BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 029517
(192 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1MOZ|A Chain A, Adp-Ribosylation Factor-Like 1 (Arl1) From Saccharomyces
Cerevisiae
pdb|1MOZ|B Chain B, Adp-Ribosylation Factor-Like 1 (Arl1) From Saccharomyces
Cerevisiae
Length = 183
Score = 111 bits (277), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 54/135 (40%), Positives = 81/135 (60%)
Query: 42 PTVGLNIGRIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTA 101
PT+G N+ + N KL WDLGGQ +R W YY + AV+FV+D+ R +
Sbjct: 48 PTIGFNVETLSYKNLKLNVWDLGGQTSIRPYWRCYYADTAAVIFVVDSTDKDRMSTASKE 107
Query: 102 LEKVLRNEDLQGAPLLILANKQDLPDAVSADELARYLDLKKLDERVCMFEAVSGYDGFGI 161
L +L+ E+LQ A LL+ ANKQD P A+SA E+++ L+L +L +R A S G GI
Sbjct: 108 LHLMLQEEELQDAALLVFANKQDQPGALSASEVSKELNLVELKDRSWSIVASSAIKGEGI 167
Query: 162 KESVEWLVEVMERSK 176
E ++WL++V++ +
Sbjct: 168 TEGLDWLIDVIKEEQ 182
>pdb|2K5U|A Chain A, Solution Structure Of Myirstoylated Yeast Arf1 Protein,
Gdp- Bound
Length = 181
Score = 108 bits (270), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 47/135 (34%), Positives = 78/135 (57%)
Query: 41 VPTVGLNIGRIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKT 100
+PT+G N+ ++ N WD+GGQ +RS+W YY V+FV+D+ SR +++
Sbjct: 46 IPTIGFNVETVQYKNISFTVWDVGGQDRIRSLWRHYYRNTEGVIFVVDSNDRSRIGEARE 105
Query: 101 ALEKVLRNEDLQGAPLLILANKQDLPDAVSADELARYLDLKKLDERVCMFEAVSGYDGFG 160
++++L ++L+ A L+ ANKQDLP+A+SA E+ L L + R +A G G
Sbjct: 106 VMQRMLNEDELRNAAWLVFANKQDLPEAMSAAEITEKLGLHSIRNRPWFIQATCATSGEG 165
Query: 161 IKESVEWLVEVMERS 175
+ E +EWL ++ S
Sbjct: 166 LYEGLEWLSNSLKNS 180
>pdb|3TJZ|A Chain A, Crystal Structure Of Arf1 Bound To The GammaZETA-Cop Core
Complex
pdb|3TJZ|D Chain D, Crystal Structure Of Arf1 Bound To The GammaZETA-Cop Core
Complex
Length = 164
Score = 108 bits (270), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 47/135 (34%), Positives = 78/135 (57%)
Query: 41 VPTVGLNIGRIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKT 100
+PT+G N+ ++ N WD+GGQ +RS+W YY V+FV+D+ SR +++
Sbjct: 29 IPTIGFNVETVQYKNISFTVWDVGGQDRIRSLWRHYYRNTEGVIFVVDSNDRSRIGEARE 88
Query: 101 ALEKVLRNEDLQGAPLLILANKQDLPDAVSADELARYLDLKKLDERVCMFEAVSGYDGFG 160
++++L ++L+ A L+ ANKQDLP+A+SA E+ L L + R +A G G
Sbjct: 89 VMQRMLNEDELRNAAWLVFANKQDLPEAMSAAEITEKLGLHSIRNRPWFIQATCATSGEG 148
Query: 161 IKESVEWLVEVMERS 175
+ E +EWL ++ S
Sbjct: 149 LYEGLEWLSNSLKNS 163
>pdb|2H18|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 10b
(Arl10b)
Length = 193
Score = 107 bits (266), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 58/167 (34%), Positives = 92/167 (55%), Gaps = 6/167 (3%)
Query: 10 KYIFTKTEFHTLLEKL----KSVYSNV--EGLPPDRIVPTVGLNIGRIEVSNSKLVFWDL 63
K +F K E L L K+ + NV G + ++PTVG N+ +I N + WD+
Sbjct: 24 KALFWKEEMELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFNMRKITKGNVTIKLWDI 83
Query: 64 GGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQ 123
GGQP RS+WE+Y A+V+++DAA + E SK L +L LQG P+L+L NK+
Sbjct: 84 GGQPRFRSMWERYCRGVSAIVYMVDAADQEKIEASKNELHNLLDKPQLQGIPVLVLGNKR 143
Query: 124 DLPDAVSADELARYLDLKKLDERVCMFEAVSGYDGFGIKESVEWLVE 170
DLP A+ EL ++L + +R ++S + I +++WL++
Sbjct: 144 DLPGALDEKELIEKMNLSAIQDREICCYSISCKEKDNIDITLQWLIQ 190
>pdb|3LRP|A Chain A, Crystal Structure Of Plasmodium Falciparum
Adp-Ribosylation Factor 1
Length = 181
Score = 107 bits (266), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 46/136 (33%), Positives = 77/136 (56%)
Query: 41 VPTVGLNIGRIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKT 100
+PT+G N+ +E N WD+GGQ +R +W YY ++FV+D+ R +D++
Sbjct: 46 IPTIGFNVETVEFRNISFTVWDVGGQDKIRPLWRHYYSNTDGLIFVVDSNDRERIDDARE 105
Query: 101 ALEKVLRNEDLQGAPLLILANKQDLPDAVSADELARYLDLKKLDERVCMFEAVSGYDGFG 160
L +++ E+L+ A +L+ ANKQDLP+A+SA E+ L L + ER ++ G G
Sbjct: 106 ELHRMINEEELKDAIILVFANKQDLPNAMSAAEVTEKLHLNTIRERNWFIQSTCATRGDG 165
Query: 161 IKESVEWLVEVMERSK 176
+ E +WL + +K
Sbjct: 166 LYEGFDWLTTHLNNAK 181
>pdb|1ZD9|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 10b
Length = 188
Score = 106 bits (265), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 55/156 (35%), Positives = 93/156 (59%), Gaps = 5/156 (3%)
Query: 26 KSVYSNV--EGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAV 83
K+ + NV G + ++PTVG N+ +I N + WD+GGQP RS+WE+Y A+
Sbjct: 35 KTTFVNVIASGQFNEDMIPTVGFNMRKITKGNVTIKLWDIGGQPRFRSMWERYCRGVSAI 94
Query: 84 VFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAVSADELARYLDLKKL 143
V+++DAA + E SK L +L LQG P+L+L NK+DLP A+ EL ++L +
Sbjct: 95 VYMVDAADQEKIEASKNELHNLLDKPQLQGIPVLVLGNKRDLPGALDEKELIEKMNLSAI 154
Query: 144 DER-VCMFEAVSGYDGFGIKESVEWLVEVMERSKRT 178
+R +C + ++S + I +++WL++ +S+R+
Sbjct: 155 QDREICCY-SISCKEKDNIDITLQWLIQ-HSKSRRS 188
>pdb|1MR3|F Chain F, Saccharomyces Cerevisiae Adp-Ribosylation Factor 2
(Scarf2) Complexed With Gdp-3'p At 1.6a Resolution
Length = 181
Score = 106 bits (264), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 46/128 (35%), Positives = 75/128 (58%)
Query: 41 VPTVGLNIGRIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKT 100
+PT+G N+ ++ N WD+GGQ +RS+W YY V+FVID+ SR +++
Sbjct: 46 IPTIGFNVETVQYKNISFTVWDVGGQDRIRSLWRHYYRNTEGVIFVIDSNDRSRIGEARE 105
Query: 101 ALEKVLRNEDLQGAPLLILANKQDLPDAVSADELARYLDLKKLDERVCMFEAVSGYDGFG 160
++++L ++L+ A L+ ANKQDLP+A+SA E+ L L + R ++ G G
Sbjct: 106 VMQRMLNEDELRNAVWLVFANKQDLPEAMSAAEITEKLGLHSIRNRPWFIQSTCATSGEG 165
Query: 161 IKESVEWL 168
+ E +EWL
Sbjct: 166 LYEGLEWL 173
>pdb|2KSQ|A Chain A, The Myristoylated Yeast Arf1 In A Gtp And Bicelle Bound
Conformation
Length = 181
Score = 105 bits (263), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 47/135 (34%), Positives = 77/135 (57%)
Query: 41 VPTVGLNIGRIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKT 100
+PT+G N+ ++ N WD+GGQ +RS+W YY V+FV+D+ SR +++
Sbjct: 46 IPTIGFNVECVQYCNISFTVWDVGGQDRIRSLWRHYYCNTEGVIFVVDSNDRSRIGEARE 105
Query: 101 ALEKVLRNEDLQGAPLLILANKQDLPDAVSADELARYLDLKKLDERVCMFEAVSGYDGFG 160
++++L ++L A L+ ANKQDLP+A+SA E+ L L + R +A G G
Sbjct: 106 VMQRMLNEDELCNAAWLVFANKQDLPEAMSAAEITEKLGLHSIRNRPWFIQATCATSGEG 165
Query: 161 IKESVEWLVEVMERS 175
+ E +EWL ++ S
Sbjct: 166 LYEGLEWLSNCLKNS 180
>pdb|2AL7|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 10c
Length = 186
Score = 105 bits (263), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 51/148 (34%), Positives = 90/148 (60%), Gaps = 4/148 (2%)
Query: 26 KSVYSNV--EGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAV 83
K+ + NV G + ++PTVG N+ ++ N + WD+GGQP RS+WE+Y +A+
Sbjct: 35 KTTFVNVIASGQFSEDMIPTVGFNMRKVTKGNVTIKIWDIGGQPRFRSMWERYCRGVNAI 94
Query: 84 VFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAVSADELARYLDLKKL 143
V++IDAA + E S+ L +L LQG P+L+L NK+DLP+A+ +L ++L +
Sbjct: 95 VYMIDAADREKIEASRNELHNLLDKPQLQGIPVLVLGNKRDLPNALDEKQLIEKMNLSAI 154
Query: 144 DER-VCMFEAVSGYDGFGIKESVEWLVE 170
+R +C + ++S + I +++WL++
Sbjct: 155 QDREICCY-SISCKEKDNIDITLQWLIQ 181
>pdb|1RRG|A Chain A, Non-Myristoylated Rat Adp-Ribosylation Factor-1 Complexed
With Gdp, Dimeric Crystal Form
pdb|1RRG|B Chain B, Non-Myristoylated Rat Adp-Ribosylation Factor-1 Complexed
With Gdp, Dimeric Crystal Form
pdb|1R8Q|A Chain A, Full-Length Arf1-Gdp-Mg In Complex With Brefeldin A And A
Sec7 Domain
pdb|1R8Q|B Chain B, Full-Length Arf1-Gdp-Mg In Complex With Brefeldin A And A
Sec7 Domain
pdb|1RRF|A Chain A, Non-Myristoylated Rat Adp-Ribosylation Factor-1 Complexed
With Gdp, Monomeric Crystal Form
Length = 181
Score = 105 bits (261), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 57/181 (31%), Positives = 94/181 (51%), Gaps = 5/181 (2%)
Query: 1 MFSLFYGLWKYIFTKTEFHTLLEKLKSVYSN--VEGLPPDRIV---PTVGLNIGRIEVSN 55
M ++F L+K +F K E L+ L + + L IV PT+G N+ +E N
Sbjct: 1 MGNIFANLFKGLFGKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN 60
Query: 56 SKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAP 115
WD+GGQ +R +W Y++ ++FV+D+ R +++ L ++L ++L+ A
Sbjct: 61 ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAV 120
Query: 116 LLILANKQDLPDAVSADELARYLDLKKLDERVCMFEAVSGYDGFGIKESVEWLVEVMERS 175
LL+ ANKQDLP+A++A E+ L L L R +A G G+ E ++WL +
Sbjct: 121 LLVFANKQDLPNAMNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLSNQLRNQ 180
Query: 176 K 176
K
Sbjct: 181 K 181
>pdb|2B6H|A Chain A, Structure Of Human Adp-Ribosylation Factor 5
Length = 192
Score = 103 bits (258), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 48/137 (35%), Positives = 79/137 (57%), Gaps = 2/137 (1%)
Query: 41 VPTVGLNIGRIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKT 100
+PT+G N+ +E N WD+GGQ +R +W Y++ ++FV+D+ R ++S
Sbjct: 58 IPTIGFNVETVEYKNICFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVQESAD 117
Query: 101 ALEKVLRNEDLQGAPLLILANKQDLPDAVSADELARYLDLKKLDERVCMFEAVSGYDGFG 160
L+K+L+ ++L+ A LL+ ANKQD+P+A+ EL L L+ L R +A G G
Sbjct: 118 ELQKMLQEDELRDAVLLVFANKQDMPNAMPVSELTDKLGLQHLRSRTWYVQATCATQGTG 177
Query: 161 IKESVEWLVEVMERSKR 177
+ + ++WL E SKR
Sbjct: 178 LYDGLDWLSH--ELSKR 192
>pdb|1HUR|A Chain A, Human Adp-Ribosylation Factor 1 Complexed With Gdp, Full
Length Non-Myristoylated
pdb|1HUR|B Chain B, Human Adp-Ribosylation Factor 1 Complexed With Gdp, Full
Length Non-Myristoylated
Length = 180
Score = 103 bits (258), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 56/179 (31%), Positives = 93/179 (51%), Gaps = 5/179 (2%)
Query: 3 SLFYGLWKYIFTKTEFHTLLEKLKSVYSN--VEGLPPDRIV---PTVGLNIGRIEVSNSK 57
++F L+K +F K E L+ L + + L IV PT+G N+ +E N
Sbjct: 2 NIFANLFKGLFGKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNIS 61
Query: 58 LVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLL 117
WD+GGQ +R +W Y++ ++FV+D+ R +++ L ++L ++L+ A LL
Sbjct: 62 FTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLL 121
Query: 118 ILANKQDLPDAVSADELARYLDLKKLDERVCMFEAVSGYDGFGIKESVEWLVEVMERSK 176
+ ANKQDLP+A++A E+ L L L R +A G G+ E ++WL + K
Sbjct: 122 VFANKQDLPNAMNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLSNQLRNQK 180
>pdb|3DOE|A Chain A, Complex Of Arl2 And Bart, Crystal Form 1
pdb|3DOF|A Chain A, Complex Of Arl2 And Bart, Crystal Form 2
Length = 192
Score = 102 bits (255), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 51/144 (35%), Positives = 78/144 (54%)
Query: 27 SVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFV 86
++ G D I PT+G NI +E KL WD+GGQ LRS W Y+E +++V
Sbjct: 31 TILKKFNGEDIDTISPTLGFNIKTLEHRGFKLNIWDVGGQKSLRSYWRNYFESTDGLIWV 90
Query: 87 IDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAVSADELARYLDLKKLDER 146
+D+A R +D + L+ +L E L GA LLI ANKQDLP A+S++ + L+L +
Sbjct: 91 VDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDLPGALSSNAIREVLELDSIRSH 150
Query: 147 VCMFEAVSGYDGFGIKESVEWLVE 170
+ S G + ++WL++
Sbjct: 151 HWCIQGCSAVTGENLLPGIDWLLD 174
>pdb|1R4A|A Chain A, Crystal Structure Of Gtp-Bound Adp-Ribosylation Factor
Like Protein 1 (Arl1) And Grip Domain Of Golgin245
Complex
pdb|1R4A|B Chain B, Crystal Structure Of Gtp-Bound Adp-Ribosylation Factor
Like Protein 1 (Arl1) And Grip Domain Of Golgin245
Complex
pdb|1R4A|C Chain C, Crystal Structure Of Gtp-Bound Adp-Ribosylation Factor
Like Protein 1 (Arl1) And Grip Domain Of Golgin245
Complex
pdb|1R4A|D Chain D, Crystal Structure Of Gtp-Bound Adp-Ribosylation Factor
Like Protein 1 (Arl1) And Grip Domain Of Golgin245
Complex
Length = 165
Score = 102 bits (255), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 50/133 (37%), Positives = 75/133 (56%)
Query: 41 VPTVGLNIGRIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKT 100
+PT+G N+ + N K WDLGGQ +R W YY AV++V+D+ R SK+
Sbjct: 31 IPTIGFNVETVTYKNLKFQVWDLGGQTSIRPYWRCYYSNTDAVIYVVDSCDRDRIGISKS 90
Query: 101 ALEKVLRNEDLQGAPLLILANKQDLPDAVSADELARYLDLKKLDERVCMFEAVSGYDGFG 160
L +L E+L+ A L++ ANKQD+ A++ E+A L L L +R S G G
Sbjct: 91 ELVAMLEEEELRKAILVVFANKQDMEQAMTPSEMANALGLPALKDRKWQIFKTSATKGTG 150
Query: 161 IKESVEWLVEVME 173
+ E++EWLVE ++
Sbjct: 151 LDEAMEWLVETLK 163
>pdb|1KSG|A Chain A, Complex Of Arl2 And Pde Delta, Crystal Form 1
Length = 186
Score = 102 bits (253), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 51/144 (35%), Positives = 77/144 (53%)
Query: 27 SVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFV 86
++ G D I PT+G NI +E KL WD+GGQ LRS W Y+E +++V
Sbjct: 33 TILKKFNGEDVDTISPTLGFNIKTLEHRGFKLNIWDVGGQKSLRSYWRNYFESTDGLIWV 92
Query: 87 IDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAVSADELARYLDLKKLDER 146
+D+A R +D + L+ +L E L GA LLI ANKQDLP A+S + + L+L +
Sbjct: 93 VDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDLPGALSCNAIQEALELDSIRSH 152
Query: 147 VCMFEAVSGYDGFGIKESVEWLVE 170
+ S G + ++WL++
Sbjct: 153 HWRIQGCSAVTGEDLLPGIDWLLD 176
>pdb|1RE0|A Chain A, Structure Of Arf1-Gdp Bound To Sec7 Domain Complexed With
Brefeldin A
pdb|1R8S|A Chain A, Arf1[delta1-17]-Gdp In Complex With A Sec7 Domain Carrying
The Mutation Of The Catalytic Glutamate To Lysine
pdb|1S9D|A Chain A, Arf1[delta 1-17]-Gdp-Mg In Complex With Brefeldin A And A
Sec7 Domain
pdb|1U81|A Chain A, Delta-17 Human Adp Ribosylation Factor 1 Complexed With
Gdp
Length = 164
Score = 101 bits (252), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 45/136 (33%), Positives = 76/136 (55%)
Query: 41 VPTVGLNIGRIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKT 100
+PT+G N+ +E N WD+GGQ +R +W Y++ ++FV+D+ R +++
Sbjct: 29 IPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEARE 88
Query: 101 ALEKVLRNEDLQGAPLLILANKQDLPDAVSADELARYLDLKKLDERVCMFEAVSGYDGFG 160
L ++L ++L+ A LL+ ANKQDLP+A++A E+ L L L R +A G G
Sbjct: 89 ELMRMLAEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRHRNWYIQATCATSGDG 148
Query: 161 IKESVEWLVEVMERSK 176
+ E ++WL + K
Sbjct: 149 LYEGLDWLSNQLRNQK 164
>pdb|1KSH|A Chain A, Complex Of Arl2 And Pde Delta, Crystal Form 2 (Native)
Length = 186
Score = 101 bits (252), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 51/144 (35%), Positives = 77/144 (53%)
Query: 27 SVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFV 86
++ G D I PT+G NI +E KL WD+GGQ LRS W Y+E +++V
Sbjct: 33 TILKKFNGEDVDTISPTLGFNIKTLEHRGFKLNIWDVGGQKSLRSYWRNYFESTDGLIWV 92
Query: 87 IDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAVSADELARYLDLKKLDER 146
+D+A R +D + L+ +L E L GA LLI ANKQDLP A+S + + L+L +
Sbjct: 93 VDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDLPGALSXNAIQEALELDSIRSH 152
Query: 147 VCMFEAVSGYDGFGIKESVEWLVE 170
+ S G + ++WL++
Sbjct: 153 HWRIQGCSAVTGEDLLPGIDWLLD 176
>pdb|1Z6X|A Chain A, Structure Of Human Adp-Ribosylation Factor 4
pdb|1Z6X|B Chain B, Structure Of Human Adp-Ribosylation Factor 4
Length = 180
Score = 101 bits (251), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 48/137 (35%), Positives = 79/137 (57%), Gaps = 2/137 (1%)
Query: 41 VPTVGLNIGRIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKT 100
+PT+G N+ +E N WD+GGQ +R +W+ Y++ ++FV+D+ R ++
Sbjct: 46 IPTIGFNVETVEYKNICFTVWDVGGQDRIRPLWKHYFQNTQGLIFVVDSNDRERIQEVAD 105
Query: 101 ALEKVLRNEDLQGAPLLILANKQDLPDAVSADELARYLDLKKLDERVCMFEAVSGYDGFG 160
L+K+L ++L+ A LL+ ANKQDLP+A++ E+ L L+ L R +A G G
Sbjct: 106 ELQKMLLVDELRDAVLLLFANKQDLPNAMAISEMTDKLGLQSLRNRTWYVQATCATQGTG 165
Query: 161 IKESVEWLVEVMERSKR 177
+ E ++WL E SKR
Sbjct: 166 LYEGLDWLSN--ELSKR 180
>pdb|3AQ4|A Chain A, Molecular Insights Into Plant Cell Proliferation
