BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 029516
(192 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|O48964|IDI1_CAMAC Isopentenyl-diphosphate Delta-isomerase I OS=Camptotheca acuminata
GN=IPI1 PE=2 SV=1
Length = 235
Score = 362 bits (928), Expect = 1e-99, Method: Compositional matrix adjust.
Identities = 173/191 (90%), Positives = 182/191 (95%)
Query: 1 MEKIESLNLLHRAFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEEN 60
MEKIES NLLHRAFSVFLFNSKYELLLQQRS TKVTFPLVWTNTCCSHPLYRESELI+EN
Sbjct: 44 MEKIESENLLHRAFSVFLFNSKYELLLQQRSATKVTFPLVWTNTCCSHPLYRESELIKEN 103
Query: 61 ALGVRNAAQRKLLDELGICAEDVPVDEFTPLGRILYKAPSDGKWGEHELDYLLFIVRDVS 120
ALG RNAAQRKLLDELGI AEDVPVD+F PLGRILYKAPSDGKWGEHELDYLLFIVRDV+
Sbjct: 104 ALGARNAAQRKLLDELGIPAEDVPVDQFIPLGRILYKAPSDGKWGEHELDYLLFIVRDVN 163
Query: 121 VNPNPDEVAEYKYVNREQLKELLRKADAGEEGLKLSPWFRLVVDNFLFKWWDHLEKGTLN 180
VNPNPDEVA+ KYV R+QLKELLRKADAGEEGLKLSPWFRLVVDNFLFKWWDH+EKGT++
Sbjct: 164 VNPNPDEVADIKYVTRDQLKELLRKADAGEEGLKLSPWFRLVVDNFLFKWWDHVEKGTMH 223
Query: 181 EVIDMKTIHKL 191
E DMK+IHKL
Sbjct: 224 EAADMKSIHKL 234
>sp|Q42553|IDI2_ARATH Isopentenyl-diphosphate Delta-isomerase II, chloroplastic
OS=Arabidopsis thaliana GN=IPP2 PE=2 SV=1
Length = 284
Score = 360 bits (924), Expect = 3e-99, Method: Compositional matrix adjust.
Identities = 172/191 (90%), Positives = 181/191 (94%)
Query: 1 MEKIESLNLLHRAFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEEN 60
ME IE+ NLLHRAFSVFLFNSKYELLLQQRS TKVTFPLVWTNTCCSHPLYRESELI++N
Sbjct: 94 MENIEAKNLLHRAFSVFLFNSKYELLLQQRSNTKVTFPLVWTNTCCSHPLYRESELIQDN 153
Query: 61 ALGVRNAAQRKLLDELGICAEDVPVDEFTPLGRILYKAPSDGKWGEHELDYLLFIVRDVS 120
ALGVRNAAQRKLLDELGI AEDVPVDEFTPLGR+LYKAPSDGKWGEHELDYLLFIVRDV
Sbjct: 154 ALGVRNAAQRKLLDELGIVAEDVPVDEFTPLGRMLYKAPSDGKWGEHELDYLLFIVRDVK 213
Query: 121 VNPNPDEVAEYKYVNREQLKELLRKADAGEEGLKLSPWFRLVVDNFLFKWWDHLEKGTLN 180
V PNPDEVAE KYV+RE+LKEL++KADAGEEGLKLSPWFRLVVDNFL KWWDH+EKGTL
Sbjct: 214 VQPNPDEVAEIKYVSREELKELVKKADAGEEGLKLSPWFRLVVDNFLMKWWDHVEKGTLV 273
Query: 181 EVIDMKTIHKL 191
E IDMKTIHKL
Sbjct: 274 EAIDMKTIHKL 284
>sp|O48965|IDI2_CAMAC Isopentenyl-diphosphate Delta-isomerase II OS=Camptotheca acuminata
GN=IPI2 PE=2 SV=1
Length = 309
Score = 359 bits (922), Expect = 6e-99, Method: Compositional matrix adjust.
Identities = 168/192 (87%), Positives = 182/192 (94%)
Query: 1 MEKIESLNLLHRAFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEEN 60
MEKIES NLLHRAFSVFLFNSKYELLLQQRS TKVTFPLVWTNTCCSHP YRESEL++EN
Sbjct: 118 MEKIESDNLLHRAFSVFLFNSKYELLLQQRSATKVTFPLVWTNTCCSHPRYRESELVDEN 177
Query: 61 ALGVRNAAQRKLLDELGICAEDVPVDEFTPLGRILYKAPSDGKWGEHELDYLLFIVRDVS 120
ALGVRNAAQRKLLDELGI AEDVPVD+F PLGR+LYKAPSDGKWGEHELDYLLFI+RDV+
Sbjct: 178 ALGVRNAAQRKLLDELGIPAEDVPVDQFIPLGRMLYKAPSDGKWGEHELDYLLFIIRDVN 237
Query: 121 VNPNPDEVAEYKYVNREQLKELLRKADAGEEGLKLSPWFRLVVDNFLFKWWDHLEKGTLN 180
V+PNPDEVA+ KYVN++QLK+LLRK DAGEEGLKLSPWFRLVV+NFLFKWWDH+EKGTL
Sbjct: 238 VHPNPDEVADVKYVNQDQLKDLLRKVDAGEEGLKLSPWFRLVVENFLFKWWDHVEKGTLQ 297
Query: 181 EVIDMKTIHKLT 192
+ DMKTIHKLT
Sbjct: 298 DATDMKTIHKLT 309
>sp|Q39471|IDI2_CLABR Isopentenyl-diphosphate Delta-isomerase II OS=Clarkia breweri
GN=IPI2 PE=3 SV=2
Length = 286
Score = 358 bits (920), Expect = 9e-99, Method: Compositional matrix adjust.
Identities = 171/190 (90%), Positives = 182/190 (95%)
Query: 2 EKIESLNLLHRAFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENA 61
EKIES N+LHRAFSVFLFNSK+ELLLQQRS TKVTFPLVWTNTCCSHPLYRESELI+EN
Sbjct: 97 EKIESGNMLHRAFSVFLFNSKFELLLQQRSATKVTFPLVWTNTCCSHPLYRESELIDENN 156
Query: 62 LGVRNAAQRKLLDELGICAEDVPVDEFTPLGRILYKAPSDGKWGEHELDYLLFIVRDVSV 121
LGVRNAAQRKLLDELGI AEDVPVDEFTPL R+LYKAPSDGKWGEHELDYLLFIVRDV+V
Sbjct: 157 LGVRNAAQRKLLDELGIPAEDVPVDEFTPLSRMLYKAPSDGKWGEHELDYLLFIVRDVAV 216
Query: 122 NPNPDEVAEYKYVNREQLKELLRKADAGEEGLKLSPWFRLVVDNFLFKWWDHLEKGTLNE 181
+PNPDEVAE KYVNREQLKELL+KADAGEEGLKLSPWFRLVVDNFL KWWDH+EKGTL+E
Sbjct: 217 HPNPDEVAEIKYVNREQLKELLKKADAGEEGLKLSPWFRLVVDNFLPKWWDHVEKGTLSE 276
Query: 182 VIDMKTIHKL 191
+DMK+IHKL
Sbjct: 277 AVDMKSIHKL 286
>sp|Q39664|IDI2_CLAXA Isopentenyl-diphosphate Delta-isomerase II OS=Clarkia xantiana
GN=IPI2 PE=3 SV=1
Length = 290
Score = 354 bits (908), Expect = 3e-97, Method: Compositional matrix adjust.
Identities = 168/190 (88%), Positives = 180/190 (94%)
Query: 2 EKIESLNLLHRAFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENA 61
EKIES N+LHRAF+VFLFNSK+ELLLQQRS TKVTFPLVWTNTCCSHPLYRESELI+EN
Sbjct: 101 EKIESGNMLHRAFTVFLFNSKFELLLQQRSATKVTFPLVWTNTCCSHPLYRESELIDENN 160
Query: 62 LGVRNAAQRKLLDELGICAEDVPVDEFTPLGRILYKAPSDGKWGEHELDYLLFIVRDVSV 121
LGVRNAAQRKLLDELGI AEDVPVDEFTP+ R+LYKAPSDGKWGEHELDYLLFIVRDV +
Sbjct: 161 LGVRNAAQRKLLDELGIPAEDVPVDEFTPVSRMLYKAPSDGKWGEHELDYLLFIVRDVGI 220
Query: 122 NPNPDEVAEYKYVNREQLKELLRKADAGEEGLKLSPWFRLVVDNFLFKWWDHLEKGTLNE 181
+PNPDEVA+ KYVNREQLKELLRKADAGEEGLKLSPWFRLVVDNFL KWWDH+EKGTL+E
Sbjct: 221 HPNPDEVADIKYVNREQLKELLRKADAGEEGLKLSPWFRLVVDNFLPKWWDHVEKGTLSE 280
Query: 182 VIDMKTIHKL 191
+DMKTIH L
Sbjct: 281 AVDMKTIHNL 290
>sp|Q38929|IDI1_ARATH Isopentenyl-diphosphate Delta-isomerase I, chloroplastic
OS=Arabidopsis thaliana GN=IPP1 PE=2 SV=3
Length = 291
Score = 353 bits (905), Expect = 5e-97, Method: Compositional matrix adjust.
