCCCHHHHHHHHhCC-cEEeecCCCCceeCceeEEEEECCeEEEEEECCCCCCchh--HHHHHHHHHH--HHHHH
Confidence 47899999999999999987 4456777888887765433 367899999999876322 1111 11111 22335
Q ss_pred ceeEEEEEEecCCc
Q 029512 172 FWSCTCFLIYIFYT 185 (192)
Q Consensus 172 ~~~~v~~vvD~s~~ 185 (192)
.+|++++|+|++++
T Consensus 76 ~~d~ii~v~d~~~~ 89 (157)
T cd01894 76 EADVILFVVDGREG 89 (157)
T ss_pred hCCEEEEEEecccc
Confidence 68999999998764
No 63
>cd01896 DRG The developmentally regulated GTP-binding protein (DRG) subfamily is an uncharacterized member of the Obg family, an evolutionary branch of GTPase superfamily proteins. GTPases act as molecular switches regulating diverse cellular processes. DRG2 and DRG1 comprise the DRG subfamily in eukaryotes. In view of their widespread expression in various tissues and high conservation among distantly related species in eukaryotes and archaea, DRG proteins may regulate fundamental cellular processes. It is proposed that the DRG subfamily proteins play their physiological roles through RNA binding.
Probab=99.34 E-value=4.6e-12 Score=103.80 Aligned_cols=86 Identities=23% Similarity=0.168 Sum_probs=63.3
Q ss_pred eEEEEecCCCcHHHHHHHHhhccCceeecCCCCceeEEEEE---eeCCeEEEEECCCCCCCCC-hHHHHHHHHHHHhhhc
Q 029512 94 EIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFF---KLGTKLCLVDLPGYGFAYA-KEEVKDAWEELVSISY 169 (192)
Q Consensus 94 ~i~lvG~~n~GKStlin~L~~~~~~~~~~~~~g~T~~~~~~---~~~~~~~lvDtPG~~~~~~-~~~~~~~~~~~~~l~~ 169 (192)
+|+++|++|+|||||+|+|++.. ..+++.+++|.++... ..+..+.++||||+..... ...... .+ +..
T Consensus 2 ~v~lvG~~~~GKStLl~~Ltg~~--~~v~~~~~tT~~~~~g~~~~~~~~i~l~DtpG~~~~~~~~~~~~~---~~--l~~ 74 (233)
T cd01896 2 RVALVGFPSVGKSTLLSKLTNTK--SEVAAYEFTTLTCVPGVLEYKGAKIQLLDLPGIIEGAADGKGRGR---QV--IAV 74 (233)
T ss_pred EEEEECCCCCCHHHHHHHHHCCC--ccccCCCCccccceEEEEEECCeEEEEEECCCcccccccchhHHH---HH--HHh
Confidence 68999999999999999999974 5577888988776533 3478899999999865221 111111 11 344
Q ss_pred cCceeEEEEEEecCCce
Q 029512 170 RNFWSCTCFLIYIFYTN 186 (192)
Q Consensus 170 ~~~~~~v~~vvD~s~~~ 186 (192)
.+++|++++|+|+++++
T Consensus 75 ~~~ad~il~V~D~t~~~ 91 (233)
T cd01896 75 ARTADLILMVLDATKPE 91 (233)
T ss_pred hccCCEEEEEecCCcch
Confidence 67889999999997754
No 64
>PF04548 AIG1: AIG1 family; InterPro: IPR006703 This entry represents a domain found in Arabidopsis protein AIG1 which appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 (avrRpt2-induced gene) exhibits RPS2- and avrRpt2-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2 []. The domain is also apparently found in a number of mammalian proteins, for example the rat immune-associated nucleotide 4 protein. ; GO: 0005525 GTP binding; PDB: 3LXX_A 3BB4_A 3DEF_A 3BB3_A 2J3E_A 3V70_B 3BB1_A 1H65_B 2XTP_A 3P1J_C ....
Probab=99.33 E-value=5.9e-12 Score=101.65 Aligned_cols=89 Identities=20% Similarity=0.193 Sum_probs=55.6
Q ss_pred eEEEEecCCCcHHHHHHHHhhccCceeecCCCCceeEEEEEe---eCCeEEEEECCCCCCCCC-hHHHHHHHHHHHhhhc
Q 029512 94 EIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFK---LGTKLCLVDLPGYGFAYA-KEEVKDAWEELVSISY 169 (192)
Q Consensus 94 ~i~lvG~~n~GKStlin~L~~~~~~~~~~~~~g~T~~~~~~~---~~~~~~lvDtPG~~~~~~-~~~~~~~~~~~~~l~~ 169 (192)
+|+|+|.+|+||||++|+|+|...........++|+.++... .|..+.+||||||.++.. .+...+.+...+.+ .
T Consensus 2 ~IlllG~tGsGKSs~~N~ilg~~~f~~~~~~~~~t~~~~~~~~~~~g~~v~VIDTPGl~d~~~~~~~~~~~i~~~l~~-~ 80 (212)
T PF04548_consen 2 RILLLGKTGSGKSSLGNSILGKEVFKSGSSAKSVTQECQKYSGEVDGRQVTVIDTPGLFDSDGSDEEIIREIKRCLSL-C 80 (212)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSS-SS--TTTSS--SS-EEEEEEETTEEEEEEE--SSEETTEEHHHHHHHHHHHHHH-T
T ss_pred EEEEECCCCCCHHHHHHHHhcccceeeccccCCcccccceeeeeecceEEEEEeCCCCCCCcccHHHHHHHHHHHHHh-c
Confidence 789999999999999999999853222223445676665433 489999999999977543 34344444333322 2
Q ss_pred cCceeEEEEEEecC
Q 029512 170 RNFWSCTCFLIYIF 183 (192)
Q Consensus 170 ~~~~~~v~~vvD~s 183 (192)
....+++++|+...
T Consensus 81 ~~g~ha~llVi~~~ 94 (212)
T PF04548_consen 81 SPGPHAFLLVIPLG 94 (212)
T ss_dssp TT-ESEEEEEEETT
T ss_pred cCCCeEEEEEEecC
Confidence 45578888888765
No 65
>cd04163 Era Era subfamily. Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.
Probab=99.33 E-value=1.6e-11 Score=92.54 Aligned_cols=90 Identities=27% Similarity=0.194 Sum_probs=62.1
Q ss_pred CCeEEEEecCCCcHHHHHHHHhhccCceeecCCCCceeEEEEEe---eCCeEEEEECCCCCCCCChHHHHHHHHHHHhhh
Q 029512 92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFK---LGTKLCLVDLPGYGFAYAKEEVKDAWEELVSIS 168 (192)
Q Consensus 92 ~~~i~lvG~~n~GKStlin~L~~~~~~~~~~~~~g~T~~~~~~~---~~~~~~lvDtPG~~~~~~~~~~~~~~~~~~~l~ 168 (192)
..+|+++|.+|+|||||+|++++. ..+...+.+.+|+...... .+..+.++||||+........ ..+.... ..
T Consensus 3 ~~~i~~~G~~g~GKttl~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~--~~~~~~~-~~ 78 (168)
T cd04163 3 SGFVAIVGRPNVGKSTLLNALVGQ-KISIVSPKPQTTRNRIRGIYTDDDAQIIFVDTPGIHKPKKKLG--ERMVKAA-WS 78 (168)
T ss_pred eeEEEEECCCCCCHHHHHHHHhCC-ceEeccCCCCceeceEEEEEEcCCeEEEEEECCCCCcchHHHH--HHHHHHH-HH
Confidence 358999999999999999999997 5566666666776544322 246799999999875322111 1111111 23
Q ss_pred ccCceeEEEEEEecCCc
Q 029512 169 YRNFWSCTCFLIYIFYT 185 (192)
Q Consensus 169 ~~~~~~~v~~vvD~s~~ 185 (192)
....+|.+++++|++++
T Consensus 79 ~~~~~d~i~~v~d~~~~ 95 (168)
T cd04163 79 ALKDVDLVLFVVDASEP 95 (168)
T ss_pred HHHhCCEEEEEEECCCc
Confidence 34567999999999876
No 66
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.33 E-value=9.2e-12 Score=109.84 Aligned_cols=94 Identities=26% Similarity=0.226 Sum_probs=67.9
Q ss_pred CCCeEEEEecCCCcHHHHHHHHhhccCceeecCCCCceeEEEEE---eeCCeEEEEECCCCCCCCChHHHHHHHHHHHhh
Q 029512 91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFF---KLGTKLCLVDLPGYGFAYAKEEVKDAWEELVSI 167 (192)
Q Consensus 91 ~~~~i~lvG~~n~GKStlin~L~~~~~~~~~~~~~g~T~~~~~~---~~~~~~~lvDtPG~~~~~~~~~~~~~~~~~~~l 167 (192)
...+|+++|.+|+|||||+|+|++. ....+++.+|+|++.... ..+..+.+|||||+..........+.+.....+
T Consensus 171 ~~~~v~ivG~~~~GKSsLin~l~~~-~~~~~~~~~gtt~~~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~e~~~~~~~~ 249 (429)
T TIGR03594 171 GPIKIAIIGRPNVGKSTLVNALLGE-ERVIVSDIAGTTRDSIDIPFERNGKKYLLIDTAGIRRKGKVTEGVEKYSVLRTL 249 (429)
T ss_pred CceEEEEECCCCCCHHHHHHHHHCC-CeeecCCCCCceECcEeEEEEECCcEEEEEECCCccccccchhhHHHHHHHHHH
Confidence 3468999999999999999999997 456788899999876422 346789999999987533222112222222224
Q ss_pred hccCceeEEEEEEecCCc
Q 029512 168 SYRNFWSCTCFLIYIFYT 185 (192)
Q Consensus 168 ~~~~~~~~v~~vvD~s~~ 185 (192)
...+.+|++++|+|++++
T Consensus 250 ~~~~~ad~~ilV~D~~~~ 267 (429)
T TIGR03594 250 KAIERADVVLLVLDATEG 267 (429)
T ss_pred HHHHhCCEEEEEEECCCC
Confidence 455778999999999864
No 67
>cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1. Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to
Probab=99.32 E-value=2.1e-12 Score=99.24 Aligned_cols=82 Identities=22% Similarity=0.246 Sum_probs=58.0
Q ss_pred EEecCCCcHHHHHHHHhhccCceeecCCCCceeEEEEEe---e-CCeEEEEECCCCCCCCCh-HHHHHHHHHHHhhhccC
Q 029512 97 FAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFK---L-GTKLCLVDLPGYGFAYAK-EEVKDAWEELVSISYRN 171 (192)
Q Consensus 97 lvG~~n~GKStlin~L~~~~~~~~~~~~~g~T~~~~~~~---~-~~~~~lvDtPG~~~~~~~-~~~~~~~~~~~~l~~~~ 171 (192)
++|++|||||||+|+|++.. . .+++.+++|+++.... . +..+.++||||+...... +.+. ..+ +...+
T Consensus 1 iiG~~~~GKStll~~l~~~~-~-~~~~~~~~t~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~---~~~--~~~~~ 73 (176)
T cd01881 1 LVGLPNVGKSTLLNALTNAK-P-KVANYPFTTLEPNLGVVEVPDGARIQVADIPGLIEGASEGRGLG---NQF--LAHIR 73 (176)
T ss_pred CCCCCCCcHHHHHHHHhcCC-c-cccCCCceeecCcceEEEcCCCCeEEEEeccccchhhhcCCCcc---HHH--HHHHh
Confidence 57999999999999999973 3 5677888887765332 3 788999999998642111 1111 111 22334
Q ss_pred ceeEEEEEEecCCc
Q 029512 172 FWSCTCFLIYIFYT 185 (192)
Q Consensus 172 ~~~~v~~vvD~s~~ 185 (192)
.+|++++|+|++++
T Consensus 74 ~~d~ii~v~d~~~~ 87 (176)
T cd01881 74 RADAILHVVDASED 87 (176)
T ss_pred ccCEEEEEEeccCC
Confidence 58999999999876
No 68
>PRK12289 GTPase RsgA; Reviewed
Probab=99.32 E-value=5.9e-12 Score=108.93 Aligned_cols=89 Identities=25% Similarity=0.327 Sum_probs=64.2
Q ss_pred CeEEEEecCCCcHHHHHHHHhhccCceeecCCCC-------ceeEEEEEeeCCeEEEEECCCCCCC---CChHHHHHHHH
Q 029512 93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPG-------LTQTINFFKLGTKLCLVDLPGYGFA---YAKEEVKDAWE 162 (192)
Q Consensus 93 ~~i~lvG~~n~GKStlin~L~~~~~~~~~~~~~g-------~T~~~~~~~~~~~~~lvDtPG~~~~---~~~~~~~~~~~ 162 (192)
..++|+|+||||||||||+|++. ....++..++ ||++.+.+.......|+|||||... ...+++...|.
T Consensus 173 ki~v~iG~SgVGKSSLIN~L~~~-~~~~t~~vs~~~~rGrHTT~~~~l~~l~~g~~liDTPG~~~~~l~~~~~~l~~~F~ 251 (352)
T PRK12289 173 KITVVAGPSGVGKSSLINRLIPD-VELRVGKVSGKLGRGRHTTRHVELFELPNGGLLADTPGFNQPDLDCSPRELAHYFP 251 (352)
T ss_pred ceEEEEeCCCCCHHHHHHHHcCc-cccccccccCCCCCCCCcCceeEEEECCCCcEEEeCCCccccccccCHHHHHhhHH
Confidence 36899999999999999999987 3455666666 8999888877545589999999763 23466777777
Q ss_pred HHHhhhccCceeEEEEEEecCCce
Q 029512 163 ELVSISYRNFWSCTCFLIYIFYTN 186 (192)
Q Consensus 163 ~~~~l~~~~~~~~v~~vvD~s~~~ 186 (192)
++..+.. ..-|..-||.|.+
T Consensus 252 e~~~~~~----~~~CrF~dC~H~~ 271 (352)
T PRK12289 252 EARQRLA----QGNCQFNDCLHRD 271 (352)
T ss_pred HHHHhHh----hCceEccCCccCC
Confidence 7755211 1235666777654
No 69
>cd01879 FeoB Ferrous iron transport protein B (FeoB) subfamily. E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent.
Probab=99.31 E-value=7.1e-12 Score=94.69 Aligned_cols=85 Identities=22% Similarity=0.212 Sum_probs=58.2
Q ss_pred EEecCCCcHHHHHHHHhhccCceeecCCCCceeEEEEE---eeCCeEEEEECCCCCCCCChHHHHHHHHHHHhhhccCce
Q 029512 97 FAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFF---KLGTKLCLVDLPGYGFAYAKEEVKDAWEELVSISYRNFW 173 (192)
Q Consensus 97 lvG~~n~GKStlin~L~~~~~~~~~~~~~g~T~~~~~~---~~~~~~~lvDtPG~~~~~~~~~~~~~~~~~~~l~~~~~~ 173 (192)
|+|.+|+|||||+|++++.. ..++..+++|.+.... ..+..+.+|||||+............+..+ +.. ..+
T Consensus 1 l~G~~~~GKssl~~~~~~~~--~~~~~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~--~~~-~~~ 75 (158)
T cd01879 1 LVGNPNVGKTTLFNALTGAR--QKVGNWPGVTVEKKEGRFKLGGKEIEIVDLPGTYSLSPYSEDEKVARDF--LLG-EKP 75 (158)
T ss_pred CCCCCCCCHHHHHHHHhcCc--ccccCCCCcccccceEEEeeCCeEEEEEECCCccccCCCChhHHHHHHH--hcC-CCC
Confidence 57999999999999999973 5667778888776422 236789999999986422111111112222 222 678
Q ss_pred eEEEEEEecCCce
Q 029512 174 SCTCFLIYIFYTN 186 (192)
Q Consensus 174 ~~v~~vvD~s~~~ 186 (192)
|++++|+|++.++
T Consensus 76 d~vi~v~d~~~~~ 88 (158)
T cd01879 76 DLIVNVVDATNLE 88 (158)
T ss_pred cEEEEEeeCCcch
Confidence 9999999998754
No 70
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=99.30 E-value=1.4e-11 Score=115.44 Aligned_cols=94 Identities=26% Similarity=0.233 Sum_probs=68.3
Q ss_pred CCCeEEEEecCCCcHHHHHHHHhhccCceeecCCCCceeEEE---EEeeCCeEEEEECCCCCCCCChHHHHHHHHHHHhh
Q 029512 91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTIN---FFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVSI 167 (192)
Q Consensus 91 ~~~~i~lvG~~n~GKStlin~L~~~~~~~~~~~~~g~T~~~~---~~~~~~~~~lvDtPG~~~~~~~~~~~~~~~~~~~l 167 (192)
..++|+++|.+|||||||+|+|++. ....+++.+|+|++.. +...+..+.+|||||+..........+.+..+...
T Consensus 449 ~~~kI~ivG~~nvGKSSLin~l~~~-~~~~v~~~~gtT~d~~~~~~~~~~~~~~liDTaG~~~~~~~~~~~e~~~~~r~~ 527 (712)
T PRK09518 449 GLRRVALVGRPNVGKSSLLNQLTHE-ERAVVNDLAGTTRDPVDEIVEIDGEDWLFIDTAGIKRRQHKLTGAEYYSSLRTQ 527 (712)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCc-cccccCCCCCCCcCcceeEEEECCCEEEEEECCCcccCcccchhHHHHHHHHHH
Confidence 4579999999999999999999997 4567788999998864 23357789999999986532221111222222224
Q ss_pred hccCceeEEEEEEecCCc
Q 029512 168 SYRNFWSCTCFLIYIFYT 185 (192)
Q Consensus 168 ~~~~~~~~v~~vvD~s~~ 185 (192)
...+.+|++++|+|++..
T Consensus 528 ~~i~~advvilViDat~~ 545 (712)
T PRK09518 528 AAIERSELALFLFDASQP 545 (712)
T ss_pred HHhhcCCEEEEEEECCCC
Confidence 445778999999999765
No 71
>KOG2485 consensus Conserved ATP/GTP binding protein [General function prediction only]
Probab=99.29 E-value=4.3e-12 Score=106.52 Aligned_cols=133 Identities=24% Similarity=0.278 Sum_probs=85.5
Q ss_pred ccCCCCcccchhhhhhcCCCChhhhhhccceeecCCCCCCCCCCChHHHHHHHHHh--------------hhhhHHHHHh
Q 029512 15 AIQPSPSILSFVEDNLLGRRRPIELRRAGYNIELSAPLDNIPFSTSSERERIEENI--------------FRNKLEFFAA 80 (192)
Q Consensus 15 ~~~~~~~~l~~~~~~l~~r~~li~~~~~~~~~~l~~~~e~i~~~~~~~~~~i~~~~--------------~~~~~~~~~~ 80 (192)
+=-|+++.++.|++.+..+.+++.++++++. .+.+........+.+....-+ ....+..+..
T Consensus 56 aRiPLssrn~~~~~~~~~k~riiVlNK~DLa----d~~~~k~~iq~~~~~~~~~~~~~~c~~~~~~~v~~l~~il~~~~~ 131 (335)
T KOG2485|consen 56 ARIPLSSRNELFQDFLPPKPRIIVLNKMDLA----DPKEQKKIIQYLEWQNLESYIKLDCNKDCNKQVSPLLKILTILSE 131 (335)
T ss_pred cccCCccccHHHHHhcCCCceEEEEeccccc----CchhhhHHHHHHHhhcccchhhhhhhhhhhhccccHHHHHHHHHH
Confidence 4458999999999999999999999998433 322110000000000000000 0001111111
Q ss_pred cccccCCCCCCCCeEEEEecCCCcHHHHHHHHhhc----cCceeecCCCCceeEEEE---EeeCCeEEEEECCCCCCC
Q 029512 81 AKVSSSFPAPDLPEIAFAGRSNVGKSSMLNALTRQ----WGVVRTSDKPGLTQTINF---FKLGTKLCLVDLPGYGFA 151 (192)
Q Consensus 81 ~~~~~~~~~~~~~~i~lvG~~n~GKStlin~L~~~----~~~~~~~~~~g~T~~~~~---~~~~~~~~lvDtPG~~~~ 151 (192)
...+..+..+....++++|-||+|||||||++... .+.+.++..||+|+.+.. +...+.++++||||+..+
T Consensus 132 ~l~r~irt~~~~~~vmVvGvPNVGKSsLINa~r~~~Lrk~k~a~vG~~pGVT~~V~~~iri~~rp~vy~iDTPGil~P 209 (335)
T KOG2485|consen 132 ELVRFIRTLNSEYNVMVVGVPNVGKSSLINALRNVHLRKKKAARVGAEPGVTRRVSERIRISHRPPVYLIDTPGILVP 209 (335)
T ss_pred HHHHhhcccCCceeEEEEcCCCCChHHHHHHHHHHHhhhccceeccCCCCceeeehhheEeccCCceEEecCCCcCCC
Confidence 12223333456789999999999999999999753 257899999999999864 335788999999999775
No 72
>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH. This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.
Probab=99.29 E-value=1.1e-11 Score=107.56 Aligned_cols=59 Identities=36% Similarity=0.431 Sum_probs=51.7
Q ss_pred CeEEEEecCCCcHHHHHHHHhhcc----CceeecCCCCceeEEEEEeeCCeEEEEECCCCCCC
Q 029512 93 PEIAFAGRSNVGKSSMLNALTRQW----GVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFA 151 (192)
Q Consensus 93 ~~i~lvG~~n~GKStlin~L~~~~----~~~~~~~~~g~T~~~~~~~~~~~~~lvDtPG~~~~ 151 (192)
..++++|.||||||||+|+|++.. ....++..||+|++...+..+..+.++||||+..+
T Consensus 155 ~~v~~vG~~nvGKStliN~l~~~~~~~~~~~~~s~~pgtT~~~~~~~~~~~~~l~DtPG~~~~ 217 (360)
T TIGR03597 155 KDVYVVGVTNVGKSSLINKLLKQNNGDKDVITTSPFPGTTLDLIEIPLDDGHSLYDTPGIINS 217 (360)
T ss_pred CeEEEECCCCCCHHHHHHHHHhhccCCcceeeecCCCCeEeeEEEEEeCCCCEEEECCCCCCh
Confidence 589999999999999999999853 23678999999999998888778899999999863
No 73
>TIGR00991 3a0901s02IAP34 GTP-binding protein (Chloroplast Envelope Protein Translocase).
Probab=99.28 E-value=3.3e-11 Score=102.20 Aligned_cols=88 Identities=17% Similarity=0.135 Sum_probs=58.4
Q ss_pred CCCeEEEEecCCCcHHHHHHHHhhccCceeecCCCCceeEEEE---EeeCCeEEEEECCCCCCCCChHHHHHHHHHHHhh
Q 029512 91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINF---FKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVSI 167 (192)
Q Consensus 91 ~~~~i~lvG~~n~GKStlin~L~~~~~~~~~~~~~g~T~~~~~---~~~~~~~~lvDtPG~~~~~~~~~~~~~~~~~~~l 167 (192)
...+|+++|.+|+||||++|+|+|. ..+.++...++|..... ...|..+.+|||||+.+..... .+....+..+
T Consensus 37 ~~~rIllvGktGVGKSSliNsIlG~-~v~~vs~f~s~t~~~~~~~~~~~G~~l~VIDTPGL~d~~~~~--e~~~~~ik~~ 113 (313)
T TIGR00991 37 SSLTILVMGKGGVGKSSTVNSIIGE-RIATVSAFQSEGLRPMMVSRTRAGFTLNIIDTPGLIEGGYIN--DQAVNIIKRF 113 (313)
T ss_pred cceEEEEECCCCCCHHHHHHHHhCC-CcccccCCCCcceeEEEEEEEECCeEEEEEECCCCCchHHHH--HHHHHHHHHH
Confidence 4679999999999999999999998 55566666665544332 2357899999999998642111 1111122222
Q ss_pred hccCceeEEEEEEe
Q 029512 168 SYRNFWSCTCFLIY 181 (192)
Q Consensus 168 ~~~~~~~~v~~vvD 181 (192)
......|++++|.+
T Consensus 114 l~~~g~DvVLyV~r 127 (313)
T TIGR00991 114 LLGKTIDVLLYVDR 127 (313)
T ss_pred hhcCCCCEEEEEec
Confidence 22346788888843
No 74
>TIGR00157 ribosome small subunit-dependent GTPase A. The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).
Probab=99.28 E-value=6.9e-12 Score=103.55 Aligned_cols=87 Identities=24% Similarity=0.322 Sum_probs=61.2
Q ss_pred CCeEEEEecCCCcHHHHHHHHhhccCceeecC-------CCCceeEEEEEeeCCeEEEEECCCCCC----CCChHHHHHH
Q 029512 92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSD-------KPGLTQTINFFKLGTKLCLVDLPGYGF----AYAKEEVKDA 160 (192)
Q Consensus 92 ~~~i~lvG~~n~GKStlin~L~~~~~~~~~~~-------~~g~T~~~~~~~~~~~~~lvDtPG~~~----~~~~~~~~~~ 160 (192)
...++++|+||||||||+|+|.+.. ...++. ..+||++.+.+..+ ...|+|||||.. ....+++...
T Consensus 120 ~~~~~~~G~sgvGKStLiN~L~~~~-~~~t~~i~~~~~~G~hTT~~~~l~~l~-~~~liDtPG~~~~~l~~~~~~~~~~~ 197 (245)
T TIGR00157 120 NRISVFAGQSGVGKSSLINALDPSV-KQQVNDISSKLGLGKHTTTHVELFHFH-GGLIADTPGFNEFGLWHLEPEQLTQG 197 (245)
T ss_pred CCEEEEECCCCCCHHHHHHHHhhhh-hccccceeccCCCCCCcCCceEEEEcC-CcEEEeCCCccccCCCCCCHHHHHHh
Confidence 3588999999999999999999863 222222 23488888877763 459999999965 3445778888
Q ss_pred HHHHHhhhccCceeEEEEEEecCCce
Q 029512 161 WEELVSISYRNFWSCTCFLIYIFYTN 186 (192)
Q Consensus 161 ~~~~~~l~~~~~~~~v~~vvD~s~~~ 186 (192)
|.++..+.. -|..-||+|.+
T Consensus 198 f~e~~~~~~------~C~f~~C~H~~ 217 (245)
T TIGR00157 198 FVEFRDYLG------ECKFRDCLHQS 217 (245)
T ss_pred CHHHHHHhC------CCCCCCCccCC
Confidence 888866322 14445565543
No 75
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=99.28 E-value=3.4e-11 Score=112.90 Aligned_cols=90 Identities=23% Similarity=0.313 Sum_probs=66.1
Q ss_pred CCCeEEEEecCCCcHHHHHHHHhhccCceeecCCCCceeEEEEEe---eCCeEEEEECCCCCCCCChHHHHHHHHHHHhh
Q 029512 91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFK---LGTKLCLVDLPGYGFAYAKEEVKDAWEELVSI 167 (192)
Q Consensus 91 ~~~~i~lvG~~n~GKStlin~L~~~~~~~~~~~~~g~T~~~~~~~---~~~~~~lvDtPG~~~~~~~~~~~~~~~~~~~l 167 (192)
..++|+++|++|||||||+|+|++. ..+.+++.+|+|++..... .+..+.+|||||+..... .+...+.... .
T Consensus 274 ~~~~V~IvG~~nvGKSSL~n~l~~~-~~~iv~~~pGvT~d~~~~~~~~~~~~~~liDT~G~~~~~~--~~~~~~~~~~-~ 349 (712)
T PRK09518 274 AVGVVAIVGRPNVGKSTLVNRILGR-REAVVEDTPGVTRDRVSYDAEWAGTDFKLVDTGGWEADVE--GIDSAIASQA-Q 349 (712)
T ss_pred cCcEEEEECCCCCCHHHHHHHHhCC-CceeecCCCCeeEEEEEEEEEECCEEEEEEeCCCcCCCCc--cHHHHHHHHH-H
Confidence 4578999999999999999999997 5678899999999876544 267899999999864211 1111111111 2
Q ss_pred hccCceeEEEEEEecCC
Q 029512 168 SYRNFWSCTCFLIYIFY 184 (192)
Q Consensus 168 ~~~~~~~~v~~vvD~s~ 184 (192)
...+.+|++++|+|++.
T Consensus 350 ~~~~~aD~iL~VvDa~~ 366 (712)
T PRK09518 350 IAVSLADAVVFVVDGQV 366 (712)
T ss_pred HHHHhCCEEEEEEECCC
Confidence 23457899999999975
No 76
>PRK09554 feoB ferrous iron transport protein B; Reviewed
Probab=99.27 E-value=2e-11 Score=115.01 Aligned_cols=89 Identities=19% Similarity=0.166 Sum_probs=64.0
Q ss_pred CeEEEEecCCCcHHHHHHHHhhccCceeecCCCCceeEEEEEe---eCCeEEEEECCCCCCCCC---hHHHHHHH-HHHH
Q 029512 93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFK---LGTKLCLVDLPGYGFAYA---KEEVKDAW-EELV 165 (192)
Q Consensus 93 ~~i~lvG~~n~GKStlin~L~~~~~~~~~~~~~g~T~~~~~~~---~~~~~~lvDtPG~~~~~~---~~~~~~~~-~~~~ 165 (192)
.+|+++|++|||||||+|+|+|.. ..+++.+|+|.+..... .+.++.++||||..+-.. .....+.+ ..+
T Consensus 4 ~~IaLvG~pNvGKSTLfN~Ltg~~--~~vgn~pGvTve~k~g~~~~~~~~i~lvDtPG~ysl~~~~~~~s~~E~i~~~~- 80 (772)
T PRK09554 4 LTIGLIGNPNSGKTTLFNQLTGAR--QRVGNWAGVTVERKEGQFSTTDHQVTLVDLPGTYSLTTISSQTSLDEQIACHY- 80 (772)
T ss_pred eEEEEECCCCCCHHHHHHHHhCCC--CccCCCCCceEeeEEEEEEcCceEEEEEECCCccccccccccccHHHHHHHHH-
Confidence 589999999999999999999974 57899999999875433 367899999999865211 11111111 111
Q ss_pred hhhccCceeEEEEEEecCCce
Q 029512 166 SISYRNFWSCTCFLIYIFYTN 186 (192)
Q Consensus 166 ~l~~~~~~~~v~~vvD~s~~~ 186 (192)
.....+|.+++|+|++..+
T Consensus 81 --l~~~~aD~vI~VvDat~le 99 (772)
T PRK09554 81 --ILSGDADLLINVVDASNLE 99 (772)
T ss_pred --HhccCCCEEEEEecCCcch
Confidence 1234679999999998644
No 77
>cd01856 YlqF YlqF. Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.
Probab=99.26 E-value=2.2e-11 Score=94.95 Aligned_cols=59 Identities=34% Similarity=0.582 Sum_probs=51.5
Q ss_pred CCCCeEEEEecCCCcHHHHHHHHhhccCceeecCCCCceeEEEEEeeCCeEEEEECCCCC
Q 029512 90 PDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYG 149 (192)
Q Consensus 90 ~~~~~i~lvG~~n~GKStlin~L~~~~~~~~~~~~~g~T~~~~~~~~~~~~~lvDtPG~~ 149 (192)
...++++++|.+|+|||||+|+|++. ....++..+|+|++.+.+..+..+.++||||+.
T Consensus 113 ~~~~~~~~~G~~~vGKstlin~l~~~-~~~~~~~~~~~T~~~~~~~~~~~~~~iDtpG~~ 171 (171)
T cd01856 113 PRGIRAMVVGIPNVGKSTLINRLRGK-KVAKVGNKPGVTKGIQWIKISPGIYLLDTPGIL 171 (171)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHhCC-CceeecCCCCEEeeeEEEEecCCEEEEECCCCC
Confidence 34568999999999999999999997 456788899999999887777889999999973
No 78
>COG1162 Predicted GTPases [General function prediction only]
Probab=99.25 E-value=1.2e-11 Score=104.12 Aligned_cols=89 Identities=24% Similarity=0.332 Sum_probs=64.7
Q ss_pred CCeEEEEecCCCcHHHHHHHHhhccC--ceeecC----CCCceeEEEEEeeCCeEEEEECCCCCC----CCChHHHHHHH
Q 029512 92 LPEIAFAGRSNVGKSSMLNALTRQWG--VVRTSD----KPGLTQTINFFKLGTKLCLVDLPGYGF----AYAKEEVKDAW 161 (192)
Q Consensus 92 ~~~i~lvG~~n~GKStlin~L~~~~~--~~~~~~----~~g~T~~~~~~~~~~~~~lvDtPG~~~----~~~~~~~~~~~ 161 (192)
....+++|+||||||||+|+|.+... ...++. .-.||++...+.....-.|+|||||.. ....+.+...|
T Consensus 164 ~~~svl~GqSGVGKSSLiN~L~p~~~~~t~eIS~~~~rGkHTTt~~~l~~l~~gG~iiDTPGf~~~~l~~~~~e~l~~~F 243 (301)
T COG1162 164 GKITVLLGQSGVGKSTLINALLPELNQKTGEISEKLGRGRHTTTHVELFPLPGGGWIIDTPGFRSLGLAHLEPEDLVQAF 243 (301)
T ss_pred CCeEEEECCCCCcHHHHHHhhCchhhhhhhhhcccCCCCCCccceEEEEEcCCCCEEEeCCCCCccCcccCCHHHHHHHh
Confidence 44889999999999999999997521 222222 224888888888877779999999854 46778888898
Q ss_pred HHHHhhhccCceeEEEEEEecCCce
Q 029512 162 EELVSISYRNFWSCTCFLIYIFYTN 186 (192)
Q Consensus 162 ~~~~~l~~~~~~~~v~~vvD~s~~~ 186 (192)
.++.++ ..-|..-||+|.+
T Consensus 244 ~ef~~~------~~~CkFr~C~H~~ 262 (301)
T COG1162 244 PEFAEL------ARQCKFRDCTHTH 262 (301)
T ss_pred HHHHHH------hcCCCCCCCCCCC
Confidence 888763 2235555666543
No 79
>TIGR00092 GTP-binding protein YchF. This predicted GTP-binding protein is found in a single copy in every complete bacterial genome, and is found in Eukaryotes. A more distantly related protein, separated from this model, is found in the archaea. It is known to bind GTP and double-stranded nucleic acid. It is suggested to belong to a nucleoprotein complex and act as a translation factor.
Probab=99.23 E-value=1.3e-11 Score=106.98 Aligned_cols=92 Identities=21% Similarity=0.146 Sum_probs=69.9
Q ss_pred CeEEEEecCCCcHHHHHHHHhhccCceeecCCCCceeEEEEEee---C-----------------CeEEEEECCCCCC-C
Q 029512 93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKL---G-----------------TKLCLVDLPGYGF-A 151 (192)
Q Consensus 93 ~~i~lvG~~n~GKStlin~L~~~~~~~~~~~~~g~T~~~~~~~~---~-----------------~~~~lvDtPG~~~-~ 151 (192)
.+++|||.||+|||||+|+|++.. ...++++|++|.+++.... + ..+.++|.||+.. +
T Consensus 3 lk~GivGlPn~GKSTlfnaLT~~~-~~~~a~ypftTi~p~~g~v~v~d~r~d~L~~~~~~~~~~~a~i~~~DiaGlv~gA 81 (368)
T TIGR00092 3 LSGGIVGLPNVGKSTLFAATTNLL-GNEAANPPFTTIEPNAGVVNPSDPRLDLLAIYIKPEKVPPTTTEFVDIAGLVGGA 81 (368)
T ss_pred ceEEEECCCCCChHHHHHHHhCCC-ccccCCCCCCCCCCceeEEEechhHHHHHHHHhCCcCcCCceEEEEeccccccch
Confidence 589999999999999999999984 3378899999988764321 1 3689999999876 3
Q ss_pred CChHHHHHHHHHHHhhhccCceeEEEEEEecCCceEEEE
Q 029512 152 YAKEEVKDAWEELVSISYRNFWSCTCFLIYIFYTNVIIL 190 (192)
Q Consensus 152 ~~~~~~~~~~~~~~~l~~~~~~~~v~~vvD~s~~~~~~~ 190 (192)
....++.+.| |.+.+++|.+++|+|++..+.+.|
T Consensus 82 s~g~Glgn~f-----L~~ir~~d~l~hVvr~f~d~~i~H 115 (368)
T TIGR00092 82 SKGEGLGNQF-----LANIREVDIIQHVVRCFEDDIIHH 115 (368)
T ss_pred hcccCcchHH-----HHHHHhCCEEEEEEeCCCCcccCc
Confidence 3333444444 667788999999999987655543
No 80
>cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily. IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s.
Probab=99.22 E-value=1.1e-10 Score=89.17 Aligned_cols=80 Identities=18% Similarity=0.293 Sum_probs=55.0
Q ss_pred CeEEEEecCCCcHHHHHHHHhhccCceeecCCCCceeEEEEEe------eCCeEEEEECCCCCCCCChHHHHHHHHHHHh
Q 029512 93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFK------LGTKLCLVDLPGYGFAYAKEEVKDAWEELVS 166 (192)
Q Consensus 93 ~~i~lvG~~n~GKStlin~L~~~~~~~~~~~~~g~T~~~~~~~------~~~~~~lvDtPG~~~~~~~~~~~~~~~~~~~ 166 (192)
|.|+++|.+|+|||||+|+|++.. .. ....+++|++..... .+..+.++||||... ....+..
T Consensus 1 ~~i~iiG~~~~GKtsli~~l~~~~-~~-~~~~~~~t~~~~~~~~~~~~~~~~~~~iiDtpG~~~------~~~~~~~--- 69 (168)
T cd01887 1 PVVTVMGHVDHGKTTLLDKIRKTN-VA-AGEAGGITQHIGAFEVPAEVLKIPGITFIDTPGHEA------FTNMRAR--- 69 (168)
T ss_pred CEEEEEecCCCCHHHHHHHHHhcc-cc-cccCCCeEEeeccEEEecccCCcceEEEEeCCCcHH------HHHHHHH---
Confidence 579999999999999999999863 22 234456776654222 156899999999532 1122221
Q ss_pred hhccCceeEEEEEEecCCc
Q 029512 167 ISYRNFWSCTCFLIYIFYT 185 (192)
Q Consensus 167 l~~~~~~~~v~~vvD~s~~ 185 (192)
....+|++++|+|+++.
T Consensus 70 --~~~~~d~il~v~d~~~~ 86 (168)
T cd01887 70 --GASLTDIAILVVAADDG 86 (168)
T ss_pred --HHhhcCEEEEEEECCCC
Confidence 12467999999999764
No 81
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=99.22 E-value=6.8e-12 Score=97.22 Aligned_cols=74 Identities=27% Similarity=0.333 Sum_probs=49.5
Q ss_pred CeEEEEecCCCcHHHHHHHHhhccC--ceeec----CCCCceeEEEEEeeCCeEEEEECCCCCC----CCChHHHHHHHH
Q 029512 93 PEIAFAGRSNVGKSSMLNALTRQWG--VVRTS----DKPGLTQTINFFKLGTKLCLVDLPGYGF----AYAKEEVKDAWE 162 (192)
Q Consensus 93 ~~i~lvG~~n~GKStlin~L~~~~~--~~~~~----~~~g~T~~~~~~~~~~~~~lvDtPG~~~----~~~~~~~~~~~~ 162 (192)
..++++|+||||||||+|+|.+... ...++ ....+|+..+.+.......|+|||||.. ....+.+...|.
T Consensus 36 k~~vl~G~SGvGKSSLiN~L~~~~~~~t~~is~~~~rGkHTTt~~~l~~l~~g~~iIDTPGf~~~~l~~~~~~~l~~~F~ 115 (161)
T PF03193_consen 36 KTSVLLGQSGVGKSSLINALLPEAKQKTGEISEKTGRGKHTTTHRELFPLPDGGYIIDTPGFRSFGLWHIDPEELAQYFP 115 (161)
T ss_dssp SEEEEECSTTSSHHHHHHHHHTSS----S--------------SEEEEEETTSEEEECSHHHHT--GCCS-HHHHHHCSG
T ss_pred CEEEEECCCCCCHHHHHHHHHhhcchhhhhhhcccCCCcccCCCeeEEecCCCcEEEECCCCCccccccCCHHHHHHHHH
Confidence 5899999999999999999998732 11222 2224788888888878889999999864 245566666666
Q ss_pred HHHh
Q 029512 163 ELVS 166 (192)
Q Consensus 163 ~~~~ 166 (192)
++..
T Consensus 116 e~~~ 119 (161)
T PF03193_consen 116 EFRP 119 (161)
T ss_dssp GGHH
T ss_pred Hhcc
Confidence 6655
No 82
>TIGR00993 3a0901s04IAP86 chloroplast protein import component Toc86/159, G and M domains. The long precursor of the 86K protein originally described is proposed to have three domains. The N-terminal A-domain is acidic, repetitive, weakly conserved, readily removed by proteolysis during chloroplast isolation, and not required for protein translocation. The other domains are designated G (GTPase) and M (membrane anchor); this family includes most of the G domain and all of M.
Probab=99.22 E-value=1.8e-10 Score=105.66 Aligned_cols=89 Identities=19% Similarity=0.218 Sum_probs=57.4
Q ss_pred CeEEEEecCCCcHHHHHHHHhhccCceeecCC-CCceeEEEEE--eeCCeEEEEECCCCCCCCChH-HHHHHHHHHHhhh
Q 029512 93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDK-PGLTQTINFF--KLGTKLCLVDLPGYGFAYAKE-EVKDAWEELVSIS 168 (192)
Q Consensus 93 ~~i~lvG~~n~GKStlin~L~~~~~~~~~~~~-~g~T~~~~~~--~~~~~~~lvDtPG~~~~~~~~-~~~~~~~~~~~l~ 168 (192)
.+|+++|.||+||||++|+|+|. ....++.. +++|+..... ..+..+.+|||||+.++...+ .....+..+..+-
T Consensus 119 lrIvLVGKTGVGKSSLINSILGe-kvf~vss~~~~TTr~~ei~~~idG~~L~VIDTPGL~dt~~dq~~neeILk~Ik~~L 197 (763)
T TIGR00993 119 LNILVLGKSGVGKSATINSIFGE-VKFSTDAFGMGTTSVQEIEGLVQGVKIRVIDTPGLKSSASDQSKNEKILSSVKKFI 197 (763)
T ss_pred eEEEEECCCCCCHHHHHHHHhcc-ccccccCCCCCceEEEEEEEEECCceEEEEECCCCCccccchHHHHHHHHHHHHHH
Confidence 58999999999999999999998 34445544 4555533322 247889999999998753322 2223333333322
Q ss_pred ccCceeEEEEEEec
Q 029512 169 YRNFWSCTCFLIYI 182 (192)
Q Consensus 169 ~~~~~~~v~~vvD~ 182 (192)
....++++++|...
T Consensus 198 sk~gpDVVLlV~RL 211 (763)
T TIGR00993 198 KKNPPDIVLYVDRL 211 (763)
T ss_pred hcCCCCEEEEEEeC
Confidence 22346777777653
No 83
>cd04171 SelB SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo
Probab=99.22 E-value=1e-10 Score=88.69 Aligned_cols=79 Identities=23% Similarity=0.300 Sum_probs=53.3
Q ss_pred eEEEEecCCCcHHHHHHHHhhccCceee--cCCCCceeEEEEEe---e-CCeEEEEECCCCCCCCChHHHHHHHHHHHhh
Q 029512 94 EIAFAGRSNVGKSSMLNALTRQWGVVRT--SDKPGLTQTINFFK---L-GTKLCLVDLPGYGFAYAKEEVKDAWEELVSI 167 (192)
Q Consensus 94 ~i~lvG~~n~GKStlin~L~~~~~~~~~--~~~~g~T~~~~~~~---~-~~~~~lvDtPG~~~~~~~~~~~~~~~~~~~l 167 (192)
.|+++|++|||||||+|+|++.. .... ...+++|.+..+.. . +..+.+|||||.. ... ..+ .
T Consensus 2 ~i~i~G~~~~GKssl~~~l~~~~-~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~DtpG~~------~~~---~~~--~ 69 (164)
T cd04171 2 IIGTAGHIDHGKTTLIKALTGIE-TDRLPEEKKRGITIDLGFAYLDLPSGKRLGFIDVPGHE------KFI---KNM--L 69 (164)
T ss_pred EEEEEecCCCCHHHHHHHHhCcc-cccchhhhccCceEEeeeEEEEecCCcEEEEEECCChH------HHH---HHH--H
Confidence 68999999999999999999752 1111 22346666654322 2 6789999999952 111 111 2
Q ss_pred hccCceeEEEEEEecCC
Q 029512 168 SYRNFWSCTCFLIYIFY 184 (192)
Q Consensus 168 ~~~~~~~~v~~vvD~s~ 184 (192)
.....+|++++|+|+++
T Consensus 70 ~~~~~ad~ii~V~d~~~ 86 (164)
T cd04171 70 AGAGGIDLVLLVVAADE 86 (164)
T ss_pred hhhhcCCEEEEEEECCC
Confidence 23457899999999875
No 84
>PRK13796 GTPase YqeH; Provisional
Probab=99.21 E-value=2.5e-11 Score=105.67 Aligned_cols=59 Identities=31% Similarity=0.380 Sum_probs=50.1
Q ss_pred CCeEEEEecCCCcHHHHHHHHhhcc----CceeecCCCCceeEEEEEeeCCeEEEEECCCCCC
Q 029512 92 LPEIAFAGRSNVGKSSMLNALTRQW----GVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGF 150 (192)
Q Consensus 92 ~~~i~lvG~~n~GKStlin~L~~~~----~~~~~~~~~g~T~~~~~~~~~~~~~lvDtPG~~~ 150 (192)
...++++|.||||||||||+|++.. ....++..||+|++...+..+....++||||+..
T Consensus 160 ~~~v~vvG~~NvGKSTLiN~L~~~~~~~~~~~~~s~~pGTT~~~~~~~l~~~~~l~DTPGi~~ 222 (365)
T PRK13796 160 GRDVYVVGVTNVGKSTLINRIIKEITGEKDVITTSRFPGTTLDKIEIPLDDGSFLYDTPGIIH 222 (365)
T ss_pred CCeEEEEcCCCCcHHHHHHHHHhhccCccceEEecCCCCccceeEEEEcCCCcEEEECCCccc
Confidence 3489999999999999999999642 2456889999999999888877789999999964
No 85
>cd04157 Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A
Probab=99.18 E-value=1.7e-10 Score=87.50 Aligned_cols=81 Identities=21% Similarity=0.235 Sum_probs=55.0
Q ss_pred eEEEEecCCCcHHHHHHHHhhcc-CceeecCCCCceeEEEEEeeCCeEEEEECCCCCCCCChHHHHHHHHHHHhhhccCc
Q 029512 94 EIAFAGRSNVGKSSMLNALTRQW-GVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVSISYRNF 172 (192)
Q Consensus 94 ~i~lvG~~n~GKStlin~L~~~~-~~~~~~~~~g~T~~~~~~~~~~~~~lvDtPG~~~~~~~~~~~~~~~~~~~l~~~~~ 172 (192)
+|+++|.+|||||||+++|++.. ......+..|.+... +...+..+.+|||||... ....|..+ .+.
T Consensus 1 ~i~~vG~~~~GKTsl~~~l~~~~~~~~~~~~t~g~~~~~-~~~~~~~~~l~Dt~G~~~------~~~~~~~~-----~~~ 68 (162)
T cd04157 1 NILVVGLDNSGKTTIINQLKPENAQSQIIVPTVGFNVES-FEKGNLSFTAFDMSGQGK------YRGLWEHY-----YKN 68 (162)
T ss_pred CEEEECCCCCCHHHHHHHHcccCCCcceecCccccceEE-EEECCEEEEEEECCCCHh------hHHHHHHH-----Hcc
Confidence 47899999999999999999863 123334445544332 223467799999999532 22334333 246
Q ss_pred eeEEEEEEecCCce
Q 029512 173 WSCTCFLIYIFYTN 186 (192)
Q Consensus 173 ~~~v~~vvD~s~~~ 186 (192)
+|++++|+|++++.
T Consensus 69 ~d~ii~v~D~~~~~ 82 (162)
T cd04157 69 IQGIIFVIDSSDRL 82 (162)
T ss_pred CCEEEEEEeCCcHH
Confidence 89999999998753
No 86
>cd04156 ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h
Probab=99.18 E-value=1.6e-10 Score=87.82 Aligned_cols=81 Identities=16% Similarity=0.222 Sum_probs=53.5
Q ss_pred eEEEEecCCCcHHHHHHHHhhccCceeecCCCCceeEEEEEeeCCeEEEEECCCCCCCCChHHHHHHHHHHHhhhccCce
Q 029512 94 EIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVSISYRNFW 173 (192)
Q Consensus 94 ~i~lvG~~n~GKStlin~L~~~~~~~~~~~~~g~T~~~~~~~~~~~~~lvDtPG~~~~~~~~~~~~~~~~~~~l~~~~~~ 173 (192)
+|+++|.+|||||||+|++++.. .....+..+.+...........+.++||||.. .....|..+ .+.+
T Consensus 1 ~i~i~G~~~~GKTsl~~~~~~~~-~~~~~~t~~~~~~~~~~~~~~~l~i~D~~G~~------~~~~~~~~~-----~~~~ 68 (160)
T cd04156 1 QVLLLGLDSAGKSTLLYKLKHAE-LVTTIPTVGFNVEMLQLEKHLSLTVWDVGGQE------KMRTVWKCY-----LENT 68 (160)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCC-cccccCccCcceEEEEeCCceEEEEEECCCCH------hHHHHHHHH-----hccC
Confidence 47999999999999999999873 33333333333222222234679999999953 222334333 2357
Q ss_pred eEEEEEEecCCce
Q 029512 174 SCTCFLIYIFYTN 186 (192)
Q Consensus 174 ~~v~~vvD~s~~~ 186 (192)
|++++|+|++++.
T Consensus 69 ~~iv~v~D~~~~~ 81 (160)
T cd04156 69 DGLVYVVDSSDEA 81 (160)
T ss_pred CEEEEEEECCcHH
Confidence 8999999998764
No 87
>cd04154 Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis.
Probab=99.17 E-value=2.5e-10 Score=88.43 Aligned_cols=83 Identities=18% Similarity=0.207 Sum_probs=56.1
Q ss_pred CCCCeEEEEecCCCcHHHHHHHHhhccCceeecCCCCceeEEEEEeeCCeEEEEECCCCCCCCChHHHHHHHHHHHhhhc
Q 029512 90 PDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVSISY 169 (192)
Q Consensus 90 ~~~~~i~lvG~~n~GKStlin~L~~~~~~~~~~~~~g~T~~~~~~~~~~~~~lvDtPG~~~~~~~~~~~~~~~~~~~l~~ 169 (192)
....+|+++|++|+|||||+|+|++. ......+..|..... ....+..+.+|||||.. .....|..+
T Consensus 12 ~~~~kv~ivG~~~~GKTsL~~~l~~~-~~~~~~~t~g~~~~~-~~~~~~~l~l~D~~G~~------~~~~~~~~~----- 78 (173)
T cd04154 12 EREMRILILGLDNAGKTTILKKLLGE-DIDTISPTLGFQIKT-LEYEGYKLNIWDVGGQK------TLRPYWRNY----- 78 (173)
T ss_pred CCccEEEEECCCCCCHHHHHHHHccC-CCCCcCCccccceEE-EEECCEEEEEEECCCCH------HHHHHHHHH-----
Confidence 34579999999999999999999987 333333444432221 11236778999999942 222334333
Q ss_pred cCceeEEEEEEecCCc
Q 029512 170 RNFWSCTCFLIYIFYT 185 (192)
Q Consensus 170 ~~~~~~v~~vvD~s~~ 185 (192)
.+.+|++++|+|++.+
T Consensus 79 ~~~~d~~i~v~d~~~~ 94 (173)
T cd04154 79 FESTDALIWVVDSSDR 94 (173)
T ss_pred hCCCCEEEEEEECCCH
Confidence 2467999999998776
No 88
>cd01859 MJ1464 MJ1464. This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.
Probab=99.17 E-value=1e-10 Score=89.48 Aligned_cols=57 Identities=37% Similarity=0.567 Sum_probs=49.7
Q ss_pred CCCeEEEEecCCCcHHHHHHHHhhccCceeecCCCCceeEEEEEeeCCeEEEEECCCC
Q 029512 91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGY 148 (192)
Q Consensus 91 ~~~~i~lvG~~n~GKStlin~L~~~~~~~~~~~~~g~T~~~~~~~~~~~~~lvDtPG~ 148 (192)
...+++++|.+|+||||++|+|.+. ....+++.+|+|++.+....+..+.++||||+
T Consensus 100 ~~~~~~~ig~~~~Gkssl~~~l~~~-~~~~~~~~~~~t~~~~~~~~~~~~~~~DtpGi 156 (156)
T cd01859 100 KEGKVGVVGYPNVGKSSIINALKGR-HSASTSPSPGYTKGEQLVKITSKIYLLDTPGV 156 (156)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCC-CccccCCCCCeeeeeEEEEcCCCEEEEECcCC
Confidence 3568899999999999999999987 45677888999998887777788999999996
No 89
>cd00154 Rab Rab family. Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di
Probab=99.16 E-value=3e-10 Score=84.90 Aligned_cols=82 Identities=17% Similarity=0.098 Sum_probs=54.0
Q ss_pred CeEEEEecCCCcHHHHHHHHhhccCceee-cCCCCceeEEEEEe---eCCeEEEEECCCCCCCCChHHHHHHHHHHHhhh
Q 029512 93 PEIAFAGRSNVGKSSMLNALTRQWGVVRT-SDKPGLTQTINFFK---LGTKLCLVDLPGYGFAYAKEEVKDAWEELVSIS 168 (192)
Q Consensus 93 ~~i~lvG~~n~GKStlin~L~~~~~~~~~-~~~~g~T~~~~~~~---~~~~~~lvDtPG~~~~~~~~~~~~~~~~~~~l~ 168 (192)
.+|+++|.+|+|||||+|.+++.. .... ....+.+....... ....+.++|+||... ....+..+
T Consensus 1 ~~i~~~G~~~~GKStl~~~l~~~~-~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~------~~~~~~~~---- 69 (159)
T cd00154 1 FKIVLIGDSGVGKTSLLLRFVDGK-FDENYKSTIGVDFKSKTIEIDGKTVKLQIWDTAGQER------FRSITPSY---- 69 (159)
T ss_pred CeEEEECCCCCCHHHHHHHHHhCc-CCCccCCceeeeeEEEEEEECCEEEEEEEEecCChHH------HHHHHHHH----
Confidence 379999999999999999999874 2222 23334444433333 246789999999521 11122222
Q ss_pred ccCceeEEEEEEecCCce
Q 029512 169 YRNFWSCTCFLIYIFYTN 186 (192)
Q Consensus 169 ~~~~~~~v~~vvD~s~~~ 186 (192)
.+++|++++|+|+++++
T Consensus 70 -~~~~d~ii~v~d~~~~~ 86 (159)
T cd00154 70 -YRGAHGAILVYDITNRE 86 (159)
T ss_pred -hcCCCEEEEEEECCCHH
Confidence 34689999999998754
No 90
>smart00178 SAR Sar1p-like members of the Ras-family of small GTPases. Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus.
Probab=99.14 E-value=4e-10 Score=88.57 Aligned_cols=82 Identities=18% Similarity=0.292 Sum_probs=56.1
Q ss_pred CCeEEEEecCCCcHHHHHHHHhhccCceeecCCCCceeEEEEEeeCCeEEEEECCCCCCCCChHHHHHHHHHHHhhhccC
Q 029512 92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVSISYRN 171 (192)
Q Consensus 92 ~~~i~lvG~~n~GKStlin~L~~~~~~~~~~~~~g~T~~~~~~~~~~~~~lvDtPG~~~~~~~~~~~~~~~~~~~l~~~~ 171 (192)
..+|+++|.+|||||||+|.+.+. ......++.+.+.. .....+..+.++||||.. .....|..+ .+
T Consensus 17 ~~~i~ivG~~~~GKTsli~~l~~~-~~~~~~~t~~~~~~-~~~~~~~~~~~~D~~G~~------~~~~~~~~~-----~~ 83 (184)
T smart00178 17 HAKILFLGLDNAGKTTLLHMLKND-RLAQHQPTQHPTSE-ELAIGNIKFTTFDLGGHQ------QARRLWKDY-----FP 83 (184)
T ss_pred cCEEEEECCCCCCHHHHHHHHhcC-CCcccCCccccceE-EEEECCEEEEEEECCCCH------HHHHHHHHH-----hC
Confidence 479999999999999999999986 33333333333322 122236789999999963 223344433 24
Q ss_pred ceeEEEEEEecCCce
Q 029512 172 FWSCTCFLIYIFYTN 186 (192)
Q Consensus 172 ~~~~v~~vvD~s~~~ 186 (192)
+++++++|+|+++++
T Consensus 84 ~ad~ii~vvD~~~~~ 98 (184)
T smart00178 84 EVNGIVYLVDAYDKE 98 (184)
T ss_pred CCCEEEEEEECCcHH
Confidence 789999999998764
No 91
>KOG1489 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]
Probab=99.14 E-value=4.9e-11 Score=100.51 Aligned_cols=87 Identities=18% Similarity=0.190 Sum_probs=69.5
Q ss_pred CCeEEEEecCCCcHHHHHHHHhhccCceeecCCCCceeEEEEEe----eCCeEEEEECCCCCC-CCChHHHHHHHHHHHh
Q 029512 92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFK----LGTKLCLVDLPGYGF-AYAKEEVKDAWEELVS 166 (192)
Q Consensus 92 ~~~i~lvG~~n~GKStlin~L~~~~~~~~~~~~~g~T~~~~~~~----~~~~~~lvDtPG~~~-~~~~~~~~~~~~~~~~ 166 (192)
...|++||.||+|||||+|+|+..+ ..++.+++||..++... ....+.+-|.||+.. +..+..+-..|
T Consensus 196 iadvGLVG~PNAGKSTLL~als~AK--pkVa~YaFTTL~P~iG~v~yddf~q~tVADiPGiI~GAh~nkGlG~~F----- 268 (366)
T KOG1489|consen 196 IADVGLVGFPNAGKSTLLNALSRAK--PKVAHYAFTTLRPHIGTVNYDDFSQITVADIPGIIEGAHMNKGLGYKF----- 268 (366)
T ss_pred ecccceecCCCCcHHHHHHHhhccC--CcccccceeeeccccceeeccccceeEeccCccccccccccCcccHHH-----
Confidence 3477899999999999999999985 58999999999987443 245599999999976 33344444444
Q ss_pred hhccCceeEEEEEEecCCc
Q 029512 167 ISYRNFWSCTCFLIYIFYT 185 (192)
Q Consensus 167 l~~~~~~~~v~~vvD~s~~ 185 (192)
|++.+.++.+++|+|++-+
T Consensus 269 LrHiER~~~l~fVvD~s~~ 287 (366)
T KOG1489|consen 269 LRHIERCKGLLFVVDLSGK 287 (366)
T ss_pred HHHHHhhceEEEEEECCCc
Confidence 6777788999999999877
No 92
>cd01861 Rab6 Rab6 subfamily. Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate
Probab=99.13 E-value=3.9e-10 Score=85.58 Aligned_cols=80 Identities=16% Similarity=0.167 Sum_probs=52.7
Q ss_pred eEEEEecCCCcHHHHHHHHhhccCceeecCCCCceeEEEE--Eee-C--CeEEEEECCCCCCCCChHHHHHHHHHHHhhh
Q 029512 94 EIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINF--FKL-G--TKLCLVDLPGYGFAYAKEEVKDAWEELVSIS 168 (192)
Q Consensus 94 ~i~lvG~~n~GKStlin~L~~~~~~~~~~~~~g~T~~~~~--~~~-~--~~~~lvDtPG~~~~~~~~~~~~~~~~~~~l~ 168 (192)
+|+++|++|+|||||+|++++.. + .....++.+.+... ... + ..+.+|||||-. .....+..+
T Consensus 2 ki~liG~~~~GKSsli~~l~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~~------~~~~~~~~~---- 69 (161)
T cd01861 2 KLVFLGDQSVGKTSIITRFMYDT-F-DNQYQATIGIDFLSKTMYLEDKTVRLQLWDTAGQE------RFRSLIPSY---- 69 (161)
T ss_pred EEEEECCCCCCHHHHHHHHHcCC-C-CccCCCceeeeEEEEEEEECCEEEEEEEEECCCcH------HHHHHHHHH----
Confidence 78999999999999999999873 2 22444555544321 221 2 458999999932 122223222
Q ss_pred ccCceeEEEEEEecCCce
Q 029512 169 YRNFWSCTCFLIYIFYTN 186 (192)
Q Consensus 169 ~~~~~~~v~~vvD~s~~~ 186 (192)
.+.++++++|.|.++++
T Consensus 70 -~~~~~~ii~v~d~~~~~ 86 (161)
T cd01861 70 -IRDSSVAVVVYDITNRQ 86 (161)
T ss_pred -hccCCEEEEEEECcCHH
Confidence 24678899999987653
No 93
>cd04119 RJL RJL (RabJ-Like) subfamily. RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.
Probab=99.12 E-value=5.5e-10 Score=84.83 Aligned_cols=81 Identities=16% Similarity=0.149 Sum_probs=50.6
Q ss_pred eEEEEecCCCcHHHHHHHHhhccCceeecCCCCceeEEEEEe---eCCeEEEEECCCCCCCCChHHHHHHHHHHHhhhcc
Q 029512 94 EIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFK---LGTKLCLVDLPGYGFAYAKEEVKDAWEELVSISYR 170 (192)
Q Consensus 94 ~i~lvG~~n~GKStlin~L~~~~~~~~~~~~~g~T~~~~~~~---~~~~~~lvDtPG~~~~~~~~~~~~~~~~~~~l~~~ 170 (192)
+|+++|.+|||||||+|++++........+..+......... ....+.+|||||.. .....+..+ .
T Consensus 2 ki~~vG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~------~~~~~~~~~-----~ 70 (168)
T cd04119 2 KVISMGNSGVGKSCIIKRYCEGRFVSKYLPTIGIDYGVKKVSVRNKEVRVNFFDLSGHP------EYLEVRNEF-----Y 70 (168)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCeEEEEEEEECCccH------HHHHHHHHH-----h
Confidence 799999999999999999998742221122222221111121 24678999999952 111222222 2
Q ss_pred CceeEEEEEEecCCc
Q 029512 171 NFWSCTCFLIYIFYT 185 (192)
Q Consensus 171 ~~~~~v~~vvD~s~~ 185 (192)
+.++++++|+|.+++
T Consensus 71 ~~~d~~ilv~D~~~~ 85 (168)
T cd04119 71 KDTQGVLLVYDVTDR 85 (168)
T ss_pred ccCCEEEEEEECCCH
Confidence 467899999998765
No 94
>cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene.
Probab=99.12 E-value=5e-10 Score=86.55 Aligned_cols=80 Identities=19% Similarity=0.272 Sum_probs=56.0
Q ss_pred eEEEEecCCCcHHHHHHHHhhccCceeecCCCCceeEEEEEeeCCeEEEEECCCCCCCCChHHHHHHHHHHHhhhccCce
Q 029512 94 EIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVSISYRNFW 173 (192)
Q Consensus 94 ~i~lvG~~n~GKStlin~L~~~~~~~~~~~~~g~T~~~~~~~~~~~~~lvDtPG~~~~~~~~~~~~~~~~~~~l~~~~~~ 173 (192)
+|+++|.+|||||||+|.+++. ......++.|.+.. .....+..+.++||||- +.....|..+ .+.+
T Consensus 1 ~i~~~G~~~~GKTsl~~~l~~~-~~~~~~~t~g~~~~-~~~~~~~~~~i~D~~G~------~~~~~~~~~~-----~~~a 67 (167)
T cd04161 1 TLLTVGLDNAGKTTLVSALQGE-IPKKVAPTVGFTPT-KLRLDKYEVCIFDLGGG------ANFRGIWVNY-----YAEA 67 (167)
T ss_pred CEEEECCCCCCHHHHHHHHhCC-CCccccCcccceEE-EEEECCEEEEEEECCCc------HHHHHHHHHH-----HcCC
Confidence 4799999999999999999986 33334444455433 22334678999999993 2233444433 3578
Q ss_pred eEEEEEEecCCce
Q 029512 174 SCTCFLIYIFYTN 186 (192)
Q Consensus 174 ~~v~~vvD~s~~~ 186 (192)
+++++|+|+++++
T Consensus 68 ~~ii~V~D~s~~~ 80 (167)
T cd04161 68 HGLVFVVDSSDDD 80 (167)
T ss_pred CEEEEEEECCchh
Confidence 9999999998764
No 95
>cd01860 Rab5_related Rab5-related subfamily. This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo
Probab=99.12 E-value=3.8e-10 Score=85.83 Aligned_cols=83 Identities=19% Similarity=0.139 Sum_probs=53.7
Q ss_pred CeEEEEecCCCcHHHHHHHHhhccCceeecCCCCce---eEEEEEeeCCeEEEEECCCCCCCCChHHHHHHHHHHHhhhc
Q 029512 93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLT---QTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVSISY 169 (192)
Q Consensus 93 ~~i~lvG~~n~GKStlin~L~~~~~~~~~~~~~g~T---~~~~~~~~~~~~~lvDtPG~~~~~~~~~~~~~~~~~~~l~~ 169 (192)
.+|+++|++|+|||||+|+|++...........+.+ ........+..+.+|||||- +.....+..+
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~v~~~~~~~~~~i~D~~G~------~~~~~~~~~~----- 70 (163)
T cd01860 2 FKLVLLGDSSVGKSSLVLRFVKNEFSENQESTIGAAFLTQTVNLDDTTVKFEIWDTAGQ------ERYRSLAPMY----- 70 (163)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCch------HHHHHHHHHH-----
Confidence 479999999999999999999874222133344432 23333223467899999993 1122222222
Q ss_pred cCceeEEEEEEecCCce
Q 029512 170 RNFWSCTCFLIYIFYTN 186 (192)
Q Consensus 170 ~~~~~~v~~vvD~s~~~ 186 (192)
.+.++++++|+|+++++
T Consensus 71 ~~~~~~~i~v~d~~~~~ 87 (163)
T cd01860 71 YRGAAAAIVVYDITSEE 87 (163)
T ss_pred hccCCEEEEEEECcCHH
Confidence 24678999999988764
No 96
>cd04155 Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.
Probab=99.12 E-value=5.7e-10 Score=85.86 Aligned_cols=83 Identities=20% Similarity=0.355 Sum_probs=56.5
Q ss_pred CCCCeEEEEecCCCcHHHHHHHHhhccCceeecCCCCceeEEEEEeeCCeEEEEECCCCCCCCChHHHHHHHHHHHhhhc
Q 029512 90 PDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVSISY 169 (192)
Q Consensus 90 ~~~~~i~lvG~~n~GKStlin~L~~~~~~~~~~~~~g~T~~~~~~~~~~~~~lvDtPG~~~~~~~~~~~~~~~~~~~l~~ 169 (192)
....+|+++|++|+|||||++.|.+. ......+..|.+... ....+..+.++||||.. .....|..+
T Consensus 12 ~~~~~v~i~G~~g~GKStLl~~l~~~-~~~~~~~t~g~~~~~-i~~~~~~~~~~D~~G~~------~~~~~~~~~----- 78 (173)
T cd04155 12 SEEPRILILGLDNAGKTTILKQLASE-DISHITPTQGFNIKT-VQSDGFKLNVWDIGGQR------AIRPYWRNY----- 78 (173)
T ss_pred CCccEEEEEccCCCCHHHHHHHHhcC-CCcccCCCCCcceEE-EEECCEEEEEEECCCCH------HHHHHHHHH-----
Confidence 34679999999999999999999986 333344444544332 22247789999999952 222233332
Q ss_pred cCceeEEEEEEecCCc
Q 029512 170 RNFWSCTCFLIYIFYT 185 (192)
Q Consensus 170 ~~~~~~v~~vvD~s~~ 185 (192)
.+.++.+++|+|++.+
T Consensus 79 ~~~~~~ii~v~D~~~~ 94 (173)
T cd04155 79 FENTDCLIYVIDSADK 94 (173)
T ss_pred hcCCCEEEEEEeCCCH
Confidence 2467899999998753
No 97
>cd01866 Rab2 Rab2 subfamily. Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur
Probab=99.11 E-value=7.7e-10 Score=85.23 Aligned_cols=84 Identities=20% Similarity=0.154 Sum_probs=52.8
Q ss_pred CCeEEEEecCCCcHHHHHHHHhhccCceeecCCCCceeEEEEEee---CCeEEEEECCCCCCCCChHHHHHHHHHHHhhh
Q 029512 92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKL---GTKLCLVDLPGYGFAYAKEEVKDAWEELVSIS 168 (192)
Q Consensus 92 ~~~i~lvG~~n~GKStlin~L~~~~~~~~~~~~~g~T~~~~~~~~---~~~~~lvDtPG~~~~~~~~~~~~~~~~~~~l~ 168 (192)
..+|+++|.+|||||||+|++++...........|.+........ ...+.+|||||- +....... .
T Consensus 4 ~~ki~vvG~~~vGKSsLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~------~~~~~~~~-----~ 72 (168)
T cd01866 4 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDTAGQ------ESFRSITR-----S 72 (168)
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCc------HHHHHHHH-----H
Confidence 358999999999999999999987311111223333333222222 347899999993 22122211 1
Q ss_pred ccCceeEEEEEEecCCce
Q 029512 169 YRNFWSCTCFLIYIFYTN 186 (192)
Q Consensus 169 ~~~~~~~v~~vvD~s~~~ 186 (192)
..+.+|++++|+|+++++
T Consensus 73 ~~~~~d~il~v~d~~~~~ 90 (168)
T cd01866 73 YYRGAAGALLVYDITRRE 90 (168)
T ss_pred HhccCCEEEEEEECCCHH
Confidence 224678999999988653
No 98
>cd00880 Era_like Era (E. coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se
Probab=99.11 E-value=5.1e-10 Score=83.00 Aligned_cols=84 Identities=27% Similarity=0.235 Sum_probs=57.9
Q ss_pred EEecCCCcHHHHHHHHhhccCceeecCCCCceeEEEEEee----CCeEEEEECCCCCCCCChHHH-HHHHHHHHhhhccC
Q 029512 97 FAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKL----GTKLCLVDLPGYGFAYAKEEV-KDAWEELVSISYRN 171 (192)
Q Consensus 97 lvG~~n~GKStlin~L~~~~~~~~~~~~~g~T~~~~~~~~----~~~~~lvDtPG~~~~~~~~~~-~~~~~~~~~l~~~~ 171 (192)
++|++|+|||||+|+|++. .....+..+++|........ +..+.++||||+......... ...+.. ...
T Consensus 1 i~G~~gsGKstl~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~-----~~~ 74 (163)
T cd00880 1 LFGRTNAGKSSLLNALLGQ-EVAIVSPVPGTTTDPVEYVWELGPLGPVVLIDTPGIDEAGGLGREREELARR-----VLE 74 (163)
T ss_pred CcCCCCCCHHHHHHHHhCc-cccccCCCCCcEECCeEEEEEecCCCcEEEEECCCCCccccchhhHHHHHHH-----HHH
Confidence 5799999999999999987 44446666777766543332 668999999998764332211 112211 234
Q ss_pred ceeEEEEEEecCCce
Q 029512 172 FWSCTCFLIYIFYTN 186 (192)
Q Consensus 172 ~~~~v~~vvD~s~~~ 186 (192)
.+|.+++++|++.+.
T Consensus 75 ~~d~il~v~~~~~~~ 89 (163)
T cd00880 75 RADLILFVVDADLRA 89 (163)
T ss_pred hCCEEEEEEeCCCCC
Confidence 679999999998764
No 99
>cd04149 Arf6 Arf6 subfamily. Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed t
Probab=99.11 E-value=7.2e-10 Score=85.89 Aligned_cols=82 Identities=17% Similarity=0.181 Sum_probs=54.7
Q ss_pred CCeEEEEecCCCcHHHHHHHHhhccCceeecCCCCceeEEEEEeeCCeEEEEECCCCCCCCChHHHHHHHHHHHhhhccC
Q 029512 92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVSISYRN 171 (192)
Q Consensus 92 ~~~i~lvG~~n~GKStlin~L~~~~~~~~~~~~~g~T~~~~~~~~~~~~~lvDtPG~~~~~~~~~~~~~~~~~~~l~~~~ 171 (192)
..+|+++|.+|||||||+++|.... .....++.|.+.. ........+.+|||||.. .....|..+ .+
T Consensus 9 ~~kv~i~G~~~~GKTsli~~l~~~~-~~~~~~t~g~~~~-~~~~~~~~~~l~Dt~G~~------~~~~~~~~~-----~~ 75 (168)
T cd04149 9 EMRILMLGLDAAGKTTILYKLKLGQ-SVTTIPTVGFNVE-TVTYKNVKFNVWDVGGQD------KIRPLWRHY-----YT 75 (168)
T ss_pred ccEEEEECcCCCCHHHHHHHHccCC-CccccCCcccceE-EEEECCEEEEEEECCCCH------HHHHHHHHH-----hc
Confidence 4699999999999999999998652 2222233333332 122246789999999952 223334333 24
Q ss_pred ceeEEEEEEecCCce
Q 029512 172 FWSCTCFLIYIFYTN 186 (192)
Q Consensus 172 ~~~~v~~vvD~s~~~ 186 (192)
.+|++++|+|++.+.
T Consensus 76 ~a~~ii~v~D~t~~~ 90 (168)
T cd04149 76 GTQGLIFVVDSADRD 90 (168)
T ss_pred cCCEEEEEEeCCchh
Confidence 689999999998753
No 100
>cd01854 YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.
Probab=99.10 E-value=1.5e-10 Score=97.62 Aligned_cols=87 Identities=26% Similarity=0.337 Sum_probs=61.0
Q ss_pred CeEEEEecCCCcHHHHHHHHhhccCceeec-------CCCCceeEEEEEeeCCeEEEEECCCCCC----CCChHHHHHHH
Q 029512 93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTS-------DKPGLTQTINFFKLGTKLCLVDLPGYGF----AYAKEEVKDAW 161 (192)
Q Consensus 93 ~~i~lvG~~n~GKStlin~L~~~~~~~~~~-------~~~g~T~~~~~~~~~~~~~lvDtPG~~~----~~~~~~~~~~~ 161 (192)
..++++|++|+|||||+|+|++... ..++ ...++|+..+.+.......++||||+.. ....+++...|
T Consensus 162 k~~~~~G~sg~GKSTlin~l~~~~~-~~~g~v~~~~~~g~~tT~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~f 240 (287)
T cd01854 162 KTSVLVGQSGVGKSTLINALLPDLD-LATGEISEKLGRGRHTTTHRELFPLPGGGLLIDTPGFREFGLLHIDPEELAHYF 240 (287)
T ss_pred ceEEEECCCCCCHHHHHHHHhchhh-ccccceeccCCCCCcccceEEEEEcCCCCEEEECCCCCccCCccCCHHHHHHHh
Confidence 5899999999999999999998632 2222 2334788887777754568999999943 35567777888
Q ss_pred HHHHhhhccCceeEEEEEEecCCce
Q 029512 162 EELVSISYRNFWSCTCFLIYIFYTN 186 (192)
Q Consensus 162 ~~~~~l~~~~~~~~v~~vvD~s~~~ 186 (192)
.++..+. .-|..-||+|.+
T Consensus 241 ~~~~~~~------~~C~F~~C~H~~ 259 (287)
T cd01854 241 PEFRELA------GQCKFRDCTHTN 259 (287)
T ss_pred HHHHHHh------CCCCCCCCcCCC
Confidence 8776632 124555666654
No 101
>cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases. Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu
Probab=99.10 E-value=5.9e-10 Score=84.55 Aligned_cols=80 Identities=18% Similarity=0.193 Sum_probs=54.8
Q ss_pred eEEEEecCCCcHHHHHHHHhhccCceeecCCCCceeEEEEEeeCCeEEEEECCCCCCCCChHHHHHHHHHHHhhhccCce
Q 029512 94 EIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVSISYRNFW 173 (192)
Q Consensus 94 ~i~lvG~~n~GKStlin~L~~~~~~~~~~~~~g~T~~~~~~~~~~~~~lvDtPG~~~~~~~~~~~~~~~~~~~l~~~~~~ 173 (192)
+|+++|.+|+|||||+|++++.. ........+.+.+. ....+..+.+|||||... ....|..+. ..+
T Consensus 1 ki~iiG~~~~GKssli~~~~~~~-~~~~~~t~~~~~~~-~~~~~~~~~i~D~~G~~~------~~~~~~~~~-----~~~ 67 (158)
T cd00878 1 RILILGLDGAGKTTILYKLKLGE-VVTTIPTIGFNVET-VEYKNVSFTVWDVGGQDK------IRPLWKHYY-----ENT 67 (158)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCC-CCCCCCCcCcceEE-EEECCEEEEEEECCCChh------hHHHHHHHh-----ccC
Confidence 58999999999999999999973 33333444444332 222467899999999542 122343332 356
Q ss_pred eEEEEEEecCCce
Q 029512 174 SCTCFLIYIFYTN 186 (192)
Q Consensus 174 ~~v~~vvD~s~~~ 186 (192)
+++++|+|++.++
T Consensus 68 ~~~i~v~D~~~~~ 80 (158)
T cd00878 68 NGIIFVVDSSDRE 80 (158)
T ss_pred CEEEEEEECCCHH
Confidence 9999999998763
No 102
>KOG2484 consensus GTPase [General function prediction only]
Probab=99.10 E-value=4.1e-11 Score=103.44 Aligned_cols=62 Identities=32% Similarity=0.487 Sum_probs=56.9
Q ss_pred CCCeEEEEecCCCcHHHHHHHHhhccCceeecCCCCceeEEEEEeeCCeEEEEECCCCCCCCC
Q 029512 91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYA 153 (192)
Q Consensus 91 ~~~~i~lvG~~n~GKStlin~L~~~~~~~~~~~~~g~T~~~~~~~~~~~~~lvDtPG~~~~~~ 153 (192)
...+++++|+||+||||+||+|... ..+.+++.||.|+..+....+..+.|+|+||+.....
T Consensus 251 ~sIrvGViG~PNVGKSSvINsL~~~-k~C~vg~~pGvT~smqeV~Ldk~i~llDsPgiv~~~~ 312 (435)
T KOG2484|consen 251 TSIRVGIIGYPNVGKSSVINSLKRR-KACNVGNVPGVTRSMQEVKLDKKIRLLDSPGIVPPSI 312 (435)
T ss_pred cceEeeeecCCCCChhHHHHHHHHh-ccccCCCCccchhhhhheeccCCceeccCCceeecCC
Confidence 4569999999999999999999998 6799999999999999999999999999999876433
No 103
>PRK00098 GTPase RsgA; Reviewed
Probab=99.09 E-value=3.4e-10 Score=95.98 Aligned_cols=74 Identities=28% Similarity=0.432 Sum_probs=55.3
Q ss_pred CCeEEEEecCCCcHHHHHHHHhhccCceeecCCC-------CceeEEEEEeeCCeEEEEECCCCCC----CCChHHHHHH
Q 029512 92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKP-------GLTQTINFFKLGTKLCLVDLPGYGF----AYAKEEVKDA 160 (192)
Q Consensus 92 ~~~i~lvG~~n~GKStlin~L~~~~~~~~~~~~~-------g~T~~~~~~~~~~~~~lvDtPG~~~----~~~~~~~~~~ 160 (192)
...++++|++|||||||+|+|++.. ...++..+ .+|+..+.+.......++||||+.. ....+++...
T Consensus 164 gk~~~~~G~sgvGKStlin~l~~~~-~~~~g~v~~~~~~G~htT~~~~~~~~~~~~~~~DtpG~~~~~~~~~~~~~~~~~ 242 (298)
T PRK00098 164 GKVTVLAGQSGVGKSTLLNALAPDL-ELKTGEISEALGRGKHTTTHVELYDLPGGGLLIDTPGFSSFGLHDLEAEELEHY 242 (298)
T ss_pred CceEEEECCCCCCHHHHHHHHhCCc-CCCCcceeccCCCCCcccccEEEEEcCCCcEEEECCCcCccCCCCCCHHHHHHH
Confidence 4589999999999999999999863 22233222 3788777777766679999999873 3456777778
Q ss_pred HHHHHh
Q 029512 161 WEELVS 166 (192)
Q Consensus 161 ~~~~~~ 166 (192)
|.++..
T Consensus 243 f~~~~~ 248 (298)
T PRK00098 243 FPEFRP 248 (298)
T ss_pred HHHHHH
Confidence 777765
No 104
>cd04153 Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date.
Probab=99.09 E-value=8.5e-10 Score=85.73 Aligned_cols=82 Identities=17% Similarity=0.221 Sum_probs=55.9
Q ss_pred CCeEEEEecCCCcHHHHHHHHhhccCceeecCCCCceeEEEEEeeCCeEEEEECCCCCCCCChHHHHHHHHHHHhhhccC
Q 029512 92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVSISYRN 171 (192)
Q Consensus 92 ~~~i~lvG~~n~GKStlin~L~~~~~~~~~~~~~g~T~~~~~~~~~~~~~lvDtPG~~~~~~~~~~~~~~~~~~~l~~~~ 171 (192)
..+|+++|.+|+|||||++.|++.. .....+..+.+.. .....+..+.++||||.. .....|... .+
T Consensus 15 ~~kv~~~G~~~~GKTsl~~~l~~~~-~~~~~~t~~~~~~-~~~~~~~~~~l~D~~G~~------~~~~~~~~~-----~~ 81 (174)
T cd04153 15 EYKVIIVGLDNAGKTTILYQFLLGE-VVHTSPTIGSNVE-EIVYKNIRFLMWDIGGQE------SLRSSWNTY-----YT 81 (174)
T ss_pred ccEEEEECCCCCCHHHHHHHHccCC-CCCcCCccccceE-EEEECCeEEEEEECCCCH------HHHHHHHHH-----hh
Confidence 4589999999999999999998763 2333344443332 222346789999999953 223334333 24
Q ss_pred ceeEEEEEEecCCce
Q 029512 172 FWSCTCFLIYIFYTN 186 (192)
Q Consensus 172 ~~~~v~~vvD~s~~~ 186 (192)
.+|++++|+|+++++
T Consensus 82 ~~d~vi~V~D~s~~~ 96 (174)
T cd04153 82 NTDAVILVIDSTDRE 96 (174)
T ss_pred cCCEEEEEEECCCHH
Confidence 689999999998753
No 105
>cd04160 Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.
