Query 029515
Match_columns 192
No_of_seqs 110 out of 410
Neff 5.7
Searched_HMMs 13730
Date Mon Mar 25 23:22:47 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029515.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/029515hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2e74h1 f.23.27.1 (H:3-29) Pet 11.3 59 0.0043 16.5 1.6 16 74-89 6-21 (27)
2 d1k1va_ a.37.1.1 (A:) Mafg {Mo 10.3 40 0.0029 19.2 0.8 11 176-186 29-39 (41)
3 d2a1ia1 c.52.1.20 (A:99-227) D 8.3 8 0.00058 27.7 -3.7 16 77-92 96-111 (129)
4 d1s99a_ d.58.48.2 (A:) Putativ 7.2 69 0.005 23.9 1.1 29 114-142 110-138 (189)
5 d2db7a1 a.273.1.1 (A:3-57) Hai 6.0 65 0.0047 19.4 0.3 13 79-91 15-27 (55)
6 d1rqja_ a.128.1.1 (A:) Farnesy 5.3 1.6E+02 0.012 22.3 2.5 16 24-39 65-80 (299)
7 d1v4ea_ a.128.1.1 (A:) Octopre 4.6 2E+02 0.014 21.6 2.5 16 24-39 54-69 (280)
8 d1rtra_ a.128.1.1 (A:) Farnesy 4.3 1.8E+02 0.013 21.8 2.1 15 25-39 63-77 (290)
9 d1l8na2 d.92.2.2 (A:4-142) alp 4.1 94 0.0069 21.1 0.1 6 107-112 5-10 (139)
10 d2q80a1 a.128.1.1 (A:6-296) Ge 3.9 2.4E+02 0.017 21.1 2.5 18 24-41 40-57 (291)
No 1
>d2e74h1 f.23.27.1 (H:3-29) PetN subunit of the cytochrome b6f complex {Mastigocladus laminosus [TaxId: 83541]}
Probab=11.31 E-value=59 Score=16.47 Aligned_cols=16 Identities=13% Similarity=0.441 Sum_probs=10.8
Q ss_pred chHHHHHHHHHhhhhc
Q 029515 74 PSLFITFLAWCLIEVI 89 (192)
Q Consensus 74 ~~~~~l~~aWsl~Evi 89 (192)
|...+.++.||++-++
T Consensus 6 wv~llvvftwsiamvv 21 (27)
T d2e74h1 6 WVALLVVFTWSIAMVV 21 (27)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HhHHHHHhhheeeeEE
Confidence 3445677889987653
No 2
>d1k1va_ a.37.1.1 (A:) Mafg {Mouse (Mus musculus) [TaxId: 10090]}
Probab=10.31 E-value=40 Score=19.18 Aligned_cols=11 Identities=55% Similarity=0.664 Sum_probs=7.6
Q ss_pred HHHHchhhchh
Q 029515 176 LKQRGSKLGKR 186 (192)
Q Consensus 176 l~QRkK~l~~~ 186 (192)
+||||+.|+.|
T Consensus 29 lKqrRRTLKNR 39 (41)
T d1k1va_ 29 LKQRRRTLKNR 39 (41)
T ss_dssp HHHHHHHHTTS
T ss_pred HHHHHHhhhcC
Confidence 67888877543
No 3
>d2a1ia1 c.52.1.20 (A:99-227) DNA excision repair protein ERCC-1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=8.31 E-value=8 Score=27.68 Aligned_cols=16 Identities=38% Similarity=0.488 Sum_probs=13.9
Q ss_pred HHHHHHHHhhhhcchh
Q 029515 77 FITFLAWCLIEVIRYP 92 (192)
Q Consensus 77 ~~l~~aWsl~EviRY~ 92 (192)
.++++|||.-|.-||-
T Consensus 96 ~TLilaws~eEaa~Yl 111 (129)
T d2a1ia1 96 CTLILAWSPEEAGRYL 111 (129)
T ss_dssp CEEEEESSHHHHHHHH
T ss_pred CEEEEEcCHHHHHHHH
Confidence 4678999999999994
No 4
>d1s99a_ d.58.48.2 (A:) Putative thiamin/HMP-binding protein YkoF {Bacillus subtilis [TaxId: 1423]}
Probab=7.17 E-value=69 Score=23.89 Aligned_cols=29 Identities=28% Similarity=0.373 Sum_probs=23.8
Q ss_pred ccccccchhhHHHHHHHHhccchhhhccc
Q 029515 114 FIPLYPIGVLGEMLLLNQAFPYMKEKNIF 142 (192)
Q Consensus 114 FivLYPlGv~~E~~~i~~alp~~~~~~~~ 142 (192)
=+-|||+|.-=-|--||..+.+.++.+.|
T Consensus 110 qfsLYpmg~~d~m~~Iy~~id~~k~~G~~ 138 (189)
T d1s99a_ 110 QFALYPMNEPDYMGLIMEAVDIAKAQGTF 138 (189)
T ss_dssp EEEEEETTCTTHHHHHHHHHHHHHHTTCE
T ss_pred eEEEEecCCccHHHHHHHHHHHHHHcCCC
