Query 029516
Match_columns 192
No_of_seqs 243 out of 1418
Neff 7.2
Searched_HMMs 46136
Date Fri Mar 29 14:09:59 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029516.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/029516hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02552 isopentenyl-diphospha 100.0 6E-37 1.3E-41 256.0 18.8 182 5-192 50-247 (247)
2 KOG0142 Isopentenyl pyrophosph 100.0 2.4E-37 5.3E-42 246.3 10.8 183 1-191 43-225 (225)
3 COG1443 Idi Isopentenyldiphosp 100.0 3.9E-30 8.4E-35 201.5 10.9 144 7-166 28-172 (185)
4 cd02885 IPP_Isomerase Isopente 100.0 2.6E-28 5.6E-33 192.5 15.4 143 3-163 21-164 (165)
5 PRK03759 isopentenyl-diphospha 100.0 3.3E-27 7.2E-32 189.5 16.6 146 3-166 25-171 (184)
6 TIGR02150 IPP_isom_1 isopenten 100.0 3.2E-27 6.9E-32 185.3 15.4 139 3-162 18-157 (158)
7 cd03676 Nudix_hydrolase_3 Memb 99.9 1.4E-26 3E-31 184.9 15.9 149 3-169 24-178 (180)
8 cd04692 Nudix_Hydrolase_33 Mem 99.9 3.8E-26 8.1E-31 176.0 14.8 135 10-161 1-141 (144)
9 PLN02791 Nudix hydrolase homol 99.9 4.8E-24 1E-28 200.7 17.6 140 3-159 24-170 (770)
10 cd04697 Nudix_Hydrolase_38 Mem 99.9 1.3E-23 2.8E-28 158.4 14.0 116 12-146 1-116 (126)
11 PRK15393 NUDIX hydrolase YfcD; 99.9 3.3E-23 7.2E-28 166.0 16.5 138 3-168 29-166 (180)
12 cd04693 Nudix_Hydrolase_34 Mem 99.9 2.6E-23 5.7E-28 156.4 13.4 123 12-160 1-124 (127)
13 PRK15472 nucleoside triphospha 99.9 1.2E-21 2.7E-26 150.0 13.8 122 10-142 2-125 (141)
14 PRK09438 nudB dihydroneopterin 99.9 1.6E-20 3.5E-25 144.9 13.9 130 10-168 6-144 (148)
15 PF00293 NUDIX: NUDIX domain; 99.8 3.5E-20 7.5E-25 138.6 13.6 120 10-146 1-123 (134)
16 PRK15434 GDP-mannose mannosyl 99.8 8.4E-20 1.8E-24 143.8 14.8 118 10-142 16-137 (159)
17 cd04682 Nudix_Hydrolase_23 Mem 99.8 4.6E-20 9.9E-25 137.9 11.5 111 11-142 1-114 (122)
18 cd04681 Nudix_Hydrolase_22 Mem 99.8 8.3E-20 1.8E-24 137.4 12.9 127 12-166 2-129 (130)
19 cd04694 Nudix_Hydrolase_35 Mem 99.8 1.9E-19 4.2E-24 139.3 14.6 124 12-146 2-135 (143)
20 cd04679 Nudix_Hydrolase_20 Mem 99.8 1.5E-19 3.2E-24 135.4 13.5 114 11-144 2-117 (125)
21 cd04696 Nudix_Hydrolase_37 Mem 99.8 2E-19 4.2E-24 134.9 13.8 111 12-142 3-114 (125)
22 cd03426 CoAse Coenzyme A pyrop 99.8 9.6E-20 2.1E-24 142.6 12.0 113 10-142 1-118 (157)
23 cd03673 Ap6A_hydrolase Diadeno 99.8 4.5E-19 9.8E-24 132.7 15.0 123 12-166 2-129 (131)
24 cd03430 GDPMH GDP-mannose glyc 99.8 2.8E-19 6E-24 138.2 13.5 117 11-142 12-132 (144)
25 cd04684 Nudix_Hydrolase_25 Con 99.8 3.8E-19 8.3E-24 132.6 13.3 112 13-142 2-117 (128)
26 cd03424 ADPRase_NUDT5 ADP-ribo 99.8 7.3E-19 1.6E-23 133.5 14.7 116 10-146 1-119 (137)
27 cd03674 Nudix_Hydrolase_1 Memb 99.8 8.9E-19 1.9E-23 134.0 15.2 131 10-167 1-137 (138)
28 cd04664 Nudix_Hydrolase_7 Memb 99.8 5.8E-19 1.3E-23 132.9 13.3 112 12-144 2-120 (129)
29 cd04700 DR1025_like DR1025 fro 99.8 9.2E-19 2E-23 134.8 14.0 119 7-146 9-129 (142)
30 cd04683 Nudix_Hydrolase_24 Mem 99.8 7.3E-19 1.6E-23 130.5 12.7 114 13-145 2-117 (120)
31 cd03427 MTH1 MutT homolog-1 (M 99.8 9.1E-19 2E-23 132.8 13.0 123 12-167 2-125 (137)
32 cd04678 Nudix_Hydrolase_19 Mem 99.8 9.9E-19 2.1E-23 131.5 12.8 112 11-142 2-117 (129)
33 cd03671 Ap4A_hydrolase_plant_l 99.8 2.1E-18 4.5E-23 133.3 14.7 116 10-144 2-133 (147)
34 cd04691 Nudix_Hydrolase_32 Mem 99.8 1.4E-18 3E-23 129.5 12.8 108 14-145 3-111 (117)
35 cd04673 Nudix_Hydrolase_15 Mem 99.8 2.2E-18 4.7E-23 127.7 13.2 112 13-143 2-115 (122)
36 cd03675 Nudix_Hydrolase_2 Cont 99.8 5.5E-18 1.2E-22 128.2 15.2 125 14-168 3-129 (134)
37 cd03429 NADH_pyrophosphatase N 99.8 1.5E-18 3.2E-23 131.9 11.9 105 13-142 2-107 (131)
38 cd04680 Nudix_Hydrolase_21 Mem 99.8 2.2E-18 4.8E-23 127.4 12.1 105 13-142 2-108 (120)
39 cd04677 Nudix_Hydrolase_18 Mem 99.8 1.7E-18 3.6E-23 130.3 10.5 113 10-144 6-124 (132)
40 cd04699 Nudix_Hydrolase_39 Mem 99.8 6.1E-18 1.3E-22 126.3 13.4 116 12-145 2-117 (129)
41 PRK00714 RNA pyrophosphohydrol 99.8 1.5E-17 3.4E-22 130.2 16.0 119 6-144 3-137 (156)
42 cd04670 Nudix_Hydrolase_12 Mem 99.8 8.4E-18 1.8E-22 126.2 13.2 108 11-141 2-112 (127)
43 cd04676 Nudix_Hydrolase_17 Mem 99.8 7.2E-18 1.6E-22 125.3 11.5 110 11-142 2-117 (129)
44 cd04689 Nudix_Hydrolase_30 Mem 99.8 1.9E-17 4.1E-22 124.0 12.9 108 11-140 1-112 (125)
45 cd04688 Nudix_Hydrolase_29 Mem 99.7 2.4E-17 5.3E-22 123.5 12.5 109 11-142 2-118 (126)
46 cd03672 Dcp2p mRNA decapping e 99.7 5E-17 1.1E-21 125.9 14.4 108 13-146 3-115 (145)
47 PRK10546 pyrimidine (deoxy)nuc 99.7 7.2E-17 1.6E-21 122.1 14.3 121 13-168 6-127 (135)
48 cd04690 Nudix_Hydrolase_31 Mem 99.7 4.4E-17 9.6E-22 120.4 12.8 108 13-141 2-109 (118)
49 cd03428 Ap4A_hydrolase_human_l 99.7 6.8E-17 1.5E-21 121.3 13.8 111 11-144 2-117 (130)
50 PRK10776 nucleoside triphospha 99.7 5.6E-17 1.2E-21 120.9 13.2 121 12-166 5-126 (129)
51 PLN02325 nudix hydrolase 99.7 5.9E-17 1.3E-21 125.3 13.6 114 10-142 8-125 (144)
52 PLN02839 nudix hydrolase 99.7 5.1E-17 1.1E-21 141.6 14.7 145 7-169 199-348 (372)
53 cd04687 Nudix_Hydrolase_28 Mem 99.7 6.2E-17 1.3E-21 121.8 13.2 112 12-142 2-121 (128)
54 cd04695 Nudix_Hydrolase_36 Mem 99.7 1.2E-16 2.6E-21 121.0 13.7 105 20-144 11-116 (131)
55 cd04671 Nudix_Hydrolase_13 Mem 99.7 5.4E-17 1.2E-21 122.2 11.8 105 13-142 2-110 (123)
56 cd03425 MutT_pyrophosphohydrol 99.7 1.2E-16 2.6E-21 117.6 12.8 108 13-142 3-110 (124)
57 cd04666 Nudix_Hydrolase_9 Memb 99.7 3.5E-16 7.5E-21 117.8 14.0 113 13-145 2-118 (122)
58 cd04672 Nudix_Hydrolase_14 Mem 99.7 1.4E-16 3E-21 119.2 11.6 111 12-144 3-114 (123)
59 PRK00241 nudC NADH pyrophospha 99.7 7.7E-17 1.7E-21 135.9 11.3 104 13-142 134-238 (256)
60 cd04669 Nudix_Hydrolase_11 Mem 99.7 1.1E-16 2.4E-21 119.8 10.8 102 14-142 3-114 (121)
61 cd04685 Nudix_Hydrolase_26 Mem 99.7 3.9E-16 8.3E-21 119.3 13.1 116 12-142 1-123 (133)
62 cd04667 Nudix_Hydrolase_10 Mem 99.7 3.2E-16 6.9E-21 115.4 11.7 95 20-144 8-103 (112)
63 cd02883 Nudix_Hydrolase Nudix 99.7 5.6E-16 1.2E-20 112.9 12.2 110 13-143 2-113 (123)
64 PRK10707 putative NUDIX hydrol 99.7 7.1E-16 1.5E-20 124.7 13.1 105 21-143 42-147 (190)
65 TIGR00586 mutt mutator mutT pr 99.7 1.9E-15 4.1E-20 112.9 13.4 110 11-142 4-113 (128)
66 cd04511 Nudix_Hydrolase_4 Memb 99.7 1.3E-15 2.9E-20 115.1 11.8 103 12-140 14-117 (130)
67 COG1051 ADP-ribose pyrophospha 99.7 1.6E-15 3.5E-20 117.7 11.8 112 11-143 10-123 (145)
68 PRK11762 nudE adenosine nucleo 99.7 8.4E-15 1.8E-19 117.6 16.3 113 13-146 49-163 (185)
69 cd04661 MRP_L46 Mitochondrial 99.7 9.9E-16 2.1E-20 116.5 10.2 108 22-144 12-122 (132)
70 PRK05379 bifunctional nicotina 99.6 6.9E-15 1.5E-19 128.6 16.0 133 11-167 203-338 (340)
71 cd04686 Nudix_Hydrolase_27 Mem 99.6 6.7E-15 1.4E-19 111.7 13.6 112 13-144 2-121 (131)
72 PLN02709 nudix hydrolase 99.6 4.3E-15 9.3E-20 122.5 12.6 117 8-142 30-155 (222)
73 TIGR00052 nudix-type nucleosid 99.6 5.5E-14 1.2E-18 113.2 11.9 114 13-146 46-169 (185)
74 PRK10729 nudF ADP-ribose pyrop 99.5 2.7E-13 5.9E-18 110.6 15.6 114 13-146 51-175 (202)
75 PRK08999 hypothetical protein; 99.5 1E-13 2.2E-18 119.2 13.8 110 11-142 5-114 (312)
76 COG2816 NPY1 NTP pyrophosphohy 99.5 3.1E-14 6.8E-19 120.1 7.9 132 12-170 145-277 (279)
77 cd04662 Nudix_Hydrolase_5 Memb 99.5 1.3E-12 2.8E-17 99.1 12.3 59 13-81 2-65 (126)
78 KOG3084 NADH pyrophosphatase I 99.5 5.5E-14 1.2E-18 119.6 5.1 140 12-174 188-334 (345)
79 PRK15009 GDP-mannose pyrophosp 99.4 4.7E-12 1E-16 102.5 15.3 114 12-146 46-170 (191)
80 TIGR02705 nudix_YtkD nucleosid 99.4 3.2E-12 6.8E-17 100.4 13.7 114 13-161 26-140 (156)
81 cd04665 Nudix_Hydrolase_8 Memb 99.4 1.8E-12 4E-17 97.3 11.5 101 13-140 2-103 (118)
82 cd04674 Nudix_Hydrolase_16 Mem 99.4 2.1E-11 4.5E-16 91.6 12.3 55 14-81 7-61 (118)
83 cd03670 ADPRase_NUDT9 ADP-ribo 99.3 2.1E-11 4.6E-16 98.3 11.6 103 24-142 50-171 (186)
84 cd04663 Nudix_Hydrolase_6 Memb 99.3 3.4E-11 7.4E-16 91.4 10.7 51 14-80 3-55 (126)
85 COG0494 MutT NTP pyrophosphohy 99.2 7.4E-11 1.6E-15 87.4 10.3 115 13-144 13-136 (161)
86 KOG4313 Thiamine pyrophosphoki 99.2 9E-12 2E-16 103.0 5.4 126 24-167 149-276 (306)
87 KOG3069 Peroxisomal NUDIX hydr 99.2 5.9E-11 1.3E-15 97.6 9.0 113 12-142 44-163 (246)
88 KOG2839 Diadenosine and diphos 99.2 3E-10 6.5E-15 87.1 10.6 128 9-169 7-141 (145)
89 PLN03143 nudix hydrolase; Prov 99.2 3.7E-10 8.1E-15 96.7 12.3 116 13-146 130-269 (291)
90 cd03431 DNA_Glycosylase_C DNA 99.1 3.8E-09 8.1E-14 77.2 13.8 100 14-142 5-105 (118)
91 KOG0648 Predicted NUDIX hydrol 98.8 3.3E-09 7E-14 90.4 4.1 117 11-145 115-234 (295)
92 KOG3041 Nucleoside diphosphate 98.5 3.5E-06 7.6E-11 68.0 12.2 114 13-146 75-198 (225)
93 PF14815 NUDIX_4: NUDIX domain 98.2 3.6E-06 7.9E-11 61.9 6.5 100 16-142 2-103 (114)
94 COG4119 Predicted NTP pyrophos 98.1 5E-05 1.1E-09 57.5 9.9 119 12-146 4-139 (161)
95 COG4112 Predicted phosphoester 97.7 0.00072 1.5E-08 53.3 10.9 133 15-165 65-201 (203)
96 KOG4195 Transient receptor pot 96.7 0.0017 3.8E-08 53.5 4.0 39 24-77 140-178 (275)
97 PRK10880 adenine DNA glycosyla 96.7 0.027 5.8E-07 49.8 11.6 34 10-44 229-262 (350)
98 PF13869 NUDIX_2: Nucleotide h 95.7 0.025 5.5E-07 45.7 5.5 122 6-146 39-174 (188)
99 PF14443 DBC1: DBC1 94.3 0.36 7.8E-06 36.6 7.9 68 24-101 9-77 (126)
100 KOG4432 Uncharacterized NUDIX 93.4 0.56 1.2E-05 40.7 8.4 87 46-148 290-382 (405)
101 KOG2937 Decapping enzyme compl 92.0 0.036 7.7E-07 48.3 -0.6 101 13-140 84-190 (348)
102 KOG4548 Mitochondrial ribosoma 91.1 0.98 2.1E-05 38.1 7.0 107 24-145 140-250 (263)
103 KOG1689 mRNA cleavage factor I 90.3 0.74 1.6E-05 36.8 5.3 58 7-80 66-125 (221)
104 PRK13910 DNA glycosylase MutY; 86.6 1.2 2.6E-05 38.4 4.7 30 12-44 187-216 (289)
105 KOG4432 Uncharacterized NUDIX 84.8 2.2 4.9E-05 37.1 5.4 39 46-98 85-123 (405)
106 COG1194 MutY A/G-specific DNA 69.9 2.8 6.1E-05 37.0 1.8 33 11-44 235-267 (342)
107 TIGR01084 mutY A/G-specific ad 62.9 30 0.00065 29.6 6.7 10 35-44 250-259 (275)
108 PF03487 IL13: Interleukin-13; 51.8 14 0.00031 22.3 2.0 22 46-76 15-36 (43)
109 PF07494 Reg_prop: Two compone 30.7 57 0.0012 16.9 2.1 18 11-28 4-21 (24)
110 KOG1202 Animal-type fatty acid 30.2 45 0.00098 34.9 2.9 19 64-82 277-295 (2376)
111 PF09505 Dimeth_Pyl: Dimethyla 23.1 51 0.0011 29.3 1.6 24 48-80 408-431 (466)
112 PF12967 DUF3855: Domain of Un 21.1 1.3E+02 0.0029 22.7 3.3 30 64-96 20-49 (158)
No 1
>PLN02552 isopentenyl-diphosphate delta-isomerase
Probab=100.00 E-value=6e-37 Score=255.99 Aligned_cols=182 Identities=79% Similarity=1.282 Sum_probs=156.6
Q ss_pred ccCCcceEEEEEEEEeCCceEEEeeecCCCCCCCCCccccccccCCCCCCh--------hhhhhhhcHHHHHHHHHHHHh
Q 029516 5 ESLNLLHRAFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESE--------LIEENALGVRNAAQRKLLDEL 76 (192)
Q Consensus 5 ~~~~~~h~av~v~i~~~~~~lLL~~R~~~k~~~pg~W~~p~gG~ve~gEs~--------~~~~~~~~~~eaa~REl~EEt 76 (192)
..+|++||+|+|+|+|++|+||||||+..|..|||+|++++|||+..||++ ++.+++.|+.+||+|||.|||
T Consensus 50 ~~~gl~Hra~~v~i~n~~g~lLLQkRs~~K~~~Pg~Wd~s~~GHp~~ge~~~e~~~e~~~~~~~~~~~~eAA~REL~EEl 129 (247)
T PLN02552 50 EPRGLLHRAFSVFLFNSKYELLLQQRAATKVTFPLVWTNTCCSHPLYGQDPNEVDRESELIDGNVLGVKNAAQRKLLHEL 129 (247)
T ss_pred cCCCceEEEEEEEEEcCCCeEEEEEecCCCCCCCcceecccCCccccccccccccccccccccchhhHHHHHHhHHHHHh
Confidence 358999999999999999999999999999999999999999999998553 224555668899999999999
Q ss_pred CCCCCCCCCCceeeeeEEEEEccCC------CCcceeEEEEEEEEee--CCccCCCccccccEEEecHHHHHHHHHhhcC
Q 029516 77 GICAEDVPVDEFTPLGRILYKAPSD------GKWGEHELDYLLFIVR--DVSVNPNPDEVAEYKYVNREQLKELLRKADA 148 (192)
Q Consensus 77 Gl~~~~~~~~~l~~~~~~~~~~~~~------~~~~~~~~~~~f~~~~--~~~~~~~~~Ev~~~~Wv~~~el~~~~~~~~~ 148 (192)
||.+..++++++.+++++.|..+.. +++.+++++++|+... ...+.++++|+.+++|++++++.+++...
T Consensus 130 GI~~~~~~~~~l~~~~~~~y~~~~~~~~~~~~~~~E~e~~~v~~~~~~~~~~l~lq~eEV~~~~wvs~~el~~~~~~~-- 207 (247)
T PLN02552 130 GIPAEDVPVDQFTFLTRLHYKAADDVTHGPDGKWGEHELDYLLFIRPVRDVKVNPNPDEVADVKYVNREELKEMMRKE-- 207 (247)
T ss_pred CCCccccccccceeeeEEEEecccccccccCCCccceEEEEEEEEEecCCCcccCCHHHhheEEEEeHHHHHHHHhhc--
Confidence 9998766666788888888877654 5666788888776532 34778899999999999999999998753
Q ss_pred CCCCcccChhHHHHHHHHHHHHHHHhcccccccccCCCceeecC
Q 029516 149 GEEGLKLSPWFRLVVDNFLFKWWDHLEKGTLNEVIDMKTIHKLT 192 (192)
Q Consensus 149 ~~~~~~~~p~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 192 (192)
.+..|+||++.++++|+..||+.++++ .+++||+.||||.
T Consensus 208 --~~~~~tpw~~~~~~~~l~~w~~~~~~~--~~~~~~~~i~~~~ 247 (247)
T PLN02552 208 --SGLKLSPWFRLIVDNFLMKWWDDLEKG--TEAVDMKTIHKLM 247 (247)
T ss_pred --CCcccCHHHHHHHHHHHHHHHhhhcch--hhccChhhheecC
Confidence 367899999999999999999999999 9999999999983
No 2
>KOG0142 consensus Isopentenyl pyrophosphate:dimethylallyl pyrophosphate isomerase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=2.4e-37 Score=246.27 Aligned_cols=183 Identities=67% Similarity=1.135 Sum_probs=167.5
Q ss_pred CcccccCCcceEEEEEEEEeCCceEEEeeecCCCCCCCCCccccccccCCCCCChhhhhhhhcHHHHHHHHHHHHhCCCC
Q 029516 1 MEKIESLNLLHRAFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICA 80 (192)
Q Consensus 1 ~~~~~~~~~~h~av~v~i~~~~~~lLL~~R~~~k~~~pg~W~~p~gG~ve~gEs~~~~~~~~~~~eaa~REl~EEtGl~~ 80 (192)
|+.+.+. ..|||++||++|+++++||||||..|.+||+.|++.|++|+-.....+.+.+++|+..||+|.|.-|+||..
T Consensus 43 ~eni~kg-lLHRaFSVFlFns~~~lLlQqRS~~KitFP~~~TNtccSHPL~~~~el~~~d~lGVr~AAqRkL~~ELGIp~ 121 (225)
T KOG0142|consen 43 MENIEKG-LLHRAFSVFLFNSKNELLLQQRSDEKITFPGLWTNTCCSHPLYNPGELEENDALGVRRAAQRKLKAELGIPL 121 (225)
T ss_pred chhHHhh-hhhheeeEEEecCcchHHHhhhccccccccchhhhhhhcCcCCChhhhccCchHHHHHHHHHHHHHhhCCCc
Confidence 3444444 899999999999999999999999999999999999999998554444677899999999999999999999
Q ss_pred CCCCCCceeeeeEEEEEccCCCCcceeEEEEEEEEeeCCccCCCccccccEEEecHHHHHHHHHhhcCCCCCcccChhHH
Q 029516 81 EDVPVDEFTPLGRILYKAPSDGKWGEHELDYLLFIVRDVSVNPNPDEVAEYKYVNREQLKELLRKADAGEEGLKLSPWFR 160 (192)
Q Consensus 81 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~Ev~~~~Wv~~~el~~~~~~~~~~~~~~~~~p~~~ 160 (192)
..++++++.++++++|++++++.|++|+++|+.+...+..++|+++|+.+++||+.+||+++++.. +..|+|||.
T Consensus 122 e~v~pee~~~ltrihYkA~sdg~wGEhEiDYiL~~~~~~~~nPnpnEv~e~ryvs~eelkel~~~~-----~~~~TPWfk 196 (225)
T KOG0142|consen 122 EEVPPEEFNFLTRIHYKAPSDGIWGEHEIDYILFLVKDVTLNPNPNEVSEIRYVSREELKELVAKA-----SAGFTPWFK 196 (225)
T ss_pred cccCHHHcccceeeeeecCCCCCcccceeeEEEEEeccCCCCCChhhhhHhheecHHHHHHHHhcc-----ccCCChHHH
Confidence 999999999999999999999999999999999998899999999999999999999999999986 346999999
Q ss_pred HHHHHHHHHHHHHhcccccccccCCCceeec
Q 029516 161 LVVDNFLFKWWDHLEKGTLNEVIDMKTIHKL 191 (192)
Q Consensus 161 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 191 (192)
.+.++|+++||+.+++ +++|.++..||++
T Consensus 197 li~~~~l~~WW~~l~~--~~~~~~~~~i~r~ 225 (225)
T KOG0142|consen 197 LISENFLFKWWDDLDK--LTEFEEDTNIHRL 225 (225)
T ss_pred HHHHHHHHHHHhhhcc--cccCccccccccC
Confidence 9999999999999987 5789999999985
No 3
>COG1443 Idi Isopentenyldiphosphate isomerase [Lipid metabolism]
Probab=99.97 E-value=3.9e-30 Score=201.48 Aligned_cols=144 Identities=43% Similarity=0.676 Sum_probs=133.4
Q ss_pred CCc-ceEEEEEEEEeCCceEEEeeecCCCCCCCCCccccccccCCCCCChhhhhhhhcHHHHHHHHHHHHhCCCCCCCCC
Q 029516 7 LNL-LHRAFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPV 85 (192)
Q Consensus 7 ~~~-~h~av~v~i~~~~~~lLL~~R~~~k~~~pg~W~~p~gG~ve~gEs~~~~~~~~~~~eaa~REl~EEtGl~~~~~~~ 85 (192)
+++ +|+|++++|||.+|++||+||+..|.+|||.|+++|+||..+||| ..+||+|.+.+|+||.+.. .
T Consensus 28 d~~~LHrAFS~~lFne~g~LLltrRA~~K~twP~vWTNSvCsHP~~~es---------~~~A~~rRl~~ELGie~~~--~ 96 (185)
T COG1443 28 DTPRLHRAFSSFLFNERGQLLLTRRALSKKTWPGVWTNSVCSHPLPGES---------NEDAARRRLAYELGIEPDQ--Y 96 (185)
T ss_pred ccHHHHhhhheeEECCCCceeeehhhhhcccCcccccccccCCCcCCCc---------hHHHHHHHHHHHhCCCCcc--c
Confidence 456 799999999999999999999999999999999999999999999 8999999999999999875 3
Q ss_pred CceeeeeEEEEEccCCCCcceeEEEEEEEEeeCCccCCCccccccEEEecHHHHHHHHHhhcCCCCCcccChhHHHHHHH
Q 029516 86 DEFTPLGRILYKAPSDGKWGEHELDYLLFIVRDVSVNPNPDEVAEYKYVNREQLKELLRKADAGEEGLKLSPWFRLVVDN 165 (192)
Q Consensus 86 ~~l~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~Ev~~~~Wv~~~el~~~~~~~~~~~~~~~~~p~~~~~~~~ 165 (192)
+.+.++.++.|+.++.+++.++++|+++++..+..+.++++|+.+++|++++++.++.... +..|+|||..+..+
T Consensus 97 d~~~il~rf~YrA~~~~~~~E~Eic~V~~~~~~~~~~~npdEV~~~~wv~~e~l~~~~~~~-----~~~fsPW~~~~~~~ 171 (185)
T COG1443 97 DKLEILPRFRYRAADPDGIVENEICPVLAARLDSALDPNPDEVMDYRWVSPEDLKEMVDAT-----PWAFSPWFVIQAEN 171 (185)
T ss_pred CccccccceEEeccCCCCcceeeeeeEEEEeecCCCCCChHHhhheeccCHHHHHHhhcCC-----ceeeChHHHHHhcc
Confidence 4567788999999999999999999999998877888999999999999999999999875 56799999999998
Q ss_pred H
Q 029516 166 F 166 (192)
Q Consensus 166 ~ 166 (192)
+
T Consensus 172 ~ 172 (185)
T COG1443 172 D 172 (185)
T ss_pred h
Confidence 8
No 4
>cd02885 IPP_Isomerase Isopentenyl diphosphate (IPP) isomerase, a member of the Nudix hydrolase superfamily, is a key enzyme in the isoprenoid biosynthetic pathway. Isoprenoids comprise a large family of natural products including sterols, carotenoids, dolichols and prenylated proteins. These compounds are synthesized from two precursors: isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP). IPP isomerase catalyzes the interconversion of IPP and DMAPP by a stereoselective antarafacial transposition of hydrogen. The enzyme requires one Mn2+ or Mg2+ ion in its active site to fold into an active conformation and also contains the Nudix motif, a highly conserved 23-residue block (GX5EX7REUXEEXGU, where U = I, L or V), that functions as a metal binding and catalytic site. The metal binding site is present within the active site and plays structural and catalytical roles. IPP isomerase is well represented in several bacteria, archaebacteria and eukaryotes, including fungi, mamm
Probab=99.96 E-value=2.6e-28 Score=192.50 Aligned_cols=143 Identities=54% Similarity=0.889 Sum_probs=117.8
Q ss_pred ccccCCcc-eEEEEEEEEeCCceEEEeeecCCCCCCCCCccccccccCCCCCChhhhhhhhcHHHHHHHHHHHHhCCCCC
Q 029516 3 KIESLNLL-HRAFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAE 81 (192)
Q Consensus 3 ~~~~~~~~-h~av~v~i~~~~~~lLL~~R~~~k~~~pg~W~~p~gG~ve~gEs~~~~~~~~~~~eaa~REl~EEtGl~~~ 81 (192)
.+|..+.+ |++|+++|+|++|++||+||+..+..+||.|++|+||++++||| +++||+||++||||+.+.
T Consensus 21 ~~~~~~~~~~~~v~v~i~~~~~~iLl~kR~~~~~~~Pg~w~~~~gG~ie~GEt---------~~eaa~REl~EEtGl~~~ 91 (165)
T cd02885 21 EAHLKGTLLHRAFSVFLFNSKGRLLLQRRALSKYTFPGLWTNTCCSHPLPGEG---------VKDAAQRRLREELGITGD 91 (165)
T ss_pred HHhhcCCcceeEEEEEEEcCCCcEEEEeccCCCccCCCcccccccCCCCCCCC---------HHHHHHHHHHHHhCCCcc
Confidence 56788888 99999999999999999999988888999999988999999999 899999999999999986
Q ss_pred CCCCCceeeeeEEEEEccCCCCcceeEEEEEEEEeeCCccCCCccccccEEEecHHHHHHHHHhhcCCCCCcccChhHHH
Q 029516 82 DVPVDEFTPLGRILYKAPSDGKWGEHELDYLLFIVRDVSVNPNPDEVAEYKYVNREQLKELLRKADAGEEGLKLSPWFRL 161 (192)
Q Consensus 82 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~Ev~~~~Wv~~~el~~~~~~~~~~~~~~~~~p~~~~ 161 (192)
.... . ++.+.|..+.......+.+.++|.+.......++++|+.+++|++++++.+++.++ ++.++||++.
T Consensus 92 ~~~~---~-~~~~~~~~~~~~~~~~~~i~~~f~~~~~~~~~~~~~Ev~~~~w~~~~el~~~~~~~-----~~~~~~~~~~ 162 (165)
T cd02885 92 LLEL---V-LPRFRYRAPDDGGLVEHEIDHVFFARADVTLIPNPDEVSEYRWVSLEDLKELVAAA-----PEAFTPWFRL 162 (165)
T ss_pred chhh---c-cceEEEEEEcCCCceeeEEEEEEEEEeCCCCCCCccceeEEEEECHHHHHHHHHhC-----chhcCHHHHH
Confidence 4321 1 35555654433333345667777776655556678899999999999999999886 6899999998
Q ss_pred HH
Q 029516 162 VV 163 (192)
Q Consensus 162 ~~ 163 (192)
++
T Consensus 163 ~~ 164 (165)
T cd02885 163 IL 164 (165)
T ss_pred Hh
Confidence 76
No 5
>PRK03759 isopentenyl-diphosphate delta-isomerase; Provisional
Probab=99.95 E-value=3.3e-27 Score=189.49 Aligned_cols=146 Identities=33% Similarity=0.553 Sum_probs=116.7
Q ss_pred ccc-cCCcceEEEEEEEEeCCceEEEeeecCCCCCCCCCccccccccCCCCCChhhhhhhhcHHHHHHHHHHHHhCCCCC
Q 029516 3 KIE-SLNLLHRAFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAE 81 (192)
Q Consensus 3 ~~~-~~~~~h~av~v~i~~~~~~lLL~~R~~~k~~~pg~W~~p~gG~ve~gEs~~~~~~~~~~~eaa~REl~EEtGl~~~ 81 (192)
.+| +++++|++|+++|+|++|+|||+||+..+..+||.|++|+||++++||+ +++||+||+.|||||++.
T Consensus 25 ~~~~~~~~~h~av~v~i~~~~g~vLL~rR~~~~~~~PG~w~~~~gG~ve~GEt---------~~~aa~REl~EEtGl~~~ 95 (184)
T PRK03759 25 AAHTADTPLHLAFSCYLFDADGRLLVTRRALSKKTWPGVWTNSCCGHPQPGES---------LEDAVIRRCREELGVEIT 95 (184)
T ss_pred HHHhcCCCeeeEEEEEEEcCCCeEEEEEccCCCCCCCCcccccccCCCCCCCC---------HHHHHHHHHHHHhCCCcc
Confidence 456 4789999999999999999999999988888999999999999999999 899999999999999886
Q ss_pred CCCCCceeeeeEEEEEccCCCCcceeEEEEEEEEeeCCccCCCccccccEEEecHHHHHHHHHhhcCCCCCcccChhHHH
Q 029516 82 DVPVDEFTPLGRILYKAPSDGKWGEHELDYLLFIVRDVSVNPNPDEVAEYKYVNREQLKELLRKADAGEEGLKLSPWFRL 161 (192)
Q Consensus 82 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~Ev~~~~Wv~~~el~~~~~~~~~~~~~~~~~p~~~~ 161 (192)
.+. ..++.+.|......+...++++++|.+.....+.++++|+.+++|++++++.+++.++ +..++||++.
T Consensus 96 ~~~----~~~~~~~~~~~~~~~~~~~~~~~vf~~~~~~~~~~~~~Ev~~~~W~~~~el~~~i~~~-----~~~~~~~l~~ 166 (184)
T PRK03759 96 DLE----LVLPDFRYRATDPNGIVENEVCPVFAARVTSALQPNPDEVMDYQWVDPADLLRAVDAT-----PWAFSPWMVL 166 (184)
T ss_pred ccc----cccceEEEEEecCCCceeeEEEEEEEEEECCCCCCChhHeeeEEEECHHHHHHHHHhC-----CcccChHHHH
Confidence 432 1233444432222232335667778776655667778899999999999999999986 5689999988
Q ss_pred HHHHH
Q 029516 162 VVDNF 166 (192)
Q Consensus 162 ~~~~~ 166 (192)
++..+
T Consensus 167 ~~~~~ 171 (184)
T PRK03759 167 QAANL 171 (184)
T ss_pred HHHHh
Confidence 77654
No 6
>TIGR02150 IPP_isom_1 isopentenyl-diphosphate delta-isomerase, type 1. This model represents type 1 of two non-homologous families of the enzyme isopentenyl-diphosphate delta-isomerase (IPP isomerase). IPP is an essential building block for many compounds, including enzyme cofactors, sterols, and prenyl groups. This inzyme interconverts isopentenyl diphosphate and dimethylallyl diphosphate.
Probab=99.95 E-value=3.2e-27 Score=185.34 Aligned_cols=139 Identities=53% Similarity=0.851 Sum_probs=112.9
Q ss_pred ccc-cCCcceEEEEEEEEeCCceEEEeeecCCCCCCCCCccccccccCCCCCChhhhhhhhcHHHHHHHHHHHHhCCCCC
Q 029516 3 KIE-SLNLLHRAFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAE 81 (192)
Q Consensus 3 ~~~-~~~~~h~av~v~i~~~~~~lLL~~R~~~k~~~pg~W~~p~gG~ve~gEs~~~~~~~~~~~eaa~REl~EEtGl~~~ 81 (192)
.+| +.|++|++|+++|+|++|+|||+||+.++..+||.|++|+||+++.||+ +||+||++|||||++.
T Consensus 18 ~~~~~~g~~h~~v~v~v~~~~g~vLl~kR~~~k~~~PG~W~~~~gG~v~~GE~-----------eaa~REl~EE~Gl~~~ 86 (158)
T TIGR02150 18 EVHLQETPLHRAFSVFLFNEEGQLLLQRRALSKITWPGVWTNSCCSHPLPGEL-----------EAAIRRLREELGIPAD 86 (158)
T ss_pred HhhhcCCCeEEEEEEEEEcCCCeEEEEeccCCCcCCCCCccccccCCCCcccH-----------HHHHHHHHHHHCCCcc
Confidence 456 4699999999999999999999999999989999999999999999996 8999999999999987
Q ss_pred CCCCCceeeeeEEEEEccCCCCcceeEEEEEEEEeeCCccCCCccccccEEEecHHHHHHHHHhhcCCCCCcccChhHHH
Q 029516 82 DVPVDEFTPLGRILYKAPSDGKWGEHELDYLLFIVRDVSVNPNPDEVAEYKYVNREQLKELLRKADAGEEGLKLSPWFRL 161 (192)
Q Consensus 82 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~Ev~~~~Wv~~~el~~~~~~~~~~~~~~~~~p~~~~ 161 (192)
... +..++.+.|......+ .+.++++|.+..+..+.++++|+++++|++++++.+++... ++.++||++.