Identities = 166/191 (86%), Positives = 178/191 (93%)
Query: 1 MEKIESLNLLHRAFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEEN 60
MEKIE+ NLLHRAFSVFLFNSKYELLLQQRS TKVTFPLVWTNTCCSHPLYRESELIEEN
Sbjct: 101 MEKIEAENLLHRAFSVFLFNSKYELLLQQRSKTKVTFPLVWTNTCCSHPLYRESELIEEN 160
Query: 61 ALGVRNAAQRKLLDELGICAEDVPVDEFTPLGRILYKAPSDGKWGEHELDYLLFIVRDVS 120
LGVRNAAQRKL DELGI AEDVPVDEFTPLGR+LYKAPSDGKWGEHE+DYLLFIVRDV
Sbjct: 161 VLGVRNAAQRKLFDELGIVAEDVPVDEFTPLGRMLYKAPSDGKWGEHEVDYLLFIVRDVK 220
Query: 121 VNPNPDEVAEYKYVNREQLKELLRKADAGEEGLKLSPWFRLVVDNFLFKWWDHLEKGTLN 180
+ PNPDEVAE KYV+RE+LKEL++KADAG+E +KLSPWFRLVVDNFL KWWDH+EKGT+
Sbjct: 221 LQPNPDEVAEIKYVSREELKELVKKADAGDEAVKLSPWFRLVVDNFLMKWWDHVEKGTIT 280
Query: 181 EVIDMKTIHKL 191
E DMKTIHKL
Sbjct: 281 EAADMKTIHKL 291
>sp|Q39472|IDI1_CLABR Isopentenyl-diphosphate Delta-isomerase I OS=Clarkia breweri
GN=IPI1 PE=2 SV=2
Length = 287
Score = 351 bits (900), Expect = 2e-96, Method: Compositional matrix adjust.
Identities = 166/191 (86%), Positives = 179/191 (93%)
Query: 1 MEKIESLNLLHRAFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEEN 60
MEKIES NLLHRAFSVFLFNSKYELLLQQRS TKVTFPLVWTNTCCSHPLYRESELI+EN
Sbjct: 97 MEKIESENLLHRAFSVFLFNSKYELLLQQRSATKVTFPLVWTNTCCSHPLYRESELIDEN 156
Query: 61 ALGVRNAAQRKLLDELGICAEDVPVDEFTPLGRILYKAPSDGKWGEHELDYLLFIVRDVS 120
LGVRNAAQRKLLDELGI AED+PVD+F PL RILYKAPSDGKWGEHELDYLLFI+RDV+
Sbjct: 157 CLGVRNAAQRKLLDELGIPAEDLPVDQFIPLSRILYKAPSDGKWGEHELDYLLFIIRDVN 216
Query: 121 VNPNPDEVAEYKYVNREQLKELLRKADAGEEGLKLSPWFRLVVDNFLFKWWDHLEKGTLN 180
++PNPDEVAE KY+NR+ LKELLRKADA EEG+KLSPWFRLVVDNFLFKWWDH+EKG+L
Sbjct: 217 LDPNPDEVAEVKYMNRDDLKELLRKADAEEEGVKLSPWFRLVVDNFLFKWWDHVEKGSLK 276
Query: 181 EVIDMKTIHKL 191
+ DMKTIHKL
Sbjct: 277 DAADMKTIHKL 287
>sp|O35586|IDI1_MESAU Isopentenyl-diphosphate Delta-isomerase 1 OS=Mesocricetus auratus
GN=IDI1 PE=2 SV=1
Length = 227
Score = 217 bits (553), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 103/183 (56%), Positives = 143/183 (78%), Gaps = 4/183 (2%)
Query: 9 LLHRAFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAA 68
LLHRAFSVFLFN++ +LLLQQRS K+TFP +TN+CCSHPL EL E +A+GV+ AA
Sbjct: 49 LLHRAFSVFLFNTENKLLLQQRSDAKITFPGCFTNSCCSHPLSNPGELEENDAIGVKRAA 108
Query: 69 QRKLLDELGICAEDVPVDEFTPLGRILYKAPSDGKWGEHELDYLLFIVRDVSVNPNPDEV 128
QR+L ELGI E+V +E L RI YKA SDG WGEHE+DY+LF+ ++V++NP+P+E+
Sbjct: 109 QRRLKAELGIPLEEVDPNEMHYLTRIYYKAQSDGIWGEHEIDYILFLKKNVTLNPDPNEI 168
Query: 129 AEYKYVNREQLKELLRKADAGEEGLKLSPWFRLVVDNFLFKWWDHLEKGTLNEVIDMKTI 188
Y YV++E+LKEL++KA +GE +KL+PWF+++VD FLFKWWD+L L++ +D + I
Sbjct: 169 KSYCYVSKEELKELVKKAASGE--VKLTPWFKIIVDTFLFKWWDNL--NHLSQFVDHEKI 224
Query: 189 HKL 191
H++
Sbjct: 225 HRM 227
>sp|Q1LZ95|IDI1_BOVIN Isopentenyl-diphosphate Delta-isomerase 1 OS=Bos taurus GN=IDI1
PE=2 SV=2
Length = 227
Score = 216 bits (549), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 103/183 (56%), Positives = 139/183 (75%), Gaps = 4/183 (2%)
Query: 9 LLHRAFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAA 68
LLHRAFSVFLFN++ +LLLQQRS K+TFP +TNTCCSHPL SEL E +A+GVR AA
Sbjct: 49 LLHRAFSVFLFNTENKLLLQQRSDAKITFPGCFTNTCCSHPLSNPSELEENDAIGVRRAA 108
Query: 69 QRKLLDELGICAEDVPVDEFTPLGRILYKAPSDGKWGEHELDYLLFIVRDVSVNPNPDEV 128
QR+L ELGI E+VP +E L RI YKA SD WGEHE+DY+L + ++V++NP+P+E+
Sbjct: 109 QRRLKAELGIPMEEVPPEEINYLTRIHYKAQSDSIWGEHEIDYILLVKKNVTLNPDPNEI 168
Query: 129 AEYKYVNREQLKELLRKADAGEEGLKLSPWFRLVVDNFLFKWWDHLEKGTLNEVIDMKTI 188
Y YV +E+L+EL+ KA GE +K++PWF+++ D FLFKWWD+L + LN +D + I
Sbjct: 169 KSYCYVTKEELEELIGKAAHGE--IKITPWFQIIADTFLFKWWDNLNR--LNLFVDHEKI 224
Query: 189 HKL 191
H++
Sbjct: 225 HRM 227
>sp|P58044|IDI1_MOUSE Isopentenyl-diphosphate Delta-isomerase 1 OS=Mus musculus GN=Idi1
PE=2 SV=1
Length = 227
Score = 214 bits (545), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 101/183 (55%), Positives = 142/183 (77%), Gaps = 4/183 (2%)
Query: 9 LLHRAFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAA 68
LLHRAFSVFLFN++ +LLLQQRS K+TFP +TN+CCSHPL EL E NA+GV+ AA
Sbjct: 49 LLHRAFSVFLFNTENKLLLQQRSDAKITFPGCFTNSCCSHPLSNPGELEENNAIGVKRAA 108
Query: 69 QRKLLDELGICAEDVPVDEFTPLGRILYKAPSDGKWGEHELDYLLFIVRDVSVNPNPDEV 128
+R+L ELGI E+V ++E L RI YKA SDG WGEHE+DY+LF+ ++V++NP+P+E+
Sbjct: 109 KRRLKAELGIPLEEVDLNEMDYLTRIYYKAQSDGIWGEHEVDYILFLRKNVTLNPDPNEI 168
Query: 129 AEYKYVNREQLKELLRKADAGEEGLKLSPWFRLVVDNFLFKWWDHLEKGTLNEVIDMKTI 188
Y YV++E+++E+L+KA +GE +KL+PWF+++ D FLFKWWD+L L+ +D + I
Sbjct: 169 KSYCYVSKEEVREILKKAASGE--IKLTPWFKIIADTFLFKWWDNL--NHLSPFVDHEKI 224
Query: 189 HKL 191
H+L
Sbjct: 225 HRL 227
>sp|O35760|IDI1_RAT Isopentenyl-diphosphate Delta-isomerase 1 OS=Rattus norvegicus
GN=Idi1 PE=2 SV=2
Length = 227
Score = 212 bits (540), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 100/183 (54%), Positives = 140/183 (76%), Gaps = 4/183 (2%)
Query: 9 LLHRAFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAA 68
L+HRAFSVFLFN++ +LLLQQRS K+TFP +TN+CCSHPL EL E +A+GV+ AA
Sbjct: 49 LIHRAFSVFLFNTENKLLLQQRSDAKITFPGCFTNSCCSHPLNNPGELEENDAMGVKRAA 108
Query: 69 QRKLLDELGICAEDVPVDEFTPLGRILYKAPSDGKWGEHELDYLLFIVRDVSVNPNPDEV 128
QR+L ELGI E+V ++E L RI YKA SDG WGEHE+DY+LF+ ++V++NP+P+E+
Sbjct: 109 QRRLKAELGIPLEEVDLNEMNYLTRIYYKAQSDGIWGEHEIDYILFLRKNVTLNPDPNEI 168
Query: 129 AEYKYVNREQLKELLRKADAGEEGLKLSPWFRLVVDNFLFKWWDHLEKGTLNEVIDMKTI 188
Y YV++E+LKE+L+K GE +KL+PWF+++ D FLFKWWD+L L+ +D + I
Sbjct: 169 KSYCYVSKEELKEILKKEARGE--IKLTPWFKIIADAFLFKWWDNL--NHLSPFVDHEKI 224
Query: 189 HKL 191
H++
Sbjct: 225 HRM 227
>sp|Q4R4W5|IDI1_MACFA Isopentenyl-diphosphate Delta-isomerase 1 OS=Macaca fascicularis
GN=IDI1 PE=2 SV=2
Length = 227
Score = 203 bits (517), Expect = 4e-52, Method: Compositional matrix adjust.
