Query 029512
Match_columns 192
No_of_seqs 207 out of 2497
Neff 7.7
Searched_HMMs 29240
Date Mon Mar 25 23:17:39 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029512.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/029512hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3gee_A MNME, tRNA modification 99.7 1.6E-17 5.4E-22 147.6 4.2 157 21-186 167-326 (476)
2 4a9a_A Ribosome-interacting GT 99.7 9.2E-17 3.2E-21 138.8 7.4 91 88-185 68-162 (376)
3 1svi_A GTP-binding protein YSX 99.6 9.7E-16 3.3E-20 118.4 9.8 101 85-185 16-118 (195)
4 4dhe_A Probable GTP-binding pr 99.6 1.5E-15 5E-20 120.0 10.3 100 86-185 23-128 (223)
5 3pqc_A Probable GTP-binding pr 99.6 7E-15 2.4E-19 113.0 12.9 100 85-185 16-117 (195)
6 2qtf_A Protein HFLX, GTP-bindi 99.6 2.2E-15 7.4E-20 129.7 7.0 161 15-186 104-271 (364)
7 3geh_A MNME, tRNA modification 99.5 8E-16 2.7E-20 136.2 0.5 155 20-185 158-316 (462)
8 1xzp_A Probable tRNA modificat 99.5 1.6E-15 5.4E-20 134.9 -0.1 139 33-186 189-337 (482)
9 3iby_A Ferrous iron transport 99.5 1.2E-13 3.9E-18 113.3 10.2 88 93-185 2-96 (256)
10 3iev_A GTP-binding protein ERA 99.5 1.4E-13 4.9E-18 115.5 8.5 94 90-185 8-105 (308)
11 1wf3_A GTP-binding protein; GT 99.5 3.6E-13 1.2E-17 112.8 10.9 89 93-185 8-99 (301)
12 3i8s_A Ferrous iron transport 99.5 2.2E-13 7.4E-18 112.5 9.4 89 92-185 3-98 (274)
13 1mky_A Probable GTP-binding pr 99.4 2E-13 6.9E-18 119.7 9.1 87 93-185 2-94 (439)
14 3lxx_A GTPase IMAP family memb 99.4 4.8E-13 1.7E-17 107.5 9.4 92 90-184 27-124 (239)
15 2gj8_A MNME, tRNA modification 99.4 1.7E-12 5.8E-17 99.2 10.7 91 92-186 4-97 (172)
16 1puj_A YLQF, conserved hypothe 99.4 5.2E-13 1.8E-17 111.0 7.6 61 91-152 119-179 (282)
17 3a1s_A Iron(II) transport prot 99.4 1.8E-12 6.3E-17 106.2 10.6 88 92-186 5-97 (258)
18 3lxw_A GTPase IMAP family memb 99.4 1.1E-12 3.8E-17 106.6 9.0 92 91-184 20-117 (247)
19 1pui_A ENGB, probable GTP-bind 99.4 6.8E-13 2.3E-17 103.7 7.4 99 87-185 21-121 (210)
20 3k53_A Ferrous iron transport 99.4 2.8E-12 9.4E-17 105.3 11.0 89 92-185 3-94 (271)
21 3b1v_A Ferrous iron uptake tra 99.4 1.8E-12 6.3E-17 107.1 9.7 89 92-185 3-93 (272)
22 2hjg_A GTP-binding protein ENG 99.4 6.2E-13 2.1E-17 116.5 7.2 90 92-185 3-95 (436)
23 1wxq_A GTP-binding protein; st 99.4 4.5E-13 1.6E-17 116.4 6.3 86 93-185 1-114 (397)
24 1jal_A YCHF protein; nucleotid 99.4 1.2E-13 4.1E-18 118.8 2.4 91 93-190 3-114 (363)
25 4dcu_A GTP-binding protein ENG 99.4 8.4E-13 2.9E-17 116.2 7.8 88 91-184 22-114 (456)
26 2qu8_A Putative nucleolar GTP- 99.4 3.2E-12 1.1E-16 101.7 9.8 92 90-185 27-121 (228)
27 2ohf_A Protein OLA1, GTP-bindi 99.3 3.7E-13 1.3E-17 116.9 4.1 92 91-189 21-133 (396)
28 2xtp_A GTPase IMAP family memb 99.3 3.7E-12 1.3E-16 103.4 9.6 92 91-184 21-117 (260)
29 2dyk_A GTP-binding protein; GT 99.3 4.8E-12 1.7E-16 94.1 8.9 87 93-185 2-92 (161)
30 2hjg_A GTP-binding protein ENG 99.3 3.2E-13 1.1E-17 118.3 2.5 94 91-185 174-270 (436)
31 2dby_A GTP-binding protein; GD 99.3 7E-13 2.4E-17 114.2 4.4 90 93-189 2-116 (368)
32 2cxx_A Probable GTP-binding pr 99.3 8.9E-12 3.1E-16 95.2 9.9 89 93-184 2-94 (190)
33 1h65_A Chloroplast outer envel 99.3 6.8E-12 2.3E-16 102.9 8.6 88 92-183 39-130 (270)
34 3h2y_A GTPase family protein; 99.3 6.1E-12 2.1E-16 108.2 8.2 88 93-182 161-254 (368)
35 1ega_A Protein (GTP-binding pr 99.3 1.1E-11 3.8E-16 103.6 9.5 87 93-184 9-100 (301)
36 2wjg_A FEOB, ferrous iron tran 99.3 2.3E-11 7.8E-16 93.0 10.2 88 92-184 7-97 (188)
37 3ec1_A YQEH GTPase; atnos1, at 99.3 4.1E-12 1.4E-16 109.3 6.4 90 92-183 162-256 (369)
38 2wji_A Ferrous iron transport 99.3 1.4E-11 4.7E-16 93.1 8.6 88 93-185 4-94 (165)
39 3def_A T7I23.11 protein; chlor 99.3 1.3E-11 4.6E-16 100.8 9.0 89 92-184 36-128 (262)
40 1jwy_B Dynamin A GTPase domain 99.3 5.3E-11 1.8E-15 98.9 12.7 27 90-116 22-48 (315)
41 2aka_B Dynamin-1; fusion prote 99.2 3.9E-11 1.3E-15 98.8 11.0 28 89-116 23-50 (299)
42 4dcu_A GTP-binding protein ENG 99.2 3.8E-12 1.3E-16 112.0 4.5 94 90-184 193-289 (456)
43 1ni3_A YCHF GTPase, YCHF GTP-b 99.2 2E-12 6.9E-17 112.2 2.6 89 91-185 19-128 (392)
44 1fzq_A ADP-ribosylation factor 99.2 3.6E-11 1.2E-15 92.2 8.8 83 91-186 15-97 (181)
45 1ek0_A Protein (GTP-binding pr 99.2 3.8E-11 1.3E-15 89.6 8.5 83 93-186 4-89 (170)
46 3q72_A GTP-binding protein RAD 99.2 3E-11 1E-15 90.3 7.6 83 92-186 2-86 (166)
47 1z0j_A RAB-22, RAS-related pro 99.2 3.4E-11 1.2E-15 90.0 7.9 84 92-186 6-92 (170)
48 3cnl_A YLQF, putative uncharac 99.2 6E-12 2.1E-16 103.5 4.0 59 93-152 100-158 (262)
49 1lnz_A SPO0B-associated GTP-bi 99.2 3.6E-12 1.2E-16 108.7 2.7 86 92-184 158-248 (342)
50 3t5d_A Septin-7; GTP-binding p 99.2 2.7E-11 9.4E-16 99.5 7.9 60 91-151 7-78 (274)
51 1mky_A Probable GTP-binding pr 99.2 5.3E-12 1.8E-16 110.6 3.8 93 91-184 179-275 (439)
52 2e87_A Hypothetical protein PH 99.2 9.1E-11 3.1E-15 100.1 11.3 90 90-185 165-259 (357)
53 1upt_A ARL1, ADP-ribosylation 99.2 6.2E-11 2.1E-15 88.9 9.0 83 91-186 6-88 (171)
54 1z0f_A RAB14, member RAS oncog 99.2 6.5E-11 2.2E-15 89.2 9.2 83 92-185 15-100 (179)
55 2h17_A ADP-ribosylation factor 99.2 7.2E-11 2.5E-15 90.2 8.9 82 91-185 20-101 (181)
56 4bas_A ADP-ribosylation factor 99.2 5.9E-11 2E-15 91.4 8.1 84 90-186 15-100 (199)
57 1z06_A RAS-related protein RAB 99.2 1.2E-10 4.1E-15 89.5 9.7 84 91-185 19-106 (189)
58 3t5g_A GTP-binding protein RHE 99.2 8.3E-11 2.8E-15 89.4 8.7 84 91-185 5-90 (181)
59 2nzj_A GTP-binding protein REM 99.2 7.7E-11 2.6E-15 88.6 8.4 85 92-186 4-91 (175)
60 1moz_A ARL1, ADP-ribosylation 99.2 9.6E-11 3.3E-15 89.0 8.9 82 91-185 17-98 (183)
61 2il1_A RAB12; G-protein, GDP, 99.2 7.5E-11 2.6E-15 91.2 8.4 85 91-186 25-112 (192)
62 1r2q_A RAS-related protein RAB 99.2 9.1E-11 3.1E-15 87.5 8.5 84 92-186 6-92 (170)
63 1r8s_A ADP-ribosylation factor 99.2 1.3E-10 4.5E-15 86.6 9.4 81 93-186 1-81 (164)
64 1wms_A RAB-9, RAB9, RAS-relate 99.2 1.1E-10 3.6E-15 88.2 8.9 85 91-186 6-93 (177)
65 1zj6_A ADP-ribosylation factor 99.2 1.3E-10 4.5E-15 89.1 9.3 83 91-186 15-97 (187)
66 1u8z_A RAS-related protein RAL 99.2 1.6E-10 5.5E-15 85.9 9.4 81 92-186 4-89 (168)
67 1ksh_A ARF-like protein 2; sma 99.2 1.2E-10 4.1E-15 89.0 8.8 83 91-186 17-99 (186)
68 2fg5_A RAB-22B, RAS-related pr 99.2 7E-11 2.4E-15 91.2 7.5 84 92-186 23-109 (192)
69 3clv_A RAB5 protein, putative; 99.2 1.3E-10 4.3E-15 89.1 8.8 26 91-116 6-31 (208)
70 1zd9_A ADP-ribosylation factor 99.1 1.8E-10 6.2E-15 88.6 9.7 83 92-186 22-104 (188)
71 2oil_A CATX-8, RAS-related pro 99.1 1.3E-10 4.3E-15 89.5 8.8 84 92-186 25-111 (193)
72 2lkc_A Translation initiation 99.1 4.1E-11 1.4E-15 90.6 5.9 82 90-184 6-90 (178)
73 2x2e_A Dynamin-1; nitration, h 99.1 1.4E-10 4.9E-15 98.7 9.9 26 91-116 30-55 (353)
74 1kao_A RAP2A; GTP-binding prot 99.1 1.5E-10 5E-15 86.0 8.7 80 93-186 4-88 (167)
75 1m2o_B GTP-binding protein SAR 99.1 2.2E-10 7.4E-15 88.6 10.0 82 92-186 23-104 (190)
76 2x77_A ADP-ribosylation factor 99.1 1.3E-10 4.5E-15 89.1 8.6 83 91-186 21-103 (189)
77 2gf9_A RAS-related protein RAB 99.1 3.2E-10 1.1E-14 87.0 10.8 83 92-185 22-107 (189)
78 3tw8_B RAS-related protein RAB 99.1 1.1E-10 3.9E-15 88.0 8.0 83 91-186 8-95 (181)
79 2bme_A RAB4A, RAS-related prot 99.1 1.6E-10 5.6E-15 87.9 8.7 82 92-186 10-96 (186)
80 3tkl_A RAS-related protein RAB 99.1 1.2E-10 4E-15 89.5 8.0 82 92-186 16-102 (196)
81 2p5s_A RAS and EF-hand domain 99.1 1.2E-10 4.2E-15 90.3 8.1 84 91-185 27-113 (199)
82 2bov_A RAla, RAS-related prote 99.1 1.2E-10 4.2E-15 90.1 8.1 82 90-185 12-98 (206)
83 2y8e_A RAB-protein 6, GH09086P 99.1 1.6E-10 5.6E-15 87.0 8.3 81 92-185 14-99 (179)
84 1z08_A RAS-related protein RAB 99.1 3E-10 1E-14 84.9 9.6 84 92-186 6-92 (170)
85 1ky3_A GTP-binding protein YPT 99.1 8.9E-11 3E-15 88.7 6.7 85 91-186 7-95 (182)
86 1zbd_A Rabphilin-3A; G protein 99.1 2.2E-10 7.5E-15 88.8 9.1 84 92-186 8-94 (203)
87 2efe_B Small GTP-binding prote 99.1 1.7E-10 5.8E-15 87.3 8.1 84 92-186 12-98 (181)
88 3r7w_A Gtpase1, GTP-binding pr 99.1 8.4E-11 2.9E-15 98.4 6.8 87 92-186 3-94 (307)
89 1f6b_A SAR1; gtpases, N-termin 99.1 2.2E-10 7.6E-15 89.2 8.6 82 92-186 25-106 (198)
90 1x3s_A RAS-related protein RAB 99.1 2.5E-10 8.7E-15 87.4 8.8 83 92-185 15-100 (195)
91 2fn4_A P23, RAS-related protei 99.1 2.4E-10 8.1E-15 86.3 8.5 82 90-185 7-93 (181)
92 2bcg_Y Protein YP2, GTP-bindin 99.1 3.2E-10 1.1E-14 88.2 9.5 84 92-186 8-94 (206)
93 1g16_A RAS-related protein SEC 99.1 1.9E-10 6.5E-15 85.9 7.8 80 93-185 4-88 (170)
94 2h57_A ADP-ribosylation factor 99.1 1.9E-10 6.6E-15 88.3 8.0 83 91-185 20-103 (190)
95 1z2a_A RAS-related protein RAB 99.1 2.4E-10 8.1E-15 85.3 8.2 84 92-186 5-91 (168)
96 3bc1_A RAS-related protein RAB 99.1 3.8E-10 1.3E-14 86.0 9.5 84 92-186 11-107 (195)
97 2erx_A GTP-binding protein DI- 99.1 2.1E-10 7.1E-15 85.7 7.8 84 92-186 3-88 (172)
98 3cph_A RAS-related protein SEC 99.1 1.8E-10 6.2E-15 89.7 7.7 82 91-185 19-105 (213)
99 1vg8_A RAS-related protein RAB 99.1 2.9E-10 9.9E-15 88.1 8.8 83 91-186 7-94 (207)
100 2qpt_A EH domain-containing pr 99.1 3.1E-10 1.1E-14 102.3 10.3 90 90-185 63-201 (550)
101 2atv_A RERG, RAS-like estrogen 99.1 4.1E-10 1.4E-14 87.0 9.6 83 91-186 27-112 (196)
102 2a9k_A RAS-related protein RAL 99.1 3.3E-10 1.1E-14 85.9 8.7 82 91-186 17-103 (187)
103 2gf0_A GTP-binding protein DI- 99.1 3.3E-10 1.1E-14 87.1 8.8 84 91-185 7-92 (199)
104 2b6h_A ADP-ribosylation factor 99.1 2.6E-10 9.1E-15 88.3 8.3 84 90-186 27-110 (192)
105 3dz8_A RAS-related protein RAB 99.1 1.1E-10 3.7E-15 90.0 6.0 84 91-185 22-108 (191)
106 4dsu_A GTPase KRAS, isoform 2B 99.1 2.7E-10 9.4E-15 86.6 8.2 80 92-185 4-88 (189)
107 2fh5_B SR-beta, signal recogni 99.1 8.6E-10 3E-14 86.2 11.2 80 91-184 6-90 (214)
108 2hxs_A RAB-26, RAS-related pro 99.1 2.9E-10 1E-14 85.8 8.0 84 92-186 6-93 (178)
109 2g6b_A RAS-related protein RAB 99.1 3.4E-10 1.2E-14 85.6 8.4 83 92-186 10-97 (180)
110 1c1y_A RAS-related protein RAP 99.1 3.8E-10 1.3E-14 84.0 8.1 79 93-185 4-87 (167)
111 2ew1_A RAS-related protein RAB 99.1 6.7E-10 2.3E-14 87.0 9.8 82 92-186 26-112 (201)
112 2hup_A RAS-related protein RAB 99.1 5.5E-10 1.9E-14 87.0 9.2 84 92-186 29-115 (201)
113 2a5j_A RAS-related protein RAB 99.1 3.5E-10 1.2E-14 87.1 7.8 84 92-186 21-107 (191)
114 1mh1_A RAC1; GTP-binding, GTPa 99.1 6.4E-10 2.2E-14 84.3 9.0 84 92-186 5-90 (186)
115 2o52_A RAS-related protein RAB 99.1 3E-10 1E-14 88.4 7.0 84 92-186 25-111 (200)
116 4djt_A GTP-binding nuclear pro 99.1 1.9E-10 6.3E-15 90.3 5.9 84 91-185 10-97 (218)
117 2fv8_A H6, RHO-related GTP-bin 99.0 1.1E-09 3.6E-14 85.6 10.0 84 92-186 25-110 (207)
118 3oes_A GTPase rhebl1; small GT 99.0 4.9E-10 1.7E-14 87.0 8.0 82 90-185 22-108 (201)
119 3cpj_B GTP-binding protein YPT 99.0 7.1E-10 2.4E-14 87.7 9.0 83 92-185 13-98 (223)
120 2q3h_A RAS homolog gene family 99.0 9.4E-10 3.2E-14 85.1 9.5 82 91-186 19-105 (201)
121 3t34_A Dynamin-related protein 99.0 5.6E-10 1.9E-14 95.2 8.9 25 91-115 33-57 (360)
122 3reg_A RHO-like small GTPase; 99.0 7.4E-10 2.5E-14 85.3 8.7 84 92-186 23-108 (194)
123 2f7s_A C25KG, RAS-related prot 99.0 6E-10 2.1E-14 87.3 8.2 84 92-186 25-121 (217)
124 2j69_A Bacterial dynamin-like 99.0 2.8E-10 9.4E-15 105.2 7.2 35 92-127 69-103 (695)
125 3con_A GTPase NRAS; structural 99.0 7.8E-10 2.7E-14 84.6 8.6 80 92-185 21-105 (190)
126 3kkq_A RAS-related protein M-R 99.0 4.4E-10 1.5E-14 85.4 7.1 81 91-185 17-102 (183)
127 2ged_A SR-beta, signal recogni 99.0 4.8E-10 1.7E-14 86.0 7.4 83 90-183 46-129 (193)
128 2atx_A Small GTP binding prote 99.0 1.1E-09 3.8E-14 84.2 9.4 82 91-186 17-103 (194)
129 4gzl_A RAS-related C3 botulinu 99.0 8.4E-10 2.9E-14 86.2 8.8 82 91-186 29-115 (204)
130 2ce2_X GTPase HRAS; signaling 99.0 6.8E-10 2.3E-14 82.1 7.8 80 93-186 4-88 (166)
131 2iwr_A Centaurin gamma 1; ANK 99.0 5.3E-10 1.8E-14 84.6 7.2 78 92-186 7-86 (178)
132 2j1l_A RHO-related GTP-binding 99.0 9E-10 3.1E-14 86.7 8.8 81 92-186 34-119 (214)
133 3gj0_A GTP-binding nuclear pro 99.0 2.4E-10 8.1E-15 90.1 5.4 84 91-185 14-100 (221)
134 3zvr_A Dynamin-1; hydrolase, D 99.0 1.3E-09 4.4E-14 101.5 11.0 93 91-185 50-200 (772)
135 2j0v_A RAC-like GTP-binding pr 99.0 1.7E-09 5.8E-14 84.4 9.8 85 91-186 8-94 (212)
136 3q85_A GTP-binding protein REM 99.0 5.9E-10 2E-14 83.4 6.6 82 93-186 3-89 (169)
137 3q3j_B RHO-related GTP-binding 99.0 1.4E-09 4.9E-14 85.7 8.6 85 91-186 26-112 (214)
138 2www_A Methylmalonic aciduria 99.0 2.9E-10 1E-14 97.0 4.9 25 90-114 72-96 (349)
139 3qq5_A Small GTP-binding prote 99.0 1.1E-10 3.6E-15 102.3 2.1 88 89-183 31-124 (423)
140 2gco_A H9, RHO-related GTP-bin 99.0 1.6E-09 5.6E-14 84.1 8.6 84 92-186 25-110 (201)
141 3bwd_D RAC-like GTP-binding pr 99.0 5.9E-10 2E-14 84.4 5.9 82 91-186 7-93 (182)
142 1m7b_A RND3/RHOE small GTP-bin 99.0 1.8E-09 6.3E-14 82.5 8.6 84 92-186 7-92 (184)
143 2fu5_C RAS-related protein RAB 99.0 3.8E-10 1.3E-14 85.8 4.6 82 92-186 8-94 (183)
144 1nrj_B SR-beta, signal recogni 99.0 8.5E-10 2.9E-14 86.5 6.6 82 90-183 10-93 (218)
145 2yc2_C IFT27, small RAB-relate 99.0 7.8E-10 2.7E-14 85.5 6.2 83 92-186 20-110 (208)
146 3j2k_7 ERF3, eukaryotic polype 99.0 2E-09 6.8E-14 94.4 9.4 84 90-185 15-131 (439)
147 3llu_A RAS-related GTP-binding 98.9 3.3E-09 1.1E-13 82.1 8.7 86 90-185 18-108 (196)
148 3lvq_E ARF-GAP with SH3 domain 98.9 2.7E-09 9.3E-14 94.3 9.3 82 92-186 322-403 (497)
149 1gwn_A RHO-related GTP-binding 98.9 3E-09 1E-13 83.5 8.5 84 92-186 28-113 (205)
150 2zej_A Dardarin, leucine-rich 98.9 5.1E-09 1.7E-13 80.2 8.2 81 93-185 3-92 (184)
151 3c5c_A RAS-like protein 12; GD 98.9 3.2E-09 1.1E-13 81.6 7.0 81 91-186 20-105 (187)
152 3l0i_B RAS-related protein RAB 98.9 2.9E-10 9.9E-15 88.2 1.0 83 92-185 33-118 (199)
153 3ihw_A Centg3; RAS, centaurin, 98.9 5.4E-09 1.9E-13 80.3 8.0 79 90-185 18-98 (184)
154 3o47_A ADP-ribosylation factor 98.9 3.1E-09 1.1E-13 89.8 7.2 78 93-186 166-246 (329)
155 3cbq_A GTP-binding protein REM 98.9 1E-09 3.5E-14 85.3 3.9 84 91-186 22-110 (195)
156 3t1o_A Gliding protein MGLA; G 98.9 1.1E-08 3.7E-13 78.1 9.4 82 91-184 13-109 (198)
157 3izq_1 HBS1P, elongation facto 98.8 1.8E-09 6.2E-14 98.4 5.0 83 90-184 165-280 (611)
158 2wkq_A NPH1-1, RAS-related C3 98.8 1E-08 3.5E-13 85.0 8.9 81 92-186 155-240 (332)
159 1f5n_A Interferon-induced guan 98.8 2.5E-09 8.5E-14 97.1 5.6 60 91-151 37-104 (592)
160 3th5_A RAS-related C3 botulinu 98.3 4.3E-10 1.5E-14 87.4 0.0 82 91-186 29-115 (204)
161 3p26_A Elongation factor 1 alp 98.8 4.7E-09 1.6E-13 92.9 6.3 83 92-185 33-147 (483)
162 1udx_A The GTP-binding protein 98.8 5.5E-09 1.9E-13 91.2 5.9 85 92-183 157-246 (416)
163 2f9l_A RAB11B, member RAS onco 98.8 3E-08 1E-12 76.8 8.9 57 92-148 5-64 (199)
164 1s0u_A EIF-2-gamma, translatio 98.8 2.5E-08 8.5E-13 86.4 9.1 84 91-185 7-117 (408)
165 3izy_P Translation initiation 98.8 1.3E-09 4.5E-14 97.9 1.0 81 91-184 3-87 (537)
166 1kk1_A EIF2gamma; initiation o 98.8 1.6E-08 5.3E-13 87.7 7.7 83 91-184 9-118 (410)
167 1oix_A RAS-related protein RAB 98.7 6E-08 2.1E-12 74.8 9.8 58 92-149 29-89 (191)
168 3tr5_A RF-3, peptide chain rel 98.7 2E-08 6.7E-13 90.2 7.5 83 92-185 13-118 (528)
169 3sjy_A Translation initiation 98.7 1.4E-08 4.8E-13 87.8 6.4 84 90-185 6-111 (403)
170 1zo1_I IF2, translation initia 98.7 4.6E-09 1.6E-13 93.7 3.0 81 91-184 3-86 (501)
171 1wb1_A Translation elongation 98.7 1.6E-08 5.6E-13 89.7 6.6 82 92-184 19-108 (482)
172 4dkx_A RAS-related protein RAB 98.7 1.8E-08 6.3E-13 80.2 6.2 83 92-185 13-98 (216)
173 3mca_A HBS1, elongation factor 98.7 1E-09 3.4E-14 99.8 -1.4 82 91-184 176-290 (592)
174 1d2e_A Elongation factor TU (E 98.7 4.7E-08 1.6E-12 84.5 8.6 81 93-184 4-101 (397)
175 1zun_B Sulfate adenylate trans 98.7 3.3E-08 1.1E-12 86.3 7.4 83 92-185 24-140 (434)
176 2c78_A Elongation factor TU-A; 98.6 1.1E-08 3.8E-13 88.5 3.5 84 91-185 10-111 (405)
177 2g3y_A GTP-binding protein GEM 98.6 7.4E-08 2.5E-12 76.3 7.7 83 92-185 37-124 (211)
178 2cjw_A GTP-binding protein GEM 98.6 2.3E-08 7.7E-13 77.4 4.2 57 92-149 6-67 (192)
179 1f60_A Elongation factor EEF1A 98.6 2.4E-08 8.3E-13 87.9 4.8 82 92-184 7-120 (458)
180 2qag_B Septin-6, protein NEDD5 98.6 1.7E-07 6E-12 81.9 10.0 62 92-153 42-110 (427)
181 1jny_A EF-1-alpha, elongation 98.6 1.7E-08 5.9E-13 88.2 3.5 83 92-185 6-120 (435)
182 1g7s_A Translation initiation 98.6 3E-08 1E-12 90.1 5.0 80 91-184 4-105 (594)
183 3dpu_A RAB family protein; roc 98.6 4.4E-08 1.5E-12 87.6 5.9 85 90-185 39-134 (535)
184 2qag_A Septin-2, protein NEDD5 98.6 5.2E-08 1.8E-12 83.3 6.1 59 92-151 37-108 (361)
185 2p67_A LAO/AO transport system 98.6 9.5E-08 3.3E-12 80.9 7.3 83 90-186 54-183 (341)
186 2elf_A Protein translation elo 98.6 2.7E-08 9.4E-13 85.4 3.8 67 94-181 23-92 (370)
187 2qm8_A GTPase/ATPase; G protei 98.6 5.8E-08 2E-12 82.3 5.6 24 91-114 54-77 (337)
188 2h5e_A Peptide chain release f 98.6 1.5E-07 5.1E-12 84.5 8.3 83 92-185 13-118 (529)
189 2xex_A Elongation factor G; GT 98.5 4.2E-08 1.4E-12 90.6 4.5 85 90-185 8-111 (693)
190 3p32_A Probable GTPase RV1496/ 98.5 2.2E-07 7.5E-12 79.1 8.6 24 91-114 78-101 (355)
191 2j37_W Signal recognition part 98.5 7.8E-07 2.7E-11 79.4 11.1 89 91-185 100-226 (504)
192 1r5b_A Eukaryotic peptide chai 98.5 9.8E-08 3.4E-12 84.2 5.0 83 92-185 43-157 (467)
193 1t9h_A YLOQ, probable GTPase E 98.4 6E-08 2.1E-12 81.4 2.2 58 91-150 172-236 (307)
194 1dar_A EF-G, elongation factor 98.4 4.3E-07 1.5E-11 83.9 7.3 84 91-185 11-113 (691)
195 3avx_A Elongation factor TS, e 98.4 8.8E-07 3E-11 85.7 9.2 84 91-185 295-395 (1289)
196 2rdo_7 EF-G, elongation factor 98.4 1.1E-06 3.7E-11 81.3 9.5 85 90-185 8-118 (704)
197 1n0u_A EF-2, elongation factor 98.4 3.7E-07 1.3E-11 86.0 5.8 82 92-185 19-134 (842)
198 3sop_A Neuronal-specific septi 98.3 2.2E-07 7.4E-12 76.5 3.7 59 93-151 3-73 (270)
199 3cb4_D GTP-binding protein LEP 98.3 4.2E-07 1.4E-11 82.7 5.7 83 92-185 4-107 (599)
200 3r7w_B Gtpase2, GTP-binding pr 98.3 3.2E-07 1.1E-11 77.7 3.8 83 94-185 1-85 (331)
201 2ywe_A GTP-binding protein LEP 98.3 5.8E-07 2E-11 81.7 5.6 83 92-185 6-109 (600)
202 2qag_C Septin-7; cell cycle, c 98.3 5.3E-07 1.8E-11 78.7 5.1 60 92-151 31-101 (418)
203 3c5h_A Glucocorticoid receptor 98.3 1.2E-06 4E-11 71.0 6.3 26 90-115 17-51 (255)
204 2yv5_A YJEQ protein; hydrolase 98.2 1.6E-06 5.4E-11 72.3 6.6 56 92-149 165-227 (302)
205 3q5d_A Atlastin-1; G protein, 98.2 2E-06 6.7E-11 75.7 7.0 25 91-115 66-90 (447)
206 2dy1_A Elongation factor G; tr 98.2 3.9E-06 1.3E-10 77.1 9.2 83 91-184 8-109 (665)
207 2rcn_A Probable GTPase ENGC; Y 98.2 7E-07 2.4E-11 76.4 3.4 58 92-149 215-279 (358)
208 2qnr_A Septin-2, protein NEDD5 98.2 1.3E-06 4.6E-11 72.7 4.9 58 92-150 18-88 (301)
209 1u0l_A Probable GTPase ENGC; p 98.1 1.4E-06 4.9E-11 72.4 3.5 58 92-150 169-233 (301)
210 1tq4_A IIGP1, interferon-induc 98.1 3.1E-06 1E-10 73.8 5.5 59 92-150 69-132 (413)
211 2v3c_C SRP54, signal recogniti 98.1 4.2E-06 1.4E-10 73.3 5.9 88 92-184 99-222 (432)
212 3ney_A 55 kDa erythrocyte memb 98.0 6E-07 2E-11 70.8 -0.5 62 87-148 14-76 (197)
213 1yrb_A ATP(GTP)binding protein 98.0 1.1E-06 3.9E-11 70.5 0.8 22 92-113 14-35 (262)
214 3szr_A Interferon-induced GTP- 98.0 4.8E-05 1.6E-09 69.2 11.0 25 91-115 44-68 (608)
215 3dm5_A SRP54, signal recogniti 97.9 4.5E-05 1.5E-09 66.9 10.1 88 92-184 100-224 (443)
216 2wsm_A Hydrogenase expression/ 97.8 4.1E-06 1.4E-10 65.4 0.5 24 92-115 30-53 (221)
217 3vqt_A RF-3, peptide chain rel 97.8 3.1E-05 1.1E-09 69.6 6.1 80 93-183 32-134 (548)
218 3kl4_A SRP54, signal recogniti 97.7 0.0001 3.5E-09 64.5 8.7 24 91-114 96-119 (433)
219 1kgd_A CASK, peripheral plasma 97.6 3.1E-05 1.1E-09 59.1 3.3 25 92-116 5-29 (180)
220 4fn5_A EF-G 1, elongation fact 97.5 0.0002 7E-09 66.1 7.3 82 91-183 12-119 (709)
221 3j25_A Tetracycline resistance 97.5 2.7E-05 9.2E-10 71.2 1.2 80 93-183 3-101 (638)
222 1lvg_A Guanylate kinase, GMP k 97.4 6.9E-05 2.4E-09 58.2 3.1 24 92-115 4-27 (198)
223 2px0_A Flagellar biosynthesis 97.4 0.00011 3.8E-09 61.0 4.2 25 91-115 104-128 (296)
224 1znw_A Guanylate kinase, GMP k 97.3 0.00014 4.7E-09 56.6 3.7 26 91-116 19-44 (207)
225 1j8m_F SRP54, signal recogniti 97.3 0.0003 1E-08 58.4 5.7 23 92-114 98-120 (297)
226 1ye8_A Protein THEP1, hypothet 97.3 0.00014 4.7E-09 55.9 3.4 23 94-116 2-24 (178)
227 3tr0_A Guanylate kinase, GMP k 97.3 0.00019 6.4E-09 55.1 3.8 24 92-115 7-30 (205)
228 1z6g_A Guanylate kinase; struc 97.3 0.00016 5.4E-09 57.1 3.4 25 92-116 23-47 (218)
229 3a00_A Guanylate kinase, GMP k 97.3 0.00013 4.6E-09 55.8 2.9 23 94-116 3-25 (186)
230 1ex7_A Guanylate kinase; subst 97.3 0.00015 5.1E-09 56.4 3.1 38 94-131 3-40 (186)
231 3tau_A Guanylate kinase, GMP k 97.2 0.00023 7.8E-09 55.5 4.1 26 91-116 7-32 (208)
232 1s96_A Guanylate kinase, GMP k 97.2 0.00019 6.6E-09 56.9 3.6 26 91-116 15-40 (219)
233 4ido_A Atlastin-1; GTPase, GTP 97.2 0.00092 3.1E-08 58.8 8.1 23 91-113 66-88 (457)
234 3tif_A Uncharacterized ABC tra 97.2 0.00022 7.5E-09 57.2 3.6 26 91-116 30-55 (235)
235 2xxa_A Signal recognition part 97.2 0.0015 5.1E-08 57.0 9.0 22 92-113 100-121 (433)
236 2pcj_A ABC transporter, lipopr 97.1 0.00028 9.5E-09 56.1 3.6 25 92-116 30-54 (224)
237 3c8u_A Fructokinase; YP_612366 97.1 0.00025 8.5E-09 55.2 3.1 26 91-116 21-46 (208)
238 1zp6_A Hypothetical protein AT 97.1 0.0003 1E-08 53.4 3.4 24 92-115 9-32 (191)
239 2cbz_A Multidrug resistance-as 97.1 0.00033 1.1E-08 56.2 3.6 26 91-116 30-55 (237)
240 1b0u_A Histidine permease; ABC 97.1 0.00036 1.2E-08 56.8 3.6 26 91-116 31-56 (262)
241 2onk_A Molybdate/tungstate ABC 97.0 0.00034 1.2E-08 56.3 3.2 24 93-116 25-48 (240)
242 2hf9_A Probable hydrogenase ni 97.0 0.00037 1.3E-08 54.3 3.3 24 92-115 38-61 (226)
243 1g6h_A High-affinity branched- 97.0 0.00039 1.3E-08 56.3 3.5 26 91-116 32-57 (257)
244 2olj_A Amino acid ABC transpor 97.0 0.00043 1.5E-08 56.5 3.6 26 91-116 49-74 (263)
245 1mv5_A LMRA, multidrug resista 97.0 0.00036 1.2E-08 56.1 3.1 25 92-116 28-52 (243)
246 4g1u_C Hemin import ATP-bindin 97.0 0.0004 1.4E-08 56.8 3.4 25 92-116 37-61 (266)
247 2ff7_A Alpha-hemolysin translo 97.0 0.00042 1.4E-08 55.9 3.5 25 92-116 35-59 (247)
248 3asz_A Uridine kinase; cytidin 97.0 0.00039 1.3E-08 53.8 3.2 24 92-115 6-29 (211)
249 3gfo_A Cobalt import ATP-bindi 97.0 0.0004 1.4E-08 57.1 3.4 24 92-115 34-57 (275)
250 2pze_A Cystic fibrosis transme 97.0 0.00043 1.5E-08 55.2 3.5 25 92-116 34-58 (229)
251 2ghi_A Transport protein; mult 97.0 0.00044 1.5E-08 56.2 3.6 26 91-116 45-70 (260)
252 2zu0_C Probable ATP-dependent 97.0 0.00047 1.6E-08 56.2 3.8 25 91-115 45-69 (267)
253 2kjq_A DNAA-related protein; s 97.0 0.00099 3.4E-08 49.5 5.3 51 92-150 36-96 (149)
254 1vpl_A ABC transporter, ATP-bi 97.0 0.00046 1.6E-08 56.1 3.6 26 91-116 40-65 (256)
255 2v9p_A Replication protein E1; 97.0 0.00046 1.6E-08 57.7 3.7 25 91-115 125-149 (305)
256 1sgw_A Putative ABC transporte 97.0 0.00042 1.4E-08 54.9 3.2 25 92-116 35-59 (214)
257 2ixe_A Antigen peptide transpo 97.0 0.00047 1.6E-08 56.4 3.6 26 91-116 44-69 (271)
258 2j41_A Guanylate kinase; GMP, 97.0 0.00054 1.9E-08 52.5 3.8 25 92-116 6-30 (207)
259 2d2e_A SUFC protein; ABC-ATPas 97.0 0.00049 1.7E-08 55.6 3.7 24 92-115 29-52 (250)
260 1ji0_A ABC transporter; ATP bi 97.0 0.00047 1.6E-08 55.3 3.5 25 92-116 32-56 (240)
261 1htw_A HI0065; nucleotide-bind 96.9 0.00047 1.6E-08 52.0 3.2 24 92-115 33-56 (158)
262 2yz2_A Putative ABC transporte 96.9 0.00053 1.8E-08 55.9 3.6 26 91-116 32-57 (266)
263 2qi9_C Vitamin B12 import ATP- 96.9 0.00051 1.7E-08 55.6 3.5 25 92-116 26-50 (249)
264 3b85_A Phosphate starvation-in 96.9 0.00038 1.3E-08 54.8 2.6 24 92-115 22-45 (208)
265 2eyu_A Twitching motility prot 96.9 0.0005 1.7E-08 56.0 3.2 24 92-115 25-48 (261)
266 2ihy_A ABC transporter, ATP-bi 96.9 0.00055 1.9E-08 56.3 3.5 25 92-116 47-71 (279)
267 3nh6_A ATP-binding cassette SU 96.9 0.00039 1.3E-08 58.1 2.5 26 91-116 79-104 (306)
268 2nq2_C Hypothetical ABC transp 96.9 0.0006 2.1E-08 55.2 3.4 25 92-116 31-55 (253)
269 4gp7_A Metallophosphoesterase; 96.8 0.00054 1.8E-08 51.8 2.8 21 92-112 9-29 (171)
270 4eun_A Thermoresistant glucoki 96.8 0.00074 2.5E-08 52.1 3.6 25 91-115 28-52 (200)
271 2f1r_A Molybdopterin-guanine d 96.8 0.00036 1.2E-08 53.3 1.7 24 93-116 3-26 (171)
272 2bbs_A Cystic fibrosis transme 96.8 0.00077 2.6E-08 55.8 3.7 26 91-116 63-88 (290)
273 2qor_A Guanylate kinase; phosp 96.8 0.00076 2.6E-08 52.2 3.4 25 91-115 11-35 (204)
274 3lnc_A Guanylate kinase, GMP k 96.8 0.0005 1.7E-08 54.2 2.4 25 91-115 26-51 (231)
275 2bdt_A BH3686; alpha-beta prot 96.8 0.00073 2.5E-08 51.4 3.2 22 94-115 4-25 (189)
276 1kag_A SKI, shikimate kinase I 96.8 0.00076 2.6E-08 50.3 3.2 23 93-115 5-27 (173)
277 1np6_A Molybdopterin-guanine d 96.8 0.00085 2.9E-08 51.4 3.5 24 92-115 6-29 (174)
278 2i3b_A HCR-ntpase, human cance 96.8 0.00076 2.6E-08 52.3 3.2 22 94-115 3-24 (189)
279 2pjz_A Hypothetical protein ST 96.8 0.00069 2.4E-08 55.3 3.1 24 92-115 30-53 (263)
280 1knq_A Gluconate kinase; ALFA/ 96.8 0.00093 3.2E-08 50.0 3.5 24 92-115 8-31 (175)
281 3tui_C Methionine import ATP-b 96.7 0.00099 3.4E-08 57.0 3.8 26 91-116 53-78 (366)
282 3fvq_A Fe(3+) IONS import ATP- 96.7 0.001 3.6E-08 56.7 3.9 25 92-116 30-54 (359)
283 1rj9_A FTSY, signal recognitio 96.7 0.0011 3.8E-08 55.2 4.0 25 91-115 101-125 (304)
284 4a74_A DNA repair and recombin 96.7 0.00096 3.3E-08 51.8 3.3 23 92-114 25-47 (231)
285 3uie_A Adenylyl-sulfate kinase 96.7 0.00096 3.3E-08 51.4 3.2 24 92-115 25-48 (200)
286 2gza_A Type IV secretion syste 96.7 0.00094 3.2E-08 56.8 3.4 25 92-116 175-199 (361)
287 3aez_A Pantothenate kinase; tr 96.7 0.00092 3.2E-08 55.8 3.3 26 90-115 88-113 (312)
288 2bbw_A Adenylate kinase 4, AK4 96.7 0.0012 4E-08 52.6 3.6 22 92-113 27-48 (246)
289 2yyz_A Sugar ABC transporter, 96.6 0.0012 4.1E-08 56.3 3.8 25 92-116 29-53 (359)
290 2it1_A 362AA long hypothetical 96.6 0.0012 4.3E-08 56.3 3.8 25 92-116 29-53 (362)
291 3rlf_A Maltose/maltodextrin im 96.6 0.0013 4.3E-08 56.6 3.8 25 92-116 29-53 (381)
292 3b9q_A Chloroplast SRP recepto 96.6 0.0023 7.8E-08 53.2 5.2 25 91-115 99-123 (302)
293 1z47_A CYSA, putative ABC-tran 96.6 0.0013 4.4E-08 56.1 3.7 25 92-116 41-65 (355)
294 2pt7_A CAG-ALFA; ATPase, prote 96.6 0.001 3.5E-08 55.9 3.0 24 93-116 172-195 (330)
295 1v43_A Sugar-binding transport 96.6 0.0014 4.9E-08 56.1 3.8 25 92-116 37-61 (372)
296 1cke_A CK, MSSA, protein (cyti 96.6 0.0014 4.8E-08 51.0 3.5 23 93-115 6-28 (227)
297 2jeo_A Uridine-cytidine kinase 96.6 0.0013 4.4E-08 52.4 3.2 24 92-115 25-48 (245)
298 1lw7_A Transcriptional regulat 96.6 0.001 3.6E-08 56.2 2.8 25 92-116 170-194 (365)
299 1g29_1 MALK, maltose transport 96.5 0.0014 4.9E-08 56.0 3.7 25 92-116 29-53 (372)
300 3jvv_A Twitching mobility prot 96.5 0.0012 4.2E-08 56.1 3.2 22 94-115 125-146 (356)
301 3kb2_A SPBC2 prophage-derived 96.5 0.0015 5.1E-08 48.3 3.3 23 93-115 2-24 (173)
302 2ehv_A Hypothetical protein PH 96.5 0.0016 5.6E-08 51.1 3.6 22 92-113 30-51 (251)
303 3ec2_A DNA replication protein 96.5 0.0014 4.9E-08 49.4 3.1 24 92-115 38-61 (180)
304 3gd7_A Fusion complex of cysti 96.5 0.0017 5.8E-08 56.0 3.9 26 91-116 46-71 (390)
305 3d31_A Sulfate/molybdate ABC t 96.5 0.0012 3.9E-08 56.2 2.8 25 92-116 26-50 (348)
306 2if2_A Dephospho-COA kinase; a 96.5 0.0018 6E-08 49.7 3.6 22 93-114 2-23 (204)
307 2npi_A Protein CLP1; CLP1-PCF1 96.5 0.0016 5.4E-08 57.3 3.6 25 91-115 137-161 (460)
308 2ewv_A Twitching motility prot 96.5 0.0015 5.1E-08 55.8 3.2 24 92-115 136-159 (372)
309 3vaa_A Shikimate kinase, SK; s 96.4 0.002 7E-08 49.5 3.6 24 92-115 25-48 (199)
310 1oxx_K GLCV, glucose, ABC tran 96.4 0.0011 3.6E-08 56.5 2.1 25 92-116 31-55 (353)
311 4e22_A Cytidylate kinase; P-lo 96.4 0.0021 7.2E-08 51.6 3.7 23 91-113 26-48 (252)
312 1sq5_A Pantothenate kinase; P- 96.4 0.0019 6.5E-08 53.5 3.5 25 91-115 79-103 (308)
313 2yhs_A FTSY, cell division pro 96.4 0.0035 1.2E-07 55.7 5.3 25 91-115 292-316 (503)
314 2og2_A Putative signal recogni 96.4 0.0036 1.2E-07 53.4 5.2 25 91-115 156-180 (359)
315 3e70_C DPA, signal recognition 96.4 0.0019 6.4E-08 54.4 3.4 25 91-115 128-152 (328)
316 3lw7_A Adenylate kinase relate 96.4 0.002 6.8E-08 47.4 3.2 20 93-112 2-21 (179)
317 3t61_A Gluconokinase; PSI-biol 96.4 0.0023 7.9E-08 49.1 3.6 24 92-115 18-41 (202)
318 2qt1_A Nicotinamide riboside k 96.4 0.0022 7.5E-08 49.4 3.4 24 92-115 21-44 (207)
319 1nij_A Hypothetical protein YJ 96.4 0.0013 4.6E-08 54.7 2.3 24 92-115 4-27 (318)
320 2oap_1 GSPE-2, type II secreti 96.3 0.0022 7.4E-08 57.2 3.5 22 94-115 262-283 (511)
321 3kta_A Chromosome segregation 96.3 0.0024 8.2E-08 48.1 3.3 22 94-115 28-49 (182)
322 1rz3_A Hypothetical protein rb 96.3 0.0026 8.9E-08 49.1 3.5 24 91-114 21-44 (201)
323 3b60_A Lipid A export ATP-bind 96.3 0.0024 8.3E-08 57.5 3.7 26 91-116 368-393 (582)
324 1p9r_A General secretion pathw 96.3 0.0021 7E-08 55.9 3.0 23 93-115 168-190 (418)
325 2vp4_A Deoxynucleoside kinase; 96.3 0.0021 7.1E-08 50.8 2.8 25 91-115 19-43 (230)
326 1yqt_A RNAse L inhibitor; ATP- 96.2 0.0027 9.3E-08 56.8 3.7 25 91-115 46-70 (538)
327 3b5x_A Lipid A export ATP-bind 96.2 0.0026 8.9E-08 57.3 3.5 26 91-116 368-393 (582)
328 1jjv_A Dephospho-COA kinase; P 96.2 0.0028 9.6E-08 48.7 3.2 23 93-115 3-25 (206)
329 2jaq_A Deoxyguanosine kinase; 96.2 0.003 1E-07 48.0 3.3 22 94-115 2-23 (205)
330 1nks_A Adenylate kinase; therm 96.2 0.0028 9.5E-08 47.7 3.1 23 93-115 2-24 (194)
331 1qhx_A CPT, protein (chloramph 96.2 0.0034 1.2E-07 46.9 3.5 23 93-115 4-26 (178)
332 2yl4_A ATP-binding cassette SU 96.2 0.0023 7.8E-08 57.8 2.9 26 91-116 369-394 (595)
333 1ly1_A Polynucleotide kinase; 96.1 0.0033 1.1E-07 46.8 3.2 21 94-114 4-24 (181)
334 1ixz_A ATP-dependent metallopr 96.1 0.0029 9.8E-08 50.3 3.0 21 95-115 52-72 (254)
335 2x8a_A Nuclear valosin-contain 96.1 0.0028 9.7E-08 51.7 3.0 22 95-116 47-68 (274)
336 1xjc_A MOBB protein homolog; s 96.1 0.0038 1.3E-07 47.6 3.5 24 92-115 4-27 (169)
337 3tqc_A Pantothenate kinase; bi 96.1 0.0035 1.2E-07 52.6 3.6 25 91-115 91-115 (321)
338 1odf_A YGR205W, hypothetical 3 96.1 0.0035 1.2E-07 51.7 3.5 25 91-115 30-54 (290)
339 3qf4_B Uncharacterized ABC tra 96.1 0.0027 9.1E-08 57.4 3.0 26 91-116 380-405 (598)
340 1kht_A Adenylate kinase; phosp 96.1 0.0039 1.3E-07 46.8 3.5 23 93-115 4-26 (192)
341 1y63_A LMAJ004144AAA protein; 96.1 0.005 1.7E-07 46.7 4.0 25 91-115 9-33 (184)
342 3euj_A Chromosome partition pr 96.1 0.0031 1.1E-07 55.8 3.2 23 93-115 30-52 (483)
343 3j16_B RLI1P; ribosome recycli 96.0 0.0038 1.3E-07 56.7 3.7 26 91-116 102-127 (608)
344 3ozx_A RNAse L inhibitor; ATP 96.0 0.0033 1.1E-07 56.3 3.3 24 92-115 25-48 (538)
345 4a82_A Cystic fibrosis transme 96.0 0.0023 8E-08 57.6 2.3 26 91-116 366-391 (578)
346 1gvn_B Zeta; postsegregational 96.0 0.011 3.7E-07 48.5 6.1 24 92-115 33-56 (287)
347 2rhm_A Putative kinase; P-loop 96.0 0.0041 1.4E-07 46.9 3.3 24 92-115 5-28 (193)
348 3trf_A Shikimate kinase, SK; a 96.0 0.0045 1.5E-07 46.6 3.5 24 92-115 5-28 (185)
349 2obl_A ESCN; ATPase, hydrolase 96.0 0.0043 1.5E-07 52.5 3.7 26 91-116 70-95 (347)
350 3qf4_A ABC transporter, ATP-bi 96.0 0.0029 1E-07 57.1 2.8 26 91-116 368-393 (587)
351 2yvu_A Probable adenylyl-sulfa 96.0 0.0051 1.8E-07 46.5 3.7 25 91-115 12-36 (186)
352 2w0m_A SSO2452; RECA, SSPF, un 96.0 0.005 1.7E-07 47.5 3.6 23 92-114 23-45 (235)
353 3bk7_A ABC transporter ATP-bin 96.0 0.0042 1.4E-07 56.4 3.6 25 91-115 116-140 (607)
354 2v54_A DTMP kinase, thymidylat 95.9 0.0059 2E-07 46.5 3.9 24 92-115 4-27 (204)
355 1gtv_A TMK, thymidylate kinase 95.9 0.0024 8.2E-08 49.1 1.6 22 94-115 2-23 (214)
356 1cr0_A DNA primase/helicase; R 95.9 0.0058 2E-07 49.8 3.9 24 92-115 35-58 (296)
357 1iy2_A ATP-dependent metallopr 95.9 0.0043 1.5E-07 50.2 3.0 21 95-115 76-96 (278)
358 3iij_A Coilin-interacting nucl 95.9 0.0054 1.9E-07 46.0 3.4 24 92-115 11-34 (180)
359 2c95_A Adenylate kinase 1; tra 95.9 0.0065 2.2E-07 45.9 3.8 24 92-115 9-32 (196)
360 2dpy_A FLII, flagellum-specifi 95.8 0.0052 1.8E-07 53.6 3.6 26 91-116 156-181 (438)
361 4f4c_A Multidrug resistance pr 95.8 0.0031 1E-07 62.1 2.3 26 91-116 1104-1129(1321)
362 3cm0_A Adenylate kinase; ATP-b 95.8 0.0056 1.9E-07 46.0 3.2 22 93-114 5-26 (186)
363 2pez_A Bifunctional 3'-phospho 95.8 0.0055 1.9E-07 46.0 3.1 24 92-115 5-28 (179)
364 1zak_A Adenylate kinase; ATP:A 95.8 0.0064 2.2E-07 47.4 3.6 24 92-115 5-28 (222)
365 1in4_A RUVB, holliday junction 95.8 0.0058 2E-07 51.0 3.5 23 93-115 52-74 (334)
366 2wwf_A Thymidilate kinase, put 95.8 0.0071 2.4E-07 46.3 3.7 24 92-115 10-33 (212)
367 1uf9_A TT1252 protein; P-loop, 95.7 0.0067 2.3E-07 46.1 3.5 24 92-115 8-31 (203)
368 2plr_A DTMP kinase, probable t 95.7 0.0059 2E-07 46.6 3.1 23 93-115 5-27 (213)
369 3nwj_A ATSK2; P loop, shikimat 95.7 0.0062 2.1E-07 49.2 3.4 24 92-115 48-71 (250)
370 1nn5_A Similar to deoxythymidy 95.7 0.008 2.7E-07 46.1 3.9 24 92-115 9-32 (215)
371 1via_A Shikimate kinase; struc 95.7 0.0062 2.1E-07 45.6 3.1 23 93-115 5-27 (175)
372 1zd8_A GTP:AMP phosphotransfer 95.7 0.0072 2.5E-07 47.3 3.6 24 92-115 7-30 (227)
373 3ozx_A RNAse L inhibitor; ATP 95.7 0.0061 2.1E-07 54.6 3.5 24 92-115 294-317 (538)
374 1jbk_A CLPB protein; beta barr 95.7 0.0079 2.7E-07 44.4 3.6 24 92-115 43-66 (195)
375 1yqt_A RNAse L inhibitor; ATP- 95.7 0.0056 1.9E-07 54.7 3.2 25 92-116 312-336 (538)
376 2cvh_A DNA repair and recombin 95.7 0.0079 2.7E-07 46.2 3.7 23 92-114 20-42 (220)
377 3qf7_A RAD50; ABC-ATPase, ATPa 95.7 0.0056 1.9E-07 52.0 3.0 20 94-113 25-44 (365)
378 1aky_A Adenylate kinase; ATP:A 95.6 0.0084 2.9E-07 46.6 3.7 24 92-115 4-27 (220)
379 1ukz_A Uridylate kinase; trans 95.6 0.0093 3.2E-07 45.5 3.8 25 91-115 14-38 (203)
380 3fb4_A Adenylate kinase; psych 95.6 0.0076 2.6E-07 46.5 3.4 22 94-115 2-23 (216)
381 1f2t_A RAD50 ABC-ATPase; DNA d 95.6 0.007 2.4E-07 44.8 3.0 20 94-113 25-44 (149)
382 3dl0_A Adenylate kinase; phosp 95.6 0.0082 2.8E-07 46.4 3.5 22 94-115 2-23 (216)
383 2bwj_A Adenylate kinase 5; pho 95.6 0.0088 3E-07 45.2 3.6 23 93-115 13-35 (199)
384 2cdn_A Adenylate kinase; phosp 95.6 0.011 3.7E-07 45.2 4.1 24 92-115 20-43 (201)
385 1svm_A Large T antigen; AAA+ f 95.6 0.0085 2.9E-07 51.3 3.8 24 92-115 169-192 (377)
386 3eph_A TRNA isopentenyltransfe 95.5 0.011 3.9E-07 51.1 4.4 67 93-159 3-78 (409)
387 4f4c_A Multidrug resistance pr 95.5 0.0076 2.6E-07 59.3 3.7 26 91-116 443-468 (1321)
388 3bk7_A ABC transporter ATP-bin 95.5 0.0082 2.8E-07 54.5 3.7 25 92-116 382-406 (607)
389 1n0w_A DNA repair protein RAD5 95.5 0.008 2.7E-07 46.9 3.2 23 92-114 24-46 (243)
390 2p5t_B PEZT; postsegregational 95.5 0.0085 2.9E-07 47.9 3.4 24 92-115 32-55 (253)
391 2z0h_A DTMP kinase, thymidylat 95.5 0.0082 2.8E-07 45.4 3.0 22 94-115 2-23 (197)
392 1e6c_A Shikimate kinase; phosp 95.4 0.0093 3.2E-07 44.1 3.2 23 93-115 3-25 (173)
393 1m7g_A Adenylylsulfate kinase; 95.4 0.009 3.1E-07 46.2 3.2 24 92-115 25-48 (211)
394 1tev_A UMP-CMP kinase; ploop, 95.4 0.0086 3E-07 44.9 3.0 23 93-115 4-26 (196)
395 3j16_B RLI1P; ribosome recycli 95.4 0.0079 2.7E-07 54.7 3.2 23 94-116 380-402 (608)
396 3a4m_A L-seryl-tRNA(SEC) kinas 95.4 0.0087 3E-07 48.1 3.1 24 92-115 4-27 (260)
397 1vht_A Dephospho-COA kinase; s 95.4 0.0096 3.3E-07 46.1 3.3 22 93-114 5-26 (218)
398 2ze6_A Isopentenyl transferase 95.4 0.0083 2.9E-07 48.2 3.0 22 94-115 3-24 (253)
399 1qf9_A UMP/CMP kinase, protein 95.4 0.012 4E-07 44.1 3.7 23 93-115 7-29 (194)
400 2iyv_A Shikimate kinase, SK; t 95.4 0.0099 3.4E-07 44.7 3.2 23 93-115 3-25 (184)
401 2pbr_A DTMP kinase, thymidylat 95.4 0.011 3.6E-07 44.5 3.4 21 94-114 2-22 (195)
402 1lv7_A FTSH; alpha/beta domain 95.4 0.019 6.4E-07 45.6 5.0 23 93-115 46-68 (257)
403 4b4t_L 26S protease subunit RP 95.4 0.052 1.8E-06 47.4 8.0 25 92-116 215-239 (437)
404 4aby_A DNA repair protein RECN 95.3 0.0037 1.3E-07 53.3 0.7 24 91-115 60-83 (415)
405 2pt5_A Shikimate kinase, SK; a 95.3 0.012 4E-07 43.4 3.3 22 94-115 2-23 (168)
406 3g5u_A MCG1178, multidrug resi 95.3 0.0089 3.1E-07 58.7 3.3 26 91-116 415-440 (1284)
407 1e4v_A Adenylate kinase; trans 95.3 0.012 4.2E-07 45.5 3.5 22 94-115 2-23 (214)
408 3bos_A Putative DNA replicatio 95.3 0.013 4.4E-07 45.3 3.6 24 92-115 52-75 (242)
409 3be4_A Adenylate kinase; malar 95.2 0.01 3.6E-07 46.1 3.0 24 92-115 5-28 (217)
410 3exa_A TRNA delta(2)-isopenten 95.2 0.016 5.5E-07 48.6 4.3 66 93-158 4-78 (322)
411 1sxj_E Activator 1 40 kDa subu 95.2 0.011 3.7E-07 49.0 3.3 24 92-115 36-59 (354)
412 2vli_A Antibiotic resistance p 95.2 0.009 3.1E-07 44.6 2.5 24 92-115 5-28 (183)
413 1qhl_A Protein (cell division 95.2 0.0023 7.9E-08 51.1 -1.0 21 95-115 30-50 (227)
414 2p65_A Hypothetical protein PF 95.2 0.01 3.6E-07 43.8 2.7 24 92-115 43-66 (187)
415 1q3t_A Cytidylate kinase; nucl 95.1 0.016 5.5E-07 45.6 3.8 26 90-115 14-39 (236)
416 2w58_A DNAI, primosome compone 95.1 0.015 5.2E-07 44.3 3.5 23 93-115 55-77 (202)
417 4eaq_A DTMP kinase, thymidylat 95.1 0.014 4.7E-07 46.2 3.3 25 91-115 25-49 (229)
418 1ak2_A Adenylate kinase isoenz 95.0 0.018 6.3E-07 45.2 3.8 24 92-115 16-39 (233)
419 3a8t_A Adenylate isopentenyltr 95.0 0.022 7.4E-07 48.2 4.4 67 93-159 41-117 (339)
420 3r20_A Cytidylate kinase; stru 95.0 0.017 5.6E-07 46.3 3.5 24 92-115 9-32 (233)
421 4b4t_K 26S protease regulatory 95.0 0.078 2.7E-06 46.1 8.0 23 93-115 207-229 (428)
422 3tlx_A Adenylate kinase 2; str 95.0 0.015 5.2E-07 46.2 3.2 24 92-115 29-52 (243)
423 2xb4_A Adenylate kinase; ATP-b 94.9 0.016 5.6E-07 45.3 3.3 22 94-115 2-23 (223)
424 1nlf_A Regulatory protein REPA 94.9 0.019 6.3E-07 46.4 3.7 23 92-114 30-52 (279)
425 2iw3_A Elongation factor 3A; a 94.9 0.0093 3.2E-07 57.0 2.1 25 91-115 698-722 (986)
426 1vma_A Cell division protein F 94.9 0.027 9.2E-07 46.8 4.7 24 92-115 104-127 (306)
427 2iw3_A Elongation factor 3A; a 94.9 0.016 5.5E-07 55.4 3.6 24 92-115 461-484 (986)
428 3ake_A Cytidylate kinase; CMP 94.9 0.018 6.1E-07 43.8 3.3 22 94-115 4-25 (208)
429 3qks_A DNA double-strand break 94.9 0.016 5.3E-07 45.0 3.0 21 93-113 24-44 (203)
430 2chg_A Replication factor C sm 94.8 0.022 7.5E-07 43.0 3.7 22 94-115 40-61 (226)
431 1uj2_A Uridine-cytidine kinase 94.8 0.017 5.9E-07 46.0 3.1 24 92-115 22-45 (252)
432 3sr0_A Adenylate kinase; phosp 94.8 0.019 6.5E-07 44.9 3.3 23 94-116 2-24 (206)
433 3cr8_A Sulfate adenylyltranfer 94.8 0.011 3.9E-07 53.0 2.2 24 92-115 369-392 (552)
434 1fnn_A CDC6P, cell division co 94.7 0.018 6.2E-07 47.9 3.4 23 93-115 45-67 (389)
435 1zuh_A Shikimate kinase; alpha 94.7 0.021 7.1E-07 42.2 3.3 25 91-115 6-30 (168)
436 3foz_A TRNA delta(2)-isopenten 94.7 0.019 6.5E-07 48.1 3.3 66 92-157 10-84 (316)
437 1sxj_C Activator 1 40 kDa subu 94.7 0.021 7.2E-07 47.4 3.6 23 93-115 47-69 (340)
438 3b9p_A CG5977-PA, isoform A; A 94.7 0.023 7.8E-07 46.0 3.7 25 92-116 54-78 (297)
439 3g5u_A MCG1178, multidrug resi 94.6 0.018 6.2E-07 56.5 3.5 26 91-116 1058-1083(1284)
440 2qby_A CDC6 homolog 1, cell di 94.6 0.023 7.8E-07 47.0 3.6 24 92-115 45-68 (386)
441 3ux8_A Excinuclease ABC, A sub 94.6 0.013 4.4E-07 53.6 2.2 21 93-113 349-369 (670)
442 2f6r_A COA synthase, bifunctio 94.6 0.023 7.9E-07 46.3 3.5 23 92-114 75-97 (281)
443 3h4m_A Proteasome-activating n 94.6 0.025 8.7E-07 45.3 3.7 25 92-116 51-75 (285)
444 3syl_A Protein CBBX; photosynt 94.6 0.03 1E-06 45.4 4.1 25 91-115 66-90 (309)
445 3umf_A Adenylate kinase; rossm 94.5 0.029 1E-06 44.3 3.9 24 93-116 30-53 (217)
446 2qz4_A Paraplegin; AAA+, SPG7, 94.5 0.028 9.7E-07 44.3 3.8 24 92-115 39-62 (262)
447 1w1w_A Structural maintenance 94.5 0.026 8.7E-07 48.7 3.7 24 92-115 26-49 (430)
448 1njg_A DNA polymerase III subu 94.5 0.022 7.6E-07 43.4 3.0 23 93-115 46-68 (250)
449 3crm_A TRNA delta(2)-isopenten 94.5 0.018 6.1E-07 48.4 2.6 65 93-157 6-79 (323)
450 1ko7_A HPR kinase/phosphatase; 94.4 0.029 9.9E-07 46.9 3.8 24 92-115 144-167 (314)
451 1zu4_A FTSY; GTPase, signal re 94.4 0.054 1.8E-06 45.2 5.5 25 91-115 104-128 (320)
452 3cf0_A Transitional endoplasmi 94.4 0.029 1E-06 45.9 3.7 25 92-116 49-73 (301)
453 4b4t_J 26S protease regulatory 94.3 0.12 4.3E-06 44.5 7.7 24 93-116 183-206 (405)
454 1l8q_A Chromosomal replication 94.3 0.025 8.6E-07 46.5 3.2 24 92-115 37-60 (324)
455 4ag6_A VIRB4 ATPase, type IV s 94.3 0.027 9.1E-07 47.8 3.4 25 91-115 34-58 (392)
456 1ltq_A Polynucleotide kinase; 94.3 0.026 9E-07 45.7 3.2 22 94-115 4-25 (301)
457 3zvl_A Bifunctional polynucleo 94.3 0.044 1.5E-06 47.2 4.8 25 92-116 258-282 (416)
458 4fcw_A Chaperone protein CLPB; 94.2 0.053 1.8E-06 43.8 5.0 23 93-115 48-70 (311)
459 1e69_A Chromosome segregation 94.2 0.019 6.4E-07 47.6 2.2 21 94-114 26-46 (322)
460 1tf7_A KAIC; homohexamer, hexa 94.1 0.031 1.1E-06 49.5 3.7 21 92-112 39-59 (525)
461 3m6a_A ATP-dependent protease 94.1 0.03 1E-06 50.0 3.5 25 91-115 107-131 (543)
462 2grj_A Dephospho-COA kinase; T 94.1 0.032 1.1E-06 43.1 3.2 24 92-115 12-35 (192)
463 1pzn_A RAD51, DNA repair and r 94.1 0.03 1E-06 47.2 3.3 25 91-115 130-154 (349)
464 3qkt_A DNA double-strand break 94.1 0.027 9.3E-07 47.0 3.0 21 94-114 25-45 (339)
465 3n70_A Transport activator; si 94.1 0.04 1.4E-06 40.0 3.5 24 92-115 24-47 (145)
466 1sxj_D Activator 1 41 kDa subu 94.0 0.042 1.4E-06 45.2 3.9 23 93-115 59-81 (353)
467 2ius_A DNA translocase FTSK; n 94.0 0.03 1E-06 49.9 3.1 25 91-115 166-190 (512)
468 3t15_A Ribulose bisphosphate c 93.9 0.043 1.5E-06 44.8 3.8 23 93-115 37-59 (293)
469 2qgz_A Helicase loader, putati 93.9 0.045 1.5E-06 45.2 4.0 24 92-115 152-175 (308)
470 4b4t_H 26S protease regulatory 93.9 0.2 6.8E-06 44.1 8.2 25 92-116 243-267 (467)
471 3tqf_A HPR(Ser) kinase; transf 93.9 0.048 1.7E-06 42.0 3.8 24 92-115 16-39 (181)
472 2qmh_A HPR kinase/phosphorylas 93.9 0.033 1.1E-06 43.8 2.9 25 92-116 34-58 (205)
473 2dr3_A UPF0273 protein PH0284; 93.9 0.044 1.5E-06 42.6 3.7 22 92-113 23-44 (247)
474 1tue_A Replication protein E1; 93.9 0.03 1E-06 44.2 2.6 22 94-115 60-81 (212)
475 1ofh_A ATP-dependent HSL prote 93.8 0.041 1.4E-06 44.3 3.6 24 92-115 50-73 (310)
476 2v1u_A Cell division control p 93.8 0.037 1.3E-06 45.8 3.3 24 92-115 44-67 (387)
477 1a7j_A Phosphoribulokinase; tr 93.8 0.023 8E-07 46.6 1.9 24 92-115 5-28 (290)
478 2o5v_A DNA replication and rep 93.7 0.037 1.3E-06 47.0 3.2 21 94-114 28-48 (359)
479 2ga8_A Hypothetical 39.9 kDa p 93.7 0.046 1.6E-06 46.5 3.7 25 91-115 23-47 (359)
480 2ocp_A DGK, deoxyguanosine kin 93.7 0.041 1.4E-06 43.3 3.2 24 93-116 3-26 (241)
481 1p5z_B DCK, deoxycytidine kina 93.7 0.025 8.5E-07 45.2 1.9 25 91-115 23-47 (263)
482 3pfi_A Holliday junction ATP-d 93.6 0.052 1.8E-06 44.6 3.8 24 92-115 55-78 (338)
483 2dhr_A FTSH; AAA+ protein, hex 93.5 0.037 1.3E-06 49.1 3.0 23 94-116 66-88 (499)
484 1d2n_A N-ethylmaleimide-sensit 93.5 0.042 1.4E-06 44.0 2.9 24 92-115 64-87 (272)
485 3eie_A Vacuolar protein sortin 93.5 0.12 4E-06 42.6 5.7 24 92-115 51-74 (322)
486 1wb9_A DNA mismatch repair pro 93.4 0.048 1.7E-06 51.0 3.6 24 92-115 607-630 (800)
487 2r62_A Cell division protease 93.3 0.022 7.7E-07 45.3 1.0 22 94-115 46-67 (268)
488 3auy_A DNA double-strand break 93.3 0.048 1.6E-06 46.1 3.1 21 93-113 26-46 (371)
489 3d3q_A TRNA delta(2)-isopenten 93.2 0.052 1.8E-06 45.8 3.2 24 93-116 8-31 (340)
490 1sky_E F1-ATPase, F1-ATP synth 93.2 0.057 1.9E-06 47.6 3.5 24 92-115 151-174 (473)
491 3co5_A Putative two-component 93.2 0.041 1.4E-06 39.9 2.2 23 93-115 28-50 (143)
492 2qby_B CDC6 homolog 3, cell di 93.2 0.068 2.3E-06 44.4 3.9 24 92-115 45-68 (384)
493 1xwi_A SKD1 protein; VPS4B, AA 93.2 0.15 5.1E-06 42.2 5.9 24 92-115 45-68 (322)
494 1bif_A 6-phosphofructo-2-kinas 93.1 0.05 1.7E-06 47.5 3.1 24 92-115 39-62 (469)
495 1ewq_A DNA mismatch repair pro 93.1 0.048 1.7E-06 50.8 3.1 23 93-115 577-599 (765)
496 3uk6_A RUVB-like 2; hexameric 93.1 0.078 2.7E-06 44.0 4.1 24 92-115 70-93 (368)
497 1zcb_A G alpha I/13; GTP-bindi 93.1 0.054 1.9E-06 46.0 3.2 23 91-113 32-54 (362)
498 2z4s_A Chromosomal replication 93.1 0.054 1.8E-06 47.0 3.2 24 92-115 130-153 (440)
499 2h92_A Cytidylate kinase; ross 93.1 0.062 2.1E-06 41.3 3.3 23 93-115 4-26 (219)
500 4b4t_M 26S protease regulatory 93.0 0.085 2.9E-06 46.0 4.4 25 92-116 215-239 (434)
No 1
>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*
Probab=99.67 E-value=1.6e-17 Score=147.59 Aligned_cols=157 Identities=20% Similarity=0.101 Sum_probs=78.0
Q ss_pred cccchhhhhhcCCCChhhhhhccceeecCCCCCCCCCCChHHHHHHHHHhhhhhHHHHHhcccccCCCCCCCCeEEEEec
Q 029512 21 SILSFVEDNLLGRRRPIELRRAGYNIELSAPLDNIPFSTSSERERIEENIFRNKLEFFAAAKVSSSFPAPDLPEIAFAGR 100 (192)
Q Consensus 21 ~~l~~~~~~l~~r~~li~~~~~~~~~~l~~~~e~i~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~lvG~ 100 (192)
+.++.....| |..++.+.. .+++.+|||+|+++.............+................. ....+|+++|+
T Consensus 167 G~ls~~i~~l--r~~L~~~~a-~iea~iDf~eedi~~~~~~~l~~~i~~l~~~l~~~~~~~~~~~~~--r~~~kV~ivG~ 241 (476)
T 3gee_A 167 GDLSVRLGGL--REQLIRSCA-LIELELDFSEEDVEFQSRDELTMQIETLRSEVNRLIDSYQHGRIV--SEGVSTVIAGK 241 (476)
T ss_dssp THHHHHHHHH--HTHHHHHHH-TTTTCSSCCSSCCSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHCEEEEEECC
T ss_pred CcHHHHHHHH--HHHHHHHHH-HhheecCCCcccccchhHHHHHHHHHHHHHHHHHHHHHHHhhHhh--cCCCEEEEECC
Confidence 3344444555 667788777 799999999998887654432222222211111112111111111 12458999999
Q ss_pred CCCcHHHHHHHHhhccCceeecCCCCceeEEEEE---eeCCeEEEEECCCCCCCCChHHHHHHHHHHHhhhccCceeEEE
Q 029512 101 SNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFF---KLGTKLCLVDLPGYGFAYAKEEVKDAWEELVSISYRNFWSCTC 177 (192)
Q Consensus 101 ~n~GKStlin~L~~~~~~~~~~~~~g~T~~~~~~---~~~~~~~lvDtPG~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~ 177 (192)
+|||||||+|+|++. ....+++.+|+|++.... ..+..+.+|||||+.... + ..+.+.--..+...+.+|+++
T Consensus 242 ~nvGKSSLln~L~~~-~~a~vs~~~gtT~d~~~~~i~~~g~~l~liDT~G~~~~~--~-~ve~~gi~~~~~~~~~aD~vl 317 (476)
T 3gee_A 242 PNAGKSTLLNTLLGQ-ERAIVSHMPGTTRDYIEECFIHDKTMFRLTDTAGLREAG--E-EIEHEGIRRSRMKMAEADLIL 317 (476)
T ss_dssp TTSSHHHHHHHCC-------------------CEEEEETTEEEEEEC-----------------------CCCSSCSEEE
T ss_pred CCCCHHHHHHHHhCC-CCcccCCCCCceEEEEEEEEEECCeEEEEEECCCCCcch--h-HHHHHHHHHHHhhcccCCEEE
Confidence 999999999999997 457789999999987432 247889999999986521 1 111110001145678899999
Q ss_pred EEEecCCce
Q 029512 178 FLIYIFYTN 186 (192)
Q Consensus 178 ~vvD~s~~~ 186 (192)
+|+|++++.
T Consensus 318 ~VvD~s~~~ 326 (476)
T 3gee_A 318 YLLDLGTER 326 (476)
T ss_dssp EEEETTTCS
T ss_pred EEEECCCCc
Confidence 999998764
No 2
>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}
Probab=99.66 E-value=9.2e-17 Score=138.75 Aligned_cols=91 Identities=19% Similarity=0.180 Sum_probs=70.6
Q ss_pred CCCCCCeEEEEecCCCcHHHHHHHHhhccCceeecCCCCceeEEEEEe---eCCeEEEEECCCCCCCC-ChHHHHHHHHH
Q 029512 88 PAPDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFK---LGTKLCLVDLPGYGFAY-AKEEVKDAWEE 163 (192)
Q Consensus 88 ~~~~~~~i~lvG~~n~GKStlin~L~~~~~~~~~~~~~g~T~~~~~~~---~~~~~~lvDtPG~~~~~-~~~~~~~~~~~ 163 (192)
.+.+..+|+|||+||||||||+|+|++.. +.++++||+|+++.... .+.++.++||||+.... ......+ .
T Consensus 68 ~k~g~a~V~ivG~PNvGKSTL~n~Lt~~~--~~v~~~pftT~~~~~g~~~~~~~~i~l~D~pGl~~~a~~~~~~g~---~ 142 (376)
T 4a9a_A 68 ARTGVASVGFVGFPSVGKSTLLSKLTGTE--SEAAEYEFTTLVTVPGVIRYKGAKIQMLDLPGIIDGAKDGRGRGK---Q 142 (376)
T ss_dssp CBCSSEEEEEECCCCHHHHHHHHHHHSBC--CCGGGTCSSCCCEEEEEEEETTEEEEEEECGGGCCC-----CHHH---H
T ss_pred eecCCCeEEEECCCCCCHHHHHHHHhCCC--CcccCCCCceeeeeeEEEEeCCcEEEEEeCCCccCCchhhhHHHH---H
Confidence 44567799999999999999999999984 77899999999987543 47899999999997632 2222222 2
Q ss_pred HHhhhccCceeEEEEEEecCCc
Q 029512 164 LVSISYRNFWSCTCFLIYIFYT 185 (192)
Q Consensus 164 ~~~l~~~~~~~~v~~vvD~s~~ 185 (192)
+ +...+.+|++++|+|+++|
T Consensus 143 ~--l~~i~~ad~il~vvD~~~p 162 (376)
T 4a9a_A 143 V--IAVARTCNLLFIILDVNKP 162 (376)
T ss_dssp H--HHHHHHCSEEEEEEETTSH
T ss_pred H--HHHHHhcCccccccccCcc
Confidence 2 4556779999999999986
No 3
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=99.63 E-value=9.7e-16 Score=118.38 Aligned_cols=101 Identities=42% Similarity=0.730 Sum_probs=68.0
Q ss_pred cCCCCCCCCeEEEEecCCCcHHHHHHHHhhccCceeecCCCCceeEEEEEeeCCeEEEEECCCCCCCCChHHHHHHHHHH
Q 029512 85 SSFPAPDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEEL 164 (192)
Q Consensus 85 ~~~~~~~~~~i~lvG~~n~GKStlin~L~~~~~~~~~~~~~g~T~~~~~~~~~~~~~lvDtPG~~~~~~~~~~~~~~~~~ 164 (192)
...+....++|+++|.+|+|||||+|+|++..........+++|++...+..+..+.+|||||++...........+..+
T Consensus 16 ~~~~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~ 95 (195)
T 1svi_A 16 EQYPEGGLPEIALAGRSNVGKSSFINSLINRKNLARTSSKPGKTQTLNFYIINDELHFVDVPGYGFAKVSKSEREAWGRM 95 (195)
T ss_dssp GGSCCSCCCEEEEEEBTTSSHHHHHHHHHTC-------------CCEEEEEETTTEEEEECCCBCCCSSCHHHHHHHHHH
T ss_pred hhCCCCCCCEEEEECCCCCCHHHHHHHHhCCCCccccCCCCCceeeEEEEEECCcEEEEECCCCCccccCHHHHHHHHHH
Confidence 33445567899999999999999999999874356677888999988877778899999999988754443333344444
Q ss_pred Hh--hhccCceeEEEEEEecCCc
Q 029512 165 VS--ISYRNFWSCTCFLIYIFYT 185 (192)
Q Consensus 165 ~~--l~~~~~~~~v~~vvD~s~~ 185 (192)
.. +.....++++++|+|++++
T Consensus 96 ~~~~~~~~~~~~~~i~v~d~~~~ 118 (195)
T 1svi_A 96 IETYITTREELKAVVQIVDLRHA 118 (195)
T ss_dssp HHHHHHHCTTEEEEEEEEETTSC
T ss_pred HHHHHhhhhcCCEEEEEEECCCC
Confidence 33 4556678999999998764
No 4
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=99.63 E-value=1.5e-15 Score=120.03 Aligned_cols=100 Identities=41% Similarity=0.633 Sum_probs=76.9
Q ss_pred CCCCCCCCeEEEEecCCCcHHHHHHHHhhccCceeecCCCCceeEEEEEeeC----CeEEEEECCCCCCCCChHHHHHHH
Q 029512 86 SFPAPDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLG----TKLCLVDLPGYGFAYAKEEVKDAW 161 (192)
Q Consensus 86 ~~~~~~~~~i~lvG~~n~GKStlin~L~~~~~~~~~~~~~g~T~~~~~~~~~----~~~~lvDtPG~~~~~~~~~~~~~~ 161 (192)
..+....++|+++|.+|+|||||+|+|++......++..+|+|++....... ..+.||||||+..+.........|
T Consensus 23 ~~~~~~~~~i~v~G~~~~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~ 102 (223)
T 4dhe_A 23 DLPPTVQPEIAFAGRSNAGKSTAINVLCNQKRLAFASKTPGRTQHINYFSVGPAAEPVAHLVDLPGYGYAEVPGAAKAHW 102 (223)
T ss_dssp GSCCCCSCEEEEEESCHHHHHHHHHHHTTCSSSSCTTCCCCSCCCEEEEEESCTTSCSEEEEECCCCCSSCCCSTHHHHH
T ss_pred hCCCCCCCEEEEEcCCCCCHHHHHHHHhCCCcceeecCCCCcccceEEEEecCCCCCcEEEEcCCCCCcccCChhhHHHH
Confidence 3445567899999999999999999999984356788899999988766554 789999999987753333334445
Q ss_pred HHHHh--hhccCceeEEEEEEecCCc
Q 029512 162 EELVS--ISYRNFWSCTCFLIYIFYT 185 (192)
Q Consensus 162 ~~~~~--l~~~~~~~~v~~vvD~s~~ 185 (192)
..+.. +.....+|++++|+|++++
T Consensus 103 ~~~~~~~~~~~~~~d~vi~v~d~~~~ 128 (223)
T 4dhe_A 103 EQLLSSYLQTRPQLCGMILMMDARRP 128 (223)
T ss_dssp HHHHHHHHHHCTTEEEEEEEEETTSC
T ss_pred HHHHHHHHhcCcCcCEEEEEEeCCCC
Confidence 44444 5667779999999999763
No 5
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=99.62 E-value=7e-15 Score=113.00 Aligned_cols=100 Identities=39% Similarity=0.632 Sum_probs=78.8
Q ss_pred cCCCCCCCCeEEEEecCCCcHHHHHHHHhhccCceeecCCCCceeEEEEEeeCCeEEEEECCCCCCCCChHHHHHHHHHH
Q 029512 85 SSFPAPDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEEL 164 (192)
Q Consensus 85 ~~~~~~~~~~i~lvG~~n~GKStlin~L~~~~~~~~~~~~~g~T~~~~~~~~~~~~~lvDtPG~~~~~~~~~~~~~~~~~ 164 (192)
...+....++|+++|.+|+|||||+|+|++. .....++.+++|+.......+..+.+|||||+............+..+
T Consensus 16 ~~~~~~~~~~i~v~G~~~~GKSsli~~l~~~-~~~~~~~~~~~t~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~ 94 (195)
T 3pqc_A 16 GDYPPPLKGEVAFVGRSNVGKSSLLNALFNR-KIAFVSKTPGKTRSINFYLVNSKYYFVDLPGYGYAKVSKKERMLWKRL 94 (195)
T ss_dssp TCCCCCTTCEEEEEEBTTSSHHHHHHHHHTS-CCSCCCSSCCCCCCEEEEEETTTEEEEECCCBSSSCCCHHHHHHHHHH
T ss_pred hhCCCCCCeEEEEECCCCCCHHHHHHHHHcC-ccccccCCCCCccCeEEEEECCcEEEEECCCCccccCChhhHHHHHHH
Confidence 3445566789999999999999999999998 466778888999998888788899999999987754444444445554
Q ss_pred Hh--hhccCceeEEEEEEecCCc
Q 029512 165 VS--ISYRNFWSCTCFLIYIFYT 185 (192)
Q Consensus 165 ~~--l~~~~~~~~v~~vvD~s~~ 185 (192)
.. +.....++++++|+|++.+
T Consensus 95 ~~~~~~~~~~~~~vi~v~d~~~~ 117 (195)
T 3pqc_A 95 VEDYFKNRWSLQMVFLLVDGRIP 117 (195)
T ss_dssp HHHHHHHCTTEEEEEEEEETTSC
T ss_pred HHHHHhcCcCceEEEEEecCCCC
Confidence 44 5566788999999998754
No 6
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=99.57 E-value=2.2e-15 Score=129.67 Aligned_cols=161 Identities=19% Similarity=0.166 Sum_probs=77.6
Q ss_pred ccCCCCcccchhhhhhcCCCChhhhhhccceeecCCCCCCCCCCChHHHHHHHHHhhh--hhHHHHHhcc--cccCCCCC
Q 029512 15 AIQPSPSILSFVEDNLLGRRRPIELRRAGYNIELSAPLDNIPFSTSSERERIEENIFR--NKLEFFAAAK--VSSSFPAP 90 (192)
Q Consensus 15 ~~~~~~~~l~~~~~~l~~r~~li~~~~~~~~~~l~~~~e~i~~~~~~~~~~i~~~~~~--~~~~~~~~~~--~~~~~~~~ 90 (192)
++|+..+++.|..+++ + .+.++.+....+..+.|.|. ....+++.+..++.. ..+......+ .+..+.+.
T Consensus 104 ~~q~~la~l~~~~~rl-~--~~~~l~~~~~~i~~~g~ge~---~~e~~~~~~~~~i~~l~~~l~~~~~~r~~~r~~r~~~ 177 (364)
T 2qtf_A 104 KMQIELARLKYELPII-K--ETYTKSKIGEQQGPLGAGTY---GVESTIKFYKRRINKLMKELESIKIFKEKSIESNKRN 177 (364)
T ss_dssp HHHHHHHHHHHHHHHH-H--HC------------------------CHHHHHHHHHHHHHHHHHHHHC------------
T ss_pred hHHHHHHHHhhhchhh-h--hhhHHHHhcCCCCcCCcCHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Confidence 4566777788888888 2 23344443334444444442 111224444444422 2222222211 22223334
Q ss_pred CCCeEEEEecCCCcHHHHHHHHhhccCceeecCCCCceeEEEEE---eeCCeEEEEECCCCCCCCChHHHHHHHHHHHhh
Q 029512 91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFF---KLGTKLCLVDLPGYGFAYAKEEVKDAWEELVSI 167 (192)
Q Consensus 91 ~~~~i~lvG~~n~GKStlin~L~~~~~~~~~~~~~g~T~~~~~~---~~~~~~~lvDtPG~~~~~~~~~~~~~~~~~~~l 167 (192)
+.+.|+++|++|+|||||+|+|++.. ..+++.+++|+++... ..+..+.++||||+....+.+ ..+.+... +
T Consensus 178 ~~~~V~lvG~~naGKSTLln~L~~~~--~~~~~~~~~T~d~~~~~i~~~g~~v~l~DT~G~i~~lp~~-lve~f~~t--l 252 (364)
T 2qtf_A 178 NIPSIGIVGYTNSGKTSLFNSLTGLT--QKVDTKLFTTMSPKRYAIPINNRKIMLVDTVGFIRGIPPQ-IVDAFFVT--L 252 (364)
T ss_dssp -CCEEEEECBTTSSHHHHHHHHHCC-------------CCSCEEEEEETTEEEEEEECCCBCSSCCGG-GHHHHHHH--H
T ss_pred CCcEEEEECCCCCCHHHHHHHHHCCC--ccccCCcccccCCEEEEEEECCEEEEEEeCCCchhcCCHH-HHHHHHHH--H
Confidence 56679999999999999999999974 4667788888765322 236789999999986543332 22223333 3
Q ss_pred hccCceeEEEEEEecCCce
Q 029512 168 SYRNFWSCTCFLIYIFYTN 186 (192)
Q Consensus 168 ~~~~~~~~v~~vvD~s~~~ 186 (192)
.....+|.+++|+|+++++
T Consensus 253 ~~~~~aD~il~VvD~s~~~ 271 (364)
T 2qtf_A 253 SEAKYSDALILVIDSTFSE 271 (364)
T ss_dssp HGGGGSSEEEEEEETTSCH
T ss_pred HHHHhCCEEEEEEECCCCc
Confidence 4567789999999998764
No 7
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}
Probab=99.53 E-value=8e-16 Score=136.18 Aligned_cols=155 Identities=19% Similarity=0.160 Sum_probs=87.1
Q ss_pred CcccchhhhhhcCCCChhhhhhccceeecCCCCCCCCCCChHHHHHHHHHhhhhhHH-HHHhcccccCCCCCCCCeEEEE
Q 029512 20 PSILSFVEDNLLGRRRPIELRRAGYNIELSAPLDNIPFSTSSERERIEENIFRNKLE-FFAAAKVSSSFPAPDLPEIAFA 98 (192)
Q Consensus 20 ~~~l~~~~~~l~~r~~li~~~~~~~~~~l~~~~e~i~~~~~~~~~~i~~~~~~~~~~-~~~~~~~~~~~~~~~~~~i~lv 98 (192)
.+.+......+ |..++++.. .+++.+|+++ +++.............+. ..+. ........... ....+|+++
T Consensus 158 ~g~~~~~~~~~--r~~l~~~~a-~iEa~iDf~e-d~~~~~~~~~~~~i~~l~-~~l~~~~~~~~~~~~~--r~~~kV~iv 230 (462)
T 3geh_A 158 QGKLAHPIRQL--RANCLDILA-EIEARIDFEE-DLPPLDDEAIISDIENIA-AEISQLLATKDKGELL--RTGLKVAIV 230 (462)
T ss_dssp HTTTHHHHHHH--HHHHHHHHH-HHHHHTTSSS-SSCCCCTTTHHHHHHHHH-HHHHHHTTTHHHHHHH--HHCEEEEEE
T ss_pred chhHHHHHHHH--HHHHHHHHH-HHHhhccccc-cCChhhHHHHHHHHHHHH-HHHHHHHHHhhhhhhh--cCCCEEEEE
Confidence 34444555555 566777766 6899999998 565544332211111111 1111 11111110000 124589999
Q ss_pred ecCCCcHHHHHHHHhhccCceeecCCCCceeEEE---EEeeCCeEEEEECCCCCCCCChHHHHHHHHHHHhhhccCceeE
Q 029512 99 GRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTIN---FFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVSISYRNFWSC 175 (192)
Q Consensus 99 G~~n~GKStlin~L~~~~~~~~~~~~~g~T~~~~---~~~~~~~~~lvDtPG~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 175 (192)
|++|||||||+|+|++. ....+++.+++|++.. ....+..+.+|||||+..... ..+.+.--..+...+.+|+
T Consensus 231 G~~nvGKSSLln~L~~~-~~a~v~~~~gtT~d~~~~~i~~~g~~v~liDT~G~~~~~~---~ve~~gi~~~~~~~~~aD~ 306 (462)
T 3geh_A 231 GRPNVGKSSLLNAWSQS-DRAIVTDLPGTTRDVVESQLVVGGIPVQVLDTAGIRETSD---QVEKIGVERSRQAANTADL 306 (462)
T ss_dssp ECTTSSHHHHHHHHHHH-HBSCCSCCTTCCHHHHHHEEEETTEEEEECC-----------------------CCCCSCSE
T ss_pred cCCCCCHHHHHHHHhCC-CcccccCCCCeeEEEEEEEEEECCEEEEEEECCccccchh---HHHHHHHHHHhhhhhcCCE
Confidence 99999999999999997 4567888899998763 333578899999999865211 1111100001456678999
Q ss_pred EEEEEecCCc
Q 029512 176 TCFLIYIFYT 185 (192)
Q Consensus 176 v~~vvD~s~~ 185 (192)
+++|+|++++
T Consensus 307 vl~VvD~s~~ 316 (462)
T 3geh_A 307 VLLTIDAATG 316 (462)
T ss_dssp EEEEEETTTC
T ss_pred EEEEeccCCC
Confidence 9999999865
No 8
>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*
Probab=99.50 E-value=1.6e-15 Score=134.89 Aligned_cols=139 Identities=22% Similarity=0.270 Sum_probs=86.1
Q ss_pred CCChhhhhhccceeecCCCCCCCCCCChHHHHHHHHHh--hhhhHH-HHHhcccccCCCCCCCCeEEEEecCCCcHHHHH
Q 029512 33 RRRPIELRRAGYNIELSAPLDNIPFSTSSERERIEENI--FRNKLE-FFAAAKVSSSFPAPDLPEIAFAGRSNVGKSSML 109 (192)
Q Consensus 33 r~~li~~~~~~~~~~l~~~~e~i~~~~~~~~~~i~~~~--~~~~~~-~~~~~~~~~~~~~~~~~~i~lvG~~n~GKStli 109 (192)
|..++.+.. .++..+|+|+| ++.... + +...+ ....+. ........... ....+|+++|+||||||||+
T Consensus 189 r~~l~~~~~-~ie~~idf~ee-i~~~~~---~-i~~~~~~l~~eL~~l~~~~~~~~~~--r~~~kV~ivG~pnvGKSSLl 260 (482)
T 1xzp_A 189 RRELIEVLA-EIRVELDYPDE-IETNTG---E-VVTRLERIKEKLTEELKKADAGILL--NRGLRMVIVGKPNVGKSTLL 260 (482)
T ss_dssp HHHHHHHHH-HHHHHHHSTTT-CCCCHH---H-HHHHHHHHHHHHHHHHHHHHHHHHH--HHCEEEEEECCHHHHTCHHH
T ss_pred HHHHHHHHH-HhhhcCCCCcc-ccchHH---H-HHHHHHHHHHHHHHHHHhhhhhhhc--cCCCEEEEECcCCCcHHHHH
Confidence 444555554 57778999987 664221 1 22222 111121 11111111111 12469999999999999999
Q ss_pred HHHhhccCceeecCCCCceeEEE---EEeeCCeEEEEECCCCC-CCCC---hHHHHHHHHHHHhhhccCceeEEEEEEec
Q 029512 110 NALTRQWGVVRTSDKPGLTQTIN---FFKLGTKLCLVDLPGYG-FAYA---KEEVKDAWEELVSISYRNFWSCTCFLIYI 182 (192)
Q Consensus 110 n~L~~~~~~~~~~~~~g~T~~~~---~~~~~~~~~lvDtPG~~-~~~~---~~~~~~~~~~~~~l~~~~~~~~v~~vvD~ 182 (192)
|+|++. ..+.+++.+|+|++.. ....+..+.+|||||+. .... ...+...+. ..+.+|++++|+|+
T Consensus 261 n~L~~~-~~a~vs~~~gTT~d~~~~~i~~~g~~~~l~DTaG~~~~~~~~ve~~gi~~~~~------~~~~aD~vl~VvD~ 333 (482)
T 1xzp_A 261 NRLLNE-DRAIVTDIPGTTRDVISEEIVIRGILFRIVDTAGVRSETNDLVERLGIERTLQ------EIEKADIVLFVLDA 333 (482)
T ss_dssp HHHHHH-TBCCCCCSSCCSSCSCCEEEEETTEEEEEEESSCCCSSCCTTCCCCCHHHHHH------HHHHCSEEEEEEET
T ss_pred HHHHCC-CCCccCCCCCeeeeeEEEEEecCCeEEEEEECCCccccchhhHHHHHHHHHHH------HhhcccEEEEEecC
Confidence 999997 4577899999998763 22247889999999987 4321 111222322 23458999999999
Q ss_pred CCce
Q 029512 183 FYTN 186 (192)
Q Consensus 183 s~~~ 186 (192)
+.+.