Disturbance By Agrobacterium Protein 6b
pdb|3AQ4|B Chain B, Molecular Insights Into Plant Cell Proliferation
Disturbance By Agrobacterium Protein 6b
Length = 184
Score = 100 bits (250), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 43/128 (33%), Positives = 75/128 (58%)
Query: 41 VPTVGLNIGRIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKT 100
+PT+G N+ +E N WD+GGQ +R +W Y++ ++FV+D+ R +++
Sbjct: 49 IPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARD 108
Query: 101 ALEKVLRNEDLQGAPLLILANKQDLPDAVSADELARYLDLKKLDERVCMFEAVSGYDGFG 160
L ++L ++L+ A LL+ ANKQDLP+A++A E+ L L L +R ++ G G
Sbjct: 109 ELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEG 168
Query: 161 IKESVEWL 168
+ E ++WL
Sbjct: 169 LYEGLDWL 176
>pdb|3O47|A Chain A, Crystal Structure Of Arfgap1-Arf1 Fusion Protein
pdb|3O47|B Chain B, Crystal Structure Of Arfgap1-Arf1 Fusion Protein
Length = 329
Score = 100 bits (250), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 45/136 (33%), Positives = 76/136 (55%)
Query: 41 VPTVGLNIGRIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKT 100
+PT+G N+ +E N WD+GGQ +R +W Y++ ++FV+D+ R +++
Sbjct: 194 IPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEARE 253
Query: 101 ALEKVLRNEDLQGAPLLILANKQDLPDAVSADELARYLDLKKLDERVCMFEAVSGYDGFG 160
L ++L ++L+ A LL+ ANKQDLP+A++A E+ L L L R +A G G
Sbjct: 254 ELMRMLAEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRHRNWYIQATCATSGDG 313
Query: 161 IKESVEWLVEVMERSK 176
+ E ++WL + K
Sbjct: 314 LYEGLDWLSNQLRNQK 329
>pdb|1Z6Y|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 5
pdb|1Z6Y|B Chain B, Structure Of Human Adp-Ribosylation Factor-Like 5
Length = 179
Score = 100 bits (250), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 44/128 (34%), Positives = 76/128 (59%)
Query: 42 PTVGLNIGRIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTA 101
PT+G N+ I ++N++ + WD+GGQ LRS W YY V+ V+D+ R ++
Sbjct: 46 PTIGSNVEEIVINNTRFLMWDIGGQESLRSSWNTYYTNTEFVIVVVDSTDRERISVTREE 105
Query: 102 LEKVLRNEDLQGAPLLILANKQDLPDAVSADELARYLDLKKLDERVCMFEAVSGYDGFGI 161
L K+L +EDL+ A LLI ANKQD+ + ++ E++++L L + + +A G G+
Sbjct: 106 LYKMLAHEDLRKAGLLIFANKQDVKECMTVAEISQFLKLTSIKDHQWHIQACCALTGEGL 165
Query: 162 KESVEWLV 169
+ +EW++
Sbjct: 166 CQGLEWMM 173
>pdb|1ZJ6|A Chain A, Crystal Structure Of Human Arl5
Length = 187
Score = 100 bits (249), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 44/128 (34%), Positives = 76/128 (59%)
Query: 42 PTVGLNIGRIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTA 101
PT+G N+ I ++N++ + WD+GGQ LRS W YY V+ V+D+ R ++
Sbjct: 46 PTIGSNVEEIVINNTRFLMWDIGGQESLRSSWNTYYTNTEFVIVVVDSTDRERISVTREE 105
Query: 102 LEKVLRNEDLQGAPLLILANKQDLPDAVSADELARYLDLKKLDERVCMFEAVSGYDGFGI 161
L K+L +EDL+ A LLI ANKQD+ + ++ E++++L L + + +A G G+
Sbjct: 106 LYKMLAHEDLRKAGLLIFANKQDVKECMTVAEISQFLKLTSIKDHQWHIQACCALTGEGL 165
Query: 162 KESVEWLV 169
+ +EW++
Sbjct: 166 CQGLEWMM 173
>pdb|1KSJ|A Chain A, Complex Of Arl2 And Pde Delta, Crystal Form 2 (Semet)
Length = 186
Score = 100 bits (249), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 51/144 (35%), Positives = 77/144 (53%)
Query: 27 SVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFV 86
++ G D I PT+G NI +E KL WD+GGQ LRS W Y+E +++V
Sbjct: 33 TILKKFNGEDVDTISPTLGFNIKTLEHRGFKLNIWDVGGQKSLRSYWRNYFESTDGLIWV 92
Query: 87 IDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAVSADELARYLDLKKLDER 146
+D+A R +D + L+ +L E L GA LLI ANKQDLP A+S + + L+L +
Sbjct: 93 VDSADRQRXQDCQRELQSLLVEERLAGATLLIFANKQDLPGALSXNAIQEALELDSIRSH 152
Query: 147 VCMFEAVSGYDGFGIKESVEWLVE 170
+ S G + ++WL++
Sbjct: 153 HWRIQGCSAVTGEDLLPGIDWLLD 176
>pdb|4DCN|A Chain A, Crystal Structure Analysis Of The Arfaptin2 Bar Domain In
Complex With Arl1
pdb|4DCN|B Chain B, Crystal Structure Analysis Of The Arfaptin2 Bar Domain In
Complex With Arl1
Length = 166
Score = 100 bits (249), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 49/133 (36%), Positives = 75/133 (56%)
Query: 41 VPTVGLNIGRIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKT 100
+PT+G N+ + N K WDLGG +R W YY AV++V+D+ R SK+
Sbjct: 33 IPTIGFNVETVTYKNLKFQVWDLGGLTSIRPYWRCYYSNTDAVIYVVDSCDRDRIGISKS 92
Query: 101 ALEKVLRNEDLQGAPLLILANKQDLPDAVSADELARYLDLKKLDERVCMFEAVSGYDGFG 160
L +L E+L+ A L++ ANKQD+ A+++ E+A L L L +R S G G
Sbjct: 93 ELVAMLEEEELRKAILVVFANKQDMEQAMTSSEMANSLGLPALKDRKWQIFKTSATKGTG 152
Query: 161 IKESVEWLVEVME 173
+ E++EWLVE ++
Sbjct: 153 LDEAMEWLVETLK 165
>pdb|3RD1|A Chain A, Structure Of An Adp Ribosylation Factor From Entamoeba
Histolytica Hm- 1:imss Bound To Mg-Gdp
pdb|3RD1|B Chain B, Structure Of An Adp Ribosylation Factor From Entamoeba
Histolytica Hm- 1:imss Bound To Mg-Gdp
Length = 178
Score = 100 bits (249), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 43/130 (33%), Positives = 74/130 (56%)
Query: 41 VPTVGLNIGRIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKT 100
+PT+G N+ +E N WD+GGQ +R +W YY+ A++FV+D+ R +++
Sbjct: 46 IPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYYQNTQAIIFVVDSNDRDRIGEARE 105
Query: 101 ALEKVLRNEDLQGAPLLILANKQDLPDAVSADELARYLDLKKLDERVCMFEAVSGYDGFG 160
L K+L ++++ A LL+ ANK DLP A+S E+ L L+ + R + +G G
Sbjct: 106 ELMKMLNEDEMRNAILLVFANKHDLPQAMSISEVTEKLGLQTIKNRKWYCQTSCATNGDG 165
Query: 161 IKESVEWLVE 170
+ E ++WL +
Sbjct: 166 LYEGLDWLAD 175
>pdb|2H16|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 5 (Arl5)
pdb|2H16|B Chain B, Structure Of Human Adp-Ribosylation Factor-Like 5 (Arl5)
pdb|2H16|C Chain C, Structure Of Human Adp-Ribosylation Factor-Like 5 (Arl5)
pdb|2H16|D Chain D, Structure Of Human Adp-Ribosylation Factor-Like 5 (Arl5)
Length = 183
Score = 100 bits (248), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 44/128 (34%), Positives = 76/128 (59%)
Query: 42 PTVGLNIGRIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTA 101
PT+G N+ I ++N++ + WD+GGQ LRS W YY V+ V+D+ R ++
Sbjct: 52 PTIGSNVEEIVINNTRFLMWDIGGQESLRSSWNTYYTNTEFVIVVVDSTDRERISVTREE 111
Query: 102 LEKVLRNEDLQGAPLLILANKQDLPDAVSADELARYLDLKKLDERVCMFEAVSGYDGFGI 161
L K+L +EDL+ A LLI ANKQD+ + ++ E++++L L + + +A G G+
Sbjct: 112 LYKMLAHEDLRKAGLLIFANKQDVKECMTVAEISQFLKLTSIKDHQWHIQACCALTGEGL 171
Query: 162 KESVEWLV 169
+ +EW++
Sbjct: 172 CQGLEWMM 179
>pdb|2H17|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 5 (Arl5)
(Casp Target)
Length = 181
Score = 100 bits (248), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 44/128 (34%), Positives = 76/128 (59%)
Query: 42 PTVGLNIGRIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTA 101
PT+G N+ I ++N++ + WD+GGQ LRS W YY V+ V+D+ R ++
Sbjct: 51 PTIGSNVEEIVINNTRFLMWDIGGQESLRSSWNTYYTNTEFVIVVVDSTDRERISVTREE 110
Query: 102 LEKVLRNEDLQGAPLLILANKQDLPDAVSADELARYLDLKKLDERVCMFEAVSGYDGFGI 161
L K+L +EDL+ A LLI ANKQD+ + ++ E++++L L + + +A G G+
Sbjct: 111 LYKMLAHEDLRKAGLLIFANKQDVKECMTVAEISQFLKLTSIKDHQWHIQACCALTGEGL 170
Query: 162 KESVEWLV 169
+ +EW++
Sbjct: 171 CQGLEWMM 178
>pdb|2A5D|A Chain A, Structural Basis For The Activation Of Cholera Toxin By
Human Arf6-Gtp
pdb|2A5F|A Chain A, Cholera Toxin A1 Subunit Bound To Its Substrate, Nad+, And
Its Human Protein Activator, Arf6
pdb|2J5X|A Chain A, Structure Of The Small G Protein Arf6 In Complex With
Gtpgammas
pdb|2J5X|B Chain B, Structure Of The Small G Protein Arf6 In Complex With
Gtpgammas
Length = 175
Score = 99.8 bits (247), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 43/129 (33%), Positives = 72/129 (55%)
Query: 41 VPTVGLNIGRIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKT 100
+PTVG N+ + N K WD+GGQ +R +W YY ++FV+D A R ++++
Sbjct: 42 IPTVGFNVETVTYKNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQ 101
Query: 101 ALEKVLRNEDLQGAPLLILANKQDLPDAVSADELARYLDLKKLDERVCMFEAVSGYDGFG 160
L +++ + +++ A +LI ANKQDLPDA+ E+ L L ++ +R + G G
Sbjct: 102 ELHRIINDREMRDAIILIFANKQDLPDAMKPHEIQEKLGLTRIRDRNWYVQPSCATSGDG 161
Query: 161 IKESVEWLV 169
+ E + WL
Sbjct: 162 LYEGLTWLT 170
>pdb|1E0S|A Chain A, Small G Protein Arf6-Gdp
Length = 174
Score = 99.4 bits (246), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 43/129 (33%), Positives = 72/129 (55%)
Query: 41 VPTVGLNIGRIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKT 100
+PTVG N+ + N K WD+GGQ +R +W YY ++FV+D A R ++++
Sbjct: 41 IPTVGFNVETVTYKNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQ 100
Query: 101 ALEKVLRNEDLQGAPLLILANKQDLPDAVSADELARYLDLKKLDERVCMFEAVSGYDGFG 160
L +++ + +++ A +LI ANKQDLPDA+ E+ L L ++ +R + G G
Sbjct: 101 ELHRIINDREMRDAIILIFANKQDLPDAMKPHEIQEKLGLTRIRDRNWYVQPSCATSGDG 160
Query: 161 IKESVEWLV 169
+ E + WL
Sbjct: 161 LYEGLTWLT 169
>pdb|1YZG|A Chain A, Structure Of Human Adp-ribosylation Factor-like 8
Length = 179
Score = 99.4 bits (246), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 44/127 (34%), Positives = 73/127 (57%)
Query: 42 PTVGLNIGRIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTA 101
PT+G N+ I V N+ + WD+GGQ LRS W YY ++ V+D+ R +K
Sbjct: 46 PTIGSNVEEIVVKNTHFLMWDIGGQESLRSSWNTYYSNTEFIILVVDSIDRERLAITKEE 105
Query: 102 LEKVLRNEDLQGAPLLILANKQDLPDAVSADELARYLDLKKLDERVCMFEAVSGYDGFGI 161
L ++L +EDL+ A +LI ANKQD+ ++A E+++YL L + + ++ G G+
Sbjct: 106 LYRMLAHEDLRKAAVLIFANKQDMKGCMTAAEISKYLTLSSIKDHPWHIQSCCALTGEGL 165
Query: 162 KESVEWL 168
+ +EW+
Sbjct: 166 CQGLEWM 172
>pdb|3N5C|A Chain A, Crystal Structure Of Arf6delta13 Complexed With Gdp
pdb|3N5C|B Chain B, Crystal Structure Of Arf6delta13 Complexed With Gdp
Length = 162
Score = 99.4 bits (246), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 43/129 (33%), Positives = 72/129 (55%)
Query: 41 VPTVGLNIGRIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKT 100
+PTVG N+ + N K WD+GGQ +R +W YY ++FV+D A R ++++
Sbjct: 29 IPTVGFNVETVTYKNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQ 88
Query: 101 ALEKVLRNEDLQGAPLLILANKQDLPDAVSADELARYLDLKKLDERVCMFEAVSGYDGFG 160
L +++ + +++ A +LI ANKQDLPDA+ E+ L L ++ +R + G G
Sbjct: 89 ELHRIINDREMRDAIILIFANKQDLPDAMKPHEIQEKLGLTRIRDRNWYVQPSCATSGDG 148
Query: 161 IKESVEWLV 169
+ E + WL
Sbjct: 149 LYEGLTWLT 157
>pdb|4FME|C Chain C, Espg-Rab1-Arf6 Complex
pdb|4FME|F Chain F, Espg-Rab1-Arf6 Complex
Length = 160
Score = 99.4 bits (246), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 43/129 (33%), Positives = 72/129 (55%)
Query: 41 VPTVGLNIGRIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKT 100
+PTVG N+ + N K WD+GGQ +R +W YY ++FV+D A R ++++
Sbjct: 29 IPTVGFNVETVTYKNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQ 88
Query: 101 ALEKVLRNEDLQGAPLLILANKQDLPDAVSADELARYLDLKKLDERVCMFEAVSGYDGFG 160
L +++ + +++ A +LI ANKQDLPDA+ E+ L L ++ +R + G G
Sbjct: 89 ELHRIINDREMRDAIILIFANKQDLPDAMKPHEIQEKLGLTRIRDRNWYVQPSCATSGDG 148
Query: 161 IKESVEWLV 169
+ E + WL
Sbjct: 149 LYEGLTWLT 157
>pdb|4GOK|B Chain B, The Crystal Structure Of Arl2gppnhp In Complex With
Unc119a
pdb|4GOK|A Chain A, The Crystal Structure Of Arl2gppnhp In Complex With
Unc119a
Length = 169
Score = 98.6 bits (244), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 50/144 (34%), Positives = 76/144 (52%)
Query: 27 SVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFV 86
++ G D I PT+G NI +E KL WD+GG LRS W Y+E +++V
Sbjct: 16 TILKKFNGEDVDTISPTLGFNIKTLEHRGFKLNIWDVGGLKSLRSYWRNYFESTDGLIWV 75
Query: 87 IDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAVSADELARYLDLKKLDER 146
+D+A R +D + L+ +L E L GA LLI ANKQDLP A+S + + L+L +
Sbjct: 76 VDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDLPGALSCNAIQEALELDSIRSH 135
Query: 147 VCMFEAVSGYDGFGIKESVEWLVE 170
+ S G + ++WL++
Sbjct: 136 HWRIQGCSAVTGEDLLPGIDWLLD 159
>pdb|1J2J|A Chain A, Crystal Structure Of Gga1 Gat N-terminal Region In Complex
With Arf1 Gtp Form
pdb|1O3Y|A Chain A, Crystal Structure Of Mouse Arf1 (Delta17-Q71l), Gtp Form
pdb|1O3Y|B Chain B, Crystal Structure Of Mouse Arf1 (Delta17-Q71l), Gtp Form
pdb|2J59|A Chain A, Crystal Structure Of The Arf1:arhgap21-Arfbd Complex
pdb|2J59|B Chain B, Crystal Structure Of The Arf1:arhgap21-Arfbd Complex
pdb|2J59|C Chain C, Crystal Structure Of The Arf1:arhgap21-Arfbd Complex
pdb|2J59|D Chain D, Crystal Structure Of The Arf1:arhgap21-Arfbd Complex
pdb|2J59|E Chain E, Crystal Structure Of The Arf1:arhgap21-Arfbd Complex
pdb|2J59|F Chain F, Crystal Structure Of The Arf1:arhgap21-Arfbd Complex
Length = 166
Score = 98.6 bits (244), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 44/136 (32%), Positives = 75/136 (55%)
Query: 41 VPTVGLNIGRIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKT 100
+PT+G N+ +E N WD+GG +R +W Y++ ++FV+D+ R +++
Sbjct: 31 IPTIGFNVETVEYKNISFTVWDVGGLDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEARE 90
Query: 101 ALEKVLRNEDLQGAPLLILANKQDLPDAVSADELARYLDLKKLDERVCMFEAVSGYDGFG 160
L ++L ++L+ A LL+ ANKQDLP+A++A E+ L L L R +A G G
Sbjct: 91 ELMRMLAEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRHRNWYIQATCATSGDG 150
Query: 161 IKESVEWLVEVMERSK 176
+ E ++WL + K
Sbjct: 151 LYEGLDWLSNQLRNQK 166
>pdb|3LVQ|E Chain E, The Crystal Structure Of Asap3 In Complex With Arf6 In
Trans State
pdb|3LVR|E Chain E, The Crystal Structure Of Asap3 In Complex With Arf6 In
Trans State Soaked With Calcium
Length = 497
Score = 98.2 bits (243), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 43/129 (33%), Positives = 72/129 (55%)
Query: 41 VPTVGLNIGRIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKT 100
+PTVG N+ + N K WD+GGQ +R +W YY ++FV+D A R ++++
Sbjct: 351 IPTVGFNVETVTYKNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQ 410
Query: 101 ALEKVLRNEDLQGAPLLILANKQDLPDAVSADELARYLDLKKLDERVCMFEAVSGYDGFG 160
L +++ + +++ A +LI ANKQDLPDA+ E+ L L ++ +R + G G
Sbjct: 411 ELHRIINDREMRDAIILIFANKQDLPDAMKPHEIQEKLGLTRIRDRNWYVQPSCATSGDG 470
Query: 161 IKESVEWLV 169
+ E + WL
Sbjct: 471 LYEGLTWLT 479
>pdb|3PCR|B Chain B, Structure Of Espg-Arf6 Complex
Length = 162
Score = 97.4 bits (241), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 43/129 (33%), Positives = 70/129 (54%)
Query: 41 VPTVGLNIGRIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKT 100
+PTVG N+ + N K WD+GGQ +R +W YY ++FV+D A R ++++
Sbjct: 29 IPTVGFNVETVTYKNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQ 88
Query: 101 ALEKVLRNEDLQGAPLLILANKQDLPDAVSADELARYLDLKKLDERVCMFEAVSGYDGFG 160
L +++ + + + A +LI ANKQDLPDA E+ L L ++ +R + G G
Sbjct: 89 ELHRIINDREXRDAIILIFANKQDLPDAXKPHEIQEKLGLTRIRDRNWYVQPSCATSGDG 148
Query: 161 IKESVEWLV 169
+ E + WL
Sbjct: 149 LYEGLTWLT 157
>pdb|2A5G|A Chain A, Cholera Toxin A1 Subunit Bound To Arf6(Q67l)
Length = 175
Score = 96.3 bits (238), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 42/129 (32%), Positives = 71/129 (55%)
Query: 41 VPTVGLNIGRIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKT 100
+PTVG N+ + N K WD+GG +R +W YY ++FV+D A R ++++
Sbjct: 42 IPTVGFNVETVTYKNVKFNVWDVGGLDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQ 101
Query: 101 ALEKVLRNEDLQGAPLLILANKQDLPDAVSADELARYLDLKKLDERVCMFEAVSGYDGFG 160
L +++ + +++ A +LI ANKQDLPDA+ E+ L L ++ +R + G G
Sbjct: 102 ELHRIINDREMRDAIILIFANKQDLPDAMKPHEIQEKLGLTRIRDRNWYVQPSCATSGDG 161
Query: 161 IKESVEWLV 169
+ E + WL
Sbjct: 162 LYEGLTWLT 170
>pdb|3VHX|A Chain A, The Crystal Structure Of Arf6-Mklp1 (Mitotic Kinesin-Like
Protein 1) Complex
pdb|3VHX|C Chain C, The Crystal Structure Of Arf6-Mklp1 (Mitotic Kinesin-Like
