RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= 029512
(192 letters)
>d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis
[TaxId: 1423]}
Length = 195
Score = 73.6 bits (179), Expect = 4e-17
Identities = 43/114 (37%), Positives = 62/114 (54%)
Query: 73 NKLEFFAAAKVSSSFPAPDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTIN 132
K E +A +P LPEIA AGRSNVGKSS +N+L + + RTS KPG TQT+N
Sbjct: 4 TKSEIVISAVKPEQYPEGGLPEIALAGRSNVGKSSFINSLINRKNLARTSSKPGKTQTLN 63
Query: 133 FFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVSISYRNFWSCTCFLIYIFYTN 186
F+ + +L VD+PGYGFA + ++AW ++ + + +
Sbjct: 64 FYIINDELHFVDVPGYGFAKVSKSEREAWGRMIETYITTREELKAVVQIVDLRH 117
>d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli
[TaxId: 562]}
Length = 188
Score = 58.3 bits (139), Expect = 2e-11
Identities = 44/112 (39%), Positives = 59/112 (52%)
Query: 77 FFAAAKVSSSFPAPDLPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKL 136
F +A P+ E+AFAGRSN GKSS LN LT Q + RTS PG TQ IN F++
Sbjct: 1 FVMSAPDIRHLPSDTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLFEV 60
Query: 137 GTKLCLVDLPGYGFAYAKEEVKDAWEELVSISYRNFWSCTCFLIYIFYTNVI 188
LVDLPGYG+A EE+K W+ + S ++ + + +
Sbjct: 61 ADGKRLVDLPGYGYAEVPEEMKRKWQRALGEYLEKRQSLQGLVVLMDIRHPL 112
>d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain
{Thermus thermophilus [TaxId: 274]}
Length = 180
Score = 57.7 bits (138), Expect = 3e-11
Identities = 17/106 (16%), Positives = 34/106 (32%), Gaps = 8/106 (7%)
Query: 92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTIN----FFKLGTKLCLVDLPG 147
+ ++ G N GKSS+L A+TR + + P T + N + L D+PG
Sbjct: 1 IADVGLVGYPNAGKSSLLAAMTRAH--PKIAPYPFTTLSPNLGVVEVSEEERFTLADIPG 58
Query: 148 YGFAYAKEE--VKDAWEELVSISYRNFWSCTCFLIYIFYTNVIILY 191
++ + + + + +
Sbjct: 59 IIEGASEGKGLGLEFLRHIARTRVLLYVLDAADEPLKTLETLRKEV 104
>d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus
horikoshii [TaxId: 53953]}
Length = 184
Score = 53.9 bits (128), Expect = 6e-10
Identities = 24/92 (26%), Positives = 43/92 (46%), Gaps = 3/92 (3%)
Query: 95 IAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYAK 154
I FAGRSNVGKS+++ LT + VR +PG+T+ I + ++D+PG+GF
Sbjct: 3 IIFAGRSNVGKSTLIYRLTGKK--VRRGKRPGVTRKIIEIE-WKNHKIIDMPGFGFMMGL 59
Query: 155 EEVKDAWEELVSISYRNFWSCTCFLIYIFYTN 186
+ + + + + + +
Sbjct: 60 PKEVQERIKDEIVHFIEDNAKNIDVAVLVVDG 91
>d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain
{Bacillus subtilis [TaxId: 1423]}
Length = 185
Score = 53.4 bits (127), Expect = 8e-10
Identities = 16/92 (17%), Positives = 28/92 (30%), Gaps = 8/92 (8%)
Query: 92 LPEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTIN----FFKLGTKLCLVDLPG 147
L ++ G +VGKS++L+ ++ + +D T N G + DLPG
Sbjct: 1 LADVGLVGFPSVGKSTLLSVVSSAK--PKIADYHFTTLVPNLGMVETDDGRSFVMADLPG 58
Query: 148 Y--GFAYAKEEVKDAWEELVSISYRNFWSCTC 177
G +
Sbjct: 59 LIEGAHQGVGLGHQFLRHIERTRVIVHVIDMS 90
>d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 400
Score = 49.4 bits (117), Expect = 5e-08
Identities = 19/100 (19%), Positives = 34/100 (34%), Gaps = 8/100 (8%)
Query: 64 ERIEENIFRNKLEFFAAAKVSSSFPAPD--LPEIAFAGRSNVGKSSMLNALTRQWGVVRT 121
IE + ++ + +S + D + +A G + GKSS +N L
Sbjct: 27 NLIELRMRAGNIQL-TNSAISDALKEIDSSVLNVAVTGETGSGKSSFINTLRGIGNEEEG 85
Query: 122 SDKPGLTQTI-----NFFKLGTKLCLVDLPGYGFAYAKEE 156
+ K G+ + + DLPG G +
Sbjct: 86 AAKTGVVEVTMERHPYKHPNIPNVVFWDLPGIGSTNFPPD 125
>d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and
middle domains {Thermotoga maritima [TaxId: 2336]}
Length = 171
Score = 46.7 bits (109), Expect = 2e-07
Identities = 12/40 (30%), Positives = 20/40 (50%), Gaps = 1/40 (2%)
Query: 95 IAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFF 134
+ GR NVGKS++ N L ++ D+ G+T+
Sbjct: 3 VLIVGRPNVGKSTLFNKLVKKK-KAIVEDEEGVTRDPVQD 41
>d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain
{Escherichia coli [TaxId: 562]}
Length = 179
Score = 46.3 bits (108), Expect = 3e-07
Identities = 17/35 (48%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
Query: 95 IAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQ 129
IA GR NVGKS++LN L Q + TS K T+
Sbjct: 8 IAIVGRPNVGKSTLLNKLLGQK-ISITSRKAQTTR 41
>d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and
middle domains {Thermotoga maritima [TaxId: 2336]}
Length = 186
Score = 45.1 bits (105), Expect = 7e-07
Identities = 24/109 (22%), Positives = 42/109 (38%), Gaps = 18/109 (16%)