Probab=99.09 E-value=5e-10 Score=85.62 Aligned_cols=81 Identities=19% Similarity=0.215 Sum_probs=51.0
Q ss_pred eEEEEecCCCcHHHHHHHHhhccCc--eeecCCCCceeEEE---EEeeCCeEEEEECCCCCCCCChHHHHHHHHHHHhhh
Q 029512 94 EIAFAGRSNVGKSSMLNALTRQWGV--VRTSDKPGLTQTIN---FFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVSIS 168 (192)
Q Consensus 94 ~i~lvG~~n~GKStlin~L~~~~~~--~~~~~~~g~T~~~~---~~~~~~~~~lvDtPG~~~~~~~~~~~~~~~~~~~l~ 168 (192)
+|+++|++|+|||||+|.|++.... .........|.... ....+..+.+|||||... ....+..+
T Consensus 1 ~i~~vG~~~~GKstLi~~l~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~------~~~~~~~~---- 70 (167)
T cd04160 1 SVLILGLDNAGKTTFLEQLKTLFSKYKGLPPSKITPTVGLNIGTIEVGNARLKFWDLGGQES------LRSLWDKY---- 70 (167)
T ss_pred CEEEEecCCCCHHHHHHHHhhhcccccCCcccccCCccccceEEEEECCEEEEEEECCCChh------hHHHHHHH----
Confidence 4799999999999999999875211 01111122333222 222367899999999532 22233322
Q ss_pred ccCceeEEEEEEecCCc
Q 029512 169 YRNFWSCTCFLIYIFYT 185 (192)
Q Consensus 169 ~~~~~~~v~~vvD~s~~ 185 (192)
...++++++|+|++.+
T Consensus 71 -~~~~~~~v~vvd~~~~ 86 (167)
T cd04160 71 -YAECHAIIYVIDSTDR 86 (167)
T ss_pred -hCCCCEEEEEEECchH
Confidence 3467899999998765
No 106
>TIGR00437 feoB ferrous iron transporter FeoB. FeoB (773 amino acids in E. coli), a cytoplasmic membrane protein required for iron(II) update, is encoded in an operon with FeoA (75 amino acids), which is also required, and is regulated by Fur. There appear to be two copies in Archaeoglobus fulgidus and Clostridium acetobutylicum.
Probab=99.09 E-value=5.3e-10 Score=102.85 Aligned_cols=83 Identities=24% Similarity=0.215 Sum_probs=59.1
Q ss_pred ecCCCcHHHHHHHHhhccCceeecCCCCceeEEEEEe---eCCeEEEEECCCCCCCCChHHHHHHHHHHHhhhccCceeE
Q 029512 99 GRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFK---LGTKLCLVDLPGYGFAYAKEEVKDAWEELVSISYRNFWSC 175 (192)
Q Consensus 99 G~~n~GKStlin~L~~~~~~~~~~~~~g~T~~~~~~~---~~~~~~lvDtPG~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 175 (192)
|++|||||||+|+|++.. ..+++.+|+|.+..... .+..+.++||||...-...........++.. ...+|+
T Consensus 1 G~pNvGKSSL~N~Ltg~~--~~v~n~pG~Tv~~~~~~i~~~~~~i~lvDtPG~~~~~~~s~~e~v~~~~l~---~~~aDv 75 (591)
T TIGR00437 1 GNPNVGKSTLFNALTGAN--QTVGNWPGVTVEKKEGKLGFQGEDIEIVDLPGIYSLTTFSLEEEVARDYLL---NEKPDL 75 (591)
T ss_pred CCCCCCHHHHHHHHhCCC--CeecCCCCeEEEEEEEEEEECCeEEEEEECCCccccCccchHHHHHHHHHh---hcCCCE
Confidence 899999999999999974 57889999999875432 4678999999997652211111122222221 346799
Q ss_pred EEEEEecCCce
Q 029512 176 TCFLIYIFYTN 186 (192)
Q Consensus 176 v~~vvD~s~~~ 186 (192)
+++|+|++..+
T Consensus 76 vI~VvDat~le 86 (591)
T TIGR00437 76 VVNVVDASNLE 86 (591)
T ss_pred EEEEecCCcch
Confidence 99999998754
No 107
>cd01868 Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP
Probab=99.08 E-value=1.3e-09 Score=83.27 Aligned_cols=83 Identities=19% Similarity=0.165 Sum_probs=51.2
Q ss_pred CeEEEEecCCCcHHHHHHHHhhccCceeecCCCCceeEEEEEee-C--CeEEEEECCCCCCCCChHHHHHHHHHHHhhhc
Q 029512 93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKL-G--TKLCLVDLPGYGFAYAKEEVKDAWEELVSISY 169 (192)
Q Consensus 93 ~~i~lvG~~n~GKStlin~L~~~~~~~~~~~~~g~T~~~~~~~~-~--~~~~lvDtPG~~~~~~~~~~~~~~~~~~~l~~ 169 (192)
.+|+++|.+|||||||+|++++........+..+.+........ + ..+.+|||||.. .....+...
T Consensus 4 ~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~------~~~~~~~~~----- 72 (165)
T cd01868 4 FKIVLIGDSGVGKSNLLSRFTRNEFNLDSKSTIGVEFATRSIQIDGKTIKAQIWDTAGQE------RYRAITSAY----- 72 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCChH------HHHHHHHHH-----
Confidence 58999999999999999999987321222233332222222222 2 468899999942 111222222
Q ss_pred cCceeEEEEEEecCCce
Q 029512 170 RNFWSCTCFLIYIFYTN 186 (192)
Q Consensus 170 ~~~~~~v~~vvD~s~~~ 186 (192)
.+.++++++|.|+++++
T Consensus 73 ~~~~~~~i~v~d~~~~~ 89 (165)
T cd01868 73 YRGAVGALLVYDITKKQ 89 (165)
T ss_pred HCCCCEEEEEEECcCHH
Confidence 24678899999987643
No 108
>cd01863 Rab18 Rab18 subfamily. Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos
Probab=99.08 E-value=1.1e-09 Score=83.19 Aligned_cols=82 Identities=18% Similarity=0.136 Sum_probs=53.9
Q ss_pred eEEEEecCCCcHHHHHHHHhhccCceeecCCCCceeEEEEEee---CCeEEEEECCCCCCCCChHHHHHHHHHHHhhhcc
Q 029512 94 EIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKL---GTKLCLVDLPGYGFAYAKEEVKDAWEELVSISYR 170 (192)
Q Consensus 94 ~i~lvG~~n~GKStlin~L~~~~~~~~~~~~~g~T~~~~~~~~---~~~~~lvDtPG~~~~~~~~~~~~~~~~~~~l~~~ 170 (192)
+|+++|++|+|||||+|+|++........+..+.+........ ...+.+|||||... ....+..+ .
T Consensus 2 ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~------~~~~~~~~-----~ 70 (161)
T cd01863 2 KILLIGDSGVGKSSLLLRFTDDTFDPDLAATIGVDFKVKTLTVDGKKVKLAIWDTAGQER------FRTLTSSY-----Y 70 (161)
T ss_pred EEEEECCCCCCHHHHHHHHHcCCCCcccCCcccceEEEEEEEECCEEEEEEEEECCCchh------hhhhhHHH-----h
Confidence 7899999999999999999987422223444455444333222 35689999999421 11122222 3
Q ss_pred CceeEEEEEEecCCce
Q 029512 171 NFWSCTCFLIYIFYTN 186 (192)
Q Consensus 171 ~~~~~v~~vvD~s~~~ 186 (192)
+.+|++++|+|.++++
T Consensus 71 ~~~d~~i~v~d~~~~~ 86 (161)
T cd01863 71 RGAQGVILVYDVTRRD 86 (161)
T ss_pred CCCCEEEEEEECCCHH
Confidence 5679999999987653
No 109
>smart00175 RAB Rab subfamily of small GTPases. Rab GTPases are implicated in vesicle trafficking.
Probab=99.08 E-value=1.4e-09 Score=82.45 Aligned_cols=81 Identities=21% Similarity=0.181 Sum_probs=50.9
Q ss_pred CeEEEEecCCCcHHHHHHHHhhccCceeecCCCCceeE--EEEEee-C--CeEEEEECCCCCCCCChHHHHHHHHHHHhh
Q 029512 93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQT--INFFKL-G--TKLCLVDLPGYGFAYAKEEVKDAWEELVSI 167 (192)
Q Consensus 93 ~~i~lvG~~n~GKStlin~L~~~~~~~~~~~~~g~T~~--~~~~~~-~--~~~~lvDtPG~~~~~~~~~~~~~~~~~~~l 167 (192)
.+|+++|++|+|||||+|++++.. . .....+..+.+ ...... + ..+.+|||||-. .....+..+
T Consensus 1 ~kv~v~G~~~~GKTtli~~l~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~------~~~~~~~~~--- 69 (164)
T smart00175 1 FKIILIGDSGVGKSSLLSRFTDGK-F-SEQYKSTIGVDFKTKTIEVDGKRVKLQIWDTAGQE------RFRSITSSY--- 69 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC-C-CCCCCCceeeEEEEEEEEECCEEEEEEEEECCChH------HHHHHHHHH---
Confidence 379999999999999999999873 2 22222222222 122222 2 468899999932 111222222
Q ss_pred hccCceeEEEEEEecCCce
Q 029512 168 SYRNFWSCTCFLIYIFYTN 186 (192)
Q Consensus 168 ~~~~~~~~v~~vvD~s~~~ 186 (192)
.+.+|++++|+|++++.
T Consensus 70 --~~~~d~~ilv~d~~~~~ 86 (164)
T smart00175 70 --YRGAVGALLVYDITNRE 86 (164)
T ss_pred --hCCCCEEEEEEECCCHH
Confidence 24689999999998764
No 110
>cd01864 Rab19 Rab19 subfamily. Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.08 E-value=1.4e-09 Score=83.23 Aligned_cols=83 Identities=20% Similarity=0.246 Sum_probs=51.3
Q ss_pred CCeEEEEecCCCcHHHHHHHHhhccCceee-cCCCCceeEEEEEee-C--CeEEEEECCCCCCCCChHHHHHHHHHHHhh
Q 029512 92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRT-SDKPGLTQTINFFKL-G--TKLCLVDLPGYGFAYAKEEVKDAWEELVSI 167 (192)
Q Consensus 92 ~~~i~lvG~~n~GKStlin~L~~~~~~~~~-~~~~g~T~~~~~~~~-~--~~~~lvDtPG~~~~~~~~~~~~~~~~~~~l 167 (192)
..+|+++|.+|+|||||++++.+.. .... ....+.......... + ..+.+|||||. +.....+..+
T Consensus 3 ~~kv~vvG~~~~GKTsli~~l~~~~-~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~------~~~~~~~~~~--- 72 (165)
T cd01864 3 LFKIILIGDSNVGKTCVVQRFKSGT-FSERQGNTIGVDFTMKTLEIEGKRVKLQIWDTAGQ------ERFRTITQSY--- 72 (165)
T ss_pred eeEEEEECCCCCCHHHHHHHHhhCC-CcccCCCccceEEEEEEEEECCEEEEEEEEECCCh------HHHHHHHHHH---
Confidence 3589999999999999999998753 2211 122222222222222 2 47899999993 2222222222
Q ss_pred hccCceeEEEEEEecCCce
Q 029512 168 SYRNFWSCTCFLIYIFYTN 186 (192)
Q Consensus 168 ~~~~~~~~v~~vvD~s~~~ 186 (192)
.+.+|++++++|++.+.
T Consensus 73 --~~~~d~~llv~d~~~~~ 89 (165)
T cd01864 73 --YRSANGAIIAYDITRRS 89 (165)
T ss_pred --hccCCEEEEEEECcCHH
Confidence 34679999999998763
No 111
>cd04166 CysN_ATPS CysN_ATPS subfamily. CysN, together with protein CysD, form the ATP sulfurylase (ATPS) complex in some bacteria and lower eukaryotes. ATPS catalyzes the production of ATP sulfurylase (APS) and pyrophosphate (PPi) from ATP and sulfate. CysD, which catalyzes ATP hydrolysis, is a member of the ATP pyrophosphatase (ATP PPase) family. CysN hydrolysis of GTP is required for CysD hydrolysis of ATP; however, CysN hydrolysis of GTP is not dependent on CysD hydrolysis of ATP. CysN is an example of lateral gene transfer followed by acquisition of new function. In many organisms, an ATPS exists which is not GTP-dependent and shares no sequence or structural similarity to CysN.
Probab=99.07 E-value=3.2e-10 Score=91.07 Aligned_cols=80 Identities=15% Similarity=0.172 Sum_probs=54.3
Q ss_pred eEEEEecCCCcHHHHHHHHhhccCceee------------------------------cCCCCceeEEEEE---eeCCeE
Q 029512 94 EIAFAGRSNVGKSSMLNALTRQWGVVRT------------------------------SDKPGLTQTINFF---KLGTKL 140 (192)
Q Consensus 94 ~i~lvG~~n~GKStlin~L~~~~~~~~~------------------------------~~~~g~T~~~~~~---~~~~~~ 140 (192)
+|+++|++|+|||||+|+|+..... .+ ....|+|++.... ..+.++
T Consensus 1 ~i~iiG~~~~GKStL~~~Ll~~~~~-i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~~~~~~ 79 (208)
T cd04166 1 RFLTCGSVDDGKSTLIGRLLYDSKS-IFEDQLAALESKSCGTGGEPLDLALLVDGLQAEREQGITIDVAYRYFSTPKRKF 79 (208)
T ss_pred CEEEEECCCCCHHHHHHHHHHHcCC-CCHHHHHHHHHHHHhcCCCCcceeeeccCChhhhcCCcCeecceeEEecCCceE
Confidence 4899999999999999999865321 11 0125677776433 247789
Q ss_pred EEEECCCCCCCCChHHHHHHHHHHHhhhccCceeEEEEEEecCCc
Q 029512 141 CLVDLPGYGFAYAKEEVKDAWEELVSISYRNFWSCTCFLIYIFYT 185 (192)
Q Consensus 141 ~lvDtPG~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~~vvD~s~~ 185 (192)
.++||||... .. ..+ +...+.+|++++|+|++.+
T Consensus 80 ~liDTpG~~~------~~---~~~--~~~~~~ad~~llVvD~~~~ 113 (208)
T cd04166 80 IIADTPGHEQ------YT---RNM--VTGASTADLAILLVDARKG 113 (208)
T ss_pred EEEECCcHHH------HH---HHH--HHhhhhCCEEEEEEECCCC
Confidence 9999999521 11 111 2234578999999999764
No 112
>PRK15467 ethanolamine utilization protein EutP; Provisional
Probab=99.07 E-value=5.3e-10 Score=86.13 Aligned_cols=76 Identities=24% Similarity=0.281 Sum_probs=49.9
Q ss_pred eEEEEecCCCcHHHHHHHHhhccCceeecCCCCceeEEEEEeeCCeEEEEECCCCCCCCChHHHHHHHHHHHhhhccCce
Q 029512 94 EIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVSISYRNFW 173 (192)
Q Consensus 94 ~i~lvG~~n~GKStlin~L~~~~~~~~~~~~~g~T~~~~~~~~~~~~~lvDtPG~~~~~~~~~~~~~~~~~~~l~~~~~~ 173 (192)
+|+++|++|+|||||+|+|.+... .. ..|....+... .+|||||+.... .+. ...+ +...+.+
T Consensus 3 ~i~~iG~~~~GKstl~~~l~~~~~---~~---~~~~~v~~~~~----~~iDtpG~~~~~-~~~----~~~~--~~~~~~a 65 (158)
T PRK15467 3 RIAFVGAVGAGKTTLFNALQGNYT---LA---RKTQAVEFNDK----GDIDTPGEYFSH-PRW----YHAL--ITTLQDV 65 (158)
T ss_pred EEEEECCCCCCHHHHHHHHcCCCc---cC---ccceEEEECCC----CcccCCccccCC-HHH----HHHH--HHHHhcC
Confidence 799999999999999999998631 11 23333333221 269999986432 111 1222 2234678
Q ss_pred eEEEEEEecCCce
Q 029512 174 SCTCFLIYIFYTN 186 (192)
Q Consensus 174 ~~v~~vvD~s~~~ 186 (192)
|++++|+|++..+
T Consensus 66 d~il~v~d~~~~~ 78 (158)
T PRK15467 66 DMLIYVHGANDPE 78 (158)
T ss_pred CEEEEEEeCCCcc
Confidence 9999999998664
No 113
>cd04104 p47_IIGP_like p47 (47-kDa) family. The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei
Probab=99.06 E-value=7.3e-10 Score=88.24 Aligned_cols=85 Identities=21% Similarity=0.157 Sum_probs=51.3
Q ss_pred CeEEEEecCCCcHHHHHHHHhhccCceeecCCC---CceeEEEEEee--CCeEEEEECCCCCCCCChHHHHHHHHHHHhh
Q 029512 93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKP---GLTQTINFFKL--GTKLCLVDLPGYGFAYAKEEVKDAWEELVSI 167 (192)
Q Consensus 93 ~~i~lvG~~n~GKStlin~L~~~~~~~~~~~~~---g~T~~~~~~~~--~~~~~lvDtPG~~~~~~~~~~~~~~~~~~~l 167 (192)
.+|+++|.+|+|||||+|+|++........... .+|++...+.. ...+.+|||||++...... .+++..
T Consensus 2 ~kI~i~G~~g~GKSSLin~L~g~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~l~l~DtpG~~~~~~~~------~~~l~~ 75 (197)
T cd04104 2 LNIAVTGESGAGKSSFINALRGVGHEEEGAAPTGVVETTMKRTPYPHPKFPNVTLWDLPGIGSTAFPP------DDYLEE 75 (197)
T ss_pred eEEEEECCCCCCHHHHHHHHhccCCCCCCccccCccccccCceeeecCCCCCceEEeCCCCCcccCCH------HHHHHH
Confidence 479999999999999999999853111111111 24444443332 3579999999998643221 111111
Q ss_pred hccCceeEEEEEEecC
Q 029512 168 SYRNFWSCTCFLIYIF 183 (192)
Q Consensus 168 ~~~~~~~~v~~vvD~s 183 (192)
.....+|.++++.|.+
T Consensus 76 ~~~~~~d~~l~v~~~~ 91 (197)
T cd04104 76 MKFSEYDFFIIISSTR 91 (197)
T ss_pred hCccCcCEEEEEeCCC
Confidence 1234568888876654
No 114
>cd04152 Arl4_Arl7 Arl4/Arl7 subfamily. Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily.
Probab=99.06 E-value=1.2e-09 Score=85.63 Aligned_cols=83 Identities=18% Similarity=0.248 Sum_probs=53.9
Q ss_pred CCeEEEEecCCCcHHHHHHHHhhccCceeecCCCCceeEEEEEe----eCCeEEEEECCCCCCCCChHHHHHHHHHHHhh
Q 029512 92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFK----LGTKLCLVDLPGYGFAYAKEEVKDAWEELVSI 167 (192)
Q Consensus 92 ~~~i~lvG~~n~GKStlin~L~~~~~~~~~~~~~g~T~~~~~~~----~~~~~~lvDtPG~~~~~~~~~~~~~~~~~~~l 167 (192)
..+|+++|.+|||||||++++.... .....++.|.+....... .+..+.+|||||. +.....|..+
T Consensus 3 ~~kv~~vG~~~~GKTsli~~~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~~l~l~Dt~G~------~~~~~~~~~~--- 72 (183)
T cd04152 3 SLHIVMLGLDSAGKTTVLYRLKFNE-FVNTVPTKGFNTEKIKVSLGNSKGITFHFWDVGGQ------EKLRPLWKSY--- 72 (183)
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCC-cCCcCCccccceeEEEeeccCCCceEEEEEECCCc------HhHHHHHHHH---
Confidence 3589999999999999999998763 222222223222222221 2467999999994 2223344443
Q ss_pred hccCceeEEEEEEecCCce
Q 029512 168 SYRNFWSCTCFLIYIFYTN 186 (192)
Q Consensus 168 ~~~~~~~~v~~vvD~s~~~ 186 (192)
.+.+|++++|+|+++++
T Consensus 73 --~~~~d~ii~v~D~~~~~ 89 (183)
T cd04152 73 --TRCTDGIVFVVDSVDVE 89 (183)
T ss_pred --hccCCEEEEEEECCCHH
Confidence 34689999999998764
No 115
>cd04151 Arl1 Arl1 subfamily. Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability.
Probab=99.06 E-value=1.2e-09 Score=83.18 Aligned_cols=79 Identities=20% Similarity=0.204 Sum_probs=51.2
Q ss_pred eEEEEecCCCcHHHHHHHHhhccCceeecCCCCceeEEEEEeeCCeEEEEECCCCCCCCChHHHHHHHHHHHhhhccCce
Q 029512 94 EIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVSISYRNFW 173 (192)
Q Consensus 94 ~i~lvG~~n~GKStlin~L~~~~~~~~~~~~~g~T~~~~~~~~~~~~~lvDtPG~~~~~~~~~~~~~~~~~~~l~~~~~~ 173 (192)
+|+++|.+|+|||||+++|.... .....+..+.+.. .....+..+.+|||||... ....|..+. ..+
T Consensus 1 kv~lvG~~~~GKTsl~~~l~~~~-~~~~~~t~~~~~~-~~~~~~~~~~i~Dt~G~~~------~~~~~~~~~-----~~~ 67 (158)
T cd04151 1 RILILGLDNAGKTTILYRLQLGE-VVTTIPTIGFNVE-TVTYKNLKFQVWDLGGQTS------IRPYWRCYY-----SNT 67 (158)
T ss_pred CEEEECCCCCCHHHHHHHHccCC-CcCcCCccCcCeE-EEEECCEEEEEEECCCCHH------HHHHHHHHh-----cCC
Confidence 58999999999999999997653 2222222222221 1222467899999999632 223343332 368
Q ss_pred eEEEEEEecCCc
Q 029512 174 SCTCFLIYIFYT 185 (192)
Q Consensus 174 ~~v~~vvD~s~~ 185 (192)
+++++|+|++.+
T Consensus 68 ~~ii~v~d~~~~ 79 (158)
T cd04151 68 DAIIYVVDSTDR 79 (158)
T ss_pred CEEEEEEECCCH
Confidence 999999999765
No 116
>PLN03118 Rab family protein; Provisional
Probab=99.06 E-value=2e-09 Score=86.32 Aligned_cols=84 Identities=19% Similarity=0.142 Sum_probs=54.8
Q ss_pred CCCeEEEEecCCCcHHHHHHHHhhccCceeecCCCCceeEEEEEee---CCeEEEEECCCCCCCCChHHHHHHHHHHHhh
Q 029512 91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKL---GTKLCLVDLPGYGFAYAKEEVKDAWEELVSI 167 (192)
Q Consensus 91 ~~~~i~lvG~~n~GKStlin~L~~~~~~~~~~~~~g~T~~~~~~~~---~~~~~lvDtPG~~~~~~~~~~~~~~~~~~~l 167 (192)
...+|+++|.+|||||||+++|++. ......+..+.+........ ...+.+|||||... ....+..+
T Consensus 13 ~~~kv~ivG~~~vGKTsli~~l~~~-~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~------~~~~~~~~--- 82 (211)
T PLN03118 13 LSFKILLIGDSGVGKSSLLVSFISS-SVEDLAPTIGVDFKIKQLTVGGKRLKLTIWDTAGQER------FRTLTSSY--- 82 (211)
T ss_pred cceEEEEECcCCCCHHHHHHHHHhC-CCCCcCCCceeEEEEEEEEECCEEEEEEEEECCCchh------hHHHHHHH---
Confidence 3469999999999999999999986 33333444444333332322 24689999999532 11122222
Q ss_pred hccCceeEEEEEEecCCce
Q 029512 168 SYRNFWSCTCFLIYIFYTN 186 (192)
Q Consensus 168 ~~~~~~~~v~~vvD~s~~~ 186 (192)
.+.+|++++|+|+++++
T Consensus 83 --~~~~d~~vlv~D~~~~~ 99 (211)
T PLN03118 83 --YRNAQGIILVYDVTRRE 99 (211)
T ss_pred --HhcCCEEEEEEECCCHH
Confidence 24678899999987653
No 117
>PF00735 Septin: Septin; InterPro: IPR000038 Septins constitute a eukaryotic family of guanine nucleotide-binding proteins, most of which polymerise to form filaments []. Members of the family were first identified by genetic screening for Saccharomyces cerevisiae (Baker's yeast) mutants defective in cytokinesis []. Temperature-sensitive mutations in four genes, CDC3, CDC10, CDC11 and CDC12, were found to cause cell-cycle arrest and defects in bud growth and cytokinesis. The protein products of these genes localise at the division plane between mother and daughter cells, indicating a role in mother-daughter separation during cytokinesis []. Members of the family were therefore termed septins to reflect their role in septation and cell division. The identification of septin homologues in higher eukaryotes, which localise to the cleavage furrow in dividing cells, supports an orthologous function in cytokinesis. Septins have since been identified in most eukaryotes, except plants []. Septins are approximately 40-50 kDa in molecular mass, and typically comprise a conserved central core domain (more than 35% sequence identity between mammalian and yeast homologues) flanked by more divergent N- and C-termini. Most septins possess a P-loop motif in their N-terminal domain (which is characteristic of GTP-binding proteins), and a predicted C-terminal coiled-coil domain []. A number of septin interaction partners have been identified in yeast, many of which are components of the budding site selection machinery, kinase cascades or of the ubiquitination pathway. It has been proposed that septins may act as a scaffold that provides an interaction matrix for other proteins [, ]. In mammals, septins have been shown to regulate vesicle dynamics []. Mammalian septins have also been implicated in a variety of other cellular processes, including apoptosis, carcinogenesis and neurodegeneration []. This entry represents a variety of septins and homologous sequences involved in the cell division process.; GO: 0005525 GTP binding, 0007049 cell cycle; PDB: 2QAG_B 3FTQ_D 2QA5_A 2QNR_B 3TW4_A 3T5D_C.
Probab=99.06 E-value=3.9e-10 Score=94.91 Aligned_cols=64 Identities=23% Similarity=0.434 Sum_probs=38.8
Q ss_pred CeEEEEecCCCcHHHHHHHHhhccCceeec-CCC------CceeEEE----EEe---eCCeEEEEECCCCCCCCChHHH
Q 029512 93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTS-DKP------GLTQTIN----FFK---LGTKLCLVDLPGYGFAYAKEEV 157 (192)
Q Consensus 93 ~~i~lvG~~n~GKStlin~L~~~~~~~~~~-~~~------g~T~~~~----~~~---~~~~~~lvDtPG~~~~~~~~~~ 157 (192)
.+|+++|.+|+|||||||+|++.. ..... ..+ ..|.... ... ....+.++|||||++....+..
T Consensus 5 fnImVvG~sG~GKTTFIntL~~~~-~~~~~~~~~~~~~~~~~~~~i~~~~~~l~e~~~~l~LtiiDTpGfGd~i~n~~~ 82 (281)
T PF00735_consen 5 FNIMVVGESGLGKTTFINTLFNSD-IISEDSSIPPPSASISRTLEIEERTVELEENGVKLNLTIIDTPGFGDNIDNSDC 82 (281)
T ss_dssp EEEEEEECTTSSHHHHHHHHHTSS----------S------SCEEEEEEEEEEEETCEEEEEEEEEEC-CSSSSTHCHH
T ss_pred EEEEEECCCCCCHHHHHHHHHhcc-cccccccccccccccccccceeeEEEEeccCCcceEEEEEeCCCccccccchhh
Confidence 589999999999999999999874 22221 000 1111111 111 1357899999999986655433
No 118
>cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t
Probab=99.05 E-value=2e-09 Score=82.33 Aligned_cols=81 Identities=15% Similarity=0.071 Sum_probs=51.1
Q ss_pred CeEEEEecCCCcHHHHHHHHhhccCceeecCCCCceeEE--EEEe---eCCeEEEEECCCCCCCCChHHHHHHHHHHHhh
Q 029512 93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTI--NFFK---LGTKLCLVDLPGYGFAYAKEEVKDAWEELVSI 167 (192)
Q Consensus 93 ~~i~lvG~~n~GKStlin~L~~~~~~~~~~~~~g~T~~~--~~~~---~~~~~~lvDtPG~~~~~~~~~~~~~~~~~~~l 167 (192)
.+|+++|.+|||||||+|++.+.. .. ....+..+.+. .... ....+.+|||||.. .....+..+
T Consensus 3 ~ki~i~G~~~vGKSsli~~~~~~~-~~-~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~------~~~~~~~~~--- 71 (166)
T cd01869 3 FKLLLIGDSGVGKSCLLLRFADDT-YT-ESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQE------RFRTITSSY--- 71 (166)
T ss_pred EEEEEECCCCCCHHHHHHHHhcCC-CC-CCCCCccceeEEEEEEEECCEEEEEEEEECCCcH------hHHHHHHHH---
Confidence 489999999999999999999863 21 12222222222 1111 23468999999942 122222222
Q ss_pred hccCceeEEEEEEecCCce
Q 029512 168 SYRNFWSCTCFLIYIFYTN 186 (192)
Q Consensus 168 ~~~~~~~~v~~vvD~s~~~ 186 (192)
.+.+|++++|+|+++++
T Consensus 72 --~~~~~~ii~v~d~~~~~ 88 (166)
T cd01869 72 --YRGAHGIIIVYDVTDQE 88 (166)
T ss_pred --hCcCCEEEEEEECcCHH
Confidence 24689999999997753
No 119
>cd04159 Arl10_like Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.
Probab=99.05 E-value=1.5e-09 Score=81.23 Aligned_cols=80 Identities=19% Similarity=0.259 Sum_probs=50.5
Q ss_pred eEEEEecCCCcHHHHHHHHhhccCceeecCCCCceeEEE-EEeeCCeEEEEECCCCCCCCChHHHHHHHHHHHhhhccCc
Q 029512 94 EIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTIN-FFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVSISYRNF 172 (192)
Q Consensus 94 ~i~lvG~~n~GKStlin~L~~~~~~~~~~~~~g~T~~~~-~~~~~~~~~lvDtPG~~~~~~~~~~~~~~~~~~~l~~~~~ 172 (192)
.|+++|++|||||||+|+|++.... ....+....... ....+..+.++||||.. .....+..+. +.
T Consensus 1 ~i~i~G~~~~GKssl~~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~------~~~~~~~~~~-----~~ 67 (159)
T cd04159 1 EITLVGLQNSGKTTLVNVIAGGQFS--EDTIPTVGFNMRKVTKGNVTLKVWDLGGQP------RFRSMWERYC-----RG 67 (159)
T ss_pred CEEEEcCCCCCHHHHHHHHccCCCC--cCccCCCCcceEEEEECCEEEEEEECCCCH------hHHHHHHHHH-----hc
Confidence 3789999999999999999987321 111221111111 11234678999999952 2223343332 45
Q ss_pred eeEEEEEEecCCce
Q 029512 173 WSCTCFLIYIFYTN 186 (192)
Q Consensus 173 ~~~v~~vvD~s~~~ 186 (192)
+|.+++|+|+++++
T Consensus 68 ~d~ii~v~d~~~~~ 81 (159)
T cd04159 68 VNAIVYVVDAADRT 81 (159)
T ss_pred CCEEEEEEECCCHH
Confidence 78999999988643
No 120
>COG0536 Obg Predicted GTPase [General function prediction only]
Probab=99.05 E-value=1.9e-10 Score=97.86 Aligned_cols=86 Identities=20% Similarity=0.189 Sum_probs=68.4
Q ss_pred eEEEEecCCCcHHHHHHHHhhccCceeecCCCCceeEEEEEe----eCCeEEEEECCCCCC-CCChHHHHHHHHHHHhhh
Q 029512 94 EIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFK----LGTKLCLVDLPGYGF-AYAKEEVKDAWEELVSIS 168 (192)
Q Consensus 94 ~i~lvG~~n~GKStlin~L~~~~~~~~~~~~~g~T~~~~~~~----~~~~~~lvDtPG~~~-~~~~~~~~~~~~~~~~l~ 168 (192)
-|++||.||+||||||++++..+ ..++++|+||..++... .+..+.+-|.||+.. +.....+-..| |+
T Consensus 161 DVGLVG~PNaGKSTlls~vS~Ak--PKIadYpFTTL~PnLGvV~~~~~~sfv~ADIPGLIEGAs~G~GLG~~F-----Lr 233 (369)
T COG0536 161 DVGLVGLPNAGKSTLLSAVSAAK--PKIADYPFTTLVPNLGVVRVDGGESFVVADIPGLIEGASEGVGLGLRF-----LR 233 (369)
T ss_pred ccccccCCCCcHHHHHHHHhhcC--CcccCCccccccCcccEEEecCCCcEEEecCcccccccccCCCccHHH-----HH
Confidence 56899999999999999999986 78899999999986332 356799999999976 44444444444 66
Q ss_pred ccCceeEEEEEEecCCce
Q 029512 169 YRNFWSCTCFLIYIFYTN 186 (192)
Q Consensus 169 ~~~~~~~v~~vvD~s~~~ 186 (192)
+..-+.++++|||.+..+
T Consensus 234 HIERt~vL~hviD~s~~~ 251 (369)
T COG0536 234 HIERTRVLLHVIDLSPID 251 (369)
T ss_pred HHHhhheeEEEEecCccc
Confidence 677789999999998654
No 121
>PLN00223 ADP-ribosylation factor; Provisional
Probab=99.05 E-value=1.9e-09 Score=84.64 Aligned_cols=82 Identities=16% Similarity=0.215 Sum_probs=56.0
Q ss_pred CCeEEEEecCCCcHHHHHHHHhhccCceeecCCCCceeEEEEEeeCCeEEEEECCCCCCCCChHHHHHHHHHHHhhhccC
Q 029512 92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVSISYRN 171 (192)
Q Consensus 92 ~~~i~lvG~~n~GKStlin~L~~~~~~~~~~~~~g~T~~~~~~~~~~~~~lvDtPG~~~~~~~~~~~~~~~~~~~l~~~~ 171 (192)
..+|+++|.+|+|||||++.+... ......++.|.+.. .....+..+.+|||||- +.....|..+. +
T Consensus 17 ~~ki~ivG~~~~GKTsl~~~l~~~-~~~~~~pt~g~~~~-~~~~~~~~~~i~D~~Gq------~~~~~~~~~~~-----~ 83 (181)
T PLN00223 17 EMRILMVGLDAAGKTTILYKLKLG-EIVTTIPTIGFNVE-TVEYKNISFTVWDVGGQ------DKIRPLWRHYF-----Q 83 (181)
T ss_pred ccEEEEECCCCCCHHHHHHHHccC-CCccccCCcceeEE-EEEECCEEEEEEECCCC------HHHHHHHHHHh-----c
Confidence 368999999999999999999865 22333333333322 12224678999999993 33344554443 4
Q ss_pred ceeEEEEEEecCCce
Q 029512 172 FWSCTCFLIYIFYTN 186 (192)
Q Consensus 172 ~~~~v~~vvD~s~~~ 186 (192)
.+|++++|+|+++++
T Consensus 84 ~a~~iI~V~D~s~~~ 98 (181)
T PLN00223 84 NTQGLIFVVDSNDRD 98 (181)
T ss_pred cCCEEEEEEeCCcHH
Confidence 679999999998764
No 122
>cd01850 CDC_Septin CDC/Septin. Septins are a conserved family of GTP-binding proteins associated with diverse processes in dividing and non-dividing cells. They were first discovered in the budding yeast S. cerevisiae as a set of genes (CDC3, CDC10, CDC11 and CDC12) required for normal bud morphology. Septins are also present in metazoan cells, where they are required for cytokinesis in some systems, and implicated in a variety of other processes involving organization of the cell cortex and exocytosis. In humans, 12 septin genes generate dozens of polypeptides, many of which comprise heterooligomeric complexes. Since septin mutants are commonly defective in cytokinesis and formation of the neck formation of the neck filaments/septin rings, septins have been considered to be the primary constituents of the neck filaments. Septins belong to the GTPase superfamily for their conserved GTPase motifs and enzymatic activities.
Probab=99.04 E-value=2e-09 Score=90.42 Aligned_cols=63 Identities=27% Similarity=0.386 Sum_probs=41.3
Q ss_pred CCeEEEEecCCCcHHHHHHHHhhccCceeecCC-------CCceeEEEE----E-eeC--CeEEEEECCCCCCCCChH
Q 029512 92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDK-------PGLTQTINF----F-KLG--TKLCLVDLPGYGFAYAKE 155 (192)
Q Consensus 92 ~~~i~lvG~~n~GKStlin~L~~~~~~~~~~~~-------~g~T~~~~~----~-~~~--~~~~lvDtPG~~~~~~~~ 155 (192)
..+|+++|.+|+|||||+|+|++.. ....... ...|..... . ..| ..+.+||||||++....+
T Consensus 4 ~f~I~vvG~sg~GKSTliN~L~~~~-~~~~~~~~~~~~~~~~~T~~i~~~~~~i~~~g~~~~l~iiDTpGfgd~~~~~ 80 (276)
T cd01850 4 QFNIMVVGESGLGKSTFINTLFNTK-LIPSDYPPDPAEEHIDKTVEIKSSKAEIEENGVKLKLTVIDTPGFGDNINNS 80 (276)
T ss_pred EEEEEEEcCCCCCHHHHHHHHHcCC-CccccCCCCccccccCCceEEEEEEEEEEECCEEEEEEEEecCCccccccch
Confidence 4589999999999999999999873 3332211 112222211 1 123 469999999999865443
No 123
>cd01889 SelB_euk SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and euk
Probab=99.04 E-value=6.1e-10 Score=87.96 Aligned_cols=80 Identities=20% Similarity=0.267 Sum_probs=53.4
Q ss_pred eEEEEecCCCcHHHHHHHHhhccC-----ceeecCCCCceeEEEEE---e--------------eCCeEEEEECCCCCCC
Q 029512 94 EIAFAGRSNVGKSSMLNALTRQWG-----VVRTSDKPGLTQTINFF---K--------------LGTKLCLVDLPGYGFA 151 (192)
Q Consensus 94 ~i~lvG~~n~GKStlin~L~~~~~-----~~~~~~~~g~T~~~~~~---~--------------~~~~~~lvDtPG~~~~ 151 (192)
+|+++|.+|+|||||+|+|++... .......+|+|.+..+. . .+..+.+|||||..
T Consensus 2 ~i~i~G~~~~GKstLi~~l~~~~~~~~~~~~~~e~~~g~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~-- 79 (192)
T cd01889 2 NVGVLGHVDSGKTSLAKALSEIASTAAFDKNPQSQERGITLDLGFSSFYVDKPKHLRELINPGEENLQITLVDCPGHA-- 79 (192)
T ss_pred eEEEEecCCCCHHHHHHHHHhccchhhhccCHHHHHcCCeeeecceEEEecccccccccccccccCceEEEEECCCcH--
Confidence 689999999999999999997311 11223344666655321 1 15689999999962
Q ss_pred CChHHHHHHHHHHHhhhccCceeEEEEEEecCC
Q 029512 152 YAKEEVKDAWEELVSISYRNFWSCTCFLIYIFY 184 (192)
Q Consensus 152 ~~~~~~~~~~~~~~~l~~~~~~~~v~~vvD~s~ 184 (192)
. .+..+ +.....+|.+++|+|++.
T Consensus 80 ---~----~~~~~--~~~~~~~d~vi~VvD~~~ 103 (192)
T cd01889 80 ---S----LIRTI--IGGAQIIDLMLLVVDATK 103 (192)
T ss_pred ---H----HHHHH--HHHHhhCCEEEEEEECCC
Confidence 1 12222 233456799999999975
No 124
>KOG2423 consensus Nucleolar GTPase [General function prediction only]
Probab=99.04 E-value=7.4e-11 Score=101.98 Aligned_cols=62 Identities=31% Similarity=0.562 Sum_probs=56.2
Q ss_pred CCCeEEEEecCCCcHHHHHHHHhhccCceeecCCCCceeEEEEEeeCCeEEEEECCCCCCCCC
Q 029512 91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYA 153 (192)
Q Consensus 91 ~~~~i~lvG~~n~GKStlin~L~~~~~~~~~~~~~g~T~~~~~~~~~~~~~lvDtPG~~~~~~ 153 (192)
....|++||+||+||||+||+|... +++.+++.||-|.-.++..+-..++|||+||+..+..
T Consensus 306 kqISVGfiGYPNvGKSSiINTLR~K-kVCkvAPIpGETKVWQYItLmkrIfLIDcPGvVyps~ 367 (572)
T KOG2423|consen 306 KQISVGFIGYPNVGKSSIINTLRKK-KVCKVAPIPGETKVWQYITLMKRIFLIDCPGVVYPSS 367 (572)
T ss_pred cceeeeeecCCCCchHHHHHHHhhc-ccccccCCCCcchHHHHHHHHhceeEecCCCccCCCC
Confidence 4568999999999999999999998 7999999999999888888889999999999987654
No 125
>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi
Probab=99.03 E-value=2.7e-09 Score=82.02 Aligned_cols=84 Identities=18% Similarity=0.088 Sum_probs=52.1
Q ss_pred CCeEEEEecCCCcHHHHHHHHhhccCceeecCCCCceeEEEEEe---eCCeEEEEECCCCCCCCChHHHHHHHHHHHhhh
Q 029512 92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFK---LGTKLCLVDLPGYGFAYAKEEVKDAWEELVSIS 168 (192)
Q Consensus 92 ~~~i~lvG~~n~GKStlin~L~~~~~~~~~~~~~g~T~~~~~~~---~~~~~~lvDtPG~~~~~~~~~~~~~~~~~~~l~ 168 (192)
..+|+++|++|+|||||+|++++........+..+.+....... ....+.+|||||-. .....+..+
T Consensus 3 ~~ki~vvG~~~~GKSsl~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~------~~~~~~~~~---- 72 (167)
T cd01867 3 LFKLLLIGDSGVGKSCLLLRFSEDSFNPSFISTIGIDFKIRTIELDGKKIKLQIWDTAGQE------RFRTITTAY---- 72 (167)
T ss_pred ceEEEEECCCCCCHHHHHHHHhhCcCCcccccCccceEEEEEEEECCEEEEEEEEeCCchH------HHHHHHHHH----
Confidence 35899999999999999999998731111122223322222222 23468999999932 112222222
Q ss_pred ccCceeEEEEEEecCCce
Q 029512 169 YRNFWSCTCFLIYIFYTN 186 (192)
Q Consensus 169 ~~~~~~~v~~vvD~s~~~ 186 (192)
.+++|+++++.|+++++
T Consensus 73 -~~~ad~~i~v~d~~~~~ 89 (167)
T cd01867 73 -YRGAMGIILVYDITDEK 89 (167)
T ss_pred -hCCCCEEEEEEECcCHH
Confidence 35689999999987543
No 126
>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.
Probab=99.03 E-value=2e-09 Score=81.25 Aligned_cols=79 Identities=14% Similarity=0.059 Sum_probs=46.9
Q ss_pred CeEEEEecCCCcHHHHHHHHhhccCceeecCCCCceeE---EEEEeeC--CeEEEEECCCCCCCCChHHHHHHHHHHHhh
Q 029512 93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQT---INFFKLG--TKLCLVDLPGYGFAYAKEEVKDAWEELVSI 167 (192)
Q Consensus 93 ~~i~lvG~~n~GKStlin~L~~~~~~~~~~~~~g~T~~---~~~~~~~--~~~~lvDtPG~~~~~~~~~~~~~~~~~~~l 167 (192)
.+|+++|.+|||||||+|++++... ......++.+ ......+ ..+.+|||||-.. ....+..+
T Consensus 2 ~ki~iiG~~~vGKTsl~~~~~~~~~---~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~------~~~l~~~~--- 69 (162)
T cd04138 2 YKLVVVGAGGVGKSALTIQLIQNHF---VDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEE------YSAMRDQY--- 69 (162)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCC---cCCcCCcchheEEEEEEECCEEEEEEEEECCCCcc------hHHHHHHH---
Confidence 4799999999999999999998631 2222222221 1111112 3477899999421 12223222
Q ss_pred hccCceeEEEEEEecCCc
Q 029512 168 SYRNFWSCTCFLIYIFYT 185 (192)
Q Consensus 168 ~~~~~~~~v~~vvD~s~~ 185 (192)
.+.++.+++|+|.+++
T Consensus 70 --~~~~~~~i~v~~~~~~ 85 (162)
T cd04138 70 --MRTGEGFLCVFAINSR 85 (162)
T ss_pred --HhcCCEEEEEEECCCH
Confidence 2346777888777654
No 127
>cd04122 Rab14 Rab14 subfamily. Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GT
Probab=99.02 E-value=3.2e-09 Score=81.44 Aligned_cols=83 Identities=18% Similarity=0.174 Sum_probs=50.8
Q ss_pred CeEEEEecCCCcHHHHHHHHhhccCceeecCCCCceeEEEEEee---CCeEEEEECCCCCCCCChHHHHHHHHHHHhhhc
Q 029512 93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKL---GTKLCLVDLPGYGFAYAKEEVKDAWEELVSISY 169 (192)
Q Consensus 93 ~~i~lvG~~n~GKStlin~L~~~~~~~~~~~~~g~T~~~~~~~~---~~~~~lvDtPG~~~~~~~~~~~~~~~~~~~l~~ 169 (192)
.+|+++|.+|||||||++++.+...........+.+........ ...+.+|||||- +.....+.. .
T Consensus 3 ~ki~iiG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~------~~~~~~~~~-----~ 71 (166)
T cd04122 3 FKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVNGQKIKLQIWDTAGQ------ERFRAVTRS-----Y 71 (166)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCCCCcccceeEEEEEEEECCEEEEEEEEECCCc------HHHHHHHHH-----H
Confidence 48999999999999999999986311111112222222122222 346899999993 222222222 2
Q ss_pred cCceeEEEEEEecCCce
Q 029512 170 RNFWSCTCFLIYIFYTN 186 (192)
Q Consensus 170 ~~~~~~v~~vvD~s~~~ 186 (192)
.+.++++++|+|.++++
T Consensus 72 ~~~~~~~ilv~d~~~~~ 88 (166)
T cd04122 72 YRGAAGALMVYDITRRS 88 (166)
T ss_pred hcCCCEEEEEEECCCHH
Confidence 35789999999988754
No 128
>cd04113 Rab4 Rab4 subfamily. Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p
Probab=99.02 E-value=2.5e-09 Score=81.35 Aligned_cols=81 Identities=16% Similarity=0.163 Sum_probs=49.8
Q ss_pred eEEEEecCCCcHHHHHHHHhhccCceeecCCCCceeEEEEEee---CCeEEEEECCCCCCCCChHHHHHHHHHHHhhhcc
Q 029512 94 EIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKL---GTKLCLVDLPGYGFAYAKEEVKDAWEELVSISYR 170 (192)
Q Consensus 94 ~i~lvG~~n~GKStlin~L~~~~~~~~~~~~~g~T~~~~~~~~---~~~~~lvDtPG~~~~~~~~~~~~~~~~~~~l~~~ 170 (192)
+|+++|.+|||||||+|+|++...........+.......... ...+.+|||||.. .....+.. ..
T Consensus 2 ki~v~G~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~------~~~~~~~~-----~~ 70 (161)
T cd04113 2 KFIIIGSSGTGKSCLLHRFVENKFKEDSQHTIGVEFGSKIIRVGGKRVKLQIWDTAGQE------RFRSVTRS-----YY 70 (161)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCEEEEEEEEECcchH------HHHHhHHH-----Hh
Confidence 7899999999999999999986321211222222222121222 3468899999942 11112222 23
Q ss_pred CceeEEEEEEecCCc
Q 029512 171 NFWSCTCFLIYIFYT 185 (192)
Q Consensus 171 ~~~~~v~~vvD~s~~ 185 (192)
+.+|++++|+|.+++
T Consensus 71 ~~~~~~i~v~d~~~~ 85 (161)
T cd04113 71 RGAAGALLVYDITNR 85 (161)
T ss_pred cCCCEEEEEEECCCH
Confidence 467899999998774
No 129
>cd00881 GTP_translation_factor GTP translation factor family. This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function.
Probab=99.02 E-value=1.5e-09 Score=84.06 Aligned_cols=81 Identities=14% Similarity=0.149 Sum_probs=52.4
Q ss_pred eEEEEecCCCcHHHHHHHHhhccCceee--------------cCCCCceeEEEEEe---eCCeEEEEECCCCCCCCChHH
Q 029512 94 EIAFAGRSNVGKSSMLNALTRQWGVVRT--------------SDKPGLTQTINFFK---LGTKLCLVDLPGYGFAYAKEE 156 (192)
Q Consensus 94 ~i~lvG~~n~GKStlin~L~~~~~~~~~--------------~~~~g~T~~~~~~~---~~~~~~lvDtPG~~~~~~~~~ 156 (192)
+|+++|.+|+|||||+|+|++....... ....+.|.+..... .+..+.+|||||+..
T Consensus 1 ~v~v~G~~~~GKStlln~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~------ 74 (189)
T cd00881 1 NVGIAGHVDHGKTTLTERLLYVTGDIERDGTVEETFLDVLKEERERGITIKSGVATFEWPDRRVNFIDTPGHED------ 74 (189)
T ss_pred CEEEEeCCCCCHHHHHHHHHHhcCCCCcCCceecccccCCHHHHHcCCCeecceEEEeeCCEEEEEEeCCCcHH------
Confidence 4899999999999999999987421111 11234454433222 357799999999642
Q ss_pred HHHHHHHHHhhhccCceeEEEEEEecCCc
Q 029512 157 VKDAWEELVSISYRNFWSCTCFLIYIFYT 185 (192)
Q Consensus 157 ~~~~~~~~~~l~~~~~~~~v~~vvD~s~~ 185 (192)
....+.. ..+.+|++++|+|++++
T Consensus 75 ~~~~~~~-----~~~~~d~~i~v~d~~~~ 98 (189)
T cd00881 75 FSSEVIR-----GLSVSDGAILVVDANEG 98 (189)
T ss_pred HHHHHHH-----HHHhcCEEEEEEECCCC
Confidence 1112222 12468999999999865
No 130
>KOG1547 consensus Septin CDC10 and related P-loop GTPases [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms; Cytoskeleton]
Probab=99.02 E-value=2.5e-10 Score=93.19 Aligned_cols=65 Identities=28% Similarity=0.408 Sum_probs=43.4
Q ss_pred CCCeEEEEecCCCcHHHHHHHHhhccCceeecCCCC------ceeEEEEE-------eeCCeEEEEECCCCCCCCChHH
Q 029512 91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPG------LTQTINFF-------KLGTKLCLVDLPGYGFAYAKEE 156 (192)
Q Consensus 91 ~~~~i~lvG~~n~GKStlin~L~~~~~~~~~~~~~g------~T~~~~~~-------~~~~~~~lvDtPG~~~~~~~~~ 156 (192)
-.+.|++||++|.|||||+|+|+.++ +...+..++ .|.+.... ...-++.++||||||+....+.
T Consensus 45 F~FNIMVVgqSglgkstlinTlf~s~-v~~~s~~~~~~~p~pkT~eik~~thvieE~gVklkltviDTPGfGDqInN~n 122 (336)
T KOG1547|consen 45 FDFNIMVVGQSGLGKSTLINTLFKSH-VSDSSSSDNSAEPIPKTTEIKSITHVIEEKGVKLKLTVIDTPGFGDQINNDN 122 (336)
T ss_pred CceEEEEEecCCCCchhhHHHHHHHH-HhhccCCCcccCcccceEEEEeeeeeeeecceEEEEEEecCCCcccccCccc
Confidence 35799999999999999999999873 222222111 22222211 1234689999999999766653
No 131
>cd04124 RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b
Probab=99.02 E-value=2.8e-09 Score=81.63 Aligned_cols=82 Identities=15% Similarity=0.043 Sum_probs=49.8
Q ss_pred CeEEEEecCCCcHHHHHHHHhhccCceee-cCCCCceeEEEEEe---eCCeEEEEECCCCCCCCChHHHHHHHHHHHhhh
Q 029512 93 PEIAFAGRSNVGKSSMLNALTRQWGVVRT-SDKPGLTQTINFFK---LGTKLCLVDLPGYGFAYAKEEVKDAWEELVSIS 168 (192)
Q Consensus 93 ~~i~lvG~~n~GKStlin~L~~~~~~~~~-~~~~g~T~~~~~~~---~~~~~~lvDtPG~~~~~~~~~~~~~~~~~~~l~ 168 (192)
.+|+++|.+|||||||++.+.+.. .... ....+.+....... ....+.+|||||.. .....+..+
T Consensus 1 ~ki~vvG~~~vGKTsli~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~------~~~~~~~~~---- 69 (161)
T cd04124 1 VKIILLGDSAVGKSKLVERFLMDG-YEPQQLSTYALTLYKHNAKFEGKTILVDFWDTAGQE------RFQTMHASY---- 69 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCC-CCCCcCCceeeEEEEEEEEECCEEEEEEEEeCCCch------hhhhhhHHH----
Confidence 378999999999999999999763 2111 11112221111111 23467899999942 112222222
Q ss_pred ccCceeEEEEEEecCCce
Q 029512 169 YRNFWSCTCFLIYIFYTN 186 (192)
Q Consensus 169 ~~~~~~~v~~vvD~s~~~ 186 (192)
.+.+|++++|+|++++.
T Consensus 70 -~~~~d~~i~v~d~~~~~ 86 (161)
T cd04124 70 -YHKAHACILVFDVTRKI 86 (161)
T ss_pred -hCCCCEEEEEEECCCHH
Confidence 34679999999987653
No 132
>cd01865 Rab3 Rab3 subfamily. The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot
Probab=99.02 E-value=2.8e-09 Score=81.80 Aligned_cols=83 Identities=17% Similarity=0.086 Sum_probs=50.6
Q ss_pred CeEEEEecCCCcHHHHHHHHhhccCceeecCCCCceeEEEEEe-e--CCeEEEEECCCCCCCCChHHHHHHHHHHHhhhc
Q 029512 93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFK-L--GTKLCLVDLPGYGFAYAKEEVKDAWEELVSISY 169 (192)
Q Consensus 93 ~~i~lvG~~n~GKStlin~L~~~~~~~~~~~~~g~T~~~~~~~-~--~~~~~lvDtPG~~~~~~~~~~~~~~~~~~~l~~ 169 (192)
.+|+++|.+|||||||+|++.+........+..|.+....... . ...+.+|||||.. .....+. ..
T Consensus 2 ~ki~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~g~~------~~~~~~~-----~~ 70 (165)
T cd01865 2 FKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRNDKRVKLQIWDTAGQE------RYRTITT-----AY 70 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCChH------HHHHHHH-----HH
Confidence 4799999999999999999998731111112222221111111 1 3568999999942 1122222 22
Q ss_pred cCceeEEEEEEecCCce
Q 029512 170 RNFWSCTCFLIYIFYTN 186 (192)
Q Consensus 170 ~~~~~~v~~vvD~s~~~ 186 (192)
.+.++++++|+|+++++
T Consensus 71 ~~~~~~~l~v~d~~~~~ 87 (165)
T cd01865 71 YRGAMGFILMYDITNEE 87 (165)
T ss_pred ccCCcEEEEEEECCCHH
Confidence 45788899999987653
No 133
>KOG1490 consensus GTP-binding protein CRFG/NOG1 (ODN superfamily) [General function prediction only]
Probab=99.02 E-value=3.4e-10 Score=100.26 Aligned_cols=97 Identities=20% Similarity=0.185 Sum_probs=71.8
Q ss_pred cccCCC--CCCCCeEEEEecCCCcHHHHHHHHhhccCceeecCCCCceeEEEEEeeC---CeEEEEECCCCCCCCChHHH
Q 029512 83 VSSSFP--APDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLG---TKLCLVDLPGYGFAYAKEEV 157 (192)
Q Consensus 83 ~~~~~~--~~~~~~i~lvG~~n~GKStlin~L~~~~~~~~~~~~~g~T~~~~~~~~~---~~~~lvDtPG~~~~~~~~~~ 157 (192)
..+..| .++..+++++|+|||||||++|.++... ..+.++++||+..-..+.+ ..|+++||||+.+....+..
T Consensus 157 hl~rlPsIDp~trTlllcG~PNVGKSSf~~~vtrad--vevqpYaFTTksL~vGH~dykYlrwQViDTPGILD~plEdrN 234 (620)
T KOG1490|consen 157 HLSRLPAIDPNTRTLLVCGYPNVGKSSFNNKVTRAD--DEVQPYAFTTKLLLVGHLDYKYLRWQVIDTPGILDRPEEDRN 234 (620)
T ss_pred HHhcCCCCCCCcCeEEEecCCCCCcHhhcccccccc--cccCCcccccchhhhhhhhhheeeeeecCCccccCcchhhhh
Confidence 334555 4678899999999999999999999875 7789999999987665554 46899999999886554444
Q ss_pred HHHHHHHHhhhccCceeEEEEEEecC
Q 029512 158 KDAWEELVSISYRNFWSCTCFLIYIF 183 (192)
Q Consensus 158 ~~~~~~~~~l~~~~~~~~v~~vvD~s 183 (192)
.....++..+.+.+ ..|++++|.|
T Consensus 235 ~IEmqsITALAHLr--aaVLYfmDLS 258 (620)
T KOG1490|consen 235 IIEMQIITALAHLR--SAVLYFMDLS 258 (620)
T ss_pred HHHHHHHHHHHHhh--hhheeeeech
Confidence 44445554444444 4578888865
No 134
>cd01862 Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-
Probab=99.01 E-value=4.4e-09 Score=80.49 Aligned_cols=81 Identities=15% Similarity=0.126 Sum_probs=49.3
Q ss_pred eEEEEecCCCcHHHHHHHHhhccCceee-cCCCCceeEEEEEe---eCCeEEEEECCCCCCCCChHHHHHHHHHHHhhhc
Q 029512 94 EIAFAGRSNVGKSSMLNALTRQWGVVRT-SDKPGLTQTINFFK---LGTKLCLVDLPGYGFAYAKEEVKDAWEELVSISY 169 (192)
Q Consensus 94 ~i~lvG~~n~GKStlin~L~~~~~~~~~-~~~~g~T~~~~~~~---~~~~~~lvDtPG~~~~~~~~~~~~~~~~~~~l~~ 169 (192)
+|+++|++|+|||||+|++++.. .... ....+.+....... ....+.+|||||... ....+..+
T Consensus 2 ki~viG~~~~GKSsl~~~l~~~~-~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~~~------~~~~~~~~----- 69 (172)
T cd01862 2 KVIILGDSGVGKTSLMNQYVNKK-FSNQYKATIGADFLTKEVTVDDKLVTLQIWDTAGQER------FQSLGVAF----- 69 (172)
T ss_pred EEEEECCCCCCHHHHHHHHhcCC-CCcCcCCccceEEEEEEEEECCEEEEEEEEeCCChHH------HHhHHHHH-----
Confidence 79999999999999999999873 2111 11222211111111 124567999999421 11223222
Q ss_pred cCceeEEEEEEecCCce
Q 029512 170 RNFWSCTCFLIYIFYTN 186 (192)
Q Consensus 170 ~~~~~~v~~vvD~s~~~ 186 (192)
.+.+|.+++++|++++.
T Consensus 70 ~~~~d~~i~v~d~~~~~ 86 (172)
T cd01862 70 YRGADCCVLVYDVTNPK 86 (172)
T ss_pred hcCCCEEEEEEECCCHH
Confidence 35678999999987653
No 135
>TIGR02528 EutP ethanolamine utilization protein, EutP. This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site.
Probab=99.01 E-value=1.6e-09 Score=80.98 Aligned_cols=76 Identities=18% Similarity=0.232 Sum_probs=50.1
Q ss_pred eEEEEecCCCcHHHHHHHHhhccCceeecCCCCceeEEEEEeeCCeEEEEECCCCCCCCChHHHHHHHHHHHhhhccCce
Q 029512 94 EIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVSISYRNFW 173 (192)
Q Consensus 94 ~i~lvG~~n~GKStlin~L~~~~~~~~~~~~~g~T~~~~~~~~~~~~~lvDtPG~~~~~~~~~~~~~~~~~~~l~~~~~~ 173 (192)
+|+++|.+|||||||+|++++.. .. . ..|....+. + .+|||||... .....+..+. ...+++
T Consensus 2 kv~liG~~~vGKSsL~~~l~~~~-~~----~-~~t~~~~~~--~---~~iDt~G~~~-----~~~~~~~~~~--~~~~~a 63 (142)
T TIGR02528 2 RIMFIGSVGCGKTTLTQALQGEE-IL----Y-KKTQAVEYN--D---GAIDTPGEYV-----ENRRLYSALI--VTAADA 63 (142)
T ss_pred eEEEECCCCCCHHHHHHHHcCCc-cc----c-ccceeEEEc--C---eeecCchhhh-----hhHHHHHHHH--HHhhcC
Confidence 78999999999999999999873 21 1 123322221 1 6899999631 1111233332 236789
Q ss_pred eEEEEEEecCCceE
Q 029512 174 SCTCFLIYIFYTNV 187 (192)
Q Consensus 174 ~~v~~vvD~s~~~~ 187 (192)
|++++|+|++++..
T Consensus 64 d~vilv~d~~~~~s 77 (142)
T TIGR02528 64 DVIALVQSATDPES 77 (142)
T ss_pred CEEEEEecCCCCCc
Confidence 99999999987753
No 136
>cd04127 Rab27A Rab27a subfamily. The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated
Probab=99.00 E-value=3.4e-09 Score=82.12 Aligned_cols=84 Identities=18% Similarity=0.058 Sum_probs=50.8
Q ss_pred CCeEEEEecCCCcHHHHHHHHhhccCceeecCCCCceeEEEEEe-------------eCCeEEEEECCCCCCCCChHHHH
Q 029512 92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFK-------------LGTKLCLVDLPGYGFAYAKEEVK 158 (192)
Q Consensus 92 ~~~i~lvG~~n~GKStlin~L~~~~~~~~~~~~~g~T~~~~~~~-------------~~~~~~lvDtPG~~~~~~~~~~~ 158 (192)
..+|+++|.+|||||||+|++.+...........+......... ....+.+|||||- +...
T Consensus 4 ~~ki~ivG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~------~~~~ 77 (180)
T cd04127 4 LIKFLALGDSGVGKTSFLYQYTDNKFNPKFITTVGIDFREKRVVYNSSGPGGTLGRGQRIHLQLWDTAGQ------ERFR 77 (180)
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCCCCccCCCccceEEEEEEEEEcCccccccccCCCEEEEEEEeCCCh------HHHH
Confidence 35899999999999999999998632111112222111111111 1256899999992 2222
Q ss_pred HHHHHHHhhhccCceeEEEEEEecCCce
Q 029512 159 DAWEELVSISYRNFWSCTCFLIYIFYTN 186 (192)
Q Consensus 159 ~~~~~~~~l~~~~~~~~v~~vvD~s~~~ 186 (192)
..+..+ .++++++++|.|.++++
T Consensus 78 ~~~~~~-----~~~~~~~i~v~d~~~~~ 100 (180)
T cd04127 78 SLTTAF-----FRDAMGFLLIFDLTNEQ 100 (180)
T ss_pred HHHHHH-----hCCCCEEEEEEECCCHH
Confidence 222222 34689999999987653
No 137
>cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily. This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali
Probab=99.00 E-value=3.6e-09 Score=80.38 Aligned_cols=79 Identities=14% Similarity=0.089 Sum_probs=49.9
Q ss_pred CeEEEEecCCCcHHHHHHHHhhccCceeecCCCCceeEEE--EE-eeC--CeEEEEECCCCCCCCChHHHHHHHHHHHhh
Q 029512 93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTIN--FF-KLG--TKLCLVDLPGYGFAYAKEEVKDAWEELVSI 167 (192)
Q Consensus 93 ~~i~lvG~~n~GKStlin~L~~~~~~~~~~~~~g~T~~~~--~~-~~~--~~~~lvDtPG~~~~~~~~~~~~~~~~~~~l 167 (192)
.+|+++|.+|+|||||+|++.+.. .+.....++.+.. .. ..+ ..+.+|||||... ....+..+
T Consensus 3 ~ki~i~G~~~~GKtsl~~~~~~~~---~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~------~~~~~~~~--- 70 (164)
T cd04145 3 YKLVVVGGGGVGKSALTIQFIQSY---FVTDYDPTIEDSYTKQCEIDGQWAILDILDTAGQEE------FSAMREQY--- 70 (164)
T ss_pred eEEEEECCCCCcHHHHHHHHHhCC---CCcccCCCccceEEEEEEECCEEEEEEEEECCCCcc------hhHHHHHH---
Confidence 589999999999999999999863 2333333333211 11 112 4688999999532 11122222
Q ss_pred hccCceeEEEEEEecCCc
Q 029512 168 SYRNFWSCTCFLIYIFYT 185 (192)
Q Consensus 168 ~~~~~~~~v~~vvD~s~~ 185 (192)
.+.+|.+++|+|++++
T Consensus 71 --~~~~~~~ilv~d~~~~ 86 (164)
T cd04145 71 --MRTGEGFLLVFSVTDR 86 (164)
T ss_pred --HhhCCEEEEEEECCCH
Confidence 2357888999998764
No 138
>cd00879 Sar1 Sar1 subfamily. Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.
Probab=99.00 E-value=4.2e-09 Score=82.50 Aligned_cols=81 Identities=20% Similarity=0.237 Sum_probs=53.0
Q ss_pred CCeEEEEecCCCcHHHHHHHHhhccCceeecCCCCceeEEEEEeeCCeEEEEECCCCCCCCChHHHHHHHHHHHhhhccC
Q 029512 92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVSISYRN 171 (192)
Q Consensus 92 ~~~i~lvG~~n~GKStlin~L~~~~~~~~~~~~~g~T~~~~~~~~~~~~~lvDtPG~~~~~~~~~~~~~~~~~~~l~~~~ 171 (192)
..+|+++|++|+|||||+|.+.+.. .....+..+.+.. .....+..+.++||||.. .....|..+ .+
T Consensus 19 ~~ki~ilG~~~~GKStLi~~l~~~~-~~~~~~T~~~~~~-~i~~~~~~~~l~D~~G~~------~~~~~~~~~-----~~ 85 (190)
T cd00879 19 EAKILFLGLDNAGKTTLLHMLKDDR-LAQHVPTLHPTSE-ELTIGNIKFKTFDLGGHE------QARRLWKDY-----FP 85 (190)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCC-CcccCCccCcceE-EEEECCEEEEEEECCCCH------HHHHHHHHH-----hc
Confidence 4689999999999999999999863 2222222222221 222236788999999942 122333333 24
Q ss_pred ceeEEEEEEecCCc
Q 029512 172 FWSCTCFLIYIFYT 185 (192)
Q Consensus 172 ~~~~v~~vvD~s~~ 185 (192)
.++.+++|+|++++
T Consensus 86 ~ad~iilV~D~~~~ 99 (190)
T cd00879 86 EVDGIVFLVDAADP 99 (190)
T ss_pred cCCEEEEEEECCcH
Confidence 56899999999765
No 139
>cd04106 Rab23_lke Rab23-like subfamily. Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G
Probab=98.99 E-value=3.9e-09 Score=80.11 Aligned_cols=80 Identities=20% Similarity=0.189 Sum_probs=48.8
Q ss_pred eEEEEecCCCcHHHHHHHHhhccCceeecCCCCceeEE--EEEe-----eCCeEEEEECCCCCCCCChHHHHHHHHHHHh
Q 029512 94 EIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTI--NFFK-----LGTKLCLVDLPGYGFAYAKEEVKDAWEELVS 166 (192)
Q Consensus 94 ~i~lvG~~n~GKStlin~L~~~~~~~~~~~~~g~T~~~--~~~~-----~~~~~~lvDtPG~~~~~~~~~~~~~~~~~~~ 166 (192)
+|+++|.+|+|||||+|++++... . ....+..+.+. .... ....+.+|||||. +.....+..
T Consensus 2 kv~~vG~~~~GKTsl~~~~~~~~~-~-~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~D~~G~------~~~~~~~~~--- 70 (162)
T cd04106 2 KVIVVGNGNVGKSSMIQRFVKGIF-T-KDYKKTIGVDFLEKQIFLRQSDEDVRLMLWDTAGQ------EEFDAITKA--- 70 (162)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCC-C-CCCCCcEEEEEEEEEEEEcCCCCEEEEEEeeCCch------HHHHHhHHH---
Confidence 799999999999999999998631 1 11112122221 1111 1356899999993 212222222
Q ss_pred hhccCceeEEEEEEecCCce
Q 029512 167 ISYRNFWSCTCFLIYIFYTN 186 (192)
Q Consensus 167 l~~~~~~~~v~~vvD~s~~~ 186 (192)
..+.++.+++|.|+++++
T Consensus 71 --~~~~~~~~v~v~d~~~~~ 88 (162)
T cd04106 71 --YYRGAQACILVFSTTDRE 88 (162)
T ss_pred --HhcCCCEEEEEEECCCHH
Confidence 234678888998887654
No 140
>cd04150 Arf1_5_like Arf1-Arf5-like subfamily. This subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents
Probab=98.99 E-value=4.1e-09 Score=80.79 Aligned_cols=80 Identities=16% Similarity=0.197 Sum_probs=51.9
Q ss_pred eEEEEecCCCcHHHHHHHHhhccCceeecCCCCceeEEEEEeeCCeEEEEECCCCCCCCChHHHHHHHHHHHhhhccCce
Q 029512 94 EIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVSISYRNFW 173 (192)
Q Consensus 94 ~i~lvG~~n~GKStlin~L~~~~~~~~~~~~~g~T~~~~~~~~~~~~~lvDtPG~~~~~~~~~~~~~~~~~~~l~~~~~~ 173 (192)
+|+++|.+|||||||++++.... .....++.|.... ........+.+|||||.. .....|..+ .+.+
T Consensus 2 kv~~~G~~~~GKTsli~~l~~~~-~~~~~pt~g~~~~-~~~~~~~~~~l~D~~G~~------~~~~~~~~~-----~~~a 68 (159)
T cd04150 2 RILMVGLDAAGKTTILYKLKLGE-IVTTIPTIGFNVE-TVEYKNISFTVWDVGGQD------KIRPLWRHY-----FQNT 68 (159)
T ss_pred EEEEECCCCCCHHHHHHHHhcCC-CcccCCCCCcceE-EEEECCEEEEEEECCCCH------hHHHHHHHH-----hcCC
Confidence 78999999999999999996542 2222222232221 112236779999999963 222334333 3568
Q ss_pred eEEEEEEecCCce
Q 029512 174 SCTCFLIYIFYTN 186 (192)
Q Consensus 174 ~~v~~vvD~s~~~ 186 (192)
|++++|+|++.++
T Consensus 69 d~~i~v~D~~~~~ 81 (159)
T cd04150 69 QGLIFVVDSNDRE 81 (159)
T ss_pred CEEEEEEeCCCHH
Confidence 9999999997653
No 141
>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process
Probab=98.99 E-value=1.4e-09 Score=82.63 Aligned_cols=76 Identities=22% Similarity=0.265 Sum_probs=53.5
Q ss_pred CeEEEEecCCCcHHHHHHHHhhccCceeecCCCCceeEEEEEeeCCeEEEEECCC-CCCCCChHHHHHHHHHHHhhhccC
Q 029512 93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPG-YGFAYAKEEVKDAWEELVSISYRN 171 (192)
Q Consensus 93 ~~i~lvG~~n~GKStlin~L~~~~~~~~~~~~~g~T~~~~~~~~~~~~~lvDtPG-~~~~~~~~~~~~~~~~~~~l~~~~ 171 (192)
.+|+++|++|+|||||+++|.+.. . ....|+.+.+.. .++|||| |... - .....+ +....
T Consensus 2 krimliG~~g~GKTTL~q~L~~~~--~----~~~KTq~i~~~~-----~~IDTPGEyiE~---~---~~y~aL--i~ta~ 62 (143)
T PF10662_consen 2 KRIMLIGPSGSGKTTLAQALNGEE--I----RYKKTQAIEYYD-----NTIDTPGEYIEN---P---RFYHAL--IVTAQ 62 (143)
T ss_pred ceEEEECCCCCCHHHHHHHHcCCC--C----CcCccceeEecc-----cEEECChhheeC---H---HHHHHH--HHHHh
Confidence 489999999999999999999963 1 234566666543 4599999 3321 1 122233 33456
Q ss_pred ceeEEEEEEecCCceE
Q 029512 172 FWSCTCFLIYIFYTNV 187 (192)
Q Consensus 172 ~~~~v~~vvD~s~~~~ 187 (192)
++|.|++|.|++.+..
T Consensus 63 dad~V~ll~dat~~~~ 78 (143)
T PF10662_consen 63 DADVVLLLQDATEPRS 78 (143)
T ss_pred hCCEEEEEecCCCCCc
Confidence 7899999999988754
No 142
>PF00350 Dynamin_N: Dynamin family; InterPro: IPR001401 Membrane transport between compartments in eukaryotic cells requires proteins that allow the budding and scission of nascent cargo vesicles from one compartment and their targeting and fusion with another. Dynamins are large GTPases that belong to a protein superfamily [] that, in eukaryotic cells, includes classical dynamins, dynamin-like proteins, OPA1, Mx proteins, mitofusins and guanylate-binding proteins/atlastins [, , , ], and are involved in the scission of a wide range of vesicles and organelles. They play a role in many processes including budding of transport vesicles, division of organelles, cytokinesis and pathogen resistance. The minimal distinguishing architectural features that are common to all dynamins and are distinct from other GTPases are the structure of the large GTPase domain (300 amino acids) and the presence of two additional domains; the middle domain and the GTPase effector domain (GED), which are involved in oligomerization and regulation of the GTPase activity. This entry represents the GTPase domain, containing the GTP-binding motifs that are needed for guanine-nucleotide binding and hydrolysis. The conservation of these motifs is absolute except for the the final motif in guanylate-binding proteins. The GTPase catalytic activity can be stimulated by oligomerisation of the protein, which is mediated by interactions between the GTPase domain, the middle domain and the GED.; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1JWY_B 1JX2_B 3ZVR_A 2AKA_B 3L43_B 2X2F_D 2X2E_D 3SNH_A 3ZYS_D 3ZYC_D ....
Probab=98.99 E-value=7.6e-10 Score=85.09 Aligned_cols=21 Identities=38% Similarity=0.626 Sum_probs=20.1
Q ss_pred EEEEecCCCcHHHHHHHHhhc
Q 029512 95 IAFAGRSNVGKSSMLNALTRQ 115 (192)
Q Consensus 95 i~lvG~~n~GKStlin~L~~~ 115 (192)
|+++|..++|||||||+|+|.
T Consensus 1 V~v~G~~ssGKSTliNaLlG~ 21 (168)
T PF00350_consen 1 VAVVGQFSSGKSTLINALLGR 21 (168)
T ss_dssp EEEEEBTTSSHHHHHHHHHTS
T ss_pred CEEEcCCCCCHHHHHHHHHhc
Confidence 689999999999999999997
No 143
>cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date.
Probab=98.99 E-value=2.6e-09 Score=82.35 Aligned_cols=81 Identities=15% Similarity=0.253 Sum_probs=52.3
Q ss_pred eEEEEecCCCcHHHHHHHHhhccCceeecCCCCceeEEEEEeeCCeEEEEECCCCCCCCChHHHHHHHHHHHhhhccCce
Q 029512 94 EIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVSISYRNFW 173 (192)
Q Consensus 94 ~i~lvG~~n~GKStlin~L~~~~~~~~~~~~~g~T~~~~~~~~~~~~~lvDtPG~~~~~~~~~~~~~~~~~~~l~~~~~~ 173 (192)
.|+++|.+|||||||++.+.+........+..|... ......+..+.+|||||-.. ....|..+ .+.+
T Consensus 1 ~i~ivG~~~vGKTsli~~~~~~~~~~~~~pt~g~~~-~~i~~~~~~l~i~Dt~G~~~------~~~~~~~~-----~~~a 68 (164)
T cd04162 1 QILVLGLDGAGKTSLLHSLSSERSLESVVPTTGFNS-VAIPTQDAIMELLEIGGSQN------LRKYWKRY-----LSGS 68 (164)
T ss_pred CEEEECCCCCCHHHHHHHHhcCCCcccccccCCcce-EEEeeCCeEEEEEECCCCcc------hhHHHHHH-----HhhC
Confidence 478999999999999999997632222222333221 12223367799999999532 22334333 3467
Q ss_pred eEEEEEEecCCce
Q 029512 174 SCTCFLIYIFYTN 186 (192)
Q Consensus 174 ~~v~~vvD~s~~~ 186 (192)
|++++|+|++++.
T Consensus 69 d~ii~V~D~t~~~ 81 (164)
T cd04162 69 QGLIFVVDSADSE 81 (164)
T ss_pred CEEEEEEECCCHH
Confidence 9999999987753
No 144
>PTZ00133 ADP-ribosylation factor; Provisional
Probab=98.99 E-value=4.1e-09 Score=82.83 Aligned_cols=82 Identities=18% Similarity=0.206 Sum_probs=53.5
Q ss_pred CCeEEEEecCCCcHHHHHHHHhhccCceeecCCCCceeEEEEEeeCCeEEEEECCCCCCCCChHHHHHHHHHHHhhhccC
Q 029512 92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVSISYRN 171 (192)
Q Consensus 92 ~~~i~lvG~~n~GKStlin~L~~~~~~~~~~~~~g~T~~~~~~~~~~~~~lvDtPG~~~~~~~~~~~~~~~~~~~l~~~~ 171 (192)
..+|+++|.+|||||||++.+... ......++.|.... .....+..+.+|||||.. .....|..+ .+
T Consensus 17 ~~kv~lvG~~~vGKTsli~~~~~~-~~~~~~~T~~~~~~-~~~~~~~~~~l~D~~G~~------~~~~~~~~~-----~~ 83 (182)
T PTZ00133 17 EVRILMVGLDAAGKTTILYKLKLG-EVVTTIPTIGFNVE-TVEYKNLKFTMWDVGGQD------KLRPLWRHY-----YQ 83 (182)
T ss_pred ccEEEEEcCCCCCHHHHHHHHhcC-CccccCCccccceE-EEEECCEEEEEEECCCCH------hHHHHHHHH-----hc
Confidence 368999999999999999999754 22222223332222 112246789999999952 223334333 34
Q ss_pred ceeEEEEEEecCCce
Q 029512 172 FWSCTCFLIYIFYTN 186 (192)
Q Consensus 172 ~~~~v~~vvD~s~~~ 186 (192)
.+|++++|+|+++++
T Consensus 84 ~ad~iI~v~D~t~~~ 98 (182)
T PTZ00133 84 NTNGLIFVVDSNDRE 98 (182)
T ss_pred CCCEEEEEEeCCCHH
Confidence 689999999997653
No 145
>smart00177 ARF ARF-like small GTPases; ARF, ADP-ribosylation factor. Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop).
Probab=98.98 E-value=4.4e-09 Score=81.92 Aligned_cols=82 Identities=16% Similarity=0.186 Sum_probs=53.0
Q ss_pred CCeEEEEecCCCcHHHHHHHHhhccCceeecCCCCceeEEEEEeeCCeEEEEECCCCCCCCChHHHHHHHHHHHhhhccC
Q 029512 92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVSISYRN 171 (192)
Q Consensus 92 ~~~i~lvG~~n~GKStlin~L~~~~~~~~~~~~~g~T~~~~~~~~~~~~~lvDtPG~~~~~~~~~~~~~~~~~~~l~~~~ 171 (192)
..+|+++|.+|+|||||++.+... ......++.|.... ........+.+|||||.. .....|..+ .+
T Consensus 13 ~~ki~l~G~~~~GKTsL~~~~~~~-~~~~~~~t~~~~~~-~~~~~~~~l~l~D~~G~~------~~~~~~~~~-----~~ 79 (175)
T smart00177 13 EMRILMVGLDAAGKTTILYKLKLG-ESVTTIPTIGFNVE-TVTYKNISFTVWDVGGQD------KIRPLWRHY-----YT 79 (175)
T ss_pred ccEEEEEcCCCCCHHHHHHHHhcC-CCCCcCCccccceE-EEEECCEEEEEEECCCCh------hhHHHHHHH-----hC
Confidence 469999999999999999999654 22222122222111 111236779999999952 223344443 35
Q ss_pred ceeEEEEEEecCCce
Q 029512 172 FWSCTCFLIYIFYTN 186 (192)
Q Consensus 172 ~~~~v~~vvD~s~~~ 186 (192)
.+|++++|+|+++++
T Consensus 80 ~ad~ii~v~D~t~~~ 94 (175)
T smart00177 80 NTQGLIFVVDSNDRD 94 (175)
T ss_pred CCCEEEEEEECCCHH
Confidence 689999999998764
No 146
>cd04158 ARD1 ARD1 subfamily. ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membra
Probab=98.98 E-value=2.9e-09 Score=82.29 Aligned_cols=77 Identities=17% Similarity=0.204 Sum_probs=50.9
Q ss_pred eEEEEecCCCcHHHHHHHHhhccCceeecCCCCceeEEE---EEeeCCeEEEEECCCCCCCCChHHHHHHHHHHHhhhcc
Q 029512 94 EIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTIN---FFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVSISYR 170 (192)
Q Consensus 94 ~i~lvG~~n~GKStlin~L~~~~~~~~~~~~~g~T~~~~---~~~~~~~~~lvDtPG~~~~~~~~~~~~~~~~~~~l~~~ 170 (192)
+|+++|.+|||||||+|++.+. ... . ...|.... ....+..+.+|||||... ....|..+ .