Protein 1) Complex
pdb|3VHX|E Chain E, The Crystal Structure Of Arf6-Mklp1 (Mitotic Kinesin-Like
Protein 1) Complex
pdb|3VHX|G Chain G, The Crystal Structure Of Arf6-Mklp1 (Mitotic Kinesin-Like
Protein 1) Complex
Length = 172
Score = 96.3 bits (238), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 42/129 (32%), Positives = 71/129 (55%)
Query: 41 VPTVGLNIGRIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKT 100
+PTVG N+ + N K WD+GG +R +W YY ++FV+D A R ++++
Sbjct: 31 IPTVGFNVETVTYKNVKFNVWDVGGLDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQ 90
Query: 101 ALEKVLRNEDLQGAPLLILANKQDLPDAVSADELARYLDLKKLDERVCMFEAVSGYDGFG 160
L +++ + +++ A +LI ANKQDLPDA+ E+ L L ++ +R + G G
Sbjct: 91 ELHRIINDREMRDAIILIFANKQDLPDAMKPHEIQEKLGLTRIRDRNWYVQPSCATSGDG 150
Query: 161 IKESVEWLV 169
+ E + WL
Sbjct: 151 LYEGLTWLT 159
>pdb|2W83|A Chain A, Crystal Structure Of The Arf6 Gtpase In Complex With A
Specific Effector, Jip4
pdb|2W83|B Chain B, Crystal Structure Of The Arf6 Gtpase In Complex With A
Specific Effector, Jip4
pdb|2W83|E Chain E, Crystal Structure Of The Arf6 Gtpase In Complex With A
Specific Effector, Jip4
Length = 165
Score = 96.3 bits (238), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 42/129 (32%), Positives = 71/129 (55%)
Query: 41 VPTVGLNIGRIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKT 100
+PTVG N+ + N K WD+GG +R +W YY ++FV+D A R ++++
Sbjct: 32 IPTVGFNVETVTYKNVKFNVWDVGGLDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQ 91
Query: 101 ALEKVLRNEDLQGAPLLILANKQDLPDAVSADELARYLDLKKLDERVCMFEAVSGYDGFG 160
L +++ + +++ A +LI ANKQDLPDA+ E+ L L ++ +R + G G
Sbjct: 92 ELHRIINDREMRDAIILIFANKQDLPDAMKPHEIQEKLGLTRIRDRNWYVQPSCATSGDG 151
Query: 161 IKESVEWLV 169
+ E + WL
Sbjct: 152 LYEGLTWLT 160
>pdb|1FZQ|A Chain A, Crystal Structure Of Murine Arl3-Gdp
Length = 181
Score = 94.4 bits (233), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 50/139 (35%), Positives = 78/139 (56%)
Query: 39 RIVPTVGLNIGRIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDS 98
I PT G NI ++ KL WD+GGQ +R W Y+E +++VID+A RFE++
Sbjct: 43 HITPTQGFNIKSVQSQGFKLNVWDIGGQRKIRPYWRSYFENTDILIYVIDSADRKRFEET 102
Query: 99 KTALEKVLRNEDLQGAPLLILANKQDLPDAVSADELARYLDLKKLDERVCMFEAVSGYDG 158
L ++L E L P+LI ANKQDL A A E+A L+L + +RV ++ S G
Sbjct: 103 GQELTELLEEEKLSCVPVLIFANKQDLLTAAPASEIAEGLNLHTIRDRVWQIQSCSALTG 162
Query: 159 FGIKESVEWLVEVMERSKR 177
G+++ + W+ + + K+
Sbjct: 163 EGVQDGMNWVCKNVNAKKK 181
>pdb|4GOJ|A Chain A, The Crystal Structure Of Full Length Arl3gppnhp In Complex
With Unc119a
pdb|4GOJ|B Chain B, The Crystal Structure Of Full Length Arl3gppnhp In Complex
With Unc119a
Length = 189
Score = 94.0 bits (232), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 50/139 (35%), Positives = 78/139 (56%)
Query: 39 RIVPTVGLNIGRIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDS 98
I PT G NI ++ KL WD+GGQ +R W Y+E +++VID+A RFE++
Sbjct: 44 HITPTQGFNIKSVQSQGFKLNVWDIGGQRKIRPYWRSYFENTDILIYVIDSADRKRFEET 103
Query: 99 KTALEKVLRNEDLQGAPLLILANKQDLPDAVSADELARYLDLKKLDERVCMFEAVSGYDG 158
L ++L E L P+LI ANKQDL A A E+A L+L + +RV ++ S G
Sbjct: 104 GQELTELLEEEKLSCVPVLIFANKQDLLTAAPASEIAEGLNLHTIRDRVWQIQSCSALTG 163
Query: 159 FGIKESVEWLVEVMERSKR 177
G+++ + W+ + + K+
Sbjct: 164 EGVQDGMNWVCKNVNAKKK 182
>pdb|3BH7|A Chain A, Crystal Structure Of The Rp2-Arl3 Complex Bound To
Gdp-Alf4
Length = 164
Score = 92.8 bits (229), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 49/132 (37%), Positives = 75/132 (56%)
Query: 39 RIVPTVGLNIGRIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDS 98
I PT G NI ++ KL WD+GGQ +R W Y+E +++VID+A RFE++
Sbjct: 31 HITPTQGFNIKSVQSQGFKLNVWDIGGQRKIRPYWRSYFENTDILIYVIDSADRKRFEET 90
Query: 99 KTALEKVLRNEDLQGAPLLILANKQDLPDAVSADELARYLDLKKLDERVCMFEAVSGYDG 158
L ++L E L P+LI ANKQDL A A E+A L+L + +RV ++ S G
Sbjct: 91 GQELTELLEEEKLSCVPVLIFANKQDLLTAAPASEIAEGLNLHTIRDRVWQIQSCSALTG 150
Query: 159 FGIKESVEWLVE 170
G+++ + W+ +
Sbjct: 151 EGVQDGMNWVCK 162
>pdb|3BH6|A Chain A, Crystal Structure Of The Rp2-Arl3 Complex Bound To Gppnhp
Length = 164
Score = 89.7 bits (221), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 48/132 (36%), Positives = 74/132 (56%)
Query: 39 RIVPTVGLNIGRIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDS 98
I PT G NI ++ KL WD+GG +R W Y+E +++VID+A RFE++
Sbjct: 31 HITPTQGFNIKSVQSQGFKLNVWDIGGLRKIRPYWRSYFENTDILIYVIDSADRKRFEET 90
Query: 99 KTALEKVLRNEDLQGAPLLILANKQDLPDAVSADELARYLDLKKLDERVCMFEAVSGYDG 158
L ++L E L P+LI ANKQDL A A E+A L+L + +RV ++ S G
Sbjct: 91 GQELTELLEEEKLSCVPVLIFANKQDLLTAAPASEIAEGLNLHTIRDRVWQIQSCSALTG 150
Query: 159 FGIKESVEWLVE 170
G+++ + W+ +
Sbjct: 151 EGVQDGMNWVCK 162
>pdb|2H57|A Chain A, Crystal Structure Of Human Adp-Ribosylation Factor-Like 6
pdb|2H57|B Chain B, Crystal Structure Of Human Adp-Ribosylation Factor-Like 6
pdb|2H57|C Chain C, Crystal Structure Of Human Adp-Ribosylation Factor-Like 6
Length = 190
Score = 89.4 bits (220), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 52/162 (32%), Positives = 96/162 (59%), Gaps = 13/162 (8%)
Query: 20 TLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPGLRSIWEKYYEE 79
T++ KLK SN + I+PT+G +I + + S+ +D+ GQ R++WE YY+E
Sbjct: 36 TIINKLKP--SNAQS---QNILPTIGFSIEKFKSSSLSFTVFDMSGQGRYRNLWEHYYKE 90
Query: 80 AHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQG--APLLILANKQDLPDAVSADELARY 137
A++FVID++ R +K L+ +L + D++ P+L ANK DL DAV++ ++++
Sbjct: 91 GQAIIFVIDSSDRLRMVVAKEELDTLLNHPDIKHRRIPILFFANKMDLRDAVTSVKVSQL 150
Query: 138 LDLKKLDER---VCMFEAVSGYDGFGIKESVEWLVEVMERSK 176
L L+ + ++ +C +A+ G G++E V+WL + ++ K
Sbjct: 151 LCLENIKDKPWHICASDAIKGE---GLQEGVDWLQDQIQTVK 189
>pdb|1UPT|A Chain A, Structure Of A Complex Of The Golgin-245 Grip Domain With
Arl1
pdb|1UPT|C Chain C, Structure Of A Complex Of The Golgin-245 Grip Domain With
Arl1
pdb|1UPT|E Chain E, Structure Of A Complex Of The Golgin-245 Grip Domain With
Arl1
pdb|1UPT|G Chain G, Structure Of A Complex Of The Golgin-245 Grip Domain With
Arl1
Length = 171
Score = 87.8 bits (216), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 49/133 (36%), Positives = 70/133 (52%)
Query: 41 VPTVGLNIGRIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKT 100
+PT+G N+ + N K WDLGG +R W YY AV++V+D+ R SK+
Sbjct: 36 IPTIGFNVETVTYKNLKFQVWDLGGLTSIRPYWRCYYSNTDAVIYVVDSCDRDRIGISKS 95
Query: 101 ALEKVLRNEDLQGAPLLILANKQDLPDAVSADELARYLDLKKLDERVCMFEAVSGYDGFG 160
L L E+L+ A L++ ANKQD A ++ E A L L L +R S G G
Sbjct: 96 ELVAXLEEEELRKAILVVFANKQDXEQAXTSSEXANSLGLPALKDRKWQIFKTSATKGTG 155
Query: 161 IKESVEWLVEVME 173
+ E+ EWLVE ++
Sbjct: 156 LDEAXEWLVETLK 168
>pdb|2X77|A Chain A, Crystal Structure Of Leishmania Major Adp Ribosylation
Factor-Like 1.
pdb|2X77|B Chain B, Crystal Structure Of Leishmania Major Adp Ribosylation
Factor-Like 1
Length = 189
Score = 87.4 bits (215), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 46/124 (37%), Positives = 68/124 (54%)
Query: 47 NIGRIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVL 106
N+ ++ N WDLGGQ G+R W Y+ + AV++V+D+ R +K L +L
Sbjct: 57 NLETLQYKNISFEVWDLGGQTGVRPYWRCYFSDTDAVIYVVDSTDRDRMGVAKHELYALL 116
Query: 107 RNEDLQGAPLLILANKQDLPDAVSADELARYLDLKKLDERVCMFEAVSGYDGFGIKESVE 166
++L+ + LLI ANKQDLPDA S E+A L + + R S G G+ E ++
Sbjct: 117 DEDELRKSLLLIFANKQDLPDAASEAEIAEQLGVSSIMNRTWTIVKSSSKTGDGLVEGMD 176
Query: 167 WLVE 170
WLVE
Sbjct: 177 WLVE 180
>pdb|4BAS|A Chain A, Structure Of The Arl6 Bbs3 Small Gtpase From Trypanosoma
Brucei With Bound Nucleotide Analogue Gppnp
Length = 199
Score = 82.4 bits (202), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 52/164 (31%), Positives = 79/164 (48%), Gaps = 15/164 (9%)
Query: 20 TLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPGLRSIWEKYYEE 79
T++ ++K S+ + I TVG N+ E +D+GG R +WE YY+
Sbjct: 32 TIINQVKPAQSSSK-----HITATVGYNVETFEKGRVAFTVFDMGGAKKFRGLWETYYDN 86
Query: 80 AHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQ-------GAPLLILANKQDLPDAVSAD 132
AV+FV+D++ R K+ ++ +L++ED++ P L ANK D A +A
Sbjct: 87 IDAVIFVVDSSDHLRLCVVKSEIQAMLKHEDIRRELPGGGRVPFLFFANKMDAAGAKTAA 146
Query: 133 ELARYLDLKKL--DERVCMFEAVSGYDGFGIKESVEWLVEVMER 174
EL LDL L D +F A +G G G+ E WL E R
Sbjct: 147 ELVEILDLTTLMGDHPFVIF-ASNGLKGTGVHEGFSWLQETASR 189
>pdb|2QTV|B Chain B, Structure Of Sec23-Sar1 Complexed With The Active Fragment
Of Sec31
Length = 167
Score = 73.6 bits (179), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 34/90 (37%), Positives = 54/90 (60%)
Query: 51 IEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNED 110
+ + N K +DLGG R +W+ Y+ E + +VF++DAA P RF++++ L+ + +
Sbjct: 40 LAIGNIKFTTFDLGGHIQARRLWKDYFPEVNGIVFLVDAADPERFDEARVELDALFNIAE 99
Query: 111 LQGAPLLILANKQDLPDAVSADELARYLDL 140
L+ P +IL NK D P+AVS EL L L
Sbjct: 100 LKDVPFVILGNKIDAPNAVSEAELRSALGL 129
>pdb|1M2O|B Chain B, Crystal Structure Of The Sec23-Sar1 Complex
pdb|1M2O|D Chain D, Crystal Structure Of The Sec23-Sar1 Complex
Length = 190
Score = 73.2 bits (178), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 34/90 (37%), Positives = 54/90 (60%)
Query: 51 IEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNED 110
+ + N K +DLGG R +W+ Y+ E + +VF++DAA P RF++++ L+ + +
Sbjct: 62 LAIGNIKFTTFDLGGHIQARRLWKDYFPEVNGIVFLVDAADPERFDEARVELDALFNIAE 121
Query: 111 LQGAPLLILANKQDLPDAVSADELARYLDL 140
L+ P +IL NK D P+AVS EL L L
Sbjct: 122 LKDVPFVILGNKIDAPNAVSEAELRSALGL 151
>pdb|2GAO|A Chain A, Crystal Structure Of Human Sar1a In Complex With Gdp
pdb|2GAO|B Chain B, Crystal Structure Of Human Sar1a In Complex With Gdp
Length = 208
Score = 65.9 bits (159), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 35/109 (32%), Positives = 56/109 (51%), Gaps = 3/109 (2%)
Query: 35 LPPDRI---VPTVGLNIGRIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAAC 91
L DR+ VPT+ + ++ +DLGG R +W+ Y + +VF++D A
Sbjct: 55 LKDDRLGQHVPTLHPTSEELTIAGMTFTTFDLGGHEQARRVWKNYLPAINGIVFLVDCAD 114
Query: 92 PSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAVSADELARYLDL 140
SR +SK L ++ +E + P+LIL NK D DA+S ++L L
Sbjct: 115 HSRLVESKVELNALMTDETISNVPILILGNKIDRTDAISEEKLREIFGL 163
>pdb|2FMX|A Chain A, An Open Conformation Of Switch I Revealed By Sar1-gdp
Crystal Structure At Low Mg(2+)
pdb|2FMX|B Chain B, An Open Conformation Of Switch I Revealed By Sar1-gdp
Crystal Structure At Low Mg(2+)
Length = 195
Score = 64.7 bits (156), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 34/109 (31%), Positives = 56/109 (51%), Gaps = 3/109 (2%)
Query: 35 LPPDRI---VPTVGLNIGRIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAAC 91
L DR+ VPT+ + ++ +DLGG R +W+ Y + +VF++D A
Sbjct: 42 LKDDRLGQHVPTLHPTSEELTIAGMTFTTFDLGGHIQARRVWKNYLPAINGIVFLVDCAD 101
Query: 92 PSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAVSADELARYLDL 140
R +SK L+ ++ +E + P+LIL NK D P+A+S + L L
Sbjct: 102 HERLLESKEELDSLMTDETIANVPILILGNKIDRPEAISEERLREMFGL 150
>pdb|1F6B|A Chain A, Crystal Structure Of Sar1-Gdp Complex
pdb|1F6B|B Chain B, Crystal Structure Of Sar1-Gdp Complex
Length = 198
Score = 64.7 bits (156), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 34/109 (31%), Positives = 56/109 (51%), Gaps = 3/109 (2%)
Query: 35 LPPDRI---VPTVGLNIGRIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAAC 91
L DR+ VPT+ + ++ +DLGG R +W+ Y + +VF++D A
Sbjct: 45 LKDDRLGQHVPTLHPTSEELTIAGMTFTTFDLGGHIQARRVWKNYLPAINGIVFLVDCAD 104
Query: 92 PSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAVSADELARYLDL 140
R +SK L+ ++ +E + P+LIL NK D P+A+S + L L
Sbjct: 105 HERLLESKEELDSLMTDETIANVPILILGNKIDRPEAISEERLREMFGL 153
>pdb|2FA9|A Chain A, The Crystal Structure Of Sar1[h79g]-gdp Provides Insight
Into The Coat-controlled Gtp Hydrolysis In The
Disassembly Of Cop Ii
pdb|2FA9|B Chain B, The Crystal Structure Of Sar1[h79g]-gdp Provides Insight
Into The Coat-controlled Gtp Hydrolysis In The
Disassembly Of Cop Ii
Length = 189
Score = 63.9 bits (154), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 34/109 (31%), Positives = 56/109 (51%), Gaps = 3/109 (2%)
Query: 35 LPPDRI---VPTVGLNIGRIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAAC 91
L DR+ VPT+ + ++ +DLGG R +W+ Y + +VF++D A
Sbjct: 36 LKDDRLGQHVPTLHPTSEELTIAGMTFTTFDLGGGIQARRVWKNYLPAINGIVFLVDCAD 95
Query: 92 PSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAVSADELARYLDL 140
R +SK L+ ++ +E + P+LIL NK D P+A+S + L L
Sbjct: 96 HERLLESKEELDSLMTDETIANVPILILGNKIDRPEAISEERLREMFGL 144
>pdb|1Z06|A Chain A, Gppnhp-Bound Rab33 Gtpase
Length = 189
Score = 48.9 bits (115), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 32/107 (29%), Positives = 48/107 (44%), Gaps = 5/107 (4%)
Query: 28 VYSNVEGLPPDRIVPTVGLNIGR----IEVSNSKLVFWDLGGQPGLR-SIWEKYYEEAHA 82
Y G PDR T+G++ I+ K+ WD GQ R S+ + YY HA
Sbjct: 37 TYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQERFRKSMVQHYYRNVHA 96
Query: 83 VVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAV 129
VVFV D + F +E+ ++ P +++ NK DL A+
Sbjct: 97 VVFVYDMTNMASFHSLPAWIEECKQHLLANDIPRILVGNKCDLRSAI 143
>pdb|2G77|B Chain B, Crystal Structure Of Gyp1 Tbc Domain In Complex With Rab33
Gtpase Bound To Gdp And Alf3
Length = 198
Score = 48.5 bits (114), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 32/107 (29%), Positives = 48/107 (44%), Gaps = 5/107 (4%)
Query: 28 VYSNVEGLPPDRIVPTVGLNIGR----IEVSNSKLVFWDLGGQPGLR-SIWEKYYEEAHA 82
Y G PDR T+G++ I+ K+ WD GQ R S+ + YY HA
Sbjct: 46 TYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQERFRKSMVQHYYRNVHA 105
Query: 83 VVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAV 129
VVFV D + F +E+ ++ P +++ NK DL A+
Sbjct: 106 VVFVYDXTNXASFHSLPAWIEECKQHLLANDIPRILVGNKCDLRSAI 152
>pdb|2RHD|A Chain A, Crystal Structure Of Cryptosporidium Parvum Small Gtpase
Rab1a
Length = 175
Score = 48.1 bits (113), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 31/103 (30%), Positives = 51/103 (49%), Gaps = 7/103 (6%)
Query: 37 PDRIVPTVGLN--IGRIEVSNS--KLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACP 92
D + T+G++ I I + N KL WD GQ R+I YY AH ++ V D
Sbjct: 35 TDSYISTIGVDFKIRTISLENKTVKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDR 94
Query: 93 SRFEDSKTALEKVLRNEDLQGAPLLILANKQDL--PDAVSADE 133
F++ K ++++ R ++ L++ NK DL V++DE
Sbjct: 95 DSFDNVKQWIQEIDRYA-MENVNKLLVGNKCDLVSKRVVTSDE 136
>pdb|3TW8|B Chain B, Gef Domain Of Dennd 1b In Complex With Rab Gtpase Rab35
pdb|3TW8|D Chain D, Gef Domain Of Dennd 1b In Complex With Rab Gtpase Rab35
Length = 181
Score = 47.0 bits (110), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 34/148 (22%), Positives = 68/148 (45%), Gaps = 9/148 (6%)
Query: 41 VPTVGLN--IGRIEVSNSK--LVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFE 96
+ T+G++ I +E++ K L WD GQ R+I YY H V+ V D F
Sbjct: 39 ITTIGVDFKIRTVEINGEKVKLQIWDTAGQERFRTITSTYYRGTHGVIVVYDVTSAESFV 98
Query: 97 DSKTALEKVLRNEDLQGAPLLILANKQDLPDAVSADELARYLDLKKLDERVCMFEAVSGY 156
+ K L ++ N++ +++ NK D P+ + Y ++ + +FE S
Sbjct: 99 NVKRWLHEI--NQNCDDVCRILVGNKNDDPERKVVETEDAYKFAGQMG--IQLFET-SAK 153
Query: 157 DGFGIKESVEWLVEVMERSKRTEMLRAR 184
+ ++E + E++ R+K+ + + +
Sbjct: 154 ENVNVEEMFNCITELVLRAKKDNLAKQQ 181
>pdb|4FMD|F Chain F, Espg-Rab1 Complex Structure At 3.05 A
Length = 164
Score = 45.4 bits (106), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 33/109 (30%), Positives = 50/109 (45%), Gaps = 10/109 (9%)