Confidence 34599999988888999999998887644
No 5
>d2db7a1 a.273.1.1 (A:3-57) Hairy/enhancer-of-split related with YRPW motif protein 1; HESR-1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=6.00 E-value=65 Score=19.35 Aligned_cols=13 Identities=46% Similarity=0.616 Sum_probs=10.4
Q ss_pred HHHHHHhhhhcch
Q 029515 79 TFLAWCLIEVIRY 91 (192)
Q Consensus 79 l~~aWsl~EviRY 91 (192)
+-+.=|.+||-||
T Consensus 15 ~GF~ECa~EV~Ry 27 (55)
T d2db7a1 15 LGFRECLAEVARY 27 (55)
T ss_dssp HHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHH
Confidence 4566788999998
No 6
>d1rqja_ a.128.1.1 (A:) Farnesyl diphosphate synthase (geranyltranstransferase) {Escherichia coli [TaxId: 562]}
Probab=5.32 E-value=1.6e+02 Score=22.29 Aligned_cols=16 Identities=25% Similarity=0.200 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHhhh
Q 029515 24 WILQTAAFLEVVHGAV 39 (192)
Q Consensus 24 ~~~Q~~a~lEi~Ha~~ 39 (192)
...+.++++|.+|++.
T Consensus 65 ~~~~~A~aiEllH~as 80 (299)
T d1rqja_ 65 TLDAPAAAVECIHAYS 80 (299)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHH
Confidence 4567788999999763
No 7
>d1v4ea_ a.128.1.1 (A:) Octoprenyl-diphosphate synthase {Thermotoga maritima [TaxId: 2336]}
Probab=4.58 E-value=2e+02 Score=21.57 Aligned_cols=16 Identities=38% Similarity=0.277 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHhhh
Q 029515 24 WILQTAAFLEVVHGAV 39 (192)
Q Consensus 24 ~~~Q~~a~lEi~Ha~~ 39 (192)
.....++.+|++|++.
T Consensus 54 ~~~~~AaaiEliH~as 69 (280)
T d1v4ea_ 54 DAISSLAALELVHLAS 69 (280)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4566778899999875
No 8
>d1rtra_ a.128.1.1 (A:) Farnesyl diphosphate synthase (geranyltranstransferase) {Staphylococcus aureus [TaxId: 1280]}
Probab=4.31 E-value=1.8e+02 Score=21.80 Aligned_cols=15 Identities=27% Similarity=0.326 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHhhh
Q 029515 25 ILQTAAFLEVVHGAV 39 (192)
Q Consensus 25 ~~Q~~a~lEi~Ha~~ 39 (192)
..+.++.+|++|++.
T Consensus 63 ~~~~A~avEllH~as 77 (290)
T d1rtra_ 63 GMKSAIALEMIHTYS 77 (290)
T ss_dssp GHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHH
Confidence 356778899999874
No 9
>d1l8na2 d.92.2.2 (A:4-142) alpha-D-glucuronidase, N-terminal domain {Bacillus stearothermophilus [TaxId: 1422]}
Probab=4.11 E-value=94 Score=21.07 Aligned_cols=6 Identities=50% Similarity=1.110 Sum_probs=4.3
Q ss_pred hhcccc
Q 029515 107 TYLRYT 112 (192)
Q Consensus 107 ~WLRYt 112 (192)
-||||.
T Consensus 5 ~WLrY~ 10 (139)
T d1l8na2 5 CWLRYE 10 (139)
T ss_dssp TTCCCC
T ss_pred hhcCCC
Confidence 488885
No 10
>d2q80a1 a.128.1.1 (A:6-296) Geranylgeranyl pyrophosphate synthetase {Human (Homo sapiens) [TaxId: 9606]}
Probab=3.90 E-value=2.4e+02 Score=21.09 Aligned_cols=18 Identities=17% Similarity=0.121 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHhhhCC
Q 029515 24 WILQTAAFLEVVHGAVGI 41 (192)
Q Consensus 24 ~~~Q~~a~lEi~Ha~~Gl 41 (192)
...+.++++|.+|++.=+
T Consensus 40 ~~~~~a~aiEllH~asLi 57 (291)
T d2q80a1 40 KLQIIIEVTEMLHNASLL 57 (291)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 455677889999988643
Done!