RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= 029512
(192 letters)
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP;
1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A*
1svw_A*
Length = 195
Score = 139 bits (352), Expect = 4e-42
Identities = 43/94 (45%), Positives = 59/94 (62%)
Query: 73 NKLEFFAAAKVSSSFPAPDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTIN 132
K E +A +P LPEIA AGRSNVGKSS +N+L + + RTS KPG TQT+N
Sbjct: 4 TKSEIVISAVKPEQYPEGGLPEIALAGRSNVGKSSFINSLINRKNLARTSSKPGKTQTLN 63
Query: 133 FFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVS 166
F+ + +L VD+PGYGFA + ++AW ++
Sbjct: 64 FYIINDELHFVDVPGYGFAKVSKSEREAWGRMIE 97
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics,
nysgxrc T16, GTPase, PSI, protein structure initiative;
2.00A {Escherichia coli} SCOP: c.37.1.8
Length = 210
Score = 138 bits (350), Expect = 1e-41
Identities = 44/98 (44%), Positives = 56/98 (57%)
Query: 69 NIFRNKLEFFAAAKVSSSFPAPDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLT 128
N+ + F +A P+ E+AFAGRSN GKSS LN LT Q + RTS PG T
Sbjct: 3 NLNYQQTHFVMSAPDIRHLPSDTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRT 62
Query: 129 QTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVS 166
Q IN F++ LVDLPGYG+A EE+K W+ +
Sbjct: 63 QLINLFEVADGKRLVDLPGYGYAEVPEEMKRKWQRALG 100
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell
cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima}
PDB: 3pr1_A
Length = 195
Score = 134 bits (340), Expect = 2e-40
Identities = 39/94 (41%), Positives = 56/94 (59%), Gaps = 1/94 (1%)
Query: 73 NKLEFFAAAKVSSSFPAPDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTIN 132
+E A+ +P P E+AF GRSNVGKSS+LNAL + + S PG T++IN
Sbjct: 4 RDVELVKVARTPGDYPPPLKGEVAFVGRSNVGKSSLLNALFNR-KIAFVSKTPGKTRSIN 62
Query: 133 FFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVS 166
F+ + +K VDLPGYG+A ++ + W+ LV
Sbjct: 63 FYLVNSKYYFVDLPGYGYAKVSKKERMLWKRLVE 96
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase,
cell division, cell cycle, SEP GTP-binding; 2.20A
{Burkholderia thailandensis}
Length = 223
Score = 133 bits (337), Expect = 1e-39
Identities = 41/97 (42%), Positives = 51/97 (52%), Gaps = 4/97 (4%)
Query: 73 NKLEFFAAAKVSSSFPAPDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTIN 132
++ FF P PEIAFAGRSN GKS+ +N L Q + S PG TQ IN
Sbjct: 10 HQARFFTTVNHLRDLPPTVQPEIAFAGRSNAGKSTAINVLCNQKRLAFASKTPGRTQHIN 69
Query: 133 FFKLG----TKLCLVDLPGYGFAYAKEEVKDAWEELV 165
+F +G LVDLPGYG+A K WE+L+
Sbjct: 70 YFSVGPAAEPVAHLVDLPGYGYAEVPGAAKAHWEQLL 106
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA,
national P protein structural and functional analyses;
HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Length = 190
Score = 100 bits (252), Expect = 3e-27
Identities = 26/75 (34%), Positives = 44/75 (58%), Gaps = 4/75 (5%)
Query: 92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFA 151
+ I FAGRSNVGKS+++ LT + VR +PG+T+ I + ++D+PG+GF
Sbjct: 1 MATIIFAGRSNVGKSTLIYRLTGKK--VRRGKRPGVTRKIIEIEWKNHK-IIDMPGFGFM 57
Query: 152 YAKE-EVKDAWEELV 165
EV++ ++ +
Sbjct: 58 MGLPKEVQERIKDEI 72
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer,
immunology, signaling protein; HET: GDP; 1.95A {Mus
musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A*
1tq2_A*
Length = 413
Score = 64.0 bits (155), Expect = 1e-12
Identities = 19/100 (19%), Positives = 35/100 (35%), Gaps = 8/100 (8%)
Query: 64 ERIEENIFRNKLEFFAAAKVSSSFPAPD--LPEIAFAGRSNVGKSSMLNALTRQWG---V 118
IE + ++ + +S + D + +A G + GKSS +N L
Sbjct: 40 NLIELRMRAGNIQL-TNSAISDALKEIDSSVLNVAVTGETGSGKSSFINTLRGIGNEEEG 98
Query: 119 VRTSDKPGLTQTINFFKLG--TKLCLVDLPGYGFAYAKEE 156
+ +T + +K + DLPG G +
Sbjct: 99 AAKTGVVEVTMERHPYKHPNIPNVVFWDLPGIGSTNFPPD 138
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics,
nysgxrc T18, GTPase, PSI, protein structure initiative;
HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Length = 282
Score = 52.7 bits (127), Expect = 8e-09
Identities = 19/46 (41%), Positives = 33/46 (71%), Gaps = 1/46 (2%)
Query: 102 NVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPG 147
NVGKS+++N L ++ + +T D+PG+T + + K+G +L L+D PG
Sbjct: 130 NVGKSTLINRLAKK-NIAKTGDRPGITTSQQWVKVGKELELLDTPG 174
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP,
signaling protein; HET: GNP; 2.00A {Thermotoga maritima}
PDB: 3cnn_A* 3cno_A*
Length = 262
Score = 51.9 bits (125), Expect = 2e-08
Identities = 15/46 (32%), Positives = 26/46 (56%), Gaps = 1/46 (2%)
Query: 102 NVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPG 147
N GKS+++N L + +PG+T+ I +F L + ++D PG