T Consensus 334 s~~~ 337 (482)
T 1xzp_A 334 SSPL 337 (482)
T ss_dssp TSCC
T ss_pred CCCC
Confidence 8763
No 9
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=99.49 E-value=1.2e-13 Score=113.29 Aligned_cols=88 Identities=23% Similarity=0.234 Sum_probs=64.1
Q ss_pred CeEEEEecCCCcHHHHHHHHhhccCceeecCCCCceeEEEEEe---eCCeEEEEECCCCCCCCCh----HHHHHHHHHHH
Q 029512 93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFK---LGTKLCLVDLPGYGFAYAK----EEVKDAWEELV 165 (192)
Q Consensus 93 ~~i~lvG~~n~GKStlin~L~~~~~~~~~~~~~g~T~~~~~~~---~~~~~~lvDtPG~~~~~~~----~~~~~~~~~~~ 165 (192)
++|+++|.+|||||||+|+|+|.. ..+++.+|+|.+..... .+..+.+|||||+...... .........++
T Consensus 2 ~kI~lvG~~n~GKSTL~n~L~g~~--~~v~~~pg~Tv~~~~~~~~~~~~~~~lvDtpG~~~~~~~~~~~~~~e~i~~~~~ 79 (256)
T 3iby_A 2 THALLIGNPNCGKTTLFNALTNAN--QRVGNWPGVTVEKKTGEFLLGEHLIEITDLPGVYSLVANAEGISQDEQIAAQSV 79 (256)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTS--EEEEECTTSSSEEEEEEEEETTEEEEEEECCCCSSCC------CHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHCCC--CCccCCCCceEEEEEEEEEECCeEEEEEeCCCcccccccccCCCHHHHHHHHHH
Confidence 689999999999999999999974 77888999997765333 3678999999998653221 11111222222
Q ss_pred hhhccCceeEEEEEEecCCc
Q 029512 166 SISYRNFWSCTCFLIYIFYT 185 (192)
Q Consensus 166 ~l~~~~~~~~v~~vvD~s~~ 185 (192)
....+|++++|+|++.+
T Consensus 80 ---~~~~~d~vi~VvDas~~ 96 (256)
T 3iby_A 80 ---IDLEYDCIINVIDACHL 96 (256)
T ss_dssp ---HHSCCSEEEEEEEGGGH
T ss_pred ---hhCCCCEEEEEeeCCCc
Confidence 12568999999999864
No 10
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=99.45 E-value=1.4e-13 Score=115.47 Aligned_cols=94 Identities=22% Similarity=0.197 Sum_probs=67.5
Q ss_pred CCCCeEEEEecCCCcHHHHHHHHhhccCceeecCCCCceeEEEEEe---e-CCeEEEEECCCCCCCCChHHHHHHHHHHH
Q 029512 90 PDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFK---L-GTKLCLVDLPGYGFAYAKEEVKDAWEELV 165 (192)
Q Consensus 90 ~~~~~i~lvG~~n~GKStlin~L~~~~~~~~~~~~~g~T~~~~~~~---~-~~~~~lvDtPG~~~~~~~~~~~~~~~~~~ 165 (192)
++...|+++|.+|||||||+|+|++. ....++..+++|++..... . +..+.+|||||+..+.....+.+.+....
T Consensus 8 ~~~g~v~ivG~~nvGKSTLin~l~g~-~~~i~s~~~~tT~~~~~~~~~~~~~~~i~lvDTPG~~~~~~~~~l~~~~~~~~ 86 (308)
T 3iev_A 8 MKVGYVAIVGKPNVGKSTLLNNLLGT-KVSIISPKAGTTRMRVLGVKNIPNEAQIIFLDTPGIYEPKKSDVLGHSMVEIA 86 (308)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHTS-CCSCCCSSSCCCCSCEEEEEEETTTEEEEEEECCCCCCCCTTCHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCcHHHHHHHHhCC-CccccCCCCCceeeEEEEEEecCCCCeEEEEECcCCCccccchhHHHHHHHHH
Confidence 34458999999999999999999998 5677888999998754322 3 67899999999976442222222222211
Q ss_pred hhhccCceeEEEEEEecCCc
Q 029512 166 SISYRNFWSCTCFLIYIFYT 185 (192)
Q Consensus 166 ~l~~~~~~~~v~~vvD~s~~ 185 (192)
....+.+|++++|+|++++
T Consensus 87 -~~~l~~aD~il~VvD~~~~ 105 (308)
T 3iev_A 87 -KQSLEEADVILFMIDATEG 105 (308)
T ss_dssp -HHHHHHCSEEEEEEETTTB
T ss_pred -HHHhhcCCEEEEEEeCCCC
Confidence 2223468999999999864
No 11
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=99.45 E-value=3.6e-13 Score=112.84 Aligned_cols=89 Identities=21% Similarity=0.219 Sum_probs=65.2
Q ss_pred CeEEEEecCCCcHHHHHHHHhhccCceeecCCCCceeEEEEE---eeCCeEEEEECCCCCCCCChHHHHHHHHHHHhhhc
Q 029512 93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFF---KLGTKLCLVDLPGYGFAYAKEEVKDAWEELVSISY 169 (192)
Q Consensus 93 ~~i~lvG~~n~GKStlin~L~~~~~~~~~~~~~g~T~~~~~~---~~~~~~~lvDtPG~~~~~~~~~~~~~~~~~~~l~~ 169 (192)
..|+++|.+|||||||+|+|++. ..+.++..+++|++.... ..+.++.+|||||+..+.. .+.+.+.... ...
T Consensus 8 g~V~ivG~~nvGKSTLln~l~g~-~~~ivs~~~~tTr~~i~~i~~~~~~~l~l~DTpG~~~~~~--~l~~~~~~~~-~~~ 83 (301)
T 1wf3_A 8 GFVAIVGKPNVGKSTLLNNLLGV-KVAPISPRPQTTRKRLRGILTEGRRQIVFVDTPGLHKPMD--ALGEFMDQEV-YEA 83 (301)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTS-CCSCCCSSSCCCCSCEEEEEEETTEEEEEEECCCCCCCCS--HHHHHHHHHH-HHH
T ss_pred CEEEEECCCCCCHHHHHHHHhCC-ceeeecCCCCceeEEEEEEEEeCCcEEEEecCccccchhh--HHHHHHHHHH-HHH
Confidence 47999999999999999999998 566778888888864322 2367899999999976432 2222222211 234
Q ss_pred cCceeEEEEEEecCCc
Q 029512 170 RNFWSCTCFLIYIFYT 185 (192)
Q Consensus 170 ~~~~~~v~~vvD~s~~ 185 (192)
.+.+|++++|+|++++
T Consensus 84 l~~ad~il~VvD~~~~ 99 (301)
T 1wf3_A 84 LADVNAVVWVVDLRHP 99 (301)
T ss_dssp TSSCSEEEEEEETTSC
T ss_pred HhcCCEEEEEEECCCC
Confidence 5678999999999764
No 12
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=99.45 E-value=2.2e-13 Score=112.49 Aligned_cols=89 Identities=19% Similarity=0.103 Sum_probs=64.7
Q ss_pred CCeEEEEecCCCcHHHHHHHHhhccCceeecCCCCceeEEEEEe---eCCeEEEEECCCCCCCCCh----HHHHHHHHHH
Q 029512 92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFK---LGTKLCLVDLPGYGFAYAK----EEVKDAWEEL 164 (192)
Q Consensus 92 ~~~i~lvG~~n~GKStlin~L~~~~~~~~~~~~~g~T~~~~~~~---~~~~~~lvDtPG~~~~~~~----~~~~~~~~~~ 164 (192)
.++|+++|.+|+|||||+|+|++.. ..+++.+|+|.+..... .+..+.+|||||+...... ......+..+
T Consensus 3 ~~~I~lvG~~n~GKSTLin~l~g~~--~~v~~~~g~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~e~i~~~~ 80 (274)
T 3i8s_A 3 KLTIGLIGNPNSGKTTLFNQLTGSR--QRVGNWAGVTVERKEGQFSTTDHQVTLVDLPGTYSLTTISSQTSLDEQIACHY 80 (274)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHTTC--EEEEECTTSSSEEEEEEEECSSCEEEEEECCCCSCSCC----CCHHHHHHHHH
T ss_pred ccEEEEECCCCCCHHHHHHHHhCCC--cccCCCCCeeEEEEEEEEEeCCCceEEEECcCCCccccccccCCHHHHHHHHH
Confidence 3589999999999999999999984 68889999998865433 3678999999998653211 1111122222
Q ss_pred HhhhccCceeEEEEEEecCCc
Q 029512 165 VSISYRNFWSCTCFLIYIFYT 185 (192)
Q Consensus 165 ~~l~~~~~~~~v~~vvD~s~~ 185 (192)
...+.+|++++|+|++..
T Consensus 81 ---~~~~~~d~ii~VvD~~~~ 98 (274)
T 3i8s_A 81 ---ILSGDADLLINVVDASNL 98 (274)
T ss_dssp ---HHHTCCSEEEEEEEGGGH
T ss_pred ---HhhcCCCEEEEEecCCCh
Confidence 223578999999999764
No 13
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=99.44 E-value=2e-13 Score=119.67 Aligned_cols=87 Identities=22% Similarity=0.214 Sum_probs=53.4
Q ss_pred CeEEEEecCCCcHHHHHHHHhhccCceeecCCCCceeEEEEEe---eCCeEEEEECCCCCCCC---ChHHHHHHHHHHHh
Q 029512 93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFK---LGTKLCLVDLPGYGFAY---AKEEVKDAWEELVS 166 (192)
Q Consensus 93 ~~i~lvG~~n~GKStlin~L~~~~~~~~~~~~~g~T~~~~~~~---~~~~~~lvDtPG~~~~~---~~~~~~~~~~~~~~ 166 (192)
++|+++|.||||||||+|+|++. ..+.+++.+|+|++..... .+..+.+|||||+.... -.+.....+
T Consensus 2 ~~v~ivG~pnvGKStL~nrl~~~-~~~~v~~~~g~T~d~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~~~~~~~----- 75 (439)
T 1mky_A 2 ATVLIVGRPNVGKSTLFNKLVKK-KKAIVEDEEGVTRDPVQDTVEWYGKTFKLVDTCGVFDNPQDIISQKMKEVT----- 75 (439)
T ss_dssp CEEEEECCTTSSHHHHHHHHHC---------------CCSEEEEEETTEEEEEEECTTTTSSGGGCCCHHHHHHH-----
T ss_pred CEEEEECCCCCCHHHHHHHHhCC-CCceecCCCCCccceeeEEEEECCeEEEEEECCCccccccchHHHHHHHHH-----
Confidence 68999999999999999999997 4567899999998864332 47789999999986421 112222222
Q ss_pred hhccCceeEEEEEEecCCc
Q 029512 167 ISYRNFWSCTCFLIYIFYT 185 (192)
Q Consensus 167 l~~~~~~~~v~~vvD~s~~ 185 (192)
....+.+|++++|+|++..
T Consensus 76 ~~~~~~ad~il~V~D~~~~ 94 (439)
T 1mky_A 76 LNMIREADLVLFVVDGKRG 94 (439)
T ss_dssp HHHHTTCSEEEEEEETTTC
T ss_pred HHHHHhCCEEEEEEECCCC
Confidence 2234678999999998753
No 14
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=99.43 E-value=4.8e-13 Score=107.53 Aligned_cols=92 Identities=17% Similarity=0.101 Sum_probs=58.3
Q ss_pred CCCCeEEEEecCCCcHHHHHHHHhhccCceeecCCC--CceeEEEEE---eeCCeEEEEECCCCCCCC-ChHHHHHHHHH
Q 029512 90 PDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKP--GLTQTINFF---KLGTKLCLVDLPGYGFAY-AKEEVKDAWEE 163 (192)
Q Consensus 90 ~~~~~i~lvG~~n~GKStlin~L~~~~~~~~~~~~~--g~T~~~~~~---~~~~~~~lvDtPG~~~~~-~~~~~~~~~~~ 163 (192)
...++|+|+|.+|+|||||+|+|++.. ...+..+ ++|.++... ..+..+.||||||+.+.. ........+..
T Consensus 27 ~~~~~i~lvG~~g~GKStlin~l~g~~--~~~~~~~~~~~t~~~~~~~~~~~~~~i~liDTpG~~~~~~~~~~~~~~~~~ 104 (239)
T 3lxx_A 27 NSQLRIVLVGKTGAGKSATGNSILGRK--VFHSGTAAKSITKKCEKRSSSWKETELVVVDTPGIFDTEVPNAETSKEIIR 104 (239)
T ss_dssp -CEEEEEEECCTTSSHHHHHHHHHTSC--CSCC-------CCSCEEEEEEETTEEEEEEECCSCC-----CHHHHHHHHH
T ss_pred CCceEEEEECCCCCCHHHHHHHHcCCC--cCccCCCCCceeeeEEEEEEEeCCceEEEEECCCccCCCCCHHHHHHHHHH
Confidence 456799999999999999999999974 2333333 566655432 246789999999998632 22333333332
Q ss_pred HHhhhccCceeEEEEEEecCC
Q 029512 164 LVSISYRNFWSCTCFLIYIFY 184 (192)
Q Consensus 164 ~~~l~~~~~~~~v~~vvD~s~ 184 (192)
.. ....+.++++++|+|++.
T Consensus 105 ~~-~~~~~~~~~~l~v~d~~~ 124 (239)
T 3lxx_A 105 CI-LLTSPGPHALLLVVPLGR 124 (239)
T ss_dssp HH-HHTTTCCSEEEEEEETTC
T ss_pred HH-HhcCCCCcEEEEEeeCCC
Confidence 22 233467899999999854
No 15
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=99.40 E-value=1.7e-12 Score=99.20 Aligned_cols=91 Identities=26% Similarity=0.220 Sum_probs=62.1
Q ss_pred CCeEEEEecCCCcHHHHHHHHhhccCceeecCCCCceeEEEE---EeeCCeEEEEECCCCCCCCChHHHHHHHHHHHhhh
Q 029512 92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINF---FKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVSIS 168 (192)
Q Consensus 92 ~~~i~lvG~~n~GKStlin~L~~~~~~~~~~~~~g~T~~~~~---~~~~~~~~lvDtPG~~~~~~~~~~~~~~~~~~~l~ 168 (192)
..+|+++|.+|||||||+|+|++. ....++..+++|++... ...+..+.+|||||+......-.. ..+... +.
T Consensus 4 ~~ki~ivG~~g~GKStLl~~l~~~-~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~-~~~~~~--~~ 79 (172)
T 2gj8_A 4 GMKVVIAGRPNAGKSSLLNALAGR-EAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLREASDEVER-IGIERA--WQ 79 (172)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTS-CCSCCCSSTTCCCSCEEEEEEETTEEEEEEECCCCSCCSSHHHH-HHHHHH--HH
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC-CcceeeCCCCceeceeeEEEEECCeEEEEEECCCcccchhHHHH-HHHHHH--HH
Confidence 458999999999999999999987 34456777888876432 223667999999998653221110 001111 22
Q ss_pred ccCceeEEEEEEecCCce
Q 029512 169 YRNFWSCTCFLIYIFYTN 186 (192)
Q Consensus 169 ~~~~~~~v~~vvD~s~~~ 186 (192)
..+.+|++++|+|++++.
T Consensus 80 ~~~~ad~~i~v~D~~~~~ 97 (172)
T 2gj8_A 80 EIEQADRVLFMVDGTTTD 97 (172)
T ss_dssp HHHTCSEEEEEEETTTCC
T ss_pred HHHhCCEEEEEEECCCCC
Confidence 345689999999998754
No 16
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=99.39 E-value=5.2e-13 Score=111.01 Aligned_cols=61 Identities=33% Similarity=0.610 Sum_probs=43.4
Q ss_pred CCCeEEEEecCCCcHHHHHHHHhhccCceeecCCCCceeEEEEEeeCCeEEEEECCCCCCCC
Q 029512 91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAY 152 (192)
Q Consensus 91 ~~~~i~lvG~~n~GKStlin~L~~~~~~~~~~~~~g~T~~~~~~~~~~~~~lvDtPG~~~~~ 152 (192)
...+++++|.||||||||+|+|++. ..+.+++.+|+|++.+.+..+..+.++||||+..+.
T Consensus 119 ~~~~v~~vG~~nvGKSsliN~l~~~-~~~~~~~~~g~T~~~~~~~~~~~~~l~DtpG~~~~~ 179 (282)
T 1puj_A 119 RAIRALIIGIPNVGKSTLINRLAKK-NIAKTGDRPGITTSQQWVKVGKELELLDTPGILWPK 179 (282)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHTS-CCC------------CCEEETTTEEEEECCCCCCSC
T ss_pred CCceEEEEecCCCchHHHHHHHhcC-ceeecCCCCCeeeeeEEEEeCCCEEEEECcCcCCCC
Confidence 4569999999999999999999998 567899999999998887788899999999998753
No 17
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=99.39 E-value=1.8e-12 Score=106.16 Aligned_cols=88 Identities=25% Similarity=0.263 Sum_probs=63.7
Q ss_pred CCeEEEEecCCCcHHHHHHHHhhccCceeecCCCCceeEEEEEe---eCCeEEEEECCCCCCCC--ChHHHHHHHHHHHh
Q 029512 92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFK---LGTKLCLVDLPGYGFAY--AKEEVKDAWEELVS 166 (192)
Q Consensus 92 ~~~i~lvG~~n~GKStlin~L~~~~~~~~~~~~~g~T~~~~~~~---~~~~~~lvDtPG~~~~~--~~~~~~~~~~~~~~ 166 (192)
.++|+++|.+|||||||+|+|++.. ..+++.+|+|.+..... .+..+.+|||||..... ..++ .....+.
T Consensus 5 ~~kI~lvG~~nvGKTsL~n~l~g~~--~~~~~~pg~tv~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~e--~v~~~~~- 79 (258)
T 3a1s_A 5 MVKVALAGCPNVGKTSLFNALTGTK--QYVANWPGVTVEKKEGVFTYKGYTINLIDLPGTYSLGYSSIDE--KIARDYL- 79 (258)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHTTC--EEEEECTTSCCEEEEEEEEETTEEEEEEECCCCSSCCSSSHHH--HHHHHHH-
T ss_pred ceEEEEECCCCCCHHHHHHHHHCCC--CcccCCCCceEEEEEEEEEECCeEEEEEECCCcCccCCCCHHH--HHHHHHH-
Confidence 3589999999999999999999974 55788899998765433 26789999999986522 2221 1112221
Q ss_pred hhccCceeEEEEEEecCCce
Q 029512 167 ISYRNFWSCTCFLIYIFYTN 186 (192)
Q Consensus 167 l~~~~~~~~v~~vvD~s~~~ 186 (192)
....+|++++|+|++..+
T Consensus 80 --~~~~~d~ii~V~D~t~~~ 97 (258)
T 3a1s_A 80 --LKGDADLVILVADSVNPE 97 (258)
T ss_dssp --HHSCCSEEEEEEETTSCH
T ss_pred --hhcCCCEEEEEeCCCchh
Confidence 125689999999998753
No 18
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=99.38 E-value=1.1e-12 Score=106.63 Aligned_cols=92 Identities=14% Similarity=0.012 Sum_probs=57.3
Q ss_pred CCCeEEEEecCCCcHHHHHHHHhhccCceeecC-CCCceeEEEEE---eeCCeEEEEECCCCCCCCChHHHHHHHHHHHh
Q 029512 91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSD-KPGLTQTINFF---KLGTKLCLVDLPGYGFAYAKEEVKDAWEELVS 166 (192)
Q Consensus 91 ~~~~i~lvG~~n~GKStlin~L~~~~~~~~~~~-~~g~T~~~~~~---~~~~~~~lvDtPG~~~~~~~~~~~~~~~~~~~ 166 (192)
...+|+|+|.+|||||||+|+|++.. ...... ..++|+.+... ..+..+.+|||||+........ ...+..+..
T Consensus 20 ~~l~I~lvG~~g~GKSSlin~l~~~~-~~~~~~~~~~~T~~~~~~~~~~~~~~i~liDTPG~~~~~~~~~-~~~~~~i~~ 97 (247)
T 3lxw_A 20 STRRLILVGRTGAGKSATGNSILGQR-RFFSRLGATSVTRACTTGSRRWDKCHVEVVDTPDIFSSQVSKT-DPGCEERGH 97 (247)
T ss_dssp CEEEEEEESSTTSSHHHHHHHHHTSC-CC---------CCSCEEEEEEETTEEEEEEECCSCSSTTHHHH-STTSHHHHH
T ss_pred CceEEEEECCCCCcHHHHHHHHhCCC-CccccCCCCCccccEEEEEEEECCcEEEEEECCCCCCCCCCcH-HHHHHHHHH
Confidence 35699999999999999999999974 333332 23567655432 3478899999999975322110 011111211
Q ss_pred --hhccCceeEEEEEEecCC
Q 029512 167 --ISYRNFWSCTCFLIYIFY 184 (192)
Q Consensus 167 --l~~~~~~~~v~~vvD~s~ 184 (192)
....+.+|++++|+|++.
T Consensus 98 ~~~~~~~~~d~il~V~d~~~ 117 (247)
T 3lxw_A 98 CYLLSAPGPHALLLVTQLGR 117 (247)
T ss_dssp HHHHHTTCCSEEEEEEETTB
T ss_pred HHHhcCCCCCEEEEEEeCCC
Confidence 233478899999999864
No 19
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=99.38 E-value=6.8e-13 Score=103.67 Aligned_cols=99 Identities=44% Similarity=0.639 Sum_probs=58.3
Q ss_pred CCCCCCCeEEEEecCCCcHHHHHHHHhhccCceeecCCCCceeEEEEEeeCCeEEEEECCCCCCCCChHHHHHHHHHHHh
Q 029512 87 FPAPDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVS 166 (192)
Q Consensus 87 ~~~~~~~~i~lvG~~n~GKStlin~L~~~~~~~~~~~~~g~T~~~~~~~~~~~~~lvDtPG~~~~~~~~~~~~~~~~~~~ 166 (192)
++.....+|+++|++|+|||||+|+|++......+.+.+|+|+....+..+..+.++||||+............|...+.
T Consensus 21 ~~~~~~~~v~lvG~~g~GKSTLl~~l~g~~~~~~~~~~~G~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~ 100 (210)
T 1pui_A 21 LPSDTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLFEVADGKRLVDLPGYGYAEVPEEMKRKWQRALG 100 (210)
T ss_dssp SSCSCSEEEEEEECTTSSHHHHHTTTCCC-------------CCEEEEEEETTEEEEECCCCC------CCHHHHHHHHH
T ss_pred CCCCCCcEEEEECCCCCCHHHHHHHHhCCCccccccCCCccceeeEEEEecCCEEEEECcCCcccccCHHHHHHHHHHHH
Confidence 33445679999999999999999999987424556778888877655444448899999998652111111122333222
Q ss_pred --hhccCceeEEEEEEecCCc
Q 029512 167 --ISYRNFWSCTCFLIYIFYT 185 (192)
Q Consensus 167 --l~~~~~~~~v~~vvD~s~~ 185 (192)
+.....++.+++++|++++
T Consensus 101 ~~~~~~~~~~~~~~v~d~~~~ 121 (210)
T 1pui_A 101 EYLEKRQSLQGLVVLMDIRHP 121 (210)
T ss_dssp HHHHHCTTEEEEEEEEETTSC
T ss_pred HHHHhhhcccEEEEEEECCCC
Confidence 4455678999999998764
No 20
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=99.38 E-value=2.8e-12 Score=105.29 Aligned_cols=89 Identities=22% Similarity=0.200 Sum_probs=64.2
Q ss_pred CCeEEEEecCCCcHHHHHHHHhhccCceeecCCCCceeEEEEEe---eCCeEEEEECCCCCCCCChHHHHHHHHHHHhhh
Q 029512 92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFK---LGTKLCLVDLPGYGFAYAKEEVKDAWEELVSIS 168 (192)
Q Consensus 92 ~~~i~lvG~~n~GKStlin~L~~~~~~~~~~~~~g~T~~~~~~~---~~~~~~lvDtPG~~~~~~~~~~~~~~~~~~~l~ 168 (192)
.++|+++|++|||||||+|+|++.. ..++..+|+|.+..... .+..+.+|||||+............+..+.
T Consensus 3 ~~~i~lvG~~g~GKTTL~n~l~g~~--~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~--- 77 (271)
T 3k53_A 3 LKTVALVGNPNVGKTTIFNALTGLR--QHVGNWPGVTVEKKEGIMEYREKEFLVVDLPGIYSLTAHSIDELIARNFI--- 77 (271)
T ss_dssp CEEEEEEECSSSSHHHHHHHHHTTC--EEEEECTTSSCEEEEEEEEETTEEEEEEECCCCSCCCSSCHHHHHHHHHH---
T ss_pred eeEEEEECCCCCCHHHHHHHHhCCC--cccCCCCCeEEEeeEEEEEECCceEEEEeCCCccccccCCHHHHHHHHhh---
Confidence 4589999999999999999999974 47888899888765333 367899999999865222111111222222
Q ss_pred ccCceeEEEEEEecCCc
Q 029512 169 YRNFWSCTCFLIYIFYT 185 (192)
Q Consensus 169 ~~~~~~~v~~vvD~s~~ 185 (192)
....+|++++|+|++..
T Consensus 78 ~~~~~d~vi~v~D~~~~ 94 (271)
T 3k53_A 78 LDGNADVIVDIVDSTCL 94 (271)
T ss_dssp HTTCCSEEEEEEEGGGH
T ss_pred hccCCcEEEEEecCCcc
Confidence 24578999999998763
No 21
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=99.37 E-value=1.8e-12 Score=107.12 Aligned_cols=89 Identities=21% Similarity=0.202 Sum_probs=63.6
Q ss_pred CCeEEEEecCCCcHHHHHHHHhhccCceeecCCCCceeEEEEEee--CCeEEEEECCCCCCCCChHHHHHHHHHHHhhhc
Q 029512 92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKL--GTKLCLVDLPGYGFAYAKEEVKDAWEELVSISY 169 (192)
Q Consensus 92 ~~~i~lvG~~n~GKStlin~L~~~~~~~~~~~~~g~T~~~~~~~~--~~~~~lvDtPG~~~~~~~~~~~~~~~~~~~l~~ 169 (192)
..+|+++|.+|||||||+|+|++.. ..+++.+|+|.+...... +..+.+|||||...-............+..
T Consensus 3 ~~kI~lvG~~nvGKSTL~n~L~g~~--~~v~~~pg~tv~~~~~~~~~~~~l~l~DtpG~~~~~~~~~~e~v~~~~~~--- 77 (272)
T 3b1v_A 3 MTEIALIGNPNSGKTSLFNLITGHN--QRVGNWPGVTVERKSGLVKKNKDLEIQDLPGIYSMSPYSPEAKVARDYLL--- 77 (272)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHCCC--CCCCSSSCCCCSCEEEECTTCTTEEEEECCCCSCSSCSSHHHHHHHHHHH---
T ss_pred ceEEEEECCCCCCHHHHHHHHHCCC--CcccCCCCCcEEEEEEEEecCCeEEEEECCCcCccCCCChHHHHHHHHHh---
Confidence 4589999999999999999999974 568888999987654433 578999999997652211111122223321
Q ss_pred cCceeEEEEEEecCCc
Q 029512 170 RNFWSCTCFLIYIFYT 185 (192)
Q Consensus 170 ~~~~~~v~~vvD~s~~ 185 (192)
...+|++++|+|++..
T Consensus 78 ~~~~d~vi~V~D~t~~ 93 (272)
T 3b1v_A 78 SQRADSILNVVDATNL 93 (272)
T ss_dssp TTCCSEEEEEEEGGGH
T ss_pred cCCCCEEEEEecCCch
Confidence 2468999999999764
No 22
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=99.37 E-value=6.2e-13 Score=116.47 Aligned_cols=90 Identities=20% Similarity=0.252 Sum_probs=50.5
Q ss_pred CCeEEEEecCCCcHHHHHHHHhhccCceeecCCCCceeEEEEEee---CCeEEEEECCCCCCCCChHHHHHHHHHHHhhh
Q 029512 92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKL---GTKLCLVDLPGYGFAYAKEEVKDAWEELVSIS 168 (192)
Q Consensus 92 ~~~i~lvG~~n~GKStlin~L~~~~~~~~~~~~~g~T~~~~~~~~---~~~~~lvDtPG~~~~~~~~~~~~~~~~~~~l~ 168 (192)
.++|+++|.+|||||||+|+|++. ..+.+++.+|+|++...... +..+.+|||||+...... +...+.... ..
T Consensus 3 ~~~V~ivG~~nvGKStL~n~l~~~-~~~~v~~~~g~T~d~~~~~~~~~~~~~~l~DT~G~~~~~~~--~~~~~~~~~-~~ 78 (436)
T 2hjg_A 3 KPVVAIVGRPNVGKSTIFNRIAGE-RISIVEDTPGVTRDRIYSSAEWLNYDFNLIDTGGIDIGDEP--FLAQIRQQA-EI 78 (436)
T ss_dssp CCEEEEECSTTSSHHHHHHHHEEE-ECC-----------CEEEECTTCSSCCEEEC---------C--HHHHHHHHH-HH
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC-CceeecCCCCCccceEEEEEEECCceEEEEECCCCCCcchh--HHHHHHHHH-HH
Confidence 368999999999999999999997 55778999999998766553 678999999998642211 111222111 12
Q ss_pred ccCceeEEEEEEecCCc
Q 029512 169 YRNFWSCTCFLIYIFYT 185 (192)
Q Consensus 169 ~~~~~~~v~~vvD~s~~ 185 (192)
..+.+|++++|+|++..
T Consensus 79 ~~~~ad~il~vvD~~~~ 95 (436)
T 2hjg_A 79 AMDEADVIIFMVNGREG 95 (436)
T ss_dssp HHHHCSEEEEEEETTTC
T ss_pred HHHhCCEEEEEEeCCCC
Confidence 33568999999999764
No 23
>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2
Probab=99.37 E-value=4.5e-13 Score=116.40 Aligned_cols=86 Identities=21% Similarity=0.132 Sum_probs=47.6
Q ss_pred CeEEEEecCCCcHHHHHHHHhhccCceeecCCCCceeEEEEEe------------------------e---CCeEEEEEC
Q 029512 93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFK------------------------L---GTKLCLVDL 145 (192)
Q Consensus 93 ~~i~lvG~~n~GKStlin~L~~~~~~~~~~~~~g~T~~~~~~~------------------------~---~~~~~lvDt 145 (192)
.+|+++|.+|||||||+|+|++.. +.+++.|++|+++.... . ..++.+|||
T Consensus 1 ~kI~ivG~pnvGKSTL~n~L~~~~--~~~~~~p~tT~~~~~g~~~~~~~~~~~~l~~~~~p~~~~~~~~~~~~~i~lvDt 78 (397)
T 1wxq_A 1 MEIGVVGKPNVGKSTFFSAATLVD--VEIANYPFTTIEANVGVTYAITDHPCKELGCSPNPQNYEYRNGLALIPVKMVDV 78 (397)
T ss_dssp CEEEEEECTTSSHHHHHHHHHC----------------CCEEEEEEEEECSCSSSCCSCCCSSSCEETTEEEEEEEEEEC
T ss_pred CEEEEECCCCCCHHHHHHHHHCCC--CcccCCCCcccCCceEEEeeccCCchHHhhhhcccccccccCCcceEEEEEEEC
Confidence 379999999999999999999984 77889999998765331 0 246999999
Q ss_pred CCCCCCCC-hHHHHHHHHHHHhhhccCceeEEEEEEecCCc
Q 029512 146 PGYGFAYA-KEEVKDAWEELVSISYRNFWSCTCFLIYIFYT 185 (192)
Q Consensus 146 PG~~~~~~-~~~~~~~~~~~~~l~~~~~~~~v~~vvD~s~~ 185 (192)
||+..... ...+. ..+ +...+.+|++++|+|++.+
T Consensus 79 pG~~~~a~~~~~l~---~~~--l~~i~~aD~il~VvD~~~~ 114 (397)
T 1wxq_A 79 AGLVPGAHEGRGLG---NKF--LDDLRMASALIHVVDATGK 114 (397)
T ss_dssp C------------------C--CCSSTTCSEEEEEEETTCC
T ss_pred CCcccchhhhhhHH---HHH--HHHHhcCCEEEEEEecccc
Confidence 99864211 11111 111 4667899999999999875
No 24
>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2
Probab=99.37 E-value=1.2e-13 Score=118.75 Aligned_cols=91 Identities=22% Similarity=0.253 Sum_probs=58.1
Q ss_pred CeEEEEecCCCcHHHHHHHHhhccCceeecCCCCceeEEEEE--ee-C-----------------CeEEEEECCCCCCCC
Q 029512 93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFF--KL-G-----------------TKLCLVDLPGYGFAY 152 (192)
Q Consensus 93 ~~i~lvG~~n~GKStlin~L~~~~~~~~~~~~~g~T~~~~~~--~~-~-----------------~~~~lvDtPG~~~~~ 152 (192)
.+|+++|.||||||||+|+|++.. ..+++.|++|.++... .. + ..+.+|||||+....
T Consensus 3 ~kI~IVG~pnvGKSTL~n~Lt~~~--~~v~~~p~tTi~p~~g~v~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~a 80 (363)
T 1jal_A 3 FKCGIVGLPNVGKSTLFNALTKAG--IEAANYPFCTIEPNTGVVPMPDPRLDALAEIVKPERILPTTMEFVDIAGLVAGA 80 (363)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHTC--------CCCCCCCCSSEEECCCHHHHHHHHHHCCSEEECCEEEEEECCSCCTTH
T ss_pred CEEEEECCCCCCHHHHHHHHHCCC--CcccCCCCceECceEEEEecCCcccceeeeeecccceeeeEEEEEECCCCcccc
Confidence 589999999999999999999974 6788889999876421 11 2 479999999987421
Q ss_pred C-hHHHHHHHHHHHhhhccCceeEEEEEEecCCceEEEE
Q 029512 153 A-KEEVKDAWEELVSISYRNFWSCTCFLIYIFYTNVIIL 190 (192)
Q Consensus 153 ~-~~~~~~~~~~~~~l~~~~~~~~v~~vvD~s~~~~~~~ 190 (192)
. ...+...+ +.+.+.+|++++|+|+++...+++
T Consensus 81 ~~~~gl~~~f-----l~~ir~ad~il~VvD~~~~~~v~~ 114 (363)
T 1jal_A 81 SKGEGLGNKF-----LANIRETDAIGHVVRCFENDDIVH 114 (363)
T ss_dssp HHHGGGTCCH-----HHHHHTCSEEEEEEECSCC-----
T ss_pred cccchHHHHH-----HHHHHhcCeEEEEEecCCCCceee
Confidence 1 01111111 334567899999999998655543
No 25
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=99.37 E-value=8.4e-13 Score=116.24 Aligned_cols=88 Identities=22% Similarity=0.309 Sum_probs=53.8
Q ss_pred CCCeEEEEecCCCcHHHHHHHHhhccCceeecCCCCceeEEEEEee---CCeEEEEECCCCCCCCC--hHHHHHHHHHHH
Q 029512 91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKL---GTKLCLVDLPGYGFAYA--KEEVKDAWEELV 165 (192)
Q Consensus 91 ~~~~i~lvG~~n~GKStlin~L~~~~~~~~~~~~~g~T~~~~~~~~---~~~~~lvDtPG~~~~~~--~~~~~~~~~~~~ 165 (192)
..++|+|+|.+|||||||+|+|++. ..+.+.+.+|+|++...... +..+.+|||||+..... .+.....+..
T Consensus 22 ~~~~V~lvG~~nvGKSTL~n~l~~~-~~~~v~~~~g~t~~~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~~~~~~~~-- 98 (456)
T 4dcu_A 22 GKPVVAIVGRPNVGKSTIFNRIAGE-RISIVEDTPGVTRDRIYSSAEWLNYDFNLIDTGGIDIGDEPFLAQIRQQAEI-- 98 (456)
T ss_dssp -CCEEEEECSSSSSHHHHHHHHEEE-EEC-----------CEEEECTTCSSCCEEECCCC------CCHHHHHHHHHH--
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCC-CCcccCCCCCcceeEEEEEEEECCceEEEEECCCCCCcchHHHHHHHHHHHh--
Confidence 4679999999999999999999998 56678899999998776553 67899999999874211 2222222222
Q ss_pred hhhccCceeEEEEEEecCC
Q 029512 166 SISYRNFWSCTCFLIYIFY 184 (192)
Q Consensus 166 ~l~~~~~~~~v~~vvD~s~ 184 (192)
..+.+|++++|+|++.
T Consensus 99 ---~~~~ad~il~VvD~~~ 114 (456)
T 4dcu_A 99 ---AMDEADVIIFMVNGRE 114 (456)
T ss_dssp ---HHHHCSEEEEEEESSS
T ss_pred ---hHhhCCEEEEEEeCCC
Confidence 2345799999999875
No 26
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=99.35 E-value=3.2e-12 Score=101.75 Aligned_cols=92 Identities=22% Similarity=0.220 Sum_probs=58.8
Q ss_pred CCCCeEEEEecCCCcHHHHHHHHhhccCceeecCCCCceeEEEEEe---eCCeEEEEECCCCCCCCChHHHHHHHHHHHh
Q 029512 90 PDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFK---LGTKLCLVDLPGYGFAYAKEEVKDAWEELVS 166 (192)
Q Consensus 90 ~~~~~i~lvG~~n~GKStlin~L~~~~~~~~~~~~~g~T~~~~~~~---~~~~~~lvDtPG~~~~~~~~~~~~~~~~~~~ 166 (192)
...++|+++|.+|||||||+|+|++.. . .+...+++|++..... .+..+.+|||||+......+.....+..+..
T Consensus 27 ~~~~kI~vvG~~~vGKSsLin~l~~~~-~-~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~ 104 (228)
T 2qu8_A 27 PHKKTIILSGAPNVGKSSFMNIVSRAN-V-DVQSYSFTTKNLYVGHFDHKLNKYQIIDTPGLLDRAFENRNTIEMTTITA 104 (228)
T ss_dssp TTSEEEEEECSTTSSHHHHHHHHTTTC-E-EEECC-----CEEEEEEEETTEEEEEEECTTTTTSCGGGCCHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCC-C-ccCCCCCcceeeeeeeeecCCCeEEEEECCCCcCcccchhhhHHHHHHHH
Confidence 456799999999999999999999973 3 3567778888765443 3578999999998653211110001111111
Q ss_pred hhccCceeEEEEEEecCCc
Q 029512 167 ISYRNFWSCTCFLIYIFYT 185 (192)
Q Consensus 167 l~~~~~~~~v~~vvD~s~~ 185 (192)
+ ....|++++|+|++++
T Consensus 105 ~--~~~~d~~i~v~d~~~~ 121 (228)
T 2qu8_A 105 L--AHINGVILFIIDISEQ 121 (228)
T ss_dssp H--HTSSEEEEEEEETTCT
T ss_pred h--hccccEEEEEEecccc
Confidence 1 2456899999999875
No 27
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=99.34 E-value=3.7e-13 Score=116.88 Aligned_cols=92 Identities=24% Similarity=0.218 Sum_probs=48.3
Q ss_pred CCCeEEEEecCCCcHHHHHHHHhhccCceeecCCCCceeEEEEEee--------------------CCeEEEEECCCCCC
Q 029512 91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKL--------------------GTKLCLVDLPGYGF 150 (192)
Q Consensus 91 ~~~~i~lvG~~n~GKStlin~L~~~~~~~~~~~~~g~T~~~~~~~~--------------------~~~~~lvDtPG~~~ 150 (192)
...+|+++|.||||||||+|+|++.. ..+++.|++|.+++.... ...+.+|||||+..
T Consensus 21 ~~~kvgIVG~pnvGKSTL~n~Ltg~~--~~~~~~p~tTi~p~~g~v~v~~~r~~~l~~~~~p~~~~~~~i~lvDtpGl~~ 98 (396)
T 2ohf_A 21 TSLKIGIVGLPNVGKSTFFNVLTNSQ--ASAENFPFCTIDPNESRVPVPDERFDFLCQYHKPASKIPAFLNVVDIAGLVK 98 (396)
T ss_dssp SCCCEEEECCSSSSHHHHHHHHHC---------------CCSEEEEECCCHHHHHHHHHHCCSEEECCEEEEEECCC---
T ss_pred CCCEEEEECCCCCCHHHHHHHHHCCC--ccccCCCccccCceeEEEEECCccceeeccccCcccccccccEEEECCCccc
Confidence 45689999999999999999999974 478889999987653321 23599999999875
Q ss_pred CCC-hHHHHHHHHHHHhhhccCceeEEEEEEecCCceEEE
Q 029512 151 AYA-KEEVKDAWEELVSISYRNFWSCTCFLIYIFYTNVII 189 (192)
Q Consensus 151 ~~~-~~~~~~~~~~~~~l~~~~~~~~v~~vvD~s~~~~~~ 189 (192)
... .+.+.+.| +...+.+|++++|+|+++.+.+.
T Consensus 99 ~as~~~glg~~~-----l~~ir~aD~Il~VvD~~~~~~i~ 133 (396)
T 2ohf_A 99 GAHNGQGLGNAF-----LSHISACDGIFHLTRAFEDDDIT 133 (396)
T ss_dssp --------CCHH-----HHHHHTSSSEEEEEEC-------
T ss_pred ccchhhHHHHHH-----HHHHHhcCeEEEEEecCCCcchh
Confidence 221 22222223 34456789999999998766553
No 28
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=99.34 E-value=3.7e-12 Score=103.44 Aligned_cols=92 Identities=14% Similarity=0.034 Sum_probs=61.0
Q ss_pred CCCeEEEEecCCCcHHHHHHHHhhccCceeecCCCC-ceeEEEE---EeeCCeEEEEECCCCCCCC-ChHHHHHHHHHHH
Q 029512 91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPG-LTQTINF---FKLGTKLCLVDLPGYGFAY-AKEEVKDAWEELV 165 (192)
Q Consensus 91 ~~~~i~lvG~~n~GKStlin~L~~~~~~~~~~~~~g-~T~~~~~---~~~~~~~~lvDtPG~~~~~-~~~~~~~~~~~~~ 165 (192)
...+|+|+|.+|||||||+|+|++.. ....+..+. +|++... ...+..+.||||||+.+.. ..+...+.+....
T Consensus 21 ~~~~I~lvG~~g~GKStl~n~l~~~~-~~~~~~~~~~~t~~~~~~~~~~~~~~i~iiDTpG~~~~~~~~~~~~~~i~~~~ 99 (260)
T 2xtp_A 21 SELRIILVGKTGTGKSAAGNSILRKQ-AFESKLGSQTLTKTCSKSQGSWGNREIVIIDTPDMFSWKDHCEALYKEVQRCY 99 (260)
T ss_dssp CCEEEEEEECTTSCHHHHHHHHHTSC-CSCCCTTSCCCCCSCEEEEEEETTEEEEEEECCGGGGSSCCCHHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHhCCC-CcccCCCCCceeeeeEEEEEEeCCCEEEEEECcCCCCCCCCHHHHHHHHHHHH
Confidence 45799999999999999999999873 233333343 5655432 2247789999999987632 2222222222111
Q ss_pred hhhccCceeEEEEEEecCC
Q 029512 166 SISYRNFWSCTCFLIYIFY 184 (192)
Q Consensus 166 ~l~~~~~~~~v~~vvD~s~ 184 (192)
....+.+|++++|+|++.
T Consensus 100 -~~~~~~~d~il~V~d~~~ 117 (260)
T 2xtp_A 100 -LLSAPGPHVLLLVTQLGR 117 (260)
T ss_dssp -HHHTTCCSEEEEEEETTC
T ss_pred -HhcCCCCcEEEEEEeCCC
Confidence 224567899999999874
No 29
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=99.33 E-value=4.8e-12 Score=94.08 Aligned_cols=87 Identities=22% Similarity=0.241 Sum_probs=54.3
Q ss_pred CeEEEEecCCCcHHHHHHHHhhccCceeecCCCCceeEEEEEe---eCCeEEEEECCCCCCCCC-hHHHHHHHHHHHhhh
Q 029512 93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFK---LGTKLCLVDLPGYGFAYA-KEEVKDAWEELVSIS 168 (192)
Q Consensus 93 ~~i~lvG~~n~GKStlin~L~~~~~~~~~~~~~g~T~~~~~~~---~~~~~~lvDtPG~~~~~~-~~~~~~~~~~~~~l~ 168 (192)
++|+++|.+|+|||||+|+|++. ....+...+++|.+..... .+..+.+|||||...... .......+. .
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~-----~ 75 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNRLLKK-RSAVVADVPGVTRDLKEGVVETDRGRFLLVDTGGLWSGDKWEKKIQEKVD-----R 75 (161)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHC-CC-----------CCEEEEEEETTEEEEEEECGGGCSSSSCCHHHHHHHH-----H
T ss_pred CEEEEECCCCCCHHHHHHHHhCC-CeeeccCCCCceecceEEEEEeCCceEEEEECCCCCCccchHHHHHHHHH-----H
Confidence 58999999999999999999987 4445666777776654332 367899999999865221 122222222 2
Q ss_pred ccCceeEEEEEEecCCc
Q 029512 169 YRNFWSCTCFLIYIFYT 185 (192)
Q Consensus 169 ~~~~~~~v~~vvD~s~~ 185 (192)
..+.+|++++++|++++
T Consensus 76 ~~~~~~~~i~v~d~~~~ 92 (161)
T 2dyk_A 76 ALEDAEVVLFAVDGRAE 92 (161)
T ss_dssp HTTTCSEEEEEEESSSC
T ss_pred HHHhCCEEEEEEECCCc
Confidence 34578999999999864
No 30
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=99.32 E-value=3.2e-13 Score=118.30 Aligned_cols=94 Identities=21% Similarity=0.216 Sum_probs=58.1
Q ss_pred CCCeEEEEecCCCcHHHHHHHHhhccCceeecCCCCceeEEE---EEeeCCeEEEEECCCCCCCCChHHHHHHHHHHHhh
Q 029512 91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTIN---FFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVSI 167 (192)
Q Consensus 91 ~~~~i~lvG~~n~GKStlin~L~~~~~~~~~~~~~g~T~~~~---~~~~~~~~~lvDtPG~~~~~~~~~~~~~~~~~~~l 167 (192)
..++|+++|.+|||||||+|+|++. ....+++.+|+|++.. +...+..+.||||||+..........+.+..+..+
T Consensus 174 ~~~ki~lvG~~nvGKSSLin~l~~~-~~~~~~~~~gtT~d~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~e~~~~~~~~ 252 (436)
T 2hjg_A 174 EVIQFCLIGRPNVGKSSLVNAMLGE-ERVIVSNVAGTTRDAVDTSFTYNQQEFVIVDTAGMRKKGKVYETTEKYSVLRAL 252 (436)
T ss_dssp TCEEEEEECSTTSSHHHHHHHHHTS-TTEEEC---------CCEEEEETTEEEEETTHHHHTCBTTBCCCCSHHHHHHHH
T ss_pred cCcEEEEEcCCCCCHHHHHHHHhCC-CceeecCCCCceeeeeEEEEEECCeEEEEEECCCcCcCccccchHHHHHHHHHH
Confidence 4579999999999999999999997 4567889999999863 33347789999999986522110000111111112
Q ss_pred hccCceeEEEEEEecCCc
Q 029512 168 SYRNFWSCTCFLIYIFYT 185 (192)
Q Consensus 168 ~~~~~~~~v~~vvD~s~~ 185 (192)
...+.+|++++|+|++.+
T Consensus 253 ~~~~~ad~~llv~D~~~~ 270 (436)
T 2hjg_A 253 KAIDRSEVVAVVLDGEEG 270 (436)
T ss_dssp HHHHHCSEEEEEEETTTC
T ss_pred HHHHhCCEEEEEEcCCcC
Confidence 334557999999999874
No 31
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Probab=99.32 E-value=7e-13 Score=114.20 Aligned_cols=90 Identities=22% Similarity=0.248 Sum_probs=62.6
Q ss_pred CeEEEEecCCCcHHHHHHHHhhccCceeecCCCCceeEEEEEe------------------------eCCeEEEEECCCC
Q 029512 93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFK------------------------LGTKLCLVDLPGY 148 (192)
Q Consensus 93 ~~i~lvG~~n~GKStlin~L~~~~~~~~~~~~~g~T~~~~~~~------------------------~~~~~~lvDtPG~ 148 (192)
.+|+++|.||+|||||+|+|++.. ..+++.+++|.+++... .+..+.++||||+
T Consensus 2 ~~v~IVG~pnvGKSTL~n~L~~~~--~~v~~~p~~Ti~pn~g~~~v~~~~l~~~~~~~~~~~~~~~~~~~~i~lvDtpGl 79 (368)
T 2dby_A 2 LAVGIVGLPNVGKSTLFNALTRAN--ALAANYPFATIDKNVGVVPLEDERLYALQRTFAKGERVPPVVPTHVEFVDIAGL 79 (368)
T ss_dssp CSEEEECCSSSSHHHHHHHHHHHH--TTCSSCCGGGGSTTEEEEECCCHHHHHHHHHHCBTTBCCCEECCEEEEEECCSC
T ss_pred cEEEEECCCCCCHHHHHHHHhCCC--CcccCCCCceeccceeeEecChHHHHHHHHHhcccccccccCCceEEEEECCCc
Confidence 579999999999999999999973 56678888887654322 2457999999998
Q ss_pred CCCC-ChHHHHHHHHHHHhhhccCceeEEEEEEecCCceEEE
Q 029512 149 GFAY-AKEEVKDAWEELVSISYRNFWSCTCFLIYIFYTNVII 189 (192)
Q Consensus 149 ~~~~-~~~~~~~~~~~~~~l~~~~~~~~v~~vvD~s~~~~~~ 189 (192)
.... ..+.+.+.+ +...+.+|++++|+|++....++
T Consensus 80 ~~~a~~~~~lg~~f-----l~~ir~ad~ii~VvD~~~~~~~~ 116 (368)
T 2dby_A 80 VKGAHKGEGLGNQF-----LAHIREVAAIAHVLRCFPDPDVV 116 (368)
T ss_dssp CCCCCSSSCTTHHH-----HHHHHTCSEEEEEEECCCCH---
T ss_pred cccccccchHHHHH-----HHHHHhCCEEEEEEECCCCCcee
Confidence 6522 122222222 23345789999999998765443
No 32
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=99.31 E-value=8.9e-12 Score=95.22 Aligned_cols=89 Identities=30% Similarity=0.487 Sum_probs=62.0
Q ss_pred CeEEEEecCCCcHHHHHHHHhhccCceeecCCCCceeEEEEEeeCCeEEEEECCCCCCCCC-hHHHHHHHHHHHh--hhc
Q 029512 93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYA-KEEVKDAWEELVS--ISY 169 (192)
Q Consensus 93 ~~i~lvG~~n~GKStlin~L~~~~~~~~~~~~~g~T~~~~~~~~~~~~~lvDtPG~~~~~~-~~~~~~~~~~~~~--l~~ 169 (192)
++|+++|.+|||||||+|+|++.. ..++..+++|.+....... .+.++||||+..... .......+..+.. +..
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~--~~~~~~~~~t~~~~~~~~~-~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (190)
T 2cxx_A 2 ATIIFAGRSNVGKSTLIYRLTGKK--VRRGKRPGVTRKIIEIEWK-NHKIIDMPGFGFMMGLPKEVQERIKDEIVHFIED 78 (190)
T ss_dssp CEEEEEEBTTSSHHHHHHHHHSCC--CSSSSSTTCTTSCEEEEET-TEEEEECCCBSCCTTSCHHHHHHHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHhCcC--CccCCCCCccceeEEEecC-CEEEEECCCccccccCCHHHHHHHHHHHHHHHHh
Confidence 589999999999999999999874 4556677888776655555 899999999765321 1111222222222 333
Q ss_pred -cCceeEEEEEEecCC
Q 029512 170 -RNFWSCTCFLIYIFY 184 (192)
Q Consensus 170 -~~~~~~v~~vvD~s~ 184 (192)
...+++++.++|.+.
T Consensus 79 ~~~~~~~v~~v~d~~s 94 (190)
T 2cxx_A 79 NAKNIDVAVLVVDGKA 94 (190)
T ss_dssp HGGGCCEEEEEEETTH
T ss_pred hhccCCEEEEEEcchh
Confidence 667789999999754
No 33
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=99.29 E-value=6.8e-12 Score=102.89 Aligned_cols=88 Identities=18% Similarity=0.162 Sum_probs=61.1
Q ss_pred CCeEEEEecCCCcHHHHHHHHhhccCceeecCCCCceeEEEEE---eeCCeEEEEECCCCCCCCC-hHHHHHHHHHHHhh
Q 029512 92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFF---KLGTKLCLVDLPGYGFAYA-KEEVKDAWEELVSI 167 (192)
Q Consensus 92 ~~~i~lvG~~n~GKStlin~L~~~~~~~~~~~~~g~T~~~~~~---~~~~~~~lvDtPG~~~~~~-~~~~~~~~~~~~~l 167 (192)
.++|+++|.+|+|||||+|+|++. ....+++.+++|.+.... ..+..+.+|||||+..... .....+.+..+
T Consensus 39 ~~~I~vvG~~g~GKSSLin~l~~~-~~~~~~~~~~~t~~~~~~~~~~~~~~l~iiDTpG~~~~~~~~~~~~~~i~~~--- 114 (270)
T 1h65_A 39 SLTILVMGKGGVGKSSTVNSIIGE-RVVSISPFQSEGPRPVMVSRSRAGFTLNIIDTPGLIEGGYINDMALNIIKSF--- 114 (270)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHTS-CCSCCCSSSCCCSSCEEEEEEETTEEEEEEECCCSEETTEECHHHHHHHHHH---
T ss_pred CeEEEEECCCCCCHHHHHHHHhCC-CcccccCCCCcceeeEEEEEeeCCeEEEEEECCCCCCCccchHHHHHHHHHH---
Confidence 469999999999999999999997 455667777777654332 2467899999999865322 22222222222
Q ss_pred hccCceeEEEEEEecC
Q 029512 168 SYRNFWSCTCFLIYIF 183 (192)
Q Consensus 168 ~~~~~~~~v~~vvD~s 183 (192)
.....+|++++|+|..
T Consensus 115 ~~~~~~d~il~v~~~d 130 (270)
T 1h65_A 115 LLDKTIDVLLYVDRLD 130 (270)
T ss_dssp TTTCEECEEEEEEESS
T ss_pred hhcCCCCEEEEEEeCC
Confidence 2245689999997764
No 34
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=99.28 E-value=6.1e-12 Score=108.20 Aligned_cols=88 Identities=25% Similarity=0.297 Sum_probs=60.5
Q ss_pred CeEEEEecCCCcHHHHHHHHhhcc-----CceeecCCCCceeEEEEEeeCCeEEEEECCCCCCCCC-hHHHHHHHHHHHh
Q 029512 93 PEIAFAGRSNVGKSSMLNALTRQW-----GVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYA-KEEVKDAWEELVS 166 (192)
Q Consensus 93 ~~i~lvG~~n~GKStlin~L~~~~-----~~~~~~~~~g~T~~~~~~~~~~~~~lvDtPG~~~~~~-~~~~~~~~~~~~~ 166 (192)
.+++++|.||+|||||+|+|++.. ....++..+|+|++...+..+..+.++||||+..+.. .+.+.. ..+..
T Consensus 161 ~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~~gtT~~~~~~~~~~~~~liDtPG~~~~~~~~~~l~~--~~l~~ 238 (368)
T 3h2y_A 161 KDVYVVGCTNVGKSTFINRMIKEFSDETENVITTSHFPGTTLDLIDIPLDEESSLYDTPGIINHHQMAHYVGK--QSLKL 238 (368)
T ss_dssp SCEEEEEBTTSSHHHHHHHHHHHHTTSCSSCCEEECCC----CEEEEESSSSCEEEECCCBCCTTSGGGGSCH--HHHHH
T ss_pred ceEEEecCCCCChhHHHHHHHhhhccccccceecCCCCCeecceEEEEecCCeEEEeCCCcCcHHHHHHHhhH--HHHHH
Confidence 589999999999999999999862 2456889999999998888777799999999986431 111111 11212
Q ss_pred hhccCceeEEEEEEec
Q 029512 167 ISYRNFWSCTCFLIYI 182 (192)
Q Consensus 167 l~~~~~~~~v~~vvD~ 182 (192)
+...+.++.+++++|+
T Consensus 239 ~~~~~~i~~~~~~l~~ 254 (368)
T 3h2y_A 239 ITPTKEIKPMVFQLNE 254 (368)
T ss_dssp HSCSSCCCCEEEEECT
T ss_pred hccccccCceEEEEcC
Confidence 3334567778888876
No 35
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=99.28 E-value=1.1e-11 Score=103.64 Aligned_cols=87 Identities=29% Similarity=0.201 Sum_probs=62.5
Q ss_pred CeEEEEecCCCcHHHHHHHHhhccCceeecCCCCceeEEEEE---eeCCeEEEEECCCCCCCCChHHHHHHHHHHHh--h
Q 029512 93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFF---KLGTKLCLVDLPGYGFAYAKEEVKDAWEELVS--I 167 (192)
Q Consensus 93 ~~i~lvG~~n~GKStlin~L~~~~~~~~~~~~~g~T~~~~~~---~~~~~~~lvDtPG~~~~~~~~~~~~~~~~~~~--l 167 (192)
..|+++|++|||||||+|+|++. ....+++.+++|++.... ..+..+.++||||+.. ......-..+.. .
T Consensus 9 ~~VaIvG~~nvGKSTLln~L~g~-~~~i~s~~~~tTr~~~~gi~~~~~~~i~~iDTpG~~~----~~~~~l~~~~~~~~~ 83 (301)
T 1ega_A 9 GFIAIVGRPNVGKSTLLNKLLGQ-KISITSRKAQTTRHRIVGIHTEGAYQAIYVDTPGLHM----EEKRAINRLMNKAAS 83 (301)
T ss_dssp EEEEEECSSSSSHHHHHHHHHTC-SEEECCCCSSCCSSCEEEEEEETTEEEEEESSSSCCH----HHHHHHHHHHTCCTT
T ss_pred CEEEEECCCCCCHHHHHHHHHCC-CccccCCCCCcceeeEEEEEEECCeeEEEEECcCCCc----cchhhHHHHHHHHHH
Confidence 48999999999999999999998 567778888888764322 2367899999999851 100111112222 3
Q ss_pred hccCceeEEEEEEecCC
Q 029512 168 SYRNFWSCTCFLIYIFY 184 (192)
Q Consensus 168 ~~~~~~~~v~~vvD~s~ 184 (192)
...+.+|++++|+|++.
T Consensus 84 ~~l~~~D~vl~Vvd~~~ 100 (301)
T 1ega_A 84 SSIGDVELVIFVVEGTR 100 (301)
T ss_dssp SCCCCEEEEEEEEETTC
T ss_pred HHHhcCCEEEEEEeCCC
Confidence 45678899999999864
No 36
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=99.28 E-value=2.3e-11 Score=93.04 Aligned_cols=88 Identities=28% Similarity=0.233 Sum_probs=60.1
Q ss_pred CCeEEEEecCCCcHHHHHHHHhhccCceeecCCCCceeEEEEEe---eCCeEEEEECCCCCCCCChHHHHHHHHHHHhhh
Q 029512 92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFK---LGTKLCLVDLPGYGFAYAKEEVKDAWEELVSIS 168 (192)
Q Consensus 92 ~~~i~lvG~~n~GKStlin~L~~~~~~~~~~~~~g~T~~~~~~~---~~~~~~lvDtPG~~~~~~~~~~~~~~~~~~~l~ 168 (192)
.++|+++|.+|||||||+|+|++.. ..++..+++|.+..... .+..+.+|||||.............+..+..
T Consensus 7 ~~~i~lvG~~gvGKStL~~~l~~~~--~~~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~-- 82 (188)
T 2wjg_A 7 SYEIALIGNPNVGKSTIFNALTGEN--VYIGNWPGVTVEKKEGEFEYNGEKFKVVDLPGVYSLTANSIDEIIARDYII-- 82 (188)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHTTC--EEEEECTTSCCEEEEEEEEETTEEEEEEECCCCSCCSSSSHHHHHHHHHHH--
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC--ccccCCCCeeccceEEEEEeCCcEEEEEECCCcCccccccHHHHHHHHHHh--
Confidence 4689999999999999999999863 55667788877654322 3678999999997653221111112222221
Q ss_pred ccCceeEEEEEEecCC
Q 029512 169 YRNFWSCTCFLIYIFY 184 (192)
Q Consensus 169 ~~~~~~~v~~vvD~s~ 184 (192)
...++++++++|++.
T Consensus 83 -~~~~~~~i~v~d~~~ 97 (188)
T 2wjg_A 83 -NEKPDLVVNIVDATA 97 (188)
T ss_dssp -HHCCSEEEEEEEGGG
T ss_pred -ccCCCEEEEEecchh
Confidence 134789999999864
No 37
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=99.27 E-value=4.1e-12 Score=109.29 Aligned_cols=90 Identities=23% Similarity=0.205 Sum_probs=65.6
Q ss_pred CCeEEEEecCCCcHHHHHHHHhhc----cCceeecCCCCceeEEEEEeeCCeEEEEECCCCCCCCC-hHHHHHHHHHHHh
Q 029512 92 LPEIAFAGRSNVGKSSMLNALTRQ----WGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYA-KEEVKDAWEELVS 166 (192)
Q Consensus 92 ~~~i~lvG~~n~GKStlin~L~~~----~~~~~~~~~~g~T~~~~~~~~~~~~~lvDtPG~~~~~~-~~~~~~~~~~~~~ 166 (192)
..+++++|.||+|||||+|+|++. .....++..+|+|++...+..+..+.++||||+..... .+.+.. ..+..
T Consensus 162 ~~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~gtT~~~~~~~~~~~~~liDtPG~~~~~~~~~~l~~--~~l~~ 239 (369)
T 3ec1_A 162 GGDVYVVGCTNVGKSTFINRIIEEATGKGNVITTSYFPGTTLDMIEIPLESGATLYDTPGIINHHQMAHFVDA--RDLKI 239 (369)
T ss_dssp TSCEEEECCTTSSHHHHHHHHHHHHHHTTCCCEEEECTTSSCEEEEEECSTTCEEEECCSCCCCSSGGGGSCT--TTHHH
T ss_pred cCcEEEEcCCCCchHHHHHHHHhhccCCccceeecCCCCeEEeeEEEEeCCCeEEEeCCCcCcHHHHHHHHhH--HHHHH
Confidence 358999999999999999999986 12467889999999998888888899999999986432 111111 01111
Q ss_pred hhccCceeEEEEEEecC
Q 029512 167 ISYRNFWSCTCFLIYIF 183 (192)
Q Consensus 167 l~~~~~~~~v~~vvD~s 183 (192)
+...+.++.+++++|+.
T Consensus 240 ~~~~~~i~~~~~~l~~~ 256 (369)
T 3ec1_A 240 ITPKREIHPRVYQLNEG 256 (369)
T ss_dssp HSCSSCCCCEEEEECTT
T ss_pred HhcccccCceEEEEcCC
Confidence 22336678888888873
No 38
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=99.27 E-value=1.4e-11 Score=93.15 Aligned_cols=88 Identities=30% Similarity=0.269 Sum_probs=54.2
Q ss_pred CeEEEEecCCCcHHHHHHHHhhccCceeecCCCCceeEEEE--E-eeCCeEEEEECCCCCCCCChHHHHHHHHHHHhhhc
Q 029512 93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINF--F-KLGTKLCLVDLPGYGFAYAKEEVKDAWEELVSISY 169 (192)
Q Consensus 93 ~~i~lvG~~n~GKStlin~L~~~~~~~~~~~~~g~T~~~~~--~-~~~~~~~lvDtPG~~~~~~~~~~~~~~~~~~~l~~ 169 (192)
.+|+++|++|||||||+|+|++.. ..++..+++|.+... . ..+..+.+|||||................+..
T Consensus 4 ~~v~lvG~~gvGKStL~~~l~~~~--~~~~~~~~~t~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~~--- 78 (165)
T 2wji_A 4 YEIALIGNPNVGKSTIFNALTGEN--VYIGNWPGVTVEKKEGEFEYNGEKFKVVDLPGVYSLTANSIDEIIARDYII--- 78 (165)
T ss_dssp EEEEEECSTTSSHHHHHHHHHCCS--SSCC-----CCCCCEEEEEETTEEEEEEECCCCSCSSSSSHHHHHHHHHHH---
T ss_pred cEEEEECCCCCCHHHHHHHHhCCC--eeccCCCCcceeeeEEEEEECCcEEEEEECCCcccCCCcchhHHHHHHHHh---
Confidence 589999999999999999999863 345566776655322 2 23678999999997642211111111112211
Q ss_pred cCceeEEEEEEecCCc
Q 029512 170 RNFWSCTCFLIYIFYT 185 (192)
Q Consensus 170 ~~~~~~v~~vvD~s~~ 185 (192)
...++++++++|++..
T Consensus 79 ~~~~~~~i~v~D~~~~ 94 (165)
T 2wji_A 79 NEKPDLVVNIVDATAL 94 (165)
T ss_dssp HHCCSEEEEEEETTCH
T ss_pred cCCCCEEEEEecCCch
Confidence 1357899999998764
No 39
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=99.27 E-value=1.3e-11 Score=100.77 Aligned_cols=89 Identities=19% Similarity=0.167 Sum_probs=60.7
Q ss_pred CCeEEEEecCCCcHHHHHHHHhhccCceeecCCCCceeEEEE---EeeCCeEEEEECCCCCCCC-ChHHHHHHHHHHHhh
Q 029512 92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINF---FKLGTKLCLVDLPGYGFAY-AKEEVKDAWEELVSI 167 (192)
Q Consensus 92 ~~~i~lvG~~n~GKStlin~L~~~~~~~~~~~~~g~T~~~~~---~~~~~~~~lvDtPG~~~~~-~~~~~~~~~~~~~~l 167 (192)
..+|+++|.+|+|||||+|+|++. ....++..+++|..... ...+..+.||||||+.+.. ..+...+.+..+ +
T Consensus 36 ~~~I~lvG~~g~GKSSLin~l~~~-~~~~~~~~~~~t~~~~~~~~~~~~~~l~liDTpG~~~~~~~~~~~~~~i~~~--l 112 (262)
T 3def_A 36 SMTVLVLGKGGVGKSSTVNSLIGE-QVVRVSPFQAEGLRPVMVSRTMGGFTINIIDTPGLVEAGYVNHQALELIKGF--L 112 (262)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHTS-CCSCCCSSCC-CCCCEEEEEEETTEEEEEEECCCSEETTEECHHHHHHHHHH--T
T ss_pred CcEEEEECCCCCCHHHHHHHHhCC-CCcccCCCCCcceeeEEEEEEECCeeEEEEECCCCCCcccchHHHHHHHHHH--H
Confidence 469999999999999999999997 44567777777765443 2347789999999986522 222222222222 2
Q ss_pred hccCceeEEEEEEecCC
Q 029512 168 SYRNFWSCTCFLIYIFY 184 (192)
Q Consensus 168 ~~~~~~~~v~~vvD~s~ 184 (192)
....++++++|+|...
T Consensus 113 -~~~~~~~il~V~~~d~ 128 (262)
T 3def_A 113 -VNRTIDVLLYVDRLDV 128 (262)
T ss_dssp -TTCEECEEEEEEESSC
T ss_pred -hcCCCCEEEEEEcCCC
Confidence 3457899999976543
No 40
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=99.26 E-value=5.3e-11 Score=98.92 Aligned_cols=27 Identities=37% Similarity=0.556 Sum_probs=24.6
Q ss_pred CCCCeEEEEecCCCcHHHHHHHHhhcc
Q 029512 90 PDLPEIAFAGRSNVGKSSMLNALTRQW 116 (192)
Q Consensus 90 ~~~~~i~lvG~~n~GKStlin~L~~~~ 116 (192)
...++|+++|.+|+|||||+|+|+|..
T Consensus 22 ~~~~~I~vvG~~~~GKSTlln~l~g~~ 48 (315)
T 1jwy_B 22 LDLPQIVVVGSQSSGKSSVLENIVGRD 48 (315)
T ss_dssp TCCCEEEEEECSSSSHHHHHHHHHTSC
T ss_pred CCCCeEEEEcCCCCCHHHHHHHHHCCC
Confidence 457899999999999999999999973
No 41
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=99.25 E-value=3.9e-11 Score=98.83 Aligned_cols=28 Identities=39% Similarity=0.554 Sum_probs=25.0
Q ss_pred CCCCCeEEEEecCCCcHHHHHHHHhhcc
Q 029512 89 APDLPEIAFAGRSNVGKSSMLNALTRQW 116 (192)
Q Consensus 89 ~~~~~~i~lvG~~n~GKStlin~L~~~~ 116 (192)
....++|+++|.+|||||||+|+|++..
T Consensus 23 ~~~~~~i~vvG~~~~GKSSLln~l~g~~ 50 (299)
T 2aka_B 23 DLDLPQIAVVGGQSAGKSSVLENFVGRD 50 (299)
T ss_dssp TCCCCEEEEEEBTTSCHHHHHHHHHTSC
T ss_pred CCCCCeEEEEeCCCCCHHHHHHHHHCCC
Confidence 3467899999999999999999999973
No 42
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=99.24 E-value=3.8e-12 Score=112.05 Aligned_cols=94 Identities=21% Similarity=0.229 Sum_probs=61.4
Q ss_pred CCCCeEEEEecCCCcHHHHHHHHhhccCceeecCCCCceeEE---EEEeeCCeEEEEECCCCCCCCChHHHHHHHHHHHh
Q 029512 90 PDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTI---NFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVS 166 (192)
Q Consensus 90 ~~~~~i~lvG~~n~GKStlin~L~~~~~~~~~~~~~g~T~~~---~~~~~~~~~~lvDtPG~~~~~~~~~~~~~~~~~~~ 166 (192)
...++|+++|.+|+|||||+|+|++. ....+++.+|+|++. .+...+..+.||||||+..........+.+..+..
T Consensus 193 ~~~~ki~ivG~~~vGKSslin~l~~~-~~~~~~~~~gtt~~~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~e~~~~~~~ 271 (456)
T 4dcu_A 193 EEVIQFCLIGRPNVGKSSLVNAMLGE-ERVIVSNVAGTTRDAVDTSFTYNQQEFVIVDTAGMRKKGKVYETTEKYSVLRA 271 (456)
T ss_dssp TTCEEEEEECSTTSSHHHHHHHHHTS-TTEEECC------CTTSEEEEETTEEEEETTGGGTTTBTTBCCCCSHHHHHHH
T ss_pred cccceeEEecCCCCCHHHHHHHHhCC-CccccCCCCCeEEEEEEEEEEECCceEEEEECCCCCcCcccchHHHHHHHHHH
Confidence 45679999999999999999999987 457788999999875 34445778999999998753211000011222222
Q ss_pred hhccCceeEEEEEEecCC
Q 029512 167 ISYRNFWSCTCFLIYIFY 184 (192)
Q Consensus 167 l~~~~~~~~v~~vvD~s~ 184 (192)
+...+.+|++++|+|++.
T Consensus 272 ~~~~~~ad~~llviD~~~ 289 (456)
T 4dcu_A 272 LKAIDRSEVVAVVLDGEE 289 (456)
T ss_dssp HHHHHHCSEEEEEEETTT
T ss_pred HHHHhhCCEEEEEEeCCC
Confidence 334456899999999976
No 43
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=99.23 E-value=2e-12 Score=112.16 Aligned_cols=89 Identities=19% Similarity=0.203 Sum_probs=65.3
Q ss_pred CCCeEEEEecCCCcHHHHHHHHhhccCceeecCCCCceeEEEEEe--e-C-----------------CeEEEEECCCCCC
Q 029512 91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFK--L-G-----------------TKLCLVDLPGYGF 150 (192)
Q Consensus 91 ~~~~i~lvG~~n~GKStlin~L~~~~~~~~~~~~~g~T~~~~~~~--~-~-----------------~~~~lvDtPG~~~ 150 (192)
....++|+|.+|||||||+|+|++. ..+.+++.|++|.++.... . + ..+.++|+||+..
T Consensus 19 ~g~~vgiVG~pnaGKSTL~n~Ltg~-~~a~~~~~p~tTi~p~~G~v~v~~~r~~~l~~~~~~~~~v~~~i~lvD~pGl~~ 97 (392)
T 1ni3_A 19 NNLKTGIVGMPNVGKSTFFRAITKS-VLGNPANYPYATIDPEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDIAGLTK 97 (392)
T ss_dssp SCCEEEEEECSSSSHHHHHHHHHHS-TTTSTTCCSSCCCCTTEEEEEECCHHHHHHHHHHCCSEEECEEEEEECTGGGCC
T ss_pred CCCEEEEECCCCCCHHHHHHHHHCC-CcccccCCCceeecceeeeeeeCCcchhhhhhhcccccccCcceEEEecccccc
Confidence 4579999999999999999999997 4458899999998765332 1 2 3589999999875
Q ss_pred CCC-hHHHHHHHHHHHhhhccCceeEEEEEEecCCc
Q 029512 151 AYA-KEEVKDAWEELVSISYRNFWSCTCFLIYIFYT 185 (192)
Q Consensus 151 ~~~-~~~~~~~~~~~~~l~~~~~~~~v~~vvD~s~~ 185 (192)
..+ .+.+.+.| +...+.+|.+++|+|++..
T Consensus 98 ~~s~~e~L~~~f-----l~~ir~~d~il~Vvd~~~d 128 (392)
T 1ni3_A 98 GASTGVGLGNAF-----LSHVRAVDAIYQVVRAFDD 128 (392)
T ss_dssp CCCSSSSSCHHH-----HHHHTTCSEEEEEEECCCT
T ss_pred CCcHHHHHHHHH-----HHHHHHHHHHHHHHhcccc
Confidence 322 23232233 2334568999999999763
No 44
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=99.22 E-value=3.6e-11 Score=92.23 Aligned_cols=83 Identities=18% Similarity=0.245 Sum_probs=59.2
Q ss_pred CCCeEEEEecCCCcHHHHHHHHhhccCceeecCCCCceeEEEEEeeCCeEEEEECCCCCCCCChHHHHHHHHHHHhhhcc
Q 029512 91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVSISYR 170 (192)
Q Consensus 91 ~~~~i~lvG~~n~GKStlin~L~~~~~~~~~~~~~g~T~~~~~~~~~~~~~lvDtPG~~~~~~~~~~~~~~~~~~~l~~~ 170 (192)
...+|+++|.+|||||||+|+|++. ......+..|.+.... ...+..+.+|||||... ....+..+ .
T Consensus 15 ~~~ki~ivG~~~vGKSsL~~~l~~~-~~~~~~~t~g~~~~~~-~~~~~~l~i~Dt~G~~~------~~~~~~~~-----~ 81 (181)
T 1fzq_A 15 QEVRILLLGLDNAGKTTLLKQLASE-DISHITPTQGFNIKSV-QSQGFKLNVWDIGGQRK------IRPYWRSY-----F 81 (181)
T ss_dssp SCEEEEEEESTTSSHHHHHHHHCCS-CCEEEEEETTEEEEEE-EETTEEEEEEECSSCGG------GHHHHHHH-----H
T ss_pred CceEEEEECCCCCCHHHHHHHHhcC-CCCcccCcCCeEEEEE-EECCEEEEEEECCCCHH------HHHHHHHH-----h
Confidence 4579999999999999999999987 4455556666554322 22378899999999532 12233333 2
Q ss_pred CceeEEEEEEecCCce
Q 029512 171 NFWSCTCFLIYIFYTN 186 (192)
Q Consensus 171 ~~~~~v~~vvD~s~~~ 186 (192)
+.+|++++|+|+++++
T Consensus 82 ~~~~~~i~v~d~~~~~ 97 (181)
T 1fzq_A 82 ENTDILIYVIDSADRK 97 (181)
T ss_dssp TTCSEEEEEEETTCGG
T ss_pred CCCCEEEEEEECcCHH
Confidence 4689999999998753
No 45
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.22 E-value=3.8e-11 Score=89.63 Aligned_cols=83 Identities=12% Similarity=0.029 Sum_probs=54.9
Q ss_pred CeEEEEecCCCcHHHHHHHHhhccCceeecCCCCceeEEEEEee---CCeEEEEECCCCCCCCChHHHHHHHHHHHhhhc
Q 029512 93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKL---GTKLCLVDLPGYGFAYAKEEVKDAWEELVSISY 169 (192)
Q Consensus 93 ~~i~lvG~~n~GKStlin~L~~~~~~~~~~~~~g~T~~~~~~~~---~~~~~lvDtPG~~~~~~~~~~~~~~~~~~~l~~ 169 (192)
.+|+++|.+|+|||||+|+|++........+..+.+........ ...+.+|||||.... ...+..+
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~------~~~~~~~----- 72 (170)
T 1ek0_A 4 IKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQERF------ASLAPXY----- 72 (170)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGG------GGGHHHH-----
T ss_pred EEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCChhh------hhhhhhh-----
Confidence 48999999999999999999987422223344454444443333 347999999995321 1122222
Q ss_pred cCceeEEEEEEecCCce
Q 029512 170 RNFWSCTCFLIYIFYTN 186 (192)
Q Consensus 170 ~~~~~~v~~vvD~s~~~ 186 (192)
.+.+|++++|+|++++.
T Consensus 73 ~~~~d~~i~v~d~~~~~ 89 (170)
T 1ek0_A 73 YRNAQAALVVYDVTKPQ 89 (170)
T ss_dssp HTTCSEEEEEEETTCHH
T ss_pred hccCcEEEEEEecCChH
Confidence 24679999999988753
No 46
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=99.21 E-value=3e-11 Score=90.32 Aligned_cols=83 Identities=11% Similarity=0.017 Sum_probs=46.7
Q ss_pred CCeEEEEecCCCcHHHHHHHHhhccCceeecCCCCceeEEEEEee--CCeEEEEECCCCCCCCChHHHHHHHHHHHhhhc
Q 029512 92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKL--GTKLCLVDLPGYGFAYAKEEVKDAWEELVSISY 169 (192)
Q Consensus 92 ~~~i~lvG~~n~GKStlin~L~~~~~~~~~~~~~g~T~~~~~~~~--~~~~~lvDtPG~~~~~~~~~~~~~~~~~~~l~~ 169 (192)
..+|+++|.+|||||||+|+|++. ........+++|........ ...+.+|||||.... ...+.. .
T Consensus 2 ~~ki~~vG~~~~GKSsli~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~------~~~~~~-----~ 69 (166)
T 3q72_A 2 VYKVLLLGAPGVGKSALARIFGGV-EDGPEAEAAGHTYDRSIVVDGEEASLMVYDIWEQDGG------RWLPGH-----C 69 (166)
T ss_dssp CCEEEEEESTTSSHHHHHHHHCCC-----------CEEEEEEEETTEEEEEEEEECC-----------------------
T ss_pred eEEEEEECCCCCCHHHHHHHHcCc-cccCCCCccccceEEEEEECCEEEEEEEEECCCCccc------hhhhhh-----h
Confidence 468999999999999999999987 44566677787776444332 456889999995421 111211 1
Q ss_pred cCceeEEEEEEecCCce
Q 029512 170 RNFWSCTCFLIYIFYTN 186 (192)
Q Consensus 170 ~~~~~~v~~vvD~s~~~ 186 (192)
.+.++++++|+|.++++
T Consensus 70 ~~~~~~~i~v~d~~~~~ 86 (166)
T 3q72_A 70 MAMGDAYVIVYSVTDKG 86 (166)
T ss_dssp ---CCEEEEEEETTCHH
T ss_pred hhhCCEEEEEEECCCHH
Confidence 24568888888887653
No 47
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=99.21 E-value=3.4e-11 Score=90.03 Aligned_cols=84 Identities=14% Similarity=0.063 Sum_probs=56.9
Q ss_pred CCeEEEEecCCCcHHHHHHHHhhccCceeecCCCCceeEEEEEee---CCeEEEEECCCCCCCCChHHHHHHHHHHHhhh
Q 029512 92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKL---GTKLCLVDLPGYGFAYAKEEVKDAWEELVSIS 168 (192)
Q Consensus 92 ~~~i~lvG~~n~GKStlin~L~~~~~~~~~~~~~g~T~~~~~~~~---~~~~~lvDtPG~~~~~~~~~~~~~~~~~~~l~ 168 (192)
..+|+++|.+|+|||||+|+|++........+..|.+........ ...+.+|||||.... ...+..
T Consensus 6 ~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~------~~~~~~----- 74 (170)
T 1z0j_A 6 ELKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGLERF------RALAPM----- 74 (170)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGG------GGGTHH-----
T ss_pred ceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEECCeEEEEEEEcCCCchhh------hcccHh-----
Confidence 358999999999999999999987422334455666655444333 367899999997321 111111
Q ss_pred ccCceeEEEEEEecCCce
Q 029512 169 YRNFWSCTCFLIYIFYTN 186 (192)
Q Consensus 169 ~~~~~~~v~~vvD~s~~~ 186 (192)
..+.+|++++|+|++++.
T Consensus 75 ~~~~~~~~i~v~d~~~~~ 92 (170)
T 1z0j_A 75 YYRGSAAAIIVYDITKEE 92 (170)
T ss_dssp HHTTCSEEEEEEETTCHH
T ss_pred hCcCCCEEEEEEECcCHH
Confidence 124578899999987653
No 48
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=99.21 E-value=6e-12 Score=103.52 Aligned_cols=59 Identities=27% Similarity=0.544 Sum_probs=43.8
Q ss_pred CeEEEEecCCCcHHHHHHHHhhccCceeecCCCCceeEEEEEeeCCeEEEEECCCCCCCC
Q 029512 93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAY 152 (192)
Q Consensus 93 ~~i~lvG~~n~GKStlin~L~~~~~~~~~~~~~g~T~~~~~~~~~~~~~lvDtPG~~~~~ 152 (192)
.+++++|.+|+|||||+|+|++. ....+++.+|+|+..+....+..+.++||||+..+.
T Consensus 100 ~~v~~vG~~~vGKSslin~l~~~-~~~~~~~~~g~T~~~~~~~~~~~~~l~DtpG~~~~~ 158 (262)
T 3cnl_A 100 ARVLIVGVPNTGKSTIINKLKGK-RASSVGAQPGITKGIQWFSLENGVKILDTPGILYKN 158 (262)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTT-CC----------CCSCEEECTTSCEEESSCEECCCC
T ss_pred hheEEeCCCCCCHHHHHHHHhcc-cccccCCCCCCccceEEEEeCCCEEEEECCCcccCc
Confidence 69999999999999999999997 456788899999988877778899999999998754
No 49
>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8
Probab=99.21 E-value=3.6e-12 Score=108.71 Aligned_cols=86 Identities=20% Similarity=0.192 Sum_probs=61.8
Q ss_pred CCeEEEEecCCCcHHHHHHHHhhccCceeecCCCCceeEEEEEe--e--CCeEEEEECCCCCC-CCChHHHHHHHHHHHh
Q 029512 92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFK--L--GTKLCLVDLPGYGF-AYAKEEVKDAWEELVS 166 (192)
Q Consensus 92 ~~~i~lvG~~n~GKStlin~L~~~~~~~~~~~~~g~T~~~~~~~--~--~~~~~lvDtPG~~~-~~~~~~~~~~~~~~~~ 166 (192)
.+.|+|+|.+|||||||+|+|++.. ..+++.+++|.++.... . +..+.++||||+.. ......+... +
T Consensus 158 la~V~lvG~~nvGKSTLln~L~~~~--~~i~~~~ftTl~p~~g~v~~~~~~~~~l~DtPG~i~~a~~~~~l~~~---f-- 230 (342)
T 1lnz_A 158 LADVGLVGFPSVGKSTLLSVVSSAK--PKIADYHFTTLVPNLGMVETDDGRSFVMADLPGLIEGAHQGVGLGHQ---F-- 230 (342)
T ss_dssp CCCEEEESSTTSSHHHHHHHSEEEC--CEESSTTSSCCCCCEEEEECSSSCEEEEEEHHHHHHHTTCTTTTHHH---H--
T ss_pred cCeeeeeCCCCCCHHHHHHHHHcCC--CccccCCccccCceEEEEEeCCCceEEEecCCCCcccccccchhHHH---H--
Confidence 3579999999999999999999874 45678888888765332 2 37899999999753 1111112122 2
Q ss_pred hhccCceeEEEEEEecCC
Q 029512 167 ISYRNFWSCTCFLIYIFY 184 (192)
Q Consensus 167 l~~~~~~~~v~~vvD~s~ 184 (192)
+.+...++++++|+|++.