Query: 41 VPTVGLN--IGRIEVSNS--KLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFE 96
+ T+G++ I IE+ KL WD GQ R+I YY AH ++ V D F
Sbjct: 29 ISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFN 88
Query: 97 DSKTALEKVLRNEDLQGAPLLILANKQDLP-----DAVSADELARYLDL 140
+ K L+++ R + L++ NK DL D +A E A L +
Sbjct: 89 NVKQWLQEIDRYAS-ENVNKLLVGNKCDLTTKKVVDYTTAKEFADSLGI 136
>pdb|4FMC|B Chain B, Espg-Rab1 Complex
pdb|4FMC|D Chain D, Espg-Rab1 Complex
pdb|4FMD|B Chain B, Espg-Rab1 Complex Structure At 3.05 A
pdb|4FMD|D Chain D, Espg-Rab1 Complex Structure At 3.05 A
pdb|4FME|B Chain B, Espg-Rab1-Arf6 Complex
pdb|4FME|E Chain E, Espg-Rab1-Arf6 Complex
Length = 171
Score = 45.4 bits (106), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 33/107 (30%), Positives = 49/107 (45%), Gaps = 10/107 (9%)
Query: 41 VPTVGLN--IGRIEVSNS--KLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFE 96
+ T+G++ I IE+ KL WD GQ R+I YY AH ++ V D F
Sbjct: 36 ISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFN 95
Query: 97 DSKTALEKVLRNEDLQGAPLLILANKQDLP-----DAVSADELARYL 138
+ K L+++ R + L++ NK DL D +A E A L
Sbjct: 96 NVKQWLQEIDRYAS-ENVNKLLVGNKCDLTTKKVVDYTTAKEFADSL 141
>pdb|4FMB|B Chain B, Vira-Rab1 Complex Structure
pdb|4FMB|D Chain D, Vira-Rab1 Complex Structure
pdb|4FMB|F Chain F, Vira-Rab1 Complex Structure
Length = 171
Score = 45.4 bits (106), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 33/109 (30%), Positives = 50/109 (45%), Gaps = 10/109 (9%)
Query: 41 VPTVGLN--IGRIEVSNS--KLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFE 96
+ T+G++ I IE+ KL WD GQ R+I YY AH ++ V D F
Sbjct: 36 ISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFN 95
Query: 97 DSKTALEKVLRNEDLQGAPLLILANKQDLP-----DAVSADELARYLDL 140
+ K L+++ R + L++ NK DL D +A E A L +
Sbjct: 96 NVKQWLQEIDRYAS-ENVNKLLVGNKCDLTTKKVVDYTTAKEFADSLGI 143
>pdb|2FOL|A Chain A, Crystal Structure Of Human Rab1a In Complex With Gdp
Length = 191
Score = 45.4 bits (106), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 33/109 (30%), Positives = 50/109 (45%), Gaps = 10/109 (9%)
Query: 41 VPTVGLN--IGRIEVSNS--KLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFE 96
+ T+G++ I IE+ KL WD GQ R+I YY AH ++ V D F
Sbjct: 55 ISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFN 114
Query: 97 DSKTALEKVLRNEDLQGAPLLILANKQDLP-----DAVSADELARYLDL 140
+ K L+++ R + L++ NK DL D +A E A L +
Sbjct: 115 NVKQWLQEIDRYAS-ENVNKLLVGNKCDLTTKKVVDYTTAKEFADSLGI 162
>pdb|3SFV|A Chain A, Crystal Structure Of The Gdp-Bound Rab1a S25n Mutant In
Complex With The Coiled-Coil Domain Of Lida From
Legionella Pneumophila
Length = 181
Score = 45.4 bits (106), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 33/109 (30%), Positives = 50/109 (45%), Gaps = 10/109 (9%)
Query: 41 VPTVGLN--IGRIEVSNS--KLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFE 96
+ T+G++ I IE+ KL WD GQ R+I YY AH ++ V D F
Sbjct: 46 ISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFN 105
Query: 97 DSKTALEKVLRNEDLQGAPLLILANKQDLP-----DAVSADELARYLDL 140
+ K L+++ R + L++ NK DL D +A E A L +
Sbjct: 106 NVKQWLQEIDRYAS-ENVNKLLVGNKCDLTTKKVVDYTTAKEFADSLGI 153
>pdb|3L0I|B Chain B, Complex Structure Of Sidm/drra With The Wild Type Rab1
pdb|3L0I|D Chain D, Complex Structure Of Sidm/drra With The Wild Type Rab1
Length = 199
Score = 45.1 bits (105), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 33/109 (30%), Positives = 50/109 (45%), Gaps = 10/109 (9%)
Query: 41 VPTVGLN--IGRIEVSNS--KLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFE 96
+ T+G++ I IE+ KL WD GQ R+I YY AH ++ V D F
Sbjct: 63 ISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFN 122
Query: 97 DSKTALEKVLRNEDLQGAPLLILANKQDLP-----DAVSADELARYLDL 140
+ K L+++ R + L++ NK DL D +A E A L +
Sbjct: 123 NVKQWLQEIDRYAS-ENVNKLLVGNKCDLTTKKVVDYTTAKEFADSLGI 170
>pdb|3JZA|A Chain A, Crystal Structure Of Human Rab1b In Complex With The Gef
Domain Of DrraSIDM FROM LEGIONELLA PNEUMOPHILA
pdb|3NKV|A Chain A, Crystal Structure Of Rab1b Covalently Modified With Amp At
Y77
pdb|3NKV|B Chain B, Crystal Structure Of Rab1b Covalently Modified With Amp At
Y77
pdb|4HLQ|B Chain B, Crystal Structure Of Human Rab1b Bound To Gdp And Bef3 In
Complex With The Gap Domain Of Tbc1d20 From Homo Sapiens
pdb|4HLQ|D Chain D, Crystal Structure Of Human Rab1b Bound To Gdp And Bef3 In
Complex With The Gap Domain Of Tbc1d20 From Homo Sapiens
pdb|4HLQ|F Chain F, Crystal Structure Of Human Rab1b Bound To Gdp And Bef3 In
Complex With The Gap Domain Of Tbc1d20 From Homo Sapiens
pdb|4HLQ|H Chain H, Crystal Structure Of Human Rab1b Bound To Gdp And Bef3 In
Complex With The Gap Domain Of Tbc1d20 From Homo Sapiens
pdb|4HLQ|J Chain J, Crystal Structure Of Human Rab1b Bound To Gdp And Bef3 In
Complex With The Gap Domain Of Tbc1d20 From Homo Sapiens
Length = 175
Score = 45.1 bits (105), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 32/109 (29%), Positives = 50/109 (45%), Gaps = 10/109 (9%)
Query: 41 VPTVGLN--IGRIEVSNS--KLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFE 96
+ T+G++ I IE+ KL WD GQ R+I YY AH ++ V D +
Sbjct: 39 ISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESYA 98
Query: 97 DSKTALEKVLRNEDLQGAPLLILANKQDLP-----DAVSADELARYLDL 140
+ K L+++ R + L++ NK DL D +A E A L +
Sbjct: 99 NVKQWLQEIDRYAS-ENVNKLLVGNKSDLTTKKVVDNTTAKEFADSLGI 146
>pdb|3TKL|A Chain A, Crystal Structure Of The Gtp-Bound Rab1a In Complex With
The Coiled- Coil Domain Of Lida From Legionella
Pneumophila
Length = 196
Score = 45.1 bits (105), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 33/109 (30%), Positives = 50/109 (45%), Gaps = 10/109 (9%)
Query: 41 VPTVGLN--IGRIEVSNS--KLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFE 96
+ T+G++ I IE+ KL WD GQ R+I YY AH ++ V D F
Sbjct: 46 ISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFN 105
Query: 97 DSKTALEKVLRNEDLQGAPLLILANKQDLP-----DAVSADELARYLDL 140
+ K L+++ R + L++ NK DL D +A E A L +
Sbjct: 106 NVKQWLQEIDRYAS-ENVNKLLVGNKCDLTTKKVVDYTTAKEFADSLGI 153
>pdb|4I1O|A Chain A, Crystal Structure Of The Legionella Pneumophila Gap Domain
Of Lepb In Complex With Rab1b Bound To Gdp And Bef3
pdb|4I1O|C Chain C, Crystal Structure Of The Legionella Pneumophila Gap Domain
Of Lepb In Complex With Rab1b Bound To Gdp And Bef3
pdb|4I1O|E Chain E, Crystal Structure Of The Legionella Pneumophila Gap Domain
Of Lepb In Complex With Rab1b Bound To Gdp And Bef3
pdb|4I1O|G Chain G, Crystal Structure Of The Legionella Pneumophila Gap Domain
Of Lepb In Complex With Rab1b Bound To Gdp And Bef3
Length = 181
Score = 44.7 bits (104), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 32/109 (29%), Positives = 50/109 (45%), Gaps = 10/109 (9%)
Query: 41 VPTVGLN--IGRIEVSNS--KLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFE 96
+ T+G++ I IE+ KL WD GQ R+I YY AH ++ V D +
Sbjct: 39 ISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESYA 98
Query: 97 DSKTALEKVLRNEDLQGAPLLILANKQDLP-----DAVSADELARYLDL 140
+ K L+++ R + L++ NK DL D +A E A L +
Sbjct: 99 NVKQWLQEIDRYAS-ENVNKLLVGNKSDLTTKKVVDNTTAKEFADSLGI 146
>pdb|4FMC|F Chain F, Espg-Rab1 Complex
Length = 117
Score = 44.7 bits (104), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 43/90 (47%), Gaps = 5/90 (5%)
Query: 41 VPTVGLN--IGRIEVSNS--KLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFE 96
+ T+G++ I IE+ KL WD GQ R+I YY AH ++ V D F
Sbjct: 28 ISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFN 87
Query: 97 DSKTALEKVLRNEDLQGAPLLILANKQDLP 126
+ K L+++ R + L++ NK DL
Sbjct: 88 NVKQWLQEIDRYAS-ENVNKLLVGNKCDLT 116
>pdb|1YZN|A Chain A, Gppnhp-Bound Ypt1p Gtpase
Length = 185
Score = 43.5 bits (101), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 32/109 (29%), Positives = 48/109 (44%), Gaps = 7/109 (6%)
Query: 41 VPTVGLN--IGRIEVSNS--KLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFE 96
+ T+G++ I +E+ KL WD GQ R+I YY +H ++ V D F
Sbjct: 51 ISTIGVDFKIKTVELDGKTVKLQIWDTAGQERFRTITSSYYRGSHGIIIVYDVTDQESFN 110
Query: 97 DSKTALEKVLRNEDLQGAPLLILANKQDLPD--AVSADELARYLDLKKL 143
K L+++ R LL+ NK DL D V D + D K+
Sbjct: 111 GVKMWLQEIDRYATSTVLKLLV-GNKCDLKDKRVVEYDVAKEFADANKM 158
>pdb|2P5S|A Chain A, Rab Domain Of Human Rasef In Complex With Gdp
pdb|2P5S|B Chain B, Rab Domain Of Human Rasef In Complex With Gdp
Length = 199
Score = 43.5 bits (101), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 33/126 (26%), Positives = 57/126 (45%), Gaps = 10/126 (7%)
Query: 58 LVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLL 117
L WD GQ RSI + Y+ +A V+ + D C F + + ++ ++ + + P++
Sbjct: 79 LQLWDTAGQERFRSIAKSYFRKADGVLLLYDVTCEKSFLNIREWVD-MIEDAAHETVPIM 137
Query: 118 ILANKQDLPDAVSADELARYLDLKKLDERVCM-----FEAVSGYDGFGIKESVEWLVEVM 172
++ NK D+ D + + + E++ M F S DG I E+V L
Sbjct: 138 LVGNKADIRDTAATE--GQKCVPGHFGEKLAMTYGALFCETSAKDGSNIVEAVLHLAR-- 193
Query: 173 ERSKRT 178
E KRT
Sbjct: 194 EVKKRT 199
>pdb|1YZQ|A Chain A, Gppnhp-Bound Rab6 Gtpase
Length = 170
Score = 43.5 bits (101), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 32/109 (29%), Positives = 49/109 (44%), Gaps = 8/109 (7%)
Query: 57 KLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPL 116
+L WD GQ RS+ Y ++ A V V D + F+ + ++ V R E +
Sbjct: 56 RLQLWDTAGQERFRSLIPSYIRDSAAAVVVYDITNVNSFQQTTKWIDDV-RTERGSDVII 114
Query: 117 LILANKQDLPD--AVSADELARYLDLKKLDERVCMFEAVSGYDGFGIKE 163
+++ NK DL D VS +E R K E MF S G+ +K+
Sbjct: 115 MLVGNKTDLADKRQVSIEEGER-----KAKELNVMFIETSAKAGYNVKQ 158
>pdb|1UKV|Y Chain Y, Structure Of Rabgdp-Dissociation Inhibitor In Complex With
Prenylated Ypt1 Gtpase
pdb|3CUE|F Chain F, Crystal Structure Of A Trapp Subassembly Activating The
Rab Ypt1p
pdb|3CUE|L Chain L, Crystal Structure Of A Trapp Subassembly Activating The
Rab Ypt1p
pdb|3CUE|R Chain R, Crystal Structure Of A Trapp Subassembly Activating The
Rab Ypt1p
pdb|3CUE|X Chain X, Crystal Structure Of A Trapp Subassembly Activating The
Rab Ypt1p
Length = 206
Score = 43.5 bits (101), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 32/109 (29%), Positives = 48/109 (44%), Gaps = 7/109 (6%)
Query: 41 VPTVGLN--IGRIEVSNS--KLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFE 96
+ T+G++ I +E+ KL WD GQ R+I YY +H ++ V D F
Sbjct: 38 ISTIGVDFKIKTVELDGKTVKLQIWDTAGQERFRTITSSYYRGSHGIIIVYDVTDQESFN 97
Query: 97 DSKTALEKVLRNEDLQGAPLLILANKQDLPD--AVSADELARYLDLKKL 143
K L+++ R LL+ NK DL D V D + D K+
Sbjct: 98 GVKMWLQEIDRYATSTVLKLLV-GNKCDLKDKRVVEYDVAKEFADANKM 145
>pdb|2BCG|Y Chain Y, Structure Of Doubly Prenylated Ypt1:gdi Complex
Length = 206
Score = 43.1 bits (100), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 32/109 (29%), Positives = 48/109 (44%), Gaps = 7/109 (6%)
Query: 41 VPTVGLN--IGRIEVSNS--KLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFE 96
+ T+G++ I +E+ KL WD GQ R+I YY +H ++ V D F
Sbjct: 38 ISTIGVDFKIKTVELDGKTVKLQIWDTAGQERFRTITSSYYRGSHGIIIVYDVTDQESFN 97
Query: 97 DSKTALEKVLRNEDLQGAPLLILANKQDLPD--AVSADELARYLDLKKL 143
K L+++ R LL+ NK DL D V D + D K+
Sbjct: 98 GVKMWLQEIDRYATSTVLKLLV-GNKCDLKDKRVVEYDVAKEFADANKM 145
>pdb|2EW1|A Chain A, Crystal Structure Of Rab30 In Complex With A Gtp Analogue
Length = 201
Score = 43.1 bits (100), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 34/68 (50%), Gaps = 4/68 (5%)
Query: 32 VEGLPPDRIVPTVGLN--IGRIEVSNSK--LVFWDLGGQPGLRSIWEKYYEEAHAVVFVI 87
+GL P T+G++ I +E++ K L WD GQ RSI + YY A+A++
Sbjct: 47 TQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQERFRSITQSYYRSANALILTY 106
Query: 88 DAACPSRF 95
D C F
Sbjct: 107 DITCEESF 114
>pdb|2G6B|A Chain A, Crystal Structure Of Human Rab26 In Complex With A Gtp
Analogue
Length = 180
Score = 42.7 bits (99), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 24/89 (26%), Positives = 42/89 (47%), Gaps = 5/89 (5%)
Query: 40 IVPTVGLNIGR----IEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRF 95
+ TVG++ ++ KL WD GQ RS+ YY +AHA++ + D + F
Sbjct: 40 FISTVGIDFRNKVLDVDGVKVKLQMWDTAGQERFRSVTHAYYRDAHALLLLYDVTNKASF 99
Query: 96 EDSKTALEKVLRNEDLQGAPLLILANKQD 124
++ + L ++ L++L NK D
Sbjct: 100 DNIQAWLTEIHEYAQ-HDVALMLLGNKVD 127
>pdb|2Y8E|A Chain A, Crystal Structure Of D. Melanogaster Rab6 Gtpase Bound To
Gmppnp
pdb|2Y8E|B Chain B, Crystal Structure Of D. Melanogaster Rab6 Gtpase Bound To
Gmppnp
Length = 179
Score = 42.7 bits (99), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 31/109 (28%), Positives = 47/109 (43%), Gaps = 8/109 (7%)
Query: 57 KLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPL 116
+L WD GQ RS+ Y ++ V V D + F + ++ V R E +
Sbjct: 64 RLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNTNSFHQTSKWIDDV-RTERGSDVII 122
Query: 117 LILANKQDLPD--AVSADELARYLDLKKLDERVCMFEAVSGYDGFGIKE 163
+++ NK DL D VS +E R K E MF S G+ +K+
Sbjct: 123 MLVGNKTDLSDKRQVSTEEGER-----KAKELNVMFIETSAKAGYNVKQ 166
>pdb|2EFC|B Chain B, Ara7-GdpATVPS9A
pdb|2EFC|D Chain D, Ara7-GdpATVPS9A
pdb|2EFD|B Chain B, Ara7ATVPS9A
pdb|2EFD|D Chain D, Ara7ATVPS9A
pdb|2EFE|B Chain B, Ara7-Gdpnh2ATVPS9A
pdb|2EFE|D Chain D, Ara7-Gdpnh2ATVPS9A
pdb|2EFH|B Chain B, Ara7-GdpATVPS9A(D185N)
pdb|2EFH|D Chain D, Ara7-GdpATVPS9A(D185N)
pdb|4G01|B Chain B, Ara7-gdp-ca2+/vps9a
Length = 181
Score = 42.4 bits (98), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 36/128 (28%), Positives = 54/128 (42%), Gaps = 14/128 (10%)
Query: 57 KLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPL 116
K WD GQ S+ YY A A + V D + FE +K ++++ QG P
Sbjct: 62 KFEIWDTAGQERYHSLAPMYYRGAAAAIIVFDVTNQASFERAKKWVQEL----QAQGNPN 117
Query: 117 LILA---NKQDLPDA--VSADELARYLDLKKLDERVCMFEAVSGYDGFGIKESVEWLVEV 171
+++A NK DL DA V+A++ Y E F S +KE +
Sbjct: 118 MVMALAGNKSDLLDARKVTAEDAQTY-----AQENGLFFMETSAKTATNVKEIFYEIARR 172
Query: 172 MERSKRTE 179
+ R + TE
Sbjct: 173 LPRVQPTE 180
>pdb|2GIL|A Chain A, Structure Of The Extremely Slow Gtpase Rab6a In The Gtp
Bound Form At 1.8 Resolution
pdb|2GIL|B Chain B, Structure Of The Extremely Slow Gtpase Rab6a In The Gtp
Bound Form At 1.8 Resolution
pdb|2GIL|C Chain C, Structure Of The Extremely Slow Gtpase Rab6a In The Gtp
Bound Form At 1.8 Resolution
pdb|2GIL|D Chain D, Structure Of The Extremely Slow Gtpase Rab6a In The Gtp
Bound Form At 1.8 Resolution
Length = 162
Score = 42.4 bits (98), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/109 (28%), Positives = 48/109 (44%), Gaps = 8/109 (7%)
Query: 57 KLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPL 116
+L WD GQ RS+ Y ++ V V D + F+ + ++ V R E +
Sbjct: 51 RLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNVNSFQQTTKWIDDV-RTERGSDVII 109
Query: 117 LILANKQDLPD--AVSADELARYLDLKKLDERVCMFEAVSGYDGFGIKE 163
+++ NK DL D VS +E R K E MF S G+ +K+
Sbjct: 110 MLVGNKTDLADKRQVSIEEGER-----KAKELNVMFIETSAKAGYNVKQ 153
>pdb|2F7S|A Chain A, The Crystal Structure Of Human Rab27b Bound To Gdp
pdb|2F7S|B Chain B, The Crystal Structure Of Human Rab27b Bound To Gdp
Length = 217
Score = 42.0 bits (97), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/119 (24%), Positives = 56/119 (47%), Gaps = 6/119 (5%)
Query: 58 LVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLL 117
L WD GQ RS+ ++ +A + + D F + + + ++ N + ++
Sbjct: 86 LQLWDTAGQERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPDIV 145
Query: 118 ILANKQDLPDAVSADE-LARYLDLKKLDERVCMFEAVSGYDGFGIKESVEWLVE-VMER 174
