BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 029516
(192 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2ICJ|A Chain A, The Crystal Structure Of Human Isopentenyl Diphophate
Isomerase
pdb|2ICK|A Chain A, Human Isopentenyl Diphophate Isomerase Complexed With
Substrate Analog
Length = 233
Score = 202 bits (513), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 107/190 (56%), Positives = 145/190 (76%), Gaps = 5/190 (2%)
Query: 2 EKIESLNLLHRAFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENA 61
E IE LLHRAFSVFLFN++ +LLLQQRS K+TFP +TNTCCSHPL +EL E +A
Sbjct: 49 ENIEK-GLLHRAFSVFLFNTENKLLLQQRSDAKITFPGCFTNTCCSHPLSNPAELEESDA 107
Query: 62 LGVRNAAQRKLLDELGICAEDVPVDEFTPLGRILYKAPSDGKWGEHELDYLLFIVRDVSV 121
LGVR AAQR+L ELGI E+VP +E L RI YKA SDG WGEHE+DY+L + ++V++
Sbjct: 108 LGVRRAAQRRLKAELGIPLEEVPPEEINYLTRIHYKAQSDGIWGEHEIDYILLVRKNVTL 167
Query: 122 NPNPDEVAEYKYVNREQLKELLRKADAGEEGLKLSPWFRLVVDNFLFKWWDHLEKGTLNE 181
NP+P+E+ Y YV++E+LKELL+KA +GE +K++PWF+++ FLFKWWD+L LN+
Sbjct: 168 NPDPNEIKSYCYVSKEELKELLKKAASGE--IKITPWFKIIAATFLFKWWDNLNH--LNQ 223
Query: 182 VIDMKTIHKL 191
+D + I+++
Sbjct: 224 FVDHEKIYRM 233
>pdb|2DHO|A Chain A, Crystal Structure Of Human Ipp Isomerase I In Space Group
P212121
Length = 235
Score = 201 bits (510), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 107/190 (56%), Positives = 144/190 (75%), Gaps = 5/190 (2%)
Query: 2 EKIESLNLLHRAFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENA 61
E IE LLHRAFSVFLFN++ +LLLQQRS K+TFP +TNTCCSHPL +EL E +A
Sbjct: 51 ENIEK-GLLHRAFSVFLFNTENKLLLQQRSDAKITFPGCFTNTCCSHPLSNPAELEESDA 109
Query: 62 LGVRNAAQRKLLDELGICAEDVPVDEFTPLGRILYKAPSDGKWGEHELDYLLFIVRDVSV 121
LGVR AAQR+L ELGI E+VP +E L RI YKA SDG WGEHE+DY+L + +V++
Sbjct: 110 LGVRRAAQRRLKAELGIPLEEVPPEEINYLTRIHYKAQSDGIWGEHEIDYILLVRMNVTL 169
Query: 122 NPNPDEVAEYKYVNREQLKELLRKADAGEEGLKLSPWFRLVVDNFLFKWWDHLEKGTLNE 181
NP+P+E+ Y YV++E+LKELL+KA +GE +K++PWF+++ FLFKWWD+L LN+
Sbjct: 170 NPDPNEIKSYCYVSKEELKELLKKAASGE--IKITPWFKIIAATFLFKWWDNLNH--LNQ 225
Query: 182 VIDMKTIHKL 191
+D + I+++
Sbjct: 226 FVDHEKIYRM 235
>pdb|2I6K|A Chain A, Crystal Structure Of Human Type I Ipp Isomerase Complexed
With A Substrate Analog
pdb|2I6K|B Chain B, Crystal Structure Of Human Type I Ipp Isomerase Complexed
With A Substrate Analog
Length = 235
Score = 199 bits (506), Expect = 8e-52, Method: Compositional matrix adjust.