T Consensus 231 l~~i~~~d~ll~VvD~s~ 248 (342)
T 1lnz_A 231 LRHIERTRVIVHVIDMSG 248 (342)
T ss_dssp HHHHHHCCEEEEEEESSC
T ss_pred HHHHHhccEEEEEEECCc
Confidence 344456899999999976
No 50
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=99.21 E-value=2.7e-11 Score=99.54 Aligned_cols=60 Identities=27% Similarity=0.319 Sum_probs=38.1
Q ss_pred CCCeEEEEecCCCcHHHHHHHHhhccCceeecC-------CCCceeEEEEEee---C--CeEEEEECCCCCCC
Q 029512 91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSD-------KPGLTQTINFFKL---G--TKLCLVDLPGYGFA 151 (192)
Q Consensus 91 ~~~~i~lvG~~n~GKStlin~L~~~~~~~~~~~-------~~g~T~~~~~~~~---~--~~~~lvDtPG~~~~ 151 (192)
...+|+++|.+|+|||||+|+|++.. ...... .+.++.+...... + ..+.+|||||+++.
T Consensus 7 ~~~~I~vvG~~g~GKSTLin~L~~~~-~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~liDTpG~~d~ 78 (274)
T 3t5d_A 7 FEFTLMVVGESGLGKSTLINSLFLTD-LYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDA 78 (274)
T ss_dssp CEEEEEEEECTTSSHHHHHHHHSSSC-C---------------CCCEEEEEEECC--CCEEEEEEECCCCSCC
T ss_pred cEEEEEEECCCCCCHHHHHHHHhCCC-ccccCCCCcccccCCceEEEEEEEEEecCCeEEEEEEEECCCcccc
Confidence 34689999999999999999999874 222221 2223333322221 2 38999999999764
No 51
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=99.20 E-value=5.3e-12 Score=110.58 Aligned_cols=93 Identities=24% Similarity=0.282 Sum_probs=56.5
Q ss_pred CCCeEEEEecCCCcHHHHHHHHhhccCceeecCCCCceeEEE---EEeeCCeEEEEECCCCCCCCChH-HHHHHHHHHHh
Q 029512 91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTIN---FFKLGTKLCLVDLPGYGFAYAKE-EVKDAWEELVS 166 (192)
Q Consensus 91 ~~~~i~lvG~~n~GKStlin~L~~~~~~~~~~~~~g~T~~~~---~~~~~~~~~lvDtPG~~~~~~~~-~~~~~~~~~~~ 166 (192)
..++|+++|++|||||||+|+|++. ....+++.+|+|++.. ....+..+.+|||||+....... .....+..+..
T Consensus 179 ~~~kvaivG~~gvGKSTLln~l~g~-~~~~v~~~~gtT~d~~~~~i~~~g~~~~l~Dt~G~~~~~~~~~~~~e~~~~~~~ 257 (439)
T 1mky_A 179 DAIKVAIVGRPNVGKSTLFNAILNK-ERALVSPIPGTTRDPVDDEVFIDGRKYVFVDTAGLRRKSRVEPRTVEKYSNYRV 257 (439)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHTS-TTEEECCCC------CCEEEEETTEEEEESSCSCC-----------CCSCCHHH
T ss_pred cCceEEEECCCCCCHHHHHHHHhCC-cccccCCCCCCcCCceEEEEEECCEEEEEEECCCCccccccchhhHHHHHHHHH
Confidence 4579999999999999999999997 4577899999998864 33347789999999985321110 00000000000
Q ss_pred hhccCceeEEEEEEecCC
Q 029512 167 ISYRNFWSCTCFLIYIFY 184 (192)
Q Consensus 167 l~~~~~~~~v~~vvD~s~ 184 (192)
+...+.+|.+++++|++.
T Consensus 258 ~~~i~~ad~vllv~d~~~ 275 (439)
T 1mky_A 258 VDSIEKADVVVIVLDATQ 275 (439)
T ss_dssp HHHHHHCSEEEEEEETTT
T ss_pred HHHHhhCCEEEEEEeCCC
Confidence 223345789999999875
No 52
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=99.20 E-value=9.1e-11 Score=100.09 Aligned_cols=90 Identities=23% Similarity=0.273 Sum_probs=63.5
Q ss_pred CCCCeEEEEecCCCcHHHHHHHHhhccCceeecCCCCceeEEEEEe---eCCeEEEEECCCCCCCCCh--HHHHHHHHHH
Q 029512 90 PDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFK---LGTKLCLVDLPGYGFAYAK--EEVKDAWEEL 164 (192)
Q Consensus 90 ~~~~~i~lvG~~n~GKStlin~L~~~~~~~~~~~~~g~T~~~~~~~---~~~~~~lvDtPG~~~~~~~--~~~~~~~~~~ 164 (192)
...++|+++|++|||||||+|+|++.. ..++..+++|++..... .+..+.++||||+...... .... ...+
T Consensus 165 ~~~~~v~lvG~~gvGKSTLin~L~~~~--~~~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~--~~~~ 240 (357)
T 2e87_A 165 LEIPTVVIAGHPNVGKSTLLKALTTAK--PEIASYPFTTRGINVGQFEDGYFRYQIIDTPGLLDRPISERNEIE--KQAI 240 (357)
T ss_dssp SSSCEEEEECSTTSSHHHHHHHHCSSC--CEEECCTTCSSCEEEEEEEETTEEEEEEECTTTSSSCSTTSCHHH--HHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCC--CccCCCCCeeeceeEEEEEecCceEEEEeCCCccccchhhhhHHH--HHHH
Confidence 456799999999999999999999974 55677788888766444 2567999999998653221 1111 1111
Q ss_pred HhhhccCceeEEEEEEecCCc
Q 029512 165 VSISYRNFWSCTCFLIYIFYT 185 (192)
Q Consensus 165 ~~l~~~~~~~~v~~vvD~s~~ 185 (192)
. .....+|.+++|+|++.+
T Consensus 241 ~--~~~~~ad~illV~D~s~~ 259 (357)
T 2e87_A 241 L--ALRYLGNLIIYIFDPSEH 259 (357)
T ss_dssp H--GGGGTCSEEEEEECTTCT
T ss_pred H--HHHhcCCEEEEEEeCCcc
Confidence 1 123457999999998765
No 53
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=99.20 E-value=6.2e-11 Score=88.87 Aligned_cols=83 Identities=19% Similarity=0.197 Sum_probs=55.6
Q ss_pred CCCeEEEEecCCCcHHHHHHHHhhccCceeecCCCCceeEEEEEeeCCeEEEEECCCCCCCCChHHHHHHHHHHHhhhcc
Q 029512 91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVSISYR 170 (192)
Q Consensus 91 ~~~~i~lvG~~n~GKStlin~L~~~~~~~~~~~~~g~T~~~~~~~~~~~~~lvDtPG~~~~~~~~~~~~~~~~~~~l~~~ 170 (192)
...+|+++|.+|+|||||+|+|++.. .....+..+.+.. .....+..+.+|||||.... ...+ ....
T Consensus 6 ~~~~i~v~G~~~~GKssl~~~l~~~~-~~~~~~t~~~~~~-~~~~~~~~~~~~Dt~G~~~~------~~~~-----~~~~ 72 (171)
T 1upt_A 6 REMRILILGLDGAGKTTILYRLQVGE-VVTTIPTIGFNVE-TVTYKNLKFQVWDLGGLTSI------RPYW-----RCYY 72 (171)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHHSS-CCCCCCCSSEEEE-EEEETTEEEEEEEECCCGGG------GGGG-----GGGC
T ss_pred CccEEEEECCCCCCHHHHHHHHhcCC-CCCcCCcCccceE-EEEECCEEEEEEECCCChhh------hHHH-----HHHh
Confidence 35699999999999999999999873 3333333343322 22223788999999996421 0111 1234
Q ss_pred CceeEEEEEEecCCce
Q 029512 171 NFWSCTCFLIYIFYTN 186 (192)
Q Consensus 171 ~~~~~v~~vvD~s~~~ 186 (192)
+.+|++++|+|+++++
T Consensus 73 ~~~d~ii~v~d~~~~~ 88 (171)
T 1upt_A 73 SNTDAVIYVVDSCDRD 88 (171)
T ss_dssp TTCSEEEEEEETTCCT
T ss_pred ccCCEEEEEEECCCHH
Confidence 5789999999998763
No 54
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=99.20 E-value=6.5e-11 Score=89.22 Aligned_cols=83 Identities=16% Similarity=0.121 Sum_probs=55.2
Q ss_pred CCeEEEEecCCCcHHHHHHHHhhccCceeecCCCCceeEEEEEee---CCeEEEEECCCCCCCCChHHHHHHHHHHHhhh
Q 029512 92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKL---GTKLCLVDLPGYGFAYAKEEVKDAWEELVSIS 168 (192)
Q Consensus 92 ~~~i~lvG~~n~GKStlin~L~~~~~~~~~~~~~g~T~~~~~~~~---~~~~~lvDtPG~~~~~~~~~~~~~~~~~~~l~ 168 (192)
..+|+++|.+|+|||||+|+|++...........+.+........ ...+.+|||||... ....+..+.
T Consensus 15 ~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~------~~~~~~~~~--- 85 (179)
T 1z0f_A 15 IFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQER------FRAVTRSYY--- 85 (179)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCCCSSCTTSCCCCEEEEEEEETTEEEEEEEEECTTGGG------TCHHHHHHH---
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCeEEEEEEEECCCChH------hhhhHHHHh---
Confidence 469999999999999999999987422222333444444443333 34789999999432 112232222
Q ss_pred ccCceeEEEEEEecCCc
Q 029512 169 YRNFWSCTCFLIYIFYT 185 (192)
Q Consensus 169 ~~~~~~~v~~vvD~s~~ 185 (192)
+.+|++++|+|++++
T Consensus 86 --~~~d~~i~v~d~~~~ 100 (179)
T 1z0f_A 86 --RGAAGALMVYDITRR 100 (179)
T ss_dssp --HTCSEEEEEEETTCH
T ss_pred --ccCCEEEEEEeCcCH
Confidence 357999999998765
No 55
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=99.19 E-value=7.2e-11 Score=90.22 Aligned_cols=82 Identities=18% Similarity=0.223 Sum_probs=58.6
Q ss_pred CCCeEEEEecCCCcHHHHHHHHhhccCceeecCCCCceeEEEEEeeCCeEEEEECCCCCCCCChHHHHHHHHHHHhhhcc
Q 029512 91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVSISYR 170 (192)
Q Consensus 91 ~~~~i~lvG~~n~GKStlin~L~~~~~~~~~~~~~g~T~~~~~~~~~~~~~lvDtPG~~~~~~~~~~~~~~~~~~~l~~~ 170 (192)
...+|+++|.+|+|||||+|+|++. .........|.+... ....+..+.+|||||...... .+ ....
T Consensus 20 ~~~~i~v~G~~~~GKSsli~~l~~~-~~~~~~~t~~~~~~~-~~~~~~~~~i~Dt~G~~~~~~------~~-----~~~~ 86 (181)
T 2h17_A 20 QEHKVIIVGLDNAGKTTILYQFSMN-EVVHTSPTIGSNVEE-IVINNTRFLMWDIGGQESLRS------SW-----NTYY 86 (181)
T ss_dssp -CEEEEEEEETTSSHHHHHHHHHTT-SCEEEECCSSSSCEE-EEETTEEEEEEEESSSGGGTC------GG-----GGGG
T ss_pred ceeEEEEECCCCCCHHHHHHHHhcC-CCCccCCcCceeeEE-EEECCEEEEEEECCCCHhHHH------HH-----HHHh
Confidence 4569999999999999999999987 445566666655432 223578899999999632110 11 1234
Q ss_pred CceeEEEEEEecCCc
Q 029512 171 NFWSCTCFLIYIFYT 185 (192)
Q Consensus 171 ~~~~~v~~vvD~s~~ 185 (192)
+.+|++++|+|++++
T Consensus 87 ~~~d~ii~v~D~~~~ 101 (181)
T 2h17_A 87 TNTEFVIVVVDSTDR 101 (181)
T ss_dssp TTCCEEEEEEETTCT
T ss_pred ccCCEEEEEEECCCH
Confidence 578999999998875
No 56
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=99.18 E-value=5.9e-11 Score=91.40 Aligned_cols=84 Identities=15% Similarity=0.226 Sum_probs=56.6
Q ss_pred CCCCeEEEEecCCCcHHHHHHHHhhccCceee--cCCCCceeEEEEEeeCCeEEEEECCCCCCCCChHHHHHHHHHHHhh
Q 029512 90 PDLPEIAFAGRSNVGKSSMLNALTRQWGVVRT--SDKPGLTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVSI 167 (192)
Q Consensus 90 ~~~~~i~lvG~~n~GKStlin~L~~~~~~~~~--~~~~g~T~~~~~~~~~~~~~lvDtPG~~~~~~~~~~~~~~~~~~~l 167 (192)
...++|+++|.+|||||||+|+|++.. ...+ .+..+.+.. .....+..+.+|||||.... ...+ -
T Consensus 15 ~~~~ki~v~G~~~~GKSsl~~~l~~~~-~~~~~~~~t~~~~~~-~~~~~~~~~~i~Dt~G~~~~------~~~~-----~ 81 (199)
T 4bas_A 15 KTKLQVVMCGLDNSGKTTIINQVKPAQ-SSSKHITATVGYNVE-TFEKGRVAFTVFDMGGAKKF------RGLW-----E 81 (199)
T ss_dssp -CEEEEEEECCTTSCHHHHHHHHSCCC-----CCCCCSSEEEE-EEEETTEEEEEEEECCSGGG------GGGG-----G
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhcCC-CcccccccccceeEE-EEEeCCEEEEEEECCCCHhH------HHHH-----H
Confidence 355699999999999999999999873 3333 444454333 22334778999999996321 1111 1
Q ss_pred hccCceeEEEEEEecCCce
Q 029512 168 SYRNFWSCTCFLIYIFYTN 186 (192)
Q Consensus 168 ~~~~~~~~v~~vvD~s~~~ 186 (192)
...+.+|++++|+|+++++
T Consensus 82 ~~~~~~d~ii~v~D~~~~~ 100 (199)
T 4bas_A 82 TYYDNIDAVIFVVDSSDHL 100 (199)
T ss_dssp GGCTTCSEEEEEEETTCGG
T ss_pred HHHhcCCEEEEEEECCcHH
Confidence 2346789999999998764
No 57
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=99.18 E-value=1.2e-10 Score=89.46 Aligned_cols=84 Identities=18% Similarity=0.148 Sum_probs=54.2
Q ss_pred CCCeEEEEecCCCcHHHHHHHHhhccCceeecCCCCceeEEEEEee---CCeEEEEECCCCCCCCChHHHH-HHHHHHHh
Q 029512 91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKL---GTKLCLVDLPGYGFAYAKEEVK-DAWEELVS 166 (192)
Q Consensus 91 ~~~~i~lvG~~n~GKStlin~L~~~~~~~~~~~~~g~T~~~~~~~~---~~~~~lvDtPG~~~~~~~~~~~-~~~~~~~~ 166 (192)
...+|+++|.+|+|||||+|+|++...........+.+........ ...+.+|||||.. ... ..+..+
T Consensus 19 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~------~~~~~~~~~~-- 90 (189)
T 1z06_A 19 RIFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQE------RFRKSMVQHY-- 90 (189)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHSSCCSSCCCCCSCCEEEEEEEETTEEEEEEEEECCCSH------HHHTTTHHHH--
T ss_pred ceEEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCcceEEEEEEEEECCEEEEEEEEECCCch------hhhhhhhHHH--
Confidence 3469999999999999999999986321222233333333333332 2479999999942 111 222222
Q ss_pred hhccCceeEEEEEEecCCc
Q 029512 167 ISYRNFWSCTCFLIYIFYT 185 (192)
Q Consensus 167 l~~~~~~~~v~~vvD~s~~ 185 (192)
.+.+|++++|+|++.+
T Consensus 91 ---~~~~d~iilv~D~~~~ 106 (189)
T 1z06_A 91 ---YRNVHAVVFVYDMTNM 106 (189)
T ss_dssp ---HTTCCEEEEEEETTCH
T ss_pred ---hcCCCEEEEEEECcCH
Confidence 3468999999998764
No 58
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=99.17 E-value=8.3e-11 Score=89.36 Aligned_cols=84 Identities=21% Similarity=0.017 Sum_probs=52.6
Q ss_pred CCCeEEEEecCCCcHHHHHHHHhhccCceeecCCCCceeEEEEEeeC--CeEEEEECCCCCCCCChHHHHHHHHHHHhhh
Q 029512 91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLG--TKLCLVDLPGYGFAYAKEEVKDAWEELVSIS 168 (192)
Q Consensus 91 ~~~~i~lvG~~n~GKStlin~L~~~~~~~~~~~~~g~T~~~~~~~~~--~~~~lvDtPG~~~~~~~~~~~~~~~~~~~l~ 168 (192)
..++|+++|.+|+|||||+|+|++........+..+.+........+ ..+.+|||||...... .+ ..
T Consensus 5 ~~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~------~~-----~~ 73 (181)
T 3t5g_A 5 KSRKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTFTKLITVNGQEYHLQLVDTAGQDEYSI------FP-----QT 73 (181)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHSSCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCCCCTTCC------CC-----GG
T ss_pred ceEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCCccccEEEEEEECCEEEEEEEEeCCCchhhhH------HH-----HH
Confidence 34699999999999999999999763222233333333322222223 4678999999653111 00 12
Q ss_pred ccCceeEEEEEEecCCc
Q 029512 169 YRNFWSCTCFLIYIFYT 185 (192)
Q Consensus 169 ~~~~~~~v~~vvD~s~~ 185 (192)
..+.+|++++|+|.+++
T Consensus 74 ~~~~~~~~i~v~d~~~~ 90 (181)
T 3t5g_A 74 YSIDINGYILVYSVTSI 90 (181)
T ss_dssp GTTTCSEEEEEEETTCH
T ss_pred HHhcCCEEEEEEECCCH
Confidence 23457888888888764
No 59
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=99.17 E-value=7.7e-11 Score=88.64 Aligned_cols=85 Identities=18% Similarity=0.047 Sum_probs=52.5
Q ss_pred CCeEEEEecCCCcHHHHHHHHhhccCceeecCCCCceeEEEEEee-C--CeEEEEECCCCCCCCChHHHHHHHHHHHhhh
Q 029512 92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKL-G--TKLCLVDLPGYGFAYAKEEVKDAWEELVSIS 168 (192)
Q Consensus 92 ~~~i~lvG~~n~GKStlin~L~~~~~~~~~~~~~g~T~~~~~~~~-~--~~~~lvDtPG~~~~~~~~~~~~~~~~~~~l~ 168 (192)
.++|+++|.+|||||||+|+|++. ........+|+|........ + ..+.+|||||..... ...+. -.
T Consensus 4 ~~ki~i~G~~~vGKSsl~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~--------~~~~~-~~ 73 (175)
T 2nzj_A 4 LYRVVLLGDPGVGKTSLASLFAGK-QERDLHEQLGEDVYERTLTVDGEDTTLVVVDTWEAEKLD--------KSWSQ-ES 73 (175)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHCC------CCCSSSSEEEEEEEETTEEEEEEEECCC---------------CHHH-HH
T ss_pred EEEEEEECCCCccHHHHHHHHhcC-CCccccCccccceeEEEEEECCEEEEEEEEecCCCCccc--------hhhhH-Hh
Confidence 468999999999999999999987 44555566777655444333 2 368899999964310 00010 11
Q ss_pred ccCceeEEEEEEecCCce
Q 029512 169 YRNFWSCTCFLIYIFYTN 186 (192)
Q Consensus 169 ~~~~~~~v~~vvD~s~~~ 186 (192)
..+.++++++|+|.++++
T Consensus 74 ~~~~~~~~i~v~d~~~~~ 91 (175)
T 2nzj_A 74 CLQGGSAYVIVYSIADRG 91 (175)
T ss_dssp TTTSCSEEEEEEETTCHH
T ss_pred hcccCCEEEEEEECCCHH
Confidence 234678999999987653
No 60
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.17 E-value=9.6e-11 Score=89.02 Aligned_cols=82 Identities=22% Similarity=0.199 Sum_probs=55.4
Q ss_pred CCCeEEEEecCCCcHHHHHHHHhhccCceeecCCCCceeEEEEEeeCCeEEEEECCCCCCCCChHHHHHHHHHHHhhhcc
Q 029512 91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVSISYR 170 (192)
Q Consensus 91 ~~~~i~lvG~~n~GKStlin~L~~~~~~~~~~~~~g~T~~~~~~~~~~~~~lvDtPG~~~~~~~~~~~~~~~~~~~l~~~ 170 (192)
...+|+++|.+|||||||+|+|++. ......+..+.+... ....+..+.+|||||...... .+ ....
T Consensus 17 ~~~~i~v~G~~~~GKssli~~l~~~-~~~~~~~t~~~~~~~-~~~~~~~~~i~Dt~G~~~~~~------~~-----~~~~ 83 (183)
T 1moz_A 17 KELRILILGLDGAGKTTILYRLQIG-EVVTTKPTIGFNVET-LSYKNLKLNVWDLGGQTSIRP------YW-----RCYY 83 (183)
T ss_dssp SCEEEEEEEETTSSHHHHHHHTCCS-EEEEECSSTTCCEEE-EEETTEEEEEEEEC----CCT------TG-----GGTT
T ss_pred CccEEEEECCCCCCHHHHHHHHhcC-CcCccCCcCccceEE-EEECCEEEEEEECCCCHhHHH------HH-----HHHh
Confidence 4579999999999999999999976 345555665644332 222478899999999753111 11 1234
Q ss_pred CceeEEEEEEecCCc
Q 029512 171 NFWSCTCFLIYIFYT 185 (192)
Q Consensus 171 ~~~~~v~~vvD~s~~ 185 (192)
+.+|++++|+|++++
T Consensus 84 ~~~d~ii~v~d~~~~ 98 (183)
T 1moz_A 84 ADTAAVIFVVDSTDK 98 (183)
T ss_dssp TTEEEEEEEEETTCT
T ss_pred ccCCEEEEEEECCCH
Confidence 578999999998765
No 61
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=99.17 E-value=7.5e-11 Score=91.17 Aligned_cols=85 Identities=15% Similarity=0.103 Sum_probs=52.3
Q ss_pred CCCeEEEEecCCCcHHHHHHHHhhccCceeecCCCCceeEEEEEeeC---CeEEEEECCCCCCCCChHHHHHHHHHHHhh
Q 029512 91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLG---TKLCLVDLPGYGFAYAKEEVKDAWEELVSI 167 (192)
Q Consensus 91 ~~~~i~lvG~~n~GKStlin~L~~~~~~~~~~~~~g~T~~~~~~~~~---~~~~lvDtPG~~~~~~~~~~~~~~~~~~~l 167 (192)
...+|+++|.+|+|||||+|+|++...........+.+........+ ..+.+|||||... ....+..+.
T Consensus 25 ~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~------~~~~~~~~~-- 96 (192)
T 2il1_A 25 FKLQVIIIGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVELRGKKIRLQIWDTAGQER------FNSITSAYY-- 96 (192)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHCC--------CCTTEEEEEEEEEETTEEEEEEEEEECCSGG------GHHHHHHHH--
T ss_pred CceEEEEECCCCCCHHHHHHHHhcCCCCcCCCCccceeEEEEEEEECCeEEEEEEEeCCCcHH------HHHHHHHHh--
Confidence 34589999999999999999999873222222333333333333332 4789999999532 122233332
Q ss_pred hccCceeEEEEEEecCCce
Q 029512 168 SYRNFWSCTCFLIYIFYTN 186 (192)
Q Consensus 168 ~~~~~~~~v~~vvD~s~~~ 186 (192)
+.+|++++|+|+++++
T Consensus 97 ---~~~d~iilV~D~~~~~ 112 (192)
T 2il1_A 97 ---RSAKGIILVYDITKKE 112 (192)
T ss_dssp ---HHCSEEEEEEETTCHH
T ss_pred ---cCCCEEEEEEECcCHH
Confidence 3579999999987753
No 62
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=99.17 E-value=9.1e-11 Score=87.54 Aligned_cols=84 Identities=15% Similarity=0.011 Sum_probs=55.3
Q ss_pred CCeEEEEecCCCcHHHHHHHHhhccCceeecCCCCceeEEEEEee---CCeEEEEECCCCCCCCChHHHHHHHHHHHhhh
Q 029512 92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKL---GTKLCLVDLPGYGFAYAKEEVKDAWEELVSIS 168 (192)
Q Consensus 92 ~~~i~lvG~~n~GKStlin~L~~~~~~~~~~~~~g~T~~~~~~~~---~~~~~lvDtPG~~~~~~~~~~~~~~~~~~~l~ 168 (192)
..+|+++|.+|+|||||+|+|++...........+.+........ +..+.+|||||.... ...+..+
T Consensus 6 ~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~------~~~~~~~---- 75 (170)
T 1r2q_A 6 QFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERY------HSLAPMY---- 75 (170)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGG------GGGHHHH----
T ss_pred eEEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCcHHh------hhhhHHh----
Confidence 358999999999999999999986322222344455544433332 457899999995321 1112222
Q ss_pred ccCceeEEEEEEecCCce
Q 029512 169 YRNFWSCTCFLIYIFYTN 186 (192)
Q Consensus 169 ~~~~~~~v~~vvD~s~~~ 186 (192)
.+.+|++++|+|+++++
T Consensus 76 -~~~~d~~i~v~d~~~~~ 92 (170)
T 1r2q_A 76 -YRGAQAAIVVYDITNEE 92 (170)
T ss_dssp -HTTCSEEEEEEETTCHH
T ss_pred -ccCCCEEEEEEECCCHH
Confidence 34678999999987653
No 63
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=99.17 E-value=1.3e-10 Score=86.59 Aligned_cols=81 Identities=16% Similarity=0.167 Sum_probs=53.7
Q ss_pred CeEEEEecCCCcHHHHHHHHhhccCceeecCCCCceeEEEEEeeCCeEEEEECCCCCCCCChHHHHHHHHHHHhhhccCc
Q 029512 93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVSISYRNF 172 (192)
Q Consensus 93 ~~i~lvG~~n~GKStlin~L~~~~~~~~~~~~~g~T~~~~~~~~~~~~~lvDtPG~~~~~~~~~~~~~~~~~~~l~~~~~ 172 (192)
.+|+++|.+|||||||+|++++.. .....++.+.... .....+..+.+|||||... ....+..+ .+.
T Consensus 1 ~ki~~~G~~~~GKssl~~~l~~~~-~~~~~~t~~~~~~-~~~~~~~~~~i~Dt~G~~~------~~~~~~~~-----~~~ 67 (164)
T 1r8s_A 1 MRILMVGLDAAGKTTILYKLKLGE-IVTTIPTIGFNVE-TVEYKNISFTVWDVGGQDK------IRPLWRHY-----FQN 67 (164)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHC-SSCCCCCSSCCEE-EEECSSCEEEEEECCCCGG------GHHHHHHH-----TTT
T ss_pred CEEEEECCCCCCHHHHHHHHHcCC-cCcccCcCceeEE-EEEECCEEEEEEEcCCChh------hHHHHHHH-----hcc
Confidence 379999999999999999999863 2222222232211 2222468899999999632 12222222 357
Q ss_pred eeEEEEEEecCCce
Q 029512 173 WSCTCFLIYIFYTN 186 (192)
Q Consensus 173 ~~~v~~vvD~s~~~ 186 (192)
+|++++|+|+++++
T Consensus 68 ~d~~i~v~d~~~~~ 81 (164)
T 1r8s_A 68 TQGLIFVVDSNDRE 81 (164)
T ss_dssp CSEEEEEEETTCGG
T ss_pred CCEEEEEEECCCHH
Confidence 89999999998764
No 64
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=99.17 E-value=1.1e-10 Score=88.17 Aligned_cols=85 Identities=14% Similarity=0.136 Sum_probs=53.4
Q ss_pred CCCeEEEEecCCCcHHHHHHHHhhccCceeecCCCCceeEEEEEeeC---CeEEEEECCCCCCCCChHHHHHHHHHHHhh
Q 029512 91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLG---TKLCLVDLPGYGFAYAKEEVKDAWEELVSI 167 (192)
Q Consensus 91 ~~~~i~lvG~~n~GKStlin~L~~~~~~~~~~~~~g~T~~~~~~~~~---~~~~lvDtPG~~~~~~~~~~~~~~~~~~~l 167 (192)
...+|+++|.+|+|||||+|+|++...........+.+........+ ..+.+|||||... ....+ .
T Consensus 6 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~------~~~~~-----~ 74 (177)
T 1wms_A 6 SLFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQER------FRSLR-----T 74 (177)
T ss_dssp EEEEEEEECCTTSSHHHHHHHHHHSCCCC----CCSEEEEEEEEEETTEEEEEEEEECCCCGG------GHHHH-----G
T ss_pred ceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeEEEEEEEECCEEEEEEEEeCCCchh------hhhhH-----H
Confidence 34699999999999999999999874222222333333322333332 4799999999421 11122 1
Q ss_pred hccCceeEEEEEEecCCce
Q 029512 168 SYRNFWSCTCFLIYIFYTN 186 (192)
Q Consensus 168 ~~~~~~~~v~~vvD~s~~~ 186 (192)
...+.+|++++|+|+++++
T Consensus 75 ~~~~~~~~~i~v~d~~~~~ 93 (177)
T 1wms_A 75 PFYRGSDCCLLTFSVDDSQ 93 (177)
T ss_dssp GGGTTCSEEEEEEETTCHH
T ss_pred HHHhcCCEEEEEEECcCHH
Confidence 2345678999999987653
No 65
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.16 E-value=1.3e-10 Score=89.06 Aligned_cols=83 Identities=17% Similarity=0.185 Sum_probs=56.1
Q ss_pred CCCeEEEEecCCCcHHHHHHHHhhccCceeecCCCCceeEEEEEeeCCeEEEEECCCCCCCCChHHHHHHHHHHHhhhcc
Q 029512 91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVSISYR 170 (192)
Q Consensus 91 ~~~~i~lvG~~n~GKStlin~L~~~~~~~~~~~~~g~T~~~~~~~~~~~~~lvDtPG~~~~~~~~~~~~~~~~~~~l~~~ 170 (192)
...+|+++|.+|||||||+|+|++.. .....++.+.+... ....+..+.+|||||..... ..+..+ .
T Consensus 15 ~~~~i~v~G~~~~GKssl~~~l~~~~-~~~~~~t~~~~~~~-~~~~~~~~~i~Dt~G~~~~~------~~~~~~-----~ 81 (187)
T 1zj6_A 15 QEHKVIIVGLDNAGKTTILYQFSMNE-VVHTSPTIGSNVEE-IVINNTRFLMWDIGGQESLR------SSWNTY-----Y 81 (187)
T ss_dssp SCEEEEEEESTTSSHHHHHHHHHTTS-CEEEECCSCSSCEE-EEETTEEEEEEECCC----C------GGGHHH-----H
T ss_pred CccEEEEECCCCCCHHHHHHHHhcCC-CCcCcCCCccceEE-EEECCEEEEEEECCCCHhHH------HHHHHH-----h
Confidence 35699999999999999999999763 33455555544332 22347889999999974311 112222 2
Q ss_pred CceeEEEEEEecCCce
Q 029512 171 NFWSCTCFLIYIFYTN 186 (192)
Q Consensus 171 ~~~~~v~~vvD~s~~~ 186 (192)
+.+|++++|+|+++++
T Consensus 82 ~~~d~ii~v~d~~~~~ 97 (187)
T 1zj6_A 82 TNTEFVIVVVDSTDRE 97 (187)
T ss_dssp TTCCEEEEEEETTCTT
T ss_pred cCCCEEEEEEeCCCHH
Confidence 4689999999998763
No 66
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=99.16 E-value=1.6e-10 Score=85.88 Aligned_cols=81 Identities=14% Similarity=0.089 Sum_probs=50.8
Q ss_pred CCeEEEEecCCCcHHHHHHHHhhccCceeecCCCCceeE---EEEEeeC--CeEEEEECCCCCCCCChHHHHHHHHHHHh
Q 029512 92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQT---INFFKLG--TKLCLVDLPGYGFAYAKEEVKDAWEELVS 166 (192)
Q Consensus 92 ~~~i~lvG~~n~GKStlin~L~~~~~~~~~~~~~g~T~~---~~~~~~~--~~~~lvDtPG~~~~~~~~~~~~~~~~~~~ 166 (192)
..+|+++|.+|+|||||+|+|++.. . .....+++.. ......+ ..+.+|||||... ....+..+.
T Consensus 4 ~~~i~v~G~~~~GKssl~~~l~~~~-~--~~~~~~t~~~~~~~~~~~~~~~~~~~l~D~~G~~~------~~~~~~~~~- 73 (168)
T 1u8z_A 4 LHKVIMVGSGGVGKSALTLQFMYDE-F--VEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQED------YAAIRDNYF- 73 (168)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSC-C--CSCCCTTCCEEEEEEEEETTEEEEEEEEECCC---------CHHHHHHHH-
T ss_pred eEEEEEECCCCCCHHHHHHHHHhCc-c--CCCCCCCcceEEEEEEEECCEEEEEEEEECCCcch------hHHHHHHHh-
Confidence 3589999999999999999999873 2 2222232222 1222222 4789999999532 112233332
Q ss_pred hhccCceeEEEEEEecCCce
Q 029512 167 ISYRNFWSCTCFLIYIFYTN 186 (192)
Q Consensus 167 l~~~~~~~~v~~vvD~s~~~ 186 (192)
+.+|.+++|+|+++++
T Consensus 74 ----~~~d~~i~v~d~~~~~ 89 (168)
T 1u8z_A 74 ----RSGEGFLCVFSITEME 89 (168)
T ss_dssp ----HHCSEEEEEEETTCHH
T ss_pred ----hcCCEEEEEEECCCHH
Confidence 3578999999988653
No 67
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=99.15 E-value=1.2e-10 Score=88.99 Aligned_cols=83 Identities=18% Similarity=0.214 Sum_probs=56.8
Q ss_pred CCCeEEEEecCCCcHHHHHHHHhhccCceeecCCCCceeEEEEEeeCCeEEEEECCCCCCCCChHHHHHHHHHHHhhhcc
Q 029512 91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVSISYR 170 (192)
Q Consensus 91 ~~~~i~lvG~~n~GKStlin~L~~~~~~~~~~~~~g~T~~~~~~~~~~~~~lvDtPG~~~~~~~~~~~~~~~~~~~l~~~ 170 (192)
...+|+++|.+|||||||+|++++.. .....++.+.+.. .....+..+.+|||||... ....+ ....
T Consensus 17 ~~~~i~v~G~~~~GKssl~~~l~~~~-~~~~~~t~~~~~~-~~~~~~~~~~~~Dt~G~~~------~~~~~-----~~~~ 83 (186)
T 1ksh_A 17 RELRLLMLGLDNAGKTTILKKFNGED-VDTISPTLGFNIK-TLEHRGFKLNIWDVGGQKS------LRSYW-----RNYF 83 (186)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHTTCC-CSSCCCCSSEEEE-EEEETTEEEEEEEECCSHH------HHTTG-----GGGC
T ss_pred CeeEEEEECCCCCCHHHHHHHHhcCC-CCcccccCccceE-EEEECCEEEEEEECCCCHh------HHHHH-----HHHh
Confidence 45799999999999999999999873 3333344443332 2222478899999999621 11111 2335
Q ss_pred CceeEEEEEEecCCce
Q 029512 171 NFWSCTCFLIYIFYTN 186 (192)
Q Consensus 171 ~~~~~v~~vvD~s~~~ 186 (192)
+.+|++++|+|+++++
T Consensus 84 ~~~d~ii~v~d~~~~~ 99 (186)
T 1ksh_A 84 ESTDGLIWVVDSADRQ 99 (186)
T ss_dssp TTCSEEEEEEETTCGG
T ss_pred cCCCEEEEEEECcCHH
Confidence 6789999999998764
No 68
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=99.15 E-value=7e-11 Score=91.23 Aligned_cols=84 Identities=14% Similarity=0.037 Sum_probs=58.4
Q ss_pred CCeEEEEecCCCcHHHHHHHHhhccCceeecCCCCceeEEEEEee---CCeEEEEECCCCCCCCChHHHHHHHHHHHhhh
Q 029512 92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKL---GTKLCLVDLPGYGFAYAKEEVKDAWEELVSIS 168 (192)
Q Consensus 92 ~~~i~lvG~~n~GKStlin~L~~~~~~~~~~~~~g~T~~~~~~~~---~~~~~lvDtPG~~~~~~~~~~~~~~~~~~~l~ 168 (192)
..+|+++|.+|+|||||+|+|++........+..|.|........ ...+.+|||||.... ...+..+
T Consensus 23 ~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~------~~~~~~~---- 92 (192)
T 2fg5_A 23 ELKVCLLGDTGVGKSSIVCRFVQDHFDHNISPTIGASFMTKTVPCGNELHKFLIWDTAGQERF------HSLAPMY---- 92 (192)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHCCCCTTCCCCSSEEEEEEEEECSSSEEEEEEEEECCSGGG------GGGTHHH----
T ss_pred ceEEEEECcCCCCHHHHHHHHhcCCCCCCcCCCcceeEEEEEEEeCCEEEEEEEEcCCCchhh------HhhhHHh----
Confidence 469999999999999999999987422345566677665554443 357999999995321 1112222
Q ss_pred ccCceeEEEEEEecCCce
Q 029512 169 YRNFWSCTCFLIYIFYTN 186 (192)
Q Consensus 169 ~~~~~~~v~~vvD~s~~~ 186 (192)
.+.+|++++|+|+++++
T Consensus 93 -~~~~d~iilV~d~~~~~ 109 (192)
T 2fg5_A 93 -YRGSAAAVIVYDITKQD 109 (192)
T ss_dssp -HTTCSEEEEEEETTCTH
T ss_pred -hccCCEEEEEEeCCCHH
Confidence 24678999999987764
No 69
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=99.15 E-value=1.3e-10 Score=89.07 Aligned_cols=26 Identities=35% Similarity=0.409 Sum_probs=23.5
Q ss_pred CCCeEEEEecCCCcHHHHHHHHhhcc
Q 029512 91 DLPEIAFAGRSNVGKSSMLNALTRQW 116 (192)
Q Consensus 91 ~~~~i~lvG~~n~GKStlin~L~~~~ 116 (192)
...+|+++|.+|+|||||+|+|++..
T Consensus 6 ~~~ki~v~G~~~~GKSsli~~l~~~~ 31 (208)
T 3clv_A 6 SSYKTVLLGESSVGKSSIVLRLTKDT 31 (208)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHSC
T ss_pred cceEEEEECCCCCCHHHHHHHHHhCc
Confidence 35699999999999999999999873
No 70
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=99.15 E-value=1.8e-10 Score=88.58 Aligned_cols=83 Identities=16% Similarity=0.185 Sum_probs=55.1
Q ss_pred CCeEEEEecCCCcHHHHHHHHhhccCceeecCCCCceeEEEEEeeCCeEEEEECCCCCCCCChHHHHHHHHHHHhhhccC
Q 029512 92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVSISYRN 171 (192)
Q Consensus 92 ~~~i~lvG~~n~GKStlin~L~~~~~~~~~~~~~g~T~~~~~~~~~~~~~lvDtPG~~~~~~~~~~~~~~~~~~~l~~~~ 171 (192)
..+|+++|.+|||||||+|+|++........+..+.+.. .....+..+.+|||||.. .....+..+ .+
T Consensus 22 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~l~Dt~G~~------~~~~~~~~~-----~~ 89 (188)
T 1zd9_A 22 EMELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFNMR-KITKGNVTIKLWDIGGQP------RFRSMWERY-----CR 89 (188)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEEE-EEEETTEEEEEEEECCSH------HHHTTHHHH-----HT
T ss_pred ccEEEEECCCCCCHHHHHHHHHcCCCCCccCCCCceeEE-EEEeCCEEEEEEECCCCH------hHHHHHHHH-----Hc
Confidence 468999999999999999999986321122233333322 222347789999999942 222223222 25
Q ss_pred ceeEEEEEEecCCce
Q 029512 172 FWSCTCFLIYIFYTN 186 (192)
Q Consensus 172 ~~~~v~~vvD~s~~~ 186 (192)
.+|++++|+|+++++
T Consensus 90 ~~d~ii~v~D~~~~~ 104 (188)
T 1zd9_A 90 GVSAIVYMVDAADQE 104 (188)
T ss_dssp TCSEEEEEEETTCGG
T ss_pred cCCEEEEEEECCCHH
Confidence 689999999997754
No 71
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=99.15 E-value=1.3e-10 Score=89.48 Aligned_cols=84 Identities=15% Similarity=0.088 Sum_probs=54.5
Q ss_pred CCeEEEEecCCCcHHHHHHHHhhccCceeecCCCCceeEEEEEe---eCCeEEEEECCCCCCCCChHHHHHHHHHHHhhh
Q 029512 92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFK---LGTKLCLVDLPGYGFAYAKEEVKDAWEELVSIS 168 (192)
Q Consensus 92 ~~~i~lvG~~n~GKStlin~L~~~~~~~~~~~~~g~T~~~~~~~---~~~~~~lvDtPG~~~~~~~~~~~~~~~~~~~l~ 168 (192)
..+|+++|.+|+|||||+|+|++...........+.+....... .+..+.+|||||...... .+..+
T Consensus 25 ~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~------~~~~~---- 94 (193)
T 2oil_A 25 VFKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAAVKAQIWDTAGLERYRA------ITSAY---- 94 (193)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHSCCCSSCCCCSSEEEEEEEEEETTEEEEEEEEEESCCCTTCT------THHHH----
T ss_pred ceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCCchhhhh------hhHHH----
Confidence 46999999999999999999998732111223334433333222 246789999999754211 12222
Q ss_pred ccCceeEEEEEEecCCce
Q 029512 169 YRNFWSCTCFLIYIFYTN 186 (192)
Q Consensus 169 ~~~~~~~v~~vvD~s~~~ 186 (192)
.+.+|++++|+|++.+.
T Consensus 95 -~~~~d~vi~v~D~~~~~ 111 (193)
T 2oil_A 95 -YRGAVGALLVFDLTKHQ 111 (193)
T ss_dssp -HTTCCEEEEEEETTCHH
T ss_pred -hccCCEEEEEEECCCHH
Confidence 24678999999987653
No 72
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=99.15 E-value=4.1e-11 Score=90.55 Aligned_cols=82 Identities=18% Similarity=0.225 Sum_probs=55.7
Q ss_pred CCCCeEEEEecCCCcHHHHHHHHhhccCceeecCCCCceeEEE---EEeeCCeEEEEECCCCCCCCChHHHHHHHHHHHh
Q 029512 90 PDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTIN---FFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVS 166 (192)
Q Consensus 90 ~~~~~i~lvG~~n~GKStlin~L~~~~~~~~~~~~~g~T~~~~---~~~~~~~~~lvDtPG~~~~~~~~~~~~~~~~~~~ 166 (192)
...++|+++|.+|||||||+|+|++.. ......+++|.+.. ....+..+.+|||||....... +
T Consensus 6 ~~~~~i~v~G~~~~GKssl~~~l~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~------~----- 72 (178)
T 2lkc_A 6 ERPPVVTIMGHVDHGKTTLLDAIRHSK--VTEQEAGGITQHIGAYQVTVNDKKITFLDTPGHEAFTTM------R----- 72 (178)
T ss_dssp CCCCEEEEESCTTTTHHHHHHHHHTTC--SSCSSCCSSSTTCCCCEEEETTEEEEESCCCSSSSSSCS------C-----
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCc--cccCCCCceeEeeeEEEEEeCCceEEEEECCCCHHHHHH------H-----
Confidence 356799999999999999999999863 22333444443322 2234678999999996431110 0
Q ss_pred hhccCceeEEEEEEecCC
Q 029512 167 ISYRNFWSCTCFLIYIFY 184 (192)
Q Consensus 167 l~~~~~~~~v~~vvD~s~ 184 (192)
......+|++++|+|+++
T Consensus 73 ~~~~~~~d~~i~v~d~~~ 90 (178)
T 2lkc_A 73 ARGAQVTDIVILVVAADD 90 (178)
T ss_dssp CSSCCCCCEEEEEEETTC
T ss_pred HHHHhhCCEEEEEEECCC
Confidence 233467889999999876
No 73
>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A
Probab=99.15 E-value=1.4e-10 Score=98.71 Aligned_cols=26 Identities=42% Similarity=0.630 Sum_probs=23.9
Q ss_pred CCCeEEEEecCCCcHHHHHHHHhhcc
Q 029512 91 DLPEIAFAGRSNVGKSSMLNALTRQW 116 (192)
Q Consensus 91 ~~~~i~lvG~~n~GKStlin~L~~~~ 116 (192)
..++|+++|.+|||||||+|+|+|..
T Consensus 30 ~~~~I~vvG~~~~GKSSLln~L~g~~ 55 (353)
T 2x2e_A 30 DLPQIAVVGGQSAGKSSVLENFVGRD 55 (353)
T ss_dssp CCCEEEEECBTTSSHHHHHHTTTTSC
T ss_pred CCCeEEEECCCCCCHHHHHHHHhCCC
Confidence 46899999999999999999999973
No 74
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=99.14 E-value=1.5e-10 Score=86.02 Aligned_cols=80 Identities=10% Similarity=0.063 Sum_probs=50.0
Q ss_pred CeEEEEecCCCcHHHHHHHHhhccCceeecCCCCceeE--EEEEee-C--CeEEEEECCCCCCCCChHHHHHHHHHHHhh
Q 029512 93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQT--INFFKL-G--TKLCLVDLPGYGFAYAKEEVKDAWEELVSI 167 (192)
Q Consensus 93 ~~i~lvG~~n~GKStlin~L~~~~~~~~~~~~~g~T~~--~~~~~~-~--~~~~lvDtPG~~~~~~~~~~~~~~~~~~~l 167 (192)
.+|+++|.+|+|||||+|+|++... . .....++.+ ...... + ..+.+|||||.... . ..+..+.
T Consensus 4 ~~i~v~G~~~~GKSsli~~l~~~~~-~--~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~---~---~~~~~~~-- 72 (167)
T 1kao_A 4 YKVVVLGSGGVGKSALTVQFVTGTF-I--EKYDPTIEDFYRKEIEVDSSPSVLEILDTAGTEQF---A---SMRDLYI-- 72 (167)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSCC-C--SCCCTTCCEEEEEEEEETTEEEEEEEEECCCTTCC---H---HHHHHHH--
T ss_pred EEEEEECCCCCCHHHHHHHHHcCCC-c--ccCCCCcceeEEEEEEECCEEEEEEEEECCCchhh---H---HHHHHHh--
Confidence 5899999999999999999998632 2 222222221 122222 2 44899999995431 1 1222222
Q ss_pred hccCceeEEEEEEecCCce
Q 029512 168 SYRNFWSCTCFLIYIFYTN 186 (192)
Q Consensus 168 ~~~~~~~~v~~vvD~s~~~ 186 (192)
+.++.+++|+|+++++
T Consensus 73 ---~~~~~~i~v~d~~~~~ 88 (167)
T 1kao_A 73 ---KNGQGFILVYSLVNQQ 88 (167)
T ss_dssp ---HHCSEEEEEEETTCHH
T ss_pred ---ccCCEEEEEEeCCCHH
Confidence 3468899999987653
No 75
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=99.14 E-value=2.2e-10 Score=88.61 Aligned_cols=82 Identities=21% Similarity=0.194 Sum_probs=56.5
Q ss_pred CCeEEEEecCCCcHHHHHHHHhhccCceeecCCCCceeEEEEEeeCCeEEEEECCCCCCCCChHHHHHHHHHHHhhhccC
Q 029512 92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVSISYRN 171 (192)
Q Consensus 92 ~~~i~lvG~~n~GKStlin~L~~~~~~~~~~~~~g~T~~~~~~~~~~~~~lvDtPG~~~~~~~~~~~~~~~~~~~l~~~~ 171 (192)
..+|+++|.+|||||||+|++++. ......+..+.+.. .....+..+.++||||...... .+ ....+
T Consensus 23 ~~ki~~vG~~~vGKSsli~~l~~~-~~~~~~~t~~~~~~-~~~~~~~~~~i~Dt~G~~~~~~------~~-----~~~~~ 89 (190)
T 1m2o_B 23 HGKLLFLGLDNAGKTTLLHMLKND-RLATLQPTWHPTSE-ELAIGNIKFTTFDLGGHIQARR------LW-----KDYFP 89 (190)
T ss_dssp -CEEEEEESTTSSHHHHHHHHHHS-CCCCCCCCCSCEEE-EEEETTEEEEEEECCCSGGGTT------SG-----GGGCT
T ss_pred ccEEEEECCCCCCHHHHHHHHhcC-CCCccccCCCCCeE-EEEECCEEEEEEECCCCHHHHH------HH-----HHHHh
Confidence 459999999999999999999987 34444445555432 2333468899999999643110 11 12235
Q ss_pred ceeEEEEEEecCCce
Q 029512 172 FWSCTCFLIYIFYTN 186 (192)
Q Consensus 172 ~~~~v~~vvD~s~~~ 186 (192)
.+|++++|+|+++++
T Consensus 90 ~~d~~i~v~d~~~~~ 104 (190)
T 1m2o_B 90 EVNGIVFLVDAADPE 104 (190)
T ss_dssp TCCEEEEEEETTCGG
T ss_pred cCCEEEEEEECCChH
Confidence 789999999998764
No 76
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=99.14 E-value=1.3e-10 Score=89.08 Aligned_cols=83 Identities=19% Similarity=0.185 Sum_probs=56.4
Q ss_pred CCCeEEEEecCCCcHHHHHHHHhhccCceeecCCCCceeEEEEEeeCCeEEEEECCCCCCCCChHHHHHHHHHHHhhhcc
Q 029512 91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVSISYR 170 (192)
Q Consensus 91 ~~~~i~lvG~~n~GKStlin~L~~~~~~~~~~~~~g~T~~~~~~~~~~~~~lvDtPG~~~~~~~~~~~~~~~~~~~l~~~ 170 (192)
...+|+++|.+|||||||+|+|++. ......++.+.+.. .....+..+.+|||||....... + ....
T Consensus 21 ~~~~i~v~G~~~~GKssli~~l~~~-~~~~~~~t~~~~~~-~~~~~~~~~~~~Dt~G~~~~~~~------~-----~~~~ 87 (189)
T 2x77_A 21 RKIRVLMLGLDNAGKTSILYRLHLG-DVVTTVPTVGVNLE-TLQYKNISFEVWDLGGQTGVRPY------W-----RCYF 87 (189)
T ss_dssp SCEEEEEEEETTSSHHHHHHHTCCS-CCEEECSSTTCCEE-EEEETTEEEEEEEECCSSSSCCC------C-----SSSS
T ss_pred CceEEEEECCCCCCHHHHHHHHHcC-CCCCcCCCCceEEE-EEEECCEEEEEEECCCCHhHHHH------H-----HHHh
Confidence 3569999999999999999999876 33444444443333 22224778999999996431110 0 1234
Q ss_pred CceeEEEEEEecCCce
Q 029512 171 NFWSCTCFLIYIFYTN 186 (192)
Q Consensus 171 ~~~~~v~~vvD~s~~~ 186 (192)
+.+|++++|+|+++++
T Consensus 88 ~~~d~ii~v~d~~~~~ 103 (189)
T 2x77_A 88 SDTDAVIYVVDSTDRD 103 (189)
T ss_dssp TTCCEEEEEEETTCCT
T ss_pred hcCCEEEEEEeCCCHH
Confidence 5789999999998763
No 77
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=99.14 E-value=3.2e-10 Score=87.04 Aligned_cols=83 Identities=17% Similarity=0.057 Sum_probs=55.0
Q ss_pred CCeEEEEecCCCcHHHHHHHHhhccCceeecCCCCceeEEEEEee---CCeEEEEECCCCCCCCChHHHHHHHHHHHhhh
Q 029512 92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKL---GTKLCLVDLPGYGFAYAKEEVKDAWEELVSIS 168 (192)
Q Consensus 92 ~~~i~lvG~~n~GKStlin~L~~~~~~~~~~~~~g~T~~~~~~~~---~~~~~lvDtPG~~~~~~~~~~~~~~~~~~~l~ 168 (192)
..+|+++|.+|+|||||+|+|++...........+.+........ ...+.+|||||....... + ..
T Consensus 22 ~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~------~-----~~ 90 (189)
T 2gf9_A 22 MFKLLLIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTVYRHDKRIKLQIWDTAGQERYRTI------T-----TA 90 (189)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCCCEEEEEEEEETTEEEEEEEEECCSCCSSCCS------G-----GG
T ss_pred eeEEEEECCCCCCHHHHHHHHHcCCCCCCcCCceeEEEEEEEEEECCeEEEEEEEeCCCcHHHhhh------H-----HH
Confidence 469999999999999999999987421222334455544333332 357899999996431110 1 22
Q ss_pred ccCceeEEEEEEecCCc
Q 029512 169 YRNFWSCTCFLIYIFYT 185 (192)
Q Consensus 169 ~~~~~~~v~~vvD~s~~ 185 (192)
..+.+|++++|+|++++
T Consensus 91 ~~~~~d~ii~v~d~~~~ 107 (189)
T 2gf9_A 91 YYRGAMGFLLMYDIANQ 107 (189)
T ss_dssp GGTTCSEEEEEEETTCH
T ss_pred hccCCCEEEEEEECCCH
Confidence 34567899999998765
No 78
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=99.14 E-value=1.1e-10 Score=88.04 Aligned_cols=83 Identities=19% Similarity=0.135 Sum_probs=53.5
Q ss_pred CCCeEEEEecCCCcHHHHHHHHhhccCceeecCCCCceeEEE--EEee-C--CeEEEEECCCCCCCCChHHHHHHHHHHH
Q 029512 91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTIN--FFKL-G--TKLCLVDLPGYGFAYAKEEVKDAWEELV 165 (192)
Q Consensus 91 ~~~~i~lvG~~n~GKStlin~L~~~~~~~~~~~~~g~T~~~~--~~~~-~--~~~~lvDtPG~~~~~~~~~~~~~~~~~~ 165 (192)
..++|+++|.+|+|||||+|+|++.. ......+..|.+.. .... + ..+.+|||||...... .+
T Consensus 8 ~~~~i~v~G~~~~GKssl~~~l~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~------~~---- 75 (181)
T 3tw8_B 8 HLFKLLIIGDSGVGKSSLLLRFADNT--FSGSYITTIGVDFKIRTVEINGEKVKLQIWDTAGQERFRT------IT---- 75 (181)
T ss_dssp EEEEEEEECCTTSCHHHHHHHHCSCC-----CCTTTBSEEEEEEEEEETTEEEEEEEEEETTGGGCSS------CC----
T ss_pred cceEEEEECCCCCCHHHHHHHHhcCC--CCCccCCCceeEEEEEEEEECCEEEEEEEEcCCCchhhhh------hH----
Confidence 45699999999999999999999874 22344444444432 2222 3 5789999999432110 01
Q ss_pred hhhccCceeEEEEEEecCCce
Q 029512 166 SISYRNFWSCTCFLIYIFYTN 186 (192)
Q Consensus 166 ~l~~~~~~~~v~~vvD~s~~~ 186 (192)
....+.+|++++|+|+++++
T Consensus 76 -~~~~~~~d~~i~v~d~~~~~ 95 (181)
T 3tw8_B 76 -STYYRGTHGVIVVYDVTSAE 95 (181)
T ss_dssp -GGGGTTCSEEEEEEETTCHH
T ss_pred -HHHhccCCEEEEEEECCCHH
Confidence 12245678899999987653
No 79
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=99.13 E-value=1.6e-10 Score=87.93 Aligned_cols=82 Identities=17% Similarity=0.205 Sum_probs=53.9
Q ss_pred CCeEEEEecCCCcHHHHHHHHhhccCceeecCCCCceeEE--EEEeeC---CeEEEEECCCCCCCCChHHHHHHHHHHHh
Q 029512 92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTI--NFFKLG---TKLCLVDLPGYGFAYAKEEVKDAWEELVS 166 (192)
Q Consensus 92 ~~~i~lvG~~n~GKStlin~L~~~~~~~~~~~~~g~T~~~--~~~~~~---~~~~lvDtPG~~~~~~~~~~~~~~~~~~~ 166 (192)
..+|+++|.+|+|||||+|+|++.. . .....+..+.+. .....+ ..+.+|||||... ....+
T Consensus 10 ~~ki~v~G~~~~GKSsli~~l~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~------~~~~~----- 76 (186)
T 2bme_A 10 LFKFLVIGNAGTGKSCLLHQFIEKK-F-KDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQER------FRSVT----- 76 (186)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSS-C-CTTCCCCSEEEEEEEEEEETTEEEEEEEEEECCSGG------GHHHH-----
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCC-C-CCCCCCccceEEEEEEEEECCEEEEEEEEeCCCcHH------HHHHH-----
Confidence 4699999999999999999999873 2 222233333332 222222 4789999999432 11122
Q ss_pred hhccCceeEEEEEEecCCce
Q 029512 167 ISYRNFWSCTCFLIYIFYTN 186 (192)
Q Consensus 167 l~~~~~~~~v~~vvD~s~~~ 186 (192)
....+.+|++++|+|+++++
T Consensus 77 ~~~~~~~d~~i~v~d~~~~~ 96 (186)
T 2bme_A 77 RSYYRGAAGALLVYDITSRE 96 (186)
T ss_dssp HTTSTTCSEEEEEEETTCHH
T ss_pred HHHHhcCCEEEEEEECcCHH
Confidence 22346789999999987753
No 80
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=99.13 E-value=1.2e-10 Score=89.49 Aligned_cols=82 Identities=18% Similarity=0.096 Sum_probs=53.8
Q ss_pred CCeEEEEecCCCcHHHHHHHHhhccCceeecCCCCceeEE--EEEee-C--CeEEEEECCCCCCCCChHHHHHHHHHHHh
Q 029512 92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTI--NFFKL-G--TKLCLVDLPGYGFAYAKEEVKDAWEELVS 166 (192)
Q Consensus 92 ~~~i~lvG~~n~GKStlin~L~~~~~~~~~~~~~g~T~~~--~~~~~-~--~~~~lvDtPG~~~~~~~~~~~~~~~~~~~ 166 (192)
..+|+++|.+|+|||||+|+|++.. ......+..+.+. ..... + ..+.+|||||..... ..+..+
T Consensus 16 ~~ki~v~G~~~~GKSsli~~l~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~------~~~~~~-- 85 (196)
T 3tkl_A 16 LFKLLLIGDSGVGKSCLLLRFADDT--YTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFR------TITSSY-- 85 (196)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSC--CCSCCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGC------TTHHHH--
T ss_pred ceEEEEECcCCCCHHHHHHHHHcCC--CCCCCCCcccceEEEEEEEECCEEEEEEEEECCCcHhhh------hhHHHH--
Confidence 4699999999999999999999874 2223334444333 33332 2 468999999953211 112222
Q ss_pred hhccCceeEEEEEEecCCce
Q 029512 167 ISYRNFWSCTCFLIYIFYTN 186 (192)
Q Consensus 167 l~~~~~~~~v~~vvD~s~~~ 186 (192)
.+.+|++++|+|+++++
T Consensus 86 ---~~~~d~~i~v~d~~~~~ 102 (196)
T 3tkl_A 86 ---YRGAHGIIVVYDVTDQE 102 (196)
T ss_dssp ---HTTCSEEEEEEETTCHH
T ss_pred ---HhhCCEEEEEEECcCHH
Confidence 24679999999988753
No 81
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=99.13 E-value=1.2e-10 Score=90.32 Aligned_cols=84 Identities=21% Similarity=0.122 Sum_probs=51.2
Q ss_pred CCCeEEEEecCCCcHHHHHHHHhhccCceeecCCCCceeEEEEEee---CCeEEEEECCCCCCCCChHHHHHHHHHHHhh
Q 029512 91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKL---GTKLCLVDLPGYGFAYAKEEVKDAWEELVSI 167 (192)
Q Consensus 91 ~~~~i~lvG~~n~GKStlin~L~~~~~~~~~~~~~g~T~~~~~~~~---~~~~~lvDtPG~~~~~~~~~~~~~~~~~~~l 167 (192)
...+|+++|.+|||||||+|+|++...........+.+........ ...+.+|||||.... ...+..+
T Consensus 27 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~------~~~~~~~--- 97 (199)
T 2p5s_A 27 KAYKIVLAGDAAVGKSSFLMRLCKNEFRENISATLGVDFQMKTLIVDGERTVLQLWDTAGQERF------RSIAKSY--- 97 (199)
T ss_dssp -CEEEEEESSTTSSHHHHHHHHHHCCCC----------CEEEEEEETTEEEEEEEEECTTCTTC------HHHHHHH---
T ss_pred CCeEEEEECcCCCCHHHHHHHHHhCCCCccCCCCccceeEEEEEEECCEEEEEEEEECCCCcch------hhhHHHH---
Confidence 4579999999999999999999987422333444454444333332 356899999995421 1223222
Q ss_pred hccCceeEEEEEEecCCc
Q 029512 168 SYRNFWSCTCFLIYIFYT 185 (192)
Q Consensus 168 ~~~~~~~~v~~vvD~s~~ 185 (192)
.+.+|++++|+|++++
T Consensus 98 --~~~~d~iilv~d~~~~ 113 (199)
T 2p5s_A 98 --FRKADGVLLLYDVTCE 113 (199)
T ss_dssp --HHHCSEEEEEEETTCH
T ss_pred --HhhCCEEEEEEECCCh
Confidence 2357899999998765
No 82
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=99.13 E-value=1.2e-10 Score=90.08 Aligned_cols=82 Identities=15% Similarity=0.069 Sum_probs=53.1
Q ss_pred CCCCeEEEEecCCCcHHHHHHHHhhccCceeecCCCCceeEEE--EEee-C--CeEEEEECCCCCCCCChHHHHHHHHHH
Q 029512 90 PDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTIN--FFKL-G--TKLCLVDLPGYGFAYAKEEVKDAWEEL 164 (192)
Q Consensus 90 ~~~~~i~lvG~~n~GKStlin~L~~~~~~~~~~~~~g~T~~~~--~~~~-~--~~~~lvDtPG~~~~~~~~~~~~~~~~~ 164 (192)
...++|+++|.+|+|||||+|+|++.. ......+++.... .... + ..+.+|||||.... ...+..+
T Consensus 12 ~~~~ki~v~G~~~~GKSsli~~l~~~~---~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~------~~~~~~~ 82 (206)
T 2bov_A 12 LALHKVIMVGSGGVGKSALTLQFMYDE---FVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDY------AAIRDNY 82 (206)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHSC---CCTTCCTTCCEEEEEEEEETTEEEEEEEEECCCTTCC------HHHHHHH
T ss_pred CceEEEEEECCCCCCHHHHHHHHHhCC---CCCCCCCccceEEEEEEEECCEEEEEEEEcCCChhhh------HHHHHHH
Confidence 345799999999999999999999873 2333333333221 2222 2 37899999996431 1122222
Q ss_pred HhhhccCceeEEEEEEecCCc
Q 029512 165 VSISYRNFWSCTCFLIYIFYT 185 (192)
Q Consensus 165 ~~l~~~~~~~~v~~vvD~s~~ 185 (192)
. +.+|++++|+|++.+
T Consensus 83 ~-----~~~~~~i~v~d~~~~ 98 (206)
T 2bov_A 83 F-----RSGEGFLCVFSITEM 98 (206)
T ss_dssp H-----HHCSEEEEEEETTCH
T ss_pred H-----hhCCEEEEEEECCCH
Confidence 2 246889999998764
No 83
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=99.13 E-value=1.6e-10 Score=86.98 Aligned_cols=81 Identities=16% Similarity=0.134 Sum_probs=52.0
Q ss_pred CCeEEEEecCCCcHHHHHHHHhhccCceeecCCCCceeEEE--EEee-C--CeEEEEECCCCCCCCChHHHHHHHHHHHh
Q 029512 92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTIN--FFKL-G--TKLCLVDLPGYGFAYAKEEVKDAWEELVS 166 (192)
Q Consensus 92 ~~~i~lvG~~n~GKStlin~L~~~~~~~~~~~~~g~T~~~~--~~~~-~--~~~~lvDtPG~~~~~~~~~~~~~~~~~~~ 166 (192)
..+|+++|.+|+|||||+|+|++.. . .....+..+.+.. .... + ..+.+|||||.... ...+..+
T Consensus 14 ~~~i~v~G~~~~GKssli~~l~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~------~~~~~~~-- 83 (179)
T 2y8e_A 14 KFKLVFLGEQSVGKTSLITRFMYDS-F-DNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERF------RSLIPSY-- 83 (179)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSC-C-CSSCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGG------GGGSHHH--
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCC-C-CCCCCCceeeEEEEEEEEECCeEEEEEEEECCCcHHH------HHHHHHH--
Confidence 3689999999999999999999863 2 2222333333332 2222 2 47999999995321 1112222
Q ss_pred hhccCceeEEEEEEecCCc
Q 029512 167 ISYRNFWSCTCFLIYIFYT 185 (192)
Q Consensus 167 l~~~~~~~~v~~vvD~s~~ 185 (192)
.+.+|++++|+|++++
T Consensus 84 ---~~~~d~~i~v~d~~~~ 99 (179)
T 2y8e_A 84 ---IRDSTVAVVVYDITNT 99 (179)
T ss_dssp ---HHTCSEEEEEEETTCH
T ss_pred ---hcCCCEEEEEEECCCH
Confidence 2357899999998765
No 84
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=99.12 E-value=3e-10 Score=84.94 Aligned_cols=84 Identities=14% Similarity=0.069 Sum_probs=51.1
Q ss_pred CCeEEEEecCCCcHHHHHHHHhhccCceeecCCCCceeEEEEEee-C--CeEEEEECCCCCCCCChHHHHHHHHHHHhhh
Q 029512 92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKL-G--TKLCLVDLPGYGFAYAKEEVKDAWEELVSIS 168 (192)
Q Consensus 92 ~~~i~lvG~~n~GKStlin~L~~~~~~~~~~~~~g~T~~~~~~~~-~--~~~~lvDtPG~~~~~~~~~~~~~~~~~~~l~ 168 (192)
..+|+++|.+|+|||||+|+|++...........+.+........ + ..+.+|||||.... ...+ ..
T Consensus 6 ~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~------~~~~-----~~ 74 (170)
T 1z08_A 6 SFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWDTAGQERF------HALG-----PI 74 (170)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHHCCCCSSCCCCCSCEEEEEEEESSSCEEEEEEEECCCC------------------CC
T ss_pred ceEEEEECcCCCCHHHHHHHHHcCCCCcCCCCccceEEEEEEEEECCEEEEEEEEECCCcHhh------hhhH-----HH
Confidence 458999999999999999999987311111222232222222322 2 36889999994321 1111 12
Q ss_pred ccCceeEEEEEEecCCce
Q 029512 169 YRNFWSCTCFLIYIFYTN 186 (192)
Q Consensus 169 ~~~~~~~v~~vvD~s~~~ 186 (192)
..+.+|.+++|+|+++++
T Consensus 75 ~~~~~d~~i~v~d~~~~~ 92 (170)
T 1z08_A 75 YYRDSNGAILVYDITDED 92 (170)
T ss_dssp SSTTCSEEEEEEETTCHH
T ss_pred HhccCCEEEEEEECcCHH
Confidence 345779999999987753
No 85
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=99.12 E-value=8.9e-11 Score=88.70 Aligned_cols=85 Identities=12% Similarity=0.144 Sum_probs=50.1
Q ss_pred CCCeEEEEecCCCcHHHHHHHHhhccCceeecCCCCceeEEEEEee----CCeEEEEECCCCCCCCChHHHHHHHHHHHh
Q 029512 91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKL----GTKLCLVDLPGYGFAYAKEEVKDAWEELVS 166 (192)
Q Consensus 91 ~~~~i~lvG~~n~GKStlin~L~~~~~~~~~~~~~g~T~~~~~~~~----~~~~~lvDtPG~~~~~~~~~~~~~~~~~~~ 166 (192)
...+|+++|.+|+|||||+|+|++...........+.+........ ...+.+|||||... ....+
T Consensus 7 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~------~~~~~----- 75 (182)
T 1ky3_A 7 NILKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAGQER------FQSLG----- 75 (182)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHSCCCTTC---CCCSCEEEEECCSSSCCEEEEEECCC--------------------
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhCcCCcccCCccceEEEEEEEEEcCCcEEEEEEEECCCChH------hhhhh-----
Confidence 4569999999999999999999987321111222232222222222 24789999999421 11111
Q ss_pred hhccCceeEEEEEEecCCce
Q 029512 167 ISYRNFWSCTCFLIYIFYTN 186 (192)
Q Consensus 167 l~~~~~~~~v~~vvD~s~~~ 186 (192)
....+.+|++++|+|+++++
T Consensus 76 ~~~~~~~d~~i~v~d~~~~~ 95 (182)
T 1ky3_A 76 VAFYRGADCCVLVYDVTNAS 95 (182)
T ss_dssp -CCSTTCCEEEEEEETTCHH
T ss_pred HHHhhcCCEEEEEEECCChH
Confidence 22346789999999987653
No 86
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=99.12 E-value=2.2e-10 Score=88.80 Aligned_cols=84 Identities=18% Similarity=0.097 Sum_probs=55.7
Q ss_pred CCeEEEEecCCCcHHHHHHHHhhccCceeecCCCCceeEEEEEee---CCeEEEEECCCCCCCCChHHHHHHHHHHHhhh
Q 029512 92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKL---GTKLCLVDLPGYGFAYAKEEVKDAWEELVSIS 168 (192)
Q Consensus 92 ~~~i~lvG~~n~GKStlin~L~~~~~~~~~~~~~g~T~~~~~~~~---~~~~~lvDtPG~~~~~~~~~~~~~~~~~~~l~ 168 (192)
..+|+++|.+|||||||+|+|++...........+.+........ ...+.+|||||... ....+ ..
T Consensus 8 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~------~~~~~-----~~ 76 (203)
T 1zbd_A 8 MFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGLER------YRTIT-----TA 76 (203)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHTCCCCSCCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGG------GHHHH-----HT
T ss_pred eeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCccceeEEEEEEEECCeEEEEEEEECCCchh------hcchH-----HH
Confidence 468999999999999999999987422222333454444333332 35789999999632 11122 12
Q ss_pred ccCceeEEEEEEecCCce
Q 029512 169 YRNFWSCTCFLIYIFYTN 186 (192)
Q Consensus 169 ~~~~~~~v~~vvD~s~~~ 186 (192)
..+.+|++++|+|+++++
T Consensus 77 ~~~~~d~ii~v~d~~~~~ 94 (203)
T 1zbd_A 77 YYRGAMGFILMYDITNEE 94 (203)
T ss_dssp TGGGCSEEEEEEETTCHH
T ss_pred hhcCCCEEEEEEECcCHH
Confidence 345689999999987653
No 87
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=99.12 E-value=1.7e-10 Score=87.34 Aligned_cols=84 Identities=12% Similarity=0.031 Sum_probs=53.5
Q ss_pred CCeEEEEecCCCcHHHHHHHHhhccCceeecCCCCceeEEEEEee---CCeEEEEECCCCCCCCChHHHHHHHHHHHhhh
Q 029512 92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKL---GTKLCLVDLPGYGFAYAKEEVKDAWEELVSIS 168 (192)
Q Consensus 92 ~~~i~lvG~~n~GKStlin~L~~~~~~~~~~~~~g~T~~~~~~~~---~~~~~lvDtPG~~~~~~~~~~~~~~~~~~~l~ 168 (192)
..+|+++|.+|+|||||+|+|++...........+.+........ ...+.+|||||.... ...+..+
T Consensus 12 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~------~~~~~~~---- 81 (181)
T 2efe_B 12 NAKLVLLGDVGAGKSSLVLRFVKDQFVEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERY------HSLAPMY---- 81 (181)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHHCCCTTTSCCCSCCSEEEEEEEETTEEEEEEEEECCCSGGG------GGGTHHH----
T ss_pred ceEEEEECcCCCCHHHHHHHHHcCCCCCcCCCCceeEEEEEEEEECCEEEEEEEEeCCCChhh------hhhhHHH----
Confidence 468999999999999999999987421111223343333333322 357999999995321 1112222
Q ss_pred ccCceeEEEEEEecCCce
Q 029512 169 YRNFWSCTCFLIYIFYTN 186 (192)
Q Consensus 169 ~~~~~~~v~~vvD~s~~~ 186 (192)
.+.+|++++|+|++++.
T Consensus 82 -~~~~d~~i~v~d~~~~~ 98 (181)
T 2efe_B 82 -YRGAAAAIIVFDVTNQA 98 (181)
T ss_dssp -HTTCSEEEEEEETTCHH
T ss_pred -hccCCEEEEEEECCCHH
Confidence 24678999999987653
No 88
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*
Probab=99.11 E-value=8.4e-11 Score=98.40 Aligned_cols=87 Identities=17% Similarity=0.112 Sum_probs=60.0
Q ss_pred CCeEEEEecCCCcHHHHHHHHhhccCceeecCCCCceeEEEEEe----eCCeEEEEECCCCCCCCChHHHHHHH-HHHHh
Q 029512 92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFK----LGTKLCLVDLPGYGFAYAKEEVKDAW-EELVS 166 (192)
Q Consensus 92 ~~~i~lvG~~n~GKStlin~L~~~~~~~~~~~~~g~T~~~~~~~----~~~~~~lvDtPG~~~~~~~~~~~~~~-~~~~~ 166 (192)
..+|+++|.+|||||||+|++++. ....++..+++|.+..... .+..+.+|||||.. .....+ ..+.
T Consensus 3 ~~KI~lvG~~~vGKSSLi~~l~~~-~~~~~~~~~~~Ti~~~~~~~~~~~~~~l~i~Dt~G~~------~~~~~~~~~~~- 74 (307)
T 3r7w_A 3 GSKLLLMGRSGSGKSSMRSIIFSN-YSAFDTRRLGATIDVEHSHLRFLGNMTLNLWDCGGQD------VFMENYFTKQK- 74 (307)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHSC-CCTGGGGGCCCCCSEEEEEEEETTTEEEEEEEECCSH------HHHHHHHTTTH-
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC-CCCccccCcCCccceEEEEEEeCCceEEEEEECCCcH------HHhhhhhhhHH-
Confidence 358999999999999999999986 3345566778887766543 24689999999952 111100 0000
Q ss_pred hhccCceeEEEEEEecCCce
Q 029512 167 ISYRNFWSCTCFLIYIFYTN 186 (192)
Q Consensus 167 l~~~~~~~~v~~vvD~s~~~ 186 (192)
-...+.+|++++|+|++++.
T Consensus 75 ~~~~~~ad~vi~V~D~t~~~ 94 (307)
T 3r7w_A 75 DHIFQMVQVLIHVFDVESTE 94 (307)
T ss_dssp HHHHTTCSEEEEEEETTCSC
T ss_pred HHHhccCCEEEEEEECCChh
Confidence 11225789999999998764
No 89
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=99.11 E-value=2.2e-10 Score=89.22 Aligned_cols=82 Identities=21% Similarity=0.246 Sum_probs=52.2
Q ss_pred CCeEEEEecCCCcHHHHHHHHhhccCceeecCCCCceeEEEEEeeCCeEEEEECCCCCCCCChHHHHHHHHHHHhhhccC
Q 029512 92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVSISYRN 171 (192)
Q Consensus 92 ~~~i~lvG~~n~GKStlin~L~~~~~~~~~~~~~g~T~~~~~~~~~~~~~lvDtPG~~~~~~~~~~~~~~~~~~~l~~~~ 171 (192)
..+|+++|.+|||||||+|+|++. ......+..+.+.. .....+..+.+|||||...... .+ -...+
T Consensus 25 ~~ki~lvG~~~vGKSsLi~~l~~~-~~~~~~~t~~~~~~-~~~~~~~~l~i~Dt~G~~~~~~------~~-----~~~~~ 91 (198)
T 1f6b_A 25 TGKLVFLGLDNAGKTTLLHMLKDD-RLGQHVPTLHPTSE-ELTIAGMTFTTFDLGGHIQARR------VW-----KNYLP 91 (198)
T ss_dssp CEEEEEEEETTSSHHHHHHHHSCC-------CCCCCSCE-EEEETTEEEEEEEECC----CC------GG-----GGGGG
T ss_pred CcEEEEECCCCCCHHHHHHHHhcC-CCCccCCCCCceeE-EEEECCEEEEEEECCCcHhhHH------HH-----HHHHh
Confidence 458999999999999999999986 33444444455433 2223467899999999543111 11 12234
Q ss_pred ceeEEEEEEecCCce
Q 029512 172 FWSCTCFLIYIFYTN 186 (192)
Q Consensus 172 ~~~~v~~vvD~s~~~ 186 (192)
.+|++++|+|+++++
T Consensus 92 ~~d~~i~v~D~~~~~ 106 (198)
T 1f6b_A 92 AINGIVFLVDCADHE 106 (198)
T ss_dssp GCSEEEEEEETTCGG
T ss_pred cCCEEEEEEECCCHH
Confidence 679999999998764
No 90
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=99.11 E-value=2.5e-10 Score=87.38 Aligned_cols=83 Identities=18% Similarity=0.083 Sum_probs=54.7
Q ss_pred CCeEEEEecCCCcHHHHHHHHhhccCceeecCCCCceeEEEEEee---CCeEEEEECCCCCCCCChHHHHHHHHHHHhhh
Q 029512 92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKL---GTKLCLVDLPGYGFAYAKEEVKDAWEELVSIS 168 (192)
Q Consensus 92 ~~~i~lvG~~n~GKStlin~L~~~~~~~~~~~~~g~T~~~~~~~~---~~~~~lvDtPG~~~~~~~~~~~~~~~~~~~l~ 168 (192)
..+|+++|.+|||||||+|+|++...........+.+........ ...+.+|||||...... .+..+
T Consensus 15 ~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~------~~~~~---- 84 (195)
T 1x3s_A 15 TLKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQERFRT------LTPSY---- 84 (195)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECSSGGGCC------SHHHH----
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCCccCCCccceEEEEEEEEECCeEEEEEEEeCCCchhhhh------hhHHH----
Confidence 469999999999999999999987422222333444444333332 35799999999542111 12222
Q ss_pred ccCceeEEEEEEecCCc
Q 029512 169 YRNFWSCTCFLIYIFYT 185 (192)
Q Consensus 169 ~~~~~~~v~~vvD~s~~ 185 (192)
.+.+|++++|+|++++
T Consensus 85 -~~~~d~ii~v~d~~~~ 100 (195)
T 1x3s_A 85 -YRGAQGVILVYDVTRR 100 (195)
T ss_dssp -HTTCCEEEEEEETTCH
T ss_pred -hccCCEEEEEEECcCH
Confidence 2467899999998765
No 91
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=99.11 E-value=2.4e-10 Score=86.26 Aligned_cols=82 Identities=17% Similarity=0.165 Sum_probs=52.8
Q ss_pred CCCCeEEEEecCCCcHHHHHHHHhhccCceeecCCCCceeEEE--EEee-C--CeEEEEECCCCCCCCChHHHHHHHHHH
Q 029512 90 PDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTIN--FFKL-G--TKLCLVDLPGYGFAYAKEEVKDAWEEL 164 (192)
Q Consensus 90 ~~~~~i~lvG~~n~GKStlin~L~~~~~~~~~~~~~g~T~~~~--~~~~-~--~~~~lvDtPG~~~~~~~~~~~~~~~~~ 164 (192)
...++|+++|.+|+|||||+|+|++.. ......+++.... .... + ..+.+|||||...... .+..+
T Consensus 7 ~~~~~i~v~G~~~~GKssli~~l~~~~---~~~~~~~t~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~------~~~~~ 77 (181)
T 2fn4_A 7 SETHKLVVVGGGGVGKSALTIQFIQSY---FVSDYDPTIEDSYTKICSVDGIPARLDILDTAGQEEFGA------MREQY 77 (181)
T ss_dssp SCEEEEEEEECTTSSHHHHHHHHHHSS---CCSSCCTTCCEEEEEEEEETTEEEEEEEEECCCTTTTSC------CHHHH
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhCc---CccccCCCcCceEEEEEEECCEEEEEEEEECCCchhhHH------HHHHH
Confidence 345699999999999999999999873 2333444433321 1222 2 4688999999653211 11122
Q ss_pred HhhhccCceeEEEEEEecCCc
Q 029512 165 VSISYRNFWSCTCFLIYIFYT 185 (192)
Q Consensus 165 ~~l~~~~~~~~v~~vvD~s~~ 185 (192)
. +.+|++++|+|++++
T Consensus 78 ~-----~~~d~~i~v~d~~~~ 93 (181)
T 2fn4_A 78 M-----RAGHGFLLVFAINDR 93 (181)
T ss_dssp H-----HHCSEEEEEEETTCH
T ss_pred H-----hhCCEEEEEEeCCCH
Confidence 1 246888999998765
No 92
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=99.11 E-value=3.2e-10 Score=88.15 Aligned_cols=84 Identities=21% Similarity=0.143 Sum_probs=53.0
Q ss_pred CCeEEEEecCCCcHHHHHHHHhhccCceeecCCCCceeEEEEEee-C--CeEEEEECCCCCCCCChHHHHHHHHHHHhhh
Q 029512 92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKL-G--TKLCLVDLPGYGFAYAKEEVKDAWEELVSIS 168 (192)
Q Consensus 92 ~~~i~lvG~~n~GKStlin~L~~~~~~~~~~~~~g~T~~~~~~~~-~--~~~~lvDtPG~~~~~~~~~~~~~~~~~~~l~ 168 (192)
..+|+++|.+|+|||||+|+|++...........+.+........ + ..+.+|||||...... .+ ..
T Consensus 8 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~------~~-----~~ 76 (206)
T 2bcg_Y 8 LFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQERFRT------IT-----SS 76 (206)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHCCCCTTCCCSSCCCEEEEEEEETTEEEEEEEECCTTTTTTTC------CC-----GG
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEeCCChHHHHH------HH-----HH
Confidence 469999999999999999999987411111122233332223332 2 4799999999543111 01 12
Q ss_pred ccCceeEEEEEEecCCce
Q 029512 169 YRNFWSCTCFLIYIFYTN 186 (192)
Q Consensus 169 ~~~~~~~v~~vvD~s~~~ 186 (192)
..+.+|++++|+|+++++
T Consensus 77 ~~~~~d~vilv~d~~~~~ 94 (206)
T 2bcg_Y 77 YYRGSHGIIIVYDVTDQE 94 (206)
T ss_dssp GGTTCSEEEEEEETTCHH
T ss_pred hccCCCEEEEEEECcCHH
Confidence 345678999999987653
No 93
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=99.11 E-value=1.9e-10 Score=85.94 Aligned_cols=80 Identities=20% Similarity=0.122 Sum_probs=49.2
Q ss_pred CeEEEEecCCCcHHHHHHHHhhccCceeecCCCCceeEE--EEEee-C--CeEEEEECCCCCCCCChHHHHHHHHHHHhh
Q 029512 93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTI--NFFKL-G--TKLCLVDLPGYGFAYAKEEVKDAWEELVSI 167 (192)
Q Consensus 93 ~~i~lvG~~n~GKStlin~L~~~~~~~~~~~~~g~T~~~--~~~~~-~--~~~~lvDtPG~~~~~~~~~~~~~~~~~~~l 167 (192)
.+|+++|.+|+|||||+|+|++.. . .....+..+.+. ..... + ..+.+|||||...... .+..
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~------~~~~---- 71 (170)
T 1g16_A 4 MKILLIGDSGVGKSCLLVRFVEDK-F-NPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQERFRT------ITTA---- 71 (170)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHCC-C-CC-------CCEEEEEEESSSCEEEEEEECCTTGGGTSC------CCHH----
T ss_pred eEEEEECcCCCCHHHHHHHHHhCC-C-CCCCCCccceeEEEEEEEECCEEEEEEEEeCCCChhhhh------hHHH----
Confidence 589999999999999999999873 2 222223333222 22222 2 3689999999532111 1111
Q ss_pred hccCceeEEEEEEecCCc
Q 029512 168 SYRNFWSCTCFLIYIFYT 185 (192)
Q Consensus 168 ~~~~~~~~v~~vvD~s~~ 185 (192)
..+.+|++++|+|++++
T Consensus 72 -~~~~~d~~i~v~d~~~~ 88 (170)
T 1g16_A 72 -YYRGAMGIILVYDITDE 88 (170)
T ss_dssp -HHTTEEEEEEEEETTCH
T ss_pred -HhccCCEEEEEEECCCH
Confidence 22468999999998765
No 94
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=99.10 E-value=1.9e-10 Score=88.33 Aligned_cols=83 Identities=18% Similarity=0.219 Sum_probs=53.9
Q ss_pred CCCeEEEEecCCCcHHHHHHHHhhcc-CceeecCCCCceeEEEEEeeCCeEEEEECCCCCCCCChHHHHHHHHHHHhhhc
Q 029512 91 DLPEIAFAGRSNVGKSSMLNALTRQW-GVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVSISY 169 (192)
Q Consensus 91 ~~~~i~lvG~~n~GKStlin~L~~~~-~~~~~~~~~g~T~~~~~~~~~~~~~lvDtPG~~~~~~~~~~~~~~~~~~~l~~ 169 (192)
...+|+++|.+|||||||+|+|++.. .........+.+.. .....+..+.+|||||..... ..+ ...
T Consensus 20 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~t~~~~~~-~~~~~~~~~~l~Dt~G~~~~~------~~~-----~~~ 87 (190)
T 2h57_A 20 KEVHVLCLGLDNSGKTTIINKLKPSNAQSQNILPTIGFSIE-KFKSSSLSFTVFDMSGQGRYR------NLW-----EHY 87 (190)
T ss_dssp -CEEEEEEECTTSSHHHHHHHTSCGGGCCSSCCCCSSEEEE-EEECSSCEEEEEEECCSTTTG------GGG-----GGG
T ss_pred CccEEEEECCCCCCHHHHHHHHhcCCCCCCCcCCccceeEE-EEEECCEEEEEEECCCCHHHH------HHH-----HHH
Confidence 45699999999999999999999873 12222233332222 122236889999999954311 111 122
Q ss_pred cCceeEEEEEEecCCc
Q 029512 170 RNFWSCTCFLIYIFYT 185 (192)
Q Consensus 170 ~~~~~~v~~vvD~s~~ 185 (192)
.+.+|++++|+|++++
T Consensus 88 ~~~~d~ii~v~d~~~~ 103 (190)
T 2h57_A 88 YKEGQAIIFVIDSSDR 103 (190)
T ss_dssp GGGCSEEEEEEETTCH
T ss_pred HhcCCEEEEEEECCCH
Confidence 3567999999998765
No 95
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=99.10 E-value=2.4e-10 Score=85.25 Aligned_cols=84 Identities=15% Similarity=0.072 Sum_probs=52.1
Q ss_pred CCeEEEEecCCCcHHHHHHHHhhccCceeecCCCCceeEEEEEee---CCeEEEEECCCCCCCCChHHHHHHHHHHHhhh
Q 029512 92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKL---GTKLCLVDLPGYGFAYAKEEVKDAWEELVSIS 168 (192)
Q Consensus 92 ~~~i~lvG~~n~GKStlin~L~~~~~~~~~~~~~g~T~~~~~~~~---~~~~~lvDtPG~~~~~~~~~~~~~~~~~~~l~ 168 (192)
..+|+++|.+|+|||||+|+|++...........+.+........ ...+.+|||||...... .+..+
T Consensus 5 ~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~------~~~~~---- 74 (168)
T 1z2a_A 5 AIKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQEEFDA------ITKAY---- 74 (168)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHCCCCCCSSCCCSSSEEEEEEEETTEEEEEEEECCTTGGGTTC------CCHHH----
T ss_pred eEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCceEEEEEEEEEEECCEEEEEEEEcCCCcHhHHH------HHHHH----
Confidence 468999999999999999999986321111222232222222222 34799999999432110 11111
Q ss_pred ccCceeEEEEEEecCCce
Q 029512 169 YRNFWSCTCFLIYIFYTN 186 (192)
Q Consensus 169 ~~~~~~~v~~vvD~s~~~ 186 (192)
.+.+|++++|+|+++++
T Consensus 75 -~~~~d~~i~v~d~~~~~ 91 (168)
T 1z2a_A 75 -YRGAQACVLVFSTTDRE 91 (168)
T ss_dssp -HTTCCEEEEEEETTCHH
T ss_pred -hcCCCEEEEEEECcCHH
Confidence 24678999999987654
No 96
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=99.10 E-value=3.8e-10 Score=85.96 Aligned_cols=84 Identities=18% Similarity=0.062 Sum_probs=53.2
Q ss_pred CCeEEEEecCCCcHHHHHHHHhhccCceeecCCCCceeE-EEEEe-e-----------CCeEEEEECCCCCCCCChHHHH
Q 029512 92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQT-INFFK-L-----------GTKLCLVDLPGYGFAYAKEEVK 158 (192)
Q Consensus 92 ~~~i~lvG~~n~GKStlin~L~~~~~~~~~~~~~g~T~~-~~~~~-~-----------~~~~~lvDtPG~~~~~~~~~~~ 158 (192)
..+|+++|.+|+|||||+|+|++...........+.+.. ..... . ...+.+|||||... ..