Identities = 108/190 (56%), Positives = 145/190 (76%), Gaps = 5/190 (2%)
Query: 2 EKIESLNLLHRAFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENA 61
E IE LLHRAFSVFLFN++ +LLLQQRS K+TFP +TNTCCSHPL EL E +A
Sbjct: 43 ENIEK-GLLHRAFSVFLFNTENKLLLQQRSDAKITFPGCFTNTCCSHPLSNPGELEENDA 101
Query: 62 LGVRNAAQRKLLDELGICAEDVPVDEFTPLGRILYKAPSDGKWGEHELDYLLFIVRDVSV 121
LGVR AAQR+L ELGI E+VP +E L RI YKA SDG WGEHE+DY+LF+ ++V++
Sbjct: 102 LGVRRAAQRRLKAELGIPLEEVPPEEINYLTRIHYKAQSDGIWGEHEIDYILFVRKNVTL 161
Query: 122 NPNPDEVAEYKYVNREQLKELLRKADAGEEGLKLSPWFRLVVDNFLFKWWDHLEKGTLNE 181
NP+P+E+ + YV++E+LKELL+KA GE +K++PWF+++ + FLFKWWD+L LN+
Sbjct: 162 NPDPNEIKSFCYVSKEELKELLKKAANGE--IKITPWFQIIAETFLFKWWDNLNH--LNQ 217
Query: 182 VIDMKTIHKL 191
+D + IH++
Sbjct: 218 FVDHEKIHRM 227
>sp|Q13907|IDI1_HUMAN Isopentenyl-diphosphate Delta-isomerase 1 OS=Homo sapiens GN=IDI1
PE=1 SV=2
Length = 227
Score = 201 bits (512), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 107/190 (56%), Positives = 145/190 (76%), Gaps = 5/190 (2%)
Query: 2 EKIESLNLLHRAFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENA 61
E IE LLHRAFSVFLFN++ +LLLQQRS K+TFP +TNTCCSHPL +EL E +A
Sbjct: 43 ENIEK-GLLHRAFSVFLFNTENKLLLQQRSDAKITFPGCFTNTCCSHPLSNPAELEESDA 101
Query: 62 LGVRNAAQRKLLDELGICAEDVPVDEFTPLGRILYKAPSDGKWGEHELDYLLFIVRDVSV 121
LGVR AAQR+L ELGI E+VP +E L RI YKA SDG WGEHE+DY+L + ++V++
Sbjct: 102 LGVRRAAQRRLKAELGIPLEEVPPEEINYLTRIHYKAQSDGIWGEHEIDYILLVRKNVTL 161
Query: 122 NPNPDEVAEYKYVNREQLKELLRKADAGEEGLKLSPWFRLVVDNFLFKWWDHLEKGTLNE 181
NP+P+E+ Y YV++E+LKELL+KA +GE +K++PWF+++ FLFKWWD+L LN+
Sbjct: 162 NPDPNEIKSYCYVSKEELKELLKKAASGE--IKITPWFKIIAATFLFKWWDNLNH--LNQ 217
Query: 182 VIDMKTIHKL 191
+D + I+++
Sbjct: 218 FVDHEKIYRM 227
>sp|Q5R8R6|IDI1_PONAB Isopentenyl-diphosphate Delta-isomerase 1 OS=Pongo abelii GN=IDI1
PE=2 SV=2
Length = 227
Score = 199 bits (506), Expect = 9e-51, Method: Compositional matrix adjust.
Identities = 106/190 (55%), Positives = 144/190 (75%), Gaps = 5/190 (2%)
Query: 2 EKIESLNLLHRAFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENA 61
E IE LLHRAFSVFLFN++ +LLLQQRS K+T P +TNTCCSHPL EL E +A
Sbjct: 43 ENIEK-GLLHRAFSVFLFNTENKLLLQQRSDAKITLPGCFTNTCCSHPLSNPGELEENDA 101
Query: 62 LGVRNAAQRKLLDELGICAEDVPVDEFTPLGRILYKAPSDGKWGEHELDYLLFIVRDVSV 121
LGVR AAQR+L ELGI E+VP +E L RI YKA SDG WGEHE+DY+L + ++V++
Sbjct: 102 LGVRRAAQRRLKAELGIPLEEVPPEEINYLTRIHYKAQSDGIWGEHEIDYILLVRKNVTL 161
Query: 122 NPNPDEVAEYKYVNREQLKELLRKADAGEEGLKLSPWFRLVVDNFLFKWWDHLEKGTLNE 181
NP+P+E+ Y YV++E+LKELL+KA +GE +K++PWF+++ + FLFKWWD+L LN+
Sbjct: 162 NPDPNEIKSYCYVSKEELKELLKKAASGE--IKITPWFKIIAETFLFKWWDNLNH--LNQ 217
Query: 182 VIDMKTIHKL 191
+D + I+++
Sbjct: 218 FVDHEKIYRI 227
>sp|Q10132|IDI1_SCHPO Isopentenyl-diphosphate Delta-isomerase OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=idi1 PE=2 SV=2
Length = 229
Score = 182 bits (462), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 93/181 (51%), Positives = 121/181 (66%), Gaps = 13/181 (7%)
Query: 4 IESLN--LLHRAFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESE---LIE 58
+E++N LLHRAFS+F+F+ + LLLQQR+ K+TFP +WTNTCCSHPL E +
Sbjct: 45 MENINKGLLHRAFSMFIFDEQNRLLLQQRAEEKITFPSLWTNTCCSHPLDVAGERGNTLP 104
Query: 59 ENALGVRNAAQRKLLDELGICAEDVPVDEFTPLGRILYKAPSDGKWGEHELDYLLFIVRD 118
E GV+NAAQRKL ELGI A+ +P D+F L RI Y APS G WGEHE+DY+LF
Sbjct: 105 EAVEGVKNAAQRKLFHELGIQAKYIPKDKFQFLTRIHYLAPSTGAWGEHEIDYILFFKGK 164
Query: 119 VSVNPNPDEVAEYKYVNREQLKELLRKADAGEEGLKLSPWFRLVVDNFLFKWW---DHLE 175
V ++ NP+EV YKYV E+LKE+ G +PWF+L+ ++F+FKWW DH
Sbjct: 165 VELDINPNEVQAYKYVTMEELKEMFSDPQYG-----FTPWFKLICEHFMFKWWQDVDHAS 219
Query: 176 K 176
K
Sbjct: 220 K 220
>sp|O42641|IDI1_PHARH Isopentenyl-diphosphate Delta-isomerase OS=Phaffia rhodozyma GN=IDI
PE=3 SV=1
Length = 251
Score = 179 bits (454), Expect = 9e-45, Method: Compositional matrix adjust.
Identities = 93/191 (48%), Positives = 121/191 (63%), Gaps = 15/191 (7%)
Query: 8 NLLHRAFSVFLFN-SKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRN 66
+LLHRAFSVFLF S LLLQ+R+ K+TFP +WTNTCCSHPL + E+ EEN +GVR
Sbjct: 63 DLLHRAFSVFLFRPSDGALLLQRRADEKITFPGMWTNTCCSHPLSIKGEVKEENQIGVRR 122
Query: 67 AAQRKLLDELGICAEDVPVDEFTPLGRILYKAPSDGKWGEHELDYLLFIVRDVSVNPNPD 126
AA RKL ELG+ P D FT L RI Y APSDG WGEHE+DY+LF NP+
Sbjct: 123 AASRKLEHELGVPTSSTPPDSFTYLTRIHYLAPSDGLWGEHEIDYILFSTTPTEHTGNPN 182
Query: 127 EVAEYKYVNREQLKELLRKADAGEEGLKLSPWFRLVVDNFLFKWWDHL-----EKGTLNE 181
EV++ +YV + +L+ + +E +PWF+L+ +FLF WWD L EKG
Sbjct: 183 EVSDTRYVTKPELQAMFE-----DESNSFTPWFKLIARDFLFGWWDQLLARRNEKGE--- 234
Query: 182 VIDMKTIHKLT 192
+D K++ L+
Sbjct: 235 -VDAKSLEDLS 244
>sp|Q9NH02|IDI_DICDI Isopentenyl-diphosphate Delta-isomerase OS=Dictyostelium discoideum
GN=ipi PE=2 SV=1
Length = 239
Score = 176 bits (446), Expect = 8e-44, Method: Compositional matrix adjust.