T Consensus 87 ~~~---l~~~~~~~~~~~~~~g--~~~~~~~f~~~~~~~~~~~~~Ev~~~~W~~~~el~~~~~~~-----~~~~~p~~~~ 156 (158)
T TIGR02150 87 DVP---LTVLPRFSYRARDAWG--EHELCPVFFARAPVPLNPNPEEVAEYRWVSLEELKEILKAP-----WAGFSPWFRI 156 (158)
T ss_pred ccc---eEEcceEEEEEecCCC--cEEEEEEEEEecCCcccCChhHeeeEEEeCHHHHHHHHhcC-----ccccCHhhHH
Confidence 432 3344544454332222 25667778776655567777899999999999999999875 5789999986
Q ss_pred H
Q 029516 162 V 162 (192)
Q Consensus 162 ~ 162 (192)
+
T Consensus 157 ~ 157 (158)
T TIGR02150 157 Q 157 (158)
T ss_pred h
Confidence 5
No 7
>cd03676 Nudix_hydrolase_3 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belong to this superfamily requires a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate spe
Probab=99.95 E-value=1.4e-26 Score=184.92 Aligned_cols=149 Identities=17% Similarity=0.273 Sum_probs=119.6
Q ss_pred ccccCCcceEEEEEE--EEeCC--ceEEEeeecCCCCCCCCCccccccccCCCCCChhhhhhhhcHHHHHHHHHHHHhCC
Q 029516 3 KIESLNLLHRAFSVF--LFNSK--YELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGI 78 (192)
Q Consensus 3 ~~~~~~~~h~av~v~--i~~~~--~~lLL~~R~~~k~~~pg~W~~p~gG~ve~gEs~~~~~~~~~~~eaa~REl~EEtGl 78 (192)
.+|.+|++|++|.++ +.|++ ++||++||+..|..+||+|+..+|||+++||+ +.+||+||++|||||
T Consensus 24 ~~~~~g~~h~~v~~~~~~~~~~~~~~l~lqrRs~~K~~~Pg~wd~~~~G~v~~gE~---------~~~aA~REl~EE~Gl 94 (180)
T cd03676 24 ASRLFGLVTYGVHLNGYVRDEDGGLRIWIPRRSPTKATWPGMLDNLVAGGLGHGEG---------PEETLVKECDEEAGL 94 (180)
T ss_pred ccccCCceEEEEEEEEEEEcCCCCeEEEEEeccCCCCCCCCceeeecccCCCCCCC---------HHHHHHHHHHHHhCC
Confidence 467899999999965 55765 89999999999999999998777999999999 899999999999999
Q ss_pred CCCCCCCCceeeeeEEEEEccCCCCcceeEEEEEEEEeeC--CccCCCccccccEEEecHHHHHHHHHhhcCCCCCcccC
Q 029516 79 CAEDVPVDEFTPLGRILYKAPSDGKWGEHELDYLLFIVRD--VSVNPNPDEVAEYKYVNREQLKELLRKADAGEEGLKLS 156 (192)
Q Consensus 79 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~--~~~~~~~~Ev~~~~Wv~~~el~~~~~~~~~~~~~~~~~ 156 (192)
++..+. .+.+++.+.|.....+....++++|+|.+..+ ..+.++++|+.++.|++++|+.+++..+ .|+
T Consensus 95 ~~~~~~--~l~~~g~~~~~~~~~~~~~~~e~~~~f~~~~~~~~~~~~~~~Ev~~~~~~~~~el~~~l~~g-------~~~ 165 (180)
T cd03676 95 PEDLVR--QLKPVGVVSYLREGEAGGLQPEVEYVYDLELPPDFIPAPQDGEVESFRLLTIDEVLRALKEG-------EFK 165 (180)
T ss_pred CHHHHh--hceeccEEEEEEEcCCCcEeeeEEEEEEEEcCCCCeeCCCCCcEeEEEEECHHHHHHHHHcC-------CCC
Confidence 876432 24556666665431222234677888876543 2456788899999999999999999874 799
Q ss_pred hhHHHHHHHHHHH
Q 029516 157 PWFRLVVDNFLFK 169 (192)
Q Consensus 157 p~~~~~~~~~l~~ 169 (192)
|+...+.-+|+.+
T Consensus 166 ~~~~lv~~~~~~~ 178 (180)
T cd03676 166 PNCALVTLDFLIR 178 (180)
T ss_pred cccHhHHHHHHhh
Confidence 9999999988753
No 8
>cd04692 Nudix_Hydrolase_33 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.94 E-value=3.8e-26 Score=175.99 Aligned_cols=135 Identities=25% Similarity=0.363 Sum_probs=106.3
Q ss_pred ceEEEEEEEEeCC---ceEEEeeecCCCCCCCCCccccccccCCCCCChhhhhhhhcHHHHHHHHHHHHhCCCCCCCCCC
Q 029516 10 LHRAFSVFLFNSK---YELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVD 86 (192)
Q Consensus 10 ~h~av~v~i~~~~---~~lLL~~R~~~k~~~pg~W~~p~gG~ve~gEs~~~~~~~~~~~eaa~REl~EEtGl~~~~~~~~ 86 (192)
+|++|+|+|+|.+ +++|+++|+..+..+||.|++|+||++++||| +.+||+||++|||||.+.. .
T Consensus 1 ~h~~v~~~v~~~~~~~~~vLl~~R~~~~~~~pg~W~~~~gG~ve~gEt---------~~~aa~REl~EEtGl~~~~---~ 68 (144)
T cd04692 1 WHRTFHCWIITKDEGKGYVLLQKRSANKKTYPGLWDISSAGHILAGET---------PLEDGIRELEEELGLDVSA---D 68 (144)
T ss_pred CceEEEEEEEEccCCCCEEEEEecCCCCCCCCCccccccCcccCCCCC---------HHHHHHHHHHHHhCCCCCh---H
Confidence 6999999999988 89999999998888999999977999999999 8999999999999998752 2
Q ss_pred ceeeeeEEEEEccCCCCcceeEEEEEEEEeeC---CccCCCccccccEEEecHHHHHHHHHhhcCCCCCcccChhHHH
Q 029516 87 EFTPLGRILYKAPSDGKWGEHELDYLLFIVRD---VSVNPNPDEVAEYKYVNREQLKELLRKADAGEEGLKLSPWFRL 161 (192)
Q Consensus 87 ~l~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~---~~~~~~~~Ev~~~~Wv~~~el~~~~~~~~~~~~~~~~~p~~~~ 161 (192)
++.+++.+.+.....+....+.+.++|++... ..+.++++|+.+++|++++++.+++..+ +..|+||+..
T Consensus 69 ~l~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~E~~~~~W~~~~el~~~~~~~-----~~~~~~~~~~ 141 (144)
T cd04692 69 DLIPLGTFKIEYDHIGKLIDREFHHVYLYELKVPLEEFTLQKEEVAGVVLIPLDEFAELLEEE-----DHKYQYYDGE 141 (144)
T ss_pred HeEEeeEEEEeccccCCCccceEEEEEEEeccCChhhcCCChhHhheEEEECHHHHHHHHHcC-----CCCCCccccc
Confidence 45666766554431222122445566666542 3455677899999999999999999875 6789998753
No 9
>PLN02791 Nudix hydrolase homolog
Probab=99.92 E-value=4.8e-24 Score=200.70 Aligned_cols=140 Identities=28% Similarity=0.387 Sum_probs=115.8
Q ss_pred ccccCCcceEEEEEEEEeC-CceEEEeeecCCCCCCCCCccccccccCCCCCChhhhhhhhcHHHHHHHHHHHHhCCCCC
Q 029516 3 KIESLNLLHRAFSVFLFNS-KYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAE 81 (192)
Q Consensus 3 ~~~~~~~~h~av~v~i~~~-~~~lLL~~R~~~k~~~pg~W~~p~gG~ve~gEs~~~~~~~~~~~eaa~REl~EEtGl~~~ 81 (192)
++|+.|.+|++|+|+|+|. +++||||||+..|.+|||.|++++|||++.||+ +.+||+||+.||+||.+.
T Consensus 24 evH~~Gl~HrAvhVwIfn~~~gelLLQkRS~~K~~~PG~WDiS~gGHv~aGEs---------~~eAA~REL~EELGI~l~ 94 (770)
T PLN02791 24 EVHRDGDYHRAVHVWIYSESTQELLLQRRADCKDSWPGQWDISSAGHISAGDT---------SLLSAQRELEEELGIILP 94 (770)
T ss_pred hhccCCCceEEEEEEEEECCCCeEEEEEecCCCCCCCCcccCcCCCCCCCCCC---------HHHHHHHHHHHHhCCCCC
Confidence 5899999999999999996 689999999999999999999998999999999 799999999999999863
Q ss_pred CCCCCceeeeeEEEEEcc-CCCCcceeEEEEEEEEeeC-----CccCCCccccccEEEecHHHHHHHHHhhcCCCCCccc
Q 029516 82 DVPVDEFTPLGRILYKAP-SDGKWGEHELDYLLFIVRD-----VSVNPNPDEVAEYKYVNREQLKELLRKADAGEEGLKL 155 (192)
Q Consensus 82 ~~~~~~l~~~~~~~~~~~-~~~~~~~~~~~~~f~~~~~-----~~~~~~~~Ev~~~~Wv~~~el~~~~~~~~~~~~~~~~ 155 (192)
.+.+.+++.+.+... ..+.+.+++++++|++... ..+.++++||++++|++++|+.+++... +..|
T Consensus 95 ---~~~l~~l~~~~~~~~~~~g~~~e~E~~~VYlv~~~~~~p~~~~~lq~eEV~~v~wvsl~El~~~l~~~-----~~~f 166 (770)
T PLN02791 95 ---KDAFELLFVFLQECVINDGKFINNEYNDVYLVTTLDPIPLEAFTLQESEVSAVKYMSIEEYKSALAKE-----DPAY 166 (770)
T ss_pred ---hhheeeeeeEEEEeeccCCCcceeeEEEEEEEEECCCCCcccCCCChhhhheeEEEcHHHHHHHHhcC-----CCce
Confidence 334566666544322 2344567889988887531 1456789999999999999999999864 4678
Q ss_pred ChhH
Q 029516 156 SPWF 159 (192)
Q Consensus 156 ~p~~ 159 (192)
+||-
T Consensus 167 vP~~ 170 (770)
T PLN02791 167 VPYD 170 (770)
T ss_pred eecc
Confidence 8873
No 10
>cd04697 Nudix_Hydrolase_38 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.91 E-value=1.3e-23 Score=158.38 Aligned_cols=116 Identities=28% Similarity=0.349 Sum_probs=93.7
Q ss_pred EEEEEEEEeCCceEEEeeecCCCCCCCCCccccccccCCCCCChhhhhhhhcHHHHHHHHHHHHhCCCCCCCCCCceeee
Q 029516 12 RAFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPL 91 (192)
Q Consensus 12 ~av~v~i~~~~~~lLL~~R~~~k~~~pg~W~~p~gG~ve~gEs~~~~~~~~~~~eaa~REl~EEtGl~~~~~~~~~l~~~ 91 (192)
++++++++|++|+|||++|+.++..+||+|++|+||++++||+ +.+||+||+.||||+++.. +..+
T Consensus 1 ~~~~v~i~~~~~~iLl~~R~~~~~~~~g~w~~~~GG~ve~gE~---------~~~aa~REl~EEtGl~~~~-----l~~~ 66 (126)
T cd04697 1 RATYIFVFNSEGKLCVHKRTLTKDWCPGYWDIAFGGVVQAGES---------YLQNAQRELEEELGIDGVQ-----LTPL 66 (126)
T ss_pred CeEEEEEEcCCCeEEEEECCCCCCCCCCcccCcCCcccCCCCC---------HHHHHHHHHHHHHCCCccc-----cEEe
Confidence 5789999999999999999988877899999976999999999 8999999999999998763 3556
Q ss_pred eEEEEEccCCCCcceeEEEEEEEEeeCCccCCCccccccEEEecHHHHHHHHHhh
Q 029516 92 GRILYKAPSDGKWGEHELDYLLFIVRDVSVNPNPDEVAEYKYVNREQLKELLRKA 146 (192)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~Ev~~~~Wv~~~el~~~~~~~ 146 (192)
+.+.+.... .....++|.+.....+.++++|+.+++|++++++.+++..+
T Consensus 67 ~~~~~~~~~-----~~~~~~~f~~~~~~~~~~~~~E~~~~~w~~~~el~~~~~~~ 116 (126)
T cd04697 67 GLFYYDTDG-----NRVWGKVFSCVYDGPLKLQEEEVEEITWLSINEILQFKEGE 116 (126)
T ss_pred eEEEecCCC-----ceEEEEEEEEEECCCCCCCHhHhhheEEcCHHHHHHHhhcC
Confidence 665553221 12334566665555566778899999999999999998875
No 11
>PRK15393 NUDIX hydrolase YfcD; Provisional
Probab=99.91 E-value=3.3e-23 Score=165.96 Aligned_cols=138 Identities=20% Similarity=0.251 Sum_probs=106.9
Q ss_pred ccccCCcceEEEEEEEEeCCceEEEeeecCCCCCCCCCccccccccCCCCCChhhhhhhhcHHHHHHHHHHHHhCCCCCC
Q 029516 3 KIESLNLLHRAFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAED 82 (192)
Q Consensus 3 ~~~~~~~~h~av~v~i~~~~~~lLL~~R~~~k~~~pg~W~~p~gG~ve~gEs~~~~~~~~~~~eaa~REl~EEtGl~~~~ 82 (192)
.+|++++.|+++.++|+|++|+|||++|+..+..+||.|+.++||++++||| +.+||+|||.||||+.+..
T Consensus 29 ~~~~~~~~h~~~~v~v~~~~g~iLL~~R~~~~~~~pg~~~~~pGG~ve~GEs---------~~eAA~REL~EEtGl~~~~ 99 (180)
T PRK15393 29 QMRAQCLRHRATYIVVHDGMGKILVQRRTETKDFLPGMLDATAGGVVQAGEQ---------LLESARREAEEELGIAGVP 99 (180)
T ss_pred HHhhCCCceEEEEEEEECCCCeEEEEEeCCCCCCCCCcccccCCCcCCCCCC---------HHHHHHHHHHHHHCCCCcc
Confidence 4577899999999999999999999999988777899998655999999999 8999999999999998653
Q ss_pred CCCCceeeeeEEEEEccCCCCcceeEEEEEEEEeeCCccCCCccccccEEEecHHHHHHHHHhhcCCCCCcccChhHHHH
Q 029516 83 VPVDEFTPLGRILYKAPSDGKWGEHELDYLLFIVRDVSVNPNPDEVAEYKYVNREQLKELLRKADAGEEGLKLSPWFRLV 162 (192)
Q Consensus 83 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~Ev~~~~Wv~~~el~~~~~~~~~~~~~~~~~p~~~~~ 162 (192)
+..++.+.|.... . +...++|.+.......++++|+.+++|++++++.++.. .|+|.....
T Consensus 100 -----~~~~~~~~~~~~~----~-~~~~~~f~~~~~~~~~~~~~E~~~~~W~~~~el~~~~~---------~~~~~~~~~ 160 (180)
T PRK15393 100 -----FAEHGQFYFEDEN----C-RVWGALFSCVSHGPFALQEEEVSEVCWMTPEEITARCD---------EFTPDSLKA 160 (180)
T ss_pred -----ceeceeEEecCCC----c-eEEEEEEEEEeCCCCCCChHHeeEEEECCHHHHhhhhh---------hcCccHHHH
Confidence 2345555443221 1 22334555544556667888999999999999998863 477777777
Q ss_pred HHHHHH
Q 029516 163 VDNFLF 168 (192)
Q Consensus 163 ~~~~l~ 168 (192)
+..++.
T Consensus 161 l~~~l~ 166 (180)
T PRK15393 161 LALWLT 166 (180)
T ss_pred HHHHHH
Confidence 777744
No 12
>cd04693 Nudix_Hydrolase_34 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.91 E-value=2.6e-23 Score=156.41 Aligned_cols=123 Identities=31% Similarity=0.481 Sum_probs=94.3
Q ss_pred EEEEEEEEeCCceEEEeeecCCCCCCCCCccccccccCCCCCChhhhhhhhcHHHHHHHHHHHHhCCCCCCCCCCceeee
Q 029516 12 RAFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPL 91 (192)
Q Consensus 12 ~av~v~i~~~~~~lLL~~R~~~k~~~pg~W~~p~gG~ve~gEs~~~~~~~~~~~eaa~REl~EEtGl~~~~~~~~~l~~~ 91 (192)
++|.+++++++|+|||+||+..+..+||.|++|+||++++||+ + +||+||++||||+.+... .+..+
T Consensus 1 ~~v~v~~~~~~g~vLl~~R~~~~~~~pg~w~~p~GG~ve~gE~---------~-~aa~REl~EEtGl~~~~~---~~~~~ 67 (127)
T cd04693 1 LVVHVCIFNSKGELLLQKRSPNKDGWPGMWDLSVGGHVQAGET---------S-TAAEREVKEELGLELDFS---ELRPL 67 (127)
T ss_pred CeEEEEEEeCCCeEEEEEccCCCCCCCCcccccCCCcCCCCCC---------H-HHHHHHHHHHhCCCcChh---hcEEE
Confidence 3678889999999999999988878999999998999999999 9 999999999999997632 33455
Q ss_pred eEEEEEccCCCCcceeEEEEEEEEee-CCccCCCccccccEEEecHHHHHHHHHhhcCCCCCcccChhHH
Q 029516 92 GRILYKAPSDGKWGEHELDYLLFIVR-DVSVNPNPDEVAEYKYVNREQLKELLRKADAGEEGLKLSPWFR 160 (192)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~~f~~~~-~~~~~~~~~Ev~~~~Wv~~~el~~~~~~~~~~~~~~~~~p~~~ 160 (192)
+.+.+..+ + +...++|.+.. .....++++|+.+++|++++++.+++.++ .++||+.
T Consensus 68 ~~~~~~~~---~---~~~~~~~~~~~~~~~~~~~~~E~~~~~w~~~~el~~~~~~~-------~~~~~~~ 124 (127)
T cd04693 68 FRYFFEAE---G---FDDYYLFYADVEIGKLILQKEEVDEVKFVSKDEIDGLIGHG-------EFTPYFE 124 (127)
T ss_pred EEEEeecC---C---eEEEEEEEecCcccccccCHHHhhhEEEeCHHHHHHHHhcC-------Ccccccc
Confidence 55444321 1 22233444332 34556677899999999999999999875 5676654
No 13
>PRK15472 nucleoside triphosphatase NudI; Provisional
Probab=99.88 E-value=1.2e-21 Score=150.05 Aligned_cols=122 Identities=22% Similarity=0.259 Sum_probs=80.0
Q ss_pred ceEEEEEEEEeCCceEEEeeecCCCCCCCCCccccccccCCCCCChhhhhhhhcHHHHHHHHHHHHhCCCCCCCCCCcee
Q 029516 10 LHRAFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFT 89 (192)
Q Consensus 10 ~h~av~v~i~~~~~~lLL~~R~~~k~~~pg~W~~p~gG~ve~gEs~~~~~~~~~~~eaa~REl~EEtGl~~~~~~~~~l~ 89 (192)
.++++++.+++.+|++||+||+.++..+||.|++| ||++++||| +.+||+||+.|||||++.......+.
T Consensus 2 ~~r~~~~~ii~~~~~vLl~~R~~~~~~~~g~W~lP-gG~ve~gEs---------~~~aa~REl~EEtGl~~~~~~~~~~~ 71 (141)
T PRK15472 2 RQRTIVCPLIQNDGAYLLCKMADDRGVFPGQWALS-GGGVEPGER---------IEEALRREIREELGEQLLLTEITPWT 71 (141)
T ss_pred cceeEEEEEEecCCEEEEEEecccCCCCCCceeCC-cccCCCCCC---------HHHHHHHHHHHHHCCceeeeeecccc
Confidence 45778888887889999999988777899999999 999999999 89999999999999986421111011
Q ss_pred eeeEEEEEccCCCCcceeEEEE-EEEEee-CCccCCCccccccEEEecHHHHHHH
Q 029516 90 PLGRILYKAPSDGKWGEHELDY-LLFIVR-DVSVNPNPDEVAEYKYVNREQLKEL 142 (192)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~-~f~~~~-~~~~~~~~~Ev~~~~Wv~~~el~~~ 142 (192)
+.+.+.+....++........+ +|.+.. ...+.+ .+|+.+++|+++++|.++
T Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~E~~~~~w~~~~el~~l 125 (141)
T PRK15472 72 FRDDIRTKTYADGRKEEIYMIYLIFDCVSANRDVKI-NEEFQDYAWVKPEDLVHY 125 (141)
T ss_pred ccccceeEEecCCCceeEEEEEEEEEeecCCCcccC-ChhhheEEEccHHHhccc
Confidence 1111111111111111111112 222322 233344 379999999999999875
No 14
>PRK09438 nudB dihydroneopterin triphosphate pyrophosphatase; Provisional
Probab=99.85 E-value=1.6e-20 Score=144.90 Aligned_cols=130 Identities=15% Similarity=0.153 Sum_probs=90.4
Q ss_pred ceEEEEEEEEeCCceEEEeeecCCCCCCCCCccccccccCCCCCChhhhhhhhcHHHHHHHHHHHHhCCCCCCCCCCcee
Q 029516 10 LHRAFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFT 89 (192)
Q Consensus 10 ~h~av~v~i~~~~~~lLL~~R~~~k~~~pg~W~~p~gG~ve~gEs~~~~~~~~~~~eaa~REl~EEtGl~~~~~~~~~l~ 89 (192)
.+.+|.++++|.+|++||+||+. .||.|++| ||++++||| +.+||+||+.||||+.+..- .+.
T Consensus 6 ~~~~v~~vi~~~~~~vLl~~r~~----~~~~W~lP-gG~ve~gEs---------~~~aa~REl~EEtGl~~~~~---~~~ 68 (148)
T PRK09438 6 RPVSVLVVIYTPDLGVLMLQRAD----DPDFWQSV-TGSLEEGET---------PAQTAIREVKEETGIDVLAE---QLT 68 (148)
T ss_pred CceEEEEEEEeCCCeEEEEEecC----CCCcEeCC-cccCCCCCC---------HHHHHHHHHHHHhCcCcccc---cee
Confidence 45678889999999999998863 26899999 999999999 89999999999999988311 111
Q ss_pred eee---EEEEEc------cCCCCcceeEEEEEEEEeeCCccCCCccccccEEEecHHHHHHHHHhhcCCCCCcccChhHH
Q 029516 90 PLG---RILYKA------PSDGKWGEHELDYLLFIVRDVSVNPNPDEVAEYKYVNREQLKELLRKADAGEEGLKLSPWFR 160 (192)
Q Consensus 90 ~~~---~~~~~~------~~~~~~~~~~~~~~f~~~~~~~~~~~~~Ev~~~~Wv~~~el~~~~~~~~~~~~~~~~~p~~~ 160 (192)
.++ ...|.. ....+. .+..+++|.+.......+..+|+.+++|++++++.++. +.|..+
T Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~f~~~~~~~~~~~~~E~~~~~W~~~~e~~~~~-----------~~~~~~ 136 (148)
T PRK09438 69 LIDCQRSIEYEIFPHWRHRYAPGV-TRNTEHWFCLALPHERPVVLTEHLAYQWLDAREAAALT-----------KSWSNA 136 (148)
T ss_pred ecccccccccccchhhhhcccccc-CCceeEEEEEecCCCCccccCcccceeeCCHHHHHHHh-----------cChhHH
Confidence 111 011110 011121 24556777776543334445699999999999999873 567777
Q ss_pred HHHHHHHH
Q 029516 161 LVVDNFLF 168 (192)
Q Consensus 161 ~~~~~~l~ 168 (192)
.++..++.
T Consensus 137 ~~l~~~~~ 144 (148)
T PRK09438 137 EAIEQLVI 144 (148)
T ss_pred HHHHHHHH
Confidence 77776654
No 15
>PF00293 NUDIX: NUDIX domain; InterPro: IPR000086 The generic name 'NUDIX hydrolases' (NUcleoside DIphosphate linked to some other moiety X) has been coined for this domain family []. The family can be divided into a number of subgroups, of which MutT anti- mutagenic activity represents only one type; most of the rest hydrolyse diverse nucleoside diphosphate derivatives (including ADP-ribose, GDP- mannose, TDP-glucose, NADH, UDP-sugars, dNTP and NTP).; GO: 0016787 hydrolase activity; PDB: 3FJY_A 3MGM_A 2XSQ_A 3COU_A 2O5F_A 1Q27_A 3F6A_A 3E57_B 3SON_B 2GT4_C ....
Probab=99.85 E-value=3.5e-20 Score=138.56 Aligned_cols=120 Identities=30% Similarity=0.443 Sum_probs=91.1
Q ss_pred ceEEEEEEEEeCCceEEEeeecCCCCCCCCCccccccccCCCCCChhhhhhhhcHHHHHHHHHHHHhCCCCCCCCCCcee
Q 029516 10 LHRAFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFT 89 (192)
Q Consensus 10 ~h~av~v~i~~~~~~lLL~~R~~~k~~~pg~W~~p~gG~ve~gEs~~~~~~~~~~~eaa~REl~EEtGl~~~~~~~~~l~ 89 (192)
+|++|+++|+++++++||+||+......++.|.+| ||+++.||| +.+||+||+.||||+.+.. ..
T Consensus 1 ~~~~v~~ii~~~~~~vLl~~r~~~~~~~~~~~~~p-gG~i~~~E~---------~~~aa~REl~EE~g~~~~~-----~~ 65 (134)
T PF00293_consen 1 WRRAVGVIIFNEDGKVLLIKRSRSPITFPGYWELP-GGGIEPGES---------PEEAARRELKEETGLDVSP-----LE 65 (134)
T ss_dssp EEEEEEEEEEETTTEEEEEEESTTSSSSTTEEESS-EEEECTTSH---------HHHHHHHHHHHHHSEEEEE-----EE
T ss_pred CCCEEEEEEEeCCcEEEEEEecCCCCCCCCeEecc-eeeEEcCCc---------hhhhHHhhhhhcccceecc-----cc
Confidence 58999999999999999999988765678999999 999999999 8999999999999999742 23
Q ss_pred eeeEEEEEccCCCCcceeEEEEEEEEe--eC-CccCCCccccccEEEecHHHHHHHHHhh
Q 029516 90 PLGRILYKAPSDGKWGEHELDYLLFIV--RD-VSVNPNPDEVAEYKYVNREQLKELLRKA 146 (192)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~f~~~--~~-~~~~~~~~Ev~~~~Wv~~~el~~~~~~~ 146 (192)
..+...+........ ....++|.+. .. ....++.+|+.+++|++++++.++....
T Consensus 66 ~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~e~~~~~W~~~~el~~~~~~~ 123 (134)
T PF00293_consen 66 LLGLFSYPSPSGDPE--GEIVIFFIAELPSEQSEIQPQDEEISEVKWVPPDELLELLLNG 123 (134)
T ss_dssp EEEEEEEEETTTESS--EEEEEEEEEEEEEEESECHTTTTTEEEEEEEEHHHHHHHHHTT
T ss_pred cceeeeecccCCCcc--cEEEEEEEEEEeCCccccCCCCccEEEEEEEEHHHhhhchhCc
Confidence 455555555443321 2233333332 22 2445555699999999999999988753
No 16
>PRK15434 GDP-mannose mannosyl hydrolase NudD; Provisional
Probab=99.84 E-value=8.4e-20 Score=143.80 Aligned_cols=118 Identities=16% Similarity=0.162 Sum_probs=84.4
Q ss_pred ceEEEEEEEEeCCceEEEeeecCCCCCCCCCccccccccCCCCCChhhhhhhhcHHHHHHHHHHHHhCCCCCCCCCCcee
Q 029516 10 LHRAFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFT 89 (192)
Q Consensus 10 ~h~av~v~i~~~~~~lLL~~R~~~k~~~pg~W~~p~gG~ve~gEs~~~~~~~~~~~eaa~REl~EEtGl~~~~~~~~~l~ 89 (192)
.+.+|.++|++.+|+|||+||+.. ..+|.|++| ||++++||| +++||+||++||||+.+... . ..
T Consensus 16 ~~~~v~~vI~~~~g~VLL~kR~~~--~~~g~W~lP-GG~VE~GEt---------~~~Aa~REl~EEtGl~v~~~-~--~~ 80 (159)
T PRK15434 16 PLISLDFIVENSRGEFLLGKRTNR--PAQGYWFVP-GGRVQKDET---------LEAAFERLTMAELGLRLPIT-A--GQ 80 (159)
T ss_pred ceEEEEEEEECCCCEEEEEEccCC--CCCCcEECC-ceecCCCCC---------HHHHHHHHHHHHHCCccccc-c--ce
Confidence 356888999988899999999743 368999999 999999999 89999999999999986421 1 12
Q ss_pred eeeEEE--EEcc-CCCCcceeEEEEEEEEee-CCccCCCccccccEEEecHHHHHHH
Q 029516 90 PLGRIL--YKAP-SDGKWGEHELDYLLFIVR-DVSVNPNPDEVAEYKYVNREQLKEL 142 (192)
Q Consensus 90 ~~~~~~--~~~~-~~~~~~~~~~~~~f~~~~-~~~~~~~~~Ev~~~~Wv~~~el~~~ 142 (192)
+++... |... +...+..|.++.+|.+.. .+.+.++++|+.+++|++++++...
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~i~~~f~~~~~~g~~~~~~~E~~~~~W~~~~el~~~ 137 (159)
T PRK15434 81 FYGVWQHFYDDNFSGTDFTTHYVVLGFRLRVAEEDLLLPDEQHDDYRWLTPDALLAS 137 (159)
T ss_pred EEEEEEeecccccCCCccceEEEEEEEEEEecCCcccCChHHeeEEEEEeHHHhhhc
Confidence 333222 2211 111222244555666654 3455666779999999999999865
No 17
>cd04682 Nudix_Hydrolase_23 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.83 E-value=4.6e-20 Score=137.92 Aligned_cols=111 Identities=18% Similarity=0.224 Sum_probs=81.5
Q ss_pred eEEEEEEEEeCCceEEEeeecCC-CCCCCCCccccccccCCCCCChhhhhhhhcHHHHHHHHHHHHhCCCCCCCCCCcee
Q 029516 11 HRAFSVFLFNSKYELLLQQRSGT-KVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFT 89 (192)
Q Consensus 11 h~av~v~i~~~~~~lLL~~R~~~-k~~~pg~W~~p~gG~ve~gEs~~~~~~~~~~~eaa~REl~EEtGl~~~~~~~~~l~ 89 (192)
|.++++++.++ |++||++|+.. +..+||.|++| ||+++.||+ +.+||+||+.||||+++.... +.
T Consensus 1 ~~v~~~~~~~~-g~vLl~~r~~~~~~~~~g~w~~P-gG~ve~gE~---------~~~aa~RE~~EE~Gl~~~~~~---~~ 66 (122)
T cd04682 1 SGVALALLIGD-GRLLLQLRDDKPGIPYPGHWDLP-GGHREGGET---------PLECVLRELLEEIGLTLPESR---IP 66 (122)
T ss_pred CceEEEEEEcC-CEEEEEEccCCCCCCCCCcEeCC-CccccCCCC---------HHHHHHHHHHHHhCCcccccc---cc
Confidence 45666666665 99999999876 66799999999 999999999 899999999999999986321 12
Q ss_pred eeeEEEEEccCCCCcceeEEEEEEEEeeC-C-ccCCCccccccEEEecHHHHHHH
Q 029516 90 PLGRILYKAPSDGKWGEHELDYLLFIVRD-V-SVNPNPDEVAEYKYVNREQLKEL 142 (192)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~f~~~~~-~-~~~~~~~Ev~~~~Wv~~~el~~~ 142 (192)
... .|.... .....++|.+... . ....+++|+.+++|++++++.+.
T Consensus 67 ~~~--~~~~~~-----~~~~~~~f~~~~~~~~~~~~~~~E~~~~~W~~~~el~~~ 114 (122)
T cd04682 67 WFR--VYPSAS-----PPGTEHVFVVPLTAREDAILFGDEGQALRLMTVEEFLAH 114 (122)
T ss_pred eeE--ecccCC-----CCceEEEEEEEEecCCCccccCchhheeecccHHHHhhc
Confidence 222 222211 1334566666542 2 24567789999999999999765
No 18
>cd04681 Nudix_Hydrolase_22 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.83 E-value=8.3e-20 Score=137.37 Aligned_cols=127 Identities=22% Similarity=0.226 Sum_probs=88.6
Q ss_pred EEEEEEEEeCCceEEEeeecCCCCCCCCCccccccccCCCCCChhhhhhhhcHHHHHHHHHHHHhCCCCCCCCCCceeee
Q 029516 12 RAFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPL 91 (192)
Q Consensus 12 ~av~v~i~~~~~~lLL~~R~~~k~~~pg~W~~p~gG~ve~gEs~~~~~~~~~~~eaa~REl~EEtGl~~~~~~~~~l~~~ 91 (192)
.+|.++|++++|++||++|+... ++|.|++| ||+++.||| +.+||.||++||||+++..+ ..+
T Consensus 2 ~av~~~i~~~~~~vLL~~r~~~~--~~~~w~~P-gG~ve~gEs---------~~~aa~RE~~EEtGl~~~~~-----~~~ 64 (130)
T cd04681 2 AAVGVLILNEDGELLVVRRAREP--GKGTLDLP-GGFVDPGES---------AEEALIREIREETGLKVTEL-----SYL 64 (130)
T ss_pred ceEEEEEEcCCCcEEEEEecCCC--CCCcEeCC-ceeecCCCC---------HHHHHHHHHHHHhCCcccce-----eEE
Confidence 47888999999999999997543 58999999 999999999 89999999999999988632 344
Q ss_pred eEEEEEccCCCCcceeEEEEEEEEeeC-CccCCCccccccEEEecHHHHHHHHHhhcCCCCCcccChhHHHHHHHH
Q 029516 92 GRILYKAPSDGKWGEHELDYLLFIVRD-VSVNPNPDEVAEYKYVNREQLKELLRKADAGEEGLKLSPWFRLVVDNF 166 (192)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~~f~~~~~-~~~~~~~~Ev~~~~Wv~~~el~~~~~~~~~~~~~~~~~p~~~~~~~~~ 166 (192)
+.+....+.. +...+.+.++|.+... .....+++|+.+++|+++++|.. . ....|..+..+++|
T Consensus 65 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~W~~~~el~~---~-------~~~~~~~~~~~~~~ 129 (130)
T cd04681 65 FSLPNTYPYG-GMEYDTLDLFFVCQVDDKPIVKAPDDVAELKWVVPQDIEL---E-------NFAFPSIRQAVERW 129 (130)
T ss_pred EeecceeeeC-CceeEEEEEEEEEEeCCCCCcCChHHhheeEEecHHHCCc---c-------cCCcHHHHHHHHhh
Confidence 4432222221 2222344445555543 23455668999999999999852 1 12335566666665
No 19
>cd04694 Nudix_Hydrolase_35 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.83 E-value=1.9e-19 Score=139.34 Aligned_cols=124 Identities=23% Similarity=0.385 Sum_probs=89.2
Q ss_pred EEEEEEEEeCCceEEEeeecCCCCCCCCCccccccccCCCCCChhhhhhhhcHHHHHHHHHHHHhCCCCCCCCCCceeee
Q 029516 12 RAFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPL 91 (192)
Q Consensus 12 ~av~v~i~~~~~~lLL~~R~~~k~~~pg~W~~p~gG~ve~gEs~~~~~~~~~~~eaa~REl~EEtGl~~~~~~~~~l~~~ 91 (192)
.+|+++++|.++++||+||+..+..+||.|++| |||+++||+ +.+||+||+.||+|+.+..... .+.++
T Consensus 2 ~~v~viv~~~~~~vLl~rr~~~~~~~~g~w~~P-gG~v~~~E~---------~~~aa~RE~~EE~gi~~~~~~~-~~~~l 70 (143)
T cd04694 2 VGVAVLLQSSDQKLLLTRRASSLRIFPNVWVPP-GGHVELGEN---------LLEAGLRELNEETGLTLDPIDK-SWQVL 70 (143)
T ss_pred cEEEEEEEcCCCEEEEEEECCCCCCCCCeEECc-ccccCCCCC---------HHHHHHHHHHHHHCCCcccccc-ceeEE
Confidence 468888899999999999998776799999999 999999999 8999999999999998764311 12344
Q ss_pred eEEEEEcc--CCCCc--ceeEEEEEEEEeeC------CccCCCccccccEEEecHHHHHHHHHhh
Q 029516 92 GRILYKAP--SDGKW--GEHELDYLLFIVRD------VSVNPNPDEVAEYKYVNREQLKELLRKA 146 (192)
Q Consensus 92 ~~~~~~~~--~~~~~--~~~~~~~~f~~~~~------~~~~~~~~Ev~~~~Wv~~~el~~~~~~~ 146 (192)
+...+..+ ...+. ..+...|++..... ..+.++++|+++++|++++++.+++...
T Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~Ev~~~~Wv~~~~a~~~~~~~ 135 (143)
T cd04694 71 GLWESVYPPLLSRGLPKRHHIVVYILVKSSETHQQLQARLQPDPNEVSAAAWLDKSLAKAVVSAE 135 (143)
T ss_pred eeeccccccccCCCcccceeEEEEEEEEeccccccccccccCChhhccceEeeCHHHHHHHHHhh
Confidence 44322211 11111 22344444443321 1345677999999999999999998753
No 20
>cd04679 Nudix_Hydrolase_20 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.83 E-value=1.5e-19 Score=135.43 Aligned_cols=114 Identities=16% Similarity=0.155 Sum_probs=83.8
Q ss_pred eEEEEEEEEeCCceEEEeeecCCCCCCCCCccccccccCCCCCChhhhhhhhcHHHHHHHHHHHHhCCCCCCCCCCceee
Q 029516 11 HRAFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTP 90 (192)
Q Consensus 11 h~av~v~i~~~~~~lLL~~R~~~k~~~pg~W~~p~gG~ve~gEs~~~~~~~~~~~eaa~REl~EEtGl~~~~~~~~~l~~ 90 (192)
+.+|+++|++.+|++||++|+... .+|.|++| ||++++||+ +.+||+||++||||+.+... .+
T Consensus 2 ~~~~~~~i~~~~~~vLL~~r~~~~--~~~~w~lP-gG~ve~gEt---------~~eaa~RE~~EEtGl~~~~~-----~~ 64 (125)
T cd04679 2 RVGCGAAILRDDGKLLLVKRLRAP--EAGHWGIP-GGKVDWMEA---------VEDAVVREIEEETGLSIHST-----RL 64 (125)
T ss_pred ceEEEEEEECCCCEEEEEEecCCC--CCCeEeCC-eeeccCCCC---------HHHHHHHHHHHHHCCCcccc-----eE
Confidence 568899999998999999987532 47999999 999999999 89999999999999998643 33
Q ss_pred eeEEEEEccCCCCcceeEEEEEEEEee-CCcc-CCCccccccEEEecHHHHHHHHH
Q 029516 91 LGRILYKAPSDGKWGEHELDYLLFIVR-DVSV-NPNPDEVAEYKYVNREQLKELLR 144 (192)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~f~~~~-~~~~-~~~~~Ev~~~~Wv~~~el~~~~~ 144 (192)
++.+.+..... ..+.+..+|.+.. +... ..+++|+.+++|++++++.+.+.