++ NK DLPD +E AR L D+ + S G ++++VE L++ +M+R
Sbjct: 146 LIGNKADLPDQREVNERQAREL----ADKYGIPYFETSAATGQNVEKAVETLLDLIMKR 200
>pdb|3RAB|A Chain A, Gppnhp-bound Rab3a At 2.0 A Resolution
Length = 169
Score = 42.0 bits (97), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 41/146 (28%), Positives = 64/146 (43%), Gaps = 19/146 (13%)
Query: 32 VEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAAC 91
V + D V T+ N RI KL WD GQ R+I YY A + + D
Sbjct: 35 VSTVGIDFKVKTIYRNDKRI-----KLQIWDTAGQERYRTITTAYYRGAMGFILMYDITN 89
Query: 92 PSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPD--AVSAD---ELARYLDLKKLDER 146
F ++ ++ A +L++ NK D+ D VS++ +LA +L +
Sbjct: 90 EESF-NAVQDWSTQIKTYSWDNAQVLLVGNKCDMEDERVVSSERGRQLADHLGFE----- 143
Query: 147 VCMFEAVSGYDGFGIKESVEWLVEVM 172
FEA S D +K++ E LV+V+
Sbjct: 144 --FFEA-SAKDNINVKQTFERLVDVI 166
>pdb|3CPH|A Chain A, Crystal Structure Of Sec4 In Complex With Rab-Gdi
Length = 213
Score = 42.0 bits (97), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/98 (28%), Positives = 49/98 (50%), Gaps = 6/98 (6%)
Query: 41 VPTVGLN--IGRIEVSNSK--LVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFE 96
+ T+G++ I ++++ K L WD GQ R+I YY A ++ V D F
Sbjct: 50 ITTIGIDFKIKTVDINGKKVKLQLWDTAGQERFRTITTAYYRGAMGIILVYDVTDERTFT 109
Query: 97 DSKTALEKVLRNEDLQGAPLLILANKQDLPD-AVSADE 133
+ K + V + + + A LL++ NK D+ V+AD+
Sbjct: 110 NIKQWFKTVNEHANDE-AQLLLVGNKSDMETRVVTADQ 146
>pdb|2EQB|A Chain A, Crystal Structure Of The Rab Gtpase Sec4p, The Sec2p Gef
Domain, And Phosphate Complex
Length = 174
Score = 41.6 bits (96), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 28/98 (28%), Positives = 49/98 (50%), Gaps = 6/98 (6%)
Query: 41 VPTVGLN--IGRIEVSNSK--LVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFE 96
+ T+G++ I ++++ K L WD GQ R+I YY A ++ V D F
Sbjct: 37 ITTIGIDFKIKTVDINGKKVKLQLWDTAGQERFRTITTAYYRGAMGIILVYDVTDERTFT 96
Query: 97 DSKTALEKVLRNEDLQGAPLLILANKQDLPD-AVSADE 133
+ K + V + + + A LL++ NK D+ V+AD+
Sbjct: 97 NIKQWFKTVNEHANDE-AQLLLVGNKSDMETRVVTADQ 133
>pdb|2WWX|A Chain A, Crystal Structure Of The SidmDRRA(GEFGDF DOMAIN)-Rab1
(Gtpase Domain) Complex
Length = 175
Score = 41.6 bits (96), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 32/109 (29%), Positives = 49/109 (44%), Gaps = 10/109 (9%)
Query: 41 VPTVGLN--IGRIEVSNS--KLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFE 96
+ T+G++ I IE+ KL WD GQ R+I YY AH ++ V D F
Sbjct: 38 ISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFN 97
Query: 97 DSKTALEKVLRNEDLQGAPLLILANKQDLP-----DAVSADELARYLDL 140
+ K L+++ R + L++ K DL D +A E A L +
Sbjct: 98 NVKQWLQEIDRYAS-ENVNKLLVGIKCDLTTKKVVDYTTAKEFADSLGI 145
>pdb|1G17|A Chain A, Crystal Structure Of Sec4-Guanosine-5'-(Beta,Gamma)-
Imidotriphosphate
pdb|1G17|B Chain B, Crystal Structure Of Sec4-Guanosine-5'-(Beta,Gamma)-
Imidotriphosphate
Length = 170
Score = 41.2 bits (95), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 28/98 (28%), Positives = 49/98 (50%), Gaps = 6/98 (6%)
Query: 41 VPTVGLN--IGRIEVSNSK--LVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFE 96
+ T+G++ I ++++ K L WD GQ R+I YY A ++ V D F
Sbjct: 33 ITTIGIDFKIKTVDINGKKVKLQIWDTAGQERFRTITTAYYRGAMGIILVYDITDERTFT 92
Query: 97 DSKTALEKVLRNEDLQGAPLLILANKQDLPD-AVSADE 133
+ K + V + + + A LL++ NK D+ V+AD+
Sbjct: 93 NIKQWFKTVNEHANDE-AQLLLVGNKSDMETRVVTADQ 129
>pdb|1Z0A|A Chain A, Gdp-Bound Rab2a Gtpase
pdb|1Z0A|B Chain B, Gdp-Bound Rab2a Gtpase
pdb|1Z0A|C Chain C, Gdp-Bound Rab2a Gtpase
pdb|1Z0A|D Chain D, Gdp-Bound Rab2a Gtpase
Length = 174
Score = 40.8 bits (94), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 35/87 (40%), Gaps = 5/87 (5%)
Query: 43 TVGLNIG----RIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDS 98
T+G+ G I+ KL WD GQ RSI YY A + V D F
Sbjct: 42 TIGVEFGARMITIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRDTFNHL 101
Query: 99 KTALEKVLRNEDLQGAPLLILANKQDL 125
T LE R ++++ NK DL
Sbjct: 102 TTWLEDA-RQHSNSNMVIMLIGNKSDL 127
>pdb|3BFK|A Chain A, Crystal Structure Of Plasmodium Falciparum Rab11a In
Complex With Gdp
pdb|3BFK|B Chain B, Crystal Structure Of Plasmodium Falciparum Rab11a In
Complex With Gdp
pdb|3BFK|C Chain C, Crystal Structure Of Plasmodium Falciparum Rab11a In
Complex With Gdp
pdb|3BFK|D Chain D, Crystal Structure Of Plasmodium Falciparum Rab11a In
Complex With Gdp
pdb|3BFK|E Chain E, Crystal Structure Of Plasmodium Falciparum Rab11a In
Complex With Gdp
Length = 181
Score = 40.8 bits (94), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 29/109 (26%), Positives = 53/109 (48%), Gaps = 8/109 (7%)
Query: 42 PTVGLNIG--RIEVSNSKLV---FWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFE 96
T+G+ I++ N+K++ WD GQ R+I YY A + V D + FE
Sbjct: 38 STIGVEFATKSIQLKNNKIIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKKNSFE 97
Query: 97 DSKTALEKVLRNEDLQGAPLLILANKQDLPD--AVSADELARYLDLKKL 143
+ + L+++ N D +L++ NK DL ++ ++ +Y +KL
Sbjct: 98 NIEKWLKELRDNAD-SNIVILLVGNKSDLKHLRVINDNDATQYAKKEKL 145
>pdb|1D5C|A Chain A, Crystal Structure Of Plasmodium Falciparum Rab6 Complexed
With Gdp
Length = 162
Score = 40.4 bits (93), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 30/108 (27%), Positives = 47/108 (43%), Gaps = 8/108 (7%)
Query: 57 KLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPL 116
+L WD GQ RS+ Y ++ A + V D FE++ ++ +L NE + +
Sbjct: 51 RLQLWDTAGQERFRSLIPSYIRDSAAAIVVYDITNRQSFENTTKWIQDIL-NERGKDVII 109
Query: 117 LILANKQDLPD--AVSADELARYLDLKKLDERVCMFEAVSGYDGFGIK 162
++ NK DL D V+ +E +K E F S G IK
Sbjct: 110 ALVGNKTDLGDLRKVTYEE-----GXQKAQEYNTXFHETSAKAGHNIK 152
>pdb|2IF0|A Chain A, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
pdb|2IF0|B Chain B, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
Length = 200
Score = 40.4 bits (93), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 29/123 (23%), Positives = 59/123 (47%), Gaps = 8/123 (6%)
Query: 58 LVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLL 117
L WD G RS+ ++ +A + + D F + + + ++ N + ++
Sbjct: 72 LQLWDTAGLERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPDIV 131
Query: 118 ILANKQDLPDAVSADELARYLDLKKLDER--VCMFEAVSGYDGFGIKESVEWLVE-VMER 174
++ NK DLPD +E ++L E+ + FE S G +++SVE L++ +M+R
Sbjct: 132 LIGNKADLPDQREVNERQ----ARELAEKYGIPYFE-TSAATGQNVEKSVETLLDLIMKR 186
Query: 175 SKR 177
++
Sbjct: 187 MEK 189
>pdb|2FH5|B Chain B, The Structure Of The Mammalian Srp Receptor
pdb|2GO5|2 Chain 2, Structure Of Signal Recognition Particle Receptor (Sr) In
Complex With Signal Recognition Particle (Srp) And
Ribosome Nascent Chain Complex
Length = 214
Score = 40.4 bits (93), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 39/113 (34%), Positives = 59/113 (52%), Gaps = 7/113 (6%)
Query: 52 EVSNSK---LVFWDLGGQPGLR-SIWEKYYEEAHAVVFVIDAACPSR-FEDSKTALEKVL 106
+V+N++ L DL G LR + +++ A AVVFV+D+A R +D L +VL
Sbjct: 47 KVNNNRGNSLTLIDLPGHESLRFQLLDRFKSSARAVVFVVDSAAFQREVKDVAEFLYQVL 106
Query: 107 RNE-DLQGAP-LLILANKQDLPDAVSADELARYLDLKKLDERVCMFEAVSGYD 157
+ L+ +P LLI NKQD+ A SA + + L+ + RV A S D
Sbjct: 107 IDSMALKNSPSLLIACNKQDIAMAKSAKLIQQQLEKELNTLRVTRSAAPSTLD 159
>pdb|2OCY|C Chain C, Complex Of The Guanine Exchange Factor Sec2p And The Rab
Gtpase Sec4p
Length = 170
Score = 40.0 bits (92), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 28/98 (28%), Positives = 48/98 (48%), Gaps = 6/98 (6%)
Query: 41 VPTVGLN--IGRIEVSNSK--LVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFE 96
+ T+G++ I ++++ K L WD GQ R+I YY A ++ V D F
Sbjct: 33 ITTIGIDFKIKTVDINGKKVKLQLWDTAGQERFRTITTAYYRGAXGIILVYDVTDERTFT 92
Query: 97 DSKTALEKVLRNEDLQGAPLLILANKQDLPD-AVSADE 133
+ K + V + + + A LL++ NK D V+AD+
Sbjct: 93 NIKQWFKTVNEHANDE-AQLLLVGNKSDXETRVVTADQ 129
>pdb|2FE4|A Chain A, The Crystal Structure Of Human Neuronal Rab6b In Its
Inactive Gdp-Bound Form
pdb|2FFQ|A Chain A, The Crystal Structure Of Human Neuronal Rab6b In Its
Active Gtpgs-Bound Form
pdb|2E9S|A Chain A, Human Neuronal Rab6b In Three Intermediate Forms
pdb|2E9S|B Chain B, Human Neuronal Rab6b In Three Intermediate Forms
pdb|2E9S|C Chain C, Human Neuronal Rab6b In Three Intermediate Forms
Length = 171
Score = 40.0 bits (92), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 27/111 (24%), Positives = 49/111 (44%), Gaps = 12/111 (10%)
Query: 57 KLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPL 116
+L WD GQ RS+ Y ++ V V D + F+ + ++ V R E +
Sbjct: 52 RLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNLNSFQQTSKWIDDV-RTERGSDVII 110
Query: 117 LILANKQDLPDAVSADELARYLDLKKLDERV----CMFEAVSGYDGFGIKE 163
+++ NK DL D R + +++ ++R MF S G+ +K+
Sbjct: 111 MLVGNKTDLAD-------KRQITIEEGEQRAKELSVMFIETSAKTGYNVKQ 154
>pdb|2A5J|A Chain A, Crystal Structure Of Human Rab2b
Length = 191
Score = 40.0 bits (92), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 35/87 (40%), Gaps = 5/87 (5%)
Query: 43 TVGLNIG----RIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDS 98
T+G+ G I+ KL WD GQ RSI YY A + V D F
Sbjct: 53 TIGVEFGARMVNIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHL 112
Query: 99 KTALEKVLRNEDLQGAPLLILANKQDL 125
+ LE R ++++ NK DL
Sbjct: 113 TSWLEDA-RQHSSSNMVIMLIGNKSDL 138
>pdb|2IEZ|A Chain A, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
pdb|2IEZ|B Chain B, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
pdb|2IEZ|H Chain H, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
pdb|2IEZ|I Chain I, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
Length = 220
Score = 39.7 bits (91), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/123 (23%), Positives = 59/123 (47%), Gaps = 8/123 (6%)
Query: 58 LVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLL 117
L WD G RS+ ++ +A + + D F + + + ++ N + ++
Sbjct: 72 LQLWDTAGLERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPDIV 131
Query: 118 ILANKQDLPDAVSADELARYLDLKKLDER--VCMFEAVSGYDGFGIKESVEWLVE-VMER 174
++ NK DLPD +E ++L E+ + FE S G +++SVE L++ +M+R
Sbjct: 132 LIGNKADLPDQREVNERQ----ARELAEKYGIPYFE-TSAATGQNVEKSVETLLDLIMKR 186
Query: 175 SKR 177
++
Sbjct: 187 MEK 189
>pdb|1G16|A Chain A, Crystal Structure Of Sec4-Gdp
pdb|1G16|B Chain B, Crystal Structure Of Sec4-Gdp
pdb|1G16|C Chain C, Crystal Structure Of Sec4-Gdp
pdb|1G16|D Chain D, Crystal Structure Of Sec4-Gdp
Length = 170
Score = 39.7 bits (91), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/98 (28%), Positives = 48/98 (48%), Gaps = 6/98 (6%)
Query: 41 VPTVGLN--IGRIEVSNSK--LVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFE 96
+ T+G++ I ++++ K L WD GQ R+I YY A ++ V D F
Sbjct: 33 ITTIGIDFKIKTVDINGKKVKLQIWDTAGQERFRTITTAYYRGAXGIILVYDITDERTFT 92
Query: 97 DSKTALEKVLRNEDLQGAPLLILANKQDLPD-AVSADE 133
+ K + V + + + A LL++ NK D V+AD+
Sbjct: 93 NIKQWFKTVNEHANDE-AQLLLVGNKSDXETRVVTADQ 129
>pdb|4DKX|A Chain A, Crystal Structure Of The Rab 6a'(Q72l)
pdb|4DKX|B Chain B, Crystal Structure Of The Rab 6a'(Q72l)
Length = 216
Score = 39.3 bits (90), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/109 (28%), Positives = 48/109 (44%), Gaps = 8/109 (7%)
Query: 57 KLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPL 116
+L WD G RS+ Y ++ A V V D + F+ + ++ V R E +
Sbjct: 63 RLQLWDTAGLERFRSLIPSYIRDSAAAVVVYDITNVNSFQQTTKWIDDV-RTERGSDVII 121
Query: 117 LILANKQDLPD--AVSADELARYLDLKKLDERVCMFEAVSGYDGFGIKE 163
+++ NK DL D VS +E R K E MF S G+ +K+
Sbjct: 122 MLVGNKTDLADKRQVSIEEGER-----KAKELNVMFIETSAKAGYNVKQ 165
>pdb|3QBT|A Chain A, Crystal Structure Of Ocrl1 540-678 In Complex With
Rab8a:gppnhp
pdb|3QBT|C Chain C, Crystal Structure Of Ocrl1 540-678 In Complex With
Rab8a:gppnhp
pdb|3QBT|E Chain E, Crystal Structure Of Ocrl1 540-678 In Complex With
Rab8a:gppnhp
pdb|3QBT|G Chain G, Crystal Structure Of Ocrl1 540-678 In Complex With
Rab8a:gppnhp
pdb|3TNF|A Chain A, Lida From Legionella In Complex With Active Rab8a
Length = 174
Score = 39.3 bits (90), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/93 (29%), Positives = 44/93 (47%), Gaps = 9/93 (9%)
Query: 41 VPTVGLN--IGRIEVSNS--KLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFE 96
+ T+G++ I IE+ KL WD GQ R+I YY A ++ V D F+
Sbjct: 36 ISTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFD 95
Query: 97 DSKTALEKVLRNEDLQGAPL--LILANKQDLPD 127
+ + + + E+ A + +IL NK D+ D
Sbjct: 96 NIRNWIRNI---EEHASADVEKMILGNKCDVND 125
>pdb|1GUA|A Chain A, Human Rap1a, Residues 1-167, Double Mutant (E30d,K31e)
Complexed With Gppnhp And The Ras-Binding-Domain Of
Human C-Raf1, Residues 51-131
pdb|3KUC|A Chain A, Complex Of Rap1a(E30dK31E)GDP WITH RAFRBD(A85KN71R)
Length = 167
Score = 39.3 bits (90), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/99 (23%), Positives = 43/99 (43%), Gaps = 3/99 (3%)
Query: 32 VEGLPPDRIVPTVGLNIGR---IEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVID 88
V+G+ D PT+ + + ++ L D G ++ + Y + V
Sbjct: 24 VQGIFVDEYDPTIEDSYRKQVEVDCQQCMLEILDTAGTEQFTAMRDLYMKNGQGFALVYS 83
Query: 89 AACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPD 127
S F D + E++LR +D + P++++ NK DL D
Sbjct: 84 ITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLED 122
>pdb|2FU5|C Chain C, Structure Of Rab8 In Complex With Mss4
pdb|2FU5|D Chain D, Structure Of Rab8 In Complex With Mss4
Length = 183
Score = 39.3 bits (90), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/93 (29%), Positives = 44/93 (47%), Gaps = 9/93 (9%)
Query: 41 VPTVGLN--IGRIEVSNS--KLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFE 96
+ T+G++ I IE+ KL WD GQ R+I YY A ++ V D F+
Sbjct: 38 ISTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFD 97
Query: 97 DSKTALEKVLRNEDLQGAPL--LILANKQDLPD 127
+ + + + E+ A + +IL NK D+ D
Sbjct: 98 NIRNWIRNI---EEHASADVEKMILGNKCDVND 127
>pdb|1KY2|A Chain A, Gppnhp-Bound Ypt7p At 1.6 A Resolution
pdb|1KY3|A Chain A, Gdp-Bound Ypt7p At 1.35 A Resolution
Length = 182
Score = 38.9 bits (89), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 41/87 (47%), Gaps = 9/87 (10%)
Query: 61 WDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGA---PLL 117
WD GQ +S+ +Y A V V D S FE+ K+ ++ L + ++ P +
Sbjct: 63 WDTAGQERFQSLGVAFYRGADCCVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFPFV 122
Query: 118 ILANKQDLPDA------VSADELARYL 138
IL NK D ++ SA ELA+ L
Sbjct: 123 ILGNKIDAEESKKIVSEKSAQELAKSL 149
>pdb|3CWZ|A Chain A, Strucure Of Rab6(Gtp)-R6ip1 Complex
Length = 188
Score = 38.9 bits (89), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/109 (27%), Positives = 47/109 (43%), Gaps = 8/109 (7%)
Query: 57 KLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPL 116
+L WD G RS+ Y ++ V V D + F+ + ++ V R E +
Sbjct: 56 RLQLWDTAGLERFRSLIPSYIRDSTVAVVVYDITNVNSFQQTTKWIDDV-RTERGSDVII 114
Query: 117 LILANKQDLPD--AVSADELARYLDLKKLDERVCMFEAVSGYDGFGIKE 163
+++ NK DL D VS +E R K E MF S G+ +K+
Sbjct: 115 MLVGNKTDLADKRQVSIEEGER-----KAKELNVMFIETSAKAGYNVKQ 158
>pdb|1C1Y|A Chain A, Crystal Structure Of Rap.Gmppnp In Complex With The Ras-
Binding-Domain Of C-Raf1 Kinase (Rafrbd)
Length = 167
Score = 38.5 bits (88), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 22/99 (22%), Positives = 44/99 (44%), Gaps = 3/99 (3%)
Query: 32 VEGLPPDRIVPTVGLNIGR---IEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVID 88
V+G+ ++ PT+ + + ++ L D G ++ + Y + V