Query: 90 PDLPE---IAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKL---GTKLCLV 143
P++ + +A GR NVGKS++ NA+ + S PG T+ ++ G K V
Sbjct: 3 PEITDAIKVAIVGRPNVGKSTLFNAILNKE-RALVSPIPGTTRDPVDDEVFIDGRKYVFV 61
Query: 144 DLPGYGFAYAKEEVKDAWEELVSISYRNFWSCTCFLIYIFYTNVIILYF 192
D G + V +S + I +V+++
Sbjct: 62 DTAGLR-----------RKSRVEPRTVEKYSNYRVVDSIEKADVVVIVL 99
>d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga
maritima [TaxId: 2336]}
Length = 160
Score = 44.2 bits (103), Expect = 1e-06
Identities = 21/92 (22%), Positives = 37/92 (40%), Gaps = 9/92 (9%)
Query: 95 IAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKL---GTKLCLVDLPGYGFA 151
+ G+ NVGKS++LN L + +D PG T+ + ++ G +VD G
Sbjct: 3 MVIVGKPNVGKSTLLNRLLNE-DRAIVTDIPGTTRDVISEEIVIRGILFRIVDTAGV--- 58
Query: 152 YAKEEVKDAWEELVSISYRNFWSCTCFLIYIF 183
+ E D E L ++++
Sbjct: 59 --RSETNDLVERLGIERTLQEIEKADIVLFVL 88
>d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus
thermophilus [TaxId: 274]}
Length = 178
Score = 44.0 bits (102), Expect = 2e-06
Identities = 15/86 (17%), Positives = 30/86 (34%), Gaps = 1/86 (1%)
Query: 95 IAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYAK 154
+A G+ NVGKS++LN L V S +P T+ L + +
Sbjct: 8 VAIVGKPNVGKSTLLNNLLGVK-VAPISPRPQTTRKRLRGILTEGRRQIVFVDTPGLHKP 66
Query: 155 EEVKDAWEELVSISYRNFWSCTCFLI 180
+ + + + +++
Sbjct: 67 MDALGEFMDQEVYEALADVNAVVWVV 92
>d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE
(MnmE), G domain {Escherichia coli [TaxId: 562]}
Length = 161
Score = 42.0 bits (97), Expect = 8e-06
Identities = 19/84 (22%), Positives = 28/84 (33%)
Query: 95 IAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYAK 154
+ AGR N GKSS+LNAL + + T + + L + G A
Sbjct: 4 VVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLREAS 63
Query: 155 EEVKDAWEELVSISYRNFWSCTCF 178
+EV+ E
Sbjct: 64 DEVERIGIERAWQEIEQADRVLFM 87
>d1puja_ c.37.1.8 (A:) Probable GTPase YlqF {Bacillus subtilis
[TaxId: 1423]}
Length = 273
Score = 42.9 bits (100), Expect = 8e-06
Identities = 21/62 (33%), Positives = 38/62 (61%), Gaps = 1/62 (1%)
Query: 95 IAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYAK 154
G NVGKS+++N L ++ + +T D+PG+T + + K+G +L L+D PG + +
Sbjct: 115 ALIIGIPNVGKSTLINRLAKKN-IAKTGDRPGITTSQQWVKVGKELELLDTPGILWPKFE 173
Query: 155 EE 156
+E
Sbjct: 174 DE 175
>d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor
beta-subunit {Baker's yeast (Saccharomyces cerevisiae)
[TaxId: 4932]}
Length = 209
Score = 40.0 bits (92), Expect = 6e-05
Identities = 15/60 (25%), Positives = 20/60 (33%), Gaps = 6/60 (10%)
Query: 93 PEIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAY 152
P I AG N GK+S+L LT S +P + V L +
Sbjct: 4 PSIIIAGPQNSGKTSLLTLLTTD------SVRPTVVSQEPLSAADYDGSGVTLVDFPGHV 57
>d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34
{Garden pea (Pisum sativum) [TaxId: 3888]}
Length = 257
Score = 39.4 bits (91), Expect = 1e-04
Identities = 11/37 (29%), Positives = 16/37 (43%), Gaps = 1/37 (2%)
Query: 95 IAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTI 131
I G+ VGKSS +N++ + VV S
Sbjct: 35 ILVMGKGGVGKSSTVNSIIGE-RVVSISPFQSEGPRP 70
>d1jwyb_ c.37.1.8 (B:) Dynamin G domain {Dictyostelium discoideum
[TaxId: 44689]}
Length = 306
Score = 36.7 bits (84), Expect = 0.001
Identities = 10/25 (40%), Positives = 15/25 (60%)
Query: 91 DLPEIAFAGRSNVGKSSMLNALTRQ 115
DLP+I G + GKSS+L + +
Sbjct: 23 DLPQIVVVGSQSSGKSSVLENIVGR 47
>d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo
sapiens), ARL5A [TaxId: 9606]}
Length = 177
Score = 35.7 bits (81), Expect = 0.001
Identities = 8/84 (9%), Positives = 23/84 (27%)
Query: 95 IAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYAK 154
+ G N GK+++L + V + + I + + +
Sbjct: 18 VIIVGLDNAGKTTILYQFSMNEVVHTSPTIGSNVEEIVINNTRFLMWDIGGQESLRSSWN 77
Query: 155 EEVKDAWEELVSISYRNFWSCTCF 178
+ +V + + +
Sbjct: 78 TYYTNTEFVIVVVDSTDRERISVT 101
>d2akab1 c.37.1.8 (B:6-304) Dynamin G domain {Rat (Rattus
norvegicus) [TaxId: 10116]}
Length = 299
Score = 36.0 bits (82), Expect = 0.002
Identities = 11/24 (45%), Positives = 14/24 (58%)
Query: 91 DLPEIAFAGRSNVGKSSMLNALTR 114
DLP+IA G + GKSS+L
Sbjct: 25 DLPQIAVVGGQSAGKSSVLENFVG 48
>d1wxqa1 c.37.1.8 (A:1-319) GTP-binding protein PH0525 {Pyrococcus
horikoshii [TaxId: 53953]}
Length = 319
Score = 34.5 bits (78), Expect = 0.005
Identities = 10/21 (47%), Positives = 13/21 (61%)
Query: 94 EIAFAGRSNVGKSSMLNALTR 114
EI G+ NVGKS+ +A T