T Consensus 65 ~~~~~~~~~~~---~~~~~~~~f~~~~~~~~~~~~~~~E~~~~~W~~~~~l~~~l~ 117 (125)
T cd04679 65 LCVVDHIIEEP---PQHWVAPVYLAENFSGEPRLMEPDKLLELGWFALDALPQPLT 117 (125)
T ss_pred EEEEeecccCC---CCeEEEEEEEEeecCCccccCCCccccEEEEeCHHHCCchhH
Confidence 44443322211 1244555666543 3323 34567999999999999987543
No 21
>cd04696 Nudix_Hydrolase_37 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.83 E-value=2e-19 Score=134.90 Aligned_cols=111 Identities=16% Similarity=0.246 Sum_probs=77.6
Q ss_pred EEEEEEEEeCCceEEEeeecCCCCCCCCCccccccccCCCCCChhhhhhhhcHHHHHHHHHHHHhCCCCCCCCCCceeee
Q 029516 12 RAFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPL 91 (192)
Q Consensus 12 ~av~v~i~~~~~~lLL~~R~~~k~~~pg~W~~p~gG~ve~gEs~~~~~~~~~~~eaa~REl~EEtGl~~~~~~~~~l~~~ 91 (192)
.+++++|+|++|++||+||.. ++|.|++| ||++++||| +.+||+||++||||+++..+. ++
T Consensus 3 ~~v~~~i~~~~~~iLL~r~~~----~~~~w~lP-GG~ve~gEs---------~~~aa~REl~EEtGl~~~~~~-----~~ 63 (125)
T cd04696 3 VTVGALIYAPDGRILLVRTTK----WRGLWGVP-GGKVEWGET---------LEEALKREFREETGLKLRDIK-----FA 63 (125)
T ss_pred cEEEEEEECCCCCEEEEEccC----CCCcEeCC-ceeccCCCC---------HHHHHHHHHHHHhCCcccccc-----eE
Confidence 467888999889999998752 57999999 999999999 899999999999999886432 22
Q ss_pred eEEEEEccCCCCcceeEEEEEEEEeeCC-ccCCCccccccEEEecHHHHHHH
Q 029516 92 GRILYKAPSDGKWGEHELDYLLFIVRDV-SVNPNPDEVAEYKYVNREQLKEL 142 (192)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~~f~~~~~~-~~~~~~~Ev~~~~Wv~~~el~~~ 142 (192)
+...+.......-..+.+.+.|.+.... .+.. .+|+.+++|++++++.++
T Consensus 64 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~e~~~~~W~~~~el~~~ 114 (125)
T cd04696 64 MVQEAIFSEEFHKPAHFVLFDFFARTDGTEVTP-NEEIVEWEWVTPEEALDY 114 (125)
T ss_pred EEEEEeccCCCCCccEEEEEEEEEEecCCcccC-CcccceeEEECHHHHhcC
Confidence 2222221111000124444455555433 3333 468999999999999865
No 22
>cd03426 CoAse Coenzyme A pyrophosphatase (CoAse), a member of the Nudix hydrolase superfamily, functions to catalyze the elimination of oxidized inactive CoA, which can inhibit CoA-utilizing enzymes. The need of CoAses mainly arises under conditions of oxidative stress. CoAse has a conserved Nudix fold and requires a single divalent cation for catalysis. In addition to a signature Nudix motif G[X5]E[X7]REUXEEXGU, where U is Ile, Leu, or Val, CoAse contains an additional motif upstream called the NuCoA motif (LLTXT(SA)X3RX3GX3FPGG) which is postulated to be involved in CoA recognition. CoA plays a central role in lipid metabolism. It is involved in the initial steps of fatty acid sythesis in the cytosol, in the oxidation of fatty acids and the citric acid cycle in the mitochondria, and in the oxidation of long-chain fatty acids in peroxisomes. CoA has the important role of activating fatty acids for further modification into key biological signalling molecules.
Probab=99.82 E-value=9.6e-20 Score=142.61 Aligned_cols=113 Identities=21% Similarity=0.141 Sum_probs=84.2
Q ss_pred ceEEEEEEEEeCC--ceEEEeeecCCCCCCCCCccccccccCCCC-CChhhhhhhhcHHHHHHHHHHHHhCCCCCCCCCC
Q 029516 10 LHRAFSVFLFNSK--YELLLQQRSGTKVTFPLVWTNTCCSHPLYR-ESELIEENALGVRNAAQRKLLDELGICAEDVPVD 86 (192)
Q Consensus 10 ~h~av~v~i~~~~--~~lLL~~R~~~k~~~pg~W~~p~gG~ve~g-Es~~~~~~~~~~~eaa~REl~EEtGl~~~~~~~~ 86 (192)
+|.||.+++++.+ ++|||+||+..+..+||.|++| ||++++| || +.+||+||++||||+++..
T Consensus 1 ~~~av~v~l~~~~~~~~vLL~~R~~~~~~~~g~w~lP-GG~ve~gdEs---------~~eaa~REl~EEtGl~~~~---- 66 (157)
T cd03426 1 RRAAVLVLLVEREGELRVLLTKRASHLRSHPGQVAFP-GGKVDPGDED---------PVATALREAEEEIGLPPDS---- 66 (157)
T ss_pred CceEEEEEEEeCCCceEEEEEEcccccccCCCcEECC-CCCcCCCcCC---------HHHHHHHHHHHHhCCCccc----
Confidence 3678888888866 5899999998877789999999 9999999 99 8999999999999999864
Q ss_pred ceeeeeEEEEEccCCCCcceeEEEEEEEEee--CCccCCCccccccEEEecHHHHHHH
Q 029516 87 EFTPLGRILYKAPSDGKWGEHELDYLLFIVR--DVSVNPNPDEVAEYKYVNREQLKEL 142 (192)
Q Consensus 87 ~l~~~~~~~~~~~~~~~~~~~~~~~~f~~~~--~~~~~~~~~Ev~~~~Wv~~~el~~~ 142 (192)
+..++.+...... . ...+++|++.. ...+.++++|+.+++|++++++.+.
T Consensus 67 -~~~l~~~~~~~~~-~----~~~v~~~~~~~~~~~~~~~~~~E~~~~~W~~~~el~~~ 118 (157)
T cd03426 67 -VEVLGRLPPYYTR-S----GFVVTPVVGLVPPPLPLVLNPDEVAEVFEVPLSFLLDP 118 (157)
T ss_pred -eEEEEECCCcccc-C----CCEEEEEEEEECCCCCCCCCHHHhheeEEEcHHHHhCc
Confidence 2344433211111 1 11233444433 2356678889999999999999875
No 23
>cd03673 Ap6A_hydrolase Diadenosine hexaphosphate (Ap6A) hydrolase is a member of the Nudix hydrolase superfamily. Ap6A hydrolase specifically hydrolyzes diadenosine polyphosphates, but not ATP or diadenosine triphosphate, and it generates ATP as the product. Ap6A, the most preferred substrate, hydrolyzes to produce two ATP molecules, which is a novel hydrolysis mode for Ap6A. These results indicate that Ap6A hydrolase is a diadenosine polyphosphate hydrolase. It requires the presence of a divalent cation, such as Mn2+, Mg2+, Zn2+, and Co2+, for activity. Members of the Nudix superfamily are recognized by a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which forms a structural motif that functions as a metal binding and catalytic site.
Probab=99.82 E-value=4.5e-19 Score=132.72 Aligned_cols=123 Identities=26% Similarity=0.281 Sum_probs=88.6
Q ss_pred EEEEEEEEeCC---ceEEEeeecCCCCCCCCCccccccccCCCCCChhhhhhhhcHHHHHHHHHHHHhCCCCCCCCCCce
Q 029516 12 RAFSVFLFNSK---YELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEF 88 (192)
Q Consensus 12 ~av~v~i~~~~---~~lLL~~R~~~k~~~pg~W~~p~gG~ve~gEs~~~~~~~~~~~eaa~REl~EEtGl~~~~~~~~~l 88 (192)
.++++++++.+ ++|||++|... +.|++| ||++++||| +.+||+||++||||+++..+
T Consensus 2 ~~a~~ii~~~~~~~~~vLl~~~~~~-----~~w~~P-gG~v~~gEs---------~~~aa~REl~EEtGl~~~~~----- 61 (131)
T cd03673 2 LAAGGVVFRGSDGGIEVLLIHRPRG-----DDWSLP-KGKLEPGET---------PPEAAVREVEEETGIRAEVG----- 61 (131)
T ss_pred eeEEEEEEEccCCCeEEEEEEcCCC-----CcccCC-CCccCCCCC---------HHHHHHHHHhhhhCCceEec-----
Confidence 46677787765 79999998643 799999 999999999 89999999999999987643
Q ss_pred eeeeEEEEEccCCCCcceeEEEEEEEEee-CCccCC-CccccccEEEecHHHHHHHHHhhcCCCCCcccChhHHHHHHHH
Q 029516 89 TPLGRILYKAPSDGKWGEHELDYLLFIVR-DVSVNP-NPDEVAEYKYVNREQLKELLRKADAGEEGLKLSPWFRLVVDNF 166 (192)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~f~~~~-~~~~~~-~~~Ev~~~~Wv~~~el~~~~~~~~~~~~~~~~~p~~~~~~~~~ 166 (192)
..++.+.|..+..+... +..+++|.+.. .....+ +++|+.+++|++++++.+++. .|..+.++..+
T Consensus 62 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~E~~~~~W~~~~el~~~~~-----------~~~~~~~l~~~ 129 (131)
T cd03673 62 DPLGTIRYWFSSSGKRV-HKTVHWWLMRALGGEFTPQPDEEVDEVRWLPPDEARDRLS-----------YPNDRELLRAA 129 (131)
T ss_pred ceEEEEEEeccCCCCCc-ceEEEEEEEEEcCCCcccCCCCcEEEEEEcCHHHHHHHcC-----------CHhHHHHHHHh
Confidence 34666666554332222 44455565544 333333 568999999999999987642 45556666555
No 24
>cd03430 GDPMH GDP-mannose glycosyl hydrolase (AKA GDP-mannose mannosyl hydrolase (GDPMH)) is a member of the Nudix hydrolase superfamily. This class of enzymes is unique from other members of the superfamily in two aspects. First, it contains a modified Nudix signature sequence. The slight changes to the conserved sequence motif, GX5EX7REUXEEXGU, where U = I, L or V), are believed to contribute to the removal of all magnesium binding sites but one, retaining only the metal site that coordinates the pyrophosphate of the substrate. Secondly, it is not a pyrophosphatase that substitutes at a phosphorus; instead, it hydrolyzes nucleotide sugars such as GDP-mannose to GDP and mannose, cleaving the phosphoglycosyl bond by substituting at a carbon position. GDP-mannose provides mannosyl components for cell wall synthesis and is required for the synthesis of other glycosyl donors (such as GDP-fucose and colitose) for the cell wall. The importance of GDP-sugar hydrolase activities is thus close
Probab=99.82 E-value=2.8e-19 Score=138.19 Aligned_cols=117 Identities=15% Similarity=0.130 Sum_probs=83.7
Q ss_pred eEEEEEEEEeCCceEEEeeecCCCCCCCCCccccccccCCCCCChhhhhhhhcHHHHHHHHHHHHhCCCCCCCCCCceee
Q 029516 11 HRAFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTP 90 (192)
Q Consensus 11 h~av~v~i~~~~~~lLL~~R~~~k~~~pg~W~~p~gG~ve~gEs~~~~~~~~~~~eaa~REl~EEtGl~~~~~~~~~l~~ 90 (192)
..+|+++|+|.+|+|||+||... .++|.|.+| ||++++||| +.+||+||++||||+++... .+.+
T Consensus 12 ~v~v~~vI~~~~g~vLl~~R~~~--p~~g~w~lP-GG~ve~gEs---------~~~aa~RE~~EE~Gl~v~~~---~~~~ 76 (144)
T cd03430 12 LVSIDLIVENEDGQYLLGKRTNR--PAQGYWFVP-GGRIRKNET---------LTEAFERIAKDELGLEFLIS---DAEL 76 (144)
T ss_pred eEEEEEEEEeCCCeEEEEEccCC--CCCCcEECC-CceecCCCC---------HHHHHHHHHHHHHCCCcccc---cceE
Confidence 45788999999999999999753 368999999 999999999 89999999999999987632 1233
Q ss_pred eeEEEEEccC---CCCcceeEEEEEEEEee-CCccCCCccccccEEEecHHHHHHH
Q 029516 91 LGRILYKAPS---DGKWGEHELDYLLFIVR-DVSVNPNPDEVAEYKYVNREQLKEL 142 (192)
Q Consensus 91 ~~~~~~~~~~---~~~~~~~~~~~~f~~~~-~~~~~~~~~Ev~~~~Wv~~~el~~~ 142 (192)
++.+.+.... ..+...|.+..+|.+.. ...+...++|+.+++|++++++.++
T Consensus 77 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~W~~~~el~~~ 132 (144)
T cd03430 77 LGVFEHFYDDNFFGDDFSTHYVVLGYVLKLSSNELLLPDEQHSEYQWLTSDELLAD 132 (144)
T ss_pred EEEEEEEeccccccCCCccEEEEEEEEEEEcCCcccCCchhccEeEEecHHHHhcC
Confidence 4443221111 11112244444555543 3344566789999999999999864
No 25
>cd04684 Nudix_Hydrolase_25 Contains a crystal structure of the Nudix hydrolase from Enterococcus faecalis, which has an unknown function. In general, members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity. They also contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which forms a structural motif that functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability
Probab=99.82 E-value=3.8e-19 Score=132.63 Aligned_cols=112 Identities=18% Similarity=0.121 Sum_probs=81.3
Q ss_pred EEEEEEEeCCceEEEeeecCCCCCCCCCccccccccCCCCCChhhhhhhhcHHHHHHHHHHHHhCCCCCCCCCCceeeee
Q 029516 13 AFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPLG 92 (192)
Q Consensus 13 av~v~i~~~~~~lLL~~R~~~k~~~pg~W~~p~gG~ve~gEs~~~~~~~~~~~eaa~REl~EEtGl~~~~~~~~~l~~~~ 92 (192)
++.++|+++ +++||++|+... ++|.|.+| ||+++.||+ +.+||+||++||||+++... .+++
T Consensus 2 ~~~~ii~~~-~~vLl~~~~~~~--~~~~w~lP-gG~ve~gE~---------~~~aa~RE~~EEtGl~~~~~-----~~~~ 63 (128)
T cd04684 2 GAYAVIPRD-GKLLLIQKNGGP--YEGRWDLP-GGGIEPGES---------PEEALHREVLEETGLTVEIG-----RRLG 63 (128)
T ss_pred eeEEEEEeC-CEEEEEEccCCC--CCCeEECC-CcccCCCCC---------HHHHHHHHHHHHhCcEeecc-----eeee
Confidence 567777876 899999987654 68999999 999999999 89999999999999987642 3455
Q ss_pred EEEEEccCCCC-cceeEEEEEEEEeeCCcc---CCCccccccEEEecHHHHHHH
Q 029516 93 RILYKAPSDGK-WGEHELDYLLFIVRDVSV---NPNPDEVAEYKYVNREQLKEL 142 (192)
Q Consensus 93 ~~~~~~~~~~~-~~~~~~~~~f~~~~~~~~---~~~~~Ev~~~~Wv~~~el~~~ 142 (192)
.+.+..+.... ...+.+.++|.+...... ..+.+|+.+++|++++++...
T Consensus 64 ~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~e~~~~~W~~~~~l~~~ 117 (128)
T cd04684 64 SASRYFYSPDGDYDAHHLCVFYDARVVGGALPVQEPGEDSHGAAWLPLDEAIER 117 (128)
T ss_pred EEEEEEECCCCCeeccEEEEEEEEEEecCccccCCCCCCceeeEEECHHHhhcc
Confidence 44332222111 112556677777653322 445678899999999999864
No 26
>cd03424 ADPRase_NUDT5 ADP-ribose pyrophosphatase (ADPRase) catalyzes the hydrolysis of ADP-ribose and a variety of additional ADP-sugar conjugates to AMP and ribose-5-phosphate. Like other members of the Nudix hydrolase superfamily, it requires a divalent cation, such as Mg2+, for its activity. It also contains a highly conserved 23-residue Nudix motif (GX5EX7REUXEEXGU, where U = I, L or V) which functions as a metal binding site/catalytic site. In addition to the Nudix motif, there are additional conserved amino acid residues, distal from the signature sequence, that correlate with substrate specificity. In humans, there are four distinct ADPRase activities, three putative cytosolic enzymes (ADPRase-I, -II, and -Mn) and a single mitochondrial enzyme (ADPRase-m). Human ADPRase-II is also referred to as NUDT5. It lacks the N-terminal target sequence unique to mitochondrial ADPRase. The different cytosolic types are distinguished by their specificities for substrate and specific requirem
Probab=99.81 E-value=7.3e-19 Score=133.49 Aligned_cols=116 Identities=19% Similarity=0.121 Sum_probs=87.5
Q ss_pred ceEEEEEEEEeCCceEEEeeecCCCCCCCCCccccccccCCCCCChhhhhhhhcHHHHHHHHHHHHhCCCCCCCCCCcee
Q 029516 10 LHRAFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFT 89 (192)
Q Consensus 10 ~h~av~v~i~~~~~~lLL~~R~~~k~~~pg~W~~p~gG~ve~gEs~~~~~~~~~~~eaa~REl~EEtGl~~~~~~~~~l~ 89 (192)
.|++|.++++++++++||++|.... ..++.|++| ||+++.||+ +.+||+||++||||+.+.. +.
T Consensus 1 ~~~~v~v~~~~~~~~iLl~~~~~~~-~~~~~w~~P-gG~ve~gEs---------~~~aa~RE~~EE~Gl~~~~-----~~ 64 (137)
T cd03424 1 HPDAVAVLPYDDDGKVVLVRQYRPP-VGGWLLELP-AGLIDPGED---------PEEAARRELEEETGYEAGD-----LE 64 (137)
T ss_pred CCCEEEEEEEcCCCeEEEEEeeecC-CCCEEEEeC-CccCCCCCC---------HHHHHHHHHHHHHCCCccc-----eE
Confidence 3688999999999999998765433 357899999 999999999 8999999999999999863 34
Q ss_pred eeeEEEEEccCCCCcceeEEEEEEEEeeCCc---cCCCccccccEEEecHHHHHHHHHhh
Q 029516 90 PLGRILYKAPSDGKWGEHELDYLLFIVRDVS---VNPNPDEVAEYKYVNREQLKELLRKA 146 (192)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~---~~~~~~Ev~~~~Wv~~~el~~~~~~~ 146 (192)
.++.+.+. . +.. +..+++|++..... ...+++|+.+++|++++++.+++..+
T Consensus 65 ~~~~~~~~--~--~~~-~~~~~~~~~~~~~~~~~~~~~~~E~~~~~w~~~~el~~~~~~~ 119 (137)
T cd03424 65 KLGSFYPS--P--GFS-DERIHLFLAEDLSPGEEGLLDEGEDIEVVLVPLDEALELLADG 119 (137)
T ss_pred EEeeEecC--C--ccc-CccEEEEEEEcccccccCCCCCCCeeEEEEecHHHHHHHHHcC
Confidence 45554332 1 111 23445666554322 45677899999999999999999875
No 27
>cd03674 Nudix_Hydrolase_1 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity. They also contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, U=I, L or V), which forms a structural motif that functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamil
Probab=99.81 E-value=8.9e-19 Score=134.03 Aligned_cols=131 Identities=24% Similarity=0.239 Sum_probs=87.8
Q ss_pred ceEEEEEEEEeCC-ceEEEeeecCCCCCCCCCccccccccCCCCCChhhhhhhhcHHHHHHHHHHHHhCCCCCCCCCCce
Q 029516 10 LHRAFSVFLFNSK-YELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEF 88 (192)
Q Consensus 10 ~h~av~v~i~~~~-~~lLL~~R~~~k~~~pg~W~~p~gG~ve~gEs~~~~~~~~~~~eaa~REl~EEtGl~~~~~~~~~l 88 (192)
.|.+++++++|.+ ++|||+||+. .|.|.+| ||++++||+ +.+||+||++||||+.+..+....+
T Consensus 1 ~~~~~~~~v~~~~~~~vLLv~r~~-----~~~w~lP-gG~ve~gE~---------~~~aa~REl~EEtGl~~~~~~~~~~ 65 (138)
T cd03674 1 GHFTASAFVVNPDRGKVLLTHHRK-----LGSWLQP-GGHIDPDES---------LLEAALRELREETGIELLGLRPLSV 65 (138)
T ss_pred CcEEEEEEEEeCCCCeEEEEEEcC-----CCcEECC-ceecCCCCC---------HHHHHHHHHHHHHCCCcccceeccc
Confidence 4889999999987 8999998864 3789999 999999999 8999999999999998764321100
Q ss_pred eeeeEEEEEccCCCC---cceeEEEEEEEEee-CCccC-CCccccccEEEecHHHHHHHHHhhcCCCCCcccChhHHHHH
Q 029516 89 TPLGRILYKAPSDGK---WGEHELDYLLFIVR-DVSVN-PNPDEVAEYKYVNREQLKELLRKADAGEEGLKLSPWFRLVV 163 (192)
Q Consensus 89 ~~~~~~~~~~~~~~~---~~~~~~~~~f~~~~-~~~~~-~~~~Ev~~~~Wv~~~el~~~~~~~~~~~~~~~~~p~~~~~~ 163 (192)
. .....+....... ...+.+..+|.+.. ..... ++++|+.+++|++++++..+ .+.+..+.++
T Consensus 66 ~-~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~E~~~~~W~~~~el~~~-----------~~~~~~~~~i 133 (138)
T cd03674 66 L-VDLDVHPIDGHPKRGVPGHLHLDLRFLAVAPADDVAPPKSDESDAVRWFPLDELASL-----------ELPEDVRRLV 133 (138)
T ss_pred c-ccceeEeecCCCCCCCCCcEEEEEEEEEEccCccccCCCCCcccccEEEcHHHhhhc-----------cCCHHHHHHH
Confidence 0 0001111111110 01122334555543 33333 36689999999999999764 4567777777
Q ss_pred HHHH
Q 029516 164 DNFL 167 (192)
Q Consensus 164 ~~~l 167 (192)
++.|
T Consensus 134 ~~~~ 137 (138)
T cd03674 134 EKAL 137 (138)
T ss_pred HHHh
Confidence 7654
No 28
>cd04664 Nudix_Hydrolase_7 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate s
Probab=99.81 E-value=5.8e-19 Score=132.87 Aligned_cols=112 Identities=22% Similarity=0.206 Sum_probs=82.6
Q ss_pred EEEEEEEEeC--CceEEEeeecCCCCCCCCCccccccccCCCCCChhhhhhhhcHHHHHHHHHHHHhCCCCCCCCCCcee
Q 029516 12 RAFSVFLFNS--KYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFT 89 (192)
Q Consensus 12 ~av~v~i~~~--~~~lLL~~R~~~k~~~pg~W~~p~gG~ve~gEs~~~~~~~~~~~eaa~REl~EEtGl~~~~~~~~~l~ 89 (192)
|.|++++++. ++++||+||+.. ++|.|++| ||+++.||| +.+||+||++||||+.+..+ .
T Consensus 2 ~~~~v~~~~~~~~~~vLL~~r~~~---~~~~w~~P-gG~ve~~Es---------~~~aa~RE~~EE~Gl~~~~~-----~ 63 (129)
T cd04664 2 RSVLVVPYRLTGEGRVLLLRRSDK---YAGFWQSV-TGGIEDGES---------PAEAARREVAEETGLDPERL-----T 63 (129)
T ss_pred cEEEEEEEEeCCCCEEEEEEeCCC---CCCccccc-CcccCCCCC---------HHHHHHHHHHHHHCCChhhe-----E
Confidence 5788999988 899999999865 78999999 999999999 89999999999999987532 2
Q ss_pred eeeEEE----EEccCCCCcceeEEEEEEEEeeCCc-cCCCccccccEEEecHHHHHHHHH
Q 029516 90 PLGRIL----YKAPSDGKWGEHELDYLLFIVRDVS-VNPNPDEVAEYKYVNREQLKELLR 144 (192)
Q Consensus 90 ~~~~~~----~~~~~~~~~~~~~~~~~f~~~~~~~-~~~~~~Ev~~~~Wv~~~el~~~~~ 144 (192)
.++... +... ..+ .+...++|.+..... ....++|+.+++|++++++.+++.
T Consensus 64 ~~~~~~~~~~~~~~-~~~--~~~~~~~f~~~~~~~~~~~~~~E~~~~~W~~~~e~~~~~~ 120 (129)
T cd04664 64 LLDRGASIAFVEFT-DNG--RVWTEHPFAFHLPSDAVVTLDWEHDAFEWVPPEEAAALLL 120 (129)
T ss_pred EEeecccccccccC-CCc--eEEEEeEEEEEcCCCCcccCCccccccEecCHHHHHHHHc
Confidence 232221 1111 111 244556676654332 234557999999999999998764
No 29
>cd04700 DR1025_like DR1025 from Deinococcus radiodurans, a member of the Nudix hydrolase superfamily, show nucleoside triphosphatase and dinucleoside polyphosphate pyrophosphatase activities. Like other enzymes belonging to this superfamily, it requires a divalent cation, in this case Mg2+, for its activity. It also contains a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. In general, substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is us
Probab=99.81 E-value=9.2e-19 Score=134.83 Aligned_cols=119 Identities=22% Similarity=0.266 Sum_probs=87.4
Q ss_pred CCcceEEEEEEEEeCCceEEEeeecCCCCCCCCCccccccccCCCCCChhhhhhhhcHHHHHHHHHHHHhCCCCCCCCCC
Q 029516 7 LNLLHRAFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVD 86 (192)
Q Consensus 7 ~~~~h~av~v~i~~~~~~lLL~~R~~~k~~~pg~W~~p~gG~ve~gEs~~~~~~~~~~~eaa~REl~EEtGl~~~~~~~~ 86 (192)
.-+.-++|+++|+|.++++||++|... ..+|.|++| ||++++||| +.+||+||++||||+++...
T Consensus 9 ~~~~~~av~~vv~~~~~~vLL~~r~~~--~~~~~w~lP-gG~ve~gEt---------~~~aa~REl~EEtGl~~~~~--- 73 (142)
T cd04700 9 VEVEARAAGAVILNERNDVLLVQEKGG--PKKGLWHIP-SGAVEDGEF---------PQDAAVREACEETGLRVRPV--- 73 (142)
T ss_pred cceeeeeEEEEEEeCCCcEEEEEEcCC--CCCCeEECC-ceecCCCCC---------HHHHHHHHHHHhhCceeecc---
Confidence 345678899999998899999887543 257999999 999999999 89999999999999998642
Q ss_pred ceeeeeEEEEEccCCCCcceeEEEEEEEEee-CCccC-CCccccccEEEecHHHHHHHHHhh
Q 029516 87 EFTPLGRILYKAPSDGKWGEHELDYLLFIVR-DVSVN-PNPDEVAEYKYVNREQLKELLRKA 146 (192)
Q Consensus 87 ~l~~~~~~~~~~~~~~~~~~~~~~~~f~~~~-~~~~~-~~~~Ev~~~~Wv~~~el~~~~~~~ 146 (192)
.+++.+.+..+. + .....++|.+.. +.... ...+|+.+++|++++++.+++..+
T Consensus 74 --~~~~~~~~~~~~--~--~~~~~~~f~~~~~~~~~~~~~~~E~~~~~w~~~~el~~~~~~g 129 (142)
T cd04700 74 --KFLGTYLGRFDD--G--VLVLRHVWLAEPEGQTLAPKFTDEIAEASFFSREDVAQLYAQG 129 (142)
T ss_pred --EEEEEEEEEcCC--C--cEEEEEEEEEEecCCccccCCCCCEEEEEEECHHHhhhccccc
Confidence 345554433322 1 133445666654 22222 224799999999999999998764
No 30
>cd04683 Nudix_Hydrolase_24 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.80 E-value=7.3e-19 Score=130.48 Aligned_cols=114 Identities=22% Similarity=0.287 Sum_probs=80.8
Q ss_pred EEEEEEEeCCceEEEeeecCCCCCCCCCccccccccCCCCCChhhhhhhhcHHHHHHHHHHHHhCCCCCCCCCCceeeee
Q 029516 13 AFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPLG 92 (192)
Q Consensus 13 av~v~i~~~~~~lLL~~R~~~k~~~pg~W~~p~gG~ve~gEs~~~~~~~~~~~eaa~REl~EEtGl~~~~~~~~~l~~~~ 92 (192)
+|.++|++ +|+|||+||.... ..+|.|++| ||++++||| +.+||+||++||||+.+.. ..+.+++
T Consensus 2 ~v~~vi~~-~~~vLL~~r~~~~-~~~~~w~lP-gG~ve~gE~---------~~~aa~REl~EEtGl~v~~---~~~~~~~ 66 (120)
T cd04683 2 AVYVLLRR-DDEVLLQRRANTG-YMDGQWALP-AGHLEKGED---------AVTAAVREAREEIGVTLDP---EDLRLAH 66 (120)
T ss_pred cEEEEEEE-CCEEEEEEccCCC-CCCCeEeCC-ccccCCCCC---------HHHHHHHHHHHHHCCccCh---hheEEEE
Confidence 56777766 5899999987654 358999999 999999999 8999999999999998752 2345566
Q ss_pred EEEEEccCCCCcceeEEEEEEEEee-CCcc-CCCccccccEEEecHHHHHHHHHh
Q 029516 93 RILYKAPSDGKWGEHELDYLLFIVR-DVSV-NPNPDEVAEYKYVNREQLKELLRK 145 (192)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~f~~~~-~~~~-~~~~~Ev~~~~Wv~~~el~~~~~~ 145 (192)
.+.+.... ..+.+.++|.+.. .+.+ ..+++|+.+++|+++++|...+..
T Consensus 67 ~~~~~~~~----~~~~~~~~f~~~~~~~~~~~~~~~e~~~~~W~~~~~l~~~~~~ 117 (120)
T cd04683 67 TMHRRTED----IESRIGLFFTVRRWSGEPRNCEPDKCAELRWFPLDALPDDTVD 117 (120)
T ss_pred EEEecCCC----CceEEEEEEEEEeecCccccCCCCcEeeEEEEchHHCcchhcc
Confidence 55443221 1234444454433 3333 345678999999999999876543
No 31
>cd03427 MTH1 MutT homolog-1 (MTH1) is a member of the Nudix hydrolase superfamily. MTH1, the mammalian counterpart of MutT, hydrolyzes oxidized purine nucleoside triphosphates, such as 8-oxo-dGTP and 2-hydroxy-ATP, to monophosphates, thereby preventing the incorporation of such oxygen radicals during replication. This is an important step in the repair mechanism in genomic and mitochondrial DNA. Like other members of the Nudix family, it requires a divalent cation, such as Mg2+ or Mn2+, for activity, and contain the Nudix motif, a highly conserved 23-residue block (GX5EX7REUXEEXGU, where U = I, L or V), that functions as a metal binding and catalytic site. MTH1 is predominantly localized in the cytoplasm and mitochondria. Structurally, this enzyme adopts a similar fold to MutT despite low sequence similarity outside the conserved nudix motif. The most distinctive structural difference between MutT and MTH1 is the presence of a beta-hairpin, which is absent in MutT. This results in a m
Probab=99.80 E-value=9.1e-19 Score=132.83 Aligned_cols=123 Identities=17% Similarity=0.158 Sum_probs=87.5
Q ss_pred EEEEEEEEeCCceEEEeeecCCCCCCCCCccccccccCCCCCChhhhhhhhcHHHHHHHHHHHHhCCCCCCCCCCceeee
Q 029516 12 RAFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPL 91 (192)
Q Consensus 12 ~av~v~i~~~~~~lLL~~R~~~k~~~pg~W~~p~gG~ve~gEs~~~~~~~~~~~eaa~REl~EEtGl~~~~~~~~~l~~~ 91 (192)
+++.++|.+. +++||++|+... ++|.|.+| ||+++.||| +.+||+||+.||||+.+... ..+
T Consensus 2 ~~~~~~i~~~-~~vLL~~r~~~~--~~~~w~~P-gG~ve~gEs---------~~~aa~RE~~EEtGl~~~~~-----~~~ 63 (137)
T cd03427 2 LTTLCFIKDP-DKVLLLNRKKGP--GWGGWNGP-GGKVEPGET---------PEECAIRELKEETGLTIDNL-----KLV 63 (137)
T ss_pred eEEEEEEEEC-CEEEEEEecCCC--CCCeEeCC-ceeCCCCCC---------HHHHHHHHHHHhhCeEeecc-----eEE
Confidence 4566777765 899999998664 68999999 999999999 89999999999999988643 445
Q ss_pred eEEEEEccCCCCcceeEEEEEEEEeeC-CccCCCccccccEEEecHHHHHHHHHhhcCCCCCcccChhHHHHHHHHH
Q 029516 92 GRILYKAPSDGKWGEHELDYLLFIVRD-VSVNPNPDEVAEYKYVNREQLKELLRKADAGEEGLKLSPWFRLVVDNFL 167 (192)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~~f~~~~~-~~~~~~~~Ev~~~~Wv~~~el~~~~~~~~~~~~~~~~~p~~~~~~~~~l 167 (192)
+.+.+..+.. ..+...++|.+... .... .++|..+++|++++++..+ .+.+....++..|+
T Consensus 64 ~~~~~~~~~~---~~~~~~~~f~~~~~~~~~~-~~~e~~~~~W~~~~el~~~-----------~~~~~~~~~l~~~~ 125 (137)
T cd03427 64 GIIKFPFPGE---EERYGVFVFLATEFEGEPL-KESEEGILDWFDIDDLPLL-----------PMWPGDREWLPLML 125 (137)
T ss_pred EEEEEEcCCC---CcEEEEEEEEECCcccccC-CCCccccceEEcHhhcccc-----------cCCCCcHHHHHHHh
Confidence 6665554321 12455666766542 2222 3456678999999999764 24454555555554
No 32
>cd04678 Nudix_Hydrolase_19 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.80 E-value=9.9e-19 Score=131.48 Aligned_cols=112 Identities=22% Similarity=0.326 Sum_probs=81.8
Q ss_pred eEEEEEEEEeCCceEEEeeecCCCCCCCCCccccccccCCCCCChhhhhhhhcHHHHHHHHHHHHhCCCCCCCCCCceee
Q 029516 11 HRAFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTP 90 (192)
Q Consensus 11 h~av~v~i~~~~~~lLL~~R~~~k~~~pg~W~~p~gG~ve~gEs~~~~~~~~~~~eaa~REl~EEtGl~~~~~~~~~l~~ 90 (192)
+.++.++|+|.+|++||++|+.. .++|.|.+| ||+++.||| +.+||+||++||||+++..+ ..
T Consensus 2 ~~~v~~ii~~~~~~iLl~~r~~~--~~~~~w~~P-GG~ve~gEt---------~~~Aa~REl~EE~Gl~~~~~-----~~ 64 (129)
T cd04678 2 RVGVGVFVLNPKGKVLLGKRKGS--HGAGTWALP-GGHLEFGES---------FEECAAREVLEETGLHIENV-----QF 64 (129)
T ss_pred ceEEEEEEECCCCeEEEEeccCC--CCCCeEECC-cccccCCCC---------HHHHHHHHHHHHhCCcccce-----EE
Confidence 46889999999999999999864 367999999 999999999 89999999999999997632 33
Q ss_pred eeEEEEEccCCCCcceeEEEEEEEEeeC-CccC---CCccccccEEEecHHHHHHH
Q 029516 91 LGRILYKAPSDGKWGEHELDYLLFIVRD-VSVN---PNPDEVAEYKYVNREQLKEL 142 (192)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~f~~~~~-~~~~---~~~~Ev~~~~Wv~~~el~~~ 142 (192)
++.+...... .+ .+.+..+|.+... .... .+++|+.+++|++++++.++
T Consensus 65 ~~~~~~~~~~-~~--~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~W~~~~~l~~~ 117 (129)
T cd04678 65 LTVTNDVFEE-EG--KHYVTIFVKAEVDDGEAEPNKMEPEKCEGWEWFDWEELPSV 117 (129)
T ss_pred EEEEeEEeCC-CC--cEEEEEEEEEEeCCCCcccCCCCCceeCceEEeCHHHCCCc
Confidence 4433222111 11 2444455555442 2222 25678999999999999975
No 33
>cd03671 Ap4A_hydrolase_plant_like Diadenosine tetraphosphate (Ap4A) hydrolase is a member of the Nudix hydrolase superfamily. Members of this family are well represented in a variety of prokaryotic and eukaryotic organisms. Phylogenetic analysis reveals two distinct subgroups where plant enzymes fall into one group (represented by this subfamily) and fungi/animals/archaea enzymes fall into another. Bacterial enzymes are found in both subfamilies. Ap4A is a potential by-product of aminoacyl tRNA synthesis, and accumulation of Ap4A has been implicated in a range of biological events, such as DNA replication, cellular differentiation, heat shock, metabolic stress, and apoptosis. Ap4A hydrolase cleaves Ap4A asymmetrically into ATP and AMP. It is important in the invasive properties of bacteria and thus presents a potential target for the inhibition of such invasive bacteria. Besides the signature nudix motif (G[X5]E[X7]REUXEEXGU where U is Ile, Leu, or Val), Ap4A hydrolase is structurally
Probab=99.80 E-value=2.1e-18 Score=133.29 Aligned_cols=116 Identities=22% Similarity=0.339 Sum_probs=81.8
Q ss_pred ceEEEEEEEEeCCceEEEeeecCCCCCCCCCccccccccCCCCCChhhhhhhhcHHHHHHHHHHHHhCCCCCCCCCCcee
Q 029516 10 LHRAFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFT 89 (192)
Q Consensus 10 ~h~av~v~i~~~~~~lLL~~R~~~k~~~pg~W~~p~gG~ve~gEs~~~~~~~~~~~eaa~REl~EEtGl~~~~~~~~~l~ 89 (192)
+|.+|+++|+|.++++||+||+... +.|++| ||++++||+ +.+||+||+.||||+.+..+ .