Identities = 107/189 (56%), Positives = 143/189 (75%), Gaps = 5/189 (2%)
Query: 2 EKIESLNLLHRAFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENA 61
E IE LLHRAFSVFLFN++ +LLLQQRS K+TFP +TNTCCSHPL +EL E +A
Sbjct: 51 ENIEK-GLLHRAFSVFLFNTENKLLLQQRSDAKITFPGCFTNTCCSHPLSNPAELEESDA 109
Query: 62 LGVRNAAQRKLLDELGICAEDVPVDEFTPLGRILYKAPSDGKWGEHELDYLLFIVRDVSV 121
LGVR AAQR+L ELGI E+VP +E L RI YKA SDG WGEHE+DY+L + +V++
Sbjct: 110 LGVRRAAQRRLKAELGIPLEEVPPEEINYLTRIHYKAQSDGIWGEHEIDYILLVRXNVTL 169
Query: 122 NPNPDEVAEYKYVNREQLKELLRKADAGEEGLKLSPWFRLVVDNFLFKWWDHLEKGTLNE 181
NP+P+E+ Y YV++E+LKELL+KA +GE +K++PWF+++ FLFKWWD+L LN+
Sbjct: 170 NPDPNEIKSYCYVSKEELKELLKKAASGE--IKITPWFKIIAATFLFKWWDNLNH--LNQ 225
Query: 182 VIDMKTIHK 190
+D + I++
Sbjct: 226 FVDHEKIYR 234
>pdb|2PNY|A Chain A, Structure Of Human Isopentenyl-Diphosphate Delta-Isomerase
2
Length = 246
Score = 163 bits (412), Expect = 6e-41, Method: Compositional matrix adjust.
Identities = 88/190 (46%), Positives = 129/190 (67%), Gaps = 5/190 (2%)
Query: 2 EKIESLNLLHRAFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENA 61
E IE LLHRAFSV LFN+K +L+QQRS TKVTFP +T++C SHPLY +EL E++A
Sbjct: 62 ENIEK-GLLHRAFSVVLFNTKNRILIQQRSDTKVTFPGYFTDSCSSHPLYNPAELEEKDA 120
Query: 62 LGVRNAAQRKLLDELGICAEDVPVDEFTPLGRILYKAPSDGKWGEHELDYLLFIVRDVSV 121
+GVR AAQR+L ELGI E + ++ + +KA SD WGEHE+ YLL + ++V++
Sbjct: 121 IGVRRAAQRRLQAELGIPGEQISPEDIVFMTIYHHKAKSDRIWGEHEICYLLLVRKNVTL 180
Query: 122 NPNPDEVAEYKYVNREQLKELLRKADAGEEGLKLSPWFRLVVDNFLFKWWDHLEKGTLNE 181
NP+P E Y+++E+L ELL + GE +K++PW R + + FL++WW HL+ T
Sbjct: 181 NPDPSETKSILYLSQEELWELLEREARGE--VKVTPWLRTIAERFLYRWWPHLDDVT--P 236
Query: 182 VIDMKTIHKL 191
+++ IH++
Sbjct: 237 FVELHKIHRV 246
>pdb|1HZT|A Chain A, Crystal Structure Of Metal-Free Isopentenyl
Diphosphate:dimethylallyl Diphosphate Isomerase
Length = 190
Score = 63.2 bits (152), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 49/156 (31%), Positives = 75/156 (48%), Gaps = 18/156 (11%)
Query: 10 LHRAFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQ 69
LH AFS +LFN+K +LL+ +R+ +K +P VWTN+ C HP ES +A
Sbjct: 31 LHLAFSSWLFNAKGQLLVTRRALSKKAWPGVWTNSVCGHPQLGESN---------EDAVI 81
Query: 70 RKLLDELGICAEDVPVDEFTPLGRILYKAPSDGKWGEHELDYLLFIVRDVSVNPNPDEVA 129
R+ ELG+ E P + P R Y+A E+E+ + ++ N DEV
Sbjct: 82 RRCRYELGV--EITPPESIYPDFR--YRATDPSGIVENEVCPVFAARTTSALQINDDEVM 137
Query: 130 EYKYVNREQLKELLRKADAGEEGLKLSPWFRLVVDN 165
+Y++ + L ++L DA SPW + N
Sbjct: 138 DYQWCD---LADVLHGIDATP--WAFSPWMVMQATN 168
>pdb|1X84|A Chain A, Ipp Isomerase (Wt) Reacted With (S)-Bromohydrine Of Ipp
pdb|1X84|B Chain B, Ipp Isomerase (Wt) Reacted With (S)-Bromohydrine Of Ipp
Length = 189
Score = 63.2 bits (152), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 49/156 (31%), Positives = 75/156 (48%), Gaps = 18/156 (11%)