T Consensus 11 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~------~~ 84 (195)
T 3bc1_A 11 LIKFLALGDSGVGKTSVLYQYTDGKFNSKFITTVGIDFREKRVVYRANGPDGAVGRGQRIHLQLWDTAGLER------FR 84 (195)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEECTTSCCCSSCCCEEEEEEEEEECCSGG------GH
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCCCCcCcccccceeeeeEEEEEecCCcccccccCcEEEEEEEeCCCcHH------HH
Confidence 469999999999999999999986321111222232222 12222 2 23799999999632 11
Q ss_pred HHHHHHHhhhccCceeEEEEEEecCCce
Q 029512 159 DAWEELVSISYRNFWSCTCFLIYIFYTN 186 (192)
Q Consensus 159 ~~~~~~~~l~~~~~~~~v~~vvD~s~~~ 186 (192)
..+ ....+.+|++++|+|+++++
T Consensus 85 ~~~-----~~~~~~~d~~i~v~d~~~~~ 107 (195)
T 3bc1_A 85 SLT-----TAFFRDAMGFLLLFDLTNEQ 107 (195)
T ss_dssp HHH-----HHTTTTCSEEEEEEETTCHH
T ss_pred HHH-----HHHHcCCCEEEEEEECCCHH
Confidence 222 22345789999999997653
No 97
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=99.10 E-value=2.1e-10 Score=85.72 Aligned_cols=84 Identities=14% Similarity=-0.085 Sum_probs=51.4
Q ss_pred CCeEEEEecCCCcHHHHHHHHhhccCceeecCCCCceeEEEEEee--CCeEEEEECCCCCCCCChHHHHHHHHHHHhhhc
Q 029512 92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKL--GTKLCLVDLPGYGFAYAKEEVKDAWEELVSISY 169 (192)
Q Consensus 92 ~~~i~lvG~~n~GKStlin~L~~~~~~~~~~~~~g~T~~~~~~~~--~~~~~lvDtPG~~~~~~~~~~~~~~~~~~~l~~ 169 (192)
..+|+++|.+|+|||||+|+|++........+..+.+........ ...+.+|||||.... . ..+..+.
T Consensus 3 ~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~---~---~~~~~~~---- 72 (172)
T 2erx_A 3 DYRVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTYRQVISCDKSICTLQITDTTGSHQF---P---AMQRLSI---- 72 (172)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHTCCCCSSCCCCSCEEEEEEEEETTEEEEEEEEECCSCSSC---H---HHHHHHH----
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCccccEEEEEEECCEEEEEEEEECCCchhh---H---HHHHHhc----
Confidence 358999999999999999999986311111122222222122111 346899999996431 1 1222222
Q ss_pred cCceeEEEEEEecCCce
Q 029512 170 RNFWSCTCFLIYIFYTN 186 (192)
Q Consensus 170 ~~~~~~v~~vvD~s~~~ 186 (192)
+.+|++++|+|+++++
T Consensus 73 -~~~~~~i~v~d~~~~~ 88 (172)
T 2erx_A 73 -SKGHAFILVYSITSRQ 88 (172)
T ss_dssp -HHCSEEEEEEETTCHH
T ss_pred -ccCCEEEEEEECcCHH
Confidence 2468999999987653
No 98
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.10 E-value=1.8e-10 Score=89.68 Aligned_cols=82 Identities=21% Similarity=0.143 Sum_probs=52.6
Q ss_pred CCCeEEEEecCCCcHHHHHHHHhhccCceeecCCCCceeE--EEEEee-C--CeEEEEECCCCCCCCChHHHHHHHHHHH
Q 029512 91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQT--INFFKL-G--TKLCLVDLPGYGFAYAKEEVKDAWEELV 165 (192)
Q Consensus 91 ~~~~i~lvG~~n~GKStlin~L~~~~~~~~~~~~~g~T~~--~~~~~~-~--~~~~lvDtPG~~~~~~~~~~~~~~~~~~ 165 (192)
..++|+++|.+|||||||+|+|++.. . .....+..+.+ ...... + ..+.+|||||..... ..+..
T Consensus 19 ~~~~i~v~G~~~~GKSsli~~l~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~------~~~~~-- 88 (213)
T 3cph_A 19 SIMKILLIGDSGVGKSCLLVRFVEDK-F-NPSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQERFR------TITTA-- 88 (213)
T ss_dssp -CEEEEEECSTTSSHHHHHHHHHHCC-C-CCSSSCCCSCCEEEEEEEETTEEEEEEEECCTTGGGGT------CCCHH--
T ss_pred cceEEEEECCCCCCHHHHHHHHHhCC-C-CcccCCcccceEEEEEEEECCEEEEEEEEeCCCcHHHH------HHHHH--
Confidence 45799999999999999999999873 2 22223333332 223332 3 579999999953211 01111
Q ss_pred hhhccCceeEEEEEEecCCc
Q 029512 166 SISYRNFWSCTCFLIYIFYT 185 (192)
Q Consensus 166 ~l~~~~~~~~v~~vvD~s~~ 185 (192)
..+.+|++++|+|++++
T Consensus 89 ---~~~~~d~ii~v~d~~~~ 105 (213)
T 3cph_A 89 ---YYRGAMGIILVYDVTDE 105 (213)
T ss_dssp ---HHTTCSEEEEEEETTCH
T ss_pred ---HhccCCEEEEEEECCCH
Confidence 22467899999998765
No 99
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=99.10 E-value=2.9e-10 Score=88.12 Aligned_cols=83 Identities=16% Similarity=0.170 Sum_probs=53.1
Q ss_pred CCCeEEEEecCCCcHHHHHHHHhhccCceeecCCCCceeEE--EEEee-C--CeEEEEECCCCCCCCChHHHHHHHHHHH
Q 029512 91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTI--NFFKL-G--TKLCLVDLPGYGFAYAKEEVKDAWEELV 165 (192)
Q Consensus 91 ~~~~i~lvG~~n~GKStlin~L~~~~~~~~~~~~~g~T~~~--~~~~~-~--~~~~lvDtPG~~~~~~~~~~~~~~~~~~ 165 (192)
...+|+++|.+|+|||||+|+|++... . ....+..+.+. ..... + ..+.+|||||...... .+
T Consensus 7 ~~~ki~v~G~~~~GKSsli~~l~~~~~-~-~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~------~~---- 74 (207)
T 1vg8_A 7 VLLKVIILGDSGVGKTSLMNQYVNKKF-S-NQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQERFQS------LG---- 74 (207)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHSCC-C-SSCCCCCSEEEEEEEEESSSCEEEEEEEEECSSGGGSC------SC----
T ss_pred cceEEEEECcCCCCHHHHHHHHHcCCC-C-CCCCCcccceEEEEEEEECCEEEEEEEEeCCCcHHHHH------hH----
Confidence 346999999999999999999998742 1 22222233332 22222 2 4789999999532100 01
Q ss_pred hhhccCceeEEEEEEecCCce
Q 029512 166 SISYRNFWSCTCFLIYIFYTN 186 (192)
Q Consensus 166 ~l~~~~~~~~v~~vvD~s~~~ 186 (192)
....+.+|++++|+|+++++
T Consensus 75 -~~~~~~~d~~i~v~d~~~~~ 94 (207)
T 1vg8_A 75 -VAFYRGADCCVLVFDVTAPN 94 (207)
T ss_dssp -CGGGTTCSEEEEEEETTCHH
T ss_pred -HHHHhCCcEEEEEEECCCHH
Confidence 12345679999999987653
No 100
>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}
Probab=99.10 E-value=3.1e-10 Score=102.28 Aligned_cols=90 Identities=18% Similarity=0.208 Sum_probs=57.8
Q ss_pred CCCCeEEEEecCCCcHHHHHHHHhhccCce--eecCCCCceeEEEEEee-------------------------C-----
Q 029512 90 PDLPEIAFAGRSNVGKSSMLNALTRQWGVV--RTSDKPGLTQTINFFKL-------------------------G----- 137 (192)
Q Consensus 90 ~~~~~i~lvG~~n~GKStlin~L~~~~~~~--~~~~~~g~T~~~~~~~~-------------------------~----- 137 (192)
...+.|+++|.+|+|||||+|+|++. .+. .++..+++|+....... +
T Consensus 63 ~~~~~V~vvG~~n~GKSTLIN~Llg~-~~~~~~vs~~p~T~~~~~i~~~~~~~i~~g~~l~~~~~~~~~~L~~~g~~~~~ 141 (550)
T 2qpt_A 63 DGKPMVLVAGQYSTGKTSFIQYLLEQ-EVPGSRVGPEPTTDCFVAVMHGETEGTVPGNALVVDPEKPFRKLNPFGNTFLN 141 (550)
T ss_dssp SSCCEEEEEEBTTSCHHHHHHHHHTS-CCSSCCCCSSCCCCSEEEEECCSSSEEECCC------------------CCCT
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCC-ccccCccCCCCccceEEEEEECCcccccCCceeeecCcccHHHHhhhcccccc
Confidence 45689999999999999999999997 333 46666666553221110 0
Q ss_pred ------------CeEEEEECCCCCCCCChHH-----HHHHHHHHHhhhccCceeEEEEEEecCCc
Q 029512 138 ------------TKLCLVDLPGYGFAYAKEE-----VKDAWEELVSISYRNFWSCTCFLIYIFYT 185 (192)
Q Consensus 138 ------------~~~~lvDtPG~~~~~~~~~-----~~~~~~~~~~l~~~~~~~~v~~vvD~s~~ 185 (192)
..+.||||||+........ ....+..+ ...+|++++|+|++..
T Consensus 142 ~~~~~~~~~~ll~~l~lIDTPG~~~~~~~~~~~~~~f~~~~~~~-----l~~aD~il~VvDa~~~ 201 (550)
T 2qpt_A 142 RFMCAQLPNQVLESISIIDTPGILSGAKQRVSRGYDFPAVLRWF-----AERVDLIILLFDAHKL 201 (550)
T ss_dssp TEEEEECCCHHHHHCEEEECCCBCC-------CCSCHHHHHHHH-----HHHCSEEEEEEETTSC
T ss_pred cceEEeccccccCCEEEEECcCCCCcchhHHHHHhhHHHHHHHH-----HHhCCEEEEEEeCCcC
Confidence 3689999999875211100 11122222 2357999999999764
No 101
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.10 E-value=4.1e-10 Score=87.02 Aligned_cols=83 Identities=14% Similarity=0.056 Sum_probs=52.8
Q ss_pred CCCeEEEEecCCCcHHHHHHHHhhccCceee-cCCCCceeEEEEEee--CCeEEEEECCCCCCCCChHHHHHHHHHHHhh
Q 029512 91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRT-SDKPGLTQTINFFKL--GTKLCLVDLPGYGFAYAKEEVKDAWEELVSI 167 (192)
Q Consensus 91 ~~~~i~lvG~~n~GKStlin~L~~~~~~~~~-~~~~g~T~~~~~~~~--~~~~~lvDtPG~~~~~~~~~~~~~~~~~~~l 167 (192)
...+|+++|.+|||||||+|+|++.. .... ....+.+........ ...+.+|||||... ...+..+.
T Consensus 27 ~~~ki~v~G~~~vGKSsli~~l~~~~-~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~-------~~~~~~~~-- 96 (196)
T 2atv_A 27 AEVKLAIFGRAGVGKSALVVRFLTKR-FIWEYDPTLESTYRHQATIDDEVVSMEILDTAGQED-------TIQREGHM-- 96 (196)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHSC-CCSCCCTTCCEEEEEEEEETTEEEEEEEEECCCCCC-------CHHHHHHH--
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCC-CCcccCCCCCceEEEEEEECCEEEEEEEEECCCCCc-------ccchhhhh--
Confidence 35699999999999999999999873 2211 122222221112112 35689999999765 11222222
Q ss_pred hccCceeEEEEEEecCCce
Q 029512 168 SYRNFWSCTCFLIYIFYTN 186 (192)
Q Consensus 168 ~~~~~~~~v~~vvD~s~~~ 186 (192)
+.+|++++|+|+++++
T Consensus 97 ---~~~d~iilv~D~~~~~ 112 (196)
T 2atv_A 97 ---RWGEGFVLVYDITDRG 112 (196)
T ss_dssp ---HHCSEEEEEEETTCHH
T ss_pred ---ccCCEEEEEEECcCHH
Confidence 3468999999998753
No 102
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=99.09 E-value=3.3e-10 Score=85.93 Aligned_cols=82 Identities=13% Similarity=0.070 Sum_probs=52.8
Q ss_pred CCCeEEEEecCCCcHHHHHHHHhhccCceeecCCCCceeEE---EEEeeC--CeEEEEECCCCCCCCChHHHHHHHHHHH
Q 029512 91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTI---NFFKLG--TKLCLVDLPGYGFAYAKEEVKDAWEELV 165 (192)
Q Consensus 91 ~~~~i~lvG~~n~GKStlin~L~~~~~~~~~~~~~g~T~~~---~~~~~~--~~~~lvDtPG~~~~~~~~~~~~~~~~~~ 165 (192)
...+|+++|.+|+|||||+|+|++.. ......+++... .....+ ..+.+|||||.... ...+..+.
T Consensus 17 ~~~ki~v~G~~~~GKSsli~~l~~~~---~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~------~~~~~~~~ 87 (187)
T 2a9k_A 17 ALHKVIMVGSGGVGKSALTLQFMYDE---FVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDY------AAIRDNYF 87 (187)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHSC---CCCSCCTTCCEEEEEEEEETTEEEEEEEEECCCTTCC------HHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHhhCC---CCCcCCCccceEEEEEEEECCEEEEEEEEECCCCccc------HHHHHHHh
Confidence 34699999999999999999999873 223333333222 122222 47899999996431 12232322
Q ss_pred hhhccCceeEEEEEEecCCce
Q 029512 166 SISYRNFWSCTCFLIYIFYTN 186 (192)
Q Consensus 166 ~l~~~~~~~~v~~vvD~s~~~ 186 (192)
+.+|.+++|+|+++++
T Consensus 88 -----~~~d~~i~v~d~~~~~ 103 (187)
T 2a9k_A 88 -----RSGEGFLCVFSITEME 103 (187)
T ss_dssp -----HHCSEEEEEEETTCHH
T ss_pred -----ccCCEEEEEEECcCHH
Confidence 2578899999988653
No 103
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.09 E-value=3.3e-10 Score=87.15 Aligned_cols=84 Identities=12% Similarity=-0.086 Sum_probs=51.8
Q ss_pred CCCeEEEEecCCCcHHHHHHHHhhccCceeecCCCCceeEEEEEee--CCeEEEEECCCCCCCCChHHHHHHHHHHHhhh
Q 029512 91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKL--GTKLCLVDLPGYGFAYAKEEVKDAWEELVSIS 168 (192)
Q Consensus 91 ~~~~i~lvG~~n~GKStlin~L~~~~~~~~~~~~~g~T~~~~~~~~--~~~~~lvDtPG~~~~~~~~~~~~~~~~~~~l~ 168 (192)
...+|+++|.+|||||||+|+|++........+..+.+........ ...+.+|||||.... ...+..+.
T Consensus 7 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~------~~~~~~~~--- 77 (199)
T 2gf0_A 7 NDYRVVVFGAGGVGKSSLVLRFVKGTFRDTYIPTIEDTYRQVISCDKSVCTLQITDTTGSHQF------PAMQRLSI--- 77 (199)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHHSCCCCTTSCCCCEEEEEEEEETTEEEEEEEEECCGGGSC------HHHHHHHH---
T ss_pred CeeEEEEECCCCCcHHHHHHHHHcCCCCCcccCccccceeEEEEECCEEEEEEEEeCCChHHh------HHHHHHhh---
Confidence 4579999999999999999999986311111122222222122111 347899999995321 12222222
Q ss_pred ccCceeEEEEEEecCCc
Q 029512 169 YRNFWSCTCFLIYIFYT 185 (192)
Q Consensus 169 ~~~~~~~v~~vvD~s~~ 185 (192)
..+|++++|+|++++
T Consensus 78 --~~~d~~i~v~d~~~~ 92 (199)
T 2gf0_A 78 --SKGHAFILVFSVTSK 92 (199)
T ss_dssp --HHCSEEEEEEETTCH
T ss_pred --ccCCEEEEEEECcCH
Confidence 346899999998764
No 104
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=99.09 E-value=2.6e-10 Score=88.26 Aligned_cols=84 Identities=15% Similarity=0.109 Sum_probs=52.2
Q ss_pred CCCCeEEEEecCCCcHHHHHHHHhhccCceeecCCCCceeEEEEEeeCCeEEEEECCCCCCCCChHHHHHHHHHHHhhhc
Q 029512 90 PDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVSISY 169 (192)
Q Consensus 90 ~~~~~i~lvG~~n~GKStlin~L~~~~~~~~~~~~~g~T~~~~~~~~~~~~~lvDtPG~~~~~~~~~~~~~~~~~~~l~~ 169 (192)
....+|+++|.+|||||||+|+|++.. .....++.+.+.. .....+..+.+|||||..... ..+..+
T Consensus 27 ~~~~ki~v~G~~~vGKSsLi~~l~~~~-~~~~~~t~~~~~~-~~~~~~~~~~i~Dt~G~~~~~------~~~~~~----- 93 (192)
T 2b6h_A 27 KKQMRILMVGLDAAGKTTILYKLKLGE-IVTTIPTIGFNVE-TVEYKNICFTVWDVGGQDKIR------PLWRHY----- 93 (192)
T ss_dssp TSCEEEEEEESTTSSHHHHHHHHCSSC-CEEEEEETTEEEE-EEEETTEEEEEEECC-----C------TTHHHH-----
T ss_pred CCccEEEEECCCCCCHHHHHHHHHhCC-ccccCCcCceeEE-EEEECCEEEEEEECCCCHhHH------HHHHHH-----
Confidence 345799999999999999999999763 3322222232211 122246789999999964311 122222
Q ss_pred cCceeEEEEEEecCCce
Q 029512 170 RNFWSCTCFLIYIFYTN 186 (192)
Q Consensus 170 ~~~~~~v~~vvD~s~~~ 186 (192)
.+.+|++++|+|+++++
T Consensus 94 ~~~~d~iilv~D~~~~~ 110 (192)
T 2b6h_A 94 FQNTQGLIFVVDSNDRE 110 (192)
T ss_dssp HHTCCEEEEEEETTCGG
T ss_pred hccCCEEEEEEECCCHH
Confidence 23679999999998763
No 105
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.09 E-value=1.1e-10 Score=89.96 Aligned_cols=84 Identities=17% Similarity=0.068 Sum_probs=56.0
Q ss_pred CCCeEEEEecCCCcHHHHHHHHhhccCceeecCCCCceeEEEEEe---eCCeEEEEECCCCCCCCChHHHHHHHHHHHhh
Q 029512 91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFK---LGTKLCLVDLPGYGFAYAKEEVKDAWEELVSI 167 (192)
Q Consensus 91 ~~~~i~lvG~~n~GKStlin~L~~~~~~~~~~~~~g~T~~~~~~~---~~~~~~lvDtPG~~~~~~~~~~~~~~~~~~~l 167 (192)
...+|+++|.+|||||||+|+|++...........+.+....... .+..+.+|||||. +.....+..+
T Consensus 22 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~------~~~~~~~~~~--- 92 (191)
T 3dz8_A 22 YMFKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYRHEKRVKLQIWDTAGQ------ERYRTITTAY--- 92 (191)
T ss_dssp ECEEEEEEESTTSSHHHHHHHHHHHTTCCCEEEEETTTEEEEEEEETTTTEEEEEECHHHH------HHCHHHHHHH---
T ss_pred eeeEEEEECCCCcCHHHHHHHHhcCCCCcccCCCeeeEEEEEEEEECCEEEEEEEEeCCCh------HHHHHHHHHH---
Confidence 456999999999999999999998642222223334444444333 2457999999992 2222333333
Q ss_pred hccCceeEEEEEEecCCc
Q 029512 168 SYRNFWSCTCFLIYIFYT 185 (192)
Q Consensus 168 ~~~~~~~~v~~vvD~s~~ 185 (192)
.+.+|++++|+|++++
T Consensus 93 --~~~~d~~i~v~d~~~~ 108 (191)
T 3dz8_A 93 --YRGAMGFILMYDITNE 108 (191)
T ss_dssp --HTTCCEEEEEEETTCH
T ss_pred --HccCCEEEEEEECcCH
Confidence 3468999999998764
No 106
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=99.09 E-value=2.7e-10 Score=86.63 Aligned_cols=80 Identities=16% Similarity=0.062 Sum_probs=49.8
Q ss_pred CCeEEEEecCCCcHHHHHHHHhhccCceeecCCCCceeEEE--EE-eeC--CeEEEEECCCCCCCCChHHHHHHHHHHHh
Q 029512 92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTIN--FF-KLG--TKLCLVDLPGYGFAYAKEEVKDAWEELVS 166 (192)
Q Consensus 92 ~~~i~lvG~~n~GKStlin~L~~~~~~~~~~~~~g~T~~~~--~~-~~~--~~~~lvDtPG~~~~~~~~~~~~~~~~~~~ 166 (192)
..+|+++|.+|||||||+|+|++.. .....++++.+.. .. ..+ ..+.+|||||...... .+..+.
T Consensus 4 ~~ki~v~G~~~~GKSsli~~l~~~~---~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~------~~~~~~- 73 (189)
T 4dsu_A 4 EYKLVVVGADGVGKSALTIQLIQNH---FVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSA------MRDQYM- 73 (189)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHSS---CCCCCCTTCCEEEEEEEEETTEEEEEEEEECCCC---CT------THHHHH-
T ss_pred EEEEEEECCCCCCHHHHHHHHHhCC---CCCCCCCCchheEEEEEEECCcEEEEEEEECCCcHHHHH------HHHHHH-
Confidence 3589999999999999999999873 2334444443322 12 223 3477899999543111 122221
Q ss_pred hhccCceeEEEEEEecCCc
Q 029512 167 ISYRNFWSCTCFLIYIFYT 185 (192)
Q Consensus 167 l~~~~~~~~v~~vvD~s~~ 185 (192)
+.+|++++|+|++++
T Consensus 74 ----~~~~~~i~v~d~~~~ 88 (189)
T 4dsu_A 74 ----RTGEGFLCVFAINNT 88 (189)
T ss_dssp ----HHCSEEEEEEETTCH
T ss_pred ----hcCCEEEEEEECCCH
Confidence 246888888888764
No 107
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=99.09 E-value=8.6e-10 Score=86.20 Aligned_cols=80 Identities=19% Similarity=0.340 Sum_probs=53.6
Q ss_pred CCCeEEEEecCCCcHHHHHHHHhhccCceeecCCCCceeEEEEEee----CCeEEEEECCCCCCCCChHHHHH-HHHHHH
Q 029512 91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKL----GTKLCLVDLPGYGFAYAKEEVKD-AWEELV 165 (192)
Q Consensus 91 ~~~~i~lvG~~n~GKStlin~L~~~~~~~~~~~~~g~T~~~~~~~~----~~~~~lvDtPG~~~~~~~~~~~~-~~~~~~ 165 (192)
..++|+++|.+|+|||||+|+|++.. .....+.++.+...... +..+.+|||||.. .... .+..+
T Consensus 6 ~~~ki~vvG~~~~GKTsli~~l~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~------~~~~~~~~~~- 75 (214)
T 2fh5_B 6 SQRAVLFVGLCDSGKTLLFVRLLTGQ---YRDTQTSITDSSAIYKVNNNRGNSLTLIDLPGHE------SLRFQLLDRF- 75 (214)
T ss_dssp --CEEEEECSTTSSHHHHHHHHHHSC---CCCBCCCCSCEEEEEECSSTTCCEEEEEECCCCH------HHHHHHHHHH-
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC---cccccCCcceeeEEEEecCCCccEEEEEECCCCh------hHHHHHHHHH-
Confidence 45799999999999999999999873 22333333433333332 4579999999953 2222 23332
Q ss_pred hhhccCceeEEEEEEecCC
Q 029512 166 SISYRNFWSCTCFLIYIFY 184 (192)
Q Consensus 166 ~l~~~~~~~~v~~vvD~s~ 184 (192)
.+.++++++|+|++.
T Consensus 76 ----~~~~~~~i~v~d~~~ 90 (214)
T 2fh5_B 76 ----KSSARAVVFVVDSAA 90 (214)
T ss_dssp ----GGGEEEEEEEEETTT
T ss_pred ----HhhCCEEEEEEECCC
Confidence 456899999999876
No 108
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=99.08 E-value=2.9e-10 Score=85.79 Aligned_cols=84 Identities=15% Similarity=0.098 Sum_probs=53.5
Q ss_pred CCeEEEEecCCCcHHHHHHHHhhccCceeecCCCCceeEEEEEee-C---CeEEEEECCCCCCCCChHHHHHHHHHHHhh
Q 029512 92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKL-G---TKLCLVDLPGYGFAYAKEEVKDAWEELVSI 167 (192)
Q Consensus 92 ~~~i~lvG~~n~GKStlin~L~~~~~~~~~~~~~g~T~~~~~~~~-~---~~~~lvDtPG~~~~~~~~~~~~~~~~~~~l 167 (192)
..+|+++|.+|||||||+|+|++........+..+.......... + ..+.+|||||...... .+..+
T Consensus 6 ~~ki~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~------~~~~~--- 76 (178)
T 2hxs_A 6 QLKIVVLGDGASGKTSLTTCFAQETFGKQYKQTIGLDFFLRRITLPGNLNVTLQIWDIGGQTIGGK------MLDKY--- 76 (178)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHGGGTTHHHHHTTTSSEEEEEEEETTTEEEEEEEEECTTCCTTCT------THHHH---
T ss_pred eEEEEEECcCCCCHHHHHHHHHhCcCCCCCCCceeEEEEEEEEEeCCCCEEEEEEEECCCCccccc------hhhHH---
Confidence 468999999999999999999986321112223332222222222 2 6799999999643111 12222
Q ss_pred hccCceeEEEEEEecCCce
Q 029512 168 SYRNFWSCTCFLIYIFYTN 186 (192)
Q Consensus 168 ~~~~~~~~v~~vvD~s~~~ 186 (192)
.+.+|++++|+|+++++
T Consensus 77 --~~~~d~~i~v~d~~~~~ 93 (178)
T 2hxs_A 77 --IYGAQGVLLVYDITNYQ 93 (178)
T ss_dssp --HTTCSEEEEEEETTCHH
T ss_pred --HhhCCEEEEEEECCCHH
Confidence 24679999999998754
No 109
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.08 E-value=3.4e-10 Score=85.56 Aligned_cols=83 Identities=16% Similarity=0.151 Sum_probs=52.1
Q ss_pred CCeEEEEecCCCcHHHHHHHHhhccCceeecCCCCceeEEE--EEee-C--CeEEEEECCCCCCCCChHHHHHHHHHHHh
Q 029512 92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTIN--FFKL-G--TKLCLVDLPGYGFAYAKEEVKDAWEELVS 166 (192)
Q Consensus 92 ~~~i~lvG~~n~GKStlin~L~~~~~~~~~~~~~g~T~~~~--~~~~-~--~~~~lvDtPG~~~~~~~~~~~~~~~~~~~ 166 (192)
..+|+++|.+|+|||||+|+|++.. .......+.++.+.. .... + ..+.+|||||... ....+
T Consensus 10 ~~~i~v~G~~~~GKssli~~l~~~~-~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~------~~~~~----- 77 (180)
T 2g6b_A 10 AFKVMLVGDSGVGKTCLLVRFKDGA-FLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDTAGQER------FRSVT----- 77 (180)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSC-CCCCCCCCCCSCEEEEEEEEETTEEEEEEEEECCCC------------------
T ss_pred ceEEEEECcCCCCHHHHHHHHHhCC-CCCCCcCCceeeEEEEEEEEECCEEEEEEEEeCCCcHH------HHHHH-----
Confidence 4699999999999999999999873 222222333333322 2222 2 3789999999532 11111
Q ss_pred hhccCceeEEEEEEecCCce
Q 029512 167 ISYRNFWSCTCFLIYIFYTN 186 (192)
Q Consensus 167 l~~~~~~~~v~~vvD~s~~~ 186 (192)
....+.+|++++|+|+++++
T Consensus 78 ~~~~~~~d~ii~v~d~~~~~ 97 (180)
T 2g6b_A 78 HAYYRDAHALLLLYDVTNKA 97 (180)
T ss_dssp -CCGGGCSEEEEEEETTCHH
T ss_pred HHHccCCCEEEEEEECCCHH
Confidence 22345689999999988753
No 110
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=99.07 E-value=3.8e-10 Score=84.04 Aligned_cols=79 Identities=13% Similarity=0.066 Sum_probs=49.8
Q ss_pred CeEEEEecCCCcHHHHHHHHhhccCceeecCCCCceeEE--EEEee---CCeEEEEECCCCCCCCChHHHHHHHHHHHhh
Q 029512 93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTI--NFFKL---GTKLCLVDLPGYGFAYAKEEVKDAWEELVSI 167 (192)
Q Consensus 93 ~~i~lvG~~n~GKStlin~L~~~~~~~~~~~~~g~T~~~--~~~~~---~~~~~lvDtPG~~~~~~~~~~~~~~~~~~~l 167 (192)
.+|+++|.+|+|||||+|+|++.. . ......++... ..... ...+.+|||||...... .+..+.
T Consensus 4 ~ki~v~G~~~~GKssli~~l~~~~-~--~~~~~~t~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~------~~~~~~-- 72 (167)
T 1c1y_A 4 YKLVVLGSGGVGKSALTVQFVQGI-F--VEKYDPTIEDSYRKQVEVDCQQCMLEILDTAGTEQFTA------MRDLYM-- 72 (167)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHCC-C--CCSCCCCSEEEEEEEEESSSCEEEEEEEEECSSCSSTT------HHHHHH--
T ss_pred eEEEEECCCCCCHHHHHHHHHcCC-C--CCCCCCCccceEEEEEEECCEEEEEEEEECCChHHHHH------HHHHHh--
Confidence 589999999999999999999863 2 22222222221 11122 34689999999653211 222222
Q ss_pred hccCceeEEEEEEecCCc
Q 029512 168 SYRNFWSCTCFLIYIFYT 185 (192)
Q Consensus 168 ~~~~~~~~v~~vvD~s~~ 185 (192)
+.+|++++|+|++++
T Consensus 73 ---~~~d~~i~v~d~~~~ 87 (167)
T 1c1y_A 73 ---KNGQGFALVYSITAQ 87 (167)
T ss_dssp ---HHCSEEEEEEETTCH
T ss_pred ---ccCCEEEEEEECCCH
Confidence 246889999998765
No 111
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.07 E-value=6.7e-10 Score=87.02 Aligned_cols=82 Identities=18% Similarity=0.225 Sum_probs=53.2
Q ss_pred CCeEEEEecCCCcHHHHHHHHhhccCceeecCCCCceeEE--EEEee-C--CeEEEEECCCCCCCCChHHHHHHHHHHHh
Q 029512 92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTI--NFFKL-G--TKLCLVDLPGYGFAYAKEEVKDAWEELVS 166 (192)
Q Consensus 92 ~~~i~lvG~~n~GKStlin~L~~~~~~~~~~~~~g~T~~~--~~~~~-~--~~~~lvDtPG~~~~~~~~~~~~~~~~~~~ 166 (192)
..+|+++|.+|||||||+|+|++.. . .....+..+.+. ..... + ..+.+|||||... ....+
T Consensus 26 ~~ki~lvG~~~vGKSsLi~~l~~~~-~-~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~------~~~~~----- 92 (201)
T 2ew1_A 26 LFKIVLIGNAGVGKTCLVRRFTQGL-F-PPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQER------FRSIT----- 92 (201)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSS-C-CTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGG------GHHHH-----
T ss_pred ceEEEEECcCCCCHHHHHHHHHhCC-C-CCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHH------HHHHH-----
Confidence 4699999999999999999999863 1 122222222332 22222 2 4789999999421 11111
Q ss_pred hhccCceeEEEEEEecCCce
Q 029512 167 ISYRNFWSCTCFLIYIFYTN 186 (192)
Q Consensus 167 l~~~~~~~~v~~vvD~s~~~ 186 (192)
....+.+|++++|+|+++++
T Consensus 93 ~~~~~~~d~~i~v~D~~~~~ 112 (201)
T 2ew1_A 93 QSYYRSANALILTYDITCEE 112 (201)
T ss_dssp GGGSTTCSEEEEEEETTCHH
T ss_pred HHHHhcCCEEEEEEECCCHH
Confidence 23456789999999987653
No 112
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=99.07 E-value=5.5e-10 Score=87.05 Aligned_cols=84 Identities=17% Similarity=0.182 Sum_probs=50.9
Q ss_pred CCeEEEEecCCCcHHHHHHHHhhccCceeecCCCCceeEEEEEee-C--CeEEEEECCCCCCCCChHHHHHHHHHHHhhh
Q 029512 92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKL-G--TKLCLVDLPGYGFAYAKEEVKDAWEELVSIS 168 (192)
Q Consensus 92 ~~~i~lvG~~n~GKStlin~L~~~~~~~~~~~~~g~T~~~~~~~~-~--~~~~lvDtPG~~~~~~~~~~~~~~~~~~~l~ 168 (192)
..+|+++|.+|||||||+|+|++...........+.......... + ..+.+|||||... ....+..+
T Consensus 29 ~~ki~vvG~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~------~~~~~~~~---- 98 (201)
T 2hup_A 29 LFKLVLVGDASVGKTCVVQRFKTGAFSERQGSTIGVDFTMKTLEIQGKRVKLQIWDTAGQER------FRTITQSY---- 98 (201)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHSCC----------CEEEEEEEETTEEEEEEEECCTTCGG------GHHHHHHH----
T ss_pred ceEEEEECcCCCCHHHHHHHHhhCCCCCCCCCCcceEEEEEEEEECCEEEEEEEEECCCcHh------HHHHHHHH----
Confidence 468999999999999999999986311111122122121222222 2 4799999999531 12233333
Q ss_pred ccCceeEEEEEEecCCce
Q 029512 169 YRNFWSCTCFLIYIFYTN 186 (192)
Q Consensus 169 ~~~~~~~v~~vvD~s~~~ 186 (192)
.+.+|++++|+|+++++
T Consensus 99 -~~~~d~iilv~D~~~~~ 115 (201)
T 2hup_A 99 -YRSANGAILAYDITKRS 115 (201)
T ss_dssp -HTTCSEEEEEEETTBHH
T ss_pred -HhhCCEEEEEEECCCHH
Confidence 24689999999987653
No 113
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=99.06 E-value=3.5e-10 Score=87.07 Aligned_cols=84 Identities=18% Similarity=0.096 Sum_probs=52.2
Q ss_pred CCeEEEEecCCCcHHHHHHHHhhccCceeecCCCCceeEEEEEeeC---CeEEEEECCCCCCCCChHHHHHHHHHHHhhh
Q 029512 92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLG---TKLCLVDLPGYGFAYAKEEVKDAWEELVSIS 168 (192)
Q Consensus 92 ~~~i~lvG~~n~GKStlin~L~~~~~~~~~~~~~g~T~~~~~~~~~---~~~~lvDtPG~~~~~~~~~~~~~~~~~~~l~ 168 (192)
..+|+++|.+|||||||+|+|++...........+.+........+ ..+.+|||||...... .+..
T Consensus 21 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~------~~~~----- 89 (191)
T 2a5j_A 21 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQESFRS------ITRS----- 89 (191)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHSCCCC-----CCSSEEEEEEEETTEEEEEEEECCTTGGGTSC------CCHH-----
T ss_pred ceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEECCCchhhhh------hHHH-----
Confidence 4589999999999999999999873211122233444433333332 4789999999532111 1111
Q ss_pred ccCceeEEEEEEecCCce
Q 029512 169 YRNFWSCTCFLIYIFYTN 186 (192)
Q Consensus 169 ~~~~~~~v~~vvD~s~~~ 186 (192)
..+.+|++++|+|+++++
T Consensus 90 ~~~~~d~ii~v~d~~~~~ 107 (191)
T 2a5j_A 90 YYRGAAGALLVYDITRRE 107 (191)
T ss_dssp HHTTCSEEEEEEETTCHH
T ss_pred HhccCCEEEEEEECCCHH
Confidence 124678999999987653
No 114
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=99.06 E-value=6.4e-10 Score=84.34 Aligned_cols=84 Identities=14% Similarity=-0.060 Sum_probs=51.5
Q ss_pred CCeEEEEecCCCcHHHHHHHHhhccCceeecCCCCceeEEEEEee--CCeEEEEECCCCCCCCChHHHHHHHHHHHhhhc
Q 029512 92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKL--GTKLCLVDLPGYGFAYAKEEVKDAWEELVSISY 169 (192)
Q Consensus 92 ~~~i~lvG~~n~GKStlin~L~~~~~~~~~~~~~g~T~~~~~~~~--~~~~~lvDtPG~~~~~~~~~~~~~~~~~~~l~~ 169 (192)
..+|+++|.+|+|||||+|+|++...........+.+........ ...+.+|||||..... .+. ...
T Consensus 5 ~~~i~~~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~----------~~~-~~~ 73 (186)
T 1mh1_A 5 AIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYD----------RLR-PLS 73 (186)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSSCCSSCCCCSCCEEEEEEEETTEEEEEEEECCCCSGGGT----------TTG-GGG
T ss_pred EEEEEEECCCCCCHHHHHHHHHcCCCCCCcCCcccceeEEEEEECCEEEEEEEEECCCCHhHH----------HHH-HHh
Confidence 458999999999999999999976311111122222222122222 3457799999963210 010 123
Q ss_pred cCceeEEEEEEecCCce
Q 029512 170 RNFWSCTCFLIYIFYTN 186 (192)
Q Consensus 170 ~~~~~~v~~vvD~s~~~ 186 (192)
.+.+|++++|+|++++.
T Consensus 74 ~~~~d~~i~v~d~~~~~ 90 (186)
T 1mh1_A 74 YPQTDVSLICFSLVSPA 90 (186)
T ss_dssp CTTCSEEEEEEETTCHH
T ss_pred ccCCcEEEEEEECCChh
Confidence 46789999999987753
No 115
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=99.05 E-value=3e-10 Score=88.42 Aligned_cols=84 Identities=18% Similarity=0.161 Sum_probs=49.1
Q ss_pred CCeEEEEecCCCcHHHHHHHHhhccCceeecCCCCceeEEEEEee-C--CeEEEEECCCCCCCCChHHHHHHHHHHHhhh
Q 029512 92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKL-G--TKLCLVDLPGYGFAYAKEEVKDAWEELVSIS 168 (192)
Q Consensus 92 ~~~i~lvG~~n~GKStlin~L~~~~~~~~~~~~~g~T~~~~~~~~-~--~~~~lvDtPG~~~~~~~~~~~~~~~~~~~l~ 168 (192)
..+|+++|.+|||||||+|+|++...........+.+........ + ..+.+|||||... ....+. .
T Consensus 25 ~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~------~~~~~~-----~ 93 (200)
T 2o52_A 25 LFKFLVIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVGGKTVKLQIWDTAGQER------FRSVTR-----S 93 (200)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHC------------CCEEEEEEEETTEEEEEEEECCTTHHH------HSCCCH-----H
T ss_pred ceEEEEECcCCCCHHHHHHHHHhCCCCccCCCcccceeEEEEEEECCeeeEEEEEcCCCcHh------HHHHHH-----H
Confidence 469999999999999999999986311111122222222223322 2 5799999999321 111111 1
Q ss_pred ccCceeEEEEEEecCCce
Q 029512 169 YRNFWSCTCFLIYIFYTN 186 (192)
Q Consensus 169 ~~~~~~~v~~vvD~s~~~ 186 (192)
..+.+|++++|+|+++++
T Consensus 94 ~~~~~d~~i~v~d~~~~~ 111 (200)
T 2o52_A 94 YYRGAAGALLVYDITSRE 111 (200)
T ss_dssp HHTTCSEEEEEEETTCHH
T ss_pred HhccCCEEEEEEECcCHH
Confidence 234679999999987653
No 116
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=99.05 E-value=1.9e-10 Score=90.31 Aligned_cols=84 Identities=14% Similarity=0.006 Sum_probs=56.3
Q ss_pred CCCeEEEEecCCCcHHHHHHHHhhccCceeecCCCCceeEEEEEeeC----CeEEEEECCCCCCCCChHHHHHHHHHHHh
Q 029512 91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLG----TKLCLVDLPGYGFAYAKEEVKDAWEELVS 166 (192)
Q Consensus 91 ~~~~i~lvG~~n~GKStlin~L~~~~~~~~~~~~~g~T~~~~~~~~~----~~~~lvDtPG~~~~~~~~~~~~~~~~~~~ 166 (192)
...+|+++|.+|||||||+|+|++...........+.+......... ..+.+|||||...... .+..+
T Consensus 10 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~------~~~~~-- 81 (218)
T 4djt_A 10 LTYKICLIGDGGVGKTTYINRVLDGRFEKNYNATVGAVNHPVTFLDDQGNVIKFNVWDTAGQEKKAV------LKDVY-- 81 (218)
T ss_dssp CEEEEEEECCTTSSHHHHHCBCTTCSTTCEEETTTTEEEEEEEEEBTTSCEEEEEEEEECSGGGTSC------CCHHH--
T ss_pred CccEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeeEEEEEEeCCCcEEEEEEEecCCchhhch------HHHHH--
Confidence 34699999999999999999999764334445555655554443332 4699999999643111 11111
Q ss_pred hhccCceeEEEEEEecCCc
Q 029512 167 ISYRNFWSCTCFLIYIFYT 185 (192)
Q Consensus 167 l~~~~~~~~v~~vvD~s~~ 185 (192)
...+|++++|+|++++
T Consensus 82 ---~~~~d~~i~v~d~~~~ 97 (218)
T 4djt_A 82 ---YIGASGAILFFDVTSR 97 (218)
T ss_dssp ---HTTCSEEEEEEETTCH
T ss_pred ---hhcCCEEEEEEeCCCH
Confidence 2457889999998765
No 117
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.04 E-value=1.1e-09 Score=85.58 Aligned_cols=84 Identities=11% Similarity=-0.071 Sum_probs=50.7
Q ss_pred CCeEEEEecCCCcHHHHHHHHhhccCceeecCCCCceeEEEEEeeC--CeEEEEECCCCCCCCChHHHHHHHHHHHhhhc
Q 029512 92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLG--TKLCLVDLPGYGFAYAKEEVKDAWEELVSISY 169 (192)
Q Consensus 92 ~~~i~lvG~~n~GKStlin~L~~~~~~~~~~~~~g~T~~~~~~~~~--~~~~lvDtPG~~~~~~~~~~~~~~~~~~~l~~ 169 (192)
..+|+++|.+|||||||+|+|++........+..+.+........+ ..+.+|||||...... .+ ...
T Consensus 25 ~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~------~~-----~~~ 93 (207)
T 2fv8_A 25 RKKLVVVGDGACGKTCLLIVFSKDEFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDYDR------LR-----PLS 93 (207)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHSSCC-------CCEEEEEEEETTEEEEEEEEECTTCTTCTT------TG-----GGG
T ss_pred CcEEEEECcCCCCHHHHHHHHhcCCCCCcCCCcccceEEEEEEECCEEEEEEEEECCCcHHHHH------HH-----Hhh
Confidence 3589999999999999999999873211111222222222222222 4689999999643111 01 123
Q ss_pred cCceeEEEEEEecCCce
Q 029512 170 RNFWSCTCFLIYIFYTN 186 (192)
Q Consensus 170 ~~~~~~v~~vvD~s~~~ 186 (192)
.+.+|++++|+|++.++
T Consensus 94 ~~~~d~~i~v~d~~~~~ 110 (207)
T 2fv8_A 94 YPDTDVILMCFSVDSPD 110 (207)
T ss_dssp CTTCCEEEEEEETTCHH
T ss_pred cCCCCEEEEEEECCCHH
Confidence 45689999999987653
No 118
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=99.04 E-value=4.9e-10 Score=87.01 Aligned_cols=82 Identities=13% Similarity=0.014 Sum_probs=51.4
Q ss_pred CCCCeEEEEecCCCcHHHHHHHHhhccCceeecCCCCceeEE--EEEe---eCCeEEEEECCCCCCCCChHHHHHHHHHH
Q 029512 90 PDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTI--NFFK---LGTKLCLVDLPGYGFAYAKEEVKDAWEEL 164 (192)
Q Consensus 90 ~~~~~i~lvG~~n~GKStlin~L~~~~~~~~~~~~~g~T~~~--~~~~---~~~~~~lvDtPG~~~~~~~~~~~~~~~~~ 164 (192)
....+|+++|.+|||||||+|+|++.. .. .....++... .... ....+.+|||||....... +
T Consensus 22 ~~~~ki~vvG~~~~GKSsli~~l~~~~-~~--~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~------~--- 89 (201)
T 3oes_A 22 VRYRKVVILGYRCVGKTSLAHQFVEGE-FS--EGYDPTVENTYSKIVTLGKDEFHLHLVDTAGQDEYSIL------P--- 89 (201)
T ss_dssp -CEEEEEEEESTTSSHHHHHHHHHHSC-CC--SCCCCCSEEEEEEEEC----CEEEEEEEECCCCTTCCC------C---
T ss_pred CCcEEEEEECCCCcCHHHHHHHHHhCC-CC--CCCCCccceEEEEEEEECCEEEEEEEEECCCccchHHH------H---
Confidence 345799999999999999999999873 22 2222222221 1111 2466899999996431110 1
Q ss_pred HhhhccCceeEEEEEEecCCc
Q 029512 165 VSISYRNFWSCTCFLIYIFYT 185 (192)
Q Consensus 165 ~~l~~~~~~~~v~~vvD~s~~ 185 (192)
....+.+|++++|+|++++
T Consensus 90 --~~~~~~~d~~i~v~d~~~~ 108 (201)
T 3oes_A 90 --YSFIIGVHGYVLVYSVTSL 108 (201)
T ss_dssp --GGGTTTCCEEEEEEETTCH
T ss_pred --HHHHhcCCEEEEEEeCCCH
Confidence 1234567888888888754
No 119
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=99.04 E-value=7.1e-10 Score=87.69 Aligned_cols=83 Identities=22% Similarity=0.175 Sum_probs=50.3
Q ss_pred CCeEEEEecCCCcHHHHHHHHhhccCceeecCCCCceeEEEEEee-C--CeEEEEECCCCCCCCChHHHHHHHHHHHhhh
Q 029512 92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKL-G--TKLCLVDLPGYGFAYAKEEVKDAWEELVSIS 168 (192)
Q Consensus 92 ~~~i~lvG~~n~GKStlin~L~~~~~~~~~~~~~g~T~~~~~~~~-~--~~~~lvDtPG~~~~~~~~~~~~~~~~~~~l~ 168 (192)
..+|+++|.+|||||||+|+|++...........+.+........ + ..+.+|||||...... .+ ..
T Consensus 13 ~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~------~~-----~~ 81 (223)
T 3cpj_B 13 LFKIVLIGDSGVGKSNLLSRFTKNEFNMDSKSTIGVEFATRTLEIEGKRIKAQIWDTAGQERYRA------IT-----SA 81 (223)
T ss_dssp EEEEEEESCTTSSHHHHHHHHHHCCCCC------CCSEEEEEEEETTEEEEEEEECCTTTTTTTC------CC-----GG
T ss_pred eeEEEEECcCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEECCCccchhh------hH-----HH
Confidence 469999999999999999999987321122223333333332333 2 4789999999543110 01 12
Q ss_pred ccCceeEEEEEEecCCc
Q 029512 169 YRNFWSCTCFLIYIFYT 185 (192)
Q Consensus 169 ~~~~~~~v~~vvD~s~~ 185 (192)
..+.+|++++|+|++++
T Consensus 82 ~~~~~d~vilV~D~~~~ 98 (223)
T 3cpj_B 82 YYRGAVGALIVYDISKS 98 (223)
T ss_dssp GTTTCCEEEEEEC-CCH
T ss_pred HhccCCEEEEEEeCCCH
Confidence 34567888999988765
No 120
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=99.04 E-value=9.4e-10 Score=85.07 Aligned_cols=82 Identities=13% Similarity=-0.010 Sum_probs=50.1
Q ss_pred CCCeEEEEecCCCcHHHHHHHHhhccCceeecCCCCceeEE---EEEeeC--CeEEEEECCCCCCCCChHHHHHHHHHHH
Q 029512 91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTI---NFFKLG--TKLCLVDLPGYGFAYAKEEVKDAWEELV 165 (192)
Q Consensus 91 ~~~~i~lvG~~n~GKStlin~L~~~~~~~~~~~~~g~T~~~---~~~~~~--~~~~lvDtPG~~~~~~~~~~~~~~~~~~ 165 (192)
...+|+++|.+|||||||+|++++.. ......+++.+. .....+ ..+.+|||||...... .+
T Consensus 19 ~~~ki~~~G~~~~GKssl~~~l~~~~---~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~------~~---- 85 (201)
T 2q3h_A 19 RGVKCVLVGDGAVGKTSLVVSYTTNG---YPTEYIPTAFDNFSAVVSVDGRPVRLQLCDTAGQDEFDK------LR---- 85 (201)
T ss_dssp -CEEEEEECSTTSSHHHHHHHHHC-----------CCSSEEEEEEEEETTEEEEEEEEECCCSTTCSS------SG----
T ss_pred cceEEEEECCCCCCHHHHHHHHHhCC---CCCCCCCcccceeEEEEEECCEEEEEEEEECCCCHHHHH------Hh----
Confidence 45699999999999999999999863 233333343322 122223 3577999999743111 01
Q ss_pred hhhccCceeEEEEEEecCCce
Q 029512 166 SISYRNFWSCTCFLIYIFYTN 186 (192)
Q Consensus 166 ~l~~~~~~~~v~~vvD~s~~~ 186 (192)
-...+.+|++++|+|+++++
T Consensus 86 -~~~~~~~~~~i~v~d~~~~~ 105 (201)
T 2q3h_A 86 -PLCYTNTDIFLLCFSVVSPS 105 (201)
T ss_dssp -GGGGTTCSEEEEEEETTCHH
T ss_pred -HhhcCCCcEEEEEEECCCHH
Confidence 11245679999999987654
No 121
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=99.04 E-value=5.6e-10 Score=95.16 Aligned_cols=25 Identities=40% Similarity=0.660 Sum_probs=23.5
Q ss_pred CCCeEEEEecCCCcHHHHHHHHhhc
Q 029512 91 DLPEIAFAGRSNVGKSSMLNALTRQ 115 (192)
Q Consensus 91 ~~~~i~lvG~~n~GKStlin~L~~~ 115 (192)
..|.|+++|.+|+|||||+|+|+|.
T Consensus 33 ~lp~I~vvG~~~sGKSSLln~l~g~ 57 (360)
T 3t34_A 33 SLPAIAVVGGQSSGKSSVLESIVGK 57 (360)
T ss_dssp CCCEEEEECBTTSSHHHHHHHHHTS
T ss_pred cCCEEEEECCCCCcHHHHHHHHhCC
Confidence 5679999999999999999999996
No 122
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=99.04 E-value=7.4e-10 Score=85.31 Aligned_cols=84 Identities=13% Similarity=-0.093 Sum_probs=51.3
Q ss_pred CCeEEEEecCCCcHHHHHHHHhhccCceeecCCCCceeEEEEEeeC--CeEEEEECCCCCCCCChHHHHHHHHHHHhhhc
Q 029512 92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLG--TKLCLVDLPGYGFAYAKEEVKDAWEELVSISY 169 (192)
Q Consensus 92 ~~~i~lvG~~n~GKStlin~L~~~~~~~~~~~~~g~T~~~~~~~~~--~~~~lvDtPG~~~~~~~~~~~~~~~~~~~l~~ 169 (192)
..+|+++|.+|||||||+|++++........+..+.+........+ ..+.+|||||..... ..+ ...
T Consensus 23 ~~ki~~vG~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~------~~~-----~~~ 91 (194)
T 3reg_A 23 ALKIVVVGDGAVGKTCLLLAFSKGEIPTAYVPTVFENFSHVMKYKNEEFILHLWDTAGQEEYD------RLR-----PLS 91 (194)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCCCSSCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGT------TTG-----GGG
T ss_pred eeEEEEECcCCCCHHHHHHHHhcCCCCCccCCeeeeeeEEEEEECCEEEEEEEEECCCcHHHH------HHh-----Hhh
Confidence 4699999999999999999999874111111222222222222222 456999999942210 011 223
Q ss_pred cCceeEEEEEEecCCce
Q 029512 170 RNFWSCTCFLIYIFYTN 186 (192)
Q Consensus 170 ~~~~~~v~~vvD~s~~~ 186 (192)
.+.+|++++|+|+++++
T Consensus 92 ~~~~d~~i~v~d~~~~~ 108 (194)
T 3reg_A 92 YADSDVVLLCFAVNNRT 108 (194)
T ss_dssp CTTCSEEEEEEETTCHH
T ss_pred ccCCcEEEEEEECCCHH
Confidence 45789999999987653
No 123
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=99.03 E-value=6e-10 Score=87.28 Aligned_cols=84 Identities=17% Similarity=0.067 Sum_probs=51.5
Q ss_pred CCeEEEEecCCCcHHHHHHHHhhccCceeecCCCCceeEEE-EEee------------CCeEEEEECCCCCCCCChHHHH
Q 029512 92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTIN-FFKL------------GTKLCLVDLPGYGFAYAKEEVK 158 (192)
Q Consensus 92 ~~~i~lvG~~n~GKStlin~L~~~~~~~~~~~~~g~T~~~~-~~~~------------~~~~~lvDtPG~~~~~~~~~~~ 158 (192)
..+|+++|.+|||||||+|+|++...........+.+.... .... ...+.||||||. +...
T Consensus 25 ~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~Dt~G~------~~~~ 98 (217)
T 2f7s_A 25 LIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKAFKVHLQLWDTAGQ------ERFR 98 (217)
T ss_dssp EEEEEEESCTTSSHHHHHHHHHCSCCCCEEEEEEEEEEEEEEEEEEC-------CCEEEEEEEEEEEESH------HHHH
T ss_pred eEEEEEECcCCCCHHHHHHHHhcCCCCcCCCCceeEEEEEEEEEECCccccccccCceeEEEEEEECCCc------HhHH
Confidence 46999999999999999999998631111111111111111 1111 356999999992 3233
Q ss_pred HHHHHHHhhhccCceeEEEEEEecCCce
Q 029512 159 DAWEELVSISYRNFWSCTCFLIYIFYTN 186 (192)
Q Consensus 159 ~~~~~~~~l~~~~~~~~v~~vvD~s~~~ 186 (192)
..+..+ .+.+|++++|+|++.++
T Consensus 99 ~~~~~~-----~~~~d~iilV~D~~~~~ 121 (217)
T 2f7s_A 99 SLTTAF-----FRDAMGFLLMFDLTSQQ 121 (217)
T ss_dssp HHHHHH-----HTTCCEEEEEEETTCHH
T ss_pred hHHHHH-----hcCCCEEEEEEECcCHH
Confidence 333333 34689999999987653
No 124
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Probab=99.03 E-value=2.8e-10 Score=105.21 Aligned_cols=35 Identities=26% Similarity=0.376 Sum_probs=30.1
Q ss_pred CCeEEEEecCCCcHHHHHHHHhhccCceeecCCCCc
Q 029512 92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGL 127 (192)
Q Consensus 92 ~~~i~lvG~~n~GKStlin~L~~~~~~~~~~~~~g~ 127 (192)
.++|+++|.+|+|||||+|+|+|. ....++..|++
T Consensus 69 ~~~V~VvG~~naGKSSLlNaLlg~-~~~~v~~~p~T 103 (695)
T 2j69_A 69 VFRLLVLGDMKRGKSTFLNALIGE-NLLPSDVNPCT 103 (695)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHTS-SCSCCCCCTTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC-CCCCCCCCCCc
Confidence 569999999999999999999998 56666776665
No 125
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=99.03 E-value=7.8e-10 Score=84.65 Aligned_cols=80 Identities=15% Similarity=0.102 Sum_probs=48.0
Q ss_pred CCeEEEEecCCCcHHHHHHHHhhccCceeecCCCCceeEEE--EEee-C--CeEEEEECCCCCCCCChHHHHHHHHHHHh
Q 029512 92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTIN--FFKL-G--TKLCLVDLPGYGFAYAKEEVKDAWEELVS 166 (192)
Q Consensus 92 ~~~i~lvG~~n~GKStlin~L~~~~~~~~~~~~~g~T~~~~--~~~~-~--~~~~lvDtPG~~~~~~~~~~~~~~~~~~~ 166 (192)
..+|+++|.+|||||||+|+|++.. ......+++.+.. .... + ..+.+|||||... ....+.
T Consensus 21 ~~ki~vvG~~~~GKSsli~~l~~~~---~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~------~~~~~~---- 87 (190)
T 3con_A 21 EYKLVVVGAGGVGKSALTIQLIQNH---FVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEE------YSAMRD---- 87 (190)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSS---CCSCCCTTCCEEEEEEEEETTEEEEEEEEECCC-------------------
T ss_pred eeEEEEECcCCCCHHHHHHHHHcCC---CccccCCccceEEEEEEEECCEEEEEEEEECCChHH------HHHHHH----
Confidence 3589999999999999999999873 2223333332221 1222 2 4589999999532 111111
Q ss_pred hhccCceeEEEEEEecCCc
Q 029512 167 ISYRNFWSCTCFLIYIFYT 185 (192)
Q Consensus 167 l~~~~~~~~v~~vvD~s~~ 185 (192)
...+.+|++++|+|++++
T Consensus 88 -~~~~~~d~~i~v~d~~~~ 105 (190)
T 3con_A 88 -QYMRTGEGFLCVFAINNS 105 (190)
T ss_dssp ---CTTCSEEEEEEETTCH
T ss_pred -HhhCcCCEEEEEEECcCH
Confidence 223467888888888764
No 126
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=99.03 E-value=4.4e-10 Score=85.42 Aligned_cols=81 Identities=14% Similarity=0.080 Sum_probs=49.6
Q ss_pred CCCeEEEEecCCCcHHHHHHHHhhccCceeecCCCCceeE--EEEEee-C--CeEEEEECCCCCCCCChHHHHHHHHHHH
Q 029512 91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQT--INFFKL-G--TKLCLVDLPGYGFAYAKEEVKDAWEELV 165 (192)
Q Consensus 91 ~~~~i~lvG~~n~GKStlin~L~~~~~~~~~~~~~g~T~~--~~~~~~-~--~~~~lvDtPG~~~~~~~~~~~~~~~~~~ 165 (192)
...+|+++|.+|+|||||+|+|++.. .......++.. ...... + ..+.+|||||...... .+..+
T Consensus 17 ~~~ki~v~G~~~~GKSsl~~~l~~~~---~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~------~~~~~- 86 (183)
T 3kkq_A 17 PTYKLVVVGDGGVGKSALTIQFFQKI---FVDDYDPTIEDSYLKHTEIDNQWAILDVLDTAGQEEFSA------MREQY- 86 (183)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHSC---CCSCCCTTCCEEEEEEEEETTEEEEEEEEECCSCGGGCS------SHHHH-
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCC---CCCCCCCCccceeEEEEEeCCcEEEEEEEECCCchhhHH------HHHHH-
Confidence 45699999999999999999999863 22222222221 122222 3 3466799999532111 11122
Q ss_pred hhhccCceeEEEEEEecCCc
Q 029512 166 SISYRNFWSCTCFLIYIFYT 185 (192)
Q Consensus 166 ~l~~~~~~~~v~~vvD~s~~ 185 (192)
.+.+|++++|+|++++
T Consensus 87 ----~~~~d~~i~v~d~~~~ 102 (183)
T 3kkq_A 87 ----MRTGDGFLIVYSVTDK 102 (183)
T ss_dssp ----HHHCSEEEEEEETTCH
T ss_pred ----HhcCCEEEEEEECCCH
Confidence 1246889999998765
No 127
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=99.03 E-value=4.8e-10 Score=86.05 Aligned_cols=83 Identities=27% Similarity=0.292 Sum_probs=51.2
Q ss_pred CCCCeEEEEecCCCcHHHHHHHHhhccCc-eeecCCCCceeEEEEEeeCCeEEEEECCCCCCCCChHHHHHHHHHHHhhh
Q 029512 90 PDLPEIAFAGRSNVGKSSMLNALTRQWGV-VRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVSIS 168 (192)
Q Consensus 90 ~~~~~i~lvG~~n~GKStlin~L~~~~~~-~~~~~~~g~T~~~~~~~~~~~~~lvDtPG~~~~~~~~~~~~~~~~~~~l~ 168 (192)
...++|+++|.+|||||||+|+|++.... ..++..++++.+. .+..+.+|||||....... +..+.. .
T Consensus 46 ~~~~~i~vvG~~g~GKSsll~~l~~~~~~~~~~~~~~~~~~~~----~~~~~~l~Dt~G~~~~~~~------~~~~~~-~ 114 (193)
T 2ged_A 46 SYQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSAADY----DGSGVTLVDFPGHVKLRYK------LSDYLK-T 114 (193)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHSSCC------------CC----CCTTCSEEEETTCCBSSCC------HHHHHH-H
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCCCCcccccCCCceeeee----cCCeEEEEECCCCchHHHH------HHHHHH-h
Confidence 35679999999999999999999987311 1112223333221 4678999999997542211 112211 1
Q ss_pred ccCceeEEEEEEecC
Q 029512 169 YRNFWSCTCFLIYIF 183 (192)
Q Consensus 169 ~~~~~~~v~~vvD~s 183 (192)
....+|++++|+|++
T Consensus 115 ~~~~~~~~i~v~d~~ 129 (193)
T 2ged_A 115 RAKFVKGLIFMVDST 129 (193)
T ss_dssp HGGGEEEEEEEEETT
T ss_pred hcccCCEEEEEEECC
Confidence 224579999999998
No 128
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=99.03 E-value=1.1e-09 Score=84.20 Aligned_cols=82 Identities=12% Similarity=-0.006 Sum_probs=52.8
Q ss_pred CCCeEEEEecCCCcHHHHHHHHhhccCceeecCCCCce---eEEEEEeeC--CeEEEEECCCCCCCCChHHHHHHHHHHH
Q 029512 91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLT---QTINFFKLG--TKLCLVDLPGYGFAYAKEEVKDAWEELV 165 (192)
Q Consensus 91 ~~~~i~lvG~~n~GKStlin~L~~~~~~~~~~~~~g~T---~~~~~~~~~--~~~~lvDtPG~~~~~~~~~~~~~~~~~~ 165 (192)
...+|+++|.+|+|||||+|+|++.. .......++ ........+ ..+.+|||||...... .+
T Consensus 17 ~~~ki~v~G~~~~GKssli~~l~~~~---~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~------~~---- 83 (194)
T 2atx_A 17 LMLKCVVVGDGAVGKTCLLMSYANDA---FPEEYVPTVFDHYAVSVTVGGKQYLLGLYDTAGQEDYDR------LR---- 83 (194)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHHSS---CCCSCCCSSCCCEEEEEESSSCEEEEEEECCCCSSSSTT------TG----
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCC---CCCCCCCcccceeEEEEEECCEEEEEEEEECCCCcchhH------HH----
Confidence 34699999999999999999999873 122222222 211222223 5688999999643111 11
Q ss_pred hhhccCceeEEEEEEecCCce
Q 029512 166 SISYRNFWSCTCFLIYIFYTN 186 (192)
Q Consensus 166 ~l~~~~~~~~v~~vvD~s~~~ 186 (192)
....+.+|++++|+|+++++
T Consensus 84 -~~~~~~~d~~i~v~d~~~~~ 103 (194)
T 2atx_A 84 -PLSYPMTDVFLICFSVVNPA 103 (194)
T ss_dssp -GGGCTTCSEEEEEEETTCHH
T ss_pred -HHhcCCCCEEEEEEECCCHH
Confidence 12345689999999987653
No 129
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=99.03 E-value=8.4e-10 Score=86.19 Aligned_cols=82 Identities=13% Similarity=-0.024 Sum_probs=52.3
Q ss_pred CCCeEEEEecCCCcHHHHHHHHhhccCceeecCCCCceeEEE---EEeeCC--eEEEEECCCCCCCCChHHHHHHHHHHH
Q 029512 91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTIN---FFKLGT--KLCLVDLPGYGFAYAKEEVKDAWEELV 165 (192)
Q Consensus 91 ~~~~i~lvG~~n~GKStlin~L~~~~~~~~~~~~~g~T~~~~---~~~~~~--~~~lvDtPG~~~~~~~~~~~~~~~~~~ 165 (192)
...+|+++|.+|||||||+|++++.. ......+++.+.. ....+. .+.+|||||..... ..+
T Consensus 29 ~~~ki~vvG~~~~GKSsLi~~l~~~~---~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~------~~~---- 95 (204)
T 4gzl_A 29 QAIKCVVVGDGAVGKTCLLISYTTNA---FPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGLEDYD------RLR---- 95 (204)
T ss_dssp -CEEEEEEESTTSSHHHHHHHHHHSC---CCC-CCCCSEEEEEEEEECC-CEEEEEEEEECCSGGGT------TTG----
T ss_pred CeEEEEEECcCCCCHHHHHHHHHhCC---CCCCcCCeecceeEEEEEECCEEEEEEEEECCCchhhH------HHH----
Confidence 45699999999999999999999863 2333344443322 122233 45599999963210 011
Q ss_pred hhhccCceeEEEEEEecCCce
Q 029512 166 SISYRNFWSCTCFLIYIFYTN 186 (192)
Q Consensus 166 ~l~~~~~~~~v~~vvD~s~~~ 186 (192)
....+.+|++++|+|++++.
T Consensus 96 -~~~~~~~d~~i~v~d~~~~~ 115 (204)
T 4gzl_A 96 -PLSYPQTDVFLICFSLVSPA 115 (204)
T ss_dssp -GGGCTTCSEEEEEEETTCHH
T ss_pred -HHHhccCCEEEEEEECCCHH
Confidence 22346789999999987653
No 130
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=99.03 E-value=6.8e-10 Score=82.13 Aligned_cols=80 Identities=14% Similarity=0.084 Sum_probs=49.5
Q ss_pred CeEEEEecCCCcHHHHHHHHhhccCceeecCCCCceeEE--EEEee---CCeEEEEECCCCCCCCChHHHHHHHHHHHhh
Q 029512 93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTI--NFFKL---GTKLCLVDLPGYGFAYAKEEVKDAWEELVSI 167 (192)
Q Consensus 93 ~~i~lvG~~n~GKStlin~L~~~~~~~~~~~~~g~T~~~--~~~~~---~~~~~lvDtPG~~~~~~~~~~~~~~~~~~~l 167 (192)
.+|+++|.+|+|||||+|+|++.. . ......++.+. ..... ...+.+|||||..... ..+..+.
T Consensus 4 ~~i~v~G~~~~GKssl~~~l~~~~-~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~------~~~~~~~-- 72 (166)
T 2ce2_X 4 YKLVVVGAGGVGKSALTIQLIQNH-F--VDECDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYS------AMRDQYM-- 72 (166)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSS-C--CSCCCTTCCEEEEEEEEETTEEEEEEEEECCCCSSCC------HHHHHHH--
T ss_pred eEEEEECCCCCCHHHHHHHHHhCc-C--ccccCCccceEEEEEEEECCEEEEEEEEECCCchhhh------HHHHHhh--
Confidence 479999999999999999999873 2 22222222221 11222 2457899999964311 1222222
Q ss_pred hccCceeEEEEEEecCCce
Q 029512 168 SYRNFWSCTCFLIYIFYTN 186 (192)
Q Consensus 168 ~~~~~~~~v~~vvD~s~~~ 186 (192)
..+|.+++++|+++++
T Consensus 73 ---~~~~~~i~v~d~~~~~ 88 (166)
T 2ce2_X 73 ---RTGEGFLCVFAINNTK 88 (166)
T ss_dssp ---HHCSEEEEEEETTCHH
T ss_pred ---ccCCEEEEEEECCCHH
Confidence 2468889999987653
No 131
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=99.02 E-value=5.3e-10 Score=84.61 Aligned_cols=78 Identities=10% Similarity=0.065 Sum_probs=50.8
Q ss_pred CCeEEEEecCCCcHHHHHHHHhhccCceeecCCCCceeEEEEEee--CCeEEEEECCCCCCCCChHHHHHHHHHHHhhhc
Q 029512 92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKL--GTKLCLVDLPGYGFAYAKEEVKDAWEELVSISY 169 (192)
Q Consensus 92 ~~~i~lvG~~n~GKStlin~L~~~~~~~~~~~~~g~T~~~~~~~~--~~~~~lvDtPG~~~~~~~~~~~~~~~~~~~l~~ 169 (192)
..+|+++|.+|||||||+|++++.. .....+..+.+........ ...+.+|||||... . .+
T Consensus 7 ~~ki~~vG~~~vGKTsli~~l~~~~-~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~---~--------~~----- 69 (178)
T 2iwr_A 7 ELRLGVLGDARSGKSSLIHRFLTGS-YQVLEKTESEQYKKEMLVDGQTHLVLIREEAGAPD---A--------KF----- 69 (178)
T ss_dssp EEEEEEECCGGGCHHHHHHHHHHSC-CCCCSSCSSSEEEEEEEETTEEEEEEEEECSSSCC---H--------HH-----
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCC-CCCcCCCcceeEEEEEEECCEEEEEEEEECCCCch---h--------HH-----
Confidence 4689999999999999999999873 3333333333322222222 24688999999643 0 11
Q ss_pred cCceeEEEEEEecCCce
Q 029512 170 RNFWSCTCFLIYIFYTN 186 (192)
Q Consensus 170 ~~~~~~v~~vvD~s~~~ 186 (192)
.+++|++++|+|+++++
T Consensus 70 ~~~~d~~ilv~D~~~~~ 86 (178)
T 2iwr_A 70 SGWADAVIFVFSLEDEN 86 (178)
T ss_dssp HHHCSEEEEEEETTCHH
T ss_pred HHhCCEEEEEEECcCHH
Confidence 12468888888887653
No 132
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=99.02 E-value=9e-10 Score=86.66 Aligned_cols=81 Identities=12% Similarity=0.047 Sum_probs=43.9
Q ss_pred CCeEEEEecCCCcHHHHHHHHhhccCceeecCCCCceeEE--EEEee---CCeEEEEECCCCCCCCChHHHHHHHHHHHh
Q 029512 92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTI--NFFKL---GTKLCLVDLPGYGFAYAKEEVKDAWEELVS 166 (192)
Q Consensus 92 ~~~i~lvG~~n~GKStlin~L~~~~~~~~~~~~~g~T~~~--~~~~~---~~~~~lvDtPG~~~~~~~~~~~~~~~~~~~ 166 (192)
..+|+++|.+|||||||+|+|++.. . ......++.+. ..... ...+.+|||||... ....+..
T Consensus 34 ~~ki~vvG~~~vGKSsli~~l~~~~-~--~~~~~~t~~~~~~~~~~~~~~~~~l~l~Dt~G~~~------~~~~~~~--- 101 (214)
T 2j1l_A 34 SVKVVLVGDGGCGKTSLLMVFADGA-F--PESYTPTVFERYMVNLQVKGKPVHLHIWDTAGQDD------YDRLRPL--- 101 (214)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHC----------CCCCCEEEEEEEEETTEEEEEEEEEC---------------------
T ss_pred eEEEEEECcCCCCHHHHHHHHHcCC-C--CCCCCCccceeEEEEEEECCEEEEEEEEECCCchh------hhHHHHH---
Confidence 4699999999999999999999863 2 12222222211 11222 23689999999532 1112211
Q ss_pred hhccCceeEEEEEEecCCce
Q 029512 167 ISYRNFWSCTCFLIYIFYTN 186 (192)
Q Consensus 167 l~~~~~~~~v~~vvD~s~~~ 186 (192)
..+.+|++++|+|+++++
T Consensus 102 --~~~~~d~~i~v~d~~~~~ 119 (214)
T 2j1l_A 102 --FYPDASVLLLCFDVTSPN 119 (214)
T ss_dssp -----CEEEEEEEEETTCHH
T ss_pred --HhccCCEEEEEEECcCHH
Confidence 235789999999987653
No 133
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...
Probab=99.02 E-value=2.4e-10 Score=90.11 Aligned_cols=84 Identities=11% Similarity=0.034 Sum_probs=58.7
Q ss_pred CCCeEEEEecCCCcHHHHHHHHhhccCceeecCCCCceeEEEEEee---CCeEEEEECCCCCCCCChHHHHHHHHHHHhh
Q 029512 91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKL---GTKLCLVDLPGYGFAYAKEEVKDAWEELVSI 167 (192)
Q Consensus 91 ~~~~i~lvG~~n~GKStlin~L~~~~~~~~~~~~~g~T~~~~~~~~---~~~~~lvDtPG~~~~~~~~~~~~~~~~~~~l 167 (192)
...+|+++|.+|||||||+|+++............|+|........ +..+.+|||||...... .+..+
T Consensus 14 ~~~ki~v~G~~~~GKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~------~~~~~--- 84 (221)
T 3gj0_A 14 VQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGG------LRDGY--- 84 (221)
T ss_dssp CEEEEEEEECTTSSHHHHHTTBHHHHHTCEEETTTTEEEEEEEEEETTEEEEEEEEEECSGGGTSC------CCHHH---
T ss_pred cceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCChHHHhH------HHHHH---
Confidence 4569999999999999999995543234566778888887665543 45789999999432110 11111
Q ss_pred hccCceeEEEEEEecCCc
Q 029512 168 SYRNFWSCTCFLIYIFYT 185 (192)
Q Consensus 168 ~~~~~~~~v~~vvD~s~~ 185 (192)
.+.++++++|+|++++
T Consensus 85 --~~~~~~~i~v~d~~~~ 100 (221)
T 3gj0_A 85 --YIQAQCAIIMFDVTSR 100 (221)
T ss_dssp --HTTCCEEEEEEETTCH
T ss_pred --HhcCCEEEEEEECCCH
Confidence 2367899999998765
No 134
>3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A
Probab=99.02 E-value=1.3e-09 Score=101.49 Aligned_cols=93 Identities=20% Similarity=0.166 Sum_probs=59.2
Q ss_pred CCCeEEEEecCCCcHHHHHHHHhhccCceeecCCCCceeE----------------------------------------
Q 029512 91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQT---------------------------------------- 130 (192)
Q Consensus 91 ~~~~i~lvG~~n~GKStlin~L~~~~~~~~~~~~~g~T~~---------------------------------------- 130 (192)
..|+|+++|.+|+|||||+|+|+|.. +...+.. .+|+.
T Consensus 50 ~lp~I~vvG~~saGKSSllnaL~g~~-~LP~g~g-~~Tr~Pl~l~l~~~~~~~~~~l~~~~~~~~~~~~v~~~I~~~~~~ 127 (772)
T 3zvr_A 50 DLPQIAVVGGQSAGKSSVLENFVGRD-FLPRGSG-IVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDR 127 (772)
T ss_dssp CCSEEEEEECTTTCHHHHHHHHHSSC-CSCCSSS-CSCSSCEEEEEEECSSCEEECSTTTTCCBCCHHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCC-ccCcCCc-cccccceEEEeecCCcchhheeccCCcccCCHHHHHHHHHHHHhh
Confidence 57899999999999999999999973 2111211 12221
Q ss_pred -----------EE----EEeeCCeEEEEECCCCCCCC---ChHHHHHHHHHHHhhhccCceeEEEEEEecCCc
Q 029512 131 -----------IN----FFKLGTKLCLVDLPGYGFAY---AKEEVKDAWEELVSISYRNFWSCTCFLIYIFYT 185 (192)
Q Consensus 131 -----------~~----~~~~~~~~~lvDtPG~~~~~---~~~~~~~~~~~~~~l~~~~~~~~v~~vvD~s~~ 185 (192)
+. .......+.|+||||+.... ....+...+..++.-.-....|++++|+|++.+
T Consensus 128 ~~g~~~~is~~~i~l~I~~P~~~qL~LVDTPGi~~~~~~~qp~di~~~i~~lv~~yi~~~aDlIL~VVDAs~~ 200 (772)
T 3zvr_A 128 VTGTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSD 200 (772)
T ss_dssp HHCSTTCCCSCCEEEEEEETTCCSEEEEECCCCCCCCSSCCCCHHHHHHHHHHHHHHTSTTEEEEEEEETTSC
T ss_pred hcCCCCcccccceEEEEecCCCCceEEEECCCcccCCCCCCcHHHHHHHHHHHHHHHhcCCcEEEEEEcCCCC
Confidence 11 11124568999999998732 123333445555441111678999999999864
No 135
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=99.01 E-value=1.7e-09 Score=84.37 Aligned_cols=85 Identities=15% Similarity=-0.056 Sum_probs=52.9
Q ss_pred CCCeEEEEecCCCcHHHHHHHHhhccCceeecCCCCceeEEEEEeeC--CeEEEEECCCCCCCCChHHHHHHHHHHHhhh
Q 029512 91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLG--TKLCLVDLPGYGFAYAKEEVKDAWEELVSIS 168 (192)
Q Consensus 91 ~~~~i~lvG~~n~GKStlin~L~~~~~~~~~~~~~g~T~~~~~~~~~--~~~~lvDtPG~~~~~~~~~~~~~~~~~~~l~ 168 (192)
...+|+++|.+|+|||||+|.+++........+..+..........+ ..+.+|||||...... .+ -.
T Consensus 8 ~~~ki~i~G~~~~GKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~------~~-----~~ 76 (212)
T 2j0v_A 8 KFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGQIVNLGLWDTAGQEDYSR------LR-----PL 76 (212)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCSSCCCEEEEEECSSCEEEEEEECCCCCCCCCC-------------CG
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCCCccCCCccceeEEEEEEECCEEEEEEEEECCCcHHHHH------HH-----Hh
Confidence 34699999999999999999999863111111222222222222222 4789999999743111 11 12
Q ss_pred ccCceeEEEEEEecCCce
Q 029512 169 YRNFWSCTCFLIYIFYTN 186 (192)
Q Consensus 169 ~~~~~~~v~~vvD~s~~~ 186 (192)
..+.+|++++|+|+++++
T Consensus 77 ~~~~~d~~ilv~d~~~~~ 94 (212)
T 2j0v_A 77 SYRGADIFVLAFSLISKA 94 (212)
T ss_dssp GGTTCSEEEEEEETTCHH
T ss_pred hccCCCEEEEEEECCCHH
Confidence 345689999999987754
No 136
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=99.00 E-value=5.9e-10 Score=83.41 Aligned_cols=82 Identities=12% Similarity=0.023 Sum_probs=45.2
Q ss_pred CeEEEEecCCCcHHHHHHHHhhccCceeecCCCCceeEE--EEEee---CCeEEEEECCCCCCCCChHHHHHHHHHHHhh
Q 029512 93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTI--NFFKL---GTKLCLVDLPGYGFAYAKEEVKDAWEELVSI 167 (192)
Q Consensus 93 ~~i~lvG~~n~GKStlin~L~~~~~~~~~~~~~g~T~~~--~~~~~---~~~~~lvDtPG~~~~~~~~~~~~~~~~~~~l 167 (192)
.+|+++|.+|||||||+|+|++.. ...... +..|.+. ..... ...+.+|||||...... ..+..+
T Consensus 3 ~ki~ivG~~~~GKSsli~~l~~~~-~~~~~~-~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~-----~~~~~~--- 72 (169)
T 3q85_A 3 FKVMLVGESGVGKSTLAGTFGGLQ-GDHAHE-MENSEDTYERRIMVDKEEVTLIVYDIWEQGDAGG-----WLQDHC--- 72 (169)
T ss_dssp EEEEEECSTTSSHHHHHHHHHCC--------------CEEEEEEEETTEEEEEEEECCCCC-------------CHH---
T ss_pred EEEEEECCCCCCHHHHHHHHHhcc-Cccccc-CCCcCCeeeEEEEECCeEEEEEEEECCCccccch-----hhhhhh---
Confidence 589999999999999999998753 122211 1112211 11112 35688999999753110 011111
Q ss_pred hccCceeEEEEEEecCCce
Q 029512 168 SYRNFWSCTCFLIYIFYTN 186 (192)
Q Consensus 168 ~~~~~~~~v~~vvD~s~~~ 186 (192)
.+.+|++++|+|+++++
T Consensus 73 --~~~~d~~i~v~d~~~~~ 89 (169)
T 3q85_A 73 --LQTGDAFLIVFSVTDRR 89 (169)
T ss_dssp --HHHCSEEEEEEETTCHH
T ss_pred --hccCCEEEEEEECCChH
Confidence 12468899999987753
No 137
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=98.98 E-value=1.4e-09 Score=85.67 Aligned_cols=85 Identities=14% Similarity=0.027 Sum_probs=51.9
Q ss_pred CCCeEEEEecCCCcHHHHHHHHhhccCceeecCCCCceeEEEEEee--CCeEEEEECCCCCCCCChHHHHHHHHHHHhhh
Q 029512 91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKL--GTKLCLVDLPGYGFAYAKEEVKDAWEELVSIS 168 (192)
Q Consensus 91 ~~~~i~lvG~~n~GKStlin~L~~~~~~~~~~~~~g~T~~~~~~~~--~~~~~lvDtPG~~~~~~~~~~~~~~~~~~~l~ 168 (192)
...+|+++|.+|||||||+|+|++........+..+.+........ ...+.+|||||...-. ..+ -.
T Consensus 26 ~~~ki~vvG~~~vGKSsL~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~------~~~-----~~ 94 (214)
T 3q3j_B 26 ARCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENYTACLETEEQRVELSLWDTSGSPYYD------NVR-----PL 94 (214)
T ss_dssp -CEEEEEECSTTSSHHHHHHHHHHSCCCSSCCCCSEEEEEEEEEC--CEEEEEEEEECCSGGGT------TTG-----GG
T ss_pred ceEEEEEECcCCCCHHHHHHHHhcCCCCCCcCCeeeeeEEEEEEECCEEEEEEEEECCCCHhHH------HHH-----HH
Confidence 4579999999999999999999987311111122222222111111 3578999999953210 011 12
Q ss_pred ccCceeEEEEEEecCCce
Q 029512 169 YRNFWSCTCFLIYIFYTN 186 (192)
Q Consensus 169 ~~~~~~~v~~vvD~s~~~ 186 (192)
..+.+|++++|+|++++.
T Consensus 95 ~~~~~d~~i~v~d~~~~~ 112 (214)
T 3q3j_B 95 CYSDSDAVLLCFDISRPE 112 (214)
T ss_dssp GCTTCSEEEEEEETTCTH
T ss_pred HcCCCeEEEEEEECcCHH
Confidence 345689999999988764
No 138
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=98.98 E-value=2.9e-10 Score=96.95 Aligned_cols=25 Identities=20% Similarity=0.434 Sum_probs=23.0
Q ss_pred CCCCeEEEEecCCCcHHHHHHHHhh
Q 029512 90 PDLPEIAFAGRSNVGKSSMLNALTR 114 (192)
Q Consensus 90 ~~~~~i~lvG~~n~GKStlin~L~~ 114 (192)
...+.|+|+|+||||||||+|+|++
T Consensus 72 ~~~~~v~lvG~pgaGKSTLln~L~~ 96 (349)
T 2www_A 72 PLAFRVGLSGPPGAGKSTFIEYFGK 96 (349)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHH
T ss_pred cCceEEEEEcCCCCCHHHHHHHHHH
Confidence 4577999999999999999999997
No 139
>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana}
Probab=98.98 E-value=1.1e-10 Score=102.28 Aligned_cols=88 Identities=32% Similarity=0.263 Sum_probs=52.4
Q ss_pred CCCCCeEEEEecCCCcHHHHHHHHhhccCceeecCCCCceeEEEEEe---eCC-eEEEEECCCCCCCC--ChHHHHHHHH
Q 029512 89 APDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFK---LGT-KLCLVDLPGYGFAY--AKEEVKDAWE 162 (192)
Q Consensus 89 ~~~~~~i~lvG~~n~GKStlin~L~~~~~~~~~~~~~g~T~~~~~~~---~~~-~~~lvDtPG~~~~~--~~~~~~~~~~ 162 (192)
....++|+++|.+|+|||||+|+|++. ....++..+|+|.+..... .+. .+.+|||||+.+.. ........
T Consensus 31 ~~~~~kI~IvG~~~vGKSTLin~L~~~-~~~~~~~~~gtT~d~~~~~~~~~~~~~l~liDTpG~~d~~~l~~~~~~~~-- 107 (423)
T 3qq5_A 31 AGFRRYIVVAGRRNVGKSSFMNALVGQ-NVSIVSDYAGTTTDPVYKSMELHPIGPVTLVDTPGLDDVGELGRLRVEKA-- 107 (423)
T ss_dssp -CCCEEEEEECSCSTTTTTTTTSSCC--------------CCCCEEEEEETTTEEEEEEECSSTTCCCTTCCCCHHHH--
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHcC-CCCccCCCCCeeeeeEEEEEEECCCCeEEEEECcCCCcccchhHHHHHHH--
Confidence 345679999999999999999999997 4556778888888765333 233 89999999986521 11111221
Q ss_pred HHHhhhccCceeEEEEEEecC
Q 029512 163 ELVSISYRNFWSCTCFLIYIF 183 (192)
Q Consensus 163 ~~~~l~~~~~~~~v~~vvD~s 183 (192)
......+|++++|+|++
T Consensus 108 ----~~~l~~aD~vllVvD~~ 124 (423)
T 3qq5_A 108 ----RRVFYRADCGILVTDSA 124 (423)
T ss_dssp ----HHHHTSCSEEEEECSSS
T ss_pred ----HHHHhcCCEEEEEEeCC
Confidence 11234689999999984
No 140
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=98.98 E-value=1.6e-09 Score=84.12 Aligned_cols=84 Identities=12% Similarity=-0.058 Sum_probs=51.3
Q ss_pred CCeEEEEecCCCcHHHHHHHHhhccCceeecCCCCceeEEEEEeeC--CeEEEEECCCCCCCCChHHHHHHHHHHHhhhc
Q 029512 92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLG--TKLCLVDLPGYGFAYAKEEVKDAWEELVSISY 169 (192)
Q Consensus 92 ~~~i~lvG~~n~GKStlin~L~~~~~~~~~~~~~g~T~~~~~~~~~--~~~~lvDtPG~~~~~~~~~~~~~~~~~~~l~~ 169 (192)
..+|+++|.+|+|||||+|++++........+..+.+........+ ..+.+|||||..... ..+ -..
T Consensus 25 ~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~------~~~-----~~~ 93 (201)
T 2gco_A 25 RKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYIADIEVDGKQVELALWDTAGQEDYD------RLR-----PLS 93 (201)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSSCCSSCCCSSCCCCEEEEEETTEEEEEEEECCCCSGGGT------TTG-----GGG
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCcCCcccCCcccceEEEEEEECCEEEEEEEEECCCchhHH------HHH-----HHh
Confidence 3589999999999999999999873211111222222211222222 478999999953210 011 123
Q ss_pred cCceeEEEEEEecCCce
Q 029512 170 RNFWSCTCFLIYIFYTN 186 (192)
Q Consensus 170 ~~~~~~v~~vvD~s~~~ 186 (192)
.+.+|++++|+|++.++
T Consensus 94 ~~~~d~~i~v~d~~~~~ 110 (201)
T 2gco_A 94 YPDTDVILMCFSIDSPD 110 (201)
T ss_dssp CTTCSEEEEEEETTCHH
T ss_pred cCCCCEEEEEEECCCHH
Confidence 45789999999987653
No 141
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=98.98 E-value=5.9e-10 Score=84.38 Aligned_cols=82 Identities=13% Similarity=-0.051 Sum_probs=46.7
Q ss_pred CCCeEEEEecCCCcHHHHHHHHhhccCceeecCCCCceeEEE-----EEeeCCeEEEEECCCCCCCCChHHHHHHHHHHH
Q 029512 91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTIN-----FFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELV 165 (192)
Q Consensus 91 ~~~~i~lvG~~n~GKStlin~L~~~~~~~~~~~~~g~T~~~~-----~~~~~~~~~lvDtPG~~~~~~~~~~~~~~~~~~ 165 (192)
...+|+++|.+|+|||||+|++++.. ......+++.+.. .......+.+|||||...... .+
T Consensus 7 ~~~ki~v~G~~~~GKssl~~~~~~~~---~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~------~~---- 73 (182)
T 3bwd_D 7 RFIKCVTVGDGAVGKTCLLISYTSNT---FPTDYVPTVFDNFSANVVVNGATVNLGLWDTAGQEDYNR------LR---- 73 (182)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHSC---CC----------CBCCCC-------CEEECCCC-CTTTT------TG----
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCC---CCCCCCCeeeeeEEEEEEECCEEEEEEEEECCCChhhhh------hH----
Confidence 35799999999999999999999863 1222222222111 111234567999999643110 11
Q ss_pred hhhccCceeEEEEEEecCCce
Q 029512 166 SISYRNFWSCTCFLIYIFYTN 186 (192)
Q Consensus 166 ~l~~~~~~~~v~~vvD~s~~~ 186 (192)
....+.+|++++|+|+++++
T Consensus 74 -~~~~~~~d~~i~v~d~~~~~ 93 (182)
T 3bwd_D 74 -PLSYRGADVFILAFSLISKA 93 (182)
T ss_dssp -GGGGTTCSEEEEEEETTCHH
T ss_pred -HhhccCCCEEEEEEECCCHH
Confidence 12345689999999987653
No 142
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=98.97 E-value=1.8e-09 Score=82.50 Aligned_cols=84 Identities=15% Similarity=0.022 Sum_probs=51.1
Q ss_pred CCeEEEEecCCCcHHHHHHHHhhccCceeecCCCCceeEEEEEee--CCeEEEEECCCCCCCCChHHHHHHHHHHHhhhc
Q 029512 92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKL--GTKLCLVDLPGYGFAYAKEEVKDAWEELVSISY 169 (192)
Q Consensus 92 ~~~i~lvG~~n~GKStlin~L~~~~~~~~~~~~~g~T~~~~~~~~--~~~~~lvDtPG~~~~~~~~~~~~~~~~~~~l~~ 169 (192)
..+|+++|.+|||||||+|+|++........+..+.+........ ...+.+|||||..... .+. -..