T Consensus 2 ~~~~v~~ii~~~~~~vLL~~r~~~~----~~W~~P-gG~~e~gE~---------~~~aA~REv~EEtGl~~~~~-----~ 62 (147)
T cd03671 2 YRPNVGVVLFNEDGKVFVGRRIDTP----GAWQFP-QGGIDEGED---------PEQAALRELEEETGLDPDSV-----E 62 (147)
T ss_pred CCceEEEEEEeCCCEEEEEEEcCCC----CCEECC-cCCCCCCcC---------HHHHHHHHHHHHHCCCcCce-----E
Confidence 5678999999999999999997653 899999 999999999 89999999999999997642 2
Q ss_pred eeeE----EEEEccCC---CCc---ceeEEEEEEEEee---CCccCCC---ccccccEEEecHHHHHHHHH
Q 029516 90 PLGR----ILYKAPSD---GKW---GEHELDYLLFIVR---DVSVNPN---PDEVAEYKYVNREQLKELLR 144 (192)
Q Consensus 90 ~~~~----~~~~~~~~---~~~---~~~~~~~~f~~~~---~~~~~~~---~~Ev~~~~Wv~~~el~~~~~ 144 (192)
.++. +.|..+.. ..+ ..+...++|.+.. ...+.++ ++|+.+++|++++++.++..
T Consensus 63 ~l~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~E~~~~~W~~~~el~~~~~ 133 (147)
T cd03671 63 IIAEIPDWLRYDLPPELKLKIWGGRYRGQEQKWFLFRFTGDDSEIDLNAPEHPEFDEWRWVPLEELPDLIV 133 (147)
T ss_pred EEEEcCCeeEeeChhhhhccccCCcCCCEEEEEEEEEecCCCccccCCCCCCCCEeeEEeCCHHHHHHhch
Confidence 2332 33443321 000 0122334444432 1333333 57999999999999998754
No 34
>cd04691 Nudix_Hydrolase_32 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.80 E-value=1.4e-18 Score=129.45 Aligned_cols=108 Identities=22% Similarity=0.184 Sum_probs=77.4
Q ss_pred EEEEEEeCCceEEEeeecCCCCCCCCCccccccccCCCCCChhhhhhhhcHHHHHHHHHHHHhCCCCCCCCCCceeeeeE
Q 029516 14 FSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPLGR 93 (192)
Q Consensus 14 v~v~i~~~~~~lLL~~R~~~k~~~pg~W~~p~gG~ve~gEs~~~~~~~~~~~eaa~REl~EEtGl~~~~~~~~~l~~~~~ 93 (192)
|.++|++. +++||+||+..+..+||.|++| ||++++||| +.+||+||++||||+++.. +..++.
T Consensus 3 v~~vi~~~-~~vLL~rR~~~~~~~~g~w~lP-gG~ve~gE~---------~~~aa~REl~EEtGl~~~~-----~~~l~~ 66 (117)
T cd04691 3 VVGVLFSD-DKVLLERRSLTKNADPGKLNIP-GGHIEAGES---------QEEALLREVQEELGVDPLS-----YTYLCS 66 (117)
T ss_pred EEEEEEEC-CEEEEEEeCCCCCCCCCeEECc-ceeecCCCC---------HHHHHHHHHHHHHCCCccc-----ceEEEE
Confidence 34445554 8999999987765689999999 999999999 8999999999999998642 234444
Q ss_pred EEEEccCCCCcceeEEEEEEEEee-CCccCCCccccccEEEecHHHHHHHHHh
Q 029516 94 ILYKAPSDGKWGEHELDYLLFIVR-DVSVNPNPDEVAEYKYVNREQLKELLRK 145 (192)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~f~~~~-~~~~~~~~~Ev~~~~Wv~~~el~~~~~~ 145 (192)
+.+. .. .....++|.+.. .+. +..+|+.+++|++++++..+...
T Consensus 67 ~~~~--~~----~~~~~~~~~~~~~~~~--~~~~E~~~~~W~~~~~l~~~~~~ 111 (117)
T cd04691 67 LYHP--TS----ELQLLHYYVVTFWQGE--IPAQEAAEVHWMTANDIVLASEA 111 (117)
T ss_pred Eecc--CC----CeEEEEEEEEEEecCC--CCcccccccEEcCHHHcchhhhh
Confidence 3321 11 123345555543 333 33489999999999999876554
No 35
>cd04673 Nudix_Hydrolase_15 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.79 E-value=2.2e-18 Score=127.68 Aligned_cols=112 Identities=21% Similarity=0.190 Sum_probs=80.1
Q ss_pred EEEEEEEeCCceEEEeeecCCCCCCCCCccccccccCCCCCChhhhhhhhcHHHHHHHHHHHHhCCCCCCCCCCceeeee
Q 029516 13 AFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPLG 92 (192)
Q Consensus 13 av~v~i~~~~~~lLL~~R~~~k~~~pg~W~~p~gG~ve~gEs~~~~~~~~~~~eaa~REl~EEtGl~~~~~~~~~l~~~~ 92 (192)
+++++|++. +++||+||... .+++.|.+| ||++++||| +.+||+||++||||+++... .+++
T Consensus 2 ~v~~ii~~~-~~vLl~~r~~~--~~~~~w~~P-gG~ie~gE~---------~~~aa~RE~~EEtGl~~~~~-----~~~~ 63 (122)
T cd04673 2 AVGAVVFRG-GRVLLVRRANP--PDAGLWSFP-GGKVELGET---------LEQAALRELLEETGLEAEVG-----RLLT 63 (122)
T ss_pred cEEEEEEEC-CEEEEEEEcCC--CCCCeEECC-CcccCCCCC---------HHHHHHHHHHHhhCcEeeec-----eeEE
Confidence 567777765 78999998753 368999999 999999999 89999999999999997632 3445
Q ss_pred EEEEEccCC-CCcceeEEEEEEEEeeC-CccCCCccccccEEEecHHHHHHHH
Q 029516 93 RILYKAPSD-GKWGEHELDYLLFIVRD-VSVNPNPDEVAEYKYVNREQLKELL 143 (192)
Q Consensus 93 ~~~~~~~~~-~~~~~~~~~~~f~~~~~-~~~~~~~~Ev~~~~Wv~~~el~~~~ 143 (192)
.+.+..+.. +....+.++++|.+... ... .+++|+.+++|++++++.++.
T Consensus 64 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~E~~~~~w~~~~el~~~~ 115 (122)
T cd04673 64 VVDVIERDAAGRVEFHYVLIDFLCRYLGGEP-VAGDDALDARWVPLDELAALS 115 (122)
T ss_pred EEEEeeccCCCccceEEEEEEEEEEeCCCcc-cCCcccceeEEECHHHHhhCc
Confidence 444433221 11122445556666543 333 445789999999999999763
No 36
>cd03675 Nudix_Hydrolase_2 Contains a crystal structure of the Nudix hydrolase from Nitrosomonas europaea, which has an unknown function. In general, members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity. They also contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which forms a structural motif that functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability,
Probab=99.79 E-value=5.5e-18 Score=128.20 Aligned_cols=125 Identities=20% Similarity=0.227 Sum_probs=87.3
Q ss_pred EEEEEEeCCceEEEeeecCCCCCCCCCccccccccCCCCCChhhhhhhhcHHHHHHHHHHHHhCCCCCCCCCCceeeeeE
Q 029516 14 FSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPLGR 93 (192)
Q Consensus 14 v~v~i~~~~~~lLL~~R~~~k~~~pg~W~~p~gG~ve~gEs~~~~~~~~~~~eaa~REl~EEtGl~~~~~~~~~l~~~~~ 93 (192)
|++++. .++++||.+|... .++.|.+| ||++++||| +.+||.||++||||+++... ..++.
T Consensus 3 v~~ii~-~~~~vLlv~r~~~---~~~~w~~P-gG~ve~gEs---------~~~aa~REl~EEtGl~~~~~-----~~~~~ 63 (134)
T cd03675 3 VAAVVE-RDGRFLLVEEETD---GGLVFNQP-AGHLEPGES---------LIEAAVRETLEETGWHVEPT-----ALLGI 63 (134)
T ss_pred EEEEEE-ECCEEEEEEEccC---CCceEECC-CccCCCCCC---------HHHHHHHHHHHHHCcccccc-----eEEEE
Confidence 445554 5689999998654 46899999 999999999 89999999999999998632 33444
Q ss_pred EEEEccCCCCcceeEEEEEEEEeeCC-cc-CCCccccccEEEecHHHHHHHHHhhcCCCCCcccChhHHHHHHHHHH
Q 029516 94 ILYKAPSDGKWGEHELDYLLFIVRDV-SV-NPNPDEVAEYKYVNREQLKELLRKADAGEEGLKLSPWFRLVVDNFLF 168 (192)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~f~~~~~~-~~-~~~~~Ev~~~~Wv~~~el~~~~~~~~~~~~~~~~~p~~~~~~~~~l~ 168 (192)
+.+..+.... ....++|.+.... .. ....+|+.++.|++++++..+... ..+|....++.+|+.
T Consensus 64 ~~~~~~~~~~---~~~~~~f~~~~~~~~~~~~~~~e~~~~~w~~~~el~~~~~~--------~~~~~~~~~i~~~l~ 129 (134)
T cd03675 64 YQWTAPDSDT---TYLRFAFAAELLEHLPDQPLDSGIVRAHWLTLEEILALAAR--------LRSPLVLRCIEDYLA 129 (134)
T ss_pred EEeecCCCCe---eEEEEEEEEEECCCCCCCCCCCCceeeEEEeHHHHHhhhhh--------hcCchHHHHHHHHHh
Confidence 4444332111 2233455554432 22 234468999999999999998653 357778888887764
No 37
>cd03429 NADH_pyrophosphatase NADH pyrophosphatase, a member of the Nudix hydrolase superfamily, catalyzes the cleavage of NADH into reduced nicotinamide mononucleotide (NMNH) and AMP. Like other members of the Nudix family, it requires a divalent cation, such as Mg2+ or Mn2+, for activity. Members of this family are also recognized by the Nudix motif, a highly conserved 23-residue block (GX5EX7REUXEEXGU, where U = I, L or V), that functions as a metal binding and catalytic site. A block of 8 conserved amino acids downstream of the nudix motif is thought to give NADH pyrophosphatase its specificity for NADH. NADH pyrophosphatase forms a dimer.
Probab=99.79 E-value=1.5e-18 Score=131.86 Aligned_cols=105 Identities=18% Similarity=0.282 Sum_probs=79.9
Q ss_pred EEEEEEEeCCceEEEeeecCCCCCCCCCccccccccCCCCCChhhhhhhhcHHHHHHHHHHHHhCCCCCCCCCCceeeee
Q 029516 13 AFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPLG 92 (192)
Q Consensus 13 av~v~i~~~~~~lLL~~R~~~k~~~pg~W~~p~gG~ve~gEs~~~~~~~~~~~eaa~REl~EEtGl~~~~~~~~~l~~~~ 92 (192)
+|.+++++.++++||+||... .+|.|++| ||+++.||+ +.+||+||++||||+++.. +.+++
T Consensus 2 ~v~i~l~~~~~~vLL~~r~~~---~~~~w~lP-gG~ie~gEt---------~~~aA~REl~EEtGl~~~~-----~~~l~ 63 (131)
T cd03429 2 AVIVLVIDGGDRILLARQPRF---PPGMYSLL-AGFVEPGES---------LEEAVRREVKEEVGIRVKN-----IRYVG 63 (131)
T ss_pred eEEEEEEeCCCEEEEEEecCC---CCCcCcCC-cccccCCCC---------HHHHHhhhhhhccCceeee-----eEEEe
Confidence 577888888889999998642 26899999 999999999 8999999999999999863 34444
Q ss_pred EEEEEccCCCCcceeEEEEEEEEeeC-CccCCCccccccEEEecHHHHHHH
Q 029516 93 RILYKAPSDGKWGEHELDYLLFIVRD-VSVNPNPDEVAEYKYVNREQLKEL 142 (192)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~f~~~~~-~~~~~~~~Ev~~~~Wv~~~el~~~ 142 (192)
...+..+ +.+.++|.+... ....++++|+.+++|++++++.++
T Consensus 64 ~~~~~~~-------~~~~~~f~~~~~~~~~~~~~~E~~~~~w~~~~el~~~ 107 (131)
T cd03429 64 SQPWPFP-------SSLMLGFTAEADSGEIVVDDDELEDARWFSRDEVRAA 107 (131)
T ss_pred ecCCCCC-------ceEEEEEEEEEcCCcccCCchhhhccEeecHHHHhhc
Confidence 4322211 233445555543 455667789999999999999997
No 38
>cd04680 Nudix_Hydrolase_21 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.79 E-value=2.2e-18 Score=127.43 Aligned_cols=105 Identities=21% Similarity=0.206 Sum_probs=78.8
Q ss_pred EEEEEEEeCCceEEEeeecCCCCCCCCCccccccccCCCCCChhhhhhhhcHHHHHHHHHHHHhCCCCC-CCCCCceeee
Q 029516 13 AFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAE-DVPVDEFTPL 91 (192)
Q Consensus 13 av~v~i~~~~~~lLL~~R~~~k~~~pg~W~~p~gG~ve~gEs~~~~~~~~~~~eaa~REl~EEtGl~~~-~~~~~~l~~~ 91 (192)
+++++++|.+|++||+||+.. +.|.+| ||++++||| +.+||+||++||||+.+. .. ..+
T Consensus 2 ~~~~~i~~~~~~vLL~~r~~~-----~~w~~P-gG~ve~gEt---------~~~aa~REl~EEtG~~~~~~~-----~~~ 61 (120)
T cd04680 2 GARAVVTDADGRVLLVRHTYG-----PGWYLP-GGGLERGET---------FAEAARRELLEELGIRLAVVA-----ELL 61 (120)
T ss_pred ceEEEEECCCCeEEEEEECCC-----CcEeCC-CCcCCCCCC---------HHHHHHHHHHHHHCCcccccc-----ceE
Confidence 578889999999999988633 389999 999999999 899999999999999986 32 345
Q ss_pred eEEEEEccCCCCcceeEEEEEEEEeeC-CccCCCccccccEEEecHHHHHHH
Q 029516 92 GRILYKAPSDGKWGEHELDYLLFIVRD-VSVNPNPDEVAEYKYVNREQLKEL 142 (192)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~~f~~~~~-~~~~~~~~Ev~~~~Wv~~~el~~~ 142 (192)
+.+.+.... .....++|.+... .....+++|+.+++|++++++.++
T Consensus 62 ~~~~~~~~~-----~~~~~~~f~~~~~~~~~~~~~~E~~~~~w~~~~~l~~~ 108 (120)
T cd04680 62 GVYYHSASG-----SWDHVIVFRARADTQPVIRPSHEISEARFFPPDALPEP 108 (120)
T ss_pred EEEecCCCC-----CceEEEEEEecccCCCccCCcccEEEEEEECHHHCccc
Confidence 554443221 1234556666543 222456689999999999999864
No 39
>cd04677 Nudix_Hydrolase_18 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.78 E-value=1.7e-18 Score=130.31 Aligned_cols=113 Identities=29% Similarity=0.444 Sum_probs=80.3
Q ss_pred ceEEEEEEEEeCCceEEEeeecCCCCCCCCCccccccccCCCCCChhhhhhhhcHHHHHHHHHHHHhCCCCCCCCCCcee
Q 029516 10 LHRAFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFT 89 (192)
Q Consensus 10 ~h~av~v~i~~~~~~lLL~~R~~~k~~~pg~W~~p~gG~ve~gEs~~~~~~~~~~~eaa~REl~EEtGl~~~~~~~~~l~ 89 (192)
++.++++++++.++++||++|+.. |.|++| ||++++||| +.+||+||++||||+.+... .
T Consensus 6 ~~~~~~~~v~~~~~~vLL~~r~~~-----~~w~~P-gG~v~~gEt---------~~~aa~REl~EE~Gi~~~~~-----~ 65 (132)
T cd04677 6 ILVGAGVILLNEQGEVLLQKRSDT-----GDWGLP-GGAMELGES---------LEETARRELKEETGLEVEEL-----E 65 (132)
T ss_pred cccceEEEEEeCCCCEEEEEecCC-----CcEECC-eeecCCCCC---------HHHHHHHHHHHHhCCeeeee-----E
Confidence 567888889999899999998743 789999 999999999 89999999999999998643 2
Q ss_pred eeeEE----EEEccCCCCcceeEEEEEEEEee--CCccCCCccccccEEEecHHHHHHHHH
Q 029516 90 PLGRI----LYKAPSDGKWGEHELDYLLFIVR--DVSVNPNPDEVAEYKYVNREQLKELLR 144 (192)
Q Consensus 90 ~~~~~----~~~~~~~~~~~~~~~~~~f~~~~--~~~~~~~~~Ev~~~~Wv~~~el~~~~~ 144 (192)
.++.+ .|..+..+. .+..+.+|++.. ...+..+.+|+.+++|++++++.+++.
T Consensus 66 ~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~e~~~~~W~~~~e~~~~~~ 124 (132)
T cd04677 66 LLGVYSGKEFYVKPNGDD--EQYIVTLYYVTKVFGGKLVPDGDETLELKFFSLDELPELIN 124 (132)
T ss_pred EEEEecCCceeecCCCCc--EEEEEEEEEEEeccCCcccCCCCceeeEEEEChhHCccchh
Confidence 22221 122221111 133333343332 233355678999999999999987654
No 40
>cd04699 Nudix_Hydrolase_39 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.78 E-value=6.1e-18 Score=126.26 Aligned_cols=116 Identities=17% Similarity=0.179 Sum_probs=80.2
Q ss_pred EEEEEEEEeCCceEEEeeecCCCCCCCCCccccccccCCCCCChhhhhhhhcHHHHHHHHHHHHhCCCCCCCCCCceeee
Q 029516 12 RAFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPL 91 (192)
Q Consensus 12 ~av~v~i~~~~~~lLL~~R~~~k~~~pg~W~~p~gG~ve~gEs~~~~~~~~~~~eaa~REl~EEtGl~~~~~~~~~l~~~ 91 (192)
.++.++|++++|++||+||+..+..++|.|++| ||++++||| +.+||+||++||||+.+... ..+
T Consensus 2 ~~v~~vv~~~~~~iLl~kr~~~~~~~~g~w~~P-gG~ve~gEs---------~~~aa~RE~~EE~Gl~~~~~-----~~~ 66 (129)
T cd04699 2 VAVAALIVKDVGRILILKRSKDERTAPGKWELP-GGKVEEGET---------FEEALKREVYEETGLTVTPF-----LRY 66 (129)
T ss_pred ceEEEEEECCCCcEEEEEecCCCCCCCCcCcCC-ccCccCCCC---------HHHHHHHHHHHhhCcEEEee-----eee
Confidence 356777888778999999987765579999999 999999999 79999999999999987632 222
Q ss_pred eEEEEEccCCCCcceeEEEEEEEEeeCCccCCCccccccEEEecHHHHHHHHHh
Q 029516 92 GRILYKAPSDGKWGEHELDYLLFIVRDVSVNPNPDEVAEYKYVNREQLKELLRK 145 (192)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~Ev~~~~Wv~~~el~~~~~~ 145 (192)
+...+.. .. . ..+...++|.+........+++|+.+++|++++++..+...
T Consensus 67 ~~~~~~~-~~-~-~~~~~~~~~~~~~~~~~~~~~~e~~~~~w~~~~el~~~~~~ 117 (129)
T cd04699 67 PSTVTHE-DS-G-VYNVIYLVFVCEALSGAVKLSDEHEEYAWVTLEELAILKAD 117 (129)
T ss_pred eEEEEEc-CC-C-EEEEEEEEEEeeecCCcccCChhheEEEEecHHHhhhhhcc
Confidence 2222221 11 1 11233334444332223335578899999999999766543
No 41
>PRK00714 RNA pyrophosphohydrolase; Reviewed
Probab=99.78 E-value=1.5e-17 Score=130.18 Aligned_cols=119 Identities=18% Similarity=0.266 Sum_probs=83.8
Q ss_pred cCCcceEEEEEEEEeCCceEEEeeecCCCCCCCCCccccccccCCCCCChhhhhhhhcHHHHHHHHHHHHhCCCCCCCCC
Q 029516 6 SLNLLHRAFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPV 85 (192)
Q Consensus 6 ~~~~~h~av~v~i~~~~~~lLL~~R~~~k~~~pg~W~~p~gG~ve~gEs~~~~~~~~~~~eaa~REl~EEtGl~~~~~~~ 85 (192)
....+|.+|+++|+|.+|++||+||+.. |+.|++| ||++++||+ +.+||.||+.||||+.+..+
T Consensus 3 ~~~~~~~~v~~~i~~~~g~vLL~~r~~~----~~~w~~P-~G~~~~gE~---------~~~aa~REl~EEtG~~~~~~-- 66 (156)
T PRK00714 3 DDDGYRPNVGIILLNRQGQVFWGRRIGQ----GHSWQFP-QGGIDPGET---------PEQAMYRELYEEVGLRPEDV-- 66 (156)
T ss_pred CCCCCCCeEEEEEEecCCEEEEEEEcCC----CCeEECC-cccCCCCcC---------HHHHHHHHHHHHhCCCccce--
Confidence 3446888999999999999999998742 5899999 999999999 89999999999999987632
Q ss_pred CceeeeeE----EEEEccC------CCCcceeEEEEEEEEee---CCccCC---CccccccEEEecHHHHHHHHH
Q 029516 86 DEFTPLGR----ILYKAPS------DGKWGEHELDYLLFIVR---DVSVNP---NPDEVAEYKYVNREQLKELLR 144 (192)
Q Consensus 86 ~~l~~~~~----~~~~~~~------~~~~~~~~~~~~f~~~~---~~~~~~---~~~Ev~~~~Wv~~~el~~~~~ 144 (192)
..++. +.|..+. ..... ....++|++.. ...+.+ +++|+.+++|++++++.+++.
T Consensus 67 ---~~~~~~~~~~~y~~~~~~~~~~~~~~~-~~~~~~fl~~~~~~~~~~~l~~~~~~E~~~~~W~~~del~~~~~ 137 (156)
T PRK00714 67 ---EILAETRDWLRYDLPKRLVRRSKGVYR-GQKQKWFLLRLTGDDSEINLNTTSHPEFDAWRWVSYWYPLDQVV 137 (156)
T ss_pred ---EEEEEcCCeEEecCcHHHhhccCCccc-CcEEEEEEEEecCCCccccCCCCCCCCeeeeEeCCHHHHHHhch
Confidence 22332 2333321 11111 11234454443 223333 336999999999999998754
No 42
>cd04670 Nudix_Hydrolase_12 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.77 E-value=8.4e-18 Score=126.21 Aligned_cols=108 Identities=22% Similarity=0.261 Sum_probs=75.7
Q ss_pred eEEEEEEEEeCCceEEEeeecCCCCCCCCCccccccccCCCCCChhhhhhhhcHHHHHHHHHHHHhCCCCCCCCCCceee
Q 029516 11 HRAFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTP 90 (192)
Q Consensus 11 h~av~v~i~~~~~~lLL~~R~~~k~~~pg~W~~p~gG~ve~gEs~~~~~~~~~~~eaa~REl~EEtGl~~~~~~~~~l~~ 90 (192)
+.+|+++|+|++++|||.||... ++|.|.+| ||+++.||| +.+||+||++||||+.+... ..
T Consensus 2 ~~~~~~~v~~~~~~vLl~~r~~~---~~~~w~~P-GG~ve~gEt---------~~~aa~RE~~EE~Gl~~~~~-----~~ 63 (127)
T cd04670 2 TVGVGGLVLNEKNEVLVVQERNK---TPNGWKLP-GGLVDPGED---------IFDGAVREVLEETGIDTEFV-----SV 63 (127)
T ss_pred eeEEEEEEEcCCCeEEEEEccCC---CCCcEECC-CccCCCCCC---------HHHHHHHHHHHHHCCCccee-----EE
Confidence 45788899999899999887543 67999999 999999999 89999999999999987532 22
Q ss_pred eeEEEEEccCCCCcceeEEEEEEEEee---CCccCCCccccccEEEecHHHHHH
Q 029516 91 LGRILYKAPSDGKWGEHELDYLLFIVR---DVSVNPNPDEVAEYKYVNREQLKE 141 (192)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~f~~~~---~~~~~~~~~Ev~~~~Wv~~~el~~ 141 (192)
++...+ .+.. . +....+|.+.. ...+.++++|+.+++|++++++.+
T Consensus 64 ~~~~~~-~~~~--~--~~~~~~~~~~~~~~~~~~~~~~~E~~~~~w~~~~el~~ 112 (127)
T cd04670 64 VGFRHA-HPGA--F--GKSDLYFICRLKPLSFDINFDTSEIAAAKWMPLEEYIS 112 (127)
T ss_pred EEEEec-CCCC--c--CceeEEEEEEEccCcCcCCCChhhhheeEEEcHHHHhc
Confidence 322211 1111 1 11112222222 233456678999999999999965
No 43
>cd04676 Nudix_Hydrolase_17 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.76 E-value=7.2e-18 Score=125.35 Aligned_cols=110 Identities=19% Similarity=0.210 Sum_probs=77.2
Q ss_pred eEEEEEEEEeCCceEEEeeecCCCCCCCCCccccccccCCCCCChhhhhhhhcHHHHHHHHHHHHhCCCCCCCCCCceee
Q 029516 11 HRAFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTP 90 (192)
Q Consensus 11 h~av~v~i~~~~~~lLL~~R~~~k~~~pg~W~~p~gG~ve~gEs~~~~~~~~~~~eaa~REl~EEtGl~~~~~~~~~l~~ 90 (192)
+.+|+++|+|+++++||+||+.. |.|++| ||+++.||+ +.+||+||+.||||+++... ..
T Consensus 2 ~~~v~~ii~~~~~~vLl~~r~~~-----~~w~lP-gG~v~~~E~---------~~~aa~REl~EE~Gl~~~~~-----~~ 61 (129)
T cd04676 2 LPGVTAVVRDDEGRVLLIRRSDN-----GLWALP-GGAVEPGES---------PADTAVREVREETGLDVEVT-----GL 61 (129)
T ss_pred cceEEEEEECCCCeEEEEEecCC-----CcEECC-eeccCCCCC---------HHHHHHHHHHHHhCceeEee-----EE
Confidence 35678888898899999998753 899999 999999999 89999999999999987532 22
Q ss_pred eeEE-----EEEccCCCCcceeEEEEEEEEee-CCccCCCccccccEEEecHHHHHHH
Q 029516 91 LGRI-----LYKAPSDGKWGEHELDYLLFIVR-DVSVNPNPDEVAEYKYVNREQLKEL 142 (192)
Q Consensus 91 ~~~~-----~~~~~~~~~~~~~~~~~~f~~~~-~~~~~~~~~Ev~~~~Wv~~~el~~~ 142 (192)
++.+ .+..+. +. ..+.+.++|.+.. +.......+|..+++|++++++..+
T Consensus 62 ~~~~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~e~~~~~w~~~~el~~~ 117 (129)
T cd04676 62 VGIYTGPVHVVTYPN-GD-VRQYLDITFRCRVVGGELRVGDDESLDVAWFDPDGLPPL 117 (129)
T ss_pred EEEeecccceeecCC-CC-cEEEEEEEEEEEeeCCeecCCCCceeEEEEEChhhCccc
Confidence 2211 111111 11 1244445555433 3333345678899999999999875
No 44
>cd04689 Nudix_Hydrolase_30 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U=I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate sp
Probab=99.76 E-value=1.9e-17 Score=123.98 Aligned_cols=108 Identities=20% Similarity=0.242 Sum_probs=77.3
Q ss_pred eEEEEEEEEeCCceEEEeeecCCCCCCCCCccccccccCCCCCChhhhhhhhcHHHHHHHHHHHHhCCCCCCCCCCceee
Q 029516 11 HRAFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTP 90 (192)
Q Consensus 11 h~av~v~i~~~~~~lLL~~R~~~k~~~pg~W~~p~gG~ve~gEs~~~~~~~~~~~eaa~REl~EEtGl~~~~~~~~~l~~ 90 (192)
|..|+++|++ ++++||++|.. .+.|.+| ||++++||| +.+||+||++||||+++.. ..+
T Consensus 1 ~~~~~~vi~~-~~~vLlv~~~~-----~~~~~lP-GG~ve~gEt---------~~~aa~REl~EEtGl~~~~-----~~~ 59 (125)
T cd04689 1 HLRARAIVRA-GNKVLLARVIG-----QPHYFLP-GGHVEPGET---------AENALRRELQEELGVAVSD-----GRF 59 (125)
T ss_pred CeEEEEEEEe-CCEEEEEEecC-----CCCEECC-CCcCCCCCC---------HHHHHHHHHHHHhCceeec-----cEE
Confidence 4567777774 67999998753 2689999 999999999 8999999999999999863 244
Q ss_pred eeEEEEEccCCCCcceeEEEEEEEEeeCC----ccCCCccccccEEEecHHHHH
Q 029516 91 LGRILYKAPSDGKWGEHELDYLLFIVRDV----SVNPNPDEVAEYKYVNREQLK 140 (192)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~f~~~~~~----~~~~~~~Ev~~~~Wv~~~el~ 140 (192)
++.+.+.....+.+ .+.+.++|.+.... .....++|+.+++|++++++.
T Consensus 60 l~~~~~~~~~~~~~-~~~~~~~f~~~~~~~~~~~~~~~~~e~~~~~W~~~~el~ 112 (125)
T cd04689 60 LGAIENQWHEKGVR-THEINHIFAVESSWLASDGPPQADEDHLSFSWVPVSDLS 112 (125)
T ss_pred EEEEeeeeccCCce-EEEEEEEEEEEcccccccCCccCccceEEEEEccHHHcc
Confidence 55554433333332 35666777765421 122345678999999999965
No 45
>cd04688 Nudix_Hydrolase_29 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.75 E-value=2.4e-17 Score=123.52 Aligned_cols=109 Identities=22% Similarity=0.319 Sum_probs=76.3
Q ss_pred eEEEEEEEEeCCceEEEeeecCCCCCCCCCccccccccCCCCCChhhhhhhhcHHHHHHHHHHHHhCCCCCCCCCCceee
Q 029516 11 HRAFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTP 90 (192)
Q Consensus 11 h~av~v~i~~~~~~lLL~~R~~~k~~~pg~W~~p~gG~ve~gEs~~~~~~~~~~~eaa~REl~EEtGl~~~~~~~~~l~~ 90 (192)
|+++++++. +++|||+||+. .+.|.+| ||+++.||+ +.+||+||+.||||+++... ..
T Consensus 2 ~~v~~vi~~--~~~vLl~~~~~-----~~~w~lP-gG~ve~gEs---------~~~aa~RE~~EEtGl~~~~~-----~~ 59 (126)
T cd04688 2 VRAAAIIIH--NGKLLVQKNPD-----ETFYRPP-GGGIEFGES---------SEEALIREFKEELGLKIEIT-----RL 59 (126)
T ss_pred eEEEEEEEE--CCEEEEEEeCC-----CCeEECC-CccccCCCC---------HHHHHHHHHHHHhCCceecc-----ee
Confidence 567666664 35999998864 4789999 999999999 89999999999999987643 33
Q ss_pred eeEEEEEccCCCCcceeEEEEEEEEeeCC-ccC-------CCccccccEEEecHHHHHHH
Q 029516 91 LGRILYKAPSDGKWGEHELDYLLFIVRDV-SVN-------PNPDEVAEYKYVNREQLKEL 142 (192)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~f~~~~~~-~~~-------~~~~Ev~~~~Wv~~~el~~~ 142 (192)
++...+.....+. ..+.++++|.+.... ... .+++|+.++.|++++++..+
T Consensus 60 ~~~~~~~~~~~~~-~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~e~~~~~W~~~~~l~~~ 118 (126)
T cd04688 60 LGVVENIFTYNGK-PGHEIEFYYLVTLLDESLYQQDIEILEEEGEKIVFRWIPIDELKEI 118 (126)
T ss_pred eEEEEEeeccCCc-ccEEEEEEEEEEeCCCcccccccceeccCCCEEEEEEeeHHHcccC
Confidence 4443222222222 125566777665432 222 14578999999999999854
No 46
>cd03672 Dcp2p mRNA decapping enzyme 2 (Dcp2p), the catalytic subunit, and Dcp1p are the two components of the decapping enzyme complex. Decapping is a key step in both general and nonsense-mediated 5'-3' mRNA-decay pathways. Dcp2p contains an all-alpha helical N-terminal domain and a C-terminal domain which has the Nudix fold. While decapping is not dependent on the N-terminus of Dcp2p, it does affect its efficiency. Dcp1p binds the N-terminal domain of Dcp2p stimulating the decapping activity of Dcp2p. Decapping permits the degradation of the transcript and is a site of numerous control inputs. It is responsible for nonsense-mediated decay as well as AU-rich element (ARE)-mediated decay. In addition, it may also play a role in the levels of mRNA. Enzymes belonging to the Nudix superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and are recognized by a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V).
Probab=99.75 E-value=5e-17 Score=125.94 Aligned_cols=108 Identities=14% Similarity=0.158 Sum_probs=74.2
Q ss_pred EEEEEEEeCC-ceEEEeeecCCCCCCCCCccccccccCCCCCChhhhhhhhcHHHHHHHHHHHHhCCCCCCCCCCceeee
Q 029516 13 AFSVFLFNSK-YELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPL 91 (192)
Q Consensus 13 av~v~i~~~~-~~lLL~~R~~~k~~~pg~W~~p~gG~ve~gEs~~~~~~~~~~~eaa~REl~EEtGl~~~~~~~~~l~~~ 91 (192)
+++++++|.+ +++||+||.. ++.|++| ||++++||| +.+||+||++||||+.+... ...
T Consensus 3 ~~gaii~~~~~~~vLLvr~~~-----~~~W~lP-GG~ve~gEs---------~~~AA~REl~EETGl~v~~~-----~~~ 62 (145)
T cd03672 3 VYGAIILNEDLDKVLLVKGWK-----SKSWSFP-KGKINKDED---------DHDCAIREVYEETGFDISKY-----IDK 62 (145)
T ss_pred eeEEEEEeCCCCEEEEEEecC-----CCCEECC-CccCCCCcC---------HHHHHHHHHHHhhCccceec-----ccc
Confidence 5778888865 6999998752 3589999 999999999 89999999999999987632 111
Q ss_pred eEEEEEccCCCCcceeEEEEEEEEe-eCC--ccCC-CccccccEEEecHHHHHHHHHhh
Q 029516 92 GRILYKAPSDGKWGEHELDYLLFIV-RDV--SVNP-NPDEVAEYKYVNREQLKELLRKA 146 (192)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~~f~~~-~~~--~~~~-~~~Ev~~~~Wv~~~el~~~~~~~ 146 (192)
..|..... .... +++|++. ... ...+ +++|+.+++|++++++.++..+.
T Consensus 63 --~~~~~~~~---~~~~-~~~f~~~~~~~~~~~~~~~~~E~~~~~Wv~~~el~~~~~~~ 115 (145)
T cd03672 63 --DDYIELII---RGQN-VKLYIVPGVPEDTPFEPKTRKEISKIEWFDIKDLPTKKNKK 115 (145)
T ss_pred --ceeeeccc---CCcE-EEEEEEecCCCCcccCcCChhhhheEEEeeHHHhhhhhhhc
Confidence 11221111 1122 2344443 222 2223 34799999999999999998764
No 47
>PRK10546 pyrimidine (deoxy)nucleoside triphosphate pyrophosphohydrolase; Provisional
Probab=99.74 E-value=7.2e-17 Score=122.06 Aligned_cols=121 Identities=17% Similarity=0.120 Sum_probs=80.7
Q ss_pred EEEEEEEeCCceEEEeeecCCCCCCCCCccccccccCCCCCChhhhhhhhcHHHHHHHHHHHHhCCCCCCCCCCceeeee
Q 029516 13 AFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPLG 92 (192)
Q Consensus 13 av~v~i~~~~~~lLL~~R~~~k~~~pg~W~~p~gG~ve~gEs~~~~~~~~~~~eaa~REl~EEtGl~~~~~~~~~l~~~~ 92 (192)
++++++ +.+|++||+||+.+. .++|.|++| ||++++||+ +.+||+||+.||||+.+... .+++
T Consensus 6 ~~~~ii-~~~~~vLL~~R~~~~-~~~g~w~~P-gG~ve~gE~---------~~~a~~RE~~EE~Gl~~~~~-----~~~~ 68 (135)
T PRK10546 6 VVAAII-ERDGKILLAQRPAHS-DQAGLWEFA-GGKVEPGES---------QPQALIRELREELGIEATVG-----EYVA 68 (135)
T ss_pred EEEEEE-ecCCEEEEEEccCCC-CCCCcEECC-cccCCCCCC---------HHHHHHHHHHHHHCCccccc-----eeEE
Confidence 344444 567899999997654 478999999 999999999 78999999999999997532 2344
Q ss_pred EEEEEccCCCCcceeEEEEEEEEee-CCccCCCccccccEEEecHHHHHHHHHhhcCCCCCcccChhHHHHHHHHHH
Q 029516 93 RILYKAPSDGKWGEHELDYLLFIVR-DVSVNPNPDEVAEYKYVNREQLKELLRKADAGEEGLKLSPWFRLVVDNFLF 168 (192)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~f~~~~-~~~~~~~~~Ev~~~~Wv~~~el~~~~~~~~~~~~~~~~~p~~~~~~~~~l~ 168 (192)
.+.+.... . +...++|.+.. .+. +.+.|..+++|++++++..+ .+.|..+.+++.|+.
