Query 029515
Match_columns 192
No_of_seqs 110 out of 410
Neff 5.7
Searched_HMMs 29240
Date Mon Mar 25 23:22:37 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029515.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/029515hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2kpa_A ARNO(375-400); hydrolas 15.3 31 0.001 19.2 -0.2 14 173-186 7-20 (26)
2 4b19_A PEPA1; toxin, toxin apo 9.8 1.4E+02 0.0047 17.1 1.4 14 169-182 17-30 (30)
3 2a1i_A DNA excision repair pro 9.1 15 0.00053 28.5 -3.7 17 77-93 113-129 (146)
4 3rfr_C PMOC; membrane, oxidore 7.8 5.3E+02 0.018 21.5 4.9 55 130-184 35-93 (256)
5 1bde_A VPR protein; AIDS, HIV, 6.8 4E+02 0.014 15.6 2.6 20 13-32 3-22 (35)
6 3im4_C Dual specificity A kina 5.7 2E+02 0.0068 17.8 0.9 9 81-89 17-25 (45)
7 2rdd_B UPF0092 membrane protei 4.9 5.4E+02 0.018 14.6 2.5 10 171-180 16-25 (37)
8 3fap_B FRAP, FKBP12-rapamycin 4.8 3.6E+02 0.012 18.8 2.0 32 27-58 28-60 (94)
9 3h8k_B Autocrine motility fact 4.4 3E+02 0.01 15.3 1.0 9 175-183 9-17 (28)
10 1yew_C Particulate methane mon 4.0 9.4E+02 0.032 20.3 4.2 55 130-184 62-120 (289)
No 1
>2kpa_A ARNO(375-400); hydrolase; NMR {Synthetic} PDB: 2kpb_A
Probab=15.25 E-value=31 Score=19.22 Aligned_cols=14 Identities=21% Similarity=0.401 Sum_probs=11.1
Q ss_pred HHHHHHHchhhchh
Q 029515 173 SHMLKQRGSKLGKR 186 (192)
Q Consensus 173 ~hMl~QRkK~l~~~ 186 (192)
-+|++.|||++..+
T Consensus 7 Ydml~~RKkKi~~~ 20 (26)
T 2kpa_A 7 YEMLAARKKRISVK 20 (26)
T ss_dssp HHHHTCTHHHHHCH
T ss_pred HHHHHHHHHHhccc
Confidence 38999999998543
No 2
>4b19_A PEPA1; toxin, toxin apoptotic peptide, apoptosis; NMR {Staphylococcus aureus}
Probab=9.78 E-value=1.4e+02 Score=17.08 Aligned_cols=14 Identities=36% Similarity=0.598 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHchh
Q 029515 169 IKLYSHMLKQRGSK 182 (192)
Q Consensus 169 ~~ly~hMl~QRkK~ 182 (192)
.-+|+|-++.|.|+
T Consensus 17 valF~hWL~~r~~k 30 (30)
T 4b19_A 17 IAFFSYWLSRRNTK 30 (30)
T ss_dssp HHHHHHHHHHHSCC
T ss_pred HHHHHHHHHhccCC
Confidence 46789999998763
No 3
>2a1i_A DNA excision repair protein ERCC-1; XPF, central domain, DNA repair, endonuclease, DNA binding protein; HET: DNA; 1.90A {Homo sapiens} SCOP: c.52.1.20 PDB: 2jnw_A* 2jpd_A*
Probab=9.13 E-value=15 Score=28.49 Aligned_cols=17 Identities=35% Similarity=0.383 Sum_probs=14.4
Q ss_pred HHHHHHHHhhhhcchhH
Q 029515 77 FITFLAWCLIEVIRYPF 93 (192)
Q Consensus 77 ~~l~~aWsl~EviRY~y 93 (192)
.++++|||.-|.-||-=
T Consensus 113 ~TLiLawS~eEaa~Yle 129 (146)
T 2a1i_A 113 CTLILAWSPEEAGRYLE 129 (146)
T ss_dssp CEEEEESSHHHHHHHHH
T ss_pred CEEEEECCHHHHHHHHH
Confidence 46789999999999953
No 4
>3rfr_C PMOC; membrane, oxidoreductase; 2.68A {Methylocystis SP} PDB: 3chx_C
Probab=7.84 E-value=5.3e+02 Score=21.54 Aligned_cols=55 Identities=5% Similarity=-0.028 Sum_probs=34.9
Q ss_pred HHhccchhhhcccccccCCCcchHHHH----HHHHHHHhhhhHHHHHHHHHHHHchhhc
Q 029515 130 NQAFPYMKEKNIFANFFAGLPFSYYNV----VQVVFVMYPFAWIKLYSHMLKQRGSKLG 184 (192)
Q Consensus 130 ~~alp~~~~~~~~s~~mP~~~f~~~~~----l~~~l~~yipg~~~ly~hMl~QRkK~l~ 184 (192)
+..+-.+++.-.++..|...+..|+.+ +..=+++-+...-.+++++.|-|.+.+.