Sbjct: 109 NTGKSTIINKLKGK-RASSVGAQPGITKGIQWFSLENGVKILDTPG 153
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved
in replication initiation, csgid, IDP90222; HET: DGI;
1.80A {Bacillus anthracis str}
Length = 368
Score = 51.5 bits (123), Expect = 2e-08
Identities = 18/59 (30%), Positives = 26/59 (44%), Gaps = 5/59 (8%)
Query: 95 IAFAGRSNVGKSSMLNALT-----RQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGY 148
+ G +NVGKS+ +N + V+ TS PG T + L + L D PG
Sbjct: 163 VYVVGCTNVGKSTFINRMIKEFSDETENVITTSHFPGTTLDLIDIPLDEESSLYDTPGI 221
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron
transport, GTPase, transmembrane, potassium; HET: GGM;
1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A*
3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Length = 272
Score = 49.6 bits (119), Expect = 1e-07
Identities = 23/73 (31%), Positives = 30/73 (41%), Gaps = 18/73 (24%)
Query: 95 IAFAGRSNVGKSSMLNALT--RQ----WGVVRTSDKPGLT--QTINFFKLGTKLCLVDLP 146
IA G N GK+S+ N +T Q W PG+T + K L + DLP
Sbjct: 6 IALIGNPNSGKTSLFNLITGHNQRVGNW--------PGVTVERKSGLVKKNKDLEIQDLP 57
Query: 147 G-YGF-AYAKEEV 157
G Y Y+ E
Sbjct: 58 GIYSMSPYSPEAK 70
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling
protein; HET: GDP; 2.36A {Geobacillus
stearothermophilus}
Length = 369
Score = 49.6 bits (118), Expect = 1e-07
Identities = 22/78 (28%), Positives = 34/78 (43%), Gaps = 5/78 (6%)
Query: 95 IAFAGRSNVGKSSMLNALTRQWG----VVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGF 150
+ G +NVGKS+ +N + + V+ TS PG T + L + L D PG
Sbjct: 165 VYVVGCTNVGKSTFINRIIEEATGKGNVITTSYFPGTTLDMIEIPLESGATLYDTPGIIN 224
Query: 151 AYAKEEVKDAWEELVSIS 168
+ DA +L I+
Sbjct: 225 HHQMAHFVDA-RDLKIIT 241
>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation,
GTP-binding domain, maturation enzyme, oxidoreductase;
2.99A {Thermotoga neapolitana}
Length = 423
Score = 48.9 bits (117), Expect = 2e-07
Identities = 25/58 (43%), Positives = 31/58 (53%), Gaps = 7/58 (12%)
Query: 95 IAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLT-----QTINFFKLGTKLCLVDLPG 147
I AGR NVGKSS +NAL Q V SD G T +++ +G + LVD PG
Sbjct: 37 IVVAGRRNVGKSSFMNALVGQ-NVSIVSDYAGTTTDPVYKSMELHPIG-PVTLVDTPG 92
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell
membrane, ION transport, transmembrane; HET: GNP; 1.90A
{Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Length = 165
Score = 45.9 bits (110), Expect = 8e-07
Identities = 27/74 (36%), Positives = 36/74 (48%), Gaps = 19/74 (25%)
Query: 95 IAFAGRSNVGKSSMLNALT--RQ----WGVVRTSDKPGLT--QTINFFKL-GTKLCLVDL 145
IA G NVGKS++ NALT W PG+T + F+ G K +VDL
Sbjct: 6 IALIGNPNVGKSTIFNALTGENVYIGNW--------PGVTVEKKEGEFEYNGEKFKVVDL 57
Query: 146 PG-YGF-AYAKEEV 157
PG Y A + +E+
Sbjct: 58 PGVYSLTANSIDEI 71
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle,
G-protein, prokaryote, GTP-BIND nucleotide-binding,
metal transport; 2.70A {Pyrococcus furiosus}
Length = 271
Score = 46.5 bits (111), Expect = 1e-06
Identities = 24/74 (32%), Positives = 37/74 (50%), Gaps = 19/74 (25%)
Query: 95 IAFAGRSNVGKSSMLNALT--RQ----WGVVRTSDKPGLT--QTINFFKL-GTKLCLVDL 145
+A G NVGK+++ NALT RQ W PG+T + + + +VDL
Sbjct: 6 VALVGNPNVGKTTIFNALTGLRQHVGNW--------PGVTVEKKEGIMEYREKEFLVVDL 57
Query: 146 PG-YGF-AYAKEEV 157
PG Y A++ +E+
Sbjct: 58 PGIYSLTAHSIDEL 71
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane
G-proteins, cell membrane, ION transport, transmembrane;
HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Length = 188
Score = 46.0 bits (110), Expect = 1e-06
Identities = 27/74 (36%), Positives = 36/74 (48%), Gaps = 19/74 (25%)
Query: 95 IAFAGRSNVGKSSMLNALT--RQ----WGVVRTSDKPGLT--QTINFFKL-GTKLCLVDL 145
IA G NVGKS++ NALT W PG+T + F+ G K +VDL
Sbjct: 10 IALIGNPNVGKSTIFNALTGENVYIGNW--------PGVTVEKKEGEFEYNGEKFKVVDL 61
Query: 146 PG-YGF-AYAKEEV 157
PG Y A + +E+
Sbjct: 62 PGVYSLTANSIDEI 75
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase,
G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima}
PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Length = 258
Score = 46.1 bits (110), Expect = 2e-06
Identities = 26/74 (35%), Positives = 36/74 (48%), Gaps = 19/74 (25%)
Query: 95 IAFAGRSNVGKSSMLNALT--RQ----WGVVRTSDKPGLT--QTINFFKL-GTKLCLVDL 145
+A AG NVGK+S+ NALT +Q W PG+T + F G + L+DL
Sbjct: 8 VALAGCPNVGKTSLFNALTGTKQYVANW--------PGVTVEKKEGVFTYKGYTINLIDL 59
Query: 146 PG-YGF-AYAKEEV 157
PG Y + +E
Sbjct: 60 PGTYSLGYSSIDEK 73
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO,
cell inner membrane, cell ME GTP-binding, ION transport,
membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A*