T Consensus 69 ~~~~~~~~-~----~~~~~~~~~~~~~~~--~~~~e~~~~~W~~~~el~~~-----------~~~~~~~~~l~~~~~ 127 (135)
T PRK10546 69 SHQREVSG-R----RIHLHAWHVPDFHGE--LQAHEHQALVWCTPEEALRY-----------PLAPADIPLLEAFMA 127 (135)
T ss_pred EEEEecCC-c----EEEEEEEEEEEecCc--ccccccceeEEcCHHHcccC-----------CCCcCcHHHHHHHHH
Confidence 44443221 0 11223343332 222 22356788999999999865 355655666665543
No 48
>cd04690 Nudix_Hydrolase_31 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.74 E-value=4.4e-17 Score=120.40 Aligned_cols=108 Identities=17% Similarity=0.162 Sum_probs=77.7
Q ss_pred EEEEEEEeCCceEEEeeecCCCCCCCCCccccccccCCCCCChhhhhhhhcHHHHHHHHHHHHhCCCCCCCCCCceeeee
Q 029516 13 AFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPLG 92 (192)
Q Consensus 13 av~v~i~~~~~~lLL~~R~~~k~~~pg~W~~p~gG~ve~gEs~~~~~~~~~~~eaa~REl~EEtGl~~~~~~~~~l~~~~ 92 (192)
.+++++++.+|++||.||.. .+.|.+| ||++++||| +.+||+||++||||+.+.. ..+..++
T Consensus 2 ~~~~~v~~~~~~vLl~~r~~-----~~~w~~P-gG~ve~~Es---------~~~aa~REl~EEtGl~~~~---~~~~~~~ 63 (118)
T cd04690 2 IAAALILVRDGRVLLVRKRG-----TDVFYLP-GGKIEAGET---------PLQALIRELSEELGLDLDP---DSLEYLG 63 (118)
T ss_pred eEEEEEEecCCeEEEEEECC-----CCcEECC-CCccCCCCC---------HHHHHHHHHHHHHCCccCh---hheEEEE
Confidence 35667778889999988753 3689999 999999999 8999999999999998753 1245566
Q ss_pred EEEEEccCCCCcceeEEEEEEEEeeCCccCCCccccccEEEecHHHHHH
Q 029516 93 RILYKAPSDGKWGEHELDYLLFIVRDVSVNPNPDEVAEYKYVNREQLKE 141 (192)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~Ev~~~~Wv~~~el~~ 141 (192)
.+.+....... .+...++|.+.....+. ..+|+.+++|++++++..
T Consensus 64 ~~~~~~~~~~~--~~~~~~~f~~~~~~~~~-~~~e~~~~~W~~~~e~~~ 109 (118)
T cd04690 64 TFRAPAANEPG--VDVRATVYVAELTGEPV-PAAEIEEIRWVDYDDPAD 109 (118)
T ss_pred EEecccccCCC--cEEEEEEEEEcccCCcC-CCchhhccEEecHHHccc
Confidence 55443222221 24455667665544333 347999999999999854
No 49
>cd03428 Ap4A_hydrolase_human_like Diadenosine tetraphosphate (Ap4A) hydrolase is a member of the Nudix hydrolase superfamily. Ap4A hydrolases are well represented in a variety of prokaryotic and eukaryotic organisms. Phylogenetic analysis reveals two distinct subgroups where plant enzymes fall into one subfamily and fungi/animals/archaea enzymes, represented by this subfamily, fall into another. Bacterial enzymes are found in both subfamilies. Ap4A is a potential by-product of aminoacyl tRNA synthesis, and accumulation of Ap4A has been implicated in a range of biological events, such as DNA replication, cellular differentiation, heat shock, metabolic stress, and apoptosis. Ap4A hydrolase cleaves Ap4A asymmetrically into ATP and AMP. It is important in the invasive properties of bacteria and thus presents a potential target for inhibition of such invasive bacteria. Besides the signature nudix motif (G[X5]E[X7]REUXEEXGU, where U is Ile, Leu, or Val) that functions as a metal binding and
Probab=99.74 E-value=6.8e-17 Score=121.30 Aligned_cols=111 Identities=23% Similarity=0.257 Sum_probs=76.6
Q ss_pred eEEEEEEEEeCCc---eEEEeeecCCCCCCCCCccccccccCCCCCChhhhhhhhcHHHHHHHHHHHHhCCCCCCCCCCc
Q 029516 11 HRAFSVFLFNSKY---ELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDE 87 (192)
Q Consensus 11 h~av~v~i~~~~~---~lLL~~R~~~k~~~pg~W~~p~gG~ve~gEs~~~~~~~~~~~eaa~REl~EEtGl~~~~~~~~~ 87 (192)
.+++++++++.++ ++||.||+. +.|++| ||++++||| +.+||+||+.||||+.+..+...
T Consensus 2 ~~~~g~vi~~~~~~~~~vLl~~~~~------~~w~~P-gG~ve~gEs---------~~~aa~REl~EEtGl~~~~~~~~- 64 (130)
T cd03428 2 ERSAGAIIYRRLNNEIEYLLLQASY------GHWDFP-KGHVEPGED---------DLEAALRETEEETGITAEQLFIV- 64 (130)
T ss_pred ceEEEEEEEEecCCCceEEEEEccC------CcCcCC-cCCCCCCCC---------HHHHHHHHHHHHHCCChhhhhhh-
Confidence 3577777776554 689988874 789999 999999999 89999999999999998753210
Q ss_pred eeeeeEEEEEccCCCCcceeEEEEEEEEeeC--CccCCCccccccEEEecHHHHHHHHH
Q 029516 88 FTPLGRILYKAPSDGKWGEHELDYLLFIVRD--VSVNPNPDEVAEYKYVNREQLKELLR 144 (192)
Q Consensus 88 l~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~--~~~~~~~~Ev~~~~Wv~~~el~~~~~ 144 (192)
-.+...+.+.. . ..+..+++|.+... ..+.++ +|+.++.|++++++.+++.
T Consensus 65 ~~~~~~~~~~~---~--~~~~~~~~f~~~~~~~~~~~~~-~E~~~~~W~~~~e~~~~~~ 117 (130)
T cd03428 65 LGFKETLNYQV---R--GKLKTVTYFLAELRPDVEVKLS-EEHQDYRWLPYEEALKLLT 117 (130)
T ss_pred ccceeEEEccc---c--CcceEEEEEEEEeCCCCccccc-cceeeEEeecHHHHHHHcC
Confidence 00111222211 1 11344455665543 344455 7899999999999998754
No 50
>PRK10776 nucleoside triphosphate pyrophosphohydrolase; Provisional
Probab=99.74 E-value=5.6e-17 Score=120.86 Aligned_cols=121 Identities=17% Similarity=0.254 Sum_probs=82.1
Q ss_pred EEEEEEEEeCCceEEEeeecCCCCCCCCCccccccccCCCCCChhhhhhhhcHHHHHHHHHHHHhCCCCCCCCCCceeee
Q 029516 12 RAFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPL 91 (192)
Q Consensus 12 ~av~v~i~~~~~~lLL~~R~~~k~~~pg~W~~p~gG~ve~gEs~~~~~~~~~~~eaa~REl~EEtGl~~~~~~~~~l~~~ 91 (192)
..++++|.+.+|++||+||+... .++|.|++| ||++++||+ +.+||+||+.||||+++... ..+
T Consensus 5 ~~~~~ii~~~~~~vll~rR~~~~-~~~g~w~~P-gG~~~~gE~---------~~~a~~Re~~EE~gl~~~~~-----~~~ 68 (129)
T PRK10776 5 QIAVGIIRNPNNEIFITRRAADA-HMAGKWEFP-GGKIEAGET---------PEQALIRELQEEVGITVQHA-----TLF 68 (129)
T ss_pred EEEEEEEECCCCEEEEEEecCCC-CCCCeEECC-ceecCCCCC---------HHHHHHHHHHHHHCCceecc-----eEE
Confidence 34455567778899999998654 579999999 999999999 89999999999999986532 334
Q ss_pred eEEEEEccCCCCcceeEEEEEEEEee-CCccCCCccccccEEEecHHHHHHHHHhhcCCCCCcccChhHHHHHHHH
Q 029516 92 GRILYKAPSDGKWGEHELDYLLFIVR-DVSVNPNPDEVAEYKYVNREQLKELLRKADAGEEGLKLSPWFRLVVDNF 166 (192)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~~f~~~~-~~~~~~~~~Ev~~~~Wv~~~el~~~~~~~~~~~~~~~~~p~~~~~~~~~ 166 (192)
+.+.+..+. . +...++|.+.. +.. +.+.|..+++|++.+++... .|.+..+.+++.+
T Consensus 69 ~~~~~~~~~-~----~~~~~~~~~~~~~~~--~~~~e~~~~~W~~~~~l~~~-----------~~p~~~~~~~~~~ 126 (129)
T PRK10776 69 EKLEYEFPD-R----HITLWFWLVESWEGE--PWGKEGQPGRWVSQVALNAD-----------EFPPANEPIIAKL 126 (129)
T ss_pred EEEEeeCCC-c----EEEEEEEEEEEECCc--cCCccCCccEEecHHHCccC-----------CCCcccHHHHHHH
Confidence 444444321 0 11123343332 222 23457788999999998863 3556555555544
No 51
>PLN02325 nudix hydrolase
Probab=99.74 E-value=5.9e-17 Score=125.32 Aligned_cols=114 Identities=22% Similarity=0.239 Sum_probs=78.1
Q ss_pred ceEEEEEEEEeCCceEEEeeecCCCCCCCCCccccccccCCCCCChhhhhhhhcHHHHHHHHHHHHhCCCCCCCCCCcee
Q 029516 10 LHRAFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFT 89 (192)
Q Consensus 10 ~h~av~v~i~~~~~~lLL~~R~~~k~~~pg~W~~p~gG~ve~gEs~~~~~~~~~~~eaa~REl~EEtGl~~~~~~~~~l~ 89 (192)
.+.++.++|++. ++|||+||+... ..|.|.+| ||+++.||| +.+||+||++||||+++... .
T Consensus 8 p~~~v~~vi~~~-~~vLL~rr~~~~--~~g~W~lP-GG~ve~gEs---------~~~aa~REv~EEtGl~v~~~-----~ 69 (144)
T PLN02325 8 PRVAVVVFLLKG-NSVLLGRRRSSI--GDSTFALP-GGHLEFGES---------FEECAAREVKEETGLEIEKI-----E 69 (144)
T ss_pred CeEEEEEEEEcC-CEEEEEEecCCC--CCCeEECC-ceeCCCCCC---------HHHHHHHHHHHHHCCCCcce-----E
Confidence 356677777764 799999987532 34899999 999999999 89999999999999998743 3
Q ss_pred eeeEEEEEccCCCCcceeEEEEEEEEee-CCc---cCCCccccccEEEecHHHHHHH
Q 029516 90 PLGRILYKAPSDGKWGEHELDYLLFIVR-DVS---VNPNPDEVAEYKYVNREQLKEL 142 (192)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~f~~~~-~~~---~~~~~~Ev~~~~Wv~~~el~~~ 142 (192)
.++.+.+........ .|.+..+|.+.. +.. ...+++|+.+++|+++++|...
T Consensus 70 ~l~~~~~~~~~~~~~-~~~i~~~f~~~~~~~~~~~~~~e~~e~~~~~W~~~d~Lp~~ 125 (144)
T PLN02325 70 LLTVTNNVFLEEPKP-SHYVTVFMRAVLADPSQVPQNLEPEKCYGWDWYEWDNLPEP 125 (144)
T ss_pred EEEEecceeecCCCC-cEEEEEEEEEEECCCCCCCCcCCchhcCceEEEChHHCChh
Confidence 344332221111121 244555555543 221 2345567889999999999864
No 52
>PLN02839 nudix hydrolase
Probab=99.74 E-value=5.1e-17 Score=141.60 Aligned_cols=145 Identities=17% Similarity=0.209 Sum_probs=114.3
Q ss_pred CCcceEEEEEEEE---eCCceEEEeeecCCCCCCCCCccccccccCCCCCChhhhhhhhcHHHHHHHHHHHHhCCCCCCC
Q 029516 7 LNLLHRAFSVFLF---NSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDV 83 (192)
Q Consensus 7 ~~~~h~av~v~i~---~~~~~lLL~~R~~~k~~~pg~W~~p~gG~ve~gEs~~~~~~~~~~~eaa~REl~EEtGl~~~~~ 83 (192)
.|....+|++-.+ +.+++++++||+.+|.++||+|++.+||++..||+ +.++++||+.||.||....+
T Consensus 199 fGi~tyGVHlNGyv~~~g~~~lWV~RRS~tK~t~PGmLDn~VAGGi~aGes---------p~etliREa~EEAgLp~~l~ 269 (372)
T PLN02839 199 FGIKGYGVHMNGYVERDGQKFLWIGKRSLSKSTYPGMLDHLVAGGLPHGIS---------CGENLVKECEEEAGISKAIA 269 (372)
T ss_pred cCceeEEEEEEEEEecCCCeEEEeeccCCCCCCCCChhhhccccCccCCCC---------HHHHHHHHHHHHcCCCHHHH
Confidence 3555556665443 23347999999999999999999999999999999 89999999999999986532
Q ss_pred CCCceeeeeEEEEEccCCCCcceeEEEEEEEEee--CCccCCCccccccEEEecHHHHHHHHHhhcCCCCCcccChhHHH
Q 029516 84 PVDEFTPLGRILYKAPSDGKWGEHELDYLLFIVR--DVSVNPNPDEVAEYKYVNREQLKELLRKADAGEEGLKLSPWFRL 161 (192)
Q Consensus 84 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~f~~~~--~~~~~~~~~Ev~~~~Wv~~~el~~~~~~~~~~~~~~~~~p~~~~ 161 (192)
..+...|.+.|......+.. .+..|+|-... +..+.++++|++++.+++++|+.+.+..+ +.|.|.+..
T Consensus 270 --~~~~~~G~VsY~~~~~~g~~-~evly~YDLeLP~df~P~~qDGEVe~F~Lm~v~EV~~~l~~~------~~fKpn~aL 340 (372)
T PLN02839 270 --DRAIAVGAVSYMDIDQYCFK-RDVLFCYDLELPQDFVPKNQDGEVESFKLIPVAQVANVIRKT------SFFKANCSL 340 (372)
T ss_pred --hcceEeEEEEEEEEcCCccc-cCEEEEeeeecCCccccCCCccceeEEEEecHHHHHHHHHcC------CCCCcccHH
Confidence 24677898888754443332 55566666554 34567889999999999999999999864 469999999
Q ss_pred HHHHHHHH
Q 029516 162 VVDNFLFK 169 (192)
Q Consensus 162 ~~~~~l~~ 169 (192)
++-+||.+
T Consensus 341 ViiDFLiR 348 (372)
T PLN02839 341 VIIDFLFR 348 (372)
T ss_pred HHHHHHHH
Confidence 99999864
No 53
>cd04687 Nudix_Hydrolase_28 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.74 E-value=6.2e-17 Score=121.76 Aligned_cols=112 Identities=12% Similarity=0.098 Sum_probs=75.1
Q ss_pred EEEEEEEEeCCceEEEeeecCCCCCCCCCccccccccCCCCCChhhhhhhhcHHHHHHHHHHHHhCCCCCCCCCCceeee
Q 029516 12 RAFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPL 91 (192)
Q Consensus 12 ~av~v~i~~~~~~lLL~~R~~~k~~~pg~W~~p~gG~ve~gEs~~~~~~~~~~~eaa~REl~EEtGl~~~~~~~~~l~~~ 91 (192)
.+++++|++ ++++||+||... .++.|.+| ||+++.||| +++||+||+.||||+.+... ++..+
T Consensus 2 ~~a~~iv~~-~~~vLl~~r~~~---~~~~~~lP-GG~ve~gEt---------~~~aa~RE~~EEtGl~v~~~---~~~~~ 64 (128)
T cd04687 2 NSAKAVIIK-NDKILLIKHHDD---GGVWYILP-GGGQEPGET---------LEDAAHRECKEEIGIDVEIG---PLLFV 64 (128)
T ss_pred cEEEEEEEE-CCEEEEEEEEcC---CCCeEECC-CcccCCCCC---------HHHHHHHHHHHHHCCccccC---cEEEE
Confidence 456777776 579999998643 24789999 999999999 89999999999999998642 22222
Q ss_pred eEEEEEccC---CCCcceeEEEEEEEEeeCC-cc---C-CCccccccEEEecHHHHHHH
Q 029516 92 GRILYKAPS---DGKWGEHELDYLLFIVRDV-SV---N-PNPDEVAEYKYVNREQLKEL 142 (192)
Q Consensus 92 ~~~~~~~~~---~~~~~~~~~~~~f~~~~~~-~~---~-~~~~Ev~~~~Wv~~~el~~~ 142 (192)
..|.... ......|.++++|.+.... .. . ..+.+..+++|++++++.++
T Consensus 65 --~~~~~~~~~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~l~~~ 121 (128)
T cd04687 65 --REYIGHNPTSELPGHFHQVELMFECKIKSGTPAKTPSKPDPNQIGVEWLKLKELGDI 121 (128)
T ss_pred --EEEeccCccccCCCceeEEEEEEEEEECCCCcccccCCCCCCEEeeEEEcHHHhCcc
Confidence 2222111 0111236666777766422 11 1 12235568999999999875
No 54
>cd04695 Nudix_Hydrolase_36 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.73 E-value=1.2e-16 Score=121.00 Aligned_cols=105 Identities=20% Similarity=0.205 Sum_probs=72.0
Q ss_pred eCCceEEEeeecCCCCCCCCCccccccccCCCCCChhhhhhhhcHHHHHHHHHHHHhCCCCCCCCCCceeeeeEEEEEcc
Q 029516 20 NSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPLGRILYKAP 99 (192)
Q Consensus 20 ~~~~~lLL~~R~~~k~~~pg~W~~p~gG~ve~gEs~~~~~~~~~~~eaa~REl~EEtGl~~~~~~~~~l~~~~~~~~~~~ 99 (192)
+.++++||.+|+.. ++|.|.+| ||+++.||| +.+||+||++||||+++..+.. ...+.. .|..+
T Consensus 11 ~~~~~vLl~~r~~~---~~g~w~~P-gG~ve~gEs---------~~~aa~RE~~EEtGl~~~~~~~--~~~~~~-~~~~~ 74 (131)
T cd04695 11 DKETKVLLLKRVKT---LGGFWCHV-AGGVEAGET---------AWQAALRELKEETGISLPELYN--ADYLEQ-FYEAN 74 (131)
T ss_pred CCCCEEEEEEecCC---CCCcEECC-cccccCCCC---------HHHHHHHHHHHHhCCCcccccc--ccceee-EeecC
Confidence 46679999999754 67999999 999999999 8999999999999999864311 111211 13221
Q ss_pred CCCCcceeEEEEEEEEee-CCccCCCccccccEEEecHHHHHHHHH
Q 029516 100 SDGKWGEHELDYLLFIVR-DVSVNPNPDEVAEYKYVNREQLKELLR 144 (192)
Q Consensus 100 ~~~~~~~~~~~~~f~~~~-~~~~~~~~~Ev~~~~Wv~~~el~~~~~ 144 (192)
.. ......+|++.. .......++|+.+++|++++++.++..
T Consensus 75 --~~--~~~~~~~f~~~~~~~~~~~~~~E~~~~~W~~~~e~~~~~~ 116 (131)
T cd04695 75 --DN--RILMAPVFVGFVPPHQEVVLNHEHTEYRWCSFAEALELAP 116 (131)
T ss_pred --Cc--eEEEEEEEEEEecCCCccccCchhcccEecCHHHHHHhcC
Confidence 11 123334455443 222223347999999999999998754
No 55
>cd04671 Nudix_Hydrolase_13 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.73 E-value=5.4e-17 Score=122.23 Aligned_cols=105 Identities=15% Similarity=0.158 Sum_probs=75.9
Q ss_pred EEEEEEEeCCceEEEeeecCCCCCCCCCccccccccCCCCCChhhhhhhhcHHHHHHHHHHHHhCCCCCCCCCCceeeee
Q 029516 13 AFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPLG 92 (192)
Q Consensus 13 av~v~i~~~~~~lLL~~R~~~k~~~pg~W~~p~gG~ve~gEs~~~~~~~~~~~eaa~REl~EEtGl~~~~~~~~~l~~~~ 92 (192)
+++++++|.+|++||++|... .+++.|.+| ||+++.||+ +.+||+||++||||+++... ..++
T Consensus 2 ~~~~vv~~~~~~vLl~~r~~~--~~~~~w~lP-gG~ve~gEt---------~~~aa~REl~EEtG~~~~~~-----~~~~ 64 (123)
T cd04671 2 IVAAVILNNQGEVLLIQEAKR--SCRGKWYLP-AGRMEPGET---------IEEAVKREVKEETGLDCEPT-----TLLS 64 (123)
T ss_pred EEEEEEEcCCCEEEEEEecCC--CCCCeEECc-eeecCCCCC---------HHHHHHHHHHHHHCCeeecc-----eEEE
Confidence 577888898899999998754 357999999 999999999 89999999999999998642 2233
Q ss_pred EEEEEccCCCCcceeEEEEEEEEee-CCccC---CCccccccEEEecHHHHHHH
Q 029516 93 RILYKAPSDGKWGEHELDYLLFIVR-DVSVN---PNPDEVAEYKYVNREQLKEL 142 (192)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~f~~~~-~~~~~---~~~~Ev~~~~Wv~~~el~~~ 142 (192)
.. + . . .+.+.++|.+.. .+.+. .+++|+.+++|++++++...
T Consensus 65 ~~-~-~--~----~~~~~~~f~a~~~~g~~~~~~~~~~e~~~~~W~~~~el~~~ 110 (123)
T cd04671 65 VE-E-Q--G----GSWFRFVFTGNITGGDLKTEKEADSESLQARWYSNKDLPLP 110 (123)
T ss_pred EE-c-c--C----CeEEEEEEEEEEeCCeEccCCCCCcceEEEEEECHHHCCCc
Confidence 21 1 1 1 134455665553 33222 13457889999999999533
No 56
>cd03425 MutT_pyrophosphohydrolase The MutT pyrophosphohydrolase is a prototypical Nudix hydrolase that catalyzes the hydrolysis of nucleoside and deoxynucleoside triphosphates (NTPs and dNTPs) by substitution at a beta-phosphorus to yield a nucleotide monophosphate (NMP) and inorganic pyrophosphate (PPi). This enzyme requires two divalent cations for activity; one coordinates the phosphoryl groups of the NTP/dNTP substrate, and the other coordinates to the enzyme. It also contains the Nudix motif, a highly conserved 23-residue block (GX5EX7REUXEEXGU, where U = I, L or V), that functions as metal binding and catalytic site. MutT pyrophosphohydrolase is important in preventing errors in DNA replication by hydrolyzing mutagenic nucleotides such as 8-oxo-dGTP (a product of oxidative damage), which can mispair with template adenine during DNA replication, to guanine nucleotides.
Probab=99.72 E-value=1.2e-16 Score=117.58 Aligned_cols=108 Identities=21% Similarity=0.250 Sum_probs=78.6
Q ss_pred EEEEEEEeCCceEEEeeecCCCCCCCCCccccccccCCCCCChhhhhhhhcHHHHHHHHHHHHhCCCCCCCCCCceeeee
Q 029516 13 AFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPLG 92 (192)
Q Consensus 13 av~v~i~~~~~~lLL~~R~~~k~~~pg~W~~p~gG~ve~gEs~~~~~~~~~~~eaa~REl~EEtGl~~~~~~~~~l~~~~ 92 (192)
++.++++++++++||++|+..+ .++|.|++| ||+++.+|+ +.+||.||+.||||+.+.. ...++
T Consensus 3 ~~~~~i~~~~~~~Ll~~r~~~~-~~~g~w~~p-~G~~~~~e~---------~~~~a~Re~~EE~g~~~~~-----~~~~~ 66 (124)
T cd03425 3 VVAAIIIDDDGRILIAQRPAGK-HLGGLWEFP-GGKVEPGET---------PEQALVRELREELGIEVEV-----GELLA 66 (124)
T ss_pred EEEEEEECCCCEEEEEEeCCCC-CCCCeEeCC-CcccCCCCC---------HHHHHHHHHHHhhCcEEec-----cceEE
Confidence 4556667877999999998766 689999999 999999999 8999999999999998753 23455
Q ss_pred EEEEEccCCCCcceeEEEEEEEEeeCCccCCCccccccEEEecHHHHHHH
Q 029516 93 RILYKAPSDGKWGEHELDYLLFIVRDVSVNPNPDEVAEYKYVNREQLKEL 142 (192)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~Ev~~~~Wv~~~el~~~ 142 (192)
.+.+..+. .+...++|.+..... ...+.|..++.|++++++..+
T Consensus 67 ~~~~~~~~-----~~~~~~~~~~~~~~~-~~~~~e~~~~~W~~~~el~~~ 110 (124)
T cd03425 67 TVEHDYPD-----KRVTLHVFLVELWSG-EPQLLEHQELRWVPPEELDDL 110 (124)
T ss_pred EEEeeCCC-----CeEEEEEEEEeeeCC-CcccccCceEEEeeHHHcccC
Confidence 55554331 123345555543221 122467889999999999764
No 57
>cd04666 Nudix_Hydrolase_9 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate s
Probab=99.71 E-value=3.5e-16 Score=117.81 Aligned_cols=113 Identities=19% Similarity=0.189 Sum_probs=77.0
Q ss_pred EEEEEEEeCC---ceEEEeeecCCCCCCCCCccccccccCCCCCChhhhhhhhcHHHHHHHHHHHHhCCCCCCCCCCcee
Q 029516 13 AFSVFLFNSK---YELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFT 89 (192)
Q Consensus 13 av~v~i~~~~---~~lLL~~R~~~k~~~pg~W~~p~gG~ve~gEs~~~~~~~~~~~eaa~REl~EEtGl~~~~~~~~~l~ 89 (192)
++++++++.+ +++||.+|... +.|.+| ||+++.||| +.+||+||++||||+..... +.
T Consensus 2 ~~g~v~~~~~~~~~~vLLv~~~~~-----~~w~~P-gG~ve~~E~---------~~~aa~RE~~EEtG~~~~~~----~~ 62 (122)
T cd04666 2 QAGAIPYRETGGEVEVLLVTSRRT-----GRWIVP-KGGPEKDES---------PAEAAAREAWEEAGVRGKIG----KR 62 (122)
T ss_pred EEEEEEEEEcCCceEEEEEEecCC-----CeEECC-CCCcCCCCC---------HHHHHHHHHHHHhCCccccc----ce
Confidence 3556666543 57999887532 789999 999999999 89999999999999987532 14
Q ss_pred eeeEEEEEccCCCCcceeEEEEEEEEeeCCccC-CCccccccEEEecHHHHHHHHHh
Q 029516 90 PLGRILYKAPSDGKWGEHELDYLLFIVRDVSVN-PNPDEVAEYKYVNREQLKELLRK 145 (192)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~-~~~~Ev~~~~Wv~~~el~~~~~~ 145 (192)
+++.+.|..+..+. ..+..+++|.+....... ....++.+++|++++++.+++..
T Consensus 63 ~l~~~~~~~~~~~~-~~~~~~~~f~~~~~~~~~~~~~~e~~~~~W~~~~ea~~~~~~ 118 (122)
T cd04666 63 PLGRFEYRKRSKNR-PPRCEVAVFPLEVTEELDEWPEMHQRKRKWFSPEEAALLVEE 118 (122)
T ss_pred EEEEEEeeecCCCC-CceEEEEEEEEEEeccccCCcccCceEEEEecHHHHHHhcCC
Confidence 56776665443211 113334555554432222 23356789999999999988653
No 58
>cd04672 Nudix_Hydrolase_14 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.71 E-value=1.4e-16 Score=119.17 Aligned_cols=111 Identities=12% Similarity=0.074 Sum_probs=75.2
Q ss_pred EEEEEEEEeCCceEEEeeecCCCCCCCCCccccccccCCCCCChhhhhhhhcHHHHHHHHHHHHhCCCCCCCCCCceeee
Q 029516 12 RAFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPL 91 (192)
Q Consensus 12 ~av~v~i~~~~~~lLL~~R~~~k~~~pg~W~~p~gG~ve~gEs~~~~~~~~~~~eaa~REl~EEtGl~~~~~~~~~l~~~ 91 (192)
.+|.++|+++ +++||.+|.. .|.|.+| ||++++||| +.+||+||++||||+.+.. . .++
T Consensus 3 ~~v~~~i~~~-~~vLL~~~~~-----~~~w~~P-GG~ve~gEs---------~~~aa~REl~EEtG~~~~~---~--~~~ 61 (123)
T cd04672 3 VDVRAAIFKD-GKILLVREKS-----DGLWSLP-GGWADVGLS---------PAENVVKEVKEETGLDVKV---R--KLA 61 (123)
T ss_pred ceEEEEEEEC-CEEEEEEEcC-----CCcEeCC-ccccCCCCC---------HHHHHHHHHHHHhCCeeeE---e--EEE
Confidence 4577778876 7898888753 4899999 999999999 8999999999999998742 1 223
Q ss_pred eEEEEEccCCCCcceeEEEEEEEEee-CCccCCCccccccEEEecHHHHHHHHH
Q 029516 92 GRILYKAPSDGKWGEHELDYLLFIVR-DVSVNPNPDEVAEYKYVNREQLKELLR 144 (192)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~~f~~~~-~~~~~~~~~Ev~~~~Wv~~~el~~~~~ 144 (192)
+...+..........+.+..+|.+.. ...+..+ +|+.+++|++++++.++..
T Consensus 62 ~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~-~E~~~~~W~~~~el~~l~~ 114 (123)
T cd04672 62 AVDDRNKHHPPPQPYQVYKLFFLCEILGGEFKPN-IETSEVGFFALDDLPPLSE 114 (123)
T ss_pred EEeccccccCCCCceEEEEEEEEEEecCCcccCC-CceeeeEEECHHHCccccc
Confidence 32211111111112234444555554 3334444 7899999999999987643
No 59
>PRK00241 nudC NADH pyrophosphatase; Reviewed
Probab=99.71 E-value=7.7e-17 Score=135.86 Aligned_cols=104 Identities=19% Similarity=0.262 Sum_probs=77.0
Q ss_pred EEEEEEEeCCceEEEeeecCCCCCCCCCccccccccCCCCCChhhhhhhhcHHHHHHHHHHHHhCCCCCCCCCCceeeee
Q 029516 13 AFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPLG 92 (192)
Q Consensus 13 av~v~i~~~~~~lLL~~R~~~k~~~pg~W~~p~gG~ve~gEs~~~~~~~~~~~eaa~REl~EEtGl~~~~~~~~~l~~~~ 92 (192)
+|.++|. .++++||.||.... +|.|++| ||++++||| +++||+||++||||+++.. +.+++
T Consensus 134 aViv~V~-~~~~iLL~rr~~~~---~g~wslP-gG~vE~GEs---------~eeAa~REv~EEtGl~v~~-----~~~~~ 194 (256)
T PRK00241 134 CIIVAVR-RGDEILLARHPRHR---NGVYTVL-AGFVEVGET---------LEQCVAREVMEESGIKVKN-----LRYVG 194 (256)
T ss_pred EEEEEEE-eCCEEEEEEccCCC---CCcEeCc-ccCCCCCCC---------HHHHhhhhhhhccCceeee-----eEEEE
Confidence 4444444 45899998876432 6899999 999999999 8999999999999998763 35566
Q ss_pred EEEEEccCCCCcceeEEEEEEEEee-CCccCCCccccccEEEecHHHHHHH
Q 029516 93 RILYKAPSDGKWGEHELDYLLFIVR-DVSVNPNPDEVAEYKYVNREQLKEL 142 (192)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~f~~~~-~~~~~~~~~Ev~~~~Wv~~~el~~~ 142 (192)
...+..+ +.+++.|.+.. ...+.++++|+.+++|++++++..+
T Consensus 195 s~~~~~p-------~~lm~~f~a~~~~~~~~~~~~Ei~~a~W~~~del~~l 238 (256)
T PRK00241 195 SQPWPFP-------HSLMLGFHADYDSGEIVFDPKEIADAQWFRYDELPLL 238 (256)
T ss_pred eEeecCC-------CeEEEEEEEEecCCcccCCcccEEEEEEECHHHCccc
Confidence 5544322 23445566654 3456677789999999999998653
No 60
>cd04669 Nudix_Hydrolase_11 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.71 E-value=1.1e-16 Score=119.78 Aligned_cols=102 Identities=18% Similarity=0.147 Sum_probs=70.2
Q ss_pred EEEEEEeCCceEEEeeecCCCCCCCCCccccccccCCCCCChhhhhhhhcHHHHHHHHHHHHhCCCCCCCCCCceeeeeE
Q 029516 14 FSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPLGR 93 (192)
Q Consensus 14 v~v~i~~~~~~lLL~~R~~~k~~~pg~W~~p~gG~ve~gEs~~~~~~~~~~~eaa~REl~EEtGl~~~~~~~~~l~~~~~ 93 (192)
++++|++.+|++||+||.... .+.|.+| ||+++.||| +.+||+||++||||+++... ..++.
T Consensus 3 ~~~ii~~~~~~vLL~~r~~~~---~~~w~lP-GG~ve~gEs---------~~~a~~REl~EEtGl~~~~~-----~~~~~ 64 (121)
T cd04669 3 ASIVIINDQGEILLIRRIKPG---KTYYVFP-GGGIEEGET---------PEEAAKREALEELGLDVRVE-----EIFLI 64 (121)
T ss_pred eEEEEEeCCCEEEEEEEecCC---CCcEECC-ceeccCCCC---------HHHHHHHHHHHhhCeeEeee-----eEEEE
Confidence 456667777899999986542 4889999 999999999 89999999999999998521 22333
Q ss_pred EEEEccCCCCcceeEEEEEEEEee-CCccCC---------CccccccEEEecHHHHHHH
Q 029516 94 ILYKAPSDGKWGEHELDYLLFIVR-DVSVNP---------NPDEVAEYKYVNREQLKEL 142 (192)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~f~~~~-~~~~~~---------~~~Ev~~~~Wv~~~el~~~ 142 (192)
+.+ + +...++|.+.. .+.+.. +++++.++.|+++++|..+
T Consensus 65 ~~~--~-------~~~~~~f~~~~~~g~~~~~~~~e~~~~~~~~~~~~~Wv~~~el~~l 114 (121)
T cd04669 65 VNQ--N-------GRTEHYFLARVISGKLGLGVGEEFERQSDDNQYHPVWVDLDQLETI 114 (121)
T ss_pred Eee--C-------CcEEEEEEEEEECCeecCCCchhhcccCCCCceEEEEEEHHHcccC
Confidence 322 1 11234455432 222211 1345667999999999875
No 61
>cd04685 Nudix_Hydrolase_26 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily requires a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.70 E-value=3.9e-16 Score=119.33 Aligned_cols=116 Identities=17% Similarity=0.179 Sum_probs=78.2
Q ss_pred EEEEEEEEeCCceEEEeeecCCCCCCCCCccccccccCCCCCChhhhhhhhcHHHHHHHHHHHHhCCCCCCCCCCceeee
Q 029516 12 RAFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPL 91 (192)
Q Consensus 12 ~av~v~i~~~~~~lLL~~R~~~k~~~pg~W~~p~gG~ve~gEs~~~~~~~~~~~eaa~REl~EEtGl~~~~~~~~~l~~~ 91 (192)
|++.++++|.+|+|||++|...+...++.|.+| ||+++.||+ +.+||.||+.||||+.+..+ ..+...
T Consensus 1 ~~~~~~i~~~~g~vLl~r~~~~~~~~~~~w~~P-gG~ve~gE~---------~~~a~~Re~~EE~G~~~~~~--~~~~~~ 68 (133)
T cd04685 1 RAARVVLLDPDDRVLLLRGDDPDSPGPDWWFTP-GGGVEPGES---------PEQAARRELREETGITVADL--GPPVWR 68 (133)
T ss_pred CeEEEEEEcCCCeEEEEEEeCCCCCCCCEEECC-cCCCCCCCC---------HHHHHHHHHHHHHCCccccc--cceEEE
Confidence 578999999999999998876543467899999 999999999 89999999999999998322 112111
Q ss_pred eEEEEEccCCCCcceeEEEEEEEEeeC-Ccc---C---CCccccccEEEecHHHHHHH
Q 029516 92 GRILYKAPSDGKWGEHELDYLLFIVRD-VSV---N---PNPDEVAEYKYVNREQLKEL 142 (192)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~~f~~~~~-~~~---~---~~~~Ev~~~~Wv~~~el~~~ 142 (192)
....|...... .+...++|.+... ..+ . ....++..++|+++++|.+.
T Consensus 69 ~~~~f~~~~~~---~~~~~~~f~~~~~~~~~~~~~~~~~E~~~~~~~~W~~~~el~~~ 123 (133)
T cd04685 69 RDAAFTFLGVD---GRQEERFFLARTPRTEPSPAGWTALERRSILGWRWWTRAELAAT 123 (133)
T ss_pred EEEEEEecCcc---ceeeEEEEEEEcCCccccCCCCChhhhhhcccccCCCHHHHhhC
Confidence 12123222211 1333455555432 121 1 11234668999999999874
No 62
>cd04667 Nudix_Hydrolase_10 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.69 E-value=3.2e-16 Score=115.39 Aligned_cols=95 Identities=19% Similarity=0.237 Sum_probs=69.2
Q ss_pred eCCceEEEeeecCCCCCCCCCccccccccCCCCCChhhhhhhhcHHHHHHHHHHHHhCCCCCCCCCCceeeeeEEEEEcc
Q 029516 20 NSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPLGRILYKAP 99 (192)
Q Consensus 20 ~~~~~lLL~~R~~~k~~~pg~W~~p~gG~ve~gEs~~~~~~~~~~~eaa~REl~EEtGl~~~~~~~~~l~~~~~~~~~~~ 99 (192)
..++++||+||.. |.|++| ||++++||+ +.+||.||++||||+.+.. +.+++.+ .