Sbjct: 2 EIGVVGKPNVGKSTFFSAATL 22
>d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId:
10116]}
Length = 169
Score = 33.7 bits (76), Expect = 0.006
Identities = 15/56 (26%), Positives = 20/56 (35%), Gaps = 3/56 (5%)
Query: 95 IAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGL---TQTINFFKLGTKLCLVDLPG 147
I G S+VGK+S L G+ +TI KL + D G
Sbjct: 8 ILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAG 63
>d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId:
9606]}
Length = 177
Score = 33.7 bits (76), Expect = 0.007
Identities = 15/56 (26%), Positives = 21/56 (37%), Gaps = 3/56 (5%)
Query: 95 IAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKL---GTKLCLVDLPG 147
I G S VGKSS+L T + G+ + + KL + D G
Sbjct: 10 ILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAG 65
>d1g7sa4 c.37.1.8 (A:1-227) Initiation factor IF2/eIF5b, N-terminal
(G) domain {Archaeon Methanobacterium
thermoautotrophicum [TaxId: 145262]}
Length = 227
Score = 33.9 bits (76), Expect = 0.008
Identities = 6/28 (21%), Positives = 14/28 (50%)
Query: 93 PEIAFAGRSNVGKSSMLNALTRQWGVVR 120
P ++ G + GK+++L+ + R
Sbjct: 6 PIVSVLGHVDHGKTTLLDHIRGSAVASR 33
>d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 194
Score = 32.9 bits (74), Expect = 0.011
Identities = 18/95 (18%), Positives = 31/95 (32%), Gaps = 16/95 (16%)
Query: 95 IAFAGRSNVGKSSMLNALTRQ---WGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFA 151
+ G S VGKS +L + + T +T+ KL + D G
Sbjct: 9 LLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAG---- 64
Query: 152 YAKEEVKDAWEELVSISYRNFWSCTCFLIYIFYTN 186
++ + + S YR +I T+
Sbjct: 65 ------QERFRTITSSYYRG---SHGIIIVYDVTD 90
>d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo
sapiens), ARL1 [TaxId: 9606]}
Length = 169
Score = 32.8 bits (73), Expect = 0.012
Identities = 6/21 (28%), Positives = 9/21 (42%)
Query: 95 IAFAGRSNVGKSSMLNALTRQ 115
I G GK+++L L
Sbjct: 8 ILILGLDGAGKTTILYRLQVG 28
>d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId:
9606]}
Length = 175
Score = 32.5 bits (73), Expect = 0.014
Identities = 14/92 (15%), Positives = 27/92 (29%), Gaps = 10/92 (10%)
Query: 95 IAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYAK 154
+ G S VGKS++L+ TR + + G+ ++ K +
Sbjct: 7 VVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTA----- 61
Query: 155 EEVKDAWEELVSISYRNFWSCTCFLIYIFYTN 186
E I+ + L+
Sbjct: 62 -----GQERYRRITSAYYRGAVGALLVYDIAK 88
>d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus
musculus), ARL2 [TaxId: 10090]}
Length = 165
Score = 32.3 bits (72), Expect = 0.016
Identities = 5/21 (23%), Positives = 10/21 (47%)
Query: 95 IAFAGRSNVGKSSMLNALTRQ 115
+ G N GK+++L +
Sbjct: 5 LLMLGLDNAGKTTILKKFNGE 25
>d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor
beta-subunit {Mouse (Mus musculus) [TaxId: 10090]}
Length = 207
Score = 32.3 bits (72), Expect = 0.023
Identities = 5/21 (23%), Positives = 9/21 (42%)
Query: 95 IAFAGRSNVGKSSMLNALTRQ 115
+ F G + GK+ + L
Sbjct: 3 VLFVGLCDSGKTLLFVRLLTG 23
>d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId:
10090]}
Length = 173
Score = 32.0 bits (72), Expect = 0.023
Identities = 13/56 (23%), Positives = 19/56 (33%), Gaps = 3/56 (5%)
Query: 95 IAFAGRSNVGKSSMLNALTRQWGVVRTSDKPG---LTQTINFFKLGTKLCLVDLPG 147
+ G S VGK+ +L + G +TI KL + D G
Sbjct: 9 LLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAG 64
>d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus
musculus), ARL3 [TaxId: 10090]}
Length = 176
Score = 31.9 bits (71), Expect = 0.028
Identities = 8/27 (29%), Positives = 12/27 (44%)
Query: 95 IAFAGRSNVGKSSMLNALTRQWGVVRT 121
I G N GK+++L L + T
Sbjct: 19 ILLLGLDNAGKTTLLKQLASEDISHIT 45
>d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 166
Score = 31.6 bits (70), Expect = 0.033
Identities = 7/21 (33%), Positives = 12/21 (57%)
Query: 95 IAFAGRSNVGKSSMLNALTRQ 115
+ F G N GK+++L+ L
Sbjct: 3 LLFLGLDNAGKTTLLHMLKND 23
>d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo
sapiens), ARF1 [TaxId: 9606]}
Length = 160
Score = 31.5 bits (70), Expect = 0.036
Identities = 10/54 (18%), Positives = 17/54 (31%), Gaps = 2/54 (3%)
Query: 95 IAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGY 148
I G GK+++L L G + T+ + D+ G
Sbjct: 3 ILMVGLDAAGKTTILYKLKL--GEIVTTIPTIGFNVETVEYKNISFTVWDVGGQ 54
>d1wb1a4 c.37.1.8 (A:1-179) Elongation factor SelB, N-terminal
domain {Methanococcus maripaludis [TaxId: 39152]}