T Consensus 35 y~~~r~Yqq~faw~~GLDs~~PeF~~yWm~ll~~e~~l~~~~~~~~~g~lWkTRdr~~~ 93 (256)
T 3rfr_C 35 YLIVRIYEQVFGWRAGLDSFAPEFQTYWMSILWTEIPLELVSGLGLAGYLWKTRDRNVD 93 (256)
T ss_dssp HHHHHHHHHHHHTTTSSCTTSHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHTCCTTCT
T ss_pred HHHHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHheeecCcchh
Confidence 333334444334444555555566654 4445556666788999999999999983
No 5
>1bde_A VPR protein; AIDS, HIV, viral protein, VPR fragment, helix; NMR {Synthetic} SCOP: j.11.1.1 PDB: 1dsj_A
Probab=6.83 E-value=4e+02 Score=15.63 Aligned_cols=20 Identities=40% Similarity=0.556 Sum_probs=16.3
Q ss_pred cchhHhHhHHHHHHHHHHHH
Q 029515 13 AGTFASAGEIIWILQTAAFL 32 (192)
Q Consensus 13 ~~~~~~~~~~l~~~Q~~a~l 32 (192)
.|+|+.++...++.|-+-++
T Consensus 3 GDTw~GveaiiriLQq~Lf~ 22 (35)
T 1bde_A 3 GDTWAGVEAIIRILQQLLFI 22 (35)
T ss_dssp CHHHHHHHHHHHHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHHHHH
Confidence 47899999999999976553
No 6
>3im4_C Dual specificity A kinase-anchoring protein 2; four-helix bundle, acetylation, CAMP, CAMP-binding, disulfide bond, nucleotide-binding; 2.29A {Homo sapiens} PDB: 3tmh_D
Probab=5.72 E-value=2e+02 Score=17.79 Aligned_cols=9 Identities=44% Similarity=0.984 Sum_probs=6.8
Q ss_pred HHHHhhhhc
Q 029515 81 LAWCLIEVI 89 (192)
Q Consensus 81 ~aWsl~Evi 89 (192)
+||-++|+|
T Consensus 17 MAWqIA~MI 25 (45)
T 3im4_C 17 LAWKIAKMI 25 (45)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 578888776
No 7
>2rdd_B UPF0092 membrane protein YAJC; drug resistance, multidrug efflux, transporter, antiporter, novel transmembrane helix, ACRB, inner membrane; HET: AIC; 3.50A {Escherichia coli}
Probab=4.92 E-value=5.4e+02 Score=14.60 Aligned_cols=10 Identities=20% Similarity=0.507 Sum_probs=4.0
Q ss_pred HHHHHHHHHc
Q 029515 171 LYSHMLKQRG 180 (192)
Q Consensus 171 ly~hMl~QRk 180 (192)
+|.-|.|-.+
T Consensus 16 fYFl~iRPQ~ 25 (37)
T 2rdd_B 16 FYFMILRPQQ 25 (37)
T ss_dssp HHHHTHHHHH
T ss_pred HHHHHhhhHH
Confidence 3334444333
No 8
>3fap_B FRAP, FKBP12-rapamycin associated protein; complex, gene therapy, cell cycle; HET: ARD; 1.85A {Homo sapiens} SCOP: a.24.7.1 PDB: 2fap_B* 2rse_B 1nsg_B* 4fap_B* 1aue_A 2gaq_A 1fap_B*