Sbjct: 24 VQGIFVEKYDPTIEDSYRKQVEVDCQQCMLEILDTAGTEQFTAMRDLYMKNGQGFALVYS 83
Query: 89 AACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPD 127
S F D + E++LR +D + P++++ NK DL D
Sbjct: 84 ITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLED 122
>pdb|4EPR|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And
Inhibit Sos- Mediated Activation
Length = 170
Score = 38.1 bits (87), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 37/83 (44%), Gaps = 4/83 (4%)
Query: 58 LVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLL 117
L D GQ ++ ++Y + V FED E++ R +D + P++
Sbjct: 54 LDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMV 113
Query: 118 ILANKQDLP----DAVSADELAR 136
++ NK DLP D A +LAR
Sbjct: 114 LVGNKSDLPSRTVDTKQAQDLAR 136
>pdb|1Z22|A Chain A, Gdp-Bound Rab23 Gtpase Crystallized In C222(1) Space Group
pdb|1Z2A|A Chain A, Gdp-Bound Rab23 Gtpase Crystallized In P2(1)2(1)2(1) Space
Group
Length = 168
Score = 38.1 bits (87), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 32/109 (29%), Positives = 52/109 (47%), Gaps = 11/109 (10%)
Query: 42 PTVGLNI--GRIEVSNS--KLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFED 97
T+G++ +I+V++ +L+ WD GQ +I + YY A A V V FE
Sbjct: 36 KTIGVDFLERQIQVNDEDVRLMLWDTAGQEEFDAITKAYYRGAQACVLVFSTTDRESFEA 95
Query: 98 SKTALEKVLRNEDLQGAPLLILANKQDLPDAVS-----ADELARYLDLK 141
+ EKV+ ++ P ++ NK DL D A+ LA+ L L+
Sbjct: 96 ISSWREKVV--AEVGDIPTALVQNKIDLLDDSCIKNEEAEGLAKRLKLR 142
>pdb|2IEY|A Chain A, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Hexagonal Space Group
pdb|2IEY|B Chain B, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Hexagonal Space Group
Length = 195
Score = 38.1 bits (87), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/119 (22%), Positives = 54/119 (45%), Gaps = 7/119 (5%)
Query: 58 LVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLL 117
L WD G RS+ ++ +A + D F + + ++ N + ++
Sbjct: 72 LQLWDTAGLERFRSLTTAFFRDAXGFLLXFDLTSQQSFLNVRNWXSQLQANAYCENPDIV 131
Query: 118 ILANKQDLPDAVSADELARYLDLKKLDER--VCMFEAVSGYDGFGIKESVEWLVEVMER 174
++ NK DLPD +E ++L E+ + FE S G +++SVE L++++ +
Sbjct: 132 LIGNKADLPDQREVNERQ----ARELAEKYGIPYFE-TSAATGQNVEKSVETLLDLIXK 185
>pdb|4EPX|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And
Inhibit Sos- Mediated Activation
pdb|4EPY|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And
Inhibit Sos- Mediated Activation
Length = 170
Score = 38.1 bits (87), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 37/83 (44%), Gaps = 4/83 (4%)
Query: 58 LVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLL 117
L D GQ ++ ++Y + V FED E++ R +D + P++
Sbjct: 54 LDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMV 113
Query: 118 ILANKQDLP----DAVSADELAR 136
++ NK DLP D A +LAR
Sbjct: 114 LVGNKSDLPSRTVDTKQAQDLAR 136
>pdb|4EPT|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And
Inhibit Sos- Mediated Activation
pdb|4EPV|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And
Inhibit Sos- Mediated Activation
pdb|4EPW|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And
Inhibit Sos- Mediated Activation
Length = 170
Score = 38.1 bits (87), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 37/83 (44%), Gaps = 4/83 (4%)
Query: 58 LVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLL 117
L D GQ ++ ++Y + V FED E++ R +D + P++
Sbjct: 54 LDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMV 113
Query: 118 ILANKQDLP----DAVSADELAR 136
++ NK DLP D A +LAR
Sbjct: 114 LVGNKSDLPSRTVDTKQAQDLAR 136
>pdb|2ZET|A Chain A, Crystal Structure Of The Small Gtpase Rab27b Complexed
With The Slp Homology Domain Of Slac2-AMELANOPHILIN
pdb|2ZET|B Chain B, Crystal Structure Of The Small Gtpase Rab27b Complexed
With The Slp Homology Domain Of Slac2-AMELANOPHILIN
Length = 203
Score = 38.1 bits (87), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/119 (22%), Positives = 54/119 (45%), Gaps = 7/119 (5%)
Query: 58 LVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLL 117
L WD G RS+ ++ +A + D F + + ++ N + ++
Sbjct: 72 LQLWDTAGLERFRSLTTAFFRDAXGFLLXFDLTSQQSFLNVRNWXSQLQANAYCENPDIV 131
Query: 118 ILANKQDLPDAVSADELARYLDLKKLDER--VCMFEAVSGYDGFGIKESVEWLVEVMER 174
++ NK DLPD +E ++L E+ + FE S G +++SVE L++++ +
Sbjct: 132 LIGNKADLPDQREVNERQ----ARELAEKYGIPYFE-TSAATGQNVEKSVETLLDLIXK 185
>pdb|3RWM|B Chain B, Crystal Structure Of Ypt32 In Complex With Gppnhp
pdb|3RWO|B Chain B, Crystal Structure Of Ypt32 In Complex With Gdp
pdb|3RWO|A Chain A, Crystal Structure Of Ypt32 In Complex With Gdp
Length = 185
Score = 38.1 bits (87), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 33/102 (32%), Positives = 44/102 (43%), Gaps = 7/102 (6%)
Query: 42 PTVGLNIGR--IEVSNSKL--VFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFED 97
T+G+ IEV N K+ WD G R+I YY A + V D + S +E+
Sbjct: 41 STIGVEFATRTIEVENKKIKAQIWDTAGLERYRAITSAYYRGAVGALIVYDISKSSSYEN 100
Query: 98 SKTALEKVLRNEDLQGAPLLILANKQDLPD--AVSADELARY 137
L ++ N D A LI NK DL AV DE +
Sbjct: 101 CNHWLTELRENADDNVAVGLI-GNKSDLAHLRAVPTDEAKNF 141
>pdb|3BBP|A Chain A, Rab6-Gtp:gcc185 Rab Binding Domain Complex
pdb|3BBP|B Chain B, Rab6-Gtp:gcc185 Rab Binding Domain Complex
pdb|3BBP|C Chain C, Rab6-Gtp:gcc185 Rab Binding Domain Complex
Length = 211
Score = 37.7 bits (86), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 31/115 (26%), Positives = 49/115 (42%), Gaps = 8/115 (6%)
Query: 51 IEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNED 110
+E +L WD G RS+ Y ++ V V D + F+ + ++ V R E
Sbjct: 60 LEDRTVRLQLWDTAGLERFRSLIPSYIRDSTVAVVVYDITNVNSFQQTTKWIDDV-RTER 118
Query: 111 LQGAPLLILANKQDLPD--AVSADELARYLDLKKLDERVCMFEAVSGYDGFGIKE 163
++++ NK DL D VS +E R K E MF S G+ +K+
Sbjct: 119 GSDVIIMLVGNKTDLADKRQVSIEEGER-----KAKELNVMFIETSAKAGYNVKQ 168
>pdb|3CPJ|B Chain B, Crystal Structure Of Ypt31 In Complex With Yeast Rab-Gdi
Length = 223
Score = 37.7 bits (86), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 34/124 (27%), Positives = 51/124 (41%), Gaps = 8/124 (6%)
Query: 51 IEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNED 110
IE K WD GQ R+I YY A + V D + S +E+ L ++ N D
Sbjct: 57 IEGKRIKAQIWDTAGQERYRAITSAYYRGAVGALIVYDISKSSSYENCNHWLSELRENAD 116
Query: 111 LQGAPLLILANKQDLPD--AVSADELARYLDLKKLDERVCMFEAVSGYDGFGIKESVEWL 168
A LI NK DL AV +E + +L +F S + + ++ E L
Sbjct: 117 DNVAVGLI-GNKSDLAHLRAVPTEESKTFAQENQL-----LFTETSALNSENVDKAFEEL 170
Query: 169 VEVM 172
+ +
Sbjct: 171 INTI 174
>pdb|2HUP|A Chain A, Crystal Structure Of Human Rab43 In Complex With Gdp
pdb|2HUP|B Chain B, Crystal Structure Of Human Rab43 In Complex With Gdp
Length = 201
Score = 37.7 bits (86), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 37/140 (26%), Positives = 55/140 (39%), Gaps = 17/140 (12%)
Query: 34 GLPPDRIVPTVGLNIG----RIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDA 89
G +R T+G++ I+ KL WD GQ R+I + YY A+ + D
Sbjct: 52 GAFSERQGSTIGVDFTMKTLEIQGKRVKLQIWDTAGQERFRTITQSYYRSANGAILAYDI 111
Query: 90 ACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPD-----AVSADELARYLDLKKLD 144
S F +E V + LLI NK DL + A LA + D+
Sbjct: 112 TKRSSFLSVPHWIEDVRKYAGSNIVQLLI-GNKSDLSELREVSLAEAQSLAEHYDI---- 166
Query: 145 ERVCMFEAVSGYDGFGIKES 164
+C E S D ++E+
Sbjct: 167 --LCAIE-TSAKDSSNVEEA 183
>pdb|1TU4|A Chain A, Crystal Structure Of Rab5-Gdp Complex
pdb|1TU4|B Chain B, Crystal Structure Of Rab5-Gdp Complex
pdb|1TU4|C Chain C, Crystal Structure Of Rab5-Gdp Complex
pdb|1TU4|D Chain D, Crystal Structure Of Rab5-Gdp Complex
Length = 171
Score = 37.7 bits (86), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 40/92 (43%), Gaps = 9/92 (9%)
Query: 57 KLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPL 116
K WD GQ S+ YY A A + V D F +K ++++ R Q +P
Sbjct: 57 KFEIWDTAGQERYHSLAPXYYRGAQAAIVVYDITNEESFARAKNWVKELQR----QASPN 112
Query: 117 LILA---NKQDLPD--AVSADELARYLDLKKL 143
+++A NK DL + AV E Y D L
Sbjct: 113 IVIALSGNKADLANKRAVDFQEAQSYADDNSL 144
>pdb|1N6N|A Chain A, Crystal Structure Of Human Rab5a A30r Mutant Complex With
Gppnhp
Length = 170
Score = 37.4 bits (85), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 39/88 (44%), Gaps = 9/88 (10%)
Query: 57 KLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPL 116
K WD GQ S+ YY A A + V D F +K ++++ R Q +P
Sbjct: 56 KFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQR----QASPN 111
Query: 117 LILA---NKQDLPD--AVSADELARYLD 139
+++A NK DL + AV E Y D
Sbjct: 112 IVIALSGNKADLANKRAVDFQEAQSYAD 139
>pdb|1N6P|A Chain A, Crystal Structure Of Human Rab5a A30e Mutant Complex With
Gppnhp
Length = 170
Score = 37.4 bits (85), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 39/88 (44%), Gaps = 9/88 (10%)
Query: 57 KLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPL 116
K WD GQ S+ YY A A + V D F +K ++++ R Q +P
Sbjct: 56 KFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQR----QASPN 111
Query: 117 LILA---NKQDLPD--AVSADELARYLD 139
+++A NK DL + AV E Y D
Sbjct: 112 IVIALSGNKADLANKRAVDFQEAQSYAD 139
>pdb|2HEI|A Chain A, Crystal Structure Of Human Rab5b In Complex With Gdp
pdb|2HEI|B Chain B, Crystal Structure Of Human Rab5b In Complex With Gdp
Length = 179
Score = 37.4 bits (85), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 40/88 (45%), Gaps = 9/88 (10%)
Query: 57 KLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPL 116
K WD GQ S+ YY A A + V D F +KT ++++ R Q +P
Sbjct: 58 KFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNQETFARAKTWVKELQR----QASPS 113
Query: 117 LILA---NKQDLPDA--VSADELARYLD 139
+++A NK DL + V +E Y D
Sbjct: 114 IVIALAGNKADLANKRMVEYEEAQAYAD 141
>pdb|2GF9|A Chain A, Crystal Structure Of Human Rab3d In Complex With Gdp
Length = 189
Score = 37.4 bits (85), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 39/139 (28%), Positives = 59/139 (42%), Gaps = 12/139 (8%)
Query: 40 IVPTVGLNIGRIEVSNS----KLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRF 95
V TVG++ V KL WD GQ R+I YY A + + D A F
Sbjct: 51 FVSTVGIDFKVKTVYRHDKRIKLQIWDTAGQERYRTITTAYYRGAMGFLLMYDIANQESF 110
Query: 96 EDSKTALEKVLRNEDLQGAPLLILANKQDLPD--AVSADELARYLDLKKLDERVCMFEAV 153
+ ++ + A ++++ NK DL D V A++ R D D FEA
Sbjct: 111 AAVQDWATQI-KTYSWDNAQVILVGNKCDLEDERVVPAEDGRRLAD----DLGFEFFEA- 164
Query: 154 SGYDGFGIKESVEWLVEVM 172
S + +K+ E LV+V+
Sbjct: 165 SAKENINVKQVFERLVDVI 183
>pdb|1N6O|A Chain A, Crystal Structure Of Human Rab5a A30k Mutant Complex With
Gppnhp
Length = 170
Score = 37.4 bits (85), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 39/88 (44%), Gaps = 9/88 (10%)
Query: 57 KLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPL 116
K WD GQ S+ YY A A + V D F +K ++++ R Q +P
Sbjct: 56 KFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQR----QASPN 111
Query: 117 LILA---NKQDLPD--AVSADELARYLD 139
+++A NK DL + AV E Y D
Sbjct: 112 IVIALSGNKADLANKRAVDFQEAQSYAD 139
>pdb|1N6R|A Chain A, Crystal Structure Of Human Rab5a A30l Mutant Complex With
Gppnhp
Length = 170
Score = 37.4 bits (85), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 39/88 (44%), Gaps = 9/88 (10%)
Query: 57 KLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPL 116
K WD GQ S+ YY A A + V D F +K ++++ R Q +P
Sbjct: 56 KFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQR----QASPN 111
Query: 117 LILA---NKQDLPD--AVSADELARYLD 139
+++A NK DL + AV E Y D
Sbjct: 112 IVIALSGNKADLANKRAVDFQEAQSYAD 139
>pdb|1Z08|A Chain A, Gppnhp-Bound Rab21 Q53g Mutant Gtpase
pdb|1Z08|B Chain B, Gppnhp-Bound Rab21 Q53g Mutant Gtpase
pdb|1Z08|C Chain C, Gppnhp-Bound Rab21 Q53g Mutant Gtpase
pdb|1Z08|D Chain D, Gppnhp-Bound Rab21 Q53g Mutant Gtpase
Length = 170
Score = 37.4 bits (85), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 30/98 (30%), Positives = 43/98 (43%), Gaps = 17/98 (17%)
Query: 38 DRIVPTVG-------LNIGRIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAA 90
D+ + T+G LNIG V+ L WD GQ ++ YY +++ + V D
Sbjct: 33 DKHITTLGASFLTKKLNIGGKRVN---LAIWDTAGQERFHALGPIYYRDSNGAILVYDIT 89
Query: 91 CPSRFEDSKT---ALEKVLRNEDLQGAPLLILANKQDL 125
F+ K L K+L NE L I+ NK DL
Sbjct: 90 DEDSFQKVKNWVKELRKMLGNE----ICLCIVGNKIDL 123
>pdb|1N6I|A Chain A, Crystal Structure Of Human Rab5a A30p Mutant Complex With
Gdp
pdb|1N6K|A Chain A, Crystal Structure Of Human Rab5a A30p Mutant Complex With
Gdp And Aluminum Fluoride
pdb|1N6L|A Chain A, Crystal Structure Of Human Rab5a A30p Mutant Complex With
Gtp
Length = 170
Score = 37.4 bits (85), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 39/88 (44%), Gaps = 9/88 (10%)
Query: 57 KLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPL 116
K WD GQ S+ YY A A + V D F +K ++++ R Q +P
Sbjct: 56 KFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQR----QASPN 111
Query: 117 LILA---NKQDLPD--AVSADELARYLD 139
+++A NK DL + AV E Y D
Sbjct: 112 IVIALSGNKADLANKRAVDFQEAQSYAD 139
>pdb|1N6H|A Chain A, Crystal Structure Of Human Rab5a
pdb|1R2Q|A Chain A, Crystal Structure Of Human Rab5a Gtpase Domain At 1.05 A
Resolution
Length = 170
Score = 37.4 bits (85), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 39/88 (44%), Gaps = 9/88 (10%)
Query: 57 KLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPL 116
K WD GQ S+ YY A A + V D F +K ++++ R Q +P
Sbjct: 56 KFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQR----QASPN 111
Query: 117 LILA---NKQDLPD--AVSADELARYLD 139
+++A NK DL + AV E Y D
Sbjct: 112 IVIALSGNKADLANKRAVDFQEAQSYAD 139
>pdb|1TU3|A Chain A, Crystal Structure Of Rab5 Complex With Rabaptin5
C-Terminal Domain
pdb|1TU3|B Chain B, Crystal Structure Of Rab5 Complex With Rabaptin5
C-Terminal Domain
pdb|1TU3|C Chain C, Crystal Structure Of Rab5 Complex With Rabaptin5
C-Terminal Domain
pdb|1TU3|D Chain D, Crystal Structure Of Rab5 Complex With Rabaptin5
C-Terminal Domain
pdb|1TU3|E Chain E, Crystal Structure Of Rab5 Complex With Rabaptin5
C-Terminal Domain
Length = 171
Score = 37.4 bits (85), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 39/88 (44%), Gaps = 9/88 (10%)
Query: 57 KLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPL 116
K WD GQ S+ YY A A + V D F +K ++++ R Q +P
Sbjct: 57 KFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQR----QASPN 112
Query: 117 LILA---NKQDLPD--AVSADELARYLD 139
+++A NK DL + AV E Y D
Sbjct: 113 IVIALSGNKADLANKRAVDFQEAQSYAD 140
>pdb|3BRW|D Chain D, Structure Of The Rap-Rapgap Complex
pdb|3CF6|R Chain R, Structure Of Epac2 In Complex With Cyclic-Amp And Rap
Length = 167
Score = 37.4 bits (85), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 22/99 (22%), Positives = 43/99 (43%), Gaps = 3/99 (3%)
Query: 32 VEGLPPDRIVPTVGLNIGR---IEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVID 88
V+G+ ++ PT+ + + ++ L D G ++ + Y + V
Sbjct: 24 VQGIFVEKYDPTIEDSYRKQVEVDAQQCMLEILDTAGTEQFTAMRDLYMKNGQGFALVYS 83
Query: 89 AACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPD 127
S F D + E++LR +D P++++ NK DL D
Sbjct: 84 ITAQSTFNDLQDLREQILRVKDTDDVPMILVGNKCDLED 122
>pdb|4DSO|A Chain A, Small-Molecule Ligands Bind To A Distinct Pocket In Ras
And Inhibit Sos-Mediated Nucleotide Exchange Activity
pdb|4DST|A Chain A, Small-Molecule Ligands Bind To A Distinct Pocket In Ras
And Inhibit Sos-Mediated Nucleotide Exchange Activity
pdb|4DSU|A Chain A, Small-Molecule Ligands Bind To A Distinct Pocket In Ras
And Inhibit Sos-Mediated Nucleotide Exchange Activity