Length = 179
Score = 31.6 bits (70), Expect = 0.039
Identities = 5/27 (18%), Positives = 10/27 (37%)
Query: 95 IAFAGRSNVGKSSMLNALTRQWGVVRT 121
+ G + GK+++ LT
Sbjct: 8 LGIFGHIDHGKTTLSKVLTEIASTSAH 34
>d1ni3a1 c.37.1.8 (A:11-306) YchF GTP-binding protein N-terminal
domain {Fission yeast (Schizosaccharomyces pombe)
[TaxId: 4896]}
Length = 296
Score = 31.7 bits (71), Expect = 0.040
Identities = 10/35 (28%), Positives = 17/35 (48%), Gaps = 1/35 (2%)
Query: 94 EIAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLT 128
+ G NVGKS+ A+T+ + ++ P T
Sbjct: 12 KTGIVGMPNVGKSTFFRAITKS-VLGNPANYPYAT 45
>d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId:
9606]}
Length = 166
Score = 31.4 bits (70), Expect = 0.043
Identities = 11/92 (11%), Positives = 26/92 (28%), Gaps = 10/92 (10%)
Query: 95 IAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYAK 154
G VGKS +L+ T + + G+ ++ + + +
Sbjct: 7 YIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTA----- 61
Query: 155 EEVKDAWEELVSISYRNFWSCTCFLIYIFYTN 186
E +++ + L+ T
Sbjct: 62 -----GQERFRAVTRSYYRGAAGALMVYDITR 88
>d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide
biosynthesis protein MobB {Escherichia coli [TaxId:
562]}
Length = 170
Score = 31.1 bits (69), Expect = 0.043
Identities = 9/25 (36%), Positives = 14/25 (56%)
Query: 92 LPEIAFAGRSNVGKSSMLNALTRQW 116
+P +AFA S GK+++L L
Sbjct: 2 IPLLAFAAWSGTGKTTLLKKLIPAL 26
>d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo
sapiens), ARL8A [TaxId: 9606]}
Length = 164
Score = 31.2 bits (69), Expect = 0.049
Identities = 4/21 (19%), Positives = 9/21 (42%)
Query: 95 IAFAGRSNVGKSSMLNALTRQ 115
+ G GK++ +N +
Sbjct: 5 LTLVGLQYSGKTTFVNVIASG 25
>d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal
domain {Thermotoga maritima [TaxId: 2336]}
Length = 225
Score = 31.2 bits (70), Expect = 0.054
Identities = 20/60 (33%), Positives = 26/60 (43%), Gaps = 8/60 (13%)
Query: 96 AFAGRSNVGKSSMLNALTRQWGVVRTSD-------KPGLTQTINFFKLGTKLCLVDLPGY 148
AG S VGKSS+LNA+ +R S+ T T K +VD PG+
Sbjct: 99 TMAGLSGVGKSSLLNAINPGL-KLRVSEVSEKLQRGRHTTTTAQLLKFDFGGYVVDTPGF 157
>d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId:
9606]}
Length = 171
Score = 30.9 bits (69), Expect = 0.055
Identities = 15/95 (15%), Positives = 31/95 (32%), Gaps = 16/95 (16%)
Query: 95 IAFAGRSNVGKSSMLNALTRQWGVVRTSDKPG---LTQTINFFKLGTKLCLVDLPGYGFA 151
I G + VGK+ ++ T+ G + +T+ KL + D G
Sbjct: 8 IVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAG---- 63
Query: 152 YAKEEVKDAWEELVSISYRNFWSCTCFLIYIFYTN 186
++ + + YR+ ++ T
Sbjct: 64 ------QERFRSITQSYYRS---ANALILTYDITC 89
>d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 175
Score = 30.0 bits (66), Expect = 0.098
Identities = 6/25 (24%), Positives = 14/25 (56%)
Query: 91 DLPEIAFAGRSNVGKSSMLNALTRQ 115
++ ++ G S VGK+S+++
Sbjct: 1 NILKVIILGDSGVGKTSLMHRYVND 25
>d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 166
Score = 30.1 bits (67), Expect = 0.10
Identities = 14/56 (25%), Positives = 18/56 (32%), Gaps = 3/56 (5%)
Query: 95 IAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTK---LCLVDLPG 147
I G S VGKS +L G+ I + K L + D G
Sbjct: 5 ILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAG 60
>d1jala1 c.37.1.8 (A:1-278) YchF GTP-binding protein N-terminal
domain {Haemophilus influenzae [TaxId: 727]}
Length = 278
Score = 30.3 bits (68), Expect = 0.11
Identities = 10/21 (47%), Positives = 13/21 (61%)
Query: 95 IAFAGRSNVGKSSMLNALTRQ 115
G NVGKS++ NALT+
Sbjct: 5 CGIVGLPNVGKSTLFNALTKA 25
>d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal
domain {Bacillus subtilis [TaxId: 1423]}
Length = 231
Score = 30.1 bits (67), Expect = 0.13
Identities = 23/92 (25%), Positives = 38/92 (41%), Gaps = 10/92 (10%)
Query: 95 IAFAGRSNVGKSSMLNALTRQW----GVVRTSDKPGLTQTINFFKLGTKL-CLVDLPGYG 149
FAG+S VGKSS+LNA++ + + G T + + T + D PG+
Sbjct: 100 TVFAGQSGVGKSSLLNAISPELGLRTNEISEHLGRGKHTTRHVELIHTSGGLVADTPGFS 159
Query: 150 FA----YAKEEVKDAWEELVSISYR-NFWSCT 176
+EE+ + ++ S F C
Sbjct: 160 SLEFTDIEEEELGYTFPDIREKSSSCKFRGCL 191
>d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus)
[TaxId: 10029]}
Length = 186
Score = 29.7 bits (65), Expect = 0.15
Identities = 8/90 (8%), Positives = 23/90 (25%)
Query: 95 IAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYAK 154
+ F G N GK+++L+ L ++ + + + K
Sbjct: 16 LVFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPTSEELTIAGMTFTTFDLGGHIQARRVWK 75