T Consensus 8 ~~~~~vLlv~r~~------~~w~~P-gG~ve~gE~---------~~~aa~REl~EEtGl~~~~-----~~~~~~~--~-- 62 (112)
T cd04667 8 RRGGRVLLVRKSG------SRWALP-GGKIEPGET---------PLQAARRELQEETGLQGLD-----LLYLFHV--D-- 62 (112)
T ss_pred ecCCEEEEEEcCC------CcEeCC-CCcCCCCCC---------HHHHHHHHHHHHhCCcccc-----eEEEEEE--e--
Confidence 3567999999852 789999 999999999 8999999999999998753 3344432 1
Q ss_pred CCCCcceeEEEEEEEEeeC-CccCCCccccccEEEecHHHHHHHHH
Q 029516 100 SDGKWGEHELDYLLFIVRD-VSVNPNPDEVAEYKYVNREQLKELLR 144 (192)
Q Consensus 100 ~~~~~~~~~~~~~f~~~~~-~~~~~~~~Ev~~~~Wv~~~el~~~~~ 144 (192)
.. +...++|.+... ......++|+.+++|++++++.++..
T Consensus 63 ~~-----~~~~~~f~~~~~~~~~~~~~~e~~~~~W~~~~el~~~~~ 103 (112)
T cd04667 63 GG-----STRHHVFVASVPPSAQPKPSNEIADCRWLSLDALGDLNA 103 (112)
T ss_pred CC-----CEEEEEEEEEcCCcCCCCCchheeEEEEecHHHhhhccc
Confidence 11 233455665433 22333457999999999999998643
No 63
>cd02883 Nudix_Hydrolase Nudix hydrolase is a superfamily of enzymes found in all three kingdoms of life, and it catalyzes the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+ for their activity. Members of this family are recognized by a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which forms a structural motif that functions as a metal binding and catalytic site. Substrates of nudix hydrolase include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance and "house-cleaning" enzy
Probab=99.69 E-value=5.6e-16 Score=112.94 Aligned_cols=110 Identities=22% Similarity=0.331 Sum_probs=80.6
Q ss_pred EEEEEEEeCCceEEEeeecCCCCCCCCCccccccccCCCCCChhhhhhhhcHHHHHHHHHHHHhCCCCCCCCCCceeeee
Q 029516 13 AFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPLG 92 (192)
Q Consensus 13 av~v~i~~~~~~lLL~~R~~~k~~~pg~W~~p~gG~ve~gEs~~~~~~~~~~~eaa~REl~EEtGl~~~~~~~~~l~~~~ 92 (192)
++++++++.++++||++|+.. ++|.|.+| ||+++.+|+ +.+||+||+.||+|+.+.. ....+
T Consensus 2 ~~~~i~~~~~~~ill~kr~~~---~~~~~~~p-~G~~~~~e~---------~~~~a~RE~~EE~Gl~~~~-----~~~~~ 63 (123)
T cd02883 2 AVGAVILDEDGRVLLVRRADS---PGGLWELP-GGGVEPGET---------LEEAAIREVREETGLDVDV-----LRLLG 63 (123)
T ss_pred ceEEEEECCCCCEEEEEEcCC---CCCeEeCC-cccccCCCC---------HHHHHHHHHHHhhCcccee-----eeEEE
Confidence 567888888789999999866 68999999 999999999 8999999999999998752 12344
Q ss_pred EEEEEccCCCCcceeEEEEEEEEeeCC-cc-CCCccccccEEEecHHHHHHHH
Q 029516 93 RILYKAPSDGKWGEHELDYLLFIVRDV-SV-NPNPDEVAEYKYVNREQLKELL 143 (192)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~f~~~~~~-~~-~~~~~Ev~~~~Wv~~~el~~~~ 143 (192)
.+.+..+.. ......++|.+.... .. ..++.|+.+.+|++++++.++.
T Consensus 64 ~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~w~~~~~l~~~~ 113 (123)
T cd02883 64 VYEVESPDE---GEHAVVFVFLARLVGGEPTLLPPDEISEVRWVTLDELPALA 113 (123)
T ss_pred EEEeeccCC---CceEEEEEEEEEeCCCCcCCCCCCccceEEEEcHHHCcccc
Confidence 444443321 124445566665432 22 2556788899999999998743
No 64
>PRK10707 putative NUDIX hydrolase; Provisional
Probab=99.68 E-value=7.1e-16 Score=124.71 Aligned_cols=105 Identities=20% Similarity=0.065 Sum_probs=76.1
Q ss_pred CCceEEEeeecCCCCCCCCCccccccccCCCC-CChhhhhhhhcHHHHHHHHHHHHhCCCCCCCCCCceeeeeEEEEEcc
Q 029516 21 SKYELLLQQRSGTKVTFPLVWTNTCCSHPLYR-ESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPLGRILYKAP 99 (192)
Q Consensus 21 ~~~~lLL~~R~~~k~~~pg~W~~p~gG~ve~g-Es~~~~~~~~~~~eaa~REl~EEtGl~~~~~~~~~l~~~~~~~~~~~ 99 (192)
.++.+|++||+.....++|.|++| ||++|++ |+ +.+||+||+.||||+.+.. +..++.+.....
T Consensus 42 ~~~~vLl~~R~~~~r~~~G~~~~P-GG~~e~~de~---------~~~tA~REl~EEtGl~~~~-----~~~lg~l~~~~~ 106 (190)
T PRK10707 42 PQPTLLLTQRSIHLRKHAGQVAFP-GGAVDPTDAS---------LIATALREAQEEVAIPPSA-----VEVIGVLPPVDS 106 (190)
T ss_pred CCCEEEEEEeCCcccCCCCcEEcC-CcccCCCccc---------HHHHHHHHHHHHHCCCccc-----eEEEEEeeeeec
Confidence 345899999988766789999999 9999986 56 7999999999999999864 456776542222
Q ss_pred CCCCcceeEEEEEEEEeeCCccCCCccccccEEEecHHHHHHHH
Q 029516 100 SDGKWGEHELDYLLFIVRDVSVNPNPDEVAEYKYVNREQLKELL 143 (192)
Q Consensus 100 ~~~~~~~~~~~~~f~~~~~~~~~~~~~Ev~~~~Wv~~~el~~~~ 143 (192)
. .++ +...++++...+....++++|+.++.|++++++.++.
T Consensus 107 ~-~~~--~~~~~v~~~~~~~~~~~d~~Ev~~v~~vpl~e~~~~~ 147 (190)
T PRK10707 107 S-TGY--QVTPVVGIIPPDLPYRANEDEVAAVFEMPLAEALHLG 147 (190)
T ss_pred c-CCc--EEEEEEEEECCCCCCCCChhhhheEEEEeHHHHhCcc
Confidence 2 222 1112222333334556788899999999999998874
No 65
>TIGR00586 mutt mutator mutT protein. All proteins in this family for which functions are known are involved in repairing oxidative damage to dGTP (they are 8-oxo-dGTPases). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.67 E-value=1.9e-15 Score=112.89 Aligned_cols=110 Identities=16% Similarity=0.084 Sum_probs=74.8
Q ss_pred eEEEEEEEEeCCceEEEeeecCCCCCCCCCccccccccCCCCCChhhhhhhhcHHHHHHHHHHHHhCCCCCCCCCCceee
Q 029516 11 HRAFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTP 90 (192)
Q Consensus 11 h~av~v~i~~~~~~lLL~~R~~~k~~~pg~W~~p~gG~ve~gEs~~~~~~~~~~~eaa~REl~EEtGl~~~~~~~~~l~~ 90 (192)
+.++.+++++.+|++||+||.... .+.|+|++| ||+++.||+ +.+|++||+.||||+.+... ..
T Consensus 4 ~~~~~~ii~~~~~~vLl~~R~~~~-~~~g~w~~P-gg~ve~ge~---------~~~~~~RE~~EE~g~~~~~~-----~~ 67 (128)
T TIGR00586 4 QQIAVGIIRNENGEIIITRRADGH-MFAKLLEFP-GGKEEGGET---------PEQAVVRELEEEIGIPQHFS-----EF 67 (128)
T ss_pred EEEEEEEEECCCCEEEEEEEeCCC-CCCCeEECC-CcccCCCCC---------HHHHHHHHHHHHHCCcceee-----eE
Confidence 344555566778899999997654 578999999 999999999 79999999999999986521 22
Q ss_pred eeEEEEEccCCCCcceeEEEEEEEEeeCCccCCCccccccEEEecHHHHHHH
Q 029516 91 LGRILYKAPSDGKWGEHELDYLLFIVRDVSVNPNPDEVAEYKYVNREQLKEL 142 (192)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~Ev~~~~Wv~~~el~~~ 142 (192)
++.+.+..+. .+...++|.+..... .+.+.+..++.|++++++.++
T Consensus 68 ~~~~~h~~~~-----~~~~~~~~~~~~~~~-~~~~~~~~~~~W~~~~~l~~~ 113 (128)
T TIGR00586 68 EKLEYEFYPR-----HITLWFWLLERWEGG-PPGKEGQPEEWWVLVGLLADD 113 (128)
T ss_pred EEEEEEECCC-----cEEEEEEEEEEEcCC-CcCcccccccEEeCHHHCCcc
Confidence 4443332211 122234454443221 112345678899999999875
No 66
>cd04511 Nudix_Hydrolase_4 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, U=I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specifici
Probab=99.66 E-value=1.3e-15 Score=115.10 Aligned_cols=103 Identities=15% Similarity=0.046 Sum_probs=72.6
Q ss_pred EEEEEEEEeCCceEEEeeecCCCCCCCCCccccccccCCCCCChhhhhhhhcHHHHHHHHHHHHhCCCCCCCCCCceeee
Q 029516 12 RAFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPL 91 (192)
Q Consensus 12 ~av~v~i~~~~~~lLL~~R~~~k~~~pg~W~~p~gG~ve~gEs~~~~~~~~~~~eaa~REl~EEtGl~~~~~~~~~l~~~ 91 (192)
.++++++++. +++||.+|.... .+|.|++| ||++++||+ +.+||+||++||||+++... ..+
T Consensus 14 ~~v~~ii~~~-~~vLL~kr~~~~--~~g~w~lP-gG~ve~gE~---------~~~a~~REl~EEtGl~~~~~-----~~~ 75 (130)
T cd04511 14 IIVGCVPEWE-GKVLLCRRAIEP--RHGFWTLP-AGFMENGET---------TEQGALRETWEEAGARVEID-----GLY 75 (130)
T ss_pred EEEEEEEecC-CEEEEEEecCCC--CCCeEECC-cccccCCCC---------HHHHHHHHHHHHhCCEEEee-----eEE
Confidence 3556666654 799999987542 57899999 999999999 89999999999999987521 223
Q ss_pred eEEEEEccCCCCcceeEEEEEEEEeeC-CccCCCccccccEEEecHHHHH
Q 029516 92 GRILYKAPSDGKWGEHELDYLLFIVRD-VSVNPNPDEVAEYKYVNREQLK 140 (192)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~~f~~~~~-~~~~~~~~Ev~~~~Wv~~~el~ 140 (192)
+.+ ..+. .+.+.++|.+... ..+. ...|..+++|+++++|.
T Consensus 76 ~~~--~~~~-----~~~~~~~f~~~~~~~~~~-~~~e~~~~~~~~~~~l~ 117 (130)
T cd04511 76 AVY--SVPH-----ISQVYMFYRARLLDLDFA-PGPESLEVRLFTEEEIP 117 (130)
T ss_pred EEE--ecCC-----ceEEEEEEEEEEcCCccc-CCcchhceEEECHHHCC
Confidence 322 2221 1334555666543 3333 33678899999999996
No 67
>COG1051 ADP-ribose pyrophosphatase [Nucleotide transport and metabolism]
Probab=99.65 E-value=1.6e-15 Score=117.67 Aligned_cols=112 Identities=21% Similarity=0.286 Sum_probs=78.5
Q ss_pred eEEEEEEEEeCCceEEEeeecCCCCCCCCCccccccccCCCCCChhhhhhhhcHHHHHHHHHHHHhCCCCCCCCCCceee
Q 029516 11 HRAFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTP 90 (192)
Q Consensus 11 h~av~v~i~~~~~~lLL~~R~~~k~~~pg~W~~p~gG~ve~gEs~~~~~~~~~~~eaa~REl~EEtGl~~~~~~~~~l~~ 90 (192)
..+|.+++... ++|||.||+.. .+.|+|.+| ||+++.||| +++||.||++|||||++..+ ..
T Consensus 10 ~~~v~~~i~~~-~~iLLvrR~~~--p~~g~WalP-GG~ve~GEt---------~eeaa~REl~EETgL~~~~~-----~~ 71 (145)
T COG1051 10 LVAVGALIVRN-GRILLVRRANE--PGAGYWALP-GGFVEIGET---------LEEAARRELKEETGLRVRVL-----EL 71 (145)
T ss_pred ceeeeEEEEeC-CEEEEEEecCC--CCCCcEeCC-CccCCCCCC---------HHHHHHHHHHHHhCCcccce-----eE
Confidence 35666666654 49999999765 367999999 999999999 89999999999999997532 33
Q ss_pred eeEEEEEccCCCCcceeEEEEEEEEee-CCccCC-CccccccEEEecHHHHHHHH
Q 029516 91 LGRILYKAPSDGKWGEHELDYLLFIVR-DVSVNP-NPDEVAEYKYVNREQLKELL 143 (192)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~f~~~~-~~~~~~-~~~Ev~~~~Wv~~~el~~~~ 143 (192)
++.+... ...... |.++++|++.. .+.... +.++.....|++.+++..+.
T Consensus 72 ~~v~~~~--~rd~r~-~~v~~~~~~~~~~g~~~~~~~~d~~~~~~~~~~~l~~~~ 123 (145)
T COG1051 72 LAVFDDP--GRDPRG-HHVSFLFFAAEPEGELLAGDGDDAAEVGWFPLDELPELP 123 (145)
T ss_pred EEEecCC--CCCCce-eEEEEEEEEEecCCCcccCChhhHhhcceecHhHccccc
Confidence 4443322 211122 45555555544 343333 33588899999999999753
No 68
>PRK11762 nudE adenosine nucleotide hydrolase NudE; Provisional
Probab=99.65 E-value=8.4e-15 Score=117.61 Aligned_cols=113 Identities=20% Similarity=0.115 Sum_probs=81.9
Q ss_pred EEEEEEEeCCceEEEeeecCCCCCCCCCccccccccCCCCCChhhhhhhhcHHHHHHHHHHHHhCCCCCCCCCCceeeee
Q 029516 13 AFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPLG 92 (192)
Q Consensus 13 av~v~i~~~~~~lLL~~R~~~k~~~pg~W~~p~gG~ve~gEs~~~~~~~~~~~eaa~REl~EEtGl~~~~~~~~~l~~~~ 92 (192)
+|.++.++.++++||+++... ...++.|++| ||++++||+ +++||+||++||||+.+.. +.+++
T Consensus 49 ~v~v~~~~~~~~vlLvrq~r~-~~~~~~~elP-aG~ve~gE~---------~~~aA~REl~EEtG~~~~~-----l~~l~ 112 (185)
T PRK11762 49 AVMIVPILDDDTLLLIREYAA-GTERYELGFP-KGLIDPGET---------PLEAANRELKEEVGFGARQ-----LTFLK 112 (185)
T ss_pred EEEEEEEeCCCEEEEEEeecC-CCCCcEEEcc-ceeCCCCCC---------HHHHHHHHHHHHHCCCCcc-----eEEEE
Confidence 566666777888888876432 2356789999 999999999 8999999999999999864 45666
Q ss_pred EEEEEccCCCCcceeEEEEEEEEee--CCccCCCccccccEEEecHHHHHHHHHhh
Q 029516 93 RILYKAPSDGKWGEHELDYLLFIVR--DVSVNPNPDEVAEYKYVNREQLKELLRKA 146 (192)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~f~~~~--~~~~~~~~~Ev~~~~Wv~~~el~~~~~~~ 146 (192)
.+.. .+ +.. ...+++|++.. ......++.|..+..|++++++.+++..+
T Consensus 113 ~~~~-~~---~~~-~~~~~~f~a~~~~~~~~~~~e~E~i~~~~~~~~e~~~~~~~g 163 (185)
T PRK11762 113 ELSL-AP---SYF-SSKMNIVLAEDLYPERLEGDEPEPLEVVRWPLADLDELLARP 163 (185)
T ss_pred EEec-CC---Ccc-CcEEEEEEEEccccccCCCCCCceeEEEEEcHHHHHHHHHcC
Confidence 6532 22 112 33456676653 11233456677789999999999999875
No 69
>cd04661 MRP_L46 Mitochondrial ribosomal protein L46 (MRP L46) is a component of the large subunit (39S) of the mammalian mitochondrial ribosome and a member of the Nudix hydrolase superfamily. MRPs are thought to be involved in the maintenance of the mitochondrial DNA. In general, members of the Nudix superfamily require a divalent cation, such as Mg2+ or Mn2+, for activity and contain the Nudix motif, a highly conserved 23-residue block (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. MRP L46 appears to contain a modified nudix motif.
Probab=99.65 E-value=9.9e-16 Score=116.53 Aligned_cols=108 Identities=18% Similarity=0.187 Sum_probs=71.9
Q ss_pred CceEEEeeecCCCCCCCCCccccccccCCCCCChhhhhhhhcHHHHHHHHHHHHhCCCCCCCCCCceeeeeEEEEEccCC
Q 029516 22 KYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPLGRILYKAPSD 101 (192)
Q Consensus 22 ~~~lLL~~R~~~k~~~pg~W~~p~gG~ve~gEs~~~~~~~~~~~eaa~REl~EEtGl~~~~~~~~~l~~~~~~~~~~~~~ 101 (192)
++++||.||+... .|.|++| ||++++||| +.+||+||+.||||+.+... .-...+++.+.|..+..
T Consensus 12 ~~~~Llvk~~~~~---~g~W~fP-gG~ve~gEt---------~~eaa~REl~EEtGl~v~~~-~i~~~~~~~~~~~~~~~ 77 (132)
T cd04661 12 DTLVLLVQQKVGS---QNHWILP-QGKREEGET---------LRQTAERTLKELCGNNLKAK-FYGNAPVGFYKYKYPKA 77 (132)
T ss_pred CcEEEEEEeecCC---CCeeECC-cccccCCCC---------HHHHHHHHHHHhhCCCceEE-EEEecCcEEEEEecCcc
Confidence 4679998886432 5899999 999999999 89999999999999986521 00001233344443321
Q ss_pred CC--cceeEEEEEEEEee-CCccCCCccccccEEEecHHHHHHHHH
Q 029516 102 GK--WGEHELDYLLFIVR-DVSVNPNPDEVAEYKYVNREQLKELLR 144 (192)
Q Consensus 102 ~~--~~~~~~~~~f~~~~-~~~~~~~~~Ev~~~~Wv~~~el~~~~~ 144 (192)
.. -..+...++|.+.. ++.+.++ +|+.+++|+++++|.+++.
T Consensus 78 ~~~~~~~~~~~~~f~~~~~~g~~~~~-~e~~~~~W~~~~el~~~l~ 122 (132)
T cd04661 78 VRNEGIVGAKVFFFKARYMSGQFELS-QNQVDFKWLAKEELQKYLN 122 (132)
T ss_pred cccccCcccEEEEEEEEEecCccccC-CCcceeEecCHHHHHhhcC
Confidence 10 01123455666653 4444433 7899999999999998754
No 70
>PRK05379 bifunctional nicotinamide mononucleotide adenylyltransferase/ADP-ribose pyrophosphatase; Provisional
Probab=99.64 E-value=6.9e-15 Score=128.57 Aligned_cols=133 Identities=12% Similarity=0.136 Sum_probs=85.4
Q ss_pred eEEEEEEEEeCCceEEEeeecCCCCCCCCCccccccccCCCCCChhhhhhhhcHHHHHHHHHHHHhCCCCCCCCCCceee
Q 029516 11 HRAFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTP 90 (192)
Q Consensus 11 h~av~v~i~~~~~~lLL~~R~~~k~~~pg~W~~p~gG~ve~gEs~~~~~~~~~~~eaa~REl~EEtGl~~~~~~~~~l~~ 90 (192)
..++.++|++ +|+|||++|+... .+|.|.+| ||++++||| +++||+||++|||||++....+. ...
T Consensus 203 ~vtv~avv~~-~g~VLLvrR~~~p--~~g~W~lP-GG~ve~gEt---------~~~Aa~REl~EETGl~v~~~~l~-~~~ 268 (340)
T PRK05379 203 FVTVDAVVVQ-SGHVLLVRRRAEP--GKGLWALP-GGFLEQDET---------LLDACLRELREETGLKLPEPVLR-GSI 268 (340)
T ss_pred ceEEEEEEEE-CCEEEEEEecCCC--CCCeEECC-cccCCCCCC---------HHHHHHHHHHHHHCCcccccccc-eee
Confidence 3566666664 6799999997543 47999999 999999999 89999999999999987532210 001
Q ss_pred eeEEEEEccCCCCcceeEEEEEEEEeeC-Cc-c-CCCccccccEEEecHHHHHHHHHhhcCCCCCcccChhHHHHHHHHH
Q 029516 91 LGRILYKAPSDGKWGEHELDYLLFIVRD-VS-V-NPNPDEVAEYKYVNREQLKELLRKADAGEEGLKLSPWFRLVVDNFL 167 (192)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~f~~~~~-~~-~-~~~~~Ev~~~~Wv~~~el~~~~~~~~~~~~~~~~~p~~~~~~~~~l 167 (192)
.....|..+.... ..+.+.++|.+... .. . ....+|+.+++|++++++..+-. .+......+++.|+
T Consensus 269 ~~~~~f~~p~r~~-~~~~i~~~f~~~~~~~~~~~~~~~de~~~~~W~~~~el~~~~~---------~~~~dh~~ii~~~~ 338 (340)
T PRK05379 269 RDQQVFDHPGRSL-RGRTITHAFLFEFPAGELPRVKGGDDADKARWVPLAELLAMRD---------RMFEDHFQIITHFL 338 (340)
T ss_pred eeeEEEcCCCCCC-CCcEEEEEEEEEecCCccCccCCCCceeeEEEEEHHHhhhhhh---------hhhhHHHHHHHHHh
Confidence 1112233232111 11445555655432 21 1 22447899999999999987521 24455666677665
No 71
>cd04686 Nudix_Hydrolase_27 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.64 E-value=6.7e-15 Score=111.66 Aligned_cols=112 Identities=15% Similarity=0.085 Sum_probs=71.9
Q ss_pred EEEEEEEeCCceEEEeeecCCCCCCCCCccccccccCCCCCChhhhhhhhcHHHHHHHHHHHHhCCCCCCCCCCceeeee
Q 029516 13 AFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPLG 92 (192)
Q Consensus 13 av~v~i~~~~~~lLL~~R~~~k~~~pg~W~~p~gG~ve~gEs~~~~~~~~~~~eaa~REl~EEtGl~~~~~~~~~l~~~~ 92 (192)
+|.++|++. |+|||++|.. .+.|.+| ||++++||+ +.+||+||++||||+.+... ...++
T Consensus 2 ~~~~ii~~~-~~vLLv~~~~-----~~~w~lP-gG~ve~gEt---------~~~aa~REl~EEtGl~~~~~----~~~l~ 61 (131)
T cd04686 2 AVRAIILQG-DKILLLYTKR-----YGDYKFP-GGGVEKGED---------HIEGLIRELQEETGATNIRV----IEKFG 61 (131)
T ss_pred cEEEEEEEC-CEEEEEEEcC-----CCcEECc-cccCCCCCC---------HHHHHHHHHHHHHCCccccc----ceEEE
Confidence 567777764 7899988753 2579999 999999999 89999999999999986321 12344
Q ss_pred EEEEEcc--CCCCcceeEEEEEEEEeeCC---ccCCCcccc---ccEEEecHHHHHHHHH
Q 029516 93 RILYKAP--SDGKWGEHELDYLLFIVRDV---SVNPNPDEV---AEYKYVNREQLKELLR 144 (192)
Q Consensus 93 ~~~~~~~--~~~~~~~~~~~~~f~~~~~~---~~~~~~~Ev---~~~~Wv~~~el~~~~~ 144 (192)
.+....+ ..+....+.+.++|.+.... ....++.|. ..+.|++++++.+-..
T Consensus 62 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~W~~~~ea~~~~~ 121 (131)
T cd04686 62 TYTERRPWRKPDADIFHMISYYYLCEVDAELGAQQLEDYEAELGMKPIWINIHEAIEHNE 121 (131)
T ss_pred EEEeeccccCCCCceeEEEEEEEEEEEcCCcCCcccchhhHhcCCCcEEecHHHHHHhhH
Confidence 3321111 11111113445666665422 233333333 3589999999987543
No 72
>PLN02709 nudix hydrolase
Probab=99.63 E-value=4.3e-15 Score=122.45 Aligned_cols=117 Identities=20% Similarity=0.144 Sum_probs=81.8
Q ss_pred CcceEEEEEEEEeC------CceEEEeeecCCCCCCCCCccccccccCCCCCChhhhhhhhcHHHHHHHHHHHHhCCCCC
Q 029516 8 NLLHRAFSVFLFNS------KYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAE 81 (192)
Q Consensus 8 ~~~h~av~v~i~~~------~~~lLL~~R~~~k~~~pg~W~~p~gG~ve~gEs~~~~~~~~~~~eaa~REl~EEtGl~~~ 81 (192)
...+.||.+.++.. +..|||.+|+.....+||.|+|| ||+++++|.+ +.+||+||+.||+||...
T Consensus 30 ~~r~AAVLv~l~~~~~~~~~~~~vLl~~Rs~~l~~h~GqiafP-GG~~e~~D~~--------~~~tAlRE~~EEiGl~~~ 100 (222)
T PLN02709 30 PAKSSAVLVCLYQEQREDKNELRVILTKRSSTLSSHPGEVALP-GGKRDEEDKD--------DIATALREAREEIGLDPS 100 (222)
T ss_pred CCCccEEEEEEeeccCCCCCceEEEEEEcCCCCCCCCCCccCC-CcccCCCCCC--------HHHHHHHHHHHHHCCCch
Confidence 44566777777652 23799999998776799999999 9999998643 799999999999999876
Q ss_pred CCCCCceeeeeEEEEEccCCCCcceeEEE-EEEEEee--CCccCCCccccccEEEecHHHHHHH
Q 029516 82 DVPVDEFTPLGRILYKAPSDGKWGEHELD-YLLFIVR--DVSVNPNPDEVAEYKYVNREQLKEL 142 (192)
Q Consensus 82 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~-~~f~~~~--~~~~~~~~~Ev~~~~Wv~~~el~~~ 142 (192)
.+ ..+|.+...... .+ ..+. ++.++.. .....++++|++++.|++++.+.+.
T Consensus 101 ~v-----~vlg~L~~~~t~-sg---~~V~P~V~~~~~~~~~~~~~np~EV~~vf~vPL~~ll~~ 155 (222)
T PLN02709 101 LV-----TIISVLEPFVNK-KG---MSVAPVIGFLHDKKAFKPLPNPAEVEEIFDVPLEMFLKD 155 (222)
T ss_pred he-----EEeeecCCeECC-CC---CEEEEEEEEecCCCCccccCChhhhheeEEecHHHHhCC
Confidence 43 345544321111 11 1222 2323322 3345578899999999999999753
No 73
>TIGR00052 nudix-type nucleoside diphosphatase, YffH/AdpP family.
Probab=99.55 E-value=5.5e-14 Score=113.23 Aligned_cols=114 Identities=19% Similarity=0.171 Sum_probs=79.7
Q ss_pred EEEEEEEeCC-ceEEEeeecCCC----CCCCCCccccccccCCCCCChhhhhhhhcHHHHHHHHHHHHhCCCCCCCCCCc
Q 029516 13 AFSVFLFNSK-YELLLQQRSGTK----VTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDE 87 (192)
Q Consensus 13 av~v~i~~~~-~~lLL~~R~~~k----~~~pg~W~~p~gG~ve~gEs~~~~~~~~~~~eaa~REl~EEtGl~~~~~~~~~ 87 (192)
+|++++++.+ +++||.++-... ...+..|++| ||+++.||+ +++||+||++||||+.+..
T Consensus 46 ~v~vl~~~~~~~~vlLvrq~R~~~~~~~~~~~~lelP-aG~ve~gE~---------~~~aA~REl~EEtG~~~~~----- 110 (185)
T TIGR00052 46 AAAVLLYDPKKDTVVLIEQFRIAAYVNGEEPWLLELS-AGMVEKGES---------PEDVARREAIEEAGYQVKN----- 110 (185)
T ss_pred eEEEEEEECCCCEEEEEECceeeeeecCCcceEEEEC-cEecCCCCC---------HHHHHHHHccccccceecc-----
Confidence 5667777654 688887643211 1136789999 999999999 8999999999999999864
Q ss_pred eeeeeEEEEEccCCCCcceeEEEEEEEEeeCC-----ccCCCccccccEEEecHHHHHHHHHhh
Q 029516 88 FTPLGRILYKAPSDGKWGEHELDYLLFIVRDV-----SVNPNPDEVAEYKYVNREQLKELLRKA 146 (192)
Q Consensus 88 l~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~-----~~~~~~~Ev~~~~Wv~~~el~~~~~~~ 146 (192)
+..++.+ |..+ +.. .+.+++|++.... .....++|.....|++++++.+++.++
T Consensus 111 ~~~~~~~-~~~~---g~~-~~~~~~f~a~~~~~~~~~~~~~~~~E~ie~~~~~~~e~~~~~~~G 169 (185)
T TIGR00052 111 LRKLLSF-YSSP---GGV-TELIHLFIAEVDDNQAAGIGGGADEEEIEVLHLVFSQALQWIKEG 169 (185)
T ss_pred eEEEEEE-EcCC---CCC-cEEEEEEEEEEchhhcCCCCCCCCccceEEEEeCHHHHHHHHHcC
Confidence 3455544 3222 222 5567778776421 112234566789999999999999876
No 74
>PRK10729 nudF ADP-ribose pyrophosphatase NudF; Provisional
Probab=99.55 E-value=2.7e-13 Score=110.62 Aligned_cols=114 Identities=19% Similarity=0.198 Sum_probs=78.8
Q ss_pred EEEEEEEeCC-ceEEEee--ecCCC--CCCCCCccccccccCCCCCChhhhhhhhcHHHHHHHHHHHHhCCCCCCCCCCc
Q 029516 13 AFSVFLFNSK-YELLLQQ--RSGTK--VTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDE 87 (192)
Q Consensus 13 av~v~i~~~~-~~lLL~~--R~~~k--~~~pg~W~~p~gG~ve~gEs~~~~~~~~~~~eaa~REl~EEtGl~~~~~~~~~ 87 (192)
+|+++.++++ ++|+|.+ |..-. ...+-.|++| +|.+++||+ +++||+|||.||||+.+..
T Consensus 51 ~V~il~~~~~~~~vlLvrQyR~~~~~~~~~~~~lE~P-AG~vd~gE~---------p~~aA~REL~EETGy~a~~----- 115 (202)
T PRK10729 51 AAVLLPFDPVRDEVVLIEQIRIAAYDTSETPWLLEMV-AGMIEEGES---------VEDVARREAIEEAGLIVGR----- 115 (202)
T ss_pred eEEEEEEECCCCEEEEEEeeecccccCCCCCeEEEcc-ceEcCCCCC---------HHHHHHHHHHHHhCceeeE-----
Confidence 5667767764 6887765 32210 0023579999 999999999 8999999999999999763
Q ss_pred eeeeeEEEEEccCCCCcceeEEEEEEEEeeCC----c--cCCCccccccEEEecHHHHHHHHHhh
Q 029516 88 FTPLGRILYKAPSDGKWGEHELDYLLFIVRDV----S--VNPNPDEVAEYKYVNREQLKELLRKA 146 (192)
Q Consensus 88 l~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~----~--~~~~~~Ev~~~~Wv~~~el~~~~~~~ 146 (192)
+.+++.+ |..+ +.. .+.+++|++..+. . ...+++|..++.|++++++.+++.++
T Consensus 116 ~~~l~~~-~~sp---g~~-~e~~~~fla~~~~~~~~~~~~~~de~E~i~v~~~~~~e~~~~~~~G 175 (202)
T PRK10729 116 TKPVLSY-LASP---GGT-SERSSIMVGEVDATTASGIHGLADENEDIRVHVVSREQAYQWVEEG 175 (202)
T ss_pred EEEEEEE-EcCC---CcC-ceEEEEEEEEEcchhcccCCCCCCCCCceEEEEEcHHHHHHHHHcC
Confidence 4555544 3322 222 4556777776311 1 23455677789999999999999875
No 75
>PRK08999 hypothetical protein; Provisional
Probab=99.55 E-value=1e-13 Score=119.16 Aligned_cols=110 Identities=19% Similarity=0.160 Sum_probs=75.9
Q ss_pred eEEEEEEEEeCCceEEEeeecCCCCCCCCCccccccccCCCCCChhhhhhhhcHHHHHHHHHHHHhCCCCCCCCCCceee
Q 029516 11 HRAFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTP 90 (192)
Q Consensus 11 h~av~v~i~~~~~~lLL~~R~~~k~~~pg~W~~p~gG~ve~gEs~~~~~~~~~~~eaa~REl~EEtGl~~~~~~~~~l~~ 90 (192)
+..+.++|++.+|++||+||..+. .++|+|++| ||+++.||+ +.+||.||++||||+.+... ..
T Consensus 5 ~~~~~~vi~~~~~~vLL~kR~~~~-~~~g~w~~P-gG~ve~gE~---------~~~aa~RE~~EE~Gl~~~~~-----~~ 68 (312)
T PRK08999 5 IHVAAGVIRDADGRILLARRPEGK-HQGGLWEFP-GGKVEPGET---------VEQALARELQEELGIEVTAA-----RP 68 (312)
T ss_pred eEEEEEEEECCCCeEEEEEecCCC-CCCCeEECC-ccCCCCCCC---------HHHHHHHHHHHHhCCceecc-----ee
Confidence 344555667777899999997654 589999999 999999999 79999999999999987532 23
Q ss_pred eeEEEEEccCCCCcceeEEEEEEEEeeCCccCCCccccccEEEecHHHHHHH
Q 029516 91 LGRILYKAPSDGKWGEHELDYLLFIVRDVSVNPNPDEVAEYKYVNREQLKEL 142 (192)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~Ev~~~~Wv~~~el~~~ 142 (192)
++.+.+..+. . +...++|.+.... ..++..|..+++|++++++.++
T Consensus 69 l~~~~h~~~~-~----~~~i~~y~~~~~~-~~~~~~e~~~~~Wv~~~el~~~ 114 (312)
T PRK08999 69 LITVRHDYPD-K----RVRLDVRRVTAWQ-GEPHGREGQPLAWVAPDELAVY 114 (312)
T ss_pred EEEEEEEcCC-C----eEEEEEEEEEEec-CcccCccCCccEEecHHHcccC
Confidence 4444333221 1 1223445443221 1234457788999999998863
No 76
>COG2816 NPY1 NTP pyrophosphohydrolases containing a Zn-finger, probably nucleic-acid-binding [DNA replication, recombination, and repair]
Probab=99.52 E-value=3.1e-14 Score=120.15 Aligned_cols=132 Identities=16% Similarity=0.299 Sum_probs=91.4
Q ss_pred EEEEEEEEeCCceEEEeeecCCCCCCCCCccccccccCCCCCChhhhhhhhcHHHHHHHHHHHHhCCCCCCCCCCceeee
Q 029516 12 RAFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPL 91 (192)
Q Consensus 12 ~av~v~i~~~~~~lLL~~R~~~k~~~pg~W~~p~gG~ve~gEs~~~~~~~~~~~eaa~REl~EEtGl~~~~~~~~~l~~~ 91 (192)
.+|.+++.+. +++||.++... +||+++.. +|.|++||| +++|+.||++||+||.+.. +.++
T Consensus 145 P~vIv~v~~~-~~ilLa~~~~h---~~g~yS~L-AGFVE~GET---------lE~AV~REv~EE~Gi~V~~-----vrY~ 205 (279)
T COG2816 145 PCVIVAVIRG-DEILLARHPRH---FPGMYSLL-AGFVEPGET---------LEQAVAREVFEEVGIKVKN-----VRYV 205 (279)
T ss_pred CeEEEEEecC-CceeecCCCCC---CCcceeee-eecccCCcc---------HHHHHHHHHHHhhCeEEee-----eeEE
Confidence 3555555554 45788776543 48999998 999999999 9999999999999999874 3566
Q ss_pred eEEEEEccCCCCcceeEEEEEEEEee-CCccCCCccccccEEEecHHHHHHHHHhhcCCCCCcccChhHHHHHHHHHHHH
Q 029516 92 GRILYKAPSDGKWGEHELDYLLFIVR-DVSVNPNPDEVAEYKYVNREQLKELLRKADAGEEGLKLSPWFRLVVDNFLFKW 170 (192)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~~f~~~~-~~~~~~~~~Ev~~~~Wv~~~el~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~ 170 (192)
++-.+..|.. ++--|.+.. .++++++..|+.+++|++.+|+..++..... .....+.|.+..+.++..+.|
T Consensus 206 ~SQPWPfP~S-------LMigf~aey~sgeI~~d~~Eleda~WFs~~evl~~L~~~~~-~~~~li~~~~~~ia~~~~~~~ 277 (279)
T COG2816 206 GSQPWPFPHS-------LMLGFMAEYDSGEITPDEGELEDARWFSRDEVLPALPPDGT-IARRLIEPTLAAIARELIKAW 277 (279)
T ss_pred eccCCCCchh-------hhhhheeeeccccccCCcchhhhccccCHhHHhhhcCCCCC-cccccccchHHHHHHHHHhhh
Confidence 6655554432 222244443 5678999999999999999997776654200 013345555666666665555
No 77
>cd04662 Nudix_Hydrolase_5 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate s
Probab=99.46 E-value=1.3e-12 Score=99.15 Aligned_cols=59 Identities=22% Similarity=0.345 Sum_probs=45.6
Q ss_pred EEEEEEEe--C-CceEEEeeecCC--CCCCCCCccccccccCCCCCChhhhhhhhcHHHHHHHHHHHHhCCCCC
Q 029516 13 AFSVFLFN--S-KYELLLQQRSGT--KVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAE 81 (192)
Q Consensus 13 av~v~i~~--~-~~~lLL~~R~~~--k~~~pg~W~~p~gG~ve~gEs~~~~~~~~~~~eaa~REl~EEtGl~~~ 81 (192)
++++++++ . ..+|||++|... .....+.|++| ||+++.||+ +.+||+||++||||+++.