Query: 10 LHRAFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQ 69
LH AFS +LFN+K +LL+ +R+ +K +P VWTN+ C HP ES +A
Sbjct: 31 LHLAFSSWLFNAKGQLLVTRRALSKKAWPGVWTNSVCGHPQLGESN---------EDAVI 81
Query: 70 RKLLDELGICAEDVPVDEFTPLGRILYKAPSDGKWGEHELDYLLFIVRDVSVNPNPDEVA 129
R+ ELG+ E P + P R Y+A E+E+ + ++ N DEV
Sbjct: 82 RRCRYELGV--EITPPESIYPDFR--YRATDPSGIVENEVCPVFAARTTSALQINDDEVM 137
Query: 130 EYKYVNREQLKELLRKADAGEEGLKLSPWFRLVVDN 165
+Y++ + L ++L DA SPW + N
Sbjct: 138 DYQWCD---LADVLHGIDATP--WAFSPWMVMQATN 168
>pdb|1NFS|A Chain A, Structure And Mechanism Of Action Of
Isopentenylpyrophosphate-dimethylallylpyrophosphate
Isomerase: Complex With Nipp
pdb|1NFS|B Chain B, Structure And Mechanism Of Action Of
Isopentenylpyrophosphate-dimethylallylpyrophosphate
Isomerase: Complex With Nipp
pdb|1NFZ|A Chain A, Structure And Mechanism Of Action Of
Isopentenylpyrophosphate-Dimethylallylpyrophosphate
Isomerase: Complex With Eipp
pdb|1NFZ|B Chain B, Structure And Mechanism Of Action Of
Isopentenylpyrophosphate-Dimethylallylpyrophosphate
Isomerase: Complex With Eipp
pdb|1PPV|A Chain A, Isopentenylpyrophosphate-Dimethylallylpyrophosphate
Isomerase In Complex With The Bromohydrine Of Ipp
pdb|1PPV|B Chain B, Isopentenylpyrophosphate-Dimethylallylpyrophosphate
Isomerase In Complex With The Bromohydrine Of Ipp
pdb|1PPW|A Chain A, Isopentenylpyrophosphate-Dimethylallylpyrophosphate
Isomerase In Complex With The Bromohydrine Of Ipp
pdb|1PPW|B Chain B, Isopentenylpyrophosphate-Dimethylallylpyrophosphate
Isomerase In Complex With The Bromohydrine Of Ipp
pdb|1PVF|A Chain A, E.coli Ipp Isomerase In Complex With Diphosphate
pdb|1PVF|B Chain B, E.coli Ipp Isomerase In Complex With Diphosphate
pdb|2VNP|A Chain A, Monoclinic Form Of Idi-1
pdb|2VNP|B Chain B, Monoclinic Form Of Idi-1
pdb|2VNQ|A Chain A, Monoclinic Form Of Idi-1
pdb|2VNQ|B Chain B, Monoclinic Form Of Idi-1
Length = 183
Score = 63.2 bits (152), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 49/156 (31%), Positives = 75/156 (48%), Gaps = 18/156 (11%)
Query: 10 LHRAFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQ 69
LH AFS +LFN+K +LL+ +R+ +K +P VWTN+ C HP ES +A
Sbjct: 31 LHLAFSSWLFNAKGQLLVTRRALSKKAWPGVWTNSVCGHPQLGESN---------EDAVI 81
Query: 70 RKLLDELGICAEDVPVDEFTPLGRILYKAPSDGKWGEHELDYLLFIVRDVSVNPNPDEVA 129
R+ ELG+ E P + P R Y+A E+E+ + ++ N DEV
Sbjct: 82 RRCRYELGV--EITPPESIYPDFR--YRATDPSGIVENEVCPVFAARTTSALQINDDEVM 137
Query: 130 EYKYVNREQLKELLRKADAGEEGLKLSPWFRLVVDN 165
+Y++ + L ++L DA SPW + N
Sbjct: 138 DYQWCD---LADVLHGIDATP--WAFSPWMVMQATN 168
>pdb|1X83|A Chain A, Y104f Ipp Isomerase Reacted With (S)-Bromohydrine Of Ipp
pdb|1X83|B Chain B, Y104f Ipp Isomerase Reacted With (S)-Bromohydrine Of Ipp
Length = 189