T Consensus 7 ~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~----------~~~-~~~ 75 (184)
T 1m7b_A 7 KCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIELSLWDTSGSPYYD----------NVR-PLS 75 (184)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEEEEEEECSSCEEEEEEEEECCSGGGT----------TTG-GGG
T ss_pred EEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEECCEEEEEEEEECCCChhhh----------hhH-Hhh
Confidence 468999999999999999999986311111122222221111111 3468999999953210 000 123
Q ss_pred cCceeEEEEEEecCCce
Q 029512 170 RNFWSCTCFLIYIFYTN 186 (192)
Q Consensus 170 ~~~~~~v~~vvD~s~~~ 186 (192)
.+.+|++++|+|+++++
T Consensus 76 ~~~~~~~i~v~d~~~~~ 92 (184)
T 1m7b_A 76 YPDSDAVLICFDISRPE 92 (184)
T ss_dssp CTTCSEEEEEEETTCHH
T ss_pred cCCCcEEEEEEECCCHH
Confidence 45678999999987653
No 143
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=98.97 E-value=3.8e-10 Score=85.82 Aligned_cols=82 Identities=18% Similarity=0.203 Sum_probs=36.9
Q ss_pred CCeEEEEecCCCcHHHHHHHHhhccCceeecCCCCceeEEE--EEee-C--CeEEEEECCCCCCCCChHHHHHHHHHHHh
Q 029512 92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTIN--FFKL-G--TKLCLVDLPGYGFAYAKEEVKDAWEELVS 166 (192)
Q Consensus 92 ~~~i~lvG~~n~GKStlin~L~~~~~~~~~~~~~g~T~~~~--~~~~-~--~~~~lvDtPG~~~~~~~~~~~~~~~~~~~ 166 (192)
..+|+++|.+|+|||||+|+|++.. ......+.++.+.. .... + ..+.+|||||... +..+.
T Consensus 8 ~~ki~v~G~~~~GKssl~~~l~~~~--~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~----------~~~~~- 74 (183)
T 2fu5_C 8 LFKLLLIGDSGVGKTCVLFRFSEDA--FNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQER----------FRTIT- 74 (183)
T ss_dssp EEEEEEECCCCC------------------CHHHHHCEEEEEEEEEETTEEEEEEEEEC-------------------C-
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCC--CCCCCCCcccceeEEEEEEECCEEEEEEEEcCCCChh----------hhhhH-
Confidence 4689999999999999999999763 12222233333332 2222 3 5799999999532 11111
Q ss_pred hhccCceeEEEEEEecCCce
Q 029512 167 ISYRNFWSCTCFLIYIFYTN 186 (192)
Q Consensus 167 l~~~~~~~~v~~vvD~s~~~ 186 (192)
....+.+|++++|+|+++++
T Consensus 75 ~~~~~~~d~~i~v~d~~~~~ 94 (183)
T 2fu5_C 75 TAYYRGAMGIMLVYDITNEK 94 (183)
T ss_dssp CTTTTTCSEEEEEEETTCHH
T ss_pred HHHHhcCCEEEEEEECcCHH
Confidence 22345788999999988753
No 144
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=98.97 E-value=8.5e-10 Score=86.49 Aligned_cols=82 Identities=28% Similarity=0.333 Sum_probs=53.2
Q ss_pred CCCCeEEEEecCCCcHHHHHHHHhhccCceee--cCCCCceeEEEEEeeCCeEEEEECCCCCCCCChHHHHHHHHHHHhh
Q 029512 90 PDLPEIAFAGRSNVGKSSMLNALTRQWGVVRT--SDKPGLTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVSI 167 (192)
Q Consensus 90 ~~~~~i~lvG~~n~GKStlin~L~~~~~~~~~--~~~~g~T~~~~~~~~~~~~~lvDtPG~~~~~~~~~~~~~~~~~~~l 167 (192)
...++|+++|.+|+|||||+|+|++.. .... +..+.++.+ .....+.+|||||.... ...+..+..
T Consensus 10 ~~~~~i~~~G~~g~GKTsl~~~l~~~~-~~~~~~~~~~~~~~~----~~~~~~~l~Dt~G~~~~------~~~~~~~~~- 77 (218)
T 1nrj_B 10 SYQPSIIIAGPQNSGKTSLLTLLTTDS-VRPTVVSQEPLSAAD----YDGSGVTLVDFPGHVKL------RYKLSDYLK- 77 (218)
T ss_dssp CCCCEEEEECSTTSSHHHHHHHHHHSS-CCCBCCCSSCEEETT----GGGSSCEEEECCCCGGG------THHHHHHHH-
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCC-CCCeeeecCceEEEE----eeCceEEEEECCCcHHH------HHHHHHHHH-
Confidence 456899999999999999999999873 2211 122222221 14678999999997431 122333321
Q ss_pred hccCceeEEEEEEecC
Q 029512 168 SYRNFWSCTCFLIYIF 183 (192)
Q Consensus 168 ~~~~~~~~v~~vvD~s 183 (192)
.....++++++|+|++
T Consensus 78 ~~~~~~~~~i~v~D~~ 93 (218)
T 1nrj_B 78 TRAKFVKGLIFMVDST 93 (218)
T ss_dssp HHGGGEEEEEEEEETT
T ss_pred hccccCCEEEEEEECC
Confidence 1123478999999998
No 145
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=98.96 E-value=7.8e-10 Score=85.47 Aligned_cols=83 Identities=18% Similarity=0.214 Sum_probs=33.1
Q ss_pred CCeEEEEecCCCcHHHHHHHHhhccCceeecCCCCcee-EE--EEEee-----CCeEEEEECCCCCCCCChHHHHHHHHH
Q 029512 92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQ-TI--NFFKL-----GTKLCLVDLPGYGFAYAKEEVKDAWEE 163 (192)
Q Consensus 92 ~~~i~lvG~~n~GKStlin~L~~~~~~~~~~~~~g~T~-~~--~~~~~-----~~~~~lvDtPG~~~~~~~~~~~~~~~~ 163 (192)
..+|+++|.+|+|||||+|+|++.. .........++. +. ..... ...+.+|||||.. . +..
T Consensus 20 ~~~i~v~G~~~~GKssli~~l~~~~-~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~------~----~~~ 88 (208)
T 2yc2_C 20 RCKVAVVGEATVGKSALISMFTSKG-SKFLKDYAMTSGVEVVVAPVTIPDTTVSVELFLLDTAGSD------L----YKE 88 (208)
T ss_dssp EEEEEEC-----------------------------------CEEEECTTSSEEEEEEEEETTTTH------H----HHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCC-CcccCCCCCccceEEEEEEEEECCcccEEEEEEEECCCcH------H----HHH
Confidence 4599999999999999999999861 122223322322 22 12222 2469999999962 1 111
Q ss_pred HHhhhccCceeEEEEEEecCCce
Q 029512 164 LVSISYRNFWSCTCFLIYIFYTN 186 (192)
Q Consensus 164 ~~~l~~~~~~~~v~~vvD~s~~~ 186 (192)
+. ....+.+|++++|+|+++++
T Consensus 89 ~~-~~~~~~~d~~i~v~d~~~~~ 110 (208)
T 2yc2_C 89 QI-SQYWNGVYYAILVFDVSSME 110 (208)
T ss_dssp HH-STTCCCCCEEEEEEETTCHH
T ss_pred HH-HHHHhhCcEEEEEEECCCHH
Confidence 21 23456789999999997753
No 146
>3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus}
Probab=98.96 E-value=2e-09 Score=94.43 Aligned_cols=84 Identities=17% Similarity=0.158 Sum_probs=57.3
Q ss_pred CCCCeEEEEecCCCcHHHHHHHHhhccCceee------------------------------cCCCCceeEEEEEe---e
Q 029512 90 PDLPEIAFAGRSNVGKSSMLNALTRQWGVVRT------------------------------SDKPGLTQTINFFK---L 136 (192)
Q Consensus 90 ~~~~~i~lvG~~n~GKStlin~L~~~~~~~~~------------------------------~~~~g~T~~~~~~~---~ 136 (192)
....+|+++|.+|+|||||+|+|++... ... ....|.|.+..... .
T Consensus 15 k~~~~i~iiG~~d~GKSTL~~~Ll~~~~-~i~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTid~~~~~~~~~ 93 (439)
T 3j2k_7 15 KEHVNVVFIGHVDAGKSTIGGQIMYLTG-MVDKRTLEKYEREAKEKNRETWYLSWALDTNQEERDKGKTVEVGRAYFETE 93 (439)
T ss_pred CceeEEEEEeCCCCCHHHHHHHHHHHcC-CCchHHHHHHHHHHHhccccchhhhhhhccchhHhhcCceEEEeEEEEecC
Confidence 3457999999999999999999975421 110 11257788765433 3
Q ss_pred CCeEEEEECCCCCCCCChHHHHHHHHHHHhhhccCceeEEEEEEecCCc
Q 029512 137 GTKLCLVDLPGYGFAYAKEEVKDAWEELVSISYRNFWSCTCFLIYIFYT 185 (192)
Q Consensus 137 ~~~~~lvDtPG~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~~vvD~s~~ 185 (192)
+..+.+|||||... ..... ......+|++++|+|++..
T Consensus 94 ~~~~~iiDTPGh~~-----f~~~~------~~~~~~aD~~ilVVDa~~g 131 (439)
T 3j2k_7 94 KKHFTILDAPGHKS-----FVPNM------IGGASQADLAVLVISARKG 131 (439)
T ss_pred CeEEEEEECCChHH-----HHHHH------HhhHhhCCEEEEEEECCCC
Confidence 67899999999531 11111 2334568999999999864
No 147
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=98.93 E-value=3.3e-09 Score=82.10 Aligned_cols=86 Identities=15% Similarity=0.059 Sum_probs=52.1
Q ss_pred CCCCeEEEEecCCCcHHHHHHHHhhccCceeecCCCCceeEEEEE---eeCCeEEEEECCCCCCCCChHHHHHHH--HHH
Q 029512 90 PDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFF---KLGTKLCLVDLPGYGFAYAKEEVKDAW--EEL 164 (192)
Q Consensus 90 ~~~~~i~lvG~~n~GKStlin~L~~~~~~~~~~~~~g~T~~~~~~---~~~~~~~lvDtPG~~~~~~~~~~~~~~--~~~ 164 (192)
....+|+++|.+|||||||+|.+++......+.....++...... .....+.+|||||...-... .| ..+
T Consensus 18 ~~~~ki~~vG~~~vGKTsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~-----~~~~~~~ 92 (196)
T 3llu_A 18 GSKPRILLMGLRRSGKSSIQKVVFHKMSPNETLFLESTNKIYKDDISNSSFVNFQIWDFPGQMDFFDP-----TFDYEMI 92 (196)
T ss_dssp --CCEEEEEESTTSSHHHHHHHHHSCCCGGGGGGCCCCCSCEEEEECCTTSCCEEEEECCSSCCTTCT-----TCCHHHH
T ss_pred CcceEEEEECCCCCCHHHHHHHHHhcCCCcceeeeccccceeeeeccCCCeeEEEEEECCCCHHHHhh-----hhhcccc
Confidence 456799999999999999999999863211111111222222222 12468999999995431110 01 111
Q ss_pred HhhhccCceeEEEEEEecCCc
Q 029512 165 VSISYRNFWSCTCFLIYIFYT 185 (192)
Q Consensus 165 ~~l~~~~~~~~v~~vvD~s~~ 185 (192)
.+.+|++++|+|++++
T Consensus 93 -----~~~~~~~i~v~d~~~~ 108 (196)
T 3llu_A 93 -----FRGTGALIYVIDAQDD 108 (196)
T ss_dssp -----HHTCSEEEEEEETTSC
T ss_pred -----cccCCEEEEEEECCCc
Confidence 1357999999999875
No 148
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=98.93 E-value=2.7e-09 Score=94.33 Aligned_cols=82 Identities=18% Similarity=0.149 Sum_probs=55.4
Q ss_pred CCeEEEEecCCCcHHHHHHHHhhccCceeecCCCCceeEEEEEeeCCeEEEEECCCCCCCCChHHHHHHHHHHHhhhccC
Q 029512 92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVSISYRN 171 (192)
Q Consensus 92 ~~~i~lvG~~n~GKStlin~L~~~~~~~~~~~~~g~T~~~~~~~~~~~~~lvDtPG~~~~~~~~~~~~~~~~~~~l~~~~ 171 (192)
..+|+++|.+|||||||+|+|++.. .....++.+.+.. .....+..+.+|||||...-. ..+ ....+
T Consensus 322 ~~ki~lvG~~nvGKSsLl~~l~~~~-~~~~~~T~~~~~~-~~~~~~~~~~l~Dt~G~~~~~------~~~-----~~~~~ 388 (497)
T 3lvq_E 322 EMRILMLGLDAAGKTTILYKLKLGQ-SVTTIPTVGFNVE-TVTYKNVKFNVWDVGGQDKIR------PLW-----RHYYT 388 (497)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSS-CCCCCCCSSEEEE-EEESSSCEEEEEEECCCGGGS------GGG-----GGGGT
T ss_pred ceeEEEEcCCCCCHHHHHHHHhcCC-CCCcCCccceeEE-EEEeCCEEEEEEECCCcHHHH------HHH-----HHHhc
Confidence 4689999999999999999999973 3333333333322 122247889999999943211 111 23346
Q ss_pred ceeEEEEEEecCCce
Q 029512 172 FWSCTCFLIYIFYTN 186 (192)
Q Consensus 172 ~~~~v~~vvD~s~~~ 186 (192)
.+|++++|+|+++++
T Consensus 389 ~ad~~i~V~D~~~~~ 403 (497)
T 3lvq_E 389 GTQGLIFVVDCADRD 403 (497)
T ss_dssp TCCEEEEEEETTCGG
T ss_pred cCCEEEEEEECcchh
Confidence 789999999998763
No 149
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=98.93 E-value=3e-09 Score=83.47 Aligned_cols=84 Identities=15% Similarity=0.044 Sum_probs=51.1
Q ss_pred CCeEEEEecCCCcHHHHHHHHhhccCceeecCCCCceeEEEEEee--CCeEEEEECCCCCCCCChHHHHHHHHHHHhhhc
Q 029512 92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKL--GTKLCLVDLPGYGFAYAKEEVKDAWEELVSISY 169 (192)
Q Consensus 92 ~~~i~lvG~~n~GKStlin~L~~~~~~~~~~~~~g~T~~~~~~~~--~~~~~lvDtPG~~~~~~~~~~~~~~~~~~~l~~ 169 (192)
..+|+++|.+|||||||+|+|++...........+.+........ ...+.+|||||.... ..+. -..
T Consensus 28 ~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~----------~~~~-~~~ 96 (205)
T 1gwn_A 28 KCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIELSLWDTSGSPYY----------DNVR-PLS 96 (205)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEEEEEEESSSSEEEEEEEEECCSGGG----------TTTG-GGG
T ss_pred eeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCccceeEEEEEEECCEEEEEEEEeCCCcHhh----------hHHH-Hhh
Confidence 469999999999999999999987311111112222211111112 346899999995321 0011 123
Q ss_pred cCceeEEEEEEecCCce
Q 029512 170 RNFWSCTCFLIYIFYTN 186 (192)
Q Consensus 170 ~~~~~~v~~vvD~s~~~ 186 (192)
.+.+|++++|+|+++++
T Consensus 97 ~~~~d~~ilv~D~~~~~ 113 (205)
T 1gwn_A 97 YPDSDAVLICFDISRPE 113 (205)
T ss_dssp CTTCSEEEEEEETTCHH
T ss_pred ccCCCEEEEEEECCCHH
Confidence 45789999999987653
No 150
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=98.88 E-value=5.1e-09 Score=80.20 Aligned_cols=81 Identities=12% Similarity=0.117 Sum_probs=44.9
Q ss_pred CeEEEEecCCCcHHHHHHHHhhccCceeecC-CCCceeEEEEE--------eeCCeEEEEECCCCCCCCChHHHHHHHHH
Q 029512 93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSD-KPGLTQTINFF--------KLGTKLCLVDLPGYGFAYAKEEVKDAWEE 163 (192)
Q Consensus 93 ~~i~lvG~~n~GKStlin~L~~~~~~~~~~~-~~g~T~~~~~~--------~~~~~~~lvDtPG~~~~~~~~~~~~~~~~ 163 (192)
.+|+++|.+|||||||+|.+++.. ....+. .+....+.... .....+.+|||||.. .....+..
T Consensus 3 ~kv~ivG~~gvGKStLl~~l~~~~-~~~~~~~~~t~g~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~------~~~~~~~~ 75 (184)
T 2zej_A 3 MKLMIVGNTGSGKTTLLQQLMKTK-KSDLGMQSATVGIDVKDWPIQIRDKRKRDLVLNVWDFAGRE------EFYSTHPH 75 (184)
T ss_dssp CEEEEESCTTSSHHHHHHHHTCC------------CSEEEEEEEC---------CEEEEEEECSHH------HHHTTSHH
T ss_pred eEEEEECCCCCCHHHHHHHHhcCC-CccCCCcceeccEEeEEeeeccccCCCCceEEEEEecCCCH------HHHHhhHH
Confidence 589999999999999999999852 112221 11112222111 125578999999942 11111111
Q ss_pred HHhhhccCceeEEEEEEecCCc
Q 029512 164 LVSISYRNFWSCTCFLIYIFYT 185 (192)
Q Consensus 164 ~~~l~~~~~~~~v~~vvD~s~~ 185 (192)
+. +..+++++|.|.+.+
T Consensus 76 ~~-----~~~~~~i~v~d~~~~ 92 (184)
T 2zej_A 76 FM-----TQRALYLAVYDLSKG 92 (184)
T ss_dssp HH-----HHSEEEEEEEEGGGC
T ss_pred Hc-----cCCcEEEEEEeCCcc
Confidence 11 235777788887664
No 151
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=98.88 E-value=3.2e-09 Score=81.62 Aligned_cols=81 Identities=14% Similarity=0.040 Sum_probs=49.8
Q ss_pred CCCeEEEEecCCCcHHHHHHHHhhccCceeecCCCCceeEE---EEEe--eCCeEEEEECCCCCCCCChHHHHHHHHHHH
Q 029512 91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTI---NFFK--LGTKLCLVDLPGYGFAYAKEEVKDAWEELV 165 (192)
Q Consensus 91 ~~~~i~lvG~~n~GKStlin~L~~~~~~~~~~~~~g~T~~~---~~~~--~~~~~~lvDtPG~~~~~~~~~~~~~~~~~~ 165 (192)
...+|+++|.+|||||||+|++++.. .......++.+. .... ....+.+|||||...... + ..+
T Consensus 20 ~~~ki~vvG~~~vGKTsLi~~l~~~~---~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~---~----~~~- 88 (187)
T 3c5c_A 20 LEVNLAILGRRGAGKSALTVKFLTKR---FISEYDPNLEDTYSSEETVDHQPVHLRVMDTADLDTPRN---C----ERY- 88 (187)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHSS---CCSCCCTTCCEEEEEEEEETTEEEEEEEEECCC---CCC---T----HHH-
T ss_pred ceEEEEEECCCCCcHHHHHHHHHhCC---CCcccCCCccceeeEEEEECCEEEEEEEEECCCCCcchh---H----HHH-
Confidence 34699999999999999999999873 223333333221 1111 135688999999643211 1 111
Q ss_pred hhhccCceeEEEEEEecCCce
Q 029512 166 SISYRNFWSCTCFLIYIFYTN 186 (192)
Q Consensus 166 ~l~~~~~~~~v~~vvD~s~~~ 186 (192)
.+.+|++++|+|.++++
T Consensus 89 ----~~~~~~~ilv~d~~~~~ 105 (187)
T 3c5c_A 89 ----LNWAHAFLVVYSVDSRQ 105 (187)
T ss_dssp ----HTTCSEEEEEEETTCHH
T ss_pred ----HhhCCEEEEEEECCCHH
Confidence 23578889999987653
No 152
>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}
Probab=98.88 E-value=2.9e-10 Score=88.19 Aligned_cols=83 Identities=22% Similarity=0.131 Sum_probs=48.9
Q ss_pred CCeEEEEecCCCcHHHHHHHHhhccCceeecCCCCceeEEEEEee-C--CeEEEEECCCCCCCCChHHHHHHHHHHHhhh
Q 029512 92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKL-G--TKLCLVDLPGYGFAYAKEEVKDAWEELVSIS 168 (192)
Q Consensus 92 ~~~i~lvG~~n~GKStlin~L~~~~~~~~~~~~~g~T~~~~~~~~-~--~~~~lvDtPG~~~~~~~~~~~~~~~~~~~l~ 168 (192)
..+|+++|.+|||||||+|+|++...........+.+........ + ..+.+|||||...... .+ ..
T Consensus 33 ~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~------~~-----~~ 101 (199)
T 3l0i_B 33 LFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRT------IT-----SS 101 (199)
T ss_dssp EEEEEEECCTTSCCTTTTTSSBCCCCCCHHHHHHCCSEEEEEEEETTEEEEEEEECCTTCTTCCC------CS-----CC
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCCCCcCCcccceEEEEEEEECCEEEEEEEEECCCcHhHHH------HH-----HH
Confidence 469999999999999999999986311111112222233233322 2 4789999999532111 00 12
Q ss_pred ccCceeEEEEEEecCCc
Q 029512 169 YRNFWSCTCFLIYIFYT 185 (192)
Q Consensus 169 ~~~~~~~v~~vvD~s~~ 185 (192)
..+.+|++++|+|++++
T Consensus 102 ~~~~~d~~i~v~d~~~~ 118 (199)
T 3l0i_B 102 YYRGAHGIIVVYDVTDQ 118 (199)
T ss_dssp --CCCSEEEECC-CCCS
T ss_pred HhhcCCEEEEEEECCCH
Confidence 23456788888887765
No 153
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=98.87 E-value=5.4e-09 Score=80.34 Aligned_cols=79 Identities=15% Similarity=0.094 Sum_probs=46.8
Q ss_pred CCCCeEEEEecCCCcHHHHHHHHhhccCceeecCCCCceeEEEEEeeC--CeEEEEECCCCCCCCChHHHHHHHHHHHhh
Q 029512 90 PDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLG--TKLCLVDLPGYGFAYAKEEVKDAWEELVSI 167 (192)
Q Consensus 90 ~~~~~i~lvG~~n~GKStlin~L~~~~~~~~~~~~~g~T~~~~~~~~~--~~~~lvDtPG~~~~~~~~~~~~~~~~~~~l 167 (192)
....+|+++|.+|||||||+|.+++.......... +..........+ ..+.+|||||.... . +
T Consensus 18 ~~~~ki~ivG~~~vGKSsL~~~~~~~~~~~~~~~t-~~~~~~~~~~~~~~~~l~i~Dt~G~~~~---~--------~--- 82 (184)
T 3ihw_A 18 GPELKVGIVGNLSSGKSALVHRYLTGTYVQEESPE-GGRFKKEIVVDGQSYLLLIRDEGGPPEL---Q--------F--- 82 (184)
T ss_dssp CCEEEEEEECCTTSCHHHHHHHHHHSSCCCCCCTT-CEEEEEEEEETTEEEEEEEEECSSSCCH---H--------H---
T ss_pred CCeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCC-cceEEEEEEECCEEEEEEEEECCCChhh---h--------e---
Confidence 34569999999999999999999987321111121 111111111223 45778999996421 0 1
Q ss_pred hccCceeEEEEEEecCCc
Q 029512 168 SYRNFWSCTCFLIYIFYT 185 (192)
Q Consensus 168 ~~~~~~~~v~~vvD~s~~ 185 (192)
.+.+|++++|+|++++
T Consensus 83 --~~~~~~~i~v~d~~~~ 98 (184)
T 3ihw_A 83 --AAWVDAVVFVFSLEDE 98 (184)
T ss_dssp --HHHCSEEEEEEETTCH
T ss_pred --ecCCCEEEEEEECcCH
Confidence 1235677777776654
No 154
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}
Probab=98.87 E-value=3.1e-09 Score=89.76 Aligned_cols=78 Identities=19% Similarity=0.203 Sum_probs=49.8
Q ss_pred CeEEEEecCCCcHHHHHHHHhhccCceeecCCCCceeEEEE---EeeCCeEEEEECCCCCCCCChHHHHHHHHHHHhhhc
Q 029512 93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINF---FKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVSISY 169 (192)
Q Consensus 93 ~~i~lvG~~n~GKStlin~L~~~~~~~~~~~~~g~T~~~~~---~~~~~~~~lvDtPG~~~~~~~~~~~~~~~~~~~l~~ 169 (192)
.+|+++|.+|||||||+|+|++.. ..... + |..... ...+..+.||||||-.. ....+..+
T Consensus 166 ~kI~ivG~~~vGKSsLl~~l~~~~-~~~~~--p--T~~~~~~~~~~~~~~l~i~Dt~G~~~------~~~~~~~~----- 229 (329)
T 3o47_A 166 MRILMVGLDAAGKTTILYKLKLGE-IVTTI--P--TIGFNVETVEYKNISFTVWDVGGQDK------IRPLWRHY----- 229 (329)
T ss_dssp EEEEEEESTTSSHHHHHHHTCSSC-CEEEE--E--ETTEEEEEEEETTEEEEEEECC-----------CCSHHHH-----
T ss_pred ceEEEECCCCccHHHHHHHHhCCC-CCCcc--c--ccceEEEEEecCcEEEEEEECCCCHh------HHHHHHHH-----
Confidence 489999999999999999999873 22222 2 322222 22467899999999322 11112222
Q ss_pred cCceeEEEEEEecCCce
Q 029512 170 RNFWSCTCFLIYIFYTN 186 (192)
Q Consensus 170 ~~~~~~v~~vvD~s~~~ 186 (192)
.+.+|++++|+|+++++
T Consensus 230 ~~~ad~vilV~D~~~~~ 246 (329)
T 3o47_A 230 FQNTQGLIFVVDSNDRE 246 (329)
T ss_dssp HTTEEEEEEEEETTCSS
T ss_pred hccCCEEEEEEECCchH
Confidence 24689999999997653
No 155
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=98.87 E-value=1e-09 Score=85.27 Aligned_cols=84 Identities=14% Similarity=0.125 Sum_probs=51.5
Q ss_pred CCCeEEEEecCCCcHHHHHHHHhhccCceeecCCCCceeE---EEEEeeC--CeEEEEECCCCCCCCChHHHHHHHHHHH
Q 029512 91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQT---INFFKLG--TKLCLVDLPGYGFAYAKEEVKDAWEELV 165 (192)
Q Consensus 91 ~~~~i~lvG~~n~GKStlin~L~~~~~~~~~~~~~g~T~~---~~~~~~~--~~~~lvDtPG~~~~~~~~~~~~~~~~~~ 165 (192)
...+|+++|.+|||||||+|+|++... .....++++.+ ......+ ..+.+|||||.... ... .+..+
T Consensus 22 ~~~ki~vvG~~~vGKSsLi~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~--~~~---~~~~~- 93 (195)
T 3cbq_A 22 GIFKVMLVGESGVGKSTLAGTFGGLQG--DSAHEPENPEDTYERRIMVDKEEVTLVVYDIWEQGDA--GGW---LRDHC- 93 (195)
T ss_dssp CEEEEEEECSTTSSHHHHHHHTCCEEC--CGGGTTTSCTTEEEEEEEETTEEEEEEEECCCCCSGG--GHH---HHHHH-
T ss_pred cEEEEEEECCCCCCHHHHHHHHHhccC--CccCCCCcccceEEEEEEECCEEEEEEEEecCCCccc--hhh---hHHHh-
Confidence 456999999999999999999986531 11222333322 2222222 45788999997431 111 12222
Q ss_pred hhhccCceeEEEEEEecCCce
Q 029512 166 SISYRNFWSCTCFLIYIFYTN 186 (192)
Q Consensus 166 ~l~~~~~~~~v~~vvD~s~~~ 186 (192)
.+.+|++++|+|.++++
T Consensus 94 ----~~~~d~~ilv~d~~~~~ 110 (195)
T 3cbq_A 94 ----LQTGDAFLIVFSVTDRR 110 (195)
T ss_dssp ----HHHCSEEEEEEETTCHH
T ss_pred ----hccCCEEEEEEECCCHH
Confidence 13578999999987653
No 156
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=98.86 E-value=1.1e-08 Score=78.09 Aligned_cols=82 Identities=17% Similarity=0.112 Sum_probs=51.3
Q ss_pred CCCeEEEEecCCCcHHHHHHHHhhccCceeecC-------CCCceeEEEEEee--------CCeEEEEECCCCCCCCChH
Q 029512 91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSD-------KPGLTQTINFFKL--------GTKLCLVDLPGYGFAYAKE 155 (192)
Q Consensus 91 ~~~~i~lvG~~n~GKStlin~L~~~~~~~~~~~-------~~g~T~~~~~~~~--------~~~~~lvDtPG~~~~~~~~ 155 (192)
...+|+++|.+|||||||+|.|.+... ..... ....|....+... ...+.+|||||...-.
T Consensus 13 ~~~ki~vvG~~~~GKssL~~~l~~~~~-~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~--- 88 (198)
T 3t1o_A 13 INFKIVYYGPGLSGKTTNLKWIYSKVP-EGRKGEMVSLATEDERTLFFDFLPLDIGEVKGFKTRFHLYTVPGQVFYN--- 88 (198)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHTSC-GGGBCCCEEEECSSCEEEEEEECCSSCCCSSSCEEEEEEEECCSCCSCS---
T ss_pred cccEEEEECCCCCCHHHHHHHHHhhcc-ccccccccccccccccceeeeecccccccccCCceEEEEEeCCChHHHH---
Confidence 346999999999999999999998631 11111 1122333222211 2368999999964311
Q ss_pred HHHHHHHHHHhhhccCceeEEEEEEecCC
Q 029512 156 EVKDAWEELVSISYRNFWSCTCFLIYIFY 184 (192)
Q Consensus 156 ~~~~~~~~~~~l~~~~~~~~v~~vvD~s~ 184 (192)
..+..+ .+.+|++++|+|+++
T Consensus 89 ---~~~~~~-----~~~~d~~i~v~D~~~ 109 (198)
T 3t1o_A 89 ---ASRKLI-----LRGVDGIVFVADSAP 109 (198)
T ss_dssp ---HHHHHH-----TTTCCEEEEEEECCG
T ss_pred ---HHHHHH-----HhcCCEEEEEEECCc
Confidence 122222 357899999999984
No 157
>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}
Probab=98.84 E-value=1.8e-09 Score=98.44 Aligned_cols=83 Identities=17% Similarity=0.162 Sum_probs=58.2
Q ss_pred CCCCeEEEEecCCCcHHHHHHHHhhccCceeecC------------------------------CCCceeEEE---EEee
Q 029512 90 PDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSD------------------------------KPGLTQTIN---FFKL 136 (192)
Q Consensus 90 ~~~~~i~lvG~~n~GKStlin~L~~~~~~~~~~~------------------------------~~g~T~~~~---~~~~ 136 (192)
....+|+++|.+|+|||||+|+|++... ..... .+|+|.+.. +...
T Consensus 165 k~~lkV~ivG~~n~GKSTLin~Ll~~~~-~i~~~~i~~~~~~~~~~g~~~~~~a~~~d~~~~e~~~GiTid~~~~~~~~~ 243 (611)
T 3izq_1 165 LPHLSFVVLGHVDAGKSTLMGRLLYDLN-IVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFSTH 243 (611)
T ss_dssp CCCCEEEEECCSSSCHHHHHHHHHSCSS-CSCCHHHHHHHHHSSCSSSSCCSSSHHHHHHHHHHHTTTCCSCSCCEEECS
T ss_pred CCceEEEEEECCCCCHHHHHHHHHHhcC-CccHHHHHHHHhhhhhccccccceeeeeccchhhhhCCeeEeeeeEEEecC
Confidence 3467999999999999999999997631 11110 246676643 2334
Q ss_pred CCeEEEEECCCCCCCCChHHHHHHHHHHHhhhccCceeEEEEEEecCC
Q 029512 137 GTKLCLVDLPGYGFAYAKEEVKDAWEELVSISYRNFWSCTCFLIYIFY 184 (192)
Q Consensus 137 ~~~~~lvDtPG~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~~vvD~s~ 184 (192)
+..+.||||||... . ...+ +.....+|++++|+|++.
T Consensus 244 ~~~~~iiDTPG~e~------f---~~~~--~~~~~~aD~~llVVDa~~ 280 (611)
T 3izq_1 244 RANFTIVDAPGHRD------F---VPNA--IMGISQADMAILCVDCST 280 (611)
T ss_dssp SCEEEEEECCSSSC------H---HHHH--TTTSSCCSEEEEEEECSH
T ss_pred CceEEEEECCCCcc------c---HHHH--HHHHhhcCceEEEEECCC
Confidence 67899999999743 1 1111 455677999999999976
No 158
>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*
Probab=98.83 E-value=1e-08 Score=85.00 Aligned_cols=81 Identities=15% Similarity=-0.019 Sum_probs=53.2
Q ss_pred CCeEEEEecCCCcHHHHHHHHhhccCceeecCCCCceeEEEE---EeeCC--eEEEEECCCCCCCCChHHHHHHHHHHHh
Q 029512 92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINF---FKLGT--KLCLVDLPGYGFAYAKEEVKDAWEELVS 166 (192)
Q Consensus 92 ~~~i~lvG~~n~GKStlin~L~~~~~~~~~~~~~g~T~~~~~---~~~~~--~~~lvDtPG~~~~~~~~~~~~~~~~~~~ 166 (192)
..+|+++|.+|+|||||+|.+++.. ......+++.+... ...+. .+.+|||||..... ..+
T Consensus 155 ~~~i~i~G~~~~GKssli~~~~~~~---~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~------~~~----- 220 (332)
T 2wkq_A 155 LIKCVVVGDGAVGKTCLLISYTTNA---FPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGLEDYD------RLR----- 220 (332)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHSC---CCCSCCCCSEEEEEEEEEETTEEEEEEEEEECCCGGGT------TTG-----
T ss_pred eeEEEEECCCCCChHHHHHHHHhCC---CCcccCCcccceeEEEEEECCEEEEEEEEeCCCchhhh------HHH-----
Confidence 4699999999999999999999863 23334444443321 12233 45599999964211 011
Q ss_pred hhccCceeEEEEEEecCCce
Q 029512 167 ISYRNFWSCTCFLIYIFYTN 186 (192)
Q Consensus 167 l~~~~~~~~v~~vvD~s~~~ 186 (192)
....+.+|++++|+|++++.
T Consensus 221 ~~~~~~~d~~i~v~d~~~~~ 240 (332)
T 2wkq_A 221 PLSYPQTDVFLICFSLVSPA 240 (332)
T ss_dssp GGGCTTCSEEEEEEETTCHH
T ss_pred HHhccCCCEEEEEEeCCCHH
Confidence 22346789999999987753
No 159
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=98.83 E-value=2.5e-09 Score=97.09 Aligned_cols=60 Identities=27% Similarity=0.315 Sum_probs=42.5
Q ss_pred CCCeEEEEecCCCcHHHHHHHHhhccCce-eecCC-CCceeEEEEE------eeCCeEEEEECCCCCCC
Q 029512 91 DLPEIAFAGRSNVGKSSMLNALTRQWGVV-RTSDK-PGLTQTINFF------KLGTKLCLVDLPGYGFA 151 (192)
Q Consensus 91 ~~~~i~lvG~~n~GKStlin~L~~~~~~~-~~~~~-~g~T~~~~~~------~~~~~~~lvDtPG~~~~ 151 (192)
+...|+++|.||+|||||+|+|+|.. .+ .++.. .++|+..... ..+..+.|+||||++..
T Consensus 37 ~~~~VaivG~pnvGKStLiN~L~g~~-~~~~~~~tt~~~T~gi~~~~~~~~~~~~~~i~LiDTpGi~~~ 104 (592)
T 1f5n_A 37 PMVVVAIVGLYRTGKSYLMNKLAGKK-KGFSLGSTVQSHTKGIWMWCVPHPKKPGHILVLLDTEGLGDV 104 (592)
T ss_dssp BEEEEEEEEBTTSSHHHHHHHHTTCS-SCSCCCCSSSCCCCSEEEEEEECSSSTTCEEEEEEECCBCCG
T ss_pred CCcEEEEECCCCCCHHHHHHhHcCCC-CccccCCCCCCceeEEEEeecccccCCCceEEEecCCCcCcc
Confidence 45689999999999999999999974 22 22222 2445544322 13678999999999863
No 160
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}
Probab=98.32 E-value=4.3e-10 Score=87.43 Aligned_cols=82 Identities=12% Similarity=-0.038 Sum_probs=50.7
Q ss_pred CCCeEEEEecCCCcHHHHHHHHhhccCceeecCCCCceeEEE---EEe--eCCeEEEEECCCCCCCCChHHHHHHHHHHH
Q 029512 91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTIN---FFK--LGTKLCLVDLPGYGFAYAKEEVKDAWEELV 165 (192)
Q Consensus 91 ~~~~i~lvG~~n~GKStlin~L~~~~~~~~~~~~~g~T~~~~---~~~--~~~~~~lvDtPG~~~~~~~~~~~~~~~~~~ 165 (192)
...+|+++|.+|||||||+|+|++.. .......++.+.. ... ....+.+|||||.... ...+..
T Consensus 29 ~~~ki~v~G~~~~GKSsli~~l~~~~---~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~------~~~~~~-- 97 (204)
T 3th5_A 29 QAIKCVVVGDGAVGKTCLLISYTTNA---FPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDY------DRLRPL-- 97 (204)
Confidence 45799999999999999999999763 1222222222211 111 2345669999995321 111211
Q ss_pred hhhccCceeEEEEEEecCCce
Q 029512 166 SISYRNFWSCTCFLIYIFYTN 186 (192)
Q Consensus 166 ~l~~~~~~~~v~~vvD~s~~~ 186 (192)
..+.+|++++|+|++++.
T Consensus 98 ---~~~~~d~iilv~D~~~~~ 115 (204)
T 3th5_A 98 ---SYPQTDVFLICFSLVSPA 115 (204)
Confidence 234678899999987654
No 161
>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*
Probab=98.80 E-value=4.7e-09 Score=92.94 Aligned_cols=83 Identities=16% Similarity=0.113 Sum_probs=54.3
Q ss_pred CCeEEEEecCCCcHHHHHHHHhhccC-----------------------------ceeecCCCCceeEEEEE---eeCCe
Q 029512 92 LPEIAFAGRSNVGKSSMLNALTRQWG-----------------------------VVRTSDKPGLTQTINFF---KLGTK 139 (192)
Q Consensus 92 ~~~i~lvG~~n~GKStlin~L~~~~~-----------------------------~~~~~~~~g~T~~~~~~---~~~~~ 139 (192)
..+|+++|.+|+|||||+|+|++... ........|+|.+.... ..+..
T Consensus 33 ~~ki~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~ 112 (483)
T 3p26_A 33 HLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFSTHRAN 112 (483)
T ss_dssp EEEEEEESCGGGTHHHHHHHHHHHTTSSCHHHHHHHCC------------------------CCSSCCCCEEEEECSSCE
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhcCCccHHHHHHHHHHHHhcCCCcchhhhhhccchhHhhcCcceEeeeEEEecCCce
Confidence 46999999999999999999986511 01111234666654332 24678
Q ss_pred EEEEECCCCCCCCChHHHHHHHHHHHhhhccCceeEEEEEEecCCc
Q 029512 140 LCLVDLPGYGFAYAKEEVKDAWEELVSISYRNFWSCTCFLIYIFYT 185 (192)
Q Consensus 140 ~~lvDtPG~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~~vvD~s~~ 185 (192)
+.||||||... ....+ ......+|++++|+|++..
T Consensus 113 ~~iiDTPG~~~------f~~~~-----~~~~~~aD~~llVvDa~~g 147 (483)
T 3p26_A 113 FTIVDAPGHRD------FVPNA-----IMGISQADMAILCVDCSTN 147 (483)
T ss_dssp EEEECCCCCGG------GHHHH-----HHHHTTCSEEEEEEECCC-
T ss_pred EEEEECCCcHH------HHHHH-----HHhhhhCCEEEEEEECCCC
Confidence 99999999732 11111 2234568999999999874
No 162
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=98.78 E-value=5.5e-09 Score=91.19 Aligned_cols=85 Identities=20% Similarity=0.260 Sum_probs=59.0
Q ss_pred CCeEEEEecCCCcHHHHHHHHhhccCceeecCCCCceeEEEEEe--e--CCeEEEEECCCCCCCCCh-HHHHHHHHHHHh
Q 029512 92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFK--L--GTKLCLVDLPGYGFAYAK-EEVKDAWEELVS 166 (192)
Q Consensus 92 ~~~i~lvG~~n~GKStlin~L~~~~~~~~~~~~~g~T~~~~~~~--~--~~~~~lvDtPG~~~~~~~-~~~~~~~~~~~~ 166 (192)
...|+|+|++|||||||+|+|++.. ..+++.+++|..+.... . ...+.++||||+...... ..+...+
T Consensus 157 g~~VgLVG~~gAGKSTLL~~Lsg~~--~~i~~~~ftTl~p~~G~V~~~~~~~~~l~DtpGli~~a~~~~~L~~~f----- 229 (416)
T 1udx_A 157 IADVGLVGYPNAGKSSLLAAMTRAH--PKIAPYPFTTLSPNLGVVEVSEEERFTLADIPGIIEGASEGKGLGLEF----- 229 (416)
T ss_dssp SCSEEEECCGGGCHHHHHHHHCSSC--CEECCCTTCSSCCEEEEEECSSSCEEEEEECCCCCCCGGGSCCSCHHH-----
T ss_pred CCEEEEECCCCCcHHHHHHHHHcCC--ccccCcccceecceeeEEEecCcceEEEEeccccccchhhhhhhhHHH-----
Confidence 4579999999999999999999974 45677888877655332 2 267999999998642110 0011111
Q ss_pred hhccCceeEEEEEEecC
Q 029512 167 ISYRNFWSCTCFLIYIF 183 (192)
Q Consensus 167 l~~~~~~~~v~~vvD~s 183 (192)
+.+...++.+++++|++
T Consensus 230 l~~~era~~lL~vvDls 246 (416)
T 1udx_A 230 LRHIARTRVLLYVLDAA 246 (416)
T ss_dssp HHHHTSSSEEEEEEETT
T ss_pred HHHHHHHHhhhEEeCCc
Confidence 23345678999999986
No 163
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=98.76 E-value=3e-08 Score=76.80 Aligned_cols=57 Identities=26% Similarity=0.318 Sum_probs=36.0
Q ss_pred CCeEEEEecCCCcHHHHHHHHhhccCceeecCCCCceeEEEEEe-eC--CeEEEEECCCC
Q 029512 92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFK-LG--TKLCLVDLPGY 148 (192)
Q Consensus 92 ~~~i~lvG~~n~GKStlin~L~~~~~~~~~~~~~g~T~~~~~~~-~~--~~~~lvDtPG~ 148 (192)
..+|+++|++|||||||+|.|++........+..+.+....... .+ ..+.+|||||.
T Consensus 5 ~~kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~ 64 (199)
T 2f9l_A 5 LFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQ 64 (199)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHSCCCC---CCCSCEEEEEEEEETTEEEEEEEEECSSG
T ss_pred eEEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCc
Confidence 35899999999999999999999732111122223322222222 23 35778999994
No 164
>1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=98.75 E-value=2.5e-08 Score=86.42 Aligned_cols=84 Identities=20% Similarity=0.321 Sum_probs=53.7
Q ss_pred CCCeEEEEecCCCcHHHHHHHHhhccC-ceeecCCCCceeEEEEEe--------------------------eCCeEEEE
Q 029512 91 DLPEIAFAGRSNVGKSSMLNALTRQWG-VVRTSDKPGLTQTINFFK--------------------------LGTKLCLV 143 (192)
Q Consensus 91 ~~~~i~lvG~~n~GKStlin~L~~~~~-~~~~~~~~g~T~~~~~~~--------------------------~~~~~~lv 143 (192)
...+|+++|.+|+|||||+|+|++... .......+|.|.+..+.. ....+.+|
T Consensus 7 ~~~~I~iiG~~d~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~i~ii 86 (408)
T 1s0u_A 7 AEVNIGMVGHVDHGKTSLTKALTGVWTDRHSEELRRGISIRLGYADCEIRKCPQCGTYTTKPRCPNCLAETEFLRRVSFV 86 (408)
T ss_dssp CCEEEEEESCTTSSHHHHHHHHHSCCCCC-------CCCCCCEEEEEEEEECTTTCCEESSSBCTTSCCBCEEEEEEEEE
T ss_pred CceEEEEEcCCCCCHHHHHHHHhCCccccCcccccCCcEEEecccccccccccccccccccccccccCcccccccEEEEE
Confidence 457999999999999999999997531 011122345566433211 01579999
Q ss_pred ECCCCCCCCChHHHHHHHHHHHhhhccCceeEEEEEEecCCc
Q 029512 144 DLPGYGFAYAKEEVKDAWEELVSISYRNFWSCTCFLIYIFYT 185 (192)
Q Consensus 144 DtPG~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~~vvD~s~~ 185 (192)
||||. +.... .+ +.....+|++++|+|+++.
T Consensus 87 DtPGh------~~f~~---~~--~~~~~~~D~~ilVvda~~g 117 (408)
T 1s0u_A 87 DSPGH------ETLMA---TM--LSGASLMDGAILVIAANEP 117 (408)
T ss_dssp ECSSH------HHHHH---HH--HTTCSCCSEEEEEEETTSC
T ss_pred ECCCH------HHHHH---HH--HHhHhhCCEEEEEEECCCC
Confidence 99993 22111 12 4556788999999999853
No 165
>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus}
Probab=98.75 E-value=1.3e-09 Score=97.92 Aligned_cols=81 Identities=22% Similarity=0.315 Sum_probs=57.6
Q ss_pred CCCeEEEEecCCCcHHHHHHHHhhccCceeecCCCCceeEEEEEe----eCCeEEEEECCCCCCCCChHHHHHHHHHHHh
Q 029512 91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFK----LGTKLCLVDLPGYGFAYAKEEVKDAWEELVS 166 (192)
Q Consensus 91 ~~~~i~lvG~~n~GKStlin~L~~~~~~~~~~~~~g~T~~~~~~~----~~~~~~lvDtPG~~~~~~~~~~~~~~~~~~~ 166 (192)
..|+|+++|.+|+|||||+|+|++.. ......+|+|++...+. .+..+.+|||||...-.. +.
T Consensus 3 r~pkV~IvG~~~vGKTSLl~~L~~~~--~~~~~~~giT~~i~~~~v~~~~g~~i~~iDTPGhe~f~~----------~~- 69 (537)
T 3izy_P 3 RSPVVTIMGHVDHGKTTLLDKLRKTQ--VAAMEAGGITQHIGAFLVSLPSGEKITFLDTPGHAAFSA----------MR- 69 (537)
T ss_dssp CCCBCEEEESTTTTHHHHHHHHHHHH--HHHSSSCCBCCCTTSCCBCSSCSSCCBCEECSSSCCTTT----------SB-
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC--cccccCCceeEEEeEEEEEeCCCCEEEEEECCChHHHHH----------HH-
Confidence 45799999999999999999999873 22335667887764332 356899999999532110 00
Q ss_pred hhccCceeEEEEEEecCC
Q 029512 167 ISYRNFWSCTCFLIYIFY 184 (192)
Q Consensus 167 l~~~~~~~~v~~vvD~s~ 184 (192)
......+|++++|+|+++
T Consensus 70 ~~~~~~aD~vILVVDa~d 87 (537)
T 3izy_P 70 ARGTQVTDIVILVVAADD 87 (537)
T ss_dssp BSSSBSBSSCEEECBSSS
T ss_pred HHHHccCCEEEEEEECCC
Confidence 234466889999999876
No 166
>1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A*
Probab=98.75 E-value=1.6e-08 Score=87.70 Aligned_cols=83 Identities=20% Similarity=0.340 Sum_probs=54.3
Q ss_pred CCCeEEEEecCCCcHHHHHHHHhhccCc-eeecCCCCceeEEEEEe--------------------------eCCeEEEE
Q 029512 91 DLPEIAFAGRSNVGKSSMLNALTRQWGV-VRTSDKPGLTQTINFFK--------------------------LGTKLCLV 143 (192)
Q Consensus 91 ~~~~i~lvG~~n~GKStlin~L~~~~~~-~~~~~~~g~T~~~~~~~--------------------------~~~~~~lv 143 (192)
...+|+++|.+|+|||||+|+|++.... ......+|.|.+..+.. ....+.+|
T Consensus 9 ~~~~I~iiG~~~~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~i~ii 88 (410)
T 1kk1_A 9 AEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELRRGITIKIGFADAEIRRCPNCGRYSTSPVCPYCGHETEFVRRVSFI 88 (410)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHTCCCC--CGGGGSCSSSCCEEEEEEEEECTTTCCEESSSBCTTTCCBCEEEEEEEEE
T ss_pred CccEEEEECCCCCCHHHHHHHHhCCccccChhhhcCCcEEEEeeeeeecccccccccccccccccccCcccccccEEEEE
Confidence 4568999999999999999999975310 11112345665433211 01579999
Q ss_pred ECCCCCCCCChHHHHHHHHHHHhhhccCceeEEEEEEecCC
Q 029512 144 DLPGYGFAYAKEEVKDAWEELVSISYRNFWSCTCFLIYIFY 184 (192)
Q Consensus 144 DtPG~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~~vvD~s~ 184 (192)
||||. +... ..+ +.....+|.+++|+|+++
T Consensus 89 DtPGh------~~f~---~~~--~~~~~~~D~~ilVvda~~ 118 (410)
T 1kk1_A 89 DAPGH------EALM---TTM--LAGASLMDGAILVIAANE 118 (410)
T ss_dssp ECSSH------HHHH---HHH--HHCGGGCSEEEEEEETTS
T ss_pred ECCCh------HHHH---HHH--HhhhhhCCEEEEEEECCC
Confidence 99993 2111 122 445567899999999985
No 167
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=98.73 E-value=6e-08 Score=74.84 Aligned_cols=58 Identities=26% Similarity=0.322 Sum_probs=37.0
Q ss_pred CCeEEEEecCCCcHHHHHHHHhhccCceeecCCCCceeEEEEEe-eCC--eEEEEECCCCC
Q 029512 92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFK-LGT--KLCLVDLPGYG 149 (192)
Q Consensus 92 ~~~i~lvG~~n~GKStlin~L~~~~~~~~~~~~~g~T~~~~~~~-~~~--~~~lvDtPG~~ 149 (192)
..+|+++|++|||||||+|.|++........+..+.+....... .+. .+.++||||..
T Consensus 29 ~~kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~ 89 (191)
T 1oix_A 29 LFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLE 89 (191)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEETTEEEEEEEEEECSCC
T ss_pred ceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEECCCCc
Confidence 46899999999999999999999742112222223222222222 233 45679999964
No 168
>3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii}
Probab=98.72 E-value=2e-08 Score=90.15 Aligned_cols=83 Identities=18% Similarity=0.173 Sum_probs=53.2
Q ss_pred CCeEEEEecCCCcHHHHHHHHhhccCce--------------eecC------CCCcee---EEEEEeeCCeEEEEECCCC
Q 029512 92 LPEIAFAGRSNVGKSSMLNALTRQWGVV--------------RTSD------KPGLTQ---TINFFKLGTKLCLVDLPGY 148 (192)
Q Consensus 92 ~~~i~lvG~~n~GKStlin~L~~~~~~~--------------~~~~------~~g~T~---~~~~~~~~~~~~lvDtPG~ 148 (192)
.++|+|+|.+|+|||||+|+|+...... .+.+ ..|+|. ...+...+..+.||||||.
T Consensus 13 ~r~IaIiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~i~liDTPG~ 92 (528)
T 3tr5_A 13 RRTFAIISHPDAGKTTLTEKLLLFGGAIQLAGTIKSRKAARHATSDWMELEKQRGISVTTSVMQFPYKDYLINLLDTPGH 92 (528)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHHTTCHHHHHHHHTC----CCHHHHHHHHHHHCCSSSSSEEEEEETTEEEEEECCCCS
T ss_pred CCEEEEECCCCCcHHHHHHHHHhhcCCcccceeeeccccccceecccchhhhcCCeeEEEeEEEEEeCCEEEEEEECCCc
Confidence 4599999999999999999997321000 0000 123332 2334445788999999997
Q ss_pred CCCCChHHHHHHHHHHHhhhccCceeEEEEEEecCCc
Q 029512 149 GFAYAKEEVKDAWEELVSISYRNFWSCTCFLIYIFYT 185 (192)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~l~~~~~~~~v~~vvD~s~~ 185 (192)
.+-. .+ + ....+.+|++++|+|++..
T Consensus 93 ~df~-~~-----~-----~~~l~~aD~allVvDa~~g 118 (528)
T 3tr5_A 93 ADFT-ED-----T-----YRTLTAVDSALMVIDAAKG 118 (528)
T ss_dssp TTCC-HH-----H-----HHGGGGCSEEEEEEETTTC
T ss_pred hhHH-HH-----H-----HHHHHhCCEEEEEEeCCCC
Confidence 5421 11 1 2234578999999999763
No 169
>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*
Probab=98.72 E-value=1.4e-08 Score=87.83 Aligned_cols=84 Identities=14% Similarity=0.219 Sum_probs=51.0
Q ss_pred CCCCeEEEEecCCCcHHHHHHHHhhccCceeecCCCCcee--------------EEEE--------EeeCCeEEEEECCC
Q 029512 90 PDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQ--------------TINF--------FKLGTKLCLVDLPG 147 (192)
Q Consensus 90 ~~~~~i~lvG~~n~GKStlin~L~~~~~~~~~~~~~g~T~--------------~~~~--------~~~~~~~~lvDtPG 147 (192)
....+|+++|.+|+|||||+|+|++.. ..........|. +... ......+.++||||
T Consensus 6 ~~~~~I~vvG~~~~GKSTLi~~L~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiDtPG 84 (403)
T 3sjy_A 6 QPEVNIGVVGHVDHGKTTLVQAITGIW-TSKKLGYAETNIGVCESCKKPEAYVTEPSCKSCGSDDEPKFLRRISFIDAPG 84 (403)
T ss_dssp CCCCEEEEECSTTSSHHHHHHHHHSCC-CCSSSEEEEEEEEECTTSCTTTTEESSSCCGGGTCCSCCEEEEEEEEEECCC
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhCcc-cccccCccccceeeccccccccceecccccccccccccccccceEEEEECCC
Confidence 456799999999999999999999842 111001101110 0000 00125789999999
Q ss_pred CCCCCChHHHHHHHHHHHhhhccCceeEEEEEEecCCc
Q 029512 148 YGFAYAKEEVKDAWEELVSISYRNFWSCTCFLIYIFYT 185 (192)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~~vvD~s~~ 185 (192)
... ....+ +.....+|++++|+|++..
T Consensus 85 h~~------~~~~~-----~~~~~~~D~~ilVvda~~~ 111 (403)
T 3sjy_A 85 HEV------LMATM-----LSGAALMDGAILVVAANEP 111 (403)
T ss_dssp CGG------GHHHH-----HHHHTTCSEEEEEEETTSC
T ss_pred cHH------HHHHH-----HHHHhhCCEEEEEEECCCC
Confidence 421 11111 2334568999999999875
No 170
>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli}
Probab=98.71 E-value=4.6e-09 Score=93.71 Aligned_cols=81 Identities=17% Similarity=0.224 Sum_probs=57.0
Q ss_pred CCCeEEEEecCCCcHHHHHHHHhhccCceeecCCCCceeEEEEEe---eCCeEEEEECCCCCCCCChHHHHHHHHHHHhh
Q 029512 91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFK---LGTKLCLVDLPGYGFAYAKEEVKDAWEELVSI 167 (192)
Q Consensus 91 ~~~~i~lvG~~n~GKStlin~L~~~~~~~~~~~~~g~T~~~~~~~---~~~~~~lvDtPG~~~~~~~~~~~~~~~~~~~l 167 (192)
..++|+++|.+|+|||||+++|++.. ...+..+|.|++...+. .+..+.+|||||...-... + .
T Consensus 3 R~~~V~IvGhvd~GKTTLl~~L~~~~--v~~~e~~GIT~~i~~~~v~~~~~~i~~iDTPGhe~f~~~------~-----~ 69 (501)
T 1zo1_I 3 RAPVVTIMGHVDHGKTSLLEYIRSTK--VASGEAGGITQHIGAYHVETENGMITFLDTPGHAAFTSM------R-----A 69 (501)
T ss_dssp CCCCEEEEESTTSSSHHHHHHHHHHH--HSBTTBCCCCCCSSCCCCCTTSSCCCEECCCTTTCCTTS------B-----C
T ss_pred CCeEEEEECCCCCCHHHHHHHHHcCC--CccccCCCeeEeEEEEEEEECCEEEEEEECCCcHHHHHH------H-----H
Confidence 46799999999999999999999863 22334456776653322 3678999999996431110 0 2
Q ss_pred hccCceeEEEEEEecCC
Q 029512 168 SYRNFWSCTCFLIYIFY 184 (192)
Q Consensus 168 ~~~~~~~~v~~vvD~s~ 184 (192)
.....+|.+++|+|+.+
T Consensus 70 ~~~~~aD~aILVVda~~ 86 (501)
T 1zo1_I 70 RGAQATDIVVLVVAADD 86 (501)
T ss_dssp SSSBSCSSEEEEEETTT
T ss_pred HHHhhCCEEEEEeeccc
Confidence 34567899999999876
No 171
>1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*
Probab=98.71 E-value=1.6e-08 Score=89.65 Aligned_cols=82 Identities=22% Similarity=0.258 Sum_probs=50.6
Q ss_pred CCeEEEEecCCCcHHHHHHHHhhccC---c--eeecCCCCceeEEEE---EeeCCeEEEEECCCCCCCCChHHHHHHHHH
Q 029512 92 LPEIAFAGRSNVGKSSMLNALTRQWG---V--VRTSDKPGLTQTINF---FKLGTKLCLVDLPGYGFAYAKEEVKDAWEE 163 (192)
Q Consensus 92 ~~~i~lvG~~n~GKStlin~L~~~~~---~--~~~~~~~g~T~~~~~---~~~~~~~~lvDtPG~~~~~~~~~~~~~~~~ 163 (192)
.++|+++|.+|+|||||+|+|++... . ......+|.|.+..+ ...+..+.+|||||. +.....+
T Consensus 19 ~~~I~iiG~~d~GKSTLi~~L~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~i~iiDtPGh------~~~~~~~-- 90 (482)
T 1wb1_A 19 NINLGIFGHIDHGKTTLSKVLTEIASTSAHDKLPESQKRGITIDIGFSAFKLENYRITLVDAPGH------ADLIRAV-- 90 (482)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHTTC--------------------CCCEEEETTEEEEECCCSSH------HHHHHHH--
T ss_pred CCEEEEECCCCChHHHHHHHHHCCCcccccccccccccCccEEecceEEEEECCEEEEEEECCCh------HHHHHHH--
Confidence 46899999999999999999998631 1 122344567776532 224678999999994 2111111
Q ss_pred HHhhhccCceeEEEEEEecCC
Q 029512 164 LVSISYRNFWSCTCFLIYIFY 184 (192)
Q Consensus 164 ~~~l~~~~~~~~v~~vvD~s~ 184 (192)
......+|++++|+|+++
T Consensus 91 ---~~~~~~aD~~ilVvda~~ 108 (482)
T 1wb1_A 91 ---VSAADIIDLALIVVDAKE 108 (482)
T ss_dssp ---HHHTTSCCEEEEEEETTT
T ss_pred ---HHHHhhCCEEEEEEecCC
Confidence 344567899999999976
No 172
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=98.70 E-value=1.8e-08 Score=80.21 Aligned_cols=83 Identities=16% Similarity=0.070 Sum_probs=46.8
Q ss_pred CCeEEEEecCCCcHHHHHHHHhhccCceeecCCCCceeEEEEEee---CCeEEEEECCCCCCCCChHHHHHHHHHHHhhh
Q 029512 92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKL---GTKLCLVDLPGYGFAYAKEEVKDAWEELVSIS 168 (192)
Q Consensus 92 ~~~i~lvG~~n~GKStlin~L~~~~~~~~~~~~~g~T~~~~~~~~---~~~~~lvDtPG~~~~~~~~~~~~~~~~~~~l~ 168 (192)
..+|+++|.+|||||||++.++.........++.|.......... ...+.||||+|-..-. ..+..+
T Consensus 13 ~~KivlvGd~~VGKTsLi~r~~~~~f~~~~~~Tig~d~~~k~~~~~~~~v~l~iwDtaGqe~~~------~l~~~~---- 82 (216)
T 4dkx_A 13 KFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGLERFR------SLIPSY---- 82 (216)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHSCCC----------CEEEEEECSSCEEEEEEECCSCTTTCG------GGHHHH----
T ss_pred cEEEEEECcCCcCHHHHHHHHHhCCCCCCcCCccceEEEEEEEEecceEEEEEEEECCCchhhh------hHHHHH----
Confidence 458999999999999999999976321222222232211122222 3467899999953211 111111
Q ss_pred ccCceeEEEEEEecCCc
Q 029512 169 YRNFWSCTCFLIYIFYT 185 (192)
Q Consensus 169 ~~~~~~~v~~vvD~s~~ 185 (192)
.+.++++++|.|...+
T Consensus 83 -~~~a~~~ilv~di~~~ 98 (216)
T 4dkx_A 83 -IRDSAAAVVVYDITNV 98 (216)
T ss_dssp -HTTCSEEEEEEETTCH
T ss_pred -hccccEEEEEeecchh
Confidence 2456778888877654
No 173
>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}
Probab=98.70 E-value=1e-09 Score=99.78 Aligned_cols=82 Identities=16% Similarity=0.125 Sum_probs=38.8
Q ss_pred CCCeEEEEecCCCcHHHHHHHHhhccCceee------------------------------cCCCCceeEEEEEe---eC
Q 029512 91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRT------------------------------SDKPGLTQTINFFK---LG 137 (192)
Q Consensus 91 ~~~~i~lvG~~n~GKStlin~L~~~~~~~~~------------------------------~~~~g~T~~~~~~~---~~ 137 (192)
...+|+++|.+|+|||||+|+|++... ... ...+|+|.+..... .+
T Consensus 176 ~~~~I~iiG~~d~GKSTLi~~Ll~~~~-~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~GiTid~~~~~~~~~~ 254 (592)
T 3mca_A 176 PVVHLVVTGHVDSGKSTMLGRIMFELG-EINSRSMQKLHNEAANSGKGSFSYAWLLDTTEEERARGVTMDVASTTFESDK 254 (592)
T ss_dssp CEEEEEEECCSSSTHHHHHHHHHHHHH-CC--------------------------------------------------
T ss_pred CccEEEEEcCCCCCHHHHHHHHHHHcC-CcchHHHHHHHHhHhhcCCcchhhhhhhccchhhhcCCeeEEeeEEEEEeCC
Confidence 445899999999999999999975310 010 01356777765433 35
Q ss_pred CeEEEEECCCCCCCCChHHHHHHHHHHHhhhccCceeEEEEEEecCC
Q 029512 138 TKLCLVDLPGYGFAYAKEEVKDAWEELVSISYRNFWSCTCFLIYIFY 184 (192)
Q Consensus 138 ~~~~lvDtPG~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~~vvD~s~ 184 (192)
..+.||||||...-... . +.....+|++++|+|++.
T Consensus 255 ~~i~iiDTPGh~~f~~~-----~------~~~~~~aD~alLVVDa~~ 290 (592)
T 3mca_A 255 KIYEIGDAPGHRDFISG-----M------IAGASSADFAVLVVDSSQ 290 (592)
T ss_dssp ----CCEEESSSEEEEE-----C------CC-------CCSEEEEEE
T ss_pred eEEEEEECCChHHHHHH-----H------HHHHhhCCEEEEEEECCC
Confidence 78999999997531100 0 233456789999999875
No 174
>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A*
Probab=98.69 E-value=4.7e-08 Score=84.45 Aligned_cols=81 Identities=15% Similarity=0.218 Sum_probs=54.8
Q ss_pred CeEEEEecCCCcHHHHHHHHhhcc---Ccee-----------ecCCCCceeEEEEEe---eCCeEEEEECCCCCCCCChH
Q 029512 93 PEIAFAGRSNVGKSSMLNALTRQW---GVVR-----------TSDKPGLTQTINFFK---LGTKLCLVDLPGYGFAYAKE 155 (192)
Q Consensus 93 ~~i~lvG~~n~GKStlin~L~~~~---~~~~-----------~~~~~g~T~~~~~~~---~~~~~~lvDtPG~~~~~~~~ 155 (192)
.+|+++|.+|+|||||+|+|++.. .... .....|.|.+..... .+..+.+|||||..
T Consensus 4 ~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~~~iiDtpG~~------ 77 (397)
T 1d2e_A 4 VNVGTIGHVDHGKTTLTAAITKILAEGGGAKFKKYEEIDNAPEERARGITINAAHVEYSTAARHYAHTDCPGHA------ 77 (397)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHHHHTTSBCCCCHHHHHSCCEEEETTEEEECEEEEEECSSCEEEEEECSSHH------
T ss_pred EEEEEEeCCCCCHHHHHHHHhChhhhcCccccchhhhhhcCHHHHhcCcEEEeeeEEeccCCeEEEEEECCChH------
Confidence 589999999999999999999741 0000 011346676654322 35789999999952
Q ss_pred HHHHHHHHHHhhhccCceeEEEEEEecCC
Q 029512 156 EVKDAWEELVSISYRNFWSCTCFLIYIFY 184 (192)
Q Consensus 156 ~~~~~~~~~~~l~~~~~~~~v~~vvD~s~ 184 (192)
.... .+ ......+|++++|+|+++
T Consensus 78 ~f~~---~~--~~~~~~aD~~ilVvda~~ 101 (397)
T 1d2e_A 78 DYVK---NM--ITGTAPLDGCILVVAAND 101 (397)
T ss_dssp HHHH---HH--HHTSSCCSEEEEEEETTT
T ss_pred HHHH---HH--HhhHhhCCEEEEEEECCC
Confidence 1111 11 344568899999999986
No 175
>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=98.67 E-value=3.3e-08 Score=86.34 Aligned_cols=83 Identities=19% Similarity=0.249 Sum_probs=51.8
Q ss_pred CCeEEEEecCCCcHHHHHHHHhhccCc---------eeecCC----------------------CCceeEEEEEe---eC
Q 029512 92 LPEIAFAGRSNVGKSSMLNALTRQWGV---------VRTSDK----------------------PGLTQTINFFK---LG 137 (192)
Q Consensus 92 ~~~i~lvG~~n~GKStlin~L~~~~~~---------~~~~~~----------------------~g~T~~~~~~~---~~ 137 (192)
..+|+++|.+|+|||||+|+|++.... ...+.. .|.|.+..+.. .+
T Consensus 24 ~~~i~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~i~~~s~~~gt~~~~~~~~~~~d~~~~E~~rGiTi~~~~~~~~~~~ 103 (434)
T 1zun_B 24 MLRFLTCGNVDDGKSTLIGRLLHDSKMIYEDHLEAITRDSKKSGTTGDDVDLALLVDGLQAEREQGITIDVAYRYFSTAK 103 (434)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHHTTCC------------------CCC--CHHHHHHHHC-----CCCCCEEEEEECSS
T ss_pred ceEEEEEECCCCCHHHHHHHHHhhcCCCchhhhhhhhhhhhccCccccchhhhhhhccChhHHHCCcEEEeeeeEeecCC
Confidence 468999999999999999999875310 111111 23444433222 35
Q ss_pred CeEEEEECCCCCCCCChHHHHHHHHHHHhhhccCceeEEEEEEecCCc
Q 029512 138 TKLCLVDLPGYGFAYAKEEVKDAWEELVSISYRNFWSCTCFLIYIFYT 185 (192)
Q Consensus 138 ~~~~lvDtPG~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~~vvD~s~~ 185 (192)
..+.+|||||... ....+ ......+|++++|+|+++.
T Consensus 104 ~~~~iiDtpGh~~------f~~~~-----~~~~~~aD~~ilVvDa~~g 140 (434)
T 1zun_B 104 RKFIIADTPGHEQ------YTRNM-----ATGASTCDLAIILVDARYG 140 (434)
T ss_dssp EEEEEEECCCSGG------GHHHH-----HHHHTTCSEEEEEEETTTC
T ss_pred ceEEEEECCChHH------HHHHH-----HHHHhhCCEEEEEEECCCC
Confidence 6799999999532 11111 1234678999999999763
No 176
>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...
Probab=98.65 E-value=1.1e-08 Score=88.50 Aligned_cols=84 Identities=18% Similarity=0.127 Sum_probs=54.6
Q ss_pred CCCeEEEEecCCCcHHHHHHHHhhcc--C-----cee--ec------CCCCceeEEEE---EeeCCeEEEEECCCCCCCC
Q 029512 91 DLPEIAFAGRSNVGKSSMLNALTRQW--G-----VVR--TS------DKPGLTQTINF---FKLGTKLCLVDLPGYGFAY 152 (192)
Q Consensus 91 ~~~~i~lvG~~n~GKStlin~L~~~~--~-----~~~--~~------~~~g~T~~~~~---~~~~~~~~lvDtPG~~~~~ 152 (192)
...+|+++|.+|+|||||+|+|++.. . ... .. ...|.|.+... ...+..+.+|||||...
T Consensus 10 ~~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~~~iiDtpG~~~-- 87 (405)
T 2c78_A 10 PHVNVGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDIDKAPEERARGITINTAHVEYETAKRHYSHVDCPGHAD-- 87 (405)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHHHHHSCTTSCCCCHHHHSCSHHHHHHTCCCSCEEEEEECSSCEEEEEECCCSGG--
T ss_pred CeEEEEEEcCCCCCHHHHHHHHHhhhhhcCccccccchhhccCCHHHHHcCCCEEeeeeEeccCCeEEEEEECCChHH--
Confidence 34699999999999999999999831 0 000 00 12355554332 22367899999999642
Q ss_pred ChHHHHHHHHHHHhhhccCceeEEEEEEecCCc
Q 029512 153 AKEEVKDAWEELVSISYRNFWSCTCFLIYIFYT 185 (192)
Q Consensus 153 ~~~~~~~~~~~~~~l~~~~~~~~v~~vvD~s~~ 185 (192)
..... ......+|++++|+|+++.
T Consensus 88 ---f~~~~------~~~~~~aD~~ilVvda~~g 111 (405)
T 2c78_A 88 ---YIKNM------ITGAAQMDGAILVVSAADG 111 (405)
T ss_dssp ---GHHHH------HHHHTTCSSEEEEEETTTC
T ss_pred ---HHHHH------HHHHHHCCEEEEEEECCCC
Confidence 11111 2234578999999999764
No 177
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=98.63 E-value=7.4e-08 Score=76.33 Aligned_cols=83 Identities=18% Similarity=0.117 Sum_probs=48.6
Q ss_pred CCeEEEEecCCCcHHHHHHHHhhccCceeecCC--CCcee-EEEEEeeC--CeEEEEECCCCCCCCChHHHHHHHHHHHh
Q 029512 92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDK--PGLTQ-TINFFKLG--TKLCLVDLPGYGFAYAKEEVKDAWEELVS 166 (192)
Q Consensus 92 ~~~i~lvG~~n~GKStlin~L~~~~~~~~~~~~--~g~T~-~~~~~~~~--~~~~lvDtPG~~~~~~~~~~~~~~~~~~~ 166 (192)
..+|+++|.+|||||||+|++++.. ...+... .|.+. .......+ ..+.++||+|... . .. .+ .
T Consensus 37 ~~kVvlvG~~~vGKSSLl~r~~~~~-~~~~~~~~~~g~d~~~~~i~~~~~~~~l~~~Dt~g~~~----~--~~---~l-~ 105 (211)
T 2g3y_A 37 YYRVVLIGEQGVGKSTLANIFAGVH-DSMDSDCEVLGEDTYERTLMVDGESATIILLDMWENKG----E--NE---WL-H 105 (211)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHCCC-CTTCCC---CCTTEEEEEEEETTEEEEEEEECCTTTTH----H--HH---HH-H
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCC-CCCCCcCCccceeeEEEEEEECCeeeEEEEeecCCCcc----h--hh---hH-H
Confidence 4689999999999999999999752 1222222 23222 21222223 3467899998431 0 11 11 1
Q ss_pred hhccCceeEEEEEEecCCc
Q 029512 167 ISYRNFWSCTCFLIYIFYT 185 (192)
Q Consensus 167 l~~~~~~~~v~~vvD~s~~ 185 (192)
-...+.++++++|.|.+++
T Consensus 106 ~~~~~~a~~~ilVydvt~~ 124 (211)
T 2g3y_A 106 DHCMQVGDAYLIVYSITDR 124 (211)
T ss_dssp HCCCCCCSEEEEEEETTCH
T ss_pred HHHHhhCCEEEEEEECCCH
Confidence 1223556788888887654
No 178
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=98.62 E-value=2.3e-08 Score=77.42 Aligned_cols=57 Identities=21% Similarity=0.254 Sum_probs=34.6
Q ss_pred CCeEEEEecCCCcHHHHHHHHhhccCceeecCCC--Ccee-EEEEEeeCC--eEEEEECCCCC
Q 029512 92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKP--GLTQ-TINFFKLGT--KLCLVDLPGYG 149 (192)
Q Consensus 92 ~~~i~lvG~~n~GKStlin~L~~~~~~~~~~~~~--g~T~-~~~~~~~~~--~~~lvDtPG~~ 149 (192)
..+|+++|.+|||||||+|++++.. ...++..+ |.+. .......+. .+.++||+|..
T Consensus 6 ~~kv~lvG~~~vGKSsL~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Dt~~~~ 67 (192)
T 2cjw_A 6 YYRVVLIGEQGVGKSTLANIFAGVH-DSMDSDXEVLGEDTYERTLMVDGESATIILLDMWENK 67 (192)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHHS-CCC----GGGCTTEEEEEEEETTEEEEEEEECCCCC-
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCc-CCcCccccccceeEEEEEEEECCeEEEEEEEEeccCc
Confidence 4689999999999999999999752 22233222 2222 222222233 46789999953
No 179
>1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A
Probab=98.61 E-value=2.4e-08 Score=87.95 Aligned_cols=82 Identities=22% Similarity=0.272 Sum_probs=54.5
Q ss_pred CCeEEEEecCCCcHHHHHHHHhhccC-ce----------------------eecC------CCCceeEEE---EEeeCCe
Q 029512 92 LPEIAFAGRSNVGKSSMLNALTRQWG-VV----------------------RTSD------KPGLTQTIN---FFKLGTK 139 (192)
Q Consensus 92 ~~~i~lvG~~n~GKStlin~L~~~~~-~~----------------------~~~~------~~g~T~~~~---~~~~~~~ 139 (192)
..+|+++|.+|+|||||+|+|++... +. .+.+ ..|.|.+.. +...+..
T Consensus 7 ~~~i~iiG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTi~~~~~~~~~~~~~ 86 (458)
T 1f60_A 7 HINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVLDKLKAERERGITIDIALWKFETPKYQ 86 (458)
T ss_dssp EEEEEEEECTTSCHHHHHHHHHHHHSCSSHHHHHHHHHHGGGGSSSCCCHHHHHHHHHHHHHTTCCCSCSCEEEECSSEE
T ss_pred eeEEEEEcCCCCCHHHHHHHHHHHcCCcChHHHHHhhhhHHhcCCcchhhhhhhccchhHHhcCcEEEEEEEEEecCCce
Confidence 46899999999999999999986410 00 0001 245665543 2234678
Q ss_pred EEEEECCCCCCCCChHHHHHHHHHHHhhhccCceeEEEEEEecCC
Q 029512 140 LCLVDLPGYGFAYAKEEVKDAWEELVSISYRNFWSCTCFLIYIFY 184 (192)
Q Consensus 140 ~~lvDtPG~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~~vvD~s~ 184 (192)
+.+|||||... ... .+ ......+|++++|+|+++
T Consensus 87 ~~iiDtPGh~~-----f~~----~~--~~~~~~aD~~ilVvda~~ 120 (458)
T 1f60_A 87 VTVIDAPGHRD-----FIK----NM--ITGTSQADCAILIIAGGV 120 (458)
T ss_dssp EEEEECCCCTT-----HHH----HH--HHSSSCCSEEEEEEECSH
T ss_pred EEEEECCCcHH-----HHH----HH--HhhhhhCCEEEEEEeCCc
Confidence 99999999542 111 11 345678899999999975
No 180
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=98.61 E-value=1.7e-07 Score=81.91 Aligned_cols=62 Identities=24% Similarity=0.321 Sum_probs=39.5
Q ss_pred CCeEEEEecCCCcHHHHHHHHhhccCc--eeecCCCCceeEEEEE-ee----CCeEEEEECCCCCCCCC
Q 029512 92 LPEIAFAGRSNVGKSSMLNALTRQWGV--VRTSDKPGLTQTINFF-KL----GTKLCLVDLPGYGFAYA 153 (192)
Q Consensus 92 ~~~i~lvG~~n~GKStlin~L~~~~~~--~~~~~~~g~T~~~~~~-~~----~~~~~lvDtPG~~~~~~ 153 (192)
.++++|+|++|+|||||+|.|+|..-. ......++.++....+ .. ...+.++|+||++....
T Consensus 42 i~~vaLvG~nGaGKSTLln~L~G~~l~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~ltv~D~~~~g~~~~ 110 (427)
T 2qag_B 42 CFNILCVGETGLGKSTLMDTLFNTKFEGEPATHTQPGVQLQSNTYDLQESNVRLKLTIVSTVGFGDQIN 110 (427)
T ss_dssp EEEEEEECSTTSSSHHHHHHHHTSCC-------CCSSCEEEEEEEEEEC--CEEEEEEEEEECCCC-CC
T ss_pred eeEEEEECCCCCCHHHHHHHHhCccccCCcCCCCCccceEeeEEEEeecCccccccchhhhhhhhhccc
Confidence 345999999999999999999997311 1112234555543221 11 13689999999987543
No 181
>1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A*
Probab=98.60 E-value=1.7e-08 Score=88.21 Aligned_cols=83 Identities=14% Similarity=0.178 Sum_probs=50.7
Q ss_pred CCeEEEEecCCCcHHHHHHHHhhcc-Ccee----------------------------ecCCCCceeEEEEE---eeCCe
Q 029512 92 LPEIAFAGRSNVGKSSMLNALTRQW-GVVR----------------------------TSDKPGLTQTINFF---KLGTK 139 (192)
Q Consensus 92 ~~~i~lvG~~n~GKStlin~L~~~~-~~~~----------------------------~~~~~g~T~~~~~~---~~~~~ 139 (192)
..+|+++|.+|+|||||+|+|++.. .... .....|.|.+.... ..+..
T Consensus 6 ~~~I~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~giTi~~~~~~~~~~~~~ 85 (435)
T 1jny_A 6 HLNLIVIGHVDHGKSTLVGRLLMDRGFIDEKTVKEAEEAAKKLGKESEKFAFLLDRLKEERERGVTINLTFMRFETKKYF 85 (435)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHHHBCCCHHHHHHHHHHHHHHTCTHHHHHHHHHHHHHC-----------CEEECSSCE
T ss_pred EEEEEEEeCCCCCHHHHHHHHHHHcCCcCHHHHhhhhhhhhhcCCcchhhhhhhccChHHHhcCceeEeeEEEEecCCeE
Confidence 4689999999999999999998641 0000 00135677765432 24678
Q ss_pred EEEEECCCCCCCCChHHHHHHHHHHHhhhccCceeEEEEEEecCCc
Q 029512 140 LCLVDLPGYGFAYAKEEVKDAWEELVSISYRNFWSCTCFLIYIFYT 185 (192)
Q Consensus 140 ~~lvDtPG~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~~vvD~s~~ 185 (192)
+.+|||||... .... + ......+|++++|+|+++.
T Consensus 86 ~~iiDtpG~~~------f~~~---~--~~~~~~aD~~ilVvDa~~g 120 (435)
T 1jny_A 86 FTIIDAPGHRD------FVKN---M--ITGASQADAAILVVSAKKG 120 (435)
T ss_dssp EEECCCSSSTT------HHHH---H--HHTSSCCSEEEEEEECSTT
T ss_pred EEEEECCCcHH------HHHH---H--HhhhhhcCEEEEEEECCCC
Confidence 99999999653 1111 1 3345788999999999863
No 182
>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*
Probab=98.60 E-value=3e-08 Score=90.15 Aligned_cols=80 Identities=21% Similarity=0.264 Sum_probs=51.2
Q ss_pred CCCeEEEEecCCCcHHHHHHHHhhccCceeecCCC-CceeEE--EEEee-------------------CCeEEEEECCCC
Q 029512 91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKP-GLTQTI--NFFKL-------------------GTKLCLVDLPGY 148 (192)
Q Consensus 91 ~~~~i~lvG~~n~GKStlin~L~~~~~~~~~~~~~-g~T~~~--~~~~~-------------------~~~~~lvDtPG~ 148 (192)
..++|+++|++|+|||||+|+|++.. . ....+ |.|++. .+... ...+.+|||||.
T Consensus 4 r~~~V~IvGh~d~GKTTLl~~L~~~~-v--~~~e~ggiT~~ig~~~~~~~~~~~~~~~~~~~~~v~~~~~~i~liDTPGh 80 (594)
T 1g7s_A 4 RSPIVSVLGHVDHGKTTLLDHIRGSA-V--ASREAGGITQHIGATEIPMDVIEGICGDFLKKFSIRETLPGLFFIDTPGH 80 (594)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHHH-H--SCC----CCCBTTEEEEEHHHHHHHSCGGGGGCGGGGTCCEEEEECCCTT
T ss_pred CCcEEEEECCCCCcHHHHHHHHhccc-C--ccccCCceecccCeEEEeechhhhhccccccccccccccCCEEEEECCCc
Confidence 35799999999999999999999862 1 22222 444432 11110 125999999996
Q ss_pred CCCCChHHHHHHHHHHHhhhccCceeEEEEEEecCC
Q 029512 149 GFAYAKEEVKDAWEELVSISYRNFWSCTCFLIYIFY 184 (192)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~l~~~~~~~~v~~vvD~s~ 184 (192)
..-.. +. -...+.+|++++|+|+++
T Consensus 81 e~F~~----------~~-~r~~~~aD~aILVvDa~~ 105 (594)
T 1g7s_A 81 EAFTT----------LR-KRGGALADLAILIVDINE 105 (594)
T ss_dssp SCCTT----------SB-CSSSBSCSEEEEEEETTT
T ss_pred HHHHH----------HH-HHHHhhCCEEEEEEECCC
Confidence 43111 00 123456899999999987
No 183
>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum}
Probab=98.59 E-value=4.4e-08 Score=87.62 Aligned_cols=85 Identities=16% Similarity=0.088 Sum_probs=49.1
Q ss_pred CCCCeEEEEecCCCcHHHHHHHHhhccCceeecCCCCceeEEEE--------Ee---eCCeEEEEECCCCCCCCChHHHH
Q 029512 90 PDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINF--------FK---LGTKLCLVDLPGYGFAYAKEEVK 158 (192)
Q Consensus 90 ~~~~~i~lvG~~n~GKStlin~L~~~~~~~~~~~~~g~T~~~~~--------~~---~~~~~~lvDtPG~~~~~~~~~~~ 158 (192)
....+|+++|.+|||||||+|+|++........++.|.+..... .. .+..+.++||||......
T Consensus 39 ~~~~kV~lvG~~~vGKSSLl~~l~~~~~~~~~~~t~g~~~~~~~~~~~~~v~~~~~~~~~~~~i~Dt~G~e~~~~----- 113 (535)
T 3dpu_A 39 LQEIKVHLIGDGMAGKTSLLKQLIGETFDPKESQTHGLNVVTKQAPNIKGLENDDELKECLFHFWDFGGQEIMHA----- 113 (535)
T ss_dssp CCEEEEEEESSSCSSHHHHHHHHHC-----------CCCEEEEEGGGSGGGTTCSTTTTCEEEEECCCSCCTTTT-----
T ss_pred ccceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceEEEEeccccccceeecCCCceEEEEEEECCcHHHHHH-----
Confidence 34579999999999999999999987321222222232222111 01 146799999999432111
Q ss_pred HHHHHHHhhhccCceeEEEEEEecCCc
Q 029512 159 DAWEELVSISYRNFWSCTCFLIYIFYT 185 (192)
Q Consensus 159 ~~~~~~~~l~~~~~~~~v~~vvD~s~~ 185 (192)
....++ +.+|++++|+|++..
T Consensus 114 -~~~~~l-----~~~d~ii~V~D~s~~ 134 (535)
T 3dpu_A 114 -SHQFFM-----TRSSVYMLLLDSRTD 134 (535)
T ss_dssp -TCHHHH-----HSSEEEEEEECGGGG
T ss_pred -HHHHHc-----cCCcEEEEEEeCCCc
Confidence 111121 247999999998754
No 184
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=98.59 E-value=5.2e-08 Score=83.31 Aligned_cols=59 Identities=31% Similarity=0.303 Sum_probs=30.3
Q ss_pred CCeEEEEecCCCcHHHHHHHHhhccCceeecCC------CCceeEEEEEe-----eC--CeEEEEECCCCCCC
Q 029512 92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDK------PGLTQTINFFK-----LG--TKLCLVDLPGYGFA 151 (192)
Q Consensus 92 ~~~i~lvG~~n~GKStlin~L~~~~~~~~~~~~------~g~T~~~~~~~-----~~--~~~~lvDtPG~~~~ 151 (192)
..+|+++|.+|+|||||+|+|++... ...... ...|....... .+ ..+.+|||||+++.
T Consensus 37 ~~~I~vvG~~g~GKSTLln~L~~~~~-~~~~~~~~~~~~~~~ti~~~~~~~~~~~~~~~~~l~i~DTpG~gd~ 108 (361)
T 2qag_A 37 EFTLMVVGESGLGKSTLINSLFLTDL-YPERVIPGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYGDA 108 (361)
T ss_dssp EECEEECCCTTSCHHHHHHHHTTCCC----------------CEEEEEEEEC----CEEEEEEEEC-------
T ss_pred CEEEEEEcCCCCCHHHHHHHHhCCCC-CCCCcccCCCcccCCceeEEEEEEEeecCCcccceEEEEecccccc
Confidence 45899999999999999999987631 211111 11232222111 12 36899999999764
No 185
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=98.58 E-value=9.5e-08 Score=80.95 Aligned_cols=83 Identities=22% Similarity=0.261 Sum_probs=50.4
Q ss_pred CCCCeEEEEecCCCcHHHHHHHHhhcc-----CceeecCCCCceeEE------------------EEE------------
Q 029512 90 PDLPEIAFAGRSNVGKSSMLNALTRQW-----GVVRTSDKPGLTQTI------------------NFF------------ 134 (192)
Q Consensus 90 ~~~~~i~lvG~~n~GKStlin~L~~~~-----~~~~~~~~~g~T~~~------------------~~~------------ 134 (192)
.....|+++|++|+|||||+|.|++.. .+..++..+++|..- .+.
T Consensus 54 ~~~~~i~i~G~~g~GKSTl~~~l~~~~~~~~~~v~v~~~d~~~~~~~~~il~d~~~~~~~~~~~~~~i~~~~~~~~l~g~ 133 (341)
T 2p67_A 54 GNTLRLGVTGTPGAGKSTFLEAFGMLLIREGLKVAVIAVDPSSPVTGGSILGDKTRMNDLARAEAAFIRPVPSSGHLGGA 133 (341)
T ss_dssp SCSEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEECCC---------------CTTTTCTTEEEEEECC-----CH
T ss_pred CCCEEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEEeecCCcCCCCcceecccchHHhhccCCCceeecCccccccchh
Confidence 346789999999999999999997531 233333333332210 000
Q ss_pred ------------eeCCeEEEEECCCCCCCCChHHHHHHHHHHHhhhccCceeEEEEEEecCCce
Q 029512 135 ------------KLGTKLCLVDLPGYGFAYAKEEVKDAWEELVSISYRNFWSCTCFLIYIFYTN 186 (192)
Q Consensus 135 ------------~~~~~~~lvDtPG~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~~vvD~s~~~ 186 (192)
..+..+.|+||||+... .. .+ ...+|.+++|+|++..+
T Consensus 134 ~~~~~~~~~~~~~~~~~i~liDTpG~~~~---~~------~~-----~~~aD~vl~Vvd~~~~~ 183 (341)
T 2p67_A 134 SQRARELMLLCEAAGYDVVIVETVGVGQS---ET------EV-----ARMVDCFISLQIAGGGD 183 (341)
T ss_dssp HHHHHHHHHHHHHTTCSEEEEEEECCTTH---HH------HH-----HTTCSEEEEEECC----
T ss_pred HHHHHHHHHHhhccCCCEEEEeCCCccch---HH------HH-----HHhCCEEEEEEeCCccH
Confidence 12578999999998742 11 01 25789999999987554
No 186
>2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei}
Probab=98.57 E-value=2.7e-08 Score=85.43 Aligned_cols=67 Identities=24% Similarity=0.413 Sum_probs=46.8
Q ss_pred eEEEEecCCCcHHHHHHHHhhccCceeecCCCCceeEEEEE---eeCCeEEEEECCCCCCCCChHHHHHHHHHHHhhhcc
Q 029512 94 EIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFF---KLGTKLCLVDLPGYGFAYAKEEVKDAWEELVSISYR 170 (192)
Q Consensus 94 ~i~lvG~~n~GKStlin~L~~~~~~~~~~~~~g~T~~~~~~---~~~~~~~lvDtPG~~~~~~~~~~~~~~~~~~~l~~~ 170 (192)
+|+++|.+|+|||||+|+|+.. |.|.+..+. ..+..+.+|||||..+- .... +...