T Consensus 2 ~~g~v~~~~~~~~~~vlL~~~~~~~~~~~~~~~W~lP-gG~ie~~E~---------~~~aA~REl~EEtGl~~~ 65 (126)
T cd04662 2 SAGILLYRFRDGRIEVLLVHPGGPFWANKDLGAWSIP-KGEYTEGED---------PLLAAKREFSEETGFCVD 65 (126)
T ss_pred eEEEEEEEEcCCcEEEEEEEccCccccCCCCCEEECC-cccCCCCcC---------HHHHHHHHHHHHhCCcce
Confidence 45566654 2 236898876432 12356899999 999999999 899999999999999875
No 78
>KOG3084 consensus NADH pyrophosphatase I of the Nudix family of hydrolases [Replication, recombination and repair]
Probab=99.46 E-value=5.5e-14 Score=119.64 Aligned_cols=140 Identities=19% Similarity=0.250 Sum_probs=96.5
Q ss_pred EEEEEEEEeCCceEEEeeecCCCCCCCCCccccccccCCCCCChhhhhhhhcHHHHHHHHHHHHhCCCCCCCCCCceeee
Q 029516 12 RAFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPL 91 (192)
Q Consensus 12 ~av~v~i~~~~~~lLL~~R~~~k~~~pg~W~~p~gG~ve~gEs~~~~~~~~~~~eaa~REl~EEtGl~~~~~~~~~l~~~ 91 (192)
.+|...|++++|+.+|..|+. .+-||+|+.+ +|.+|+||| ++|||+||++||+|++++.+. +.
T Consensus 188 PvVIm~li~~d~~~~LL~R~~--r~~~gl~t~l-AGFlEpGES---------~eeav~REtwEEtGi~V~~I~-----~~ 250 (345)
T KOG3084|consen 188 PVVIMLLIDHDGKHALLGRQK--RYPPGLWTCL-AGFLEPGES---------IEEAVRRETWEETGIEVEVIS-----YV 250 (345)
T ss_pred CeEEEEEEcCCCCEeeeeccc--CCCCchhhhh-hccCCcccc---------HHHHHHHHHHHHhCceeeeEe-----ee
Confidence 356667788998777767743 3468999999 899999999 999999999999999987532 12
Q ss_pred eEEEEEccCCCCcceeEEE--EEEEEeeCCccCCCcc-ccccEEEecHHHHHHHHHhhcCC----CCCcccChhHHHHHH
Q 029516 92 GRILYKAPSDGKWGEHELD--YLLFIVRDVSVNPNPD-EVAEYKYVNREQLKELLRKADAG----EEGLKLSPWFRLVVD 164 (192)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~--~~f~~~~~~~~~~~~~-Ev~~~~Wv~~~el~~~~~~~~~~----~~~~~~~p~~~~~~~ 164 (192)
....+. . +. ..++ ++-++..++.++.+.+ |..+.+|++.+|+.+.+...+-. +.-..+.|.-..+.+
T Consensus 251 asQPWP--~---~p-~SLMIgc~ala~~~~~I~vd~dlEleDaqwF~r~ev~~aL~~kg~~Rv~~~~a~i~~P~~~aIA~ 324 (345)
T KOG3084|consen 251 ASQPWP--L---MP-QSLMIGCLALAKLNGKISVDKDLELEDAQWFDREEVKSALTTKGLVRVQIEKALILIPPPFAIAH 324 (345)
T ss_pred ecCCCC--C---Cc-hHHHHHHHHHHhhCCccccCcchhhhhcccccHHHHHHHHHhcCCccccccCcceecCChhHHHH
Confidence 111111 0 00 0010 0111223567777777 99999999999999988742110 011467888889999
Q ss_pred HHHHHHHHHh
Q 029516 165 NFLFKWWDHL 174 (192)
Q Consensus 165 ~~l~~~~~~~ 174 (192)
+++..|.+..
T Consensus 325 qLI~~~~~~~ 334 (345)
T KOG3084|consen 325 QLILHWVGFV 334 (345)
T ss_pred HHHHHHHccc
Confidence 9999987654
No 79
>PRK15009 GDP-mannose pyrophosphatase NudK; Provisional
Probab=99.45 E-value=4.7e-12 Score=102.53 Aligned_cols=114 Identities=14% Similarity=0.111 Sum_probs=78.2
Q ss_pred EEEEEEEEeC-CceEEEeeecCCCC-----CCCCCccccccccCCCCCChhhhhhhhcHHHHHHHHHHHHhCCCCCCCCC
Q 029516 12 RAFSVFLFNS-KYELLLQQRSGTKV-----TFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPV 85 (192)
Q Consensus 12 ~av~v~i~~~-~~~lLL~~R~~~k~-----~~pg~W~~p~gG~ve~gEs~~~~~~~~~~~eaa~REl~EEtGl~~~~~~~ 85 (192)
.+|++++++. +++++|.+.-.... ..+-.|++| +|.++.+ + +++||+|||.||||+.+..
T Consensus 46 ~~v~Vl~~~~~~~~vvLvrQyR~~v~~~~~~~~~~lElP-AG~vd~~-~---------p~~aA~REL~EETGy~a~~--- 111 (191)
T PRK15009 46 NGATILLYNAKKKTVVLIRQFRVATWVNGNESGQLIETC-AGLLDND-E---------PEVCIRKEAIEETGYEVGE--- 111 (191)
T ss_pred CEEEEEEEECCCCEEEEEEcccccccccCCCCceEEEEe-ccccCCC-C---------HHHHHHHHHHHhhCCccce---
Confidence 3566777776 56888865322111 023469999 8999964 7 6999999999999999864
Q ss_pred CceeeeeEEEEEccCCCCcceeEEEEEEEEeeC--C---ccCCCccccccEEEecHHHHHHHHHhh
Q 029516 86 DEFTPLGRILYKAPSDGKWGEHELDYLLFIVRD--V---SVNPNPDEVAEYKYVNREQLKELLRKA 146 (192)
Q Consensus 86 ~~l~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~--~---~~~~~~~Ev~~~~Wv~~~el~~~~~~~ 146 (192)
+.+++.+ |..+ +.. .+.+|+|++... . ....+++|..++.|+|++++.+++.++
T Consensus 112 --~~~l~~~-~~sp---G~s-~e~~~lf~a~~~~~~~~~~~~~de~E~iev~~~~~~e~~~~i~~G 170 (191)
T PRK15009 112 --VRKLFEL-YMSP---GGV-TELIHFFIAEYSDSQRANAGGGVEDEDIEVLELPFSQALEMIKTG 170 (191)
T ss_pred --EEEeeEE-EcCC---ccc-CcEEEEEEEEECchhcccCCCCCCCceEEEEEEcHHHHHHHHHcC
Confidence 4556554 3332 333 456788877642 1 112356788899999999999999875
No 80
>TIGR02705 nudix_YtkD nucleoside triphosphatase YtkD. The functional assignment to the proteins of this family is contentious. Reference challenges the findings of reference, both in interpretation and in enzyme assay results. This protein belongs to the nudix family and shares some sequence identity with E. coli MutT but appears not to be functionally interchangeable with it.
Probab=99.44 E-value=3.2e-12 Score=100.42 Aligned_cols=114 Identities=16% Similarity=0.164 Sum_probs=77.5
Q ss_pred EEEEEEEeCCceEEEeeecCCCCCCCCCccccccccCCCCCChhhhhhhhcHHHHHHHHHHHHhCCCCCCCCCCceeeee
Q 029516 13 AFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPLG 92 (192)
Q Consensus 13 av~v~i~~~~~~lLL~~R~~~k~~~pg~W~~p~gG~ve~gEs~~~~~~~~~~~eaa~REl~EEtGl~~~~~~~~~l~~~~ 92 (192)
+|.++... ++++||.++.. ..|++| ||++++||| +.+||+||+.||||+.+. .+.+++
T Consensus 26 ~V~ii~~~-~~~~LL~~~~~------~~~elP-gG~vE~gEt---------~~eaA~REl~EETG~~~~-----~~~~lg 83 (156)
T TIGR02705 26 HVLVIPRY-KDQWLLTEHKR------RGLEFP-GGKVEPGET---------SKEAAIREVMEETGAIVK-----ELHYIG 83 (156)
T ss_pred EEEEEEEE-CCEEEEEEEcC------CcEECC-ceecCCCCC---------HHHHHHHHHHHHhCcEee-----eeEEEE
Confidence 34444444 45788876542 359999 999999999 899999999999999876 356777
Q ss_pred EEEEEccCCCCcceeEEEEEEEEeeCCccCCCccccccEE-EecHHHHHHHHHhhcCCCCCcccChhHHH
Q 029516 93 RILYKAPSDGKWGEHELDYLLFIVRDVSVNPNPDEVAEYK-YVNREQLKELLRKADAGEEGLKLSPWFRL 161 (192)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~Ev~~~~-Wv~~~el~~~~~~~~~~~~~~~~~p~~~~ 161 (192)
.+... + + . .....++|++... ..... +|..+.. +++++++.+++..+ ..|+..+.+
T Consensus 84 ~~~~~-~-~-~--~~~~~~vf~A~~~-~~~~~-~e~~E~~~~~~~~~~~~~~~~g------~~~s~~~~d 140 (156)
T TIGR02705 84 QYEVE-G-E-S--TDFVKDVYFAEVS-ALESK-DDYLETKGPVLLQEIPDIIKAD------PRFSFIMKD 140 (156)
T ss_pred EEEec-C-C-C--cEEEEEEEEEEEe-ccccC-CCceeeEeEEEHHHHHHHHhcC------CcccEEEch
Confidence 65332 1 1 1 2455677777654 22223 5545555 89999999999875 356665553
No 81
>cd04665 Nudix_Hydrolase_8 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate s
Probab=99.44 E-value=1.8e-12 Score=97.26 Aligned_cols=101 Identities=18% Similarity=0.121 Sum_probs=69.7
Q ss_pred EEEEEEEeCCceEEEeeecCCCCCCCCCccccccccCCCCCChhhhhhhhcHHHHHHHHHHHHhCCCCCCCCCCceeeee
Q 029516 13 AFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPLG 92 (192)
Q Consensus 13 av~v~i~~~~~~lLL~~R~~~k~~~pg~W~~p~gG~ve~gEs~~~~~~~~~~~eaa~REl~EEtGl~~~~~~~~~l~~~~ 92 (192)
+|.+++++ ++++||.++. .+.|++| ||++++||+ +.+||+||+.||+|+.+.. +.+++
T Consensus 2 ~v~vi~~~-~~~vLl~~~~------~~~w~lP-gG~ve~gE~---------~~~aa~REl~EE~G~~~~~-----~~~l~ 59 (118)
T cd04665 2 SVLVICFY-DDGLLLVRHK------DRGWEFP-GGHVEPGET---------IEEAARREVWEETGAELGS-----LTLVG 59 (118)
T ss_pred EEEEEEEE-CCEEEEEEeC------CCEEECC-ccccCCCCC---------HHHHHHHHHHHHHCCccCc-----eEEEE
Confidence 34555555 4788888764 2579999 999999999 8999999999999999853 45677
Q ss_pred EEEEEccCCCCcceeEEEEEEEEee-CCccCCCccccccEEEecHHHHH
Q 029516 93 RILYKAPSDGKWGEHELDYLLFIVR-DVSVNPNPDEVAEYKYVNREQLK 140 (192)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~f~~~~-~~~~~~~~~Ev~~~~Wv~~~el~ 140 (192)
.+.+... .. ....++|.+.. .........|+....|++.+...
T Consensus 60 ~~~~~~~--~~---~~~~~~y~a~~~~~~~~~~~~E~~~~~~~~~~~~~ 103 (118)
T cd04665 60 YYQVDLF--ES---GFETLVYPAVSAQLEEKASYLETDGPVLFKNEPEE 103 (118)
T ss_pred EEEecCC--CC---cEEEEEEEEEEEecccccccccccCcEEeccCCcc
Confidence 6544321 11 23345566554 33333344899999999876553
No 82
>cd04674 Nudix_Hydrolase_16 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.35 E-value=2.1e-11 Score=91.60 Aligned_cols=55 Identities=20% Similarity=0.143 Sum_probs=42.6
Q ss_pred EEEEEEeCCceEEEeeecCCCCCCCCCccccccccCCCCCChhhhhhhhcHHHHHHHHHHHHhCCCCC
Q 029516 14 FSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAE 81 (192)
Q Consensus 14 v~v~i~~~~~~lLL~~R~~~k~~~pg~W~~p~gG~ve~gEs~~~~~~~~~~~eaa~REl~EEtGl~~~ 81 (192)
+++++...++ +||.+|+.. ..+|.|.+| ||++++||+ +.+||+||+.||||+.+.
T Consensus 7 av~vl~~~~~-~lL~~r~~~--~~~~~w~lP-gG~ve~~E~---------~~~aa~REl~EE~g~~~~ 61 (118)
T cd04674 7 VVALLPVDDG-LLVIRRGIE--PGRGKLALP-GGFIELGET---------WQDAVARELLEETGVAVD 61 (118)
T ss_pred EEEEEEECCC-EEEEEeecC--CCCCeEECC-ceecCCCCC---------HHHHHHHHHHHHHCCccc
Confidence 3344444445 555566543 357999999 999999999 899999999999999975
No 83
>cd03670 ADPRase_NUDT9 ADP-ribose pyrophosphatase (ADPRase) catalyzes the hydrolysis of ADP-ribose to AMP and ribose-5-P. Like other members of the Nudix hydrolase superfamily of enzymes, it is thought to require a divalent cation, such as Mg2+, for its activity. It also contains a 23-residue Nudix motif (GX5EX7REUXEEXGU, where U = I, L or V) which functions as a metal binding site/catalytic site. In addition to the Nudix motif, there are additional conserved amino acid residues, distal from the signature sequence, that correlate with substrate specificity. In humans, there are four distinct ADPRase activities, three putative cytosolic (ADPRase-I, -II, and -Mn) and a single mitochondrial enzyme (ADPRase-m). ADPRase-m is also known as NUDT9. It can be distinugished from the cytosolic ADPRase by a N-terminal target sequence unique to mitochondrial ADPRase. NUDT9 functions as a monomer.
Probab=99.32 E-value=2.1e-11 Score=98.30 Aligned_cols=103 Identities=14% Similarity=0.190 Sum_probs=63.6
Q ss_pred eEEEeeecCCCCCCCCCccccccccCCCCCChhhhhhhhcHHHHHHHHHHHHhCCCCCCCCCCc---------eeeeeEE
Q 029516 24 ELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDE---------FTPLGRI 94 (192)
Q Consensus 24 ~lLL~~R~~~k~~~pg~W~~p~gG~ve~gEs~~~~~~~~~~~eaa~REl~EEtGl~~~~~~~~~---------l~~~~~~ 94 (192)
++|+.+|+. +|.|.+| ||+++++|+ +.+||+||+.||||+.++.+..+. +...+..
T Consensus 50 ~vLl~~r~~-----~g~walP-GG~v~~~E~---------~~~aa~Rel~EEt~l~l~~~~~~~~~l~~l~~~~~~~~~~ 114 (186)
T cd03670 50 QFVAIKRPD-----SGEWAIP-GGMVDPGEK---------ISATLKREFGEEALNSLQKSDEEKEEIKKLVELFSKDGVE 114 (186)
T ss_pred EEEEEEeCC-----CCcCcCC-eeeccCCCC---------HHHHHHHHHHHHHcccccccchhhhhhcchhhhhcccccE
Confidence 688888853 4899999 999999999 899999999999987654332211 1000111
Q ss_pred EEEc----cC--CCCcceeEEEEEEEEeeC---CccCC-CccccccEEEecHHHHHHH
Q 029516 95 LYKA----PS--DGKWGEHELDYLLFIVRD---VSVNP-NPDEVAEYKYVNREQLKEL 142 (192)
Q Consensus 95 ~~~~----~~--~~~~~~~~~~~~f~~~~~---~~~~~-~~~Ev~~~~Wv~~~el~~~ 142 (192)
.|.. +. +++|. +.+.|.|..... ....+ ..++..+++|++++++..+
T Consensus 115 vy~~~~~dpr~td~~w~-~Tva~~f~~~~~~~~~~~~~~a~dda~~a~W~~v~~l~~L 171 (186)
T cd03670 115 VYKGYVDDPRNTDNAWM-ETVAVNFHDEDGNDVENLPLEAGDDAGSVRWQDIDSKLPL 171 (186)
T ss_pred EEeccccCCCCCCcceE-EEEEEEEEecCcccccccccCCCCchheeEEEEccccccc
Confidence 2321 11 12343 334444444211 11222 3468999999999998744
No 84
>cd04663 Nudix_Hydrolase_6 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belong to this superfamily requires a divalent cation, such as Mg2+ or Mn2+ for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, U=I, L or V) which functions as metal binding and catalytic site. Substrates of nudix hydrolase include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specificity are
Probab=99.29 E-value=3.4e-11 Score=91.44 Aligned_cols=51 Identities=22% Similarity=0.143 Sum_probs=40.0
Q ss_pred EEEEEEeCCc--eEEEeeecCCCCCCCCCccccccccCCCCCChhhhhhhhcHHHHHHHHHHHHhCCCC
Q 029516 14 FSVFLFNSKY--ELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICA 80 (192)
Q Consensus 14 v~v~i~~~~~--~lLL~~R~~~k~~~pg~W~~p~gG~ve~gEs~~~~~~~~~~~eaa~REl~EEtGl~~ 80 (192)
|.+++.+.++ +||+.+.. . +.|.+| ||++++||+ +.+||+||+.||||+..
T Consensus 3 ~~~~~~~~~~~~~ll~~r~~-~-----~~~~lP-gG~ve~~E~---------~~~aa~Rel~EEtGl~~ 55 (126)
T cd04663 3 CPAVLRRNGEVLELLVFEHP-L-----AGFQIV-KGTVEPGET---------PEAAALRELQEESGLPS 55 (126)
T ss_pred EEEEEEeCCceEEEEEEEcC-C-----CcEECC-CccCCCCCC---------HHHHHHHHHHHHHCCee
Confidence 4555655554 56665543 2 359999 999999999 89999999999999986
No 85
>COG0494 MutT NTP pyrophosphohydrolases including oxidative damage repair enzymes [DNA replication, recombination, and repair / General function prediction only]
Probab=99.25 E-value=7.4e-11 Score=87.40 Aligned_cols=115 Identities=22% Similarity=0.278 Sum_probs=67.3
Q ss_pred EEEEEEEeCC-ceEEEeeecCCCCCCCCCccccccccCCCCCChhhhhhhhcHHH-HHHHHHHHHhCCCCCCCCCCceee
Q 029516 13 AFSVFLFNSK-YELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRN-AAQRKLLDELGICAEDVPVDEFTP 90 (192)
Q Consensus 13 av~v~i~~~~-~~lLL~~R~~~k~~~pg~W~~p~gG~ve~gEs~~~~~~~~~~~e-aa~REl~EEtGl~~~~~~~~~l~~ 90 (192)
++.+++.... +++|+++|.... +.|.+| ||+++.||+ +.+ ||+||+.||||+.+... .+..
T Consensus 13 ~~~~~~~~~~~~~vl~~~~~~~~----~~~~~P-gG~ve~~e~---------~~~~aa~RE~~EEtGl~~~~~---~~~~ 75 (161)
T COG0494 13 AVAVLVGRDGPGEVLLAQRRDDG----GLWELP-GGKVEPGEE---------LPEEAAARELEEETGLRVKDE---RLEL 75 (161)
T ss_pred eEEEEEecCCCCEEeEEEccccC----CceecC-CcccCCCCc---------hHHHHHHHHHHHHhCCeeeee---ccee
Confidence 4444444333 789999887543 699999 999999999 456 99999999999998631 1233
Q ss_pred eeEEEEEccCCCCcceeEEEEEEEEee----CCccCCC---ccccccEEEecHHHHHHHHH
Q 029516 91 LGRILYKAPSDGKWGEHELDYLLFIVR----DVSVNPN---PDEVAEYKYVNREQLKELLR 144 (192)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~f~~~~----~~~~~~~---~~Ev~~~~Wv~~~el~~~~~ 144 (192)
++.+..................+.... ....... ..|...+.|++.+++.....
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~ 136 (161)
T COG0494 76 LGEFPPSPGDGSSVGGREHRVFFVAEVDDSLAVAIEGLSAPSEELEDLEWVPLDELAALVL 136 (161)
T ss_pred eeeccCcccCcccccceEEEEEEeeeccccccccccccCCCcchhhceeeeeHHHcccccc
Confidence 433322211111000001111111111 1111111 36889999999999987654
No 86
>KOG4313 consensus Thiamine pyrophosphokinase [Nucleotide transport and metabolism]
Probab=99.24 E-value=9e-12 Score=103.00 Aligned_cols=126 Identities=21% Similarity=0.216 Sum_probs=101.1
Q ss_pred eEEEeeecCCCCCCCCCccccccccCCCCCChhhhhhhhcHHHHHHHHHHHHhCCCCCCCCCCceeeeeEEEEEccCCCC
Q 029516 24 ELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPLGRILYKAPSDGK 103 (192)
Q Consensus 24 ~lLL~~R~~~k~~~pg~W~~p~gG~ve~gEs~~~~~~~~~~~eaa~REl~EEtGl~~~~~~~~~l~~~~~~~~~~~~~~~ 103 (192)
.++++|||..|.+|||+|++.+||++..|-+ +.++|+.|..||..|..+. ...+...|.+.|-......
T Consensus 149 ~iWvprRS~TKqTWP~~lDN~vaGGl~~g~g---------I~eT~iKE~~EEAnl~~~~--~~Nlv~~G~VSy~~~esr~ 217 (306)
T KOG4313|consen 149 CIWVPRRSNTKQTWPGKLDNMVAGGLSVGFG---------IKETAIKEAAEEANLPSDL--VKNLVSAGCVSYYKFESRQ 217 (306)
T ss_pred EEEecccCCccccCcchhhhhhccccccCch---------HHHHHHHHHHHhcCCchhh--HhcceecceeEEEeeehhh
Confidence 6999999999999999999999999999999 9999999999999999842 3456777877765322222
Q ss_pred cceeEEEEEEEEee--CCccCCCccccccEEEecHHHHHHHHHhhcCCCCCcccChhHHHHHHHHH
Q 029516 104 WGEHELDYLLFIVR--DVSVNPNPDEVAEYKYVNREQLKELLRKADAGEEGLKLSPWFRLVVDNFL 167 (192)
Q Consensus 104 ~~~~~~~~~f~~~~--~~~~~~~~~Ev~~~~Wv~~~el~~~~~~~~~~~~~~~~~p~~~~~~~~~l 167 (192)
+...+..|+|-... +.-+++++.|++.+..+++.+..+.+... .|.|.+..++-+|+
T Consensus 218 ~~~pe~qYVfDL~l~~d~iP~~nDGEV~~F~Lltl~~~v~~l~~k-------~FKpncAlV~iDfl 276 (306)
T KOG4313|consen 218 GLFPETQYVFDLELPLDFIPQNNDGEVQAFELLTLKDCVERLFTK-------DFKPNCALVVIDFL 276 (306)
T ss_pred ccCccceEEEeccCchhhcCCCCCCceeeEeeecHHHHHHHHHhh-------ccCCCcceEEEEEe
Confidence 22246678887765 45567788999999999999999888764 79999888777664
No 87
>KOG3069 consensus Peroxisomal NUDIX hydrolase [Replication, recombination and repair]
Probab=99.22 E-value=5.9e-11 Score=97.59 Aligned_cols=113 Identities=20% Similarity=0.159 Sum_probs=78.3
Q ss_pred EEEEEEEEeC-Cc--eEEEeeecCCCCCCCCCccccccccCCCCCChhhhhhhhcHHHHHHHHHHHHhCCCCCCCCCCce
Q 029516 12 RAFSVFLFNS-KY--ELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEF 88 (192)
Q Consensus 12 ~av~v~i~~~-~~--~lLL~~R~~~k~~~pg~W~~p~gG~ve~gEs~~~~~~~~~~~eaa~REl~EEtGl~~~~~~~~~l 88 (192)
.+|.+.+++. +| +|||+||+.+-..++|.-.|| ||+.++.+.+ -.++|.||..||+|++.+.+.
T Consensus 44 ~aVlI~L~~~~~~~l~vLltkRSr~LrshsGev~fP-GG~~d~~D~s--------~~~tAlREt~EEIGl~~~~~~---- 110 (246)
T KOG3069|consen 44 AAVLIPLVQVGSGELSVLLTKRSRTLRSHSGEVCFP-GGRRDPHDKS--------DIQTALRETEEEIGLDPELVD---- 110 (246)
T ss_pred ccEEEEEEEcCCCceEEEEEeccccccccCCceeCC-CCcCCccccc--------hHHHHHHHHHHHhCCCHHHhh----
Confidence 4555556654 33 799999999999999999999 9999998876 579999999999999986432
Q ss_pred eeeeEEE-EEccCCCCcceeEEEEEEEEeeC---CccCCCccccccEEEecHHHHHHH
Q 029516 89 TPLGRIL-YKAPSDGKWGEHELDYLLFIVRD---VSVNPNPDEVAEYKYVNREQLKEL 142 (192)
Q Consensus 89 ~~~~~~~-~~~~~~~~~~~~~~~~~f~~~~~---~~~~~~~~Ev~~~~Wv~~~el~~~ 142 (192)
.+|... +... .++.-..+ +-+.... ....++++|+.++.||+++++..-
T Consensus 111 -~~g~l~~~~~r--~~~~v~p~--v~~l~~~~~l~~~~ln~gEv~~~F~VPL~~ll~~ 163 (246)
T KOG3069|consen 111 -VLGALPPFVLR--SGWSVFPV--VGFLSDKKILPSLRLNSGEVESAFWVPLTDLLLP 163 (246)
T ss_pred -hhhhccceeec--cCccccee--EEEEecccccccccCCchheeeeeeeeHHHHhhh
Confidence 233221 1111 12221111 1112112 456789999999999999999753
No 88
>KOG2839 consensus Diadenosine and diphosphoinositol polyphosphate phosphohydrolase [Signal transduction mechanisms]
Probab=99.18 E-value=3e-10 Score=87.12 Aligned_cols=128 Identities=20% Similarity=0.251 Sum_probs=80.5
Q ss_pred cceEEEEEEEEeCCc---eEEEeeecCCCCCCCCCccccccccCCCCCChhhhhhhhcHHHHHHHHHHHHhCCCCCCCCC
Q 029516 9 LLHRAFSVFLFNSKY---ELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPV 85 (192)
Q Consensus 9 ~~h~av~v~i~~~~~---~lLL~~R~~~k~~~pg~W~~p~gG~ve~gEs~~~~~~~~~~~eaa~REl~EEtGl~~~~~~~ 85 (192)
-++.+++|+.+..++ +|||..-+.. |-.|.+| +|+++++|+ ..+||+||+.||.|+.....
T Consensus 7 G~r~vagCi~~r~~~~~ieVLlvsSs~~----~~~wi~P-KGGwE~dE~---------~~eAA~REt~EEAGv~G~l~-- 70 (145)
T KOG2839|consen 7 GFRLVAGCICYRSDKEKIEVLLVSSSKK----PHRWIVP-KGGWEPDES---------VEEAALRETWEEAGVKGKLG-- 70 (145)
T ss_pred CcEEEEEeeeeeecCcceEEEEEecCCC----CCCccCC-CCCCCCCCC---------HHHHHHHHHHHHhCceeeee--
Confidence 356667777776554 7899875532 4579999 999999999 89999999999999987632
Q ss_pred CceeeeeEE-EEEccCCCCcceeEEEEEEEEee--CCccCCC-ccccccEEEecHHHHHHHHHhhcCCCCCcccChhHHH
Q 029516 86 DEFTPLGRI-LYKAPSDGKWGEHELDYLLFIVR--DVSVNPN-PDEVAEYKYVNREQLKELLRKADAGEEGLKLSPWFRL 161 (192)
Q Consensus 86 ~~l~~~~~~-~~~~~~~~~~~~~~~~~~f~~~~--~~~~~~~-~~Ev~~~~Wv~~~el~~~~~~~~~~~~~~~~~p~~~~ 161 (192)
..++.+ .+......... . .+.|.... ....-++ ..|....+|++++|...... ..|+..
T Consensus 71 ---~~~~g~~~~~~~~~~~~~-k--~~~~~l~v~e~le~wp~~~~~~r~r~W~~ledA~~~~~-----------~~~m~~ 133 (145)
T KOG2839|consen 71 ---RLLGGFEDFLSKKHRTKP-K--GVMYVLAVTEELEDWPESEHEFREREWLKLEDAIELCQ-----------HKWMKA 133 (145)
T ss_pred ---ccccchhhccChhhcccc-c--ceeehhhhhhhcccChhhhcccceeEEeeHHHHHHHHh-----------hHHHHH
Confidence 212222 13222211110 1 12333322 2222222 24588999999999998764 346666
Q ss_pred HHHHHHHH
Q 029516 162 VVDNFLFK 169 (192)
Q Consensus 162 ~~~~~l~~ 169 (192)
.+..++..
T Consensus 134 al~e~~~~ 141 (145)
T KOG2839|consen 134 ALEEFLQF 141 (145)
T ss_pred HHHHHHHH
Confidence 66666543
No 89
>PLN03143 nudix hydrolase; Provisional
Probab=99.17 E-value=3.7e-10 Score=96.74 Aligned_cols=116 Identities=17% Similarity=0.124 Sum_probs=71.9
Q ss_pred EEEEEEE-eCCce--EEEeeecCCCCCCCCCccccccccCCCC-CChhhhhhhhcHHHHHHHHHHHHhCCCCCCCCCCce
Q 029516 13 AFSVFLF-NSKYE--LLLQQRSGTKVTFPLVWTNTCCSHPLYR-ESELIEENALGVRNAAQRKLLDELGICAEDVPVDEF 88 (192)
Q Consensus 13 av~v~i~-~~~~~--lLL~~R~~~k~~~pg~W~~p~gG~ve~g-Es~~~~~~~~~~~eaa~REl~EEtGl~~~~~~~~~l 88 (192)
+|++++. +.+++ ++|.++.... ...-.|++| ||.+|++ |+ +.+||+||+.||||+.+... ++
T Consensus 130 aVaVL~~l~~~ge~~VlLVrQ~R~p-vg~~~lE~P-AG~lD~~~ed---------p~~aA~REL~EETG~~~~a~---~l 195 (291)
T PLN03143 130 AVAVLILLESEGETYAVLTEQVRVP-VGKFVLELP-AGMLDDDKGD---------FVGTAVREVEEETGIKLKLE---DM 195 (291)
T ss_pred eEEEEEEEeCCCCEEEEEEEeEecC-CCcEEEEec-ccccCCCCCC---------HHHHHHHHHHHHHCCccccc---eE
Confidence 5555554 54555 7776654321 123479999 9999975 78 89999999999999986421 22
Q ss_pred eeeeE--------EEEEccCCCCcceeEEEEEEEEeeCC----------c--cCCCccccccEEEecHHHHHHHHHhh
Q 029516 89 TPLGR--------ILYKAPSDGKWGEHELDYLLFIVRDV----------S--VNPNPDEVAEYKYVNREQLKELLRKA 146 (192)
Q Consensus 89 ~~~~~--------~~~~~~~~~~~~~~~~~~~f~~~~~~----------~--~~~~~~Ev~~~~Wv~~~el~~~~~~~ 146 (192)
..+.. -.|..+ +.. .+..++|.+.... . ...+.+|...+.|++++++..++..+
T Consensus 196 v~L~~~~~~~~g~~v~psp---G~~-dE~i~Lfla~~~v~~~~l~~l~~~~~~l~degE~Iev~~vpl~eiw~~~aD~ 269 (291)
T PLN03143 196 VDLTAFLDPSTGCRMFPSP---GGC-DEEISLFLYRGHVDKETIRQLQGKETGLRDHGELIKVHVVPYRELWRMTADA 269 (291)
T ss_pred EEeeeccccCcCceEEecC---Ccc-CCeEEEEEEccccchhhhcccccccCCCCCCCcEEEEEEEEHHHHHHHHHhH
Confidence 33321 123322 222 3445666654311 1 12355677889999999999887643
No 90
>cd03431 DNA_Glycosylase_C DNA glycosylase (MutY in bacteria and hMYH in humans) is responsible for repairing misread A*oxoG residues to C*G by removing the inappropriately paired adenine base from the DNA backbone. It belongs to the Nudix hydrolase superfamily and is important for the repair of various genotoxic lesions. Enzymes belonging to this superfamily requires a divalent cation, such as Mg2+ or Mn2+ for their activity. They are also recognized by a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V). However, DNA glycosylase does not seem to contain this signature motif. DNA glycosylase consists of 2 domains: the N-terminal domain contains the catalytic properties of the enzyme and the C-terminal domain affects substrate (oxoG) binding and enzymatic turnover. The C-terminal domain is highly similar to MutT, based on secondary structure and topology, despite low sequence identity. MutT sanitizes the nucleotide precursor pool by hydrolyzing oxo-dGTP to
Probab=99.11 E-value=3.8e-09 Score=77.19 Aligned_cols=100 Identities=17% Similarity=0.174 Sum_probs=64.6
Q ss_pred EEEEEEeCCceEEEeeecCCCCCCCCCccccccccCCCCCChhhhhhhhcHHHHHHHHHHHHhCCCCCCCCCCceeeeeE
Q 029516 14 FSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPLGR 93 (192)
Q Consensus 14 v~v~i~~~~~~lLL~~R~~~k~~~pg~W~~p~gG~ve~gEs~~~~~~~~~~~eaa~REl~EEtGl~~~~~~~~~l~~~~~ 93 (192)
+.++++..+|++||+||..+ ..++|+|+|| ||.++.+++ .+++..|++.+|.++.. ..++.
T Consensus 5 ~~~~ii~~~~~~ll~kR~~~-gl~~glwefP-~~~~~~~~~---------~~~~~~~~~~~~~~~~~--------~~~~~ 65 (118)
T cd03431 5 IAVVVIRNDGRVLLEKRPEK-GLLAGLWEFP-SVEWEEEAD---------GEEALLSALKKALRLSL--------EPLGT 65 (118)
T ss_pred EEEEEEecCCeEEEEECCCC-CCCCcceeCC-CccccCCcC---------HHHHHHHHHHHHhCccc--------cccee
Confidence 34444455789999999754 5689999999 889988888 68899999999887511 11333
Q ss_pred EEEEccCCCCcceeEE-EEEEEEeeCCccCCCccccccEEEecHHHHHHH
Q 029516 94 ILYKAPSDGKWGEHEL-DYLLFIVRDVSVNPNPDEVAEYKYVNREQLKEL 142 (192)
Q Consensus 94 ~~~~~~~~~~~~~~~~-~~~f~~~~~~~~~~~~~Ev~~~~Wv~~~el~~~ 142 (192)
+.+..+ ++.+ .++|.+...... .+..++.|++.+++..+
T Consensus 66 ~~H~ft------h~~~~~~~~~~~~~~~~----~~~~~~~W~~~eel~~~ 105 (118)
T cd03431 66 VKHTFT------HFRLTLHVYLARLEGDL----LAPDEGRWVPLEELDEY 105 (118)
T ss_pred EEEecC------CeEEEEEEEEEEEeCCC----cCccccEEccHHHHhhC
Confidence 333222 1111 234444332111 24567899999998864
No 91
>KOG0648 consensus Predicted NUDIX hydrolase FGF-2 and related proteins [Signal transduction mechanisms]
Probab=98.82 E-value=3.3e-09 Score=90.38 Aligned_cols=117 Identities=18% Similarity=0.234 Sum_probs=80.4
Q ss_pred eEEEEEEEEeCCceEEEeeecCCCCCCCCCccccccccCCCCCChhhhhhhhcHHHHHHHHHHHHhCCCCCCCCCCceee
Q 029516 11 HRAFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTP 90 (192)
Q Consensus 11 h~av~v~i~~~~~~lLL~~R~~~k~~~pg~W~~p~gG~ve~gEs~~~~~~~~~~~eaa~REl~EEtGl~~~~~~~~~l~~ 90 (192)
..+++++|+|.+++||+.+-.......+|.|-+| +|.++++|+ +..+|+||++||||++...+..
T Consensus 115 ~vgvg~~V~n~~~eVlVv~e~d~~~~~~~~wK~p-tG~v~~~e~---------i~~gavrEvkeetgid~ef~eV----- 179 (295)
T KOG0648|consen 115 RVGVGAFVLNKKKEVLVVQEKDGAVKIRGGWKLP-TGRVEEGED---------IWHGAVREVKEETGIDTEFVEV----- 179 (295)
T ss_pred heeeeeeEecCCceeEEEEecccceeeccccccc-ceEeccccc---------chhhhhhhhHHHhCcchhhhhH-----
Confidence 4578899999988999987655555678999999 789999999 8999999999999997654321
Q ss_pred eeEEEEEccCCCCcceeEEEEEEEEee---CCccCCCccccccEEEecHHHHHHHHHh
Q 029516 91 LGRILYKAPSDGKWGEHELDYLLFIVR---DVSVNPNPDEVAEYKYVNREQLKELLRK 145 (192)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~f~~~~---~~~~~~~~~Ev~~~~Wv~~~el~~~~~~ 145 (192)
+.++...+..+..-.-..+|++.. ...+..+..|+..++|++.++.......