T Consensus 1 ~vvlvG~~~~GKTsl~~~l~~~-~~~--~--~~~T~~~~~~~~~~~~~~i~l~Dt~G~~~------~~~~~~~~-----~ 64 (169)
T cd04158 1 RVVTLGLDGAGKTTILFKLKQD-EFM--Q--PIPTIGFNVETVEYKNLKFTIWDVGGKHK------LRPLWKHY-----Y 64 (169)
T ss_pred CEEEECCCCCCHHHHHHHHhcC-CCC--C--cCCcCceeEEEEEECCEEEEEEECCCChh------cchHHHHH-----h
Confidence 4789999999999999999986 222 2 12222221 222367899999999642 12233332 2
Q ss_pred CceeEEEEEEecCCce
Q 029512 171 NFWSCTCFLIYIFYTN 186 (192)
Q Consensus 171 ~~~~~v~~vvD~s~~~ 186 (192)
+.+|.+++|+|+++++
T Consensus 65 ~~ad~ii~V~D~s~~~ 80 (169)
T cd04158 65 LNTQAVVFVVDSSHRD 80 (169)
T ss_pred ccCCEEEEEEeCCcHH
Confidence 4679999999987763
No 147
>KOG2655 consensus Septin family protein (P-loop GTPase) [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.98 E-value=1.1e-09 Score=94.26 Aligned_cols=100 Identities=20% Similarity=0.179 Sum_probs=56.3
Q ss_pred CCCCeEEEEecCCCcHHHHHHHHhhccCcee-----ecCCCCceeEEEEEe-------eCCeEEEEECCCCCCCCChHHH
Q 029512 90 PDLPEIAFAGRSNVGKSSMLNALTRQWGVVR-----TSDKPGLTQTINFFK-------LGTKLCLVDLPGYGFAYAKEEV 157 (192)
Q Consensus 90 ~~~~~i~lvG~~n~GKStlin~L~~~~~~~~-----~~~~~g~T~~~~~~~-------~~~~~~lvDtPG~~~~~~~~~~ 157 (192)
.-.++++++|.+|.|||||||+|++..-... ....+..|....... ...++.++||||||+....+..
T Consensus 19 G~~ftlmvvG~sGlGKsTfiNsLf~~~l~~~~~~~~~~~~~~~t~~i~~~~~~iee~g~~l~LtvidtPGfGD~vdns~~ 98 (366)
T KOG2655|consen 19 GFDFTLMVVGESGLGKSTFINSLFLTDLSGNREVPGASERIKETVEIESTKVEIEENGVKLNLTVIDTPGFGDAVDNSNC 98 (366)
T ss_pred CCceEEEEecCCCccHHHHHHHHHhhhccCCcccCCcccCccccceeeeeeeeecCCCeEEeeEEeccCCCccccccccc
Confidence 3467999999999999999999998731111 111121232222111 1356899999999986555433
Q ss_pred HHHHHHHHh------hhccCceeEEEEEEecCCceEEEEeC
Q 029512 158 KDAWEELVS------ISYRNFWSCTCFLIYIFYTNVIILYF 192 (192)
Q Consensus 158 ~~~~~~~~~------l~~~~~~~~v~~vvD~s~~~~~~~~~ 192 (192)
.+.+..+++ +.+...+++ --..| ...|+| |||
T Consensus 99 w~pi~~yi~~q~~~yl~~E~~~~R-~~~~D-~RVH~c-LYF 136 (366)
T KOG2655|consen 99 WRPIVNYIDSQFDQYLDEESRLNR-SKIKD-NRVHCC-LYF 136 (366)
T ss_pred chhhhHHHHHHHHHHHhhhccCCc-ccccC-CceEEE-EEE
Confidence 333333333 333344444 33333 445666 444
No 148
>PTZ00369 Ras-like protein; Provisional
Probab=98.98 E-value=3.4e-09 Score=83.47 Aligned_cols=84 Identities=11% Similarity=-0.023 Sum_probs=51.8
Q ss_pred CCeEEEEecCCCcHHHHHHHHhhccCceeecCCCCceeEEEEEe--eCCeEEEEECCCCCCCCChHHHHHHHHHHHhhhc
Q 029512 92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFK--LGTKLCLVDLPGYGFAYAKEEVKDAWEELVSISY 169 (192)
Q Consensus 92 ~~~i~lvG~~n~GKStlin~L~~~~~~~~~~~~~g~T~~~~~~~--~~~~~~lvDtPG~~~~~~~~~~~~~~~~~~~l~~ 169 (192)
..+|+++|.+|||||||++++.+........+..+.+....... ....+.+|||||... ....+..+
T Consensus 5 ~~Ki~iiG~~~~GKTsLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~------~~~l~~~~----- 73 (189)
T PTZ00369 5 EYKLVVVGGGGVGKSALTIQFIQNHFIDEYDPTIEDSYRKQCVIDEETCLLDILDTAGQEE------YSAMRDQY----- 73 (189)
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCCcCcCCchhhEEEEEEEECCEEEEEEEEeCCCCcc------chhhHHHH-----
Confidence 46999999999999999999998632122222223222211111 234577899999532 11223222
Q ss_pred cCceeEEEEEEecCCce
Q 029512 170 RNFWSCTCFLIYIFYTN 186 (192)
Q Consensus 170 ~~~~~~v~~vvD~s~~~ 186 (192)
.+.++++++|+|+++++
T Consensus 74 ~~~~d~iilv~D~s~~~ 90 (189)
T PTZ00369 74 MRTGQGFLCVYSITSRS 90 (189)
T ss_pred hhcCCEEEEEEECCCHH
Confidence 23678899999987764
No 149
>cd01893 Miro1 Miro1 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=98.97 E-value=2.1e-09 Score=82.67 Aligned_cols=82 Identities=16% Similarity=0.135 Sum_probs=50.8
Q ss_pred eEEEEecCCCcHHHHHHHHhhccCceeecC-CCCceeEEEEEeeCCeEEEEECCCCCCCCChHHHHHHHHHHHhhhccCc
Q 029512 94 EIAFAGRSNVGKSSMLNALTRQWGVVRTSD-KPGLTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVSISYRNF 172 (192)
Q Consensus 94 ~i~lvG~~n~GKStlin~L~~~~~~~~~~~-~~g~T~~~~~~~~~~~~~lvDtPG~~~~~~~~~~~~~~~~~~~l~~~~~ 172 (192)
+|+++|.+|||||||+|++.+......... .+.+|...........+.+|||||.... ...+.. ....
T Consensus 2 kv~ivG~~~vGKTsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~------~~~~~~-----~~~~ 70 (166)
T cd01893 2 RIVLIGDEGVGKSSLIMSLVSEEFPENVPRVLPEITIPADVTPERVPTTIVDTSSRPQD------RANLAA-----EIRK 70 (166)
T ss_pred EEEEECCCCCCHHHHHHHHHhCcCCccCCCcccceEeeeeecCCeEEEEEEeCCCchhh------hHHHhh-----hccc
Confidence 789999999999999999998632111111 1122322222223567899999996421 111211 1256
Q ss_pred eeEEEEEEecCCce
Q 029512 173 WSCTCFLIYIFYTN 186 (192)
Q Consensus 173 ~~~v~~vvD~s~~~ 186 (192)
+|++++|+|+++++
T Consensus 71 ad~~ilv~d~~~~~ 84 (166)
T cd01893 71 ANVICLVYSVDRPS 84 (166)
T ss_pred CCEEEEEEECCCHH
Confidence 78899999987754
No 150
>cd01890 LepA LepA subfamily. LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype.
Probab=98.97 E-value=3.2e-09 Score=82.10 Aligned_cols=81 Identities=16% Similarity=0.117 Sum_probs=50.3
Q ss_pred eEEEEecCCCcHHHHHHHHhhccCc-------eeec------CCCCceeEEEEEe--------eCCeEEEEECCCCCCCC
Q 029512 94 EIAFAGRSNVGKSSMLNALTRQWGV-------VRTS------DKPGLTQTINFFK--------LGTKLCLVDLPGYGFAY 152 (192)
Q Consensus 94 ~i~lvG~~n~GKStlin~L~~~~~~-------~~~~------~~~g~T~~~~~~~--------~~~~~~lvDtPG~~~~~ 152 (192)
+|+++|.+|+|||||+|+|++.... .... ...|+|....... .+..+.+|||||...
T Consensus 2 ni~~vG~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~-- 79 (179)
T cd01890 2 NFSIIAHIDHGKSTLADRLLELTGTVSKREMKEQVLDSMDLERERGITIKAQTVRLNYKAKDGQEYLLNLIDTPGHVD-- 79 (179)
T ss_pred cEEEEeecCCCHHHHHHHHHHHhCCCCcCCCceEeccCChhHHHCCCeEecceEEEEEecCCCCcEEEEEEECCCChh--
Confidence 6899999999999999999974210 0000 1224444332111 245688999999743
Q ss_pred ChHHHHHHHHHHHhhhccCceeEEEEEEecCCc
Q 029512 153 AKEEVKDAWEELVSISYRNFWSCTCFLIYIFYT 185 (192)
Q Consensus 153 ~~~~~~~~~~~~~~l~~~~~~~~v~~vvD~s~~ 185 (192)
....+... .+.+|++++|+|++..
T Consensus 80 ----~~~~~~~~-----~~~ad~~i~v~D~~~~ 103 (179)
T cd01890 80 ----FSYEVSRS-----LAACEGALLLVDATQG 103 (179)
T ss_pred ----hHHHHHHH-----HHhcCeEEEEEECCCC
Confidence 11122221 2357999999999764
No 151
>cd04110 Rab35 Rab35 subfamily. Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is
Probab=98.97 E-value=6.9e-09 Score=82.52 Aligned_cols=84 Identities=18% Similarity=0.096 Sum_probs=51.3
Q ss_pred CCeEEEEecCCCcHHHHHHHHhhccCceeecCCCCceeEEEEEee---CCeEEEEECCCCCCCCChHHHHHHHHHHHhhh
Q 029512 92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKL---GTKLCLVDLPGYGFAYAKEEVKDAWEELVSIS 168 (192)
Q Consensus 92 ~~~i~lvG~~n~GKStlin~L~~~~~~~~~~~~~g~T~~~~~~~~---~~~~~lvDtPG~~~~~~~~~~~~~~~~~~~l~ 168 (192)
..+|+++|.+|||||||++.+.+.........+.+.......... ...+.||||||-. .....+..+
T Consensus 6 ~~kivvvG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~G~~------~~~~~~~~~---- 75 (199)
T cd04110 6 LFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGERVKLQIWDTAGQE------RFRTITSTY---- 75 (199)
T ss_pred eeEEEEECCCCCCHHHHHHHHhcCCCCCCcCccccceeEEEEEEECCEEEEEEEEeCCCch------hHHHHHHHH----
Confidence 569999999999999999999986311111222222221122221 2468899999942 111222222
Q ss_pred ccCceeEEEEEEecCCce
Q 029512 169 YRNFWSCTCFLIYIFYTN 186 (192)
Q Consensus 169 ~~~~~~~v~~vvD~s~~~ 186 (192)
.+.++++++|+|+++++
T Consensus 76 -~~~a~~iilv~D~~~~~ 92 (199)
T cd04110 76 -YRGTHGVIVVYDVTNGE 92 (199)
T ss_pred -hCCCcEEEEEEECCCHH
Confidence 34578899999987654
No 152
>cd04107 Rab32_Rab38 Rab38/Rab32 subfamily. Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=98.97 E-value=4.6e-09 Score=83.52 Aligned_cols=82 Identities=12% Similarity=0.094 Sum_probs=49.8
Q ss_pred eEEEEecCCCcHHHHHHHHhhccCceeecCCCCceeEEEEEee----CCeEEEEECCCCCCCCChHHHHHHHHHHHhhhc
Q 029512 94 EIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKL----GTKLCLVDLPGYGFAYAKEEVKDAWEELVSISY 169 (192)
Q Consensus 94 ~i~lvG~~n~GKStlin~L~~~~~~~~~~~~~g~T~~~~~~~~----~~~~~lvDtPG~~~~~~~~~~~~~~~~~~~l~~ 169 (192)
+|+++|.+|||||||+|++++........++.+.......... ...+.+|||||-. .....+..+
T Consensus 2 KivivG~~~vGKTsli~~l~~~~~~~~~~~t~~~d~~~~~v~~~~~~~~~l~l~Dt~G~~------~~~~~~~~~----- 70 (201)
T cd04107 2 KVLVIGDLGVGKTSIIKRYVHGIFSQHYKATIGVDFALKVIEWDPNTVVRLQLWDIAGQE------RFGGMTRVY----- 70 (201)
T ss_pred EEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEECCCCEEEEEEEECCCch------hhhhhHHHH-----
Confidence 7899999999999999999986311111111111111122222 2458899999952 122223222
Q ss_pred cCceeEEEEEEecCCce
Q 029512 170 RNFWSCTCFLIYIFYTN 186 (192)
Q Consensus 170 ~~~~~~v~~vvD~s~~~ 186 (192)
.++++++++|+|.++++
T Consensus 71 ~~~a~~~ilv~D~t~~~ 87 (201)
T cd04107 71 YRGAVGAIIVFDVTRPS 87 (201)
T ss_pred hCCCCEEEEEEECCCHH
Confidence 35779999999988653
No 153
>COG5019 CDC3 Septin family protein [Cell division and chromosome partitioning / Cytoskeleton]
Probab=98.96 E-value=1.9e-09 Score=92.45 Aligned_cols=100 Identities=19% Similarity=0.217 Sum_probs=58.9
Q ss_pred CCCCeEEEEecCCCcHHHHHHHHhhccCceee----cCCCC---ceeEEEEEe-------eCCeEEEEECCCCCCCCChH
Q 029512 90 PDLPEIAFAGRSNVGKSSMLNALTRQWGVVRT----SDKPG---LTQTINFFK-------LGTKLCLVDLPGYGFAYAKE 155 (192)
Q Consensus 90 ~~~~~i~lvG~~n~GKStlin~L~~~~~~~~~----~~~~g---~T~~~~~~~-------~~~~~~lvDtPG~~~~~~~~ 155 (192)
.-..+|+++|.+|.||||++|+|++.. .... ...+. .|....... ....+.++||||||+....+
T Consensus 21 Gi~f~im~~G~sG~GKttfiNtL~~~~-l~~~~~~~~~~~~~~~~~~~i~~~~~~l~e~~~~~~l~vIDtpGfGD~idNs 99 (373)
T COG5019 21 GIDFTIMVVGESGLGKTTFINTLFGTS-LVDETEIDDIRAEGTSPTLEIKITKAELEEDGFHLNLTVIDTPGFGDFIDNS 99 (373)
T ss_pred CCceEEEEecCCCCchhHHHHhhhHhh-ccCCCCccCcccccCCcceEEEeeeeeeecCCeEEEEEEeccCCcccccccc
Confidence 346799999999999999999999973 1111 11111 222222211 13578999999999865554
Q ss_pred HHHHHHHHHHh------hhccCceeEEEEEEecCCceEEEEeC
Q 029512 156 EVKDAWEELVS------ISYRNFWSCTCFLIYIFYTNVIILYF 192 (192)
Q Consensus 156 ~~~~~~~~~~~------l~~~~~~~~v~~vvD~s~~~~~~~~~ 192 (192)
...+.+..+++ |.+....++--...| ...|+| |||
T Consensus 100 ~~we~I~~yI~~q~d~yl~~E~~~~R~~~~~D-~RVH~c-LYF 140 (373)
T COG5019 100 KCWEPIVDYIDDQFDQYLDEEQKIKRNPKFKD-TRVHAC-LYF 140 (373)
T ss_pred ccHHHHHHHHHHHHHHHHHHhhcccccccccc-CceEEE-EEE
Confidence 43333333333 444444555444555 455666 444
No 154
>cd04123 Rab21 Rab21 subfamily. The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site
Probab=98.96 E-value=8.4e-09 Score=77.81 Aligned_cols=80 Identities=11% Similarity=0.082 Sum_probs=49.4
Q ss_pred eEEEEecCCCcHHHHHHHHhhccCceeecCCCCceeEE--EEEe---eCCeEEEEECCCCCCCCChHHHHHHHHHHHhhh
Q 029512 94 EIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTI--NFFK---LGTKLCLVDLPGYGFAYAKEEVKDAWEELVSIS 168 (192)
Q Consensus 94 ~i~lvG~~n~GKStlin~L~~~~~~~~~~~~~g~T~~~--~~~~---~~~~~~lvDtPG~~~~~~~~~~~~~~~~~~~l~ 168 (192)
+|+++|++|+|||||+|++++.. ... ...+.++... .... ....+.+|||||-. .....+..+
T Consensus 2 ki~i~G~~~~GKStli~~l~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~------~~~~~~~~~---- 69 (162)
T cd04123 2 KVVLLGEGRVGKTSLVLRYVENK-FNE-KHESTTQASFFQKTVNIGGKRIDLAIWDTAGQE------RYHALGPIY---- 69 (162)
T ss_pred EEEEECCCCCCHHHHHHHHHhCC-CCC-CcCCccceeEEEEEEEECCEEEEEEEEECCchH------HHHHhhHHH----
Confidence 78999999999999999999873 221 1111111111 1111 12468999999931 112222222
Q ss_pred ccCceeEEEEEEecCCce
Q 029512 169 YRNFWSCTCFLIYIFYTN 186 (192)
Q Consensus 169 ~~~~~~~v~~vvD~s~~~ 186 (192)
..++|++++|+|+++++
T Consensus 70 -~~~~~~~i~v~d~~~~~ 86 (162)
T cd04123 70 -YRDADGAILVYDITDAD 86 (162)
T ss_pred -hccCCEEEEEEECCCHH
Confidence 24679999999987764
No 155
>TIGR00231 small_GTP small GTP-binding protein domain. This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.
Probab=98.95 E-value=3.8e-09 Score=78.26 Aligned_cols=54 Identities=37% Similarity=0.457 Sum_probs=41.9
Q ss_pred CeEEEEecCCCcHHHHHHHHhhccCceeecCCCCceeEEEE--Ee-eC--CeEEEEECCCC
Q 029512 93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINF--FK-LG--TKLCLVDLPGY 148 (192)
Q Consensus 93 ~~i~lvG~~n~GKStlin~L~~~~~~~~~~~~~g~T~~~~~--~~-~~--~~~~lvDtPG~ 148 (192)
.+|+++|.+|+|||||+|+|++.. ......+++|.+... .. .+ ..+.+|||||.
T Consensus 2 ~ki~~~G~~~~GKstl~~~l~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~ 60 (161)
T TIGR00231 2 IKIVIVGDPNVGKSTLLNRLLGNK--FITEYKPGTTRNYVTTVIEEDGKTYKFNLLDTAGQ 60 (161)
T ss_pred eEEEEECCCCCCHHHHHHHHhCCC--CcCcCCCCceeeeeEEEEEECCEEEEEEEEECCCc
Confidence 589999999999999999999974 555666677766543 22 23 57899999994
No 156
>cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine
Probab=98.95 E-value=8.8e-09 Score=79.45 Aligned_cols=83 Identities=18% Similarity=0.144 Sum_probs=50.8
Q ss_pred CeEEEEecCCCcHHHHHHHHhhccCceeecCCCCceeEEEEEee---CCeEEEEECCCCCCCCChHHHH-HHHHHHHhhh
Q 029512 93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKL---GTKLCLVDLPGYGFAYAKEEVK-DAWEELVSIS 168 (192)
Q Consensus 93 ~~i~lvG~~n~GKStlin~L~~~~~~~~~~~~~g~T~~~~~~~~---~~~~~lvDtPG~~~~~~~~~~~-~~~~~~~~l~ 168 (192)
.+|+++|.+|+|||||++++++...........+.......... ...+.+|||||.. ... ..+..+
T Consensus 3 ~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~------~~~~~~~~~~---- 72 (170)
T cd04115 3 FKIIVIGDSNVGKTCLTYRFCAGRFPERTEATIGVDFRERTVEIDGERIKVQLWDTAGQE------RFRKSMVQHY---- 72 (170)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCCccccceeEEEEEEEEEECCeEEEEEEEeCCChH------HHHHhhHHHh----
Confidence 58999999999999999999976311111122221111111221 3578999999942 111 112222
Q ss_pred ccCceeEEEEEEecCCce
Q 029512 169 YRNFWSCTCFLIYIFYTN 186 (192)
Q Consensus 169 ~~~~~~~v~~vvD~s~~~ 186 (192)
.+++|++++|+|.+.+.
T Consensus 73 -~~~~d~~i~v~d~~~~~ 89 (170)
T cd04115 73 -YRNVHAVVFVYDVTNMA 89 (170)
T ss_pred -hcCCCEEEEEEECCCHH
Confidence 35689999999998754
No 157
>cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily. BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co
Probab=98.94 E-value=6e-09 Score=82.38 Aligned_cols=81 Identities=21% Similarity=0.219 Sum_probs=52.2
Q ss_pred CeEEEEecCCCcHHHHHHHHhhcc-Cceee-------------cCCCCceeEEE---EEeeCCeEEEEECCCCCCCCChH
Q 029512 93 PEIAFAGRSNVGKSSMLNALTRQW-GVVRT-------------SDKPGLTQTIN---FFKLGTKLCLVDLPGYGFAYAKE 155 (192)
Q Consensus 93 ~~i~lvG~~n~GKStlin~L~~~~-~~~~~-------------~~~~g~T~~~~---~~~~~~~~~lvDtPG~~~~~~~~ 155 (192)
.+|+++|.+|+|||||+|+|++.. ..... ....|+|.... ....+..+.+|||||...
T Consensus 3 r~i~ivG~~~~GKTsL~~~l~~~~~~~~~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~~~~~l~DtpG~~~----- 77 (194)
T cd01891 3 RNIAIIAHVDHGKTTLVDALLKQSGTFRENEEVEERVMDSNDLERERGITILAKNTAVTYKDTKINIVDTPGHAD----- 77 (194)
T ss_pred cEEEEEecCCCCHHHHHHHHHHHcCCCCccCcccccccccchhHHhcccccccceeEEEECCEEEEEEECCCcHH-----
Confidence 489999999999999999999731 11110 01234444432 223467899999999632
Q ss_pred HHHHHHHHHHhhhccCceeEEEEEEecCC
Q 029512 156 EVKDAWEELVSISYRNFWSCTCFLIYIFY 184 (192)
Q Consensus 156 ~~~~~~~~~~~l~~~~~~~~v~~vvD~s~ 184 (192)
....+.. ..+.+|++++|+|++.
T Consensus 78 -~~~~~~~-----~~~~~d~~ilV~d~~~ 100 (194)
T cd01891 78 -FGGEVER-----VLSMVDGVLLLVDASE 100 (194)
T ss_pred -HHHHHHH-----HHHhcCEEEEEEECCC
Confidence 1122222 2346799999999876
No 158
>cd04175 Rap1 Rap1 subgroup. The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the n
Probab=98.94 E-value=7.1e-09 Score=79.14 Aligned_cols=78 Identities=12% Similarity=0.001 Sum_probs=45.7
Q ss_pred CeEEEEecCCCcHHHHHHHHhhccCceeecCCCCceeEE---EEEee--CCeEEEEECCCCCCCCChHHHHHHHHHHHhh
Q 029512 93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTI---NFFKL--GTKLCLVDLPGYGFAYAKEEVKDAWEELVSI 167 (192)
Q Consensus 93 ~~i~lvG~~n~GKStlin~L~~~~~~~~~~~~~g~T~~~---~~~~~--~~~~~lvDtPG~~~~~~~~~~~~~~~~~~~l 167 (192)
.+|+++|.+|||||||+++++... .....+.++.+. ..... ...+.+|||||... ....+..+
T Consensus 2 ~ki~~~G~~~~GKTsli~~~~~~~---~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~------~~~~~~~~--- 69 (164)
T cd04175 2 YKLVVLGSGGVGKSALTVQFVQGI---FVEKYDPTIEDSYRKQVEVDGQQCMLEILDTAGTEQ------FTAMRDLY--- 69 (164)
T ss_pred cEEEEECCCCCCHHHHHHHHHhCC---CCcccCCcchheEEEEEEECCEEEEEEEEECCCccc------chhHHHHH---
Confidence 479999999999999999999652 222233333221 11112 34567999999532 11122222
Q ss_pred hccCceeEEEEEEecCC
Q 029512 168 SYRNFWSCTCFLIYIFY 184 (192)
Q Consensus 168 ~~~~~~~~v~~vvD~s~ 184 (192)
.+.+|++++|.|.+.
T Consensus 70 --~~~~d~~ilv~d~~~ 84 (164)
T cd04175 70 --MKNGQGFVLVYSITA 84 (164)
T ss_pred --HhhCCEEEEEEECCC
Confidence 124566777777654
No 159
>cd04109 Rab28 Rab28 subfamily. First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumbly the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs
Probab=98.94 E-value=8.3e-09 Score=83.05 Aligned_cols=79 Identities=15% Similarity=0.109 Sum_probs=49.9
Q ss_pred eEEEEecCCCcHHHHHHHHhhccCceeecCCCCceeEEE--EEee----CCeEEEEECCCCCCCCChHHHHHHHHHHHhh
Q 029512 94 EIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTIN--FFKL----GTKLCLVDLPGYGFAYAKEEVKDAWEELVSI 167 (192)
Q Consensus 94 ~i~lvG~~n~GKStlin~L~~~~~~~~~~~~~g~T~~~~--~~~~----~~~~~lvDtPG~~~~~~~~~~~~~~~~~~~l 167 (192)
+|+++|.+|||||||+|.+++.. +. ....+..+.+.. .... ...+.+|||||.. .....+..+
T Consensus 2 Ki~ivG~~~vGKSsLi~~l~~~~-~~-~~~~~T~~~d~~~~~i~~~~~~~~~~~i~Dt~G~~------~~~~l~~~~--- 70 (215)
T cd04109 2 KIVVLGDGAVGKTSLCRRFAKEG-FG-KSYKQTIGLDFFSKRVTLPGNLNVTLQVWDIGGQS------IGGKMLDKY--- 70 (215)
T ss_pred EEEEECcCCCCHHHHHHHHhcCC-CC-CCCCCceeEEEEEEEEEeCCCCEEEEEEEECCCcH------HHHHHHHHH---
Confidence 78999999999999999999863 11 111222222321 1111 3468899999932 112222222
Q ss_pred hccCceeEEEEEEecCCc
Q 029512 168 SYRNFWSCTCFLIYIFYT 185 (192)
Q Consensus 168 ~~~~~~~~v~~vvD~s~~ 185 (192)
.+.+|++++|+|++++
T Consensus 71 --~~~ad~iilV~D~t~~ 86 (215)
T cd04109 71 --IYGAHAVFLVYDVTNS 86 (215)
T ss_pred --hhcCCEEEEEEECCCH
Confidence 3578999999999875
No 160
>smart00173 RAS Ras subfamily of RAS small GTPases. Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades
Probab=98.94 E-value=5.8e-09 Score=79.41 Aligned_cols=78 Identities=13% Similarity=0.083 Sum_probs=47.7
Q ss_pred eEEEEecCCCcHHHHHHHHhhccCceeecCCCCceeEE--EEEee---CCeEEEEECCCCCCCCChHHHHHHHHHHHhhh
Q 029512 94 EIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTI--NFFKL---GTKLCLVDLPGYGFAYAKEEVKDAWEELVSIS 168 (192)
Q Consensus 94 ~i~lvG~~n~GKStlin~L~~~~~~~~~~~~~g~T~~~--~~~~~---~~~~~lvDtPG~~~~~~~~~~~~~~~~~~~l~ 168 (192)
+|+++|.+|||||||+|++.+.. . ......++.+. ..... ...+.+|||||.... ...+..+
T Consensus 2 ki~v~G~~~~GKTsli~~~~~~~-~--~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~------~~~~~~~---- 68 (164)
T smart00173 2 KLVVLGSGGVGKSALTIQFVQGH-F--VDDYDPTIEDSYRKQIEIDGEVCLLDILDTAGQEEF------SAMRDQY---- 68 (164)
T ss_pred EEEEECCCCCCHHHHHHHHHhCc-C--CcccCCchhhhEEEEEEECCEEEEEEEEECCCcccc------hHHHHHH----
Confidence 78999999999999999999863 2 22222222221 11111 346789999995321 1122222
Q ss_pred ccCceeEEEEEEecCCc
Q 029512 169 YRNFWSCTCFLIYIFYT 185 (192)
Q Consensus 169 ~~~~~~~v~~vvD~s~~ 185 (192)
.+.++.+++|.|+.++
T Consensus 69 -~~~~~~~i~v~d~~~~ 84 (164)
T smart00173 69 -MRTGEGFLLVYSITDR 84 (164)
T ss_pred -HhhCCEEEEEEECCCH
Confidence 2346888888888765
No 161
>cd04125 RabA_like RabA-like subfamily. RabA was first identified in D. discoideum, where its expression levels were compared to other Rabs in growing and developing cells. The RabA mRNA levels were below the level of detection by Northern blot analysis, suggesting a very low level of expression. The function of RabA remains unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=98.94 E-value=8.6e-09 Score=80.86 Aligned_cols=82 Identities=20% Similarity=0.145 Sum_probs=51.7
Q ss_pred CeEEEEecCCCcHHHHHHHHhhccCcee-ecCCCCceeEEEEEee---CCeEEEEECCCCCCCCChHHHHHHHHHHHhhh
Q 029512 93 PEIAFAGRSNVGKSSMLNALTRQWGVVR-TSDKPGLTQTINFFKL---GTKLCLVDLPGYGFAYAKEEVKDAWEELVSIS 168 (192)
Q Consensus 93 ~~i~lvG~~n~GKStlin~L~~~~~~~~-~~~~~g~T~~~~~~~~---~~~~~lvDtPG~~~~~~~~~~~~~~~~~~~l~ 168 (192)
.+|+++|.+|||||||+|++.+.. +.. ..+..+.+........ ...+.+|||||... ....+..
T Consensus 1 ~ki~v~G~~~vGKSsli~~~~~~~-~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~g~~~------~~~~~~~----- 68 (188)
T cd04125 1 FKVVIIGDYGVGKSSLLKRFTEDE-FSESTKSTIGVDFKIKTVYIENKIIKLQIWDTNGQER------FRSLNNS----- 68 (188)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC-CCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCcHH------HHhhHHH-----
Confidence 379999999999999999999873 221 2233333332222222 24578999999421 1112222
Q ss_pred ccCceeEEEEEEecCCce
Q 029512 169 YRNFWSCTCFLIYIFYTN 186 (192)
Q Consensus 169 ~~~~~~~v~~vvD~s~~~ 186 (192)
..+.+|++++|+|+++++
T Consensus 69 ~~~~~d~iilv~d~~~~~ 86 (188)
T cd04125 69 YYRGAHGYLLVYDVTDQE 86 (188)
T ss_pred HccCCCEEEEEEECcCHH
Confidence 235689999999987654
No 162
>cd04112 Rab26 Rab26 subfamily. First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=98.93 E-value=9.9e-09 Score=80.95 Aligned_cols=81 Identities=17% Similarity=0.169 Sum_probs=49.5
Q ss_pred eEEEEecCCCcHHHHHHHHhhccCceee--cCCCCceeEEEEEee---CCeEEEEECCCCCCCCChHHHHHHHHHHHhhh
Q 029512 94 EIAFAGRSNVGKSSMLNALTRQWGVVRT--SDKPGLTQTINFFKL---GTKLCLVDLPGYGFAYAKEEVKDAWEELVSIS 168 (192)
Q Consensus 94 ~i~lvG~~n~GKStlin~L~~~~~~~~~--~~~~g~T~~~~~~~~---~~~~~lvDtPG~~~~~~~~~~~~~~~~~~~l~ 168 (192)
+|+++|.+|+|||||++.+.+.. .... ....+.+........ ...+.||||||- +.....+..+
T Consensus 2 Ki~vvG~~~vGKTSli~~~~~~~-~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~------~~~~~~~~~~---- 70 (191)
T cd04112 2 KVMLLGDSGVGKTCLLVRFKDGA-FLNGNFIATVGIDFRNKVVTVDGVKVKLQIWDTAGQ------ERFRSVTHAY---- 70 (191)
T ss_pred EEEEECCCCCCHHHHHHHHhcCC-CCccCcCCcccceeEEEEEEECCEEEEEEEEeCCCc------HHHHHhhHHH----
Confidence 78999999999999999999863 2111 111121211112222 247899999993 2222222222
Q ss_pred ccCceeEEEEEEecCCce
Q 029512 169 YRNFWSCTCFLIYIFYTN 186 (192)
Q Consensus 169 ~~~~~~~v~~vvD~s~~~ 186 (192)
.+.+|++++|+|++.++
T Consensus 71 -~~~ad~~i~v~D~~~~~ 87 (191)
T cd04112 71 -YRDAHALLLLYDITNKA 87 (191)
T ss_pred -ccCCCEEEEEEECCCHH
Confidence 34678999999987653
No 163
>cd04142 RRP22 RRP22 subfamily. RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated.
Probab=98.93 E-value=7.4e-09 Score=82.66 Aligned_cols=88 Identities=15% Similarity=0.169 Sum_probs=52.7
Q ss_pred eEEEEecCCCcHHHHHHHHhhccCceeecCCCCceeEE--EEE-eeC--CeEEEEECCCCCCCCChHHHHHHHHHHHhhh
Q 029512 94 EIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTI--NFF-KLG--TKLCLVDLPGYGFAYAKEEVKDAWEELVSIS 168 (192)
Q Consensus 94 ~i~lvG~~n~GKStlin~L~~~~~~~~~~~~~g~T~~~--~~~-~~~--~~~~lvDtPG~~~~~~~~~~~~~~~~~~~l~ 168 (192)
+|+++|.+|||||||+|.+++.. ... ...|.++.+. ... ..+ ..+.+|||||...-... ..+.|... ...
T Consensus 2 kI~ivG~~~vGKTsLi~~~~~~~-f~~-~~~pt~~~~~~~~~i~~~~~~~~l~i~Dt~G~~~~~~~--~~~e~~~~-~~~ 76 (198)
T cd04142 2 RVAVLGAPGVGKTAIVRQFLAQE-FPE-EYIPTEHRRLYRPAVVLSGRVYDLHILDVPNMQRYPGT--AGQEWMDP-RFR 76 (198)
T ss_pred EEEEECCCCCcHHHHHHHHHcCC-CCc-ccCCccccccceeEEEECCEEEEEEEEeCCCcccCCcc--chhHHHHH-HHh
Confidence 78999999999999999999863 221 1122222221 111 123 46789999997531111 11122111 122
Q ss_pred ccCceeEEEEEEecCCce
Q 029512 169 YRNFWSCTCFLIYIFYTN 186 (192)
Q Consensus 169 ~~~~~~~v~~vvD~s~~~ 186 (192)
..+.+|++++|+|++.++
T Consensus 77 ~~~~ad~iilv~D~~~~~ 94 (198)
T cd04142 77 GLRNSRAFILVYDICSPD 94 (198)
T ss_pred hhccCCEEEEEEECCCHH
Confidence 346789999999998764
No 164
>cd04108 Rab36_Rab34 Rab34/Rab36 subfamily. Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further re
Probab=98.92 E-value=1.2e-08 Score=79.16 Aligned_cols=81 Identities=16% Similarity=0.154 Sum_probs=48.9
Q ss_pred eEEEEecCCCcHHHHHHHHhhccCceeecCCCCceeEEEEEe---eCCeEEEEECCCCCCCCChHHHHHHHHHHHhhhcc
Q 029512 94 EIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFK---LGTKLCLVDLPGYGFAYAKEEVKDAWEELVSISYR 170 (192)
Q Consensus 94 ~i~lvG~~n~GKStlin~L~~~~~~~~~~~~~g~T~~~~~~~---~~~~~~lvDtPG~~~~~~~~~~~~~~~~~~~l~~~ 170 (192)
+|+++|.+|||||||++++.+........+..+......... ....+.+|||||.. .....+. ...
T Consensus 2 ki~ivG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~------~~~~~~~-----~~~ 70 (170)
T cd04108 2 KVIVVGDLSVGKTCLINRFCKDVFDKNYKATIGVDFEMERFEILGVPFSLQLWDTAGQE------RFKCIAS-----TYY 70 (170)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEeCCChH------HHHhhHH-----HHh
Confidence 689999999999999999998631111112222121111111 13568999999952 1111221 123
Q ss_pred CceeEEEEEEecCCc
Q 029512 171 NFWSCTCFLIYIFYT 185 (192)
Q Consensus 171 ~~~~~v~~vvD~s~~ 185 (192)
+.+|++++|.|++++
T Consensus 71 ~~ad~~ilv~d~~~~ 85 (170)
T cd04108 71 RGAQAIIIVFDLTDV 85 (170)
T ss_pred cCCCEEEEEEECcCH
Confidence 467888999988764
No 165
>PF05049 IIGP: Interferon-inducible GTPase (IIGP); InterPro: IPR007743 Interferon-inducible GTPase (IIGP) is thought to play a role in in intracellular defence. IIGP is predominantly associated with the Golgi apparatus and also localizes to the endoplasmic reticulum and exerts a distinct role in IFN-induced intracellular membrane trafficking or processing [].; GO: 0005525 GTP binding, 0016817 hydrolase activity, acting on acid anhydrides, 0016020 membrane; PDB: 1TPZ_A 1TQD_A 1TQ6_A 1TQ2_B 1TQ4_A.
Probab=98.92 E-value=2.2e-09 Score=93.34 Aligned_cols=88 Identities=24% Similarity=0.143 Sum_probs=49.4
Q ss_pred CCeEEEEecCCCcHHHHHHHHhhccCceeecCCC---CceeEEEEEee--CCeEEEEECCCCCCCCChHHHHHHHHHHHh
Q 029512 92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKP---GLTQTINFFKL--GTKLCLVDLPGYGFAYAKEEVKDAWEELVS 166 (192)
Q Consensus 92 ~~~i~lvG~~n~GKStlin~L~~~~~~~~~~~~~---g~T~~~~~~~~--~~~~~lvDtPG~~~~~~~~~~~~~~~~~~~ 166 (192)
...|+++|.+|+|||||||+|.|-..-...+... .+|+++..|.. -+++.+||.||++.+..+ ..++++
T Consensus 35 ~l~IaV~G~sGsGKSSfINalrGl~~~d~~aA~tGv~etT~~~~~Y~~p~~pnv~lWDlPG~gt~~f~------~~~Yl~ 108 (376)
T PF05049_consen 35 PLNIAVTGESGSGKSSFINALRGLGHEDEGAAPTGVVETTMEPTPYPHPKFPNVTLWDLPGIGTPNFP------PEEYLK 108 (376)
T ss_dssp -EEEEEEESTTSSHHHHHHHHTT--TTSTTS--SSSHSCCTS-EEEE-SS-TTEEEEEE--GGGSS--------HHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHhCCCCCCcCcCCCCCCcCCCCCeeCCCCCCCCCeEEeCCCCCCCCCC------HHHHHH
Confidence 4599999999999999999998742111112222 36777766654 468999999999874321 112222
Q ss_pred hhccCceeEEEEEEecCCc
Q 029512 167 ISYRNFWSCTCFLIYIFYT 185 (192)
Q Consensus 167 l~~~~~~~~v~~vvD~s~~ 185 (192)
--.-...|.++++.+.+.+
T Consensus 109 ~~~~~~yD~fiii~s~rf~ 127 (376)
T PF05049_consen 109 EVKFYRYDFFIIISSERFT 127 (376)
T ss_dssp HTTGGG-SEEEEEESSS--
T ss_pred HccccccCEEEEEeCCCCc
Confidence 1123445788887776654
No 166
>cd04136 Rap_like Rap-like subfamily. The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.
Probab=98.92 E-value=7.7e-09 Score=78.45 Aligned_cols=79 Identities=11% Similarity=0.037 Sum_probs=47.3
Q ss_pred CeEEEEecCCCcHHHHHHHHhhccCceeecCCCCceeEE--EEEe-e--CCeEEEEECCCCCCCCChHHHHHHHHHHHhh
Q 029512 93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTI--NFFK-L--GTKLCLVDLPGYGFAYAKEEVKDAWEELVSI 167 (192)
Q Consensus 93 ~~i~lvG~~n~GKStlin~L~~~~~~~~~~~~~g~T~~~--~~~~-~--~~~~~lvDtPG~~~~~~~~~~~~~~~~~~~l 167 (192)
.+|+++|.+|||||||+|++.+.. . ......++.+. .... . ...+.+|||||... ....+..+
T Consensus 2 ~ki~i~G~~~vGKTsl~~~~~~~~-~--~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~------~~~~~~~~--- 69 (163)
T cd04136 2 YKVVVLGSGGVGKSALTVQFVQGI-F--VEKYDPTIEDSYRKQIEVDGQQCMLEILDTAGTEQ------FTAMRDLY--- 69 (163)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCC-C--CcccCCchhhhEEEEEEECCEEEEEEEEECCCccc------cchHHHHH---
Confidence 489999999999999999999763 1 22222222211 1111 2 24577899999532 11122222
Q ss_pred hccCceeEEEEEEecCCc
Q 029512 168 SYRNFWSCTCFLIYIFYT 185 (192)
Q Consensus 168 ~~~~~~~~v~~vvD~s~~ 185 (192)
.+.++++++|.|.+++
T Consensus 70 --~~~~~~~ilv~d~~~~ 85 (163)
T cd04136 70 --IKNGQGFVLVYSITSQ 85 (163)
T ss_pred --hhcCCEEEEEEECCCH
Confidence 2356777888877654
No 167
>cd04144 Ras2 Ras2 subfamily. The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=98.92 E-value=7.5e-09 Score=81.57 Aligned_cols=78 Identities=14% Similarity=0.072 Sum_probs=46.4
Q ss_pred eEEEEecCCCcHHHHHHHHhhccCceeecCCCCceeE---EEEEeeC--CeEEEEECCCCCCCCChHHHHHHHHHHHhhh
Q 029512 94 EIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQT---INFFKLG--TKLCLVDLPGYGFAYAKEEVKDAWEELVSIS 168 (192)
Q Consensus 94 ~i~lvG~~n~GKStlin~L~~~~~~~~~~~~~g~T~~---~~~~~~~--~~~~lvDtPG~~~~~~~~~~~~~~~~~~~l~ 168 (192)
+|+++|.+|||||||+|+++... +. ...+.++.+ ......+ ..+.+|||||... ....+..+
T Consensus 1 ki~ivG~~~vGKTsli~~l~~~~-f~--~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~------~~~~~~~~---- 67 (190)
T cd04144 1 KLVVLGDGGVGKTALTIQLCLNH-FV--ETYDPTIEDSYRKQVVVDGQPCMLEVLDTAGQEE------YTALRDQW---- 67 (190)
T ss_pred CEEEECCCCCCHHHHHHHHHhCC-CC--ccCCCchHhhEEEEEEECCEEEEEEEEECCCchh------hHHHHHHH----
Confidence 48999999999999999999752 22 222222211 1111123 3588999999421 11122222
Q ss_pred ccCceeEEEEEEecCCc
Q 029512 169 YRNFWSCTCFLIYIFYT 185 (192)
Q Consensus 169 ~~~~~~~v~~vvD~s~~ 185 (192)
.+.+|++++|.|.+++
T Consensus 68 -~~~ad~~ilv~d~~~~ 83 (190)
T cd04144 68 -IREGEGFILVYSITSR 83 (190)
T ss_pred -HHhCCEEEEEEECCCH
Confidence 2356788888887665
No 168
>PLN03110 Rab GTPase; Provisional
Probab=98.91 E-value=1.2e-08 Score=82.26 Aligned_cols=83 Identities=20% Similarity=0.179 Sum_probs=51.6
Q ss_pred CCeEEEEecCCCcHHHHHHHHhhccCceeecCCCCceeEEEEEee---CCeEEEEECCCCCCCCChHHHHHHHHHHHhhh
Q 029512 92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKL---GTKLCLVDLPGYGFAYAKEEVKDAWEELVSIS 168 (192)
Q Consensus 92 ~~~i~lvG~~n~GKStlin~L~~~~~~~~~~~~~g~T~~~~~~~~---~~~~~lvDtPG~~~~~~~~~~~~~~~~~~~l~ 168 (192)
..+|+++|.+|||||||++.+.+...........|.......... ...+.||||||- +.....+..+
T Consensus 12 ~~Ki~ivG~~~vGKStLi~~l~~~~~~~~~~~t~g~~~~~~~v~~~~~~~~l~l~Dt~G~------~~~~~~~~~~---- 81 (216)
T PLN03110 12 LFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQ------ERYRAITSAY---- 81 (216)
T ss_pred eeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEECCEEEEEEEEECCCc------HHHHHHHHHH----
Confidence 469999999999999999999986321112222232222222222 347899999993 2222222222
Q ss_pred ccCceeEEEEEEecCCc
Q 029512 169 YRNFWSCTCFLIYIFYT 185 (192)
Q Consensus 169 ~~~~~~~v~~vvD~s~~ 185 (192)
.+.++++++|.|++++
T Consensus 82 -~~~~~~~ilv~d~~~~ 97 (216)
T PLN03110 82 -YRGAVGALLVYDITKR 97 (216)
T ss_pred -hCCCCEEEEEEECCCh
Confidence 2467889999998765
No 169
>cd04105 SR_beta Signal recognition particle receptor, beta subunit (SR-beta). SR-beta and SR-alpha form the heterodimeric signal recognition particle (SRP or SR) receptor that binds SRP to regulate protein translocation across the ER membrane. Nascent polypeptide chains are synthesized with an N-terminal hydrophobic signal sequence that binds SRP54, a component of the SRP. SRP directs targeting of the ribosome-nascent chain complex (RNC) to the ER membrane via interaction with the SR, which is localized to the ER membrane. The RNC is then transferred to the protein-conducting channel, or translocon, which facilitates polypeptide translation across the ER membrane or integration into the ER membrane. SR-beta is found only in eukaryotes; it is believed to control the release of the signal sequence from SRP54 upon binding of the ribosome to the translocon. High expression of SR-beta has been observed in human colon cancer, suggesting it may play a role in the development of this typ
Probab=98.91 E-value=1.2e-08 Score=81.73 Aligned_cols=79 Identities=23% Similarity=0.332 Sum_probs=50.5
Q ss_pred CeEEEEecCCCcHHHHHHHHhhccCceeecCCCCceeEEEEEe-----eCCeEEEEECCCCCCCCChHHHHHHHHHHHhh
Q 029512 93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFK-----LGTKLCLVDLPGYGFAYAKEEVKDAWEELVSI 167 (192)
Q Consensus 93 ~~i~lvG~~n~GKStlin~L~~~~~~~~~~~~~g~T~~~~~~~-----~~~~~~lvDtPG~~~~~~~~~~~~~~~~~~~l 167 (192)
+.|+++|++|+|||||++.|.... ... ..+.++....... .+..+.+|||||.. .....+... +
T Consensus 1 ~~vll~G~~~sGKTsL~~~l~~~~-~~~--t~~s~~~~~~~~~~~~~~~~~~~~l~D~pG~~------~~~~~~~~~--~ 69 (203)
T cd04105 1 PTVLLLGPSDSGKTALFTKLTTGK-YRS--TVTSIEPNVATFILNSEGKGKKFRLVDVPGHP------KLRDKLLET--L 69 (203)
T ss_pred CeEEEEcCCCCCHHHHHHHHhcCC-CCC--ccCcEeecceEEEeecCCCCceEEEEECCCCH------HHHHHHHHH--H
Confidence 478999999999999999999863 211 1111111111111 25779999999953 223333222 2
Q ss_pred hccCc-eeEEEEEEecCCc
Q 029512 168 SYRNF-WSCTCFLIYIFYT 185 (192)
Q Consensus 168 ~~~~~-~~~v~~vvD~s~~ 185 (192)
+. ++++++|+|++..
T Consensus 70 ---~~~~~~vV~VvD~~~~ 85 (203)
T cd04105 70 ---KNSAKGIVFVVDSATF 85 (203)
T ss_pred ---hccCCEEEEEEECccc
Confidence 23 4999999999775
No 170
>cd04101 RabL4 RabL4 (Rab-like4) subfamily. RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown.
Probab=98.90 E-value=1.5e-08 Score=77.06 Aligned_cols=81 Identities=16% Similarity=0.092 Sum_probs=49.7
Q ss_pred eEEEEecCCCcHHHHHHHHhhccCceeecCCCCce---eEEEEEe----eCCeEEEEECCCCCCCCChHHHHHHHHHHHh
Q 029512 94 EIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLT---QTINFFK----LGTKLCLVDLPGYGFAYAKEEVKDAWEELVS 166 (192)
Q Consensus 94 ~i~lvG~~n~GKStlin~L~~~~~~~~~~~~~g~T---~~~~~~~----~~~~~~lvDtPG~~~~~~~~~~~~~~~~~~~ 166 (192)
+|+++|.+|||||||++++.+... ........++ ....... ....+.+|||||. +.....+..+
T Consensus 2 ki~vvG~~~~GKtsl~~~l~~~~~-~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~G~------~~~~~~~~~~-- 72 (164)
T cd04101 2 RCAVVGDPAVGKTAFVQMFHSNGA-VFPKNYLMTTGCDFVVKEVPVDTDNTVELFIFDSAGQ------ELYSDMVSNY-- 72 (164)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCC-CcCccCCCceEEEEEEEEEEeCCCCEEEEEEEECCCH------HHHHHHHHHH--
Confidence 789999999999999999986411 1222222222 1111111 1357899999993 2112222222
Q ss_pred hhccCceeEEEEEEecCCce
Q 029512 167 ISYRNFWSCTCFLIYIFYTN 186 (192)
Q Consensus 167 l~~~~~~~~v~~vvD~s~~~ 186 (192)
.+.+|++++|+|.++++
T Consensus 73 ---~~~~d~ii~v~d~~~~~ 89 (164)
T cd04101 73 ---WESPSVFILVYDVSNKA 89 (164)
T ss_pred ---hCCCCEEEEEEECcCHH
Confidence 35789999999998763
No 171
>cd04132 Rho4_like Rho4-like subfamily. Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=98.90 E-value=8.3e-09 Score=80.63 Aligned_cols=80 Identities=13% Similarity=0.028 Sum_probs=49.2
Q ss_pred CeEEEEecCCCcHHHHHHHHhhccCceeecCCCCce-eEE-EEEee----CCeEEEEECCCCCCCCChHHHHHHHHHHHh
Q 029512 93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLT-QTI-NFFKL----GTKLCLVDLPGYGFAYAKEEVKDAWEELVS 166 (192)
Q Consensus 93 ~~i~lvG~~n~GKStlin~L~~~~~~~~~~~~~g~T-~~~-~~~~~----~~~~~lvDtPG~~~~~~~~~~~~~~~~~~~ 166 (192)
.+|+++|.+|+|||||++++.+.. . ......++ .+. ..... ...+.+|||||.. .....+..
T Consensus 1 ~ki~vvG~~~vGKTsli~~l~~~~-~--~~~~~~t~~~~~~~~i~~~~~~~~~l~i~Dt~G~~------~~~~~~~~--- 68 (187)
T cd04132 1 KKIVVVGDGGCGKTCLLIVYSQGK-F--PEEYVPTVFENYVTNIQGPNGKIIELALWDTAGQE------EYDRLRPL--- 68 (187)
T ss_pred CeEEEECCCCCCHHHHHHHHHhCc-C--CCCCCCeeeeeeEEEEEecCCcEEEEEEEECCCch------hHHHHHHH---
Confidence 379999999999999999999863 2 12221111 111 11111 2358899999942 11112211
Q ss_pred hhccCceeEEEEEEecCCce
Q 029512 167 ISYRNFWSCTCFLIYIFYTN 186 (192)
Q Consensus 167 l~~~~~~~~v~~vvD~s~~~ 186 (192)
..+.+|++++|+|+++++
T Consensus 69 --~~~~ad~ii~v~d~~~~~ 86 (187)
T cd04132 69 --SYPDVDVLLICYAVDNPT 86 (187)
T ss_pred --hCCCCCEEEEEEECCCHH
Confidence 235789999999987654
No 172
>cd04116 Rab9 Rab9 subfamily. Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CX
Probab=98.90 E-value=7.7e-09 Score=79.39 Aligned_cols=84 Identities=17% Similarity=0.127 Sum_probs=48.0
Q ss_pred CCCeEEEEecCCCcHHHHHHHHhhccCceeecCCCCceeEEEEEe---eCCeEEEEECCCCCCCCChHHHHHHHHHHHhh
Q 029512 91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFK---LGTKLCLVDLPGYGFAYAKEEVKDAWEELVSI 167 (192)
Q Consensus 91 ~~~~i~lvG~~n~GKStlin~L~~~~~~~~~~~~~g~T~~~~~~~---~~~~~~lvDtPG~~~~~~~~~~~~~~~~~~~l 167 (192)
...+|+++|.+|+|||||++.+.+...........|......... ....+.+|||||- +.....+..+
T Consensus 4 ~~~ki~vvG~~~~GKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~D~~G~------~~~~~~~~~~--- 74 (170)
T cd04116 4 SLLKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTLQIWDTAGQ------ERFRSLRTPF--- 74 (170)
T ss_pred eEEEEEEECCCCCCHHHHHHHHHcCCCCcCcCCceeeEEEEEEEEECCeEEEEEEEeCCCh------HHHHHhHHHH---
Confidence 346899999999999999999997631111112222211111111 2346789999993 2222222222
Q ss_pred hccCceeEEEEEEecCCc
Q 029512 168 SYRNFWSCTCFLIYIFYT 185 (192)
Q Consensus 168 ~~~~~~~~v~~vvD~s~~ 185 (192)
.+.+|+++++.|..++
T Consensus 75 --~~~~d~~i~v~d~~~~ 90 (170)
T cd04116 75 --YRGSDCCLLTFAVDDS 90 (170)
T ss_pred --hcCCCEEEEEEECCCH
Confidence 2456777777776654
No 173
>cd04118 Rab24 Rab24 subfamily. Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilita
Probab=98.90 E-value=1.1e-08 Score=80.42 Aligned_cols=82 Identities=12% Similarity=0.075 Sum_probs=49.0
Q ss_pred CeEEEEecCCCcHHHHHHHHhhccCce-eecCCCCceeEEEEEee-C--CeEEEEECCCCCCCCChHHHHHHHHHHHhhh
Q 029512 93 PEIAFAGRSNVGKSSMLNALTRQWGVV-RTSDKPGLTQTINFFKL-G--TKLCLVDLPGYGFAYAKEEVKDAWEELVSIS 168 (192)
Q Consensus 93 ~~i~lvG~~n~GKStlin~L~~~~~~~-~~~~~~g~T~~~~~~~~-~--~~~~lvDtPG~~~~~~~~~~~~~~~~~~~l~ 168 (192)
.+|+++|.+|||||||+|++++..... ...+..+.+........ + ..+.+|||||-.. ....+..+
T Consensus 1 ~ki~vvG~~~vGKSsLi~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~~~------~~~~~~~~---- 70 (193)
T cd04118 1 VKVVMLGKESVGKTSLVERYVHHRFLVGPYQNTIGAAFVAKRMVVGERVVTLGIWDTAGSER------YEAMSRIY---- 70 (193)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCcCCcCcccceeeEEEEEEEEECCEEEEEEEEECCCchh------hhhhhHhh----
Confidence 379999999999999999999863111 12222222222222222 2 3467999999422 11111111
Q ss_pred ccCceeEEEEEEecCCc
Q 029512 169 YRNFWSCTCFLIYIFYT 185 (192)
Q Consensus 169 ~~~~~~~v~~vvD~s~~ 185 (192)
.+.+|++++|+|.+++
T Consensus 71 -~~~~d~iilv~d~~~~ 86 (193)
T cd04118 71 -YRGAKAAIVCYDLTDS 86 (193)
T ss_pred -cCCCCEEEEEEECCCH
Confidence 2467889999998765
No 174
>cd00876 Ras Ras family. The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m
Probab=98.89 E-value=1.4e-08 Score=76.51 Aligned_cols=79 Identities=11% Similarity=0.032 Sum_probs=49.9
Q ss_pred eEEEEecCCCcHHHHHHHHhhccCceeecCCCCceeEEE--EEee---CCeEEEEECCCCCCCCChHHHHHHHHHHHhhh
Q 029512 94 EIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTIN--FFKL---GTKLCLVDLPGYGFAYAKEEVKDAWEELVSIS 168 (192)
Q Consensus 94 ~i~lvG~~n~GKStlin~L~~~~~~~~~~~~~g~T~~~~--~~~~---~~~~~lvDtPG~~~~~~~~~~~~~~~~~~~l~ 168 (192)
+|+++|++|+|||||+|++++.. .......++.+.. .... ...+.++|+||... ....+..+
T Consensus 1 ki~i~G~~~~GKTsli~~l~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~------~~~~~~~~---- 67 (160)
T cd00876 1 KVVVLGAGGVGKSAITIQFVKGT---FVEEYDPTIEDSYRKTIVVDGETYTLDILDTAGQEE------FSAMRDLY---- 67 (160)
T ss_pred CEEEECCCCCCHHHHHHHHHhCC---CCcCcCCChhHeEEEEEEECCEEEEEEEEECCChHH------HHHHHHHH----
Confidence 58999999999999999999863 3333333333221 1222 35688999999432 11122222
Q ss_pred ccCceeEEEEEEecCCce
Q 029512 169 YRNFWSCTCFLIYIFYTN 186 (192)
Q Consensus 169 ~~~~~~~v~~vvD~s~~~ 186 (192)
.+.+|++++|+|...++
T Consensus 68 -~~~~~~~i~v~d~~~~~ 84 (160)
T cd00876 68 -IRQGDGFILVYSITDRE 84 (160)
T ss_pred -HhcCCEEEEEEECCCHH
Confidence 23568899999987653
No 175
>cd04114 Rab30 Rab30 subfamily. Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=98.89 E-value=1.7e-08 Score=77.26 Aligned_cols=81 Identities=16% Similarity=0.143 Sum_probs=49.3
Q ss_pred CCeEEEEecCCCcHHHHHHHHhhccCceeecCCCCceeEEE---EEeeC--CeEEEEECCCCCCCCChHHHHHHHHHHHh
Q 029512 92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTIN---FFKLG--TKLCLVDLPGYGFAYAKEEVKDAWEELVS 166 (192)
Q Consensus 92 ~~~i~lvG~~n~GKStlin~L~~~~~~~~~~~~~g~T~~~~---~~~~~--~~~~lvDtPG~~~~~~~~~~~~~~~~~~~ 166 (192)
..+|+++|.+|||||||++++++.. . .....+..+.+.. ....+ ..+.++||||... ....+..+
T Consensus 7 ~~~v~v~G~~~~GKSsli~~l~~~~-~-~~~~~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~~~------~~~~~~~~-- 76 (169)
T cd04114 7 LFKIVLIGNAGVGKTCLVRRFTQGL-F-PPGQGATIGVDFMIKTVEIKGEKIKLQIWDTAGQER------FRSITQSY-- 76 (169)
T ss_pred eeEEEEECCCCCCHHHHHHHHHhCC-C-CCCCCCceeeEEEEEEEEECCEEEEEEEEECCCcHH------HHHHHHHH--
Confidence 4799999999999999999999752 1 1122222222221 11223 4578899999421 11222222
Q ss_pred hhccCceeEEEEEEecCCc
Q 029512 167 ISYRNFWSCTCFLIYIFYT 185 (192)
Q Consensus 167 l~~~~~~~~v~~vvD~s~~ 185 (192)
.+.+|.+++|+|++++
T Consensus 77 ---~~~~d~~i~v~d~~~~ 92 (169)
T cd04114 77 ---YRSANALILTYDITCE 92 (169)
T ss_pred ---hcCCCEEEEEEECcCH
Confidence 2457888888888764
No 176
>cd01851 GBP Guanylate-binding protein (GBP), N-terminal domain. Guanylate-binding proteins (GBPs) define a group of proteins that are synthesized after activation of the cell by interferons. The biochemical properties of GBPs are clearly different from those of Ras-like and heterotrimeric GTP-binding proteins. They bind guanine nucleotides with low affinity (micromolar range), are stable in their absence and have a high turnover GTPase. In addition to binding GDP/GTP, they have the unique ability to bind GMP with equal affinity and hydrolyze GTP not only to GDP, but also to GMP. Furthermore, two unique regions around the base and the phosphate-binding areas, the guanine and the phosphate caps, respectively, give the nucleotide-binding site a unique appearance not found in the canonical GTP-binding proteins. The phosphate cap, which constitutes the region analogous to switch I, completely shields the phosphate-binding site from solvent such that a potential GTPase-activating protein
Probab=98.88 E-value=1.2e-08 Score=83.15 Aligned_cols=63 Identities=21% Similarity=0.210 Sum_probs=47.3
Q ss_pred CCCeEEEEecCCCcHHHHHHHHhhcc-CceeecCCCCceeEEEEEee------CCeEEEEECCCCCCCCC
Q 029512 91 DLPEIAFAGRSNVGKSSMLNALTRQW-GVVRTSDKPGLTQTINFFKL------GTKLCLVDLPGYGFAYA 153 (192)
Q Consensus 91 ~~~~i~lvG~~n~GKStlin~L~~~~-~~~~~~~~~g~T~~~~~~~~------~~~~~lvDtPG~~~~~~ 153 (192)
+...|+++|++++|||||+|.|++.. ..........||+....... +..+.++||||+.++..
T Consensus 6 ~v~vvsv~G~~~sGKS~llN~l~~~~~~f~~~~~~~~~T~gi~~~~~~~~~~~~~~v~~lDteG~~~~~~ 75 (224)
T cd01851 6 PVAVVSVFGPQSSGKSFLLNHLFGTLSGFDVMDTSQQTTKGIWMWSVPFKLGKEHAVLLLDTEGTDGRER 75 (224)
T ss_pred CEEEEEEECCCCCCHHHHHHHHhCCCCCeEecCCCCCCccceEEEeccccCCCcceEEEEecCCcCcccc
Confidence 45689999999999999999999972 33444455678887553322 47899999999987433
No 177
>cd04139 RalA_RalB RalA/RalB subfamily. The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo
Probab=98.88 E-value=1.9e-08 Score=76.10 Aligned_cols=79 Identities=13% Similarity=0.056 Sum_probs=48.0
Q ss_pred eEEEEecCCCcHHHHHHHHhhccCceeecCCCCceeEE---EEEe--eCCeEEEEECCCCCCCCChHHHHHHHHHHHhhh
Q 029512 94 EIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTI---NFFK--LGTKLCLVDLPGYGFAYAKEEVKDAWEELVSIS 168 (192)
Q Consensus 94 ~i~lvG~~n~GKStlin~L~~~~~~~~~~~~~g~T~~~---~~~~--~~~~~~lvDtPG~~~~~~~~~~~~~~~~~~~l~ 168 (192)
+|+++|++|+|||||+|+++... .+....+++.+. .... ....+.+|||||.... ...+...
T Consensus 2 ki~~~G~~~~GKTsl~~~l~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~------~~~~~~~---- 68 (164)
T cd04139 2 KVIVVGAGGVGKSALTLQFMYDE---FVEDYEPTKADSYRKKVVLDGEDVQLNILDTAGQEDY------AAIRDNY---- 68 (164)
T ss_pred EEEEECCCCCCHHHHHHHHHhCC---CccccCCcchhhEEEEEEECCEEEEEEEEECCChhhh------hHHHHHH----
Confidence 79999999999999999999763 222333332221 1111 2356899999995321 1111111
Q ss_pred ccCceeEEEEEEecCCce
Q 029512 169 YRNFWSCTCFLIYIFYTN 186 (192)
Q Consensus 169 ~~~~~~~v~~vvD~s~~~ 186 (192)
.+..+.+++++|.+.++
T Consensus 69 -~~~~~~~i~v~d~~~~~ 85 (164)
T cd04139 69 -HRSGEGFLLVFSITDME 85 (164)
T ss_pred -hhcCCEEEEEEECCCHH
Confidence 23457788888876654
No 178
>PF00025 Arf: ADP-ribosylation factor family The prints entry specific to Sar1 proteins The Prosite entry specific to Sar1 proteins; InterPro: IPR006689 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. This entry represents a branch of the small GTPase superfamily that includes the ADP ribosylation factor Arf, Arl (Arf-like), Arp (Arf-related proteins) and the remotely related Sar (Secretion-associated and Ras-related) proteins. Arf proteins are major regulators of vesicle biogenesis in intracellular traffic []. They cycle between inactive GDP-bound and active GTP-bound forms that bind selectively to effectors. The classical structural GDP/GTP switch is characterised by conformational changes at the so-called switch 1 and switch 2 regions, which bind tightly to the gamma-phosphate of GTP but poorly or not at all to the GDP nucleotide. Structural studies of Arf1 and Arf6 have revealed that although these proteins feature the switch 1 and 2 conformational changes, they depart from other small GTP-binding proteins in that they use an additional, unique switch to propagate structural information from one side of the protein to the other. The GDP/GTP structural cycles of human Arf1 and Arf6 feature a unique conformational change that affects the beta2-beta3 strands connecting switch 1 and switch 2 (interswitch) and also the amphipathic helical N terminus. In GDP-bound Arf1 and Arf6, the interswitch is retracted and forms a pocket to which the N-terminal helix binds, the latter serving as a molecular hasp to maintain the inactive conformation. In the GTP-bound form of these proteins, the interswitch undergoes a two-residue register shift that pulls switch 1 and switch 2 up, restoring an active conformation that can bind GTP. In this conformation, the interswitch projects out of the protein and extrudes the N-terminal hasp by occluding its binding pocket.; GO: 0005525 GTP binding; PDB: 2H57_B 2W83_B 3N5C_B 2J5X_A 3LVR_E 2BAO_A 3LVQ_E 2A5F_A 3PCR_B 1E0S_A ....
Probab=98.87 E-value=4e-09 Score=82.48 Aligned_cols=83 Identities=19% Similarity=0.229 Sum_probs=58.9
Q ss_pred CCCeEEEEecCCCcHHHHHHHHhhccCceeecCCCCceeEEEEEeeCCeEEEEECCCCCCCCChHHHHHHHHHHHhhhcc
Q 029512 91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVSISYR 170 (192)
Q Consensus 91 ~~~~i~lvG~~n~GKStlin~L~~~~~~~~~~~~~g~T~~~~~~~~~~~~~lvDtPG~~~~~~~~~~~~~~~~~~~l~~~ 170 (192)
...+|+++|..|+||||+++.|... ....+.++.|..... ....+..+.++|.+|-. ..+..|..+.
T Consensus 13 ~~~~ililGl~~sGKTtll~~l~~~-~~~~~~pT~g~~~~~-i~~~~~~~~~~d~gG~~------~~~~~w~~y~----- 79 (175)
T PF00025_consen 13 KEIKILILGLDGSGKTTLLNRLKNG-EISETIPTIGFNIEE-IKYKGYSLTIWDLGGQE------SFRPLWKSYF----- 79 (175)
T ss_dssp SEEEEEEEESTTSSHHHHHHHHHSS-SEEEEEEESSEEEEE-EEETTEEEEEEEESSSG------GGGGGGGGGH-----
T ss_pred cEEEEEEECCCccchHHHHHHhhhc-cccccCcccccccce-eeeCcEEEEEEeccccc------cccccceeec-----
Confidence 4569999999999999999999976 344444544544332 22257889999999832 2223454443
Q ss_pred CceeEEEEEEecCCce
Q 029512 171 NFWSCTCFLIYIFYTN 186 (192)
Q Consensus 171 ~~~~~v~~vvD~s~~~ 186 (192)
++++++++|+|+++++
T Consensus 80 ~~~~~iIfVvDssd~~ 95 (175)
T PF00025_consen 80 QNADGIIFVVDSSDPE 95 (175)
T ss_dssp TTESEEEEEEETTGGG
T ss_pred cccceeEEEEecccce
Confidence 4689999999999875
No 179
>cd04177 RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu
Probab=98.86 E-value=9.4e-09 Score=79.04 Aligned_cols=82 Identities=12% Similarity=0.017 Sum_probs=46.0
Q ss_pred CeEEEEecCCCcHHHHHHHHhhccCceeecCCCCce--eEEEEEeeCCeEEEEECCCCCCCCChHHHHHHHHHHHhhhcc
Q 029512 93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLT--QTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVSISYR 170 (192)
Q Consensus 93 ~~i~lvG~~n~GKStlin~L~~~~~~~~~~~~~g~T--~~~~~~~~~~~~~lvDtPG~~~~~~~~~~~~~~~~~~~l~~~ 170 (192)
.+|+++|.+|+|||||++++.+........+..+.. +..........+.+|||||...- ...+..+ .
T Consensus 2 ~ki~liG~~~~GKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~------~~~~~~~-----~ 70 (168)
T cd04177 2 YKIVVLGAGGVGKSALTVQFVQNVFIESYDPTIEDSYRKQVEIDGRQCDLEILDTAGTEQF------TAMRELY-----I 70 (168)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCcccCCcchheEEEEEEECCEEEEEEEEeCCCcccc------hhhhHHH-----H
Confidence 479999999999999999999763211111211111 11111112357899999995321 1111111 1
Q ss_pred CceeEEEEEEecCCc
Q 029512 171 NFWSCTCFLIYIFYT 185 (192)
Q Consensus 171 ~~~~~v~~vvD~s~~ 185 (192)
+.++.+++|+|.+++
T Consensus 71 ~~~~~~vlv~~~~~~ 85 (168)
T cd04177 71 KSGQGFLLVYSVTSE 85 (168)
T ss_pred hhCCEEEEEEECCCH
Confidence 235667777776554
No 180
>cd04176 Rap2 Rap2 subgroup. The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, incl
Probab=98.86 E-value=1.3e-08 Score=77.42 Aligned_cols=80 Identities=10% Similarity=0.034 Sum_probs=47.9
Q ss_pred CeEEEEecCCCcHHHHHHHHhhccCceeecCCCCceeEE--EEEe-e--CCeEEEEECCCCCCCCChHHHHHHHHHHHhh
Q 029512 93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTI--NFFK-L--GTKLCLVDLPGYGFAYAKEEVKDAWEELVSI 167 (192)
Q Consensus 93 ~~i~lvG~~n~GKStlin~L~~~~~~~~~~~~~g~T~~~--~~~~-~--~~~~~lvDtPG~~~~~~~~~~~~~~~~~~~l 167 (192)
.+|+++|.+|+|||||++.+.... .. .....++.+. .... . ...+.+|||||...- ...+..+
T Consensus 2 ~ki~i~G~~~vGKTsl~~~~~~~~-~~--~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~------~~~~~~~--- 69 (163)
T cd04176 2 YKVVVLGSGGVGKSALTVQFVSGT-FI--EKYDPTIEDFYRKEIEVDSSPSVLEILDTAGTEQF------ASMRDLY--- 69 (163)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCC-CC--CCCCCchhheEEEEEEECCEEEEEEEEECCCcccc------cchHHHH---
Confidence 479999999999999999999763 21 1112221111 1111 1 235788999995321 1122222
Q ss_pred hccCceeEEEEEEecCCce
Q 029512 168 SYRNFWSCTCFLIYIFYTN 186 (192)
Q Consensus 168 ~~~~~~~~v~~vvD~s~~~ 186 (192)
.+++|++++|.|+++++
T Consensus 70 --~~~ad~~i~v~d~~~~~ 86 (163)
T cd04176 70 --IKNGQGFIVVYSLVNQQ 86 (163)
T ss_pred --HhhCCEEEEEEECCCHH
Confidence 23578888888887754
No 181
>cd04147 Ras_dva Ras-dva subfamily. Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=98.86 E-value=1.5e-08 Score=80.44 Aligned_cols=78 Identities=12% Similarity=0.069 Sum_probs=48.8
Q ss_pred eEEEEecCCCcHHHHHHHHhhccCceeecCCCCceeE---EEEEeeC--CeEEEEECCCCCCCCChHHHHHHHHHHHhhh
Q 029512 94 EIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQT---INFFKLG--TKLCLVDLPGYGFAYAKEEVKDAWEELVSIS 168 (192)
Q Consensus 94 ~i~lvG~~n~GKStlin~L~~~~~~~~~~~~~g~T~~---~~~~~~~--~~~~lvDtPG~~~~~~~~~~~~~~~~~~~l~ 168 (192)
+|+++|.+|||||||++++++.. .. .....++.+ ..+...+ ..+.++||||.... ...+..
T Consensus 1 kv~vvG~~~vGKTsll~~~~~~~-~~--~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~------~~~~~~----- 66 (198)
T cd04147 1 RLVFMGAAGVGKTALIQRFLYDT-FE--PKYRRTVEEMHRKEYEVGGVSLTLDILDTSGSYSF------PAMRKL----- 66 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHhCC-CC--ccCCCchhhheeEEEEECCEEEEEEEEECCCchhh------hHHHHH-----
Confidence 58999999999999999999863 21 222222211 1121123 57889999995321 111111
Q ss_pred ccCceeEEEEEEecCCc
Q 029512 169 YRNFWSCTCFLIYIFYT 185 (192)
Q Consensus 169 ~~~~~~~v~~vvD~s~~ 185 (192)
....+|++++|+|++++
T Consensus 67 ~~~~ad~vilv~d~~~~ 83 (198)
T cd04147 67 SIQNSDAFALVYAVDDP 83 (198)
T ss_pred HhhcCCEEEEEEECCCH
Confidence 23567999999998875
No 182
>PRK12317 elongation factor 1-alpha; Reviewed
Probab=98.85 E-value=7e-09 Score=91.84 Aligned_cols=83 Identities=18% Similarity=0.196 Sum_probs=57.9
Q ss_pred CCCeEEEEecCCCcHHHHHHHHhhccCce----------------e-------ec------CCCCceeEEEEEe---eCC
Q 029512 91 DLPEIAFAGRSNVGKSSMLNALTRQWGVV----------------R-------TS------DKPGLTQTINFFK---LGT 138 (192)
Q Consensus 91 ~~~~i~lvG~~n~GKStlin~L~~~~~~~----------------~-------~~------~~~g~T~~~~~~~---~~~ 138 (192)
...+|+++|++|+|||||+|+|+...... . +. ...|+|++..... .+.
T Consensus 5 ~~~~v~iiGh~d~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~Er~rG~T~d~~~~~~~~~~~ 84 (425)
T PRK12317 5 PHLNLAVIGHVDHGKSTLVGRLLYETGAIDEHIIEELREEAKEKGKESFKFAWVMDRLKEERERGVTIDLAHKKFETDKY 84 (425)
T ss_pred CEEEEEEECCCCCChHHHHHHHHHHcCCcCHHHHHHHHHHHHhcCCcccchhhhhccCHhHhhcCccceeeeEEEecCCe
Confidence 35689999999999999999999542110 0 01 1578998876544 367
Q ss_pred eEEEEECCCCCCCCChHHHHHHHHHHHhhhccCceeEEEEEEecCC
Q 029512 139 KLCLVDLPGYGFAYAKEEVKDAWEELVSISYRNFWSCTCFLIYIFY 184 (192)
Q Consensus 139 ~~~lvDtPG~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~~vvD~s~ 184 (192)
.+.+|||||... .+..+ +.....+|.+++|+|++.
T Consensus 85 ~i~liDtpG~~~---------~~~~~--~~~~~~aD~~ilVvDa~~ 119 (425)
T PRK12317 85 YFTIVDCPGHRD---------FVKNM--ITGASQADAAVLVVAADD 119 (425)
T ss_pred EEEEEECCCccc---------chhhH--hhchhcCCEEEEEEEccc
Confidence 899999999532 11112 223456899999999986
No 183
>cd00157 Rho Rho (Ras homology) family. Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein
Probab=98.84 E-value=1.9e-08 Score=76.82 Aligned_cols=79 Identities=16% Similarity=0.004 Sum_probs=48.6
Q ss_pred CeEEEEecCCCcHHHHHHHHhhccCceeecCCCCceeE--EEEE---eeCCeEEEEECCCCCCCCChHHHHHHHHHHHhh
Q 029512 93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQT--INFF---KLGTKLCLVDLPGYGFAYAKEEVKDAWEELVSI 167 (192)
Q Consensus 93 ~~i~lvG~~n~GKStlin~L~~~~~~~~~~~~~g~T~~--~~~~---~~~~~~~lvDtPG~~~~~~~~~~~~~~~~~~~l 167 (192)
.+|+++|.+|+|||||+|+|++.. . .....+ +..+ .... .....+.+|||||..... .+..
T Consensus 1 iki~i~G~~~~GKSsli~~l~~~~-~-~~~~~~-~~~~~~~~~~~~~~~~~~l~~~D~~g~~~~~-------~~~~---- 66 (171)
T cd00157 1 IKIVVVGDGAVGKTCLLISYTTGK-F-PTEYVP-TVFDNYSATVTVDGKQVNLGLWDTAGQEEYD-------RLRP---- 66 (171)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCC-C-CCCCCC-ceeeeeEEEEEECCEEEEEEEEeCCCccccc-------ccch----
Confidence 378999999999999999999873 2 111111 1111 1111 124568999999964310 0000
Q ss_pred hccCceeEEEEEEecCCc
Q 029512 168 SYRNFWSCTCFLIYIFYT 185 (192)
Q Consensus 168 ~~~~~~~~v~~vvD~s~~ 185 (192)
...+.+|++++++|++++
T Consensus 67 ~~~~~~~~~i~v~d~~~~ 84 (171)
T cd00157 67 LSYPNTDVFLICFSVDSP 84 (171)
T ss_pred hhcCCCCEEEEEEECCCH
Confidence 112567899999998764
No 184
>cd01884 EF_Tu EF-Tu subfamily. This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=98.84 E-value=1.1e-08 Score=81.82 Aligned_cols=81 Identities=16% Similarity=0.231 Sum_probs=54.2
Q ss_pred CeEEEEecCCCcHHHHHHHHhhccC----ce----------eecCCCCceeEEEEEe---eCCeEEEEECCCCCCCCChH
Q 029512 93 PEIAFAGRSNVGKSSMLNALTRQWG----VV----------RTSDKPGLTQTINFFK---LGTKLCLVDLPGYGFAYAKE 155 (192)
Q Consensus 93 ~~i~lvG~~n~GKStlin~L~~~~~----~~----------~~~~~~g~T~~~~~~~---~~~~~~lvDtPG~~~~~~~~ 155 (192)
.+|+++|+.|+|||||+++|++... .. ......|.|.+..... .+..+.++||||+. +
T Consensus 3 ~ni~iiGh~~~GKTTL~~~Ll~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~i~~iDtPG~~-----~ 77 (195)
T cd01884 3 VNVGTIGHVDHGKTTLTAAITKVLAKKGGAKFKKYDEIDKAPEEKARGITINTAHVEYETANRHYAHVDCPGHA-----D 77 (195)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHhcccccccccccccCChhhhhcCccEEeeeeEecCCCeEEEEEECcCHH-----H
Confidence 5799999999999999999986410 00 0011346776654322 36789999999973 1
Q ss_pred HHHHHHHHHHhhhccCceeEEEEEEecCC
Q 029512 156 EVKDAWEELVSISYRNFWSCTCFLIYIFY 184 (192)
Q Consensus 156 ~~~~~~~~~~~l~~~~~~~~v~~vvD~s~ 184 (192)
..... +.....+|.+++|+|+..
T Consensus 78 ~~~~~------~~~~~~~D~~ilVvda~~ 100 (195)
T cd01884 78 YIKNM------ITGAAQMDGAILVVSATD 100 (195)
T ss_pred HHHHH------HHHhhhCCEEEEEEECCC
Confidence 11222 233456899999999865
No 185
>cd00877 Ran Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is
Probab=98.84 E-value=1.8e-08 Score=77.69 Aligned_cols=82 Identities=11% Similarity=0.046 Sum_probs=49.8
Q ss_pred eEEEEecCCCcHHHHHHHHhhccCceeecCCCCceeEEEEEe---eCCeEEEEECCCCCCCCChHHHHHHHHHHHhhhcc
Q 029512 94 EIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFK---LGTKLCLVDLPGYGFAYAKEEVKDAWEELVSISYR 170 (192)
Q Consensus 94 ~i~lvG~~n~GKStlin~L~~~~~~~~~~~~~g~T~~~~~~~---~~~~~~lvDtPG~~~~~~~~~~~~~~~~~~~l~~~ 170 (192)
+|+++|.+|||||||+|+++.........+..+......... ....+.+|||||..... ..+.. ..
T Consensus 2 ki~vvG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~------~~~~~-----~~ 70 (166)
T cd00877 2 KLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLDFHTNRGKIRFNVWDTAGQEKFG------GLRDG-----YY 70 (166)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCChhhc------cccHH-----Hh
Confidence 799999999999999999986521111222222222211111 23578999999953211 01111 12
Q ss_pred CceeEEEEEEecCCce
Q 029512 171 NFWSCTCFLIYIFYTN 186 (192)
Q Consensus 171 ~~~~~v~~vvD~s~~~ 186 (192)
..+|++++|+|+++++
T Consensus 71 ~~~d~~i~v~d~~~~~ 86 (166)
T cd00877 71 IGGQCAIIMFDVTSRV 86 (166)
T ss_pred cCCCEEEEEEECCCHH
Confidence 4679999999998753
No 186
>cd04117 Rab15 Rab15 subfamily. Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to
Probab=98.83 E-value=3.9e-08 Score=75.32 Aligned_cols=82 Identities=13% Similarity=0.102 Sum_probs=48.2
Q ss_pred eEEEEecCCCcHHHHHHHHhhccCceeecCCCCceeEEEEEee---CCeEEEEECCCCCCCCChHHHHHHHHHHHhhhcc
Q 029512 94 EIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKL---GTKLCLVDLPGYGFAYAKEEVKDAWEELVSISYR 170 (192)
Q Consensus 94 ~i~lvG~~n~GKStlin~L~~~~~~~~~~~~~g~T~~~~~~~~---~~~~~lvDtPG~~~~~~~~~~~~~~~~~~~l~~~ 170 (192)
+|+++|.+|+|||||++.+++........+..+.......... ...+.+|||||-.. ....+..+ .