3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Length = 274
Score = 45.0 bits (107), Expect = 3e-06
Identities = 24/86 (27%), Positives = 35/86 (40%), Gaps = 22/86 (25%)
Query: 95 IAFAGRSNVGKSSMLNALT--RQ----WGVVRTSDKPGLT--QTINFFKL-GTKLCLVDL 145
I G N GK+++ N LT RQ W G+T + F ++ LVDL
Sbjct: 6 IGLIGNPNSGKTTLFNQLTGSRQRVGNW--------AGVTVERKEGQFSTTDHQVTLVDL 57
Query: 146 PG-YGF-AYAKEEVKDAWEELVSISY 169
PG Y + + D E ++ Y
Sbjct: 58 PGTYSLTTISSQTSLD---EQIACHY 80
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake,
cell inner membrane, cell GTP-binding, ION transport,
membrane; 2.50A {Legionella pneumophila}
Length = 256
Score = 43.4 bits (103), Expect = 1e-05
Identities = 20/78 (25%), Positives = 30/78 (38%), Gaps = 23/78 (29%)
Query: 95 IAFAGRSNVGKSSMLNALT--RQ----WGVVRTSDKPGLT--QTINFFKL-GTKLCLVDL 145
G N GK+++ NALT Q W PG+T + F L + + DL
Sbjct: 4 ALLIGNPNCGKTTLFNALTNANQRVGNW--------PGVTVEKKTGEFLLGEHLIEITDL 55
Query: 146 PG------YGFAYAKEEV 157
PG +++E
Sbjct: 56 PGVYSLVANAEGISQDEQ 73
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP;
1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A*
2j3e_A*
Length = 262
Score = 43.3 bits (102), Expect = 1e-05
Identities = 16/56 (28%), Positives = 24/56 (42%), Gaps = 4/56 (7%)
Query: 95 IAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKL---GTKLCLVDLPG 147
+ G+ VGKSS +N+L + VVR S G + ++D PG
Sbjct: 39 VLVLGKGGVGKSSTVNSLIGE-QVVRVSPFQAEGLRPVMVSRTMGGFTINIIDTPG 93
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET:
GDP; 2.50A {Bacillus subtilis}
Length = 436
Score = 42.9 bits (102), Expect = 2e-05
Identities = 17/60 (28%), Positives = 30/60 (50%), Gaps = 4/60 (6%)
Query: 88 PAPDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQ---TINFFKLGTKLCLVD 144
++ + GR NVGKSS++NA+ + V+ S+ G T+ +F + +VD
Sbjct: 171 YNEEVIQFCLIGRPNVGKSSLVNAMLGEERVI-VSNVAGTTRDAVDTSFTYNQQEFVIVD 229
Score = 39.0 bits (92), Expect = 5e-04
Identities = 16/40 (40%), Positives = 22/40 (55%), Gaps = 7/40 (17%)
Query: 92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTS---DKPGLT 128
P +A GR NVGKS++ N + + R S D PG+T
Sbjct: 3 KPVVAIVGRPNVGKSTIFNRIAGE----RISIVEDTPGVT 38
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem
G-domains, ligand binding protein; HET: GDP; 1.90A
{Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Length = 439
Score = 42.9 bits (102), Expect = 2e-05
Identities = 20/58 (34%), Positives = 28/58 (48%), Gaps = 4/58 (6%)
Query: 90 PDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQ---TINFFKLGTKLCLVD 144
D ++A GR NVGKS++ NA+ + + S PG T+ F G K VD
Sbjct: 178 TDAIKVAIVGRPNVGKSTLFNAILNKERAL-VSPIPGTTRDPVDDEVFIDGRKYVFVD 234
Score = 39.8 bits (94), Expect = 2e-04
Identities = 12/40 (30%), Positives = 22/40 (55%), Gaps = 7/40 (17%)
Query: 92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTS---DKPGLT 128
+ + GR NVGKS++ N L ++ + + D+ G+T
Sbjct: 1 MATVLIVGRPNVGKSTLFNKLVKK----KKAIVEDEEGVT 36
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural
genomics; HET: GDP; 1.96A {Thermus thermophilus}
Length = 161
Score = 40.5 bits (96), Expect = 6e-05
Identities = 15/40 (37%), Positives = 24/40 (60%), Gaps = 7/40 (17%)
Query: 92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTS---DKPGLT 128
+ ++ GR NVGKSS+ N L ++ R++ D PG+T
Sbjct: 1 MHKVVIVGRPNVGKSSLFNRLLKK----RSAVVADVPGVT 36
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET:
GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Length = 270
Score = 40.3 bits (94), Expect = 1e-04
Identities = 21/96 (21%), Positives = 39/96 (40%), Gaps = 9/96 (9%)
Query: 60 SSERERIEENIFRNKLEFFAAAKV---SSSFPAPDLPE--IAFAGRSNVGKSSMLNALTR 114
+S+++ + E N K+ + D+ I G+ VGKSS +N++
Sbjct: 2 ASQQQTVREWSGINTFAPATQTKLLELLGNLKQEDVNSLTILVMGKGGVGKSSTVNSIIG 61
Query: 115 QWGVVRTSDKPGLTQT---INFFKLGTKLCLVDLPG 147
+ VV S ++ + G L ++D PG
Sbjct: 62 E-RVVSISPFQSEGPRPVMVSRSRAGFTLNIIDTPG 96
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer,
alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A
{Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A*
2gja_A* 1rfl_A
Length = 172
Score = 38.3 bits (90), Expect = 4e-04
Identities = 12/21 (57%), Positives = 15/21 (71%)
Query: 95 IAFAGRSNVGKSSMLNALTRQ 115
+ AGR N GKSS+LNAL +
Sbjct: 7 VVIAGRPNAGKSSLLNALAGR 27
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote
initiative, RSGI, structural genomics, hydrolase; HET:
GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8
d.52.3.1
Length = 301
Score = 38.6 bits (91), Expect = 5e-04
Identities = 15/36 (41%), Positives = 20/36 (55%), Gaps = 4/36 (11%)