Identities = 88/170 (51%), Positives = 127/170 (74%), Gaps = 6/170 (3%)
Query: 9 LLHRAFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLY-RESELIEENALGVRNA 67
LLHRAFS+FLFN + +LLLQQR+ K+TFP WTNT CSHPL+ SEL+EENA GV+ A
Sbjct: 56 LLHRAFSIFLFNGEGKLLLQQRALEKITFPGYWTNTVCSHPLWIVGSELVEENAQGVKIA 115
Query: 68 AQRKLLDELGICAEDVPVDEFTPLGRILYKAPS--DGKWGEHELDYLLFIVRD-VSVNPN 124
A+RKL ELG+ + V +D+FT + +I YK+ S D +WGEHE+D++L + +D +++N
Sbjct: 116 AKRKLNHELGVPLDQVNIDDFTFMTKIHYKSESKEDPQWGEHEIDHILIMQKDGITINAE 175
Query: 125 PDEVAEYKYVNREQLKELLRKADAGEEGLKLSPWFRLVVDNFLFKWWDHL 174
P+EV +YKYV++E+L +L + D G+ +K++PWFRL+ N L WW++L
Sbjct: 176 PNEVMDYKYVSQEELDQLFKDEDEGK--VKVTPWFRLIALNHLKPWWNNL 223
>sp|Q8BFZ6|IDI2_MOUSE Isopentenyl-diphosphate Delta-isomerase 2 OS=Mus musculus GN=Idi2
PE=2 SV=1
Length = 227
Score = 169 bits (427), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 85/174 (48%), Positives = 120/174 (68%), Gaps = 4/174 (2%)
Query: 4 IESLN--LLHRAFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENA 61
+E++N LLHRAFSV LFN K ELL+QQR+ K TFP +T++C SHPLY EL E++A
Sbjct: 42 MENINKGLLHRAFSVVLFNMKNELLVQQRADAKYTFPGHFTDSCSSHPLYVPEELEEKDA 101
Query: 62 LGVRNAAQRKLLDELGICAEDVPVDEFTPLGRILYKAPSDGKWGEHELDYLLFIVRDVSV 121
LGVR AA R+L ELGI + + + + + R +K SD WGEHE+ YLL + +D+ +
Sbjct: 102 LGVRRAALRRLQAELGISQDQISIKDIIFMTRKYHKCQSDAIWGEHEIGYLLLVRKDLML 161
Query: 122 NPNPDEVAEYKYVNREQLKELLRKADAGEEGLKLSPWFRLVVDNFLFKWWDHLE 175
NP+ EV Y++++ ++ELL + GEE K++PWFR +V++FLF WW HLE
Sbjct: 162 NPDTREVRRCCYMSQKDVQELLDREARGEE--KITPWFRSMVEDFLFSWWPHLE 213
>sp|Q9BXS1|IDI2_HUMAN Isopentenyl-diphosphate Delta-isomerase 2 OS=Homo sapiens GN=IDI2
PE=1 SV=1
Length = 227
Score = 163 bits (412), Expect = 7e-40, Method: Compositional matrix adjust.
Identities = 88/190 (46%), Positives = 129/190 (67%), Gaps = 5/190 (2%)
Query: 2 EKIESLNLLHRAFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENA 61
E IE LLHRAFSV LFN+K +L+QQRS TKVTFP +T++C SHPLY +EL E++A
Sbjct: 43 ENIEK-GLLHRAFSVVLFNTKNRILIQQRSDTKVTFPGYFTDSCSSHPLYNPAELEEKDA 101
Query: 62 LGVRNAAQRKLLDELGICAEDVPVDEFTPLGRILYKAPSDGKWGEHELDYLLFIVRDVSV 121
+GVR AAQR+L ELGI E + ++ + +KA SD WGEHE+ YLL + ++V++
Sbjct: 102 IGVRRAAQRRLQAELGIPGEQISPEDIVFMTIYHHKAKSDRIWGEHEICYLLLVRKNVTL 161
Query: 122 NPNPDEVAEYKYVNREQLKELLRKADAGEEGLKLSPWFRLVVDNFLFKWWDHLEKGTLNE 181
NP+P E Y+++E+L ELL + GE +K++PW R + + FL++WW HL+ T
Sbjct: 162 NPDPSETKSILYLSQEELWELLEREARGE--VKVTPWLRTIAERFLYRWWPHLDDVT--P 217
Query: 182 VIDMKTIHKL 191
+++ IH++
Sbjct: 218 FVELHKIHRV 227
>sp|P15496|IDI1_YEAST Isopentenyl-diphosphate Delta-isomerase OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=IDI1 PE=1 SV=2
Length = 288
Score = 162 bits (411), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 90/201 (44%), Positives = 128/201 (63%), Gaps = 18/201 (8%)
Query: 1 MEKIESLNLLHRAFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESEL---- 56
ME IE LLHRAFSVF+FN + ELLLQQR+ K+TFP +WTNTCCSHPL + EL
Sbjct: 95 MENIEK-GLLHRAFSVFIFNEQGELLLQQRATEKITFPDLWTNTCCSHPLCIDDELGLKG 153
Query: 57 -IEENALGVRNAAQRKLLDELGICAEDVPV-DEFTPLGRILYKAPSDGKWGEHELDYLLF 114
+++ G AA RKL ELGI ++ +F L RI Y APS+ WGEHE+DY+LF
Sbjct: 154 KLDDKIKGAITAAVRKLDHELGIPEDETKTRGKFHFLNRIHYMAPSNEPWGEHEIDYILF 213
Query: 115 ----IVRDVSVNPNPDEVAEYKYVNREQLKELLRKADAGEEGLKLSPWFRLVVDNFLFKW 170
+++VNPN +EV ++K+V+ LK + + K +PWF+++ +N+LF W
Sbjct: 214 YKINAKENLTVNPNVNEVRDFKWVSPNDLKTMF-----ADPSYKFTPWFKIICENYLFNW 268
Query: 171 WDHLEKGTLNEVIDMKTIHKL 191
W+ L+ L+EV + + IH++
Sbjct: 269 WEQLDD--LSEVENDRQIHRM 287
>sp|Q5YYB6|IDI_NOCFA Isopentenyl-diphosphate Delta-isomerase OS=Nocardia farcinica
(strain IFM 10152) GN=idi PE=3 SV=1
Length = 175
Score = 95.1 bits (235), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 58/157 (36%), Positives = 82/157 (52%), Gaps = 23/157 (14%)
Query: 10 LHRAFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQ 69
LHRAFSV LF++ +LLQQR+ K FPL+W NTCC HP ES V AA
Sbjct: 28 LHRAFSVLLFDTAGRVLLQQRAAVKTRFPLLWANTCCGHPAPGES---------VEAAAA 78
Query: 70 RKLLDELGICAEDVPVDEFTPLGRILYKAPSDGKWG--EHELDYLLFIVRDVSVNPNPDE 127
+L +ELG+ A T +G Y+A +D G EHE D++L D + +P+P E
Sbjct: 79 TRLAEELGVAA------GLTEVGVFRYRA-ADTATGRVEHEWDHVLIGTLDTTPHPDPAE 131
Query: 128 VAEYKYVNREQLKELLRKADAGEEGLKLSPWFRLVVD 164
VA ++V +++ L E +PW V++
Sbjct: 132 VANLRWVRPAEVRAKL-----AAEPAAYTPWLAEVLE 163
>sp|A8GDW2|IDI_SERP5 Isopentenyl-diphosphate Delta-isomerase OS=Serratia proteamaculans
(strain 568) GN=idi PE=3 SV=1
Length = 179
Score = 92.4 bits (228), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 51/139 (36%), Positives = 75/139 (53%), Gaps = 15/139 (10%)
Query: 3 KIESLNLLHRAFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENAL 62
++ LLHRAFS+F+F+S+ LLLQQR+ +K +WTN+CC HP + ES L
Sbjct: 22 RVHQQGLLHRAFSIFIFDSQGRLLLQQRAFSKYHSAGLWTNSCCGHPRWGESTLA----- 76
Query: 63 GVRNAAQRKLLDELGICAEDVPVDEFTPLGRILYKAPSDGKWGEHELDYLLFIVRDVSVN 122
AAQR+L +E+G AE V FT Y+A G EHE D++ + D
Sbjct: 77 ----AAQRRLQEEMGFSAELQQVSSFT------YQAAVPGDLIEHEFDHIYVGLFDGKPQ 126
Query: 123 PNPDEVAEYKYVNREQLKE 141
P+E + + + +QL +
Sbjct: 127 GAPEEAHSWSWTDIQQLTD 145
>sp|Q6D3F5|IDI_ERWCT Isopentenyl-diphosphate Delta-isomerase OS=Erwinia carotovora
subsp. atroseptica (strain SCRI 1043 / ATCC BAA-672)
GN=idi PE=3 SV=1
Length = 179
Score = 91.3 bits (225), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 57/162 (35%), Positives = 84/162 (51%), Gaps = 22/162 (13%)
Query: 10 LHRAFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQ 69
LHRA +V++FNS+ +LLLQQR+ K +W+NTCCSHP E L AA
Sbjct: 30 LHRAITVYIFNSRQQLLLQQRAEEKYHSGGLWSNTCCSHPAPGEETL---------QAAH 80
Query: 70 RKLLDELGI-CAEDVPVDEFTPLGRILYKAPSDGKWGEHELDYLLFIVRDVSVNPNPDEV 128
R+L +E+G+ CA TP+ + Y+ D EHEL ++ F V D NPDEV
Sbjct: 81 RRLYEEMGLRCA-------LTPMFTLTYRLQLDNGLIEHELGHVYFGVTDDVPQINPDEV 133