T Consensus 2 ki~vvG~~~~GKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~------~~~~~~~~-----~ 70 (161)
T cd04117 2 RLLLIGDSGVGKTCLLCRFTDNEFHSSHISTIGVDFKMKTIEVDGIKVRIQIWDTAGQER------YQTITKQY-----Y 70 (161)
T ss_pred EEEEECcCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEeCCCcHh------HHhhHHHH-----h
Confidence 6899999999999999999976311111122222111112222 24678999999421 11112111 2
Q ss_pred CceeEEEEEEecCCce
Q 029512 171 NFWSCTCFLIYIFYTN 186 (192)
Q Consensus 171 ~~~~~v~~vvD~s~~~ 186 (192)
+.+|+++++.|.++++
T Consensus 71 ~~~~~~i~v~d~~~~~ 86 (161)
T cd04117 71 RRAQGIFLVYDISSER 86 (161)
T ss_pred cCCcEEEEEEECCCHH
Confidence 4678888888876653
No 187
>cd04111 Rab39 Rab39 subfamily. Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=98.83 E-value=2.6e-08 Score=80.19 Aligned_cols=81 Identities=23% Similarity=0.253 Sum_probs=49.5
Q ss_pred CeEEEEecCCCcHHHHHHHHhhccCceeecCCCCceeEEE--EEe--eC--CeEEEEECCCCCCCCChHHHHHHHHHHHh
Q 029512 93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTIN--FFK--LG--TKLCLVDLPGYGFAYAKEEVKDAWEELVS 166 (192)
Q Consensus 93 ~~i~lvG~~n~GKStlin~L~~~~~~~~~~~~~g~T~~~~--~~~--~~--~~~~lvDtPG~~~~~~~~~~~~~~~~~~~ 166 (192)
.+|+++|.+|||||||+|.+++.. ..... .+..+.+.. ... .+ ..+.+|||||-. .....+..
T Consensus 3 ~KIvvvG~~~vGKTsLi~~l~~~~-~~~~~-~~ti~~d~~~~~i~~~~~~~~~l~i~Dt~G~~------~~~~~~~~--- 71 (211)
T cd04111 3 FRLIVIGDSTVGKSSLLKRFTEGR-FAEVS-DPTVGVDFFSRLIEIEPGVRIKLQLWDTAGQE------RFRSITRS--- 71 (211)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCC-CCCCC-CceeceEEEEEEEEECCCCEEEEEEEeCCcch------hHHHHHHH---
Confidence 589999999999999999999863 22221 121212211 111 12 468899999942 11112222
Q ss_pred hhccCceeEEEEEEecCCce
Q 029512 167 ISYRNFWSCTCFLIYIFYTN 186 (192)
Q Consensus 167 l~~~~~~~~v~~vvD~s~~~ 186 (192)
..+++|++++|.|.++++
T Consensus 72 --~~~~~d~iilv~D~~~~~ 89 (211)
T cd04111 72 --YYRNSVGVLLVFDITNRE 89 (211)
T ss_pred --HhcCCcEEEEEEECCCHH
Confidence 234678889999987653
No 188
>cd04140 ARHI_like ARHI subfamily. ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to
Probab=98.83 E-value=1.8e-08 Score=77.31 Aligned_cols=83 Identities=13% Similarity=-0.088 Sum_probs=47.4
Q ss_pred CeEEEEecCCCcHHHHHHHHhhccCceeecCCCCceeEEEE--EeeCCeEEEEECCCCCCCCChHHHHHHHHHHHhhhcc
Q 029512 93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINF--FKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVSISYR 170 (192)
Q Consensus 93 ~~i~lvG~~n~GKStlin~L~~~~~~~~~~~~~g~T~~~~~--~~~~~~~~lvDtPG~~~~~~~~~~~~~~~~~~~l~~~ 170 (192)
.+|+++|.+|||||||+|++++........+..+.+..... ......+.++||||..... ..+.. ..
T Consensus 2 ~kv~~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~------~~~~~-----~~ 70 (165)
T cd04140 2 YRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCSKNICTLQITDTTGSHQFP------AMQRL-----SI 70 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCCCcCCcchheEEEEEEECCEEEEEEEEECCCCCcch------HHHHH-----Hh
Confidence 47999999999999999999986311111111121111111 1123568899999964311 11111 12
Q ss_pred CceeEEEEEEecCCce
Q 029512 171 NFWSCTCFLIYIFYTN 186 (192)
Q Consensus 171 ~~~~~v~~vvD~s~~~ 186 (192)
+.++++++|.|.+.++
T Consensus 71 ~~~~~~ilv~d~~~~~ 86 (165)
T cd04140 71 SKGHAFILVYSVTSKQ 86 (165)
T ss_pred hcCCEEEEEEECCCHH
Confidence 3457777888776543
No 189
>PLN03071 GTP-binding nuclear protein Ran; Provisional
Probab=98.83 E-value=2.8e-08 Score=80.49 Aligned_cols=85 Identities=9% Similarity=-0.001 Sum_probs=54.3
Q ss_pred CCCeEEEEecCCCcHHHHHHHHhhccCceeecCCCCceeEEEEEe---eCCeEEEEECCCCCCCCChHHHHHHHHHHHhh
Q 029512 91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFK---LGTKLCLVDLPGYGFAYAKEEVKDAWEELVSI 167 (192)
Q Consensus 91 ~~~~i~lvG~~n~GKStlin~L~~~~~~~~~~~~~g~T~~~~~~~---~~~~~~lvDtPG~~~~~~~~~~~~~~~~~~~l 167 (192)
...+|+++|.+|||||||+++++.........++.|++.....+. ....+.+|||||... ....+..+
T Consensus 12 ~~~Ki~vvG~~gvGKTsli~~~~~~~f~~~~~~tig~~~~~~~~~~~~~~~~l~i~Dt~G~~~------~~~~~~~~--- 82 (219)
T PLN03071 12 PSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEK------FGGLRDGY--- 82 (219)
T ss_pred CceEEEEECcCCCCHHHHHHHHhhCCCCCccCCccceeEEEEEEEECCeEEEEEEEECCCchh------hhhhhHHH---
Confidence 456999999999999999999876532233344445444332222 235789999999532 11122221
Q ss_pred hccCceeEEEEEEecCCce
Q 029512 168 SYRNFWSCTCFLIYIFYTN 186 (192)
Q Consensus 168 ~~~~~~~~v~~vvD~s~~~ 186 (192)
.+.++++++|+|.++++
T Consensus 83 --~~~~~~~ilvfD~~~~~ 99 (219)
T PLN03071 83 --YIHGQCAIIMFDVTARL 99 (219)
T ss_pred --cccccEEEEEEeCCCHH
Confidence 34678889999987653
No 190
>cd04120 Rab12 Rab12 subfamily. Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic
Probab=98.83 E-value=3.5e-08 Score=79.21 Aligned_cols=81 Identities=17% Similarity=0.201 Sum_probs=50.7
Q ss_pred eEEEEecCCCcHHHHHHHHhhccCcee-ecCCCCceeEEEEEee---CCeEEEEECCCCCCCCChHHHHHHHHHHHhhhc
Q 029512 94 EIAFAGRSNVGKSSMLNALTRQWGVVR-TSDKPGLTQTINFFKL---GTKLCLVDLPGYGFAYAKEEVKDAWEELVSISY 169 (192)
Q Consensus 94 ~i~lvG~~n~GKStlin~L~~~~~~~~-~~~~~g~T~~~~~~~~---~~~~~lvDtPG~~~~~~~~~~~~~~~~~~~l~~ 169 (192)
.|+++|.+|||||||++.+.... +.. ...+.+..-....... ...+.+|||+|- +.....|..+
T Consensus 2 ~vvvlG~~gVGKTSli~r~~~~~-f~~~~~~Ti~~~~~~~~i~~~~~~v~l~iwDtaGq------e~~~~l~~~y----- 69 (202)
T cd04120 2 QVIIIGSRGVGKTSLMRRFTDDT-FCEACKSGVGVDFKIKTVELRGKKIRLQIWDTAGQ------ERFNSITSAY----- 69 (202)
T ss_pred EEEEECcCCCCHHHHHHHHHhCC-CCCcCCCcceeEEEEEEEEECCEEEEEEEEeCCCc------hhhHHHHHHH-----
Confidence 68999999999999999999763 211 1111121111111222 366899999994 2223334333
Q ss_pred cCceeEEEEEEecCCce
Q 029512 170 RNFWSCTCFLIYIFYTN 186 (192)
Q Consensus 170 ~~~~~~v~~vvD~s~~~ 186 (192)
.+.+|++++|.|.++++
T Consensus 70 ~~~ad~iIlVfDvtd~~ 86 (202)
T cd04120 70 YRSAKGIILVYDITKKE 86 (202)
T ss_pred hcCCCEEEEEEECcCHH
Confidence 34789999999988764
No 191
>cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily. Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le
Probab=98.82 E-value=2.6e-08 Score=77.20 Aligned_cols=54 Identities=24% Similarity=0.268 Sum_probs=35.4
Q ss_pred CeEEEEecCCCcHHHHHHHHhhccCceeecCCCCc-----eeEEEEEeeCCeEEEEECCCCC
Q 029512 93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGL-----TQTINFFKLGTKLCLVDLPGYG 149 (192)
Q Consensus 93 ~~i~lvG~~n~GKStlin~L~~~~~~~~~~~~~g~-----T~~~~~~~~~~~~~lvDtPG~~ 149 (192)
.+|+++|.+|+|||||++.+++.. . ......+ +........+..+.+|||||..
T Consensus 2 ~kv~l~G~~g~GKTtl~~~~~~~~-~--~~~~~~t~~~~~~~~~~~~~~~~~~~l~D~~g~~ 60 (180)
T cd04137 2 RKIAVLGSRSVGKSSLTVQFVEGH-F--VESYYPTIENTFSKIIRYKGQDYHLEIVDTAGQD 60 (180)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCC-C--ccccCcchhhhEEEEEEECCEEEEEEEEECCChH
Confidence 379999999999999999999763 1 2222222 2222221123567899999953
No 192
>cd04141 Rit_Rin_Ric Rit/Rin/Ric subfamily. Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to sign
Probab=98.82 E-value=4.2e-08 Score=76.25 Aligned_cols=83 Identities=11% Similarity=-0.054 Sum_probs=49.0
Q ss_pred CeEEEEecCCCcHHHHHHHHhhccCceeecCCCCceeEEEEEeeC--CeEEEEECCCCCCCCChHHHHHHHHHHHhhhcc
Q 029512 93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLG--TKLCLVDLPGYGFAYAKEEVKDAWEELVSISYR 170 (192)
Q Consensus 93 ~~i~lvG~~n~GKStlin~L~~~~~~~~~~~~~g~T~~~~~~~~~--~~~~lvDtPG~~~~~~~~~~~~~~~~~~~l~~~ 170 (192)
.+|+++|.+|||||||++.+.+........+..+..........+ ..+.+|||||... ....+..+ .
T Consensus 3 ~ki~vvG~~~vGKTsL~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~------~~~l~~~~-----~ 71 (172)
T cd04141 3 YKIVMLGAGGVGKSAVTMQFISHSFPDYHDPTIEDAYKQQARIDNEPALLDILDTAGQAE------FTAMRDQY-----M 71 (172)
T ss_pred eEEEEECCCCCcHHHHHHHHHhCCCCCCcCCcccceEEEEEEECCEEEEEEEEeCCCchh------hHHHhHHH-----h
Confidence 489999999999999999999763111111111111111111122 4688999999531 12223222 2
Q ss_pred CceeEEEEEEecCCce
Q 029512 171 NFWSCTCFLIYIFYTN 186 (192)
Q Consensus 171 ~~~~~v~~vvD~s~~~ 186 (192)
+.+|++++|.|.++++
T Consensus 72 ~~~d~~ilv~d~~~~~ 87 (172)
T cd04141 72 RCGEGFIICYSVTDRH 87 (172)
T ss_pred hcCCEEEEEEECCchh
Confidence 3568888888887664
No 193
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=98.81 E-value=1.4e-08 Score=73.49 Aligned_cols=81 Identities=16% Similarity=0.172 Sum_probs=49.6
Q ss_pred eEEEEecCCCcHHHHHHHHhhccCce---eecCCCCceeEEEEEee---CCeEEEEECCCCCCCCChHHHHHHHHHHHhh
Q 029512 94 EIAFAGRSNVGKSSMLNALTRQWGVV---RTSDKPGLTQTINFFKL---GTKLCLVDLPGYGFAYAKEEVKDAWEELVSI 167 (192)
Q Consensus 94 ~i~lvG~~n~GKStlin~L~~~~~~~---~~~~~~g~T~~~~~~~~---~~~~~lvDtPG~~~~~~~~~~~~~~~~~~~l 167 (192)
+|+++|.+|+|||||+++|++.. .. ......+.+........ ...+.++|++|...... .+..+
T Consensus 1 kI~V~G~~g~GKTsLi~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~------~~~~~--- 70 (119)
T PF08477_consen 1 KIVVLGDSGVGKTSLIRRLCGGE-FPDNSVPEETSEITIGVDVIVVDGDRQSLQFWDFGGQEEFYS------QHQFF--- 70 (119)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS---------SSTTSCEEEEEEEETTEEEEEEEEEESSSHCHHC------TSHHH---
T ss_pred CEEEECcCCCCHHHHHHHHhcCC-CcccccccccCCCcEEEEEEEecCCceEEEEEecCccceecc------cccch---
Confidence 58999999999999999999874 22 12223333333222221 23488999999632111 01111
Q ss_pred hccCceeEEEEEEecCCce
Q 029512 168 SYRNFWSCTCFLIYIFYTN 186 (192)
Q Consensus 168 ~~~~~~~~v~~vvD~s~~~ 186 (192)
...+|++++|.|++++.
T Consensus 71 --~~~~d~~ilv~D~s~~~ 87 (119)
T PF08477_consen 71 --LKKADAVILVYDLSDPE 87 (119)
T ss_dssp --HHHSCEEEEEEECCGHH
T ss_pred --hhcCcEEEEEEcCCChH
Confidence 23479999999998765
No 194
>PLN03108 Rab family protein; Provisional
Probab=98.80 E-value=5.6e-08 Score=78.07 Aligned_cols=83 Identities=17% Similarity=0.131 Sum_probs=50.1
Q ss_pred CCeEEEEecCCCcHHHHHHHHhhccCceee-cCCCCceeEEEEEee---CCeEEEEECCCCCCCCChHHHHHHHHHHHhh
Q 029512 92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRT-SDKPGLTQTINFFKL---GTKLCLVDLPGYGFAYAKEEVKDAWEELVSI 167 (192)
Q Consensus 92 ~~~i~lvG~~n~GKStlin~L~~~~~~~~~-~~~~g~T~~~~~~~~---~~~~~lvDtPG~~~~~~~~~~~~~~~~~~~l 167 (192)
..+|+++|.+|+|||||+|.+++.. .... ....+.+........ ...+.+|||||.. .....+..+
T Consensus 6 ~~kivivG~~gvGKStLi~~l~~~~-~~~~~~~ti~~~~~~~~i~~~~~~i~l~l~Dt~G~~------~~~~~~~~~--- 75 (210)
T PLN03108 6 LFKYIIIGDTGVGKSCLLLQFTDKR-FQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQE------SFRSITRSY--- 75 (210)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCC-CCCCCCCCccceEEEEEEEECCEEEEEEEEeCCCcH------HHHHHHHHH---
Confidence 3689999999999999999999863 2221 122233322222222 2468899999942 111122111
Q ss_pred hccCceeEEEEEEecCCce
Q 029512 168 SYRNFWSCTCFLIYIFYTN 186 (192)
Q Consensus 168 ~~~~~~~~v~~vvD~s~~~ 186 (192)
.+.+|.+++|+|.+.++
T Consensus 76 --~~~ad~~vlv~D~~~~~ 92 (210)
T PLN03108 76 --YRGAAGALLVYDITRRE 92 (210)
T ss_pred --hccCCEEEEEEECCcHH
Confidence 23567888888876643
No 195
>TIGR00487 IF-2 translation initiation factor IF-2. This model discriminates eubacterial (and mitochondrial) translation initiation factor 2 (IF-2), encoded by the infB gene in bacteria, from similar proteins in the Archaea and Eukaryotes. In the bacteria and in organelles, the initiator tRNA is charged with N-formyl-Met instead of Met. This translation factor acts in delivering the initator tRNA to the ribosome. It is one of a number of GTP-binding translation factors recognized by the pfam model GTP_EFTU.
Probab=98.80 E-value=2.6e-08 Score=91.59 Aligned_cols=82 Identities=17% Similarity=0.292 Sum_probs=57.8
Q ss_pred CCCCeEEEEecCCCcHHHHHHHHhhccCceeecCCCCceeEEEEEee---CC-eEEEEECCCCCCCCChHHHHHHHHHHH
Q 029512 90 PDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKL---GT-KLCLVDLPGYGFAYAKEEVKDAWEELV 165 (192)
Q Consensus 90 ~~~~~i~lvG~~n~GKStlin~L~~~~~~~~~~~~~g~T~~~~~~~~---~~-~~~lvDtPG~~~~~~~~~~~~~~~~~~ 165 (192)
...|.|+++|.+|+|||||+++|.+. .+. ....+|.|++...+.. +. .+.+|||||... ....+
T Consensus 85 ~r~p~V~I~Ghvd~GKTSLl~~l~~~-~v~-~~e~~GIT~~ig~~~v~~~~~~~i~~iDTPGhe~------F~~~r---- 152 (587)
T TIGR00487 85 ERPPVVTIMGHVDHGKTSLLDSIRKT-KVA-QGEAGGITQHIGAYHVENEDGKMITFLDTPGHEA------FTSMR---- 152 (587)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhC-Ccc-cccCCceeecceEEEEEECCCcEEEEEECCCCcc------hhhHH----
Confidence 45689999999999999999999986 322 3345678877653332 33 899999999532 11111
Q ss_pred hhhccCceeEEEEEEecCC
Q 029512 166 SISYRNFWSCTCFLIYIFY 184 (192)
Q Consensus 166 ~l~~~~~~~~v~~vvD~s~ 184 (192)
......+|++++|+|+.+
T Consensus 153 -~rga~~aDiaILVVda~d 170 (587)
T TIGR00487 153 -ARGAKVTDIVVLVVAADD 170 (587)
T ss_pred -HhhhccCCEEEEEEECCC
Confidence 123466799999999865
No 196
>cd04128 Spg1 Spg1p. Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are
Probab=98.80 E-value=4.6e-08 Score=76.93 Aligned_cols=83 Identities=14% Similarity=0.106 Sum_probs=51.0
Q ss_pred CeEEEEecCCCcHHHHHHHHhhccCceeecCCCCceeEEEEEee---CCeEEEEECCCCCCCCChHHHHHHHHHHHhhhc
Q 029512 93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKL---GTKLCLVDLPGYGFAYAKEEVKDAWEELVSISY 169 (192)
Q Consensus 93 ~~i~lvG~~n~GKStlin~L~~~~~~~~~~~~~g~T~~~~~~~~---~~~~~lvDtPG~~~~~~~~~~~~~~~~~~~l~~ 169 (192)
.+|+++|.+|||||||++.+.+........++.|.......... ...+.+|||+|-. .....+.. .
T Consensus 1 ~Ki~vlG~~~vGKTsLi~~~~~~~f~~~~~~T~g~~~~~~~i~~~~~~~~l~iwDt~G~~------~~~~~~~~-----~ 69 (182)
T cd04128 1 LKIGLLGDAQIGKTSLMVKYVEGEFDEDYIQTLGVNFMEKTISIRGTEITFSIWDLGGQR------EFINMLPL-----V 69 (182)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCch------hHHHhhHH-----H
Confidence 37899999999999999999876321112222222221112222 2568999999942 11222222 2
Q ss_pred cCceeEEEEEEecCCce
Q 029512 170 RNFWSCTCFLIYIFYTN 186 (192)
Q Consensus 170 ~~~~~~v~~vvD~s~~~ 186 (192)
.++++++++|+|.++++
T Consensus 70 ~~~a~~iilv~D~t~~~ 86 (182)
T cd04128 70 CNDAVAILFMFDLTRKS 86 (182)
T ss_pred CcCCCEEEEEEECcCHH
Confidence 35789999999987764
No 197
>cd04146 RERG_RasL11_like RERG/RasL11-like subfamily. RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tu
Probab=98.79 E-value=2.9e-08 Score=75.88 Aligned_cols=80 Identities=19% Similarity=0.140 Sum_probs=48.1
Q ss_pred eEEEEecCCCcHHHHHHHHhhccCceeecCCCCcee--EEEEEe-eC--CeEEEEECCCCCCCCChHHHHHHHHHHHhhh
Q 029512 94 EIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQ--TINFFK-LG--TKLCLVDLPGYGFAYAKEEVKDAWEELVSIS 168 (192)
Q Consensus 94 ~i~lvG~~n~GKStlin~L~~~~~~~~~~~~~g~T~--~~~~~~-~~--~~~~lvDtPG~~~~~~~~~~~~~~~~~~~l~ 168 (192)
+|+++|.+|||||||+++++... .....+.++. ...... .+ ..+.+|||||........ +..
T Consensus 1 ki~vvG~~~~GKtsli~~~~~~~---~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~-----~~~----- 67 (165)
T cd04146 1 KIAVLGASGVGKSALVVRFLTKR---FIGEYDPNLESLYSRQVTIDGEQVSLEILDTAGQQQADTEQ-----LER----- 67 (165)
T ss_pred CEEEECCCCCcHHHHHHHHHhCc---cccccCCChHHhceEEEEECCEEEEEEEEECCCCcccccch-----HHH-----
Confidence 48999999999999999998752 2222222221 111111 22 357899999976311111 111
Q ss_pred ccCceeEEEEEEecCCce
Q 029512 169 YRNFWSCTCFLIYIFYTN 186 (192)
Q Consensus 169 ~~~~~~~v~~vvD~s~~~ 186 (192)
..+.+|++++|+|++.++
T Consensus 68 ~~~~~d~~i~v~d~~~~~ 85 (165)
T cd04146 68 SIRWADGFVLVYSITDRS 85 (165)
T ss_pred HHHhCCEEEEEEECCCHH
Confidence 123578999999987653
No 198
>cd04126 Rab20 Rab20 subfamily. Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bo
Probab=98.78 E-value=3.5e-08 Score=80.28 Aligned_cols=80 Identities=14% Similarity=0.032 Sum_probs=50.0
Q ss_pred eEEEEecCCCcHHHHHHHHhhccCceeecCCCCceeEEEEEeeCCeEEEEECCCCCCCCChHHHHHHHHHHHhhhccCce
Q 029512 94 EIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVSISYRNFW 173 (192)
Q Consensus 94 ~i~lvG~~n~GKStlin~L~~~~~~~~~~~~~g~T~~~~~~~~~~~~~lvDtPG~~~~~~~~~~~~~~~~~~~l~~~~~~ 173 (192)
+|+++|.+|||||||++.+++.. +....+..+..... .......+.+|||||.... ...+..+ .+.+
T Consensus 2 KIvivG~~~vGKTSLi~r~~~~~-f~~~~~Tig~~~~~-~~~~~~~l~iwDt~G~e~~------~~l~~~~-----~~~a 68 (220)
T cd04126 2 KVVLLGDMNVGKTSLLHRYMERR-FKDTVSTVGGAFYL-KQWGPYNISIWDTAGREQF------HGLGSMY-----CRGA 68 (220)
T ss_pred EEEEECCCCCcHHHHHHHHhcCC-CCCCCCccceEEEE-EEeeEEEEEEEeCCCcccc------hhhHHHH-----hccC
Confidence 78999999999999999999873 32222221211111 1112456899999995321 1122222 3568
Q ss_pred eEEEEEEecCCce
Q 029512 174 SCTCFLIYIFYTN 186 (192)
Q Consensus 174 ~~v~~vvD~s~~~ 186 (192)
+++++|+|.++++
T Consensus 69 d~~IlV~Dvt~~~ 81 (220)
T cd04126 69 AAVILTYDVSNVQ 81 (220)
T ss_pred CEEEEEEECCCHH
Confidence 9999999988753
No 199
>cd01874 Cdc42 Cdc42 subfamily. Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addi
Probab=98.78 E-value=3.1e-08 Score=77.24 Aligned_cols=80 Identities=15% Similarity=0.030 Sum_probs=49.1
Q ss_pred CeEEEEecCCCcHHHHHHHHhhccCceeecCCCCceeE-E--EEEeeC--CeEEEEECCCCCCCCChHHHHHHHHHHHhh
Q 029512 93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQT-I--NFFKLG--TKLCLVDLPGYGFAYAKEEVKDAWEELVSI 167 (192)
Q Consensus 93 ~~i~lvG~~n~GKStlin~L~~~~~~~~~~~~~g~T~~-~--~~~~~~--~~~~lvDtPG~~~~~~~~~~~~~~~~~~~l 167 (192)
.+|+++|.+|||||||++.+.... + ......++.+ . .....+ ..+.+|||||-... ...+..
T Consensus 2 ~ki~vvG~~~vGKTsl~~~~~~~~-f--~~~~~pt~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~------~~~~~~---- 68 (175)
T cd01874 2 IKCVVVGDGAVGKTCLLISYTTNK-F--PSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDY------DRLRPL---- 68 (175)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCC-C--CCCCCCceeeeeEEEEEECCEEEEEEEEECCCccch------hhhhhh----
Confidence 479999999999999999999763 2 2222222211 1 111112 56889999995321 111111
Q ss_pred hccCceeEEEEEEecCCce
Q 029512 168 SYRNFWSCTCFLIYIFYTN 186 (192)
Q Consensus 168 ~~~~~~~~v~~vvD~s~~~ 186 (192)
..+++|++++|.|.++++
T Consensus 69 -~~~~a~~~ilv~d~~~~~ 86 (175)
T cd01874 69 -SYPQTDVFLVCFSVVSPS 86 (175)
T ss_pred -hcccCCEEEEEEECCCHH
Confidence 234678889999887654
No 200
>smart00174 RHO Rho (Ras homology) subfamily of Ras-like small GTPases. Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms.
Probab=98.77 E-value=2e-08 Score=77.27 Aligned_cols=77 Identities=14% Similarity=0.002 Sum_probs=45.6
Q ss_pred EEEEecCCCcHHHHHHHHhhccCceeecCCCCceeE-E-EEEee---CCeEEEEECCCCCCCCChHHHHHHHHHHHhhhc
Q 029512 95 IAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQT-I-NFFKL---GTKLCLVDLPGYGFAYAKEEVKDAWEELVSISY 169 (192)
Q Consensus 95 i~lvG~~n~GKStlin~L~~~~~~~~~~~~~g~T~~-~-~~~~~---~~~~~lvDtPG~~~~~~~~~~~~~~~~~~~l~~ 169 (192)
|+++|.+|||||||++++.+.. . ......++.+ . ..... ...+.+|||||-... ...+.. .
T Consensus 1 i~i~G~~~vGKTsli~~~~~~~-~--~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~------~~~~~~-----~ 66 (174)
T smart00174 1 LVVVGDGAVGKTCLLISYTTNA-F--PEDYVPTVFENYSADVEVDGKPVELGLWDTAGQEDY------DRLRPL-----S 66 (174)
T ss_pred CEEECCCCCCHHHHHHHHHhCC-C--CCCCCCcEEeeeeEEEEECCEEEEEEEEECCCCccc------chhchh-----h
Confidence 5899999999999999999863 2 1111111111 1 11111 235899999995321 011111 2
Q ss_pred cCceeEEEEEEecCCc
Q 029512 170 RNFWSCTCFLIYIFYT 185 (192)
Q Consensus 170 ~~~~~~v~~vvD~s~~ 185 (192)
.+.+|++++|.|.+++
T Consensus 67 ~~~~d~~ilv~d~~~~ 82 (174)
T smart00174 67 YPDTDVFLICFSVDSP 82 (174)
T ss_pred cCCCCEEEEEEECCCH
Confidence 3467888888888765
No 201
>CHL00189 infB translation initiation factor 2; Provisional
Probab=98.77 E-value=3.7e-08 Score=92.44 Aligned_cols=82 Identities=18% Similarity=0.308 Sum_probs=56.3
Q ss_pred CCCCeEEEEecCCCcHHHHHHHHhhccCceeecCCCCceeEEEEEe-------eCCeEEEEECCCCCCCCChHHHHHHHH
Q 029512 90 PDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFK-------LGTKLCLVDLPGYGFAYAKEEVKDAWE 162 (192)
Q Consensus 90 ~~~~~i~lvG~~n~GKStlin~L~~~~~~~~~~~~~g~T~~~~~~~-------~~~~~~lvDtPG~~~~~~~~~~~~~~~ 162 (192)
...+.|+++|++|+|||||+++|++.. ...+..+|.|++...+. .+..+.+|||||.. .....+.
T Consensus 242 ~r~p~V~IvGhvdvGKTSLld~L~~~~--~~~~e~~GiTq~i~~~~v~~~~~~~~~kItfiDTPGhe------~F~~mr~ 313 (742)
T CHL00189 242 NRPPIVTILGHVDHGKTTLLDKIRKTQ--IAQKEAGGITQKIGAYEVEFEYKDENQKIVFLDTPGHE------AFSSMRS 313 (742)
T ss_pred ccCCEEEEECCCCCCHHHHHHHHHhcc--CccccCCccccccceEEEEEEecCCceEEEEEECCcHH------HHHHHHH
Confidence 456899999999999999999999863 22233456666543222 24789999999952 2222222
Q ss_pred HHHhhhccCceeEEEEEEecCC
Q 029512 163 ELVSISYRNFWSCTCFLIYIFY 184 (192)
Q Consensus 163 ~~~~l~~~~~~~~v~~vvD~s~ 184 (192)
.....+|++++|+|+.+
T Consensus 314 -----rg~~~aDiaILVVDA~d 330 (742)
T CHL00189 314 -----RGANVTDIAILIIAADD 330 (742)
T ss_pred -----HHHHHCCEEEEEEECcC
Confidence 22346799999999865
No 202
>cd01871 Rac1_like Rac1-like subfamily. The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleoti
Probab=98.75 E-value=5.1e-08 Score=75.94 Aligned_cols=83 Identities=12% Similarity=-0.090 Sum_probs=48.8
Q ss_pred CeEEEEecCCCcHHHHHHHHhhccCceeecCCCCce--eEEEEEeeCCeEEEEECCCCCCCCChHHHHHHHHHHHhhhcc
Q 029512 93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLT--QTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVSISYR 170 (192)
Q Consensus 93 ~~i~lvG~~n~GKStlin~L~~~~~~~~~~~~~g~T--~~~~~~~~~~~~~lvDtPG~~~~~~~~~~~~~~~~~~~l~~~ 170 (192)
.+|+++|.+|||||||+.++..........+..+.. ...........+.+|||||-.. ....+.. ..
T Consensus 2 ~ki~iiG~~~vGKSsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~------~~~~~~~-----~~ 70 (174)
T cd01871 2 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQED------YDRLRPL-----SY 70 (174)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCcCCCcceeeeEEEEEECCEEEEEEEEECCCchh------hhhhhhh-----hc
Confidence 479999999999999999998752111111111111 1111111135688999999421 1111211 23
Q ss_pred CceeEEEEEEecCCce
Q 029512 171 NFWSCTCFLIYIFYTN 186 (192)
Q Consensus 171 ~~~~~v~~vvD~s~~~ 186 (192)
+.++++++|.|.++++
T Consensus 71 ~~~d~~ilv~d~~~~~ 86 (174)
T cd01871 71 PQTDVFLICFSLVSPA 86 (174)
T ss_pred CCCCEEEEEEECCCHH
Confidence 4678999999987764
No 203
>PRK05306 infB translation initiation factor IF-2; Validated
Probab=98.75 E-value=3.2e-08 Score=93.47 Aligned_cols=82 Identities=22% Similarity=0.336 Sum_probs=58.7
Q ss_pred CCCCeEEEEecCCCcHHHHHHHHhhccCceeecCCCCceeEEEEEe---eCCeEEEEECCCCCCCCChHHHHHHHHHHHh
Q 029512 90 PDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFK---LGTKLCLVDLPGYGFAYAKEEVKDAWEELVS 166 (192)
Q Consensus 90 ~~~~~i~lvG~~n~GKStlin~L~~~~~~~~~~~~~g~T~~~~~~~---~~~~~~lvDtPG~~~~~~~~~~~~~~~~~~~ 166 (192)
...|.|+++|.+|+|||||+++|.+.. + ..+...|.|++...+. .+..+.||||||...- ...+
T Consensus 288 ~R~pvV~ImGhvd~GKTSLl~~Lr~~~-v-~~~e~~GIT~~iga~~v~~~~~~ItfiDTPGhe~F------~~m~----- 354 (787)
T PRK05306 288 PRPPVVTIMGHVDHGKTSLLDAIRKTN-V-AAGEAGGITQHIGAYQVETNGGKITFLDTPGHEAF------TAMR----- 354 (787)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhCC-c-cccccCceeeeccEEEEEECCEEEEEEECCCCccc------hhHH-----
Confidence 467899999999999999999999863 2 2344567787765433 2678999999996421 1122
Q ss_pred hhccCceeEEEEEEecCC
Q 029512 167 ISYRNFWSCTCFLIYIFY 184 (192)
Q Consensus 167 l~~~~~~~~v~~vvD~s~ 184 (192)
......+|++++|+|+.+
T Consensus 355 ~rga~~aDiaILVVdAdd 372 (787)
T PRK05306 355 ARGAQVTDIVVLVVAADD 372 (787)
T ss_pred HhhhhhCCEEEEEEECCC
Confidence 122456799999999875
No 204
>CHL00071 tufA elongation factor Tu
Probab=98.75 E-value=5.8e-08 Score=85.72 Aligned_cols=83 Identities=17% Similarity=0.186 Sum_probs=55.8
Q ss_pred CCCeEEEEecCCCcHHHHHHHHhhccCc--------------eeecCCCCceeEEEEEe---eCCeEEEEECCCCCCCCC
Q 029512 91 DLPEIAFAGRSNVGKSSMLNALTRQWGV--------------VRTSDKPGLTQTINFFK---LGTKLCLVDLPGYGFAYA 153 (192)
Q Consensus 91 ~~~~i~lvG~~n~GKStlin~L~~~~~~--------------~~~~~~~g~T~~~~~~~---~~~~~~lvDtPG~~~~~~ 153 (192)
...+|+++|.+|+|||||+|+|++.... .......|.|.+..... .+..+.++||||..
T Consensus 11 ~~~~i~i~Gh~d~GKSTL~~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~~~~~~~~iDtPGh~---- 86 (409)
T CHL00071 11 PHVNIGTIGHVDHGKTTLTAAITMTLAAKGGAKAKKYDEIDSAPEEKARGITINTAHVEYETENRHYAHVDCPGHA---- 86 (409)
T ss_pred CeEEEEEECCCCCCHHHHHHHHHHHhCccccccccccccccCChhhhcCCEeEEccEEEEccCCeEEEEEECCChH----
Confidence 3468999999999999999999975210 01112257777754222 35679999999953
Q ss_pred hHHHHHHHHHHHhhhccCceeEEEEEEecCC
Q 029512 154 KEEVKDAWEELVSISYRNFWSCTCFLIYIFY 184 (192)
Q Consensus 154 ~~~~~~~~~~~~~l~~~~~~~~v~~vvD~s~ 184 (192)
+.....+ .....+|.+++|+|+..
T Consensus 87 -~~~~~~~------~~~~~~D~~ilVvda~~ 110 (409)
T CHL00071 87 -DYVKNMI------TGAAQMDGAILVVSAAD 110 (409)
T ss_pred -HHHHHHH------HHHHhCCEEEEEEECCC
Confidence 2222222 23346799999999864
No 205
>KOG1486 consensus GTP-binding protein DRG2 (ODN superfamily) [Signal transduction mechanisms]
Probab=98.75 E-value=1.3e-08 Score=83.79 Aligned_cols=90 Identities=20% Similarity=0.180 Sum_probs=68.2
Q ss_pred CCCCCeEEEEecCCCcHHHHHHHHhhccCceeecCCCCceeEEE---EEeeCCeEEEEECCCCCC-CCChHH-HHHHHHH
Q 029512 89 APDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTIN---FFKLGTKLCLVDLPGYGF-AYAKEE-VKDAWEE 163 (192)
Q Consensus 89 ~~~~~~i~lvG~~n~GKStlin~L~~~~~~~~~~~~~g~T~~~~---~~~~~~~~~lvDtPG~~~-~~~~~~-~~~~~~~ 163 (192)
+.+..+|+++|.|.||||||+..|++-+ .....+.++|-.+. ..+.|..++++|.||+.. +....+ -++.
T Consensus 59 KsGdaRValIGfPSVGKStlLs~iT~T~--SeaA~yeFTTLtcIpGvi~y~ga~IQllDLPGIieGAsqgkGRGRQv--- 133 (364)
T KOG1486|consen 59 KSGDARVALIGFPSVGKSTLLSKITSTH--SEAASYEFTTLTCIPGVIHYNGANIQLLDLPGIIEGASQGKGRGRQV--- 133 (364)
T ss_pred ccCCeEEEEecCCCccHHHHHHHhhcch--hhhhceeeeEEEeecceEEecCceEEEecCcccccccccCCCCCceE---
Confidence 3566799999999999999999999874 56677778887764 334588999999999876 222211 2222
Q ss_pred HHhhhccCceeEEEEEEecCCce
Q 029512 164 LVSISYRNFWSCTCFLIYIFYTN 186 (192)
Q Consensus 164 ~~~l~~~~~~~~v~~vvD~s~~~ 186 (192)
+..++.+|+++.|.|++..+
T Consensus 134 ---iavArtaDlilMvLDatk~e 153 (364)
T KOG1486|consen 134 ---IAVARTADLILMVLDATKSE 153 (364)
T ss_pred ---EEEeecccEEEEEecCCcch
Confidence 56678899999999998654
No 206
>KOG3859 consensus Septins (P-loop GTPases) [Cell cycle control, cell division, chromosome partitioning]
Probab=98.75 E-value=4.1e-09 Score=87.79 Aligned_cols=99 Identities=19% Similarity=0.173 Sum_probs=65.7
Q ss_pred CCeEEEEecCCCcHHHHHHHHhhccCce--eecCCCC-----ceeEEEEEeeCCeEEEEECCCCCCCCChHHHHHHHHHH
Q 029512 92 LPEIAFAGRSNVGKSSMLNALTRQWGVV--RTSDKPG-----LTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEEL 164 (192)
Q Consensus 92 ~~~i~lvG~~n~GKStlin~L~~~~~~~--~~~~~~g-----~T~~~~~~~~~~~~~lvDtPG~~~~~~~~~~~~~~~~~ 164 (192)
.+.|+.||.+|.||||||++|++-..-. .....|+ .|.+.+......++.++||.|||+....+...+.+-++
T Consensus 42 ~FNilCvGETg~GKsTLmdtLFNt~f~~~p~~H~~~~V~L~~~TyelqEsnvrlKLtiv~tvGfGDQinK~~Syk~iVdy 121 (406)
T KOG3859|consen 42 CFNILCVGETGLGKSTLMDTLFNTKFESEPSTHTLPNVKLQANTYELQESNVRLKLTIVDTVGFGDQINKEDSYKPIVDY 121 (406)
T ss_pred eEEEEEeccCCccHHHHHHHHhccccCCCCCccCCCCceeecchhhhhhcCeeEEEEEEeecccccccCcccccchHHHH
Confidence 4689999999999999999999863111 1122333 34445555566789999999999976666555555555
Q ss_pred Hh------hhccCceeEEEEEEecCCceEEEE
Q 029512 165 VS------ISYRNFWSCTCFLIYIFYTNVIIL 190 (192)
Q Consensus 165 ~~------l~~~~~~~~v~~vvD~s~~~~~~~ 190 (192)
++ |.+.-.+.+.++-.+.+.-++|++
T Consensus 122 idaQFEaYLQEELKi~Rsl~~~hDsRiH~CLY 153 (406)
T KOG3859|consen 122 IDAQFEAYLQEELKIRRSLFTYHDSRIHVCLY 153 (406)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccCceEEEEE
Confidence 44 333334455555566677777743
No 207
>cd01886 EF-G Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta
Probab=98.74 E-value=6.9e-08 Score=80.86 Aligned_cols=80 Identities=13% Similarity=0.109 Sum_probs=51.9
Q ss_pred eEEEEecCCCcHHHHHHHHhhccC----ceeec------------CCCCceeEEE---EEeeCCeEEEEECCCCCCCCCh
Q 029512 94 EIAFAGRSNVGKSSMLNALTRQWG----VVRTS------------DKPGLTQTIN---FFKLGTKLCLVDLPGYGFAYAK 154 (192)
Q Consensus 94 ~i~lvG~~n~GKStlin~L~~~~~----~~~~~------------~~~g~T~~~~---~~~~~~~~~lvDtPG~~~~~~~ 154 (192)
+|+++|++|+|||||+|+|+...+ ...+. ...|+|.+.. +.+.+..+.++||||..+
T Consensus 1 nv~ivGh~~~GKTtL~~~Ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~i~liDTPG~~d---- 76 (270)
T cd01886 1 NIGIIAHIDAGKTTTTERILYYTGRIHKIGEVHGGGATMDFMEQERERGITIQSAATTCFWKDHRINIIDTPGHVD---- 76 (270)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCCcccccccCCccccCCCccccCCCcCeeccEEEEEECCEEEEEEECCCcHH----
Confidence 489999999999999999975321 11111 1235665543 334578899999999643
Q ss_pred HHHHHHHHHHHhhhccCceeEEEEEEecCC
Q 029512 155 EEVKDAWEELVSISYRNFWSCTCFLIYIFY 184 (192)
Q Consensus 155 ~~~~~~~~~~~~l~~~~~~~~v~~vvD~s~ 184 (192)
.... + ....+.+|.+++|+|+..
T Consensus 77 -f~~~-~-----~~~l~~aD~ailVVDa~~ 99 (270)
T cd01886 77 -FTIE-V-----ERSLRVLDGAVAVFDAVA 99 (270)
T ss_pred -HHHH-H-----HHHHHHcCEEEEEEECCC
Confidence 1111 1 122345689999999865
No 208
>KOG0073 consensus GTP-binding ADP-ribosylation factor-like protein ARL2 [Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton]
Probab=98.74 E-value=5.8e-08 Score=74.93 Aligned_cols=82 Identities=16% Similarity=0.202 Sum_probs=63.8
Q ss_pred CCeEEEEecCCCcHHHHHHHHhhccCceeecCCCCceeEEEEEeeCCeEEEEECCCCCCCCChHHHHHHHHHHHhhhccC
Q 029512 92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVSISYRN 171 (192)
Q Consensus 92 ~~~i~lvG~~n~GKStlin~L~~~~~~~~~~~~~g~T~~~~~~~~~~~~~lvDtPG~~~~~~~~~~~~~~~~~~~l~~~~ 171 (192)
..+|.++|..|+||||+++++.+. ....+++..|..... ....+..+.++|.-| +..+++.|..+.+
T Consensus 16 E~riLiLGLdNsGKTti~~kl~~~-~~~~i~pt~gf~Ikt-l~~~~~~L~iwDvGG------q~~lr~~W~nYfe----- 82 (185)
T KOG0073|consen 16 EVRILILGLDNSGKTTIVKKLLGE-DTDTISPTLGFQIKT-LEYKGYTLNIWDVGG------QKTLRSYWKNYFE----- 82 (185)
T ss_pred eeEEEEEecCCCCchhHHHHhcCC-CccccCCccceeeEE-EEecceEEEEEEcCC------cchhHHHHHHhhh-----
Confidence 569999999999999999999997 445555555544332 233588899999988 5567788988865
Q ss_pred ceeEEEEEEecCCce
Q 029512 172 FWSCTCFLIYIFYTN 186 (192)
Q Consensus 172 ~~~~v~~vvD~s~~~ 186 (192)
..|++++|+|++++.
T Consensus 83 stdglIwvvDssD~~ 97 (185)
T KOG0073|consen 83 STDGLIWVVDSSDRM 97 (185)
T ss_pred ccCeEEEEEECchHH
Confidence 679999999998864
No 209
>cd04102 RabL3 RabL3 (Rab-like3) subfamily. RabL3s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL3 lacks a prenylation site at the C-terminus. The specific function of RabL3 remains unknown.
Probab=98.74 E-value=9.2e-08 Score=76.82 Aligned_cols=82 Identities=20% Similarity=0.174 Sum_probs=51.5
Q ss_pred eEEEEecCCCcHHHHHHHHhhccCceeecCCCCceeEEEEEee--------CCeEEEEECCCCCCCCChHHHHHHHHHHH
Q 029512 94 EIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKL--------GTKLCLVDLPGYGFAYAKEEVKDAWEELV 165 (192)
Q Consensus 94 ~i~lvG~~n~GKStlin~L~~~~~~~~~~~~~g~T~~~~~~~~--------~~~~~lvDtPG~~~~~~~~~~~~~~~~~~ 165 (192)
+|+++|.++||||||++.+++.........+.|++........ ...+.+|||+|-. .....+..+
T Consensus 2 KIvlvGd~gVGKTSLi~~~~~~~f~~~~~~Tig~~~~~k~~~~~~~~~~~~~~~l~IwDtaG~e------~~~~l~~~~- 74 (202)
T cd04102 2 RVLVVGDSGVGKSSLVHLICKNQVLGRPSWTVGCSVDVKHHTYKEGTPEEKTFFVELWDVGGSE------SVKSTRAVF- 74 (202)
T ss_pred EEEEECCCCCCHHHHHHHHHcCCCCCCCCcceeeeEEEEEEEEcCCCCCCcEEEEEEEecCCch------hHHHHHHHH-
Confidence 7899999999999999999986322222223333222222111 2368999999942 222222222
Q ss_pred hhhccCceeEEEEEEecCCce
Q 029512 166 SISYRNFWSCTCFLIYIFYTN 186 (192)
Q Consensus 166 ~l~~~~~~~~v~~vvD~s~~~ 186 (192)
.+.++++++|.|.+.++
T Consensus 75 ----yr~ad~iIlVyDvtn~~ 91 (202)
T cd04102 75 ----YNQVNGIILVHDLTNRK 91 (202)
T ss_pred ----hCcCCEEEEEEECcChH
Confidence 35689999999987764
No 210
>TIGR00491 aIF-2 translation initiation factor aIF-2/yIF-2. This model describes archaeal and eukaryotic orthologs of bacterial IF-2. Like IF-2, it helps convey the initiator tRNA to the ribosome, although the initiator is N-formyl-Met in bacteria and Met here. This protein is not closely related to the subunits of eIF-2 of eukaryotes, which is also involved in the initiation of translation. The aIF-2 of Methanococcus jannaschii contains a large intein interrupting a region of very strongly conserved sequence very near the amino end; this model does not correctly align the sequences from Methanococcus jannaschii and Pyrococcus horikoshii in this region.
Probab=98.73 E-value=5.3e-08 Score=89.57 Aligned_cols=80 Identities=18% Similarity=0.260 Sum_probs=52.3
Q ss_pred CCCeEEEEecCCCcHHHHHHHHhhccCceeecCCC-CceeEEEEEee---------------------CCeEEEEECCCC
Q 029512 91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKP-GLTQTINFFKL---------------------GTKLCLVDLPGY 148 (192)
Q Consensus 91 ~~~~i~lvG~~n~GKStlin~L~~~~~~~~~~~~~-g~T~~~~~~~~---------------------~~~~~lvDtPG~ 148 (192)
+.|.|+++|.+|+|||||+|+|++.. .....+ ++|++...... ...+.+|||||.
T Consensus 3 r~piV~IiG~~d~GKTSLln~l~~~~---v~~~e~ggiTq~iG~~~v~~~~~~~~~~~~~~~~~v~~~~~~l~~iDTpG~ 79 (590)
T TIGR00491 3 RSPIVSVLGHVDHGKTTLLDKIRGSA---VAKREAGGITQHIGATEIPMDVIEGICGDLLKKFKIRLKIPGLLFIDTPGH 79 (590)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhccc---cccccCCceecccCeeEeeeccccccccccccccccccccCcEEEEECCCc
Confidence 35799999999999999999999873 233333 35554321110 024889999994
Q ss_pred CCCCChHHHHHHHHHHHhhhccCceeEEEEEEecCC
Q 029512 149 GFAYAKEEVKDAWEELVSISYRNFWSCTCFLIYIFY 184 (192)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~l~~~~~~~~v~~vvD~s~ 184 (192)
. .....+. ...+.+|++++|+|+++
T Consensus 80 e------~f~~l~~-----~~~~~aD~~IlVvD~~~ 104 (590)
T TIGR00491 80 E------AFTNLRK-----RGGALADLAILIVDINE 104 (590)
T ss_pred H------hHHHHHH-----HHHhhCCEEEEEEECCc
Confidence 2 1111221 12356899999999875
No 211
>cd01888 eIF2_gamma eIF2-gamma (gamma subunit of initiation factor 2). eIF2 is a heterotrimeric translation initiation factor that consists of alpha, beta, and gamma subunits. The GTP-bound gamma subunit also binds initiator methionyl-tRNA and delivers it to the 40S ribosomal subunit. Following hydrolysis of GTP to GDP, eIF2:GDP is released from the ribosome. The gamma subunit has no intrinsic GTPase activity, but is stimulated by the GTPase activating protein (GAP) eIF5, and GDP/GTP exchange is stimulated by the guanine nucleotide exchange factor (GEF) eIF2B. eIF2B is a heteropentamer, and the epsilon chain binds eIF2. Both eIF5 and eIF2B-epsilon are known to bind strongly to eIF2-beta, but have also been shown to bind directly to eIF2-gamma. It is possible that eIF2-beta serves simply as a high-affinity docking site for eIF5 and eIF2B-epsilon, or that eIF2-beta serves a regulatory role. eIF2-gamma is found only in eukaryotes and archaea. It is closely related to SelB, the sel
Probab=98.73 E-value=5.7e-08 Score=77.68 Aligned_cols=22 Identities=32% Similarity=0.465 Sum_probs=20.5
Q ss_pred eEEEEecCCCcHHHHHHHHhhc
Q 029512 94 EIAFAGRSNVGKSSMLNALTRQ 115 (192)
Q Consensus 94 ~i~lvG~~n~GKStlin~L~~~ 115 (192)
+|+++|+.|+|||||+.+|++.
T Consensus 2 ~i~~~g~~~~GKttL~~~l~~~ 23 (203)
T cd01888 2 NIGTIGHVAHGKSTLVKALSGV 23 (203)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6899999999999999999875
No 212
>smart00053 DYNc Dynamin, GTPase. Large GTPases that mediate vesicle trafficking. Dynamin participates in the endocytic uptake of receptors, associated ligands, and plasma membrane following an exocytic event.
Probab=98.73 E-value=1.1e-07 Score=78.39 Aligned_cols=26 Identities=42% Similarity=0.667 Sum_probs=23.9
Q ss_pred CCCCeEEEEecCCCcHHHHHHHHhhc
Q 029512 90 PDLPEIAFAGRSNVGKSSMLNALTRQ 115 (192)
Q Consensus 90 ~~~~~i~lvG~~n~GKStlin~L~~~ 115 (192)
-..|.++++|.+|+||||++++|+|.
T Consensus 24 i~~p~i~vvG~~~~GKSt~l~~i~g~ 49 (240)
T smart00053 24 LDLPQIAVVGGQSAGKSSVLENFVGR 49 (240)
T ss_pred CCCCeEEEEcCCCccHHHHHHHHhCC
Confidence 35789999999999999999999986
No 213
>cd04148 RGK RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ra
Probab=98.72 E-value=6.4e-08 Score=78.50 Aligned_cols=79 Identities=16% Similarity=0.127 Sum_probs=48.4
Q ss_pred eEEEEecCCCcHHHHHHHHhhccCce-eecCCCC----ceeEEEEEeeCCeEEEEECCCCCCCCChHHHHHHHHHHHhhh
Q 029512 94 EIAFAGRSNVGKSSMLNALTRQWGVV-RTSDKPG----LTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVSIS 168 (192)
Q Consensus 94 ~i~lvG~~n~GKStlin~L~~~~~~~-~~~~~~g----~T~~~~~~~~~~~~~lvDtPG~~~~~~~~~~~~~~~~~~~l~ 168 (192)
+|+++|.+|||||||++.+++.. .. ......+ .............+.+|||||.. ......+
T Consensus 2 KI~lvG~~gvGKTsLi~~~~~~~-~~~~~~~~t~~~~~~~~~i~~~~~~~~l~i~Dt~G~~-----~~~~~~~------- 68 (221)
T cd04148 2 RVVMLGSPGVGKSSLASQFTSGE-YDDHAYDASGDDDTYERTVSVDGEESTLVVIDHWEQE-----MWTEDSC------- 68 (221)
T ss_pred EEEEECCCCCcHHHHHHHHhcCC-cCccCcCCCccccceEEEEEECCEEEEEEEEeCCCcc-----hHHHhHH-------
Confidence 79999999999999999997652 21 1111111 11111221234678999999964 1111111
Q ss_pred ccC-ceeEEEEEEecCCce
Q 029512 169 YRN-FWSCTCFLIYIFYTN 186 (192)
Q Consensus 169 ~~~-~~~~v~~vvD~s~~~ 186 (192)
.. .+|++++|+|++++.
T Consensus 69 -~~~~ad~iilV~d~td~~ 86 (221)
T cd04148 69 -MQYQGDAFVVVYSVTDRS 86 (221)
T ss_pred -hhcCCCEEEEEEECCCHH
Confidence 12 678999999988753
No 214
>cd04135 Tc10 TC10 subfamily. TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interacti
Probab=98.71 E-value=8.8e-08 Score=73.65 Aligned_cols=53 Identities=17% Similarity=0.139 Sum_probs=34.1
Q ss_pred eEEEEecCCCcHHHHHHHHhhccCceeecCCCCceeEE--EEEee---CCeEEEEECCCCC
Q 029512 94 EIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTI--NFFKL---GTKLCLVDLPGYG 149 (192)
Q Consensus 94 ~i~lvG~~n~GKStlin~L~~~~~~~~~~~~~g~T~~~--~~~~~---~~~~~lvDtPG~~ 149 (192)
+|+++|++|+|||||++++.+.. . ......++.+. ..... ...+.+|||||-.
T Consensus 2 ki~i~G~~~~GKTsl~~~~~~~~-~--~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~ 59 (174)
T cd04135 2 KCVVVGDGAVGKTCLLMSYANDA-F--PEEYVPTVFDHYAVSVTVGGKQYLLGLYDTAGQE 59 (174)
T ss_pred EEEEECCCCCCHHHHHHHHHhCC-C--CCCCCCceeeeeEEEEEECCEEEEEEEEeCCCcc
Confidence 78999999999999999999863 2 22222222211 11112 2347799999953
No 215
>cd00882 Ras_like_GTPase Ras-like GTPase superfamily. The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulate initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Memb
Probab=98.71 E-value=2.3e-08 Score=72.90 Aligned_cols=77 Identities=19% Similarity=0.101 Sum_probs=47.0
Q ss_pred EEecCCCcHHHHHHHHhhccCceeecCCCCceeEE--EEEe---eCCeEEEEECCCCCCCCChHHHHHHHHHHHhhhccC
Q 029512 97 FAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTI--NFFK---LGTKLCLVDLPGYGFAYAKEEVKDAWEELVSISYRN 171 (192)
Q Consensus 97 lvG~~n~GKStlin~L~~~~~~~~~~~~~g~T~~~--~~~~---~~~~~~lvDtPG~~~~~~~~~~~~~~~~~~~l~~~~ 171 (192)
++|++|+|||||+|+|.+.. .. ......+..+. .... .+..+.++|+||...... .+ ....+
T Consensus 1 iiG~~~~GKStl~~~l~~~~-~~-~~~~~~t~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~------~~-----~~~~~ 67 (157)
T cd00882 1 VVGDSGVGKTSLLNRLLGGE-FV-PEEYETTIIDFYSKTIEVDGKKVKLQIWDTAGQERFRS------LR-----RLYYR 67 (157)
T ss_pred CCCcCCCcHHHHHHHHHhCC-cC-CcccccchhheeeEEEEECCEEEEEEEEecCChHHHHh------HH-----HHHhc
Confidence 57999999999999999874 21 11111111111 1111 266799999999653111 11 11235
Q ss_pred ceeEEEEEEecCCce
Q 029512 172 FWSCTCFLIYIFYTN 186 (192)
Q Consensus 172 ~~~~v~~vvD~s~~~ 186 (192)
.++.+++|+|++.+.
T Consensus 68 ~~~~~i~v~d~~~~~ 82 (157)
T cd00882 68 GADGIILVYDVTDRE 82 (157)
T ss_pred CCCEEEEEEECcCHH
Confidence 678999999998764
No 216
>TIGR00475 selB selenocysteine-specific elongation factor SelB. In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes the elongation factor SelB, a close homolog rf EF-Tu. It may function by replacing EF-Tu. A C-terminal domain not found in EF-Tu is in all SelB sequences in the seed alignment except that from Methanococcus jannaschii. This model does not find an equivalent protein for eukaryotes.
Probab=98.70 E-value=8.4e-08 Score=88.28 Aligned_cols=79 Identities=25% Similarity=0.275 Sum_probs=55.6
Q ss_pred eEEEEecCCCcHHHHHHHHhhccCce--eecCCCCceeEEEEEe---eCCeEEEEECCCCCCCCChHHHHHHHHHHHhhh
Q 029512 94 EIAFAGRSNVGKSSMLNALTRQWGVV--RTSDKPGLTQTINFFK---LGTKLCLVDLPGYGFAYAKEEVKDAWEELVSIS 168 (192)
Q Consensus 94 ~i~lvG~~n~GKStlin~L~~~~~~~--~~~~~~g~T~~~~~~~---~~~~~~lvDtPG~~~~~~~~~~~~~~~~~~~l~ 168 (192)
.|+++|++|+|||||+|+|++.. .. ......|.|.+..+.. .+..+.+|||||. +... ..+ +.
T Consensus 2 ~I~iiG~~d~GKTTLi~aLtg~~-~d~~~eE~~rGiTid~~~~~~~~~~~~v~~iDtPGh------e~f~---~~~--~~ 69 (581)
T TIGR00475 2 IIATAGHVDHGKTTLLKALTGIA-ADRLPEEKKRGMTIDLGFAYFPLPDYRLGFIDVPGH------EKFI---SNA--IA 69 (581)
T ss_pred EEEEECCCCCCHHHHHHHHhCcc-CcCChhHhcCCceEEeEEEEEEeCCEEEEEEECCCH------HHHH---HHH--Hh
Confidence 68999999999999999999852 11 1123457887765433 2568899999994 2111 111 34
Q ss_pred ccCceeEEEEEEecCC
Q 029512 169 YRNFWSCTCFLIYIFY 184 (192)
Q Consensus 169 ~~~~~~~v~~vvD~s~ 184 (192)
....+|.+++|+|++.
T Consensus 70 g~~~aD~aILVVDa~~ 85 (581)
T TIGR00475 70 GGGGIDAALLVVDADE 85 (581)
T ss_pred hhccCCEEEEEEECCC
Confidence 4567899999999976
No 217
>cd04121 Rab40 Rab40 subfamily. This subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide d
Probab=98.69 E-value=1.1e-07 Score=75.49 Aligned_cols=84 Identities=19% Similarity=0.136 Sum_probs=52.0
Q ss_pred CCeEEEEecCCCcHHHHHHHHhhccCceeecCCCCceeEEEEEe---eCCeEEEEECCCCCCCCChHHHHHHHHHHHhhh
Q 029512 92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFK---LGTKLCLVDLPGYGFAYAKEEVKDAWEELVSIS 168 (192)
Q Consensus 92 ~~~i~lvG~~n~GKStlin~L~~~~~~~~~~~~~g~T~~~~~~~---~~~~~~lvDtPG~~~~~~~~~~~~~~~~~~~l~ 168 (192)
..+|+++|..|||||||++++.............+..-...... ....+.+|||||-. .....+..+
T Consensus 6 ~~KivviG~~~vGKTsll~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~iwDt~G~~------~~~~l~~~~---- 75 (189)
T cd04121 6 LLKFLLVGDSDVGKGEILASLQDGSTESPYGYNMGIDYKTTTILLDGRRVKLQLWDTSGQG------RFCTIFRSY---- 75 (189)
T ss_pred eeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCcceeEEEEEEEEECCEEEEEEEEeCCCcH------HHHHHHHHH----
Confidence 46999999999999999999997521111111222211111111 23568899999942 222233322
Q ss_pred ccCceeEEEEEEecCCce
Q 029512 169 YRNFWSCTCFLIYIFYTN 186 (192)
Q Consensus 169 ~~~~~~~v~~vvD~s~~~ 186 (192)
.+.+|++++|.|.++++
T Consensus 76 -~~~ad~illVfD~t~~~ 92 (189)
T cd04121 76 -SRGAQGIILVYDITNRW 92 (189)
T ss_pred -hcCCCEEEEEEECcCHH
Confidence 35789999999998764
No 218
>cd04169 RF3 RF3 subfamily. Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts.
Probab=98.68 E-value=1.9e-07 Score=78.02 Aligned_cols=81 Identities=19% Similarity=0.189 Sum_probs=50.0
Q ss_pred CeEEEEecCCCcHHHHHHHHhhccCc----eeec----------CCC------CceeE---EEEEeeCCeEEEEECCCCC
Q 029512 93 PEIAFAGRSNVGKSSMLNALTRQWGV----VRTS----------DKP------GLTQT---INFFKLGTKLCLVDLPGYG 149 (192)
Q Consensus 93 ~~i~lvG~~n~GKStlin~L~~~~~~----~~~~----------~~~------g~T~~---~~~~~~~~~~~lvDtPG~~ 149 (192)
.+|+++|++|+|||||+++|+..... ..+. +.. +.|.. ..+...+..+.+|||||..
T Consensus 3 Rni~ivGh~~~GKTTL~e~ll~~~g~i~~~g~v~~~~~~~~t~~D~~~~e~~rg~si~~~~~~~~~~~~~i~liDTPG~~ 82 (267)
T cd04169 3 RTFAIISHPDAGKTTLTEKLLLFGGAIREAGAVKARKSRKHATSDWMEIEKQRGISVTSSVMQFEYRDCVINLLDTPGHE 82 (267)
T ss_pred cEEEEEcCCCCCHHHHHHHHHHhcCCcccCceecccccCCCccCCCcHHHHhCCCCeEEEEEEEeeCCEEEEEEECCCch
Confidence 47999999999999999999854211 1111 100 11111 1233347889999999964
Q ss_pred CCCChHHHHHHHHHHHhhhccCceeEEEEEEecCC
Q 029512 150 FAYAKEEVKDAWEELVSISYRNFWSCTCFLIYIFY 184 (192)
Q Consensus 150 ~~~~~~~~~~~~~~~~~l~~~~~~~~v~~vvD~s~ 184 (192)
+ .....+.. .+.+|.+++|+|++.
T Consensus 83 d-----f~~~~~~~------l~~aD~~IlVvda~~ 106 (267)
T cd04169 83 D-----FSEDTYRT------LTAVDSAVMVIDAAK 106 (267)
T ss_pred H-----HHHHHHHH------HHHCCEEEEEEECCC
Confidence 2 11122222 235799999999865
No 219
>PRK04004 translation initiation factor IF-2; Validated
Probab=98.68 E-value=1.4e-07 Score=86.95 Aligned_cols=81 Identities=19% Similarity=0.281 Sum_probs=52.1
Q ss_pred CCCCeEEEEecCCCcHHHHHHHHhhccCceeecCCC-CceeEEEEEee---------C------------CeEEEEECCC
Q 029512 90 PDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKP-GLTQTINFFKL---------G------------TKLCLVDLPG 147 (192)
Q Consensus 90 ~~~~~i~lvG~~n~GKStlin~L~~~~~~~~~~~~~-g~T~~~~~~~~---------~------------~~~~lvDtPG 147 (192)
.+.|.|+++|++|+|||||+|+|++.. .....+ +.|++...... + ..+.+|||||
T Consensus 4 ~R~p~V~i~Gh~~~GKTSLl~~l~~~~---v~~~~~g~itq~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~iDTPG 80 (586)
T PRK04004 4 LRQPIVVVLGHVDHGKTTLLDKIRGTA---VAAKEAGGITQHIGATEVPIDVIEKIAGPLKKPLPIKLKIPGLLFIDTPG 80 (586)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhCcc---cccCCCCceEEeeceeeccccccccccceeccccccccccCCEEEEECCC
Confidence 356799999999999999999999763 223333 34544321110 0 1378999999
Q ss_pred CCCCCChHHHHHHHHHHHhhhccCceeEEEEEEecCC
Q 029512 148 YGFAYAKEEVKDAWEELVSISYRNFWSCTCFLIYIFY 184 (192)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~~vvD~s~ 184 (192)
... ....+. .....+|++++|+|+++
T Consensus 81 ~e~------f~~~~~-----~~~~~aD~~IlVvDa~~ 106 (586)
T PRK04004 81 HEA------FTNLRK-----RGGALADIAILVVDINE 106 (586)
T ss_pred hHH------HHHHHH-----HhHhhCCEEEEEEECCC
Confidence 532 111111 22356799999999875
No 220
>cd04174 Rnd1_Rho6 Rnd1/Rho6 subfamily. Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=98.68 E-value=1.1e-07 Score=77.99 Aligned_cols=84 Identities=14% Similarity=0.038 Sum_probs=50.3
Q ss_pred CCeEEEEecCCCcHHHHHHHHhhccCceeecCCCCc--eeEEEEEeeCCeEEEEECCCCCCCCChHHHHHHHHHHHhhhc
Q 029512 92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGL--TQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVSISY 169 (192)
Q Consensus 92 ~~~i~lvG~~n~GKStlin~L~~~~~~~~~~~~~g~--T~~~~~~~~~~~~~lvDtPG~~~~~~~~~~~~~~~~~~~l~~ 169 (192)
..+|+++|.+|||||||++.+.+........+..+. +...........+.||||+|-. ........ .
T Consensus 13 ~~KIvvvGd~~VGKTsLi~r~~~~~F~~~y~pTi~~~~~~~i~~~~~~v~l~iwDTaG~e------~~~~~~~~-----~ 81 (232)
T cd04174 13 RCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENYTAGLETEEQRVELSLWDTSGSP------YYDNVRPL-----C 81 (232)
T ss_pred eEEEEEECCCCCcHHHHHHHHhcCCCCCCcCCceeeeeEEEEEECCEEEEEEEEeCCCch------hhHHHHHH-----H
Confidence 458999999999999999999976311111111111 1111111124578999999932 11111111 2
Q ss_pred cCceeEEEEEEecCCce
Q 029512 170 RNFWSCTCFLIYIFYTN 186 (192)
Q Consensus 170 ~~~~~~v~~vvD~s~~~ 186 (192)
.+.++++++|.|.++++
T Consensus 82 ~~~ad~vIlVyDit~~~ 98 (232)
T cd04174 82 YSDSDAVLLCFDISRPE 98 (232)
T ss_pred cCCCcEEEEEEECCChH
Confidence 35788899999987664
No 221
>cd04131 Rnd Rnd subfamily. The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=98.68 E-value=7.3e-08 Score=75.57 Aligned_cols=80 Identities=14% Similarity=0.138 Sum_probs=48.8
Q ss_pred CeEEEEecCCCcHHHHHHHHhhccCceeecCCCCceeE-E-EEEe---eCCeEEEEECCCCCCCCChHHHHHHHHHHHhh
Q 029512 93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQT-I-NFFK---LGTKLCLVDLPGYGFAYAKEEVKDAWEELVSI 167 (192)
Q Consensus 93 ~~i~lvG~~n~GKStlin~L~~~~~~~~~~~~~g~T~~-~-~~~~---~~~~~~lvDtPG~~~~~~~~~~~~~~~~~~~l 167 (192)
.+|+++|.+|||||||++.+.+.. . ......+..+ . .... ....+.+|||||-.. +..+. -
T Consensus 2 ~Kiv~vG~~~vGKTsli~~~~~~~-f--~~~~~~t~~~~~~~~~~~~~~~~~l~iwDt~G~~~----------~~~~~-~ 67 (178)
T cd04131 2 CKIVVVGDVQCGKTALLQVFAKDC-Y--PETYVPTVFENYTASFEIDEQRIELSLWDTSGSPY----------YDNVR-P 67 (178)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCc-C--CCCcCCceEEEEEEEEEECCEEEEEEEEECCCchh----------hhhcc-h
Confidence 379999999999999999999863 1 1222111111 1 1111 235688999999421 11111 1
Q ss_pred hccCceeEEEEEEecCCce
Q 029512 168 SYRNFWSCTCFLIYIFYTN 186 (192)
Q Consensus 168 ~~~~~~~~v~~vvD~s~~~ 186 (192)
...+.++++++|.|.++++
T Consensus 68 ~~~~~a~~~ilvfdit~~~ 86 (178)
T cd04131 68 LCYPDSDAVLICFDISRPE 86 (178)
T ss_pred hhcCCCCEEEEEEECCChh
Confidence 1245778899999987764
No 222
>cd01892 Miro2 Miro2 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=98.68 E-value=1.4e-07 Score=73.02 Aligned_cols=82 Identities=15% Similarity=0.082 Sum_probs=50.4
Q ss_pred CCeEEEEecCCCcHHHHHHHHhhccCceeecCCCCcee---EEEEEe-eC--CeEEEEECCCCCCCCChHHHHHHHHHHH
Q 029512 92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQ---TINFFK-LG--TKLCLVDLPGYGFAYAKEEVKDAWEELV 165 (192)
Q Consensus 92 ~~~i~lvG~~n~GKStlin~L~~~~~~~~~~~~~g~T~---~~~~~~-~~--~~~~lvDtPG~~~~~~~~~~~~~~~~~~ 165 (192)
..+|+++|.+|||||||++++++.. .. +.....++. ...... .+ ..+.++|++|-.... ..+..
T Consensus 4 ~~kv~~vG~~~vGKTsli~~~~~~~-f~-~~~~~~T~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~------~~~~~-- 73 (169)
T cd01892 4 VFLCFVLGAKGSGKSALLRAFLGRS-FS-LNAYSPTIKPRYAVNTVEVYGQEKYLILREVGEDEVAI------LLNDA-- 73 (169)
T ss_pred EEEEEEECCCCCcHHHHHHHHhCCC-CC-cccCCCccCcceEEEEEEECCeEEEEEEEecCCccccc------ccchh--
Confidence 4689999999999999999999863 22 122222221 111111 23 457889999853211 11111
Q ss_pred hhhccCceeEEEEEEecCCce
Q 029512 166 SISYRNFWSCTCFLIYIFYTN 186 (192)
Q Consensus 166 ~l~~~~~~~~v~~vvD~s~~~ 186 (192)
..+.+|++++|+|+++++
T Consensus 74 ---~~~~~d~~llv~d~~~~~ 91 (169)
T cd01892 74 ---ELAACDVACLVYDSSDPK 91 (169)
T ss_pred ---hhhcCCEEEEEEeCCCHH
Confidence 124678999999987753
No 223
>cd04172 Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight
Probab=98.67 E-value=1.1e-07 Score=74.98 Aligned_cols=84 Identities=14% Similarity=0.026 Sum_probs=50.4
Q ss_pred CCeEEEEecCCCcHHHHHHHHhhccCceeecCCCCc--eeEEEEEeeCCeEEEEECCCCCCCCChHHHHHHHHHHHhhhc
Q 029512 92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGL--TQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVSISY 169 (192)
Q Consensus 92 ~~~i~lvG~~n~GKStlin~L~~~~~~~~~~~~~g~--T~~~~~~~~~~~~~lvDtPG~~~~~~~~~~~~~~~~~~~l~~ 169 (192)
..+|+++|.+|||||||++.+..........++.+. +...........+.+|||+|-. .....+. ..
T Consensus 5 ~~KivvvGd~~vGKTsli~~~~~~~f~~~~~pT~~~~~~~~~~~~~~~~~l~iwDtaG~e------~~~~~~~-----~~ 73 (182)
T cd04172 5 KCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIELSLWDTSGSP------YYDNVRP-----LS 73 (182)
T ss_pred eEEEEEECCCCCCHHHHHHHHHhCCCCCccCCceeeeeEEEEEECCEEEEEEEEECCCch------hhHhhhh-----hh
Confidence 458999999999999999999976311111111121 1111111123568999999942 1111111 12
Q ss_pred cCceeEEEEEEecCCce
Q 029512 170 RNFWSCTCFLIYIFYTN 186 (192)
Q Consensus 170 ~~~~~~v~~vvD~s~~~ 186 (192)
.+.+|++++|.|.++++
T Consensus 74 ~~~ad~~ilvyDit~~~ 90 (182)
T cd04172 74 YPDSDAVLICFDISRPE 90 (182)
T ss_pred cCCCCEEEEEEECCCHH
Confidence 45678999999987764
No 224
>cd01882 BMS1 Bms1. Bms1 is an essential, evolutionarily conserved, nucleolar protein. Its depletion interferes with processing of the 35S pre-rRNA at sites A0, A1, and A2, and the formation of 40S subunits. Bms1, the putative endonuclease Rc11, and the essential U3 small nucleolar RNA form a stable subcomplex that is believed to control an early step in the formation of the 40S subumit. The C-terminal domain of Bms1 contains a GTPase-activating protein (GAP) that functions intramolecularly. It is believed that Rc11 activates Bms1 by acting as a guanine-nucleotide exchange factor (GEF) to promote GDP/GTP exchange, and that activated (GTP-bound) Bms1 delivers Rc11 to the preribosomes.
Probab=98.67 E-value=1.3e-07 Score=77.07 Aligned_cols=79 Identities=20% Similarity=0.296 Sum_probs=52.5
Q ss_pred CCCCeEEEEecCCCcHHHHHHHHhhccCceeecCCCCceeEEEEEeeCCeEEEEECCCCCCCCChHHHHHHHHHHHhhhc
Q 029512 90 PDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVSISY 169 (192)
Q Consensus 90 ~~~~~i~lvG~~n~GKStlin~L~~~~~~~~~~~~~g~T~~~~~~~~~~~~~lvDtPG~~~~~~~~~~~~~~~~~~~l~~ 169 (192)
.....|+++|.+|+|||||+|+|.+...........|+. .. ....+..+.++||||.. ... +..
T Consensus 37 ~~~~~i~ivG~~~~GKstl~~~l~~~~~~~~~~~~~g~i-~i-~~~~~~~i~~vDtPg~~--------~~~------l~~ 100 (225)
T cd01882 37 PPPLVVAVVGPPGVGKTTLIKSLVKNYTKQNISDIKGPI-TV-VTGKKRRLTFIECPNDI--------NAM------IDI 100 (225)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhcccCccccccccE-EE-EecCCceEEEEeCCchH--------HHH------HHH
Confidence 345689999999999999999999863222233333421 11 12257889999999842 111 122
Q ss_pred cCceeEEEEEEecCC
Q 029512 170 RNFWSCTCFLIYIFY 184 (192)
Q Consensus 170 ~~~~~~v~~vvD~s~ 184 (192)
.+.+|.+++|+|++.
T Consensus 101 ak~aDvVllviDa~~ 115 (225)
T cd01882 101 AKVADLVLLLIDASF 115 (225)
T ss_pred HHhcCEEEEEEecCc
Confidence 356799999999874
No 225
>PRK12735 elongation factor Tu; Reviewed
Probab=98.67 E-value=1.1e-07 Score=83.68 Aligned_cols=83 Identities=17% Similarity=0.216 Sum_probs=55.7
Q ss_pred CCCeEEEEecCCCcHHHHHHHHhhcc------Cce--------eecCCCCceeEEEEEe---eCCeEEEEECCCCCCCCC
Q 029512 91 DLPEIAFAGRSNVGKSSMLNALTRQW------GVV--------RTSDKPGLTQTINFFK---LGTKLCLVDLPGYGFAYA 153 (192)
Q Consensus 91 ~~~~i~lvG~~n~GKStlin~L~~~~------~~~--------~~~~~~g~T~~~~~~~---~~~~~~lvDtPG~~~~~~ 153 (192)
+..+|+++|.+|+|||||+|+|++.. ... ......|.|.+..... .+..+.++||||..
T Consensus 11 ~~~~i~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rGiT~~~~~~~~~~~~~~i~~iDtPGh~---- 86 (396)
T PRK12735 11 PHVNVGTIGHVDHGKTTLTAAITKVLAKKGGGEAKAYDQIDNAPEEKARGITINTSHVEYETANRHYAHVDCPGHA---- 86 (396)
T ss_pred CeEEEEEECcCCCCHHHHHHHHHHhhhhcCCcccchhhhccCChhHHhcCceEEEeeeEEcCCCcEEEEEECCCHH----
Confidence 45689999999999999999999621 000 0112457777764333 35679999999952
Q ss_pred hHHHHHHHHHHHhhhccCceeEEEEEEecCC
Q 029512 154 KEEVKDAWEELVSISYRNFWSCTCFLIYIFY 184 (192)
Q Consensus 154 ~~~~~~~~~~~~~l~~~~~~~~v~~vvD~s~ 184 (192)
+..... +.....+|.+++|+|+..
T Consensus 87 -~f~~~~------~~~~~~aD~~llVvda~~ 110 (396)
T PRK12735 87 -DYVKNM------ITGAAQMDGAILVVSAAD 110 (396)
T ss_pred -HHHHHH------HhhhccCCEEEEEEECCC
Confidence 212222 233457899999999865
No 226
>cd01870 RhoA_like RhoA-like subfamily. The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranyl
Probab=98.66 E-value=1e-07 Score=73.39 Aligned_cols=56 Identities=14% Similarity=0.091 Sum_probs=34.4
Q ss_pred CeEEEEecCCCcHHHHHHHHhhccCceeecCCCCceeEEEEEe--eCCeEEEEECCCC
Q 029512 93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFK--LGTKLCLVDLPGY 148 (192)
Q Consensus 93 ~~i~lvG~~n~GKStlin~L~~~~~~~~~~~~~g~T~~~~~~~--~~~~~~lvDtPG~ 148 (192)
.+|+++|++|||||||++.+.+........+..+......... ....+.+|||||.
T Consensus 2 ~ki~iiG~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~ 59 (175)
T cd01870 2 KKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQ 59 (175)
T ss_pred cEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccccceEEEEEECCEEEEEEEEeCCCc
Confidence 4899999999999999999998631111111111111111111 1346789999995
No 227
>PLN00023 GTP-binding protein; Provisional
Probab=98.66 E-value=2.1e-07 Score=79.79 Aligned_cols=89 Identities=20% Similarity=0.219 Sum_probs=56.8
Q ss_pred CCCCCCCeEEEEecCCCcHHHHHHHHhhccCceeecCCCCceeEEEEEee----------------CCeEEEEECCCCCC
Q 029512 87 FPAPDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKL----------------GTKLCLVDLPGYGF 150 (192)
Q Consensus 87 ~~~~~~~~i~lvG~~n~GKStlin~L~~~~~~~~~~~~~g~T~~~~~~~~----------------~~~~~lvDtPG~~~ 150 (192)
.+.....+|+++|.+|||||||++.+.+.........+.|++........ ...+.||||+|-
T Consensus 16 ~~~~~~iKIVLLGdsGVGKTSLI~rf~~g~F~~~~~pTIG~d~~ik~I~~~~~~~~~~~ik~d~~k~v~LqIWDTAGq-- 93 (334)
T PLN00023 16 GPPCGQVRVLVVGDSGVGKSSLVHLIVKGSSIARPPQTIGCTVGVKHITYGSPGSSSNSIKGDSERDFFVELWDVSGH-- 93 (334)
T ss_pred CCCccceEEEEECCCCCcHHHHHHHHhcCCcccccCCceeeeEEEEEEEECCcccccccccccCCceEEEEEEECCCC--
Confidence 34455679999999999999999999986322222333444432221111 235899999994
Q ss_pred CCChHHHHHHHHHHHhhhccCceeEEEEEEecCCce
Q 029512 151 AYAKEEVKDAWEELVSISYRNFWSCTCFLIYIFYTN 186 (192)
Q Consensus 151 ~~~~~~~~~~~~~~~~l~~~~~~~~v~~vvD~s~~~ 186 (192)
+.....+..+ .+.++++++|.|.+..+
T Consensus 94 ----ErfrsL~~~y-----yr~AdgiILVyDITdr~ 120 (334)
T PLN00023 94 ----ERYKDCRSLF-----YSQINGVIFVHDLSQRR 120 (334)
T ss_pred ----hhhhhhhHHh-----ccCCCEEEEEEeCCCHH
Confidence 2222333333 35689999999987653
No 228
>cd04134 Rho3 Rho3 subfamily. Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=98.65 E-value=9.5e-08 Score=75.26 Aligned_cols=82 Identities=18% Similarity=0.060 Sum_probs=46.2
Q ss_pred eEEEEecCCCcHHHHHHHHhhccCceeecCCCCce--eEEEEEeeCCeEEEEECCCCCCCCChHHHHHHHHHHHhhhccC
Q 029512 94 EIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLT--QTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVSISYRN 171 (192)
Q Consensus 94 ~i~lvG~~n~GKStlin~L~~~~~~~~~~~~~g~T--~~~~~~~~~~~~~lvDtPG~~~~~~~~~~~~~~~~~~~l~~~~ 171 (192)
+|+++|.+|||||||++.+.+........+..+.. ...........+.+|||||-... ...+ . ...+
T Consensus 2 kivivG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~i~~~~~~~~l~i~Dt~G~~~~------~~l~----~-~~~~ 70 (189)
T cd04134 2 KVVVLGDGACGKTSLLNVFTRGYFPQVYEPTVFENYVHDIFVDGLHIELSLWDTAGQEEF------DRLR----S-LSYA 70 (189)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCccCCcceeeeEEEEEECCEEEEEEEEECCCChhc------cccc----c-cccc
Confidence 78999999999999999999863111111111111 11111111356899999994210 0011 1 1134
Q ss_pred ceeEEEEEEecCCce
Q 029512 172 FWSCTCFLIYIFYTN 186 (192)
Q Consensus 172 ~~~~v~~vvD~s~~~ 186 (192)
.++++++|.|.++++
T Consensus 71 ~a~~~ilv~dv~~~~ 85 (189)
T cd04134 71 DTDVIMLCFSVDSPD 85 (189)
T ss_pred CCCEEEEEEECCCHH
Confidence 567777777766553
No 229
>TIGR02836 spore_IV_A stage IV sporulation protein A. A comparative genome analysis of all sequenced genomes of shows a number of proteins conserved strictly among the endospore-forming subset of the Firmicutes. This protein, a member of this panel, is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis.