Query: 95 IAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQT 130
+A G+ NVGKS++LN L V S +P QT
Sbjct: 10 VAIVGKPNVGKSTLLNNLLGV-KVAPISPRP---QT 41
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA,
30S ribosome ASSE GTP-binding, nucleotide-binding; HET:
GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Length = 308
Score = 38.6 bits (91), Expect = 6e-04
Identities = 14/36 (38%), Positives = 18/36 (50%), Gaps = 4/36 (11%)
Query: 95 IAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQT 130
+A G+ NVGKS++LN L V S K T
Sbjct: 13 VAIVGKPNVGKSTLLNNLLGT-KVSIISPKA---GT 44
>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding,
hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1
c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*
Length = 482
Score = 37.9 bits (89), Expect = 0.001
Identities = 9/21 (42%), Positives = 14/21 (66%)
Query: 95 IAFAGRSNVGKSSMLNALTRQ 115
+ G+ NVGKS++LN L +
Sbjct: 246 MVIVGKPNVGKSTLLNRLLNE 266
>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP-
binding, hydrolase, magnesium, metal-binding,
nucleotide- binding, potassium; HET: GDP FON; 2.95A
{Chlorobium tepidum} PDB: 3gei_A*
Length = 476
Score = 37.9 bits (89), Expect = 0.001
Identities = 10/21 (47%), Positives = 13/21 (61%)
Query: 95 IAFAGRSNVGKSSMLNALTRQ 115
AG+ N GKS++LN L Q
Sbjct: 236 TVIAGKPNAGKSTLLNTLLGQ 256
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding,
HYDR magnesium, metal-binding, nucleotide-binding,
potassium, TR processing; HET: GDP FON; 3.20A {Nostoc
SP}
Length = 462
Score = 37.9 bits (89), Expect = 0.001
Identities = 12/21 (57%), Positives = 16/21 (76%)
Query: 95 IAFAGRSNVGKSSMLNALTRQ 115
+A GR NVGKSS+LNA ++
Sbjct: 227 VAIVGRPNVGKSSLLNAWSQS 247
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria,
structural genomics, structural genomics consortium,
SGC, unknown function; HET: GDP; 2.01A {Plasmodium
falciparum}
Length = 228
Score = 37.1 bits (86), Expect = 0.002
Identities = 18/61 (29%), Positives = 26/61 (42%), Gaps = 5/61 (8%)
Query: 90 PDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTIN---FFKLGTKLCLVDLP 146
P I +G NVGKSS +N ++R V T+ + F K ++D P
Sbjct: 27 PHKKTIILSGAPNVGKSSFMNIVSR--ANVDVQSYSFTTKNLYVGHFDHKLNKYQIIDTP 84
Query: 147 G 147
G
Sbjct: 85 G 85
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like,
hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8
d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Length = 301
Score = 37.0 bits (87), Expect = 0.002
Identities = 18/36 (50%), Positives = 21/36 (58%), Gaps = 4/36 (11%)
Query: 95 IAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQT 130
IA GR NVGKS++LN L Q + TS K QT
Sbjct: 11 IAIVGRPNVGKSTLLNKLLGQ-KISITSRKA---QT 42
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein;
HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Length = 274
Score = 36.7 bits (84), Expect = 0.002
Identities = 17/79 (21%), Positives = 31/79 (39%), Gaps = 14/79 (17%)
Query: 98 AGRSNVGKSSMLNAL-----------TRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLP 146
G S +GKS+++N+L + +T I + L +VD P
Sbjct: 14 VGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTP 73
Query: 147 GYGFAYAKEEVKDAWEELV 165
G+G A + W+ ++
Sbjct: 74 GFGDAVDNS---NCWQPVI 89
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC,
mitosis, GDP, C cycle, cell division, GTP-binding,
nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB:
2qa5_A* 3ftq_A*
Length = 301
Score = 36.7 bits (84), Expect = 0.002
Identities = 18/90 (20%), Positives = 35/90 (38%), Gaps = 12/90 (13%)
Query: 95 IAFAGRSNVGKSSMLNAL-----TRQWGVVRTSDKPGLTQTINFFKLG-------TKLCL 142
+ G S +GKS+++N+L + + ++K T I + +L +
Sbjct: 21 LMVVGESGLGKSTLINSLFLTDLYPERVISGAAEKIERTVQIEASTVEIEERGVKLRLTV 80
Query: 143 VDLPGYGFAYAKEEVKDAWEELVSISYRNF 172
VD PGYG A + + + +
Sbjct: 81 VDTPGYGDAINCRDCFKTIISYIDEQFERY 110
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC,
coiled coil, GTP- binding, nucleotide-binding, immune
system; HET: GDP; 2.15A {Homo sapiens}
Length = 239
Score = 35.4 bits (81), Expect = 0.006
Identities = 16/66 (24%), Positives = 27/66 (40%), Gaps = 5/66 (7%)
Query: 95 IAFAGRSNVGKSSMLNALT-RQWGVVRTSDKPGLTQTINFFKL---GTKLCLVDLPGYGF 150
I G++ GKS+ N++ R+ T+ K +T+ T+L +VD PG
Sbjct: 32 IVLVGKTGAGKSATGNSILGRKVFHSGTAAKS-ITKKCEKRSSSWKETELVVVDTPGIFD 90
Query: 151 AYAKEE 156
Sbjct: 91 TEVPNA 96
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels,
nucleotide-binding, nucleotide binding protein; 2.00A
{Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A
3kxk_A
Length = 364
Score = 35.7 bits (83), Expect = 0.006
Identities = 10/24 (41%), Positives = 16/24 (66%)