T Consensus 23 ~i~iiG~~d~GKSTL~~~L~~~----------giTi~~~~~~~~~~~~~i~iiDtPGh~~f-----~~~~------~~~~ 81 (370)
T 2elf_A 23 NVAIIGTEKSGRTSLAANLGKK----------GTSSDITMYNNDKEGRNMVFVDAHSYPKT-----LKSL------ITAL 81 (370)
T ss_dssp EEEEEESTTSSHHHHHHTTSEE----------EEESSSEEEEECSSSSEEEEEECTTTTTC-----HHHH------HHHH
T ss_pred EEEEECCCCCCHHHHHHHHHhC----------CEEEEeeEEEEecCCeEEEEEECCChHHH-----HHHH------HHHH
Confidence 8999999999999999999922 233333222 23678999999997531 1112 1223
Q ss_pred CceeEEEEEEe
Q 029512 171 NFWSCTCFLIY 181 (192)
Q Consensus 171 ~~~~~v~~vvD 181 (192)
+.+|++++|+|
T Consensus 82 ~~aD~ailVvd 92 (370)
T 2elf_A 82 NISDIAVLCIP 92 (370)
T ss_dssp HTCSEEEEEEC
T ss_pred HHCCEEEEEEc
Confidence 56899999999
No 187
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=98.56 E-value=5.8e-08 Score=82.31 Aligned_cols=24 Identities=29% Similarity=0.464 Sum_probs=21.8
Q ss_pred CCCeEEEEecCCCcHHHHHHHHhh
Q 029512 91 DLPEIAFAGRSNVGKSSMLNALTR 114 (192)
Q Consensus 91 ~~~~i~lvG~~n~GKStlin~L~~ 114 (192)
....++|+|++|+|||||+|.|++
T Consensus 54 ~g~~v~i~G~~GaGKSTLl~~l~g 77 (337)
T 2qm8_A 54 RAIRVGITGVPGVGKSTTIDALGS 77 (337)
T ss_dssp CSEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 456899999999999999999985
No 188
>2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W*
Probab=98.56 E-value=1.5e-07 Score=84.45 Aligned_cols=83 Identities=17% Similarity=0.152 Sum_probs=51.1
Q ss_pred CCeEEEEecCCCcHHHHHHHHhhccC-ce-------------eecC------CCCceeE---EEEEeeCCeEEEEECCCC
Q 029512 92 LPEIAFAGRSNVGKSSMLNALTRQWG-VV-------------RTSD------KPGLTQT---INFFKLGTKLCLVDLPGY 148 (192)
Q Consensus 92 ~~~i~lvG~~n~GKStlin~L~~~~~-~~-------------~~~~------~~g~T~~---~~~~~~~~~~~lvDtPG~ 148 (192)
..+|+++|.+|+|||||+|+|++... .. .+.+ ..|.|.. ..+...+..+.||||||.
T Consensus 13 ~~~I~IiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~~~i~liDTPG~ 92 (529)
T 2h5e_A 13 RRTFAIISHPDAGKTTITEKVLLFGQAIQTAGTVKGRGSNQHAKSDWMEMEKQRGISITTSVMQFPYHDCLVNLLDTPGH 92 (529)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHSCC-------------------------------CCTTEEEEEETTEEEEEECCCCS
T ss_pred CCEEEEECCCCChHHHHHHHHHhhcCCccccceeecCccccceeeccchhcccCCcceeeeEEEEEECCeEEEEEECCCC
Confidence 35899999999999999999997421 10 0011 2233322 223335788999999997
Q ss_pred CCCCChHHHHHHHHHHHhhhccCceeEEEEEEecCCc
Q 029512 149 GFAYAKEEVKDAWEELVSISYRNFWSCTCFLIYIFYT 185 (192)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~l~~~~~~~~v~~vvD~s~~ 185 (192)
.+-. . .+ ....+.+|++++|+|++..
T Consensus 93 ~df~-~-----~~-----~~~l~~aD~~IlVvDa~~g 118 (529)
T 2h5e_A 93 EDFS-E-----DT-----YRTLTAVDCCLMVIDAAKG 118 (529)
T ss_dssp TTCC-H-----HH-----HHGGGGCSEEEEEEETTTC
T ss_pred hhHH-H-----HH-----HHHHHHCCEEEEEEeCCcc
Confidence 5411 1 11 1223568999999999763
No 189
>2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus}
Probab=98.54 E-value=4.2e-08 Score=90.63 Aligned_cols=85 Identities=18% Similarity=0.127 Sum_probs=51.0
Q ss_pred CCCCeEEEEecCCCcHHHHHHHHhhccC-c---eee------cC------CCCceeEEE---EEeeCCeEEEEECCCCCC
Q 029512 90 PDLPEIAFAGRSNVGKSSMLNALTRQWG-V---VRT------SD------KPGLTQTIN---FFKLGTKLCLVDLPGYGF 150 (192)
Q Consensus 90 ~~~~~i~lvG~~n~GKStlin~L~~~~~-~---~~~------~~------~~g~T~~~~---~~~~~~~~~lvDtPG~~~ 150 (192)
....+|+++|.+|+|||||+|+|++... . ..+ .+ ..++|.... ....+..+.||||||..+
T Consensus 8 ~~~~~I~IvG~~~aGKSTL~~~Ll~~~~~~~~~g~v~~~~~~~D~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~~d 87 (693)
T 2xex_A 8 EKTRNIGIMAHIDAGKTTTTERILYYTGRIHKIGETHEGASQMDWMEQEQDRGITITSAATTAAWEGHRVNIIDTPGHVD 87 (693)
T ss_dssp TTEEEEEEECCGGGTHHHHHHHHHHHHSSCC-------------------------CCSEEEEEETTEEEEEECCCCCSS
T ss_pred ccceEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCceecccchhhhhcCceEeeeeEEEEECCeeEEEEECcCCcc
Confidence 3456999999999999999999995311 0 001 11 233443322 223477899999999864
Q ss_pred CCChHHHHHHHHHHHhhhccCceeEEEEEEecCCc
Q 029512 151 AYAKEEVKDAWEELVSISYRNFWSCTCFLIYIFYT 185 (192)
Q Consensus 151 ~~~~~~~~~~~~~~~~l~~~~~~~~v~~vvD~s~~ 185 (192)
-. .+ +... .+.+|++++|+|++..
T Consensus 88 f~-~~-----~~~~-----l~~aD~~llVvDa~~g 111 (693)
T 2xex_A 88 FT-VE-----VERS-----LRVLDGAVTVLDAQSG 111 (693)
T ss_dssp CC-HH-----HHHH-----HHHCSEEEEEEETTTB
T ss_pred hH-HH-----HHHH-----HHHCCEEEEEECCCCC
Confidence 21 11 1111 1347999999999763
No 190
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=98.54 E-value=2.2e-07 Score=79.08 Aligned_cols=24 Identities=29% Similarity=0.479 Sum_probs=21.7
Q ss_pred CCCeEEEEecCCCcHHHHHHHHhh
Q 029512 91 DLPEIAFAGRSNVGKSSMLNALTR 114 (192)
Q Consensus 91 ~~~~i~lvG~~n~GKStlin~L~~ 114 (192)
..+.|+++|.+|+|||||+|.|+.
T Consensus 78 ~~~~I~i~G~~G~GKSTl~~~L~~ 101 (355)
T 3p32_A 78 NAHRVGITGVPGVGKSTAIEALGM 101 (355)
T ss_dssp CSEEEEEECCTTSSHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHH
Confidence 456999999999999999999974
No 191
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=98.49 E-value=7.8e-07 Score=79.36 Aligned_cols=89 Identities=15% Similarity=0.170 Sum_probs=52.2
Q ss_pred CCCeEEEEecCCCcHHHHHHHHh------hccCceeecCCC---Cc--------ee-EEEEEe-----------------
Q 029512 91 DLPEIAFAGRSNVGKSSMLNALT------RQWGVVRTSDKP---GL--------TQ-TINFFK----------------- 135 (192)
Q Consensus 91 ~~~~i~lvG~~n~GKStlin~L~------~~~~~~~~~~~~---g~--------T~-~~~~~~----------------- 135 (192)
....|+++|.+||||||+++.|+ |. ++..++.-+ +. ++ ....+.
T Consensus 100 ~~~vI~ivG~~GvGKTTl~~kLA~~l~~~G~-kVllVd~D~~r~aa~~qL~~~~~~~~i~v~~~~~~~dp~~i~~~al~~ 178 (504)
T 2j37_W 100 KQNVIMFVGLQGSGKTTTCSKLAYYYQRKGW-KTCLICADTFRAGAFDQLKQNATKARIPFYGSYTEMDPVIIASEGVEK 178 (504)
T ss_dssp --EEEEEECSTTSSHHHHHHHHHHHHHHTTC-CEEEEEECCSSSHHHHHHHHHHHHHTCCEEECCCCSCHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhCCC-eEEEEeccccchhHHHHHHHHhhccCceEEccCCCCCHHHHHHHHHHH
Confidence 34589999999999999999999 54 333333211 00 00 000000
Q ss_pred ---eCCeEEEEECCCCCCCCChHHHHHHHHHHHhhhccCceeEEEEEEecCCc
Q 029512 136 ---LGTKLCLVDLPGYGFAYAKEEVKDAWEELVSISYRNFWSCTCFLIYIFYT 185 (192)
Q Consensus 136 ---~~~~~~lvDtPG~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~~vvD~s~~ 185 (192)
.+..+.||||||.... .+.+......+.+ ....|.+++|+|+...
T Consensus 179 ~~~~~~DvvIIDTpG~~~~--~~~l~~el~~~~~---~i~pd~vllVvDa~~g 226 (504)
T 2j37_W 179 FKNENFEIIIVDTSGRHKQ--EDSLFEEMLQVAN---AIQPDNIVYVMDASIG 226 (504)
T ss_dssp HHHTTCCEEEEEECCCCTT--CHHHHHHHHHHHH---HHCCSEEEEEEETTCC
T ss_pred HHHCCCcEEEEeCCCCccc--chhHHHHHHHHHh---hhcCceEEEEEecccc
Confidence 3568999999998652 2222222222222 1256889999998753
No 192
>1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A
Probab=98.48 E-value=9.8e-08 Score=84.24 Aligned_cols=83 Identities=19% Similarity=0.163 Sum_probs=46.5
Q ss_pred CCeEEEEecCCCcHHHHHHHHhhccCc-----------------------eeecC------CCCceeEEEE---EeeCCe
Q 029512 92 LPEIAFAGRSNVGKSSMLNALTRQWGV-----------------------VRTSD------KPGLTQTINF---FKLGTK 139 (192)
Q Consensus 92 ~~~i~lvG~~n~GKStlin~L~~~~~~-----------------------~~~~~------~~g~T~~~~~---~~~~~~ 139 (192)
..+|+++|.+|+|||||+|+|+..... +.+.+ ..|.|.+... ...+..
T Consensus 43 ~~~i~iiG~vd~GKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~G~~~~~~~~~~D~~~~er~~giTi~~~~~~~~~~~~~ 122 (467)
T 1r5b_A 43 HVNIVFIGHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAGKESWYLSWALDSTSEEREKGKTVEVGRAYFETEHRR 122 (467)
T ss_dssp EEEEEEEECGGGTHHHHHHHHHHHTTSSCHHHHHHHHHHTCC----------------------------CCEEECSSEE
T ss_pred eeEEEEEECCCCCHHHHHHHHHHHhCCCChHHHHHHHhHHHhcCCcchhhhhhcccchhhhhcCceEEeeeEEEecCCeE
Confidence 468999999999999999999753110 00111 2456666542 223678
Q ss_pred EEEEECCCCCCCCChHHHHHHHHHHHhhhccCceeEEEEEEecCCc
Q 029512 140 LCLVDLPGYGFAYAKEEVKDAWEELVSISYRNFWSCTCFLIYIFYT 185 (192)
Q Consensus 140 ~~lvDtPG~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~~vvD~s~~ 185 (192)
+.+|||||...- .. .+ ......+|++++|+|+++.
T Consensus 123 ~~iiDtPGh~~f------~~---~~--~~~~~~aD~~ilVvDa~~g 157 (467)
T 1r5b_A 123 FSLLDAPGHKGY------VT---NM--INGASQADIGVLVISARRG 157 (467)
T ss_dssp EEECCCCC----------------------TTSCSEEEEEEECSTT
T ss_pred EEEEECCCcHHH------HH---HH--HhhcccCCEEEEEEeCCcC
Confidence 999999996321 11 11 3345678999999999764
No 193
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=98.43 E-value=6e-08 Score=81.44 Aligned_cols=58 Identities=33% Similarity=0.525 Sum_probs=36.4
Q ss_pred CCCeEEEEecCCCcHHHHHHHHhhccCceeecCCC-------CceeEEEEEeeCCeEEEEECCCCCC
Q 029512 91 DLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKP-------GLTQTINFFKLGTKLCLVDLPGYGF 150 (192)
Q Consensus 91 ~~~~i~lvG~~n~GKStlin~L~~~~~~~~~~~~~-------g~T~~~~~~~~~~~~~lvDtPG~~~ 150 (192)
.+..++++|++|||||||+|+|.+... ..++... ++|+........ ...++||||+..
T Consensus 172 ~G~~~~lvG~sG~GKSTLln~L~g~~~-~~~G~I~~~~~~G~~tt~~~~~~~~~-~g~v~dtpg~~~ 236 (307)
T 1t9h_A 172 QDKTTVFAGQSGVGKSSLLNAISPELG-LRTNEISEHLGRGKHTTRHVELIHTS-GGLVADTPGFSS 236 (307)
T ss_dssp TTSEEEEEESHHHHHHHHHHHHCC--------------------CCCCCEEEET-TEEEESSCSCSS
T ss_pred CCCEEEEECCCCCCHHHHHHHhccccc-ccccceeeecCCCcccccHHHHhhcC-CEEEecCCCccc
Confidence 356899999999999999999998632 2222222 455544444443 458999999865
No 194
>1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ...
Probab=98.40 E-value=4.3e-07 Score=83.86 Aligned_cols=84 Identities=18% Similarity=0.167 Sum_probs=49.7
Q ss_pred CCCeEEEEecCCCcHHHHHHHHhhccC-c---eeec------C------CCCceeEEE---EEeeCCeEEEEECCCCCCC
Q 029512 91 DLPEIAFAGRSNVGKSSMLNALTRQWG-V---VRTS------D------KPGLTQTIN---FFKLGTKLCLVDLPGYGFA 151 (192)
Q Consensus 91 ~~~~i~lvG~~n~GKStlin~L~~~~~-~---~~~~------~------~~g~T~~~~---~~~~~~~~~lvDtPG~~~~ 151 (192)
...+|+++|.+|+|||||+|+|+.... . ..+. + ..+.|.... ....+..+.||||||..+-
T Consensus 11 ~~~~I~IvG~~~aGKTTL~~~Ll~~~g~~~~~g~v~~~~~~~d~~~~E~~~giTi~~~~~~~~~~~~~i~liDTPG~~df 90 (691)
T 1dar_A 11 RLRNIGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAAVTTCFWKDHRINIIDTPGHVDF 90 (691)
T ss_dssp GEEEEEEEECTTSCHHHHHHHHHHHHCC----------------------------CCEEEEEETTEEEEEECCCSSTTC
T ss_pred cccEEEEECCCCCCHHHHHHHHHHhcCCCcccceecCCceeccCchhhhhcccccccceEEEEECCeEEEEEECcCccch
Confidence 346899999999999999999984311 0 0111 1 224443322 2234778999999997531
Q ss_pred CChHHHHHHHHHHHhhhccCceeEEEEEEecCCc
Q 029512 152 YAKEEVKDAWEELVSISYRNFWSCTCFLIYIFYT 185 (192)
Q Consensus 152 ~~~~~~~~~~~~~~~l~~~~~~~~v~~vvD~s~~ 185 (192)
. ..+... .+.+|++++|+|++..
T Consensus 91 --~----~~~~~~-----l~~aD~~ilVvDa~~g 113 (691)
T 1dar_A 91 --T----IEVERS-----MRVLDGAIVVFDSSQG 113 (691)
T ss_dssp --H----HHHHHH-----HHHCSEEEEEEETTTC
T ss_pred --H----HHHHHH-----HHHCCEEEEEEECCCC
Confidence 1 112111 2347999999999764
No 195
>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B
Probab=98.38 E-value=8.8e-07 Score=85.66 Aligned_cols=84 Identities=14% Similarity=0.154 Sum_probs=52.0
Q ss_pred CCCeEEEEecCCCcHHHHHHHHhhcc---C------ce-----eecCCCCceeEEE---EEeeCCeEEEEECCCCCCCCC
Q 029512 91 DLPEIAFAGRSNVGKSSMLNALTRQW---G------VV-----RTSDKPGLTQTIN---FFKLGTKLCLVDLPGYGFAYA 153 (192)
Q Consensus 91 ~~~~i~lvG~~n~GKStlin~L~~~~---~------~~-----~~~~~~g~T~~~~---~~~~~~~~~lvDtPG~~~~~~ 153 (192)
...+|+++|.+|+|||||+|+|++.. . .. ......|.|.+.. +...+..+.+|||||..
T Consensus 295 ~~lnIvIIGhvDvGKSTLInrLt~~~~~~G~a~f~~~a~lD~~~~ErerGITIdva~v~f~~~~~kI~IIDTPGHe---- 370 (1289)
T 3avx_A 295 PHVNVGTIGHVDHGKTTLTAAITTVLAKTYGGAARAFDQIDNAPEEKARGITINTSHVEYDTPTRHYAHVDCPGHA---- 370 (1289)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHHHHHHSCC---------------------CCSCEEEECSSCEEEEEECCCHH----
T ss_pred CeeEEEEEcCCCCCHHHHHHHHHhhhccccccccccccccccccccccCceeEEEEEEEEcCCCEEEEEEECCChH----
Confidence 45689999999999999999999741 0 00 0012345565432 22246789999999942
Q ss_pred hHHHHHHHHHHHhhhccCceeEEEEEEecCCc
Q 029512 154 KEEVKDAWEELVSISYRNFWSCTCFLIYIFYT 185 (192)
Q Consensus 154 ~~~~~~~~~~~~~l~~~~~~~~v~~vvD~s~~ 185 (192)
... ..+ ......+|++++|+|+++.
T Consensus 371 --dF~---~~m--i~gas~AD~aILVVDAtdG 395 (1289)
T 3avx_A 371 --DYV---KNM--ITGAAQMDGAILVVAATDG 395 (1289)
T ss_dssp --HHH---HHH--HHTSCCCSEEEEEEETTTC
T ss_pred --HHH---HHH--HHHHhhCCEEEEEEcCCcc
Confidence 111 111 3456789999999999763
No 196
>2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H
Probab=98.38 E-value=1.1e-06 Score=81.32 Aligned_cols=85 Identities=15% Similarity=0.119 Sum_probs=53.3
Q ss_pred CCCCeEEEEecCCCcHHHHHHHHhhccC-ce---ee------cC------CCCceeEEEEE---eeC-------CeEEEE
Q 029512 90 PDLPEIAFAGRSNVGKSSMLNALTRQWG-VV---RT------SD------KPGLTQTINFF---KLG-------TKLCLV 143 (192)
Q Consensus 90 ~~~~~i~lvG~~n~GKStlin~L~~~~~-~~---~~------~~------~~g~T~~~~~~---~~~-------~~~~lv 143 (192)
....+|+++|..|+|||||+++|+.... .. .+ .+ ..|.|...... +.+ ..+.||
T Consensus 8 ~~~~~I~IiG~~~~GKTTL~~~Ll~~~g~~~~~g~v~~g~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~i~li 87 (704)
T 2rdo_7 8 ARYRNIGISAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTAFWSGMAKQYEPHRINII 87 (704)
T ss_pred ccccEEEEECCCCCCHHHHHHHHHHhcCCcccccccCCCceeecChhhHHhcCceeeeceEEEEECCccccCCceeEEEE
Confidence 3467999999999999999999975311 00 11 11 23455543322 223 789999
Q ss_pred ECCCCCCCCChHHHHHHHHHHHhhhccCceeEEEEEEecCCc
Q 029512 144 DLPGYGFAYAKEEVKDAWEELVSISYRNFWSCTCFLIYIFYT 185 (192)
Q Consensus 144 DtPG~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~~vvD~s~~ 185 (192)
||||..+- ...+.. ..+.+|++++|+|++..
T Consensus 88 DTPG~~df------~~~~~~-----~l~~aD~aIlVvDa~~g 118 (704)
T 2rdo_7 88 DTPGHVDF------TIEVER-----SMRVLDGAVMVYCAVGG 118 (704)
T ss_pred eCCCccch------HHHHHH-----HHHHCCEEEEEEeCCCC
Confidence 99997531 111111 12357999999998753
No 197
>1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A*
Probab=98.35 E-value=3.7e-07 Score=85.98 Aligned_cols=82 Identities=13% Similarity=0.182 Sum_probs=51.1
Q ss_pred CCeEEEEecCCCcHHHHHHHHhhccCceeecC---------------CCCceeEE---EEEee----------------C
Q 029512 92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSD---------------KPGLTQTI---NFFKL----------------G 137 (192)
Q Consensus 92 ~~~i~lvG~~n~GKStlin~L~~~~~~~~~~~---------------~~g~T~~~---~~~~~----------------~ 137 (192)
..+|+++|.+|+|||||+|+|++... ..... ..|.|... ...+. +
T Consensus 19 ~rnI~IiG~~~~GKTTL~~~Ll~~~g-~i~~~~~~~~~~~D~~~~E~~rgiTI~~~~~~~~~~~~~~~~~~i~~~~~~~~ 97 (842)
T 1n0u_A 19 VRNMSVIAHVDHGKSTLTDSLVQRAG-IISAAKAGEARFTDTRKDEQERGITIKSTAISLYSEMSDEDVKEIKQKTDGNS 97 (842)
T ss_dssp EEEEEEECCGGGTHHHHHHHHHHHHB-CCBC------------------CCCBCCCEEEEEEECCHHHHHHCSSCCCSSE
T ss_pred ccEEEEECCCCCCHHHHHHHHHHhcC-CcccccCCCceeecCchhhhhcceeEeeceeEEEecccccccccccccccCCC
Confidence 35899999999999999999997521 11111 12223211 11111 5
Q ss_pred CeEEEEECCCCCCCCChHHHHHHHHHHHhhhccCceeEEEEEEecCCc
Q 029512 138 TKLCLVDLPGYGFAYAKEEVKDAWEELVSISYRNFWSCTCFLIYIFYT 185 (192)
Q Consensus 138 ~~~~lvDtPG~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~~vvD~s~~ 185 (192)
..+.||||||..+-. . .+... .+.+|++++|+|+...
T Consensus 98 ~~i~liDTPG~~df~-~-----~~~~~-----l~~aD~ailVvDa~~g 134 (842)
T 1n0u_A 98 FLINLIDSPGHVDFS-S-----EVTAA-----LRVTDGALVVVDTIEG 134 (842)
T ss_dssp EEEEEECCCCCCSSC-H-----HHHHH-----HHTCSEEEEEEETTTB
T ss_pred ceEEEEECcCchhhH-H-----HHHHH-----HHhCCEEEEEEeCCCC
Confidence 679999999986521 1 12122 2468999999999764
No 198
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=98.35 E-value=2.2e-07 Score=76.50 Aligned_cols=59 Identities=29% Similarity=0.436 Sum_probs=34.3
Q ss_pred CeEEEEecCCCcHHHHHHHHhhccCceeec------CCCCcee--EEEE----EeeCCeEEEEECCCCCCC
Q 029512 93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTS------DKPGLTQ--TINF----FKLGTKLCLVDLPGYGFA 151 (192)
Q Consensus 93 ~~i~lvG~~n~GKStlin~L~~~~~~~~~~------~~~g~T~--~~~~----~~~~~~~~lvDtPG~~~~ 151 (192)
++++++|++|+|||||+|.|+|........ +.+..+. ...+ ......+.++|+|||+..
T Consensus 3 f~v~lvG~nGaGKSTLln~L~g~~~~~~G~i~~~g~~i~~~~~~~~i~~v~q~~~~~~~ltv~d~~~~g~~ 73 (270)
T 3sop_A 3 FNIMVVGQSGLGKSTLVNTLFKSQVSRKASSWNREEKIPKTVEIKAIGHVIEEGGVKMKLTVIDTPGFGDQ 73 (270)
T ss_dssp EEEEEEESSSSSHHHHHHHHHHHHC------------CCCCCSCCEEEESCC----CCEEEEECCCC--CC
T ss_pred eEEEEECCCCCCHHHHHHHHhCCCCCCCCccccCCcccCcceeeeeeEEEeecCCCcCCceEEechhhhhh
Confidence 479999999999999999999864211110 1111111 1111 112357899999999863
No 199
>3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C*
Probab=98.34 E-value=4.2e-07 Score=82.69 Aligned_cols=83 Identities=12% Similarity=0.083 Sum_probs=43.7
Q ss_pred CCeEEEEecCCCcHHHHHHHHhhccCce-------eec------CCCCceeEEE---EEee-----CCeEEEEECCCCCC
Q 029512 92 LPEIAFAGRSNVGKSSMLNALTRQWGVV-------RTS------DKPGLTQTIN---FFKL-----GTKLCLVDLPGYGF 150 (192)
Q Consensus 92 ~~~i~lvG~~n~GKStlin~L~~~~~~~-------~~~------~~~g~T~~~~---~~~~-----~~~~~lvDtPG~~~ 150 (192)
..+|+++|.+|+|||||+++|+...... ... ...|.|.... ..+. +..+.||||||..+
T Consensus 4 irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGiTi~~~~~~~~~~~~~g~~~~l~liDTPGh~d 83 (599)
T 3cb4_D 4 IRNFSIIAHIDHGKSTLSDRIIQICGGLSDREMEAQVLDSMDLERERGITIKAQSVTLDYKASDGETYQLNFIDTPGHVD 83 (599)
T ss_dssp EEEEEEECCC----CCHHHHHHHHTTC--------------------------CEEEEEEECTTSCEEEEEEEECCCCGG
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhcCCcccccccccccccchhhhcccceeeeeEEEEEEecCCCCeEEEEEEECCCchH
Confidence 4589999999999999999998742110 000 1234454432 2121 25789999999743
Q ss_pred CCChHHHHHHHHHHHhhhccCceeEEEEEEecCCc
Q 029512 151 AYAKEEVKDAWEELVSISYRNFWSCTCFLIYIFYT 185 (192)
Q Consensus 151 ~~~~~~~~~~~~~~~~l~~~~~~~~v~~vvD~s~~ 185 (192)
- ...+... .+.+|++++|+|++..
T Consensus 84 F------~~ev~~~-----l~~aD~aILVVDa~~g 107 (599)
T 3cb4_D 84 F------SYEVSRS-----LAACEGALLVVDAGQG 107 (599)
T ss_dssp G------HHHHHHH-----HHHCSEEEEEEETTTC
T ss_pred H------HHHHHHH-----HHHCCEEEEEEECCCC
Confidence 1 1112221 2347999999999763
No 200
>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_B*
Probab=98.30 E-value=3.2e-07 Score=77.72 Aligned_cols=83 Identities=17% Similarity=0.120 Sum_probs=49.2
Q ss_pred eEEEEecCCCcHHHHHHHHhhccCceeecCCCCceeEEEE--EeeCCeEEEEECCCCCCCCChHHHHHHHHHHHhhhccC
Q 029512 94 EIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINF--FKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVSISYRN 171 (192)
Q Consensus 94 ~i~lvG~~n~GKStlin~L~~~~~~~~~~~~~g~T~~~~~--~~~~~~~~lvDtPG~~~~~~~~~~~~~~~~~~~l~~~~ 171 (192)
+|+++|.+|||||||++.+.+.. ........+.|....+ .....++.+|||||-..-..+. . .+..+ .+
T Consensus 1 KIvllGdsgvGKTSLl~~~~~~~-~~~~~~~~~~Tig~~~~~v~~~v~LqIWDTAGQErf~~~~-l--~~~~y-----yr 71 (331)
T 3r7w_B 1 MVLLMGVRRCGKSSICKVVFHNM-QPLDTLYLESTSNPSLEHFSTLIDLAVMELPGQLNYFEPS-Y--DSERL-----FK 71 (331)
T ss_dssp CEEEECSTTSSTTHHHHHHHSCC-CSGGGTTCCCCCSCCCEEECSSSCEEEEECCSCSSSCCCS-H--HHHHH-----HT
T ss_pred CEEEECCCCCCHHHHHHHHHcCC-CCCccceecCeeeeeeEEEccEEEEEEEECCCchhccchh-h--hhhhh-----cc
Confidence 58899999999999999887652 1111111222222111 1234789999999964311100 0 01122 25
Q ss_pred ceeEEEEEEecCCc
Q 029512 172 FWSCTCFLIYIFYT 185 (192)
Q Consensus 172 ~~~~v~~vvD~s~~ 185 (192)
.++++++|+|+++.
T Consensus 72 ~a~~~IlV~Ditd~ 85 (331)
T 3r7w_B 72 SVGALVYVIDSQDE 85 (331)
T ss_dssp TCSEEEEECCCSSC
T ss_pred CCCEEEEEEECCch
Confidence 68899999998765
No 201
>2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A*
Probab=98.30 E-value=5.8e-07 Score=81.73 Aligned_cols=83 Identities=20% Similarity=0.205 Sum_probs=46.6
Q ss_pred CCeEEEEecCCCcHHHHHHHHhhccCce-------eecC------CCCceeEE---EEEee-----CCeEEEEECCCCCC
Q 029512 92 LPEIAFAGRSNVGKSSMLNALTRQWGVV-------RTSD------KPGLTQTI---NFFKL-----GTKLCLVDLPGYGF 150 (192)
Q Consensus 92 ~~~i~lvG~~n~GKStlin~L~~~~~~~-------~~~~------~~g~T~~~---~~~~~-----~~~~~lvDtPG~~~ 150 (192)
..+|+++|.+|+|||||+++|+...... ...+ ..|.|... ...+. ...+.||||||..+
T Consensus 6 irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGITI~~~~~~~~~~~~dg~~~~inliDTPGh~d 85 (600)
T 2ywe_A 6 VRNFCIIAHVDHGKSTLADRLLEYTGAISEREKREQLLDTLDVERERGITVKMQAVRMFYKAKDGNTYKLHLIDTPGHVD 85 (600)
T ss_dssp EEEEEEECC--CCHHHHHHHHHHHHTC-----------------------CCCCSEEEEEECTTSCEEEEEEECCCCSGG
T ss_pred ceEEEEECCCCCCHHHHHHHHHhccCCcccccccccccccchhhhcccceeeeeEEEEEEEcCCCCeEEEEEEECCCcHh
Confidence 4589999999999999999998642110 0001 12334321 12111 25788999999753
Q ss_pred CCChHHHHHHHHHHHhhhccCceeEEEEEEecCCc
Q 029512 151 AYAKEEVKDAWEELVSISYRNFWSCTCFLIYIFYT 185 (192)
Q Consensus 151 ~~~~~~~~~~~~~~~~l~~~~~~~~v~~vvD~s~~ 185 (192)
- ...+... ...+|++++|+|++..
T Consensus 86 F------~~ev~r~-----l~~aD~aILVVDa~~g 109 (600)
T 2ywe_A 86 F------SYEVSRA-----LAACEGALLLIDASQG 109 (600)
T ss_dssp G------HHHHHHH-----HHTCSEEEEEEETTTB
T ss_pred H------HHHHHHH-----HHhCCEEEEEEECCCC
Confidence 1 1111111 2457999999999764
No 202
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=98.30 E-value=5.3e-07 Score=78.67 Aligned_cols=60 Identities=27% Similarity=0.284 Sum_probs=32.9
Q ss_pred CCeEEEEecCCCcHHHHHHHHhhccCceeecCCC----CceeEEEEE-e------eCCeEEEEECCCCCCC
Q 029512 92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKP----GLTQTINFF-K------LGTKLCLVDLPGYGFA 151 (192)
Q Consensus 92 ~~~i~lvG~~n~GKStlin~L~~~~~~~~~~~~~----g~T~~~~~~-~------~~~~~~lvDtPG~~~~ 151 (192)
..+|+|+|++|+|||||+|.|+|........+.. ..|...... . ....+.++||||++..
T Consensus 31 sf~I~lvG~sGaGKSTLln~L~g~~~~~~~~~~~~~~~~~t~~~~~i~~v~q~~~~~~~Ltv~Dt~g~~~~ 101 (418)
T 2qag_C 31 EFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDA 101 (418)
T ss_dssp CEEEEEECCTTSSHHHHHHHHTTCCCCCCCCCSCC-----CCEEEEEECC------CEEEEEEECC-----
T ss_pred CEEEEEECCCCCcHHHHHHHHhCCCCCCCCCCCcccCCccceeeeeEEEEEecCCcccceeeeechhhhhh
Confidence 4578999999999999999999973211111000 112111111 1 1236899999999764
No 203
>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens}
Probab=98.27 E-value=1.2e-06 Score=70.98 Aligned_cols=26 Identities=31% Similarity=0.448 Sum_probs=23.1
Q ss_pred CCCCeEEEEecC---------CCcHHHHHHHHhhc
Q 029512 90 PDLPEIAFAGRS---------NVGKSSMLNALTRQ 115 (192)
Q Consensus 90 ~~~~~i~lvG~~---------n~GKStlin~L~~~ 115 (192)
....+|+++|.+ |||||||+|++++.
T Consensus 17 ~~~~ki~lvG~~~~~~~~~~~~vGKSsLi~~l~~~ 51 (255)
T 3c5h_A 17 QGTYNISVVGLSGTEKEKGQCGIGKSCLCNRFVRP 51 (255)
T ss_dssp CSCEEEEEEESCCCTTTTTTCCCSHHHHHHHHHCC
T ss_pred CceeEEEEECCCccccccCCCCcCHHHHHHHHHhc
Confidence 345699999999 99999999999983
No 204
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=98.24 E-value=1.6e-06 Score=72.29 Aligned_cols=56 Identities=32% Similarity=0.395 Sum_probs=38.0
Q ss_pred CCeEEEEecCCCcHHHHHHHHhhccCceeecCCC-------CceeEEEEEeeCCeEEEEECCCCC
Q 029512 92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKP-------GLTQTINFFKLGTKLCLVDLPGYG 149 (192)
Q Consensus 92 ~~~i~lvG~~n~GKStlin~L~~~~~~~~~~~~~-------g~T~~~~~~~~~~~~~lvDtPG~~ 149 (192)
...++++|++|+|||||+|+|. ... ..++... .+|+..........-.++||||+.
T Consensus 165 G~i~~l~G~sG~GKSTLln~l~-~~~-~~~G~i~~~~~~G~~~t~~~~~~~~~~~g~v~d~pg~~ 227 (302)
T 2yv5_A 165 GFICILAGPSGVGKSSILSRLT-GEE-LRTQEVSEKTERGRHTTTGVRLIPFGKGSFVGDTPGFS 227 (302)
T ss_dssp TCEEEEECSTTSSHHHHHHHHH-SCC-CCCSCC---------CCCCEEEEEETTTEEEESSCCCS
T ss_pred CcEEEEECCCCCCHHHHHHHHH-Hhh-CcccccccccCCCCCceeeEEEEEcCCCcEEEECcCcC
Confidence 4588999999999999999999 632 2223222 255554444443345889999985
No 205
>3q5d_A Atlastin-1; G protein, GTPase, GDP/GTP binding, hydrolase; HET: GDP; 2.70A {Homo sapiens} PDB: 3q5e_A* 3qnu_A* 3qof_A*
Probab=98.22 E-value=2e-06 Score=75.68 Aligned_cols=25 Identities=24% Similarity=0.406 Sum_probs=22.1
Q ss_pred CCCeEEEEecCCCcHHHHHHHHhhc
Q 029512 91 DLPEIAFAGRSNVGKSSMLNALTRQ 115 (192)
Q Consensus 91 ~~~~i~lvG~~n~GKStlin~L~~~ 115 (192)
+...|+|+|++++|||||+|.|+|.
T Consensus 66 ~v~vVsV~G~~~~GKStLLN~llg~ 90 (447)
T 3q5d_A 66 EVVAVSVAGAFRKGKSFLMDFMLRY 90 (447)
T ss_dssp BEEEEEEEESTTSSHHHHHHHHHHH
T ss_pred ceEEEEEECCCCCcHHHHHHHHhhh
Confidence 3458999999999999999999974
No 206
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=98.21 E-value=3.9e-06 Score=77.13 Aligned_cols=83 Identities=20% Similarity=0.242 Sum_probs=51.9
Q ss_pred CCCeEEEEecCCCcHHHHHHHHhhccCc----eee------cC------CCCce---eEEEEEeeCCeEEEEECCCCCCC
Q 029512 91 DLPEIAFAGRSNVGKSSMLNALTRQWGV----VRT------SD------KPGLT---QTINFFKLGTKLCLVDLPGYGFA 151 (192)
Q Consensus 91 ~~~~i~lvG~~n~GKStlin~L~~~~~~----~~~------~~------~~g~T---~~~~~~~~~~~~~lvDtPG~~~~ 151 (192)
...+|+++|.+|+|||||+++|++.... ..+ .+ ..+.| +.......+..+.+|||||..+-
T Consensus 8 ~~~~i~IiG~~gaGKTTLl~~L~~~~~~~~~~G~V~~g~~~~d~~~~e~~~giti~~~~~~~~~~~~~~nliDTpG~~~f 87 (665)
T 2dy1_A 8 MIRTVALVGHAGSGKTTLTEALLYKTGAKERRGRVEEGTTTTDYTPEAKLHRTTVRTGVAPLLFRGHRVFLLDAPGYGDF 87 (665)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCGGGTCCSSCCSHHHHHTTSCCSCEEEEEEETTEEEEEEECCCSGGG
T ss_pred CCcEEEEECCCCChHHHHHHHHHHhcCCCCccceecCCcccccCCHHHHhcCCeEEecceEEeeCCEEEEEEeCCCccch
Confidence 3568999999999999999999964211 000 00 01223 33344445788999999996431
Q ss_pred CChHHHHHHHHHHHhhhccCceeEEEEEEecCC
Q 029512 152 YAKEEVKDAWEELVSISYRNFWSCTCFLIYIFY 184 (192)
Q Consensus 152 ~~~~~~~~~~~~~~~l~~~~~~~~v~~vvD~s~ 184 (192)
...+... .+.+|.+++|+|+..
T Consensus 88 ------~~~~~~~-----l~~ad~~ilVvD~~~ 109 (665)
T 2dy1_A 88 ------VGEIRGA-----LEAADAALVAVSAEA 109 (665)
T ss_dssp ------HHHHHHH-----HHHCSEEEEEEETTT
T ss_pred ------HHHHHHH-----HhhcCcEEEEEcCCc
Confidence 1112111 235789999999754
No 207
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=98.19 E-value=7e-07 Score=76.43 Aligned_cols=58 Identities=34% Similarity=0.405 Sum_probs=38.0
Q ss_pred CCeEEEEecCCCcHHHHHHHHhhccCceeecCCC---C----ceeEEEEEeeCCeEEEEECCCCC
Q 029512 92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKP---G----LTQTINFFKLGTKLCLVDLPGYG 149 (192)
Q Consensus 92 ~~~i~lvG~~n~GKStlin~L~~~~~~~~~~~~~---g----~T~~~~~~~~~~~~~lvDtPG~~ 149 (192)
+-.++|+|++|||||||+|.|+|......++... | +|+....+.......++||||+.
T Consensus 215 G~~~~lvG~sG~GKSTLln~L~g~~~~~~~G~I~~~~G~g~~tt~~~~i~~v~q~~~l~dtpgv~ 279 (358)
T 2rcn_A 215 GRISIFAGQSGVGKSSLLNALLGLQNEILTNDVSNVSGLGQHTTTAARLYHFPHGGDVIDSPGVR 279 (358)
T ss_dssp TSEEEEECCTTSSHHHHHHHHHCCSSCCCCC-------------CCCEEEECTTSCEEEECHHHH
T ss_pred CCEEEEECCCCccHHHHHHHHhccccccccCCccccCCCCccceEEEEEEEECCCCEecCcccHH
Confidence 3489999999999999999999863202222211 2 44444555555556789999974
No 208
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=98.18 E-value=1.3e-06 Score=72.69 Aligned_cols=58 Identities=28% Similarity=0.331 Sum_probs=30.1
Q ss_pred CCeEEEEecCCCcHHHHHHHHhhccCceeecCCC------CceeEEE---E----EeeCCeEEEEECCCCCC
Q 029512 92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKP------GLTQTIN---F----FKLGTKLCLVDLPGYGF 150 (192)
Q Consensus 92 ~~~i~lvG~~n~GKStlin~L~~~~~~~~~~~~~------g~T~~~~---~----~~~~~~~~lvDtPG~~~ 150 (192)
..+|+++|++|+|||||+|.|++.. ....+..+ ..|.... . ......+.++||||++.
T Consensus 18 ~~~I~lvG~nG~GKSTLl~~L~g~~-~~~~~gi~~~g~~~~~t~~~~~~~~~~q~~~~~~~ltv~Dt~g~~~ 88 (301)
T 2qnr_A 18 EFTLMVVGESGLGKSTLINSLFLTD-LYPERVISGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYGD 88 (301)
T ss_dssp CEEEEEEEETTSSHHHHHHHHHC-------------------------CEEEEC---CCEEEEEEEEC----
T ss_pred CEEEEEECCCCCCHHHHHHHHhCCC-ccCCCCcccCCcccCCcceEeeEEEEecCCCcccCcchhhhhhhhh
Confidence 4588999999999999999999851 12111111 0111111 1 11235789999999964
No 209
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=98.10 E-value=1.4e-06 Score=72.44 Aligned_cols=58 Identities=34% Similarity=0.402 Sum_probs=36.8
Q ss_pred CCeEEEEecCCCcHHHHHHHHhhccCceeecCC-------CCceeEEEEEeeCCeEEEEECCCCCC
Q 029512 92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDK-------PGLTQTINFFKLGTKLCLVDLPGYGF 150 (192)
Q Consensus 92 ~~~i~lvG~~n~GKStlin~L~~~~~~~~~~~~-------~g~T~~~~~~~~~~~~~lvDtPG~~~ 150 (192)
...++++|++|+|||||+|+|.+... ..++.. ..+|+..........-.++|+||+..
T Consensus 169 geiv~l~G~sG~GKSTll~~l~g~~~-~~~G~i~~~~~~g~~~t~~~~~~~~~~~g~v~q~p~~~~ 233 (301)
T 1u0l_A 169 GKISTMAGLSGVGKSSLLNAINPGLK-LRVSEVSEKLQRGRHTTTTAQLLKFDFGGYVVDTPGFAN 233 (301)
T ss_dssp SSEEEEECSTTSSHHHHHHHHSTTCC-CC-------------CCCSCCEEECTTSCEEESSCSSTT
T ss_pred CCeEEEECCCCCcHHHHHHHhccccc-ccccceecccCCCCCceeeeEEEEcCCCCEEEECcCCCc
Confidence 45889999999999999999998632 222221 12444333333333458899999754
No 210
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=98.09 E-value=3.1e-06 Score=73.76 Aligned_cols=59 Identities=25% Similarity=0.314 Sum_probs=37.0
Q ss_pred CCeEEEEecCCCcHHHHHHHHhhccCceeec---CCCCceeEEEEEee--CCeEEEEECCCCCC
Q 029512 92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTS---DKPGLTQTINFFKL--GTKLCLVDLPGYGF 150 (192)
Q Consensus 92 ~~~i~lvG~~n~GKStlin~L~~~~~~~~~~---~~~g~T~~~~~~~~--~~~~~lvDtPG~~~ 150 (192)
...++|+|++|+|||||+|.|+|.......+ +...+|+....+.. ...+.++|+||++.
T Consensus 69 ~~~valvG~nGaGKSTLln~L~Gl~~p~~GsI~~~g~~~t~~~~v~q~~~~~~ltv~D~~g~~~ 132 (413)
T 1tq4_A 69 VLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMERHPYKHPNIPNVVFWDLPGIGS 132 (413)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC----CCCEEEECSSCTTEEEEECCCGGG
T ss_pred CeEEEEECCCCCcHHHHHHHHhCCCCccCceEEECCeecceeEEeccccccCCeeehHhhcccc
Confidence 3489999999999999999999953211111 11112332222222 24689999999875
No 211
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=98.07 E-value=4.2e-06 Score=73.28 Aligned_cols=88 Identities=15% Similarity=0.029 Sum_probs=53.7
Q ss_pred CCeEEEEecCCCcHHHHHHHHhhcc-----CceeecCC------------------------CCceeEEEEE-------e
Q 029512 92 LPEIAFAGRSNVGKSSMLNALTRQW-----GVVRTSDK------------------------PGLTQTINFF-------K 135 (192)
Q Consensus 92 ~~~i~lvG~~n~GKStlin~L~~~~-----~~~~~~~~------------------------~g~T~~~~~~-------~ 135 (192)
...|+++|.+|+||||+++.|.+.. .+..++.- .++|+++... .
T Consensus 99 ~~vI~ivG~~GvGKTTla~~La~~l~~~G~kVllv~~D~~r~~a~~qL~~~~~~~gv~v~~~~~~~~dp~~i~~~~l~~~ 178 (432)
T 2v3c_C 99 QNVILLVGIQGSGKTTTAAKLARYIQKRGLKPALIAADTYRPAAYEQLKQLAEKIHVPIYGDETRTKSPVDIVKEGMEKF 178 (432)
T ss_dssp CCCEEEECCSSSSTTHHHHHHHHHHHHHHCCEEEECCSCCCTTGGGSSHHHHHHSSCCEECCSSSCCSSSTTHHHHHHTT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeccccCchHHHHHHHhhhccCcceEecCCCCCCHHHHHHHHHHHh
Confidence 4589999999999999999999741 22222211 1123322100 1
Q ss_pred eCCeEEEEECCCCCCCCChHHHHHHHHHHHhhhccCceeEEEEEEecCC
Q 029512 136 LGTKLCLVDLPGYGFAYAKEEVKDAWEELVSISYRNFWSCTCFLIYIFY 184 (192)
Q Consensus 136 ~~~~~~lvDtPG~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~~vvD~s~ 184 (192)
.+..+.|+||||.... ... .+..+..+......|.+++|+|+..
T Consensus 179 ~~~D~vIIDT~G~~~~--~~~---l~~~l~~i~~~~~~d~vllVvda~~ 222 (432)
T 2v3c_C 179 KKADVLIIDTAGRHKE--EKG---LLEEMKQIKEITNPDEIILVIDGTI 222 (432)
T ss_dssp SSCSEEEEECCCSCSS--HHH---HHHHHHHTTSSSCCSEEEEEEEGGG
T ss_pred hCCCEEEEcCCCCccc--cHH---HHHHHHHHHHHhcCcceeEEeeccc
Confidence 3568999999997642 222 2233333444446789999999854
No 212
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=98.01 E-value=6e-07 Score=70.77 Aligned_cols=62 Identities=19% Similarity=0.116 Sum_probs=39.7
Q ss_pred CCCCCCCeEEEEecCCCcHHHHHHHHhhccCceeecCCCCceeEEEEEe-eCCeEEEEECCCC
Q 029512 87 FPAPDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFK-LGTKLCLVDLPGY 148 (192)
Q Consensus 87 ~~~~~~~~i~lvG~~n~GKStlin~L~~~~~~~~~~~~~g~T~~~~~~~-~~~~~~lvDtPG~ 148 (192)
.+...+..++|+|++|+|||||+|.|++..........+.+|+.+.... .|..+.++|.+.|
T Consensus 14 ~~~~~g~~ivl~GPSGaGKsTL~~~L~~~~~~~~~~~vs~TTR~p~~gE~~G~~y~fvs~~~f 76 (197)
T 3ney_A 14 LYFQGRKTLVLIGASGVGRSHIKNALLSQNPEKFVYPVPYTTRPPRKSEEDGKEYHFISTEEM 76 (197)
T ss_dssp --CCSCCEEEEECCTTSSHHHHHHHHHHHCTTTEECCCCEECSCCCTTCCTTSSCEECCHHHH
T ss_pred CCCCCCCEEEEECcCCCCHHHHHHHHHhhCCccEEeeecccccCCcCCeeccccceeccHHHh
Confidence 3444566899999999999999999998642124455556777654322 2445555554443
No 213
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=97.99 E-value=1.1e-06 Score=70.52 Aligned_cols=22 Identities=18% Similarity=0.389 Sum_probs=20.1
Q ss_pred CCeEEEEecCCCcHHHHHHHHh
Q 029512 92 LPEIAFAGRSNVGKSSMLNALT 113 (192)
Q Consensus 92 ~~~i~lvG~~n~GKStlin~L~ 113 (192)
...+++.|..||||||+++.|.
T Consensus 14 ~~i~~~~GkgGvGKTTl~~~La 35 (262)
T 1yrb_A 14 SMIVVFVGTAGSGKTTLTGEFG 35 (262)
T ss_dssp CEEEEEECSTTSSHHHHHHHHH
T ss_pred eEEEEEeCCCCCCHHHHHHHHH
Confidence 4578899999999999999998
No 214
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=97.96 E-value=4.8e-05 Score=69.17 Aligned_cols=25 Identities=48% Similarity=0.660 Sum_probs=23.1
Q ss_pred CCCeEEEEecCCCcHHHHHHHHhhc
Q 029512 91 DLPEIAFAGRSNVGKSSMLNALTRQ 115 (192)
Q Consensus 91 ~~~~i~lvG~~n~GKStlin~L~~~ 115 (192)
..|.++|+|++|+|||||+++|+|.
T Consensus 44 ~lp~iaIvG~nGsGKSTLL~~I~Gl 68 (608)
T 3szr_A 44 ALPAIAVIGDQSSGKSSVLEALSGV 68 (608)
T ss_dssp CCCCEECCCCTTSCHHHHHHHHHSC
T ss_pred cCCeEEEECCCCChHHHHHHHHhCC
Confidence 5678999999999999999999986
No 215
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=97.94 E-value=4.5e-05 Score=66.94 Aligned_cols=88 Identities=15% Similarity=0.142 Sum_probs=51.3
Q ss_pred CCeEEEEecCCCcHHHHHHHHhhc-----cCceeecCCCCce------------eEEEEEe-------------------
Q 029512 92 LPEIAFAGRSNVGKSSMLNALTRQ-----WGVVRTSDKPGLT------------QTINFFK------------------- 135 (192)
Q Consensus 92 ~~~i~lvG~~n~GKStlin~L~~~-----~~~~~~~~~~g~T------------~~~~~~~------------------- 135 (192)
...|+++|.+|+||||+++.|+.. ..+..+..-++.. .....+.
T Consensus 100 p~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVllv~~D~~R~aa~eqL~~~~~~~gvpv~~~~~~~dp~~i~~~al~~a~ 179 (443)
T 3dm5_A 100 PTILLMVGIQGSGKTTTVAKLARYFQKRGYKVGVVCSDTWRPGAYHQLRQLLDRYHIEVFGNPQEKDAIKLAKEGVDYFK 179 (443)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCCSSTHHHHHHHHHHGGGTCEEECCTTCCCHHHHHHHHHHHHH
T ss_pred CeEEEEECcCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcchhHHHHHHHHHHhcCCcEEecCCCCCHHHHHHHHHHHHH
Confidence 458899999999999999999842 1222222111100 0000110
Q ss_pred -eCCeEEEEECCCCCCCCChHHHHHHHHHHHhhhccCceeEEEEEEecCC
Q 029512 136 -LGTKLCLVDLPGYGFAYAKEEVKDAWEELVSISYRNFWSCTCFLIYIFY 184 (192)
Q Consensus 136 -~~~~~~lvDtPG~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~~vvD~s~ 184 (192)
.+..+.|+||||.... .......+..+.. ....+.+++|+|+..
T Consensus 180 ~~~~DvVIIDTaGrl~~--d~~lm~el~~i~~---~~~pd~vlLVvDA~~ 224 (443)
T 3dm5_A 180 SKGVDIIIVDTAGRHKE--DKALIEEMKQISN---VIHPHEVILVIDGTI 224 (443)
T ss_dssp HTTCSEEEEECCCCSSC--CHHHHHHHHHHHH---HHCCSEEEEEEEGGG
T ss_pred hCCCCEEEEECCCcccc--hHHHHHHHHHHHH---hhcCceEEEEEeCCC
Confidence 2478999999997542 2333333333332 234688999999864
No 216
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=97.77 E-value=4.1e-06 Score=65.41 Aligned_cols=24 Identities=13% Similarity=0.261 Sum_probs=22.0
Q ss_pred CCeEEEEecCCCcHHHHHHHHhhc
Q 029512 92 LPEIAFAGRSNVGKSSMLNALTRQ 115 (192)
Q Consensus 92 ~~~i~lvG~~n~GKStlin~L~~~ 115 (192)
.+.|+++|.+|+|||||+|.|++.
T Consensus 30 ~~~i~i~G~~g~GKTTl~~~l~~~ 53 (221)
T 2wsm_A 30 TVAVNIMGAIGSGKTLLIERTIER 53 (221)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHH
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHH
Confidence 469999999999999999999975
No 217
>3vqt_A RF-3, peptide chain release factor 3; translation, GTPase; HET: GDP; 1.80A {Desulfovibrio vulgaris} PDB: 3vr1_A*
Probab=97.75 E-value=3.1e-05 Score=69.60 Aligned_cols=80 Identities=20% Similarity=0.182 Sum_probs=49.0
Q ss_pred CeEEEEecCCCcHHHHHHHHhhccCc----e----------eecCC------CCcee---EEEEEeeCCeEEEEECCCCC
Q 029512 93 PEIAFAGRSNVGKSSMLNALTRQWGV----V----------RTSDK------PGLTQ---TINFFKLGTKLCLVDLPGYG 149 (192)
Q Consensus 93 ~~i~lvG~~n~GKStlin~L~~~~~~----~----------~~~~~------~g~T~---~~~~~~~~~~~~lvDtPG~~ 149 (192)
.+|+|+|..++|||||.-+|+-..+. . .+.+. -|.|. -..+.+.+..+.|+||||..
T Consensus 32 RNiaIiaHvdaGKTTLtE~lL~~tG~i~~~G~V~~~~~~~~~~~D~~~~EreRGITI~s~~~~~~~~~~~iNlIDTPGHv 111 (548)
T 3vqt_A 32 RTFAIISHPDAGKTTLTEKLLLFGGAIQMAGSVKARKAARHATSDWMAMERERGISVTTSVMQFPYRDRVVNLLDTPGHQ 111 (548)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHTTCHHHHHHHHHC--------------------CTTTEEEEEETTEEEEEECCCCGG
T ss_pred ceEEEEeCCCCCHHHHHHHHHHhcCcccccceeecCccccccccCChHHHHHCCCcEeeceEEEEECCEEEEEEeCCCcH
Confidence 38999999999999999999732110 0 11111 12221 22345568899999999975
Q ss_pred CCCChHHHHHHHHHHHhhhccCceeEEEEEEecC
Q 029512 150 FAYAKEEVKDAWEELVSISYRNFWSCTCFLIYIF 183 (192)
Q Consensus 150 ~~~~~~~~~~~~~~~~~l~~~~~~~~v~~vvD~s 183 (192)
+- ..+.... .+.+|..++|||+.
T Consensus 112 DF--~~Ev~ra---------L~~~DgAvlVvda~ 134 (548)
T 3vqt_A 112 DF--SEDTYRV---------LTAVDSALVVIDAA 134 (548)
T ss_dssp GC--SHHHHHH---------HHSCSEEEEEEETT
T ss_pred HH--HHHHHHH---------HHhcCceEEEeecC
Confidence 41 1111121 13579999999985
No 218
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=97.73 E-value=0.0001 Score=64.47 Aligned_cols=24 Identities=21% Similarity=0.149 Sum_probs=21.0
Q ss_pred CCCeEEEEecCCCcHHHHHHHHhh
Q 029512 91 DLPEIAFAGRSNVGKSSMLNALTR 114 (192)
Q Consensus 91 ~~~~i~lvG~~n~GKStlin~L~~ 114 (192)
....|+++|++|+||||+++.|..
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~ 119 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAY 119 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 345889999999999999999983
No 219
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=97.61 E-value=3.1e-05 Score=59.14 Aligned_cols=25 Identities=20% Similarity=0.375 Sum_probs=22.3
Q ss_pred CCeEEEEecCCCcHHHHHHHHhhcc
Q 029512 92 LPEIAFAGRSNVGKSSMLNALTRQW 116 (192)
Q Consensus 92 ~~~i~lvG~~n~GKStlin~L~~~~ 116 (192)
+..++|+|+||+|||||++.|.+..
T Consensus 5 g~~i~i~GpsGsGKSTL~~~L~~~~ 29 (180)
T 1kgd_A 5 RKTLVLLGAHGVGRRHIKNTLITKH 29 (180)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHC
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhC
Confidence 4589999999999999999999863
No 220
>4fn5_A EF-G 1, elongation factor G 1; translation, translation-antibiotic compl; HET: 0UO; 2.90A {Pseudomonas aeruginosa}
Probab=97.47 E-value=0.0002 Score=66.09 Aligned_cols=82 Identities=18% Similarity=0.199 Sum_probs=47.4
Q ss_pred CCCeEEEEecCCCcHHHHHHHHhhccC----ceeec------C------CCCceeEE---EEEee-------CCeEEEEE
Q 029512 91 DLPEIAFAGRSNVGKSSMLNALTRQWG----VVRTS------D------KPGLTQTI---NFFKL-------GTKLCLVD 144 (192)
Q Consensus 91 ~~~~i~lvG~~n~GKStlin~L~~~~~----~~~~~------~------~~g~T~~~---~~~~~-------~~~~~lvD 144 (192)
+..+|+|+|+..+|||||..+|+...+ ...+. + .-|.|... .+.+. +..+.|+|
T Consensus 12 ~IRNi~IiaHvd~GKTTL~d~LL~~~g~i~~~g~v~~~~~~~D~~~~E~eRGITI~s~~~s~~~~~~~~~~~~~~iNlID 91 (709)
T 4fn5_A 12 RYRNIGICAHVDAGKTTTTERVLFYTGVNHKLGEVHDGAATTDWMVQEQERGITITSAAVTTFWKGSRGQYDNYRVNVID 91 (709)
T ss_dssp GEEEEEEECCSSSCHHHHHHHHHHHHHHHHHC------------------------CCEEEEEECCTTSCSCCEEEEEEC
T ss_pred HCeEEEEEcCCCCCHHHHHHHHHHhcCCCCcCceecCCCccCCChHHHHHcCCeEEeeeEEEEeccCcCCCCCEEEEEEe
Confidence 345899999999999999999973321 01111 1 11233221 12221 46799999
Q ss_pred CCCCCCCCChHHHHHHHHHHHhhhccCceeEEEEEEecC
Q 029512 145 LPGYGFAYAKEEVKDAWEELVSISYRNFWSCTCFLIYIF 183 (192)
Q Consensus 145 tPG~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~~vvD~s 183 (192)
|||..+- ..+...+ + +.+|+.++|||+.
T Consensus 92 TPGHvDF--~~Ev~~a---L------r~~DgavlvVDav 119 (709)
T 4fn5_A 92 TPGHVDF--TIEVERS---L------RVLDGAVVVFCGT 119 (709)
T ss_dssp CCSCTTC--HHHHHHH---H------HHCSEEEEEEETT
T ss_pred CCCCccc--HHHHHHH---H------HHhCeEEEEEECC
Confidence 9997651 2222222 1 3479999999985
No 221
>3j25_A Tetracycline resistance protein TETM; antibiotic resistance, translation; HET: GCP; 7.20A {Enterococcus faecalis}
Probab=97.45 E-value=2.7e-05 Score=71.20 Aligned_cols=80 Identities=23% Similarity=0.235 Sum_probs=50.7
Q ss_pred CeEEEEecCCCcHHHHHHHHhhccC----ceeec------CCC------CceeEE---EEEeeCCeEEEEECCCCCCCCC
Q 029512 93 PEIAFAGRSNVGKSSMLNALTRQWG----VVRTS------DKP------GLTQTI---NFFKLGTKLCLVDLPGYGFAYA 153 (192)
Q Consensus 93 ~~i~lvG~~n~GKStlin~L~~~~~----~~~~~------~~~------g~T~~~---~~~~~~~~~~lvDtPG~~~~~~ 153 (192)
.+|+|+|+.++|||||..+|+...+ ...+. +.. |.|... .+.+.+..+.|+||||..+-
T Consensus 3 RNi~IiaHvD~GKTTL~e~LL~~~G~i~~~g~v~~g~~~~D~~~~EreRGITI~s~~~~~~~~~~~iNlIDTPGH~DF-- 80 (638)
T 3j25_A 3 INIGVLAHVDAGKTTLTESLLYNSGAITELGSVDKGTTRTDNTLLERQRGITIQTGITSFQWENTKVNIIDTPGHMDF-- 80 (638)
T ss_dssp CCCEEECCSTTSSHHHHHHHHHHHTCCSSCSSCCCSCCSTTCSTTHHHHSSCSSCCCCCCBCSSCBCCCEECCCSSST--
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHcCCCccccccccCCcccCCcHHHHhCCCcEEeeeEEEEECCEEEEEEECCCcHHH--
Confidence 4789999999999999999974321 01111 111 233322 23445789999999997641
Q ss_pred hHHHHHHHHHHHhhhccCceeEEEEEEecC
Q 029512 154 KEEVKDAWEELVSISYRNFWSCTCFLIYIF 183 (192)
Q Consensus 154 ~~~~~~~~~~~~~l~~~~~~~~v~~vvD~s 183 (192)
..+... ..+.+|..++|||+.
T Consensus 81 ~~Ev~r---------aL~~~DgavlVVDa~ 101 (638)
T 3j25_A 81 LAEVYR---------SLSVLDGAILLISAK 101 (638)
T ss_dssp HHHHHH---------HHTTCSEEECCEESS
T ss_pred HHHHHH---------HHHHhCEEEEEEeCC
Confidence 111111 224679999999985
No 222
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=97.43 E-value=6.9e-05 Score=58.24 Aligned_cols=24 Identities=29% Similarity=0.511 Sum_probs=21.2
Q ss_pred CCeEEEEecCCCcHHHHHHHHhhc
Q 029512 92 LPEIAFAGRSNVGKSSMLNALTRQ 115 (192)
Q Consensus 92 ~~~i~lvG~~n~GKStlin~L~~~ 115 (192)
+..++|+|++|+|||||++.|++.
T Consensus 4 g~~i~lvGpsGaGKSTLl~~L~~~ 27 (198)
T 1lvg_A 4 PRPVVLSGPSGAGKSTLLKKLFQE 27 (198)
T ss_dssp -CCEEEECCTTSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHhh
Confidence 347899999999999999999985
No 223
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=97.40 E-value=0.00011 Score=60.96 Aligned_cols=25 Identities=24% Similarity=0.332 Sum_probs=21.8
Q ss_pred CCCeEEEEecCCCcHHHHHHHHhhc
Q 029512 91 DLPEIAFAGRSNVGKSSMLNALTRQ 115 (192)
Q Consensus 91 ~~~~i~lvG~~n~GKStlin~L~~~ 115 (192)
....++++|++|+||||+++.|.+.
T Consensus 104 ~g~vi~lvG~~GsGKTTl~~~LA~~ 128 (296)
T 2px0_A 104 HSKYIVLFGSTGAGKTTTLAKLAAI 128 (296)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHH
Confidence 3458999999999999999999853
No 224
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=97.32 E-value=0.00014 Score=56.63 Aligned_cols=26 Identities=27% Similarity=0.371 Sum_probs=22.8
Q ss_pred CCCeEEEEecCCCcHHHHHHHHhhcc
Q 029512 91 DLPEIAFAGRSNVGKSSMLNALTRQW 116 (192)
Q Consensus 91 ~~~~i~lvG~~n~GKStlin~L~~~~ 116 (192)
.+-.++|+|++|+|||||++.|+|..
T Consensus 19 ~Gei~~l~GpnGsGKSTLl~~l~gl~ 44 (207)
T 1znw_A 19 VGRVVVLSGPSAVGKSTVVRCLRERI 44 (207)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 34589999999999999999999863
No 225
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=97.30 E-value=0.0003 Score=58.38 Aligned_cols=23 Identities=22% Similarity=0.249 Sum_probs=20.5
Q ss_pred CCeEEEEecCCCcHHHHHHHHhh
Q 029512 92 LPEIAFAGRSNVGKSSMLNALTR 114 (192)
Q Consensus 92 ~~~i~lvG~~n~GKStlin~L~~ 114 (192)
...++++|.+|+||||+++.|.+
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~ 120 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAY 120 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 44788999999999999999984
No 226
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=97.30 E-value=0.00014 Score=55.91 Aligned_cols=23 Identities=22% Similarity=0.566 Sum_probs=21.0
Q ss_pred eEEEEecCCCcHHHHHHHHhhcc
Q 029512 94 EIAFAGRSNVGKSSMLNALTRQW 116 (192)
Q Consensus 94 ~i~lvG~~n~GKStlin~L~~~~ 116 (192)
.++|+|++|+|||||++.|+|..
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l 24 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERL 24 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 68999999999999999999863
No 227
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=97.26 E-value=0.00019 Score=55.14 Aligned_cols=24 Identities=25% Similarity=0.376 Sum_probs=21.8
Q ss_pred CCeEEEEecCCCcHHHHHHHHhhc
Q 029512 92 LPEIAFAGRSNVGKSSMLNALTRQ 115 (192)
Q Consensus 92 ~~~i~lvG~~n~GKStlin~L~~~ 115 (192)
+..++|+|++|+|||||++.|.+.
T Consensus 7 g~ii~l~Gp~GsGKSTl~~~L~~~ 30 (205)
T 3tr0_A 7 ANLFIISAPSGAGKTSLVRALVKA 30 (205)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CcEEEEECcCCCCHHHHHHHHHhh
Confidence 457999999999999999999985
No 228
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=97.26 E-value=0.00016 Score=57.07 Aligned_cols=25 Identities=24% Similarity=0.551 Sum_probs=22.4
Q ss_pred CCeEEEEecCCCcHHHHHHHHhhcc
Q 029512 92 LPEIAFAGRSNVGKSSMLNALTRQW 116 (192)
Q Consensus 92 ~~~i~lvG~~n~GKStlin~L~~~~ 116 (192)
+-.++|+|++|+|||||++.|++..
T Consensus 23 G~~~~lvGpsGsGKSTLl~~L~g~~ 47 (218)
T 1z6g_A 23 IYPLVICGPSGVGKGTLIKKLLNEF 47 (218)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhC
Confidence 4578999999999999999999863
No 229
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=97.26 E-value=0.00013 Score=55.75 Aligned_cols=23 Identities=35% Similarity=0.605 Sum_probs=20.8
Q ss_pred eEEEEecCCCcHHHHHHHHhhcc
Q 029512 94 EIAFAGRSNVGKSSMLNALTRQW 116 (192)
Q Consensus 94 ~i~lvG~~n~GKStlin~L~~~~ 116 (192)
.++|+|++|+|||||++.|++..
T Consensus 3 ii~l~GpsGaGKsTl~~~L~~~~ 25 (186)
T 3a00_A 3 PIVISGPSGTGKSTLLKKLFAEY 25 (186)
T ss_dssp CEEEESSSSSSHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHhhC
Confidence 57899999999999999999753
No 230
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=97.25 E-value=0.00015 Score=56.40 Aligned_cols=38 Identities=26% Similarity=0.276 Sum_probs=26.1
Q ss_pred eEEEEecCCCcHHHHHHHHhhccCceeecCCCCceeEE
Q 029512 94 EIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTI 131 (192)
Q Consensus 94 ~i~lvG~~n~GKStlin~L~~~~~~~~~~~~~g~T~~~ 131 (192)
.|+|+|+||+||+||++.|+........-..+.|||.+
T Consensus 3 pIVi~GPSG~GK~Tl~~~L~~~~~~~~~~svs~TTR~p 40 (186)
T 1ex7_A 3 PIVISGPSGTGKSTLLKKLFAEYPDSFGFSVSSTTRTP 40 (186)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHCTTTEEECCCEECSCC
T ss_pred EEEEECCCCCCHHHHHHHHHHhCCCCeEEEEEEeccCC
Confidence 37899999999999999998753212223344455543
No 231
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=97.24 E-value=0.00023 Score=55.53 Aligned_cols=26 Identities=27% Similarity=0.280 Sum_probs=22.9
Q ss_pred CCCeEEEEecCCCcHHHHHHHHhhcc
Q 029512 91 DLPEIAFAGRSNVGKSSMLNALTRQW 116 (192)
Q Consensus 91 ~~~~i~lvG~~n~GKStlin~L~~~~ 116 (192)
.+..++|+|++|+|||||++.|++..
T Consensus 7 ~g~~i~l~GpsGsGKsTl~~~L~~~~ 32 (208)
T 3tau_A 7 RGLLIVLSGPSGVGKGTVREAVFKDP 32 (208)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHST
T ss_pred CCcEEEEECcCCCCHHHHHHHHHhhC
Confidence 35589999999999999999999864
No 232
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=97.23 E-value=0.00019 Score=56.95 Aligned_cols=26 Identities=27% Similarity=0.276 Sum_probs=23.2
Q ss_pred CCCeEEEEecCCCcHHHHHHHHhhcc
Q 029512 91 DLPEIAFAGRSNVGKSSMLNALTRQW 116 (192)
Q Consensus 91 ~~~~i~lvG~~n~GKStlin~L~~~~ 116 (192)
.+..++|+|++|+|||||++.|++..
T Consensus 15 ~G~ii~l~GpsGsGKSTLlk~L~g~~ 40 (219)
T 1s96_A 15 QGTLYIVSAPSGAGKSSLIQALLKTQ 40 (219)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CCcEEEEECCCCCCHHHHHHHHhccC
Confidence 45589999999999999999999864
No 233
>4ido_A Atlastin-1; GTPase, GTP/GDP binding, hydrolase; HET: GDP; 2.09A {Homo sapiens} PDB: 4idn_A* 3q5d_A* 3q5e_A* 4idq_A* 4idp_A* 3qnu_A* 3qof_A*
Probab=97.22 E-value=0.00092 Score=58.77 Aligned_cols=23 Identities=22% Similarity=0.398 Sum_probs=20.2
Q ss_pred CCCeEEEEecCCCcHHHHHHHHh
Q 029512 91 DLPEIAFAGRSNVGKSSMLNALT 113 (192)
Q Consensus 91 ~~~~i~lvG~~n~GKStlin~L~ 113 (192)
+...|+++|..++|||+|+|.|+
T Consensus 66 ~v~vvsv~G~~~~gks~l~N~ll 88 (457)
T 4ido_A 66 EVVAVSVAGAFRKGKSFLMDFML 88 (457)
T ss_dssp BEEEEEEEEBTTSSHHHHHHHHH
T ss_pred ceEEEEEECCCCCchhHHHHHHH
Confidence 45688899999999999999776
No 234
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=97.20 E-value=0.00022 Score=57.15 Aligned_cols=26 Identities=31% Similarity=0.299 Sum_probs=22.9
Q ss_pred CCCeEEEEecCCCcHHHHHHHHhhcc
Q 029512 91 DLPEIAFAGRSNVGKSSMLNALTRQW 116 (192)
Q Consensus 91 ~~~~i~lvG~~n~GKStlin~L~~~~ 116 (192)
.+-.++|+|++|+|||||++.|+|-.
T Consensus 30 ~Ge~~~iiG~nGsGKSTLl~~l~Gl~ 55 (235)
T 3tif_A 30 EGEFVSIMGPSGSGKSTMLNIIGCLD 55 (235)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhcCC
Confidence 34589999999999999999999863
No 235
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=97.17 E-value=0.0015 Score=57.04 Aligned_cols=22 Identities=23% Similarity=0.353 Sum_probs=19.9
Q ss_pred CCeEEEEecCCCcHHHHHHHHh
Q 029512 92 LPEIAFAGRSNVGKSSMLNALT 113 (192)
Q Consensus 92 ~~~i~lvG~~n~GKStlin~L~ 113 (192)
...|+++|.+|+||||+...|.
T Consensus 100 ~~vI~ivG~~GvGKTT~a~~LA 121 (433)
T 2xxa_A 100 PAVVLMAGLQGAGKTTSVGKLG 121 (433)
T ss_dssp SEEEEEECSTTSSHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHH
Confidence 4578899999999999999998
No 236
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=97.13 E-value=0.00028 Score=56.08 Aligned_cols=25 Identities=28% Similarity=0.205 Sum_probs=22.3
Q ss_pred CCeEEEEecCCCcHHHHHHHHhhcc
Q 029512 92 LPEIAFAGRSNVGKSSMLNALTRQW 116 (192)
Q Consensus 92 ~~~i~lvG~~n~GKStlin~L~~~~ 116 (192)
+-.++|+|++|+|||||++.|+|-.
T Consensus 30 Ge~~~iiG~nGsGKSTLl~~l~Gl~ 54 (224)
T 2pcj_A 30 GEFVSIIGASGSGKSTLLYILGLLD 54 (224)
T ss_dssp TCEEEEEECTTSCHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCC
Confidence 4488999999999999999999863
No 237
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=97.11 E-value=0.00025 Score=55.21 Aligned_cols=26 Identities=27% Similarity=0.395 Sum_probs=23.0
Q ss_pred CCCeEEEEecCCCcHHHHHHHHhhcc
Q 029512 91 DLPEIAFAGRSNVGKSSMLNALTRQW 116 (192)
Q Consensus 91 ~~~~i~lvG~~n~GKStlin~L~~~~ 116 (192)
....|+|+|++|+|||||++.|.+..
T Consensus 21 ~g~~v~I~G~sGsGKSTl~~~l~~~~ 46 (208)
T 3c8u_A 21 GRQLVALSGAPGSGKSTLSNPLAAAL 46 (208)
T ss_dssp SCEEEEEECCTTSCTHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 45689999999999999999999863
No 238
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=97.10 E-value=0.0003 Score=53.44 Aligned_cols=24 Identities=25% Similarity=0.350 Sum_probs=21.7
Q ss_pred CCeEEEEecCCCcHHHHHHHHhhc
Q 029512 92 LPEIAFAGRSNVGKSSMLNALTRQ 115 (192)
Q Consensus 92 ~~~i~lvG~~n~GKStlin~L~~~ 115 (192)
+..++|+|++|+|||||++.|.+.
T Consensus 9 g~~i~l~G~~GsGKSTl~~~La~~ 32 (191)
T 1zp6_A 9 GNILLLSGHPGSGKSTIAEALANL 32 (191)
T ss_dssp TEEEEEEECTTSCHHHHHHHHHTC
T ss_pred CeEEEEECCCCCCHHHHHHHHHhc
Confidence 447899999999999999999985
No 239
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=97.08 E-value=0.00033 Score=56.16 Aligned_cols=26 Identities=35% Similarity=0.464 Sum_probs=22.8
Q ss_pred CCCeEEEEecCCCcHHHHHHHHhhcc
Q 029512 91 DLPEIAFAGRSNVGKSSMLNALTRQW 116 (192)
Q Consensus 91 ~~~~i~lvG~~n~GKStlin~L~~~~ 116 (192)
.+-.++|+|++|+|||||++.|+|-.
T Consensus 30 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 55 (237)
T 2cbz_A 30 EGALVAVVGQVGCGKSSLLSALLAEM 55 (237)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTCS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 34589999999999999999999863
No 240
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=97.06 E-value=0.00036 Score=56.84 Aligned_cols=26 Identities=27% Similarity=0.259 Sum_probs=22.8
Q ss_pred CCCeEEEEecCCCcHHHHHHHHhhcc
Q 029512 91 DLPEIAFAGRSNVGKSSMLNALTRQW 116 (192)
Q Consensus 91 ~~~~i~lvG~~n~GKStlin~L~~~~ 116 (192)
.+-.++|+|++|+|||||++.|+|-.
T Consensus 31 ~Ge~~~liG~nGsGKSTLlk~l~Gl~ 56 (262)
T 1b0u_A 31 AGDVISIIGSSGSGKSTFLRCINFLE 56 (262)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 34588999999999999999999863
No 241
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=97.03 E-value=0.00034 Score=56.30 Aligned_cols=24 Identities=21% Similarity=0.256 Sum_probs=21.8
Q ss_pred CeEEEEecCCCcHHHHHHHHhhcc
Q 029512 93 PEIAFAGRSNVGKSSMLNALTRQW 116 (192)
Q Consensus 93 ~~i~lvG~~n~GKStlin~L~~~~ 116 (192)
-.++|+|++|+|||||++.|+|-.
T Consensus 25 e~~~liG~nGsGKSTLl~~l~Gl~ 48 (240)
T 2onk_A 25 DYCVLLGPTGAGKSVFLELIAGIV 48 (240)
T ss_dssp SEEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEEECCCCCCHHHHHHHHhCCC
Confidence 478999999999999999999863
No 242
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=97.03 E-value=0.00037 Score=54.30 Aligned_cols=24 Identities=21% Similarity=0.414 Sum_probs=22.1
Q ss_pred CCeEEEEecCCCcHHHHHHHHhhc
Q 029512 92 LPEIAFAGRSNVGKSSMLNALTRQ 115 (192)
Q Consensus 92 ~~~i~lvG~~n~GKStlin~L~~~ 115 (192)
.++|+++|.+|||||||+|.|+..
T Consensus 38 ~~~i~ivG~~gvGKTtl~~~l~~~ 61 (226)
T 2hf9_A 38 VVAFDFMGAIGSGKTLLIEKLIDN 61 (226)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHH
Confidence 569999999999999999999975
No 243
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=97.01 E-value=0.00039 Score=56.33 Aligned_cols=26 Identities=23% Similarity=0.282 Sum_probs=22.7
Q ss_pred CCCeEEEEecCCCcHHHHHHHHhhcc
Q 029512 91 DLPEIAFAGRSNVGKSSMLNALTRQW 116 (192)
Q Consensus 91 ~~~~i~lvG~~n~GKStlin~L~~~~ 116 (192)
.+-.++|+|++|+|||||++.|+|-.
T Consensus 32 ~Ge~~~liG~nGsGKSTLlk~l~Gl~ 57 (257)
T 1g6h_A 32 KGDVTLIIGPNGSGKSTLINVITGFL 57 (257)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 34588999999999999999999863
No 244
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=97.00 E-value=0.00043 Score=56.52 Aligned_cols=26 Identities=27% Similarity=0.284 Sum_probs=22.9
Q ss_pred CCCeEEEEecCCCcHHHHHHHHhhcc
Q 029512 91 DLPEIAFAGRSNVGKSSMLNALTRQW 116 (192)
Q Consensus 91 ~~~~i~lvG~~n~GKStlin~L~~~~ 116 (192)
.+-.++|+|++|+|||||++.|+|-.
T Consensus 49 ~Gei~~liG~NGsGKSTLlk~l~Gl~ 74 (263)
T 2olj_A 49 EGEVVVVIGPSGSGKSTFLRCLNLLE 74 (263)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEEcCCCCcHHHHHHHHHcCC
Confidence 34588999999999999999999863
No 245
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=97.00 E-value=0.00036 Score=56.07 Aligned_cols=25 Identities=44% Similarity=0.578 Sum_probs=22.3
Q ss_pred CCeEEEEecCCCcHHHHHHHHhhcc
Q 029512 92 LPEIAFAGRSNVGKSSMLNALTRQW 116 (192)
Q Consensus 92 ~~~i~lvG~~n~GKStlin~L~~~~ 116 (192)
+-.++|+|++|+|||||++.|+|-.
T Consensus 28 Ge~~~i~G~nGsGKSTLl~~l~Gl~ 52 (243)
T 1mv5_A 28 NSIIAFAGPSGGGKSTIFSLLERFY 52 (243)
T ss_dssp TEEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCC
Confidence 4488999999999999999999863
No 246
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=97.00 E-value=0.0004 Score=56.76 Aligned_cols=25 Identities=32% Similarity=0.380 Sum_probs=22.4
Q ss_pred CCeEEEEecCCCcHHHHHHHHhhcc
Q 029512 92 LPEIAFAGRSNVGKSSMLNALTRQW 116 (192)
Q Consensus 92 ~~~i~lvG~~n~GKStlin~L~~~~ 116 (192)
+-.++|+|++|+|||||++.|+|-.
T Consensus 37 Ge~~~liG~nGsGKSTLl~~l~Gl~ 61 (266)
T 4g1u_C 37 GEMVAIIGPNGAGKSTLLRLLTGYL 61 (266)
T ss_dssp TCEEEEECCTTSCHHHHHHHHTSSS
T ss_pred CCEEEEECCCCCcHHHHHHHHhcCC
Confidence 4588999999999999999999863
No 247
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=96.99 E-value=0.00042 Score=55.94 Aligned_cols=25 Identities=32% Similarity=0.472 Sum_probs=22.4
Q ss_pred CCeEEEEecCCCcHHHHHHHHhhcc
Q 029512 92 LPEIAFAGRSNVGKSSMLNALTRQW 116 (192)
Q Consensus 92 ~~~i~lvG~~n~GKStlin~L~~~~ 116 (192)
+-.++|+|++|+|||||++.|+|-.
T Consensus 35 Ge~~~i~G~nGsGKSTLl~~l~Gl~ 59 (247)
T 2ff7_A 35 GEVIGIVGRSGSGKSTLTKLIQRFY 59 (247)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCC
Confidence 4488999999999999999999863
No 248
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=96.99 E-value=0.00039 Score=53.76 Aligned_cols=24 Identities=33% Similarity=0.452 Sum_probs=21.8
Q ss_pred CCeEEEEecCCCcHHHHHHHHhhc
Q 029512 92 LPEIAFAGRSNVGKSSMLNALTRQ 115 (192)
Q Consensus 92 ~~~i~lvG~~n~GKStlin~L~~~ 115 (192)
+..|+|+|++|+|||||++.|.+.
T Consensus 6 ~~~i~i~G~~GsGKSTl~~~l~~~ 29 (211)
T 3asz_A 6 PFVIGIAGGTASGKTTLAQALART 29 (211)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHH
T ss_pred cEEEEEECCCCCCHHHHHHHHHHH
Confidence 457999999999999999999985
No 249
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=96.99 E-value=0.0004 Score=57.06 Aligned_cols=24 Identities=25% Similarity=0.326 Sum_probs=21.9
Q ss_pred CCeEEEEecCCCcHHHHHHHHhhc
Q 029512 92 LPEIAFAGRSNVGKSSMLNALTRQ 115 (192)
Q Consensus 92 ~~~i~lvG~~n~GKStlin~L~~~ 115 (192)
+-.++|+|++|+|||||++.|+|-
T Consensus 34 Ge~~~iiGpnGsGKSTLl~~l~Gl 57 (275)
T 3gfo_A 34 GEVTAILGGNGVGKSTLFQNFNGI 57 (275)
T ss_dssp TSEEEEECCTTSSHHHHHHHHTTS
T ss_pred CCEEEEECCCCCCHHHHHHHHHcC
Confidence 448899999999999999999985
No 250
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=96.99 E-value=0.00043 Score=55.18 Aligned_cols=25 Identities=28% Similarity=0.379 Sum_probs=22.4
Q ss_pred CCeEEEEecCCCcHHHHHHHHhhcc
Q 029512 92 LPEIAFAGRSNVGKSSMLNALTRQW 116 (192)
Q Consensus 92 ~~~i~lvG~~n~GKStlin~L~~~~ 116 (192)
+-.++|+|++|+|||||++.|+|-.
T Consensus 34 Ge~~~i~G~nGsGKSTLl~~l~Gl~ 58 (229)
T 2pze_A 34 GQLLAVAGSTGAGKTSLLMMIMGEL 58 (229)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 4589999999999999999999863
No 251
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=96.99 E-value=0.00044 Score=56.20 Aligned_cols=26 Identities=27% Similarity=0.390 Sum_probs=22.9
Q ss_pred CCCeEEEEecCCCcHHHHHHHHhhcc
Q 029512 91 DLPEIAFAGRSNVGKSSMLNALTRQW 116 (192)
Q Consensus 91 ~~~~i~lvG~~n~GKStlin~L~~~~ 116 (192)
.+-.++|+|++|+|||||++.|+|-.
T Consensus 45 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 70 (260)
T 2ghi_A 45 SGTTCALVGHTGSGKSTIAKLLYRFY 70 (260)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhccC
Confidence 34589999999999999999999863
No 252
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=96.99 E-value=0.00047 Score=56.24 Aligned_cols=25 Identities=24% Similarity=0.250 Sum_probs=22.5
Q ss_pred CCCeEEEEecCCCcHHHHHHHHhhc
Q 029512 91 DLPEIAFAGRSNVGKSSMLNALTRQ 115 (192)
Q Consensus 91 ~~~~i~lvG~~n~GKStlin~L~~~ 115 (192)
.+-.++|+|++|+|||||++.|+|-
T Consensus 45 ~Ge~~~l~G~NGsGKSTLlk~l~Gl 69 (267)
T 2zu0_C 45 PGEVHAIMGPNGSGKSTLSATLAGR 69 (267)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHTC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3458999999999999999999995
No 253
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=96.98 E-value=0.00099 Score=49.50 Aligned_cols=51 Identities=22% Similarity=0.148 Sum_probs=34.8
Q ss_pred CCeEEEEecCCCcHHHHHHHHhhccCceeecCCCCceeEEEEE----------eeCCeEEEEECCCCCC
Q 029512 92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFF----------KLGTKLCLVDLPGYGF 150 (192)
Q Consensus 92 ~~~i~lvG~~n~GKStlin~L~~~~~~~~~~~~~g~T~~~~~~----------~~~~~~~lvDtPG~~~ 150 (192)
...++|+|++|+|||||++++.+.. .. . |.. ..+. .....+.++|=|+...
T Consensus 36 g~~~~l~G~~G~GKTtL~~~i~~~~--~~-~---g~~--~~~~~~~~~~~~~~~~~~~lLilDE~~~~~ 96 (149)
T 2kjq_A 36 GQFIYVWGEEGAGKSHLLQAWVAQA--LE-A---GKN--AAYIDAASMPLTDAAFEAEYLAVDQVEKLG 96 (149)
T ss_dssp CSEEEEESSSTTTTCHHHHHHHHHH--HT-T---TCC--EEEEETTTSCCCGGGGGCSEEEEESTTCCC
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHH--Hh-c---CCc--EEEEcHHHhhHHHHHhCCCEEEEeCccccC
Confidence 4589999999999999999999853 11 1 110 0111 1246799999998754
No 254
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=96.98 E-value=0.00046 Score=56.06 Aligned_cols=26 Identities=15% Similarity=0.275 Sum_probs=22.9
Q ss_pred CCCeEEEEecCCCcHHHHHHHHhhcc
Q 029512 91 DLPEIAFAGRSNVGKSSMLNALTRQW 116 (192)
Q Consensus 91 ~~~~i~lvG~~n~GKStlin~L~~~~ 116 (192)
.+-.++|+|++|+|||||++.|+|-.
T Consensus 40 ~Gei~~l~G~NGsGKSTLlk~l~Gl~ 65 (256)
T 1vpl_A 40 EGEIFGLIGPNGAGKTTTLRIISTLI 65 (256)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcCC
Confidence 34589999999999999999999863
No 255
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=96.97 E-value=0.00046 Score=57.67 Aligned_cols=25 Identities=36% Similarity=0.454 Sum_probs=22.5
Q ss_pred CCCeEEEEecCCCcHHHHHHHHhhc
Q 029512 91 DLPEIAFAGRSNVGKSSMLNALTRQ 115 (192)
Q Consensus 91 ~~~~i~lvG~~n~GKStlin~L~~~ 115 (192)
.+-.++|+|++|+|||||++.|.|-
T Consensus 125 ~Ge~vaIvGpsGsGKSTLl~lL~gl 149 (305)
T 2v9p_A 125 KKNCLAFIGPPNTGKSMLCNSLIHF 149 (305)
T ss_dssp TCSEEEEECSSSSSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCcHHHHHHHHhhh
Confidence 4558999999999999999999975
No 256
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=96.97 E-value=0.00042 Score=54.89 Aligned_cols=25 Identities=20% Similarity=0.462 Sum_probs=22.2
Q ss_pred CCeEEEEecCCCcHHHHHHHHhhcc
Q 029512 92 LPEIAFAGRSNVGKSSMLNALTRQW 116 (192)
Q Consensus 92 ~~~i~lvG~~n~GKStlin~L~~~~ 116 (192)
+-.++|+|++|+|||||++.|+|-.
T Consensus 35 Ge~~~iiG~NGsGKSTLlk~l~Gl~ 59 (214)
T 1sgw_A 35 GNVVNFHGPNGIGKTTLLKTISTYL 59 (214)
T ss_dssp TCCEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCC
Confidence 4478999999999999999999863
No 257
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=96.97 E-value=0.00047 Score=56.40 Aligned_cols=26 Identities=23% Similarity=0.277 Sum_probs=22.8
Q ss_pred CCCeEEEEecCCCcHHHHHHHHhhcc
Q 029512 91 DLPEIAFAGRSNVGKSSMLNALTRQW 116 (192)
Q Consensus 91 ~~~~i~lvG~~n~GKStlin~L~~~~ 116 (192)
.+-.++|+|++|+|||||++.|+|-.