Query: 155 EEVKDAWEELVSISYRNFWSCTCFLIYIFY 184
+ + + + +
Sbjct: 76 NYLPAINGIVFLVDCADHERLLESKEELDS 105
>d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 184
Score = 29.7 bits (65), Expect = 0.15
Identities = 7/21 (33%), Positives = 12/21 (57%)
Query: 95 IAFAGRSNVGKSSMLNALTRQ 115
+ G S VGK+S++N +
Sbjct: 5 VIILGDSGVGKTSLMNQYVNK 25
>d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId:
9606]}
Length = 170
Score = 29.1 bits (64), Expect = 0.25
Identities = 11/57 (19%), Positives = 20/57 (35%), Gaps = 4/57 (7%)
Query: 95 IAFAGRSNVGKSSMLNALTR----QWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPG 147
+ G S VGK+ +L + T + ++ + KL + D G
Sbjct: 9 VMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDTAG 65
>d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId:
10090]}
Length = 164
Score = 28.9 bits (63), Expect = 0.27
Identities = 7/20 (35%), Positives = 10/20 (50%)
Query: 95 IAFAGRSNVGKSSMLNALTR 114
+ G VGKSSM+ +
Sbjct: 5 MVVVGNGAVGKSSMIQRYCK 24
>d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance
regulator, CFTR, nucleotide-binding domain {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 281
Score = 29.1 bits (65), Expect = 0.32
Identities = 13/73 (17%), Positives = 31/73 (42%), Gaps = 7/73 (9%)
Query: 95 IAFAGRSNVGKSSMLNALTRQW----GVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGF 150
+A G + GK+S+L + + G+++ S + ++ GT + + +G
Sbjct: 65 LAITGSTGSGKTSLLMLILGELEASEGIIKHSGRVSFCSQFSWIMPGT---IKENIIFGV 121
Query: 151 AYAKEEVKDAWEE 163
+Y + K +
Sbjct: 122 SYDEYRYKSVVKA 134
>d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 169
Score = 28.5 bits (62), Expect = 0.40
Identities = 7/26 (26%), Positives = 12/26 (46%), Gaps = 2/26 (7%)
Query: 91 DLPE--IAFAGRSNVGKSSMLNALTR 114
+LP + G VGKS++ +
Sbjct: 1 NLPTYKLVVVGDGGVGKSALTIQFFQ 26
>d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId:
9606]}
Length = 174
Score = 28.3 bits (62), Expect = 0.41
Identities = 11/56 (19%), Positives = 20/56 (35%), Gaps = 3/56 (5%)
Query: 95 IAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTK---LCLVDLPG 147
G + GKS +L+ + ++ G+ +G K L + D G
Sbjct: 8 FLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAG 63
>d2c78a3 c.37.1.8 (A:9-212) Elongation factor Tu (EF-Tu), N-terminal
(G) domain {Thermus thermophilus [TaxId: 274]}
Length = 204
Score = 28.4 bits (63), Expect = 0.41
Identities = 12/72 (16%), Positives = 22/72 (30%), Gaps = 18/72 (25%)
Query: 95 IAFAGRSNVGKSSMLNALTRQWGVVRTSDK---------------PGLTQTINFFKL--- 136
+ G + GK+++ ALT + + G+T +
Sbjct: 6 VGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDIDKAPEERARGITINTAHVEYETA 65
Query: 137 GTKLCLVDLPGY 148
VD PG+
Sbjct: 66 KRHYSHVDCPGH 77
>d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo
sapiens) [TaxId: 9606]}
Length = 172
Score = 28.2 bits (61), Expect = 0.42
Identities = 6/20 (30%), Positives = 9/20 (45%)
Query: 95 IAFAGRSNVGKSSMLNALTR 114
+ G VGKS++ N
Sbjct: 6 VVLIGEQGVGKSTLANIFAG 25
>d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId:
9606]}
Length = 168
Score = 28.2 bits (61), Expect = 0.44
Identities = 5/20 (25%), Positives = 8/20 (40%)
Query: 95 IAFAGRSNVGKSSMLNALTR 114
+ G VGKS++
Sbjct: 4 VLLLGAPGVGKSALARIFGG 23
>d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide
biosynthesis protein MobB {Bacillus stearothermophilus
[TaxId: 1422]}
Length = 165
Score = 27.9 bits (61), Expect = 0.49
Identities = 3/22 (13%), Positives = 8/22 (36%)
Query: 95 IAFAGRSNVGKSSMLNALTRQW 116
G + GK++++
Sbjct: 4 WQVVGYKHSGKTTLMEKWVAAA 25
>d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId:
10090]}
Length = 165
Score = 28.1 bits (61), Expect = 0.51
Identities = 11/54 (20%), Positives = 17/54 (31%)
Query: 95 IAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGY 148
I G SNVGK+ + RT G+ + + + L
Sbjct: 5 IIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDT 58
>d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId:
9606]}
Length = 173
Score = 27.7 bits (60), Expect = 0.66
Identities = 5/20 (25%), Positives = 9/20 (45%)
Query: 95 IAFAGRSNVGKSSMLNALTR 114
+ G VGKS++ +
Sbjct: 9 LVVVGGGGVGKSALTIQFIQ 28
>d1bifa1 c.37.1.7 (A:37-249)
6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase,
kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 213
Score = 28.0 bits (61), Expect = 0.67
Identities = 9/29 (31%), Positives = 12/29 (41%), Gaps = 2/29 (6%)