pdb|4DSN|A Chain A, Small-Molecule Ligands Bind To A Distinct Pocket In Ras
And Inhibit Sos-Mediated Nucleotide Exchange Activity
Length = 189
Score = 37.4 bits (85), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 37/83 (44%), Gaps = 4/83 (4%)
Query: 58 LVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLL 117
L D GQ ++ ++Y + V FED E++ R +D + P++
Sbjct: 54 LDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMV 113
Query: 118 ILANKQDLP----DAVSADELAR 136
++ NK DLP D A +LAR
Sbjct: 114 LVGNKCDLPSRTVDTKQAQDLAR 136
>pdb|2IL1|A Chain A, Crystal Structure Of A Predicted Human Gtpase In Complex
With Gdp
Length = 192
Score = 37.4 bits (85), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 40/86 (46%), Gaps = 5/86 (5%)
Query: 43 TVGLN--IGRIEVSNSK--LVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDS 98
TVG++ I +E+ K L WD GQ SI YY A ++ V D F+D
Sbjct: 58 TVGVDFKIKTVELRGKKIRLQIWDTAGQERFNSITSAYYRSAKGIILVYDITKKETFDDL 117
Query: 99 KTALEKVLRNEDLQGAPLLILANKQD 124
+ K++ + A LL++ NK D
Sbjct: 118 PKWM-KMIDKYASEDAELLLVGNKLD 142
>pdb|4DXA|A Chain A, Co-Crystal Structure Of Rap1 In Complex With Krit1
Length = 169
Score = 37.4 bits (85), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 22/99 (22%), Positives = 43/99 (43%), Gaps = 3/99 (3%)
Query: 32 VEGLPPDRIVPTVGLNIGR---IEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVID 88
V+G+ ++ PT+ + + ++ L D G ++ + Y + V
Sbjct: 26 VQGIFVEKYDPTIEDSYRKQVEVDAQQCMLEILDTAGTEQFTAMRDLYMKNGQGFALVYS 85
Query: 89 AACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPD 127
S F D + E++LR +D P++++ NK DL D
Sbjct: 86 ITAQSTFNDLQDLREQILRVKDTDDVPMILVGNKCDLED 124
>pdb|4FID|A Chain A, Crystal Structure Of A Heterotrimeric G-Protein Subunit
From Entamoeba Histolytica, Ehg-Alpha-1
pdb|4FID|B Chain B, Crystal Structure Of A Heterotrimeric G-Protein Subunit
From Entamoeba Histolytica, Ehg-Alpha-1
Length = 340
Score = 37.4 bits (85), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 31/121 (25%), Positives = 48/121 (39%), Gaps = 21/121 (17%)
Query: 26 KSVYSNVEGLPPDRIVPT-----------VGLNIGRIEVSNSKLVFWDLGGQPGLRSIWE 74
K ++ NV+ + + VPT G++ V + D+GGQ R W
Sbjct: 120 KYLFENVKRIAXEDYVPTEEDLIHNRTKTTGIHEYDFVVKDIPFHLIDVGGQRSERKXWV 179
Query: 75 KYYEEAHAVVFVIDAA----------CPSRFEDSKTALEKVLRNEDLQGAPLLILANKQD 124
++ + +FV A SR +S + + NE L+GA LI NK D
Sbjct: 180 SFFSDVDCAIFVTSLAEYDXKLYEDGNTSRLTESIAVFKDIXTNEFLKGAVKLIFLNKXD 239
Query: 125 L 125
L
Sbjct: 240 L 240
>pdb|1Z0F|A Chain A, Gdp-Bound Rab14 Gtpase
Length = 179
Score = 37.4 bits (85), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 38/87 (43%), Gaps = 5/87 (5%)
Query: 43 TVGLNIGR--IEVSNSK--LVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDS 98
T+G+ G IEVS K L WD GQ R++ YY A + V D S +
Sbjct: 47 TIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHL 106
Query: 99 KTALEKVLRNEDLQGAPLLILANKQDL 125
+ L RN ++++ NK DL
Sbjct: 107 SSWLTDA-RNLTNPNTVIILIGNKADL 132
>pdb|4DRZ|A Chain A, Crystal Structure Of Human Rab14
Length = 196
Score = 37.0 bits (84), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 38/87 (43%), Gaps = 5/87 (5%)
Query: 43 TVGLNIGR--IEVSNSK--LVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDS 98
T+G+ G IEVS K L WD GQ R++ YY A + V D S +
Sbjct: 62 TIGVEFGTRIIEVSGQKIKLQIWDTAGQGRFRAVTRSYYRGAAGALMVYDITRRSTYNHL 121
Query: 99 KTALEKVLRNEDLQGAPLLILANKQDL 125
+ L RN ++++ NK DL
Sbjct: 122 SSWLTDA-RNLTNPNTVIILIGNKADL 147
>pdb|1ZBD|A Chain A, Structural Basis Of Rab Effector Specificity: Crystal
Structure Of The Small G Protein Rab3a Complexed With
The Effector Domain Of Rabphilin-3a
Length = 203
Score = 37.0 bits (84), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 44/156 (28%), Positives = 66/156 (42%), Gaps = 20/156 (12%)
Query: 41 VPTVGLNIGRIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKT 100
V T+ N RI KL WD G R+I YY A + D F ++
Sbjct: 47 VKTIYRNDKRI-----KLQIWDTAGLERYRTITTAYYRGAXGFILXYDITNEESF-NAVQ 100
Query: 101 ALEKVLRNEDLQGAPLLILANKQDLPD--AVSAD---ELARYLDLKKLDERVCMFEAVSG 155
++ A +L++ NK D D VS++ +LA +L + FEA S
Sbjct: 101 DWSTQIKTYSWDNAQVLLVGNKCDXEDERVVSSERGRQLADHLGFE-------FFEA-SA 152
Query: 156 YDGFGIKESVEWLVEVMERSKRTEMLRARAGASTGS 191
D +K++ E LV+V+ K +E L A TG+
Sbjct: 153 KDNINVKQTFERLVDVI-CEKXSESLDTADPAVTGA 187
>pdb|1VG1|A Chain A, Gdp-bound Rab7
pdb|1VG9|B Chain B, The Crystal Structures Of The Rep-1 Protein In Complex
With C-Terminally Truncated Rab7 Protein
pdb|1VG9|D Chain D, The Crystal Structures Of The Rep-1 Protein In Complex
With C-Terminally Truncated Rab7 Protein
pdb|1VG9|F Chain F, The Crystal Structures Of The Rep-1 Protein In Complex
With C-Terminally Truncated Rab7 Protein
pdb|1VG9|H Chain H, The Crystal Structures Of The Rep-1 Protein In Complex
With C-Terminally Truncated Rab7 Protein
Length = 185
Score = 36.6 bits (83), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 37/82 (45%), Gaps = 3/82 (3%)
Query: 58 LVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRN---EDLQGA 114
+ WD GQ +S+ +Y A V V D P+ F+ + ++ L D +
Sbjct: 59 MQIWDTAGQERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENF 118
Query: 115 PLLILANKQDLPDAVSADELAR 136
P ++L NK DL + A + A+
Sbjct: 119 PFVVLGNKIDLENRQVATKRAQ 140
>pdb|1YZT|A Chain A, Gppnhp-Bound Rab21 Gtpase At 2.05 A Resolution
pdb|1YZT|B Chain B, Gppnhp-Bound Rab21 Gtpase At 2.05 A Resolution
Length = 184
Score = 36.6 bits (83), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 38/86 (44%), Gaps = 10/86 (11%)
Query: 43 TVGLNIGRIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKT-- 100
T LNIG V+ L WD GQ ++ YY +++ + V D F+ K
Sbjct: 59 TKKLNIGGKRVN---LAIWDTAGQERFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWV 115
Query: 101 -ALEKVLRNEDLQGAPLLILANKQDL 125
L K+L NE L I+ NK DL
Sbjct: 116 KELRKMLGNE----ICLCIVGNKIDL 137
>pdb|1YZU|A Chain A, Gppnhp-Bound Rab21 Gtpase At 2.50 A Resolution
pdb|1YZU|B Chain B, Gppnhp-Bound Rab21 Gtpase At 2.50 A Resolution
pdb|1Z0I|A Chain A, Gdp-Bound Rab21 Gtpase
pdb|2OT3|B Chain B, Crystal Structure Of Rabex-5 Vps9 Domain In Complex With
Nucleotide Free Rab21
Length = 170
Score = 36.6 bits (83), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 38/86 (44%), Gaps = 10/86 (11%)
Query: 43 TVGLNIGRIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKT-- 100
T LNIG V+ L WD GQ ++ YY +++ + V D F+ K
Sbjct: 45 TKKLNIGGKRVN---LAIWDTAGQERFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWV 101
Query: 101 -ALEKVLRNEDLQGAPLLILANKQDL 125
L K+L NE L I+ NK DL
Sbjct: 102 KELRKMLGNE----ICLCIVGNKIDL 123
>pdb|1VG0|B Chain B, The Crystal Structures Of The Rep-1 Protein In Complex
With Monoprenylated Rab7 Protein
pdb|1VG8|A Chain A, Gppnhp-Bound Rab7
pdb|1VG8|B Chain B, Gppnhp-Bound Rab7
pdb|1VG8|C Chain C, Gppnhp-Bound Rab7
pdb|1VG8|D Chain D, Gppnhp-Bound Rab7
Length = 207
Score = 36.2 bits (82), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 37/82 (45%), Gaps = 3/82 (3%)
Query: 58 LVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVL---RNEDLQGA 114
+ WD GQ +S+ +Y A V V D P+ F+ + ++ L D +
Sbjct: 59 MQIWDTAGQERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENF 118
Query: 115 PLLILANKQDLPDAVSADELAR 136
P ++L NK DL + A + A+
Sbjct: 119 PFVVLGNKIDLENRQVATKRAQ 140
>pdb|1HUQ|A Chain A, 1.8a Crystal Structure Of The Monomeric Gtpase Rab5c
(Mouse)
Length = 164
Score = 36.2 bits (82), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 38/88 (43%), Gaps = 9/88 (10%)
Query: 57 KLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPL 116
K WD GQ S+ YY A A + V D F +K ++++ R Q +P
Sbjct: 53 KFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNTDTFARAKNWVKELQR----QASPN 108
Query: 117 LILA---NKQDLPD--AVSADELARYLD 139
+++A NK DL AV E Y D
Sbjct: 109 IVIALAGNKADLASKRAVEFQEAQAYAD 136
>pdb|1Z07|A Chain A, Gppnhp-Bound Rab5c G55q Mutant Gtpase
Length = 166
Score = 36.2 bits (82), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 38/88 (43%), Gaps = 9/88 (10%)
Query: 57 KLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPL 116
K WD GQ S+ YY A A + V D F +K ++++ R Q +P
Sbjct: 55 KFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNTDTFARAKNWVKELQR----QASPN 110
Query: 117 LILA---NKQDLPD--AVSADELARYLD 139
+++A NK DL AV E Y D
Sbjct: 111 IVIALAGNKADLASKRAVEFQEAQAYAD 138
>pdb|1YVD|A Chain A, Gppnhp-Bound Rab22 Gtpase
Length = 169
Score = 36.2 bits (82), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 27/95 (28%), Positives = 44/95 (46%), Gaps = 11/95 (11%)
Query: 40 IVPTVGLNI--GRIEVSN--SKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRF 95
I PT+G + ++ N K + WD GQ R++ YY + A + V D
Sbjct: 34 INPTIGASFMTKTVQYQNELHKFLIWDTAGQERFRALAPMYYRGSAAAIIVYDITK---- 89
Query: 96 EDSKTALEKVLRNEDLQGAPLLILA---NKQDLPD 127
E++ + L+ +R G P +++A NK DL D
Sbjct: 90 EETFSTLKNWVRELRQHGPPSIVVAIAGNKCDLTD 124
>pdb|2BMD|A Chain A, High Resolution Structure Of Gdp-Bound Human Rab4a
pdb|2BME|A Chain A, High Resolution Structure Of Gppnhp-Bound Human Rab4a
pdb|2BME|B Chain B, High Resolution Structure Of Gppnhp-Bound Human Rab4a
pdb|2BME|C Chain C, High Resolution Structure Of Gppnhp-Bound Human Rab4a
pdb|2BME|D Chain D, High Resolution Structure Of Gppnhp-Bound Human Rab4a
Length = 186
Score = 36.2 bits (82), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 43/164 (26%), Positives = 69/164 (42%), Gaps = 17/164 (10%)
Query: 32 VEGLPPDRIVPTVGLNIGR--IEVSNS--KLVFWDLGGQPGLRSIWEKYYEEAHAVVFVI 87
+E D T+G+ G I V KL WD GQ RS+ YY A + V
Sbjct: 31 IEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQERFRSVTRSYYRGAAGALLVY 90
Query: 88 DAACPSRFEDSKTALEKVLRNEDL---QGAPLLILANKQDLPDAVSADELARYLDLKKL- 143
D SR ++ AL L + + Q +++ NK+DL AD +L+ +
Sbjct: 91 D--ITSR--ETYNALTNWLTDARMLASQNIVIILCGNKKDLD----ADREVTFLEASRFA 142
Query: 144 DERVCMFEAVSGYDGFGIKES-VEWLVEVMERSKRTEMLRARAG 186
E MF S G ++E+ V+ +++ + + E+ R G
Sbjct: 143 QENELMFLETSALTGENVEEAFVQCARKILNKIESGELDPERMG 186
>pdb|3T12|A Chain A, Mgla In Complex With Mglb In Transition State
pdb|3T1O|A Chain A, Mgla Bound To Gdp
pdb|3T1O|B Chain B, Mgla Bound To Gdp
pdb|3T1Q|A Chain A, Mgla Bound To Gppnhp In Complex With Mglb
Length = 198
Score = 35.8 bits (81), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 30/126 (23%), Positives = 62/126 (49%), Gaps = 10/126 (7%)
Query: 46 LNIGRIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKV 105
L+IG ++ ++ + + GQ + + +VFV D+A P+R + ++ +
Sbjct: 64 LDIGEVKGFKTRFHLYTVPGQVFYNASRKLILRGVDGIVFVADSA-PNRLRANAESMRNM 122
Query: 106 LRNE-----DLQGAPLLILANKQDLPDAVSADELARYLDLKKLDERVCMFEAVSGYDGFG 160
N L P++I NK+DLPDA+ + + +D + + + EAV+ +G G
Sbjct: 123 RENLAEYGLTLDDVPIVIQVNKRDLPDALPVEMVRAVVD---PEGKFPVLEAVA-TEGKG 178
Query: 161 IKESVE 166
+ E+++
Sbjct: 179 VFETLK 184
>pdb|1YZK|A Chain A, Gppnhp Bound Rab11 Gtpase
Length = 184
Score = 35.8 bits (81), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 36/79 (45%), Gaps = 3/79 (3%)
Query: 57 KLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPL 116
K WD GQ R+I YY A + V D A +E+ + L K LR+ +
Sbjct: 70 KAQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWL-KELRDHADSNIVI 128
Query: 117 LILANKQDLPD--AVSADE 133
+++ NK DL AV DE
Sbjct: 129 MLVGNKSDLRHLRAVPTDE 147
>pdb|3GFT|A Chain A, Human K-Ras In Complex With A Gtp Analogue
pdb|3GFT|B Chain B, Human K-Ras In Complex With A Gtp Analogue
pdb|3GFT|C Chain C, Human K-Ras In Complex With A Gtp Analogue
pdb|3GFT|D Chain D, Human K-Ras In Complex With A Gtp Analogue
pdb|3GFT|E Chain E, Human K-Ras In Complex With A Gtp Analogue
pdb|3GFT|F Chain F, Human K-Ras In Complex With A Gtp Analogue
Length = 187
Score = 35.8 bits (81), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 22/83 (26%), Positives = 36/83 (43%), Gaps = 4/83 (4%)
Query: 58 LVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLL 117
L D G ++ ++Y + V FED E++ R +D + P++
Sbjct: 71 LDILDTAGHEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMV 130
Query: 118 ILANKQDLP----DAVSADELAR 136
++ NK DLP D A +LAR
Sbjct: 131 LVGNKCDLPSRTVDTKQAQDLAR 153
>pdb|1OIV|A Chain A, X-Ray Structure Of The Small G Protein Rab11a In Complex
With Gdp
pdb|1OIV|B Chain B, X-Ray Structure Of The Small G Protein Rab11a In Complex
With Gdp
Length = 191
Score = 35.4 bits (80), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 36/79 (45%), Gaps = 3/79 (3%)
Query: 57 KLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPL 116
K WD GQ R+I YY A + V D A +E+ + L K LR+ +
Sbjct: 79 KAQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWL-KELRDHADSNIVI 137
Query: 117 LILANKQDLPD--AVSADE 133
+++ NK DL AV DE
Sbjct: 138 MLVGNKSDLRHLRAVPTDE 156
>pdb|2F9L|A Chain A, 3d Structure Of Inactive Human Rab11b Gtpase
pdb|2F9M|A Chain A, 3d Structure Of Active Human Rab11b Gtpase
Length = 199
Score = 35.4 bits (80), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 34/132 (25%), Positives = 54/132 (40%), Gaps = 8/132 (6%)
Query: 57 KLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPL 116
K WD GQ R I YY A + V D A +E+ + L K LR+ +
Sbjct: 55 KAQIWDTAGQERYRRITSAYYRGAVGALLVYDIAKHLTYENVERWL-KELRDHADSNIVI 113
Query: 117 LILANKQDLPD--AVSADELARYLDLKKLDERVCMFEAVSGYDGFGIKESVEWLVEVMER 174
+++ NK DL AV DE + + L F S D ++E+ + ++ + R
Sbjct: 114 MLVGNKSDLRHLRAVPTDEARAFAEKNNLS-----FIETSALDSTNVEEAFKNILTEIYR 168
Query: 175 SKRTEMLRARAG 186
+ + RA
Sbjct: 169 IVSQKQIADRAA 180
>pdb|1YU9|A Chain A, Gppnhp-Bound Rab4a
Length = 175
Score = 35.0 bits (79), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 37/130 (28%), Positives = 55/130 (42%), Gaps = 16/130 (12%)
Query: 43 TVGLNIGR--IEVSNS--KLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDS 98
T+G+ G I V KL WD GQ RS+ YY A + V D SR ++
Sbjct: 43 TIGVEFGSKIINVGGKYVKLQIWDTAGQERFRSVTRSYYRGAAGALLVYD--ITSR--ET 98
Query: 99 KTALEKVLRNEDL---QGAPLLILANKQDLPDAVSADELARYLDLKKL-DERVCMFEAVS 154
AL L + + Q +++ NK+DL AD +L+ + E MF S
Sbjct: 99 YNALTNWLTDARMLASQNIVIILCGNKKDLD----ADREVTFLEASRFAQENELMFLETS 154
Query: 155 GYDGFGIKES 164
G ++E+
Sbjct: 155 ALTGEDVEEA 164
>pdb|3SN6|A Chain A, Crystal Structure Of The Beta2 Adrenergic Receptor-Gs
Protein Complex
Length = 380
Score = 35.0 bits (79), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 21/95 (22%), Positives = 44/95 (46%), Gaps = 10/95 (10%)
Query: 41 VPTVGLNIGRIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAAC--------- 91
V T G+ + +V +D+GGQ R W + + + A++FV+ ++
Sbjct: 188 VLTSGIFETKFQVDKVNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVASSSYNMVIREDN 247
Query: 92 -PSRFEDSKTALEKVLRNEDLQGAPLLILANKQDL 125
+R +++ + + N L+ +++ NKQDL
Sbjct: 248 QTNRLQEALNLFKSIWNNRWLRTISVILFLNKQDL 282
>pdb|3BC1|A Chain A, Crystal Structure Of The Complex Rab27a-slp2a
pdb|3BC1|E Chain E, Crystal Structure Of The Complex Rab27a-slp2a
Length = 195
Score = 35.0 bits (79), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 35/174 (20%), Positives = 74/174 (42%), Gaps = 26/174 (14%)
Query: 24 KLKSVYSNVEGLPPDRIVPTVGLN----------------IGRIEVSNSKLVFWDLGGQP 67
K +Y +G + + TVG++ +GR + L WD G
Sbjct: 24 KTSVLYQYTDGKFNSKFITTVGIDFREKRVVYRANGPDGAVGRGQ--RIHLQLWDTAGLE 81
Query: 68 GLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPD 127
RS+ ++ +A + + D F + + + ++ + + +++ NK DL D
Sbjct: 82 RFRSLTTAFFRDAMGFLLLFDLTNEQSFLNVRNWISQLQMHAYSENPDIVLCGNKSDLED 141