Score = 62.0 bits (149), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 49/156 (31%), Positives = 74/156 (47%), Gaps = 18/156 (11%)
Query: 10 LHRAFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQ 69
LH AFS +LFN+K +LL+ +R+ +K +P VWTN+ C HP ES +A
Sbjct: 31 LHLAFSSWLFNAKGQLLVTRRALSKKAWPGVWTNSVCGHPQLGESN---------EDAVI 81
Query: 70 RKLLDELGICAEDVPVDEFTPLGRILYKAPSDGKWGEHELDYLLFIVRDVSVNPNPDEVA 129
R+ ELG+ E P + P R PS E+E+ + ++ N DEV
Sbjct: 82 RRCRYELGV--EITPPESIYPDFRFRATDPSGIV--ENEVCPVFAARTTSALQINDDEVM 137
Query: 130 EYKYVNREQLKELLRKADAGEEGLKLSPWFRLVVDN 165
+Y++ + L ++L DA SPW + N
Sbjct: 138 DYQWCD---LADVLHGIDATP--WAFSPWMVMQATN 168
>pdb|2G73|A Chain A, Y104f Mutant Type 1 Ipp Isomerase Complex With Eipp
pdb|2G73|B Chain B, Y104f Mutant Type 1 Ipp Isomerase Complex With Eipp
pdb|2G74|A Chain A, Y104f Mutant Of Type 1 Isopentenylpyrophosphate-
Dimethylallylpyrophosphate Isomerase
pdb|2G74|B Chain B, Y104f Mutant Of Type 1 Isopentenylpyrophosphate-
Dimethylallylpyrophosphate Isomerase
pdb|2B2K|A Chain A, Structure Of Y104f Idi-1 Mutant In Complex With Eipp
pdb|2B2K|B Chain B, Structure Of Y104f Idi-1 Mutant In Complex With Eipp
Length = 183
Score = 62.0 bits (149), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 49/156 (31%), Positives = 74/156 (47%), Gaps = 18/156 (11%)
Query: 10 LHRAFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQ 69
LH AFS +LFN+K +LL+ +R+ +K +P VWTN+ C HP ES +A
Sbjct: 31 LHLAFSSWLFNAKGQLLVTRRALSKKAWPGVWTNSVCGHPQLGESN---------EDAVI 81
Query: 70 RKLLDELGICAEDVPVDEFTPLGRILYKAPSDGKWGEHELDYLLFIVRDVSVNPNPDEVA 129
R+ ELG+ E P + P R PS E+E+ + ++ N DEV
Sbjct: 82 RRCRYELGV--EITPPESIYPDFRFRATDPSGIV--ENEVCPVFAARTTSALQINDDEVM 137
Query: 130 EYKYVNREQLKELLRKADAGEEGLKLSPWFRLVVDN 165
+Y++ + L ++L DA SPW + N
Sbjct: 138 DYQWCD---LADVLHGIDATP--WAFSPWMVMQATN 168
>pdb|1R67|A Chain A, Y104a Mutant Of E.coli Ipp Isomerase
Length = 190
Score = 61.6 bits (148), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 49/156 (31%), Positives = 74/156 (47%), Gaps = 18/156 (11%)
Query: 10 LHRAFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQ 69
LH AFS +LFN+K +LL+ +R+ +K +P VWTN+ C HP ES +A
Sbjct: 31 LHLAFSSWLFNAKGQLLVTRRALSKKAWPGVWTNSVCGHPQLGESN---------EDAVI 81
Query: 70 RKLLDELGICAEDVPVDEFTPLGRILYKAPSDGKWGEHELDYLLFIVRDVSVNPNPDEVA 129
R+ ELG+ E P + P R PS E+E+ + ++ N DEV
Sbjct: 82 RRCRYELGV--EITPPESIYPDFRARATDPSGIV--ENEVCPVFAARTTSALQINDDEVM 137
Query: 130 EYKYVNREQLKELLRKADAGEEGLKLSPWFRLVVDN 165
+Y++ + L ++L DA SPW + N
Sbjct: 138 DYQWCD---LADVLHGIDATP--WAFSPWMVMQATN 168
>pdb|1I9A|A Chain A, Structural Studies Of Cholesterol Biosynthesis: Mevalonate
5-Diphosphate Decarboxylase And Isopentenyl Diphosphate
Isomerase
pdb|1I9A|B Chain B, Structural Studies Of Cholesterol Biosynthesis: Mevalonate
5-Diphosphate Decarboxylase And Isopentenyl Diphosphate
Isomerase