Query: 95 IAFAGRSNVGKSSMLNALTR--QWGVVRT 121
I G GK+ + LTR + V T
Sbjct: 5 IVMVGLPARGKTYISKKLTRYLNFIGVPT 33
>d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens)
[TaxId: 9606]}
Length = 166
Score = 27.6 bits (60), Expect = 0.73
Identities = 6/20 (30%), Positives = 10/20 (50%)
Query: 95 IAFAGRSNVGKSSMLNALTR 114
+ G VGKS++ L +
Sbjct: 6 LVVVGAGGVGKSALTIQLIQ 25
>d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo
sapiens) [TaxId: 9606]}
Length = 167
Score = 27.4 bits (59), Expect = 0.83
Identities = 8/20 (40%), Positives = 10/20 (50%)
Query: 95 IAFAGRSNVGKSSMLNALTR 114
IA G +VGKSS+
Sbjct: 7 IAILGYRSVGKSSLTIQFVE 26
>d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]}
Length = 183
Score = 27.3 bits (59), Expect = 0.89
Identities = 6/20 (30%), Positives = 9/20 (45%)
Query: 95 IAFAGRSNVGKSSMLNALTR 114
G VGK+ +L + T
Sbjct: 8 CVVVGDGAVGKTCLLISYTT 27
>d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]}
Length = 177
Score = 27.3 bits (59), Expect = 0.96
Identities = 4/20 (20%), Positives = 9/20 (45%)
Query: 95 IAFAGRSNVGKSSMLNALTR 114
+ G GK+ +L ++
Sbjct: 5 LVIVGDGACGKTCLLIVNSK 24
>d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId:
9606]}
Length = 171
Score = 26.9 bits (58), Expect = 1.1
Identities = 7/20 (35%), Positives = 11/20 (55%)
Query: 95 IAFAGRSNVGKSSMLNALTR 114
+A G VGKSS++ +
Sbjct: 5 VAVFGAGGVGKSSLVLRFVK 24
>d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]}
Length = 167
Score = 26.8 bits (58), Expect = 1.2
Identities = 5/20 (25%), Positives = 8/20 (40%)
Query: 95 IAFAGRSNVGKSSMLNALTR 114
+ G VGKS++
Sbjct: 6 VVVLGSGGVGKSALTVQFVT 25
>d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId:
9606]}
Length = 185
Score = 26.9 bits (58), Expect = 1.2
Identities = 6/30 (20%), Positives = 12/30 (40%)
Query: 85 SSFPAPDLPEIAFAGRSNVGKSSMLNALTR 114
+ P + + G VGK+ +L +
Sbjct: 2 AHGPGALMLKCVVVGDGAVGKTCLLMSYAN 31
>d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein
Aq_1292 {Aquifex aeolicus [TaxId: 63363]}
Length = 178
Score = 26.9 bits (58), Expect = 1.2
Identities = 10/93 (10%), Positives = 23/93 (24%), Gaps = 7/93 (7%)
Query: 95 IAFAGRSNVGKSSMLNALTRQW----GVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGF 150
I G VGK++++ + + T + + G ++ + F
Sbjct: 3 IIITGEPGVGKTTLVKKIVERLGKRAIGFWTEEVRDPET---KKRTGFRIITTEGKKKIF 59
Query: 151 AYAKEEVKDAWEELVSISYRNFWSCTCFLIYIF 183
+ K L +
Sbjct: 60 SSKFFTSKKLVGSYGVNVQYFEELAIPILERAY 92
>d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId:
9606]}
Length = 186
Score = 26.8 bits (58), Expect = 1.3
Identities = 7/21 (33%), Positives = 10/21 (47%)
Query: 95 IAFAGRSNVGKSSMLNALTRQ 115
+ G S VGK++ L T
Sbjct: 8 LLALGDSGVGKTTFLYRYTDN 28
>d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA,
C-terminal domain {Lactococcus lactis [TaxId: 1358]}
Length = 242
Score = 27.1 bits (60), Expect = 1.3
Identities = 11/20 (55%), Positives = 14/20 (70%)
Query: 95 IAFAGRSNVGKSSMLNALTR 114
IAFAG S GKS++ + L R
Sbjct: 31 IAFAGPSGGGKSTIFSLLER 50
>d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin
(Saguinus oedipus) [TaxId: 9490]}
Length = 168
Score = 26.8 bits (58), Expect = 1.4
Identities = 5/20 (25%), Positives = 8/20 (40%)
Query: 95 IAFAGRSNVGKSSMLNALTR 114
+ G VGKS++
Sbjct: 7 VIMVGSGGVGKSALTLQFMY 26
>d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]}
Length = 174
Score = 26.8 bits (58), Expect = 1.4
Identities = 7/21 (33%), Positives = 10/21 (47%)
Query: 95 IAFAGRSNVGKSSMLNALTRQ 115
+ G VGKSS++N
Sbjct: 9 VILLGDGGVGKSSLMNRYVTN 29
>d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId:
10090]}
Length = 167
Score = 26.9 bits (58), Expect = 1.4
Identities = 6/21 (28%), Positives = 10/21 (47%)
Query: 95 IAFAGRSNVGKSSMLNALTRQ 115
+ G + VGKSS++
Sbjct: 7 VCLLGDTGVGKSSIMWRFVED 27
>d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter
MsbA, C-terminal domain {Salmonella typhimurium [TaxId:
90371]}
Length = 253
Score = 27.1 bits (60), Expect = 1.4
Identities = 9/28 (32%), Positives = 16/28 (57%)
Query: 95 IAFAGRSNVGKSSMLNALTRQWGVVRTS 122
+A GRS GKS++ + +TR + +
Sbjct: 44 VALVGRSGSGKSTIASLITRFYDIDEGH 71
>d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId:
9606]}
Length = 164
Score = 26.5 bits (57), Expect = 1.5
Identities = 6/21 (28%), Positives = 11/21 (52%)
Query: 95 IAFAGRSNVGKSSMLNALTRQ 115
+ F G +VGK+S++
Sbjct: 3 LVFLGEQSVGKTSLITRFMYD 23