Query: 129 AEYKYVNREQLKELLRKADAGEEGLKLSPWFRLVVDNFLFKW 170
+ Y+Y + + E+ ++ E + + WF+L W
Sbjct: 134 SSYEY---QSIDEITQRMMMTPE--QFTAWFQLTFARIPDYW 170
>sp|Q7N0A6|IDI2_PHOLL Isopentenyl-diphosphate Delta-isomerase 2 OS=Photorhabdus
luminescens subsp. laumondii (strain TT01) GN=idi2 PE=3
SV=1
Length = 177
Score = 83.2 bits (204), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 54/166 (32%), Positives = 87/166 (52%), Gaps = 20/166 (12%)
Query: 4 IESLNLLHRAFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALG 63
I +LHRAFS+F+F++K LLLQ+R+ TK +WTN+CC HP R E +E
Sbjct: 23 IHQKGMLHRAFSIFVFDNKGNLLLQKRAATKYHSAGLWTNSCCGHP--RVGEALEA---- 76
Query: 64 VRNAAQRKLLDELGICAEDVPVDEFTPLGRILYKAPSDGKWGEHELDYLLFIVRDVSVNP 123
AA R+L +E+G D P+ + + +Y A E+E D++ D
Sbjct: 77 ---AAHRRLGEEMGF---DCPLKKVSSF---IYHAILPNNLIEYEYDHVFIGRFDKEPII 127
Query: 124 NPDEVAEYKYVNREQLKELLRKADAGEEGLKLSPWFRLVVDNFLFK 169
N DEV++YK+VN +L+ L+ A + WF+ +++ ++
Sbjct: 128 NLDEVSDYKWVNLLKLRALINNAPD-----VYTVWFKKIINGLSYQ 168
>sp|B1VTW2|IDI_STRGG Isopentenyl-diphosphate Delta-isomerase OS=Streptomyces griseus
subsp. griseus (strain JCM 4626 / NBRC 13350) GN=idi
PE=3 SV=1
Length = 197
Score = 82.8 bits (203), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 55/157 (35%), Positives = 74/157 (47%), Gaps = 24/157 (15%)
Query: 10 LHRAFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQ 69
LHRAFSVFLF+ + LLLQ+R+ K P VW+NTCC HP E+ AA
Sbjct: 47 LHRAFSVFLFDEQGRLLLQRRALGKYHSPGVWSNTCCGHPYPGEAPFA---------AAA 97
Query: 70 RKLLDELGICAEDVPVDEFTPLGRILYKAPSDGKWG--EHELDYLLFIVRDVSVNPNPDE 127
R+ +ELG+ G + Y P D G E E ++L + + P+P+E
Sbjct: 98 RRTHEELGLSP-----SLLAEAGTVRYNHP-DPASGLVEQEFNHLFVGLAQTAPKPDPEE 151
Query: 128 VAEYKYVNREQLKELLRKADAGEEGLKLSPWFRLVVD 164
V E +V +L E KA S WF V+D
Sbjct: 152 VGETAFVTAAELAERHAKA-------PFSAWFMTVLD 181
>sp|A9AST0|IDI_BURM1 Isopentenyl-diphosphate Delta-isomerase OS=Burkholderia multivorans
(strain ATCC 17616 / 249) GN=idi PE=3 SV=1
Length = 176
Score = 82.0 bits (201), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 51/158 (32%), Positives = 83/158 (52%), Gaps = 20/158 (12%)
Query: 8 NLLHRAFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNA 67
LLHRAFS+F+F+S LLLQQR+ K +W+NTCC HP RE+ + +A
Sbjct: 27 GLLHRAFSIFVFDSAGRLLLQQRALNKYHSGGLWSNTCCGHPRPREA---------LPDA 77
Query: 68 AQRKLLDELGICAEDVPVDEFTPLGRILYKAPSDGKWGEHELDYLLFIVRDVSVNPNPDE 127
+R+L +E+G E PVD ++Y+A + EHE ++ D +V P+ E
Sbjct: 78 VRRRLGEEMGFACELRPVDA------LVYRARFENDLIEHEFVHIHVGRFDGTVAPDFAE 131
Query: 128 VAEYKYVNREQLKELLRKADAGEEGLKLSPWFRLVVDN 165
VA +++++ L E + +E + WF +++
Sbjct: 132 VAAWRWIDVPTLLEWM-----ADEPSAFTVWFHCMIER 164
>sp|A1WXH5|IDI_HALHL Isopentenyl-diphosphate Delta-isomerase OS=Halorhodospira halophila
(strain DSM 244 / SL1) GN=idi PE=3 SV=1
Length = 175
Score = 81.6 bits (200), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 57/159 (35%), Positives = 81/159 (50%), Gaps = 24/159 (15%)
Query: 8 NLLHRAFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNA 67
LH AF VF+FN + ELLLQ+R+ +K F +W+NTCC HP R E GV A
Sbjct: 27 GTLHLAFCVFVFNPRGELLLQRRADSKYHFSGLWSNTCCGHP--RPGE-------GVTEA 77
Query: 68 AQRKLLDELGICAEDVPVDEFTPLGRILYKAPSDGKWGEHELDYL-LFIVRDVSVNPNPD 126
A+R+L +E G PV +FT Y A D G E +Y + I R + P PD
Sbjct: 78 AERRLGEEFGFVTRLHPVAQFT------YHA-EDHHTGLAEYEYAHVLIGRAPTDQPAPD 130
Query: 127 --EVAEYKYVNREQLKELLRKADAGEEGLKLSPWFRLVV 163
E+ +++ L +AD + L+ +PWFR ++
Sbjct: 131 PLEIGAWEWA-----APLRIQADTQQYPLRYTPWFRRLI 164
>sp|Q9X7Q6|IDI_STRCO Isopentenyl-diphosphate Delta-isomerase OS=Streptomyces coelicolor
(strain ATCC BAA-471 / A3(2) / M145) GN=idi PE=3 SV=1
Length = 197
Score = 80.1 bits (196), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 55/157 (35%), Positives = 75/157 (47%), Gaps = 24/157 (15%)
Query: 10 LHRAFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQ 69
LHRAFSVFLF+ + LL+QQR+ K P VW+NTCC HP E+ AA
Sbjct: 47 LHRAFSVFLFDERGRLLIQQRALGKYHSPGVWSNTCCGHPYPGEAPFA---------AAA 97
Query: 70 RKLLDELGICAEDVPVDEFTPLGRILYKAPSDGKWG--EHELDYLLFIVRDVSVNPNPDE 127
R+ +ELG+ G + Y P D G E E ++L + + P+P+E
Sbjct: 98 RRTFEELGVSP-----SLLAEAGTVRYNHP-DPASGLVEQEYNHLFVGLVQAELRPDPEE 151
Query: 128 VAEYKYVNREQLKELLRKADAGEEGLKLSPWFRLVVD 164
VA +V+ +L E R A S WF V+D
Sbjct: 152 VAGTAFVSPAELTE--RHAQD-----TFSAWFMTVLD 181
>sp|B5F9P6|IDI_VIBFM Isopentenyl-diphosphate Delta-isomerase OS=Vibrio fischeri (strain
MJ11) GN=idi PE=3 SV=1
Length = 181
Score = 77.8 bits (190), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 62/174 (35%), Positives = 85/174 (48%), Gaps = 24/174 (13%)
Query: 1 MEKIESL--NLLHRAFSVFLFNSK---YELLLQQRSGTKVTFPLVWTNTCCSHPLYRESE 55
MEK+E+ LLH AFSV L+ E LLQ+R+ K W+NTCCSHP E+
Sbjct: 18 MEKLEAHEKGLLHLAFSVLLYRETDLGKEFLLQKRAECKYHSKNKWSNTCCSHPRVNEN- 76
Query: 56 LIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPLGRILYKAPSDGKWGEHELDYLLFI 115
V A R+L +E+GI V ++F LG +Y+A + EHE DY+L
Sbjct: 77 --------VEAAGTRRLNEEIGITG--VLPEQFVNLGWFIYQAELENGLSEHEQDYILIA 126
Query: 116 -VRDVSVNPNPDEVAEYKYVNREQL-KELLRKADAGEEGLKLSPWFRLVVDNFL 167
DVS NP+EV++ ++ + + KEL D S WF V L
Sbjct: 127 NTPDVSFILNPEEVSDIQWWSEADIEKELKANPDT------FSVWFPTVYKKVL 174
>sp|Q82MJ7|IDI_STRAW Isopentenyl-diphosphate Delta-isomerase OS=Streptomyces avermitilis
(strain ATCC 31267 / DSM 46492 / JCM 5070 / NCIMB 12804
/ NRRL 8165 / MA-4680) GN=idi PE=3 SV=1
Length = 197
Score = 77.0 bits (188), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 51/156 (32%), Positives = 71/156 (45%), Gaps = 22/156 (14%)
Query: 10 LHRAFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQ 69
LHRAFSVFLF+ + LLLQQR+ K P VW+NTCC HP E+ AA
Sbjct: 47 LHRAFSVFLFDEQGRLLLQQRALGKYHSPGVWSNTCCGHPYPGEAPFA---------AAA 97
Query: 70 RKLLDELGICAEDVPVDEFTPLGRILYKAP-SDGKWGEHELDYLLFIVRDVSVNPNPDEV 128