Length = 182
Score = 61.6 bits (148), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 48/149 (32%), Positives = 73/149 (48%), Gaps = 18/149 (12%)
Query: 10 LHRAFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQ 69
LH AFS +LFN+K +LL+ +R+ +K +P VWTN+ C HP ES +A
Sbjct: 31 LHLAFSSWLFNAKGQLLVTRRALSKKAWPGVWTNSVCGHPQLGESN---------EDAVI 81
Query: 70 RKLLDELGICAEDVPVDEFTPLGRILYKAPSDGKWGEHELDYLLFIVRDVSVNPNPDEVA 129
R+ ELG+ E P + P R Y+A E+E+ + ++ N DEV
Sbjct: 82 RRCRYELGV--EITPPESIYPDFR--YRATDPSGIVENEVCPVFAARTTSALQINDDEVX 137
Query: 130 EYKYVNREQLKELLRKADAGEEGLKLSPW 158
+Y++ + L ++L DA SPW
Sbjct: 138 DYQWCD---LADVLHGIDATP--WAFSPW 161
>pdb|1Q54|A Chain A, Structure And Mechanism Of Action Of
Isopentenylpyrophosphate-Dimethylallylpyrophosphate
Isomerase: Complex With The Bromohydrine Of Ipp
pdb|1Q54|B Chain B, Structure And Mechanism Of Action Of
Isopentenylpyrophosphate-Dimethylallylpyrophosphate
Isomerase: Complex With The Bromohydrine Of Ipp
pdb|1OW2|A Chain A, Structure And Mechanism Of Action Of
Isopentenylpyrophosphate-Dimethylallylpyrophosphate
Isomerase: Complex Of C67a Mutant With Eipp
pdb|1OW2|B Chain B, Structure And Mechanism Of Action Of
Isopentenylpyrophosphate-Dimethylallylpyrophosphate
Isomerase: Complex Of C67a Mutant With Eipp
Length = 183
Score = 59.7 bits (143), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 48/156 (30%), Positives = 74/156 (47%), Gaps = 18/156 (11%)
Query: 10 LHRAFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQ 69
LH AFS +LFN+K +LL+ +R+ +K +P VWTN+ HP ES +A
Sbjct: 31 LHLAFSSWLFNAKGQLLVTRRALSKKAWPGVWTNSVAGHPQLGESN---------EDAVI 81
Query: 70 RKLLDELGICAEDVPVDEFTPLGRILYKAPSDGKWGEHELDYLLFIVRDVSVNPNPDEVA 129
R+ ELG+ E P + P R Y+A E+E+ + ++ N DEV
Sbjct: 82 RRCRYELGV--EITPPESIYPDFR--YRATDPSGIVENEVCPVFAARTTSALQINDDEVM 137
Query: 130 EYKYVNREQLKELLRKADAGEEGLKLSPWFRLVVDN 165
+Y++ + L ++L DA SPW + N
Sbjct: 138 DYQWCD---LADVLHGIDATP--WAFSPWMVMQATN 168
>pdb|1HX3|A Chain A, Crystal Structure Of E.Coli Isopentenyl
Diphosphate:dimethylallyl Diphosphate Isomerase
pdb|1HX3|B Chain B, Crystal Structure Of E.Coli Isopentenyl
Diphosphate:dimethylallyl Diphosphate Isomerase
Length = 190
Score = 59.7 bits (143), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 48/156 (30%), Positives = 74/156 (47%), Gaps = 18/156 (11%)
Query: 10 LHRAFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQ 69
LH AFS +LFN+K +LL+ +R+ +K +P VWTN+ HP ES +A
Sbjct: 31 LHLAFSSWLFNAKGQLLVTRRALSKKAWPGVWTNSVAGHPQLGESN---------EDAVI 81
Query: 70 RKLLDELGICAEDVPVDEFTPLGRILYKAPSDGKWGEHELDYLLFIVRDVSVNPNPDEVA 129
R+ ELG+ E P + P R Y+A E+E+ + ++ N DEV
Sbjct: 82 RRCRYELGV--EITPPESIYPDFR--YRATDPSGIVENEVCPVFAARTTSALQINDDEVM 137
Query: 130 EYKYVNREQLKELLRKADAGEEGLKLSPWFRLVVDN 165
+Y++ + L ++L DA SPW + N