>d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export
ATP-binding/permease protein SAV1866 {Staphylococcus
aureus [TaxId: 1280]}
Length = 255
Score = 26.7 bits (59), Expect = 1.6
Identities = 9/20 (45%), Positives = 14/20 (70%)
Query: 95 IAFAGRSNVGKSSMLNALTR 114
+AF G S GKS+++N + R
Sbjct: 47 VAFVGMSGGGKSTLINLIPR 66
>d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 170
Score = 26.6 bits (57), Expect = 1.6
Identities = 6/20 (30%), Positives = 10/20 (50%)
Query: 95 IAFAGRSNVGKSSMLNALTR 114
+ G + VGKSS++
Sbjct: 6 LVLLGEAAVGKSSIVLRFVS 25
>d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]}
Length = 170
Score = 26.5 bits (57), Expect = 1.6
Identities = 3/20 (15%), Positives = 7/20 (35%)
Query: 95 IAFAGRSNVGKSSMLNALTR 114
+ G GK++ +
Sbjct: 6 LVLVGDGGTGKTTFVKRHLT 25
>d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human
(Homo sapiens) [TaxId: 9606]}
Length = 175
Score = 26.5 bits (57), Expect = 1.6
Identities = 7/26 (26%), Positives = 13/26 (50%), Gaps = 2/26 (7%)
Query: 92 LPE--IAFAGRSNVGKSSMLNALTRQ 115
+PE + G + GKSS+++
Sbjct: 3 IPELRLGVLGDARSGKSSLIHRFLTG 28
>d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId:
9606]}
Length = 171
Score = 26.5 bits (57), Expect = 1.7
Identities = 5/20 (25%), Positives = 9/20 (45%)
Query: 95 IAFAGRSNVGKSSMLNALTR 114
+ G VGKS++ +
Sbjct: 8 LVVVGGGGVGKSALTIQFIQ 27
>d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]}
Length = 191
Score = 26.5 bits (57), Expect = 1.7
Identities = 6/20 (30%), Positives = 9/20 (45%)
Query: 95 IAFAGRSNVGKSSMLNALTR 114
G VGK+ +L + T
Sbjct: 6 CVVVGDGAVGKTCLLISYTT 25
>d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId:
10090]}
Length = 179
Score = 26.5 bits (57), Expect = 1.7
Identities = 6/21 (28%), Positives = 11/21 (52%)
Query: 95 IAFAGRSNVGKSSMLNALTRQ 115
I G S GK+++L+ +
Sbjct: 5 IVVVGDSQCGKTALLHVFAKD 25
>d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein
{Escherichia coli [TaxId: 562]}
Length = 241
Score = 26.8 bits (59), Expect = 1.7
Identities = 8/22 (36%), Positives = 12/22 (54%)
Query: 95 IAFAGRSNVGKSSMLNALTRQW 116
I GRS GKS++ + R +
Sbjct: 32 IGIVGRSGSGKSTLTKLIQRFY 53
>d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth
inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]}
Length = 168
Score = 26.5 bits (57), Expect = 1.9
Identities = 7/20 (35%), Positives = 12/20 (60%)
Query: 95 IAFAGRSNVGKSSMLNALTR 114
+A GR+ VGKS+++
Sbjct: 5 LAIFGRAGVGKSALVVRFLT 24
>d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo
sapiens), ARF6 [TaxId: 9606]}
Length = 173
Score = 26.5 bits (57), Expect = 1.9
Identities = 6/22 (27%), Positives = 9/22 (40%)
Query: 95 IAFAGRSNVGKSSMLNALTRQW 116
I G GK+++L L
Sbjct: 15 ILMLGLDAAGKTTILYKLKLGQ 36
>d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]}
Length = 170
Score = 26.1 bits (56), Expect = 2.0
Identities = 7/20 (35%), Positives = 11/20 (55%)
Query: 95 IAFAGRSNVGKSSMLNALTR 114
+ G S VGKSS++ +
Sbjct: 9 LVLLGESAVGKSSLVLRFVK 28
>d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase
{Streptomyces venezuelae [TaxId: 54571]}
Length = 178
Score = 26.1 bits (56), Expect = 2.0
Identities = 11/89 (12%), Positives = 22/89 (24%)
Query: 95 IAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYAK 154
I G S+ GKS ++ L + K+ + ++ G
Sbjct: 6 IILNGGSSAGKSGIVRCLQSVLPEPWLAFGVDSLIEAMPLKMQSAEGGIEFDADGGVSIG 65
Query: 155 EEVKDAWEELVSISYRNFWSCTCFLIYIF 183
E + + +I
Sbjct: 66 PEFRALEGAWAEGVVAMARAGARIIIDDV 94
>d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC
domain {Human (Homo sapiens) [TaxId: 9606]}
Length = 251
Score = 26.4 bits (58), Expect = 2.1
Identities = 6/22 (27%), Positives = 10/22 (45%)
Query: 95 IAFAGRSNVGKSSMLNALTRQW 116
A G + GKS++ L +
Sbjct: 43 TALVGPNGSGKSTVAALLQNLY 64
>d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId:
9606]}
Length = 173
Score = 26.4 bits (57), Expect = 2.1
Identities = 7/21 (33%), Positives = 10/21 (47%)
Query: 95 IAFAGRSNVGKSSMLNALTRQ 115
G + VGKS +L T +
Sbjct: 6 YIIIGDTGVGKSCLLLQFTDK 26
>d1cr2a_ c.37.1.11 (A:) Gene 4 protein (g4p, DNA primase), helicase
domain {Bacteriophage T7 [TaxId: 10760]}
Length = 277
Score = 26.5 bits (57), Expect = 2.2
Identities = 13/64 (20%), Positives = 23/64 (35%), Gaps = 16/64 (25%)
Query: 63 RERIEENIFRNKLEFFAAAKVSSSFPAPDLPE----------IAFAGRSNVGKSSMLNAL 112
RERI E++ + + + S + + I S +GKS+ +
Sbjct: 2 RERIREHLSSEE----SVGLLFSGCT--GINDKTLGARGGEVIMVTSGSGMGKSTFVRQQ 55