T Consensus 44 ~Ge~~~i~G~nGsGKSTLlk~l~Gl~ 69 (271)
T 2ixe_A 44 PGKVTALVGPNGSGKSTVAALLQNLY 69 (271)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 34589999999999999999999863
No 258
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=96.97 E-value=0.00054 Score=52.49 Aligned_cols=25 Identities=24% Similarity=0.236 Sum_probs=22.3
Q ss_pred CCeEEEEecCCCcHHHHHHHHhhcc
Q 029512 92 LPEIAFAGRSNVGKSSMLNALTRQW 116 (192)
Q Consensus 92 ~~~i~lvG~~n~GKStlin~L~~~~ 116 (192)
+..++|+|++|+||||+++.|.+..
T Consensus 6 g~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 6 GLLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp CCEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhh
Confidence 4589999999999999999999863
No 259
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=96.97 E-value=0.00049 Score=55.56 Aligned_cols=24 Identities=25% Similarity=0.255 Sum_probs=22.0
Q ss_pred CCeEEEEecCCCcHHHHHHHHhhc
Q 029512 92 LPEIAFAGRSNVGKSSMLNALTRQ 115 (192)
Q Consensus 92 ~~~i~lvG~~n~GKStlin~L~~~ 115 (192)
+-.++|+|++|+|||||++.|+|-
T Consensus 29 Ge~~~l~G~nGsGKSTLlk~l~Gl 52 (250)
T 2d2e_A 29 GEVHALMGPNGAGKSTLGKILAGD 52 (250)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHTC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 448899999999999999999995
No 260
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=96.96 E-value=0.00047 Score=55.33 Aligned_cols=25 Identities=20% Similarity=0.304 Sum_probs=22.4
Q ss_pred CCeEEEEecCCCcHHHHHHHHhhcc
Q 029512 92 LPEIAFAGRSNVGKSSMLNALTRQW 116 (192)
Q Consensus 92 ~~~i~lvG~~n~GKStlin~L~~~~ 116 (192)
+-.++|+|++|+|||||++.|+|-.
T Consensus 32 Ge~~~l~G~nGsGKSTLl~~l~Gl~ 56 (240)
T 1ji0_A 32 GQIVTLIGANGAGKTTTLSAIAGLV 56 (240)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 4488999999999999999999863
No 261
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=96.94 E-value=0.00047 Score=51.98 Aligned_cols=24 Identities=13% Similarity=0.260 Sum_probs=21.9
Q ss_pred CCeEEEEecCCCcHHHHHHHHhhc
Q 029512 92 LPEIAFAGRSNVGKSSMLNALTRQ 115 (192)
Q Consensus 92 ~~~i~lvG~~n~GKStlin~L~~~ 115 (192)
+-.++|+|++|+|||||++.|+|.
T Consensus 33 Ge~v~L~G~nGaGKTTLlr~l~g~ 56 (158)
T 1htw_A 33 AIMVYLNGDLGAGKTTLTRGMLQG 56 (158)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHh
Confidence 347899999999999999999986
No 262
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=96.93 E-value=0.00053 Score=55.89 Aligned_cols=26 Identities=23% Similarity=0.321 Sum_probs=22.8
Q ss_pred CCCeEEEEecCCCcHHHHHHHHhhcc
Q 029512 91 DLPEIAFAGRSNVGKSSMLNALTRQW 116 (192)
Q Consensus 91 ~~~~i~lvG~~n~GKStlin~L~~~~ 116 (192)
.+-.++|+|++|+|||||++.|+|-.
T Consensus 32 ~Ge~~~liG~nGsGKSTLl~~i~Gl~ 57 (266)
T 2yz2_A 32 EGECLLVAGNTGSGKSTLLQIVAGLI 57 (266)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 34589999999999999999999863
No 263
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=96.93 E-value=0.00051 Score=55.59 Aligned_cols=25 Identities=20% Similarity=0.280 Sum_probs=22.4
Q ss_pred CCeEEEEecCCCcHHHHHHHHhhcc
Q 029512 92 LPEIAFAGRSNVGKSSMLNALTRQW 116 (192)
Q Consensus 92 ~~~i~lvG~~n~GKStlin~L~~~~ 116 (192)
+-.++|+|++|+|||||++.|+|-.
T Consensus 26 Ge~~~liG~NGsGKSTLlk~l~Gl~ 50 (249)
T 2qi9_C 26 GEILHLVGPNGAGKSTLLARMAGMT 50 (249)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCcHHHHHHHHhCCC
Confidence 4488999999999999999999964
No 264
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=96.92 E-value=0.00038 Score=54.82 Aligned_cols=24 Identities=21% Similarity=0.077 Sum_probs=21.6
Q ss_pred CCeEEEEecCCCcHHHHHHHHhhc
Q 029512 92 LPEIAFAGRSNVGKSSMLNALTRQ 115 (192)
Q Consensus 92 ~~~i~lvG~~n~GKStlin~L~~~ 115 (192)
+-.++|+|++|+|||||++.|+|.
T Consensus 22 Ge~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 22 NTIVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp CSEEEEECCTTSSTTHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHhcC
Confidence 347899999999999999999985
No 265
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=96.90 E-value=0.0005 Score=55.96 Aligned_cols=24 Identities=21% Similarity=0.351 Sum_probs=21.6
Q ss_pred CCeEEEEecCCCcHHHHHHHHhhc
Q 029512 92 LPEIAFAGRSNVGKSSMLNALTRQ 115 (192)
Q Consensus 92 ~~~i~lvG~~n~GKStlin~L~~~ 115 (192)
.-.++|+|++|+|||||++.|.+.
T Consensus 25 g~~v~i~Gp~GsGKSTll~~l~g~ 48 (261)
T 2eyu_A 25 MGLILVTGPTGSGKSTTIASMIDY 48 (261)
T ss_dssp SEEEEEECSTTCSHHHHHHHHHHH
T ss_pred CCEEEEECCCCccHHHHHHHHHHh
Confidence 348999999999999999999974
No 266
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=96.90 E-value=0.00055 Score=56.33 Aligned_cols=25 Identities=24% Similarity=0.263 Sum_probs=22.4
Q ss_pred CCeEEEEecCCCcHHHHHHHHhhcc
Q 029512 92 LPEIAFAGRSNVGKSSMLNALTRQW 116 (192)
Q Consensus 92 ~~~i~lvG~~n~GKStlin~L~~~~ 116 (192)
+-.++|+|++|+|||||++.|+|-.
T Consensus 47 Ge~~~liG~NGsGKSTLlk~l~Gl~ 71 (279)
T 2ihy_A 47 GDKWILYGLNGAGKTTLLNILNAYE 71 (279)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCcHHHHHHHHhCCC
Confidence 4488999999999999999999863
No 267
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=96.89 E-value=0.00039 Score=58.07 Aligned_cols=26 Identities=35% Similarity=0.480 Sum_probs=23.0
Q ss_pred CCCeEEEEecCCCcHHHHHHHHhhcc
Q 029512 91 DLPEIAFAGRSNVGKSSMLNALTRQW 116 (192)
Q Consensus 91 ~~~~i~lvG~~n~GKStlin~L~~~~ 116 (192)
.+-.++|+|++|+|||||++.|+|-.
T Consensus 79 ~Ge~vaivG~sGsGKSTLl~ll~gl~ 104 (306)
T 3nh6_A 79 PGQTLALVGPSGAGKSTILRLLFRFY 104 (306)
T ss_dssp TTCEEEEESSSCHHHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCchHHHHHHHHHcCC
Confidence 45589999999999999999999853
No 268
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=96.87 E-value=0.0006 Score=55.23 Aligned_cols=25 Identities=28% Similarity=0.348 Sum_probs=22.4
Q ss_pred CCeEEEEecCCCcHHHHHHHHhhcc
Q 029512 92 LPEIAFAGRSNVGKSSMLNALTRQW 116 (192)
Q Consensus 92 ~~~i~lvG~~n~GKStlin~L~~~~ 116 (192)
+-.++|+|++|+|||||++.|+|-.
T Consensus 31 Ge~~~l~G~nGsGKSTLl~~l~Gl~ 55 (253)
T 2nq2_C 31 GDILAVLGQNGCGKSTLLDLLLGIH 55 (253)
T ss_dssp TCEEEEECCSSSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 4488999999999999999999863
No 269
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=96.85 E-value=0.00054 Score=51.78 Aligned_cols=21 Identities=29% Similarity=0.420 Sum_probs=18.1
Q ss_pred CCeEEEEecCCCcHHHHHHHH
Q 029512 92 LPEIAFAGRSNVGKSSMLNAL 112 (192)
Q Consensus 92 ~~~i~lvG~~n~GKStlin~L 112 (192)
+-.++++|++|+|||||++.+
T Consensus 9 gei~~l~G~nGsGKSTl~~~~ 29 (171)
T 4gp7_A 9 LSLVVLIGSSGSGKSTFAKKH 29 (171)
T ss_dssp SEEEEEECCTTSCHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHH
Confidence 347899999999999999943
No 270
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=96.84 E-value=0.00074 Score=52.07 Aligned_cols=25 Identities=16% Similarity=0.347 Sum_probs=22.2
Q ss_pred CCCeEEEEecCCCcHHHHHHHHhhc
Q 029512 91 DLPEIAFAGRSNVGKSSMLNALTRQ 115 (192)
Q Consensus 91 ~~~~i~lvG~~n~GKStlin~L~~~ 115 (192)
.+..++|+|++|+||||+++.|.+.
T Consensus 28 ~g~~i~l~G~~GsGKSTl~~~L~~~ 52 (200)
T 4eun_A 28 PTRHVVVMGVSGSGKTTIAHGVADE 52 (200)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHh
Confidence 3568999999999999999999874
No 271
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=96.83 E-value=0.00036 Score=53.33 Aligned_cols=24 Identities=17% Similarity=0.374 Sum_probs=21.7
Q ss_pred CeEEEEecCCCcHHHHHHHHhhcc
Q 029512 93 PEIAFAGRSNVGKSSMLNALTRQW 116 (192)
Q Consensus 93 ~~i~lvG~~n~GKStlin~L~~~~ 116 (192)
..++|+|++|+|||||++.|.+..
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~ 26 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPIL 26 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 478999999999999999999863
No 272
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=96.81 E-value=0.00077 Score=55.77 Aligned_cols=26 Identities=27% Similarity=0.360 Sum_probs=23.0
Q ss_pred CCCeEEEEecCCCcHHHHHHHHhhcc
Q 029512 91 DLPEIAFAGRSNVGKSSMLNALTRQW 116 (192)
Q Consensus 91 ~~~~i~lvG~~n~GKStlin~L~~~~ 116 (192)
.+-.++|+|++|+|||||++.|+|-.
T Consensus 63 ~Ge~~~i~G~NGsGKSTLlk~l~Gl~ 88 (290)
T 2bbs_A 63 RGQLLAVAGSTGAGKTSLLMMIMGEL 88 (290)
T ss_dssp TTCEEEEEESTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhcCC
Confidence 45589999999999999999999863
No 273
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=96.80 E-value=0.00076 Score=52.19 Aligned_cols=25 Identities=24% Similarity=0.594 Sum_probs=22.2
Q ss_pred CCCeEEEEecCCCcHHHHHHHHhhc
Q 029512 91 DLPEIAFAGRSNVGKSSMLNALTRQ 115 (192)
Q Consensus 91 ~~~~i~lvG~~n~GKStlin~L~~~ 115 (192)
....|+|+|++|+||||+.+.|...
T Consensus 11 ~~~~i~l~G~sGsGKsTl~~~L~~~ 35 (204)
T 2qor_A 11 RIPPLVVCGPSGVGKGTLIKKVLSE 35 (204)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHHH
T ss_pred cCCEEEEECCCCCCHHHHHHHHHHh
Confidence 4568999999999999999999875
No 274
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=96.80 E-value=0.0005 Score=54.19 Aligned_cols=25 Identities=24% Similarity=0.282 Sum_probs=17.0
Q ss_pred CCCeEEEEecCCCcHHHHHHHHh-hc
Q 029512 91 DLPEIAFAGRSNVGKSSMLNALT-RQ 115 (192)
Q Consensus 91 ~~~~i~lvG~~n~GKStlin~L~-~~ 115 (192)
.+..++|+|++|+|||||++.|. +.
T Consensus 26 ~G~ii~l~Gp~GsGKSTl~~~L~~~~ 51 (231)
T 3lnc_A 26 VGVILVLSSPSGCGKTTVANKLLEKQ 51 (231)
T ss_dssp CCCEEEEECSCC----CHHHHHHC--
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhcC
Confidence 34589999999999999999999 75
No 275
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=96.79 E-value=0.00073 Score=51.37 Aligned_cols=22 Identities=32% Similarity=0.398 Sum_probs=20.1
Q ss_pred eEEEEecCCCcHHHHHHHHhhc
Q 029512 94 EIAFAGRSNVGKSSMLNALTRQ 115 (192)
Q Consensus 94 ~i~lvG~~n~GKStlin~L~~~ 115 (192)
.++|+|++|+|||||++.|.+.
T Consensus 4 ii~l~G~~GaGKSTl~~~L~~~ 25 (189)
T 2bdt_A 4 LYIITGPAGVGKSTTCKRLAAQ 25 (189)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHhcc
Confidence 5789999999999999999864
No 276
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=96.79 E-value=0.00076 Score=50.32 Aligned_cols=23 Identities=30% Similarity=0.423 Sum_probs=21.2
Q ss_pred CeEEEEecCCCcHHHHHHHHhhc
Q 029512 93 PEIAFAGRSNVGKSSMLNALTRQ 115 (192)
Q Consensus 93 ~~i~lvG~~n~GKStlin~L~~~ 115 (192)
..|+|+|++|+||||+.+.|.+.
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La~~ 27 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLAQQ 27 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 47999999999999999999975
No 277
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=96.78 E-value=0.00085 Score=51.42 Aligned_cols=24 Identities=38% Similarity=0.639 Sum_probs=22.0
Q ss_pred CCeEEEEecCCCcHHHHHHHHhhc
Q 029512 92 LPEIAFAGRSNVGKSSMLNALTRQ 115 (192)
Q Consensus 92 ~~~i~lvG~~n~GKStlin~L~~~ 115 (192)
.+.++++|++|+|||||++.|.+.
T Consensus 6 ~~~i~i~G~sGsGKTTl~~~l~~~ 29 (174)
T 1np6_A 6 IPLLAFAAWSGTGKTTLLKKLIPA 29 (174)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHH
T ss_pred ceEEEEEeCCCCCHHHHHHHHHHh
Confidence 568999999999999999999974
No 278
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=96.77 E-value=0.00076 Score=52.27 Aligned_cols=22 Identities=18% Similarity=0.487 Sum_probs=20.5
Q ss_pred eEEEEecCCCcHHHHHHHHhhc
Q 029512 94 EIAFAGRSNVGKSSMLNALTRQ 115 (192)
Q Consensus 94 ~i~lvG~~n~GKStlin~L~~~ 115 (192)
.++++|++|+|||||++.|++.
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g~ 24 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASEV 24 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHHhh
Confidence 6899999999999999999975
No 279
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=96.77 E-value=0.00069 Score=55.25 Aligned_cols=24 Identities=21% Similarity=0.396 Sum_probs=22.0
Q ss_pred CCeEEEEecCCCcHHHHHHHHhhc
Q 029512 92 LPEIAFAGRSNVGKSSMLNALTRQ 115 (192)
Q Consensus 92 ~~~i~lvG~~n~GKStlin~L~~~ 115 (192)
+-.++|+|++|+|||||++.|+|-
T Consensus 30 Ge~~~i~G~NGsGKSTLlk~l~Gl 53 (263)
T 2pjz_A 30 GEKVIILGPNGSGKTTLLRAISGL 53 (263)
T ss_dssp SSEEEEECCTTSSHHHHHHHHTTS
T ss_pred CEEEEEECCCCCCHHHHHHHHhCC
Confidence 448899999999999999999986
No 280
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=96.75 E-value=0.00093 Score=50.05 Aligned_cols=24 Identities=25% Similarity=0.297 Sum_probs=21.3
Q ss_pred CCeEEEEecCCCcHHHHHHHHhhc
Q 029512 92 LPEIAFAGRSNVGKSSMLNALTRQ 115 (192)
Q Consensus 92 ~~~i~lvG~~n~GKStlin~L~~~ 115 (192)
+..++|+|++|+||||+.+.|.+.
T Consensus 8 g~~i~l~G~~GsGKSTl~~~l~~~ 31 (175)
T 1knq_A 8 HHIYVLMGVSGSGKSAVASEVAHQ 31 (175)
T ss_dssp SEEEEEECSTTSCHHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHh
Confidence 458999999999999999999864
No 281
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=96.72 E-value=0.00099 Score=57.01 Aligned_cols=26 Identities=19% Similarity=0.185 Sum_probs=22.8
Q ss_pred CCCeEEEEecCCCcHHHHHHHHhhcc
Q 029512 91 DLPEIAFAGRSNVGKSSMLNALTRQW 116 (192)
Q Consensus 91 ~~~~i~lvG~~n~GKStlin~L~~~~ 116 (192)
.+-.++|+|++|+|||||++.|.|-.
T Consensus 53 ~Gei~~IiGpnGaGKSTLlr~i~GL~ 78 (366)
T 3tui_C 53 AGQIYGVIGASGAGKSTLIRCVNLLE 78 (366)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCCEEEEEcCCCchHHHHHHHHhcCC
Confidence 34588999999999999999999863
No 282
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=96.71 E-value=0.001 Score=56.71 Aligned_cols=25 Identities=24% Similarity=0.252 Sum_probs=22.3
Q ss_pred CCeEEEEecCCCcHHHHHHHHhhcc
Q 029512 92 LPEIAFAGRSNVGKSSMLNALTRQW 116 (192)
Q Consensus 92 ~~~i~lvG~~n~GKStlin~L~~~~ 116 (192)
+-.++|+|++|+|||||++.|.|-.
T Consensus 30 Ge~~~llGpsGsGKSTLLr~iaGl~ 54 (359)
T 3fvq_A 30 GEILFIIGASGCGKTTLLRCLAGFE 54 (359)
T ss_dssp TCEEEEEESTTSSHHHHHHHHHTSS
T ss_pred CCEEEEECCCCchHHHHHHHHhcCC
Confidence 4488999999999999999999863
No 283
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=96.71 E-value=0.0011 Score=55.17 Aligned_cols=25 Identities=24% Similarity=0.333 Sum_probs=22.1
Q ss_pred CCCeEEEEecCCCcHHHHHHHHhhc
Q 029512 91 DLPEIAFAGRSNVGKSSMLNALTRQ 115 (192)
Q Consensus 91 ~~~~i~lvG~~n~GKStlin~L~~~ 115 (192)
.+-.++++|++|+|||||++.|.+.
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagl 125 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRY 125 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHH
Confidence 3458999999999999999999964
No 284
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=96.70 E-value=0.00096 Score=51.81 Aligned_cols=23 Identities=17% Similarity=0.209 Sum_probs=21.0
Q ss_pred CCeEEEEecCCCcHHHHHHHHhh
Q 029512 92 LPEIAFAGRSNVGKSSMLNALTR 114 (192)
Q Consensus 92 ~~~i~lvG~~n~GKStlin~L~~ 114 (192)
+-.++|+|++|+|||||++.|++
T Consensus 25 G~~~~l~G~nGsGKSTll~~l~g 47 (231)
T 4a74_A 25 QAITEVFGEFGSGKTQLAHTLAV 47 (231)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 34889999999999999999987
No 285
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=96.69 E-value=0.00096 Score=51.42 Aligned_cols=24 Identities=33% Similarity=0.257 Sum_probs=21.9
Q ss_pred CCeEEEEecCCCcHHHHHHHHhhc
Q 029512 92 LPEIAFAGRSNVGKSSMLNALTRQ 115 (192)
Q Consensus 92 ~~~i~lvG~~n~GKStlin~L~~~ 115 (192)
+..|+|+|++|+||||+.+.|.+.
T Consensus 25 g~~i~l~G~sGsGKSTl~~~La~~ 48 (200)
T 3uie_A 25 GCVIWVTGLSGSGKSTLACALNQM 48 (200)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 458999999999999999999975
No 286
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=96.69 E-value=0.00094 Score=56.77 Aligned_cols=25 Identities=28% Similarity=0.472 Sum_probs=22.3
Q ss_pred CCeEEEEecCCCcHHHHHHHHhhcc
Q 029512 92 LPEIAFAGRSNVGKSSMLNALTRQW 116 (192)
Q Consensus 92 ~~~i~lvG~~n~GKStlin~L~~~~ 116 (192)
+-.++|+|++|+|||||+|+|++..
T Consensus 175 G~~i~ivG~sGsGKSTll~~l~~~~ 199 (361)
T 2gza_A 175 ERVIVVAGETGSGKTTLMKALMQEI 199 (361)
T ss_dssp TCCEEEEESSSSCHHHHHHHHHTTS
T ss_pred CCEEEEECCCCCCHHHHHHHHHhcC
Confidence 3489999999999999999999864
No 287
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=96.68 E-value=0.00092 Score=55.81 Aligned_cols=26 Identities=35% Similarity=0.326 Sum_probs=22.9
Q ss_pred CCCCeEEEEecCCCcHHHHHHHHhhc
Q 029512 90 PDLPEIAFAGRSNVGKSSMLNALTRQ 115 (192)
Q Consensus 90 ~~~~~i~lvG~~n~GKStlin~L~~~ 115 (192)
..+..|+|+|++|+|||||++.|.+.
T Consensus 88 ~~g~ivgI~G~sGsGKSTL~~~L~gl 113 (312)
T 3aez_A 88 PVPFIIGVAGSVAVGKSTTARVLQAL 113 (312)
T ss_dssp CCCEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCchHHHHHHHHHhh
Confidence 34568999999999999999999985
No 288
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=96.65 E-value=0.0012 Score=52.57 Aligned_cols=22 Identities=18% Similarity=0.335 Sum_probs=20.5
Q ss_pred CCeEEEEecCCCcHHHHHHHHh
Q 029512 92 LPEIAFAGRSNVGKSSMLNALT 113 (192)
Q Consensus 92 ~~~i~lvG~~n~GKStlin~L~ 113 (192)
...|+|+|++|+|||||++.|.
T Consensus 27 ~~~i~l~G~~GsGKSTl~k~La 48 (246)
T 2bbw_A 27 LLRAVILGPPGSGKGTVCQRIA 48 (246)
T ss_dssp CCEEEEECCTTSSHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHH
Confidence 3589999999999999999999
No 289
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=96.64 E-value=0.0012 Score=56.29 Aligned_cols=25 Identities=28% Similarity=0.323 Sum_probs=22.3
Q ss_pred CCeEEEEecCCCcHHHHHHHHhhcc
Q 029512 92 LPEIAFAGRSNVGKSSMLNALTRQW 116 (192)
Q Consensus 92 ~~~i~lvG~~n~GKStlin~L~~~~ 116 (192)
+-.++|+|++|+|||||++.|+|-.
T Consensus 29 Ge~~~llGpnGsGKSTLLr~iaGl~ 53 (359)
T 2yyz_A 29 GEFVALLGPSGCGKTTTLLMLAGIY 53 (359)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHTSS
T ss_pred CCEEEEEcCCCchHHHHHHHHHCCC
Confidence 4488999999999999999999863
No 290
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=96.63 E-value=0.0012 Score=56.28 Aligned_cols=25 Identities=28% Similarity=0.379 Sum_probs=22.4
Q ss_pred CCeEEEEecCCCcHHHHHHHHhhcc
Q 029512 92 LPEIAFAGRSNVGKSSMLNALTRQW 116 (192)
Q Consensus 92 ~~~i~lvG~~n~GKStlin~L~~~~ 116 (192)
+-.++|+|++|+|||||++.|+|-.
T Consensus 29 Ge~~~llGpnGsGKSTLLr~iaGl~ 53 (362)
T 2it1_A 29 GEFMALLGPSGSGKSTLLYTIAGIY 53 (362)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCEEEEECCCCchHHHHHHHHhcCC
Confidence 4488999999999999999999863
No 291
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=96.62 E-value=0.0013 Score=56.64 Aligned_cols=25 Identities=28% Similarity=0.351 Sum_probs=22.3
Q ss_pred CCeEEEEecCCCcHHHHHHHHhhcc
Q 029512 92 LPEIAFAGRSNVGKSSMLNALTRQW 116 (192)
Q Consensus 92 ~~~i~lvG~~n~GKStlin~L~~~~ 116 (192)
+-.++|+|++|+|||||++.|+|-.
T Consensus 29 Ge~~~llGpsGsGKSTLLr~iaGl~ 53 (381)
T 3rlf_A 29 GEFVVFVGPSGCGKSTLLRMIAGLE 53 (381)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCEEEEEcCCCchHHHHHHHHHcCC
Confidence 4488999999999999999999863
No 292
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=96.62 E-value=0.0023 Score=53.16 Aligned_cols=25 Identities=24% Similarity=0.344 Sum_probs=22.0
Q ss_pred CCCeEEEEecCCCcHHHHHHHHhhc
Q 029512 91 DLPEIAFAGRSNVGKSSMLNALTRQ 115 (192)
Q Consensus 91 ~~~~i~lvG~~n~GKStlin~L~~~ 115 (192)
.+-.++++|++|+||||+++.|++.
T Consensus 99 ~g~vi~lvG~nGsGKTTll~~Lag~ 123 (302)
T 3b9q_A 99 KPAVIMIVGVNGGGKTTSLGKLAHR 123 (302)
T ss_dssp SCEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHH
Confidence 3458899999999999999999974
No 293
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=96.60 E-value=0.0013 Score=56.07 Aligned_cols=25 Identities=20% Similarity=0.264 Sum_probs=22.3
Q ss_pred CCeEEEEecCCCcHHHHHHHHhhcc
Q 029512 92 LPEIAFAGRSNVGKSSMLNALTRQW 116 (192)
Q Consensus 92 ~~~i~lvG~~n~GKStlin~L~~~~ 116 (192)
+-.++|+|++|+|||||++.|+|-.
T Consensus 41 Ge~~~llGpnGsGKSTLLr~iaGl~ 65 (355)
T 1z47_A 41 GEMVGLLGPSGSGKTTILRLIAGLE 65 (355)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHTSS
T ss_pred CCEEEEECCCCCcHHHHHHHHhCCC
Confidence 4488999999999999999999863
No 294
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=96.59 E-value=0.001 Score=55.88 Aligned_cols=24 Identities=13% Similarity=0.351 Sum_probs=21.8
Q ss_pred CeEEEEecCCCcHHHHHHHHhhcc
Q 029512 93 PEIAFAGRSNVGKSSMLNALTRQW 116 (192)
Q Consensus 93 ~~i~lvG~~n~GKStlin~L~~~~ 116 (192)
-.++++|++|+|||||+|+|.+..
T Consensus 172 ~~v~i~G~~GsGKTTll~~l~g~~ 195 (330)
T 2pt7_A 172 KNVIVCGGTGSGKTTYIKSIMEFI 195 (330)
T ss_dssp CCEEEEESTTSCHHHHHHHGGGGS
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 378999999999999999999863
No 295
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=96.57 E-value=0.0014 Score=56.10 Aligned_cols=25 Identities=20% Similarity=0.209 Sum_probs=22.3
Q ss_pred CCeEEEEecCCCcHHHHHHHHhhcc
Q 029512 92 LPEIAFAGRSNVGKSSMLNALTRQW 116 (192)
Q Consensus 92 ~~~i~lvG~~n~GKStlin~L~~~~ 116 (192)
+-.++|+|++|+|||||++.|+|-.
T Consensus 37 Ge~~~llGpnGsGKSTLLr~iaGl~ 61 (372)
T 1v43_A 37 GEFLVLLGPSGCGKTTTLRMIAGLE 61 (372)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCEEEEECCCCChHHHHHHHHHcCC
Confidence 4488999999999999999999863
No 296
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=96.56 E-value=0.0014 Score=50.99 Aligned_cols=23 Identities=30% Similarity=0.569 Sum_probs=21.1
Q ss_pred CeEEEEecCCCcHHHHHHHHhhc
Q 029512 93 PEIAFAGRSNVGKSSMLNALTRQ 115 (192)
Q Consensus 93 ~~i~lvG~~n~GKStlin~L~~~ 115 (192)
..|+|+|++|+||||+.+.|.+.
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~~ 28 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAEA 28 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 58999999999999999999874
No 297
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=96.56 E-value=0.0013 Score=52.43 Aligned_cols=24 Identities=21% Similarity=0.248 Sum_probs=21.7
Q ss_pred CCeEEEEecCCCcHHHHHHHHhhc
Q 029512 92 LPEIAFAGRSNVGKSSMLNALTRQ 115 (192)
Q Consensus 92 ~~~i~lvG~~n~GKStlin~L~~~ 115 (192)
+..|+|+|++|+|||||++.|.+.
T Consensus 25 g~iigI~G~~GsGKSTl~k~L~~~ 48 (245)
T 2jeo_A 25 PFLIGVSGGTASGKSTVCEKIMEL 48 (245)
T ss_dssp SEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHHH
Confidence 458999999999999999999885
No 298
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=96.55 E-value=0.001 Score=56.24 Aligned_cols=25 Identities=28% Similarity=0.457 Sum_probs=22.5
Q ss_pred CCeEEEEecCCCcHHHHHHHHhhcc
Q 029512 92 LPEIAFAGRSNVGKSSMLNALTRQW 116 (192)
Q Consensus 92 ~~~i~lvG~~n~GKStlin~L~~~~ 116 (192)
.-+++|+|++|+|||||++.|.|..
T Consensus 170 g~k~~IvG~nGsGKSTLlk~L~gl~ 194 (365)
T 1lw7_A 170 AKTVAILGGESSGKSVLVNKLAAVF 194 (365)
T ss_dssp CEEEEEECCTTSHHHHHHHHHHHHT
T ss_pred hCeEEEECCCCCCHHHHHHHHHHHh
Confidence 4589999999999999999999864
No 299
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=96.55 E-value=0.0014 Score=56.04 Aligned_cols=25 Identities=20% Similarity=0.193 Sum_probs=22.3
Q ss_pred CCeEEEEecCCCcHHHHHHHHhhcc
Q 029512 92 LPEIAFAGRSNVGKSSMLNALTRQW 116 (192)
Q Consensus 92 ~~~i~lvG~~n~GKStlin~L~~~~ 116 (192)
+-.++|+|++|+|||||++.|+|-.
T Consensus 29 Ge~~~llGpnGsGKSTLLr~iaGl~ 53 (372)
T 1g29_1 29 GEFMILLGPSGCGKTTTLRMIAGLE 53 (372)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHTSS
T ss_pred CCEEEEECCCCcHHHHHHHHHHcCC
Confidence 4478999999999999999999863
No 300
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=96.54 E-value=0.0012 Score=56.10 Aligned_cols=22 Identities=27% Similarity=0.379 Sum_probs=20.6
Q ss_pred eEEEEecCCCcHHHHHHHHhhc
Q 029512 94 EIAFAGRSNVGKSSMLNALTRQ 115 (192)
Q Consensus 94 ~i~lvG~~n~GKStlin~L~~~ 115 (192)
.++++|++|+|||||+++|++.
T Consensus 125 ~i~I~GptGSGKTTlL~~l~g~ 146 (356)
T 3jvv_A 125 LVLVTGPTGSGKSTTLAAMLDY 146 (356)
T ss_dssp EEEEECSTTSCHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHhc
Confidence 8999999999999999999874
No 301
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=96.54 E-value=0.0015 Score=48.33 Aligned_cols=23 Identities=22% Similarity=0.265 Sum_probs=20.7
Q ss_pred CeEEEEecCCCcHHHHHHHHhhc
Q 029512 93 PEIAFAGRSNVGKSSMLNALTRQ 115 (192)
Q Consensus 93 ~~i~lvG~~n~GKStlin~L~~~ 115 (192)
..|+|+|.+|+||||+.+.|...
T Consensus 2 ~~i~l~G~~GsGKsT~~~~L~~~ 24 (173)
T 3kb2_A 2 TLIILEGPDCCFKSTVAAKLSKE 24 (173)
T ss_dssp CEEEEECSSSSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 37899999999999999999865
No 302
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=96.52 E-value=0.0016 Score=51.11 Aligned_cols=22 Identities=14% Similarity=0.330 Sum_probs=20.1
Q ss_pred CCeEEEEecCCCcHHHHHHHHh
Q 029512 92 LPEIAFAGRSNVGKSSMLNALT 113 (192)
Q Consensus 92 ~~~i~lvG~~n~GKStlin~L~ 113 (192)
+-.++|+|++|+|||||++.|+
T Consensus 30 G~~~~l~GpnGsGKSTLl~~i~ 51 (251)
T 2ehv_A 30 GTTVLLTGGTGTGKTTFAAQFI 51 (251)
T ss_dssp TCEEEEECCTTSSHHHHHHHHH
T ss_pred CcEEEEEeCCCCCHHHHHHHHH
Confidence 4588999999999999999888
No 303
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=96.52 E-value=0.0014 Score=49.37 Aligned_cols=24 Identities=25% Similarity=0.391 Sum_probs=21.7
Q ss_pred CCeEEEEecCCCcHHHHHHHHhhc
Q 029512 92 LPEIAFAGRSNVGKSSMLNALTRQ 115 (192)
Q Consensus 92 ~~~i~lvG~~n~GKStlin~L~~~ 115 (192)
...++|+|++|+|||||++++.+.
T Consensus 38 g~~~~l~G~~G~GKTtL~~~i~~~ 61 (180)
T 3ec2_A 38 GKGLTFVGSPGVGKTHLAVATLKA 61 (180)
T ss_dssp CCEEEECCSSSSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHH
Confidence 458999999999999999999875
No 304
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=96.51 E-value=0.0017 Score=55.97 Aligned_cols=26 Identities=31% Similarity=0.493 Sum_probs=22.8
Q ss_pred CCCeEEEEecCCCcHHHHHHHHhhcc
Q 029512 91 DLPEIAFAGRSNVGKSSMLNALTRQW 116 (192)
Q Consensus 91 ~~~~i~lvG~~n~GKStlin~L~~~~ 116 (192)
.+-.++|+|++|+|||||++.|+|-.
T Consensus 46 ~Ge~~~llGpsGsGKSTLLr~iaGl~ 71 (390)
T 3gd7_A 46 PGQRVGLLGRTGSGKSTLLSAFLRLL 71 (390)
T ss_dssp TTCEEEEEESTTSSHHHHHHHHHTCS
T ss_pred CCCEEEEECCCCChHHHHHHHHhCCC
Confidence 34589999999999999999999863
No 305
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=96.51 E-value=0.0012 Score=56.18 Aligned_cols=25 Identities=16% Similarity=0.195 Sum_probs=22.3
Q ss_pred CCeEEEEecCCCcHHHHHHHHhhcc
Q 029512 92 LPEIAFAGRSNVGKSSMLNALTRQW 116 (192)
Q Consensus 92 ~~~i~lvG~~n~GKStlin~L~~~~ 116 (192)
+-.++|+|++|+|||||++.|+|-.
T Consensus 26 Ge~~~llGpnGsGKSTLLr~iaGl~ 50 (348)
T 3d31_A 26 GEYFVILGPTGAGKTLFLELIAGFH 50 (348)
T ss_dssp TCEEEEECCCTHHHHHHHHHHHTSS
T ss_pred CCEEEEECCCCccHHHHHHHHHcCC
Confidence 4488999999999999999999863
No 306
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=96.50 E-value=0.0018 Score=49.72 Aligned_cols=22 Identities=23% Similarity=0.433 Sum_probs=20.4
Q ss_pred CeEEEEecCCCcHHHHHHHHhh
Q 029512 93 PEIAFAGRSNVGKSSMLNALTR 114 (192)
Q Consensus 93 ~~i~lvG~~n~GKStlin~L~~ 114 (192)
..|+|+|.+|+||||+.+.|.+
T Consensus 2 ~~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 2 KRIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHH
Confidence 4799999999999999999987
No 307
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=96.48 E-value=0.0016 Score=57.31 Aligned_cols=25 Identities=28% Similarity=0.478 Sum_probs=22.8
Q ss_pred CCCeEEEEecCCCcHHHHHHHHhhc
Q 029512 91 DLPEIAFAGRSNVGKSSMLNALTRQ 115 (192)
Q Consensus 91 ~~~~i~lvG~~n~GKStlin~L~~~ 115 (192)
.+..++|+|++|+|||||++.|+|.
T Consensus 137 ~Ge~v~IvGpnGsGKSTLlr~L~Gl 161 (460)
T 2npi_A 137 EGPRVVIVGGSQTGKTSLSRTLCSY 161 (460)
T ss_dssp SCCCEEEEESTTSSHHHHHHHHHHT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCc
Confidence 4668999999999999999999985
No 308
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=96.45 E-value=0.0015 Score=55.80 Aligned_cols=24 Identities=21% Similarity=0.351 Sum_probs=21.5
Q ss_pred CCeEEEEecCCCcHHHHHHHHhhc
Q 029512 92 LPEIAFAGRSNVGKSSMLNALTRQ 115 (192)
Q Consensus 92 ~~~i~lvG~~n~GKStlin~L~~~ 115 (192)
.-.++++|++|+|||||+++|++.
T Consensus 136 g~~i~ivG~~GsGKTTll~~l~~~ 159 (372)
T 2ewv_A 136 MGLILVTGPTGSGKSTTIASMIDY 159 (372)
T ss_dssp SEEEEEECSSSSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHhh
Confidence 347999999999999999999974
No 309
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=96.45 E-value=0.002 Score=49.50 Aligned_cols=24 Identities=25% Similarity=0.456 Sum_probs=21.6
Q ss_pred CCeEEEEecCCCcHHHHHHHHhhc
Q 029512 92 LPEIAFAGRSNVGKSSMLNALTRQ 115 (192)
Q Consensus 92 ~~~i~lvG~~n~GKStlin~L~~~ 115 (192)
+..|+|+|.+|+||||+.+.|.+.
T Consensus 25 ~~~i~l~G~~GsGKsTl~~~La~~ 48 (199)
T 3vaa_A 25 MVRIFLTGYMGAGKTTLGKAFARK 48 (199)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHH
Confidence 458999999999999999999864
No 310
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=96.43 E-value=0.0011 Score=56.48 Aligned_cols=25 Identities=16% Similarity=0.235 Sum_probs=22.3
Q ss_pred CCeEEEEecCCCcHHHHHHHHhhcc
Q 029512 92 LPEIAFAGRSNVGKSSMLNALTRQW 116 (192)
Q Consensus 92 ~~~i~lvG~~n~GKStlin~L~~~~ 116 (192)
+-.++|+|++|+|||||++.|+|-.
T Consensus 31 Ge~~~llGpnGsGKSTLLr~iaGl~ 55 (353)
T 1oxx_K 31 GERFGILGPSGAGKTTFMRIIAGLD 55 (353)
T ss_dssp TCEEEEECSCHHHHHHHHHHHHTSS
T ss_pred CCEEEEECCCCCcHHHHHHHHhCCC
Confidence 4488999999999999999999863
No 311
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=96.42 E-value=0.0021 Score=51.59 Aligned_cols=23 Identities=35% Similarity=0.498 Sum_probs=21.1
Q ss_pred CCCeEEEEecCCCcHHHHHHHHh
Q 029512 91 DLPEIAFAGRSNVGKSSMLNALT 113 (192)
Q Consensus 91 ~~~~i~lvG~~n~GKStlin~L~ 113 (192)
.+..|+|+|++|+||||+.+.|.
T Consensus 26 ~g~~I~I~G~~GsGKSTl~k~La 48 (252)
T 4e22_A 26 IAPVITVDGPSGAGKGTLCKALA 48 (252)
T ss_dssp TSCEEEEECCTTSSHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHH
Confidence 34689999999999999999999
No 312
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=96.42 E-value=0.0019 Score=53.49 Aligned_cols=25 Identities=32% Similarity=0.255 Sum_probs=22.3
Q ss_pred CCCeEEEEecCCCcHHHHHHHHhhc
Q 029512 91 DLPEIAFAGRSNVGKSSMLNALTRQ 115 (192)
Q Consensus 91 ~~~~i~lvG~~n~GKStlin~L~~~ 115 (192)
.+..|+|+|++|+|||||++.|.+.
T Consensus 79 ~g~iigI~G~~GsGKSTl~~~L~~~ 103 (308)
T 1sq5_A 79 IPYIISIAGSVAVGKSTTARVLQAL 103 (308)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHH
Confidence 3458999999999999999999984
No 313
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=96.41 E-value=0.0035 Score=55.74 Aligned_cols=25 Identities=32% Similarity=0.434 Sum_probs=22.0
Q ss_pred CCCeEEEEecCCCcHHHHHHHHhhc
Q 029512 91 DLPEIAFAGRSNVGKSSMLNALTRQ 115 (192)
Q Consensus 91 ~~~~i~lvG~~n~GKStlin~L~~~ 115 (192)
.+-.++|+|.+|+|||||++.|.+.
T Consensus 292 ~GeVI~LVGpNGSGKTTLl~~LAgl 316 (503)
T 2yhs_A 292 APFVILMVGVNGVGKTTTIGKLARQ 316 (503)
T ss_dssp TTEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCcccHHHHHHHHHHH
Confidence 3458999999999999999999974
No 314
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=96.40 E-value=0.0036 Score=53.35 Aligned_cols=25 Identities=24% Similarity=0.344 Sum_probs=22.0
Q ss_pred CCCeEEEEecCCCcHHHHHHHHhhc
Q 029512 91 DLPEIAFAGRSNVGKSSMLNALTRQ 115 (192)
Q Consensus 91 ~~~~i~lvG~~n~GKStlin~L~~~ 115 (192)
.+-.++++|++|+|||||++.|++.
T Consensus 156 ~g~vi~lvG~nGsGKTTll~~Lag~ 180 (359)
T 2og2_A 156 KPAVIMIVGVNGGGKTTSLGKLAHR 180 (359)
T ss_dssp SSEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCChHHHHHHHHHhh
Confidence 3448899999999999999999974
No 315
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=96.40 E-value=0.0019 Score=54.39 Aligned_cols=25 Identities=24% Similarity=0.319 Sum_probs=22.2
Q ss_pred CCCeEEEEecCCCcHHHHHHHHhhc
Q 029512 91 DLPEIAFAGRSNVGKSSMLNALTRQ 115 (192)
Q Consensus 91 ~~~~i~lvG~~n~GKStlin~L~~~ 115 (192)
.+-.++++|++|+||||+++.|.+.
T Consensus 128 ~g~vi~lvG~nGaGKTTll~~Lag~ 152 (328)
T 3e70_C 128 KPYVIMFVGFNGSGKTTTIAKLANW 152 (328)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 3458999999999999999999974
No 316
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=96.39 E-value=0.002 Score=47.40 Aligned_cols=20 Identities=30% Similarity=0.381 Sum_probs=18.8
Q ss_pred CeEEEEecCCCcHHHHHHHH
Q 029512 93 PEIAFAGRSNVGKSSMLNAL 112 (192)
Q Consensus 93 ~~i~lvG~~n~GKStlin~L 112 (192)
+.|+++|.+|+||||+.+.|
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHH
Confidence 47899999999999999999
No 317
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=96.38 E-value=0.0023 Score=49.13 Aligned_cols=24 Identities=33% Similarity=0.339 Sum_probs=21.4
Q ss_pred CCeEEEEecCCCcHHHHHHHHhhc
Q 029512 92 LPEIAFAGRSNVGKSSMLNALTRQ 115 (192)
Q Consensus 92 ~~~i~lvG~~n~GKStlin~L~~~ 115 (192)
...|+|+|.+|+||||+.+.|.+.
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~ 41 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEA 41 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 458999999999999999999864
No 318
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=96.37 E-value=0.0022 Score=49.42 Aligned_cols=24 Identities=25% Similarity=0.425 Sum_probs=21.9
Q ss_pred CCeEEEEecCCCcHHHHHHHHhhc
Q 029512 92 LPEIAFAGRSNVGKSSMLNALTRQ 115 (192)
Q Consensus 92 ~~~i~lvG~~n~GKStlin~L~~~ 115 (192)
...|+|+|.+|+||||+.+.|.+.
T Consensus 21 ~~~i~i~G~~GsGKSTl~~~L~~~ 44 (207)
T 2qt1_A 21 TFIIGISGVTNSGKTTLAKNLQKH 44 (207)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHh
Confidence 458999999999999999999986
No 319
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=96.36 E-value=0.0013 Score=54.72 Aligned_cols=24 Identities=17% Similarity=0.368 Sum_probs=21.9
Q ss_pred CCeEEEEecCCCcHHHHHHHHhhc
Q 029512 92 LPEIAFAGRSNVGKSSMLNALTRQ 115 (192)
Q Consensus 92 ~~~i~lvG~~n~GKStlin~L~~~ 115 (192)
.+.++|+|.+|+|||||+|.|.+.
T Consensus 4 i~v~~i~G~~GaGKTTll~~l~~~ 27 (318)
T 1nij_A 4 IAVTLLTGFLGAGKTTLLRHILNE 27 (318)
T ss_dssp EEEEEEEESSSSSCHHHHHHHHHS
T ss_pred ccEEEEEecCCCCHHHHHHHHHhh
Confidence 468899999999999999999975
No 320
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=96.32 E-value=0.0022 Score=57.17 Aligned_cols=22 Identities=27% Similarity=0.400 Sum_probs=20.7
Q ss_pred eEEEEecCCCcHHHHHHHHhhc
Q 029512 94 EIAFAGRSNVGKSSMLNALTRQ 115 (192)
Q Consensus 94 ~i~lvG~~n~GKStlin~L~~~ 115 (192)
.++++|++|+|||||+|+|++.
T Consensus 262 ~i~I~GptGSGKTTlL~aL~~~ 283 (511)
T 2oap_1 262 SAIVVGETASGKTTTLNAIMMF 283 (511)
T ss_dssp CEEEEESTTSSHHHHHHHHGGG
T ss_pred EEEEECCCCCCHHHHHHHHHhh
Confidence 5899999999999999999985
No 321
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=96.32 E-value=0.0024 Score=48.06 Aligned_cols=22 Identities=27% Similarity=0.270 Sum_probs=20.0
Q ss_pred eEEEEecCCCcHHHHHHHHhhc
Q 029512 94 EIAFAGRSNVGKSSMLNALTRQ 115 (192)
Q Consensus 94 ~i~lvG~~n~GKStlin~L~~~ 115 (192)
..+|+|++|+|||||+.+|...
T Consensus 28 ~~~i~G~NGsGKStll~ai~~~ 49 (182)
T 3kta_A 28 FTAIVGANGSGKSNIGDAILFV 49 (182)
T ss_dssp EEEEEECTTSSHHHHHHHHHHH
T ss_pred cEEEECCCCCCHHHHHHHHHHH
Confidence 7899999999999999999753
No 322
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=96.31 E-value=0.0026 Score=49.09 Aligned_cols=24 Identities=25% Similarity=0.398 Sum_probs=21.5
Q ss_pred CCCeEEEEecCCCcHHHHHHHHhh
Q 029512 91 DLPEIAFAGRSNVGKSSMLNALTR 114 (192)
Q Consensus 91 ~~~~i~lvG~~n~GKStlin~L~~ 114 (192)
....|+|+|.+|+||||+++.|.+
T Consensus 21 ~~~~i~i~G~~GsGKstl~~~l~~ 44 (201)
T 1rz3_A 21 GRLVLGIDGLSRSGKTTLANQLSQ 44 (201)
T ss_dssp SSEEEEEEECTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 345899999999999999999986
No 323
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=96.29 E-value=0.0024 Score=57.47 Aligned_cols=26 Identities=35% Similarity=0.528 Sum_probs=22.9
Q ss_pred CCCeEEEEecCCCcHHHHHHHHhhcc
Q 029512 91 DLPEIAFAGRSNVGKSSMLNALTRQW 116 (192)
Q Consensus 91 ~~~~i~lvG~~n~GKStlin~L~~~~ 116 (192)
.+-.++++|++|+|||||++.|+|-.
T Consensus 368 ~G~~~~ivG~sGsGKSTLl~~l~g~~ 393 (582)
T 3b60_A 368 AGKTVALVGRSGSGKSTIASLITRFY 393 (582)
T ss_dssp TTCEEEEEECTTSSHHHHHHHHTTTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhhcc
Confidence 45589999999999999999999853
No 324
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=96.27 E-value=0.0021 Score=55.92 Aligned_cols=23 Identities=30% Similarity=0.309 Sum_probs=21.1
Q ss_pred CeEEEEecCCCcHHHHHHHHhhc
Q 029512 93 PEIAFAGRSNVGKSSMLNALTRQ 115 (192)
Q Consensus 93 ~~i~lvG~~n~GKStlin~L~~~ 115 (192)
-.++|+|++|+|||||+++|++.
T Consensus 168 gii~I~GpnGSGKTTlL~allg~ 190 (418)
T 1p9r_A 168 GIILVTGPTGSGKSTTLYAGLQE 190 (418)
T ss_dssp EEEEEECSTTSCHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHhh
Confidence 37899999999999999999985
No 325
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=96.26 E-value=0.0021 Score=50.78 Aligned_cols=25 Identities=20% Similarity=0.329 Sum_probs=22.4
Q ss_pred CCCeEEEEecCCCcHHHHHHHHhhc
Q 029512 91 DLPEIAFAGRSNVGKSSMLNALTRQ 115 (192)
Q Consensus 91 ~~~~i~lvG~~n~GKStlin~L~~~ 115 (192)
.+..|+|.|.+|+||||+++.|.+.
T Consensus 19 ~g~~i~i~G~~GsGKSTl~~~L~~~ 43 (230)
T 2vp4_A 19 QPFTVLIEGNIGSGKTTYLNHFEKY 43 (230)
T ss_dssp CCEEEEEECSTTSCHHHHHHTTGGG
T ss_pred CceEEEEECCCCCCHHHHHHHHHhc
Confidence 4558999999999999999999875
No 326
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=96.24 E-value=0.0027 Score=56.79 Aligned_cols=25 Identities=24% Similarity=0.356 Sum_probs=22.5
Q ss_pred CCCeEEEEecCCCcHHHHHHHHhhc
Q 029512 91 DLPEIAFAGRSNVGKSSMLNALTRQ 115 (192)
Q Consensus 91 ~~~~i~lvG~~n~GKStlin~L~~~ 115 (192)
.+-.++|+|++|+|||||++.|+|.
T Consensus 46 ~Ge~~~LvG~NGaGKSTLlk~l~Gl 70 (538)
T 1yqt_A 46 EGMVVGIVGPNGTGKSTAVKILAGQ 70 (538)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHTS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4458999999999999999999985
No 327
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=96.23 E-value=0.0026 Score=57.27 Aligned_cols=26 Identities=38% Similarity=0.570 Sum_probs=23.0
Q ss_pred CCCeEEEEecCCCcHHHHHHHHhhcc
Q 029512 91 DLPEIAFAGRSNVGKSSMLNALTRQW 116 (192)
Q Consensus 91 ~~~~i~lvG~~n~GKStlin~L~~~~ 116 (192)
.+-.++++|++|+|||||++.|+|-.
T Consensus 368 ~G~~~~ivG~sGsGKSTll~~l~g~~ 393 (582)
T 3b5x_A 368 QGKTVALVGRSGSGKSTIANLFTRFY 393 (582)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 45589999999999999999999863
No 328
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=96.21 E-value=0.0028 Score=48.72 Aligned_cols=23 Identities=22% Similarity=0.333 Sum_probs=20.6
Q ss_pred CeEEEEecCCCcHHHHHHHHhhc
Q 029512 93 PEIAFAGRSNVGKSSMLNALTRQ 115 (192)
Q Consensus 93 ~~i~lvG~~n~GKStlin~L~~~ 115 (192)
..|+|+|.+|+||||+.+.|.+.
T Consensus 3 ~~i~l~G~~GsGKST~~~~La~l 25 (206)
T 1jjv_A 3 YIVGLTGGIGSGKTTIANLFTDL 25 (206)
T ss_dssp EEEEEECSTTSCHHHHHHHHHTT
T ss_pred cEEEEECCCCCCHHHHHHHHHHC
Confidence 36899999999999999999873
No 329
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=96.20 E-value=0.003 Score=48.00 Aligned_cols=22 Identities=27% Similarity=0.520 Sum_probs=20.4
Q ss_pred eEEEEecCCCcHHHHHHHHhhc
Q 029512 94 EIAFAGRSNVGKSSMLNALTRQ 115 (192)
Q Consensus 94 ~i~lvG~~n~GKStlin~L~~~ 115 (192)
.|+|+|.+|+||||+.+.|...
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~ 23 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKK 23 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHHh
Confidence 6899999999999999999874
No 330
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=96.19 E-value=0.0028 Score=47.67 Aligned_cols=23 Identities=26% Similarity=0.281 Sum_probs=20.7
Q ss_pred CeEEEEecCCCcHHHHHHHHhhc
Q 029512 93 PEIAFAGRSNVGKSSMLNALTRQ 115 (192)
Q Consensus 93 ~~i~lvG~~n~GKStlin~L~~~ 115 (192)
..|+|.|.+|+||||+.+.|...
T Consensus 2 ~~I~i~G~~GsGKsT~~~~L~~~ 24 (194)
T 1nks_A 2 KIGIVTGIPGVGKSTVLAKVKEI 24 (194)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 36899999999999999999874
No 331
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=96.18 E-value=0.0034 Score=46.88 Aligned_cols=23 Identities=30% Similarity=0.445 Sum_probs=20.9
Q ss_pred CeEEEEecCCCcHHHHHHHHhhc
Q 029512 93 PEIAFAGRSNVGKSSMLNALTRQ 115 (192)
Q Consensus 93 ~~i~lvG~~n~GKStlin~L~~~ 115 (192)
..|+++|.+|+||||+.+.|...
T Consensus 4 ~~i~l~G~~GsGKST~a~~La~~ 26 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGIVRCLQSV 26 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHh
Confidence 47899999999999999999874
No 332
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=96.16 E-value=0.0023 Score=57.77 Aligned_cols=26 Identities=35% Similarity=0.443 Sum_probs=23.1
Q ss_pred CCCeEEEEecCCCcHHHHHHHHhhcc
Q 029512 91 DLPEIAFAGRSNVGKSSMLNALTRQW 116 (192)
Q Consensus 91 ~~~~i~lvG~~n~GKStlin~L~~~~ 116 (192)
.+-.++++|++|+|||||++.|+|-.
T Consensus 369 ~G~~~~ivG~sGsGKSTLl~~l~g~~ 394 (595)
T 2yl4_A 369 SGSVTALVGPSGSGKSTVLSLLLRLY 394 (595)
T ss_dssp TTCEEEEECCTTSSSTHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCc
Confidence 45589999999999999999999864
No 333
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=96.14 E-value=0.0033 Score=46.80 Aligned_cols=21 Identities=24% Similarity=0.219 Sum_probs=19.8
Q ss_pred eEEEEecCCCcHHHHHHHHhh
Q 029512 94 EIAFAGRSNVGKSSMLNALTR 114 (192)
Q Consensus 94 ~i~lvG~~n~GKStlin~L~~ 114 (192)
.|+++|.+|+||||+.+.|..
T Consensus 4 ~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 4 IILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEecCCCCCHHHHHHHHHh
Confidence 689999999999999999987
No 334
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=96.13 E-value=0.0029 Score=50.35 Aligned_cols=21 Identities=24% Similarity=0.515 Sum_probs=20.1
Q ss_pred EEEEecCCCcHHHHHHHHhhc
Q 029512 95 IAFAGRSNVGKSSMLNALTRQ 115 (192)
Q Consensus 95 i~lvG~~n~GKStlin~L~~~ 115 (192)
++|+|++|+|||||+++|.+.
T Consensus 52 ~ll~G~~G~GKTtl~~~i~~~ 72 (254)
T 1ixz_A 52 VLLVGPPGVGKTHLARAVAGE 72 (254)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 999999999999999999985
No 335
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=96.12 E-value=0.0028 Score=51.65 Aligned_cols=22 Identities=23% Similarity=0.424 Sum_probs=20.6
Q ss_pred EEEEecCCCcHHHHHHHHhhcc
Q 029512 95 IAFAGRSNVGKSSMLNALTRQW 116 (192)
Q Consensus 95 i~lvG~~n~GKStlin~L~~~~ 116 (192)
++|+|++|+|||||+++|.+..
T Consensus 47 vlL~Gp~GtGKTtLakala~~~ 68 (274)
T 2x8a_A 47 VLLAGPPGCGKTLLAKAVANES 68 (274)
T ss_dssp EEEESSTTSCHHHHHHHHHHHT
T ss_pred EEEECCCCCcHHHHHHHHHHHc
Confidence 9999999999999999999863
No 336
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=96.11 E-value=0.0038 Score=47.64 Aligned_cols=24 Identities=13% Similarity=0.289 Sum_probs=21.6
Q ss_pred CCeEEEEecCCCcHHHHHHHHhhc
Q 029512 92 LPEIAFAGRSNVGKSSMLNALTRQ 115 (192)
Q Consensus 92 ~~~i~lvG~~n~GKStlin~L~~~ 115 (192)
.+.++++|.+|+|||||++.|...
T Consensus 4 ~~~i~i~G~sGsGKTTl~~~L~~~ 27 (169)
T 1xjc_A 4 MNVWQVVGYKHSGKTTLMEKWVAA 27 (169)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHHh
Confidence 568999999999999999999864
No 337
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=96.11 E-value=0.0035 Score=52.60 Aligned_cols=25 Identities=32% Similarity=0.248 Sum_probs=21.9
Q ss_pred CCCeEEEEecCCCcHHHHHHHHhhc
Q 029512 91 DLPEIAFAGRSNVGKSSMLNALTRQ 115 (192)
Q Consensus 91 ~~~~i~lvG~~n~GKStlin~L~~~ 115 (192)
....|+|+|++|+|||||++.|.+.
T Consensus 91 ~p~iigI~GpsGSGKSTl~~~L~~l 115 (321)
T 3tqc_A 91 VPYIIGIAGSVAVGKSTTSRVLKAL 115 (321)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHH
Confidence 3458999999999999999999875
No 338
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=96.11 E-value=0.0035 Score=51.71 Aligned_cols=25 Identities=24% Similarity=0.126 Sum_probs=21.9
Q ss_pred CCCeEEEEecCCCcHHHHHHHHhhc
Q 029512 91 DLPEIAFAGRSNVGKSSMLNALTRQ 115 (192)
Q Consensus 91 ~~~~i~lvG~~n~GKStlin~L~~~ 115 (192)
....|+|+|.+|+|||||.+.|.+.
T Consensus 30 ~~~ii~I~G~sGsGKSTla~~L~~~ 54 (290)
T 1odf_A 30 CPLFIFFSGPQGSGKSFTSIQIYNH 54 (290)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 3558999999999999999999864
No 339
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=96.10 E-value=0.0027 Score=57.43 Aligned_cols=26 Identities=27% Similarity=0.506 Sum_probs=23.0
Q ss_pred CCCeEEEEecCCCcHHHHHHHHhhcc
Q 029512 91 DLPEIAFAGRSNVGKSSMLNALTRQW 116 (192)
Q Consensus 91 ~~~~i~lvG~~n~GKStlin~L~~~~ 116 (192)
.+-.++++|++|+|||||++.|+|-.
T Consensus 380 ~G~~~~ivG~sGsGKSTll~~l~g~~ 405 (598)
T 3qf4_B 380 PGQKVALVGPTGSGKTTIVNLLMRFY 405 (598)
T ss_dssp TTCEEEEECCTTSSTTHHHHHHTTSS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhcCc
Confidence 45589999999999999999999853
No 340
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=96.09 E-value=0.0039 Score=46.82 Aligned_cols=23 Identities=13% Similarity=0.212 Sum_probs=20.8
Q ss_pred CeEEEEecCCCcHHHHHHHHhhc
Q 029512 93 PEIAFAGRSNVGKSSMLNALTRQ 115 (192)
Q Consensus 93 ~~i~lvG~~n~GKStlin~L~~~ 115 (192)
..|+|.|.+|+||||+.+.|...
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L~~~ 26 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLAMDN 26 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 47999999999999999999864
No 341
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=96.07 E-value=0.005 Score=46.71 Aligned_cols=25 Identities=24% Similarity=0.365 Sum_probs=22.3
Q ss_pred CCCeEEEEecCCCcHHHHHHHHhhc
Q 029512 91 DLPEIAFAGRSNVGKSSMLNALTRQ 115 (192)
Q Consensus 91 ~~~~i~lvG~~n~GKStlin~L~~~ 115 (192)
....|+|+|.+|+||||+.+.|...
T Consensus 9 ~~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 9 KGINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp SSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHh
Confidence 4568999999999999999999875
No 342
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=96.07 E-value=0.0031 Score=55.80 Aligned_cols=23 Identities=17% Similarity=0.341 Sum_probs=21.2
Q ss_pred CeEEEEecCCCcHHHHHHHHhhc
Q 029512 93 PEIAFAGRSNVGKSSMLNALTRQ 115 (192)
Q Consensus 93 ~~i~lvG~~n~GKStlin~L~~~ 115 (192)
-.++|+|++|+|||||++.|+|-
T Consensus 30 e~~~liG~nGsGKSTLl~~l~Gl 52 (483)
T 3euj_A 30 LVTTLSGGNGAGKSTTMAGFVTA 52 (483)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHH
T ss_pred ceEEEECCCCCcHHHHHHHHhcC
Confidence 47899999999999999999975
No 343
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=96.04 E-value=0.0038 Score=56.72 Aligned_cols=26 Identities=23% Similarity=0.363 Sum_probs=22.9
Q ss_pred CCCeEEEEecCCCcHHHHHHHHhhcc
Q 029512 91 DLPEIAFAGRSNVGKSSMLNALTRQW 116 (192)
Q Consensus 91 ~~~~i~lvG~~n~GKStlin~L~~~~ 116 (192)
.+-.++|+|++|+|||||++.|+|..
T Consensus 102 ~Gei~~LvGpNGaGKSTLLkiL~Gll 127 (608)
T 3j16_B 102 PGQVLGLVGTNGIGKSTALKILAGKQ 127 (608)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCCEEEEECCCCChHHHHHHHHhcCC
Confidence 35589999999999999999999853
No 344
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=96.04 E-value=0.0033 Score=56.30 Aligned_cols=24 Identities=25% Similarity=0.477 Sum_probs=21.8
Q ss_pred CCeEEEEecCCCcHHHHHHHHhhc
Q 029512 92 LPEIAFAGRSNVGKSSMLNALTRQ 115 (192)
Q Consensus 92 ~~~i~lvG~~n~GKStlin~L~~~ 115 (192)
+-.++|+|++|+|||||++.|+|.
T Consensus 25 Gei~gLiGpNGaGKSTLlkiL~Gl 48 (538)
T 3ozx_A 25 NTILGVLGKNGVGKTTVLKILAGE 48 (538)
T ss_dssp TEEEEEECCTTSSHHHHHHHHTTS
T ss_pred CCEEEEECCCCCcHHHHHHHHhcC
Confidence 347899999999999999999985
No 345
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=96.04 E-value=0.0023 Score=57.55 Aligned_cols=26 Identities=35% Similarity=0.553 Sum_probs=22.9
Q ss_pred CCCeEEEEecCCCcHHHHHHHHhhcc
Q 029512 91 DLPEIAFAGRSNVGKSSMLNALTRQW 116 (192)
Q Consensus 91 ~~~~i~lvG~~n~GKStlin~L~~~~ 116 (192)
.+-.++++|++|+|||||++.|.|-.
T Consensus 366 ~G~~~~ivG~sGsGKSTll~~l~g~~ 391 (578)
T 4a82_A 366 KGETVAFVGMSGGGKSTLINLIPRFY 391 (578)
T ss_dssp TTCEEEEECSTTSSHHHHHTTTTTSS
T ss_pred CCCEEEEECCCCChHHHHHHHHhcCC
Confidence 45589999999999999999999853
No 346
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=96.03 E-value=0.011 Score=48.53 Aligned_cols=24 Identities=21% Similarity=0.391 Sum_probs=21.2
Q ss_pred CCeEEEEecCCCcHHHHHHHHhhc
Q 029512 92 LPEIAFAGRSNVGKSSMLNALTRQ 115 (192)
Q Consensus 92 ~~~i~lvG~~n~GKStlin~L~~~ 115 (192)
...|+++|+||+||||+.+.|...
T Consensus 33 ~~livl~G~sGsGKSTla~~L~~~ 56 (287)
T 1gvn_B 33 PTAFLLGGQPGSGKTSLRSAIFEE 56 (287)
T ss_dssp CEEEEEECCTTSCTHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 457899999999999999999754
No 347
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=96.02 E-value=0.0041 Score=46.88 Aligned_cols=24 Identities=25% Similarity=0.368 Sum_probs=20.9
Q ss_pred CCeEEEEecCCCcHHHHHHHHhhc
Q 029512 92 LPEIAFAGRSNVGKSSMLNALTRQ 115 (192)
Q Consensus 92 ~~~i~lvG~~n~GKStlin~L~~~ 115 (192)
...|+++|.+|+||||+.+.|...
T Consensus 5 ~~~I~l~G~~GsGKST~~~~L~~~ 28 (193)
T 2rhm_A 5 PALIIVTGHPATGKTTLSQALATG 28 (193)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 347899999999999999999753
No 348
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=96.02 E-value=0.0045 Score=46.55 Aligned_cols=24 Identities=29% Similarity=0.398 Sum_probs=21.3
Q ss_pred CCeEEEEecCCCcHHHHHHHHhhc
Q 029512 92 LPEIAFAGRSNVGKSSMLNALTRQ 115 (192)
Q Consensus 92 ~~~i~lvG~~n~GKStlin~L~~~ 115 (192)
...|+++|.+|+||||+.+.|...
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~~ 28 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAKL 28 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHH
Confidence 458999999999999999999754
No 349
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=96.01 E-value=0.0043 Score=52.51 Aligned_cols=26 Identities=27% Similarity=0.242 Sum_probs=23.3
Q ss_pred CCCeEEEEecCCCcHHHHHHHHhhcc
Q 029512 91 DLPEIAFAGRSNVGKSSMLNALTRQW 116 (192)
Q Consensus 91 ~~~~i~lvG~~n~GKStlin~L~~~~ 116 (192)
.+-.++|+|++|+|||||++.|+|..
T Consensus 70 ~Gq~~gIiG~nGaGKTTLl~~I~g~~ 95 (347)
T 2obl_A 70 IGQRIGIFAGSGVGKSTLLGMICNGA 95 (347)
T ss_dssp TTCEEEEEECTTSSHHHHHHHHHHHS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 35589999999999999999999874
No 350
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=96.00 E-value=0.0029 Score=57.06 Aligned_cols=26 Identities=27% Similarity=0.395 Sum_probs=22.9
Q ss_pred CCCeEEEEecCCCcHHHHHHHHhhcc
Q 029512 91 DLPEIAFAGRSNVGKSSMLNALTRQW 116 (192)
Q Consensus 91 ~~~~i~lvG~~n~GKStlin~L~~~~ 116 (192)
.+-.++++|++|+|||||++.|.|-.
T Consensus 368 ~Ge~~~ivG~sGsGKSTll~~l~g~~ 393 (587)
T 3qf4_A 368 PGSLVAVLGETGSGKSTLMNLIPRLI 393 (587)
T ss_dssp TTCEEEEECSSSSSHHHHHHTTTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCc
Confidence 45589999999999999999999853
No 351
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=95.98 E-value=0.0051 Score=46.49 Aligned_cols=25 Identities=16% Similarity=0.197 Sum_probs=21.9
Q ss_pred CCCeEEEEecCCCcHHHHHHHHhhc
Q 029512 91 DLPEIAFAGRSNVGKSSMLNALTRQ 115 (192)
Q Consensus 91 ~~~~i~lvG~~n~GKStlin~L~~~ 115 (192)
....|+++|.+|+||||+.+.|...
T Consensus 12 ~~~~i~l~G~~GsGKsT~~~~L~~~ 36 (186)
T 2yvu_A 12 KGIVVWLTGLPGSGKTTIATRLADL 36 (186)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHH
Confidence 3568999999999999999999864
No 352
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=95.96 E-value=0.005 Score=47.51 Aligned_cols=23 Identities=22% Similarity=0.157 Sum_probs=20.6
Q ss_pred CCeEEEEecCCCcHHHHHHHHhh
Q 029512 92 LPEIAFAGRSNVGKSSMLNALTR 114 (192)
Q Consensus 92 ~~~i~lvG~~n~GKStlin~L~~ 114 (192)
+-.++|+|++|+|||||++.|++
T Consensus 23 G~~~~i~G~~GsGKTtl~~~l~~ 45 (235)
T 2w0m_A 23 GFFIALTGEPGTGKTIFSLHFIA 45 (235)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHH
Confidence 34789999999999999999985
No 353
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=95.96 E-value=0.0042 Score=56.44 Aligned_cols=25 Identities=24% Similarity=0.373 Sum_probs=22.5
Q ss_pred CCCeEEEEecCCCcHHHHHHHHhhc
Q 029512 91 DLPEIAFAGRSNVGKSSMLNALTRQ 115 (192)
Q Consensus 91 ~~~~i~lvG~~n~GKStlin~L~~~ 115 (192)
.+-.++|+|++|+|||||++.|.|.
T Consensus 116 ~Ge~~~LiG~NGsGKSTLlkiL~Gl 140 (607)
T 3bk7_A 116 DGMVVGIVGPNGTGKTTAVKILAGQ 140 (607)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHTTS
T ss_pred CCCEEEEECCCCChHHHHHHHHhCC
Confidence 4458999999999999999999985
No 354
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=95.93 E-value=0.0059 Score=46.49 Aligned_cols=24 Identities=21% Similarity=0.272 Sum_probs=21.8
Q ss_pred CCeEEEEecCCCcHHHHHHHHhhc
Q 029512 92 LPEIAFAGRSNVGKSSMLNALTRQ 115 (192)
Q Consensus 92 ~~~i~lvG~~n~GKStlin~L~~~ 115 (192)
...|+|.|.+|+||||+.+.|...
T Consensus 4 ~~~I~l~G~~GsGKsT~~~~L~~~ 27 (204)
T 2v54_A 4 GALIVFEGLDKSGKTTQCMNIMES 27 (204)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHT
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHH
Confidence 458999999999999999999875
No 355
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=95.91 E-value=0.0024 Score=49.11 Aligned_cols=22 Identities=27% Similarity=0.466 Sum_probs=20.1
Q ss_pred eEEEEecCCCcHHHHHHHHhhc
Q 029512 94 EIAFAGRSNVGKSSMLNALTRQ 115 (192)
Q Consensus 94 ~i~lvG~~n~GKStlin~L~~~ 115 (192)
.|+|+|.+|+||||+++.|...
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~ 23 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGA 23 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHH
Confidence 5899999999999999999864
No 356
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=95.89 E-value=0.0058 Score=49.78 Aligned_cols=24 Identities=25% Similarity=0.242 Sum_probs=21.1
Q ss_pred CCeEEEEecCCCcHHHHHHHHhhc
Q 029512 92 LPEIAFAGRSNVGKSSMLNALTRQ 115 (192)
Q Consensus 92 ~~~i~lvG~~n~GKStlin~L~~~ 115 (192)
+-.++|+|++|+|||||++.|++.
T Consensus 35 G~~~~i~G~~G~GKTTl~~~ia~~ 58 (296)
T 1cr0_A 35 GEVIMVTSGSGMGKSTFVRQQALQ 58 (296)
T ss_dssp TCEEEEEESTTSSHHHHHHHHHHH
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHH
Confidence 448899999999999999998863
No 357
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=95.88 E-value=0.0043 Score=50.15 Aligned_cols=21 Identities=24% Similarity=0.515 Sum_probs=20.1
Q ss_pred EEEEecCCCcHHHHHHHHhhc
Q 029512 95 IAFAGRSNVGKSSMLNALTRQ 115 (192)
Q Consensus 95 i~lvG~~n~GKStlin~L~~~ 115 (192)
++|+|++|+|||||+++|.+.
T Consensus 76 vll~Gp~GtGKTtl~~~i~~~ 96 (278)
T 1iy2_A 76 VLLVGPPGVGKTHLARAVAGE 96 (278)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEECCCcChHHHHHHHHHHH
Confidence 999999999999999999986
No 358
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=95.87 E-value=0.0054 Score=46.02 Aligned_cols=24 Identities=33% Similarity=0.645 Sum_probs=21.3
Q ss_pred CCeEEEEecCCCcHHHHHHHHhhc
Q 029512 92 LPEIAFAGRSNVGKSSMLNALTRQ 115 (192)
Q Consensus 92 ~~~i~lvG~~n~GKStlin~L~~~ 115 (192)
...|+++|.+|+||||+.+.|...
T Consensus 11 ~~~i~i~G~~GsGKst~~~~l~~~ 34 (180)
T 3iij_A 11 LPNILLTGTPGVGKTTLGKELASK 34 (180)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHHH
T ss_pred CCeEEEEeCCCCCHHHHHHHHHHH
Confidence 457999999999999999999854
No 359
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=95.86 E-value=0.0065 Score=45.87 Aligned_cols=24 Identities=17% Similarity=0.250 Sum_probs=21.3
Q ss_pred CCeEEEEecCCCcHHHHHHHHhhc
Q 029512 92 LPEIAFAGRSNVGKSSMLNALTRQ 115 (192)
Q Consensus 92 ~~~i~lvG~~n~GKStlin~L~~~ 115 (192)
...|+|+|.+|+||||+.+.|...
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~La~~ 32 (196)
T 2c95_A 9 TNIIFVVGGPGSGKGTQCEKIVQK 32 (196)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHH
Confidence 458999999999999999999753
No 360
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=95.85 E-value=0.0052 Score=53.65 Aligned_cols=26 Identities=27% Similarity=0.311 Sum_probs=23.3
Q ss_pred CCCeEEEEecCCCcHHHHHHHHhhcc
Q 029512 91 DLPEIAFAGRSNVGKSSMLNALTRQW 116 (192)
Q Consensus 91 ~~~~i~lvG~~n~GKStlin~L~~~~ 116 (192)
.+-.++|+|++|+|||||++.|++..
T Consensus 156 ~Gq~~~IvG~sGsGKSTLl~~Iag~~ 181 (438)
T 2dpy_A 156 RGQRMGLFAGSGVGKSVLLGMMARYT 181 (438)
T ss_dssp TTCEEEEEECTTSSHHHHHHHHHHHS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhccc
Confidence 45689999999999999999999874
No 361
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=95.84 E-value=0.0031 Score=62.09 Aligned_cols=26 Identities=31% Similarity=0.459 Sum_probs=23.0
Q ss_pred CCCeEEEEecCCCcHHHHHHHHhhcc
Q 029512 91 DLPEIAFAGRSNVGKSSMLNALTRQW 116 (192)
Q Consensus 91 ~~~~i~lvG~~n~GKStlin~L~~~~ 116 (192)
++-+|+|||+||+|||||++.|++-.
T Consensus 1104 ~Ge~vaIVG~SGsGKSTL~~lL~rl~ 1129 (1321)
T 4f4c_A 1104 PGQTLALVGPSGCGKSTVVALLERFY 1129 (1321)
T ss_dssp TTCEEEEECSTTSSTTSHHHHHTTSS
T ss_pred CCCEEEEECCCCChHHHHHHHHhcCc
Confidence 45599999999999999999999753
No 362
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=95.80 E-value=0.0056 Score=46.01 Aligned_cols=22 Identities=23% Similarity=0.462 Sum_probs=20.1
Q ss_pred CeEEEEecCCCcHHHHHHHHhh
Q 029512 93 PEIAFAGRSNVGKSSMLNALTR 114 (192)
Q Consensus 93 ~~i~lvG~~n~GKStlin~L~~ 114 (192)
..|+++|.+|+||||+.+.|..
T Consensus 5 ~~I~l~G~~GsGKST~~~~La~ 26 (186)
T 3cm0_A 5 QAVIFLGPPGAGKGTQASRLAQ 26 (186)
T ss_dssp EEEEEECCTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999985
No 363
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=95.80 E-value=0.0055 Score=46.02 Aligned_cols=24 Identities=25% Similarity=0.234 Sum_probs=21.3
Q ss_pred CCeEEEEecCCCcHHHHHHHHhhc
Q 029512 92 LPEIAFAGRSNVGKSSMLNALTRQ 115 (192)
Q Consensus 92 ~~~i~lvG~~n~GKStlin~L~~~ 115 (192)
+..|+|+|.+|+||||+.+.|.+.
T Consensus 5 g~~i~l~G~~GsGKST~~~~L~~~ 28 (179)
T 2pez_A 5 GCTVWLTGLSGAGKTTVSMALEEY 28 (179)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHH
Confidence 447899999999999999999874
No 364
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=95.80 E-value=0.0064 Score=47.35 Aligned_cols=24 Identities=13% Similarity=0.270 Sum_probs=21.4
Q ss_pred CCeEEEEecCCCcHHHHHHHHhhc
Q 029512 92 LPEIAFAGRSNVGKSSMLNALTRQ 115 (192)
Q Consensus 92 ~~~i~lvG~~n~GKStlin~L~~~ 115 (192)
...|+|+|.+|+||||+.+.|...
T Consensus 5 ~~~I~l~G~~GsGKsT~~~~La~~ 28 (222)
T 1zak_A 5 PLKVMISGAPASGKGTQCELIKTK 28 (222)
T ss_dssp SCCEEEEESTTSSHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 457999999999999999999864
No 365
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=95.79 E-value=0.0058 Score=51.00 Aligned_cols=23 Identities=17% Similarity=0.494 Sum_probs=21.1
Q ss_pred CeEEEEecCCCcHHHHHHHHhhc
Q 029512 93 PEIAFAGRSNVGKSSMLNALTRQ 115 (192)
Q Consensus 93 ~~i~lvG~~n~GKStlin~L~~~ 115 (192)
..++|+|++|+|||||++.|++.
T Consensus 52 ~~~ll~Gp~G~GKTTLa~~ia~~ 74 (334)
T 1in4_A 52 DHVLLAGPPGLGKTTLAHIIASE 74 (334)
T ss_dssp CCEEEESSTTSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHHHHHH
Confidence 46899999999999999999986
No 366
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=95.77 E-value=0.0071 Score=46.34 Aligned_cols=24 Identities=29% Similarity=0.267 Sum_probs=21.5
Q ss_pred CCeEEEEecCCCcHHHHHHHHhhc
Q 029512 92 LPEIAFAGRSNVGKSSMLNALTRQ 115 (192)
Q Consensus 92 ~~~i~lvG~~n~GKStlin~L~~~ 115 (192)
...|+|.|.+|+||||+.+.|...
T Consensus 10 ~~~I~l~G~~GsGKST~~~~L~~~ 33 (212)
T 2wwf_A 10 GKFIVFEGLDRSGKSTQSKLLVEY 33 (212)
T ss_dssp SCEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHH
Confidence 458999999999999999999864
No 367
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=95.74 E-value=0.0067 Score=46.08 Aligned_cols=24 Identities=25% Similarity=0.228 Sum_probs=21.6
Q ss_pred CCeEEEEecCCCcHHHHHHHHhhc
Q 029512 92 LPEIAFAGRSNVGKSSMLNALTRQ 115 (192)
Q Consensus 92 ~~~i~lvG~~n~GKStlin~L~~~ 115 (192)
...|+|+|.+|+||||+.+.|...
T Consensus 8 ~~~I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 8 PIIIGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHT
T ss_pred ceEEEEECCCCCCHHHHHHHHHHC
Confidence 458999999999999999999865
No 368
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=95.74 E-value=0.0059 Score=46.60 Aligned_cols=23 Identities=39% Similarity=0.368 Sum_probs=21.0
Q ss_pred CeEEEEecCCCcHHHHHHHHhhc
Q 029512 93 PEIAFAGRSNVGKSSMLNALTRQ 115 (192)
Q Consensus 93 ~~i~lvG~~n~GKStlin~L~~~ 115 (192)
..|+|.|.+|+||||+.+.|...
T Consensus 5 ~~I~i~G~~GsGKsT~~~~L~~~ 27 (213)
T 2plr_A 5 VLIAFEGIDGSGKSSQATLLKDW 27 (213)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHH
Confidence 47999999999999999999875
No 369
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=95.73 E-value=0.0062 Score=49.22 Aligned_cols=24 Identities=17% Similarity=0.259 Sum_probs=21.4
Q ss_pred CCeEEEEecCCCcHHHHHHHHhhc
Q 029512 92 LPEIAFAGRSNVGKSSMLNALTRQ 115 (192)
Q Consensus 92 ~~~i~lvG~~n~GKStlin~L~~~ 115 (192)
...|+|+|.+|+||||+.+.|.+.
T Consensus 48 g~~i~l~G~~GsGKSTl~~~La~~ 71 (250)
T 3nwj_A 48 GRSMYLVGMMGSGKTTVGKIMARS 71 (250)
T ss_dssp TCCEEEECSTTSCHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHh
Confidence 458999999999999999999873
No 370
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=95.73 E-value=0.008 Score=46.06 Aligned_cols=24 Identities=25% Similarity=0.268 Sum_probs=21.4
Q ss_pred CCeEEEEecCCCcHHHHHHHHhhc
Q 029512 92 LPEIAFAGRSNVGKSSMLNALTRQ 115 (192)
Q Consensus 92 ~~~i~lvG~~n~GKStlin~L~~~ 115 (192)
...|+|.|.+|+||||+.+.|...
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~L~~~ 32 (215)
T 1nn5_A 9 GALIVLEGVDRAGKSTQSRKLVEA 32 (215)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHH
Confidence 458999999999999999999863
No 371
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=95.71 E-value=0.0062 Score=45.56 Aligned_cols=23 Identities=35% Similarity=0.551 Sum_probs=20.7
Q ss_pred CeEEEEecCCCcHHHHHHHHhhc
Q 029512 93 PEIAFAGRSNVGKSSMLNALTRQ 115 (192)
Q Consensus 93 ~~i~lvG~~n~GKStlin~L~~~ 115 (192)
..|+|+|.+|+||||+.+.|...
T Consensus 5 ~~i~i~G~~GsGKsTla~~La~~ 27 (175)
T 1via_A 5 KNIVFIGFMGSGKSTLARALAKD 27 (175)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHHH
Confidence 46999999999999999999864
No 372
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=95.70 E-value=0.0072 Score=47.26 Aligned_cols=24 Identities=21% Similarity=0.353 Sum_probs=21.4
Q ss_pred CCeEEEEecCCCcHHHHHHHHhhc
Q 029512 92 LPEIAFAGRSNVGKSSMLNALTRQ 115 (192)
Q Consensus 92 ~~~i~lvG~~n~GKStlin~L~~~ 115 (192)
...|+|+|.+|+||||+.+.|...
T Consensus 7 ~~~I~l~G~~GsGKsT~a~~La~~ 30 (227)
T 1zd8_A 7 LLRAVIMGAPGSGKGTVSSRITTH 30 (227)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHH
Confidence 468999999999999999999854
No 373
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=95.70 E-value=0.0061 Score=54.57 Aligned_cols=24 Identities=21% Similarity=0.338 Sum_probs=21.8
Q ss_pred CCeEEEEecCCCcHHHHHHHHhhc
Q 029512 92 LPEIAFAGRSNVGKSSMLNALTRQ 115 (192)
Q Consensus 92 ~~~i~lvG~~n~GKStlin~L~~~ 115 (192)
+-.++|+|++|+|||||++.|+|.
T Consensus 294 Gei~~i~G~nGsGKSTLl~~l~Gl 317 (538)
T 3ozx_A 294 GEIIGILGPNGIGKTTFARILVGE 317 (538)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTTS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 447899999999999999999985
No 374
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=95.70 E-value=0.0079 Score=44.43 Aligned_cols=24 Identities=21% Similarity=0.466 Sum_probs=21.2
Q ss_pred CCeEEEEecCCCcHHHHHHHHhhc
Q 029512 92 LPEIAFAGRSNVGKSSMLNALTRQ 115 (192)
Q Consensus 92 ~~~i~lvG~~n~GKStlin~L~~~ 115 (192)
...++|.|++|+|||++++.+...
T Consensus 43 ~~~~ll~G~~G~GKT~l~~~~~~~ 66 (195)
T 1jbk_A 43 KNNPVLIGEPGVGKTAIVEGLAQR 66 (195)
T ss_dssp SCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCceEEECCCCCCHHHHHHHHHHH
Confidence 347899999999999999999875
No 375
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=95.69 E-value=0.0056 Score=54.73 Aligned_cols=25 Identities=20% Similarity=0.308 Sum_probs=22.4
Q ss_pred CCeEEEEecCCCcHHHHHHHHhhcc
Q 029512 92 LPEIAFAGRSNVGKSSMLNALTRQW 116 (192)
Q Consensus 92 ~~~i~lvG~~n~GKStlin~L~~~~ 116 (192)
+-.++|+|++|+|||||++.|+|..
T Consensus 312 Ge~~~i~G~NGsGKSTLlk~l~Gl~ 336 (538)
T 1yqt_A 312 GEVIGIVGPNGIGKTTFVKMLAGVE 336 (538)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 4488999999999999999999963
No 376
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=95.69 E-value=0.0079 Score=46.20 Aligned_cols=23 Identities=13% Similarity=-0.038 Sum_probs=20.8
Q ss_pred CCeEEEEecCCCcHHHHHHHHhh
Q 029512 92 LPEIAFAGRSNVGKSSMLNALTR 114 (192)
Q Consensus 92 ~~~i~lvG~~n~GKStlin~L~~ 114 (192)
+-.++++|++|+|||||++.|++
T Consensus 20 G~~~~i~G~~GsGKTtl~~~l~~ 42 (220)
T 2cvh_A 20 GVLTQVYGPYASGKTTLALQTGL 42 (220)
T ss_dssp TSEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHH
Confidence 45889999999999999999975
No 377
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=95.67 E-value=0.0056 Score=52.00 Aligned_cols=20 Identities=30% Similarity=0.511 Sum_probs=18.6
Q ss_pred eEEEEecCCCcHHHHHHHHh
Q 029512 94 EIAFAGRSNVGKSSMLNALT 113 (192)
Q Consensus 94 ~i~lvG~~n~GKStlin~L~ 113 (192)
..+|+|++|+|||||+++|+
T Consensus 25 ~~~i~G~NGaGKTTll~ai~ 44 (365)
T 3qf7_A 25 ITVVEGPNGAGKSSLFEAIS 44 (365)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHH
Confidence 56799999999999999998
No 378
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=95.62 E-value=0.0084 Score=46.60 Aligned_cols=24 Identities=17% Similarity=0.284 Sum_probs=21.4
Q ss_pred CCeEEEEecCCCcHHHHHHHHhhc
Q 029512 92 LPEIAFAGRSNVGKSSMLNALTRQ 115 (192)
Q Consensus 92 ~~~i~lvG~~n~GKStlin~L~~~ 115 (192)
+..|+|+|.+|+||||+.+.|...
T Consensus 4 ~~~I~l~G~~GsGKsT~a~~La~~ 27 (220)
T 1aky_A 4 SIRMVLIGPPGAGKGTQAPNLQER 27 (220)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHH
Confidence 468999999999999999999764
No 379
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=95.61 E-value=0.0093 Score=45.55 Aligned_cols=25 Identities=20% Similarity=0.343 Sum_probs=21.7
Q ss_pred CCCeEEEEecCCCcHHHHHHHHhhc
Q 029512 91 DLPEIAFAGRSNVGKSSMLNALTRQ 115 (192)
Q Consensus 91 ~~~~i~lvG~~n~GKStlin~L~~~ 115 (192)
....|+|.|.+|+||||+.+.|...
T Consensus 14 ~~~~I~l~G~~GsGKsT~~~~L~~~ 38 (203)
T 1ukz_A 14 QVSVIFVLGGPGAGKGTQCEKLVKD 38 (203)
T ss_dssp TCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHH
Confidence 4458999999999999999999854
No 380
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=95.61 E-value=0.0076 Score=46.50 Aligned_cols=22 Identities=18% Similarity=0.394 Sum_probs=19.8
Q ss_pred eEEEEecCCCcHHHHHHHHhhc
Q 029512 94 EIAFAGRSNVGKSSMLNALTRQ 115 (192)
Q Consensus 94 ~i~lvG~~n~GKStlin~L~~~ 115 (192)
+|+|.|.+|+||||+.+.|...
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~ 23 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEK 23 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999999653
No 381
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=95.61 E-value=0.007 Score=44.80 Aligned_cols=20 Identities=35% Similarity=0.484 Sum_probs=18.6
Q ss_pred eEEEEecCCCcHHHHHHHHh
Q 029512 94 EIAFAGRSNVGKSSMLNALT 113 (192)
Q Consensus 94 ~i~lvG~~n~GKStlin~L~ 113 (192)
..+|+|++|+||||++.+|.
T Consensus 25 ~~~I~G~NGsGKStil~Ai~ 44 (149)
T 1f2t_A 25 INLIIGQNGSGKSSLLDAIL 44 (149)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHH
Confidence 67899999999999999987
No 382
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=95.60 E-value=0.0082 Score=46.39 Aligned_cols=22 Identities=14% Similarity=0.330 Sum_probs=19.9
Q ss_pred eEEEEecCCCcHHHHHHHHhhc
Q 029512 94 EIAFAGRSNVGKSSMLNALTRQ 115 (192)
Q Consensus 94 ~i~lvG~~n~GKStlin~L~~~ 115 (192)
+|+|+|.+|+||||+.+.|...