Query: 91 DLPEIAFAGRSNVGKSSMLNALTR 114
++P I G +N GK+S+ N+LT
Sbjct: 178 NIPSIGIVGYTNSGKTSLFNSLTG 201
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding,
hydrolase, nucleotide-binding; HET: GDP; 2.25A
{Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Length = 358
Score = 35.3 bits (82), Expect = 0.008
Identities = 24/79 (30%), Positives = 34/79 (43%), Gaps = 11/79 (13%)
Query: 96 AFAGRSNVGKSSMLNALTRQWGVVRT---SDKPGL----TQTINFFKLGTKLCLVDLPGY 148
FAG+S VGKSS+LNAL + T S+ GL T + ++D PG
Sbjct: 219 IFAGQSGVGKSSLLNALLGLQNEILTNDVSNVSGLGQHTTTAARLYHFPHGGDVIDSPGV 278
Query: 149 -GFAY---AKEEVKDAWEE 163
F E++ + E
Sbjct: 279 REFGLWHLEPEQITQGFVE 297
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 34.4 bits (78), Expect = 0.018
Identities = 30/194 (15%), Positives = 51/194 (26%), Gaps = 48/194 (24%)
Query: 17 QPSPSILSFVEDNLLGRRRPIELRRAGYNIELSAPLDNIPFSTSSERERIEENIFRNKL- 75
+ + FVE+ L R Y L +P+ S E R++L
Sbjct: 74 KQEEMVQKFVEEVL----------RINYKF-LMSPIKTEQRQPSMMTRMYIE--QRDRLY 120
Query: 76 ---EFFAAAKVSSSFPAPDL--------PE--IAFAGRSNVGKSSMLNALTRQ------- 115
+ FA VS P L P + G GK+ + +
Sbjct: 121 NDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKM 180
Query: 116 -----WGVVRTSDKPG--LTQTINFF-KLGTKLCLVDLPGYGFAYAKEEVKDAWEELVSI 167
W ++ + P L ++ ++ L+
Sbjct: 181 DFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKS 240
Query: 168 -SYRNFWSCTCFLI 180
Y N C L+
Sbjct: 241 KPYEN-----CLLV 249
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP,
complex, structural G NPPSFA; HET: GDP; 2.35A
{Pyrococcus horikoshii}
Length = 357
Score = 34.1 bits (78), Expect = 0.018
Identities = 20/61 (32%), Positives = 30/61 (49%), Gaps = 5/61 (8%)
Query: 90 PDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTIN---FFKLGTKLCLVDLP 146
++P + AG NVGKS++L ALT + P T+ IN F + ++D P
Sbjct: 165 LEIPTVVIAGHPNVGKSTLLKALTT--AKPEIASYPFTTRGINVGQFEDGYFRYQIIDTP 222
Query: 147 G 147
G
Sbjct: 223 G 223
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural
genomics, BSGC structure funded by NIH, protein
structure initiative, PSI; HET: GDP; 2.80A {Thermotoga
maritima} SCOP: b.40.4.5 c.37.1.8
Length = 301
Score = 34.0 bits (79), Expect = 0.020
Identities = 25/82 (30%), Positives = 34/82 (41%), Gaps = 12/82 (14%)
Query: 96 AFAGRSNVGKSSMLNALTRQWGVVRT---SDKPGL----TQTINFFKLGTKLCLVDLPGY 148
AG S VGKSS+LNA+ +R S+K T T K +VD PG+
Sbjct: 173 TMAGLSGVGKSSLLNAINPGLK-LRVSEVSEKLQRGRHTTTTAQLLKFDFGGYVVDTPGF 231
Query: 149 -GFAY---AKEEVKDAWEELVS 166
EE+K ++E
Sbjct: 232 ANLEINDIEPEELKHYFKEFGD 253
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR,
protein transport; HET: GNP; 2.77A {Saccharomyces
cerevisiae}
Length = 307
Score = 33.8 bits (77), Expect = 0.022
Identities = 22/103 (21%), Positives = 32/103 (31%), Gaps = 18/103 (17%)
Query: 90 PDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINF------FKLGTKLCLV 143
P ++ GRS GKSSM + + D L TI+ F L L
Sbjct: 1 PLGSKLLLMGRSGSGKSSMRSIIFSN---YSAFDTRRLGATIDVEHSHLRFLGNMTLNLW 57
Query: 144 DLPGYGFAYAKEEVKDAWEELVSISYRNFWSCTCFLIYIFYTN 186
D G E + + + LI++F
Sbjct: 58 DCGGQ---------DVFMENYFTKQKDHIFQMVQVLIHVFDVE 91
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding,
nucleotide-binding, phosphorylation, acetylation,
alternative splicing, coiled coil; HET: GDP GTP; 4.00A
{Homo sapiens}
Length = 427
Score = 33.6 bits (76), Expect = 0.030
Identities = 21/76 (27%), Positives = 37/76 (48%), Gaps = 10/76 (13%)
Query: 98 AGRSNVGKSSMLNAL--TRQWGVVRTSDKPGLTQTINFFKLG-----TKLCLVDLPGYGF 150
G + +GKS++++ L T+ G T +PG+ N + L KL +V G+G
Sbjct: 48 VGETGLGKSTLMDTLFNTKFEGEPATHTQPGVQLQSNTYDLQESNVRLKLTIVSTVGFGD 107
Query: 151 AYAKEEVKDAWEELVS 166
KE D+++ +V
Sbjct: 108 QINKE---DSYKPIVE 120
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Length = 302
Score = 33.3 bits (77), Expect = 0.033
Identities = 25/93 (26%), Positives = 39/93 (41%), Gaps = 15/93 (16%)
Query: 96 AFAGRSNVGKSSMLNALTRQWGVVRT---SDKPGL----TQTINFFKLGTKLCLVDLPGY 148
AG S VGKSS+L+ LT + +RT S+K T + G + D PG+
Sbjct: 169 ILAGPSGVGKSSILSRLTGE--ELRTQEVSEKTERGRHTTTGVRLIPFGKGSFVGDTPGF 226
Query: 149 -GFAYA----KEEVKDAWEELVSISYRNFWSCT 176
EV++ + E + + + CT
Sbjct: 227 SKVEATMFVKPREVRNYFREFLRYQCK-YPDCT 258
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with
oligonucleotide binding fold, central GTP binding
domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5
c.37.1.8
Length = 307
Score = 33.3 bits (77), Expect = 0.034
Identities = 12/17 (70%), Positives = 15/17 (88%)
Query: 96 AFAGRSNVGKSSMLNAL 112
FAG+S VGKSS+LNA+
Sbjct: 177 VFAGQSGVGKSSLLNAI 193
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics
consortium, SGC, immune system; HET: GDP; 2.21A {Homo
sapiens} PDB: 3v70_A*
Length = 247
Score = 33.1 bits (75), Expect = 0.034
Identities = 12/78 (15%), Positives = 23/78 (29%), Gaps = 3/78 (3%)
Query: 95 IAFAGRSNVGKSSMLNA-LTRQWGVVRTSDKPGLTQTINFFKL--GTKLCLVDLPGYGFA 151
+ GR+ GKS+ N+ L ++ R + + +VD P +
Sbjct: 24 LILVGRTGAGKSATGNSILGQRRFFSRLGATSVTRACTTGSRRWDKCHVEVVDTPDIFSS 83
Query: 152 YAKEEVKDAWEELVSISY 169
+ E
Sbjct: 84 QVSKTDPGCEERGHCYLL 101
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding,
nucleotide-binding, phosphorylation, acetylation,
alternative splicing, coiled coil; HET: GDP GTP; 4.00A
{Homo sapiens}
Length = 361
Score = 32.1 bits (72), Expect = 0.088
Identities = 18/90 (20%), Positives = 35/90 (38%), Gaps = 12/90 (13%)
Query: 95 IAFAGRSNVGKSSMLNAL-----TRQWGVVRTSDKPGLTQTINFFKLG-------TKLCL 142
+ G S +GKS+++N+L + + ++K T I + +L +
Sbjct: 40 LMVVGESGLGKSTLINSLFLTDLYPERVIPGAAEKIERTVQIEASTVEIEERGVKLRLTV 99
Query: 143 VDLPGYGFAYAKEEVKDAWEELVSISYRNF 172
VD PGYG A + + + +
Sbjct: 100 VDTPGYGDAINCRDCFKTIISYIDEQFERY 129
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A
{Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Length = 695
Score = 32.3 bits (72), Expect = 0.099
Identities = 8/22 (36%), Positives = 11/22 (50%)
Query: 91 DLPEIAFAGRSNVGKSSMLNAL 112
+ + G GKS+ LNAL
Sbjct: 68 GVFRLLVLGDMKRGKSTFLNAL 89
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium,
SGC, cytoplasm, nucleotide-binding, nucleus,
phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB:
2q3f_A*
Length = 196
Score = 31.1 bits (70), Expect = 0.14
Identities = 19/117 (16%), Positives = 36/117 (30%), Gaps = 21/117 (17%)
Query: 73 NKLEFFAAAKVSSSFPAPDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTIN 132
+ ++ + + F P I G GKSS+ + + + ++ L T
Sbjct: 2 HHHHHHSSGRENLYFQG-SKPRILLMGLRRSGKSSIQKVVFHK---MSPNETLFLESTNK 57
Query: 133 F------FKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVSISYRNFWSCTCFLIYIF 183
+ D PG + + D + Y + T LIY+
Sbjct: 58 IYKDDISNSSFVNFQIWDFPG------QMDFFDPTFD-----YEMIFRGTGALIYVI 103
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE;
1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Length = 260
Score = 30.8 bits (69), Expect = 0.20
Identities = 14/80 (17%), Positives = 31/80 (38%), Gaps = 6/80 (7%)
Query: 95 IAFAGRSNVGKSSMLNALTRQWGVVRTSDKPG-LTQTINFFKL---GTKLCLVDLPGYGF 150
I G++ GKS+ N++ R+ + LT+T + + ++ ++D P
Sbjct: 25 IILVGKTGTGKSAAGNSILRK-QAFESKLGSQTLTKTCSKSQGSWGNREIVIIDTPDMFS 83
Query: 151 AYA-KEEVKDAWEELVSISY 169
E + + +S
Sbjct: 84 WKDHCEALYKEVQRCYLLSA 103
>2qag_C Septin-7; cell cycle, cell division, GTP-binding,
nucleotide-binding, phosphorylation, acetylation,
alternative splicing, coiled coil; HET: GDP GTP; 4.00A
{Homo sapiens}
Length = 418
Score = 30.9 bits (69), Expect = 0.25
Identities = 15/63 (23%), Positives = 25/63 (39%), Gaps = 11/63 (17%)
Query: 98 AGRSNVGKSSMLNAL-----------TRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLP 146
G S +GKS+++N+L + +T I + L +VD P
Sbjct: 37 VGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTP 96
Query: 147 GYG 149
G+G
Sbjct: 97 GFG 99
>1wxq_A GTP-binding protein; structural genomics, riken structural
genomics/proteomics initiative, RSGI, NPPSFA; 2.60A
{Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2
Length = 397
Score = 30.7 bits (70), Expect = 0.30
Identities = 10/21 (47%), Positives = 13/21 (61%)
Query: 94 EIAFAGRSNVGKSSMLNALTR 114
EI G+ NVGKS+ +A T
Sbjct: 2 EIGVVGKPNVGKSTFFSAATL 22
>2qpt_A EH domain-containing protein-2; protein-nucleotide complex,
membrane protein, endocytosis; HET: ANP; 3.10A {Mus
musculus}
Length = 550
Score = 30.1 bits (67), Expect = 0.45
Identities = 9/33 (27%), Positives = 15/33 (45%), Gaps = 3/33 (9%)
Query: 83 VSSSFPAPDL---PEIAFAGRSNVGKSSMLNAL 112
S + D P + AG+ + GK+S + L
Sbjct: 53 HSPALEDADFDGKPMVLVAGQYSTGKTSFIQYL 85
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed
alpha-beta fold, elongated beta-sheet, walker A motif,
P-loop structural motif; 1.90A {Escherichia coli} SCOP:
c.37.1.10 PDB: 1p9n_A
Length = 174
Score = 29.4 bits (65), Expect = 0.49
Identities = 9/25 (36%), Positives = 14/25 (56%)
Query: 92 LPEIAFAGRSNVGKSSMLNALTRQW 116
+P +AFA S GK+++L L
Sbjct: 6 IPLLAFAAWSGTGKTTLLKKLIPAL 30
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB);
structural genomics, PSI, protein structure initiative;
2.10A {Archaeoglobus fulgidus}
Length = 171
Score = 28.9 bits (64), Expect = 0.72
Identities = 4/24 (16%), Positives = 12/24 (50%)
Query: 93 PEIAFAGRSNVGKSSMLNALTRQW 116
++ G S+ GK++++ +