Query: 113 TRQW 116
QW
Sbjct: 56 ALQW 59
>d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast
(Saccharomyces cerevisiae), ARL1 [TaxId: 4932]}
Length = 182
Score = 26.1 bits (56), Expect = 2.5
Identities = 13/90 (14%), Positives = 23/90 (25%), Gaps = 5/90 (5%)
Query: 95 IAFAGRSNVGKSSMLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYAK 154
I G GK+++L L V T N L K +++ G +
Sbjct: 20 ILILGLDGAGKTTILYRLQIGEVVTTKP-----TIGFNVETLSYKNLKLNVWDLGGQTSI 74
Query: 155 EEVKDAWEELVSISYRNFWSCTCFLIYIFY 184
+ + S +
Sbjct: 75 RPYWRCYYADTAAVIFVVDSTDKDRMSTAS 104
>d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]}
Length = 167
Score = 25.7 bits (55), Expect = 2.7
Identities = 5/20 (25%), Positives = 9/20 (45%)
Query: 95 IAFAGRSNVGKSSMLNALTR 114
+ G VGKS++ +
Sbjct: 6 LVVLGSGGVGKSALTVQFVQ 25
>d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR,
ribosylnicotinamide kinase domain {Haemophilus
influenzae [TaxId: 727]}
Length = 192
Score = 25.8 bits (55), Expect = 3.0
Identities = 7/23 (30%), Positives = 12/23 (52%)
Query: 95 IAFAGRSNVGKSSMLNALTRQWG 117
+A G + GKS ++N L +
Sbjct: 10 VAILGGESSGKSVLVNKLAAVFN 32
>d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId:
9606]}
Length = 167
Score = 25.7 bits (55), Expect = 3.2
Identities = 5/20 (25%), Positives = 9/20 (45%)
Query: 95 IAFAGRSNVGKSSMLNALTR 114
+ G VGK+S++
Sbjct: 6 VVLLGEGCVGKTSLVLRYCE 25
>d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit)
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 200
Score = 25.2 bits (54), Expect = 4.4
Identities = 6/19 (31%), Positives = 8/19 (42%)
Query: 95 IAFAGRSNVGKSSMLNALT 113
I G GKS+ L +
Sbjct: 5 ILLLGAGESGKSTFLKQMR 23
>d2bcjq2 c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha subunit)
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 200
Score = 25.3 bits (54), Expect = 5.4
Identities = 4/20 (20%), Positives = 8/20 (40%)
Query: 95 IAFAGRSNVGKSSMLNALTR 114
+ G GKS+ + +
Sbjct: 5 LLLLGTGESGKSTFIKQMRI 24
>d1n0ua2 c.37.1.8 (A:3-343) Elongation factor 2 (eEF-2), N-terminal
(G) domain {Baker's yeast (Saccharomyces cerevisiae)
[TaxId: 4932]}
Length = 341
Score = 25.1 bits (54), Expect = 5.6
Identities = 5/26 (19%), Positives = 16/26 (61%)
Query: 95 IAFAGRSNVGKSSMLNALTRQWGVVR 120
++ + GKS++ ++L ++ G++
Sbjct: 20 MSVIAHVDHGKSTLTDSLVQRAGIIS 45
>d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit)
{Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 195
Score = 24.5 bits (52), Expect = 7.6
Identities = 4/19 (21%), Positives = 9/19 (47%)
Query: 95 IAFAGRSNVGKSSMLNALT 113
+ G GKS+++ +
Sbjct: 5 LLLLGAGESGKSTIVKQMK 23
>d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter
{Thermotoga maritima, TM1139 [TaxId: 2336]}
Length = 240
Score = 24.5 bits (53), Expect = 7.9
Identities = 5/20 (25%), Positives = 11/20 (55%)
Query: 95 IAFAGRSNVGKSSMLNALTR 114
+ G + GK++ L+A+
Sbjct: 35 VTLIGANGAGKTTTLSAIAG 54
>d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine
permease {Salmonella typhimurium [TaxId: 90371]}
Length = 258
Score = 24.8 bits (54), Expect = 8.2
Identities = 7/20 (35%), Positives = 10/20 (50%)
Query: 95 IAFAGRSNVGKSSMLNALTR 114
I+ G S GKS+ L +
Sbjct: 31 ISIIGSSGSGKSTFLRCINF 50
>d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus
furiosus [TaxId: 2261]}
Length = 200
Score = 24.5 bits (53), Expect = 8.8
Identities = 5/20 (25%), Positives = 13/20 (65%)
Query: 95 IAFAGRSNVGKSSMLNALTR 114
+ F G + +GK+++L ++
Sbjct: 30 VNFHGPNGIGKTTLLKTIST 49
>d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit)
{Cow (Bos taurus) [TaxId: 9913]}
Length = 221
Score = 24.3 bits (52), Expect = 9.4
Identities = 4/19 (21%), Positives = 9/19 (47%)
Query: 95 IAFAGRSNVGKSSMLNALT 113
+ G GKS+++ +
Sbjct: 9 LLLLGAGESGKSTIVKQMR 27
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.322 0.137 0.407
Gapped
Lambda K H
0.267 0.0467 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 707,588
Number of extensions: 31948
Number of successful extensions: 207
Number of sequences better than 10.0: 1
Number of HSP's gapped: 207
Number of HSP's successfully gapped: 103
Length of query: 192
Length of database: 2,407,596
Length adjustment: 80
Effective length of query: 112
Effective length of database: 1,309,196
Effective search space: 146629952
Effective search space used: 146629952
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 50 (23.7 bits)