Probab=4.80 E-value=3.6e+02 Score=18.85 Aligned_cols=32 Identities=25% Similarity=0.152 Sum_probs=24.1
Q ss_pred HHHHHHHHHHhhhCC-CCCCcchhHHHHHhhhh
Q 029515 27 QTAAFLEVVHGAVGI-LPSGVWLPFMQWCGRTL 58 (192)
Q Consensus 27 Q~~a~lEi~Ha~~Gl-vrS~~~~t~~Qv~sR~~ 58 (192)
..+++||-+|..+.- -.+.-=++|.|.+||-.
T Consensus 28 ~m~~~L~pLh~~l~~~peT~~E~sF~~~fG~~L 60 (94)
T 3fap_B 28 GMFEVLEPLHAMMERGPQTLKETSFNQAYGRDL 60 (94)
T ss_dssp HHHHHHHHHHHHHHHCCCSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHH
Confidence 567899999999864 33455578899998864
No 9
>3h8k_B Autocrine motility factor receptor, isoform 2; alpha beta, all alpha, ligase, UBL conjugation pathway, endo reticulum, membrane, metal-binding; 1.80A {Homo sapiens} PDB: 3fsh_C
Probab=4.39 E-value=3e+02 Score=15.29 Aligned_cols=9 Identities=56% Similarity=0.689 Sum_probs=6.0
Q ss_pred HHHHHchhh
Q 029515 175 MLKQRGSKL 183 (192)
Q Consensus 175 Ml~QRkK~l 183 (192)
|+++||..+
T Consensus 9 ~Lq~Rk~~m 17 (28)
T 3h8k_B 9 MLVQRKDEL 17 (28)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 566777666
No 10
>1yew_C Particulate methane monooxygenase subunit C2; membrane protein, beta barrel, oxidoreductase; 2.80A {Methylococcus capsulatus} PDB: 3rgb_C
Probab=3.98 E-value=9.4e+02 Score=20.35 Aligned_cols=55 Identities=9% Similarity=0.038 Sum_probs=34.7
Q ss_pred HHhccchhhhcccccccCCCcchHHHH----HHHHHHHhhhhHHHHHHHHHHHHchhhc
Q 029515 130 NQAFPYMKEKNIFANFFAGLPFSYYNV----VQVVFVMYPFAWIKLYSHMLKQRGSKLG 184 (192)
Q Consensus 130 ~~alp~~~~~~~~s~~mP~~~f~~~~~----l~~~l~~yipg~~~ly~hMl~QRkK~l~ 184 (192)
+..+-.+++.-.++..|...+..|+-+ +..-+++-+...-.+.+++.|-|.+.+.
T Consensus 62 yi~~r~Yq~~faws~GLDS~~PeF~~YWM~ll~~e~~le~~~~~~l~g~lWkTRdr~l~ 120 (289)
T 1yew_C 62 YLWVRWYEGVYGWSAGLDSFAPEFETYWMNFLYTEIVLEIVTASILWGYLWKTRDRNLA 120 (289)
T ss_dssp HHHHHHHHHHHHTTTSSCTTSHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHTCCSCCS
T ss_pred HHHHHHHHHHHHHhhcccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHheeeecccccc
Confidence 333334444334444555555566543 4555566666788999999999999883
Done!