Sbjct: 3 LILSIVGTSDSGKTTLITRMMPIL 26
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like
protein 1A, GTPase, membrane fission, motor Pro; HET:
GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Length = 360
Score = 29.1 bits (65), Expect = 0.95
Identities = 10/24 (41%), Positives = 14/24 (58%)
Query: 90 PDLPEIAFAGRSNVGKSSMLNALT 113
LP IA G + GKSS+L ++
Sbjct: 32 DSLPAIAVVGGQSSGKSSVLESIV 55
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio
project on protein structural and functional analyses;
HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Length = 368
Score = 29.0 bits (66), Expect = 0.98
Identities = 10/13 (76%), Positives = 12/13 (92%)
Query: 102 NVGKSSMLNALTR 114
NVGKS++ NALTR
Sbjct: 11 NVGKSTLFNALTR 23
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 29.2 bits (65), Expect = 0.98
Identities = 21/129 (16%), Positives = 39/129 (30%), Gaps = 40/129 (31%)
Query: 12 QFRAIQPSPS------------------ILSFV----EDNLLGRRRPI------ELRRA- 42
QF I P P+ L +V E + +G+ + E
Sbjct: 36 QFNKILPEPTEGFAADDEPTTPAELVGKFLGYVSSLVEPSKVGQFDQVLNLCLTEFENCY 95
Query: 43 --GYNI-ELSAPLDNIPFSTSSERERIEENIFRNKLEFFAAAKVSSSFPAPDLPEIAFAG 99
G +I L+A L +T + + + +N + A ++ P A
Sbjct: 96 LEGNDIHALAAKLLQENDTTLVKTKE----LIKN---YITARIMAKR-PFDKKSNSALFR 147
Query: 100 RSNVGKSSM 108
G + +
Sbjct: 148 AVGEGNAQL 156
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics,
GTP1OBG, PSI, protein structure initiative; 2.80A
{Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Length = 392
Score = 28.6 bits (65), Expect = 1.3
Identities = 7/13 (53%), Positives = 10/13 (76%)
Query: 102 NVGKSSMLNALTR 114
NVGKS+ A+T+
Sbjct: 30 NVGKSTFFRAITK 42
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop,
OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Length = 396
Score = 28.6 bits (65), Expect = 1.3
Identities = 8/13 (61%), Positives = 9/13 (69%)
Query: 102 NVGKSSMLNALTR 114
NVGKS+ N LT
Sbjct: 32 NVGKSTFFNVLTN 44
>1nrj_B SR-beta, signal recognition particle receptor beta subunit;
transmembrane, endoplasmic reticulum, GTP-binding; HET:
GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Length = 218
Score = 28.2 bits (63), Expect = 1.5
Identities = 21/90 (23%), Positives = 33/90 (36%), Gaps = 15/90 (16%)
Query: 93 PEIAFAGRSNVGKSSMLNALTR-QWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFA 151
P I AG N GK+S+L LT S +P + G+ + LVD PG
Sbjct: 13 PSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSAADYD----GSGVTLVDFPG---- 64
Query: 152 YAKEEVKDAWEELVSISYRNFWSCTCFLIY 181
+++ + + LI+
Sbjct: 65 --HVKLRYKLSDY----LKTRAKFVKGLIF 88
>1jal_A YCHF protein; nucleotide-binding fold, structural genomics,
structure 2 function project, S2F, unknown function;
2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2
Length = 363
Score = 28.2 bits (64), Expect = 1.5
Identities = 9/13 (69%), Positives = 12/13 (92%)
Query: 102 NVGKSSMLNALTR 114
NVGKS++ NALT+
Sbjct: 12 NVGKSTLFNALTK 24
>2xsg_A Ccman5; hydrolase, mannosidase; HET: B3P; 2.00A {Cellulosimicrobium
cellulans}
Length = 774
Score = 28.6 bits (64), Expect = 1.6
Identities = 12/50 (24%), Positives = 18/50 (36%), Gaps = 6/50 (12%)
Query: 145 LPGYGFAYAKEEVKDAWEEL---VSISYRNFWSCTCFLIYIFYTNVIILY 191
L F ++ + W V+I T L +FYT+ LY
Sbjct: 270 LGDLSFDAIRDRTRAEWNATLGRVAIDASTATDPTGELQRLFYTH---LY 316
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter,
lipid flippase, hydrolase, inner membrane, lipid
transport, membrane; 5.50A {Vibrio cholerae}
Length = 582
Score = 28.3 bits (64), Expect = 2.0
Identities = 10/20 (50%), Positives = 13/20 (65%)
Query: 95 IAFAGRSNVGKSSMLNALTR 114
+A GRS GKS++ N TR
Sbjct: 372 VALVGRSGSGKSTIANLFTR 391
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance
regulator, residues 1193-1427...; CFTR, ABC transporter,
nucleotide binding domain, NBD; HET: B44; 2.70A {Homo
sapiens}
Length = 390
Score = 28.1 bits (63), Expect = 2.0
Identities = 8/20 (40%), Positives = 13/20 (65%)
Query: 95 IAFAGRSNVGKSSMLNALTR 114
+ GR+ GKS++L+A R
Sbjct: 50 VGLLGRTGSGKSTLLSAFLR 69
>1xjc_A MOBB protein homolog; structural genomics, midwest center for
structural GEN PSI, protein structure initiative, MCSG;
2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Length = 169
Score = 27.3 bits (60), Expect = 2.2
Identities = 3/27 (11%), Positives = 10/27 (37%)
Query: 89 APDLPEIAFAGRSNVGKSSMLNALTRQ 115
+ + G + GK++++
Sbjct: 1 SNAMNVWQVVGYKHSGKTTLMEKWVAA 27
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter,
lipid flippase, hydrolase, inner membrane, lipid
transport, membrane; HET: ANP; 3.70A {Salmonella
typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A*
3b5z_A* 3b5w_A
Length = 582
Score = 27.5 bits (62), Expect = 2.8
Identities = 9/20 (45%), Positives = 14/20 (70%)
Query: 95 IAFAGRSNVGKSSMLNALTR 114
+A GRS GKS++ + +TR
Sbjct: 372 VALVGRSGSGKSTIASLITR 391
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein
transport, G protein, proline isomerization, circular
permutation; 2.20A {Saccharomyces cerevisiae}
Length = 193
Score = 27.4 bits (61), Expect = 2.8
Identities = 21/90 (23%), Positives = 33/90 (36%), Gaps = 15/90 (16%)
Query: 93 PEIAFAGRSNVGKSSMLNALTR-QWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFA 151
P I AG N GK+S+L LT S +P + G+ + LVD PG
Sbjct: 49 PSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSAADYD----GSGVTLVDFPG---- 100
Query: 152 YAKEEVKDAWEELVSISYRNFWSCTCFLIY 181
+++ + + LI+
Sbjct: 101 --HVKLRYKLSDY----LKTRAKFVKGLIF 124
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport
protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo
sapiens}
Length = 349
Score = 26.8 bits (59), Expect = 5.4
Identities = 16/110 (14%), Positives = 39/110 (35%), Gaps = 13/110 (11%)
Query: 7 MSKNAQFRAIQPSPSILSFVEDNLLGRRRPIELRRAGYNIELSAPLDNIPFSTSSERERI 66
M + + + + + + G+R L A +E ST S ++ +
Sbjct: 2 MKDHTEGLSDKEQRFVDKLYTGLIQGQRAC--LAEAITLVE----------STHSRKKEL 49
Query: 67 EENIFRNKLEFFAAAKVSSSFPAPDLPEIAFAGRSNVGKSSMLNALTRQW 116
+ + + K+ + + S+ P + +G GKS+ + +
Sbjct: 50 AQVLLQ-KVLLYHREQEQSNKGKPLAFRVGLSGPPGAGKSTFIEYFGKML 98
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP
hydrolysis, GDP, GMP, dynamin related, large GTPase
family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens}
SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A*
2bc9_A* 2d4h_A*
Length = 592
Score = 26.8 bits (58), Expect = 5.8
Identities = 17/74 (22%), Positives = 25/74 (33%), Gaps = 7/74 (9%)
Query: 95 IAFAGRSNVGKSSMLNALTRQ-----WGVVRTSDKPGLTQTINFFKLGTK--LCLVDLPG 147
+A G GKS ++N L + G S G+ L L+D G
Sbjct: 41 VAIVGLYRTGKSYLMNKLAGKKKGFSLGSTVQSHTKGIWMWCVPHPKKPGHILVLLDTEG 100
Query: 148 YGFAYAKEEVKDAW 161
G + D+W
Sbjct: 101 LGDVEKGDNQNDSW 114
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta
structure, hydrolase; HET: ADP; 2.40A {Salmonella
typhimurium}
Length = 438
Score = 26.6 bits (59), Expect = 6.0
Identities = 10/18 (55%), Positives = 12/18 (66%), Gaps = 1/18 (5%)
Query: 97 FAGRSNVGKSSMLNALTR 114
FAG S VGKS +L + R
Sbjct: 163 FAG-SGVGKSVLLGMMAR 179
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA
sliding clamp, AAA+ at polymerase, DNA-binding protein;
HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP:
a.80.1.1 c.37.1.20
Length = 354
Score = 26.4 bits (58), Expect = 7.4
Identities = 8/25 (32%), Positives = 11/25 (44%)
Query: 91 DLPEIAFAGRSNVGKSSMLNALTRQ 115
DLP + G + GK + AL
Sbjct: 35 DLPHLLLYGPNGTGKKTRCMALLES 59
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced
antiviral GTPase, membrane associated, PR binding; 3.50A
{Homo sapiens} PDB: 3zys_B
Length = 608
Score = 26.2 bits (57), Expect = 7.6
Identities = 12/24 (50%), Positives = 15/24 (62%)
Query: 91 DLPEIAFAGRSNVGKSSMLNALTR 114
LP IA G + GKSS+L AL+
Sbjct: 44 ALPAIAVIGDQSSGKSSVLEALSG 67
>2ols_A Phosphoenolpyruvate synthase; MC structural genomics, PSI-2,
protein structure initiative, M center for structural
genomics, transferase; 2.40A {Neisseria meningitidis}
Length = 794
Score = 26.0 bits (57), Expect = 8.6
Identities = 13/39 (33%), Positives = 21/39 (53%), Gaps = 5/39 (12%)
Query: 83 VSSSFPAPDLPEIAFAGRS----NV-GKSSMLNALTRQW 116
V SS A DLP+ +FAG+ N+ G ++ A+ +
Sbjct: 124 VRSSATAEDLPDASFAGQQETFLNINGLDNVKEAMHHVF 162
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease
protein; asymmetric dimer, tetramer, P-glycoprotein;
HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Length = 243
Score = 25.5 bits (57), Expect = 9.8
Identities = 11/20 (55%), Positives = 14/20 (70%)
Query: 95 IAFAGRSNVGKSSMLNALTR 114
IAFAG S GKS++ + L R
Sbjct: 31 IAFAGPSGGGKSTIFSLLER 50
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.322 0.137 0.407
Gapped
Lambda K H
0.267 0.0729 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,897,641
Number of extensions: 163654
Number of successful extensions: 691
Number of sequences better than 10.0: 1
Number of HSP's gapped: 668
Number of HSP's successfully gapped: 85
Length of query: 192
Length of database: 6,701,793
Length adjustment: 88
Effective length of query: 104
Effective length of database: 4,244,745
Effective search space: 441453480
Effective search space used: 441453480
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 54 (24.6 bits)