Probab=98.65 E-value=7e-08 Score=84.80 Aligned_cols=61 Identities=23% Similarity=0.338 Sum_probs=48.8
Q ss_pred CCCCeEEEEecCCCcHHHHHHHHhhcc---Cce-----------eecCCCC---ceeEEEEEe-------eC----CeEE
Q 029512 90 PDLPEIAFAGRSNVGKSSMLNALTRQW---GVV-----------RTSDKPG---LTQTINFFK-------LG----TKLC 141 (192)
Q Consensus 90 ~~~~~i~lvG~~n~GKStlin~L~~~~---~~~-----------~~~~~~g---~T~~~~~~~-------~~----~~~~ 141 (192)
.+...|+++|+.|+|||||||++++.- ..+ .+++.+| +|+++.+.+ .. .++.
T Consensus 15 ~G~IyIGvvGpvrtGKSTfIn~fm~q~VlP~i~~~~~k~Ra~DELpqs~~GktItTTePkfvP~kAvEI~~~~~~~~~Vr 94 (492)
T TIGR02836 15 QGDIYIGVVGPVRTGKSTFIKKFMELLVLPNISNEYDKERAQDELPQSAAGKTIMTTEPKFVPNEAVEININEGTKFKVR 94 (492)
T ss_pred CCcEEEEEEcCCCCChHHHHHHHHhhhccccccchhHHhHHHhccCcCCCCCCcccCCCccccCcceEEeccCCCcccEE
Confidence 356799999999999999999999871 123 6778889 899887633 12 6899
Q ss_pred EEECCCCCC
Q 029512 142 LVDLPGYGF 150 (192)
Q Consensus 142 lvDtPG~~~ 150 (192)
++||+||..
T Consensus 95 lIDcvG~~v 103 (492)
T TIGR02836 95 LVDCVGYTV 103 (492)
T ss_pred EEECCCccc
Confidence 999999965
No 230
>cd04130 Wrch_1 Wrch-1 subfamily. Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus,
Probab=98.65 E-value=1.1e-07 Score=73.39 Aligned_cols=79 Identities=13% Similarity=0.043 Sum_probs=48.2
Q ss_pred eEEEEecCCCcHHHHHHHHhhccCceeecCCCCceeEEE--EEee---CCeEEEEECCCCCCCCChHHHHHHHHHHHhhh
Q 029512 94 EIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTIN--FFKL---GTKLCLVDLPGYGFAYAKEEVKDAWEELVSIS 168 (192)
Q Consensus 94 ~i~lvG~~n~GKStlin~L~~~~~~~~~~~~~g~T~~~~--~~~~---~~~~~lvDtPG~~~~~~~~~~~~~~~~~~~l~ 168 (192)
+++++|.+|+|||||++++.+.. .......++.+.. .... ...+.+|||||.... ...+. .
T Consensus 2 k~~i~G~~~~GKtsl~~~~~~~~---~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~------~~~~~-----~ 67 (173)
T cd04130 2 KCVLVGDGAVGKTSLIVSYTTNG---YPTEYVPTAFDNFSVVVLVDGKPVRLQLCDTAGQDEF------DKLRP-----L 67 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHhCC---CCCCCCCceeeeeeEEEEECCEEEEEEEEECCCChhh------ccccc-----c
Confidence 78999999999999999998752 2233333332211 1111 346789999996321 00111 1
Q ss_pred ccCceeEEEEEEecCCce
Q 029512 169 YRNFWSCTCFLIYIFYTN 186 (192)
Q Consensus 169 ~~~~~~~v~~vvD~s~~~ 186 (192)
..+.+|.+++|.|.++++
T Consensus 68 ~~~~a~~~i~v~d~~~~~ 85 (173)
T cd04130 68 CYPDTDVFLLCFSVVNPS 85 (173)
T ss_pred ccCCCcEEEEEEECCCHH
Confidence 234668888888877654
No 231
>cd01875 RhoG RhoG subfamily. RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-termin
Probab=98.65 E-value=1.7e-07 Score=74.08 Aligned_cols=83 Identities=14% Similarity=-0.059 Sum_probs=49.5
Q ss_pred CeEEEEecCCCcHHHHHHHHhhccCceeecCCCCceeEEEEEe--eCCeEEEEECCCCCCCCChHHHHHHHHHHHhhhcc
Q 029512 93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFK--LGTKLCLVDLPGYGFAYAKEEVKDAWEELVSISYR 170 (192)
Q Consensus 93 ~~i~lvG~~n~GKStlin~L~~~~~~~~~~~~~g~T~~~~~~~--~~~~~~lvDtPG~~~~~~~~~~~~~~~~~~~l~~~ 170 (192)
.+|+++|.+|||||||++.+..........++.+......... ....+.+|||||-. .....+..+ .
T Consensus 4 ~ki~~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~e------~~~~l~~~~-----~ 72 (191)
T cd01875 4 IKCVVVGDGAVGKTCLLICYTTNAFPKEYIPTVFDNYSAQTAVDGRTVSLNLWDTAGQE------EYDRLRTLS-----Y 72 (191)
T ss_pred EEEEEECCCCCCHHHHHHHHHhCCCCcCCCCceEeeeEEEEEECCEEEEEEEEECCCch------hhhhhhhhh-----c
Confidence 5899999999999999999997521111112222111111111 13568999999942 222222222 3
Q ss_pred CceeEEEEEEecCCce
Q 029512 171 NFWSCTCFLIYIFYTN 186 (192)
Q Consensus 171 ~~~~~v~~vvD~s~~~ 186 (192)
+.+|++++|.|.++++
T Consensus 73 ~~a~~~ilvydit~~~ 88 (191)
T cd01875 73 PQTNVFIICFSIASPS 88 (191)
T ss_pred cCCCEEEEEEECCCHH
Confidence 5678889998887764
No 232
>cd04170 EF-G_bact Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group
Probab=98.65 E-value=2.2e-07 Score=77.35 Aligned_cols=81 Identities=21% Similarity=0.229 Sum_probs=49.0
Q ss_pred eEEEEecCCCcHHHHHHHHhhccCc----eeecCC------------CCceeEE---EEEeeCCeEEEEECCCCCCCCCh
Q 029512 94 EIAFAGRSNVGKSSMLNALTRQWGV----VRTSDK------------PGLTQTI---NFFKLGTKLCLVDLPGYGFAYAK 154 (192)
Q Consensus 94 ~i~lvG~~n~GKStlin~L~~~~~~----~~~~~~------------~g~T~~~---~~~~~~~~~~lvDtPG~~~~~~~ 154 (192)
+|+++|.+|+|||||+|+|++.... ..+... .+.|... .+...+..+.+|||||..+
T Consensus 1 ni~ivG~~gsGKStL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~r~~ti~~~~~~~~~~~~~i~liDtPG~~~---- 76 (268)
T cd04170 1 NIALVGHSGSGKTTLAEALLYATGAIDRLGSVEDGTTVSDYDPEEIKRKMSISTSVAPLEWKGHKINLIDTPGYAD---- 76 (268)
T ss_pred CEEEECCCCCCHHHHHHHHHHhcCCCccCCeecCCcccCCCCHHHHhhcccccceeEEEEECCEEEEEEECcCHHH----
Confidence 4799999999999999999864211 111100 0122221 2233467899999999642
Q ss_pred HHHHHHHHHHHhhhccCceeEEEEEEecCCc
Q 029512 155 EEVKDAWEELVSISYRNFWSCTCFLIYIFYT 185 (192)
Q Consensus 155 ~~~~~~~~~~~~l~~~~~~~~v~~vvD~s~~ 185 (192)
....+... ...+|.+++|+|++..
T Consensus 77 --f~~~~~~~-----l~~aD~~i~Vvd~~~g 100 (268)
T cd04170 77 --FVGETRAA-----LRAADAALVVVSAQSG 100 (268)
T ss_pred --HHHHHHHH-----HHHCCEEEEEEeCCCC
Confidence 11111111 2357999999998764
No 233
>cd04168 TetM_like Tet(M)-like subfamily. Tet(M), Tet(O), Tet(W), and OtrA are tetracycline resistance genes found in Gram-positive and Gram-negative bacteria. Tetracyclines inhibit protein synthesis by preventing aminoacyl-tRNA from binding to the ribosomal acceptor site. This subfamily contains tetracycline resistance proteins that function through ribosomal protection and are typically found on mobile genetic elements, such as transposons or plasmids, and are often conjugative. Ribosomal protection proteins are homologous to the elongation factors EF-Tu and EF-G. EF-G and Tet(M) compete for binding on the ribosomes. Tet(M) has a higher affinity than EF-G, suggesting these two proteins may have overlapping binding sites and that Tet(M) must be released before EF-G can bind. Tet(M) and Tet(O) have been shown to have ribosome-dependent GTPase activity. These proteins are part of the GTP translation factor family, which includes EF-G, EF-Tu, EF2, LepA, and SelB.
Probab=98.65 E-value=6.3e-08 Score=79.56 Aligned_cols=81 Identities=20% Similarity=0.204 Sum_probs=49.8
Q ss_pred eEEEEecCCCcHHHHHHHHhhccCc----eeecC------------CCCceeEE---EEEeeCCeEEEEECCCCCCCCCh
Q 029512 94 EIAFAGRSNVGKSSMLNALTRQWGV----VRTSD------------KPGLTQTI---NFFKLGTKLCLVDLPGYGFAYAK 154 (192)
Q Consensus 94 ~i~lvG~~n~GKStlin~L~~~~~~----~~~~~------------~~g~T~~~---~~~~~~~~~~lvDtPG~~~~~~~ 154 (192)
+|+++|.+|+|||||+++|+..... ..+.. .-|.|... .+...+.++.++||||...-
T Consensus 1 ni~i~G~~~~GKTtL~~~ll~~~g~i~~~g~v~~~~~~~D~~~~e~~rg~ti~~~~~~~~~~~~~i~liDTPG~~~f--- 77 (237)
T cd04168 1 NIGILAHVDAGKTTLTESLLYTSGAIRKLGSVDKGTTRTDTMELERQRGITIFSAVASFQWEDTKVNLIDTPGHMDF--- 77 (237)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCccccccccCCcccCCCchhHhhCCCceeeeeEEEEECCEEEEEEeCCCccch---
Confidence 4799999999999999999875311 11111 11222222 22334778999999998531
Q ss_pred HHHHHHHHHHHhhhccCceeEEEEEEecCCc
Q 029512 155 EEVKDAWEELVSISYRNFWSCTCFLIYIFYT 185 (192)
Q Consensus 155 ~~~~~~~~~~~~l~~~~~~~~v~~vvD~s~~ 185 (192)
.. .+.. ..+.+|.+++|+|++..
T Consensus 78 --~~-~~~~-----~l~~aD~~IlVvd~~~g 100 (237)
T cd04168 78 --IA-EVER-----SLSVLDGAILVISAVEG 100 (237)
T ss_pred --HH-HHHH-----HHHHhCeEEEEEeCCCC
Confidence 11 1111 12356899999998753
No 234
>cd04173 Rnd2_Rho7 Rnd2/Rho7 subfamily. Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in sperma
Probab=98.63 E-value=2.5e-07 Score=75.42 Aligned_cols=83 Identities=13% Similarity=0.006 Sum_probs=50.1
Q ss_pred CeEEEEecCCCcHHHHHHHHhhccCceeecCCCCceeEEEEEe--eCCeEEEEECCCCCCCCChHHHHHHHHHHHhhhcc
Q 029512 93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFK--LGTKLCLVDLPGYGFAYAKEEVKDAWEELVSISYR 170 (192)
Q Consensus 93 ~~i~lvG~~n~GKStlin~L~~~~~~~~~~~~~g~T~~~~~~~--~~~~~~lvDtPG~~~~~~~~~~~~~~~~~~~l~~~ 170 (192)
.+|+++|.+|||||||++.+++........++.+......... ....+.+|||+|-. .....+.. ..
T Consensus 2 ~KIvvvGd~~vGKTsLi~~~~~~~f~~~y~pTi~~~~~~~~~~~~~~v~L~iwDt~G~e------~~~~l~~~-----~~ 70 (222)
T cd04173 2 CKIVVVGDAECGKTALLQVFAKDAYPGSYVPTVFENYTASFEIDKRRIELNMWDTSGSS------YYDNVRPL-----AY 70 (222)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCccCCccccceEEEEEECCEEEEEEEEeCCCcH------HHHHHhHH-----hc
Confidence 3799999999999999999997631111111212111111111 23568899999942 11111111 24
Q ss_pred CceeEEEEEEecCCce
Q 029512 171 NFWSCTCFLIYIFYTN 186 (192)
Q Consensus 171 ~~~~~v~~vvD~s~~~ 186 (192)
+.+|++++|.|.++++
T Consensus 71 ~~~d~illvfdis~~~ 86 (222)
T cd04173 71 PDSDAVLICFDISRPE 86 (222)
T ss_pred cCCCEEEEEEECCCHH
Confidence 5789999999988764
No 235
>PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site. The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C ....
Probab=98.62 E-value=2.7e-07 Score=72.70 Aligned_cols=82 Identities=24% Similarity=0.355 Sum_probs=53.3
Q ss_pred CCeEEEEecCCCcHHHHHHHHhhccCcee----------------ecCCCCceeE---EEEE--eeCCeEEEEECCCCCC
Q 029512 92 LPEIAFAGRSNVGKSSMLNALTRQWGVVR----------------TSDKPGLTQT---INFF--KLGTKLCLVDLPGYGF 150 (192)
Q Consensus 92 ~~~i~lvG~~n~GKStlin~L~~~~~~~~----------------~~~~~g~T~~---~~~~--~~~~~~~lvDtPG~~~ 150 (192)
..+|+++|+.++|||||+++|++...... .....+.|.+ ..+. ..+..+.++||||..
T Consensus 3 ~~~I~i~G~~~sGKTTL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~ti~~~~~~~~~~~~~~~i~~iDtPG~~- 81 (188)
T PF00009_consen 3 IRNIAIIGHVDSGKTTLLGALLGKAGAIDKRGIEETKNAFLDKHPEERERGITIDLSFISFEKNENNRKITLIDTPGHE- 81 (188)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHHHTSSSSHHHHHHHHCHHHSSHHHHHCTSSSSSEEEEEEBTESSEEEEEEEESSSH-
T ss_pred EEEEEEECCCCCCcEeechhhhhhccccccccccccccccccccchhhhcccccccccccccccccccceeeccccccc-
Confidence 35899999999999999999997531100 0011233333 2344 457899999999952
Q ss_pred CCChHHHHHHHHHHHhhhccCceeEEEEEEecCC
Q 029512 151 AYAKEEVKDAWEELVSISYRNFWSCTCFLIYIFY 184 (192)
Q Consensus 151 ~~~~~~~~~~~~~~~~l~~~~~~~~v~~vvD~s~ 184 (192)
+..... ......+|.+++|||+..
T Consensus 82 ----~f~~~~------~~~~~~~D~ailvVda~~ 105 (188)
T PF00009_consen 82 ----DFIKEM------IRGLRQADIAILVVDAND 105 (188)
T ss_dssp ----HHHHHH------HHHHTTSSEEEEEEETTT
T ss_pred ----ceeecc------cceecccccceeeeeccc
Confidence 222222 223456799999999874
No 236
>PF09439 SRPRB: Signal recognition particle receptor beta subunit; InterPro: IPR019009 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. The SR receptor is a monomer consisting of the loosely membrane-associated SR-alpha homologue FtsY, while the eukaryotic SR receptor is a heterodimer of SR-alpha (70 kDa) and SR-beta (25 kDa), both of which contain a GTP-binding domain []. SR-alpha regulates the targeting of SRP-ribosome-nascent polypeptide complexes to the translocon []. SR-alpha binds to the SRP54 subunit of the SRP complex. The SR-beta subunit is a transmembrane GTPase that anchors the SR-alpha subunit (a peripheral membrane GTPase) to the ER membrane []. SR-beta interacts with the N-terminal SRX-domain of SR-alpha, which is not present in the bacterial FtsY homologue. SR-beta also functions in recruiting the SRP-nascent polypeptide to the protein-conducting channel. The beta subunit of the signal recognition particle receptor (SRP) is a transmembrane GTPase, which anchors the alpha subunit to the endoplasmic reticulum membrane []. ; PDB: 2GED_B 1NRJ_B 2GO5_2 2FH5_B.
Probab=98.62 E-value=4.3e-08 Score=77.46 Aligned_cols=80 Identities=24% Similarity=0.283 Sum_probs=48.3
Q ss_pred CCeEEEEecCCCcHHHHHHHHhhccCceeecCCCCceeEEEEEe-----eCCeEEEEECCCCCCCCChHHHHHHHHHHHh
Q 029512 92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFK-----LGTKLCLVDLPGYGFAYAKEEVKDAWEELVS 166 (192)
Q Consensus 92 ~~~i~lvG~~n~GKStlin~L~~~~~~~~~~~~~g~T~~~~~~~-----~~~~~~lvDtPG~~~~~~~~~~~~~~~~~~~ 166 (192)
.+.|+|+|++|+|||+|+..|........+ +..+.+... .+..+.+||+||-..-. .. .+..
T Consensus 3 ~~~vlL~Gps~SGKTaLf~~L~~~~~~~T~-----tS~e~n~~~~~~~~~~~~~~lvD~PGH~rlr--~~---~~~~--- 69 (181)
T PF09439_consen 3 RPTVLLVGPSGSGKTALFSQLVNGKTVPTV-----TSMENNIAYNVNNSKGKKLRLVDIPGHPRLR--SK---LLDE--- 69 (181)
T ss_dssp --EEEEE-STTSSHHHHHHHHHHSS---B--------SSEEEECCGSSTCGTCECEEEETT-HCCC--HH---HHHH---
T ss_pred CceEEEEcCCCCCHHHHHHHHhcCCcCCee-----ccccCCceEEeecCCCCEEEEEECCCcHHHH--HH---HHHh---
Confidence 468999999999999999999986311111 112222221 35789999999964311 11 2222
Q ss_pred hhccCceeEEEEEEecCC
Q 029512 167 ISYRNFWSCTCFLIYIFY 184 (192)
Q Consensus 167 l~~~~~~~~v~~vvD~s~ 184 (192)
+.....+.+|++|||++.
T Consensus 70 ~~~~~~~k~IIfvvDSs~ 87 (181)
T PF09439_consen 70 LKYLSNAKGIIFVVDSST 87 (181)
T ss_dssp HHHHGGEEEEEEEEETTT
T ss_pred hhchhhCCEEEEEEeCcc
Confidence 123456899999999973
No 237
>cd04143 Rhes_like Rhes_like subfamily. This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression l
Probab=98.61 E-value=2.7e-07 Score=76.30 Aligned_cols=79 Identities=11% Similarity=0.128 Sum_probs=48.5
Q ss_pred eEEEEecCCCcHHHHHHHHhhccCceeecCCCCceeEE--EEEee-C--CeEEEEECCCCCCCCChHHHHHHHHHHHhhh
Q 029512 94 EIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTI--NFFKL-G--TKLCLVDLPGYGFAYAKEEVKDAWEELVSIS 168 (192)
Q Consensus 94 ~i~lvG~~n~GKStlin~L~~~~~~~~~~~~~g~T~~~--~~~~~-~--~~~~lvDtPG~~~~~~~~~~~~~~~~~~~l~ 168 (192)
+|+++|.+|||||||++.+++.. .. .....++.+. ..+.. + ..+.||||+|... ....+..
T Consensus 2 KVvvlG~~gvGKTSLi~r~~~~~-f~--~~y~pTi~d~~~k~~~i~~~~~~l~I~Dt~G~~~------~~~~~~~----- 67 (247)
T cd04143 2 RMVVLGASKVGKTAIVSRFLGGR-FE--EQYTPTIEDFHRKLYSIRGEVYQLDILDTSGNHP------FPAMRRL----- 67 (247)
T ss_pred EEEEECcCCCCHHHHHHHHHcCC-CC--CCCCCChhHhEEEEEEECCEEEEEEEEECCCChh------hhHHHHH-----
Confidence 68999999999999999998763 21 2222222221 12222 2 4678999999532 1111111
Q ss_pred ccCceeEEEEEEecCCce
Q 029512 169 YRNFWSCTCFLIYIFYTN 186 (192)
Q Consensus 169 ~~~~~~~v~~vvD~s~~~ 186 (192)
....+|++++|.|.++++
T Consensus 68 ~~~~ad~iIlVfdv~~~~ 85 (247)
T cd04143 68 SILTGDVFILVFSLDNRE 85 (247)
T ss_pred HhccCCEEEEEEeCCCHH
Confidence 124578999999987653
No 238
>cd01883 EF1_alpha Eukaryotic elongation factor 1 (EF1) alpha subfamily. EF1 is responsible for the GTP-dependent binding of aminoacyl-tRNAs to the ribosomes. EF1 is composed of four subunits: the alpha chain which binds GTP and aminoacyl-tRNAs, the gamma chain that probably plays a role in anchoring the complex to other cellular components and the beta and delta (or beta') chains. This subfamily is the alpha subunit, and represents the counterpart of bacterial EF-Tu for the archaea (aEF1-alpha) and eukaryotes (eEF1-alpha). eEF1-alpha interacts with the actin of the eukaryotic cytoskeleton and may thereby play a role in cellular transformation and apoptosis. EF-Tu can have no such role in bacteria. In humans, the isoform eEF1A2 is overexpressed in 2/3 of breast cancers and has been identified as a putative oncogene. This subfamily also includes Hbs1, a G protein known to be important for efficient growth and protein synthesis under conditions of limiting translation initiation in
Probab=98.60 E-value=1.5e-07 Score=76.21 Aligned_cols=81 Identities=16% Similarity=0.199 Sum_probs=54.0
Q ss_pred eEEEEecCCCcHHHHHHHHhhccCc-----------------------------eeecCCCCceeEEEEEe---eCCeEE
Q 029512 94 EIAFAGRSNVGKSSMLNALTRQWGV-----------------------------VRTSDKPGLTQTINFFK---LGTKLC 141 (192)
Q Consensus 94 ~i~lvG~~n~GKStlin~L~~~~~~-----------------------------~~~~~~~g~T~~~~~~~---~~~~~~ 141 (192)
+|+++|.+++|||||+.+|+..... .......|+|++..... .+..+.
T Consensus 1 nv~i~Gh~~~GKttL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~d~~~~~~~~~~~~i~ 80 (219)
T cd01883 1 NLVVIGHVDAGKSTTTGHLLYLLGGVDKRTIEKYEKEAKEMGKGSFKYAWVLDTLKEERERGVTIDVGLAKFETEKYRFT 80 (219)
T ss_pred CEEEecCCCCChHHHHHHHHHHhcCcCHHHHHHHHHHHHhcCCcchhHHhhhcCCHHHhhCccCeecceEEEeeCCeEEE
Confidence 4799999999999999999743210 00011346777764333 478899
Q ss_pred EEECCCCCCCCChHHHHHHHHHHHhhhccCceeEEEEEEecCCc
Q 029512 142 LVDLPGYGFAYAKEEVKDAWEELVSISYRNFWSCTCFLIYIFYT 185 (192)
Q Consensus 142 lvDtPG~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~~vvD~s~~ 185 (192)
++||||... . +..+ +.....+|++++|+|++..
T Consensus 81 liDtpG~~~-----~----~~~~--~~~~~~~d~~i~VvDa~~~ 113 (219)
T cd01883 81 ILDAPGHRD-----F----VPNM--ITGASQADVAVLVVDARKG 113 (219)
T ss_pred EEECCChHH-----H----HHHH--HHHhhhCCEEEEEEECCCC
Confidence 999999521 1 1122 2334568999999999874
No 239
>PRK00049 elongation factor Tu; Reviewed
Probab=98.60 E-value=1.6e-07 Score=82.72 Aligned_cols=83 Identities=17% Similarity=0.203 Sum_probs=56.5
Q ss_pred CCCeEEEEecCCCcHHHHHHHHhhccC-----ce---------eecCCCCceeEEEEEe---eCCeEEEEECCCCCCCCC
Q 029512 91 DLPEIAFAGRSNVGKSSMLNALTRQWG-----VV---------RTSDKPGLTQTINFFK---LGTKLCLVDLPGYGFAYA 153 (192)
Q Consensus 91 ~~~~i~lvG~~n~GKStlin~L~~~~~-----~~---------~~~~~~g~T~~~~~~~---~~~~~~lvDtPG~~~~~~ 153 (192)
...+|+++|..++|||||+++|++... .. ......|.|.+..... .+..+.++||||..
T Consensus 11 ~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~i~~iDtPG~~---- 86 (396)
T PRK00049 11 PHVNVGTIGHVDHGKTTLTAAITKVLAKKGGAEAKAYDQIDKAPEEKARGITINTAHVEYETEKRHYAHVDCPGHA---- 86 (396)
T ss_pred CEEEEEEEeECCCCHHHHHHHHHHhhhhccCCcccchhhccCChHHHhcCeEEeeeEEEEcCCCeEEEEEECCCHH----
Confidence 346899999999999999999997310 00 0111457787765433 35679999999962
Q ss_pred hHHHHHHHHHHHhhhccCceeEEEEEEecCC
Q 029512 154 KEEVKDAWEELVSISYRNFWSCTCFLIYIFY 184 (192)
Q Consensus 154 ~~~~~~~~~~~~~l~~~~~~~~v~~vvD~s~ 184 (192)
+..... ......+|.+++|+|+..
T Consensus 87 -~f~~~~------~~~~~~aD~~llVVDa~~ 110 (396)
T PRK00049 87 -DYVKNM------ITGAAQMDGAILVVSAAD 110 (396)
T ss_pred -HHHHHH------HhhhccCCEEEEEEECCC
Confidence 212222 233467899999999875
No 240
>COG1100 GTPase SAR1 and related small G proteins [General function prediction only]
Probab=98.59 E-value=4.1e-07 Score=72.64 Aligned_cols=80 Identities=20% Similarity=0.046 Sum_probs=47.6
Q ss_pred CeEEEEecCCCcHHHHHHHHhhccCceeecCCCCceeEEEEEee----CCeEEEEECCCCCCCCChHHHHHHHHHHHhhh
Q 029512 93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKL----GTKLCLVDLPGYGFAYAKEEVKDAWEELVSIS 168 (192)
Q Consensus 93 ~~i~lvG~~n~GKStlin~L~~~~~~~~~~~~~g~T~~~~~~~~----~~~~~lvDtPG~~~~~~~~~~~~~~~~~~~l~ 168 (192)
.+|+++|.+|||||||+|++.+.. ..........+..+..... ...+.+|||+|. +.....+..+
T Consensus 6 ~kivv~G~~g~GKTtl~~~l~~~~-~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~Dt~gq------~~~~~~~~~y---- 74 (219)
T COG1100 6 FKIVVLGDGGVGKTTLLNRLVGDE-FPEGYPPTIGNLDPAKTIEPYRRNIKLQLWDTAGQ------EEYRSLRPEY---- 74 (219)
T ss_pred EEEEEEcCCCccHHHHHHHHhcCc-CcccCCCceeeeeEEEEEEeCCCEEEEEeecCCCH------HHHHHHHHHH----
Confidence 589999999999999999999874 2222221112222222222 245899999994 2233333222
Q ss_pred ccCceeEEEEEEecCC
Q 029512 169 YRNFWSCTCFLIYIFY 184 (192)
Q Consensus 169 ~~~~~~~v~~vvD~s~ 184 (192)
....++++++.|...
T Consensus 75 -~~~~~~~l~~~d~~~ 89 (219)
T COG1100 75 -YRGANGILIVYDSTL 89 (219)
T ss_pred -hcCCCEEEEEEeccc
Confidence 234566666666554
No 241
>PRK10512 selenocysteinyl-tRNA-specific translation factor; Provisional
Probab=98.56 E-value=3.2e-07 Score=84.92 Aligned_cols=79 Identities=23% Similarity=0.267 Sum_probs=55.1
Q ss_pred eEEEEecCCCcHHHHHHHHhhccCcee--ecCCCCceeEEEEEe----eCCeEEEEECCCCCCCCChHHHHHHHHHHHhh
Q 029512 94 EIAFAGRSNVGKSSMLNALTRQWGVVR--TSDKPGLTQTINFFK----LGTKLCLVDLPGYGFAYAKEEVKDAWEELVSI 167 (192)
Q Consensus 94 ~i~lvG~~n~GKStlin~L~~~~~~~~--~~~~~g~T~~~~~~~----~~~~~~lvDtPG~~~~~~~~~~~~~~~~~~~l 167 (192)
.|+++|..++|||||+|+|+|.. ... .....|.|.+..+.. .+..+.+|||||.. +....+ +
T Consensus 2 ii~~~GhvdhGKTtLi~aLtg~~-~dr~~eE~~rGiTI~l~~~~~~~~~g~~i~~IDtPGhe-----~fi~~m------~ 69 (614)
T PRK10512 2 IIATAGHVDHGKTTLLQAITGVN-ADRLPEEKKRGMTIDLGYAYWPQPDGRVLGFIDVPGHE-----KFLSNM------L 69 (614)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC-CccchhcccCCceEEeeeEEEecCCCcEEEEEECCCHH-----HHHHHH------H
Confidence 58999999999999999999852 111 223357888775443 25678999999951 111222 3
Q ss_pred hccCceeEEEEEEecCC
Q 029512 168 SYRNFWSCTCFLIYIFY 184 (192)
Q Consensus 168 ~~~~~~~~v~~vvD~s~ 184 (192)
.....+|++++|+|+..
T Consensus 70 ~g~~~~D~~lLVVda~e 86 (614)
T PRK10512 70 AGVGGIDHALLVVACDD 86 (614)
T ss_pred HHhhcCCEEEEEEECCC
Confidence 33456899999999875
No 242
>PF00071 Ras: Ras family; InterPro: IPR001806 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction; PDB: 1M7B_A 2V55_B 3EG5_C 3LAW_A 1YHN_A 1T91_B 1HE8_B 3SEA_B 3T5G_A 1XTS_A ....
Probab=98.55 E-value=5.4e-07 Score=68.36 Aligned_cols=82 Identities=16% Similarity=0.080 Sum_probs=49.0
Q ss_pred eEEEEecCCCcHHHHHHHHhhccCceeecCCCCceeEEEEEe---eCCeEEEEECCCCCCCCChHHHHHHHHHHHhhhcc
Q 029512 94 EIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFK---LGTKLCLVDLPGYGFAYAKEEVKDAWEELVSISYR 170 (192)
Q Consensus 94 ~i~lvG~~n~GKStlin~L~~~~~~~~~~~~~g~T~~~~~~~---~~~~~~lvDtPG~~~~~~~~~~~~~~~~~~~l~~~ 170 (192)
+|+++|.+++|||||++.+.+........+..|......... ....+.+||++|-.. -+. ....+ .
T Consensus 1 Ki~vvG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~---~~~---~~~~~-----~ 69 (162)
T PF00071_consen 1 KIVVVGDSGVGKTSLINRLINGEFPENYIPTIGIDSYSKEVSIDGKPVNLEIWDTSGQER---FDS---LRDIF-----Y 69 (162)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSSTTSSSETTSSEEEEEEEEEETTEEEEEEEEEETTSGG---GHH---HHHHH-----H
T ss_pred CEEEECCCCCCHHHHHHHHHhhcccccccccccccccccccccccccccccccccccccc---ccc---ccccc-----c
Confidence 589999999999999999998631111112222222211111 245699999999421 111 11111 3
Q ss_pred CceeEEEEEEecCCce
Q 029512 171 NFWSCTCFLIYIFYTN 186 (192)
Q Consensus 171 ~~~~~v~~vvD~s~~~ 186 (192)
+.+|+++++.|..+++
T Consensus 70 ~~~~~~ii~fd~~~~~ 85 (162)
T PF00071_consen 70 RNSDAIIIVFDVTDEE 85 (162)
T ss_dssp TTESEEEEEEETTBHH
T ss_pred cccccccccccccccc
Confidence 4678889988887654
No 243
>PLN03127 Elongation factor Tu; Provisional
Probab=98.54 E-value=6e-07 Score=80.25 Aligned_cols=83 Identities=16% Similarity=0.139 Sum_probs=55.5
Q ss_pred CCCeEEEEecCCCcHHHHHHHHhhcc-----Cce---------eecCCCCceeEEEEEe---eCCeEEEEECCCCCCCCC
Q 029512 91 DLPEIAFAGRSNVGKSSMLNALTRQW-----GVV---------RTSDKPGLTQTINFFK---LGTKLCLVDLPGYGFAYA 153 (192)
Q Consensus 91 ~~~~i~lvG~~n~GKStlin~L~~~~-----~~~---------~~~~~~g~T~~~~~~~---~~~~~~lvDtPG~~~~~~ 153 (192)
...+|+++|+.++|||||+++|++.. ... ......|.|.+..... .+.++.++||||...
T Consensus 60 ~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~~~i~~iDtPGh~~--- 136 (447)
T PLN03127 60 PHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAVAFDEIDKAPEEKARGITIATAHVEYETAKRHYAHVDCPGHAD--- 136 (447)
T ss_pred ceEEEEEECcCCCCHHHHHHHHHhHHHHhhcccceeeccccCChhHhhcCceeeeeEEEEcCCCeEEEEEECCCccc---
Confidence 35689999999999999999998421 000 0112367888865433 356899999999742
Q ss_pred hHHHHHHHHHHHhhhccCceeEEEEEEecCC
Q 029512 154 KEEVKDAWEELVSISYRNFWSCTCFLIYIFY 184 (192)
Q Consensus 154 ~~~~~~~~~~~~~l~~~~~~~~v~~vvD~s~ 184 (192)
.+.+++. ....+|.+++|+|+..
T Consensus 137 --f~~~~~~------g~~~aD~allVVda~~ 159 (447)
T PLN03127 137 --YVKNMIT------GAAQMDGGILVVSAPD 159 (447)
T ss_pred --hHHHHHH------HHhhCCEEEEEEECCC
Confidence 2222221 2234899999999864
No 244
>PTZ00132 GTP-binding nuclear protein Ran; Provisional
Probab=98.54 E-value=7.4e-07 Score=71.51 Aligned_cols=83 Identities=11% Similarity=-0.001 Sum_probs=47.6
Q ss_pred CCCeEEEEecCCCcHHHHHHHHhhccCceeecCCCCceeEEEEEe---eCCeEEEEECCCCCCCCChHHHHHHHHHHHhh
Q 029512 91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFK---LGTKLCLVDLPGYGFAYAKEEVKDAWEELVSI 167 (192)
Q Consensus 91 ~~~~i~lvG~~n~GKStlin~L~~~~~~~~~~~~~g~T~~~~~~~---~~~~~~lvDtPG~~~~~~~~~~~~~~~~~~~l 167 (192)
...+|+++|.+|||||||++.+..........++.+.......+. ....+.+|||||-.. ....+..+
T Consensus 8 ~~~kv~liG~~g~GKTtLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~i~~~Dt~g~~~------~~~~~~~~--- 78 (215)
T PTZ00132 8 PEFKLILVGDGGVGKTTFVKRHLTGEFEKKYIPTLGVEVHPLKFYTNCGPICFNVWDTAGQEK------FGGLRDGY--- 78 (215)
T ss_pred CCceEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEEECCeEEEEEEEECCCchh------hhhhhHHH---
Confidence 456999999999999999975543311122223333333222221 246789999999421 11112111
Q ss_pred hccCceeEEEEEEecCC
Q 029512 168 SYRNFWSCTCFLIYIFY 184 (192)
Q Consensus 168 ~~~~~~~~v~~vvD~s~ 184 (192)
....+.++++.|.+.
T Consensus 79 --~~~~~~~i~v~d~~~ 93 (215)
T PTZ00132 79 --YIKGQCAIIMFDVTS 93 (215)
T ss_pred --hccCCEEEEEEECcC
Confidence 234577888888764
No 245
>TIGR00483 EF-1_alpha translation elongation factor EF-1 alpha. This model represents the counterpart of bacterial EF-Tu for the Archaea (aEF-1 alpha) and Eukaryotes (eEF-1 alpha). The trusted cutoff is set fairly high so that incomplete sequences will score between suggested and trusted cutoff levels.
Probab=98.53 E-value=4.7e-07 Score=80.27 Aligned_cols=84 Identities=19% Similarity=0.304 Sum_probs=56.9
Q ss_pred CCCeEEEEecCCCcHHHHHHHHhhccCcee-----------------------------ecCCCCceeEEEEEe---eCC
Q 029512 91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVR-----------------------------TSDKPGLTQTINFFK---LGT 138 (192)
Q Consensus 91 ~~~~i~lvG~~n~GKStlin~L~~~~~~~~-----------------------------~~~~~g~T~~~~~~~---~~~ 138 (192)
...+|+++|..++|||||+++|+....... .....|+|.+..... .+.
T Consensus 6 ~~~~v~i~Ghvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~rg~Tid~~~~~~~~~~~ 85 (426)
T TIGR00483 6 EHINVAFIGHVDHGKSTTVGHLLYKCGAIDEQTIEKFEKEAQEKGKASFEFAWVMDRLKEERERGVTIDVAHWKFETDKY 85 (426)
T ss_pred ceeEEEEEeccCCcHHHHHHHHHHHhCCcCHHHHHHHHhHHHhcCCcccchhhhhccCHHHhhcCceEEEEEEEEccCCe
Confidence 456899999999999999999985321000 011336777765433 367
Q ss_pred eEEEEECCCCCCCCChHHHHHHHHHHHhhhccCceeEEEEEEecCCc
Q 029512 139 KLCLVDLPGYGFAYAKEEVKDAWEELVSISYRNFWSCTCFLIYIFYT 185 (192)
Q Consensus 139 ~~~lvDtPG~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~~vvD~s~~ 185 (192)
.+.+|||||.. + .+..+ +.....+|++++|+|+++.
T Consensus 86 ~i~iiDtpGh~-----~----f~~~~--~~~~~~aD~~ilVvDa~~~ 121 (426)
T TIGR00483 86 EVTIVDCPGHR-----D----FIKNM--ITGASQADAAVLVVAVGDG 121 (426)
T ss_pred EEEEEECCCHH-----H----HHHHH--HhhhhhCCEEEEEEECCCC
Confidence 89999999942 1 12222 2334678999999999876
No 246
>TIGR00484 EF-G translation elongation factor EF-G. After peptide bond formation, this elongation factor of bacteria and organelles catalyzes the translocation of the tRNA-mRNA complex, with its attached nascent polypeptide chain, from the A-site to the P-site of the ribosome. Every completed bacterial genome has at least one copy, but some species have additional EF-G-like proteins. The closest homolog to canonical (e.g. E. coli) EF-G in the spirochetes clusters as if it is derived from mitochondrial forms, while a more distant second copy is also present. Synechocystis PCC6803 has a few proteins more closely related to EF-G than to any other characterized protein. Two of these resemble E. coli EF-G more closely than does the best match from the spirochetes; it may be that both function as authentic EF-G.
Probab=98.53 E-value=2.5e-07 Score=86.78 Aligned_cols=83 Identities=16% Similarity=0.155 Sum_probs=55.2
Q ss_pred CCCeEEEEecCCCcHHHHHHHHhhccCc----eeecC------------CCCceeEEE---EEeeCCeEEEEECCCCCCC
Q 029512 91 DLPEIAFAGRSNVGKSSMLNALTRQWGV----VRTSD------------KPGLTQTIN---FFKLGTKLCLVDLPGYGFA 151 (192)
Q Consensus 91 ~~~~i~lvG~~n~GKStlin~L~~~~~~----~~~~~------------~~g~T~~~~---~~~~~~~~~lvDtPG~~~~ 151 (192)
...+|+++|++|+|||||+|+|+..... ..+.+ ..|+|.+.. +.+.+..+.++||||..+.
T Consensus 9 ~irni~iiG~~~~GKsTL~~~ll~~~g~~~~~~~~~~g~~~~D~~~~e~~rgiti~~~~~~~~~~~~~i~liDTPG~~~~ 88 (689)
T TIGR00484 9 RFRNIGISAHIDAGKTTTTERILFYTGRIHKIGEVHDGAATMDWMEQEKERGITITSAATTVFWKGHRINIIDTPGHVDF 88 (689)
T ss_pred cccEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCCHHHHhcCCCEecceEEEEECCeEEEEEECCCCcch
Confidence 4569999999999999999999753211 11111 245666543 3345789999999998641
Q ss_pred CChHHHHHHHHHHHhhhccCceeEEEEEEecCC
Q 029512 152 YAKEEVKDAWEELVSISYRNFWSCTCFLIYIFY 184 (192)
Q Consensus 152 ~~~~~~~~~~~~~~~l~~~~~~~~v~~vvD~s~ 184 (192)
. .... ...+.+|++++|+|+..
T Consensus 89 ~-----~~~~------~~l~~~D~~ilVvda~~ 110 (689)
T TIGR00484 89 T-----VEVE------RSLRVLDGAVAVLDAVG 110 (689)
T ss_pred h-----HHHH------HHHHHhCEEEEEEeCCC
Confidence 1 1111 11234699999999875
No 247
>cd04167 Snu114p Snu114p subfamily. Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs.
Probab=98.52 E-value=1.6e-07 Score=75.58 Aligned_cols=81 Identities=17% Similarity=0.215 Sum_probs=48.6
Q ss_pred eEEEEecCCCcHHHHHHHHhhccCceee--c---------------CCCCceeEEE---EEe-----eCCeEEEEECCCC
Q 029512 94 EIAFAGRSNVGKSSMLNALTRQWGVVRT--S---------------DKPGLTQTIN---FFK-----LGTKLCLVDLPGY 148 (192)
Q Consensus 94 ~i~lvG~~n~GKStlin~L~~~~~~~~~--~---------------~~~g~T~~~~---~~~-----~~~~~~lvDtPG~ 148 (192)
+|+++|.+|+|||||+++|+........ . ...|.|.+.. +.. ....+.++||||.
T Consensus 2 nv~iiG~~~~GKTtL~~~l~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~giti~~~~~~~~~~~~~~~~~~i~iiDtpG~ 81 (213)
T cd04167 2 NVAIAGHLHHGKTSLLDMLIEQTHDLTPSGKDGWKPLRYTDIRKDEQERGISIKSSPISLVLPDSKGKSYLFNIIDTPGH 81 (213)
T ss_pred cEEEEcCCCCCHHHHHHHHHHhcCCCcccccccCCceeECCCCHHHHHcCccccccceeEEEEcCCCCEEEEEEEECCCC
Confidence 6899999999999999999975321100 0 0112232211 111 1357899999997
Q ss_pred CCCCChHHHHHHHHHHHhhhccCceeEEEEEEecCCc
Q 029512 149 GFAYAKEEVKDAWEELVSISYRNFWSCTCFLIYIFYT 185 (192)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~l~~~~~~~~v~~vvD~s~~ 185 (192)
..-. ... ......+|++++|+|++..
T Consensus 82 ~~f~------~~~-----~~~~~~aD~~llVvD~~~~ 107 (213)
T cd04167 82 VNFM------DEV-----AAALRLSDGVVLVVDVVEG 107 (213)
T ss_pred cchH------HHH-----HHHHHhCCEEEEEEECCCC
Confidence 5310 111 1223457999999998654
No 248
>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional
Probab=98.52 E-value=1.7e-07 Score=86.99 Aligned_cols=82 Identities=18% Similarity=0.209 Sum_probs=52.7
Q ss_pred CCCeEEEEecCCCcHHHHHHHHhhccCceee----------cCCC----------------------CceeEEEEE---e
Q 029512 91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRT----------SDKP----------------------GLTQTINFF---K 135 (192)
Q Consensus 91 ~~~~i~lvG~~n~GKStlin~L~~~~~~~~~----------~~~~----------------------g~T~~~~~~---~ 135 (192)
...+|+++|.+|+|||||+|+|+.... ..+ +... |.|.+..+. .
T Consensus 23 ~~~~i~iiGh~~~GKSTL~~~Ll~~~~-~i~~~~~~~~~~~~~~~g~tr~~~~~~~~~d~~~~E~~rg~Tid~~~~~~~~ 101 (632)
T PRK05506 23 SLLRFITCGSVDDGKSTLIGRLLYDSK-MIFEDQLAALERDSKKVGTQGDEIDLALLVDGLAAEREQGITIDVAYRYFAT 101 (632)
T ss_pred CeeEEEEECCCCCChHHHHHHHHHHhC-CcCHHHHHHHHHHHHhcCCCCCcceeeeeccCCHHHHhCCcCceeeeeEEcc
Confidence 345899999999999999999997532 111 1122 344444322 2
Q ss_pred eCCeEEEEECCCCCCCCChHHHHHHHHHHHhhhccCceeEEEEEEecCC
Q 029512 136 LGTKLCLVDLPGYGFAYAKEEVKDAWEELVSISYRNFWSCTCFLIYIFY 184 (192)
Q Consensus 136 ~~~~~~lvDtPG~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~~vvD~s~ 184 (192)
.+.++.++||||.. +..... ......+|++++|+|+..
T Consensus 102 ~~~~~~liDtPG~~-----~f~~~~------~~~~~~aD~~llVvda~~ 139 (632)
T PRK05506 102 PKRKFIVADTPGHE-----QYTRNM------VTGASTADLAIILVDARK 139 (632)
T ss_pred CCceEEEEECCChH-----HHHHHH------HHHHHhCCEEEEEEECCC
Confidence 36689999999942 111111 223456899999999853
No 249
>PRK12736 elongation factor Tu; Reviewed
Probab=98.50 E-value=5e-07 Score=79.45 Aligned_cols=83 Identities=18% Similarity=0.226 Sum_probs=55.9
Q ss_pred CCCeEEEEecCCCcHHHHHHHHhhccCc-----ee---------ecCCCCceeEEEEEe---eCCeEEEEECCCCCCCCC
Q 029512 91 DLPEIAFAGRSNVGKSSMLNALTRQWGV-----VR---------TSDKPGLTQTINFFK---LGTKLCLVDLPGYGFAYA 153 (192)
Q Consensus 91 ~~~~i~lvG~~n~GKStlin~L~~~~~~-----~~---------~~~~~g~T~~~~~~~---~~~~~~lvDtPG~~~~~~ 153 (192)
...+|+++|+.++|||||+++|++.... .. .....|.|.+..... .+..+.++||||..
T Consensus 11 ~~~ni~i~Ghvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~~~~~~~~~~~~~~i~~iDtPGh~---- 86 (394)
T PRK12736 11 PHVNIGTIGHVDHGKTTLTAAITKVLAERGLNQAKDYDSIDAAPEEKERGITINTAHVEYETEKRHYAHVDCPGHA---- 86 (394)
T ss_pred CeeEEEEEccCCCcHHHHHHHHHhhhhhhccccccchhhhcCCHHHHhcCccEEEEeeEecCCCcEEEEEECCCHH----
Confidence 4568999999999999999999974210 00 011457787765333 35689999999942
Q ss_pred hHHHHHHHHHHHhhhccCceeEEEEEEecCC
Q 029512 154 KEEVKDAWEELVSISYRNFWSCTCFLIYIFY 184 (192)
Q Consensus 154 ~~~~~~~~~~~~~l~~~~~~~~v~~vvD~s~ 184 (192)
+.+... +.....+|.+++|+|+..
T Consensus 87 -~f~~~~------~~~~~~~d~~llVvd~~~ 110 (394)
T PRK12736 87 -DYVKNM------ITGAAQMDGAILVVAATD 110 (394)
T ss_pred -HHHHHH------HHHHhhCCEEEEEEECCC
Confidence 222222 333456899999999875
No 250
>PRK01889 GTPase RsgA; Reviewed
Probab=98.50 E-value=1.2e-07 Score=82.46 Aligned_cols=74 Identities=26% Similarity=0.298 Sum_probs=48.4
Q ss_pred CCeEEEEecCCCcHHHHHHHHhhccCceeecC-------CCCceeEEEEEeeCCeEEEEECCCCCC---CCChHHHHHHH
Q 029512 92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSD-------KPGLTQTINFFKLGTKLCLVDLPGYGF---AYAKEEVKDAW 161 (192)
Q Consensus 92 ~~~i~lvG~~n~GKStlin~L~~~~~~~~~~~-------~~g~T~~~~~~~~~~~~~lvDtPG~~~---~~~~~~~~~~~ 161 (192)
...++++|.+|+|||||+|.|++... ..++. ...+|+..+.........++||||+.. ....+.+...|
T Consensus 195 g~~~~lvG~sgvGKStLin~L~g~~~-~~~G~i~~~~~~g~~tt~~~~l~~l~~~~~l~DtpG~~~~~l~~~~~~l~~~f 273 (356)
T PRK01889 195 GKTVALLGSSGVGKSTLVNALLGEEV-QKTGAVREDDSKGRHTTTHRELHPLPSGGLLIDTPGMRELQLWDAEDGVEETF 273 (356)
T ss_pred CCEEEEECCCCccHHHHHHHHHHhcc-cceeeEEECCCCCcchhhhccEEEecCCCeecCCCchhhhcccCchhhHHHhH
Confidence 45899999999999999999998632 21211 123555555656555567899999843 22334455556
Q ss_pred HHHHh
Q 029512 162 EELVS 166 (192)
Q Consensus 162 ~~~~~ 166 (192)
.++..
T Consensus 274 ~~~~~ 278 (356)
T PRK01889 274 SDIEE 278 (356)
T ss_pred HHHHH
Confidence 66544
No 251
>TIGR00485 EF-Tu translation elongation factor TU. This alignment models orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts, one of several GTP-binding translation factors found by the more general pfam model GTP_EFTU. The eukaryotic conterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this model. EF-Tu is one of the most abundant proteins in bacteria, as well as one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=98.49 E-value=6.9e-07 Score=78.50 Aligned_cols=83 Identities=17% Similarity=0.192 Sum_probs=55.6
Q ss_pred CCCeEEEEecCCCcHHHHHHHHhhcc-----Cce---------eecCCCCceeEEEEEee---CCeEEEEECCCCCCCCC
Q 029512 91 DLPEIAFAGRSNVGKSSMLNALTRQW-----GVV---------RTSDKPGLTQTINFFKL---GTKLCLVDLPGYGFAYA 153 (192)
Q Consensus 91 ~~~~i~lvG~~n~GKStlin~L~~~~-----~~~---------~~~~~~g~T~~~~~~~~---~~~~~lvDtPG~~~~~~ 153 (192)
...+|+++|..++|||||+++|++.. ... ......|.|.+...... +..+.++||||...
T Consensus 11 ~~~~i~i~Ghvd~GKStL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rG~Ti~~~~~~~~~~~~~~~liDtpGh~~--- 87 (394)
T TIGR00485 11 PHVNIGTIGHVDHGKTTLTAAITTVLAKEGGAAARAYDQIDNAPEEKARGITINTAHVEYETENRHYAHVDCPGHAD--- 87 (394)
T ss_pred ceEEEEEEeecCCCHHHHHHHHHhhHHHhhcccccccccccCCHHHHhcCcceeeEEEEEcCCCEEEEEEECCchHH---
Confidence 35689999999999999999998531 000 00123577877654332 56799999999531
Q ss_pred hHHHHHHHHHHHhhhccCceeEEEEEEecCC
Q 029512 154 KEEVKDAWEELVSISYRNFWSCTCFLIYIFY 184 (192)
Q Consensus 154 ~~~~~~~~~~~~~l~~~~~~~~v~~vvD~s~ 184 (192)
.. ..+ +.....+|.+++|+|+..
T Consensus 88 --f~----~~~--~~~~~~~D~~ilVvda~~ 110 (394)
T TIGR00485 88 --YV----KNM--ITGAAQMDGAILVVSATD 110 (394)
T ss_pred --HH----HHH--HHHHhhCCEEEEEEECCC
Confidence 11 222 333457899999999875
No 252
>cd04133 Rop_like Rop subfamily. The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example,
Probab=98.47 E-value=1.1e-06 Score=69.03 Aligned_cols=83 Identities=16% Similarity=-0.021 Sum_probs=49.0
Q ss_pred CeEEEEecCCCcHHHHHHHHhhccCceeecCCCCceeEEEEEe--eCCeEEEEECCCCCCCCChHHHHHHHHHHHhhhcc
Q 029512 93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFK--LGTKLCLVDLPGYGFAYAKEEVKDAWEELVSISYR 170 (192)
Q Consensus 93 ~~i~lvG~~n~GKStlin~L~~~~~~~~~~~~~g~T~~~~~~~--~~~~~~lvDtPG~~~~~~~~~~~~~~~~~~~l~~~ 170 (192)
.+++++|.+|||||||+..+..........++.+.+....... ....+.+|||+|-.. +..+.. ...
T Consensus 2 ~kivv~G~~~vGKTsli~~~~~~~f~~~~~~Ti~~~~~~~~~~~~~~v~l~i~Dt~G~~~----------~~~~~~-~~~ 70 (176)
T cd04133 2 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVSVDGNTVNLGLWDTAGQED----------YNRLRP-LSY 70 (176)
T ss_pred eEEEEECCCCCcHHHHHHHHhcCCCCCCCCCcceeeeEEEEEECCEEEEEEEEECCCCcc----------ccccch-hhc
Confidence 4799999999999999999997631111122222222111111 235789999999432 111111 123
Q ss_pred CceeEEEEEEecCCce
Q 029512 171 NFWSCTCFLIYIFYTN 186 (192)
Q Consensus 171 ~~~~~v~~vvD~s~~~ 186 (192)
+.++++++|.|.++++
T Consensus 71 ~~a~~~ilvyd~~~~~ 86 (176)
T cd04133 71 RGADVFVLAFSLISRA 86 (176)
T ss_pred CCCcEEEEEEEcCCHH
Confidence 5678888888876654
No 253
>PRK00007 elongation factor G; Reviewed
Probab=98.47 E-value=8.5e-07 Score=83.23 Aligned_cols=82 Identities=13% Similarity=0.131 Sum_probs=54.6
Q ss_pred CCCeEEEEecCCCcHHHHHHHHhhccC----ceeec------------CCCCceeEEE---EEeeCCeEEEEECCCCCCC
Q 029512 91 DLPEIAFAGRSNVGKSSMLNALTRQWG----VVRTS------------DKPGLTQTIN---FFKLGTKLCLVDLPGYGFA 151 (192)
Q Consensus 91 ~~~~i~lvG~~n~GKStlin~L~~~~~----~~~~~------------~~~g~T~~~~---~~~~~~~~~lvDtPG~~~~ 151 (192)
...+|+++|++|+|||||+|+|+.... ...++ ...|+|.+.. +.+.+..+.++||||..+
T Consensus 9 ~Irni~iiG~~~~GKsTL~~~ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rg~ti~~~~~~~~~~~~~~~liDTPG~~~- 87 (693)
T PRK00007 9 RYRNIGIMAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTCFWKDHRINIIDTPGHVD- 87 (693)
T ss_pred ceeEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCcccCCCCHHHHhCCCCEeccEEEEEECCeEEEEEeCCCcHH-
Confidence 456999999999999999999974221 11122 2446676543 334588999999999642
Q ss_pred CChHHHHHHHHHHHhhhccCceeEEEEEEecC
Q 029512 152 YAKEEVKDAWEELVSISYRNFWSCTCFLIYIF 183 (192)
Q Consensus 152 ~~~~~~~~~~~~~~~l~~~~~~~~v~~vvD~s 183 (192)
...+. ......+|++++|+|+.
T Consensus 88 ----f~~ev------~~al~~~D~~vlVvda~ 109 (693)
T PRK00007 88 ----FTIEV------ERSLRVLDGAVAVFDAV 109 (693)
T ss_pred ----HHHHH------HHHHHHcCEEEEEEECC
Confidence 11122 12234568999999985
No 254
>PRK12739 elongation factor G; Reviewed
Probab=98.47 E-value=7.9e-07 Score=83.42 Aligned_cols=83 Identities=16% Similarity=0.167 Sum_probs=55.2
Q ss_pred CCCeEEEEecCCCcHHHHHHHHhhccC----ceeecC------------CCCceeEEE---EEeeCCeEEEEECCCCCCC
Q 029512 91 DLPEIAFAGRSNVGKSSMLNALTRQWG----VVRTSD------------KPGLTQTIN---FFKLGTKLCLVDLPGYGFA 151 (192)
Q Consensus 91 ~~~~i~lvG~~n~GKStlin~L~~~~~----~~~~~~------------~~g~T~~~~---~~~~~~~~~lvDtPG~~~~ 151 (192)
...+|+++|..|+|||||+|+|+.... ...+.+ ..|+|.+.. +.+.+..+.++||||..+
T Consensus 7 ~irni~iiGh~~~GKsTL~~~ll~~~g~~~~~~~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~i~liDTPG~~~- 85 (691)
T PRK12739 7 KTRNIGIMAHIDAGKTTTTERILYYTGKSHKIGEVHDGAATMDWMEQEQERGITITSAATTCFWKGHRINIIDTPGHVD- 85 (691)
T ss_pred CeeEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCChhHhhcCCCccceeEEEEECCEEEEEEcCCCHHH-
Confidence 456899999999999999999985321 111221 345666543 334588999999999632
Q ss_pred CChHHHHHHHHHHHhhhccCceeEEEEEEecCC
Q 029512 152 YAKEEVKDAWEELVSISYRNFWSCTCFLIYIFY 184 (192)
Q Consensus 152 ~~~~~~~~~~~~~~~l~~~~~~~~v~~vvD~s~ 184 (192)
...+. ....+.+|++++|+|+..
T Consensus 86 ----f~~e~------~~al~~~D~~ilVvDa~~ 108 (691)
T PRK12739 86 ----FTIEV------ERSLRVLDGAVAVFDAVS 108 (691)
T ss_pred ----HHHHH------HHHHHHhCeEEEEEeCCC
Confidence 11122 222345699999999864
No 255
>TIGR01393 lepA GTP-binding protein LepA. LepA (GUF1 in Saccaromyces) is a GTP-binding membrane protein related to EF-G and EF-Tu. Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including GUF1 of yeast) originated within the bacterial LepA family. The function is unknown.
Probab=98.43 E-value=1.4e-06 Score=80.37 Aligned_cols=82 Identities=18% Similarity=0.159 Sum_probs=52.0
Q ss_pred CeEEEEecCCCcHHHHHHHHhhccCc-------eeecC------CCCceeEEEEEee-----C---CeEEEEECCCCCCC
Q 029512 93 PEIAFAGRSNVGKSSMLNALTRQWGV-------VRTSD------KPGLTQTINFFKL-----G---TKLCLVDLPGYGFA 151 (192)
Q Consensus 93 ~~i~lvG~~n~GKStlin~L~~~~~~-------~~~~~------~~g~T~~~~~~~~-----~---~~~~lvDtPG~~~~ 151 (192)
.+++++|..++|||||+++|+..... ....+ ..|.|........ + ..+.||||||..+
T Consensus 4 RNi~IIGh~d~GKTTL~~rLl~~~g~i~~~~~~~~~~D~~~~ErerGiTi~~~~v~~~~~~~~g~~~~l~liDTPG~~d- 82 (595)
T TIGR01393 4 RNFSIIAHIDHGKSTLADRLLEYTGAISEREMREQVLDSMDLERERGITIKAQAVRLNYKAKDGETYVLNLIDTPGHVD- 82 (595)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHcCCCccccccccccCCChHHHhcCCCeeeeEEEEEEEcCCCCEEEEEEEECCCcHH-
Confidence 48999999999999999999875210 01111 1256655432211 2 5789999999753
Q ss_pred CChHHHHHHHHHHHhhhccCceeEEEEEEecCCc
Q 029512 152 YAKEEVKDAWEELVSISYRNFWSCTCFLIYIFYT 185 (192)
Q Consensus 152 ~~~~~~~~~~~~~~~l~~~~~~~~v~~vvD~s~~ 185 (192)
....+... .+.+|++++|+|++..
T Consensus 83 -----F~~~v~~~-----l~~aD~aILVvDat~g 106 (595)
T TIGR01393 83 -----FSYEVSRS-----LAACEGALLLVDAAQG 106 (595)
T ss_pred -----HHHHHHHH-----HHhCCEEEEEecCCCC
Confidence 11122222 2357999999999763
No 256
>cd04103 Centaurin_gamma Centaurin gamma. The centaurins (alpha, beta, gamma, and delta) are large, multi-domain proteins that all contain an ArfGAP domain and ankyrin repeats, and in some cases, numerous additional domains. Centaurin gamma contains an additional GTPase domain near its N-terminus. The specific function of this GTPase domain has not been well characterized, but centaurin gamma 2 (CENTG2) may play a role in the development of autism. Centaurin gamma 1 is also called PIKE (phosphatidyl inositol (PI) 3-kinase enhancer) and centaurin gamma 2 is also known as AGAP (ArfGAP protein with a GTPase-like domain, ankyrin repeats and a Pleckstrin homology domain) or GGAP. Three isoforms of PIKE have been identified. PIKE-S (short) and PIKE-L (long) are brain-specific isoforms, with PIKE-S restricted to the nucleus and PIKE-L found in multiple cellular compartments. A third isoform, PIKE-A was identified in human glioblastoma brain cancers and has been found in various tissues.
Probab=98.43 E-value=1.6e-06 Score=66.54 Aligned_cols=75 Identities=16% Similarity=0.188 Sum_probs=43.7
Q ss_pred eEEEEecCCCcHHHHHHHHhhccCceeecCCCC-ceeEEEEEeeC--CeEEEEECCCCCCCCChHHHHHHHHHHHhhhcc
Q 029512 94 EIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPG-LTQTINFFKLG--TKLCLVDLPGYGFAYAKEEVKDAWEELVSISYR 170 (192)
Q Consensus 94 ~i~lvG~~n~GKStlin~L~~~~~~~~~~~~~g-~T~~~~~~~~~--~~~~lvDtPG~~~~~~~~~~~~~~~~~~~l~~~ 170 (192)
+|+++|.+|||||||++.+..........+..+ .+.. ....+ ..+.+|||+|-.. . .+ .
T Consensus 2 ki~vvG~~gvGKTsli~~~~~~~f~~~~~~~~~~~~~~--i~~~~~~~~l~i~D~~g~~~----~-------~~-----~ 63 (158)
T cd04103 2 KLGIVGNLQSGKSALVHRYLTGSYVQLESPEGGRFKKE--VLVDGQSHLLLIRDEGGAPD----A-------QF-----A 63 (158)
T ss_pred EEEEECCCCCcHHHHHHHHHhCCCCCCCCCCccceEEE--EEECCEEEEEEEEECCCCCc----h-------hH-----H
Confidence 689999999999999998776421111111111 1111 11123 4588999999632 0 01 1
Q ss_pred CceeEEEEEEecCCce
Q 029512 171 NFWSCTCFLIYIFYTN 186 (192)
Q Consensus 171 ~~~~~v~~vvD~s~~~ 186 (192)
+.+|++++|.|.++++
T Consensus 64 ~~~~~~ilv~d~~~~~ 79 (158)
T cd04103 64 SWVDAVIFVFSLENEA 79 (158)
T ss_pred hcCCEEEEEEECCCHH
Confidence 3457777777766553
No 257
>PLN03126 Elongation factor Tu; Provisional
Probab=98.42 E-value=1.8e-06 Score=77.84 Aligned_cols=83 Identities=19% Similarity=0.177 Sum_probs=54.9
Q ss_pred CCCeEEEEecCCCcHHHHHHHHhhccCc--------------eeecCCCCceeEEEEE---eeCCeEEEEECCCCCCCCC
Q 029512 91 DLPEIAFAGRSNVGKSSMLNALTRQWGV--------------VRTSDKPGLTQTINFF---KLGTKLCLVDLPGYGFAYA 153 (192)
Q Consensus 91 ~~~~i~lvG~~n~GKStlin~L~~~~~~--------------~~~~~~~g~T~~~~~~---~~~~~~~lvDtPG~~~~~~ 153 (192)
+..+++++|.+++|||||+++|++.... .......|.|.+.... ..+..+.++||||..
T Consensus 80 ~~~ni~iiGhvd~GKSTLi~~Ll~~~~~i~~~~~~~~~~~D~~~~Er~rGiTi~~~~~~~~~~~~~i~liDtPGh~---- 155 (478)
T PLN03126 80 PHVNIGTIGHVDHGKTTLTAALTMALASMGGSAPKKYDEIDAAPEERARGITINTATVEYETENRHYAHVDCPGHA---- 155 (478)
T ss_pred CeeEEEEECCCCCCHHHHHHHHHHhhhhhccccccccccccCChhHHhCCeeEEEEEEEEecCCcEEEEEECCCHH----
Confidence 4568999999999999999999963210 0112234667665432 247789999999953
Q ss_pred hHHHHHHHHHHHhhhccCceeEEEEEEecCC
Q 029512 154 KEEVKDAWEELVSISYRNFWSCTCFLIYIFY 184 (192)
Q Consensus 154 ~~~~~~~~~~~~~l~~~~~~~~v~~vvD~s~ 184 (192)
+.+.+. +.....+|.+++|+|+..
T Consensus 156 -~f~~~~------~~g~~~aD~ailVVda~~ 179 (478)
T PLN03126 156 -DYVKNM------ITGAAQMDGAILVVSGAD 179 (478)
T ss_pred -HHHHHH------HHHHhhCCEEEEEEECCC
Confidence 222222 222345799999999864
No 258
>smart00176 RAN Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran is involved in the active transport of proteins through nuclear pores.
Probab=98.40 E-value=1.3e-06 Score=70.00 Aligned_cols=78 Identities=10% Similarity=0.058 Sum_probs=46.6
Q ss_pred EecCCCcHHHHHHHHhhccCceeecCCCCceeEEEEEe---eCCeEEEEECCCCCCCCChHHHHHHHHHHHhhhccCcee
Q 029512 98 AGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFK---LGTKLCLVDLPGYGFAYAKEEVKDAWEELVSISYRNFWS 174 (192)
Q Consensus 98 vG~~n~GKStlin~L~~~~~~~~~~~~~g~T~~~~~~~---~~~~~~lvDtPG~~~~~~~~~~~~~~~~~~~l~~~~~~~ 174 (192)
+|.+|||||||+++++..........+.|.+.....+. ....+.+|||||-. .....+..+ .+.++
T Consensus 1 vG~~~vGKTsLi~r~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~l~iwDt~G~e------~~~~l~~~~-----~~~ad 69 (200)
T smart00176 1 VGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIRFNVWDTAGQE------KFGGLRDGY-----YIQGQ 69 (200)
T ss_pred CCCCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEECCEEEEEEEEECCCch------hhhhhhHHH-----hcCCC
Confidence 59999999999999996521111222223332222222 24679999999942 122222222 34678
Q ss_pred EEEEEEecCCce
Q 029512 175 CTCFLIYIFYTN 186 (192)
Q Consensus 175 ~v~~vvD~s~~~ 186 (192)
++++|.|++.++
T Consensus 70 ~~ilV~D~t~~~ 81 (200)
T smart00176 70 CAIIMFDVTARV 81 (200)
T ss_pred EEEEEEECCChH
Confidence 889999987654
No 259
>TIGR03680 eif2g_arch translation initiation factor 2 subunit gamma. eIF-2 functions in the early steps of protein synthesis by forming a ternary complex with GTP and initiator tRNA.
Probab=98.40 E-value=7.7e-07 Score=78.58 Aligned_cols=83 Identities=22% Similarity=0.331 Sum_probs=50.6
Q ss_pred CCeEEEEecCCCcHHHHHHHHhhccCc-eeecCCCCceeEEEEE-----------------------e------eCCeEE
Q 029512 92 LPEIAFAGRSNVGKSSMLNALTRQWGV-VRTSDKPGLTQTINFF-----------------------K------LGTKLC 141 (192)
Q Consensus 92 ~~~i~lvG~~n~GKStlin~L~~~~~~-~~~~~~~g~T~~~~~~-----------------------~------~~~~~~ 141 (192)
..+|+++|..++|||||+++|++.... .......|.|.+..+. . .+..+.
T Consensus 4 ~~~i~iiG~~~~GKSTL~~~Lt~~~~d~~~~e~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 83 (406)
T TIGR03680 4 EVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELKRGISIRLGYADAEIYKCPECDGPECYTTEPVCPNCGSETELLRRVS 83 (406)
T ss_pred eEEEEEEccCCCCHHHHHHHHhCeecccCHhHHHcCceeEecccccccccccccCccccccccccccccccccccccEEE
Confidence 458999999999999999999874200 0000111333322110 0 135799
Q ss_pred EEECCCCCCCCChHHHHHHHHHHHhhhccCceeEEEEEEecCCc
Q 029512 142 LVDLPGYGFAYAKEEVKDAWEELVSISYRNFWSCTCFLIYIFYT 185 (192)
Q Consensus 142 lvDtPG~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~~vvD~s~~ 185 (192)
++||||. +..... + +.....+|.+++|+|++..
T Consensus 84 liDtPGh------~~f~~~---~--~~g~~~aD~aIlVVDa~~g 116 (406)
T TIGR03680 84 FVDAPGH------ETLMAT---M--LSGAALMDGALLVIAANEP 116 (406)
T ss_pred EEECCCH------HHHHHH---H--HHHHHHCCEEEEEEECCCC
Confidence 9999994 222222 2 2234467999999999863
No 260
>cd01885 EF2 EF2 (for archaea and eukarya). Translocation requires hydrolysis of a molecule of GTP and is mediated by EF-G in bacteria and by eEF2 in eukaryotes. The eukaryotic elongation factor eEF2 is a GTPase involved in the translocation of the peptidyl-tRNA from the A site to the P site on the ribosome. The 95-kDa protein is highly conserved, with 60% amino acid sequence identity between the human and yeast proteins. Two major mechanisms are known to regulate protein elongation and both involve eEF2. First, eEF2 can be modulated by reversible phosphorylation. Increased levels of phosphorylated eEF2 reduce elongation rates presumably because phosphorylated eEF2 fails to bind the ribosomes. Treatment of mammalian cells with agents that raise the cytoplasmic Ca2+ and cAMP levels reduce elongation rates by activating the kinase responsible for phosphorylating eEF2. In contrast, treatment of cells with insulin increases elongation rates by promoting eEF2 dephosphorylation. Seco
Probab=98.40 E-value=9.3e-07 Score=72.06 Aligned_cols=79 Identities=14% Similarity=0.169 Sum_probs=48.4
Q ss_pred eEEEEecCCCcHHHHHHHHhhccCceeecCC---------------CCceeEE---EEEee----------CCeEEEEEC
Q 029512 94 EIAFAGRSNVGKSSMLNALTRQWGVVRTSDK---------------PGLTQTI---NFFKL----------GTKLCLVDL 145 (192)
Q Consensus 94 ~i~lvG~~n~GKStlin~L~~~~~~~~~~~~---------------~g~T~~~---~~~~~----------~~~~~lvDt 145 (192)
+|+++|..++|||||+++|+...+. ..... -|.|.+. ...+. +..+.+|||
T Consensus 2 NvaiiGhvd~GKTTL~d~Ll~~~g~-i~~~~~g~~~~~D~~~~E~~RgiTi~~~~~~~~~~~~~~~~~~~~~~~i~iiDT 80 (222)
T cd01885 2 NICIIAHVDHGKTTLSDSLLASAGI-ISEKLAGKARYMDSREDEQERGITMKSSAISLYFEYEEEDKADGNEYLINLIDS 80 (222)
T ss_pred eEEEECCCCCCHHHHHHHHHHHcCC-CccccCCceeeccCCHHHHHhccccccceEEEEEecCcccccCCCceEEEEECC
Confidence 6899999999999999999865321 01111 1223221 11112 567899999
Q ss_pred CCCCCCCChHHHHHHHHHHHhhhccCceeEEEEEEecCC
Q 029512 146 PGYGFAYAKEEVKDAWEELVSISYRNFWSCTCFLIYIFY 184 (192)
Q Consensus 146 PG~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~~vvD~s~ 184 (192)
||...- ..... ...+.+|++++|+|+..
T Consensus 81 PG~~~f-----~~~~~------~~l~~aD~~ilVvD~~~ 108 (222)
T cd01885 81 PGHVDF-----SSEVT------AALRLCDGALVVVDAVE 108 (222)
T ss_pred CCcccc-----HHHHH------HHHHhcCeeEEEEECCC
Confidence 997531 11111 12245799999999865
No 261
>KOG0084 consensus GTPase Rab1/YPT1, small G protein superfamily, and related GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.39 E-value=1.6e-06 Score=68.83 Aligned_cols=83 Identities=23% Similarity=0.150 Sum_probs=54.2
Q ss_pred CCeEEEEecCCCcHHHHHHHHhhccCceeecCCCCceeEEE---EEeeCCeEEEEECCCCCCCCChHHHHHHHHHHHhhh
Q 029512 92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTIN---FFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVSIS 168 (192)
Q Consensus 92 ~~~i~lvG~~n~GKStlin~L~~~~~~~~~~~~~g~T~~~~---~~~~~~~~~lvDtPG~~~~~~~~~~~~~~~~~~~l~ 168 (192)
..+|+|+|.+|||||.|+-...+..-......+.|+--... ..-...++.+|||+|- +..+..+ ..
T Consensus 9 lFKiiliGds~VGKtCL~~Rf~~~~f~e~~~sTIGVDf~~rt~e~~gk~iKlQIWDTAGQ------ERFrtit-----~s 77 (205)
T KOG0084|consen 9 LFKIILIGDSGVGKTCLLLRFKDDTFTESYISTIGVDFKIRTVELDGKTIKLQIWDTAGQ------ERFRTIT-----SS 77 (205)
T ss_pred EEEEEEECCCCcChhhhhhhhccCCcchhhcceeeeEEEEEEeeecceEEEEEeeecccc------HHHhhhh-----Hh
Confidence 46999999999999999999987632222223333221111 1112457999999993 3333222 24
Q ss_pred ccCceeEEEEEEecCCc
Q 029512 169 YRNFWSCTCFLIYIFYT 185 (192)
Q Consensus 169 ~~~~~~~v~~vvD~s~~ 185 (192)
..+++++|++|.|.+..
T Consensus 78 yYR~ahGii~vyDiT~~ 94 (205)
T KOG0084|consen 78 YYRGAHGIIFVYDITKQ 94 (205)
T ss_pred hccCCCeEEEEEEcccH
Confidence 46789999999998764
No 262
>PRK05124 cysN sulfate adenylyltransferase subunit 1; Provisional
Probab=98.39 E-value=2.9e-06 Score=76.41 Aligned_cols=83 Identities=17% Similarity=0.209 Sum_probs=53.5
Q ss_pred CCCeEEEEecCCCcHHHHHHHHhhccCcee-------------ecC------------------CCCceeEEEEEe---e
Q 029512 91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVR-------------TSD------------------KPGLTQTINFFK---L 136 (192)
Q Consensus 91 ~~~~i~lvG~~n~GKStlin~L~~~~~~~~-------------~~~------------------~~g~T~~~~~~~---~ 136 (192)
...+|+++|..++|||||+++|+....... .+. .-|.|.+..+.. .
T Consensus 26 ~~~~i~iiGhvdaGKSTL~~~LL~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~a~~~D~~~eEr~rgiTid~~~~~~~~~ 105 (474)
T PRK05124 26 SLLRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLASLHNDSKRHGTQGEKLDLALLVDGLQAEREQGITIDVAYRYFSTE 105 (474)
T ss_pred CceEEEEECCCCCChHHHHHHHHHhcCCCcHHHHHHHHHHHHhcCCCccccchhhhccCChHHhhcCCCeEeeEEEeccC
Confidence 457999999999999999999986531100 000 123555554322 3
Q ss_pred CCeEEEEECCCCCCCCChHHHHHHHHHHHhhhccCceeEEEEEEecCC
Q 029512 137 GTKLCLVDLPGYGFAYAKEEVKDAWEELVSISYRNFWSCTCFLIYIFY 184 (192)
Q Consensus 137 ~~~~~lvDtPG~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~~vvD~s~ 184 (192)
+..+.++||||.. +..... ......+|++++|+|+..
T Consensus 106 ~~~i~~iDTPGh~-----~f~~~~------~~~l~~aD~allVVDa~~ 142 (474)
T PRK05124 106 KRKFIIADTPGHE-----QYTRNM------ATGASTCDLAILLIDARK 142 (474)
T ss_pred CcEEEEEECCCcH-----HHHHHH------HHHHhhCCEEEEEEECCC
Confidence 6789999999942 111222 222367899999999864
No 263
>PRK10218 GTP-binding protein; Provisional
Probab=98.38 E-value=2.5e-06 Score=78.88 Aligned_cols=82 Identities=20% Similarity=0.233 Sum_probs=54.2
Q ss_pred CCeEEEEecCCCcHHHHHHHHhhccCc-ee-------------ecCCCCceeEEEE---EeeCCeEEEEECCCCCCCCCh
Q 029512 92 LPEIAFAGRSNVGKSSMLNALTRQWGV-VR-------------TSDKPGLTQTINF---FKLGTKLCLVDLPGYGFAYAK 154 (192)
Q Consensus 92 ~~~i~lvG~~n~GKStlin~L~~~~~~-~~-------------~~~~~g~T~~~~~---~~~~~~~~lvDtPG~~~~~~~ 154 (192)
..+|+++|..++|||||+++|+..... .. .....|.|..... .+.+..+.+|||||..+-
T Consensus 5 iRnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~v~D~~~~E~erGiTi~~~~~~i~~~~~~inliDTPG~~df--- 81 (607)
T PRK10218 5 LRNIAIIAHVDHGKTTLVDKLLQQSGTFDSRAETQERVMDSNDLEKERGITILAKNTAIKWNDYRINIVDTPGHADF--- 81 (607)
T ss_pred ceEEEEECCCCCcHHHHHHHHHHhcCCcccccccceeeeccccccccCceEEEEEEEEEecCCEEEEEEECCCcchh---
Confidence 458999999999999999999974211 00 0112355554432 234788999999996531
Q ss_pred HHHHHHHHHHHhhhccCceeEEEEEEecCC
Q 029512 155 EEVKDAWEELVSISYRNFWSCTCFLIYIFY 184 (192)
Q Consensus 155 ~~~~~~~~~~~~l~~~~~~~~v~~vvD~s~ 184 (192)
...+... .+.+|++++|+|++.
T Consensus 82 ---~~~v~~~-----l~~aDg~ILVVDa~~ 103 (607)
T PRK10218 82 ---GGEVERV-----MSMVDSVLLVVDAFD 103 (607)
T ss_pred ---HHHHHHH-----HHhCCEEEEEEeccc
Confidence 1122222 256899999999875
No 264
>KOG0074 consensus GTP-binding ADP-ribosylation factor-like protein ARL3 [General function prediction only]
Probab=98.38 E-value=1.5e-06 Score=65.88 Aligned_cols=83 Identities=16% Similarity=0.193 Sum_probs=62.5
Q ss_pred CCCeEEEEecCCCcHHHHHHHHhhccCceeecCCCCceeEEEEEeeCCeEEEEECCCCCCCCChHHHHHHHHHHHhhhcc
Q 029512 91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVSISYR 170 (192)
Q Consensus 91 ~~~~i~lvG~~n~GKStlin~L~~~~~~~~~~~~~g~T~~~~~~~~~~~~~lvDtPG~~~~~~~~~~~~~~~~~~~l~~~ 170 (192)
...+|++.|-.|+||+|++..|.+. ......+..|.......+.....+.+||.-|- ..++-.|..+.+
T Consensus 16 rEirilllGldnAGKTT~LKqL~sE-D~~hltpT~GFn~k~v~~~g~f~LnvwDiGGq------r~IRpyWsNYye---- 84 (185)
T KOG0074|consen 16 REIRILLLGLDNAGKTTFLKQLKSE-DPRHLTPTNGFNTKKVEYDGTFHLNVWDIGGQ------RGIRPYWSNYYE---- 84 (185)
T ss_pred ceEEEEEEecCCCcchhHHHHHccC-ChhhccccCCcceEEEeecCcEEEEEEecCCc------cccchhhhhhhh----
Confidence 4679999999999999999999997 45555666665555455555688999999883 334456766643
Q ss_pred CceeEEEEEEecCCc
Q 029512 171 NFWSCTCFLIYIFYT 185 (192)
Q Consensus 171 ~~~~~v~~vvD~s~~ 185 (192)
++|.+++|+|+.+.
T Consensus 85 -nvd~lIyVIDS~D~ 98 (185)
T KOG0074|consen 85 -NVDGLIYVIDSTDE 98 (185)
T ss_pred -ccceEEEEEeCCch
Confidence 78999999997653
No 265
>cd04129 Rho2 Rho2 subfamily. Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors).
Probab=98.37 E-value=2.5e-06 Score=66.92 Aligned_cols=55 Identities=18% Similarity=0.099 Sum_probs=32.6
Q ss_pred eEEEEecCCCcHHHHHHHHhhccCceeecCCCCceeEEEEEe--eCCeEEEEECCCC
Q 029512 94 EIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFK--LGTKLCLVDLPGY 148 (192)
Q Consensus 94 ~i~lvG~~n~GKStlin~L~~~~~~~~~~~~~g~T~~~~~~~--~~~~~~lvDtPG~ 148 (192)
+++++|.+|+|||||++.+.............+......... ....+.++||||.
T Consensus 3 Ki~ivG~~g~GKStLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~ 59 (187)
T cd04129 3 KLVIVGDGACGKTSLLSVFTLGEFPEEYHPTVFENYVTDCRVDGKPVQLALWDTAGQ 59 (187)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCCcccCCcccceEEEEEEECCEEEEEEEEECCCC
Confidence 799999999999999999985421111111111000111111 1245789999995
No 266
>KOG0070 consensus GTP-binding ADP-ribosylation factor Arf1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.36 E-value=3.3e-07 Score=71.84 Aligned_cols=83 Identities=18% Similarity=0.252 Sum_probs=63.5
Q ss_pred CCCeEEEEecCCCcHHHHHHHHhhccCceeecCCCCceeEEEEEeeCCeEEEEECCCCCCCCChHHHHHHHHHHHhhhcc
Q 029512 91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVSISYR 170 (192)
Q Consensus 91 ~~~~i~lvG~~n~GKStlin~L~~~~~~~~~~~~~g~T~~~~~~~~~~~~~lvDtPG~~~~~~~~~~~~~~~~~~~l~~~ 170 (192)
...+|+++|-.|+||||+++.|--. +...+.++.|...+...+. +..+.+||.-|- +.++..|..+.