T Consensus 180 ---la~r~~H~~~~~~~ksd~f~~c~L~p~s~~i~~~~~ei~~~~Wmp~~e~v~qp~~ 234 (295)
T KOG0648|consen 180 ---LAFRRAHNATFGLIKSDMFFTCELRPRSLDITKCKREIEAAAWMPIEEYVSQPLV 234 (295)
T ss_pred ---HHHHhhhcchhhcccccceeEEEeeccccccchhHHHHHHHhcccHHHhhccccc
Confidence 111111111111001122333332 3456677789999999999988765543
No 92
>KOG3041 consensus Nucleoside diphosphate-sugar hydrolase of the MutT (NUDIX) family [Replication, recombination and repair]
Probab=98.48 E-value=3.5e-06 Score=68.03 Aligned_cols=114 Identities=16% Similarity=0.095 Sum_probs=69.1
Q ss_pred EEEEE-EEeCCc--eEEEeeecCCCCCCCCCccccccccCCCCCChhhhhhhhcHHHHHHHHHHHHhCCCCCCCCCCcee
Q 029516 13 AFSVF-LFNSKY--ELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFT 89 (192)
Q Consensus 13 av~v~-i~~~~~--~lLL~~R~~~k~~~pg~W~~p~gG~ve~gEs~~~~~~~~~~~eaa~REl~EEtGl~~~~~~~~~l~ 89 (192)
+|+++ ++..+| .++|++.- ..+.-.-..++| +|-++.||+ ++.||+|||+||||+.-....
T Consensus 75 gVaIl~il~~dG~~~ivL~kQf-RpP~Gk~ciElP-AGLiD~ge~---------~~~aAiREl~EEtGy~gkv~~----- 138 (225)
T KOG3041|consen 75 GVAILAILESDGKPYIVLVKQF-RPPTGKICIELP-AGLIDDGED---------FEGAAIRELEEETGYKGKVDM----- 138 (225)
T ss_pred eEEEEEEEecCCcEEEEEEEee-cCCCCcEEEEcc-cccccCCCc---------hHHHHHHHHHHHhCccceeee-----
Confidence 44444 344566 46665522 111122368899 899999999 899999999999999844221
Q ss_pred eeeEEEEEccCCCCcceeEEEEEEE-EeeC----C--ccCCCccccccEEEecHHHHHHHHHhh
Q 029516 90 PLGRILYKAPSDGKWGEHELDYLLF-IVRD----V--SVNPNPDEVAEYKYVNREQLKELLRKA 146 (192)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~f~-~~~~----~--~~~~~~~Ev~~~~Wv~~~el~~~~~~~ 146 (192)
.....|..| +......+.+.+ +..+ . ...+++.|..++.-++..+|.+.+.+.
T Consensus 139 -~s~~~f~DP---Gltn~~~~iv~v~idg~~pEnqrp~q~ledgEfIev~~i~~~~L~~~~~~l 198 (225)
T KOG3041|consen 139 -VSPTVFLDP---GLTNCNLCIVVVDIDGDVPENQRPVQQLEDGEFIEVFLIPLSELWRELADL 198 (225)
T ss_pred -ccccEEcCC---CCCCCceEEEEEEecCCCccccCccccCCCCceEEEEEeeHHHHHHHHHhh
Confidence 112234433 222222332222 2211 1 124567899999999999999877654
No 93
>PF14815 NUDIX_4: NUDIX domain; PDB: 1VRL_A 1RRQ_A 3G0Q_A 3FSQ_A 1RRS_A 3FSP_A.
Probab=98.23 E-value=3.6e-06 Score=61.92 Aligned_cols=100 Identities=19% Similarity=0.254 Sum_probs=52.4
Q ss_pred EEEEeCCceEEEeeecCCCCCCCCCccccccccCCCCCChhhhhhhhcHHHHHHHHHHHHhCCCCCCCCCCceeeeeEEE
Q 029516 16 VFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPLGRIL 95 (192)
Q Consensus 16 v~i~~~~~~lLL~~R~~~k~~~pg~W~~p~gG~ve~gEs~~~~~~~~~~~eaa~REl~EEtGl~~~~~~~~~l~~~~~~~ 95 (192)
+++++.+|++||+||..+ ..+.|+|+|| .--.+ +++ ..+++.+.+.+..|+.+... ..++.+.
T Consensus 2 ~~i~~~~~~~Ll~kRp~~-gll~GLwefP-~~e~~-~~~---------~~~~l~~~~~~~~~~~~~~~-----~~~~~v~ 64 (114)
T PF14815_consen 2 LLIIRSQGRVLLEKRPEK-GLLAGLWEFP-LIESD-EED---------DEEELEEWLEEQLGLSIRSV-----EPLGTVK 64 (114)
T ss_dssp EEEEETTSEEEEEE--SS-STTTT-EE---EEE-S-SS----------CHHHHHHHTCCSSS-EEEE------S-SEEEE
T ss_pred EEEEEeCCEEEEEECCCC-ChhhcCcccC-EeCcc-CCC---------CHHHHHHHHHHHcCCChhhh-----eecCcEE
Confidence 567889999999999855 4699999999 44333 333 24555666667777765422 2344444
Q ss_pred EEccCCCCcceeEE--EEEEEEeeCCccCCCccccccEEEecHHHHHHH
Q 029516 96 YKAPSDGKWGEHEL--DYLLFIVRDVSVNPNPDEVAEYKYVNREQLKEL 142 (192)
Q Consensus 96 ~~~~~~~~~~~~~~--~~~f~~~~~~~~~~~~~Ev~~~~Wv~~~el~~~ 142 (192)
+... |.. .++|.+........ +..++.|++.+++.++
T Consensus 65 H~fS-------H~~~~~~~~~~~~~~~~~~---~~~~~~W~~~~~l~~~ 103 (114)
T PF14815_consen 65 HVFS-------HRRWTIHVYEVEVSADPPA---EPEEGQWVSLEELDQY 103 (114)
T ss_dssp EE-S-------SEEEEEEEEEEEEE-SS-------TTEEEEEGGGGGGS
T ss_pred EEcc-------ceEEEEEEEEEEecCCCCC---CCCCcEEEEHHHHhhC
Confidence 3322 222 23444443221111 4578999999998864
No 94
>COG4119 Predicted NTP pyrophosphohydrolase [DNA replication, recombination, and repair / General function prediction only]
Probab=98.08 E-value=5e-05 Score=57.50 Aligned_cols=119 Identities=19% Similarity=0.176 Sum_probs=66.8
Q ss_pred EEEEEEEEeC-Cc--eEEEeeecCCC--CCCCCCccccccccCCCCCChhhhhhhhcHHHHHHHHHHHHhCCCCCCCCCC
Q 029516 12 RAFSVFLFNS-KY--ELLLQQRSGTK--VTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVD 86 (192)
Q Consensus 12 ~av~v~i~~~-~~--~lLL~~R~~~k--~~~pg~W~~p~gG~ve~gEs~~~~~~~~~~~eaa~REl~EEtGl~~~~~~~~ 86 (192)
+.++++++.. .| .|||..-...- ...-|.|++| .|-...||+ +..||+||..||+||+++..
T Consensus 4 ~SAGvLlYR~~aG~v~VLLvHPGGPFWa~kD~GAWSIP-KGey~~gEd---------p~~AArREf~EE~Gi~vdGP--- 70 (161)
T COG4119 4 LSAGVLLYRARAGVVDVLLVHPGGPFWAGKDDGAWSIP-KGEYTGGED---------PWLAARREFSEEIGICVDGP--- 70 (161)
T ss_pred ccceeEEEEecCCCEEEEEecCCCCccccCCCCccccc-ccccCCCcC---------HHHHHHHHhhhhhceeecCc---
Confidence 4455666543 23 45554322110 0114889999 899999999 79999999999999998631
Q ss_pred ceeeeeEEEEEccCCCCcce--e--EE------EEEEEEeeC-CccCCC-ccccccEEEecHHHHHHHHHhh
Q 029516 87 EFTPLGRILYKAPSDGKWGE--H--EL------DYLLFIVRD-VSVNPN-PDEVAEYKYVNREQLKELLRKA 146 (192)
Q Consensus 87 ~l~~~~~~~~~~~~~~~~~~--~--~~------~~~f~~~~~-~~~~~~-~~Ev~~~~Wv~~~el~~~~~~~ 146 (192)
+..+|.. +.+.+..... + ++ ...|..... .+-.+. --|++...|+++.+....+..+
T Consensus 71 -~~~lG~~--kQ~GGKvVta~~veae~Dva~~rSntFe~eWPprSG~M~~FPEVDRagWF~l~eAr~Kil~g 139 (161)
T COG4119 71 -RIDLGSL--KQSGGKVVTAFGVEAELDVADARSNTFELEWPPRSGKMRKFPEVDRAGWFPLAEARTKILKG 139 (161)
T ss_pred -hhhhhhh--ccCCCcEEEEEeeeeeeehhhhhcceeeeecCCCCCccccCcccccccceecHHHHhHHhhc
Confidence 2233432 2221110000 0 00 012222211 111111 2488999999999999887764
No 95
>COG4112 Predicted phosphoesterase (MutT family) [General function prediction only]
Probab=97.70 E-value=0.00072 Score=53.30 Aligned_cols=133 Identities=16% Similarity=0.264 Sum_probs=76.8
Q ss_pred EEEEEeCCceEEEeeecCCC--CCCCCCccccccccCCCCCChhhhhhhhc-HHHHHHHHHHHHhCCCCCCCCCCceeee
Q 029516 15 SVFLFNSKYELLLQQRSGTK--VTFPLVWTNTCCSHPLYRESELIEENALG-VRNAAQRKLLDELGICAEDVPVDEFTPL 91 (192)
Q Consensus 15 ~v~i~~~~~~lLL~~R~~~k--~~~pg~W~~p~gG~ve~gEs~~~~~~~~~-~~eaa~REl~EEtGl~~~~~~~~~l~~~ 91 (192)
.|+|.|. ++||+..|-... ....+..++.+|||+..++... ++-- +.-.+.|||.||+++.-++. ..+.++
T Consensus 65 Yvvi~~e-devliyeRltgggE~RLHn~~SlG~GGHmn~~~GA~---s~~evLk~n~~REleEEv~vseqd~--q~~e~l 138 (203)
T COG4112 65 YVVIMDE-DEVLIYERLTGGGEKRLHNLYSLGIGGHMNEGDGAT---SREEVLKGNLERELEEEVDVSEQDL--QELEFL 138 (203)
T ss_pred EEEEecC-CEEEEEEeccCcchhhhccccccccccccccCCCcc---cHHHHHccchHHHHHHHhCcCHHHh--hhheee
Confidence 4455554 499998885432 2345788888999999877521 1100 11226799999999986643 245667
Q ss_pred eEEEEEccCCCCcceeEEEEEEEEeeCC-ccCCCccccccEEEecHHHHHHHHHhhcCCCCCcccChhHHHHHHH
Q 029516 92 GRILYKAPSDGKWGEHELDYLLFIVRDV-SVNPNPDEVAEYKYVNREQLKELLRKADAGEEGLKLSPWFRLVVDN 165 (192)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~~f~~~~~~-~~~~~~~Ev~~~~Wv~~~el~~~~~~~~~~~~~~~~~p~~~~~~~~ 165 (192)
|-+.- ..+..+.-.+--+|...... .......+.-+++|+..++|...- ..+-.|...+++.
T Consensus 139 GlINd---d~neVgkVHiG~lf~~~~k~ndvevKEkd~~~~kwik~~ele~~y---------~~~EtWS~~~~~~ 201 (203)
T COG4112 139 GLIND---DTNEVGKVHIGALFLGRGKFNDVEVKEKDLFEWKWIKLEELEKFY---------GVMETWSKISAAV 201 (203)
T ss_pred eeecC---CCcccceEEEEEEEEeeccccceeeeecceeeeeeeeHHHHHHHh---------hhhHHHHHHHHHH
Confidence 65521 12222211122244443321 233334566789999999999842 2566666655543
No 96
>KOG4195 consensus Transient receptor potential-related channel 7 [Inorganic ion transport and metabolism]
Probab=96.75 E-value=0.0017 Score=53.51 Aligned_cols=39 Identities=18% Similarity=0.152 Sum_probs=33.2
Q ss_pred eEEEeeecCCCCCCCCCccccccccCCCCCChhhhhhhhcHHHHHHHHHHHHhC
Q 029516 24 ELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELG 77 (192)
Q Consensus 24 ~lLL~~R~~~k~~~pg~W~~p~gG~ve~gEs~~~~~~~~~~~eaa~REl~EEtG 77 (192)
+++.+||+.+ |.|.+| ||.+++||- +-.+++||..||.=
T Consensus 140 e~vavkr~d~-----~~WAiP-GGmvdpGE~---------vs~tLkRef~eEa~ 178 (275)
T KOG4195|consen 140 EFVAVKRPDN-----GEWAIP-GGMVDPGEK---------VSATLKREFGEEAM 178 (275)
T ss_pred EEEEEecCCC-----CcccCC-CCcCCchhh---------hhHHHHHHHHHHHH
Confidence 3556677654 789999 999999999 89999999999963
No 97
>PRK10880 adenine DNA glycosylase; Provisional
Probab=96.73 E-value=0.027 Score=49.82 Aligned_cols=34 Identities=18% Similarity=0.161 Sum_probs=25.0
Q ss_pred ceEEEEEEEEeCCceEEEeeecCCCCCCCCCcccc
Q 029516 10 LHRAFSVFLFNSKYELLLQQRSGTKVTFPLVWTNT 44 (192)
Q Consensus 10 ~h~av~v~i~~~~~~lLL~~R~~~k~~~pg~W~~p 44 (192)
..+...++++..++++||+||..+. .+.|+|+||
T Consensus 229 ~~~~~~~~~~~~~~~~~l~~r~~~g-l~~gl~~fP 262 (350)
T PRK10880 229 PERTGYFLLLQHGDEVWLEQRPPSG-LWGGLFCFP 262 (350)
T ss_pred CeEEEEEEEEEECCEEEEEECCccC-hhhccccCC
Confidence 3444455555567899999997554 689999999
No 98
>PF13869 NUDIX_2: Nucleotide hydrolase; PDB: 3MDG_B 2J8Q_B 3Q2S_A 3P5T_D 3BAP_A 2CL3_A 3P6Y_A 3Q2T_B 3BHO_A 3N9U_A ....
Probab=95.69 E-value=0.025 Score=45.67 Aligned_cols=122 Identities=16% Similarity=0.032 Sum_probs=64.7
Q ss_pred cCCcceEEEEEEEEeCCc--eEEEeeecCCCCCCCCCccccccccCCCCCChhhhhhhhcHHHHHHHHHHHHhCCCCCCC
Q 029516 6 SLNLLHRAFSVFLFNSKY--ELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDV 83 (192)
Q Consensus 6 ~~~~~h~av~v~i~~~~~--~lLL~~R~~~k~~~pg~W~~p~gG~ve~gEs~~~~~~~~~~~eaa~REl~EEtGl~~~~~ 83 (192)
+.|+++.+-+|+++...+ .|||.|.... .+.+| ||.+.+||+ ..++.+|.|.+-+|......
T Consensus 39 ~~GmRrsVe~Vllvh~h~~PHvLLLq~~~~------~fkLP-Gg~l~~gE~---------e~~gLkrkL~~~l~~~~~~~ 102 (188)
T PF13869_consen 39 KEGMRRSVEGVLLVHEHGHPHVLLLQIGNT------FFKLP-GGRLRPGED---------EIEGLKRKLTEKLSPEDGVD 102 (188)
T ss_dssp HHSSEEEEEEEEEEEETTEEEEEEEEETTT------EEE-S-EEE--TT-----------HHHHHHHHHHHHHB-SSSS-
T ss_pred HhCCceEEEEEEEEecCCCcEEEEEeccCc------cccCC-ccEeCCCCC---------hhHHHHHHHHHHcCCCcCCC
Confidence 467777777777777666 5888775432 57788 999999999 69999999999999875321
Q ss_pred CCCce-eeeeEEEEEcc---------CCCCcceeEEEEEEEEeeCC--ccCCCccccccEEEecHHHHHHHHHhh
Q 029516 84 PVDEF-TPLGRILYKAP---------SDGKWGEHELDYLLFIVRDV--SVNPNPDEVAEYKYVNREQLKELLRKA 146 (192)
Q Consensus 84 ~~~~l-~~~~~~~~~~~---------~~~~~~~~~~~~~f~~~~~~--~~~~~~~Ev~~~~Wv~~~el~~~~~~~ 146 (192)
..-++ ..+|.. |+.. +.-.....+...+|++.... ..... ....+.=+++=||-+-...+
T Consensus 103 ~~w~vge~l~~W-wRp~Fe~~~YPYlP~HitkPKE~~klylV~Lpe~~~F~VP--kn~kL~AvPLFeLydN~~~Y 174 (188)
T PF13869_consen 103 PDWEVGECLGTW-WRPNFEPFMYPYLPPHITKPKECIKLYLVQLPEKCLFAVP--KNMKLVAVPLFELYDNAQRY 174 (188)
T ss_dssp ---EEEEEEEEE-EESSSSS--BSS--TT-SS-SEEEEEEEEE--SSEEEEEE--TTSEEEEEEHHHHTTTHHHH
T ss_pred CCcEecCEEEEE-eCCCCCCCCCCCCCcccCChhheeEEEEEecCCCceEecC--CCCeEEeecHhhhhcChhhc
Confidence 11011 123332 2211 11111224555666665421 11111 12566777888887654443
No 99
>PF14443 DBC1: DBC1
Probab=94.28 E-value=0.36 Score=36.58 Aligned_cols=68 Identities=16% Similarity=0.241 Sum_probs=42.8
Q ss_pred eEEEeeecCCCCCCCCCccccc-cccCCCCCChhhhhhhhcHHHHHHHHHHHHhCCCCCCCCCCceeeeeEEEEEccCC
Q 029516 24 ELLLQQRSGTKVTFPLVWTNTC-CSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPLGRILYKAPSD 101 (192)
Q Consensus 24 ~lLL~~R~~~k~~~pg~W~~p~-gG~ve~gEs~~~~~~~~~~~eaa~REl~EEtGl~~~~~~~~~l~~~~~~~~~~~~~ 101 (192)
++|+.+|.+.--.-.|-|+... ||.+..+-+. +..+|+|=+++-|||+.+.-. ++..+-.++|..+..
T Consensus 9 kFlv~~k~ke~~aiGG~WspsLDG~DP~~dp~~--------LI~TAiR~~K~~tgiDLS~Ct--~W~rf~Ei~Y~R~~~ 77 (126)
T PF14443_consen 9 KFLVGKKDKEIMAIGGPWSPSLDGGDPSSDPSV--------LIRTAIRTCKALTGIDLSNCT--QWYRFAEIHYYRPGS 77 (126)
T ss_pred eeEEeecCceEEecCCcCCcccCCCCCCCCcHH--------HHHHHHHHHHHHhccchhhcC--ccceeeEEEEecCCC
Confidence 3555555442222357887663 4555554443 799999999999999987532 344455667766553
No 100
>KOG4432 consensus Uncharacterized NUDIX family hydrolase [General function prediction only]
Probab=93.38 E-value=0.56 Score=40.68 Aligned_cols=87 Identities=18% Similarity=0.162 Sum_probs=51.7
Q ss_pred cccCCCCCChhhhhhhhcHHHHHHHHHHHHhCCCCCCCCCCceeeeeEEEEEccCCCCcceeEEEEEEEEeeC------C
Q 029516 46 CSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPLGRILYKAPSDGKWGEHELDYLLFIVRD------V 119 (192)
Q Consensus 46 gG~ve~gEs~~~~~~~~~~~eaa~REl~EEtGl~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~------~ 119 (192)
.|.++..-| ..+-|.||..||.|.++. .+++.....+.--....+ ..+ ..+|+-..+ +
T Consensus 290 ag~Vd~p~s---------~~e~a~~e~veecGYdlp---~~~~k~va~y~sGVG~SG---~~Q-Tmfy~eVTdA~rsgpG 353 (405)
T KOG4432|consen 290 AGRVDDPFS---------DPEKAARESVEECGYDLP---EDSFKLVAKYISGVGQSG---DTQ-TMFYVEVTDARRSGPG 353 (405)
T ss_pred cccCCCCcc---------cHHHHHHHHHHHhCCCCC---HHHHhhhheeecccCCcC---Cee-EEEEEEeehhhccCCC
Confidence 466665555 688999999999999975 334443333211111111 122 222222221 1
Q ss_pred ccCCCccccccEEEecHHHHHHHHHhhcC
Q 029516 120 SVNPNPDEVAEYKYVNREQLKELLRKADA 148 (192)
Q Consensus 120 ~~~~~~~Ev~~~~Wv~~~el~~~~~~~~~ 148 (192)
--..+++|..+..=+|+++++.+...++.
T Consensus 354 gg~~ee~E~IEvv~lsle~a~~~~~q~~I 382 (405)
T KOG4432|consen 354 GGEKEEDEDIEVVRLSLEDAPSLYRQHNI 382 (405)
T ss_pred CCcccccceeeEEEechhhhhHHHhccCC
Confidence 12345578888899999999999988754
No 101
>KOG2937 consensus Decapping enzyme complex, predicted pyrophosphatase DCP2 [RNA processing and modification]
Probab=91.98 E-value=0.036 Score=48.32 Aligned_cols=101 Identities=18% Similarity=0.187 Sum_probs=60.6
Q ss_pred EEEEEEEeCCc-eEEEeeecCCCCCCCCCccccccccCCCCCChhhhhhhhcHHHHHHHHHHHHhCCCCCCCCCCceeee
Q 029516 13 AFSVFLFNSKY-ELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPL 91 (192)
Q Consensus 13 av~v~i~~~~~-~lLL~~R~~~k~~~pg~W~~p~gG~ve~gEs~~~~~~~~~~~eaa~REl~EEtGl~~~~~~~~~l~~~ 91 (192)
+-++.++|..- ++||++-.. ...|.+| -|++...|+ -..||+||+.||+|.+...--. + .-
T Consensus 84 v~ga~ild~~~sr~llv~g~q-----a~sw~fp-rgK~~kdes---------d~~caiReV~eetgfD~skql~-~--~e 145 (348)
T KOG2937|consen 84 VRGAIILDEKRSRCLLVKGWQ-----ASSWSFP-RGKISKDES---------DSDCAIREVTEETGFDYSKQLQ-D--NE 145 (348)
T ss_pred CchHhhhhhhhhhhheeecee-----ccccccc-Cccccccch---------hhhcchhcccchhhcCHHHHhc-c--cc
Confidence 34556666553 677765322 2459999 799999998 5899999999999999864210 0 01
Q ss_pred eEEEEEccCCCCcceeEEEEEEEEe--e-C--CccCCCccccccEEEecHHHHH
Q 029516 92 GRILYKAPSDGKWGEHELDYLLFIV--R-D--VSVNPNPDEVAEYKYVNREQLK 140 (192)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~~f~~~--~-~--~~~~~~~~Ev~~~~Wv~~~el~ 140 (192)
| +.... ..+...+|+.. . + ..+.. ..|++...|..++++.
T Consensus 146 ~-Ie~nI-------~dq~~~~fIi~gvs~d~~f~~~v-~~eis~ihW~~l~~l~ 190 (348)
T KOG2937|consen 146 G-IETNI-------RDQLVRLFIINGVSEDTNFNPRV-RKEISKIHWHYLDHLV 190 (348)
T ss_pred C-cccch-------hhceeeeeeeccceeeeecchhh-hccccceeeeehhhhc
Confidence 1 11111 12223334331 1 1 11211 2578889999999993
No 102
>KOG4548 consensus Mitochondrial ribosomal protein L17 [Translation, ribosomal structure and biogenesis]
Probab=91.10 E-value=0.98 Score=38.12 Aligned_cols=107 Identities=22% Similarity=0.249 Sum_probs=60.6
Q ss_pred eEEEeeecCCCCCCCCCccccccccC-CCCCChhhhhhhhcHHHHHHHHHHHHhCCCCCCCCCCceeeeeEEEEEccCCC
Q 029516 24 ELLLQQRSGTKVTFPLVWTNTCCSHP-LYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPLGRILYKAPSDG 102 (192)
Q Consensus 24 ~lLL~~R~~~k~~~pg~W~~p~gG~v-e~gEs~~~~~~~~~~~eaa~REl~EEtGl~~~~~~~~~l~~~~~~~~~~~~~~ 102 (192)
-+||++|.-.+ -+.|-|| -+.. +.+++ ...+|.|.|..-.|=....... .=.++|...++.+-..
T Consensus 140 LyLLV~~k~g~---~s~w~fP-~~~~s~~~~~---------lr~~ae~~Lk~~~ge~~~t~fv-gnaP~g~~~~q~pr~~ 205 (263)
T KOG4548|consen 140 LYLLVKRKFGK---SSVWIFP-NRQFSSSEKT---------LRGHAERDLKVLSGENKSTWFV-GNAPFGHTPLQSPREM 205 (263)
T ss_pred EEEEEeeccCc---cceeeCC-CcccCCccch---------HHHHHHHHHHHHhcchhhhhee-ccCccccccccCcccc
Confidence 36666654333 3689999 5666 88888 8999999999988876653211 1134554444444221
Q ss_pred CcceeEEEEEEEEee---CCccCCCccccccEEEecHHHHHHHHHh
Q 029516 103 KWGEHELDYLLFIVR---DVSVNPNPDEVAEYKYVNREQLKELLRK 145 (192)
Q Consensus 103 ~~~~~~~~~~f~~~~---~~~~~~~~~Ev~~~~Wv~~~el~~~~~~ 145 (192)
..-...-..+|+... ... .....-..++.|++-++|.+.+..
T Consensus 206 ~~e~~~~sk~ff~k~~lv~~~-~~kn~n~edfvWvTkdel~e~l~~ 250 (263)
T KOG4548|consen 206 TTEEPVSSKVFFFKASLVANS-NQKNQNKEDFVWVTKDELGEKLPK 250 (263)
T ss_pred cccccccceeEEeeeeecccc-chhcccccceEEechHHHhhhcch
Confidence 111000012333322 111 112234556999999999987653
No 103
>KOG1689 consensus mRNA cleavage factor I subunit [RNA processing and modification]
Probab=90.26 E-value=0.74 Score=36.79 Aligned_cols=58 Identities=17% Similarity=0.155 Sum_probs=41.2
Q ss_pred CCcceEEEEEEEEeCC--ceEEEeeecCCCCCCCCCccccccccCCCCCChhhhhhhhcHHHHHHHHHHHHhCCCC
Q 029516 7 LNLLHRAFSVFLFNSK--YELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICA 80 (192)
Q Consensus 7 ~~~~h~av~v~i~~~~--~~lLL~~R~~~k~~~pg~W~~p~gG~ve~gEs~~~~~~~~~~~eaa~REl~EEtGl~~ 80 (192)
.|+++.+-+++|+... -.|||.|-... ..-+| ||.+++||+ -.+.+.|-+.|-+|-..
T Consensus 66 ~gmRrsvegvlivheH~lPHvLLLQig~t------f~KLP-GG~L~pGE~---------e~~Gl~r~l~~~Lgr~d 125 (221)
T KOG1689|consen 66 EGMRRSVEGVLIVHEHNLPHVLLLQIGNT------FFKLP-GGRLRPGED---------EADGLKRLLTESLGRSD 125 (221)
T ss_pred hhhhheeeeeEEEeecCCCeEEEEeeCCE------EEecC-CCccCCCcc---------hhHHHHHHHHHHhcccc
Confidence 4566666677777654 36666664322 34567 899999999 58999999999999433
No 104
>PRK13910 DNA glycosylase MutY; Provisional
Probab=86.62 E-value=1.2 Score=38.40 Aligned_cols=30 Identities=3% Similarity=0.060 Sum_probs=21.7
Q ss_pred EEEEEEEEeCCceEEEeeecCCCCCCCCCcccc
Q 029516 12 RAFSVFLFNSKYELLLQQRSGTKVTFPLVWTNT 44 (192)
Q Consensus 12 ~av~v~i~~~~~~lLL~~R~~~k~~~pg~W~~p 44 (192)
....+++.+ ++++||+||. +..|.|+|+||
T Consensus 187 ~~~~~~~~~-~~~~ll~kr~--~~l~~gl~~fP 216 (289)
T PRK13910 187 ERYLGVVIQ-NNQIALEKIE--QKLYLGMHHFP 216 (289)
T ss_pred EEEEEEEEE-CCEEEEEECC--CchhcccccCC
Confidence 334444444 6789999984 34789999999
No 105
>KOG4432 consensus Uncharacterized NUDIX family hydrolase [General function prediction only]
Probab=84.83 E-value=2.2 Score=37.05 Aligned_cols=39 Identities=18% Similarity=0.199 Sum_probs=30.1
Q ss_pred cccCCCCCChhhhhhhhcHHHHHHHHHHHHhCCCCCCCCCCceeeeeEEEEEc
Q 029516 46 CSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPLGRILYKA 98 (192)
Q Consensus 46 gG~ve~gEs~~~~~~~~~~~eaa~REl~EEtGl~~~~~~~~~l~~~~~~~~~~ 98 (192)
||-++..-| +.+-|..|+.||.|..+. +++|..+ +.|..
T Consensus 85 ~g~idke~s---------~~eia~eev~eecgy~v~---~d~l~hv--~~~~~ 123 (405)
T KOG4432|consen 85 AGLIDKELS---------PREIASEEVAEECGYRVD---PDDLIHV--ITFVV 123 (405)
T ss_pred ccccccccC---------HHHHhHHHHHHHhCCcCC---hhHceEE--EEEEe
Confidence 788888877 899999999999999986 4555443 44543
No 106
>COG1194 MutY A/G-specific DNA glycosylase [DNA replication, recombination, and repair]
Probab=69.88 E-value=2.8 Score=36.98 Aligned_cols=33 Identities=21% Similarity=0.364 Sum_probs=26.8
Q ss_pred eEEEEEEEEeCCceEEEeeecCCCCCCCCCcccc
Q 029516 11 HRAFSVFLFNSKYELLLQQRSGTKVTFPLVWTNT 44 (192)
Q Consensus 11 h~av~v~i~~~~~~lLL~~R~~~k~~~pg~W~~p 44 (192)
.+....++.+.+|.++|.||..+. .+.|+|++|
T Consensus 235 ~~~~~~~~~~~~~~~~l~kr~~~g-l~~gl~~fP 267 (342)
T COG1194 235 RRFAAFLILNRDGEVLLEKRPEKG-LLGGLWCFP 267 (342)
T ss_pred hheeeEEEEccCcchhhhhCcccC-ceecccccc
Confidence 566667777888999999988654 578999999
No 107
>TIGR01084 mutY A/G-specific adenine glycosylase. This equivalog model identifies mutY members of the pfam00730 superfamily (HhH-GPD: Helix-hairpin-helix and Gly/Pro rich loop followed by a conserved aspartate). The major members of the superfamily are nth and mutY.
Probab=62.89 E-value=30 Score=29.56 Aligned_cols=10 Identities=0% Similarity=-0.150 Sum_probs=8.7
Q ss_pred CCCCCCcccc
Q 029516 35 VTFPLVWTNT 44 (192)
Q Consensus 35 ~~~pg~W~~p 44 (192)
..+.|+|+||
T Consensus 250 ~~~~gl~~~p 259 (275)
T TIGR01084 250 GLWGGLYCFP 259 (275)
T ss_pred chhhccccCC
Confidence 4689999999
No 108
>PF03487 IL13: Interleukin-13; InterPro: IPR020470 Interleukin-13 (IL-13) is a pleiotropic cytokine which may be important in the regulation of the inflammatory and immune responses []. It inhibits inflammatory cytokine production and synergises with IL-2 in regulating interferon-gamma synthesis. The sequences of IL-4 and IL-13 are distantly related.; PDB: 3G6D_A 3L5W_J 3BPO_A 1GA3_A 1IK0_A 3L5X_A 3L5Y_A 1IJZ_A 3LB6_B.
Probab=51.75 E-value=14 Score=22.32 Aligned_cols=22 Identities=18% Similarity=0.160 Sum_probs=11.6
Q ss_pred cccCCCCCChhhhhhhhcHHHHHHHHHHHHh
Q 029516 46 CSHPLYRESELIEENALGVRNAAQRKLLDEL 76 (192)
Q Consensus 46 gG~ve~gEs~~~~~~~~~~~eaa~REl~EEt 76 (192)
||-..+|-- +...+.||+-||+
T Consensus 15 ggLasPgPv---------p~~~alkELIeEL 36 (43)
T PF03487_consen 15 GGLASPGPV---------PSSTALKELIEEL 36 (43)
T ss_dssp --------S----------HHHHHHHHHHHH
T ss_pred cccCCCCCC---------CchHHHHHHHHHH
Confidence 666667777 6788999999996
No 109
>PF07494 Reg_prop: Two component regulator propeller; InterPro: IPR011110 A large group of two component regulator proteins appear to have the same N-terminal structure of 14 tandem repeats. These repeats show homology to members of IPR002372 from INTERPRO and IPR001680 from INTERPRO indicating that they are likely to form a beta-propeller. This family has been built with artificially high cut-offs in order to avoid overlaps with other beta-propeller families. The fourteen repeats are likely to form two propellers; it is not clear if these structures are likely to recruit other proteins or interact with DNA.; PDB: 3V9F_D 3VA6_B 3OTT_B 4A2M_D 4A2L_B.
Probab=30.70 E-value=57 Score=16.93 Aligned_cols=18 Identities=11% Similarity=0.063 Sum_probs=12.9
Q ss_pred eEEEEEEEEeCCceEEEe
Q 029516 11 HRAFSVFLFNSKYELLLQ 28 (192)
Q Consensus 11 h~av~v~i~~~~~~lLL~ 28 (192)
...+.++..|++|++++.
T Consensus 4 ~n~I~~i~~D~~G~lWig 21 (24)
T PF07494_consen 4 NNNIYSIYEDSDGNLWIG 21 (24)
T ss_dssp SSCEEEEEE-TTSCEEEE
T ss_pred CCeEEEEEEcCCcCEEEE
Confidence 445677888999999884
No 110
>KOG1202 consensus Animal-type fatty acid synthase and related proteins [Lipid transport and metabolism]
Probab=30.22 E-value=45 Score=34.91 Aligned_cols=19 Identities=21% Similarity=0.356 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHhCCCCCC
Q 029516 64 VRNAAQRKLLDELGICAED 82 (192)
Q Consensus 64 ~~eaa~REl~EEtGl~~~~ 82 (192)
..+.++||+++|.|+.++.
T Consensus 277 ~Q~qLi~e~Yse~Gl~P~s 295 (2376)
T KOG1202|consen 277 MQEQLIRETYSEAGLNPES 295 (2376)
T ss_pred HHHHHHHHHHHhcCCCccc
Confidence 6899999999999999875
No 111
>PF09505 Dimeth_Pyl: Dimethylamine methyltransferase (Dimeth_PyL); InterPro: IPR012653 This family consists of dimethylamine methyltransferases from the genus Methanosarcina. It is found in three nearly identical copies in each of Methanosarcina acetivorans, Methanosarcina barkeri, and Methanosarcina mazei. It is one of a suite of three non-homologous enzymes with a critical UAG-encoded pyrrolysine residue in these species (along with trimethylamine methyltransferase and monomethylamine methyltransferase). It demethylates dimethylamine, leaving monomethylamine, and methylates the prosthetic group of the small corrinoid protein MtbC. The methyl group is then transferred by methylcorrinoid:coenzyme M methyltransferase to coenzyme M. Note that the pyrrolysine residue is variously translated as K or X, or as a stop codon that truncates the sequence.; GO: 0008168 methyltransferase activity, 0015948 methanogenesis
Probab=23.12 E-value=51 Score=29.29 Aligned_cols=24 Identities=21% Similarity=0.097 Sum_probs=19.0
Q ss_pred cCCCCCChhhhhhhhcHHHHHHHHHHHHhCCCC
Q 029516 48 HPLYRESELIEENALGVRNAAQRKLLDELGICA 80 (192)
Q Consensus 48 ~ve~gEs~~~~~~~~~~~eaa~REl~EEtGl~~ 80 (192)
.++..+- ..+.+.||++||++|-.
T Consensus 408 ~V~~~dL---------sDe~~MrelReeL~IG~ 431 (466)
T PF09505_consen 408 GVEPMDL---------SDEYVMRELREELNIGV 431 (466)
T ss_pred CCChhhc---------ccHHHHHHHHHhcCcce
Confidence 4566666 47899999999999864
No 112
>PF12967 DUF3855: Domain of Unknown Function with PDB structure (DUF3855); InterPro: IPR024482 This domain forms an unusual alpha/beta fold where a six-stranded antiparallel beta-sheet is wrapped around a central alpha-helix, flanked by an additional alpha-helix and a small sub-domain consisting of a single beta-strand and a two-stranded antiparallel beta-sheet []. It shows weak structural similarities to phosphoribosylformylglycinamidine synthases and some thioesterase superfamily members, but its function is unknown.; PDB: 1O22_A.
Probab=21.07 E-value=1.3e+02 Score=22.70 Aligned_cols=30 Identities=30% Similarity=0.548 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHhCCCCCCCCCCceeeeeEEEE
Q 029516 64 VRNAAQRKLLDELGICAEDVPVDEFTPLGRILY 96 (192)
Q Consensus 64 ~~eaa~REl~EEtGl~~~~~~~~~l~~~~~~~~ 96 (192)
..+--+||+.-|||+..+.+.. ..+|++..
T Consensus 20 ~le~k~~ei~~etgisl~~vns---e~~grifl 49 (158)
T PF12967_consen 20 ILERKMREIFNETGISLEPVNS---ESIGRIFL 49 (158)
T ss_dssp HHHHHHHHHHHHHS-----------SSEEEEEE
T ss_pred HHHHHHHHHHHhcCceeeecch---hhhheeeE
Confidence 5778899999999999886643 23555543
Done!