R+ +ELG+ G + Y P D E E ++L + + P+ +E+
Sbjct: 98 RRTHEELGVSP-----SLLAEAGTVRYNHPDPDSGLVEQEFNHLFVGLVQSPLRPDAEEI 152
Query: 129 AEYKYVNREQLKELLRKADAGEEGLKLSPWFRLVVD 164
+ +V +L E K S WF V+D
Sbjct: 153 GDTAFVTAAELAERHAKD-------PFSSWFMTVLD 181
>sp|Q7N1V4|IDI1_PHOLL Isopentenyl-diphosphate Delta-isomerase 1 OS=Photorhabdus
luminescens subsp. laumondii (strain TT01) GN=idi1 PE=3
SV=1
Length = 176
Score = 76.6 bits (187), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 47/151 (31%), Positives = 75/151 (49%), Gaps = 18/151 (11%)
Query: 10 LHRAFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQ 69
LHRAFS F+ NSK E+ +QQR+ +K+ +P W+N+ CSHP E + +A
Sbjct: 29 LHRAFSCFIINSKNEVYIQQRAQSKLLWPGYWSNSYCSHPRPDEE---------ISHAVM 79
Query: 70 RKLLDELGICAEDVPVDEFTPLGRILYKAPSDGKWGEHELDYLLFIVRDVSVNPNPDEVA 129
R+ +ELGI + P L + YK EHEL ++ + D NP EV+
Sbjct: 80 RRAEEELGIVINEEP----KFLYKFQYKEKYKDVGYEHELCHVFVVFTDTPPTENPKEVS 135
Query: 130 EYKYVNREQLKELLRKADAGEEGLKLSPWFR 160
++N + ++E + + +PWF+
Sbjct: 136 AGFFINIKDVQEYIHNNEEF-----CTPWFK 161
>sp|Q5E7U8|IDI_VIBF1 Isopentenyl-diphosphate Delta-isomerase OS=Vibrio fischeri (strain
ATCC 700601 / ES114) GN=idi PE=3 SV=1
Length = 181
Score = 76.6 bits (187), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 61/174 (35%), Positives = 85/174 (48%), Gaps = 24/174 (13%)
Query: 1 MEKIES--LNLLHRAFSVFLFNSK---YELLLQQRSGTKVTFPLVWTNTCCSHPLYRESE 55
MEK+E+ LLH AFSV L+ E LLQ+R+ K W+NTCCSHP E+
Sbjct: 18 MEKLEAHEKGLLHLAFSVLLYRETDLGKEFLLQKRAECKYHSKNKWSNTCCSHPRVNEN- 76
Query: 56 LIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPLGRILYKAPSDGKWGEHELDYLLFI 115
V A R+L +E+GI V ++F LG +Y+A + EHE DY+L
Sbjct: 77 --------VEVAGTRRLNEEIGITG--VLPEQFVNLGWFIYQAELENGLSEHEQDYILIA 126
Query: 116 -VRDVSVNPNPDEVAEYKYVNREQL-KELLRKADAGEEGLKLSPWFRLVVDNFL 167
DVS NP+EV++ ++ + + KE+ D S WF V L
Sbjct: 127 NTPDVSFILNPEEVSDIQWWSEADIEKEMKANPDT------FSVWFPTVYKKVL 174
>sp|Q5NWG5|IDI2_AROAE Isopentenyl-diphosphate Delta-isomerase 2 OS=Aromatoleum aromaticum
(strain EbN1) GN=idi2 PE=3 SV=1
Length = 189
Score = 76.6 bits (187), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 48/136 (35%), Positives = 73/136 (53%), Gaps = 15/136 (11%)
Query: 10 LHRAFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQ 69
LHRA S+F+F+S L+LQ+R+ K +W+NTCCSHP EE+A +AA+
Sbjct: 29 LHRAISIFVFDSHSRLMLQRRAAGKYHSGGLWSNTCCSHPRPN-----EESA----DAAR 79
Query: 70 RKLLDELGICAEDVPVDEFTPLGRILYKAPSDGKWGEHELDYLLFIVRDVSVNPNPDEVA 129
R+L +E+G+ E F +Y+ EHE D++ F D NPDE
Sbjct: 80 RRLREEMGVDCELKKAFSF------VYRTKFGSGLIEHEFDHVFFGNHDGRPVLNPDEAD 133
Query: 130 EYKYVNREQLKELLRK 145
++K+V+ +L +RK
Sbjct: 134 DWKWVDLTELTVDVRK 149
>sp|Q6LUX5|IDI_PHOPR Isopentenyl-diphosphate Delta-isomerase OS=Photobacterium profundum
GN=idi PE=3 SV=1
Length = 180
Score = 73.9 bits (180), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 53/158 (33%), Positives = 83/158 (52%), Gaps = 22/158 (13%)
Query: 10 LHRAFSVFLF---NSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRN 66
LH AFSV L+ E L+QQR+ K +WTNTCCSHP R+ E +E+ L
Sbjct: 31 LHLAFSVLLYRETTQGIEFLMQQRALGKYHSGGLWTNTCCSHP--RQGETLEQAGL---- 84
Query: 67 AAQRKLLDELGICAEDVPVDEFTPLGRILYKAPSDGKWGEHELDYLLFI-VRDVSVNPNP 125
R+L +E+GI V ++ + +Y+A D + EHE D++L ++++ PN
Sbjct: 85 ---RRLTEEMGI----VGLESLDDIASFVYRAELDNQLIEHEWDHVLIANGTELAIIPNS 137
Query: 126 DEVAEYKYVNREQLKELLRKADAGEEGLKLSPWFRLVV 163
+EV Y++ ++ L+ L AD E + WF V+
Sbjct: 138 EEVKSYRWWSKADLE--LGLADTPE---LFTAWFPQVL 170
>sp|C1AP18|IDI_MYCBT Isopentenyl-diphosphate Delta-isomerase OS=Mycobacterium bovis
(strain BCG / Tokyo 172 / ATCC 35737 / TMC 1019) GN=idi
PE=3 SV=1
Length = 176
Score = 73.2 bits (178), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 53/151 (35%), Positives = 78/151 (51%), Gaps = 17/151 (11%)
Query: 10 LHRAFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQ 69
LH AFS ++F+ +LL+ +R+ TK T+P VWTN+CC HPL ES + A +
Sbjct: 39 LHLAFSSYVFDLHDQLLITRRAATKRTWPAVWTNSCCGHPLPGES---------LPGAIR 89
Query: 70 RKLLDELGICAEDVPVDEFTPLGRILYKAPSDGKWGEHELDYLLFIVRDVSVNPNPDEVA 129
R+L ELG+ + VD P R Y+A E+E+ + + D PN DEV
Sbjct: 90 RRLAAELGLTPDR--VDLILPGFR--YRAAMADGTVENEICPVYRVQVDQQPRPNSDEVD 145
Query: 130 EYKYVNREQLKELLRKADAGEEGLKLSPWFR 160
++++ EQ +R AG +SPW R
Sbjct: 146 AIRWLSWEQ---FVRDVTAGVIA-PVSPWCR 172
>sp|A1KJG2|IDI_MYCBP Isopentenyl-diphosphate Delta-isomerase OS=Mycobacterium bovis
(strain BCG / Pasteur 1173P2) GN=idi PE=3 SV=1
Length = 176
Score = 73.2 bits (178), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 53/151 (35%), Positives = 78/151 (51%), Gaps = 17/151 (11%)
Query: 10 LHRAFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQ 69
LH AFS ++F+ +LL+ +R+ TK T+P VWTN+CC HPL ES + A +
Sbjct: 39 LHLAFSSYVFDLHDQLLITRRAATKRTWPAVWTNSCCGHPLPGES---------LPGAIR 89
Query: 70 RKLLDELGICAEDVPVDEFTPLGRILYKAPSDGKWGEHELDYLLFIVRDVSVNPNPDEVA 129
R+L ELG+ + VD P R Y+A E+E+ + + D PN DEV
Sbjct: 90 RRLAAELGLTPDR--VDLILPGFR--YRAAMADGTVENEICPVYRVQVDQQPRPNSDEVD 145
Query: 130 EYKYVNREQLKELLRKADAGEEGLKLSPWFR 160
++++ EQ +R AG +SPW R
Sbjct: 146 AIRWLSWEQ---FVRDVTAGVIA-PVSPWCR 172
>sp|P72002|IDI_MYCTU Isopentenyl-diphosphate Delta-isomerase OS=Mycobacterium
tuberculosis GN=idi PE=3 SV=1
Length = 203
Score = 72.8 bits (177), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 53/151 (35%), Positives = 78/151 (51%), Gaps = 17/151 (11%)
Query: 10 LHRAFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQ 69
LH AFS ++F+ +LL+ +R+ TK T+P VWTN+CC HPL ES + A +
Sbjct: 39 LHLAFSSYVFDLHDQLLITRRAATKRTWPAVWTNSCCGHPLPGES---------LPGAIR 89
Query: 70 RKLLDELGICAEDVPVDEFTPLGRILYKAPSDGKWGEHELDYLLFIVRDVSVNPNPDEVA 129
R+L ELG+ + VD P R Y+A E+E+ + + D PN DEV
Sbjct: 90 RRLAAELGLTPDR--VDLILPGFR--YRAAMADGTVENEICPVYRVQVDQQPRPNSDEVD 145