T Consensus 16 ~e~~IlmlGLD~AGKTTILykLk~~-E~vttvPTiGfnVE~v~yk-n~~f~vWDvGGq------~k~R~lW~~Y~----- 82 (181)
T KOG0070|consen 16 KEMRILMVGLDAAGKTTILYKLKLG-EIVTTVPTIGFNVETVEYK-NISFTVWDVGGQ------EKLRPLWKHYF----- 82 (181)
T ss_pred ceEEEEEEeccCCCceeeeEeeccC-CcccCCCccccceeEEEEc-ceEEEEEecCCC------cccccchhhhc-----
Confidence 3458999999999999999999876 5555667767666644443 889999999994 34455676653
Q ss_pred CceeEEEEEEecCCce
Q 029512 171 NFWSCTCFLIYIFYTN 186 (192)
Q Consensus 171 ~~~~~v~~vvD~s~~~ 186 (192)
.+.+++++|||+++.+
T Consensus 83 ~~t~~lIfVvDS~Dr~ 98 (181)
T KOG0070|consen 83 QNTQGLIFVVDSSDRE 98 (181)
T ss_pred cCCcEEEEEEeCCcHH
Confidence 4678999999998865
No 267
>TIGR02034 CysN sulfate adenylyltransferase, large subunit. Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules. With members of the Rhizobiaceae family, nodQ often appears as a fusion of cysN (large subunit of ATP sulfurase) and cysC (APS kinase).
Probab=98.36 E-value=1.6e-06 Score=76.51 Aligned_cols=80 Identities=15% Similarity=0.187 Sum_probs=51.2
Q ss_pred eEEEEecCCCcHHHHHHHHhhccCcee-------------ec------------------CCCCceeEEEEEe---eCCe
Q 029512 94 EIAFAGRSNVGKSSMLNALTRQWGVVR-------------TS------------------DKPGLTQTINFFK---LGTK 139 (192)
Q Consensus 94 ~i~lvG~~n~GKStlin~L~~~~~~~~-------------~~------------------~~~g~T~~~~~~~---~~~~ 139 (192)
+|+++|+.++|||||+++|+...+... .+ ..-|.|.+..... .+..
T Consensus 2 ~~~~vGhvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~~~D~~~eE~~rgiTid~~~~~~~~~~~~ 81 (406)
T TIGR02034 2 RFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLAALERDSKKHGTQGGEIDLALLVDGLQAEREQGITIDVAYRYFSTDKRK 81 (406)
T ss_pred eEEEECCCCCCchhhhHHHHHHcCCcCHHHHHHHHHHHHhhCCCcCceeeeeeccCChHHhcCCcCeEeeeEEEccCCeE
Confidence 689999999999999999975421100 00 0124556654333 3678
Q ss_pred EEEEECCCCCCCCChHHHHHHHHHHHhhhccCceeEEEEEEecCC
Q 029512 140 LCLVDLPGYGFAYAKEEVKDAWEELVSISYRNFWSCTCFLIYIFY 184 (192)
Q Consensus 140 ~~lvDtPG~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~~vvD~s~ 184 (192)
+.++||||.. +..... ......+|.+++|+|+..
T Consensus 82 ~~liDtPGh~-----~f~~~~------~~~~~~aD~allVVda~~ 115 (406)
T TIGR02034 82 FIVADTPGHE-----QYTRNM------ATGASTADLAVLLVDARK 115 (406)
T ss_pred EEEEeCCCHH-----HHHHHH------HHHHhhCCEEEEEEECCC
Confidence 9999999942 111122 123356899999999864
No 268
>TIGR01394 TypA_BipA GTP-binding protein TypA/BipA. This bacterial (and Arabidopsis) protein, termed TypA or BipA, a GTP-binding protein, is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways, but the precise function is unknown.
Probab=98.35 E-value=3.1e-06 Score=78.16 Aligned_cols=81 Identities=23% Similarity=0.268 Sum_probs=52.5
Q ss_pred CeEEEEecCCCcHHHHHHHHhhccCc----eeec----------CCCCceeEEE---EEeeCCeEEEEECCCCCCCCChH
Q 029512 93 PEIAFAGRSNVGKSSMLNALTRQWGV----VRTS----------DKPGLTQTIN---FFKLGTKLCLVDLPGYGFAYAKE 155 (192)
Q Consensus 93 ~~i~lvG~~n~GKStlin~L~~~~~~----~~~~----------~~~g~T~~~~---~~~~~~~~~lvDtPG~~~~~~~~ 155 (192)
.+|+++|..++|||||+++|+..... ..+. ..-|.|.... +.+.+..+.+|||||..+
T Consensus 2 RNIaIiGHvd~GKTTLv~~LL~~sg~~~~~~~v~~~~~D~~~~ErerGiTI~~~~~~v~~~~~kinlIDTPGh~D----- 76 (594)
T TIGR01394 2 RNIAIIAHVDHGKTTLVDALLKQSGTFRANEAVAERVMDSNDLERERGITILAKNTAIRYNGTKINIVDTPGHAD----- 76 (594)
T ss_pred cEEEEEcCCCCCHHHHHHHHHHhcCCCcccccceeecccCchHHHhCCccEEeeeEEEEECCEEEEEEECCCHHH-----
Confidence 37999999999999999999863210 0000 1224555432 334578999999999632
Q ss_pred HHHHHHHHHHhhhccCceeEEEEEEecCC
Q 029512 156 EVKDAWEELVSISYRNFWSCTCFLIYIFY 184 (192)
Q Consensus 156 ~~~~~~~~~~~l~~~~~~~~v~~vvD~s~ 184 (192)
....+.. ..+.+|.+++|+|++.
T Consensus 77 -F~~ev~~-----~l~~aD~alLVVDa~~ 99 (594)
T TIGR01394 77 -FGGEVER-----VLGMVDGVLLLVDASE 99 (594)
T ss_pred -HHHHHHH-----HHHhCCEEEEEEeCCC
Confidence 1112211 2246799999999975
No 269
>PRK04000 translation initiation factor IF-2 subunit gamma; Validated
Probab=98.33 E-value=1.9e-06 Score=76.23 Aligned_cols=84 Identities=20% Similarity=0.300 Sum_probs=53.3
Q ss_pred CCCeEEEEecCCCcHHHHHHHHhhccC-ceeecCCCCceeEEEEEe-----------------e------------CCeE
Q 029512 91 DLPEIAFAGRSNVGKSSMLNALTRQWG-VVRTSDKPGLTQTINFFK-----------------L------------GTKL 140 (192)
Q Consensus 91 ~~~~i~lvG~~n~GKStlin~L~~~~~-~~~~~~~~g~T~~~~~~~-----------------~------------~~~~ 140 (192)
+..+|+++|..++|||||+.+|++..- ........|.|.+..+.. . ...+
T Consensus 8 ~~~ni~v~Gh~d~GKSTL~~~L~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 87 (411)
T PRK04000 8 PEVNIGMVGHVDHGKTTLVQALTGVWTDRHSEELKRGITIRLGYADATIRKCPDCEEPEAYTTEPKCPNCGSETELLRRV 87 (411)
T ss_pred CcEEEEEEccCCCCHHHHHHHhhCeecccCHhHHhcCcEEEecccccccccccccCccccccccccccccccccccccEE
Confidence 456899999999999999999987420 001111234554432110 0 2578
Q ss_pred EEEECCCCCCCCChHHHHHHHHHHHhhhccCceeEEEEEEecCCc
Q 029512 141 CLVDLPGYGFAYAKEEVKDAWEELVSISYRNFWSCTCFLIYIFYT 185 (192)
Q Consensus 141 ~lvDtPG~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~~vvD~s~~ 185 (192)
.++||||.. .. ...+ +.....+|.+++|+|++++
T Consensus 88 ~liDtPG~~------~f---~~~~--~~~~~~~D~~llVVDa~~~ 121 (411)
T PRK04000 88 SFVDAPGHE------TL---MATM--LSGAALMDGAILVIAANEP 121 (411)
T ss_pred EEEECCCHH------HH---HHHH--HHHHhhCCEEEEEEECCCC
Confidence 999999931 11 1122 4445678999999999864
No 270
>TIGR00503 prfC peptide chain release factor 3. This translation releasing factor, RF-3 (prfC) was originally described as stop codon-independent, in contrast to peptide chain release factor 1 (RF-1, prfA) and RF-2 (prfB). RF-1 and RF-2 are closely related to each other, while RF-3 is similar to elongation factors EF-Tu and EF-G; RF-1 is active at UAA and UAG and RF-2 is active at UAA and UGA. More recently, RF-3 was shown to be active primarily at UGA stop codons in E. coli. All bacteria and organelles have RF-1. The Mycoplasmas and organelles, which translate UGA as Trp rather than as a stop codon, lack RF-2. RF-3, in contrast, seems to be rare among bacteria and is found so far only in Escherichia coli and some other gamma subdivision Proteobacteria, in Synechocystis PCC6803, and in Staphylococcus aureus.
Probab=98.30 E-value=5.6e-06 Score=75.49 Aligned_cols=82 Identities=18% Similarity=0.197 Sum_probs=51.2
Q ss_pred CCeEEEEecCCCcHHHHHHHHhhccC-c---eeec----------C------CCCceeEE---EEEeeCCeEEEEECCCC
Q 029512 92 LPEIAFAGRSNVGKSSMLNALTRQWG-V---VRTS----------D------KPGLTQTI---NFFKLGTKLCLVDLPGY 148 (192)
Q Consensus 92 ~~~i~lvG~~n~GKStlin~L~~~~~-~---~~~~----------~------~~g~T~~~---~~~~~~~~~~lvDtPG~ 148 (192)
..+++++|.+|+|||||+++|+.... . ..+. + .-|.|... .+.+.+..+.++||||.
T Consensus 11 ~RniaiiGh~~aGKTTL~e~Ll~~~g~i~~~g~v~~~g~~~~t~~D~~~~E~~rgisi~~~~~~~~~~~~~inliDTPG~ 90 (527)
T TIGR00503 11 RRTFAIISHPDAGKTTITEKVLLYGGAIQTAGAVKGRGSQRHAKSDWMEMEKQRGISITTSVMQFPYRDCLVNLLDTPGH 90 (527)
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHhCCCccccceeccccccccccCCCCHHHHhcCCcEEEEEEEEeeCCeEEEEEECCCh
Confidence 45999999999999999999964211 1 1111 0 01222222 23335788999999997
Q ss_pred CCCCChHHHHHHHHHHHhhhccCceeEEEEEEecCC
Q 029512 149 GFAYAKEEVKDAWEELVSISYRNFWSCTCFLIYIFY 184 (192)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~l~~~~~~~~v~~vvD~s~ 184 (192)
.+ .....+..+ ..+|.+++|+|++.
T Consensus 91 ~d-----f~~~~~~~l------~~aD~aIlVvDa~~ 115 (527)
T TIGR00503 91 ED-----FSEDTYRTL------TAVDNCLMVIDAAK 115 (527)
T ss_pred hh-----HHHHHHHHH------HhCCEEEEEEECCC
Confidence 32 111233222 35799999999875
No 271
>COG2229 Predicted GTPase [General function prediction only]
Probab=98.29 E-value=6.1e-06 Score=64.87 Aligned_cols=85 Identities=26% Similarity=0.257 Sum_probs=58.0
Q ss_pred CCCeEEEEecCCCcHHHHHHHHhhccCceee-----c-CCCC---ceeEEEEEe----eCCeEEEEECCCCCCCCChHHH
Q 029512 91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRT-----S-DKPG---LTQTINFFK----LGTKLCLVDLPGYGFAYAKEEV 157 (192)
Q Consensus 91 ~~~~i~lvG~~n~GKStlin~L~~~~~~~~~-----~-~~~g---~T~~~~~~~----~~~~~~lvDtPG~~~~~~~~~~ 157 (192)
...+|+++|+-++||+|++.++.... ...+ + ..-+ +|....+.. .+..+.|+|||| ++..
T Consensus 9 ~~~KIvv~G~~~agKtTfv~~~s~k~-~v~t~~~~~~~s~k~kr~tTva~D~g~~~~~~~~~v~LfgtPG------q~RF 81 (187)
T COG2229 9 IETKIVVIGPVGAGKTTFVRALSDKP-LVITEADASSVSGKGKRPTTVAMDFGSIELDEDTGVHLFGTPG------QERF 81 (187)
T ss_pred cceeEEEEcccccchhhHHHHhhccc-cceeeccccccccccccceeEeecccceEEcCcceEEEecCCC------cHHH
Confidence 35699999999999999999999763 1111 1 1122 555554433 357899999999 3333
Q ss_pred HHHHHHHHhhhccCceeEEEEEEecCCceE
Q 029512 158 KDAWEELVSISYRNFWSCTCFLIYIFYTNV 187 (192)
Q Consensus 158 ~~~~~~~~~l~~~~~~~~v~~vvD~s~~~~ 187 (192)
.-.|..+. +.+++.+++||++.|..
T Consensus 82 ~fm~~~l~-----~ga~gaivlVDss~~~~ 106 (187)
T COG2229 82 KFMWEILS-----RGAVGAIVLVDSSRPIT 106 (187)
T ss_pred HHHHHHHh-----CCcceEEEEEecCCCcc
Confidence 34444442 24789999999998864
No 272
>PRK05433 GTP-binding protein LepA; Provisional
Probab=98.29 E-value=4.6e-06 Score=77.14 Aligned_cols=84 Identities=15% Similarity=0.129 Sum_probs=52.3
Q ss_pred CCCeEEEEecCCCcHHHHHHHHhhccCce-------eecC------CCCceeEEE---EEe---e--CCeEEEEECCCCC
Q 029512 91 DLPEIAFAGRSNVGKSSMLNALTRQWGVV-------RTSD------KPGLTQTIN---FFK---L--GTKLCLVDLPGYG 149 (192)
Q Consensus 91 ~~~~i~lvG~~n~GKStlin~L~~~~~~~-------~~~~------~~g~T~~~~---~~~---~--~~~~~lvDtPG~~ 149 (192)
...+++++|..++|||||+++|+...... ...+ ..|.|.... ..+ . +..+.||||||..
T Consensus 6 ~iRNi~IiGhvd~GKTTL~~rLl~~tg~i~~~~~~~~~lD~~~~ErerGiTi~~~~v~~~~~~~dg~~~~lnLiDTPGh~ 85 (600)
T PRK05433 6 NIRNFSIIAHIDHGKSTLADRLIELTGTLSEREMKAQVLDSMDLERERGITIKAQAVRLNYKAKDGETYILNLIDTPGHV 85 (600)
T ss_pred cCCEEEEECCCCCCHHHHHHHHHHhcCCCcccccccccccCchHHhhcCCcccccEEEEEEEccCCCcEEEEEEECCCcH
Confidence 34589999999999999999998642110 0111 124444332 111 1 4678999999975
Q ss_pred CCCChHHHHHHHHHHHhhhccCceeEEEEEEecCCc
Q 029512 150 FAYAKEEVKDAWEELVSISYRNFWSCTCFLIYIFYT 185 (192)
Q Consensus 150 ~~~~~~~~~~~~~~~~~l~~~~~~~~v~~vvD~s~~ 185 (192)
+ ....+... .+.+|++++|+|++..
T Consensus 86 d------F~~~v~~s-----l~~aD~aILVVDas~g 110 (600)
T PRK05433 86 D------FSYEVSRS-----LAACEGALLVVDASQG 110 (600)
T ss_pred H------HHHHHHHH-----HHHCCEEEEEEECCCC
Confidence 3 11122222 2357999999999763
No 273
>KOG0080 consensus GTPase Rab18, small G protein superfamily [General function prediction only]
Probab=98.28 E-value=3.8e-06 Score=64.95 Aligned_cols=84 Identities=19% Similarity=0.192 Sum_probs=51.2
Q ss_pred CCeEEEEecCCCcHHHHHHHHhhccCceeecCC-CCceeEEEEEee---CCeEEEEECCCCCCCCChHHHHHHHHHHHhh
Q 029512 92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDK-PGLTQTINFFKL---GTKLCLVDLPGYGFAYAKEEVKDAWEELVSI 167 (192)
Q Consensus 92 ~~~i~lvG~~n~GKStlin~L~~~~~~~~~~~~-~g~T~~~~~~~~---~~~~~lvDtPG~~~~~~~~~~~~~~~~~~~l 167 (192)
..+|+++|.+|||||||+-..+... +..-.+. .|+--....... ..++.||||+|- +..+..-++
T Consensus 11 t~KiLlIGeSGVGKSSLllrFv~~~-fd~~~~~tIGvDFkvk~m~vdg~~~KlaiWDTAGq------ErFRtLTpS---- 79 (209)
T KOG0080|consen 11 TFKILLIGESGVGKSSLLLRFVSNT-FDDLHPTTIGVDFKVKVMQVDGKRLKLAIWDTAGQ------ERFRTLTPS---- 79 (209)
T ss_pred eEEEEEEccCCccHHHHHHHHHhcc-cCccCCceeeeeEEEEEEEEcCceEEEEEEeccch------HhhhccCHh----
Confidence 3699999999999999999888752 2211111 222222222222 457899999993 222222222
Q ss_pred hccCceeEEEEEEecCCceE
Q 029512 168 SYRNFWSCTCFLIYIFYTNV 187 (192)
Q Consensus 168 ~~~~~~~~v~~vvD~s~~~~ 187 (192)
..+.+.++|+|.|....+.
T Consensus 80 -yyRgaqGiIlVYDVT~Rdt 98 (209)
T KOG0080|consen 80 -YYRGAQGIILVYDVTSRDT 98 (209)
T ss_pred -HhccCceeEEEEEccchhh
Confidence 2345678888888866553
No 274
>KOG0094 consensus GTPase Rab6/YPT6/Ryh1, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.25 E-value=6.4e-06 Score=65.48 Aligned_cols=83 Identities=17% Similarity=0.138 Sum_probs=47.5
Q ss_pred CCeEEEEecCCCcHHHHHHHHhhccCceeecCCCCceeEE-EEEee--CCeEEEEECCCCCCCCChHHHHHHHHHHHhhh
Q 029512 92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTI-NFFKL--GTKLCLVDLPGYGFAYAKEEVKDAWEELVSIS 168 (192)
Q Consensus 92 ~~~i~lvG~~n~GKStlin~L~~~~~~~~~~~~~g~T~~~-~~~~~--~~~~~lvDtPG~~~~~~~~~~~~~~~~~~~l~ 168 (192)
..+++++|..+|||||||+..+-...-.....+.|..=.. .++.. ...++||||+| ++..+...+.+
T Consensus 22 ~~KlVflGdqsVGKTslItRf~yd~fd~~YqATIGiDFlskt~~l~d~~vrLQlWDTAG------QERFrslipsY---- 91 (221)
T KOG0094|consen 22 KYKLVFLGDQSVGKTSLITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAG------QERFRSLIPSY---- 91 (221)
T ss_pred EEEEEEEccCccchHHHHHHHHHhhhcccccceeeeEEEEEEEEEcCcEEEEEEEeccc------HHHHhhhhhhh----
Confidence 3689999999999999999998653111111222211111 12222 46789999999 33333333222
Q ss_pred ccCceeEEEEEEecCCc
Q 029512 169 YRNFWSCTCFLIYIFYT 185 (192)
Q Consensus 169 ~~~~~~~v~~vvD~s~~ 185 (192)
.++..++++|.|.++.
T Consensus 92 -~Rds~vaviVyDit~~ 107 (221)
T KOG0094|consen 92 -IRDSSVAVIVYDITDR 107 (221)
T ss_pred -ccCCeEEEEEEecccc
Confidence 3455556666665544
No 275
>PF04670 Gtr1_RagA: Gtr1/RagA G protein conserved region; InterPro: IPR006762 GTR1 was first identified in Saccharomyces cerevisiae (Baker's yeast) as a suppressor of a mutation in RCC1. RCC1 catalyzes guanine nucleotide exchange on Ran, a well characterised nuclear Ras-like small G protein that plays an essential role in the import and export of proteins and RNAs across the nuclear membrane through the nuclear pore complex. RCC1 is located inside the nucleus, bound to chromatin. The concentration of GTP within the cell is ~30 times higher than the concentration of GDP, thus resulting in the preferential production of the GTP form of Ran by RCC1 within the nucleus. Gtr1p is located within both the cytoplasm and the nucleus and has been reported to play a role in cell growth. Biochemical analysis revealed that Gtr1 is in fact a G protein of the Ras family. The RagA/B proteins are the human homologues of Gtr1 and Rag A and Gtr1p belong to the sixth subfamily of the Ras-like small GTPase superfamily []. ; GO: 0005525 GTP binding, 0005634 nucleus, 0005737 cytoplasm; PDB: 3R7W_B 2Q3F_B 3LLU_A.
Probab=98.25 E-value=3.2e-06 Score=69.35 Aligned_cols=84 Identities=15% Similarity=0.130 Sum_probs=47.7
Q ss_pred eEEEEecCCCcHHHHHHHHhhccCceeecCCCCceeEEEEEee----CCeEEEEECCCCCCCCChHHHHHHHHHHHhhhc
Q 029512 94 EIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKL----GTKLCLVDLPGYGFAYAKEEVKDAWEELVSISY 169 (192)
Q Consensus 94 ~i~lvG~~n~GKStlin~L~~~~~~~~~~~~~g~T~~~~~~~~----~~~~~lvDtPG~~~~~~~~~~~~~~~~~~~l~~ 169 (192)
+|+++|+.++||||..+.+++... +.-...-+.|.++..... ...+.+||+||-....... .......+
T Consensus 1 KiLLmG~~~SGKTSi~~vIF~~~~-p~dT~~L~~T~~ve~~~v~~~~~~~l~iwD~pGq~~~~~~~-~~~~~~~i----- 73 (232)
T PF04670_consen 1 KILLMGPRRSGKTSIRSVIFHKYS-PRDTLRLEPTIDVEKSHVRFLSFLPLNIWDCPGQDDFMENY-FNSQREEI----- 73 (232)
T ss_dssp EEEEEESTTSSHHHHHHHHHS----GGGGGG-----SEEEEEEECTTSCEEEEEEE-SSCSTTHTT-HTCCHHHH-----
T ss_pred CEEEEcCCCCChhhHHHHHHcCCC-chhccccCCcCCceEEEEecCCCcEEEEEEcCCcccccccc-ccccHHHH-----
Confidence 589999999999999999998631 222233356665543332 4589999999975321110 00001111
Q ss_pred cCceeEEEEEEecCC
Q 029512 170 RNFWSCTCFLIYIFY 184 (192)
Q Consensus 170 ~~~~~~v~~vvD~s~ 184 (192)
-+++.++++|+|+..
T Consensus 74 f~~v~~LIyV~D~qs 88 (232)
T PF04670_consen 74 FSNVGVLIYVFDAQS 88 (232)
T ss_dssp HCTESEEEEEEETT-
T ss_pred HhccCEEEEEEEccc
Confidence 146789999999973
No 276
>KOG0394 consensus Ras-related GTPase [General function prediction only]
Probab=98.24 E-value=3.6e-06 Score=66.29 Aligned_cols=58 Identities=24% Similarity=0.240 Sum_probs=42.6
Q ss_pred CCCCeEEEEecCCCcHHHHHHHHhhccC---ceeecCCCCceeEEEEEeeCCeEEEEECCC
Q 029512 90 PDLPEIAFAGRSNVGKSSMLNALTRQWG---VVRTSDKPGLTQTINFFKLGTKLCLVDLPG 147 (192)
Q Consensus 90 ~~~~~i~lvG~~n~GKStlin~L~~~~~---~~~~~~~~g~T~~~~~~~~~~~~~lvDtPG 147 (192)
....+|++.|.+|+|||||+|.+...+. +-.+-...+.|++...-..-..+++|||+|
T Consensus 7 ~~lLKViiLGDsGVGKtSLmn~yv~~kF~~qykaTIgadFltKev~Vd~~~vtlQiWDTAG 67 (210)
T KOG0394|consen 7 RTLLKVIILGDSGVGKTSLMNQYVNKKFSQQYKATIGADFLTKEVQVDDRSVTLQIWDTAG 67 (210)
T ss_pred ccceEEEEeCCCCccHHHHHHHHHHHHHHHHhccccchhheeeEEEEcCeEEEEEEEeccc
Confidence 4567999999999999999999997631 111122335788876654456789999999
No 277
>PRK13351 elongation factor G; Reviewed
Probab=98.23 E-value=5.9e-06 Score=77.52 Aligned_cols=84 Identities=14% Similarity=0.124 Sum_probs=53.0
Q ss_pred CCCeEEEEecCCCcHHHHHHHHhhccCc----eeec------C------CCCceeEE---EEEeeCCeEEEEECCCCCCC
Q 029512 91 DLPEIAFAGRSNVGKSSMLNALTRQWGV----VRTS------D------KPGLTQTI---NFFKLGTKLCLVDLPGYGFA 151 (192)
Q Consensus 91 ~~~~i~lvG~~n~GKStlin~L~~~~~~----~~~~------~------~~g~T~~~---~~~~~~~~~~lvDtPG~~~~ 151 (192)
...+|+++|..|+|||||+++|+...+. ..+. + ..+.|... .+.+.+..+.+|||||..+
T Consensus 7 ~irni~iiG~~~~GKTtL~~~ll~~~g~~~~~~~v~~~~~~~d~~~~e~~r~~ti~~~~~~~~~~~~~i~liDtPG~~d- 85 (687)
T PRK13351 7 QIRNIGILAHIDAGKTTLTERILFYTGKIHKMGEVEDGTTVTDWMPQEQERGITIESAATSCDWDNHRINLIDTPGHID- 85 (687)
T ss_pred cccEEEEECCCCCcchhHHHHHHHhcCCccccccccCCcccCCCCHHHHhcCCCcccceEEEEECCEEEEEEECCCcHH-
Confidence 4569999999999999999999864210 0111 0 12333332 2333478899999999743
Q ss_pred CChHHHHHHHHHHHhhhccCceeEEEEEEecCCc
Q 029512 152 YAKEEVKDAWEELVSISYRNFWSCTCFLIYIFYT 185 (192)
Q Consensus 152 ~~~~~~~~~~~~~~~l~~~~~~~~v~~vvD~s~~ 185 (192)
....+.. ..+.+|++++|+|++..
T Consensus 86 -----f~~~~~~-----~l~~aD~~ilVvd~~~~ 109 (687)
T PRK13351 86 -----FTGEVER-----SLRVLDGAVVVFDAVTG 109 (687)
T ss_pred -----HHHHHHH-----HHHhCCEEEEEEeCCCC
Confidence 1111211 22457999999998764
No 278
>PRK00741 prfC peptide chain release factor 3; Provisional
Probab=98.22 E-value=9.7e-06 Score=73.92 Aligned_cols=82 Identities=21% Similarity=0.212 Sum_probs=50.6
Q ss_pred CCeEEEEecCCCcHHHHHHHHhhccC----ceee----------cCC------CCceeE---EEEEeeCCeEEEEECCCC
Q 029512 92 LPEIAFAGRSNVGKSSMLNALTRQWG----VVRT----------SDK------PGLTQT---INFFKLGTKLCLVDLPGY 148 (192)
Q Consensus 92 ~~~i~lvG~~n~GKStlin~L~~~~~----~~~~----------~~~------~g~T~~---~~~~~~~~~~~lvDtPG~ 148 (192)
..+|+++|.+|+|||||+++|+.... ...+ ++. -|.|.. ..+.+.+..+.++||||.
T Consensus 10 ~Rni~IiGh~daGKTTL~e~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rgiSi~~~~~~~~~~~~~inliDTPG~ 89 (526)
T PRK00741 10 RRTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGRHATSDWMEMEKQRGISVTSSVMQFPYRDCLINLLDTPGH 89 (526)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhCCCccccceeeccccCccccCCCcHHHHhhCCceeeeeEEEEECCEEEEEEECCCc
Confidence 45999999999999999999974211 0111 100 012221 223345788999999996
Q ss_pred CCCCChHHHHHHHHHHHhhhccCceeEEEEEEecCC
Q 029512 149 GFAYAKEEVKDAWEELVSISYRNFWSCTCFLIYIFY 184 (192)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~l~~~~~~~~v~~vvD~s~ 184 (192)
.+ .....+..+ +.+|.+++|+|+..
T Consensus 90 ~d-----f~~~~~~~l------~~aD~aIlVvDa~~ 114 (526)
T PRK00741 90 ED-----FSEDTYRTL------TAVDSALMVIDAAK 114 (526)
T ss_pred hh-----hHHHHHHHH------HHCCEEEEEEecCC
Confidence 42 111222222 35799999999865
No 279
>KOG0090 consensus Signal recognition particle receptor, beta subunit (small G protein superfamily) [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.17 E-value=3.8e-06 Score=67.64 Aligned_cols=78 Identities=21% Similarity=0.281 Sum_probs=51.5
Q ss_pred CCeEEEEecCCCcHHHHHHHHhhccCceeecCCCCceeEEE--EEee-CCeEEEEECCCCCCCCChHHHHHHHHHHHhhh
Q 029512 92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTIN--FFKL-GTKLCLVDLPGYGFAYAKEEVKDAWEELVSIS 168 (192)
Q Consensus 92 ~~~i~lvG~~n~GKStlin~L~~~~~~~~~~~~~g~T~~~~--~~~~-~~~~~lvDtPG~~~~~~~~~~~~~~~~~~~l~ 168 (192)
.+.|.++|.+++|||+|+-.|.-... ....++.+++ .+.. ...+.|||.||- ..++..+.++ +.
T Consensus 38 ~~~Vll~Gl~dSGKT~LF~qL~~gs~-----~~TvtSiepn~a~~r~gs~~~~LVD~PGH------~rlR~kl~e~--~~ 104 (238)
T KOG0090|consen 38 QNAVLLVGLSDSGKTSLFTQLITGSH-----RGTVTSIEPNEATYRLGSENVTLVDLPGH------SRLRRKLLEY--LK 104 (238)
T ss_pred CCcEEEEecCCCCceeeeeehhcCCc-----cCeeeeeccceeeEeecCcceEEEeCCCc------HHHHHHHHHH--cc
Confidence 36899999999999999998886421 0111223332 2222 445799999993 3333333232 66
Q ss_pred ccCceeEEEEEEec
Q 029512 169 YRNFWSCTCFLIYI 182 (192)
Q Consensus 169 ~~~~~~~v~~vvD~ 182 (192)
+...+.++++|||+
T Consensus 105 ~~~~akaiVFVVDS 118 (238)
T KOG0090|consen 105 HNYSAKAIVFVVDS 118 (238)
T ss_pred ccccceeEEEEEec
Confidence 77889999999997
No 280
>KOG0092 consensus GTPase Rab5/YPT51 and related small G protein superfamily GTPases [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.16 E-value=2.7e-06 Score=67.29 Aligned_cols=57 Identities=23% Similarity=0.184 Sum_probs=41.2
Q ss_pred CCeEEEEecCCCcHHHHHHHHhhccCceeec---CCCCceeEEEEEeeCCeEEEEECCCC
Q 029512 92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTS---DKPGLTQTINFFKLGTKLCLVDLPGY 148 (192)
Q Consensus 92 ~~~i~lvG~~n~GKStlin~L~~~~~~~~~~---~~~g~T~~~~~~~~~~~~~lvDtPG~ 148 (192)
..+++|+|.+|||||||+-............ ...+.|+.........++.+|||+|-
T Consensus 5 ~~KvvLLG~~~VGKSSlV~Rfvk~~F~e~~e~TIGaaF~tktv~~~~~~ikfeIWDTAGQ 64 (200)
T KOG0092|consen 5 EFKVVLLGDSGVGKSSLVLRFVKDQFHENIEPTIGAAFLTKTVTVDDNTIKFEIWDTAGQ 64 (200)
T ss_pred eEEEEEECCCCCCchhhhhhhhhCccccccccccccEEEEEEEEeCCcEEEEEEEEcCCc
Confidence 4689999999999999999888763222222 23346666555555678899999995
No 281
>KOG0075 consensus GTP-binding ADP-ribosylation factor-like protein [General function prediction only]
Probab=98.15 E-value=2e-06 Score=65.54 Aligned_cols=80 Identities=21% Similarity=0.271 Sum_probs=55.6
Q ss_pred CeEEEEecCCCcHHHHHHHHhhccCceeecCCCCceeEEEEEe---eCCeEEEEECCCCCCCCChHHHHHHHHHHHhhhc
Q 029512 93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFK---LGTKLCLVDLPGYGFAYAKEEVKDAWEELVSISY 169 (192)
Q Consensus 93 ~~i~lvG~~n~GKStlin~L~~~~~~~~~~~~~g~T~~~~~~~---~~~~~~lvDtPG~~~~~~~~~~~~~~~~~~~l~~ 169 (192)
..+.++|--|+||||++|.++.........+ |+-.+... ....+.++|.||-. ..+..|..+-
T Consensus 21 mel~lvGLq~sGKtt~Vn~ia~g~~~edmip----tvGfnmrk~tkgnvtiklwD~gGq~------rfrsmWeryc---- 86 (186)
T KOG0075|consen 21 MELSLVGLQNSGKTTLVNVIARGQYLEDMIP----TVGFNMRKVTKGNVTIKLWDLGGQP------RFRSMWERYC---- 86 (186)
T ss_pred eeEEEEeeccCCcceEEEEEeeccchhhhcc----cccceeEEeccCceEEEEEecCCCc------cHHHHHHHHh----
Confidence 4789999999999999998886422222222 33222222 35679999999943 2345776664
Q ss_pred cCceeEEEEEEecCCceE
Q 029512 170 RNFWSCTCFLIYIFYTNV 187 (192)
Q Consensus 170 ~~~~~~v~~vvD~s~~~~ 187 (192)
+.++.++++||+++|+-
T Consensus 87 -R~v~aivY~VDaad~~k 103 (186)
T KOG0075|consen 87 -RGVSAIVYVVDAADPDK 103 (186)
T ss_pred -hcCcEEEEEeecCCccc
Confidence 46799999999999874
No 282
>PTZ00141 elongation factor 1- alpha; Provisional
Probab=98.11 E-value=1.3e-05 Score=71.65 Aligned_cols=83 Identities=18% Similarity=0.236 Sum_probs=54.6
Q ss_pred CCCeEEEEecCCCcHHHHHHHHhhccCc-e---------------e-------ec------CCCCceeEEEEEe---eCC
Q 029512 91 DLPEIAFAGRSNVGKSSMLNALTRQWGV-V---------------R-------TS------DKPGLTQTINFFK---LGT 138 (192)
Q Consensus 91 ~~~~i~lvG~~n~GKStlin~L~~~~~~-~---------------~-------~~------~~~g~T~~~~~~~---~~~ 138 (192)
...+|+++|..++|||||+.+|+..... . . .. ...|.|.+..... .+.
T Consensus 6 ~~~nv~i~Ghvd~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~~~s~~~a~~~D~~~~Er~rGiTid~~~~~~~~~~~ 85 (446)
T PTZ00141 6 THINLVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETPKY 85 (446)
T ss_pred ceEEEEEEecCCCCHHHHHHHHHHHcCCcChHHHHHHhhHHHhhCCcchhhhhhhcCChHHHhcCEeEEeeeEEEccCCe
Confidence 3468999999999999999999853210 0 0 01 1235676664333 367
Q ss_pred eEEEEECCCCCCCCChHHHHHHHHHHHhhhccCceeEEEEEEecCC
Q 029512 139 KLCLVDLPGYGFAYAKEEVKDAWEELVSISYRNFWSCTCFLIYIFY 184 (192)
Q Consensus 139 ~~~lvDtPG~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~~vvD~s~ 184 (192)
.+.|+||||.. +...+. +.....+|.+++|||+..
T Consensus 86 ~i~lIDtPGh~-----~f~~~~------~~g~~~aD~ailVVda~~ 120 (446)
T PTZ00141 86 YFTIIDAPGHR-----DFIKNM------ITGTSQADVAILVVASTA 120 (446)
T ss_pred EEEEEECCChH-----HHHHHH------HHhhhhcCEEEEEEEcCC
Confidence 89999999942 222222 223456899999999875
No 283
>PTZ00416 elongation factor 2; Provisional
Probab=98.10 E-value=2e-05 Score=75.50 Aligned_cols=81 Identities=15% Similarity=0.156 Sum_probs=51.1
Q ss_pred CCeEEEEecCCCcHHHHHHHHhhccCceeecCCCCc---------------eeEE---EEEee----------CCeEEEE
Q 029512 92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGL---------------TQTI---NFFKL----------GTKLCLV 143 (192)
Q Consensus 92 ~~~i~lvG~~n~GKStlin~L~~~~~~~~~~~~~g~---------------T~~~---~~~~~----------~~~~~lv 143 (192)
..+|+++|..++|||||+++|+...+. ......|. |.+. ...+. +..+.++
T Consensus 19 irni~iiGh~d~GKTTL~~~Ll~~~g~-i~~~~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~~~~~~i~li 97 (836)
T PTZ00416 19 IRNMSVIAHVDHGKSTLTDSLVCKAGI-ISSKNAGDARFTDTRADEQERGITIKSTGISLYYEHDLEDGDDKQPFLINLI 97 (836)
T ss_pred cCEEEEECCCCCCHHHHHHHHHHhcCC-cccccCCceeecccchhhHhhcceeeccceEEEeecccccccCCCceEEEEE
Confidence 459999999999999999999975321 11112222 2221 11111 4568999
Q ss_pred ECCCCCCCCChHHHHHHHHHHHhhhccCceeEEEEEEecCC
Q 029512 144 DLPGYGFAYAKEEVKDAWEELVSISYRNFWSCTCFLIYIFY 184 (192)
Q Consensus 144 DtPG~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~~vvD~s~ 184 (192)
||||..+ ...+. ....+.+|++++|+|+..
T Consensus 98 DtPG~~~-----f~~~~------~~al~~~D~ailVvda~~ 127 (836)
T PTZ00416 98 DSPGHVD-----FSSEV------TAALRVTDGALVVVDCVE 127 (836)
T ss_pred cCCCHHh-----HHHHH------HHHHhcCCeEEEEEECCC
Confidence 9999753 11112 223356899999999865
No 284
>cd04165 GTPBP1_like GTPBP1-like. Mammalian GTP binding protein 1 (GTPBP1), GTPBP2, and nematode homologs AGP-1 and CGP-1 are GTPases whose specific functions remain unknown. In mouse, GTPBP1 is expressed in macrophages, in smooth muscle cells of various tissues and in some neurons of the cerebral cortex; GTPBP2 tissue distribution appears to overlap that of GTPBP1. In human leukemia and macrophage cell lines, expression of both GTPBP1 and GTPBP2 is enhanced by interferon-gamma (IFN-gamma). The chromosomal location of both genes has been identified in humans, with GTPBP1 located in chromosome 22q12-13.1 and GTPBP2 located in chromosome 6p21-12. Human glioblastoma multiforme (GBM), a highly-malignant astrocytic glioma and the most common cancer in the central nervous system, has been linked to chromosomal deletions and a translocation on chromosome 6. The GBM translocation results in a fusion of GTPBP2 and PTPRZ1, a protein involved in oligodendrocyte differentiation, recovery, and
Probab=98.07 E-value=3.2e-05 Score=63.06 Aligned_cols=21 Identities=38% Similarity=0.684 Sum_probs=19.3
Q ss_pred eEEEEecCCCcHHHHHHHHhh
Q 029512 94 EIAFAGRSNVGKSSMLNALTR 114 (192)
Q Consensus 94 ~i~lvG~~n~GKStlin~L~~ 114 (192)
+|+++|..++|||||++.++.
T Consensus 1 ~v~~~G~~~~GKttl~~~~~~ 21 (224)
T cd04165 1 RVAVVGNVDAGKSTLLGVLTQ 21 (224)
T ss_pred CEEEECCCCCCHHHHHHHHHh
Confidence 478999999999999999995
No 285
>KOG1487 consensus GTP-binding protein DRG1 (ODN superfamily) [Signal transduction mechanisms]
Probab=98.06 E-value=4.6e-06 Score=69.21 Aligned_cols=86 Identities=24% Similarity=0.253 Sum_probs=62.9
Q ss_pred CCeEEEEecCCCcHHHHHHHHhhccCceeecCCCCceeEEE---EEeeCCeEEEEECCCCCC-CCCh-HHHHHHHHHHHh
Q 029512 92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTIN---FFKLGTKLCLVDLPGYGF-AYAK-EEVKDAWEELVS 166 (192)
Q Consensus 92 ~~~i~lvG~~n~GKStlin~L~~~~~~~~~~~~~g~T~~~~---~~~~~~~~~lvDtPG~~~-~~~~-~~~~~~~~~~~~ 166 (192)
..++.++|.|.+||||+++.|++.. ..+..+.|+|-... ..+.+.++.+.|.||+.. +... ..-.+.
T Consensus 59 ~a~vg~vgFPSvGksTl~~~l~g~~--s~vasyefttl~~vpG~~~y~gaKiqlldlpgiiegakdgkgrg~qv------ 130 (358)
T KOG1487|consen 59 DARVGFVGFPSVGKSTLLSKLTGTF--SEVAAYEFTTLTTVPGVIRYKGAKIQLLDLPGIIEGAKDGKGRGKQV------ 130 (358)
T ss_pred ceeeeEEecCccchhhhhhhhcCCC--CccccccceeEEEecceEeccccceeeecCcchhcccccCCCCccEE------
Confidence 3489999999999999999999974 67777777665432 224699999999999976 2211 111122
Q ss_pred hhccCceeEEEEEEecCCc
Q 029512 167 ISYRNFWSCTCFLIYIFYT 185 (192)
Q Consensus 167 l~~~~~~~~v~~vvD~s~~ 185 (192)
+.-++.+.++++++|+-.|
T Consensus 131 iavartcnli~~vld~~kp 149 (358)
T KOG1487|consen 131 IAVARTCNLIFIVLDVLKP 149 (358)
T ss_pred EEEeecccEEEEEeeccCc
Confidence 5567788999999998655
No 286
>PLN00116 translation elongation factor EF-2 subunit; Provisional
Probab=98.05 E-value=3.1e-05 Score=74.31 Aligned_cols=82 Identities=13% Similarity=0.188 Sum_probs=50.8
Q ss_pred CCCeEEEEecCCCcHHHHHHHHhhccCceeecCCCC---------------ceeEE---EEEe----------------e
Q 029512 91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPG---------------LTQTI---NFFK----------------L 136 (192)
Q Consensus 91 ~~~~i~lvG~~n~GKStlin~L~~~~~~~~~~~~~g---------------~T~~~---~~~~----------------~ 136 (192)
...+|+++|+.++|||||+++|+...+. ......| .|... ...+ .
T Consensus 18 ~Irni~iiGhvd~GKTTL~~~Ll~~~g~-i~~~~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (843)
T PLN00116 18 NIRNMSVIAHVDHGKSTLTDSLVAAAGI-IAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDESLKDFKGERDGN 96 (843)
T ss_pred CccEEEEEcCCCCCHHHHHHHHHHhcCC-cccccCCceeeccCcHHHHHhCCceecceeEEEeecccccccccccccCCC
Confidence 4569999999999999999999865321 1111122 22221 1111 1
Q ss_pred CCeEEEEECCCCCCCCChHHHHHHHHHHHhhhccCceeEEEEEEecCC
Q 029512 137 GTKLCLVDLPGYGFAYAKEEVKDAWEELVSISYRNFWSCTCFLIYIFY 184 (192)
Q Consensus 137 ~~~~~lvDtPG~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~~vvD~s~ 184 (192)
+..+.++||||..+ ...+. ....+.+|..++|||+..
T Consensus 97 ~~~inliDtPGh~d-----F~~e~------~~al~~~D~ailVvda~~ 133 (843)
T PLN00116 97 EYLINLIDSPGHVD-----FSSEV------TAALRITDGALVVVDCIE 133 (843)
T ss_pred ceEEEEECCCCHHH-----HHHHH------HHHHhhcCEEEEEEECCC
Confidence 45689999999632 22222 222355799999999864
No 287
>TIGR00490 aEF-2 translation elongation factor aEF-2. This model represents archaeal elongation factor 2, a protein more similar to eukaryotic EF-2 than to bacterial EF-G, both in sequence similarity and in sharing with eukaryotes the property of having a diphthamide (modified His) residue at a conserved position. The diphthamide can be ADP-ribosylated by diphtheria toxin in the presence of NAD.
Probab=98.04 E-value=6.5e-06 Score=77.66 Aligned_cols=82 Identities=16% Similarity=0.120 Sum_probs=51.0
Q ss_pred CCeEEEEecCCCcHHHHHHHHhhccCc--------eeecC------CCCceeEEE-------EEeeCCeEEEEECCCCCC
Q 029512 92 LPEIAFAGRSNVGKSSMLNALTRQWGV--------VRTSD------KPGLTQTIN-------FFKLGTKLCLVDLPGYGF 150 (192)
Q Consensus 92 ~~~i~lvG~~n~GKStlin~L~~~~~~--------~~~~~------~~g~T~~~~-------~~~~~~~~~lvDtPG~~~ 150 (192)
..+|+++|..++|||||+++|+...+. ....+ ..|.|.+.. ....+..+.++||||..+
T Consensus 19 irnI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~~~~~~~d~~~~e~~rg~Ti~~~~~~~~~~~~~~~~~i~liDTPG~~~ 98 (720)
T TIGR00490 19 IRNIGIVAHIDHGKTTLSDNLLAGAGMISEELAGQQLYLDFDEQEQERGITINAANVSMVHEYEGNEYLINLIDTPGHVD 98 (720)
T ss_pred ccEEEEEEeCCCCHHHHHHHHHHHcCCCchhcCCceeecCCCHHHHhhcchhhcccceeEEeecCCceEEEEEeCCCccc
Confidence 469999999999999999999753110 00011 123443322 112367899999999864
Q ss_pred CCChHHHHHHHHHHHhhhccCceeEEEEEEecCC
Q 029512 151 AYAKEEVKDAWEELVSISYRNFWSCTCFLIYIFY 184 (192)
Q Consensus 151 ~~~~~~~~~~~~~~~~l~~~~~~~~v~~vvD~s~ 184 (192)
-. . .... ..+.+|++++|+|+..
T Consensus 99 f~--~---~~~~------al~~aD~~llVvda~~ 121 (720)
T TIGR00490 99 FG--G---DVTR------AMRAVDGAIVVVCAVE 121 (720)
T ss_pred cH--H---HHHH------HHHhcCEEEEEEecCC
Confidence 11 1 1111 2245799999999864
No 288
>cd01873 RhoBTB RhoBTB subfamily. Members of the RhoBTB subfamily of Rho GTPases are present in vertebrates, Drosophila, and Dictyostelium. RhoBTB proteins are characterized by a modular organization, consisting of a GTPase domain, a proline rich region, a tandem of two BTB (Broad-Complex, Tramtrack, and Bric a brac) domains, and a C-terminal region of unknown function. RhoBTB proteins may act as docking points for multiple components participating in signal transduction cascades. RhoBTB genes appeared upregulated in some cancer cell lines, suggesting a participation of RhoBTB proteins in the pathogenesis of particular tumors. Note that the Dictyostelium RacA GTPase domain is more closely related to Rac proteins than to RhoBTB proteins, where RacA actually belongs. Thus, the Dictyostelium RacA is not included here. Most Rho proteins contain a lipid modification site at the C-terminus; however, RhoBTB is one of few Rho subfamilies that lack this feature.
Probab=98.02 E-value=2e-05 Score=62.79 Aligned_cols=81 Identities=12% Similarity=-0.049 Sum_probs=45.0
Q ss_pred CeEEEEecCCCcHHHHHH-HHhhccCc--eeecCCCCcee--E-EE------------EEeeCCeEEEEECCCCCCCCCh
Q 029512 93 PEIAFAGRSNVGKSSMLN-ALTRQWGV--VRTSDKPGLTQ--T-IN------------FFKLGTKLCLVDLPGYGFAYAK 154 (192)
Q Consensus 93 ~~i~lvG~~n~GKStlin-~L~~~~~~--~~~~~~~g~T~--~-~~------------~~~~~~~~~lvDtPG~~~~~~~ 154 (192)
.+|+++|.+|||||||++ .+.+.... ........+.- + .. .......+.+|||+|-...
T Consensus 3 ~Kiv~vG~~~vGKTsLi~~~~~~~~~~~~~f~~~~~pTi~~~~~~~~~~~~~~~~~~~~~~~~v~l~iwDTaG~~~~--- 79 (195)
T cd01873 3 IKCVVVGDNAVGKTRLICARACNKTLTQYQLLATHVPTVWAIDQYRVCQEVLERSRDVVDGVSVSLRLWDTFGDHDK--- 79 (195)
T ss_pred eEEEEECCCCcCHHHHHHHHHhCCCcccccCccccCCceecccceeEEeeeccccceeeCCEEEEEEEEeCCCChhh---
Confidence 589999999999999996 55443100 00111111110 0 00 0011357899999995320
Q ss_pred HHHHHHHHHHHhhhccCceeEEEEEEecCCce
Q 029512 155 EEVKDAWEELVSISYRNFWSCTCFLIYIFYTN 186 (192)
Q Consensus 155 ~~~~~~~~~~~~l~~~~~~~~v~~vvD~s~~~ 186 (192)
.. -...+.+|++++|.|.++++
T Consensus 80 --~~--------~~~~~~ad~iilv~d~t~~~ 101 (195)
T cd01873 80 --DR--------RFAYGRSDVVLLCFSIASPN 101 (195)
T ss_pred --hh--------cccCCCCCEEEEEEECCChh
Confidence 00 01235678888888876654
No 289
>TIGR03348 VI_IcmF type VI secretion protein IcmF. Members of this protein family are IcmF homologs and tend to be associated with type VI secretion systems.
Probab=98.01 E-value=2.9e-05 Score=76.90 Aligned_cols=119 Identities=17% Similarity=0.214 Sum_probs=72.5
Q ss_pred HHHHHHHHhhhhhHHHHHhcccccCCCCCCCCeEEEEecCCCcHHHHHHHHhhcc-Ccee---ec--CCCCceeEEEEEe
Q 029512 62 ERERIEENIFRNKLEFFAAAKVSSSFPAPDLPEIAFAGRSNVGKSSMLNALTRQW-GVVR---TS--DKPGLTQTINFFK 135 (192)
Q Consensus 62 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~lvG~~n~GKStlin~L~~~~-~~~~---~~--~~~g~T~~~~~~~ 135 (192)
+.+.+..+ ++..+..++..+...+...-..|..+++|++|+||||+|+.. |.. .... .. ...+-|+.+.+..
T Consensus 82 ~~~~l~~~-~~~a~~~Lk~~~~~~~~~lY~LPWYlviG~~gsGKtt~l~~s-gl~~pl~~~~~~~~~~~~~~t~~c~wwf 159 (1169)
T TIGR03348 82 EIRELRAR-FNEALALLKRSRLGGRRYLYDLPWYLVIGPPGSGKTTLLQNS-GLKFPLAERLGAAALRGVGGTRNCDWWF 159 (1169)
T ss_pred HHHHHHHH-HHHHHHHHhhccccCchhhhcCCCEEEECCCCCchhHHHHhC-CCCCcCchhhccccccCCCCCcccceEe
Confidence 33344443 344444454443222222346789999999999999999977 331 1111 01 1224566666654
Q ss_pred eCCeEEEEECCCCCCC-C-ChHHHHHHHHHHHh----hhccCceeEEEEEEecC
Q 029512 136 LGTKLCLVDLPGYGFA-Y-AKEEVKDAWEELVS----ISYRNFWSCTCFLIYIF 183 (192)
Q Consensus 136 ~~~~~~lvDtPG~~~~-~-~~~~~~~~~~~~~~----l~~~~~~~~v~~vvD~s 183 (192)
...-+++||+|.... . ..+.....|..++. ...++.+++|+++||..
T Consensus 160 -~~~avliDtaG~y~~~~~~~~~~~~~W~~fL~~L~k~R~r~plnGvil~vs~~ 212 (1169)
T TIGR03348 160 -TDEAVLIDTAGRYTTQDSDPEEDAAAWLGFLGLLRKHRRRQPLNGVVVTVSLA 212 (1169)
T ss_pred -cCCEEEEcCCCccccCCCcccccHHHHHHHHHHHHHhCCCCCCCeEEEEEEHH
Confidence 455679999995542 2 22334567888887 34458899999999975
No 290
>PRK09866 hypothetical protein; Provisional
Probab=98.00 E-value=2.7e-05 Score=72.05 Aligned_cols=56 Identities=16% Similarity=0.157 Sum_probs=39.2
Q ss_pred CeEEEEecCCCcHHHHHHHHhhccCceeecCCCCceeEEEEEe----eCCeEEEEECCCCCC
Q 029512 93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFK----LGTKLCLVDLPGYGF 150 (192)
Q Consensus 93 ~~i~lvG~~n~GKStlin~L~~~~~~~~~~~~~g~T~~~~~~~----~~~~~~lvDtPG~~~ 150 (192)
+.++++|++|+|||||+|+|+|. .+..+++.+.++. +.... ........||-||..
T Consensus 70 ~~valvG~sgaGKSTLiNaL~G~-~Vlpt~~~~~t~l-pT~i~~~pg~re~~L~~dtvgfI~ 129 (741)
T PRK09866 70 MVLAIVGTMKAGKSTTINAIVGT-EVLPNRNRPMTAL-PTLIRHTPGQKEPVLHFSHVAPID 129 (741)
T ss_pred eEEEEECCCCCCHHHHHHHHhCC-ccccCCCcccccc-cEEEEecCCcCceeeecCCccchH
Confidence 79999999999999999999998 5555555555444 22222 133455667777664
No 291
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=97.98 E-value=9e-05 Score=65.89 Aligned_cols=88 Identities=17% Similarity=0.164 Sum_probs=50.9
Q ss_pred CCeEEEEecCCCcHHHHHHHHhhcc-----CceeecCCCC-----------cee-EEEEEe-------------------
Q 029512 92 LPEIAFAGRSNVGKSSMLNALTRQW-----GVVRTSDKPG-----------LTQ-TINFFK------------------- 135 (192)
Q Consensus 92 ~~~i~lvG~~n~GKStlin~L~~~~-----~~~~~~~~~g-----------~T~-~~~~~~------------------- 135 (192)
...|+++|.+|+||||++..|.... .+..++.-++ ..+ ...++.
T Consensus 100 ~~vi~lvG~~GvGKTTtaaKLA~~l~~~G~kV~lV~~D~~R~aA~eQLk~~a~~~~vp~~~~~~~~dp~~i~~~~l~~~~ 179 (429)
T TIGR01425 100 QNVIMFVGLQGSGKTTTCTKLAYYYQRKGFKPCLVCADTFRAGAFDQLKQNATKARIPFYGSYTESDPVKIASEGVEKFK 179 (429)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEcCcccchhHHHHHHHHhhccCCeEEeecCCCCHHHHHHHHHHHHH
Confidence 3578999999999999999998311 2233322111 000 011111
Q ss_pred -eCCeEEEEECCCCCCCCChHHHHHHHHHHHhhhccCceeEEEEEEecCC
Q 029512 136 -LGTKLCLVDLPGYGFAYAKEEVKDAWEELVSISYRNFWSCTCFLIYIFY 184 (192)
Q Consensus 136 -~~~~~~lvDtPG~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~~vvD~s~ 184 (192)
.+..+.|+||||... ..+.+. .++..+....+.+.+++|+|+..
T Consensus 180 ~~~~DvViIDTaGr~~--~d~~lm---~El~~i~~~~~p~e~lLVlda~~ 224 (429)
T TIGR01425 180 KENFDIIIVDTSGRHK--QEDSLF---EEMLQVAEAIQPDNIIFVMDGSI 224 (429)
T ss_pred hCCCCEEEEECCCCCc--chHHHH---HHHHHHhhhcCCcEEEEEecccc
Confidence 146899999999543 223233 33333333445678999999853
No 292
>KOG0095 consensus GTPase Rab30, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.97 E-value=5e-05 Score=58.18 Aligned_cols=77 Identities=22% Similarity=0.314 Sum_probs=49.4
Q ss_pred CCeEEEEecCCCcHHHHHHHHhhccCceeecCCCCceeEEEEE----e---eCCeEEEEECCCCCCCCChHHHHHHHHHH
Q 029512 92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFF----K---LGTKLCLVDLPGYGFAYAKEEVKDAWEEL 164 (192)
Q Consensus 92 ~~~i~lvG~~n~GKStlin~L~~~~~~~~~~~~~g~T~~~~~~----~---~~~~~~lvDtPG~~~~~~~~~~~~~~~~~ 164 (192)
..+|++||+.|+||+.|+...+... ..+..|.|.-+.+. . +..++.+|||+| ++..+...++
T Consensus 7 lfkivlvgnagvgktclvrrftqgl----fppgqgatigvdfmiktvev~gekiklqiwdtag------qerfrsitqs- 75 (213)
T KOG0095|consen 7 LFKIVLVGNAGVGKTCLVRRFTQGL----FPPGQGATIGVDFMIKTVEVNGEKIKLQIWDTAG------QERFRSITQS- 75 (213)
T ss_pred eEEEEEEccCCcCcchhhhhhhccC----CCCCCCceeeeeEEEEEEEECCeEEEEEEeeccc------hHHHHHHHHH-
Confidence 4689999999999999999998752 22333444433222 1 346799999999 3332222222
Q ss_pred HhhhccCceeEEEEEEecC
Q 029512 165 VSISYRNFWSCTCFLIYIF 183 (192)
Q Consensus 165 ~~l~~~~~~~~v~~vvD~s 183 (192)
..+.+..++++.|.+
T Consensus 76 ----yyrsahalilvydis 90 (213)
T KOG0095|consen 76 ----YYRSAHALILVYDIS 90 (213)
T ss_pred ----HhhhcceEEEEEecc
Confidence 234567778888765
No 293
>KOG0098 consensus GTPase Rab2, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.94 E-value=6.4e-05 Score=59.48 Aligned_cols=56 Identities=25% Similarity=0.270 Sum_probs=37.4
Q ss_pred CCeEEEEecCCCcHHHHHHHHhhccCceeecCC-CCceeEEEEEe---eCCeEEEEECCCC
Q 029512 92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDK-PGLTQTINFFK---LGTKLCLVDLPGY 148 (192)
Q Consensus 92 ~~~i~lvG~~n~GKStlin~L~~~~~~~~~~~~-~g~T~~~~~~~---~~~~~~lvDtPG~ 148 (192)
..+++++|.+|||||.|+-..+.. .+..+.+. .|+---...+. -..++.+|||+|-
T Consensus 6 ~fKyIiiGd~gVGKSclllrf~~k-rF~~~hd~TiGvefg~r~~~id~k~IKlqiwDtaGq 65 (216)
T KOG0098|consen 6 LFKYIIIGDTGVGKSCLLLRFTDK-RFQPVHDLTIGVEFGARMVTIDGKQIKLQIWDTAGQ 65 (216)
T ss_pred eEEEEEECCCCccHHHHHHHHhcc-CccccccceeeeeeceeEEEEcCceEEEEEEecCCc
Confidence 468999999999999999999987 33443331 12111111222 2467999999993
No 294
>COG4917 EutP Ethanolamine utilization protein [Amino acid transport and metabolism]
Probab=97.89 E-value=2.5e-05 Score=58.07 Aligned_cols=76 Identities=21% Similarity=0.212 Sum_probs=48.3
Q ss_pred CeEEEEecCCCcHHHHHHHHhhccCceeecCCCCceeEEEEEeeCCeEEEEECCCCCCCCChHHHHHHHHHHHhhhccCc
Q 029512 93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVSISYRNF 172 (192)
Q Consensus 93 ~~i~lvG~~n~GKStlin~L~~~~~~~~~~~~~g~T~~~~~~~~~~~~~lvDtPG~~~~~~~~~~~~~~~~~~~l~~~~~ 172 (192)
.++++||..|+||+||+|+|.|..- ..-.|+.+.+... ..+||||-... .. .....+ +.....
T Consensus 2 Kri~~vG~~gcGKTtL~q~L~G~~~------lykKTQAve~~d~----~~IDTPGEy~~--~~---~~Y~aL--~tt~~d 64 (148)
T COG4917 2 KRIAFVGQVGCGKTTLFQSLYGNDT------LYKKTQAVEFNDK----GDIDTPGEYFE--HP---RWYHAL--ITTLQD 64 (148)
T ss_pred ceeEEecccccCchhHHHHhhcchh------hhcccceeeccCc----cccCCchhhhh--hh---HHHHHH--HHHhhc
Confidence 4899999999999999999999741 1124555544322 24999994431 11 112223 223456
Q ss_pred eeEEEEEEecCCc
Q 029512 173 WSCTCFLIYIFYT 185 (192)
Q Consensus 173 ~~~v~~vvD~s~~ 185 (192)
+|.+++|-.+.+|
T Consensus 65 advi~~v~~and~ 77 (148)
T COG4917 65 ADVIIYVHAANDP 77 (148)
T ss_pred cceeeeeecccCc
Confidence 7888888777666
No 295
>KOG0078 consensus GTP-binding protein SEC4, small G protein superfamily, and related Ras family GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.86 E-value=6.6e-05 Score=60.17 Aligned_cols=80 Identities=19% Similarity=0.104 Sum_probs=50.4
Q ss_pred CCCeEEEEecCCCcHHHHHHHHhhccCceeecCCCCceeEEE----EEe---eCCeEEEEECCCCCCCCChHHHHHHHHH
Q 029512 91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTIN----FFK---LGTKLCLVDLPGYGFAYAKEEVKDAWEE 163 (192)
Q Consensus 91 ~~~~i~lvG~~n~GKStlin~L~~~~~~~~~~~~~g~T~~~~----~~~---~~~~~~lvDtPG~~~~~~~~~~~~~~~~ 163 (192)
...+|+++|.+|||||+++-...... ..... ..|.-+. ... ....+++|||.| ++.....+.+
T Consensus 11 ~~~kvlliGDs~vGKt~~l~rf~d~~---f~~~~-~sTiGIDFk~kti~l~g~~i~lQiWDtaG------Qerf~ti~~s 80 (207)
T KOG0078|consen 11 YLFKLLLIGDSGVGKTCLLLRFSDDS---FNTSF-ISTIGIDFKIKTIELDGKKIKLQIWDTAG------QERFRTITTA 80 (207)
T ss_pred eEEEEEEECCCCCchhHhhhhhhhcc---CcCCc-cceEEEEEEEEEEEeCCeEEEEEEEEccc------chhHHHHHHH
Confidence 45799999999999999999888652 11111 1222111 111 245789999999 3333334433
Q ss_pred HHhhhccCceeEEEEEEecCCc
Q 029512 164 LVSISYRNFWSCTCFLIYIFYT 185 (192)
Q Consensus 164 ~~~l~~~~~~~~v~~vvD~s~~ 185 (192)
+ .+.+.++++|+|.+..
T Consensus 81 Y-----yrgA~gi~LvyDitne 97 (207)
T KOG0078|consen 81 Y-----YRGAMGILLVYDITNE 97 (207)
T ss_pred H-----HhhcCeeEEEEEccch
Confidence 3 3457888888887653
No 296
>PRK07560 elongation factor EF-2; Reviewed
Probab=97.85 E-value=8e-05 Score=70.46 Aligned_cols=83 Identities=16% Similarity=0.130 Sum_probs=50.2
Q ss_pred CCCeEEEEecCCCcHHHHHHHHhhccCcee--e------cCC------CCceeEEE---EEe----eCCeEEEEECCCCC
Q 029512 91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVR--T------SDK------PGLTQTIN---FFK----LGTKLCLVDLPGYG 149 (192)
Q Consensus 91 ~~~~i~lvG~~n~GKStlin~L~~~~~~~~--~------~~~------~g~T~~~~---~~~----~~~~~~lvDtPG~~ 149 (192)
...+|+++|+.++|||||+.+|+...+... . .+. -|.|.+.. +.+ .+..+.++||||..
T Consensus 19 ~iRni~iigh~d~GKTTL~e~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~i~liDtPG~~ 98 (731)
T PRK07560 19 QIRNIGIIAHIDHGKTTLSDNLLAGAGMISEELAGEQLALDFDEEEQARGITIKAANVSMVHEYEGKEYLINLIDTPGHV 98 (731)
T ss_pred cccEEEEEEeCCCCHHHHHHHHHHHcCCcchhhcCcceecCccHHHHHhhhhhhccceEEEEEecCCcEEEEEEcCCCcc
Confidence 355899999999999999999986432110 0 000 12232221 111 25678999999976
Q ss_pred CCCChHHHHHHHHHHHhhhccCceeEEEEEEecCC
Q 029512 150 FAYAKEEVKDAWEELVSISYRNFWSCTCFLIYIFY 184 (192)
Q Consensus 150 ~~~~~~~~~~~~~~~~~l~~~~~~~~v~~vvD~s~ 184 (192)
+- ..... ...+.+|++++|+|+..
T Consensus 99 df-----~~~~~------~~l~~~D~avlVvda~~ 122 (731)
T PRK07560 99 DF-----GGDVT------RAMRAVDGAIVVVDAVE 122 (731)
T ss_pred Ch-----HHHHH------HHHHhcCEEEEEEECCC
Confidence 51 11111 12245799999999754
No 297
>PRK12740 elongation factor G; Reviewed
Probab=97.79 E-value=9.2e-05 Score=69.30 Aligned_cols=77 Identities=21% Similarity=0.210 Sum_probs=47.3
Q ss_pred EecCCCcHHHHHHHHhhccCc----eee------cC------CCCceeEE---EEEeeCCeEEEEECCCCCCCCChHHHH
Q 029512 98 AGRSNVGKSSMLNALTRQWGV----VRT------SD------KPGLTQTI---NFFKLGTKLCLVDLPGYGFAYAKEEVK 158 (192)
Q Consensus 98 vG~~n~GKStlin~L~~~~~~----~~~------~~------~~g~T~~~---~~~~~~~~~~lvDtPG~~~~~~~~~~~ 158 (192)
+|+.|+|||||+++|+..... ..+ .+ ..|.|... .+...+..+.+|||||... ..
T Consensus 1 ig~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~i~liDtPG~~~------~~ 74 (668)
T PRK12740 1 VGHSGAGKTTLTEAILFYTGAIHRIGEVEDGTTTMDFMPEERERGISITSAATTCEWKGHKINLIDTPGHVD------FT 74 (668)
T ss_pred CCCCCCcHHHHHHHHHHhcCCCccCccccCCcccCCCChHHHhcCCCeeeceEEEEECCEEEEEEECCCcHH------HH
Confidence 599999999999999654211 001 11 12344433 2333578899999999742 11
Q ss_pred HHHHHHHhhhccCceeEEEEEEecCCc
Q 029512 159 DAWEELVSISYRNFWSCTCFLIYIFYT 185 (192)
Q Consensus 159 ~~~~~~~~l~~~~~~~~v~~vvD~s~~ 185 (192)
..+.. ....+|++++++|++..
T Consensus 75 ~~~~~-----~l~~aD~vllvvd~~~~ 96 (668)
T PRK12740 75 GEVER-----ALRVLDGAVVVVCAVGG 96 (668)
T ss_pred HHHHH-----HHHHhCeEEEEEeCCCC
Confidence 11111 12357999999998764
No 298
>COG5256 TEF1 Translation elongation factor EF-1alpha (GTPase) [Translation, ribosomal structure and biogenesis]
Probab=97.78 E-value=0.00015 Score=63.60 Aligned_cols=85 Identities=19% Similarity=0.254 Sum_probs=57.3
Q ss_pred CCCeEEEEecCCCcHHHHHHHHhhcc-----------------------CceeecC------CCCceeEEE---EEeeCC
Q 029512 91 DLPEIAFAGRSNVGKSSMLNALTRQW-----------------------GVVRTSD------KPGLTQTIN---FFKLGT 138 (192)
Q Consensus 91 ~~~~i~lvG~~n~GKStlin~L~~~~-----------------------~~~~~~~------~~g~T~~~~---~~~~~~ 138 (192)
+..+++++|...+|||||+-.|+-.. .++-+-+ .-|.|.+.. +.....
T Consensus 6 ph~nl~~iGHVD~GKSTl~GrLly~~G~id~~tmeK~~~ea~~~gK~sf~fawvlD~tkeERerGvTi~~~~~~fet~k~ 85 (428)
T COG5256 6 PHLNLVFIGHVDAGKSTLVGRLLYDLGEIDKRTMEKLEKEAKELGKESFKFAWVLDKTKEERERGVTIDVAHSKFETDKY 85 (428)
T ss_pred CceEEEEEcCCCCCchhhhhhhHHHhCCCCHHHHHHHHHHHHhcCCCceEEEEEecCChhHHhcceEEEEEEEEeecCCc
Confidence 45689999999999999999997321 0111111 235666653 223356
Q ss_pred eEEEEECCCCCCCCChHHHHHHHHHHHhhhccCceeEEEEEEecCCce
Q 029512 139 KLCLVDLPGYGFAYAKEEVKDAWEELVSISYRNFWSCTCFLIYIFYTN 186 (192)
Q Consensus 139 ~~~lvDtPG~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~~vvD~s~~~ 186 (192)
.+.|+|+||-. +...++ +..+..+|.-++||||++..
T Consensus 86 ~~tIiDaPGHr-----dFvknm------ItGasqAD~aVLVV~a~~~e 122 (428)
T COG5256 86 NFTIIDAPGHR-----DFVKNM------ITGASQADVAVLVVDARDGE 122 (428)
T ss_pred eEEEeeCCchH-----HHHHHh------hcchhhccEEEEEEECCCCc
Confidence 79999999932 333333 45566789999999999875
No 299
>PLN00043 elongation factor 1-alpha; Provisional
Probab=97.76 E-value=0.00015 Score=64.94 Aligned_cols=83 Identities=22% Similarity=0.297 Sum_probs=53.6
Q ss_pred CCCeEEEEecCCCcHHHHHHHHhhccCc-----------------------e------eecCCCCceeEEEEEe---eCC
Q 029512 91 DLPEIAFAGRSNVGKSSMLNALTRQWGV-----------------------V------RTSDKPGLTQTINFFK---LGT 138 (192)
Q Consensus 91 ~~~~i~lvG~~n~GKStlin~L~~~~~~-----------------------~------~~~~~~g~T~~~~~~~---~~~ 138 (192)
+..+++++|..++|||||+-+|+..... + ......|.|.+..... .+.
T Consensus 6 ~~~ni~i~Ghvd~GKSTL~g~Ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~a~~~D~~~~Er~rGiTi~~~~~~~~~~~~ 85 (447)
T PLN00043 6 VHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKY 85 (447)
T ss_pred ceEEEEEEecCCCCHHHHHHHHHHHhCCCcHHHHHHHhhhhhhhcccchhhhhhhcCCHhHHhcCceEEEEEEEecCCCE
Confidence 3468999999999999999988742210 0 0001225666654333 367
Q ss_pred eEEEEECCCCCCCCChHHHHHHHHHHHhhhccCceeEEEEEEecCC
Q 029512 139 KLCLVDLPGYGFAYAKEEVKDAWEELVSISYRNFWSCTCFLIYIFY 184 (192)
Q Consensus 139 ~~~lvDtPG~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~~vvD~s~ 184 (192)
.+.++||||.. +...+. +.....+|..++|+|+..
T Consensus 86 ~i~liDtPGh~-----df~~~~------~~g~~~aD~aIlVVda~~ 120 (447)
T PLN00043 86 YCTVIDAPGHR-----DFIKNM------ITGTSQADCAVLIIDSTT 120 (447)
T ss_pred EEEEEECCCHH-----HHHHHH------HhhhhhccEEEEEEEccc
Confidence 89999999942 222222 233457899999999975
No 300
>KOG0086 consensus GTPase Rab4, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.68 E-value=0.00026 Score=54.51 Aligned_cols=56 Identities=23% Similarity=0.254 Sum_probs=35.6
Q ss_pred CCeEEEEecCCCcHHHHHHHHhhccCceeecCCCCc---eeEEEEEeeCCeEEEEECCC
Q 029512 92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGL---TQTINFFKLGTKLCLVDLPG 147 (192)
Q Consensus 92 ~~~i~lvG~~n~GKStlin~L~~~~~~~~~~~~~g~---T~~~~~~~~~~~~~lvDtPG 147 (192)
..+++++|++|+|||.|+........-..++...|+ ++-++..-...++.+|||+|
T Consensus 9 LfKfl~iG~aGtGKSCLLh~Fie~kfkDdssHTiGveFgSrIinVGgK~vKLQIWDTAG 67 (214)
T KOG0086|consen 9 LFKFLVIGSAGTGKSCLLHQFIENKFKDDSSHTIGVEFGSRIVNVGGKTVKLQIWDTAG 67 (214)
T ss_pred hheeEEeccCCCChhHHHHHHHHhhhcccccceeeeeecceeeeecCcEEEEEEeeccc
Confidence 458999999999999999988865311222222222 12222222246789999999
No 301
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.67 E-value=5.9e-05 Score=65.98 Aligned_cols=25 Identities=24% Similarity=0.311 Sum_probs=22.0
Q ss_pred CCCeEEEEecCCCcHHHHHHHHhhc
Q 029512 91 DLPEIAFAGRSNVGKSSMLNALTRQ 115 (192)
Q Consensus 91 ~~~~i~lvG~~n~GKStlin~L~~~ 115 (192)
....++|+|++|+||||++..|...
T Consensus 136 ~g~ii~lvGptGvGKTTtiakLA~~ 160 (374)
T PRK14722 136 RGGVFALMGPTGVGKTTTTAKLAAR 160 (374)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHH
Confidence 3458999999999999999999864
No 302
>COG0532 InfB Translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=97.67 E-value=0.00029 Score=63.45 Aligned_cols=80 Identities=18% Similarity=0.354 Sum_probs=59.5
Q ss_pred CCCeEEEEecCCCcHHHHHHHHhhccCceeecCCCCceeEEEEEee------CCeEEEEECCCCCCCCChHHHHHHHHHH
Q 029512 91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKL------GTKLCLVDLPGYGFAYAKEEVKDAWEEL 164 (192)
Q Consensus 91 ~~~~i~lvG~~n~GKStlin~L~~~~~~~~~~~~~g~T~~~~~~~~------~~~~~lvDtPG~~~~~~~~~~~~~~~~~ 164 (192)
..|.|.++|+-.-|||||+..|.+.. .......|.|++.-.++. ...+.++||||- .+|..|
T Consensus 4 R~PvVtimGHVDHGKTtLLD~IR~t~--Va~~EaGGITQhIGA~~v~~~~~~~~~itFiDTPGH----------eAFt~m 71 (509)
T COG0532 4 RPPVVTIMGHVDHGKTTLLDKIRKTN--VAAGEAGGITQHIGAYQVPLDVIKIPGITFIDTPGH----------EAFTAM 71 (509)
T ss_pred CCCEEEEeCcccCCccchhhhHhcCc--cccccCCceeeEeeeEEEEeccCCCceEEEEcCCcH----------HHHHHH
Confidence 46899999999999999999999873 333445579999865442 268999999992 245444
Q ss_pred HhhhccCceeEEEEEEecC
Q 029512 165 VSISYRNFWSCTCFLIYIF 183 (192)
Q Consensus 165 ~~l~~~~~~~~v~~vvD~s 183 (192)
.. ....-.|.+++|||+-
T Consensus 72 Ra-RGa~vtDIaILVVa~d 89 (509)
T COG0532 72 RA-RGASVTDIAILVVAAD 89 (509)
T ss_pred Hh-cCCccccEEEEEEEcc
Confidence 43 3345679999999874
No 303
>KOG1145 consensus Mitochondrial translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=97.66 E-value=0.0003 Score=63.80 Aligned_cols=80 Identities=25% Similarity=0.458 Sum_probs=59.9
Q ss_pred CCCCeEEEEecCCCcHHHHHHHHhhccCceeecCCCCceeEEEEEe----eCCeEEEEECCCCCCCCChHHHHHHHHHHH
Q 029512 90 PDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFK----LGTKLCLVDLPGYGFAYAKEEVKDAWEELV 165 (192)
Q Consensus 90 ~~~~~i~lvG~~n~GKStlin~L~~~~~~~~~~~~~g~T~~~~~~~----~~~~~~lvDtPG~~~~~~~~~~~~~~~~~~ 165 (192)
++.|.|-++|.-.=|||||+.+|.+.. .-.+...|.|++.-.+. .|..++++||||- .+|.+|.
T Consensus 151 ~RpPVVTiMGHVDHGKTTLLD~lRks~--VAA~E~GGITQhIGAF~V~~p~G~~iTFLDTPGH----------aAF~aMR 218 (683)
T KOG1145|consen 151 PRPPVVTIMGHVDHGKTTLLDALRKSS--VAAGEAGGITQHIGAFTVTLPSGKSITFLDTPGH----------AAFSAMR 218 (683)
T ss_pred CCCCeEEEeecccCChhhHHHHHhhCc--eehhhcCCccceeceEEEecCCCCEEEEecCCcH----------HHHHHHH
Confidence 467899999999999999999999973 33345568999986544 4889999999993 2566664
Q ss_pred hhhccCceeEEEEEEec
Q 029512 166 SISYRNFWSCTCFLIYI 182 (192)
Q Consensus 166 ~l~~~~~~~~v~~vvD~ 182 (192)
. ..+...|.+++||-+
T Consensus 219 a-RGA~vtDIvVLVVAa 234 (683)
T KOG1145|consen 219 A-RGANVTDIVVLVVAA 234 (683)
T ss_pred h-ccCccccEEEEEEEc
Confidence 3 334556888888744
No 304
>PTZ00327 eukaryotic translation initiation factor 2 gamma subunit; Provisional
Probab=97.65 E-value=0.00013 Score=65.51 Aligned_cols=26 Identities=27% Similarity=0.280 Sum_probs=23.2
Q ss_pred CCCeEEEEecCCCcHHHHHHHHhhcc
Q 029512 91 DLPEIAFAGRSNVGKSSMLNALTRQW 116 (192)
Q Consensus 91 ~~~~i~lvG~~n~GKStlin~L~~~~ 116 (192)
....|+++|.-..|||||+.+|++.+
T Consensus 33 ~~~~ig~~GHVDhGKTtLv~aLtg~~ 58 (460)
T PTZ00327 33 ATINIGTIGHVAHGKSTVVKALSGVK 58 (460)
T ss_pred CcEEEEEEccCCCCHHHHHHHHhCCC
Confidence 45689999999999999999999853
No 305
>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity.; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.
Probab=97.63 E-value=0.00019 Score=59.12 Aligned_cols=19 Identities=21% Similarity=0.403 Sum_probs=16.5
Q ss_pred EEecCCCcHHHHHHHHhhc
Q 029512 97 FAGRSNVGKSSMLNALTRQ 115 (192)
Q Consensus 97 lvG~~n~GKStlin~L~~~ 115 (192)
++|++|+||||+++++...
T Consensus 1 ViGpaGSGKTT~~~~~~~~ 19 (238)
T PF03029_consen 1 VIGPAGSGKTTFCKGLSEW 19 (238)
T ss_dssp -EESTTSSHHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHH
Confidence 5899999999999999853
No 306
>KOG0077 consensus Vesicle coat complex COPII, GTPase subunit SAR1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.63 E-value=0.0002 Score=55.67 Aligned_cols=82 Identities=17% Similarity=0.317 Sum_probs=55.3
Q ss_pred CCeEEEEecCCCcHHHHHHHHhhccCceeecCCCCceeEEEEEeeCCeEEEEECCCCCCCCChHHHHHHHHHHHhhhccC
Q 029512 92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVSISYRN 171 (192)
Q Consensus 92 ~~~i~lvG~~n~GKStlin~L~~~~~~~~~~~~~g~T~~~~~~~~~~~~~lvDtPG~~~~~~~~~~~~~~~~~~~l~~~~ 171 (192)
.-++++.|-.|+|||||++.|-.. +.+.--++..-|.+ ...-.+-++.-+|.-| ....++.|.++.-
T Consensus 20 ~gKllFlGLDNAGKTTLLHMLKdD-rl~qhvPTlHPTSE-~l~Ig~m~ftt~DLGG------H~qArr~wkdyf~----- 86 (193)
T KOG0077|consen 20 FGKLLFLGLDNAGKTTLLHMLKDD-RLGQHVPTLHPTSE-ELSIGGMTFTTFDLGG------HLQARRVWKDYFP----- 86 (193)
T ss_pred CceEEEEeecCCchhhHHHHHccc-cccccCCCcCCChH-HheecCceEEEEcccc------HHHHHHHHHHHHh-----
Confidence 348999999999999999999876 33322233222322 1112367788888877 4445677777754
Q ss_pred ceeEEEEEEecCCce
Q 029512 172 FWSCTCFLIYIFYTN 186 (192)
Q Consensus 172 ~~~~v~~vvD~s~~~ 186 (192)
.++.+++++|+.+.+
T Consensus 87 ~v~~iv~lvda~d~e 101 (193)
T KOG0077|consen 87 QVDAIVYLVDAYDQE 101 (193)
T ss_pred hhceeEeeeehhhHH
Confidence 468889999987754
No 307
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.63 E-value=0.00017 Score=64.03 Aligned_cols=25 Identities=24% Similarity=0.303 Sum_probs=22.1
Q ss_pred CCCeEEEEecCCCcHHHHHHHHhhc
Q 029512 91 DLPEIAFAGRSNVGKSSMLNALTRQ 115 (192)
Q Consensus 91 ~~~~i~lvG~~n~GKStlin~L~~~ 115 (192)
....++++|++|+||||++..|.+.
T Consensus 190 ~g~vi~lvGpnG~GKTTtlakLA~~ 214 (420)
T PRK14721 190 QGGVYALIGPTGVGKTTTTAKLAAR 214 (420)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHH
Confidence 3468999999999999999999864
No 308
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=97.62 E-value=0.00026 Score=56.62 Aligned_cols=22 Identities=32% Similarity=0.567 Sum_probs=19.9
Q ss_pred eEEEEecCCCcHHHHHHHHhhc
Q 029512 94 EIAFAGRSNVGKSSMLNALTRQ 115 (192)
Q Consensus 94 ~i~lvG~~n~GKStlin~L~~~ 115 (192)
.+++||++||||||.+-.|...