Sbjct: 138 DYQWCD---LADVLHGIDATP--WAFSPWMVMQATN 168
>pdb|3HYQ|A Chain A, Crystal Structure Of Isopentenyl-Diphosphate
Delta-Isomerase From Salmonella Entericase
Length = 184
Score = 54.7 bits (130), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 44/126 (34%), Positives = 65/126 (51%), Gaps = 17/126 (13%)
Query: 10 LHRAFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQ 69
LH AFS +LFN +LL+ +RS +K +P VWTN+ C HP ++ E EE A
Sbjct: 34 LHLAFSCWLFNEDGQLLVTRRSLSKKAWPGVWTNSVCGHP--QQGETTEE-------AII 84
Query: 70 RKLLDELGICAEDVPVDEFTPL-GRILYKAPSDGKWGEHELDYLLFIVRDVSV-NPNPDE 127
R+ ELG V + + TP+ Y+A E+E+ +F R SV N +E
Sbjct: 85 RRCRFELG-----VEITDLTPVYPHFSYRATDPNGIVENEV-CPVFAARATSVLQVNSEE 138
Query: 128 VAEYKY 133
V +Y++
Sbjct: 139 VXDYQW 144
>pdb|1KSF|X Chain X, Crystal Structure Of Clpa, An Hsp100 Chaperone And
Regulator Of Clpap Protease: Structural Basis Of
Differences In Function Of The Two Aaa+ Atpase Domains
pdb|1R6B|X Chain X, High Resolution Crystal Structure Of Clpa
Length = 758
Score = 30.0 bits (66), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 16/39 (41%), Positives = 25/39 (64%), Gaps = 3/39 (7%)
Query: 147 DAGEEGLKL-SPWFRLVVDNFLFKWWDHLEKGTLNEVID 184
DA EE K+ +P FR +DN + W+DHL +++V+D
Sbjct: 627 DAMEEIKKIFTPEFRNRLDNII--WFDHLSTDVIHQVVD 663
>pdb|3REO|A Chain A, Monolignol O-Methyltransferase (Momt)
pdb|3REO|B Chain B, Monolignol O-Methyltransferase (Momt)
pdb|3REO|C Chain C, Monolignol O-Methyltransferase (Momt)
pdb|3REO|D Chain D, Monolignol O-Methyltransferase (Momt)
pdb|3TKY|A Chain A, Monolignol O-Methyltransferase (Momt)
pdb|3TKY|B Chain B, Monolignol O-Methyltransferase (Momt)
pdb|3TKY|C Chain C, Monolignol O-Methyltransferase (Momt)
pdb|3TKY|D Chain D, Monolignol O-Methyltransferase (Momt)
Length = 368
Score = 29.6 bits (65), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 27/108 (25%), Positives = 44/108 (40%), Gaps = 1/108 (0%)
Query: 73 LDELGICAEDVPVDEFTPLGRILYKAPSDGKWGEHELDYLLFIVRDVSV-NPNPDEVAEY 131
LD L I A+ VP + I + P+ LD +L ++ SV E+
Sbjct: 44 LDVLEIMAKSVPPSGYISPAEIAAQLPTTNPEAPVMLDRVLRLLASYSVVTYTLRELPSG 103
Query: 132 KYVNREQLKELLRKADAGEEGLKLSPWFRLVVDNFLFKWWDHLEKGTL 179
K L + + E+G+ L+P+ L D L + W +L+ L
Sbjct: 104 KVERLYGLAPVCKFLTKNEDGVSLAPFLLLATDKVLLEPWFYLKDAIL 151
>pdb|2ZUE|A Chain A, Crystal Structure Of Pyrococcus Horikoshii Arginyl-Trna
Synthetase Complexed With Trna(Arg) And An Atp Analog
(Anp)
pdb|2ZUF|A Chain A, Crystal Structure Of Pyrococcus Horikoshii Arginyl-Trna
Synthetase Complexed With Trna(Arg)
Length = 629
Score = 28.1 bits (61), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 37/152 (24%), Positives = 64/152 (42%), Gaps = 28/152 (18%)
Query: 6 SLNLLHRAFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVR 65
+ NL H A+ + E R GT V F + + + R ELIEE +