Query: 130 EYKYVNREQLKELLRKADAGEEGLKLSPWFR 160
++++ EQ +R AG +SPW R
Sbjct: 146 AIRWLSWEQ---FVRDVTAGVIA-PVSPWCR 172
>sp|A5U3A5|IDI_MYCTA Isopentenyl-diphosphate Delta-isomerase OS=Mycobacterium
tuberculosis (strain ATCC 25177 / H37Ra) GN=idi PE=3
SV=1
Length = 203
Score = 72.8 bits (177), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 53/151 (35%), Positives = 78/151 (51%), Gaps = 17/151 (11%)
Query: 10 LHRAFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQ 69
LH AFS ++F+ +LL+ +R+ TK T+P VWTN+CC HPL ES + A +
Sbjct: 39 LHLAFSSYVFDLHDQLLITRRAATKRTWPAVWTNSCCGHPLPGES---------LPGAIR 89
Query: 70 RKLLDELGICAEDVPVDEFTPLGRILYKAPSDGKWGEHELDYLLFIVRDVSVNPNPDEVA 129
R+L ELG+ + VD P R Y+A E+E+ + + D PN DEV
Sbjct: 90 RRLAAELGLTPDR--VDLILPGFR--YRAAMADGTVENEICPVYRVQVDQQPRPNSDEVD 145
Query: 130 EYKYVNREQLKELLRKADAGEEGLKLSPWFR 160
++++ EQ +R AG +SPW R
Sbjct: 146 AIRWLSWEQ---FVRDVTAGVIA-PVSPWCR 172
>sp|A1T5G2|IDI_MYCVP Isopentenyl-diphosphate Delta-isomerase OS=Mycobacterium
vanbaalenii (strain DSM 7251 / PYR-1) GN=idi PE=3 SV=1
Length = 181
Score = 71.6 bits (174), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 50/150 (33%), Positives = 79/150 (52%), Gaps = 21/150 (14%)
Query: 10 LHRAFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQ 69
LH AFS +LF+ +LL +R+ K TFP +WTNTCC HP E+ +++A
Sbjct: 35 LHLAFSCYLFDDAGRVLLTRRAVHKRTFPGIWTNTCCGHPAPGEA---------LQDAVT 85
Query: 70 RKLLDELGICAEDVPVDEFTPLGRILYKAPSDGKWGEHELDYLLFIVRDVS-VNPNPDEV 128
R++ +ELG+ D+ L Y+A + E+E+ +F R V V+P+ DEV
Sbjct: 86 RRVREELGVGITDL----RCVLPDFRYRAVAADGVVENEV-CPVFCGRAVGQVHPDRDEV 140
Query: 129 AEYKYVNREQLKELLRKADAGEEGLKLSPW 158
A++ +V + ++ A E G +SPW
Sbjct: 141 ADHVWVPWQHMRA------AAEFGWAISPW 164
>sp|A4FK76|IDI_SACEN Isopentenyl-diphosphate Delta-isomerase OS=Saccharopolyspora
erythraea (strain NRRL 23338) GN=idi PE=3 SV=1
Length = 194
Score = 71.2 bits (173), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 49/151 (32%), Positives = 72/151 (47%), Gaps = 18/151 (11%)
Query: 10 LHRAFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQ 69
LH AFS ++FN + +LLL QR+ K T+P VWTNTCC HP +E+ + A
Sbjct: 29 LHLAFSCYVFNGRGQLLLTQRAHEKRTWPGVWTNTCCGHPAPQEA---------MPEAIT 79
Query: 70 RKLLDELGICAEDVPVDEFTPLGRILYKAPSDGKWGEHELDYLLFIVRDVSVNPNPDEVA 129
R+L +ELG+ D+ + L R Y+A E+E+ + D PN +EVA
Sbjct: 80 RRLGEELGLTVRDLTLV----LPRFRYRAVMGNGVVENEICPVFAAFTDDEPAPNREEVA 135
Query: 130 EYKYVNREQLKELLRKADAGEEGLKLSPWFR 160
+ + A+ +SPW R
Sbjct: 136 GTAWADWSGF-----SAEVLAGTTDISPWCR 161
>sp|A8LQ20|IDI_DINSH Isopentenyl-diphosphate Delta-isomerase OS=Dinoroseobacter shibae
(strain DFL 12) GN=idi PE=3 SV=1
Length = 176
Score = 70.9 bits (172), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 54/159 (33%), Positives = 79/159 (49%), Gaps = 28/159 (17%)
Query: 8 NLLHRAFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNA 67
L H+A SVF+ E L+Q+R+ K P +W NTCC+HPL+ ES +
Sbjct: 25 GLRHKAVSVFVMRGP-ETLIQRRALDKYHTPGLWANTCCTHPLWDESPA---------DC 74
Query: 68 AQRKLLDELGICAEDVPVDEFTPL--GRILYKAPSDGKWGEHELDYLLFIVR---DVSVN 122
A R+L +ELGI P RI Y+A EHE+ LFI ++ V
Sbjct: 75 AVRRLREELGITG-------LYPAHRDRIEYRADVGNGLIEHEV-VDLFIAEAPANLKVA 126
Query: 123 PNPDEVAEYKYVNREQLKELLRKADAGEEGLKLSPWFRL 161
PNP+EVAE K+V+ +L +++ + +PW R+
Sbjct: 127 PNPEEVAEVKWVDLYELNAQVKRRPE-----RYTPWLRI 160
>sp|Q7VEU0|IDI_MYCBO Isopentenyl-diphosphate Delta-isomerase OS=Mycobacterium bovis
(strain ATCC BAA-935 / AF2122/97) GN=idi PE=3 SV=1
Length = 176
Score = 70.1 bits (170), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 52/151 (34%), Positives = 77/151 (50%), Gaps = 17/151 (11%)
Query: 10 LHRAFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQ 69
LH AFS ++ + +LL+ +R+ TK T+P VWTN+CC HPL ES + A +
Sbjct: 39 LHLAFSSYVSDLHDQLLITRRAATKRTWPAVWTNSCCGHPLPGES---------LPGAIR 89
Query: 70 RKLLDELGICAEDVPVDEFTPLGRILYKAPSDGKWGEHELDYLLFIVRDVSVNPNPDEVA 129
R+L ELG+ + VD P R Y+A E+E+ + + D PN DEV
Sbjct: 90 RRLAAELGLTPDR--VDLILPGFR--YRAAMADGTVENEICPVYRVQVDQQPRPNSDEVD 145
Query: 130 EYKYVNREQLKELLRKADAGEEGLKLSPWFR 160
++++ EQ +R AG +SPW R
Sbjct: 146 AIRWLSWEQ---FVRDVTAGVIA-PVSPWCR 172
>sp|A5CV36|IDI_CLAM3 Isopentenyl-diphosphate Delta-isomerase OS=Clavibacter
michiganensis subsp. michiganensis (strain NCPPB 382)
GN=idi PE=3 SV=1
Length = 194
Score = 69.3 bits (168), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 49/152 (32%), Positives = 73/152 (48%), Gaps = 18/152 (11%)
Query: 10 LHRAFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQ 69
LH AFS +F+++ +L+ +R+ K+T+P VWTN+ C HP E +R A
Sbjct: 33 LHLAFSCHVFDAQGRILVTRRAIGKLTWPGVWTNSFCGHPAPDED---------MREAVH 83
Query: 70 RKLLDELGICAEDVPVDEFTPLGRILYKAPSDGKWGEHELDYLLFIVRDVSVNPNPDEVA 129
R+ ELG+ E V E L Y+A E+E+ + V V+P P+EV
Sbjct: 84 RRAEQELGLELESV---ELV-LPDFRYRATDAAGVVENEICPVFRAVAASPVDPRPEEVG 139
Query: 130 EYKYVNREQLKELLRKADAGEEGLKLSPWFRL 161
EY++V+ EQL + SPW L
Sbjct: 140 EYQWVDPEQLIPAV-----AHTPWAFSPWLTL 166
>sp|Q9Z5D3|IDI_RHOS4 Isopentenyl-diphosphate Delta-isomerase OS=Rhodobacter sphaeroides
(strain ATCC 17023 / 2.4.1 / NCIB 8253 / DSM 158) GN=idi
PE=3 SV=1
Length = 177
Score = 69.3 bits (168), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 53/165 (32%), Positives = 84/165 (50%), Gaps = 24/165 (14%)
Query: 1 MEKIES--LNLLHRAFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIE 58
+EK+E+ L H A SVF+ + +L+Q+R+ K P +W NTCC+HP + E
Sbjct: 16 VEKLEAHQRGLRHMAISVFVMAGE-AVLIQRRAAGKYHTPGLWANTCCTHPRWGEE---- 70
Query: 59 ENALGVRNAAQRKLLDELGICAEDVPVDEFTPLGRILYKAPSDGKWGEHEL--DYLLFIV 116
+ A R+L +ELGI V F R+ Y+A EHE+ ++
Sbjct: 71 -----AADCAVRRLREELGITGL---VTVFA--DRVEYRADVGNGLTEHEVVDIFVAEAP 120
Query: 117 RDVSVNPNPDEVAEYKYVNREQLKELLRKADAGEEGLKLSPWFRL 161
D+ VNP+P+EV E ++V+ L +L R+ E + +PW R+
Sbjct: 121 SDLPVNPDPEEVWETRWVD---LTDLAREVKEHPE--RFTPWLRI 160