T Consensus 3 vi~lvGptGvGKTTt~aKLAa~ 24 (196)
T PF00448_consen 3 VIALVGPTGVGKTTTIAKLAAR 24 (196)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCchHhHHHHHHHH
Confidence 6899999999999999999854
No 309
>cd03112 CobW_like The function of this protein family is unkown. The amino acid sequence of YjiA protein in E. coli contains several conserved motifs that characterizes it as a P-loop GTPase. YijA gene is among the genes significantly induced in response to DNA-damage caused by mitomycin. YijA gene is a homologue of the CobW gene which encodes the cobalamin synthesis protein/P47K.
Probab=97.59 E-value=0.00028 Score=54.35 Aligned_cols=23 Identities=26% Similarity=0.511 Sum_probs=20.5
Q ss_pred CeEEEEecCCCcHHHHHHHHhhc
Q 029512 93 PEIAFAGRSNVGKSSMLNALTRQ 115 (192)
Q Consensus 93 ~~i~lvG~~n~GKStlin~L~~~ 115 (192)
|.++++|..|+|||||++.+.+.
T Consensus 1 p~~~l~G~~GsGKTtl~~~l~~~ 23 (158)
T cd03112 1 PVTVLTGFLGAGKTTLLNHILTE 23 (158)
T ss_pred CEEEEEECCCCCHHHHHHHHHhc
Confidence 46789999999999999999865
No 310
>KOG0071 consensus GTP-binding ADP-ribosylation factor Arf6 (dArf3) [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.58 E-value=0.00025 Score=53.85 Aligned_cols=82 Identities=17% Similarity=0.227 Sum_probs=51.3
Q ss_pred CCeEEEEecCCCcHHHHHHHHhhccCceeecCCCCceeEEEEEeeCCeEEEEECCCCCCCCChHHHHHHHHHHHhhhccC
Q 029512 92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVSISYRN 171 (192)
Q Consensus 92 ~~~i~lvG~~n~GKStlin~L~~~~~~~~~~~~~g~T~~~~~~~~~~~~~lvDtPG~~~~~~~~~~~~~~~~~~~l~~~~ 171 (192)
..+|+.+|-+++||||++-.|.-.. ...+-++.|...+...+ -+..+.++|.-| ++.++..|..+..
T Consensus 17 E~~ilmlGLd~aGKTtiLyKLkl~~-~~~~ipTvGFnvetVty-kN~kfNvwdvGG------qd~iRplWrhYy~----- 83 (180)
T KOG0071|consen 17 EMRILMLGLDAAGKTTILYKLKLGQ-SVTTIPTVGFNVETVTY-KNVKFNVWDVGG------QDKIRPLWRHYYT----- 83 (180)
T ss_pred cceEEEEecccCCceehhhHHhcCC-CcccccccceeEEEEEe-eeeEEeeeeccC------chhhhHHHHhhcc-----
Confidence 4578889999999999999998652 23333444444442222 366778888777 4455556655532
Q ss_pred ceeEEEEEEecCCce
Q 029512 172 FWSCTCFLIYIFYTN 186 (192)
Q Consensus 172 ~~~~v~~vvD~s~~~ 186 (192)
.-.++|+|+|+.+.|
T Consensus 84 gtqglIFV~Dsa~~d 98 (180)
T KOG0071|consen 84 GTQGLIFVVDSADRD 98 (180)
T ss_pred CCceEEEEEeccchh
Confidence 234566666665543
No 311
>KOG0087 consensus GTPase Rab11/YPT3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.56 E-value=0.00015 Score=58.33 Aligned_cols=56 Identities=34% Similarity=0.355 Sum_probs=38.5
Q ss_pred CCeEEEEecCCCcHHHHHHHHhhccCceeec-CCCC---ceeEEEEEeeCCeEEEEECCCC
Q 029512 92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTS-DKPG---LTQTINFFKLGTKLCLVDLPGY 148 (192)
Q Consensus 92 ~~~i~lvG~~n~GKStlin~L~~~~~~~~~~-~~~g---~T~~~~~~~~~~~~~lvDtPG~ 148 (192)
.++|+++|.|+||||-|+...+... +..-+ .+.| .|+.+.......+..||||+|-
T Consensus 14 lFKiVliGDS~VGKsnLlsRftrnE-F~~~SksTIGvef~t~t~~vd~k~vkaqIWDTAGQ 73 (222)
T KOG0087|consen 14 LFKIVLIGDSAVGKSNLLSRFTRNE-FSLESKSTIGVEFATRTVNVDGKTVKAQIWDTAGQ 73 (222)
T ss_pred EEEEEEeCCCccchhHHHHHhcccc-cCcccccceeEEEEeeceeecCcEEEEeeecccch
Confidence 4689999999999999999999863 33222 2223 3444333333467899999993
No 312
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.53 E-value=0.00033 Score=62.13 Aligned_cols=22 Identities=23% Similarity=0.448 Sum_probs=20.0
Q ss_pred CeEEEEecCCCcHHHHHHHHhh
Q 029512 93 PEIAFAGRSNVGKSSMLNALTR 114 (192)
Q Consensus 93 ~~i~lvG~~n~GKStlin~L~~ 114 (192)
..++++|++|+||||++..|..
T Consensus 224 ~vi~lvGptGvGKTTtaaKLA~ 245 (432)
T PRK12724 224 KVVFFVGPTGSGKTTSIAKLAA 245 (432)
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4688999999999999999985
No 313
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=97.51 E-value=0.0012 Score=56.55 Aligned_cols=25 Identities=24% Similarity=0.355 Sum_probs=21.9
Q ss_pred CCCeEEEEecCCCcHHHHHHHHhhc
Q 029512 91 DLPEIAFAGRSNVGKSSMLNALTRQ 115 (192)
Q Consensus 91 ~~~~i~lvG~~n~GKStlin~L~~~ 115 (192)
....++++|++|+||||++..|.+.
T Consensus 113 ~~~vi~lvGpnGsGKTTt~~kLA~~ 137 (318)
T PRK10416 113 KPFVILVVGVNGVGKTTTIGKLAHK 137 (318)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHH
Confidence 3568999999999999999999864
No 314
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=97.50 E-value=0.00096 Score=56.01 Aligned_cols=92 Identities=15% Similarity=0.190 Sum_probs=52.0
Q ss_pred CCCeEEEEecCCCcHHHHHHHHhhcc-----Cceeec-CCC--C---------ceeEEEEE-------------------
Q 029512 91 DLPEIAFAGRSNVGKSSMLNALTRQW-----GVVRTS-DKP--G---------LTQTINFF------------------- 134 (192)
Q Consensus 91 ~~~~i~lvG~~n~GKStlin~L~~~~-----~~~~~~-~~~--g---------~T~~~~~~------------------- 134 (192)
....++++|++|+||||++..|.... .+.... +.. + .-......
T Consensus 71 ~~~vi~l~G~~G~GKTTt~akLA~~l~~~g~~V~li~~D~~r~~a~~ql~~~~~~~~i~~~~~~~~~dp~~~~~~~l~~~ 150 (272)
T TIGR00064 71 KPNVILFVGVNGVGKTTTIAKLANKLKKQGKSVLLAAGDTFRAAAIEQLEEWAKRLGVDVIKQKEGADPAAVAFDAIQKA 150 (272)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeCCCCCHHHHHHHHHHHHhCCeEEEeCCCCCCHHHHHHHHHHHH
Confidence 34588999999999999999887431 111111 110 0 00001111
Q ss_pred -eeCCeEEEEECCCCCCCCChHHHHHHHHHHHhhhc---cCceeEEEEEEecCC
Q 029512 135 -KLGTKLCLVDLPGYGFAYAKEEVKDAWEELVSISY---RNFWSCTCFLIYIFY 184 (192)
Q Consensus 135 -~~~~~~~lvDtPG~~~~~~~~~~~~~~~~~~~l~~---~~~~~~v~~vvD~s~ 184 (192)
..+..+.++||||.... +......+..+.+... ....+.+++|+|+.-
T Consensus 151 ~~~~~D~ViIDT~G~~~~--d~~~~~el~~~~~~~~~~~~~~~~~~~LVl~a~~ 202 (272)
T TIGR00064 151 KARNIDVVLIDTAGRLQN--KVNLMDELKKIKRVIKKVDKDAPDEVLLVLDATT 202 (272)
T ss_pred HHCCCCEEEEeCCCCCcc--hHHHHHHHHHHHHHHhcccCCCCceEEEEEECCC
Confidence 12467999999997642 3333334444443211 234688999999864
No 315
>KOG0448 consensus Mitofusin 1 GTPase, involved in mitochondrila biogenesis [Posttranslational modification, protein turnover, chaperones]
Probab=97.49 E-value=0.00043 Score=64.05 Aligned_cols=24 Identities=33% Similarity=0.592 Sum_probs=21.9
Q ss_pred CCeEEEEecCCCcHHHHHHHHhhc
Q 029512 92 LPEIAFAGRSNVGKSSMLNALTRQ 115 (192)
Q Consensus 92 ~~~i~lvG~~n~GKStlin~L~~~ 115 (192)
..+|++.|.+++||||++|+++..
T Consensus 109 ~mKV~ifGrts~GKSt~iNAmL~~ 132 (749)
T KOG0448|consen 109 HMKVAIFGRTSAGKSTVINAMLHK 132 (749)
T ss_pred ccEEEEeCCCCCcHHHHHHHHHHH
Confidence 459999999999999999999965
No 316
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=97.48 E-value=0.00011 Score=55.38 Aligned_cols=53 Identities=23% Similarity=0.201 Sum_probs=32.5
Q ss_pred EEEEecCCCcHHHHHHHHhhccCceeecCCCCceeEEEEEe-eCCeEEEEECCC
Q 029512 95 IAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFK-LGTKLCLVDLPG 147 (192)
Q Consensus 95 i~lvG~~n~GKStlin~L~~~~~~~~~~~~~g~T~~~~~~~-~~~~~~lvDtPG 147 (192)
++|+|+||+|||||++.|.+..........+.+|+.+.... .+..+.++|...
T Consensus 2 i~i~GpsGsGKstl~~~L~~~~~~~~~~~v~~tTr~p~~~e~~g~~~~~v~~~~ 55 (137)
T cd00071 2 IVLSGPSGVGKSTLLKRLLEEFDPNFGFSVSHTTRKPRPGEVDGVDYHFVSKEE 55 (137)
T ss_pred EEEECCCCCCHHHHHHHHHhcCCccceecccccccCCCCCccCCceeEEeCHHH
Confidence 68999999999999999998632122223334565543222 245555555433
No 317
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=97.47 E-value=8.1e-05 Score=61.35 Aligned_cols=25 Identities=28% Similarity=0.278 Sum_probs=22.2
Q ss_pred CCeEEEEecCCCcHHHHHHHHhhcc
Q 029512 92 LPEIAFAGRSNVGKSSMLNALTRQW 116 (192)
Q Consensus 92 ~~~i~lvG~~n~GKStlin~L~~~~ 116 (192)
+--|+++|+||||||||+|.+.|-.
T Consensus 29 GEfvsilGpSGcGKSTLLriiAGL~ 53 (248)
T COG1116 29 GEFVAILGPSGCGKSTLLRLIAGLE 53 (248)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 4478999999999999999999863
No 318
>KOG0458 consensus Elongation factor 1 alpha [Translation, ribosomal structure and biogenesis]
Probab=97.45 E-value=0.0005 Score=62.57 Aligned_cols=84 Identities=17% Similarity=0.192 Sum_probs=56.2
Q ss_pred CCCeEEEEecCCCcHHHHHHHHhhcc-----------------------Cc------eeecCCCCceeEEEEEe---eCC
Q 029512 91 DLPEIAFAGRSNVGKSSMLNALTRQW-----------------------GV------VRTSDKPGLTQTINFFK---LGT 138 (192)
Q Consensus 91 ~~~~i~lvG~~n~GKStlin~L~~~~-----------------------~~------~~~~~~~g~T~~~~~~~---~~~ 138 (192)
....++++|..++|||||+..|+-.. .+ .......|+|.+....+ ...
T Consensus 176 ~~l~lvv~GhVdaGKSTLmG~lLydLg~i~~~~m~kl~~es~~~Gk~Sf~yawiLDeT~eERerGvTm~v~~~~fes~~~ 255 (603)
T KOG0458|consen 176 DHLNLVVLGHVDAGKSTLMGHLLYDLGEISSRSMHKLERESKNLGKSSFAYAWILDETKEERERGVTMDVKTTWFESKSK 255 (603)
T ss_pred cceEEEEEeccccchhhhhhHHHHHhcCccHHHHHHHHHHHHhcCCcceeeeEEeccchhhhhcceeEEeeeEEEecCce
Confidence 55688999999999999999997321 00 01112235777664322 356
Q ss_pred eEEEEECCCCCCCCChHHHHHHHHHHHhhhccCceeEEEEEEecCCc
Q 029512 139 KLCLVDLPGYGFAYAKEEVKDAWEELVSISYRNFWSCTCFLIYIFYT 185 (192)
Q Consensus 139 ~~~lvDtPG~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~~vvD~s~~ 185 (192)
.+.|+|+||..+-.+ ++ +.....+|+.++||||+.-
T Consensus 256 ~~tliDaPGhkdFi~-----nm------i~g~sqaD~avLvvd~s~~ 291 (603)
T KOG0458|consen 256 IVTLIDAPGHKDFIP-----NM------ISGASQADVAVLVVDASTG 291 (603)
T ss_pred eEEEecCCCccccch-----hh------hccccccceEEEEEECCcc
Confidence 799999999543222 22 4456678999999999864
No 319
>KOG0091 consensus GTPase Rab39, small G protein superfamily [General function prediction only]
Probab=97.44 E-value=0.00023 Score=55.35 Aligned_cols=53 Identities=32% Similarity=0.347 Sum_probs=34.9
Q ss_pred CeEEEEecCCCcHHHHHHHHhhccCceeec-CCCCce---eEEEEEee--CCeEEEEECCC
Q 029512 93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTS-DKPGLT---QTINFFKL--GTKLCLVDLPG 147 (192)
Q Consensus 93 ~~i~lvG~~n~GKStlin~L~~~~~~~~~~-~~~g~T---~~~~~~~~--~~~~~lvDtPG 147 (192)
.+++++|.+-||||+|+...+..+ .+.-+ ++-|+. +-. .... ..++.||||+|
T Consensus 9 frlivigdstvgkssll~~ft~gk-faelsdptvgvdffarli-e~~pg~riklqlwdtag 67 (213)
T KOG0091|consen 9 FRLIVIGDSTVGKSSLLRYFTEGK-FAELSDPTVGVDFFARLI-ELRPGYRIKLQLWDTAG 67 (213)
T ss_pred EEEEEEcCCcccHHHHHHHHhcCc-ccccCCCccchHHHHHHH-hcCCCcEEEEEEeeccc
Confidence 478899999999999999999763 33333 332321 111 1111 35789999999
No 320
>KOG0076 consensus GTP-binding ADP-ribosylation factor-like protein yARL3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.42 E-value=0.00036 Score=54.67 Aligned_cols=84 Identities=20% Similarity=0.279 Sum_probs=56.7
Q ss_pred CCeEEEEecCCCcHHHHHHHHhhccCceeecCCCC---ceeEEEEEe---eCCeEEEEECCCCCCCCChHHHHHHHHHHH
Q 029512 92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPG---LTQTINFFK---LGTKLCLVDLPGYGFAYAKEEVKDAWEELV 165 (192)
Q Consensus 92 ~~~i~lvG~~n~GKStlin~L~~~~~~~~~~~~~g---~T~~~~~~~---~~~~~~lvDtPG~~~~~~~~~~~~~~~~~~ 165 (192)
...++|.|..|+||+|++-++-.....+...-.+. .|.-.+... ....+.+||.-| ++.++..|..+-
T Consensus 17 ~y~vlIlgldnAGKttfLe~~Kt~~~~~~~~l~~~ki~~tvgLnig~i~v~~~~l~fwdlgG------Qe~lrSlw~~yY 90 (197)
T KOG0076|consen 17 DYSVLILGLDNAGKTTFLEALKTDFSKAYGGLNPSKITPTVGLNIGTIEVCNAPLSFWDLGG------QESLRSLWKKYY 90 (197)
T ss_pred hhhheeeccccCCchhHHHHHHHHHHhhhcCCCHHHeecccceeecceeeccceeEEEEcCC------hHHHHHHHHHHH
Confidence 34789999999999999998875421111111111 122222221 267789999887 677888998886
Q ss_pred hhhccCceeEEEEEEecCCce
Q 029512 166 SISYRNFWSCTCFLIYIFYTN 186 (192)
Q Consensus 166 ~l~~~~~~~~v~~vvD~s~~~ 186 (192)
. .+.++++++|+.+++
T Consensus 91 ~-----~~H~ii~viDa~~~e 106 (197)
T KOG0076|consen 91 W-----LAHGIIYVIDATDRE 106 (197)
T ss_pred H-----HhceeEEeecCCCHH
Confidence 5 468999999999865
No 321
>COG5192 BMS1 GTP-binding protein required for 40S ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=97.38 E-value=0.00043 Score=63.19 Aligned_cols=76 Identities=16% Similarity=0.240 Sum_probs=44.1
Q ss_pred CCCeEEEEecCCCcHHHHHHHHhhccCceeecCCCC-ceeEEEEEeeCCeEEEEECCCCCCCCChHHHHHHHHHHHhhhc
Q 029512 91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPG-LTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVSISY 169 (192)
Q Consensus 91 ~~~~i~lvG~~n~GKStlin~L~~~~~~~~~~~~~g-~T~~~~~~~~~~~~~lvDtPG~~~~~~~~~~~~~~~~~~~l~~ 169 (192)
+...++++|+||+||||||.+|.............| .|.- ..-...+.++.+|. .+..+++ -
T Consensus 68 PPfIvavvGPpGtGKsTLirSlVrr~tk~ti~~i~GPiTvv---sgK~RRiTflEcp~------------Dl~~miD--v 130 (1077)
T COG5192 68 PPFIVAVVGPPGTGKSTLIRSLVRRFTKQTIDEIRGPITVV---SGKTRRITFLECPS------------DLHQMID--V 130 (1077)
T ss_pred CCeEEEeecCCCCChhHHHHHHHHHHHHhhhhccCCceEEe---ecceeEEEEEeChH------------HHHHHHh--H
Confidence 445777999999999999999998631111112112 1111 01134567777772 1223322 2
Q ss_pred cCceeEEEEEEecC
Q 029512 170 RNFWSCTCFLIYIF 183 (192)
Q Consensus 170 ~~~~~~v~~vvD~s 183 (192)
++-+|+|+++||+.
T Consensus 131 aKIaDLVlLlIdgn 144 (1077)
T COG5192 131 AKIADLVLLLIDGN 144 (1077)
T ss_pred HHhhheeEEEeccc
Confidence 33468889998874
No 322
>PRK14737 gmk guanylate kinase; Provisional
Probab=97.36 E-value=0.00016 Score=57.28 Aligned_cols=40 Identities=15% Similarity=0.045 Sum_probs=28.8
Q ss_pred CCCeEEEEecCCCcHHHHHHHHhhccCceeecCCCCceeEE
Q 029512 91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTI 131 (192)
Q Consensus 91 ~~~~i~lvG~~n~GKStlin~L~~~~~~~~~~~~~g~T~~~ 131 (192)
+...|+|+|++|+|||||++.|+... .......+.|||.+
T Consensus 3 ~~~~ivl~GpsG~GK~tl~~~l~~~~-~~~~~~v~~TTR~~ 42 (186)
T PRK14737 3 SPKLFIISSVAGGGKSTIIQALLEEH-PDFLFSISCTTRAP 42 (186)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHhcC-CccccccCccCCCC
Confidence 35579999999999999999999863 12233345566654
No 323
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=97.35 E-value=0.00059 Score=60.00 Aligned_cols=25 Identities=32% Similarity=0.530 Sum_probs=22.4
Q ss_pred CCeEEEEecCCCcHHHHHHHHhhcc
Q 029512 92 LPEIAFAGRSNVGKSSMLNALTRQW 116 (192)
Q Consensus 92 ~~~i~lvG~~n~GKStlin~L~~~~ 116 (192)
...++|||+|||||||.+-.|....
T Consensus 203 ~~vi~LVGPTGVGKTTTlAKLAar~ 227 (407)
T COG1419 203 KRVIALVGPTGVGKTTTLAKLAARY 227 (407)
T ss_pred CcEEEEECCCCCcHHHHHHHHHHHH
Confidence 5689999999999999999998753
No 324
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.35 E-value=0.00035 Score=61.69 Aligned_cols=23 Identities=30% Similarity=0.543 Sum_probs=20.9
Q ss_pred CCeEEEEecCCCcHHHHHHHHhh
Q 029512 92 LPEIAFAGRSNVGKSSMLNALTR 114 (192)
Q Consensus 92 ~~~i~lvG~~n~GKStlin~L~~ 114 (192)
...|+|+|++|+||||++..|+.
T Consensus 241 ~~vI~LVGptGvGKTTTiaKLA~ 263 (436)
T PRK11889 241 VQTIALIGPTGVGKTTTLAKMAW 263 (436)
T ss_pred CcEEEEECCCCCcHHHHHHHHHH
Confidence 35899999999999999999985
No 325
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=97.32 E-value=0.00014 Score=56.55 Aligned_cols=24 Identities=38% Similarity=0.469 Sum_probs=21.5
Q ss_pred CeEEEEecCCCcHHHHHHHHhhcc
Q 029512 93 PEIAFAGRSNVGKSSMLNALTRQW 116 (192)
Q Consensus 93 ~~i~lvG~~n~GKStlin~L~~~~ 116 (192)
..++|+|++|+|||||++.|.+..
T Consensus 2 ~ii~l~G~~GsGKsTl~~~L~~~~ 25 (180)
T TIGR03263 2 LLIVISGPSGVGKSTLVKALLEED 25 (180)
T ss_pred cEEEEECCCCCCHHHHHHHHHccC
Confidence 368999999999999999999863
No 326
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=97.32 E-value=0.00079 Score=58.11 Aligned_cols=24 Identities=33% Similarity=0.506 Sum_probs=21.0
Q ss_pred CCCeEEEEecCCCcHHHHHHHHhh
Q 029512 91 DLPEIAFAGRSNVGKSSMLNALTR 114 (192)
Q Consensus 91 ~~~~i~lvG~~n~GKStlin~L~~ 114 (192)
....|++.|.+|+|||||++.|..
T Consensus 55 ~~~~igi~G~~GaGKSTl~~~l~~ 78 (332)
T PRK09435 55 NALRIGITGVPGVGKSTFIEALGM 78 (332)
T ss_pred CcEEEEEECCCCCCHHHHHHHHHH
Confidence 356899999999999999998764
No 327
>KOG1954 consensus Endocytosis/signaling protein EHD1 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.31 E-value=0.00074 Score=58.83 Aligned_cols=27 Identities=26% Similarity=0.377 Sum_probs=24.0
Q ss_pred CCCCeEEEEecCCCcHHHHHHHHhhcc
Q 029512 90 PDLPEIAFAGRSNVGKSSMLNALTRQW 116 (192)
Q Consensus 90 ~~~~~i~lvG~~n~GKStlin~L~~~~ 116 (192)
...|-|+++|+-..||||+||-|+...
T Consensus 56 d~KPmill~GqyStGKTtfi~yLle~d 82 (532)
T KOG1954|consen 56 DAKPMILLVGQYSTGKTTFIRYLLEQD 82 (532)
T ss_pred ccCceEEEEeccccchhHHHHHHHhCC
Confidence 357899999999999999999999863
No 328
>KOG0079 consensus GTP-binding protein H-ray, small G protein superfamily [General function prediction only]
Probab=97.29 E-value=0.0013 Score=50.46 Aligned_cols=76 Identities=21% Similarity=0.196 Sum_probs=43.2
Q ss_pred eEEEEecCCCcHHHHHHHHhhccCceeecCCCCceeEEE----EEe---eCCeEEEEECCCCCCCCChHHHHHHHHHHHh
Q 029512 94 EIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTIN----FFK---LGTKLCLVDLPGYGFAYAKEEVKDAWEELVS 166 (192)
Q Consensus 94 ~i~lvG~~n~GKStlin~L~~~~~~~~~~~~~g~T~~~~----~~~---~~~~~~lvDtPG~~~~~~~~~~~~~~~~~~~ 166 (192)
+..|+|.||+|||+|+-...... ..+.+ -+|.-+. ... ...+++||||+| ++ .|..+.+
T Consensus 10 kllIigDsgVGKssLl~rF~ddt---Fs~sY-itTiGvDfkirTv~i~G~~VkLqIwDtAG------qE----rFrtits 75 (198)
T KOG0079|consen 10 KLLIIGDSGVGKSSLLLRFADDT---FSGSY-ITTIGVDFKIRTVDINGDRVKLQIWDTAG------QE----RFRTITS 75 (198)
T ss_pred HHHeecCCcccHHHHHHHHhhcc---cccce-EEEeeeeEEEEEeecCCcEEEEEEeeccc------HH----HHHHHHH
Confidence 55788999999999998777542 11221 1222111 112 235789999999 33 3334433
Q ss_pred hhccCceeEEEEEEecCC
Q 029512 167 ISYRNFWSCTCFLIYIFY 184 (192)
Q Consensus 167 l~~~~~~~~v~~vvD~s~ 184 (192)
...+.-.++++|.|...
T Consensus 76 -tyyrgthgv~vVYDVTn 92 (198)
T KOG0079|consen 76 -TYYRGTHGVIVVYDVTN 92 (198)
T ss_pred -HHccCCceEEEEEECcc
Confidence 11233456777777643
No 329
>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]
Probab=97.26 E-value=0.00013 Score=57.78 Aligned_cols=39 Identities=26% Similarity=0.197 Sum_probs=28.2
Q ss_pred CCeEEEEecCCCcHHHHHHHHhhccCceeecCCCCceeEEE
Q 029512 92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTIN 132 (192)
Q Consensus 92 ~~~i~lvG~~n~GKStlin~L~~~~~~~~~~~~~g~T~~~~ 132 (192)
+..++|.|+||||||||+++|.... ...-....|||.+.
T Consensus 4 G~l~vlsgPSG~GKsTl~k~L~~~~--~l~~SVS~TTR~pR 42 (191)
T COG0194 4 GLLIVLSGPSGVGKSTLVKALLEDD--KLRFSVSATTRKPR 42 (191)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhhc--CeEEEEEeccCCCC
Confidence 4578999999999999999999874 22222334666554
No 330
>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]
Probab=97.26 E-value=0.00026 Score=56.30 Aligned_cols=25 Identities=32% Similarity=0.381 Sum_probs=22.4
Q ss_pred CCCeEEEEecCCCcHHHHHHHHhhc
Q 029512 91 DLPEIAFAGRSNVGKSSMLNALTRQ 115 (192)
Q Consensus 91 ~~~~i~lvG~~n~GKStlin~L~~~ 115 (192)
..-.++++|++|+|||||+|.+.|-
T Consensus 24 ~ge~vAi~GpSGaGKSTLLnLIAGF 48 (231)
T COG3840 24 AGEIVAILGPSGAGKSTLLNLIAGF 48 (231)
T ss_pred CCcEEEEECCCCccHHHHHHHHHhc
Confidence 3458999999999999999999985
No 331
>KOG0093 consensus GTPase Rab3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.24 E-value=0.0017 Score=49.71 Aligned_cols=54 Identities=26% Similarity=0.257 Sum_probs=35.4
Q ss_pred CCeEEEEecCCCcHHHHHHHHhhccCceeecCC---CCceeEEEEEe---eCCeEEEEECCCC
Q 029512 92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDK---PGLTQTINFFK---LGTKLCLVDLPGY 148 (192)
Q Consensus 92 ~~~i~lvG~~n~GKStlin~L~~~~~~~~~~~~---~g~T~~~~~~~---~~~~~~lvDtPG~ 148 (192)
..++.++|.+.+||+|++...++.. .++.. -|.--.....+ -..++++|||+|-
T Consensus 21 mfKlliiGnssvGKTSfl~ry~ddS---Ft~afvsTvGidFKvKTvyr~~kRiklQiwDTagq 80 (193)
T KOG0093|consen 21 MFKLLIIGNSSVGKTSFLFRYADDS---FTSAFVSTVGIDFKVKTVYRSDKRIKLQIWDTAGQ 80 (193)
T ss_pred eeeEEEEccCCccchhhhHHhhccc---cccceeeeeeeeEEEeEeeecccEEEEEEEecccc
Confidence 4599999999999999999999873 11111 11111111111 2467999999994
No 332
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=97.23 E-value=0.00033 Score=51.81 Aligned_cols=25 Identities=32% Similarity=0.399 Sum_probs=22.7
Q ss_pred CCeEEEEecCCCcHHHHHHHHhhcc
Q 029512 92 LPEIAFAGRSNVGKSSMLNALTRQW 116 (192)
Q Consensus 92 ~~~i~lvG~~n~GKStlin~L~~~~ 116 (192)
+-.++|+|++|+|||||++.|+|..
T Consensus 11 g~~~~i~G~nGsGKStLl~~l~g~~ 35 (137)
T PF00005_consen 11 GEIVAIVGPNGSGKSTLLKALAGLL 35 (137)
T ss_dssp TSEEEEEESTTSSHHHHHHHHTTSS
T ss_pred CCEEEEEccCCCccccceeeecccc
Confidence 4589999999999999999999974
No 333
>COG3523 IcmF Type VI protein secretion system component VasK [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.22 E-value=0.001 Score=65.49 Aligned_cols=93 Identities=18% Similarity=0.249 Sum_probs=64.8
Q ss_pred CCCCeEEEEecCCCcHHHHHHHHhhccCce-----eecCCCCceeEEEEEeeCCeEEEEECCCCCC-C-CChHHHHHHHH
Q 029512 90 PDLPEIAFAGRSNVGKSSMLNALTRQWGVV-----RTSDKPGLTQTINFFKLGTKLCLVDLPGYGF-A-YAKEEVKDAWE 162 (192)
Q Consensus 90 ~~~~~i~lvG~~n~GKStlin~L~~~~~~~-----~~~~~~g~T~~~~~~~~~~~~~lvDtPG~~~-~-~~~~~~~~~~~ 162 (192)
...|.-++||++|+||||++...--...+. ..-..+| |+.|.+. .+..-+++||.|=.. . ...+.....|.
T Consensus 123 yeLPWy~viG~pgsGKTtal~~sgl~Fpl~~~~~~~~~~~~g-T~~cdww-f~deaVlIDtaGry~~q~s~~~~~~~~W~ 200 (1188)
T COG3523 123 YELPWYMVIGPPGSGKTTALLNSGLQFPLAEQMGALGLAGPG-TRNCDWW-FTDEAVLIDTAGRYITQDSADEVDRAEWL 200 (1188)
T ss_pred hcCCceEEecCCCCCcchHHhcccccCcchhhhccccccCCC-CcccCcc-cccceEEEcCCcceecccCcchhhHHHHH
Confidence 467899999999999999987654321111 1122334 7887754 366779999999433 2 24456677898
Q ss_pred HHHh----hhccCceeEEEEEEecCC
Q 029512 163 ELVS----ISYRNFWSCTCFLIYIFY 184 (192)
Q Consensus 163 ~~~~----l~~~~~~~~v~~vvD~s~ 184 (192)
.+++ ....+.+++|++-+|.++
T Consensus 201 ~fL~lLkk~R~~~piNGiiltlsv~~ 226 (1188)
T COG3523 201 GFLGLLKKYRRRRPLNGIILTLSVSD 226 (1188)
T ss_pred HHHHHHHHhccCCCCceEEEEEEHHH
Confidence 8877 456788999999998753
No 334
>PRK14738 gmk guanylate kinase; Provisional
Probab=97.18 E-value=0.00032 Score=56.30 Aligned_cols=25 Identities=24% Similarity=0.411 Sum_probs=21.5
Q ss_pred CCCeEEEEecCCCcHHHHHHHHhhc
Q 029512 91 DLPEIAFAGRSNVGKSSMLNALTRQ 115 (192)
Q Consensus 91 ~~~~i~lvG~~n~GKStlin~L~~~ 115 (192)
....++|+|++|+|||||++.|...
T Consensus 12 ~~~~ivi~GpsG~GK~tl~~~L~~~ 36 (206)
T PRK14738 12 KPLLVVISGPSGVGKDAVLARMRER 36 (206)
T ss_pred CCeEEEEECcCCCCHHHHHHHHHhc
Confidence 4457889999999999999999864
No 335
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.16 E-value=0.00073 Score=63.96 Aligned_cols=24 Identities=25% Similarity=0.364 Sum_probs=21.5
Q ss_pred CCeEEEEecCCCcHHHHHHHHhhc
Q 029512 92 LPEIAFAGRSNVGKSSMLNALTRQ 115 (192)
Q Consensus 92 ~~~i~lvG~~n~GKStlin~L~~~ 115 (192)
...++++|++|+||||++..|++.
T Consensus 185 g~Vi~lVGpnGvGKTTTiaKLA~~ 208 (767)
T PRK14723 185 GGVLALVGPTGVGKTTTTAKLAAR 208 (767)
T ss_pred CeEEEEECCCCCcHHHHHHHHHhh
Confidence 348899999999999999999964
No 336
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=97.15 E-value=0.00031 Score=57.42 Aligned_cols=25 Identities=36% Similarity=0.310 Sum_probs=22.0
Q ss_pred CCeEEEEecCCCcHHHHHHHHhhcc
Q 029512 92 LPEIAFAGRSNVGKSSMLNALTRQW 116 (192)
Q Consensus 92 ~~~i~lvG~~n~GKStlin~L~~~~ 116 (192)
+-.++|+|+||+|||||+|.|.+-.
T Consensus 31 Ge~vaI~GpSGSGKSTLLniig~ld 55 (226)
T COG1136 31 GEFVAIVGPSGSGKSTLLNLLGGLD 55 (226)
T ss_pred CCEEEEECCCCCCHHHHHHHHhccc
Confidence 4489999999999999999998753
No 337
>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]
Probab=97.15 E-value=0.00074 Score=61.51 Aligned_cols=86 Identities=14% Similarity=0.106 Sum_probs=54.2
Q ss_pred CCCeEEEEecCCCcHHHHHHHHhhccCceeecCC-CCceeEEEEEeeCCeEEEEECCCCCCCCChHHHHHHHHHHHhhhc
Q 029512 91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDK-PGLTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVSISY 169 (192)
Q Consensus 91 ~~~~i~lvG~~n~GKStlin~L~~~~~~~~~~~~-~g~T~~~~~~~~~~~~~lvDtPG~~~~~~~~~~~~~~~~~~~l~~ 169 (192)
...+|+++|..||||||||-+|+.......+... +-+|.=........+..++||.-- ......+ ..+
T Consensus 8 kdVRIvliGD~G~GKtSLImSL~~eef~~~VP~rl~~i~IPadvtPe~vpt~ivD~ss~--~~~~~~l---------~~E 76 (625)
T KOG1707|consen 8 KDVRIVLIGDEGVGKTSLIMSLLEEEFVDAVPRRLPRILIPADVTPENVPTSIVDTSSD--SDDRLCL---------RKE 76 (625)
T ss_pred cceEEEEECCCCccHHHHHHHHHhhhccccccccCCccccCCccCcCcCceEEEecccc--cchhHHH---------HHH
Confidence 3569999999999999999999987422222221 112222334455667899999831 1111111 234
Q ss_pred cCceeEEEEEEecCCceE
Q 029512 170 RNFWSCTCFLIYIFYTNV 187 (192)
Q Consensus 170 ~~~~~~v~~vvD~s~~~~ 187 (192)
.+.+++++++..+.++.+
T Consensus 77 irkA~vi~lvyavd~~~T 94 (625)
T KOG1707|consen 77 IRKADVICLVYAVDDEST 94 (625)
T ss_pred HhhcCEEEEEEecCChHH
Confidence 466889999888777654
No 338
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.13 E-value=0.0013 Score=58.52 Aligned_cols=24 Identities=29% Similarity=0.441 Sum_probs=20.6
Q ss_pred CCeEEEEecCCCcHHHHHHHHhhc
Q 029512 92 LPEIAFAGRSNVGKSSMLNALTRQ 115 (192)
Q Consensus 92 ~~~i~lvG~~n~GKStlin~L~~~ 115 (192)
...++++|++||||||++..|...
T Consensus 221 ~~~i~~vGptGvGKTTt~~kLA~~ 244 (424)
T PRK05703 221 GGVVALVGPTGVGKTTTLAKLAAR 244 (424)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHH
Confidence 458999999999999999888753
No 339
>PRK13768 GTPase; Provisional
Probab=97.10 E-value=0.00091 Score=55.45 Aligned_cols=44 Identities=30% Similarity=0.336 Sum_probs=27.2
Q ss_pred CeEEEEECCCCCCCCChHHHHHHHHHHHh-hhccCceeEEEEEEecCCc
Q 029512 138 TKLCLVDLPGYGFAYAKEEVKDAWEELVS-ISYRNFWSCTCFLIYIFYT 185 (192)
Q Consensus 138 ~~~~lvDtPG~~~~~~~~~~~~~~~~~~~-l~~~~~~~~v~~vvD~s~~ 185 (192)
..+.++||||....... ...+..+.+ +.... .+.+++|+|+++.
T Consensus 97 ~~~~~~d~~g~~~~~~~---~~~~~~~~~~l~~~~-~~~ii~liD~~~~ 141 (253)
T PRK13768 97 ADYVLVDTPGQMELFAF---RESGRKLVERLSGSS-KSVVVFLIDAVLA 141 (253)
T ss_pred CCEEEEeCCcHHHHHhh---hHHHHHHHHHHHhcC-CeEEEEEechHHh
Confidence 46999999996542221 223444444 32222 7899999999653
No 340
>KOG0780 consensus Signal recognition particle, subunit Srp54 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.09 E-value=0.0022 Score=56.15 Aligned_cols=90 Identities=19% Similarity=0.231 Sum_probs=57.4
Q ss_pred CCCCeEEEEecCCCcHHHHHHHHhhcc-----CceeecC---CCC--------ceeE-EEEEe-----------------
Q 029512 90 PDLPEIAFAGRSNVGKSSMLNALTRQW-----GVVRTSD---KPG--------LTQT-INFFK----------------- 135 (192)
Q Consensus 90 ~~~~~i~lvG~~n~GKStlin~L~~~~-----~~~~~~~---~~g--------~T~~-~~~~~----------------- 135 (192)
...-.|++||-.|+||||.+-.|...+ +.+-+.. .+| .|+. +.+|.
T Consensus 99 ~kpsVimfVGLqG~GKTTtc~KlA~y~kkkG~K~~LvcaDTFRagAfDQLkqnA~k~~iP~ygsyte~dpv~ia~egv~~ 178 (483)
T KOG0780|consen 99 GKPSVIMFVGLQGSGKTTTCTKLAYYYKKKGYKVALVCADTFRAGAFDQLKQNATKARVPFYGSYTEADPVKIASEGVDR 178 (483)
T ss_pred CCCcEEEEEeccCCCcceeHHHHHHHHHhcCCceeEEeecccccchHHHHHHHhHhhCCeeEecccccchHHHHHHHHHH
Confidence 445588999999999999999998432 1111111 111 1111 11111
Q ss_pred ---eCCeEEEEECCCCCCCCChHHHHHHHHHHHhhhccCceeEEEEEEecCC
Q 029512 136 ---LGTKLCLVDLPGYGFAYAKEEVKDAWEELVSISYRNFWSCTCFLIYIFY 184 (192)
Q Consensus 136 ---~~~~~~lvDtPG~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~~vvD~s~ 184 (192)
++..+.|+||.|=.. .. ...|.++.++.+.-.-|.+++|+|++-
T Consensus 179 fKke~fdvIIvDTSGRh~--qe---~sLfeEM~~v~~ai~Pd~vi~VmDasi 225 (483)
T KOG0780|consen 179 FKKENFDVIIVDTSGRHK--QE---ASLFEEMKQVSKAIKPDEIIFVMDASI 225 (483)
T ss_pred HHhcCCcEEEEeCCCchh--hh---HHHHHHHHHHHhhcCCCeEEEEEeccc
Confidence 246799999999432 12 346777777777777899999999863
No 341
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=97.08 E-value=0.00071 Score=44.20 Aligned_cols=22 Identities=27% Similarity=0.466 Sum_probs=19.6
Q ss_pred CeEEEEecCCCcHHHHHHHHhh
Q 029512 93 PEIAFAGRSNVGKSSMLNALTR 114 (192)
Q Consensus 93 ~~i~lvG~~n~GKStlin~L~~ 114 (192)
...+|.|++|+||||++.++.-
T Consensus 24 ~~tli~G~nGsGKSTllDAi~~ 45 (62)
T PF13555_consen 24 DVTLITGPNGSGKSTLLDAIQT 45 (62)
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 3689999999999999999874
No 342
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=97.05 E-value=0.00058 Score=49.37 Aligned_cols=22 Identities=27% Similarity=0.475 Sum_probs=20.5
Q ss_pred eEEEEecCCCcHHHHHHHHhhc
Q 029512 94 EIAFAGRSNVGKSSMLNALTRQ 115 (192)
Q Consensus 94 ~i~lvG~~n~GKStlin~L~~~ 115 (192)
.|+|.|+||+||||+.+.|...
T Consensus 1 vI~I~G~~gsGKST~a~~La~~ 22 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAER 22 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 4899999999999999999986
No 343
>PRK14974 cell division protein FtsY; Provisional
Probab=97.04 E-value=0.00099 Score=57.61 Aligned_cols=23 Identities=26% Similarity=0.410 Sum_probs=20.3
Q ss_pred CCeEEEEecCCCcHHHHHHHHhh
Q 029512 92 LPEIAFAGRSNVGKSSMLNALTR 114 (192)
Q Consensus 92 ~~~i~lvG~~n~GKStlin~L~~ 114 (192)
...|+++|.+|+||||++..|+.
T Consensus 140 ~~vi~~~G~~GvGKTTtiakLA~ 162 (336)
T PRK14974 140 PVVIVFVGVNGTGKTTTIAKLAY 162 (336)
T ss_pred CeEEEEEcCCCCCHHHHHHHHHH
Confidence 45899999999999998888874
No 344
>PRK00300 gmk guanylate kinase; Provisional
Probab=97.04 E-value=0.00069 Score=53.73 Aligned_cols=26 Identities=31% Similarity=0.341 Sum_probs=23.0
Q ss_pred CCCeEEEEecCCCcHHHHHHHHhhcc
Q 029512 91 DLPEIAFAGRSNVGKSSMLNALTRQW 116 (192)
Q Consensus 91 ~~~~i~lvG~~n~GKStlin~L~~~~ 116 (192)
.+..|+|+|++|+|||||++.|.+..
T Consensus 4 ~g~~i~i~G~sGsGKstl~~~l~~~~ 29 (205)
T PRK00300 4 RGLLIVLSGPSGAGKSTLVKALLERD 29 (205)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 34589999999999999999999874
No 345
>TIGR00073 hypB hydrogenase accessory protein HypB. HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.
Probab=97.02 E-value=0.0005 Score=55.05 Aligned_cols=31 Identities=16% Similarity=0.342 Sum_probs=25.7
Q ss_pred cCCCCCCCCeEEEEecCCCcHHHHHHHHhhc
Q 029512 85 SSFPAPDLPEIAFAGRSNVGKSSMLNALTRQ 115 (192)
Q Consensus 85 ~~~~~~~~~~i~lvG~~n~GKStlin~L~~~ 115 (192)
+.+...+.+.|+++|++|+|||||++.|+..
T Consensus 15 ~~~~~~~~~~i~~~G~~gsGKTTli~~l~~~ 45 (207)
T TIGR00073 15 ERLDKHGLVVLNFMSSPGSGKTTLIEKLIDN 45 (207)
T ss_pred HHhhhcCcEEEEEECCCCCCHHHHHHHHHHH
Confidence 3344456789999999999999999999865
No 346
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=97.00 E-value=0.00066 Score=53.44 Aligned_cols=26 Identities=23% Similarity=0.360 Sum_probs=23.0
Q ss_pred CCCeEEEEecCCCcHHHHHHHHhhcc
Q 029512 91 DLPEIAFAGRSNVGKSSMLNALTRQW 116 (192)
Q Consensus 91 ~~~~i~lvG~~n~GKStlin~L~~~~ 116 (192)
.+-.++|+|++|+|||||++.|+|..
T Consensus 24 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 49 (177)
T cd03222 24 EGEVIGIVGPNGTGKTTAVKILAGQL 49 (177)
T ss_pred CCCEEEEECCCCChHHHHHHHHHcCC
Confidence 35589999999999999999999863
No 347
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=96.99 E-value=0.00069 Score=54.29 Aligned_cols=26 Identities=35% Similarity=0.309 Sum_probs=23.1
Q ss_pred CCCeEEEEecCCCcHHHHHHHHhhcc
Q 029512 91 DLPEIAFAGRSNVGKSSMLNALTRQW 116 (192)
Q Consensus 91 ~~~~i~lvG~~n~GKStlin~L~~~~ 116 (192)
.+-.++|+|++|+|||||++.|+|..
T Consensus 29 ~G~~~~l~G~nGsGKSTLl~~i~Gl~ 54 (218)
T cd03255 29 KGEFVAIVGPSGSGKSTLLNILGGLD 54 (218)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCCc
Confidence 35589999999999999999999863
No 348
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=96.99 E-value=0.00068 Score=54.07 Aligned_cols=26 Identities=23% Similarity=0.275 Sum_probs=22.9
Q ss_pred CCCeEEEEecCCCcHHHHHHHHhhcc
Q 029512 91 DLPEIAFAGRSNVGKSSMLNALTRQW 116 (192)
Q Consensus 91 ~~~~i~lvG~~n~GKStlin~L~~~~ 116 (192)
.+-.++|+|++|+|||||++.|+|..
T Consensus 26 ~G~~~~l~G~nGsGKSTLl~~l~G~~ 51 (211)
T cd03225 26 KGEFVLIVGPNGSGKSTLLRLLNGLL 51 (211)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcCC
Confidence 34588999999999999999999863
No 349
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=96.99 E-value=0.0007 Score=54.26 Aligned_cols=26 Identities=23% Similarity=0.251 Sum_probs=23.1
Q ss_pred CCCeEEEEecCCCcHHHHHHHHhhcc
Q 029512 91 DLPEIAFAGRSNVGKSSMLNALTRQW 116 (192)
Q Consensus 91 ~~~~i~lvG~~n~GKStlin~L~~~~ 116 (192)
.+-.++|+|++|+|||||++.|+|..
T Consensus 28 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 53 (216)
T TIGR00960 28 KGEMVFLVGHSGAGKSTFLKLILGIE 53 (216)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 35589999999999999999999963
No 350
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=96.98 E-value=0.00052 Score=59.29 Aligned_cols=25 Identities=24% Similarity=0.267 Sum_probs=22.0
Q ss_pred CCeEEEEecCCCcHHHHHHHHhhcc
Q 029512 92 LPEIAFAGRSNVGKSSMLNALTRQW 116 (192)
Q Consensus 92 ~~~i~lvG~~n~GKStlin~L~~~~ 116 (192)
+--++|+|+||||||||++.|.|-.
T Consensus 29 Gef~vllGPSGcGKSTlLr~IAGLe 53 (338)
T COG3839 29 GEFVVLLGPSGCGKSTLLRMIAGLE 53 (338)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3478999999999999999999863
No 351
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.98 E-value=0.00071 Score=54.97 Aligned_cols=26 Identities=27% Similarity=0.305 Sum_probs=23.0
Q ss_pred CCCeEEEEecCCCcHHHHHHHHhhcc
Q 029512 91 DLPEIAFAGRSNVGKSSMLNALTRQW 116 (192)
Q Consensus 91 ~~~~i~lvG~~n~GKStlin~L~~~~ 116 (192)
.+-.++|+|++|+|||||++.|+|..
T Consensus 25 ~Ge~~~l~G~nGsGKSTLl~~l~G~~ 50 (235)
T cd03261 25 RGEILAIIGPSGSGKSTLLRLIVGLL 50 (235)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 34589999999999999999999863
No 352
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=96.97 E-value=0.0065 Score=54.35 Aligned_cols=24 Identities=25% Similarity=0.375 Sum_probs=20.8
Q ss_pred CCCeEEEEecCCCcHHHHHHHHhh
Q 029512 91 DLPEIAFAGRSNVGKSSMLNALTR 114 (192)
Q Consensus 91 ~~~~i~lvG~~n~GKStlin~L~~ 114 (192)
....|+++|.+|+||||++..|+.
T Consensus 94 ~p~vI~lvG~~GsGKTTtaakLA~ 117 (437)
T PRK00771 94 KPQTIMLVGLQGSGKTTTAAKLAR 117 (437)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHH
Confidence 345889999999999999998874
No 353
>KOG0462 consensus Elongation factor-type GTP-binding protein [Translation, ribosomal structure and biogenesis]
Probab=96.97 E-value=0.0019 Score=58.73 Aligned_cols=86 Identities=16% Similarity=0.191 Sum_probs=55.4
Q ss_pred CCCCCCCeEEEEecCCCcHHHHHHHHhhccCc-------------eeecCCCCceeEEE---EEeeC---CeEEEEECCC
Q 029512 87 FPAPDLPEIAFAGRSNVGKSSMLNALTRQWGV-------------VRTSDKPGLTQTIN---FFKLG---TKLCLVDLPG 147 (192)
Q Consensus 87 ~~~~~~~~i~lvG~~n~GKStlin~L~~~~~~-------------~~~~~~~g~T~~~~---~~~~~---~~~~lvDtPG 147 (192)
.|..+..++++|..-.=|||||...|+...+. -.+.-.-|.|...+ .++.+ ..+.+|||||
T Consensus 55 ~P~~~iRNfsIIAHVDHGKSTLaDrLLe~tg~i~~~~~q~q~LDkl~vERERGITIkaQtasify~~~~~ylLNLIDTPG 134 (650)
T KOG0462|consen 55 DPVENIRNFSIIAHVDHGKSTLADRLLELTGTIDNNIGQEQVLDKLQVERERGITIKAQTASIFYKDGQSYLLNLIDTPG 134 (650)
T ss_pred CchhhccceEEEEEecCCcchHHHHHHHHhCCCCCCCchhhhhhhhhhhhhcCcEEEeeeeEEEEEcCCceEEEeecCCC
Confidence 34456678899999999999999999865320 11112345665554 23333 6799999999
Q ss_pred CCC-CCChHHHHHHHHHHHhhhccCceeEEEEEEecCC
Q 029512 148 YGF-AYAKEEVKDAWEELVSISYRNFWSCTCFLIYIFY 184 (192)
Q Consensus 148 ~~~-~~~~~~~~~~~~~~~~l~~~~~~~~v~~vvD~s~ 184 (192)
-.+ ...-+ +. ...++++++|||++.
T Consensus 135 HvDFs~EVs---Rs---------laac~G~lLvVDA~q 160 (650)
T KOG0462|consen 135 HVDFSGEVS---RS---------LAACDGALLVVDASQ 160 (650)
T ss_pred cccccceeh---eh---------hhhcCceEEEEEcCc
Confidence 654 22111 11 124699999999975
No 354
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.97 E-value=0.00066 Score=54.20 Aligned_cols=23 Identities=17% Similarity=0.333 Sum_probs=21.5
Q ss_pred eEEEEecCCCcHHHHHHHHhhcc
Q 029512 94 EIAFAGRSNVGKSSMLNALTRQW 116 (192)
Q Consensus 94 ~i~lvG~~n~GKStlin~L~~~~ 116 (192)
.++|+|++|+|||||++.|+|..
T Consensus 27 ~~~i~G~nGsGKSTLl~~l~Gl~ 49 (211)
T cd03264 27 MYGLLGPNGAGKTTLMRILATLT 49 (211)
T ss_pred cEEEECCCCCCHHHHHHHHhCCC
Confidence 89999999999999999999863
No 355
>KOG0461 consensus Selenocysteine-specific elongation factor [Translation, ribosomal structure and biogenesis]
Probab=96.96 E-value=0.0045 Score=53.70 Aligned_cols=82 Identities=20% Similarity=0.297 Sum_probs=53.7
Q ss_pred CCCeEEEEecCCCcHHHHHHHHhhccCc-----eeecCCCCceeEEEEEee------------CCeEEEEECCCCCCCCC
Q 029512 91 DLPEIAFAGRSNVGKSSMLNALTRQWGV-----VRTSDKPGLTQTINFFKL------------GTKLCLVDLPGYGFAYA 153 (192)
Q Consensus 91 ~~~~i~lvG~~n~GKStlin~L~~~~~~-----~~~~~~~g~T~~~~~~~~------------~~~~~lvDtPG~~~~~~ 153 (192)
...++++.|.-.+||+||-.+|..-... ...+-.-|.|-|.-+... .-++.++|+||-
T Consensus 6 ~n~N~GiLGHvDSGKTtLarals~~~STaAFDk~pqS~eRgiTLDLGFS~~~v~~parLpq~e~lq~tlvDCPGH----- 80 (522)
T KOG0461|consen 6 SNLNLGILGHVDSGKTTLARALSELGSTAAFDKHPQSTERGITLDLGFSTMTVLSPARLPQGEQLQFTLVDCPGH----- 80 (522)
T ss_pred ceeeeeeEeeccCchHHHHHHHHhhccchhhccCCcccccceeEeecceeeecccccccCccccceeEEEeCCCc-----
Confidence 3468999999999999999999854211 112223355555543321 235799999993
Q ss_pred hHHHHHHHHHHHhhhccCceeEEEEEEecC
Q 029512 154 KEEVKDAWEELVSISYRNFWSCTCFLIYIF 183 (192)
Q Consensus 154 ~~~~~~~~~~~~~l~~~~~~~~v~~vvD~s 183 (192)
..+.+ .+ +....-+|+.++|||+.
T Consensus 81 -asLIR---ti--iggaqiiDlm~lviDv~ 104 (522)
T KOG0461|consen 81 -ASLIR---TI--IGGAQIIDLMILVIDVQ 104 (522)
T ss_pred -HHHHH---HH--HhhhheeeeeeEEEehh
Confidence 22222 22 56677789999999974
No 356
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.94 E-value=0.004 Score=54.84 Aligned_cols=24 Identities=29% Similarity=0.436 Sum_probs=21.3
Q ss_pred CCCeEEEEecCCCcHHHHHHHHhh
Q 029512 91 DLPEIAFAGRSNVGKSSMLNALTR 114 (192)
Q Consensus 91 ~~~~i~lvG~~n~GKStlin~L~~ 114 (192)
+...++++|++|+||||++..|..
T Consensus 205 ~~~ii~lvGptGvGKTTt~akLA~ 228 (407)
T PRK12726 205 NHRIISLIGQTGVGKTTTLVKLGW 228 (407)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 456889999999999999999985
No 357
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.94 E-value=0.0052 Score=54.17 Aligned_cols=23 Identities=22% Similarity=0.388 Sum_probs=20.7
Q ss_pred CCeEEEEecCCCcHHHHHHHHhh
Q 029512 92 LPEIAFAGRSNVGKSSMLNALTR 114 (192)
Q Consensus 92 ~~~i~lvG~~n~GKStlin~L~~ 114 (192)
...|+++|++|+||||++..|+.
T Consensus 174 ~~vi~lvGptGvGKTTT~aKLA~ 196 (388)
T PRK12723 174 KRVFILVGPTGVGKTTTIAKLAA 196 (388)
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 45899999999999999999985
No 358
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=96.93 E-value=0.00085 Score=54.16 Aligned_cols=25 Identities=36% Similarity=0.417 Sum_probs=22.7
Q ss_pred CCCeEEEEecCCCcHHHHHHHHhhc
Q 029512 91 DLPEIAFAGRSNVGKSSMLNALTRQ 115 (192)
Q Consensus 91 ~~~~i~lvG~~n~GKStlin~L~~~ 115 (192)
.+-.++|+|++|+|||||++.|+|.
T Consensus 25 ~Ge~~~i~G~nGsGKSTLl~~i~G~ 49 (227)
T cd03260 25 KGEITALIGPSGCGKSTLLRLLNRL 49 (227)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhh
Confidence 3558999999999999999999996
No 359
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=96.92 E-value=0.00087 Score=53.47 Aligned_cols=26 Identities=23% Similarity=0.267 Sum_probs=23.1
Q ss_pred CCCeEEEEecCCCcHHHHHHHHhhcc
Q 029512 91 DLPEIAFAGRSNVGKSSMLNALTRQW 116 (192)
Q Consensus 91 ~~~~i~lvG~~n~GKStlin~L~~~~ 116 (192)
.+-.++|+|++|+|||||++.|+|..
T Consensus 25 ~G~~~~l~G~nGsGKSTLl~~l~G~~ 50 (213)
T cd03262 25 KGEVVVIIGPSGSGKSTLLRCINLLE 50 (213)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 35589999999999999999999863
No 360
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=96.92 E-value=0.00087 Score=53.57 Aligned_cols=26 Identities=23% Similarity=0.291 Sum_probs=22.9
Q ss_pred CCCeEEEEecCCCcHHHHHHHHhhcc
Q 029512 91 DLPEIAFAGRSNVGKSSMLNALTRQW 116 (192)
Q Consensus 91 ~~~~i~lvG~~n~GKStlin~L~~~~ 116 (192)
.+-.++|+|++|+|||||++.|+|..
T Consensus 27 ~G~~~~l~G~nGsGKSTLl~~i~Gl~ 52 (214)
T TIGR02673 27 KGEFLFLTGPSGAGKTTLLKLLYGAL 52 (214)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 34589999999999999999999863
No 361
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=96.92 E-value=0.00093 Score=52.54 Aligned_cols=24 Identities=25% Similarity=0.181 Sum_probs=21.3
Q ss_pred CCCeEEEEecCCCcHHHHHHHHhh
Q 029512 91 DLPEIAFAGRSNVGKSSMLNALTR 114 (192)
Q Consensus 91 ~~~~i~lvG~~n~GKStlin~L~~ 114 (192)
.+-.++|+|++|+|||||+|.+++
T Consensus 20 ~G~~~~l~G~nG~GKSTLl~~il~ 43 (176)
T cd03238 20 LNVLVVVTGVSGSGKSTLVNEGLY 43 (176)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhh
Confidence 455899999999999999999974
No 362
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.91 E-value=0.0009 Score=53.80 Aligned_cols=25 Identities=20% Similarity=0.280 Sum_probs=22.5
Q ss_pred CCeEEEEecCCCcHHHHHHHHhhcc
Q 029512 92 LPEIAFAGRSNVGKSSMLNALTRQW 116 (192)
Q Consensus 92 ~~~i~lvG~~n~GKStlin~L~~~~ 116 (192)
+-.++|+|++|+|||||++.|+|..
T Consensus 26 Ge~~~i~G~nGsGKSTLl~~i~G~~ 50 (220)
T cd03265 26 GEIFGLLGPNGAGKTTTIKMLTTLL 50 (220)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 4588999999999999999999863
No 363
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=96.91 E-value=0.00088 Score=53.27 Aligned_cols=26 Identities=23% Similarity=0.340 Sum_probs=22.9
Q ss_pred CCCeEEEEecCCCcHHHHHHHHhhcc
Q 029512 91 DLPEIAFAGRSNVGKSSMLNALTRQW 116 (192)
Q Consensus 91 ~~~~i~lvG~~n~GKStlin~L~~~~ 116 (192)
.+-.++|+|++|+|||||++.|+|..
T Consensus 25 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 50 (205)
T cd03226 25 AGEIIALTGKNGAGKTTLAKILAGLI 50 (205)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 34589999999999999999999863
No 364
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=96.90 E-value=0.00093 Score=52.50 Aligned_cols=26 Identities=27% Similarity=0.309 Sum_probs=22.8
Q ss_pred CCCeEEEEecCCCcHHHHHHHHhhcc
Q 029512 91 DLPEIAFAGRSNVGKSSMLNALTRQW 116 (192)
Q Consensus 91 ~~~~i~lvG~~n~GKStlin~L~~~~ 116 (192)
.+-.++|+|++|+|||||++.|+|..
T Consensus 17 ~Ge~~~i~G~nGsGKSTLl~~i~G~~ 42 (190)
T TIGR01166 17 RGEVLALLGANGAGKSTLLLHLNGLL 42 (190)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 34589999999999999999999863
No 365
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=96.90 E-value=0.00092 Score=53.37 Aligned_cols=26 Identities=23% Similarity=0.298 Sum_probs=23.0
Q ss_pred CCCeEEEEecCCCcHHHHHHHHhhcc
Q 029512 91 DLPEIAFAGRSNVGKSSMLNALTRQW 116 (192)
Q Consensus 91 ~~~~i~lvG~~n~GKStlin~L~~~~ 116 (192)
.+-.++|+|++|+|||||++.|+|..
T Consensus 26 ~G~~~~i~G~nGsGKSTLl~~l~G~~ 51 (214)
T cd03292 26 AGEFVFLVGPSGAGKSTLLKLIYKEE 51 (214)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 34589999999999999999999963
No 366
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=96.90 E-value=0.00092 Score=53.69 Aligned_cols=26 Identities=31% Similarity=0.295 Sum_probs=23.1
Q ss_pred CCCeEEEEecCCCcHHHHHHHHhhcc
Q 029512 91 DLPEIAFAGRSNVGKSSMLNALTRQW 116 (192)
Q Consensus 91 ~~~~i~lvG~~n~GKStlin~L~~~~ 116 (192)
.+-.++|+|++|+|||||++.|+|..
T Consensus 30 ~G~~~~i~G~nGsGKSTLl~~i~G~~ 55 (221)
T TIGR02211 30 KGEIVAIVGSSGSGKSTLLHLLGGLD 55 (221)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 35589999999999999999999863
No 367
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=96.89 E-value=0.00094 Score=54.41 Aligned_cols=26 Identities=31% Similarity=0.379 Sum_probs=22.9
Q ss_pred CCCeEEEEecCCCcHHHHHHHHhhcc
Q 029512 91 DLPEIAFAGRSNVGKSSMLNALTRQW 116 (192)
Q Consensus 91 ~~~~i~lvG~~n~GKStlin~L~~~~ 116 (192)
.+-.++|+|++|+|||||++.|+|..
T Consensus 27 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 52 (243)
T TIGR02315 27 PGEFVAIIGPSGAGKSTLLRCINRLV 52 (243)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCc
Confidence 34589999999999999999999863
No 368
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.88 E-value=0.00097 Score=53.31 Aligned_cols=26 Identities=23% Similarity=0.258 Sum_probs=22.9
Q ss_pred CCCeEEEEecCCCcHHHHHHHHhhcc
Q 029512 91 DLPEIAFAGRSNVGKSSMLNALTRQW 116 (192)
Q Consensus 91 ~~~~i~lvG~~n~GKStlin~L~~~~ 116 (192)
.+-.++|+|++|+|||||++.|+|..
T Consensus 25 ~Ge~~~i~G~nGsGKSTLl~~l~G~~ 50 (213)
T cd03259 25 PGEFLALLGPSGCGKTTLLRLIAGLE 50 (213)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 34589999999999999999999863
No 369
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=96.88 E-value=0.00093 Score=53.01 Aligned_cols=25 Identities=32% Similarity=0.274 Sum_probs=22.6
Q ss_pred CCeEEEEecCCCcHHHHHHHHhhcc
Q 029512 92 LPEIAFAGRSNVGKSSMLNALTRQW 116 (192)
Q Consensus 92 ~~~i~lvG~~n~GKStlin~L~~~~ 116 (192)
+-.++|+|++|+|||||++.|+|..
T Consensus 24 Ge~~~i~G~nGsGKSTLl~~l~G~~ 48 (206)
T TIGR03608 24 GKMYAIIGESGSGKSTLLNIIGLLE 48 (206)
T ss_pred CcEEEEECCCCCCHHHHHHHHhcCC
Confidence 4589999999999999999999863
No 370
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.87 E-value=0.00099 Score=53.13 Aligned_cols=26 Identities=12% Similarity=0.178 Sum_probs=22.9
Q ss_pred CCCeEEEEecCCCcHHHHHHHHhhcc
Q 029512 91 DLPEIAFAGRSNVGKSSMLNALTRQW 116 (192)
Q Consensus 91 ~~~~i~lvG~~n~GKStlin~L~~~~ 116 (192)
.+-.++|+|++|+|||||++.|+|..
T Consensus 25 ~G~~~~i~G~nGsGKSTLl~~l~G~~ 50 (210)
T cd03269 25 KGEIFGLLGPNGAGKTTTIRMILGII 50 (210)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 34588999999999999999999963
No 371
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=96.86 E-value=0.0053 Score=51.53 Aligned_cols=25 Identities=32% Similarity=0.571 Sum_probs=22.1
Q ss_pred CCCeEEEEecCCCcHHHHHHHHhhc
Q 029512 91 DLPEIAFAGRSNVGKSSMLNALTRQ 115 (192)
Q Consensus 91 ~~~~i~lvG~~n~GKStlin~L~~~ 115 (192)
+...++++|++|+||||++..|++.
T Consensus 74 ~~~~i~~~G~~g~GKTtl~~~l~~~ 98 (270)
T PRK06731 74 EVQTIALIGPTGVGKTTTLAKMAWQ 98 (270)
T ss_pred CCCEEEEECCCCCcHHHHHHHHHHH
Confidence 4579999999999999999999764
No 372
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.85 E-value=0.00097 Score=53.62 Aligned_cols=25 Identities=28% Similarity=0.314 Sum_probs=22.5
Q ss_pred CCeEEEEecCCCcHHHHHHHHhhcc
Q 029512 92 LPEIAFAGRSNVGKSSMLNALTRQW 116 (192)
Q Consensus 92 ~~~i~lvG~~n~GKStlin~L~~~~ 116 (192)
+-.++|+|++|+|||||++.|+|..
T Consensus 30 G~~~~i~G~nGsGKSTLl~~l~Gl~ 54 (220)
T cd03293 30 GEFVALVGPSGCGKSTLLRIIAGLE 54 (220)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCC
Confidence 4589999999999999999999863
No 373
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=96.85 E-value=0.0011 Score=50.12 Aligned_cols=26 Identities=27% Similarity=0.478 Sum_probs=22.9
Q ss_pred CCCeEEEEecCCCcHHHHHHHHhhcc
Q 029512 91 DLPEIAFAGRSNVGKSSMLNALTRQW 116 (192)
Q Consensus 91 ~~~~i~lvG~~n~GKStlin~L~~~~ 116 (192)
.+-.++++|++|+|||||++.|.|..
T Consensus 25 ~Ge~~~i~G~nGsGKStLl~~l~G~~ 50 (144)
T cd03221 25 PGDRIGLVGRNGAGKSTLLKLIAGEL 50 (144)
T ss_pred CCCEEEEECCCCCCHHHHHHHHcCCC
Confidence 34588999999999999999999964
No 374
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=96.85 E-value=0.00096 Score=53.57 Aligned_cols=26 Identities=23% Similarity=0.437 Sum_probs=22.9
Q ss_pred CCCeEEEEecCCCcHHHHHHHHhhcc
Q 029512 91 DLPEIAFAGRSNVGKSSMLNALTRQW 116 (192)
Q Consensus 91 ~~~~i~lvG~~n~GKStlin~L~~~~ 116 (192)
.+-.++|+|++|+|||||++.|.|..
T Consensus 25 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 50 (222)
T cd03224 25 EGEIVALLGRNGAGKTTLLKTIMGLL 50 (222)
T ss_pred CCeEEEEECCCCCCHHHHHHHHhCCC
Confidence 34589999999999999999999863
No 375
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=96.85 E-value=0.0011 Score=51.10 Aligned_cols=26 Identities=23% Similarity=0.365 Sum_probs=23.1
Q ss_pred CCCeEEEEecCCCcHHHHHHHHhhcc
Q 029512 91 DLPEIAFAGRSNVGKSSMLNALTRQW 116 (192)
Q Consensus 91 ~~~~i~lvG~~n~GKStlin~L~~~~ 116 (192)
++-.++|+|++|+|||||++.|.|..
T Consensus 25 ~Ge~~~l~G~nGsGKSTLl~~i~G~~ 50 (163)
T cd03216 25 RGEVHALLGENGAGKSTLMKILSGLY 50 (163)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 45589999999999999999999863
No 376
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=96.84 E-value=0.0011 Score=53.26 Aligned_cols=25 Identities=24% Similarity=0.349 Sum_probs=22.5
Q ss_pred CCeEEEEecCCCcHHHHHHHHhhcc
Q 029512 92 LPEIAFAGRSNVGKSSMLNALTRQW 116 (192)
Q Consensus 92 ~~~i~lvG~~n~GKStlin~L~~~~ 116 (192)
+-.++|+|++|+|||||++.|+|..
T Consensus 28 Ge~~~i~G~nGsGKSTLl~~l~Gl~ 52 (220)
T cd03263 28 GEIFGLLGHNGAGKTTTLKMLTGEL 52 (220)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCC
Confidence 4489999999999999999999963
No 377
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=96.84 E-value=0.0011 Score=53.48 Aligned_cols=26 Identities=23% Similarity=0.328 Sum_probs=23.1
Q ss_pred CCCeEEEEecCCCcHHHHHHHHhhcc
Q 029512 91 DLPEIAFAGRSNVGKSSMLNALTRQW 116 (192)
Q Consensus 91 ~~~~i~lvG~~n~GKStlin~L~~~~ 116 (192)
.+-.++|+|++|+|||||++.|+|..
T Consensus 30 ~Ge~~~i~G~nGsGKSTLl~~l~G~~ 55 (228)
T cd03257 30 KGETLGLVGESGSGKSTLARAILGLL 55 (228)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 35589999999999999999999863
No 378
>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional
Probab=96.84 E-value=0.0011 Score=53.40 Aligned_cols=25 Identities=16% Similarity=0.150 Sum_probs=22.5
Q ss_pred CCeEEEEecCCCcHHHHHHHHhhcc
Q 029512 92 LPEIAFAGRSNVGKSSMLNALTRQW 116 (192)
Q Consensus 92 ~~~i~lvG~~n~GKStlin~L~~~~ 116 (192)
+-.++|+|++|+|||||++.|+|-.
T Consensus 13 Ge~~~l~G~NGsGKSTLlk~i~Gl~ 37 (213)
T PRK15177 13 HEHIGILAAPGSGKTTLTRLLCGLD 37 (213)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCc
Confidence 4589999999999999999999863
No 379
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.83 E-value=0.0011 Score=53.70 Aligned_cols=26 Identities=23% Similarity=0.321 Sum_probs=23.1
Q ss_pred CCCeEEEEecCCCcHHHHHHHHhhcc
Q 029512 91 DLPEIAFAGRSNVGKSSMLNALTRQW 116 (192)
Q Consensus 91 ~~~~i~lvG~~n~GKStlin~L~~~~ 116 (192)
.+-.++|+|++|+|||||++.|+|..
T Consensus 30 ~Ge~~~l~G~nGsGKSTLl~~l~G~~ 55 (233)
T cd03258 30 KGEIFGIIGRSGAGKSTLIRCINGLE 55 (233)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 35589999999999999999999864
No 380
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=96.82 E-value=0.0012 Score=50.03 Aligned_cols=23 Identities=26% Similarity=0.596 Sum_probs=20.1
Q ss_pred CeEEEEecCCCcHHHHHHHHhhc
Q 029512 93 PEIAFAGRSNVGKSSMLNALTRQ 115 (192)
Q Consensus 93 ~~i~lvG~~n~GKStlin~L~~~ 115 (192)
|.|+++|+.|+|||||+..|.+.
T Consensus 1 pvv~VvG~~~sGKTTl~~~Li~~ 23 (140)
T PF03205_consen 1 PVVQVVGPKNSGKTTLIRKLINE 23 (140)
T ss_dssp -EEEEEESTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHH
Confidence 57999999999999999999864
No 381
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=96.81 E-value=0.0012 Score=53.48 Aligned_cols=26 Identities=12% Similarity=0.188 Sum_probs=22.9
Q ss_pred CCCeEEEEecCCCcHHHHHHHHhhcc
Q 029512 91 DLPEIAFAGRSNVGKSSMLNALTRQW 116 (192)
Q Consensus 91 ~~~~i~lvG~~n~GKStlin~L~~~~ 116 (192)
.+-.++|+|++|+|||||++.|+|..
T Consensus 25 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 50 (232)
T cd03218 25 QGEIVGLLGPNGAGKTTTFYMIVGLV 50 (232)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 34589999999999999999999863
No 382
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=96.81 E-value=0.0011 Score=52.93 Aligned_cols=26 Identities=27% Similarity=0.330 Sum_probs=22.9
Q ss_pred CCCeEEEEecCCCcHHHHHHHHhhcc
Q 029512 91 DLPEIAFAGRSNVGKSSMLNALTRQW 116 (192)
Q Consensus 91 ~~~~i~lvG~~n~GKStlin~L~~~~ 116 (192)
.+-.++|+|++|+|||||++.|.|..
T Consensus 24 ~Ge~~~l~G~nGsGKSTLl~~l~G~~ 49 (213)
T cd03235 24 PGEFLAIVGPNGAGKSTLLKAILGLL 49 (213)
T ss_pred CCCEEEEECCCCCCHHHHHHHHcCCC
Confidence 34589999999999999999999863
No 383
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.80 E-value=0.0013 Score=51.34 Aligned_cols=25 Identities=28% Similarity=0.369 Sum_probs=22.4
Q ss_pred CCCeEEEEecCCCcHHHHHHHHhhc
Q 029512 91 DLPEIAFAGRSNVGKSSMLNALTRQ 115 (192)
Q Consensus 91 ~~~~i~lvG~~n~GKStlin~L~~~ 115 (192)
.+-.++|+|++|+|||||++.|+|.
T Consensus 25 ~G~~~~i~G~nGsGKSTLl~~l~G~ 49 (178)
T cd03229 25 AGEIVALLGPSGSGKSTLLRCIAGL 49 (178)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3458899999999999999999986
No 384
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.80 E-value=0.0032 Score=57.54 Aligned_cols=24 Identities=25% Similarity=0.396 Sum_probs=21.4
Q ss_pred CCCeEEEEecCCCcHHHHHHHHhh
Q 029512 91 DLPEIAFAGRSNVGKSSMLNALTR 114 (192)
Q Consensus 91 ~~~~i~lvG~~n~GKStlin~L~~ 114 (192)
....++|+|++|+||||++..|..
T Consensus 349 ~G~vIaLVGPtGvGKTTtaakLAa 372 (559)
T PRK12727 349 RGGVIALVGPTGAGKTTTIAKLAQ 372 (559)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHH
Confidence 356899999999999999999985
No 385
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=96.80 E-value=0.0012 Score=52.62 Aligned_cols=26 Identities=23% Similarity=0.265 Sum_probs=23.0
Q ss_pred CCCeEEEEecCCCcHHHHHHHHhhcc
Q 029512 91 DLPEIAFAGRSNVGKSSMLNALTRQW 116 (192)
Q Consensus 91 ~~~~i~lvG~~n~GKStlin~L~~~~ 116 (192)
.+-.++|+|++|+|||||++.|+|..
T Consensus 25 ~Ge~~~l~G~nGsGKSTLl~~l~G~~ 50 (213)
T cd03301 25 DGEFVVLLGPSGCGKTTTLRMIAGLE 50 (213)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 34589999999999999999999963
No 386
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=96.80 E-value=0.0012 Score=52.10 Aligned_cols=26 Identities=23% Similarity=0.258 Sum_probs=23.0
Q ss_pred CCCeEEEEecCCCcHHHHHHHHhhcc
Q 029512 91 DLPEIAFAGRSNVGKSSMLNALTRQW 116 (192)
Q Consensus 91 ~~~~i~lvG~~n~GKStlin~L~~~~ 116 (192)
.+-.++|+|++|+|||||++.|+|..
T Consensus 25 ~Ge~~~l~G~nGsGKSTLl~~l~G~~ 50 (195)
T PRK13541 25 PSAITYIKGANGCGKSSLLRMIAGIM 50 (195)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcCC
Confidence 34589999999999999999999963
No 387
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.80 E-value=0.0012 Score=53.62 Aligned_cols=26 Identities=31% Similarity=0.335 Sum_probs=22.9
Q ss_pred CCCeEEEEecCCCcHHHHHHHHhhcc
Q 029512 91 DLPEIAFAGRSNVGKSSMLNALTRQW 116 (192)
Q Consensus 91 ~~~~i~lvG~~n~GKStlin~L~~~~ 116 (192)
.+-.++|+|++|+|||||++.|+|..
T Consensus 26 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 51 (241)
T cd03256 26 PGEFVALIGPSGAGKSTLLRCLNGLV 51 (241)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCc
Confidence 34589999999999999999999863
No 388
>PRK14242 phosphate transporter ATP-binding protein; Provisional
Probab=96.79 E-value=0.0012 Score=54.24 Aligned_cols=25 Identities=36% Similarity=0.470 Sum_probs=22.4
Q ss_pred CCCeEEEEecCCCcHHHHHHHHhhc
Q 029512 91 DLPEIAFAGRSNVGKSSMLNALTRQ 115 (192)
Q Consensus 91 ~~~~i~lvG~~n~GKStlin~L~~~ 115 (192)
.+-.++|+|++|+|||||++.|+|.
T Consensus 31 ~Ge~~~i~G~nGsGKSTLl~~l~Gl 55 (253)
T PRK14242 31 QNQVTALIGPSGCGKSTFLRCLNRM 55 (253)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhh
Confidence 3458999999999999999999985
No 389
>TIGR01978 sufC FeS assembly ATPase SufC. SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.
Probab=96.79 E-value=0.0012 Score=53.70 Aligned_cols=25 Identities=20% Similarity=0.250 Sum_probs=22.6
Q ss_pred CCCeEEEEecCCCcHHHHHHHHhhc
Q 029512 91 DLPEIAFAGRSNVGKSSMLNALTRQ 115 (192)
Q Consensus 91 ~~~~i~lvG~~n~GKStlin~L~~~ 115 (192)
.+-.++|+|++|+|||||++.|+|.
T Consensus 25 ~Ge~~~i~G~nGsGKSTLl~~l~Gl 49 (243)
T TIGR01978 25 KGEIHAIMGPNGSGKSTLSKTIAGH 49 (243)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3458999999999999999999996
No 390
>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA. This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.
Probab=96.79 E-value=0.0013 Score=52.11 Aligned_cols=26 Identities=19% Similarity=0.368 Sum_probs=23.1
Q ss_pred CCCeEEEEecCCCcHHHHHHHHhhcc
Q 029512 91 DLPEIAFAGRSNVGKSSMLNALTRQW 116 (192)
Q Consensus 91 ~~~~i~lvG~~n~GKStlin~L~~~~ 116 (192)
.+-.++|+|++|+|||||++.|+|..
T Consensus 25 ~Ge~~~i~G~nGsGKSTLl~~l~G~~ 50 (198)
T TIGR01189 25 AGEALQVTGPNGIGKTTLLRILAGLL 50 (198)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 35589999999999999999999964
No 391
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=96.79 E-value=0.0013 Score=51.82 Aligned_cols=24 Identities=33% Similarity=0.484 Sum_probs=21.8
Q ss_pred CCeEEEEecCCCcHHHHHHHHhhc
Q 029512 92 LPEIAFAGRSNVGKSSMLNALTRQ 115 (192)
Q Consensus 92 ~~~i~lvG~~n~GKStlin~L~~~ 115 (192)
...++++|++|+|||||+++|++.
T Consensus 25 g~~i~I~G~tGSGKTTll~aL~~~ 48 (186)
T cd01130 25 RKNILISGGTGSGKTTLLNALLAF 48 (186)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhh
Confidence 348999999999999999999985
No 392
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=96.79 E-value=0.0013 Score=52.17 Aligned_cols=26 Identities=15% Similarity=0.279 Sum_probs=23.2
Q ss_pred CCCeEEEEecCCCcHHHHHHHHhhcc
Q 029512 91 DLPEIAFAGRSNVGKSSMLNALTRQW 116 (192)
Q Consensus 91 ~~~~i~lvG~~n~GKStlin~L~~~~ 116 (192)
++-.++|+|++|+|||||++.|+|..
T Consensus 26 ~Ge~~~l~G~nGsGKSTLl~~i~G~~ 51 (200)
T PRK13540 26 AGGLLHLKGSNGAGKTTLLKLIAGLL 51 (200)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 45589999999999999999999864
No 393
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=96.78 E-value=0.0013 Score=54.48 Aligned_cols=26 Identities=23% Similarity=0.288 Sum_probs=23.0
Q ss_pred CCCeEEEEecCCCcHHHHHHHHhhcc
Q 029512 91 DLPEIAFAGRSNVGKSSMLNALTRQW 116 (192)
Q Consensus 91 ~~~~i~lvG~~n~GKStlin~L~~~~ 116 (192)
.+-.++|+|++|+|||||++.|+|..
T Consensus 26 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 51 (255)
T PRK11248 26 SGELLVVLGPSGCGKTTLLNLIAGFV 51 (255)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 34589999999999999999999863
No 394
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.78 E-value=0.0013 Score=53.12 Aligned_cols=26 Identities=27% Similarity=0.503 Sum_probs=22.8
Q ss_pred CCCeEEEEecCCCcHHHHHHHHhhcc
Q 029512 91 DLPEIAFAGRSNVGKSSMLNALTRQW 116 (192)
Q Consensus 91 ~~~~i~lvG~~n~GKStlin~L~~~~ 116 (192)
.+-.++|+|++|+|||||++.|+|..
T Consensus 28 ~G~~~~i~G~nGsGKSTLl~~l~G~~ 53 (229)
T cd03254 28 PGETVAIVGPTGAGKTTLINLLMRFY 53 (229)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCc
Confidence 34579999999999999999999863
No 395
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=96.78 E-value=0.0013 Score=52.37 Aligned_cols=26 Identities=15% Similarity=0.229 Sum_probs=22.9
Q ss_pred CCCeEEEEecCCCcHHHHHHHHhhcc
Q 029512 91 DLPEIAFAGRSNVGKSSMLNALTRQW 116 (192)
Q Consensus 91 ~~~~i~lvG~~n~GKStlin~L~~~~ 116 (192)
.+-.++|+|++|+|||||++.|+|..