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~ 23 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEK 23 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999999754
No 383
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=95.57 E-value=0.0088 Score=45.23 Aligned_cols=23 Identities=22% Similarity=0.286 Sum_probs=20.9
Q ss_pred CeEEEEecCCCcHHHHHHHHhhc
Q 029512 93 PEIAFAGRSNVGKSSMLNALTRQ 115 (192)
Q Consensus 93 ~~i~lvG~~n~GKStlin~L~~~ 115 (192)
..|+|+|.+|+||||+.+.|...
T Consensus 13 ~~I~l~G~~GsGKsT~a~~L~~~ 35 (199)
T 2bwj_A 13 KIIFIIGGPGSGKGTQCEKLVEK 35 (199)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHH
Confidence 58999999999999999999864
No 384
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=95.56 E-value=0.011 Score=45.21 Aligned_cols=24 Identities=17% Similarity=0.263 Sum_probs=21.2
Q ss_pred CCeEEEEecCCCcHHHHHHHHhhc
Q 029512 92 LPEIAFAGRSNVGKSSMLNALTRQ 115 (192)
Q Consensus 92 ~~~i~lvG~~n~GKStlin~L~~~ 115 (192)
...|+|+|.+|+||||+.+.|...
T Consensus 20 ~~~I~l~G~~GsGKST~a~~La~~ 43 (201)
T 2cdn_A 20 HMRVLLLGPPGAGKGTQAVKLAEK 43 (201)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 358999999999999999999753
No 385
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=95.56 E-value=0.0085 Score=51.32 Aligned_cols=24 Identities=25% Similarity=0.293 Sum_probs=21.7
Q ss_pred CCeEEEEecCCCcHHHHHHHHhhc
Q 029512 92 LPEIAFAGRSNVGKSSMLNALTRQ 115 (192)
Q Consensus 92 ~~~i~lvG~~n~GKStlin~L~~~ 115 (192)
...++++|++|+|||||++.|.+.
T Consensus 169 ~~~i~l~G~~GsGKSTl~~~l~~~ 192 (377)
T 1svm_A 169 KRYWLFKGPIDSGKTTLAAALLEL 192 (377)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHhh
Confidence 458999999999999999999975
No 386
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=95.53 E-value=0.011 Score=51.13 Aligned_cols=67 Identities=19% Similarity=0.271 Sum_probs=42.2
Q ss_pred CeEEEEecCCCcHHHHHHHHhhccCceeec-CC-------CCceeEEEEE-eeCCeEEEEECCCCCCCCChHHHHH
Q 029512 93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTS-DK-------PGLTQTINFF-KLGTKLCLVDLPGYGFAYAKEEVKD 159 (192)
Q Consensus 93 ~~i~lvG~~n~GKStlin~L~~~~~~~~~~-~~-------~g~T~~~~~~-~~~~~~~lvDtPG~~~~~~~~~~~~ 159 (192)
+.|+|+|+||+|||||...|.........+ +. .-+|..+... ..+.+..++|.--+....+.....+
T Consensus 3 ~~i~i~GptgsGKttla~~La~~~~~~iis~Ds~QvYr~l~i~T~kp~~~E~~gv~hhlid~~~~~~~~s~~~F~~ 78 (409)
T 3eph_A 3 KVIVIAGTTGVGKSQLSIQLAQKFNGEVINSDSMQVYKDIPIITNKHPLQEREGIPHHVMNHVDWSEEYYSHRFET 78 (409)
T ss_dssp EEEEEEECSSSSHHHHHHHHHHHHTEEEEECCTTTTBSSCTTTTTCCCGGGTTTCCEESCSCBCTTSCCCHHHHHH
T ss_pred cEEEEECcchhhHHHHHHHHHHHCCCeEeecCccceecccccccCCCCHHHHcCchhhcCCccChHhHhhHHHHHH
Confidence 468999999999999999998653222222 11 1234443222 1367888888887766655544433
No 387
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=95.51 E-value=0.0076 Score=59.31 Aligned_cols=26 Identities=31% Similarity=0.512 Sum_probs=23.1
Q ss_pred CCCeEEEEecCCCcHHHHHHHHhhcc
Q 029512 91 DLPEIAFAGRSNVGKSSMLNALTRQW 116 (192)
Q Consensus 91 ~~~~i~lvG~~n~GKStlin~L~~~~ 116 (192)
.+-.+++||++|+|||||++.|.|..
T Consensus 443 ~G~~vaivG~sGsGKSTll~ll~~~~ 468 (1321)
T 4f4c_A 443 AGQTVALVGSSGCGKSTIISLLLRYY 468 (1321)
T ss_dssp TTCEEEEEECSSSCHHHHHHHHTTSS
T ss_pred CCcEEEEEecCCCcHHHHHHHhcccc
Confidence 45699999999999999999999854
No 388
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=95.51 E-value=0.0082 Score=54.53 Aligned_cols=25 Identities=20% Similarity=0.308 Sum_probs=22.3
Q ss_pred CCeEEEEecCCCcHHHHHHHHhhcc
Q 029512 92 LPEIAFAGRSNVGKSSMLNALTRQW 116 (192)
Q Consensus 92 ~~~i~lvG~~n~GKStlin~L~~~~ 116 (192)
+-.++|+|++|+|||||++.|+|..
T Consensus 382 Gei~~i~G~NGsGKSTLlk~l~Gl~ 406 (607)
T 3bk7_A 382 GEVIGIVGPNGIGKTTFVKMLAGVE 406 (607)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCC
Confidence 4478999999999999999999963
No 389
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=95.51 E-value=0.008 Score=46.88 Aligned_cols=23 Identities=17% Similarity=0.196 Sum_probs=21.1
Q ss_pred CCeEEEEecCCCcHHHHHHHHhh
Q 029512 92 LPEIAFAGRSNVGKSSMLNALTR 114 (192)
Q Consensus 92 ~~~i~lvG~~n~GKStlin~L~~ 114 (192)
+-.++|+|++|+|||||+..|++
T Consensus 24 G~~~~i~G~~GsGKTtl~~~l~~ 46 (243)
T 1n0w_A 24 GSITEMFGEFRTGKTQICHTLAV 46 (243)
T ss_dssp TSEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCcHHHHHHHHHH
Confidence 45889999999999999999988
No 390
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=95.51 E-value=0.0085 Score=47.92 Aligned_cols=24 Identities=21% Similarity=0.368 Sum_probs=21.3
Q ss_pred CCeEEEEecCCCcHHHHHHHHhhc
Q 029512 92 LPEIAFAGRSNVGKSSMLNALTRQ 115 (192)
Q Consensus 92 ~~~i~lvG~~n~GKStlin~L~~~ 115 (192)
...|+++|.+|+||||+.+.|...
T Consensus 32 ~~~i~l~G~~GsGKSTla~~L~~~ 55 (253)
T 2p5t_B 32 PIAILLGGQSGAGKTTIHRIKQKE 55 (253)
T ss_dssp CEEEEEESCGGGTTHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHh
Confidence 458899999999999999999864
No 391
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=95.47 E-value=0.0082 Score=45.35 Aligned_cols=22 Identities=32% Similarity=0.471 Sum_probs=20.1
Q ss_pred eEEEEecCCCcHHHHHHHHhhc
Q 029512 94 EIAFAGRSNVGKSSMLNALTRQ 115 (192)
Q Consensus 94 ~i~lvG~~n~GKStlin~L~~~ 115 (192)
.|++.|.+|+||||+.+.|...
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~ 23 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQY 23 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999999865
No 392
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=95.44 E-value=0.0093 Score=44.13 Aligned_cols=23 Identities=22% Similarity=0.340 Sum_probs=20.6
Q ss_pred CeEEEEecCCCcHHHHHHHHhhc
Q 029512 93 PEIAFAGRSNVGKSSMLNALTRQ 115 (192)
Q Consensus 93 ~~i~lvG~~n~GKStlin~L~~~ 115 (192)
..|+|.|.+|+||||+.+.|...
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~ 25 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELARA 25 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHH
Confidence 47999999999999999999864
No 393
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=95.43 E-value=0.009 Score=46.23 Aligned_cols=24 Identities=33% Similarity=0.302 Sum_probs=21.2
Q ss_pred CCeEEEEecCCCcHHHHHHHHhhc
Q 029512 92 LPEIAFAGRSNVGKSSMLNALTRQ 115 (192)
Q Consensus 92 ~~~i~lvG~~n~GKStlin~L~~~ 115 (192)
...|+++|.+|+||||+.+.|.+.
T Consensus 25 ~~~i~~~G~~GsGKsT~~~~l~~~ 48 (211)
T 1m7g_A 25 GLTIWLTGLSASGKSTLAVELEHQ 48 (211)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHH
Confidence 458899999999999999999864
No 394
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=95.42 E-value=0.0086 Score=44.95 Aligned_cols=23 Identities=13% Similarity=0.219 Sum_probs=20.3
Q ss_pred CeEEEEecCCCcHHHHHHHHhhc
Q 029512 93 PEIAFAGRSNVGKSSMLNALTRQ 115 (192)
Q Consensus 93 ~~i~lvG~~n~GKStlin~L~~~ 115 (192)
..|+|+|.+|+||||+.+.|...
T Consensus 4 ~~I~l~G~~GsGKsT~a~~L~~~ 26 (196)
T 1tev_A 4 LVVFVLGGPGAGKGTQCARIVEK 26 (196)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 47899999999999999998753
No 395
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=95.41 E-value=0.0079 Score=54.65 Aligned_cols=23 Identities=17% Similarity=0.437 Sum_probs=21.0
Q ss_pred eEEEEecCCCcHHHHHHHHhhcc
Q 029512 94 EIAFAGRSNVGKSSMLNALTRQW 116 (192)
Q Consensus 94 ~i~lvG~~n~GKStlin~L~~~~ 116 (192)
.++|+|++|+|||||++.|+|..
T Consensus 380 iv~iiG~NGsGKSTLlk~l~Gl~ 402 (608)
T 3j16_B 380 ILVMMGENGTGKTTLIKLLAGAL 402 (608)
T ss_dssp EEEEESCTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCCcHHHHHHHHhcCC
Confidence 57999999999999999999863
No 396
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=95.40 E-value=0.0087 Score=48.10 Aligned_cols=24 Identities=29% Similarity=0.430 Sum_probs=21.2
Q ss_pred CCeEEEEecCCCcHHHHHHHHhhc
Q 029512 92 LPEIAFAGRSNVGKSSMLNALTRQ 115 (192)
Q Consensus 92 ~~~i~lvG~~n~GKStlin~L~~~ 115 (192)
+..|+++|.+|+||||+.+.|...
T Consensus 4 ~~lIvl~G~pGSGKSTla~~La~~ 27 (260)
T 3a4m_A 4 IMLIILTGLPGVGKSTFSKNLAKI 27 (260)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHH
Confidence 458999999999999999999863
No 397
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=95.40 E-value=0.0096 Score=46.11 Aligned_cols=22 Identities=32% Similarity=0.424 Sum_probs=20.4
Q ss_pred CeEEEEecCCCcHHHHHHHHhh
Q 029512 93 PEIAFAGRSNVGKSSMLNALTR 114 (192)
Q Consensus 93 ~~i~lvG~~n~GKStlin~L~~ 114 (192)
..|+|.|.+|+||||+.+.|..
T Consensus 5 ~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 5 YIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp EEEEEECCTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999976
No 398
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=95.40 E-value=0.0083 Score=48.16 Aligned_cols=22 Identities=18% Similarity=0.237 Sum_probs=20.1
Q ss_pred eEEEEecCCCcHHHHHHHHhhc
Q 029512 94 EIAFAGRSNVGKSSMLNALTRQ 115 (192)
Q Consensus 94 ~i~lvG~~n~GKStlin~L~~~ 115 (192)
.|+|+|++|+|||||-+.|.+.
T Consensus 3 li~I~G~~GSGKSTla~~La~~ 24 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIAQE 24 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHhc
Confidence 6899999999999999999865
No 399
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=95.40 E-value=0.012 Score=44.10 Aligned_cols=23 Identities=17% Similarity=0.281 Sum_probs=20.5
Q ss_pred CeEEEEecCCCcHHHHHHHHhhc
Q 029512 93 PEIAFAGRSNVGKSSMLNALTRQ 115 (192)
Q Consensus 93 ~~i~lvG~~n~GKStlin~L~~~ 115 (192)
..|+|.|.+|+||||+.+.|...
T Consensus 7 ~~I~l~G~~GsGKsT~~~~L~~~ 29 (194)
T 1qf9_A 7 NVVFVLGGPGSGKGTQCANIVRD 29 (194)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHH
Confidence 47899999999999999999753
No 400
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=95.38 E-value=0.0099 Score=44.67 Aligned_cols=23 Identities=26% Similarity=0.476 Sum_probs=20.4
Q ss_pred CeEEEEecCCCcHHHHHHHHhhc
Q 029512 93 PEIAFAGRSNVGKSSMLNALTRQ 115 (192)
Q Consensus 93 ~~i~lvG~~n~GKStlin~L~~~ 115 (192)
+.|+|+|.+|+||||+-+.|...
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~ 25 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAKA 25 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 46999999999999999999753
No 401
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=95.38 E-value=0.011 Score=44.50 Aligned_cols=21 Identities=33% Similarity=0.449 Sum_probs=19.6
Q ss_pred eEEEEecCCCcHHHHHHHHhh
Q 029512 94 EIAFAGRSNVGKSSMLNALTR 114 (192)
Q Consensus 94 ~i~lvG~~n~GKStlin~L~~ 114 (192)
.|++.|.+|+||||+.+.|..
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~ 22 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYE 22 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999986
No 402
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=95.37 E-value=0.019 Score=45.61 Aligned_cols=23 Identities=17% Similarity=0.390 Sum_probs=20.9
Q ss_pred CeEEEEecCCCcHHHHHHHHhhc
Q 029512 93 PEIAFAGRSNVGKSSMLNALTRQ 115 (192)
Q Consensus 93 ~~i~lvG~~n~GKStlin~L~~~ 115 (192)
..++|+|++|+|||||.++|.+.
T Consensus 46 ~~vll~G~~GtGKT~la~~la~~ 68 (257)
T 1lv7_A 46 KGVLMVGPPGTGKTLLAKAIAGE 68 (257)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHH
T ss_pred CeEEEECcCCCCHHHHHHHHHHH
Confidence 46999999999999999999875
No 403
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.35 E-value=0.052 Score=47.39 Aligned_cols=25 Identities=16% Similarity=0.248 Sum_probs=22.0
Q ss_pred CCeEEEEecCCCcHHHHHHHHhhcc
Q 029512 92 LPEIAFAGRSNVGKSSMLNALTRQW 116 (192)
Q Consensus 92 ~~~i~lvG~~n~GKStlin~L~~~~ 116 (192)
..-|+|.|+||+|||+|.+++++..
T Consensus 215 prGvLL~GPPGtGKTllAkAiA~e~ 239 (437)
T 4b4t_L 215 PKGVLLYGPPGTGKTLLAKAVAATI 239 (437)
T ss_dssp CCEEEEESCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHh
Confidence 3478999999999999999999863
No 404
>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}
Probab=95.31 E-value=0.0037 Score=53.28 Aligned_cols=24 Identities=33% Similarity=0.389 Sum_probs=20.8
Q ss_pred CCCeEEEEecCCCcHHHHHHHHhhc
Q 029512 91 DLPEIAFAGRSNVGKSSMLNALTRQ 115 (192)
Q Consensus 91 ~~~~i~lvG~~n~GKStlin~L~~~ 115 (192)
.+ .++|+|++|+|||||+++|.+.
T Consensus 60 ~G-~~~lvG~NGaGKStLl~aI~~l 83 (415)
T 4aby_A 60 GG-FCAFTGETGAGKSIIVDALGLL 83 (415)
T ss_dssp SS-EEEEEESHHHHHHHHTHHHHHH
T ss_pred CC-cEEEECCCCCCHHHHHHHHHHH
Confidence 44 8999999999999999998643
No 405
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=95.28 E-value=0.012 Score=43.41 Aligned_cols=22 Identities=32% Similarity=0.356 Sum_probs=20.1
Q ss_pred eEEEEecCCCcHHHHHHHHhhc
Q 029512 94 EIAFAGRSNVGKSSMLNALTRQ 115 (192)
Q Consensus 94 ~i~lvG~~n~GKStlin~L~~~ 115 (192)
.|+|.|.+|+||||+.+.|...
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~ 23 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRS 23 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999999864
No 406
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=95.27 E-value=0.0089 Score=58.65 Aligned_cols=26 Identities=27% Similarity=0.477 Sum_probs=23.0
Q ss_pred CCCeEEEEecCCCcHHHHHHHHhhcc
Q 029512 91 DLPEIAFAGRSNVGKSSMLNALTRQW 116 (192)
Q Consensus 91 ~~~~i~lvG~~n~GKStlin~L~~~~ 116 (192)
.+-.++|+|++|+|||||++.|.|-.
T Consensus 415 ~G~~~~ivG~sGsGKSTl~~ll~g~~ 440 (1284)
T 3g5u_A 415 SGQTVALVGNSGCGKSTTVQLMQRLY 440 (1284)
T ss_dssp TTCEEEEECCSSSSHHHHHHHTTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 45589999999999999999999854
No 407
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=95.26 E-value=0.012 Score=45.49 Aligned_cols=22 Identities=18% Similarity=0.315 Sum_probs=19.9
Q ss_pred eEEEEecCCCcHHHHHHHHhhc
Q 029512 94 EIAFAGRSNVGKSSMLNALTRQ 115 (192)
Q Consensus 94 ~i~lvG~~n~GKStlin~L~~~ 115 (192)
+|+|.|.+|+||||+.+.|...
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~ 23 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEK 23 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999999763
No 408
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=95.25 E-value=0.013 Score=45.27 Aligned_cols=24 Identities=17% Similarity=0.353 Sum_probs=21.5
Q ss_pred CCeEEEEecCCCcHHHHHHHHhhc
Q 029512 92 LPEIAFAGRSNVGKSSMLNALTRQ 115 (192)
Q Consensus 92 ~~~i~lvG~~n~GKStlin~L~~~ 115 (192)
...++|.|++|+|||||.+.+...
T Consensus 52 ~~~~ll~G~~G~GKT~la~~l~~~ 75 (242)
T 3bos_A 52 VQAIYLWGPVKSGRTHLIHAACAR 75 (242)
T ss_dssp CSEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH
Confidence 458999999999999999999864
No 409
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=95.25 E-value=0.01 Score=46.11 Aligned_cols=24 Identities=13% Similarity=0.304 Sum_probs=21.3
Q ss_pred CCeEEEEecCCCcHHHHHHHHhhc
Q 029512 92 LPEIAFAGRSNVGKSSMLNALTRQ 115 (192)
Q Consensus 92 ~~~i~lvG~~n~GKStlin~L~~~ 115 (192)
+..|+|+|.+|+||||+.+.|...
T Consensus 5 ~~~I~l~G~~GsGKsT~a~~La~~ 28 (217)
T 3be4_A 5 KHNLILIGAPGSGKGTQCEFIKKE 28 (217)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHH
Confidence 458999999999999999999764
No 410
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=95.24 E-value=0.016 Score=48.64 Aligned_cols=66 Identities=20% Similarity=0.161 Sum_probs=41.9
Q ss_pred CeEEEEecCCCcHHHHHHHHhhccCceeec-C-------CCCceeEEEE-EeeCCeEEEEECCCCCCCCChHHHH
Q 029512 93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTS-D-------KPGLTQTINF-FKLGTKLCLVDLPGYGFAYAKEEVK 158 (192)
Q Consensus 93 ~~i~lvG~~n~GKStlin~L~~~~~~~~~~-~-------~~g~T~~~~~-~~~~~~~~lvDtPG~~~~~~~~~~~ 158 (192)
+.|+|+|+||+|||||...|........++ + ..-.|..+.. ...+.+..++|.--+....+.....
T Consensus 4 ~~i~i~GptgsGKt~la~~La~~~~~~iis~Ds~QvYr~~~igTakp~~~E~~gvphhlid~~~~~e~~s~~~F~ 78 (322)
T 3exa_A 4 KLVAIVGPTAVGKTKTSVMLAKRLNGEVISGDSMQVYRGMDIGTAKITAEEMDGVPHHLIDIKDPSESFSVADFQ 78 (322)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHTTTEEEEECCGGGGBTTCCTTTTCCCHHHHTTCCEESSSCBCTTSCCCHHHHH
T ss_pred cEEEEECCCcCCHHHHHHHHHHhCccceeecCcccceeeeeecCCCCCHHHHcCCCEEEeccCChhhhccHHHHH
Confidence 468899999999999999998764322211 1 1113333321 1236788899988877766654433
No 411
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=95.23 E-value=0.011 Score=48.98 Aligned_cols=24 Identities=29% Similarity=0.447 Sum_probs=21.0
Q ss_pred CCeEEEEecCCCcHHHHHHHHhhc
Q 029512 92 LPEIAFAGRSNVGKSSMLNALTRQ 115 (192)
Q Consensus 92 ~~~i~lvG~~n~GKStlin~L~~~ 115 (192)
.+.+++.|++|+||||+++.|.+.
T Consensus 36 ~~~~ll~Gp~G~GKTtl~~~la~~ 59 (354)
T 1sxj_E 36 LPHLLLYGPNGTGKKTRCMALLES 59 (354)
T ss_dssp CCCEEEECSTTSSHHHHHHTHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH
Confidence 345999999999999999999883
No 412
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=95.22 E-value=0.009 Score=44.64 Aligned_cols=24 Identities=29% Similarity=0.380 Sum_probs=17.2
Q ss_pred CCeEEEEecCCCcHHHHHHHHhhc
Q 029512 92 LPEIAFAGRSNVGKSSMLNALTRQ 115 (192)
Q Consensus 92 ~~~i~lvG~~n~GKStlin~L~~~ 115 (192)
...|+|.|.+|+||||+.+.|...
T Consensus 5 ~~~I~l~G~~GsGKST~a~~La~~ 28 (183)
T 2vli_A 5 SPIIWINGPFGVGKTHTAHTLHER 28 (183)
T ss_dssp CCEEEEECCC----CHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHh
Confidence 457999999999999999999854
No 413
>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12
Probab=95.18 E-value=0.0023 Score=51.10 Aligned_cols=21 Identities=24% Similarity=0.469 Sum_probs=19.0
Q ss_pred EEEEecCCCcHHHHHHHHhhc
Q 029512 95 IAFAGRSNVGKSSMLNALTRQ 115 (192)
Q Consensus 95 i~lvG~~n~GKStlin~L~~~ 115 (192)
++|+|++|+|||||+++|++.
T Consensus 30 ~~i~GpnGsGKSTll~~i~g~ 50 (227)
T 1qhl_A 30 TTLSGGNGAGKSTTMAAFVTA 50 (227)
T ss_dssp HHHHSCCSHHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHhcc
Confidence 468899999999999999975
No 414
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=95.16 E-value=0.01 Score=43.79 Aligned_cols=24 Identities=21% Similarity=0.385 Sum_probs=21.2
Q ss_pred CCeEEEEecCCCcHHHHHHHHhhc
Q 029512 92 LPEIAFAGRSNVGKSSMLNALTRQ 115 (192)
Q Consensus 92 ~~~i~lvG~~n~GKStlin~L~~~ 115 (192)
...++|.|++|+|||++...+...
T Consensus 43 ~~~vll~G~~G~GKT~la~~~~~~ 66 (187)
T 2p65_A 43 KNNPILLGDPGVGKTAIVEGLAIK 66 (187)
T ss_dssp SCEEEEESCGGGCHHHHHHHHHHH
T ss_pred CCceEEECCCCCCHHHHHHHHHHH
Confidence 347899999999999999999865
No 415
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=95.13 E-value=0.016 Score=45.64 Aligned_cols=26 Identities=23% Similarity=0.394 Sum_probs=22.5
Q ss_pred CCCCeEEEEecCCCcHHHHHHHHhhc
Q 029512 90 PDLPEIAFAGRSNVGKSSMLNALTRQ 115 (192)
Q Consensus 90 ~~~~~i~lvG~~n~GKStlin~L~~~ 115 (192)
.....|+|+|.+|+||||+.+.|.+.
T Consensus 14 ~~~~~i~i~G~~gsGKst~~~~l~~~ 39 (236)
T 1q3t_A 14 MKTIQIAIDGPASSGKSTVAKIIAKD 39 (236)
T ss_dssp CCCCEEEEECSSCSSHHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 34568999999999999999999863
No 416
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=95.10 E-value=0.015 Score=44.30 Aligned_cols=23 Identities=26% Similarity=0.457 Sum_probs=21.0
Q ss_pred CeEEEEecCCCcHHHHHHHHhhc
Q 029512 93 PEIAFAGRSNVGKSSMLNALTRQ 115 (192)
Q Consensus 93 ~~i~lvG~~n~GKStlin~L~~~ 115 (192)
..++|.|++|+|||+|..++.+.
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~ 77 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANE 77 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 58999999999999999999864
No 417
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=95.07 E-value=0.014 Score=46.24 Aligned_cols=25 Identities=24% Similarity=0.417 Sum_probs=22.2
Q ss_pred CCCeEEEEecCCCcHHHHHHHHhhc
Q 029512 91 DLPEIAFAGRSNVGKSSMLNALTRQ 115 (192)
Q Consensus 91 ~~~~i~lvG~~n~GKStlin~L~~~ 115 (192)
.+..|++.|.+|+||||+++.|...
T Consensus 25 ~g~~i~i~G~~GsGKsT~~~~l~~~ 49 (229)
T 4eaq_A 25 MSAFITFEGPEGSGKTTVINEVYHR 49 (229)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHH
Confidence 3558999999999999999999875
No 418
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=94.99 E-value=0.018 Score=45.18 Aligned_cols=24 Identities=17% Similarity=0.239 Sum_probs=21.5
Q ss_pred CCeEEEEecCCCcHHHHHHHHhhc
Q 029512 92 LPEIAFAGRSNVGKSSMLNALTRQ 115 (192)
Q Consensus 92 ~~~i~lvG~~n~GKStlin~L~~~ 115 (192)
...|+|+|.+|+||||+.+.|...
T Consensus 16 ~~~I~l~G~~GsGKsT~a~~La~~ 39 (233)
T 1ak2_A 16 GVRAVLLGPPGAGKGTQAPKLAKN 39 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 458999999999999999999864
No 419
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=94.98 E-value=0.022 Score=48.21 Aligned_cols=67 Identities=16% Similarity=0.132 Sum_probs=41.5
Q ss_pred CeEEEEecCCCcHHHHHHHHhhccCceeec-CCC-------CceeEEEE-EeeCCeEEEEECCCC-CCCCChHHHHH
Q 029512 93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTS-DKP-------GLTQTINF-FKLGTKLCLVDLPGY-GFAYAKEEVKD 159 (192)
Q Consensus 93 ~~i~lvG~~n~GKStlin~L~~~~~~~~~~-~~~-------g~T~~~~~-~~~~~~~~lvDtPG~-~~~~~~~~~~~ 159 (192)
+.|+|+|+||+|||||-..|........++ +.. -.|..+.. ...+.+..++|..-+ ....+.....+
T Consensus 41 ~lIvI~GPTgsGKTtLa~~LA~~l~~eiIs~Ds~qvYr~mdIgTakp~~eE~~gvphhlidi~~~~~e~~s~~~F~~ 117 (339)
T 3a8t_A 41 KLLVLMGATGTGKSRLSIDLAAHFPLEVINSDKMQVYKGLDITTNKISVPDRGGVPHHLLGEVDPARGELTPADFRS 117 (339)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTTSCEEEEECCSSTTBSSCTTTTTCCCSGGGTTCCEESSSCBCGGGCCCCHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHCCCcEEcccccccccceeeecCCCCHHHHcCCCEeeccccCcccCccCHHHHHH
Confidence 479999999999999999999764322222 211 13333321 123677788888777 55555444443
No 420
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=94.98 E-value=0.017 Score=46.29 Aligned_cols=24 Identities=33% Similarity=0.415 Sum_probs=21.2
Q ss_pred CCeEEEEecCCCcHHHHHHHHhhc
Q 029512 92 LPEIAFAGRSNVGKSSMLNALTRQ 115 (192)
Q Consensus 92 ~~~i~lvG~~n~GKStlin~L~~~ 115 (192)
...|+|.|++|+||||+.+.|...
T Consensus 9 ~~~i~i~G~~GsGKsTla~~la~~ 32 (233)
T 3r20_A 9 SLVVAVDGPAGTGKSSVSRGLARA 32 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 358999999999999999999853
No 421
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=94.96 E-value=0.078 Score=46.11 Aligned_cols=23 Identities=17% Similarity=0.394 Sum_probs=21.1
Q ss_pred CeEEEEecCCCcHHHHHHHHhhc
Q 029512 93 PEIAFAGRSNVGKSSMLNALTRQ 115 (192)
Q Consensus 93 ~~i~lvG~~n~GKStlin~L~~~ 115 (192)
.-++|.|+||+|||+|.+++++.
T Consensus 207 rGiLL~GPPGtGKT~lakAiA~~ 229 (428)
T 4b4t_K 207 RGVLLYGPPGTGKTMLVKAVANS 229 (428)
T ss_dssp CEEEEESCTTTTHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHH
Confidence 36899999999999999999986
No 422
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=94.95 E-value=0.015 Score=46.24 Aligned_cols=24 Identities=21% Similarity=0.241 Sum_probs=21.3
Q ss_pred CCeEEEEecCCCcHHHHHHHHhhc
Q 029512 92 LPEIAFAGRSNVGKSSMLNALTRQ 115 (192)
Q Consensus 92 ~~~i~lvG~~n~GKStlin~L~~~ 115 (192)
...|+|.|.+|+||||+.+.|...
T Consensus 29 ~~~I~l~G~~GsGKsT~a~~L~~~ 52 (243)
T 3tlx_A 29 DGRYIFLGAPGSGKGTQSLNLKKS 52 (243)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHH
Confidence 458999999999999999999754
No 423
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=94.92 E-value=0.016 Score=45.27 Aligned_cols=22 Identities=23% Similarity=0.311 Sum_probs=19.9
Q ss_pred eEEEEecCCCcHHHHHHHHhhc
Q 029512 94 EIAFAGRSNVGKSSMLNALTRQ 115 (192)
Q Consensus 94 ~i~lvG~~n~GKStlin~L~~~ 115 (192)
.|+|.|.+|+||||+.+.|...
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~ 23 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDK 23 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999999754
No 424
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=94.89 E-value=0.019 Score=46.42 Aligned_cols=23 Identities=22% Similarity=0.107 Sum_probs=20.7
Q ss_pred CCeEEEEecCCCcHHHHHHHHhh
Q 029512 92 LPEIAFAGRSNVGKSSMLNALTR 114 (192)
Q Consensus 92 ~~~i~lvG~~n~GKStlin~L~~ 114 (192)
+-.++|+|++|+|||||+..+++
T Consensus 30 G~i~~i~G~~GsGKTtl~~~l~~ 52 (279)
T 1nlf_A 30 GTVGALVSPGGAGKSMLALQLAA 52 (279)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHH
Confidence 45889999999999999999885
No 425
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=94.88 E-value=0.0093 Score=57.01 Aligned_cols=25 Identities=36% Similarity=0.504 Sum_probs=22.4
Q ss_pred CCCeEEEEecCCCcHHHHHHHHhhc
Q 029512 91 DLPEIAFAGRSNVGKSSMLNALTRQ 115 (192)
Q Consensus 91 ~~~~i~lvG~~n~GKStlin~L~~~ 115 (192)
.+-.++|+|++|+|||||++.|+|.
T Consensus 698 ~GeivaIiGpNGSGKSTLLklLaGl 722 (986)
T 2iw3_A 698 LSSRIAVIGPNGAGKSTLINVLTGE 722 (986)
T ss_dssp TTCEEEECSCCCHHHHHHHHHHTTS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3458999999999999999999986
No 426
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=94.88 E-value=0.027 Score=46.78 Aligned_cols=24 Identities=21% Similarity=0.246 Sum_probs=21.2
Q ss_pred CCeEEEEecCCCcHHHHHHHHhhc
Q 029512 92 LPEIAFAGRSNVGKSSMLNALTRQ 115 (192)
Q Consensus 92 ~~~i~lvG~~n~GKStlin~L~~~ 115 (192)
...++++|++|+||||++..|.+.
T Consensus 104 ~~vi~ivG~~GsGKTTl~~~LA~~ 127 (306)
T 1vma_A 104 PFVIMVVGVNGTGKTTSCGKLAKM 127 (306)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CeEEEEEcCCCChHHHHHHHHHHH
Confidence 447899999999999999999864
No 427
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=94.86 E-value=0.016 Score=55.42 Aligned_cols=24 Identities=21% Similarity=0.433 Sum_probs=21.2
Q ss_pred CCeEEEEecCCCcHHHHHHHHhhc
Q 029512 92 LPEIAFAGRSNVGKSSMLNALTRQ 115 (192)
Q Consensus 92 ~~~i~lvG~~n~GKStlin~L~~~ 115 (192)
+-.++|+|++|+|||||++.|.+.
T Consensus 461 Ge~v~LiGpNGsGKSTLLk~LagG 484 (986)
T 2iw3_A 461 ARRYGICGPNGCGKSTLMRAIANG 484 (986)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 447899999999999999999963
No 428
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=94.86 E-value=0.018 Score=43.81 Aligned_cols=22 Identities=27% Similarity=0.368 Sum_probs=20.3
Q ss_pred eEEEEecCCCcHHHHHHHHhhc
Q 029512 94 EIAFAGRSNVGKSSMLNALTRQ 115 (192)
Q Consensus 94 ~i~lvG~~n~GKStlin~L~~~ 115 (192)
.|+|.|.+|+||||+.+.|...
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~ 25 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAA 25 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHh
Confidence 7999999999999999999864
No 429
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=94.86 E-value=0.016 Score=45.03 Aligned_cols=21 Identities=33% Similarity=0.436 Sum_probs=18.9
Q ss_pred CeEEEEecCCCcHHHHHHHHh
Q 029512 93 PEIAFAGRSNVGKSSMLNALT 113 (192)
Q Consensus 93 ~~i~lvG~~n~GKStlin~L~ 113 (192)
...+|+|++|+||||++.+|.
T Consensus 24 ~~~~I~G~NgsGKStil~ai~ 44 (203)
T 3qks_A 24 GINLIIGQNGSGKSSLLDAIL 44 (203)
T ss_dssp EEEEEECCTTSSHHHHHHHHH
T ss_pred CeEEEEcCCCCCHHHHHHHHH
Confidence 367899999999999999986
No 430
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=94.79 E-value=0.022 Score=43.00 Aligned_cols=22 Identities=32% Similarity=0.561 Sum_probs=19.9
Q ss_pred eEEEEecCCCcHHHHHHHHhhc
Q 029512 94 EIAFAGRSNVGKSSMLNALTRQ 115 (192)
Q Consensus 94 ~i~lvG~~n~GKStlin~L~~~ 115 (192)
.++|.|++|+|||++.+.+...
T Consensus 40 ~~ll~G~~G~GKT~l~~~l~~~ 61 (226)
T 2chg_A 40 HLLFSGPPGTGKTATAIALARD 61 (226)
T ss_dssp CEEEECSTTSSHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 4999999999999999999863
No 431
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=94.78 E-value=0.017 Score=45.96 Aligned_cols=24 Identities=25% Similarity=0.264 Sum_probs=21.3
Q ss_pred CCeEEEEecCCCcHHHHHHHHhhc
Q 029512 92 LPEIAFAGRSNVGKSSMLNALTRQ 115 (192)
Q Consensus 92 ~~~i~lvG~~n~GKStlin~L~~~ 115 (192)
...|+|.|.+|+||||+-+.|...
T Consensus 22 ~~iI~I~G~~GSGKST~a~~L~~~ 45 (252)
T 1uj2_A 22 PFLIGVSGGTASGKSSVCAKIVQL 45 (252)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHH
T ss_pred cEEEEEECCCCCCHHHHHHHHHHH
Confidence 458999999999999999999764
No 432
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=94.78 E-value=0.019 Score=44.89 Aligned_cols=23 Identities=22% Similarity=0.404 Sum_probs=20.5
Q ss_pred eEEEEecCCCcHHHHHHHHhhcc
Q 029512 94 EIAFAGRSNVGKSSMLNALTRQW 116 (192)
Q Consensus 94 ~i~lvG~~n~GKStlin~L~~~~ 116 (192)
.|+++|+||+||+|....|....
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~~ 24 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKEK 24 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 58899999999999999998754
No 433
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=94.77 E-value=0.011 Score=53.04 Aligned_cols=24 Identities=33% Similarity=0.425 Sum_probs=21.8
Q ss_pred CCeEEEEecCCCcHHHHHHHHhhc
Q 029512 92 LPEIAFAGRSNVGKSSMLNALTRQ 115 (192)
Q Consensus 92 ~~~i~lvG~~n~GKStlin~L~~~ 115 (192)
+..++|+|.+|+|||||.+.|.+.
T Consensus 369 G~iI~LiG~sGSGKSTLar~La~~ 392 (552)
T 3cr8_A 369 GFTVFFTGLSGAGKSTLARALAAR 392 (552)
T ss_dssp CEEEEEEESSCHHHHHHHHHHHHH
T ss_pred ceEEEEECCCCChHHHHHHHHHHh
Confidence 458999999999999999999975
No 434
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=94.75 E-value=0.018 Score=47.90 Aligned_cols=23 Identities=30% Similarity=0.488 Sum_probs=21.0
Q ss_pred CeEEEEecCCCcHHHHHHHHhhc
Q 029512 93 PEIAFAGRSNVGKSSMLNALTRQ 115 (192)
Q Consensus 93 ~~i~lvG~~n~GKStlin~L~~~ 115 (192)
+.++|.|++|+|||||++.+.+.
T Consensus 45 ~~~li~G~~G~GKTtl~~~l~~~ 67 (389)
T 1fnn_A 45 PRATLLGRPGTGKTVTLRKLWEL 67 (389)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 47999999999999999999865
No 435
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=94.73 E-value=0.021 Score=42.24 Aligned_cols=25 Identities=24% Similarity=0.347 Sum_probs=21.0
Q ss_pred CCCeEEEEecCCCcHHHHHHHHhhc
Q 029512 91 DLPEIAFAGRSNVGKSSMLNALTRQ 115 (192)
Q Consensus 91 ~~~~i~lvG~~n~GKStlin~L~~~ 115 (192)
.+..|+|.|.+|+||||+.+.|...
T Consensus 6 ~~~~i~l~G~~GsGKSTva~~La~~ 30 (168)
T 1zuh_A 6 HMQHLVLIGFMGSGKSSLAQELGLA 30 (168)
T ss_dssp --CEEEEESCTTSSHHHHHHHHHHH
T ss_pred ccceEEEECCCCCCHHHHHHHHHHH
Confidence 3568999999999999999999764
No 436
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=94.71 E-value=0.019 Score=48.07 Aligned_cols=66 Identities=23% Similarity=0.165 Sum_probs=41.0
Q ss_pred CCeEEEEecCCCcHHHHHHHHhhccCceeec-CC-------CCceeEEEEE-eeCCeEEEEECCCCCCCCChHHH
Q 029512 92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTS-DK-------PGLTQTINFF-KLGTKLCLVDLPGYGFAYAKEEV 157 (192)
Q Consensus 92 ~~~i~lvG~~n~GKStlin~L~~~~~~~~~~-~~-------~g~T~~~~~~-~~~~~~~lvDtPG~~~~~~~~~~ 157 (192)
.+.|+|+|+||+|||||...|........++ +. .-.|..+... ..+.+..++|.--+....+....
T Consensus 10 ~~~i~i~GptgsGKt~la~~La~~~~~~iis~Ds~qvY~~~~igTakp~~~E~~~v~hhlid~~~~~e~~s~~~f 84 (316)
T 3foz_A 10 PKAIFLMGPTASGKTALAIELRKILPVELISVDSALIYKGMDIGTAKPNAEELLAAPHRLLDIRDPSQAYSAADF 84 (316)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHSCEEEEECCTTTTBTTCCTTTTCCCHHHHHHSCEETSSCBCTTSCCCHHHH
T ss_pred CcEEEEECCCccCHHHHHHHHHHhCCCcEEecccccccccccccCCCCCHHHHcCCCEEEeccCCccccccHHHH
Confidence 3468899999999999999999764322222 11 1133333211 13567788888777666555443
No 437
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=94.70 E-value=0.021 Score=47.39 Aligned_cols=23 Identities=39% Similarity=0.693 Sum_probs=20.7
Q ss_pred CeEEEEecCCCcHHHHHHHHhhc
Q 029512 93 PEIAFAGRSNVGKSSMLNALTRQ 115 (192)
Q Consensus 93 ~~i~lvG~~n~GKStlin~L~~~ 115 (192)
+.+++.|++|+||||+++++.+.
T Consensus 47 ~~~ll~Gp~G~GKTtla~~la~~ 69 (340)
T 1sxj_C 47 PHLLFYGPPGTGKTSTIVALARE 69 (340)
T ss_dssp CCEEEECSSSSSHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHH
Confidence 45899999999999999999875
No 438
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=94.66 E-value=0.023 Score=45.96 Aligned_cols=25 Identities=16% Similarity=0.260 Sum_probs=22.1
Q ss_pred CCeEEEEecCCCcHHHHHHHHhhcc
Q 029512 92 LPEIAFAGRSNVGKSSMLNALTRQW 116 (192)
Q Consensus 92 ~~~i~lvG~~n~GKStlin~L~~~~ 116 (192)
...++|.|+||+|||++.+++.+..
T Consensus 54 ~~~vll~Gp~GtGKT~la~~la~~~ 78 (297)
T 3b9p_A 54 AKGLLLFGPPGNGKTLLARAVATEC 78 (297)
T ss_dssp CSEEEEESSSSSCHHHHHHHHHHHT
T ss_pred CCeEEEECcCCCCHHHHHHHHHHHh
Confidence 4589999999999999999999753
No 439
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=94.65 E-value=0.018 Score=56.52 Aligned_cols=26 Identities=31% Similarity=0.496 Sum_probs=22.8
Q ss_pred CCCeEEEEecCCCcHHHHHHHHhhcc
Q 029512 91 DLPEIAFAGRSNVGKSSMLNALTRQW 116 (192)
Q Consensus 91 ~~~~i~lvG~~n~GKStlin~L~~~~ 116 (192)
.+-.++|+|++|+|||||++.|+|-.
T Consensus 1058 ~Ge~v~ivG~sGsGKSTl~~~l~g~~ 1083 (1284)
T 3g5u_A 1058 KGQTLALVGSSGCGKSTVVQLLERFY 1083 (1284)
T ss_dssp SSSEEEEECSSSTTHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCc
Confidence 34589999999999999999999853
No 440
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=94.63 E-value=0.023 Score=47.04 Aligned_cols=24 Identities=17% Similarity=0.288 Sum_probs=21.4
Q ss_pred CCeEEEEecCCCcHHHHHHHHhhc
Q 029512 92 LPEIAFAGRSNVGKSSMLNALTRQ 115 (192)
Q Consensus 92 ~~~i~lvG~~n~GKStlin~L~~~ 115 (192)
...++|.|++|+|||||++.+.+.
T Consensus 45 ~~~vli~G~~G~GKTtl~~~l~~~ 68 (386)
T 2qby_A 45 PNNIFIYGLTGTGKTAVVKFVLSK 68 (386)
T ss_dssp CCCEEEEECTTSSHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH
Confidence 447899999999999999999874
No 441
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=94.60 E-value=0.013 Score=53.58 Aligned_cols=21 Identities=33% Similarity=0.493 Sum_probs=18.4
Q ss_pred CeEEEEecCCCcHHHHHHHHh
Q 029512 93 PEIAFAGRSNVGKSSMLNALT 113 (192)
Q Consensus 93 ~~i~lvG~~n~GKStlin~L~ 113 (192)
-.++|+|++|+|||||+|.++
T Consensus 349 e~vaIiGpnGsGKSTLl~~i~ 369 (670)
T 3ux8_A 349 TFVAVTGVSGSGKSTLVNEVL 369 (670)
T ss_dssp SEEEEECSTTSSHHHHHTTTH
T ss_pred CEEEEEeeCCCCHHHHHHHHH
Confidence 367999999999999998764
No 442
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=94.56 E-value=0.023 Score=46.28 Aligned_cols=23 Identities=35% Similarity=0.433 Sum_probs=20.6
Q ss_pred CCeEEEEecCCCcHHHHHHHHhh
Q 029512 92 LPEIAFAGRSNVGKSSMLNALTR 114 (192)
Q Consensus 92 ~~~i~lvG~~n~GKStlin~L~~ 114 (192)
...|+|+|.+|+||||+.+.|..
T Consensus 75 ~~iI~I~G~~GSGKSTva~~La~ 97 (281)
T 2f6r_A 75 LYVLGLTGISGSGKSSVAQRLKN 97 (281)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHH
Confidence 45799999999999999999984
No 443
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=94.56 E-value=0.025 Score=45.34 Aligned_cols=25 Identities=20% Similarity=0.266 Sum_probs=21.8
Q ss_pred CCeEEEEecCCCcHHHHHHHHhhcc
Q 029512 92 LPEIAFAGRSNVGKSSMLNALTRQW 116 (192)
Q Consensus 92 ~~~i~lvG~~n~GKStlin~L~~~~ 116 (192)
...++|.|++|+|||+|.+++.+..
T Consensus 51 ~~~~ll~G~~GtGKT~la~~la~~~ 75 (285)
T 3h4m_A 51 PKGILLYGPPGTGKTLLAKAVATET 75 (285)
T ss_dssp CSEEEEESSSSSSHHHHHHHHHHHT
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHh
Confidence 4479999999999999999998753
No 444
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=94.55 E-value=0.03 Score=45.41 Aligned_cols=25 Identities=16% Similarity=0.343 Sum_probs=21.4
Q ss_pred CCCeEEEEecCCCcHHHHHHHHhhc
Q 029512 91 DLPEIAFAGRSNVGKSSMLNALTRQ 115 (192)
Q Consensus 91 ~~~~i~lvG~~n~GKStlin~L~~~ 115 (192)
....++|.|+||+|||++.+++...
T Consensus 66 ~~~~vll~G~~GtGKT~la~~la~~ 90 (309)
T 3syl_A 66 PTLHMSFTGNPGTGKTTVALKMAGL 90 (309)
T ss_dssp CCCEEEEEECTTSSHHHHHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHHHHH
Confidence 4557999999999999999887754
No 445
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=94.53 E-value=0.029 Score=44.30 Aligned_cols=24 Identities=21% Similarity=0.332 Sum_probs=20.5
Q ss_pred CeEEEEecCCCcHHHHHHHHhhcc
Q 029512 93 PEIAFAGRSNVGKSSMLNALTRQW 116 (192)
Q Consensus 93 ~~i~lvG~~n~GKStlin~L~~~~ 116 (192)
..|+|+|+||+||+|....|....
T Consensus 30 kiI~llGpPGsGKgTqa~~L~~~~ 53 (217)
T 3umf_A 30 KVIFVLGGPGSGKGTQCEKLVQKF 53 (217)
T ss_dssp EEEEEECCTTCCHHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHH
Confidence 366789999999999999998654
No 446
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=94.49 E-value=0.028 Score=44.25 Aligned_cols=24 Identities=17% Similarity=0.272 Sum_probs=21.3
Q ss_pred CCeEEEEecCCCcHHHHHHHHhhc
Q 029512 92 LPEIAFAGRSNVGKSSMLNALTRQ 115 (192)
Q Consensus 92 ~~~i~lvG~~n~GKStlin~L~~~ 115 (192)
...++|.|++|+|||++.+++.+.
T Consensus 39 ~~~vll~G~~GtGKT~la~~la~~ 62 (262)
T 2qz4_A 39 PKGALLLGPPGCGKTLLAKAVATE 62 (262)
T ss_dssp CCEEEEESCTTSSHHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHH
Confidence 457899999999999999999875
No 447
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12
Probab=94.47 E-value=0.026 Score=48.66 Aligned_cols=24 Identities=25% Similarity=0.335 Sum_probs=21.2
Q ss_pred CCeEEEEecCCCcHHHHHHHHhhc
Q 029512 92 LPEIAFAGRSNVGKSSMLNALTRQ 115 (192)
Q Consensus 92 ~~~i~lvG~~n~GKStlin~L~~~ 115 (192)
...++|+|++|+|||||+++|.+.
T Consensus 26 ~~~~~i~G~nG~GKstll~ai~~~ 49 (430)
T 1w1w_A 26 SNFTSIIGPNGSGKSNMMDAISFV 49 (430)
T ss_dssp CSEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHhh
Confidence 347899999999999999999864
No 448
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=94.46 E-value=0.022 Score=43.40 Aligned_cols=23 Identities=30% Similarity=0.512 Sum_probs=20.5
Q ss_pred CeEEEEecCCCcHHHHHHHHhhc
Q 029512 93 PEIAFAGRSNVGKSSMLNALTRQ 115 (192)
Q Consensus 93 ~~i~lvG~~n~GKStlin~L~~~ 115 (192)
..++|.|++|+|||||+..+...
T Consensus 46 ~~~ll~G~~G~GKT~l~~~~~~~ 68 (250)
T 1njg_A 46 HAYLFSGTRGVGKTSIARLLAKG 68 (250)
T ss_dssp SEEEEECSTTSCHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 36899999999999999999864
No 449
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=94.46 E-value=0.018 Score=48.38 Aligned_cols=65 Identities=22% Similarity=0.177 Sum_probs=37.7
Q ss_pred CeEEEEecCCCcHHHHHHHHhhccCceeec-CC-------CCceeEEE-EEeeCCeEEEEECCCCCCCCChHHH
Q 029512 93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTS-DK-------PGLTQTIN-FFKLGTKLCLVDLPGYGFAYAKEEV 157 (192)
Q Consensus 93 ~~i~lvG~~n~GKStlin~L~~~~~~~~~~-~~-------~g~T~~~~-~~~~~~~~~lvDtPG~~~~~~~~~~ 157 (192)
..|+|+|+||+|||||-..|.........+ +. ...|..+. ....+.+..++|..-+....+....
T Consensus 6 ~~i~i~GptGsGKTtla~~La~~l~~~iis~Ds~qvy~~~~igTakp~~~e~~gvph~lid~~~~~~~~~~~~F 79 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALADALPCELISVDSALIYRGMDIGTAKPSRELLARYPHRLIDIRDPAESYSAAEF 79 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHSCEEEEEECTTTTBTTCCTTTTCCCHHHHHHSCEETSSCBCTTSCCCHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcCCcEEeccchhhhcCCCcccCCCCHHHHcCCCEEEeeccCcccccCHHHH
Confidence 378999999999999999999764222221 11 11222211 1112556677777766554444443
No 450
>1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2
Probab=94.45 E-value=0.029 Score=46.92 Aligned_cols=24 Identities=25% Similarity=0.328 Sum_probs=22.0
Q ss_pred CCeEEEEecCCCcHHHHHHHHhhc
Q 029512 92 LPEIAFAGRSNVGKSSMLNALTRQ 115 (192)
Q Consensus 92 ~~~i~lvG~~n~GKStlin~L~~~ 115 (192)
+.-+++.|.+|+||||+.+.|.+.
T Consensus 144 g~~vl~~G~sG~GKSt~a~~l~~~ 167 (314)
T 1ko7_A 144 GVGVLITGDSGIGKSETALELIKR 167 (314)
T ss_dssp TEEEEEEESTTSSHHHHHHHHHHT
T ss_pred CEEEEEEeCCCCCHHHHHHHHHhc
Confidence 457999999999999999999986
No 451
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=94.44 E-value=0.054 Score=45.17 Aligned_cols=25 Identities=20% Similarity=0.336 Sum_probs=21.4
Q ss_pred CCCeEEEEecCCCcHHHHHHHHhhc
Q 029512 91 DLPEIAFAGRSNVGKSSMLNALTRQ 115 (192)
Q Consensus 91 ~~~~i~lvG~~n~GKStlin~L~~~ 115 (192)
....++++|.+|+||||++..|.+.
T Consensus 104 ~~~vI~ivG~~G~GKTT~~~~LA~~ 128 (320)
T 1zu4_A 104 RLNIFMLVGVNGTGKTTSLAKMANY 128 (320)
T ss_dssp SCEEEEEESSTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 3457899999999999999999853
No 452
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=94.37 E-value=0.029 Score=45.89 Aligned_cols=25 Identities=20% Similarity=0.376 Sum_probs=21.9
Q ss_pred CCeEEEEecCCCcHHHHHHHHhhcc
Q 029512 92 LPEIAFAGRSNVGKSSMLNALTRQW 116 (192)
Q Consensus 92 ~~~i~lvG~~n~GKStlin~L~~~~ 116 (192)
...++|.|++|+|||+|.+++.+..
T Consensus 49 ~~~vLL~Gp~GtGKT~la~ala~~~ 73 (301)
T 3cf0_A 49 SKGVLFYGPPGCGKTLLAKAIANEC 73 (301)
T ss_dssp CSEEEEECSSSSSHHHHHHHHHHHT
T ss_pred CceEEEECCCCcCHHHHHHHHHHHh
Confidence 3478999999999999999999753
No 453
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=94.33 E-value=0.12 Score=44.55 Aligned_cols=24 Identities=17% Similarity=0.299 Sum_probs=21.4
Q ss_pred CeEEEEecCCCcHHHHHHHHhhcc
Q 029512 93 PEIAFAGRSNVGKSSMLNALTRQW 116 (192)
Q Consensus 93 ~~i~lvG~~n~GKStlin~L~~~~ 116 (192)
.-|+|.|+||+|||+|..++++..
T Consensus 183 rGvLL~GPPGTGKTllAkAiA~e~ 206 (405)
T 4b4t_J 183 KGVILYGPPGTGKTLLARAVAHHT 206 (405)
T ss_dssp CCEEEESCSSSSHHHHHHHHHHHH
T ss_pred CceEEeCCCCCCHHHHHHHHHHhh
Confidence 368999999999999999999863
No 454
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=94.31 E-value=0.025 Score=46.48 Aligned_cols=24 Identities=25% Similarity=0.357 Sum_probs=21.4
Q ss_pred CCeEEEEecCCCcHHHHHHHHhhc
Q 029512 92 LPEIAFAGRSNVGKSSMLNALTRQ 115 (192)
Q Consensus 92 ~~~i~lvG~~n~GKStlin~L~~~ 115 (192)
...++|.|++|+|||||++++.+.
T Consensus 37 ~~~lll~G~~GtGKT~la~~i~~~ 60 (324)
T 1l8q_A 37 YNPIFIYGSVGTGKTHLLQAAGNE 60 (324)
T ss_dssp CSSEEEECSSSSSHHHHHHHHHHH
T ss_pred CCeEEEECCCCCcHHHHHHHHHHH
Confidence 457899999999999999999874
No 455
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=94.30 E-value=0.027 Score=47.80 Aligned_cols=25 Identities=16% Similarity=0.142 Sum_probs=22.0
Q ss_pred CCCeEEEEecCCCcHHHHHHHHhhc
Q 029512 91 DLPEIAFAGRSNVGKSSMLNALTRQ 115 (192)
Q Consensus 91 ~~~~i~lvG~~n~GKStlin~L~~~ 115 (192)
..+.++++|.+|+||||+++.|+..
T Consensus 34 ~~~~~~i~G~~G~GKs~~~~~~~~~ 58 (392)
T 4ag6_A 34 TNSNWTILAKPGAGKSFTAKMLLLR 58 (392)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHH
T ss_pred ccCceEEEcCCCCCHHHHHHHHHHH
Confidence 3568899999999999999999864
No 456
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=94.28 E-value=0.026 Score=45.75 Aligned_cols=22 Identities=23% Similarity=0.232 Sum_probs=20.1
Q ss_pred eEEEEecCCCcHHHHHHHHhhc
Q 029512 94 EIAFAGRSNVGKSSMLNALTRQ 115 (192)
Q Consensus 94 ~i~lvG~~n~GKStlin~L~~~ 115 (192)
.|+++|.+|+||||+.+.|...
T Consensus 4 ~I~l~G~~GsGKST~a~~L~~~ 25 (301)
T 1ltq_A 4 IILTIGCPGSGKSTWAREFIAK 25 (301)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHh
Confidence 6899999999999999999863
No 457
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=94.26 E-value=0.044 Score=47.17 Aligned_cols=25 Identities=16% Similarity=0.143 Sum_probs=21.8
Q ss_pred CCeEEEEecCCCcHHHHHHHHhhcc
Q 029512 92 LPEIAFAGRSNVGKSSMLNALTRQW 116 (192)
Q Consensus 92 ~~~i~lvG~~n~GKStlin~L~~~~ 116 (192)
...|+++|.+|+||||+.+.|....
T Consensus 258 ~~lIil~G~pGSGKSTla~~L~~~~ 282 (416)
T 3zvl_A 258 PEVVVAVGFPGAGKSTFIQEHLVSA 282 (416)
T ss_dssp CCEEEEESCTTSSHHHHHHHHTGGG
T ss_pred CEEEEEECCCCCCHHHHHHHHHHhc
Confidence 4578899999999999999998753
No 458
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=94.24 E-value=0.053 Score=43.83 Aligned_cols=23 Identities=26% Similarity=0.489 Sum_probs=20.7
Q ss_pred CeEEEEecCCCcHHHHHHHHhhc
Q 029512 93 PEIAFAGRSNVGKSSMLNALTRQ 115 (192)
Q Consensus 93 ~~i~lvG~~n~GKStlin~L~~~ 115 (192)
..++|+|++|+|||++.++|.+.
T Consensus 48 ~~~ll~G~~GtGKt~la~~la~~ 70 (311)
T 4fcw_A 48 GSFLFLGPTGVGKTELAKTLAAT 70 (311)
T ss_dssp EEEEEESCSSSSHHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHHH
Confidence 37899999999999999999864
No 459
>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12
Probab=94.23 E-value=0.019 Score=47.65 Aligned_cols=21 Identities=29% Similarity=0.495 Sum_probs=19.6
Q ss_pred eEEEEecCCCcHHHHHHHHhh
Q 029512 94 EIAFAGRSNVGKSSMLNALTR 114 (192)
Q Consensus 94 ~i~lvG~~n~GKStlin~L~~ 114 (192)
..+|+|++|+|||||+.+|..
T Consensus 26 ~~~i~G~NGsGKS~ll~ai~~ 46 (322)
T 1e69_A 26 VTAIVGPNGSGKSNIIDAIKW 46 (322)
T ss_dssp EEEEECCTTTCSTHHHHHHHH
T ss_pred cEEEECCCCCcHHHHHHHHHH
Confidence 789999999999999999983
No 460
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=94.15 E-value=0.031 Score=49.47 Aligned_cols=21 Identities=19% Similarity=0.177 Sum_probs=18.9
Q ss_pred CCeEEEEecCCCcHHHHHHHH
Q 029512 92 LPEIAFAGRSNVGKSSMLNAL 112 (192)
Q Consensus 92 ~~~i~lvG~~n~GKStlin~L 112 (192)
+-.++|+|++|+|||||++.+
T Consensus 39 Ge~~~l~G~nGsGKSTL~~~~ 59 (525)
T 1tf7_A 39 GRSTLVSGTSGTGKTLFSIQF 59 (525)
T ss_dssp TSEEEEEESTTSSHHHHHHHH
T ss_pred CeEEEEEcCCCCCHHHHHHHH
Confidence 458999999999999999994
No 461
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=94.15 E-value=0.03 Score=50.01 Aligned_cols=25 Identities=28% Similarity=0.559 Sum_probs=22.4
Q ss_pred CCCeEEEEecCCCcHHHHHHHHhhc
Q 029512 91 DLPEIAFAGRSNVGKSSMLNALTRQ 115 (192)
Q Consensus 91 ~~~~i~lvG~~n~GKStlin~L~~~ 115 (192)
....++|+|+||+|||||.++|.+.
T Consensus 107 ~g~~vll~Gp~GtGKTtlar~ia~~ 131 (543)
T 3m6a_A 107 KGPILCLAGPPGVGKTSLAKSIAKS 131 (543)
T ss_dssp CSCEEEEESSSSSSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHh
Confidence 4668999999999999999999875
No 462
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=94.12 E-value=0.032 Score=43.07 Aligned_cols=24 Identities=25% Similarity=0.369 Sum_probs=21.4
Q ss_pred CCeEEEEecCCCcHHHHHHHHhhc
Q 029512 92 LPEIAFAGRSNVGKSSMLNALTRQ 115 (192)
Q Consensus 92 ~~~i~lvG~~n~GKStlin~L~~~ 115 (192)
...|+|+|.+|+||||+.+.|...
T Consensus 12 ~~iIgltG~~GSGKSTva~~L~~~ 35 (192)
T 2grj_A 12 HMVIGVTGKIGTGKSTVCEILKNK 35 (192)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHh
Confidence 458999999999999999999864
No 463
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=94.12 E-value=0.03 Score=47.18 Aligned_cols=25 Identities=16% Similarity=0.179 Sum_probs=21.8
Q ss_pred CCCeEEEEecCCCcHHHHHHHHhhc
Q 029512 91 DLPEIAFAGRSNVGKSSMLNALTRQ 115 (192)
Q Consensus 91 ~~~~i~lvG~~n~GKStlin~L~~~ 115 (192)
.+-.+.|+|++|+|||||++.|++.
T Consensus 130 ~G~i~~I~G~~GsGKTTL~~~l~~~ 154 (349)
T 1pzn_A 130 TQAITEVFGEFGSGKTQLAHTLAVM 154 (349)
T ss_dssp SSEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 3448899999999999999999875
No 464
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Probab=94.10 E-value=0.027 Score=47.03 Aligned_cols=21 Identities=33% Similarity=0.430 Sum_probs=18.6
Q ss_pred eEEEEecCCCcHHHHHHHHhh
Q 029512 94 EIAFAGRSNVGKSSMLNALTR 114 (192)
Q Consensus 94 ~i~lvG~~n~GKStlin~L~~ 114 (192)
..+|+|++|+||||++.+|+.
T Consensus 25 ~~~i~G~NGsGKS~lleAi~~ 45 (339)
T 3qkt_A 25 INLIIGQNGSGKSSLLDAILV 45 (339)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 668999999999999999853
No 465
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=94.08 E-value=0.04 Score=40.04 Aligned_cols=24 Identities=13% Similarity=0.070 Sum_probs=21.2
Q ss_pred CCeEEEEecCCCcHHHHHHHHhhc
Q 029512 92 LPEIAFAGRSNVGKSSMLNALTRQ 115 (192)
Q Consensus 92 ~~~i~lvG~~n~GKStlin~L~~~ 115 (192)
...|+|.|++|+|||++..+|...
T Consensus 24 ~~~vll~G~~GtGKt~lA~~i~~~ 47 (145)
T 3n70_A 24 DIAVWLYGAPGTGRMTGARYLHQF 47 (145)
T ss_dssp CSCEEEESSTTSSHHHHHHHHHHS
T ss_pred CCCEEEECCCCCCHHHHHHHHHHh
Confidence 346899999999999999999875
No 466
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=94.00 E-value=0.042 Score=45.19 Aligned_cols=23 Identities=39% Similarity=0.676 Sum_probs=20.5
Q ss_pred CeEEEEecCCCcHHHHHHHHhhc
Q 029512 93 PEIAFAGRSNVGKSSMLNALTRQ 115 (192)
Q Consensus 93 ~~i~lvG~~n~GKStlin~L~~~ 115 (192)
+.++|.|++|+||||+.+++.+.
T Consensus 59 ~~~ll~G~~G~GKT~la~~la~~ 81 (353)
T 1sxj_D 59 PHMLFYGPPGTGKTSTILALTKE 81 (353)
T ss_dssp CCEEEECSTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHH
Confidence 34999999999999999999865
No 467
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=93.98 E-value=0.03 Score=49.90 Aligned_cols=25 Identities=28% Similarity=0.465 Sum_probs=22.3
Q ss_pred CCCeEEEEecCCCcHHHHHHHHhhc
Q 029512 91 DLPEIAFAGRSNVGKSSMLNALTRQ 115 (192)
Q Consensus 91 ~~~~i~lvG~~n~GKStlin~L~~~ 115 (192)
..+.++++|.||+|||+++|+|...
T Consensus 166 ~~pHlLIaG~TGSGKSt~L~~li~s 190 (512)
T 2ius_A 166 KMPHLLVAGTTGSGASVGVNAMILS 190 (512)
T ss_dssp GSCSEEEECCTTSSHHHHHHHHHHH
T ss_pred cCceEEEECCCCCCHHHHHHHHHHH
Confidence 3679999999999999999999863
No 468
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=93.93 E-value=0.043 Score=44.83 Aligned_cols=23 Identities=22% Similarity=0.183 Sum_probs=19.9
Q ss_pred CeEEEEecCCCcHHHHHHHHhhc
Q 029512 93 PEIAFAGRSNVGKSSMLNALTRQ 115 (192)
Q Consensus 93 ~~i~lvG~~n~GKStlin~L~~~ 115 (192)
.-++|.|+||+|||+|..++...
T Consensus 37 ~~lLl~GppGtGKT~la~aiA~~ 59 (293)
T 3t15_A 37 LILGIWGGKGQGKSFQCELVFRK 59 (293)
T ss_dssp SEEEEEECTTSCHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 35677799999999999999965
No 469
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=93.91 E-value=0.045 Score=45.20 Aligned_cols=24 Identities=25% Similarity=0.425 Sum_probs=21.3
Q ss_pred CCeEEEEecCCCcHHHHHHHHhhc
Q 029512 92 LPEIAFAGRSNVGKSSMLNALTRQ 115 (192)
Q Consensus 92 ~~~i~lvG~~n~GKStlin~L~~~ 115 (192)
...+.|.|++|+|||+|.++|...
T Consensus 152 ~~~lll~G~~GtGKT~La~aia~~ 175 (308)
T 2qgz_A 152 QKGLYLYGDMGIGKSYLLAAMAHE 175 (308)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHH
Confidence 468999999999999999999864
No 470
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=93.91 E-value=0.2 Score=44.05 Aligned_cols=25 Identities=20% Similarity=0.214 Sum_probs=22.0
Q ss_pred CCeEEEEecCCCcHHHHHHHHhhcc
Q 029512 92 LPEIAFAGRSNVGKSSMLNALTRQW 116 (192)
Q Consensus 92 ~~~i~lvG~~n~GKStlin~L~~~~ 116 (192)
..-|+|.|+||+|||+|.+++++..
T Consensus 243 prGILLyGPPGTGKTlLAkAiA~e~ 267 (467)
T 4b4t_H 243 PKGILLYGPPGTGKTLCARAVANRT 267 (467)
T ss_dssp CSEEEECSCTTSSHHHHHHHHHHHH
T ss_pred CCceEeeCCCCCcHHHHHHHHHhcc
Confidence 3478999999999999999999863
No 471
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=93.90 E-value=0.048 Score=41.97 Aligned_cols=24 Identities=29% Similarity=0.419 Sum_probs=21.2
Q ss_pred CCeEEEEecCCCcHHHHHHHHhhc
Q 029512 92 LPEIAFAGRSNVGKSSMLNALTRQ 115 (192)
Q Consensus 92 ~~~i~lvG~~n~GKStlin~L~~~ 115 (192)
..-|++.|+||+|||||.-.|...
T Consensus 16 G~gvli~G~SGaGKStlal~L~~r 39 (181)
T 3tqf_A 16 KMGVLITGEANIGKSELSLALIDR 39 (181)
T ss_dssp TEEEEEEESSSSSHHHHHHHHHHT
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHc
Confidence 446899999999999999999876
No 472
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=93.90 E-value=0.033 Score=43.76 Aligned_cols=25 Identities=28% Similarity=0.251 Sum_probs=21.9
Q ss_pred CCeEEEEecCCCcHHHHHHHHhhcc
Q 029512 92 LPEIAFAGRSNVGKSSMLNALTRQW 116 (192)
Q Consensus 92 ~~~i~lvG~~n~GKStlin~L~~~~ 116 (192)
...|+|+|+||+|||||...|....
T Consensus 34 g~~ilI~GpsGsGKStLA~~La~~g 58 (205)
T 2qmh_A 34 GLGVLITGDSGVGKSETALELVQRG 58 (205)
T ss_dssp TEEEEEECCCTTTTHHHHHHHHTTT
T ss_pred CEEEEEECCCCCCHHHHHHHHHHhC
Confidence 4478999999999999999999763
No 473
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=93.89 E-value=0.044 Score=42.59 Aligned_cols=22 Identities=14% Similarity=0.253 Sum_probs=18.5
Q ss_pred CCeEEEEecCCCcHHHHHHHHh
Q 029512 92 LPEIAFAGRSNVGKSSMLNALT 113 (192)
Q Consensus 92 ~~~i~lvG~~n~GKStlin~L~ 113 (192)
+-.++++|++|+|||||...++
T Consensus 23 G~~~~i~G~~GsGKTtl~~~~~ 44 (247)
T 2dr3_A 23 RNVVLLSGGPGTGKTIFSQQFL 44 (247)
T ss_dssp TCEEEEEECTTSSHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHH
Confidence 4478999999999999976665
No 474
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=93.88 E-value=0.03 Score=44.25 Aligned_cols=22 Identities=27% Similarity=0.359 Sum_probs=19.8
Q ss_pred eEEEEecCCCcHHHHHHHHhhc
Q 029512 94 EIAFAGRSNVGKSSMLNALTRQ 115 (192)
Q Consensus 94 ~i~lvG~~n~GKStlin~L~~~ 115 (192)
.+++.|+||+||||+..+|...
T Consensus 60 ~ili~GPPGtGKTt~a~ala~~ 81 (212)
T 1tue_A 60 CLVFCGPANTGKSYFGMSFIHF 81 (212)
T ss_dssp EEEEESCGGGCHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6999999999999998888864
No 475
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=93.84 E-value=0.041 Score=44.28 Aligned_cols=24 Identities=25% Similarity=0.429 Sum_probs=21.1
Q ss_pred CCeEEEEecCCCcHHHHHHHHhhc
Q 029512 92 LPEIAFAGRSNVGKSSMLNALTRQ 115 (192)
Q Consensus 92 ~~~i~lvG~~n~GKStlin~L~~~ 115 (192)
...+++.|+||+|||++.+++...
T Consensus 50 ~~~vll~G~~GtGKT~la~~la~~ 73 (310)
T 1ofh_A 50 PKNILMIGPTGVGKTEIARRLAKL 73 (310)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHH
Confidence 357899999999999999999864
No 476
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=93.81 E-value=0.037 Score=45.84 Aligned_cols=24 Identities=17% Similarity=0.303 Sum_probs=21.4
Q ss_pred CCeEEEEecCCCcHHHHHHHHhhc
Q 029512 92 LPEIAFAGRSNVGKSSMLNALTRQ 115 (192)
Q Consensus 92 ~~~i~lvG~~n~GKStlin~L~~~ 115 (192)
...++|.|++|+|||||++.+...
T Consensus 44 ~~~vll~G~~G~GKT~l~~~~~~~ 67 (387)
T 2v1u_A 44 PSNALLYGLTGTGKTAVARLVLRR 67 (387)
T ss_dssp CCCEEECBCTTSSHHHHHHHHHHH
T ss_pred CCcEEEECCCCCCHHHHHHHHHHH
Confidence 458999999999999999999864
No 477
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=93.77 E-value=0.023 Score=46.63 Aligned_cols=24 Identities=25% Similarity=0.434 Sum_probs=18.2
Q ss_pred CCeEEEEecCCCcHHHHHHHHhhc
Q 029512 92 LPEIAFAGRSNVGKSSMLNALTRQ 115 (192)
Q Consensus 92 ~~~i~lvG~~n~GKStlin~L~~~ 115 (192)
.+.|+|.|.+|+||||+.+.|...
T Consensus 5 ~~iIgItG~sGSGKSTva~~L~~~ 28 (290)
T 1a7j_A 5 HPIISVTGSSGAGTSTVKHTFDQI 28 (290)
T ss_dssp SCEEEEESCC---CCTHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHH
Confidence 458999999999999999999763
No 478
>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}
Probab=93.74 E-value=0.037 Score=46.98 Aligned_cols=21 Identities=24% Similarity=0.354 Sum_probs=19.8
Q ss_pred eEEEEecCCCcHHHHHHHHhh
Q 029512 94 EIAFAGRSNVGKSSMLNALTR 114 (192)
Q Consensus 94 ~i~lvG~~n~GKStlin~L~~ 114 (192)
.++|+|++|+||||++++|.+
T Consensus 28 ~~~i~G~nG~GKttll~ai~~ 48 (359)
T 2o5v_A 28 VTGIYGENGAGKTNLLEAAYL 48 (359)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCChhHHHHHHHH
Confidence 789999999999999999985
No 479
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=93.72 E-value=0.046 Score=46.50 Aligned_cols=25 Identities=20% Similarity=0.263 Sum_probs=21.6
Q ss_pred CCCeEEEEecCCCcHHHHHHHHhhc
Q 029512 91 DLPEIAFAGRSNVGKSSMLNALTRQ 115 (192)
Q Consensus 91 ~~~~i~lvG~~n~GKStlin~L~~~ 115 (192)
..+.|+|+|++|+||||+...|.+.
T Consensus 23 ~~~~i~l~G~~G~GKTTl~~~la~~ 47 (359)
T 2ga8_A 23 YRVCVILVGSPGSGKSTIAEELCQI 47 (359)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CeeEEEEECCCCCcHHHHHHHHHHH
Confidence 3457999999999999999988864
No 480
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=93.72 E-value=0.041 Score=43.31 Aligned_cols=24 Identities=29% Similarity=0.589 Sum_probs=21.3
Q ss_pred CeEEEEecCCCcHHHHHHHHhhcc
Q 029512 93 PEIAFAGRSNVGKSSMLNALTRQW 116 (192)
Q Consensus 93 ~~i~lvG~~n~GKStlin~L~~~~ 116 (192)
..|++.|.+|+||||+.+.|....
T Consensus 3 ~~i~~~G~~g~GKtt~~~~l~~~l 26 (241)
T 2ocp_A 3 RRLSIEGNIAVGKSTFVKLLTKTY 26 (241)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHC
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHc
Confidence 468999999999999999998753
No 481
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=93.70 E-value=0.025 Score=45.25 Aligned_cols=25 Identities=28% Similarity=0.508 Sum_probs=22.1
Q ss_pred CCCeEEEEecCCCcHHHHHHHHhhc
Q 029512 91 DLPEIAFAGRSNVGKSSMLNALTRQ 115 (192)
Q Consensus 91 ~~~~i~lvG~~n~GKStlin~L~~~ 115 (192)
....|+|.|.+|+||||+.+.|...
T Consensus 23 ~~~~I~ieG~~GsGKST~~~~L~~~ 47 (263)
T 1p5z_B 23 RIKKISIEGNIAAGKSTFVNILKQL 47 (263)
T ss_dssp CCEEEEEECSTTSSHHHHHTTTGGG
T ss_pred CceEEEEECCCCCCHHHHHHHHHHh
Confidence 3458999999999999999999875
No 482
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=93.58 E-value=0.052 Score=44.64 Aligned_cols=24 Identities=29% Similarity=0.628 Sum_probs=21.4
Q ss_pred CCeEEEEecCCCcHHHHHHHHhhc
Q 029512 92 LPEIAFAGRSNVGKSSMLNALTRQ 115 (192)
Q Consensus 92 ~~~i~lvG~~n~GKStlin~L~~~ 115 (192)
...++|.|++|+|||++.+++...
T Consensus 55 ~~~vll~G~~GtGKT~la~~ia~~ 78 (338)
T 3pfi_A 55 LDHILFSGPAGLGKTTLANIISYE 78 (338)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHHH
T ss_pred CCeEEEECcCCCCHHHHHHHHHHH
Confidence 457899999999999999999865
No 483
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=93.54 E-value=0.037 Score=49.05 Aligned_cols=23 Identities=22% Similarity=0.407 Sum_probs=20.8
Q ss_pred eEEEEecCCCcHHHHHHHHhhcc
Q 029512 94 EIAFAGRSNVGKSSMLNALTRQW 116 (192)
Q Consensus 94 ~i~lvG~~n~GKStlin~L~~~~ 116 (192)
-++|+|++|+|||+|.++|.+..
T Consensus 66 GvLL~GppGtGKTtLaraIa~~~ 88 (499)
T 2dhr_A 66 GVLLVGPPGVGKTHLARAVAGEA 88 (499)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHT
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 49999999999999999999753
No 484
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=93.48 E-value=0.042 Score=43.97 Aligned_cols=24 Identities=17% Similarity=0.437 Sum_probs=21.4
Q ss_pred CCeEEEEecCCCcHHHHHHHHhhc
Q 029512 92 LPEIAFAGRSNVGKSSMLNALTRQ 115 (192)
Q Consensus 92 ~~~i~lvG~~n~GKStlin~L~~~ 115 (192)
...++|.|++|+|||++..++...
T Consensus 64 ~~~vLl~G~~GtGKT~la~~ia~~ 87 (272)
T 1d2n_A 64 LVSVLLEGPPHSGKTALAAKIAEE 87 (272)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CeEEEEECCCCCcHHHHHHHHHHH
Confidence 458999999999999999999864
No 485
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=93.46 E-value=0.12 Score=42.63 Aligned_cols=24 Identities=25% Similarity=0.365 Sum_probs=21.7
Q ss_pred CCeEEEEecCCCcHHHHHHHHhhc
Q 029512 92 LPEIAFAGRSNVGKSSMLNALTRQ 115 (192)
Q Consensus 92 ~~~i~lvG~~n~GKStlin~L~~~ 115 (192)
...++|.|+||+|||+|..++...
T Consensus 51 ~~~vLl~GppGtGKT~la~aia~~ 74 (322)
T 3eie_A 51 TSGILLYGPPGTGKSYLAKAVATE 74 (322)
T ss_dssp CCEEEEECSSSSCHHHHHHHHHHH
T ss_pred CCeEEEECCCCCcHHHHHHHHHHH
Confidence 457999999999999999999875
No 486
>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*
Probab=93.43 E-value=0.048 Score=51.05 Aligned_cols=24 Identities=17% Similarity=0.155 Sum_probs=21.1
Q ss_pred CCeEEEEecCCCcHHHHHHHHhhc
Q 029512 92 LPEIAFAGRSNVGKSSMLNALTRQ 115 (192)
Q Consensus 92 ~~~i~lvG~~n~GKStlin~L~~~ 115 (192)
+-.++|+|++|+|||||++.+.+-
T Consensus 607 g~i~~ItGpNGsGKSTlLr~iagl 630 (800)
T 1wb9_A 607 RRMLIITGPNMGGKSTYMRQTALI 630 (800)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CcEEEEECCCCCChHHHHHHHHHH
Confidence 347899999999999999999864
No 487
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=93.30 E-value=0.022 Score=45.30 Aligned_cols=22 Identities=18% Similarity=0.407 Sum_probs=19.9
Q ss_pred eEEEEecCCCcHHHHHHHHhhc
Q 029512 94 EIAFAGRSNVGKSSMLNALTRQ 115 (192)
Q Consensus 94 ~i~lvG~~n~GKStlin~L~~~ 115 (192)
.++|.|++|+|||+|.+++.+.
T Consensus 46 ~vll~G~~GtGKT~la~~la~~ 67 (268)
T 2r62_A 46 GVLLVGPPGTGKTLLAKAVAGE 67 (268)
T ss_dssp CCCCBCSSCSSHHHHHHHHHHH
T ss_pred eEEEECCCCCcHHHHHHHHHHH
Confidence 4789999999999999999875
No 488
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=93.27 E-value=0.048 Score=46.10 Aligned_cols=21 Identities=33% Similarity=0.482 Sum_probs=19.1
Q ss_pred CeEEEEecCCCcHHHHHHHHh
Q 029512 93 PEIAFAGRSNVGKSSMLNALT 113 (192)
Q Consensus 93 ~~i~lvG~~n~GKStlin~L~ 113 (192)
...+|+|++|+||||++.+|.
T Consensus 26 gl~vi~G~NGaGKT~ileAI~ 46 (371)
T 3auy_A 26 GIVAIIGENGSGKSSIFEAVF 46 (371)
T ss_dssp EEEEEEECTTSSHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHH
Confidence 467899999999999999986
No 489
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=93.22 E-value=0.052 Score=45.85 Aligned_cols=24 Identities=17% Similarity=0.336 Sum_probs=21.3
Q ss_pred CeEEEEecCCCcHHHHHHHHhhcc
Q 029512 93 PEIAFAGRSNVGKSSMLNALTRQW 116 (192)
Q Consensus 93 ~~i~lvG~~n~GKStlin~L~~~~ 116 (192)
..|+|+|+||+|||||...|....
T Consensus 8 ~lI~I~GptgSGKTtla~~La~~l 31 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAKKF 31 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHT
T ss_pred ceEEEECCCcCcHHHHHHHHHHHc
Confidence 378999999999999999998753
No 490
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=93.21 E-value=0.057 Score=47.61 Aligned_cols=24 Identities=25% Similarity=0.434 Sum_probs=21.4
Q ss_pred CCeEEEEecCCCcHHHHHHHHhhc
Q 029512 92 LPEIAFAGRSNVGKSSMLNALTRQ 115 (192)
Q Consensus 92 ~~~i~lvG~~n~GKStlin~L~~~ 115 (192)
+.+++|+|.+|+|||||+|.|...
T Consensus 151 Gq~~~i~G~sGvGKTtL~~~l~~~ 174 (473)
T 1sky_E 151 GGKIGLFGGAGVGKTVLIQELIHN 174 (473)
T ss_dssp TCEEEEECCSSSCHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCccHHHHHHHhh
Confidence 458999999999999999999864
No 491
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=93.18 E-value=0.041 Score=39.94 Aligned_cols=23 Identities=4% Similarity=0.164 Sum_probs=20.6
Q ss_pred CeEEEEecCCCcHHHHHHHHhhc
Q 029512 93 PEIAFAGRSNVGKSSMLNALTRQ 115 (192)
Q Consensus 93 ~~i~lvG~~n~GKStlin~L~~~ 115 (192)
..|++.|++|+|||++.+++...
T Consensus 28 ~~vll~G~~GtGKt~lA~~i~~~ 50 (143)
T 3co5_A 28 SPVFLTGEAGSPFETVARYFHKN 50 (143)
T ss_dssp SCEEEEEETTCCHHHHHGGGCCT
T ss_pred CcEEEECCCCccHHHHHHHHHHh
Confidence 46899999999999999999875
No 492
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=93.18 E-value=0.068 Score=44.40 Aligned_cols=24 Identities=17% Similarity=0.163 Sum_probs=21.4
Q ss_pred CCeEEEEecCCCcHHHHHHHHhhc
Q 029512 92 LPEIAFAGRSNVGKSSMLNALTRQ 115 (192)
Q Consensus 92 ~~~i~lvG~~n~GKStlin~L~~~ 115 (192)
...++|.|++|+|||+|.+.+...
T Consensus 45 ~~~vll~G~~G~GKT~la~~l~~~ 68 (384)
T 2qby_B 45 KFSNLFLGLTGTGKTFVSKYIFNE 68 (384)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHH
T ss_pred CCcEEEECCCCCCHHHHHHHHHHH
Confidence 348999999999999999999874
No 493
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=93.16 E-value=0.15 Score=42.16 Aligned_cols=24 Identities=25% Similarity=0.354 Sum_probs=21.5
Q ss_pred CCeEEEEecCCCcHHHHHHHHhhc
Q 029512 92 LPEIAFAGRSNVGKSSMLNALTRQ 115 (192)
Q Consensus 92 ~~~i~lvG~~n~GKStlin~L~~~ 115 (192)
...++|.|++|+|||+|.+++.+.
T Consensus 45 ~~~iLL~GppGtGKT~la~ala~~ 68 (322)
T 1xwi_A 45 WRGILLFGPPGTGKSYLAKAVATE 68 (322)
T ss_dssp CSEEEEESSSSSCHHHHHHHHHHH
T ss_pred CceEEEECCCCccHHHHHHHHHHH
Confidence 357999999999999999999975
No 494
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=93.15 E-value=0.05 Score=47.45 Aligned_cols=24 Identities=29% Similarity=0.321 Sum_probs=21.5
Q ss_pred CCeEEEEecCCCcHHHHHHHHhhc
Q 029512 92 LPEIAFAGRSNVGKSSMLNALTRQ 115 (192)
Q Consensus 92 ~~~i~lvG~~n~GKStlin~L~~~ 115 (192)
...|+++|.+|+||||+.+.|...
T Consensus 39 ~~~IvlvGlpGsGKSTia~~La~~ 62 (469)
T 1bif_A 39 PTLIVMVGLPARGKTYISKKLTRY 62 (469)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHH
T ss_pred cEEEEEECCCCCCHHHHHHHHHHH
Confidence 458999999999999999999864
No 495
>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*
Probab=93.11 E-value=0.048 Score=50.80 Aligned_cols=23 Identities=22% Similarity=0.278 Sum_probs=20.7
Q ss_pred CeEEEEecCCCcHHHHHHHHhhc
Q 029512 93 PEIAFAGRSNVGKSSMLNALTRQ 115 (192)
Q Consensus 93 ~~i~lvG~~n~GKStlin~L~~~ 115 (192)
-.++|+|++|+|||||++.+.+-
T Consensus 577 ~i~~I~GpNGsGKSTlLr~iagl 599 (765)
T 1ewq_A 577 ELVLITGPNMAGKSTFLRQTALI 599 (765)
T ss_dssp CEEEEESCSSSSHHHHHHHHHHH
T ss_pred cEEEEECCCCCChHHHHHHHHhh
Confidence 47899999999999999999864
No 496
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=93.10 E-value=0.078 Score=43.97 Aligned_cols=24 Identities=17% Similarity=0.357 Sum_probs=21.5
Q ss_pred CCeEEEEecCCCcHHHHHHHHhhc
Q 029512 92 LPEIAFAGRSNVGKSSMLNALTRQ 115 (192)
Q Consensus 92 ~~~i~lvG~~n~GKStlin~L~~~ 115 (192)
...++|.|+||+|||++..++...
T Consensus 70 ~~~vLl~GppGtGKT~la~~la~~ 93 (368)
T 3uk6_A 70 GRAVLIAGQPGTGKTAIAMGMAQA 93 (368)
T ss_dssp TCEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHH
Confidence 358999999999999999999865
No 497
>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*
Probab=93.08 E-value=0.054 Score=45.98 Aligned_cols=23 Identities=30% Similarity=0.512 Sum_probs=20.3
Q ss_pred CCCeEEEEecCCCcHHHHHHHHh
Q 029512 91 DLPEIAFAGRSNVGKSSMLNALT 113 (192)
Q Consensus 91 ~~~~i~lvG~~n~GKStlin~L~ 113 (192)
...+|+|+|.+++||||++..+.
T Consensus 32 ~~~killlG~~~SGKST~~kq~~ 54 (362)
T 1zcb_A 32 RLVKILLLGAGESGKSTFLKQMR 54 (362)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHH
T ss_pred CccEEEEECCCCCcHHHHHHHHH
Confidence 35799999999999999988874
No 498
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=93.06 E-value=0.054 Score=47.00 Aligned_cols=24 Identities=17% Similarity=0.344 Sum_probs=21.5
Q ss_pred CCeEEEEecCCCcHHHHHHHHhhc
Q 029512 92 LPEIAFAGRSNVGKSSMLNALTRQ 115 (192)
Q Consensus 92 ~~~i~lvG~~n~GKStlin~L~~~ 115 (192)
...++|.|++|+|||||++++.+.
T Consensus 130 ~~~lll~Gp~G~GKTtLa~aia~~ 153 (440)
T 2z4s_A 130 YNPLFIYGGVGLGKTHLLQSIGNY 153 (440)
T ss_dssp SCCEEEECSSSSSHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH
Confidence 457899999999999999999874
No 499
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=93.06 E-value=0.062 Score=41.30 Aligned_cols=23 Identities=26% Similarity=0.463 Sum_probs=20.7
Q ss_pred CeEEEEecCCCcHHHHHHHHhhc
Q 029512 93 PEIAFAGRSNVGKSSMLNALTRQ 115 (192)
Q Consensus 93 ~~i~lvG~~n~GKStlin~L~~~ 115 (192)
..|+|+|.+|+||||+.+.|...
T Consensus 4 ~~i~i~G~~gsGkst~~~~l~~~ 26 (219)
T 2h92_A 4 INIALDGPAAAGKSTIAKRVASE 26 (219)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHh
Confidence 47999999999999999999864
No 500
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=93.03 E-value=0.085 Score=45.98 Aligned_cols=25 Identities=20% Similarity=0.154 Sum_probs=22.1
Q ss_pred CCeEEEEecCCCcHHHHHHHHhhcc
Q 029512 92 LPEIAFAGRSNVGKSSMLNALTRQW 116 (192)
Q Consensus 92 ~~~i~lvG~~n~GKStlin~L~~~~ 116 (192)
..-|+|.|+||+|||+|..++++..
T Consensus 215 prGvLLyGPPGTGKTllAkAiA~e~ 239 (434)
T 4b4t_M 215 PKGALMYGPPGTGKTLLARACAAQT 239 (434)
T ss_dssp CCEEEEESCTTSSHHHHHHHHHHHH
T ss_pred CCeeEEECcCCCCHHHHHHHHHHHh
Confidence 3479999999999999999999864
Done!