>sp|A3PL07|IDI_RHOS1 Isopentenyl-diphosphate Delta-isomerase OS=Rhodobacter sphaeroides
(strain ATCC 17029 / ATH 2.4.9) GN=idi PE=3 SV=2
Length = 177
Score = 69.3 bits (168), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 53/165 (32%), Positives = 84/165 (50%), Gaps = 24/165 (14%)
Query: 1 MEKIES--LNLLHRAFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIE 58
+EK+E+ L H A SVF+ + +L+Q+R+ K P +W NTCC+HP + E
Sbjct: 16 VEKLEAHQRGLRHMAISVFVMAGE-AVLIQRRAAGKYHTPGLWANTCCTHPRWGEE---- 70
Query: 59 ENALGVRNAAQRKLLDELGICAEDVPVDEFTPLGRILYKAPSDGKWGEHEL--DYLLFIV 116
+ A R+L +ELGI V F R+ Y+A EHE+ ++
Sbjct: 71 -----AADCAVRRLREELGITGL---VTVFA--DRVEYRADVGNGLTEHEVVDIFVAEAP 120
Query: 117 RDVSVNPNPDEVAEYKYVNREQLKELLRKADAGEEGLKLSPWFRL 161
D+ VNP+P+EV E ++V+ L +L R+ E + +PW R+
Sbjct: 121 SDLPVNPDPEEVWETRWVD---LTDLAREVKEHPE--RFTPWLRI 160
>sp|B0RIB7|IDI_CLAMS Isopentenyl-diphosphate Delta-isomerase OS=Clavibacter
michiganensis subsp. sepedonicus (strain ATCC 33113 /
JCM 9667) GN=idi PE=3 SV=1
Length = 190
Score = 68.9 bits (167), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 49/152 (32%), Positives = 72/152 (47%), Gaps = 18/152 (11%)
Query: 10 LHRAFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQ 69
LH AFS +F+++ +L+ +R+ K+T+P VWTN+ C HP E L A
Sbjct: 33 LHLAFSCHVFDAEGRILVTRRAIGKLTWPGVWTNSFCGHPAPDEDML---------EAVH 83
Query: 70 RKLLDELGICAEDVPVDEFTPLGRILYKAPSDGKWGEHELDYLLFIVRDVSVNPNPDEVA 129
R+ ELG+ E V E L Y+A E+E+ + V V+P P+EV
Sbjct: 84 RRAEQELGLTLESV---ELV-LPDFRYRATDAAGVVENEICPVFRAVAATPVDPRPEEVG 139
Query: 130 EYKYVNREQLKELLRKADAGEEGLKLSPWFRL 161
EY++V+ EQL + SPW L
Sbjct: 140 EYQWVDPEQLIPAV-----AHTPWAFSPWLTL 166
>sp|B7UHT8|IDI_ECO27 Isopentenyl-diphosphate Delta-isomerase OS=Escherichia coli O127:H6
(strain E2348/69 / EPEC) GN=idi PE=3 SV=1
Length = 182
Score = 68.9 bits (167), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 53/158 (33%), Positives = 79/158 (50%), Gaps = 18/158 (11%)
Query: 8 NLLHRAFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNA 67
LLH AFS +LFN+K +LL+ +R+ +K +P VWTN+ C HP +L E NA A
Sbjct: 29 TLLHLAFSSWLFNAKGQLLVTRRALSKKAWPGVWTNSVCGHP-----QLGESNA----EA 79
Query: 68 AQRKLLDELGICAEDVPVDEFTPLGRILYKAPSDGKWGEHELDYLLFIVRDVSVNPNPDE 127
R+ ELG+ E P + P R Y+A E+E+ + + ++ N DE
Sbjct: 80 VIRRCRYELGV--EITPPESIYPGFR--YRATDPNGIVENEVCPVFAALTTSALQINDDE 135
Query: 128 VAEYKYVNREQLKELLRKADAGEEGLKLSPWFRLVVDN 165
V +Y++ + L +LR DA SPW + N
Sbjct: 136 VMDYQWCD---LAAVLRGIDATP--WAFSPWMVMQATN 168
>sp|A4WRA6|IDI_RHOS5 Isopentenyl-diphosphate Delta-isomerase OS=Rhodobacter sphaeroides
(strain ATCC 17025 / ATH 2.4.3) GN=idi PE=3 SV=2
Length = 177
Score = 68.6 bits (166), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 54/180 (30%), Positives = 93/180 (51%), Gaps = 31/180 (17%)
Query: 1 MEKIES--LNLLHRAFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIE 58
+EK+E+ L H+A SVF+ + +L+Q+R+ K P +W NTCC+HP + E+
Sbjct: 16 VEKLEAHQRGLRHKAISVFVMAGE-SVLIQRRAAGKYHTPGLWANTCCTHPRWGEA---- 70
Query: 59 ENALGVRNAAQRKLLDELGICAEDVPVDEFTPLGRILYKAPSDGKWGEHEL--DYLLFIV 116
+ A R+L +ELGI V F ++ Y+A EHE+ ++
Sbjct: 71 -----AADCAVRRLREELGITGL---VTVFA--DQVEYRADVGSGLIEHEVVDIFVAEAP 120
Query: 117 RDVSVNPNPDEVAEYKYVNREQLKELLRKADAGEEGLKLSPWFRLVVDNFLFKWWDHLEK 176
+D+ V P+P+EV E ++V+ L +L R+ + E + +PW R+ + DH+E+
Sbjct: 121 QDLPVAPDPEEVWETRWVD---LHDLAREVEEHPE--RFTPWLRIYLA-------DHMER 168
>sp|B9KK15|IDI_RHOSK Isopentenyl-diphosphate Delta-isomerase OS=Rhodobacter sphaeroides
(strain KD131 / KCTC 12085) GN=idi PE=3 SV=1
Length = 177
Score = 68.2 bits (165), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 53/165 (32%), Positives = 84/165 (50%), Gaps = 24/165 (14%)
Query: 1 MEKIES--LNLLHRAFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIE 58
+EK+E+ L H A SVF+ + +L+Q+R+ K P +W NTCC+HP + E
Sbjct: 16 VEKLEAHQRGLRHMAISVFVMAGE-AVLIQRRAAGKYHTPGLWANTCCTHPRWGEE---- 70
Query: 59 ENALGVRNAAQRKLLDELGICAEDVPVDEFTPLGRILYKAPSDGKWGEHEL--DYLLFIV 116
+ A R+L +ELGI V F R+ Y+A EHE+ ++
Sbjct: 71 -----AADCAVRRLREELGITGL---VTVFA--DRVEYRADVGNGLIEHEVVDIFVAEAP 120
Query: 117 RDVSVNPNPDEVAEYKYVNREQLKELLRKADAGEEGLKLSPWFRL 161
D+ VNP+P+EV E ++V+ L +L R+ E + +PW R+
Sbjct: 121 SDLPVNPDPEEVWETRWVD---LTDLAREVKEHPE--RFTPWLRI 160
>sp|Q5P011|IDI1_AROAE Isopentenyl-diphosphate Delta-isomerase 1 OS=Aromatoleum aromaticum
(strain EbN1) GN=idi1 PE=3 SV=1
Length = 177
Score = 67.4 bits (163), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 53/159 (33%), Positives = 77/159 (48%), Gaps = 22/159 (13%)
Query: 10 LHRAFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQ 69
LHRA S+F+F+S LLLQ+R+ +K +W+NTCCSHP AA+
Sbjct: 29 LHRAISIFIFDSADRLLLQKRAASKYHSAGLWSNTCCSHP---------RPREECARAAR 79
Query: 70 RKLLDELGI-CAEDVPVDEFTPLGRILYKAPSDGKWGEHELDYLLFIVRDVSVNPNPDEV 128
R+L +E+GI C DV +Y+A E+E D++ F D PNPDE
Sbjct: 80 RRLREEMGIACELDVKFG-------FVYRAVLTNHLIENEFDHVFFGRHDGDPVPNPDEA 132
Query: 129 AEYKYVNREQLKELLRKADAGEEGLKLSPWFRLVVDNFL 167
++K+V+ L +AD E S W +D +
Sbjct: 133 EDWKWVDLAWL-----RADLNERPHAYSFWLEACIDRVI 166
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.320 0.138 0.422
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 73,924,112
Number of Sequences: 539616
Number of extensions: 3196567
Number of successful extensions: 7240
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 121
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 7053
Number of HSP's gapped (non-prelim): 129
length of query: 192
length of database: 191,569,459
effective HSP length: 111
effective length of query: 81
effective length of database: 131,672,083
effective search space: 10665438723
effective search space used: 10665438723
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 58 (26.9 bits)