Sbjct: 407 AANLYHLAYEHV---ERPEGKFSGRKGTWVGFTV---DEVIQEAVKRARELIEEKNPALS 460
Query: 66 NAAQRKLLDELGICAEDVPVDEFTPLGRILYKAPSDGKWGEHELDYLLFIVRDVSVNPNP 125
+ + ++ +++GI A + +++P +I++ +W D L F
Sbjct: 461 DEEKAEVAEKVGIGAIRYNLIKYSPDKKIIF------RWE----DVLNF----------E 500
Query: 126 DEVAEYKYVNREQLKELLRKADAGEEGLKLSP 157
E A Y + +LRKA+ EEG+K+ P
Sbjct: 501 GESAPYIQYAHARCSSILRKAE--EEGIKVDP 530
>pdb|3H8I|A Chain A, The First X-Ray Structure Of A Sulfide:quinone
Oxidoreductase: Insights Into Sulfide Oxidation
Mechanism
pdb|3H8I|B Chain B, The First X-Ray Structure Of A Sulfide:quinone
Oxidoreductase: Insights Into Sulfide Oxidation
Mechanism
pdb|3H8L|A Chain A, The First X-Ray Structure Of A Sulfide:quinone
Oxidoreductase: Insights Into Sulfide Oxidation
Mechanism
pdb|3H8L|B Chain B, The First X-Ray Structure Of A Sulfide:quinone
Oxidoreductase: Insights Into Sulfide Oxidation
Mechanism
Length = 409
Score = 27.3 bits (59), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 17/58 (29%), Positives = 29/58 (50%), Gaps = 5/58 (8%)
Query: 61 ALGVRNAAQRKL-----LDELGICAEDVPVDEFTPLGRILYKAPSDGKWGEHELDYLL 113
A+GVR+ + K+ L E GI ++ V++ ++Y DG E E DY++
Sbjct: 49 AIGVRDVDELKVDLSEALPEKGIQFQEGTVEKIDAKSSMVYYTKPDGSMAEEEYDYVI 106
>pdb|2X3V|A Chain A, Structure Of The F-Bar Domain Of Mouse Syndapin I
pdb|2X3V|B Chain B, Structure Of The F-Bar Domain Of Mouse Syndapin I
pdb|2X3V|C Chain C, Structure Of The F-Bar Domain Of Mouse Syndapin I
pdb|2X3W|A Chain A, Structure Of Mouse Syndapin I (Crystal Form 2)
pdb|2X3W|B Chain B, Structure Of Mouse Syndapin I (Crystal Form 2)
pdb|2X3W|C Chain C, Structure Of Mouse Syndapin I (Crystal Form 2)
pdb|2X3X|A Chain A, Structure Of Mouse Syndapin I (Crystal Form 1)
pdb|2X3X|B Chain B, Structure Of Mouse Syndapin I (Crystal Form 1)
pdb|2X3X|C Chain C, Structure Of Mouse Syndapin I (Crystal Form 1)
Length = 337
Score = 27.3 bits (59), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 34/134 (25%), Positives = 60/134 (44%), Gaps = 25/134 (18%)
Query: 44 TCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVP------------VDEFTP- 90
C L E+ + V Q+KL+D++ C +DV V + TP
Sbjct: 160 ACKEERLAMTREMNSKTEQSVTPEQQKKLVDKVDKCRQDVQKTQEKYEKVLEDVGKTTPQ 219
Query: 91 ----LGRILYKAPSDGKWGEHELDYLLFIVRDVSVNPNPDEVAEYKYVNREQLKELLRKA 146
+ ++ + ++ E L +L ++ D+ + N E + Y +V RE L++ +R A
Sbjct: 220 YMEGMEQVFEQCQ---QFEEKRLVFLKEVLLDIKRHLNLAENSSYMHVYRE-LEQAIRGA 275
Query: 147 DAGEEGLKLSPWFR 160
DA +E L+ WFR
Sbjct: 276 DA-QEDLR---WFR 285
>pdb|1ZSX|A Chain A, Crystal Structure Of Human Potassium Channel Kv
Beta-Subunit (Kcnab2)
Length = 347
Score = 26.9 bits (58), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 32/138 (23%), Positives = 52/138 (37%), Gaps = 24/138 (17%)
Query: 29 QRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEF 88