T Consensus 25 ~G~~~~i~G~nGsGKSTLl~~l~Gl~ 50 (208)
T cd03268 25 KGEIYGFLGPNGAGKTTTMKIILGLI 50 (208)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCc
Confidence 34588999999999999999999863
No 396
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=96.78 E-value=0.0011 Score=52.98 Aligned_cols=25 Identities=24% Similarity=0.283 Sum_probs=22.4
Q ss_pred CCCeEEEEecCCCcHHHHHHHHhhc
Q 029512 91 DLPEIAFAGRSNVGKSSMLNALTRQ 115 (192)
Q Consensus 91 ~~~~i~lvG~~n~GKStlin~L~~~ 115 (192)
.+..|+|+|++|+|||||.+.|.+.
T Consensus 5 ~g~vi~I~G~sGsGKSTl~~~l~~~ 29 (207)
T TIGR00235 5 KGIIIGIGGGSGSGKTTVARKIYEQ 29 (207)
T ss_pred CeEEEEEECCCCCCHHHHHHHHHHH
Confidence 3458999999999999999999975
No 397
>PRK11124 artP arginine transporter ATP-binding subunit; Provisional
Probab=96.78 E-value=0.0013 Score=53.68 Aligned_cols=26 Identities=31% Similarity=0.332 Sum_probs=23.1
Q ss_pred CCCeEEEEecCCCcHHHHHHHHhhcc
Q 029512 91 DLPEIAFAGRSNVGKSSMLNALTRQW 116 (192)
Q Consensus 91 ~~~~i~lvG~~n~GKStlin~L~~~~ 116 (192)
.+-.++|+|++|+|||||++.|+|..
T Consensus 27 ~Ge~~~i~G~nGsGKSTLl~~l~G~~ 52 (242)
T PRK11124 27 QGETLVLLGPSGAGKSSLLRVLNLLE 52 (242)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 34589999999999999999999864
No 398
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=96.78 E-value=0.0013 Score=52.69 Aligned_cols=25 Identities=20% Similarity=0.243 Sum_probs=22.5
Q ss_pred CCeEEEEecCCCcHHHHHHHHhhcc
Q 029512 92 LPEIAFAGRSNVGKSSMLNALTRQW 116 (192)
Q Consensus 92 ~~~i~lvG~~n~GKStlin~L~~~~ 116 (192)
+-.++|+|++|+|||||++.|+|-.
T Consensus 31 Ge~~~i~G~nGsGKSTLl~~l~Gl~ 55 (218)
T cd03266 31 GEVTGLLGPNGAGKTTTLRMLAGLL 55 (218)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCc
Confidence 4588999999999999999999863
No 399
>PRK10908 cell division protein FtsE; Provisional
Probab=96.77 E-value=0.0013 Score=52.90 Aligned_cols=26 Identities=23% Similarity=0.217 Sum_probs=23.1
Q ss_pred CCCeEEEEecCCCcHHHHHHHHhhcc
Q 029512 91 DLPEIAFAGRSNVGKSSMLNALTRQW 116 (192)
Q Consensus 91 ~~~~i~lvG~~n~GKStlin~L~~~~ 116 (192)
.+-.++|+|++|+|||||++.|+|..
T Consensus 27 ~Ge~~~i~G~nGsGKSTLl~~l~G~~ 52 (222)
T PRK10908 27 PGEMAFLTGHSGAGKSTLLKLICGIE 52 (222)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 45589999999999999999999864
No 400
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=96.77 E-value=0.0012 Score=53.50 Aligned_cols=26 Identities=15% Similarity=0.239 Sum_probs=22.8
Q ss_pred CCCeEEEEecCCCcHHHHHHHHhhcc
Q 029512 91 DLPEIAFAGRSNVGKSSMLNALTRQW 116 (192)
Q Consensus 91 ~~~~i~lvG~~n~GKStlin~L~~~~ 116 (192)
.+-.++|+|++|+|||||++.|+|..
T Consensus 25 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 50 (236)
T cd03219 25 PGEIHGLIGPNGAGKTTLFNLISGFL 50 (236)
T ss_pred CCcEEEEECCCCCCHHHHHHHHcCCC
Confidence 34589999999999999999999863
No 401
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=96.76 E-value=0.0012 Score=51.96 Aligned_cols=23 Identities=39% Similarity=0.437 Sum_probs=21.0
Q ss_pred eEEEEecCCCcHHHHHHHHhhcc
Q 029512 94 EIAFAGRSNVGKSSMLNALTRQW 116 (192)
Q Consensus 94 ~i~lvG~~n~GKStlin~L~~~~ 116 (192)
.++|+|++|+|||||++.|.+..
T Consensus 4 ~i~l~G~sGsGKsTl~~~l~~~~ 26 (186)
T PRK10078 4 LIWLMGPSGSGKDSLLAALRQRE 26 (186)
T ss_pred EEEEECCCCCCHHHHHHHHhccC
Confidence 68999999999999999998763
No 402
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=96.76 E-value=0.0014 Score=53.29 Aligned_cols=25 Identities=32% Similarity=0.302 Sum_probs=22.5
Q ss_pred CCeEEEEecCCCcHHHHHHHHhhcc
Q 029512 92 LPEIAFAGRSNVGKSSMLNALTRQW 116 (192)
Q Consensus 92 ~~~i~lvG~~n~GKStlin~L~~~~ 116 (192)
+-.++|+|++|+|||||++.|+|..
T Consensus 35 Ge~~~l~G~nGsGKSTLl~~l~Gl~ 59 (233)
T PRK11629 35 GEMMAIVGSSGSGKSTLLHLLGGLD 59 (233)
T ss_pred CcEEEEECCCCCCHHHHHHHHhcCC
Confidence 4489999999999999999999863
No 403
>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Probab=96.76 E-value=0.0014 Score=53.75 Aligned_cols=26 Identities=23% Similarity=0.272 Sum_probs=22.9
Q ss_pred CCCeEEEEecCCCcHHHHHHHHhhcc
Q 029512 91 DLPEIAFAGRSNVGKSSMLNALTRQW 116 (192)
Q Consensus 91 ~~~~i~lvG~~n~GKStlin~L~~~~ 116 (192)
.+-.++|+|++|+|||||++.|+|..
T Consensus 28 ~Ge~~~i~G~nGsGKSTLl~~l~G~~ 53 (250)
T PRK11264 28 PGEVVAIIGPSGSGKTTLLRCINLLE 53 (250)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 34589999999999999999999863
No 404
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=96.75 E-value=0.0057 Score=44.29 Aligned_cols=22 Identities=27% Similarity=0.475 Sum_probs=20.0
Q ss_pred EEEEecCCCcHHHHHHHHhhcc
Q 029512 95 IAFAGRSNVGKSSMLNALTRQW 116 (192)
Q Consensus 95 i~lvG~~n~GKStlin~L~~~~ 116 (192)
|++.|++|+|||++++.++...
T Consensus 1 ill~G~~G~GKT~l~~~la~~l 22 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYL 22 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHT
T ss_pred CEEECcCCCCeeHHHHHHHhhc
Confidence 6799999999999999999863
No 405
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=96.75 E-value=0.0014 Score=51.33 Aligned_cols=26 Identities=19% Similarity=0.169 Sum_probs=22.8
Q ss_pred CCCeEEEEecCCCcHHHHHHHHhhcc
Q 029512 91 DLPEIAFAGRSNVGKSSMLNALTRQW 116 (192)
Q Consensus 91 ~~~~i~lvG~~n~GKStlin~L~~~~ 116 (192)
.+-.++|+|++|+|||||++.|+|..
T Consensus 25 ~G~~~~i~G~nGsGKSTLl~~l~G~~ 50 (182)
T cd03215 25 AGEIVGIAGLVGNGQTELAEALFGLR 50 (182)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 34589999999999999999999863
No 406
>PLN02772 guanylate kinase
Probab=96.75 E-value=0.0014 Score=57.58 Aligned_cols=43 Identities=19% Similarity=0.230 Sum_probs=30.5
Q ss_pred CCCeEEEEecCCCcHHHHHHHHhhccCceeecCCCCceeEEEE
Q 029512 91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINF 133 (192)
Q Consensus 91 ~~~~i~lvG~~n~GKStlin~L~~~~~~~~~~~~~g~T~~~~~ 133 (192)
....++|+|++||||+||++.|............+.|||.+..
T Consensus 134 ~~k~iVlsGPSGvGKsTL~~~L~~~~p~~~~~~vshTTR~pR~ 176 (398)
T PLN02772 134 AEKPIVISGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPRE 176 (398)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhhhccccccccccccCCCCcc
Confidence 4458999999999999999999875321222244557776654
No 407
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=96.75 E-value=0.0014 Score=52.93 Aligned_cols=26 Identities=35% Similarity=0.346 Sum_probs=23.1
Q ss_pred CCCeEEEEecCCCcHHHHHHHHhhcc
Q 029512 91 DLPEIAFAGRSNVGKSSMLNALTRQW 116 (192)
Q Consensus 91 ~~~~i~lvG~~n~GKStlin~L~~~~ 116 (192)
.+-.++|+|++|+|||||++.|+|..
T Consensus 35 ~Ge~~~i~G~nGsGKSTLl~~i~Gl~ 60 (228)
T PRK10584 35 RGETIALIGESGSGKSTLLAILAGLD 60 (228)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHcCC
Confidence 34589999999999999999999973
No 408
>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional
Probab=96.75 E-value=0.0014 Score=53.79 Aligned_cols=26 Identities=35% Similarity=0.437 Sum_probs=23.0
Q ss_pred CCCeEEEEecCCCcHHHHHHHHhhcc
Q 029512 91 DLPEIAFAGRSNVGKSSMLNALTRQW 116 (192)
Q Consensus 91 ~~~~i~lvG~~n~GKStlin~L~~~~ 116 (192)
.+-.++|+|++|+|||||++.|+|..
T Consensus 28 ~Ge~~~i~G~nGsGKSTLl~~i~G~~ 53 (250)
T PRK14247 28 DNTITALMGPSGSGKSTLLRVFNRLI 53 (250)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhccC
Confidence 34589999999999999999999963
No 409
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=96.75 E-value=0.0012 Score=59.92 Aligned_cols=26 Identities=35% Similarity=0.354 Sum_probs=23.6
Q ss_pred CCCeEEEEecCCCcHHHHHHHHhhcc
Q 029512 91 DLPEIAFAGRSNVGKSSMLNALTRQW 116 (192)
Q Consensus 91 ~~~~i~lvG~~n~GKStlin~L~~~~ 116 (192)
++-+++++|++|+|||||+|.|+|-.
T Consensus 360 ~G~~vaIvG~SGsGKSTLl~lL~g~~ 385 (529)
T TIGR02868 360 PGERVAILGPSGSGKSTLLMLLTGLL 385 (529)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 56699999999999999999999864
No 410
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.75 E-value=0.0014 Score=53.43 Aligned_cols=26 Identities=23% Similarity=0.279 Sum_probs=22.9
Q ss_pred CCCeEEEEecCCCcHHHHHHHHhhcc
Q 029512 91 DLPEIAFAGRSNVGKSSMLNALTRQW 116 (192)
Q Consensus 91 ~~~~i~lvG~~n~GKStlin~L~~~~ 116 (192)
.+-.++|+|++|+|||||++.|+|..
T Consensus 27 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 52 (239)
T cd03296 27 SGELVALLGPSGSGKTTLLRLIAGLE 52 (239)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 34589999999999999999999863
No 411
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=96.74 E-value=0.0015 Score=52.26 Aligned_cols=26 Identities=15% Similarity=0.323 Sum_probs=23.1
Q ss_pred CCCeEEEEecCCCcHHHHHHHHhhcc
Q 029512 91 DLPEIAFAGRSNVGKSSMLNALTRQW 116 (192)
Q Consensus 91 ~~~~i~lvG~~n~GKStlin~L~~~~ 116 (192)
.+-.++|+|++|+|||||++.|+|..
T Consensus 27 ~Ge~~~i~G~nGsGKSTLl~~l~G~~ 52 (207)
T PRK13539 27 AGEALVLTGPNGSGKTTLLRLIAGLL 52 (207)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 35589999999999999999999973
No 412
>COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=96.74 E-value=0.0012 Score=60.10 Aligned_cols=27 Identities=33% Similarity=0.318 Sum_probs=23.8
Q ss_pred CCCCeEEEEecCCCcHHHHHHHHhhcc
Q 029512 90 PDLPEIAFAGRSNVGKSSMLNALTRQW 116 (192)
Q Consensus 90 ~~~~~i~lvG~~n~GKStlin~L~~~~ 116 (192)
..+..+++||+||+|||||+|.|.|-.
T Consensus 345 ~~g~~talvG~SGaGKSTLl~lL~G~~ 371 (559)
T COG4988 345 KAGQLTALVGASGAGKSTLLNLLLGFL 371 (559)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCcC
Confidence 356699999999999999999999863
No 413
>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Probab=96.74 E-value=0.0015 Score=52.02 Aligned_cols=26 Identities=19% Similarity=0.282 Sum_probs=23.2
Q ss_pred CCCeEEEEecCCCcHHHHHHHHhhcc
Q 029512 91 DLPEIAFAGRSNVGKSSMLNALTRQW 116 (192)
Q Consensus 91 ~~~~i~lvG~~n~GKStlin~L~~~~ 116 (192)
.+-.++|+|++|+|||||++.|+|..
T Consensus 25 ~Ge~~~i~G~nGsGKSTLl~~l~G~~ 50 (201)
T cd03231 25 AGEALQVTGPNGSGKTTLLRILAGLS 50 (201)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 35589999999999999999999864
No 414
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=96.74 E-value=0.0014 Score=54.59 Aligned_cols=25 Identities=24% Similarity=0.298 Sum_probs=22.2
Q ss_pred CCCeEEEEecCCCcHHHHHHHHhhc
Q 029512 91 DLPEIAFAGRSNVGKSSMLNALTRQ 115 (192)
Q Consensus 91 ~~~~i~lvG~~n~GKStlin~L~~~ 115 (192)
.+-.++|+|++|||||||+++|.|-
T Consensus 27 ~G~i~~iiGpNG~GKSTLLk~l~g~ 51 (258)
T COG1120 27 KGEITGILGPNGSGKSTLLKCLAGL 51 (258)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcc
Confidence 3558899999999999999999984
No 415
>cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=96.73 E-value=0.0015 Score=54.25 Aligned_cols=26 Identities=23% Similarity=0.423 Sum_probs=23.3
Q ss_pred CCCeEEEEecCCCcHHHHHHHHhhcc
Q 029512 91 DLPEIAFAGRSNVGKSSMLNALTRQW 116 (192)
Q Consensus 91 ~~~~i~lvG~~n~GKStlin~L~~~~ 116 (192)
.+-.++|+|++|+|||||++.|+|..
T Consensus 25 ~Ge~~~IvG~nGsGKSTLlk~l~Gl~ 50 (255)
T cd03236 25 EGQVLGLVGPNGIGKSTALKILAGKL 50 (255)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCc
Confidence 45589999999999999999999974
No 416
>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional
Probab=96.73 E-value=0.0015 Score=53.33 Aligned_cols=26 Identities=12% Similarity=0.166 Sum_probs=23.1
Q ss_pred CCCeEEEEecCCCcHHHHHHHHhhcc
Q 029512 91 DLPEIAFAGRSNVGKSSMLNALTRQW 116 (192)
Q Consensus 91 ~~~~i~lvG~~n~GKStlin~L~~~~ 116 (192)
.+-.++|+|++|+|||||++.|.|..
T Consensus 28 ~Ge~~~l~G~nGsGKSTLl~~l~G~~ 53 (241)
T PRK10895 28 SGEIVGLLGPNGAGKTTTFYMVVGIV 53 (241)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 45589999999999999999999963
No 417
>PRK15056 manganese/iron transporter ATP-binding protein; Provisional
Probab=96.73 E-value=0.0014 Score=54.60 Aligned_cols=26 Identities=27% Similarity=0.267 Sum_probs=23.1
Q ss_pred CCCeEEEEecCCCcHHHHHHHHhhcc
Q 029512 91 DLPEIAFAGRSNVGKSSMLNALTRQW 116 (192)
Q Consensus 91 ~~~~i~lvG~~n~GKStlin~L~~~~ 116 (192)
.+-.++|+|++|+|||||++.|+|..
T Consensus 32 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 57 (272)
T PRK15056 32 GGSIAALVGVNGSGKSTLFKALMGFV 57 (272)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 45589999999999999999999863
No 418
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=96.73 E-value=0.0015 Score=53.14 Aligned_cols=26 Identities=31% Similarity=0.457 Sum_probs=23.0
Q ss_pred CCCeEEEEecCCCcHHHHHHHHhhcc
Q 029512 91 DLPEIAFAGRSNVGKSSMLNALTRQW 116 (192)
Q Consensus 91 ~~~~i~lvG~~n~GKStlin~L~~~~ 116 (192)
.+-.++|+|++|+|||||++.|+|..
T Consensus 26 ~Ge~~~i~G~nGsGKSTLl~~l~G~~ 51 (236)
T TIGR03864 26 PGEFVALLGPNGAGKSTLFSLLTRLY 51 (236)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCc
Confidence 34589999999999999999999863
No 419
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=96.72 E-value=0.0016 Score=50.89 Aligned_cols=26 Identities=23% Similarity=0.330 Sum_probs=23.0
Q ss_pred CCCeEEEEecCCCcHHHHHHHHhhcc
Q 029512 91 DLPEIAFAGRSNVGKSSMLNALTRQW 116 (192)
Q Consensus 91 ~~~~i~lvG~~n~GKStlin~L~~~~ 116 (192)
.+-.++|+|++|+|||||++.|+|..
T Consensus 24 ~G~~~~l~G~nGsGKStLl~~i~G~~ 49 (180)
T cd03214 24 AGEIVGILGPNGAGKSTLLKTLAGLL 49 (180)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 35589999999999999999999863
No 420
>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=96.72 E-value=0.0015 Score=52.85 Aligned_cols=26 Identities=27% Similarity=0.381 Sum_probs=23.0
Q ss_pred CCCeEEEEecCCCcHHHHHHHHhhcc
Q 029512 91 DLPEIAFAGRSNVGKSSMLNALTRQW 116 (192)
Q Consensus 91 ~~~~i~lvG~~n~GKStlin~L~~~~ 116 (192)
.+-.++|+|++|+|||||++.|+|..
T Consensus 25 ~Ge~~~l~G~nGsGKSTLl~~l~G~~ 50 (230)
T TIGR03410 25 KGEVTCVLGRNGVGKTTLLKTLMGLL 50 (230)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 34589999999999999999999863
No 421
>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD. This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.
Probab=96.71 E-value=0.0015 Score=52.97 Aligned_cols=26 Identities=27% Similarity=0.184 Sum_probs=23.0
Q ss_pred CCCeEEEEecCCCcHHHHHHHHhhcc
Q 029512 91 DLPEIAFAGRSNVGKSSMLNALTRQW 116 (192)
Q Consensus 91 ~~~~i~lvG~~n~GKStlin~L~~~~ 116 (192)
.+-.++|+|++|+|||||++.|+|..
T Consensus 11 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 36 (230)
T TIGR02770 11 RGEVLALVGESGSGKSLTCLAILGLL 36 (230)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 34589999999999999999999974
No 422
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=96.71 E-value=0.0015 Score=50.75 Aligned_cols=22 Identities=27% Similarity=0.391 Sum_probs=20.3
Q ss_pred eEEEEecCCCcHHHHHHHHhhc
Q 029512 94 EIAFAGRSNVGKSSMLNALTRQ 115 (192)
Q Consensus 94 ~i~lvG~~n~GKStlin~L~~~ 115 (192)
.++|+|++|+||||+++.|.+.
T Consensus 3 ~~~i~G~sGsGKttl~~~l~~~ 24 (179)
T TIGR02322 3 LIYVVGPSGAGKDTLLDYARAR 24 (179)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999999875
No 423
>COG1217 TypA Predicted membrane GTPase involved in stress response [Signal transduction mechanisms]
Probab=96.71 E-value=0.0066 Score=54.42 Aligned_cols=83 Identities=27% Similarity=0.344 Sum_probs=52.3
Q ss_pred CCCeEEEEecCCCcHHHHHHHHhhccCc--------eeecC------CCCceeEE---EEEeeCCeEEEEECCCCCCCCC
Q 029512 91 DLPEIAFAGRSNVGKSSMLNALTRQWGV--------VRTSD------KPGLTQTI---NFFKLGTKLCLVDLPGYGFAYA 153 (192)
Q Consensus 91 ~~~~i~lvG~~n~GKStlin~L~~~~~~--------~~~~~------~~g~T~~~---~~~~~~~~~~lvDtPG~~~~~~ 153 (192)
...+|+++..-.-|||||+..|+..... ..+.+ .-|.|.-. ...+.+..+.++||||-.+-.
T Consensus 4 ~iRNIAIIAHVDHGKTTLVD~LLkQSGtf~~~e~v~ERvMDSnDlEkERGITILaKnTav~~~~~~INIvDTPGHADFG- 82 (603)
T COG1217 4 DIRNIAIIAHVDHGKTTLVDALLKQSGTFREREEVAERVMDSNDLEKERGITILAKNTAVNYNGTRINIVDTPGHADFG- 82 (603)
T ss_pred ccceeEEEEEecCCcchHHHHHHhhccccccccchhhhhcCccchhhhcCcEEEeccceeecCCeEEEEecCCCcCCcc-
Confidence 3458999999999999999999975310 01111 12344322 133457899999999954311
Q ss_pred hHHHHHHHHHHHhhhccCceeEEEEEEecCC
Q 029512 154 KEEVKDAWEELVSISYRNFWSCTCFLIYIFY 184 (192)
Q Consensus 154 ~~~~~~~~~~~~~l~~~~~~~~v~~vvD~s~ 184 (192)
.+..+ ++ ..+|.++++||++.
T Consensus 83 -GEVER----vl-----~MVDgvlLlVDA~E 103 (603)
T COG1217 83 -GEVER----VL-----SMVDGVLLLVDASE 103 (603)
T ss_pred -chhhh----hh-----hhcceEEEEEEccc
Confidence 11111 11 24699999999864
No 424
>COG0480 FusA Translation elongation factors (GTPases) [Translation, ribosomal structure and biogenesis]
Probab=96.71 E-value=0.0046 Score=58.28 Aligned_cols=83 Identities=19% Similarity=0.268 Sum_probs=52.2
Q ss_pred CCCCeEEEEecCCCcHHHHHHHHhhccC----ceeec------C------CCCceeEE---EEEeeC-CeEEEEECCCCC
Q 029512 90 PDLPEIAFAGRSNVGKSSMLNALTRQWG----VVRTS------D------KPGLTQTI---NFFKLG-TKLCLVDLPGYG 149 (192)
Q Consensus 90 ~~~~~i~lvG~~n~GKStlin~L~~~~~----~~~~~------~------~~g~T~~~---~~~~~~-~~~~lvDtPG~~ 149 (192)
....+|+++|+..+|||||.-+|+-..+ ...+. + .-|.|... ..++.+ ..++++||||-.
T Consensus 8 ~~~RNigI~aHidaGKTTltE~lL~~tG~i~k~G~v~~g~~~~D~~e~EqeRGITI~saa~s~~~~~~~~iNlIDTPGHV 87 (697)
T COG0480 8 ERIRNIGIVAHIDAGKTTLTERILFYTGIISKIGEVHDGAATMDWMEQEQERGITITSAATTLFWKGDYRINLIDTPGHV 87 (697)
T ss_pred ccceEEEEEeccCCChHHHHHHHHHHcCCcCCCccccCCCccCCCcHHHHhcCCEEeeeeeEEEEcCceEEEEeCCCCcc
Confidence 3456999999999999999999984321 11111 1 11344332 244454 899999999976
Q ss_pred CCCChHHHHHHHHHHHhhhccCceeEEEEEEecC
Q 029512 150 FAYAKEEVKDAWEELVSISYRNFWSCTCFLIYIF 183 (192)
Q Consensus 150 ~~~~~~~~~~~~~~~~~l~~~~~~~~v~~vvD~s 183 (192)
+-. .+.... .+.+|+.++|+|+-
T Consensus 88 DFt--~EV~rs---------lrvlDgavvVvdav 110 (697)
T COG0480 88 DFT--IEVERS---------LRVLDGAVVVVDAV 110 (697)
T ss_pred ccH--HHHHHH---------HHhhcceEEEEECC
Confidence 521 111111 23468999999873
No 425
>PRK14239 phosphate transporter ATP-binding protein; Provisional
Probab=96.70 E-value=0.0015 Score=53.50 Aligned_cols=24 Identities=33% Similarity=0.457 Sum_probs=21.9
Q ss_pred CCeEEEEecCCCcHHHHHHHHhhc
Q 029512 92 LPEIAFAGRSNVGKSSMLNALTRQ 115 (192)
Q Consensus 92 ~~~i~lvG~~n~GKStlin~L~~~ 115 (192)
+-.++|+|++|+|||||++.|+|.
T Consensus 31 Ge~~~i~G~nGsGKSTLl~~l~Gl 54 (252)
T PRK14239 31 NEITALIGPSGSGKSTLLRSINRM 54 (252)
T ss_pred CcEEEEECCCCCCHHHHHHHHhcc
Confidence 458999999999999999999985
No 426
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=96.70 E-value=0.0037 Score=50.91 Aligned_cols=24 Identities=38% Similarity=0.488 Sum_probs=21.0
Q ss_pred CCeEEEEecCCCcHHHHHHHHhhc
Q 029512 92 LPEIAFAGRSNVGKSSMLNALTRQ 115 (192)
Q Consensus 92 ~~~i~lvG~~n~GKStlin~L~~~ 115 (192)
....+++|+||||||||+..|-.-
T Consensus 33 ~~VTAlIGPSGcGKST~LR~lNRm 56 (253)
T COG1117 33 NKVTALIGPSGCGKSTLLRCLNRM 56 (253)
T ss_pred CceEEEECCCCcCHHHHHHHHHhh
Confidence 457899999999999999988764
No 427
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=96.69 E-value=0.0019 Score=46.29 Aligned_cols=24 Identities=29% Similarity=0.479 Sum_probs=21.6
Q ss_pred CeEEEEecCCCcHHHHHHHHhhcc
Q 029512 93 PEIAFAGRSNVGKSSMLNALTRQW 116 (192)
Q Consensus 93 ~~i~lvG~~n~GKStlin~L~~~~ 116 (192)
..++++|++|+||||++..|....
T Consensus 3 ~~~~l~G~~G~GKTtl~~~l~~~~ 26 (148)
T smart00382 3 EVILIVGPPGSGKTTLARALAREL 26 (148)
T ss_pred CEEEEECCCCCcHHHHHHHHHhcc
Confidence 578999999999999999999763
No 428
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.69 E-value=0.0017 Score=50.42 Aligned_cols=26 Identities=12% Similarity=0.222 Sum_probs=22.8
Q ss_pred CCCeEEEEecCCCcHHHHHHHHhhcc
Q 029512 91 DLPEIAFAGRSNVGKSSMLNALTRQW 116 (192)
Q Consensus 91 ~~~~i~lvG~~n~GKStlin~L~~~~ 116 (192)
.+-.++|+|++|+|||||++.|+|..
T Consensus 25 ~Ge~~~i~G~nGsGKStLl~~l~G~~ 50 (173)
T cd03230 25 KGEIYGLLGPNGAGKTTLIKIILGLL 50 (173)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 34589999999999999999999863
No 429
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.68 E-value=0.0015 Score=52.04 Aligned_cols=26 Identities=27% Similarity=0.318 Sum_probs=23.0
Q ss_pred CCCeEEEEecCCCcHHHHHHHHhhcc
Q 029512 91 DLPEIAFAGRSNVGKSSMLNALTRQW 116 (192)
Q Consensus 91 ~~~~i~lvG~~n~GKStlin~L~~~~ 116 (192)
.+-.++|+|++|+|||||++.|+|..
T Consensus 32 ~Ge~~~i~G~nGsGKSTLl~~l~G~~ 57 (202)
T cd03233 32 PGEMVLVLGRPGSGCSTLLKALANRT 57 (202)
T ss_pred CCcEEEEECCCCCCHHHHHHHhcccC
Confidence 34589999999999999999999963
No 430
>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional
Probab=96.68 E-value=0.0017 Score=53.15 Aligned_cols=26 Identities=23% Similarity=0.335 Sum_probs=22.9
Q ss_pred CCCeEEEEecCCCcHHHHHHHHhhcc
Q 029512 91 DLPEIAFAGRSNVGKSSMLNALTRQW 116 (192)
Q Consensus 91 ~~~~i~lvG~~n~GKStlin~L~~~~ 116 (192)
.+-.++|+|++|+|||||++.|+|..
T Consensus 28 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 53 (241)
T PRK14250 28 GGAIYTIVGPSGAGKSTLIKLINRLI 53 (241)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 34589999999999999999999863
No 431
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=96.68 E-value=0.0017 Score=52.11 Aligned_cols=26 Identities=19% Similarity=0.326 Sum_probs=23.0
Q ss_pred CCCeEEEEecCCCcHHHHHHHHhhcc
Q 029512 91 DLPEIAFAGRSNVGKSSMLNALTRQW 116 (192)
Q Consensus 91 ~~~~i~lvG~~n~GKStlin~L~~~~ 116 (192)
.+-.++|+|++|+|||||++.|+|..
T Consensus 36 ~Ge~~~i~G~nGsGKSTLl~~i~G~~ 61 (214)
T PRK13543 36 AGEALLVQGDNGAGKTTLLRVLAGLL 61 (214)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCCC
Confidence 34589999999999999999999964
No 432
>PRK14269 phosphate ABC transporter ATP-binding protein; Provisional
Probab=96.68 E-value=0.0017 Score=53.26 Aligned_cols=25 Identities=32% Similarity=0.432 Sum_probs=22.5
Q ss_pred CCCeEEEEecCCCcHHHHHHHHhhc
Q 029512 91 DLPEIAFAGRSNVGKSSMLNALTRQ 115 (192)
Q Consensus 91 ~~~~i~lvG~~n~GKStlin~L~~~ 115 (192)
.+-.++|+|++|+|||||++.|+|.
T Consensus 27 ~Ge~~~i~G~nGsGKSTLl~~l~Gl 51 (246)
T PRK14269 27 QNKITALIGASGCGKSTFLRCFNRM 51 (246)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcc
Confidence 3458999999999999999999985
No 433
>PRK14262 phosphate ABC transporter ATP-binding protein; Provisional
Probab=96.68 E-value=0.0017 Score=53.30 Aligned_cols=24 Identities=29% Similarity=0.451 Sum_probs=22.0
Q ss_pred CCeEEEEecCCCcHHHHHHHHhhc
Q 029512 92 LPEIAFAGRSNVGKSSMLNALTRQ 115 (192)
Q Consensus 92 ~~~i~lvG~~n~GKStlin~L~~~ 115 (192)
+-.++|+|++|+|||||++.|+|.
T Consensus 29 Ge~~~i~G~nGsGKSTLl~~i~Gl 52 (250)
T PRK14262 29 NQITAIIGPSGCGKTTLLRSINRM 52 (250)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcc
Confidence 458999999999999999999985
No 434
>PRK14267 phosphate ABC transporter ATP-binding protein; Provisional
Probab=96.68 E-value=0.0017 Score=53.38 Aligned_cols=26 Identities=31% Similarity=0.431 Sum_probs=22.9
Q ss_pred CCCeEEEEecCCCcHHHHHHHHhhcc
Q 029512 91 DLPEIAFAGRSNVGKSSMLNALTRQW 116 (192)
Q Consensus 91 ~~~~i~lvG~~n~GKStlin~L~~~~ 116 (192)
.+-.++|+|++|+|||||++.|+|..
T Consensus 29 ~Ge~~~l~G~nGsGKSTLl~~l~G~~ 54 (253)
T PRK14267 29 QNGVFALMGPSGCGKSTLLRTFNRLL 54 (253)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhccC
Confidence 34588999999999999999999963
No 435
>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.68 E-value=0.0017 Score=52.98 Aligned_cols=26 Identities=19% Similarity=0.294 Sum_probs=22.9
Q ss_pred CCCeEEEEecCCCcHHHHHHHHhhcc
Q 029512 91 DLPEIAFAGRSNVGKSSMLNALTRQW 116 (192)
Q Consensus 91 ~~~~i~lvG~~n~GKStlin~L~~~~ 116 (192)
.+-.++|+|++|+|||||++.|+|..
T Consensus 26 ~Ge~~~i~G~nGsGKSTLl~~l~G~~ 51 (242)
T cd03295 26 KGEFLVLIGPSGSGKTTTMKMINRLI 51 (242)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 34588999999999999999999863
No 436
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional
Probab=96.68 E-value=0.0017 Score=52.50 Aligned_cols=25 Identities=24% Similarity=0.247 Sum_probs=22.5
Q ss_pred CCCeEEEEecCCCcHHHHHHHHhhc
Q 029512 91 DLPEIAFAGRSNVGKSSMLNALTRQ 115 (192)
Q Consensus 91 ~~~~i~lvG~~n~GKStlin~L~~~ 115 (192)
.+-.++|+|++|+|||||++.|+|.
T Consensus 32 ~Ge~~~i~G~nGsGKSTLl~~l~G~ 56 (225)
T PRK10247 32 AGEFKLITGPSGCGKSTLLKIVASL 56 (225)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcc
Confidence 3458999999999999999999986
No 437
>PRK14274 phosphate ABC transporter ATP-binding protein; Provisional
Probab=96.68 E-value=0.0017 Score=53.62 Aligned_cols=25 Identities=28% Similarity=0.377 Sum_probs=22.5
Q ss_pred CCCeEEEEecCCCcHHHHHHHHhhc
Q 029512 91 DLPEIAFAGRSNVGKSSMLNALTRQ 115 (192)
Q Consensus 91 ~~~~i~lvG~~n~GKStlin~L~~~ 115 (192)
.+-.++|+|++|+|||||++.|+|.
T Consensus 37 ~Ge~~~l~G~nGsGKSTLl~~l~G~ 61 (259)
T PRK14274 37 ENEVTAIIGPSGCGKSTFIKTLNLM 61 (259)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhh
Confidence 3458999999999999999999986
No 438
>PRK14273 phosphate ABC transporter ATP-binding protein; Provisional
Probab=96.67 E-value=0.0017 Score=53.44 Aligned_cols=26 Identities=35% Similarity=0.400 Sum_probs=23.0
Q ss_pred CCCeEEEEecCCCcHHHHHHHHhhcc
Q 029512 91 DLPEIAFAGRSNVGKSSMLNALTRQW 116 (192)
Q Consensus 91 ~~~~i~lvG~~n~GKStlin~L~~~~ 116 (192)
.+-.++|+|++|+|||||++.|+|..
T Consensus 32 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 57 (254)
T PRK14273 32 KNSITALIGPSGCGKSTFLRTLNRMN 57 (254)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhccc
Confidence 35589999999999999999999863
No 439
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=96.67 E-value=0.0046 Score=50.27 Aligned_cols=26 Identities=23% Similarity=0.299 Sum_probs=22.9
Q ss_pred CCCeEEEEecCCCcHHHHHHHHhhcc
Q 029512 91 DLPEIAFAGRSNVGKSSMLNALTRQW 116 (192)
Q Consensus 91 ~~~~i~lvG~~n~GKStlin~L~~~~ 116 (192)
....++|.|++|+|||||++.|.+..
T Consensus 32 ~~~iigi~G~~GsGKTTl~~~L~~~l 57 (229)
T PRK09270 32 RRTIVGIAGPPGAGKSTLAEFLEALL 57 (229)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 35689999999999999999999763
No 440
>PRK14241 phosphate transporter ATP-binding protein; Provisional
Probab=96.67 E-value=0.0016 Score=53.71 Aligned_cols=26 Identities=38% Similarity=0.505 Sum_probs=23.0
Q ss_pred CCCeEEEEecCCCcHHHHHHHHhhcc
Q 029512 91 DLPEIAFAGRSNVGKSSMLNALTRQW 116 (192)
Q Consensus 91 ~~~~i~lvG~~n~GKStlin~L~~~~ 116 (192)
.+-.++|+|++|+|||||++.|.|..
T Consensus 29 ~Ge~~~i~G~nGsGKSTLl~~laGl~ 54 (258)
T PRK14241 29 PRSVTAFIGPSGCGKSTVLRTLNRMH 54 (258)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhccC
Confidence 34589999999999999999999963
No 441
>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.67 E-value=0.0017 Score=54.12 Aligned_cols=26 Identities=27% Similarity=0.363 Sum_probs=23.2
Q ss_pred CCCeEEEEecCCCcHHHHHHHHhhcc
Q 029512 91 DLPEIAFAGRSNVGKSSMLNALTRQW 116 (192)
Q Consensus 91 ~~~~i~lvG~~n~GKStlin~L~~~~ 116 (192)
.+-.++|+|++|+|||||++.|+|..
T Consensus 49 ~Ge~~~l~G~nGsGKSTLl~~L~Gl~ 74 (269)
T cd03294 49 EGEIFVIMGLSGSGKSTLLRCINRLI 74 (269)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 45589999999999999999999863
No 442
>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Probab=96.67 E-value=0.0018 Score=52.67 Aligned_cols=26 Identities=31% Similarity=0.482 Sum_probs=23.1
Q ss_pred CCCeEEEEecCCCcHHHHHHHHhhcc
Q 029512 91 DLPEIAFAGRSNVGKSSMLNALTRQW 116 (192)
Q Consensus 91 ~~~~i~lvG~~n~GKStlin~L~~~~ 116 (192)
.+-.++|+|++|+|||||++.|+|..
T Consensus 28 ~Ge~~~l~G~nGsGKSTLl~~i~G~~ 53 (238)
T cd03249 28 PGKTVALVGSSGCGKSTVVSLLERFY 53 (238)
T ss_pred CCCEEEEEeCCCCCHHHHHHHHhccC
Confidence 35589999999999999999999863
No 443
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=96.67 E-value=0.0018 Score=51.62 Aligned_cols=26 Identities=23% Similarity=0.273 Sum_probs=23.1
Q ss_pred CCCeEEEEecCCCcHHHHHHHHhhcc
Q 029512 91 DLPEIAFAGRSNVGKSSMLNALTRQW 116 (192)
Q Consensus 91 ~~~~i~lvG~~n~GKStlin~L~~~~ 116 (192)
.+-.++|+|++|+|||||++.|+|..
T Consensus 26 ~Ge~~~l~G~nGsGKSTLl~~l~G~~ 51 (204)
T PRK13538 26 AGELVQIEGPNGAGKTSLLRILAGLA 51 (204)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 34589999999999999999999963
No 444
>PRK10744 pstB phosphate transporter ATP-binding protein; Provisional
Probab=96.67 E-value=0.0017 Score=53.72 Aligned_cols=25 Identities=36% Similarity=0.522 Sum_probs=22.6
Q ss_pred CCCeEEEEecCCCcHHHHHHHHhhc
Q 029512 91 DLPEIAFAGRSNVGKSSMLNALTRQ 115 (192)
Q Consensus 91 ~~~~i~lvG~~n~GKStlin~L~~~ 115 (192)
.+-.++|+|++|+|||||++.|+|.
T Consensus 38 ~Ge~~~i~G~nGsGKSTLl~~l~Gl 62 (260)
T PRK10744 38 KNQVTAFIGPSGCGKSTLLRTFNRM 62 (260)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcc
Confidence 3458999999999999999999986
No 445
>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D. This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.
Probab=96.66 E-value=0.0017 Score=52.69 Aligned_cols=25 Identities=32% Similarity=0.379 Sum_probs=22.6
Q ss_pred CCeEEEEecCCCcHHHHHHHHhhcc
Q 029512 92 LPEIAFAGRSNVGKSSMLNALTRQW 116 (192)
Q Consensus 92 ~~~i~lvG~~n~GKStlin~L~~~~ 116 (192)
+-.++|+|++|+|||||++.|+|..
T Consensus 11 Ge~~~i~G~nGsGKSTLl~~l~Gl~ 35 (230)
T TIGR01184 11 GEFISLIGHSGCGKSTLLNLISGLA 35 (230)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 4589999999999999999999863
No 446
>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein. This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.
Probab=96.66 E-value=0.0018 Score=53.09 Aligned_cols=26 Identities=35% Similarity=0.424 Sum_probs=23.0
Q ss_pred CCCeEEEEecCCCcHHHHHHHHhhcc
Q 029512 91 DLPEIAFAGRSNVGKSSMLNALTRQW 116 (192)
Q Consensus 91 ~~~~i~lvG~~n~GKStlin~L~~~~ 116 (192)
.+-.++|+|++|+|||||++.|+|..
T Consensus 26 ~Ge~~~i~G~nGsGKSTLl~~l~G~~ 51 (247)
T TIGR00972 26 KNQVTALIGPSGCGKSTLLRSLNRMN 51 (247)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhccC
Confidence 35589999999999999999999864
No 447
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=96.66 E-value=0.0018 Score=51.49 Aligned_cols=25 Identities=20% Similarity=0.270 Sum_probs=22.7
Q ss_pred CCCeEEEEecCCCcHHHHHHHHhhc
Q 029512 91 DLPEIAFAGRSNVGKSSMLNALTRQ 115 (192)
Q Consensus 91 ~~~~i~lvG~~n~GKStlin~L~~~ 115 (192)
.+-.++|+|++|+|||||++.|.|.
T Consensus 25 ~Ge~~~i~G~nGsGKStLl~~l~G~ 49 (200)
T cd03217 25 KGEVHALMGPNGSGKSTLAKTIMGH 49 (200)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCC
Confidence 3558999999999999999999996
No 448
>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.66 E-value=0.0018 Score=51.66 Aligned_cols=26 Identities=31% Similarity=0.283 Sum_probs=23.1
Q ss_pred CCCeEEEEecCCCcHHHHHHHHhhcc
Q 029512 91 DLPEIAFAGRSNVGKSSMLNALTRQW 116 (192)
Q Consensus 91 ~~~~i~lvG~~n~GKStlin~L~~~~ 116 (192)
.+-.++|+|++|+|||||++.|+|..
T Consensus 23 ~Ge~~~l~G~nGsGKSTLl~~l~gl~ 48 (211)
T cd03298 23 QGEITAIVGPSGSGKSTLLNLIAGFE 48 (211)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 35589999999999999999999863
No 449
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=96.66 E-value=0.0019 Score=51.49 Aligned_cols=26 Identities=35% Similarity=0.470 Sum_probs=22.8
Q ss_pred CCCeEEEEecCCCcHHHHHHHHhhcc
Q 029512 91 DLPEIAFAGRSNVGKSSMLNALTRQW 116 (192)
Q Consensus 91 ~~~~i~lvG~~n~GKStlin~L~~~~ 116 (192)
.+-.++|+|++|+|||||++.|+|..
T Consensus 33 ~G~~~~i~G~nGsGKSTLl~~l~Gl~ 58 (207)
T cd03369 33 AGEKIGIVGRTGAGKSTLILALFRFL 58 (207)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhccc
Confidence 34589999999999999999999863
No 450
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=96.65 E-value=0.0019 Score=50.28 Aligned_cols=26 Identities=42% Similarity=0.549 Sum_probs=22.9
Q ss_pred CCCeEEEEecCCCcHHHHHHHHhhcc
Q 029512 91 DLPEIAFAGRSNVGKSSMLNALTRQW 116 (192)
Q Consensus 91 ~~~~i~lvG~~n~GKStlin~L~~~~ 116 (192)
.+-.++++|++|+|||||++.|+|..
T Consensus 27 ~Ge~~~i~G~nGsGKStLl~~l~G~~ 52 (178)
T cd03247 27 QGEKIALLGRSGSGKSTLLQLLTGDL 52 (178)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhccC
Confidence 34589999999999999999999863
No 451
>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional
Probab=96.65 E-value=0.0018 Score=53.79 Aligned_cols=26 Identities=35% Similarity=0.359 Sum_probs=23.0
Q ss_pred CCCeEEEEecCCCcHHHHHHHHhhcc
Q 029512 91 DLPEIAFAGRSNVGKSSMLNALTRQW 116 (192)
Q Consensus 91 ~~~~i~lvG~~n~GKStlin~L~~~~ 116 (192)
.+-.++|+|++|+|||||++.|+|..
T Consensus 37 ~Ge~~~I~G~NGsGKSTLlk~l~Gl~ 62 (257)
T PRK11247 37 AGQFVAVVGRSGCGKSTLLRLLAGLE 62 (257)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 34589999999999999999999863
No 452
>PRK14256 phosphate ABC transporter ATP-binding protein; Provisional
Probab=96.65 E-value=0.0018 Score=53.20 Aligned_cols=25 Identities=32% Similarity=0.481 Sum_probs=22.6
Q ss_pred CCCeEEEEecCCCcHHHHHHHHhhc
Q 029512 91 DLPEIAFAGRSNVGKSSMLNALTRQ 115 (192)
Q Consensus 91 ~~~~i~lvG~~n~GKStlin~L~~~ 115 (192)
.+-.++|+|++|+|||||++.|+|.
T Consensus 29 ~Ge~~~i~G~nGsGKSTLl~~l~Gl 53 (252)
T PRK14256 29 ENSVTAIIGPSGCGKSTVLRSINRM 53 (252)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhc
Confidence 3458999999999999999999996
No 453
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=96.65 E-value=0.0075 Score=53.83 Aligned_cols=23 Identities=22% Similarity=0.261 Sum_probs=19.0
Q ss_pred CCeEEEEecCCCcHHHHHHHHhh
Q 029512 92 LPEIAFAGRSNVGKSSMLNALTR 114 (192)
Q Consensus 92 ~~~i~lvG~~n~GKStlin~L~~ 114 (192)
...++++|.+|+||||+.-.|+.
T Consensus 99 p~vi~~vG~~GsGKTTtaakLA~ 121 (428)
T TIGR00959 99 PTVILMVGLQGSGKTTTCGKLAY 121 (428)
T ss_pred CEEEEEECCCCCcHHHHHHHHHH
Confidence 34788999999999999776653
No 454
>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=96.65 E-value=0.0016 Score=53.46 Aligned_cols=26 Identities=23% Similarity=0.489 Sum_probs=23.0
Q ss_pred CCCeEEEEecCCCcHHHHHHHHhhcc
Q 029512 91 DLPEIAFAGRSNVGKSSMLNALTRQW 116 (192)
Q Consensus 91 ~~~~i~lvG~~n~GKStlin~L~~~~ 116 (192)
.+-.++|+|++|+|||||++.|+|..
T Consensus 30 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 55 (255)
T PRK11300 30 EQEIVSLIGPNGAGKTTVFNCLTGFY 55 (255)
T ss_pred CCeEEEEECCCCCCHHHHHHHHhCCc
Confidence 35589999999999999999999863
No 455
>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.65 E-value=0.0015 Score=52.25 Aligned_cols=24 Identities=25% Similarity=0.314 Sum_probs=22.0
Q ss_pred CeEEEEecCCCcHHHHHHHHhhcc
Q 029512 93 PEIAFAGRSNVGKSSMLNALTRQW 116 (192)
Q Consensus 93 ~~i~lvG~~n~GKStlin~L~~~~ 116 (192)
-.++|+|++|+|||||++.|+|..
T Consensus 24 e~~~i~G~nGsGKSTLl~~l~G~~ 47 (214)
T cd03297 24 EVTGIFGASGAGKSTLLRCIAGLE 47 (214)
T ss_pred eeEEEECCCCCCHHHHHHHHhCCC
Confidence 488999999999999999999863
No 456
>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters. Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Probab=96.65 E-value=0.0019 Score=51.85 Aligned_cols=26 Identities=31% Similarity=0.480 Sum_probs=23.0
Q ss_pred CCCeEEEEecCCCcHHHHHHHHhhcc
Q 029512 91 DLPEIAFAGRSNVGKSSMLNALTRQW 116 (192)
Q Consensus 91 ~~~~i~lvG~~n~GKStlin~L~~~~ 116 (192)
.+-.++|+|++|+|||||++.|+|..
T Consensus 29 ~G~~~~i~G~nGsGKSTLl~~i~G~~ 54 (220)
T cd03245 29 AGEKVAIIGRVGSGKSTLLKLLAGLY 54 (220)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCc
Confidence 35589999999999999999999863
No 457
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=96.65 E-value=0.002 Score=49.97 Aligned_cols=26 Identities=23% Similarity=0.254 Sum_probs=22.9
Q ss_pred CCCeEEEEecCCCcHHHHHHHHhhcc
Q 029512 91 DLPEIAFAGRSNVGKSSMLNALTRQW 116 (192)
Q Consensus 91 ~~~~i~lvG~~n~GKStlin~L~~~~ 116 (192)
.+-.++|+|++|+|||||++.|+|..
T Consensus 27 ~Ge~~~i~G~nGsGKStLl~~l~G~~ 52 (173)
T cd03246 27 PGESLAIIGPSGSGKSTLARLILGLL 52 (173)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhcc
Confidence 34589999999999999999999863
No 458
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=96.64 E-value=0.002 Score=49.80 Aligned_cols=26 Identities=35% Similarity=0.565 Sum_probs=23.0
Q ss_pred CCCeEEEEecCCCcHHHHHHHHhhcc
Q 029512 91 DLPEIAFAGRSNVGKSSMLNALTRQW 116 (192)
Q Consensus 91 ~~~~i~lvG~~n~GKStlin~L~~~~ 116 (192)
.+-.++++|++|+|||||++.|+|..
T Consensus 26 ~Ge~~~i~G~nGsGKSTLl~~l~G~~ 51 (166)
T cd03223 26 PGDRLLITGPSGTGKSSLFRALAGLW 51 (166)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 34589999999999999999999863
No 459
>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.
Probab=96.64 E-value=0.0018 Score=53.19 Aligned_cols=26 Identities=31% Similarity=0.345 Sum_probs=23.0
Q ss_pred CCCeEEEEecCCCcHHHHHHHHhhcc
Q 029512 91 DLPEIAFAGRSNVGKSSMLNALTRQW 116 (192)
Q Consensus 91 ~~~~i~lvG~~n~GKStlin~L~~~~ 116 (192)
.+-.++|+|++|+|||||++.|+|..
T Consensus 25 ~Ge~~~i~G~nGsGKSTLl~~l~G~~ 50 (252)
T TIGR03005 25 AGEKVALIGPSGSGKSTILRILMTLE 50 (252)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 34589999999999999999999863
No 460
>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit. This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.
Probab=96.64 E-value=0.0018 Score=54.92 Aligned_cols=26 Identities=23% Similarity=0.372 Sum_probs=22.9
Q ss_pred CCCeEEEEecCCCcHHHHHHHHhhcc
Q 029512 91 DLPEIAFAGRSNVGKSSMLNALTRQW 116 (192)
Q Consensus 91 ~~~~i~lvG~~n~GKStlin~L~~~~ 116 (192)
.+-.++|+|++|+|||||++.|+|-.
T Consensus 18 ~Ge~~~l~G~NGaGKSTLl~~l~Gl~ 43 (302)
T TIGR01188 18 EGEVFGFLGPNGAGKTTTIRMLTTLL 43 (302)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 34588999999999999999999863
No 461
>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=96.64 E-value=0.0017 Score=54.03 Aligned_cols=25 Identities=24% Similarity=0.413 Sum_probs=22.4
Q ss_pred CCeEEEEecCCCcHHHHHHHHhhcc
Q 029512 92 LPEIAFAGRSNVGKSSMLNALTRQW 116 (192)
Q Consensus 92 ~~~i~lvG~~n~GKStlin~L~~~~ 116 (192)
+-.++|+|++|+|||||++.|+|..
T Consensus 27 Ge~~~i~G~nGsGKSTLl~~l~Gl~ 51 (271)
T PRK13638 27 SPVTGLVGANGCGKSTLFMNLSGLL 51 (271)
T ss_pred CCEEEEECCCCCCHHHHHHHHcCCC
Confidence 4589999999999999999999863
No 462
>PRK14240 phosphate transporter ATP-binding protein; Provisional
Probab=96.64 E-value=0.0018 Score=53.03 Aligned_cols=25 Identities=36% Similarity=0.496 Sum_probs=22.3
Q ss_pred CCCeEEEEecCCCcHHHHHHHHhhc
Q 029512 91 DLPEIAFAGRSNVGKSSMLNALTRQ 115 (192)
Q Consensus 91 ~~~~i~lvG~~n~GKStlin~L~~~ 115 (192)
.+-.++|+|++|+|||||++.|+|.
T Consensus 28 ~Ge~~~i~G~nGsGKSTLl~~i~G~ 52 (250)
T PRK14240 28 ENQVTALIGPSGCGKSTFLRTLNRM 52 (250)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcc
Confidence 3458999999999999999999985
No 463
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=96.63 E-value=0.0016 Score=47.19 Aligned_cols=22 Identities=23% Similarity=0.369 Sum_probs=19.9
Q ss_pred CCeEEEEecCCCcHHHHHHHHh
Q 029512 92 LPEIAFAGRSNVGKSSMLNALT 113 (192)
Q Consensus 92 ~~~i~lvG~~n~GKStlin~L~ 113 (192)
.-.++|+|++|+|||||++.+.
T Consensus 15 ge~v~I~GpSGsGKSTLl~~l~ 36 (107)
T cd00820 15 KVGVLITGDSGIGKTELALELI 36 (107)
T ss_pred CEEEEEEcCCCCCHHHHHHHhh
Confidence 3478999999999999999987
No 464
>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL. Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.
Probab=96.63 E-value=0.0019 Score=51.96 Aligned_cols=26 Identities=31% Similarity=0.479 Sum_probs=23.1
Q ss_pred CCCeEEEEecCCCcHHHHHHHHhhcc
Q 029512 91 DLPEIAFAGRSNVGKSSMLNALTRQW 116 (192)
Q Consensus 91 ~~~~i~lvG~~n~GKStlin~L~~~~ 116 (192)
.+-.++|+|++|+|||||++.|+|..
T Consensus 33 ~Ge~~~l~G~nGsGKSTLl~~i~G~~ 58 (224)
T TIGR02324 33 AGECVALSGPSGAGKSTLLKSLYANY 58 (224)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 34589999999999999999999874
No 465
>PRK10867 signal recognition particle protein; Provisional
Probab=96.63 E-value=0.024 Score=50.73 Aligned_cols=23 Identities=22% Similarity=0.354 Sum_probs=19.4
Q ss_pred CCeEEEEecCCCcHHHHHHHHhh
Q 029512 92 LPEIAFAGRSNVGKSSMLNALTR 114 (192)
Q Consensus 92 ~~~i~lvG~~n~GKStlin~L~~ 114 (192)
...|+++|.+|+||||+.-.|+.
T Consensus 100 p~vI~~vG~~GsGKTTtaakLA~ 122 (433)
T PRK10867 100 PTVIMMVGLQGAGKTTTAGKLAK 122 (433)
T ss_pred CEEEEEECCCCCcHHHHHHHHHH
Confidence 45789999999999998777764
No 466
>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional
Probab=96.63 E-value=0.0018 Score=53.78 Aligned_cols=26 Identities=27% Similarity=0.359 Sum_probs=23.0
Q ss_pred CCCeEEEEecCCCcHHHHHHHHhhcc
Q 029512 91 DLPEIAFAGRSNVGKSSMLNALTRQW 116 (192)
Q Consensus 91 ~~~~i~lvG~~n~GKStlin~L~~~~ 116 (192)
.+-.++|+|++|+|||||++.|+|..
T Consensus 36 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 61 (265)
T PRK10575 36 AGKVTGLIGHNGSGKSTLLKMLGRHQ 61 (265)
T ss_pred CCCEEEEECCCCCCHHHHHHHHcCCC
Confidence 34589999999999999999999863
No 467
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=96.63 E-value=0.0019 Score=53.25 Aligned_cols=24 Identities=21% Similarity=0.408 Sum_probs=22.1
Q ss_pred CCeEEEEecCCCcHHHHHHHHhhc
Q 029512 92 LPEIAFAGRSNVGKSSMLNALTRQ 115 (192)
Q Consensus 92 ~~~i~lvG~~n~GKStlin~L~~~ 115 (192)
+-.++|+|++|+|||||++.|+|.
T Consensus 25 Ge~~~i~G~NGsGKSTLlk~L~G~ 48 (246)
T cd03237 25 SEVIGILGPNGIGKTTFIKMLAGV 48 (246)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 458999999999999999999986
No 468
>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit. Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.
Probab=96.63 E-value=0.0019 Score=51.97 Aligned_cols=26 Identities=23% Similarity=0.332 Sum_probs=23.0
Q ss_pred CCCeEEEEecCCCcHHHHHHHHhhcc
Q 029512 91 DLPEIAFAGRSNVGKSSMLNALTRQW 116 (192)
Q Consensus 91 ~~~~i~lvG~~n~GKStlin~L~~~~ 116 (192)
.+-.++|+|++|+|||||++.|+|..
T Consensus 25 ~Ge~~~i~G~nGsGKSTLl~~l~G~~ 50 (223)
T TIGR03740 25 KNSVYGLLGPNGAGKSTLLKMITGIL 50 (223)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 35589999999999999999999963
No 469
>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=96.63 E-value=0.0019 Score=53.73 Aligned_cols=26 Identities=15% Similarity=0.132 Sum_probs=22.9
Q ss_pred CCCeEEEEecCCCcHHHHHHHHhhcc
Q 029512 91 DLPEIAFAGRSNVGKSSMLNALTRQW 116 (192)
Q Consensus 91 ~~~~i~lvG~~n~GKStlin~L~~~~ 116 (192)
.+-.++|+|++|+|||||++.|+|..
T Consensus 34 ~Ge~~~I~G~nGsGKSTLl~~i~Gl~ 59 (269)
T PRK13648 34 KGQWTSIVGHNGSGKSTIAKLMIGIE 59 (269)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 34589999999999999999999863
No 470
>PRK14235 phosphate transporter ATP-binding protein; Provisional
Probab=96.63 E-value=0.0019 Score=53.64 Aligned_cols=26 Identities=38% Similarity=0.509 Sum_probs=23.0
Q ss_pred CCCeEEEEecCCCcHHHHHHHHhhcc
Q 029512 91 DLPEIAFAGRSNVGKSSMLNALTRQW 116 (192)
Q Consensus 91 ~~~~i~lvG~~n~GKStlin~L~~~~ 116 (192)
.+-.++|+|++|+|||||++.|+|..
T Consensus 44 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 69 (267)
T PRK14235 44 EKTVTAFIGPSGCGKSTFLRCLNRMN 69 (267)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 45589999999999999999999963
No 471
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=96.62 E-value=0.002 Score=47.79 Aligned_cols=22 Identities=27% Similarity=0.493 Sum_probs=19.7
Q ss_pred eEEEEecCCCcHHHHHHHHhhc
Q 029512 94 EIAFAGRSNVGKSSMLNALTRQ 115 (192)
Q Consensus 94 ~i~lvG~~n~GKStlin~L~~~ 115 (192)
.|+++|+||+||||+...|...
T Consensus 1 lii~~G~pgsGKSt~a~~l~~~ 22 (143)
T PF13671_consen 1 LIILCGPPGSGKSTLAKRLAKR 22 (143)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 3789999999999999999954
No 472
>PRK14245 phosphate ABC transporter ATP-binding protein; Provisional
Probab=96.62 E-value=0.0019 Score=53.01 Aligned_cols=25 Identities=36% Similarity=0.581 Sum_probs=22.1
Q ss_pred CCCeEEEEecCCCcHHHHHHHHhhc
Q 029512 91 DLPEIAFAGRSNVGKSSMLNALTRQ 115 (192)
Q Consensus 91 ~~~~i~lvG~~n~GKStlin~L~~~ 115 (192)
.+-.++|+|++|+|||||++.|+|-
T Consensus 28 ~Ge~~~i~G~nGsGKSTLl~~i~Gl 52 (250)
T PRK14245 28 EKSVVAFIGPSGCGKSTFLRLFNRM 52 (250)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhhh
Confidence 3458999999999999999999874
No 473
>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.62 E-value=0.002 Score=52.18 Aligned_cols=26 Identities=31% Similarity=0.506 Sum_probs=22.9
Q ss_pred CCCeEEEEecCCCcHHHHHHHHhhcc
Q 029512 91 DLPEIAFAGRSNVGKSSMLNALTRQW 116 (192)
Q Consensus 91 ~~~~i~lvG~~n~GKStlin~L~~~~ 116 (192)
.+-.++|+|++|+|||||++.|+|..
T Consensus 27 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 52 (234)
T cd03251 27 AGETVALVGPSGSGKSTLVNLIPRFY 52 (234)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhccc
Confidence 34589999999999999999999863
No 474
>PRK14248 phosphate ABC transporter ATP-binding protein; Provisional
Probab=96.61 E-value=0.002 Score=53.56 Aligned_cols=25 Identities=32% Similarity=0.478 Sum_probs=22.3
Q ss_pred CCCeEEEEecCCCcHHHHHHHHhhc
Q 029512 91 DLPEIAFAGRSNVGKSSMLNALTRQ 115 (192)
Q Consensus 91 ~~~~i~lvG~~n~GKStlin~L~~~ 115 (192)
.+-.++|+|++|+|||||++.|+|.
T Consensus 46 ~Ge~~~i~G~nGsGKSTLl~~l~Gl 70 (268)
T PRK14248 46 KHAVTALIGPSGCGKSTFLRSINRM 70 (268)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhc
Confidence 3458999999999999999999984
No 475
>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=96.61 E-value=0.0018 Score=54.43 Aligned_cols=25 Identities=20% Similarity=0.214 Sum_probs=22.5
Q ss_pred CCeEEEEecCCCcHHHHHHHHhhcc
Q 029512 92 LPEIAFAGRSNVGKSSMLNALTRQW 116 (192)
Q Consensus 92 ~~~i~lvG~~n~GKStlin~L~~~~ 116 (192)
+-.++|+|++|+|||||++.|+|..
T Consensus 37 Ge~~~l~G~nGsGKSTLl~~l~Gl~ 61 (289)
T PRK13645 37 NKVTCVIGTTGSGKSTMIQLTNGLI 61 (289)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCC
Confidence 4489999999999999999999863
No 476
>cd03290 ABCC_SUR1_N The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=96.61 E-value=0.0021 Score=51.63 Aligned_cols=26 Identities=27% Similarity=0.277 Sum_probs=23.1
Q ss_pred CCCeEEEEecCCCcHHHHHHHHhhcc
Q 029512 91 DLPEIAFAGRSNVGKSSMLNALTRQW 116 (192)
Q Consensus 91 ~~~~i~lvG~~n~GKStlin~L~~~~ 116 (192)
.+-.++|+|++|+|||||++.|+|..
T Consensus 26 ~Ge~~~i~G~nGsGKSTLl~~i~G~~ 51 (218)
T cd03290 26 TGQLTMIVGQVGCGKSSLLLAILGEM 51 (218)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhccC
Confidence 35589999999999999999999964
No 477
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=96.60 E-value=0.0022 Score=50.43 Aligned_cols=25 Identities=32% Similarity=0.494 Sum_probs=21.9
Q ss_pred CCCeEEEEecCCCcHHHHHHHHhhc
Q 029512 91 DLPEIAFAGRSNVGKSSMLNALTRQ 115 (192)
Q Consensus 91 ~~~~i~lvG~~n~GKStlin~L~~~ 115 (192)
..+.++++|++|+|||||++.|...
T Consensus 5 ~~~ii~ivG~sgsGKTTLi~~li~~ 29 (173)
T PRK10751 5 MIPLLAIAAWSGTGKTTLLKKLIPA 29 (173)
T ss_pred CceEEEEECCCCChHHHHHHHHHHH
Confidence 3568999999999999999999854
No 478
>PRK14259 phosphate ABC transporter ATP-binding protein; Provisional
Probab=96.60 E-value=0.002 Score=53.70 Aligned_cols=25 Identities=36% Similarity=0.438 Sum_probs=22.6
Q ss_pred CCCeEEEEecCCCcHHHHHHHHhhc
Q 029512 91 DLPEIAFAGRSNVGKSSMLNALTRQ 115 (192)
Q Consensus 91 ~~~~i~lvG~~n~GKStlin~L~~~ 115 (192)
.+-.++|+|++|+|||||++.|+|.
T Consensus 38 ~Ge~~~l~G~nGsGKSTLl~~l~Gl 62 (269)
T PRK14259 38 RGKVTALIGPSGCGKSTVLRSLNRM 62 (269)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcc
Confidence 3558999999999999999999986
No 479
>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=96.60 E-value=0.002 Score=53.69 Aligned_cols=26 Identities=27% Similarity=0.322 Sum_probs=23.0
Q ss_pred CCCeEEEEecCCCcHHHHHHHHhhcc
Q 029512 91 DLPEIAFAGRSNVGKSSMLNALTRQW 116 (192)
Q Consensus 91 ~~~~i~lvG~~n~GKStlin~L~~~~ 116 (192)
.+-.++|+|++|+|||||++.|+|..
T Consensus 34 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 59 (271)
T PRK13632 34 EGEYVAILGHNGSGKSTISKILTGLL 59 (271)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 35589999999999999999999863
No 480
>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed
Probab=96.60 E-value=0.002 Score=53.20 Aligned_cols=26 Identities=15% Similarity=0.216 Sum_probs=23.0
Q ss_pred CCCeEEEEecCCCcHHHHHHHHhhcc
Q 029512 91 DLPEIAFAGRSNVGKSSMLNALTRQW 116 (192)
Q Consensus 91 ~~~~i~lvG~~n~GKStlin~L~~~~ 116 (192)
.+-.++|+|++|+|||||++.|+|..
T Consensus 29 ~Ge~~~I~G~NGsGKSTLl~~i~Gl~ 54 (251)
T PRK09544 29 PGKILTLLGPNGAGKSTLVRVVLGLV 54 (251)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 35589999999999999999999863
No 481
>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK. Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.
Probab=96.60 E-value=0.0019 Score=52.99 Aligned_cols=25 Identities=28% Similarity=0.425 Sum_probs=22.7
Q ss_pred CCeEEEEecCCCcHHHHHHHHhhcc
Q 029512 92 LPEIAFAGRSNVGKSSMLNALTRQW 116 (192)
Q Consensus 92 ~~~i~lvG~~n~GKStlin~L~~~~ 116 (192)
+-.++|+|++|+|||||++.|+|..
T Consensus 29 Ge~~~i~G~nGsGKSTLl~~l~G~~ 53 (253)
T TIGR02323 29 GEVLGIVGESGSGKSTLLGCLAGRL 53 (253)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCC
Confidence 4589999999999999999999974
No 482
>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.60 E-value=0.0021 Score=52.14 Aligned_cols=26 Identities=35% Similarity=0.474 Sum_probs=23.0
Q ss_pred CCCeEEEEecCCCcHHHHHHHHhhcc
Q 029512 91 DLPEIAFAGRSNVGKSSMLNALTRQW 116 (192)
Q Consensus 91 ~~~~i~lvG~~n~GKStlin~L~~~~ 116 (192)
.+-.++|+|++|+|||||++.|+|..
T Consensus 26 ~Ge~~~l~G~nGsGKSTLl~~i~Gl~ 51 (236)
T cd03253 26 AGKKVAIVGPSGSGKSTILRLLFRFY 51 (236)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhccc
Confidence 34589999999999999999999864
No 483
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.60 E-value=0.0019 Score=50.96 Aligned_cols=25 Identities=28% Similarity=0.428 Sum_probs=22.3
Q ss_pred CCCeEEEEecCCCcHHHHHHHHhhc
Q 029512 91 DLPEIAFAGRSNVGKSSMLNALTRQ 115 (192)
Q Consensus 91 ~~~~i~lvG~~n~GKStlin~L~~~ 115 (192)
.+-.++|+|++|+|||||++.|.|.
T Consensus 32 ~Ge~~~l~G~nGsGKSTLl~~l~G~ 56 (192)
T cd03232 32 PGTLTALMGESGAGKTTLLDVLAGR 56 (192)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCC
Confidence 3458999999999999999999984
No 484
>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional
Probab=96.60 E-value=0.002 Score=53.22 Aligned_cols=26 Identities=31% Similarity=0.475 Sum_probs=23.1
Q ss_pred CCCeEEEEecCCCcHHHHHHHHhhcc
Q 029512 91 DLPEIAFAGRSNVGKSSMLNALTRQW 116 (192)
Q Consensus 91 ~~~~i~lvG~~n~GKStlin~L~~~~ 116 (192)
.+-.++|+|++|+|||||++.|+|..
T Consensus 31 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 56 (258)
T PRK11701 31 PGEVLGIVGESGSGKTTLLNALSARL 56 (258)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 35589999999999999999999963
No 485
>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein. This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.
Probab=96.60 E-value=0.002 Score=51.62 Aligned_cols=26 Identities=35% Similarity=0.414 Sum_probs=23.2
Q ss_pred CCCeEEEEecCCCcHHHHHHHHhhcc
Q 029512 91 DLPEIAFAGRSNVGKSSMLNALTRQW 116 (192)
Q Consensus 91 ~~~~i~lvG~~n~GKStlin~L~~~~ 116 (192)
.+-.++|+|++|+|||||++.|+|..
T Consensus 23 ~Ge~~~i~G~nGsGKSTLl~~l~G~~ 48 (213)
T TIGR01277 23 DGEIVAIMGPSGAGKSTLLNLIAGFI 48 (213)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcCC
Confidence 45589999999999999999999863
No 486
>PRK13547 hmuV hemin importer ATP-binding subunit; Provisional
Probab=96.59 E-value=0.002 Score=53.92 Aligned_cols=26 Identities=35% Similarity=0.446 Sum_probs=22.9
Q ss_pred CCCeEEEEecCCCcHHHHHHHHhhcc
Q 029512 91 DLPEIAFAGRSNVGKSSMLNALTRQW 116 (192)
Q Consensus 91 ~~~~i~lvG~~n~GKStlin~L~~~~ 116 (192)
.+-.++|+|++|+|||||++.|.|..
T Consensus 26 ~Ge~~~l~G~nGsGKSTLl~~laG~~ 51 (272)
T PRK13547 26 PGRVTALLGRNGAGKSTLLKALAGDL 51 (272)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 34589999999999999999999863
No 487
>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed
Probab=96.59 E-value=0.0021 Score=52.38 Aligned_cols=26 Identities=23% Similarity=0.335 Sum_probs=23.0
Q ss_pred CCCeEEEEecCCCcHHHHHHHHhhcc
Q 029512 91 DLPEIAFAGRSNVGKSSMLNALTRQW 116 (192)
Q Consensus 91 ~~~~i~lvG~~n~GKStlin~L~~~~ 116 (192)
.+-.++|+|++|+|||||++.|+|..
T Consensus 26 ~Ge~~~l~G~nGsGKSTLl~~l~G~~ 51 (240)
T PRK09493 26 QGEVVVIIGPSGSGKSTLLRCINKLE 51 (240)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 34589999999999999999999863
No 488
>PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional
Probab=96.59 E-value=0.002 Score=53.02 Aligned_cols=25 Identities=28% Similarity=0.396 Sum_probs=22.4
Q ss_pred CCCeEEEEecCCCcHHHHHHHHhhc
Q 029512 91 DLPEIAFAGRSNVGKSSMLNALTRQ 115 (192)
Q Consensus 91 ~~~~i~lvG~~n~GKStlin~L~~~ 115 (192)
.+-.++|+|++|+|||||++.|+|.
T Consensus 27 ~Ge~~~l~G~nGsGKSTLl~~l~Gl 51 (255)
T PRK11231 27 TGKITALIGPNGCGKSTLLKCFARL 51 (255)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCC
Confidence 3458899999999999999999986
No 489
>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=96.59 E-value=0.002 Score=54.18 Aligned_cols=26 Identities=19% Similarity=0.321 Sum_probs=22.9
Q ss_pred CCCeEEEEecCCCcHHHHHHHHhhcc
Q 029512 91 DLPEIAFAGRSNVGKSSMLNALTRQW 116 (192)
Q Consensus 91 ~~~~i~lvG~~n~GKStlin~L~~~~ 116 (192)
.+-.++|+|++|+|||||++.|+|..
T Consensus 32 ~Ge~~~i~G~nGsGKSTLl~~L~Gl~ 57 (286)
T PRK13646 32 QGKYYAIVGQTGSGKSTLIQNINALL 57 (286)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 34589999999999999999999863
No 490
>PF02263 GBP: Guanylate-binding protein, N-terminal domain; InterPro: IPR015894 Guanylate-binding protein is a GTPase that is induced by interferon (IFN)-gamma. GTPases induced by IFN-gamma are key to the protective immunity against microbial and viral pathogens. These GTPases are classified into three groups: the small 47-kd GTPases, the Mx proteins, and the large 65- to 67-kd GTPases. Guanylate-binding proteins (GBP) fall into the last class. In humans, there are seven GBPs (hGBP1-7) []. Structurally, hGBP1 consists of two domains: a compact globular N-terminal domain harbouring the GTPase function, and an alpha-helical finger-like C-terminal domain (IPR003191 from INTERPRO). Human GBP1 is secreted from cells without the need of a leader peptide, and has been shown to exhibit antiviral activity against Vesicular stomatitis virus and Encephalomyocarditis virus, as well as being able to regulate the inhibition of proliferation and invasion of endothelial cells in response to IFN-gamma [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3QOF_A 3Q5E_C 3QNU_A 3Q5D_A 1DG3_A 2D4H_A 2B8W_B 2B92_A 2BC9_A 1F5N_A.
Probab=96.59 E-value=0.0034 Score=52.24 Aligned_cols=60 Identities=22% Similarity=0.217 Sum_probs=40.2
Q ss_pred CCCeEEEEecCCCcHHHHHHHHhhccCceeecC-CCCceeEEEEEe------eCCeEEEEECCCCCC
Q 029512 91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSD-KPGLTQTINFFK------LGTKLCLVDLPGYGF 150 (192)
Q Consensus 91 ~~~~i~lvG~~n~GKStlin~L~~~~~~~~~~~-~~g~T~~~~~~~------~~~~~~lvDtPG~~~ 150 (192)
+...|.++|...+|||.|+|.|++...--..++ ...+|+-.-... .+..+.++||.|+++
T Consensus 20 ~v~vvsi~G~~rtGKSfLln~l~~~~~gF~~~~~~~~~T~Giw~w~~~~~~~~~~~v~llDteG~~~ 86 (260)
T PF02263_consen 20 PVAVVSIVGPYRTGKSFLLNQLLGPQSGFSWGPTVEPCTKGIWMWSEPLPDGEKVAVVLLDTEGLGD 86 (260)
T ss_dssp BEEEEEEEEETTSSHHHHHHHHCCBSSSSESSSCSSST-SCEEEECCE-TTSTCEEEEEEEEECBTT
T ss_pred CEEEEEeecCCccchHHHHHHHhcccccccccCCCCCCCcceeeeecccccccceeEEEecchhccc
Confidence 455889999999999999999998532112222 224555432111 245799999999977
No 491
>PRK14251 phosphate ABC transporter ATP-binding protein; Provisional
Probab=96.59 E-value=0.0021 Score=52.67 Aligned_cols=25 Identities=36% Similarity=0.407 Sum_probs=22.4
Q ss_pred CCeEEEEecCCCcHHHHHHHHhhcc
Q 029512 92 LPEIAFAGRSNVGKSSMLNALTRQW 116 (192)
Q Consensus 92 ~~~i~lvG~~n~GKStlin~L~~~~ 116 (192)
+-.++|+|++|+|||||++.|+|..
T Consensus 30 Ge~~~i~G~nGsGKSTLl~~l~Gl~ 54 (251)
T PRK14251 30 KELTALIGPSGCGKSTFLRCLNRMN 54 (251)
T ss_pred CCEEEEECCCCCCHHHHHHHHhhcc
Confidence 4489999999999999999999963
No 492
>PRK07261 topology modulation protein; Provisional
Probab=96.58 E-value=0.002 Score=50.18 Aligned_cols=22 Identities=36% Similarity=0.567 Sum_probs=20.3
Q ss_pred eEEEEecCCCcHHHHHHHHhhc
Q 029512 94 EIAFAGRSNVGKSSMLNALTRQ 115 (192)
Q Consensus 94 ~i~lvG~~n~GKStlin~L~~~ 115 (192)
+|+++|.||+|||||...|...
T Consensus 2 ri~i~G~~GsGKSTla~~l~~~ 23 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQH 23 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHHH
Confidence 6899999999999999999865
No 493
>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=96.58 E-value=0.0017 Score=53.46 Aligned_cols=24 Identities=33% Similarity=0.429 Sum_probs=21.7
Q ss_pred CCeEEEEecCCCcHHHHHHHHhhc
Q 029512 92 LPEIAFAGRSNVGKSSMLNALTRQ 115 (192)
Q Consensus 92 ~~~i~lvG~~n~GKStlin~L~~~ 115 (192)
+--|+++|++|+|||||+..|.+.
T Consensus 30 GE~VaiIG~SGaGKSTLLR~lngl 53 (258)
T COG3638 30 GEMVAIIGPSGAGKSTLLRSLNGL 53 (258)
T ss_pred CcEEEEECCCCCcHHHHHHHHhcc
Confidence 448999999999999999999985
No 494
>TIGR02769 nickel_nikE nickel import ATP-binding protein NikE. This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase.
Probab=96.58 E-value=0.0021 Score=53.35 Aligned_cols=26 Identities=27% Similarity=0.335 Sum_probs=23.2
Q ss_pred CCCeEEEEecCCCcHHHHHHHHhhcc
Q 029512 91 DLPEIAFAGRSNVGKSSMLNALTRQW 116 (192)
Q Consensus 91 ~~~~i~lvG~~n~GKStlin~L~~~~ 116 (192)
.+-.++|+|++|+|||||++.|+|..
T Consensus 36 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 61 (265)
T TIGR02769 36 EGETVGLLGRSGCGKSTLARLLLGLE 61 (265)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 35589999999999999999999964
No 495
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=96.58 E-value=0.0022 Score=52.19 Aligned_cols=24 Identities=29% Similarity=0.375 Sum_probs=21.6
Q ss_pred CCeEEEEecCCCcHHHHHHHHhhc
Q 029512 92 LPEIAFAGRSNVGKSSMLNALTRQ 115 (192)
Q Consensus 92 ~~~i~lvG~~n~GKStlin~L~~~ 115 (192)
+-.++++|+||+|||||++.|-+-
T Consensus 28 Gevv~iiGpSGSGKSTlLRclN~L 51 (240)
T COG1126 28 GEVVVIIGPSGSGKSTLLRCLNGL 51 (240)
T ss_pred CCEEEEECCCCCCHHHHHHHHHCC
Confidence 458999999999999999999875
No 496
>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.
Probab=96.58 E-value=0.0021 Score=52.00 Aligned_cols=26 Identities=31% Similarity=0.498 Sum_probs=23.0
Q ss_pred CCCeEEEEecCCCcHHHHHHHHhhcc
Q 029512 91 DLPEIAFAGRSNVGKSSMLNALTRQW 116 (192)
Q Consensus 91 ~~~~i~lvG~~n~GKStlin~L~~~~ 116 (192)
.+-.++|+|++|+|||||++.|+|..
T Consensus 47 ~Ge~~~i~G~nGsGKSTLl~~l~G~~ 72 (224)
T cd03220 47 RGERIGLIGRNGAGKSTLLRLLAGIY 72 (224)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 45589999999999999999999863
No 497
>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.
Probab=96.58 E-value=0.0021 Score=54.55 Aligned_cols=26 Identities=19% Similarity=0.188 Sum_probs=22.9
Q ss_pred CCCeEEEEecCCCcHHHHHHHHhhcc
Q 029512 91 DLPEIAFAGRSNVGKSSMLNALTRQW 116 (192)
Q Consensus 91 ~~~~i~lvG~~n~GKStlin~L~~~~ 116 (192)
.+-.++|+|++|+|||||++.|+|..
T Consensus 29 ~Ge~~~l~G~NGaGKSTLl~~l~Gl~ 54 (303)
T TIGR01288 29 RGECFGLLGPNGAGKSTIARMLLGMI 54 (303)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 34589999999999999999999863
No 498
>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=96.58 E-value=0.002 Score=53.81 Aligned_cols=25 Identities=28% Similarity=0.385 Sum_probs=22.4
Q ss_pred CCeEEEEecCCCcHHHHHHHHhhcc
Q 029512 92 LPEIAFAGRSNVGKSSMLNALTRQW 116 (192)
Q Consensus 92 ~~~i~lvG~~n~GKStlin~L~~~~ 116 (192)
+-.++|+|++|+|||||++.|+|..
T Consensus 33 Ge~~~l~G~nGsGKSTLl~~i~Gl~ 57 (280)
T PRK13649 33 GSYTAFIGHTGSGKSTIMQLLNGLH 57 (280)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCC
Confidence 4488999999999999999999863
No 499
>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=96.57 E-value=0.0023 Score=51.40 Aligned_cols=25 Identities=40% Similarity=0.480 Sum_probs=22.5
Q ss_pred CCeEEEEecCCCcHHHHHHHHhhcc
Q 029512 92 LPEIAFAGRSNVGKSSMLNALTRQW 116 (192)
Q Consensus 92 ~~~i~lvG~~n~GKStlin~L~~~~ 116 (192)
+-.++|+|++|+|||||++.|+|..
T Consensus 30 Ge~~~i~G~nGsGKSTLl~~l~G~~ 54 (221)
T cd03244 30 GEKVGIVGRTGSGKSSLLLALFRLV 54 (221)
T ss_pred CCEEEEECCCCCCHHHHHHHHHcCC
Confidence 4589999999999999999999863
No 500
>COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=96.57 E-value=0.0021 Score=58.32 Aligned_cols=26 Identities=38% Similarity=0.677 Sum_probs=23.2
Q ss_pred CCCeEEEEecCCCcHHHHHHHHhhcc
Q 029512 91 DLPEIAFAGRSNVGKSSMLNALTRQW 116 (192)
Q Consensus 91 ~~~~i~lvG~~n~GKStlin~L~~~~ 116 (192)
.+-+|+|+|+||+|||||++.|+|.+
T Consensus 363 ~GEkvAIlG~SGsGKSTllqLl~~~~ 388 (573)
T COG4987 363 QGEKVAILGRSGSGKSTLLQLLAGAW 388 (573)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHhcc
Confidence 35599999999999999999999854
Done!