+RS +T + W + +IE G++ + +R L+ + + + P D
Sbjct: 96 RRSSLVITTKIFWGGKAETERGLSRKHIIE----GLKASLERLQLEYVDVVFANRP-DPN 150
Query: 89 TPL-------------GRILYKAPSDGKWGEHELDYLLFIVRDVSVNPNPDEVAEYKYVN 135
TP+ G +Y S +W E+ + R ++ P E AEY
Sbjct: 151 TPMEETVRAMTHVINQGMAMYWGTS--RWSSMEIMEAYSVARQFNLTPPICEQAEYHMFQ 208
Query: 136 RE----QLKELLRKADAG 149
RE QL EL K G
Sbjct: 209 REKVEVQLPELFHKIGVG 226
>pdb|3TTS|A Chain A, Crystal Structure Of Beta-Galactosidase From Bacillus
Circulans Sp. Alkalophilus
pdb|3TTS|B Chain B, Crystal Structure Of Beta-Galactosidase From Bacillus
Circulans Sp. Alkalophilus
pdb|3TTS|C Chain C, Crystal Structure Of Beta-Galactosidase From Bacillus
Circulans Sp. Alkalophilus
pdb|3TTS|D Chain D, Crystal Structure Of Beta-Galactosidase From Bacillus
Circulans Sp. Alkalophilus
pdb|3TTS|E Chain E, Crystal Structure Of Beta-Galactosidase From Bacillus
Circulans Sp. Alkalophilus
pdb|3TTS|F Chain F, Crystal Structure Of Beta-Galactosidase From Bacillus
Circulans Sp. Alkalophilus
pdb|3TTY|A Chain A, Crystal Structure Of Beta-Galactosidase From Bacillus
Circulans Sp. Alkalophilus In Complex With Galactose
pdb|3TTY|B Chain B, Crystal Structure Of Beta-Galactosidase From Bacillus
Circulans Sp. Alkalophilus In Complex With Galactose
pdb|3TTY|C Chain C, Crystal Structure Of Beta-Galactosidase From Bacillus
Circulans Sp. Alkalophilus In Complex With Galactose
pdb|3TTY|D Chain D, Crystal Structure Of Beta-Galactosidase From Bacillus
Circulans Sp. Alkalophilus In Complex With Galactose
pdb|3TTY|E Chain E, Crystal Structure Of Beta-Galactosidase From Bacillus
Circulans Sp. Alkalophilus In Complex With Galactose
pdb|3TTY|F Chain F, Crystal Structure Of Beta-Galactosidase From Bacillus
Circulans Sp. Alkalophilus In Complex With Galactose
Length = 675
Score = 26.9 bits (58), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 12/41 (29%), Positives = 20/41 (48%)
Query: 22 KYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENAL 62
++ + L++R GT W + SH Y E++ NAL
Sbjct: 163 QFRVWLKERYGTLEALNKAWNTSFWSHTFYDWDEIVAPNAL 203
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.138 0.422
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,940,940
Number of Sequences: 62578
Number of extensions: 252024
Number of successful extensions: 609
Number of sequences better than 100.0: 31
Number of HSP's better than 100.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 14
Number of HSP's that attempted gapping in prelim test: 587
Number of HSP's gapped (non-prelim): 32
length of query: 192
length of database: 14,973,337
effective HSP length: 93
effective length of query: 99
effective length of database: 9,153,583
effective search space: 906204717
effective search space used: 906204717
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 49 (23.5 bits)