Query: 128 AVSADELARYLDLKKLDER--VCMFEAVSGYDGFGIKESVEWLVE-VMERSKRT 178
+ E + ++L E+ + FE S +G I ++E L++ +M+R +R+
Sbjct: 142 QRAVKE----EEARELAEKYGIPYFE-TSAANGTNISHAIEMLLDLIMKRMERS 190
>pdb|1CUL|C Chain C, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With
2',5'-Dideoxy-Adenosine 3'- Triphosphate And Mg
Length = 380
Score = 35.0 bits (79), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 21/95 (22%), Positives = 44/95 (46%), Gaps = 10/95 (10%)
Query: 41 VPTVGLNIGRIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAAC--------- 91
V T G+ + +V +D+GGQ R W + + + A++FV+ ++
Sbjct: 188 VLTSGIFETKFQVDKVNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVASSSYNMVIREDN 247
Query: 92 -PSRFEDSKTALEKVLRNEDLQGAPLLILANKQDL 125
+R +++ + + N L+ +++ NKQDL
Sbjct: 248 QTNRLQEALNLFKSIWNNRWLRTISVILFLNKQDL 282
>pdb|3LAW|A Chain A, Structure Of Gtp-Bound L129f Mutant Rab7
pdb|3LAW|B Chain B, Structure Of Gtp-Bound L129f Mutant Rab7
pdb|3LAW|C Chain C, Structure Of Gtp-Bound L129f Mutant Rab7
pdb|3LAW|D Chain D, Structure Of Gtp-Bound L129f Mutant Rab7
pdb|3LAW|E Chain E, Structure Of Gtp-Bound L129f Mutant Rab7
Length = 207
Score = 35.0 bits (79), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 21/82 (25%), Positives = 36/82 (43%), Gaps = 3/82 (3%)
Query: 58 LVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVL---RNEDLQGA 114
+ WD GQ +S+ +Y A V V D P+ F+ + ++ L D +
Sbjct: 59 MQIWDTAGQERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENF 118
Query: 115 PLLILANKQDLPDAVSADELAR 136
P ++L NK D + A + A+
Sbjct: 119 PFVVLGNKIDFENRQVATKRAQ 140
>pdb|1CJK|C Chain C, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With Adenosine
5'-(Alpha Thio)-Triphosphate (Rp), Mg, And Mn
pdb|1CJT|C Chain C, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With
Beta-L-2',3'-Dideoxyatp, Mn, And Mg
pdb|1CJU|C Chain C, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With
Beta-L-2',3'-Dideoxyatp And Mg
pdb|1CJV|C Chain C, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With
Beta-L-2',3'-Dideoxyatp, Mg, And Zn
pdb|1TL7|C Chain C, Complex Of Gs- With The Catalytic Domains Of Mammalian
Adenylyl Cyclase: Complex With 2'(3')-O-(N-
Methylanthraniloyl)-Guanosine 5'-Triphosphate And Mn
Length = 402
Score = 34.7 bits (78), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 21/95 (22%), Positives = 44/95 (46%), Gaps = 10/95 (10%)
Query: 41 VPTVGLNIGRIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAAC--------- 91
V T G+ + +V +D+GGQ R W + + + A++FV+ ++
Sbjct: 202 VLTSGIFETKFQVDKVNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVASSSYNMVIREDN 261
Query: 92 -PSRFEDSKTALEKVLRNEDLQGAPLLILANKQDL 125
+R +++ + + N L+ +++ NKQDL
Sbjct: 262 QTNRLQEALNLFKSIWNNRWLRTISVILFLNKQDL 296
>pdb|1CS4|C Chain C, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With
2'-Deoxy-Adenosine 3'- Monophosphate, Pyrophosphate And
Mg
pdb|1U0H|C Chain C, Structural Basis For The Inhibition Of Mammalian Adenylyl
Cyclase By Mant-gtp
pdb|2GVD|C Chain C, Complex Of Gs- With The Catalytic Domains Of Mammalian
Adenylyl Cyclase: Complex With Tnp-Atp And Mn
pdb|2GVZ|C Chain C, Crystal Structure Of Complex Of Gs- With The Catalytic
Domains Of Mammalian Adenylyl Cyclase: Complex With
Mant- Atp And Mn
pdb|3G82|C Chain C, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With Mant-Itp And Mn
pdb|3MAA|C Chain C, Complex Of Gs-alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With Adenosine
5-o-(l-thiophosphate) And Low Ca Concentration
Length = 394
Score = 34.7 bits (78), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 21/95 (22%), Positives = 44/95 (46%), Gaps = 10/95 (10%)
Query: 41 VPTVGLNIGRIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAAC--------- 91
V T G+ + +V +D+GGQ R W + + + A++FV+ ++
Sbjct: 202 VLTSGIFETKFQVDKVNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVASSSYNMVIREDN 261
Query: 92 -PSRFEDSKTALEKVLRNEDLQGAPLLILANKQDL 125
+R +++ + + N L+ +++ NKQDL
Sbjct: 262 QTNRLQEALNLFKSIWNNRWLRTISVILFLNKQDL 296
>pdb|1AZS|C Chain C, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase
pdb|1AZT|A Chain A, Gs-Alpha Complexed With Gtp-Gamma-S
pdb|1AZT|B Chain B, Gs-Alpha Complexed With Gtp-Gamma-S
pdb|3C14|C Chain C, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With Pyrophosphate
And Ca
pdb|3C15|C Chain C, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With Pyrophosphate
And Mg
pdb|3C16|C Chain C, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With
Adenosine-5'-Triphosphate And Ca
Length = 402
Score = 34.7 bits (78), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 21/95 (22%), Positives = 44/95 (46%), Gaps = 10/95 (10%)
Query: 41 VPTVGLNIGRIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAAC--------- 91
V T G+ + +V +D+GGQ R W + + + A++FV+ ++
Sbjct: 202 VLTSGIFETKFQVDKVNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVASSSYNMVIREDN 261
Query: 92 -PSRFEDSKTALEKVLRNEDLQGAPLLILANKQDL 125
+R +++ + + N L+ +++ NKQDL
Sbjct: 262 QTNRLQEALNLFKSIWNNRWLRTISVILFLNKQDL 296
>pdb|3T1T|A Chain A, Mgla Bound To Gdp In P1 Tetrameric Arrangement
pdb|3T1T|B Chain B, Mgla Bound To Gdp In P1 Tetrameric Arrangement
pdb|3T1T|C Chain C, Mgla Bound To Gdp In P1 Tetrameric Arrangement
pdb|3T1T|D Chain D, Mgla Bound To Gdp In P1 Tetrameric Arrangement
pdb|3T1V|A Chain A, Mgla Bound To Gdp In P2(1) Tetrameric Arrangement
pdb|3T1V|B Chain B, Mgla Bound To Gdp In P2(1) Tetrameric Arrangement
pdb|3T1V|C Chain C, Mgla Bound To Gdp In P2(1) Tetrameric Arrangement
pdb|3T1V|D Chain D, Mgla Bound To Gdp In P2(1) Tetrameric Arrangement
Length = 198
Score = 34.3 bits (77), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 30/126 (23%), Positives = 60/126 (47%), Gaps = 10/126 (7%)
Query: 46 LNIGRIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKV 105
L+IG ++ ++ + + GQ + + +VFV D+A P+R + +
Sbjct: 64 LDIGEVKGFKTRFHLYTVPGQVFYNASRKLILRGVDGIVFVADSA-PNRLRANAESXRNX 122
Query: 106 LRNE-----DLQGAPLLILANKQDLPDAVSADELARYLDLKKLDERVCMFEAVSGYDGFG 160
N L P++I NK+DLPDA+ + + +D + + + EAV+ +G G
Sbjct: 123 RENLAEYGLTLDDVPIVIQVNKRDLPDALPVEXVRAVVD---PEGKFPVLEAVA-TEGKG 178
Query: 161 IKESVE 166
+ E+++
Sbjct: 179 VFETLK 184
>pdb|1EK0|A Chain A, Gppnhp-Bound Ypt51 At 1.48 A Resolution
Length = 170
Score = 34.3 bits (77), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 30/121 (24%), Positives = 50/121 (41%), Gaps = 5/121 (4%)
Query: 42 PTVGLNI--GRIEVSNSKLVF--WDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFED 97
PT+G R+ ++ + F WD GQ S+ YY A A + V D P F
Sbjct: 34 PTIGAAFLTQRVTINEHTVKFEIWDTAGQERFASLAPXYYRNAQAALVVYDVTKPQSFIK 93
Query: 98 SKTALEKVLRNEDLQGAPLLILANKQDLPDAVSADELARYLDLKKLDERVCMFEAVSGYD 157
++ + K L + + + ++ NK D ++AR K +E+ +F S
Sbjct: 94 ARHWV-KELHEQASKDIIIALVGNKIDXLQEGGERKVAREEGEKLAEEKGLLFFETSAKT 152
Query: 158 G 158
G
Sbjct: 153 G 153
>pdb|2HXS|A Chain A, Crystal Structure Of Rab28a Gtpase In The Inactive
(Gdp-3'p- Bound) Form
pdb|3E5H|A Chain A, Crystal Structure Of Rab28 Gtpase In The Active
(Gppnhp-Bound) Form
Length = 178
Score = 34.3 bits (77), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 37/75 (49%), Gaps = 6/75 (8%)
Query: 55 NSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRF---EDSKTALEKVLRNEDL 111
N L WD+GGQ + +KY A V+ V D F ED T ++KV +E+
Sbjct: 55 NVTLQIWDIGGQTIGGKMLDKYIYGAQGVLLVYDITNYQSFENLEDWYTVVKKV--SEES 112
Query: 112 QGAPLLIL-ANKQDL 125
+ PL+ L NK DL
Sbjct: 113 ETQPLVALVGNKIDL 127
>pdb|3C7K|A Chain A, Molecular Architecture Of Galphao And The Structural Basis
For Rgs16-Mediated Deactivation
pdb|3C7K|C Chain C, Molecular Architecture Of Galphao And The Structural Basis
For Rgs16-Mediated Deactivation
Length = 333
Score = 34.3 bits (77), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 20/95 (21%), Positives = 38/95 (40%), Gaps = 10/95 (10%)
Query: 41 VPTVGLNIGRIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVI----------DAA 90
V T G+ N +D+GGQ R W +E+ A++F + +
Sbjct: 159 VKTTGIVETHFTFKNLHFRLFDVGGQRSERKKWIHCFEDVTAIIFCVALSGYDQVLHEDE 218
Query: 91 CPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDL 125
+R +S + + N+ +++ NK+DL
Sbjct: 219 TTNRMHESLMLFDSICNNKFFIDTSIILFLNKKDL 253
>pdb|3CON|A Chain A, Crystal Structure Of The Human Nras Gtpase Bound With Gdp
Length = 190
Score = 34.3 bits (77), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 22/83 (26%), Positives = 35/83 (42%), Gaps = 4/83 (4%)
Query: 58 LVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLL 117
L D GQ ++ ++Y + V F D E++ R +D P++
Sbjct: 71 LDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNSKSFADINLYREQIKRVKDSDDVPMV 130
Query: 118 ILANKQDLP----DAVSADELAR 136
++ NK DLP D A ELA+
Sbjct: 131 LVGNKCDLPTRTVDTKQAHELAK 153
>pdb|3OHM|A Chain A, Crystal Structure Of Activated G Alpha Q Bound To Its
Effector Phospholipase C Beta 3
Length = 327
Score = 33.9 bits (76), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 21/95 (22%), Positives = 43/95 (45%), Gaps = 10/95 (10%)
Query: 41 VPTVGLNIGRIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVI----------DAA 90
VPT G+ ++ + D+GGQ R W +E +++F++ ++
Sbjct: 152 VPTTGIIEYPFDLQSVIFRMVDVGGQRSERRKWIHCFENVTSIMFLVALSEYDQVLVESD 211
Query: 91 CPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDL 125
+R E+SK ++ Q + +++ NK+DL
Sbjct: 212 NENRMEESKALFRTIITYPWFQNSSVILFLNKKDL 246
>pdb|2BCJ|Q Chain Q, Crystal Structure Of G Protein-coupled Receptor Kinase 2
In Complex With Galpha-q And Gbetagamma Subunits
pdb|2RGN|A Chain A, Crystal Structure Of P63rhogef Complex With Galpha-Q And
Rhoa
pdb|2RGN|D Chain D, Crystal Structure Of P63rhogef Complex With Galpha-Q And
Rhoa
Length = 353
Score = 33.9 bits (76), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 21/95 (22%), Positives = 43/95 (45%), Gaps = 10/95 (10%)
Query: 41 VPTVGLNIGRIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVI----------DAA 90
VPT G+ ++ + D+GGQ R W +E +++F++ ++
Sbjct: 178 VPTTGIIEYPFDLQSVIFRMVDVGGQRSERRKWIHCFENVTSIMFLVALSEYDQVLVESD 237
Query: 91 CPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDL 125
+R E+SK ++ Q + +++ NK+DL
Sbjct: 238 NENRMEESKALFRTIITYPWFQNSSVILFLNKKDL 272
>pdb|1LF0|A Chain A, Crystal Structure Of Rasa59g In The Gtp-Bound Form
pdb|1LF5|A Chain A, Crystal Structure Of Rasa59g In The Gdp-Bound Form
pdb|1NVU|Q Chain Q, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-Specific Nucleotide Exchange Factor Sos
pdb|1NVU|R Chain R, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-Specific Nucleotide Exchange Factor Sos
pdb|1NVX|Q Chain Q, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-Specific Nucleotide Exchange Factor Sos
pdb|1NVX|R Chain R, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-Specific Nucleotide Exchange Factor Sos
Length = 166
Score = 33.9 bits (76), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 22/83 (26%), Positives = 37/83 (44%), Gaps = 4/83 (4%)
Query: 58 LVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLL 117
L D GGQ ++ ++Y + V FED E++ R +D P++
Sbjct: 53 LDILDTGGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMV 112
Query: 118 ILANKQDLP----DAVSADELAR 136
++ NK DL ++ A +LAR
Sbjct: 113 LVGNKCDLAARTVESRQAQDLAR 135
>pdb|3AH8|A Chain A, Structure Of Heterotrimeric G Protein Galpha-Q Beta Gamma
In Complex With An Inhibitor Ym-254890
Length = 355
Score = 33.9 bits (76), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 21/95 (22%), Positives = 43/95 (45%), Gaps = 10/95 (10%)
Query: 41 VPTVGLNIGRIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVI----------DAA 90
VPT G+ ++ + D+GGQ R W +E +++F++ ++
Sbjct: 180 VPTTGIIEYPFDLQSVIFRMVDVGGQRSERRKWIHCFENVTSIMFLVALSEYDQVLVESD 239
Query: 91 CPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDL 125
+R E+SK ++ Q + +++ NK+DL
Sbjct: 240 NENRMEESKALFRTIITYPWFQNSSVILFLNKKDL 274
>pdb|4EKC|A Chain A, Structure Of Human Regulator Of G Protein Signaling 2
(rgs2) In Complex With Murine Galpha-q(r183c)
pdb|4EKC|C Chain C, Structure Of Human Regulator Of G Protein Signaling 2
(rgs2) In Complex With Murine Galpha-q(r183c)
pdb|4EKD|A Chain A, Structure Of Human Regulator Of G Protein Signaling 2
(rgs2) In Complex With Murine Galpha-q(r183c)
Length = 347
Score = 33.9 bits (76), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 21/95 (22%), Positives = 43/95 (45%), Gaps = 10/95 (10%)
Query: 41 VPTVGLNIGRIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVI----------DAA 90
VPT G+ ++ + D+GGQ R W +E +++F++ ++
Sbjct: 172 VPTTGIIEYPFDLQSVIFRMVDVGGQRSERRKWIHCFENVTSIMFLVALSEYDQVLVESD 231
Query: 91 CPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDL 125
+R E+SK ++ Q + +++ NK+DL
Sbjct: 232 NENRMEESKALFRTIITYPWFQNSSVILFLNKKDL 266
>pdb|4GNK|A Chain A, Crystal Structure Of Galphaq In Complex With Full-length
Human Plcbeta3
pdb|4GNK|C Chain C, Crystal Structure Of Galphaq In Complex With Full-length
Human Plcbeta3
Length = 353
Score = 33.9 bits (76), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 21/95 (22%), Positives = 43/95 (45%), Gaps = 10/95 (10%)
Query: 41 VPTVGLNIGRIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVI----------DAA 90
VPT G+ ++ + D+GGQ R W +E +++F++ ++
Sbjct: 178 VPTTGIIEYPFDLQSVIFRMVDVGGQRSERRKWIHCFENVTSIMFLVALSEYDQVLVESD 237
Query: 91 CPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDL 125
+R E+SK ++ Q + +++ NK+DL
Sbjct: 238 NENRMEESKALFRTIITYPWFQNSSVILFLNKKDL 272
>pdb|3MJH|A Chain A, Crystal Structure Of Human Rab5a In Complex With The C2h2
Zinc Finger Of Eea1
pdb|3MJH|C Chain C, Crystal Structure Of Human Rab5a In Complex With The C2h2
Zinc Finger Of Eea1
Length = 168
Score = 33.9 bits (76), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 38/88 (43%), Gaps = 9/88 (10%)
Query: 57 KLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPL 116
K WD G S+ YY A A + V D F +K ++++ R Q +P
Sbjct: 55 KFEIWDTAGLERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQR----QASPN 110
Query: 117 LILA---NKQDLPD--AVSADELARYLD 139
+++A NK DL + AV E Y D
Sbjct: 111 IVIALSGNKADLANKRAVDFQEAQSYAD 138
>pdb|1SHZ|A Chain A, Crystal Structure Of The P115rhogef Rgrgs Domain In A
Complex With Galpha(13):galpha(i1) Chimera
pdb|1SHZ|D Chain D, Crystal Structure Of The P115rhogef Rgrgs Domain In A
Complex With Galpha(13):galpha(i1) Chimera
Length = 340
Score = 33.5 bits (75), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 19/94 (20%), Positives = 39/94 (41%), Gaps = 10/94 (10%)
Query: 42 PTVGLNIGRIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVI----------DAAC 91
PT G++ + +D+GGQ R W + +E A++F + +
Sbjct: 166 PTKGIHETHFTFKDLHFKMFDVGGQRSERKKWFECFEGVTAIIFCVALSDYDQVLMEDRQ 225
Query: 92 PSRFEDSKTALEKVLRNEDLQGAPLLILANKQDL 125
+R +S + + N+ +++ NK+DL
Sbjct: 226 TNRMHESMKLFDSICNNKWFTDTSIILFLNKKDL 259
>pdb|1X3S|A Chain A, Crystal Structure Of Human Rab18 In Complex With Gppnhp
Length = 195
Score = 33.5 bits (75), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 14/45 (31%), Positives = 21/45 (46%)
Query: 51 IEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRF 95
++ + +KL WD GQ R++ YY A V+ V D F
Sbjct: 59 VDGNKAKLAIWDTAGQERFRTLTPSYYRGAQGVILVYDVTRRDTF 103
>pdb|2CLS|A Chain A, The Crystal Structure Of The Human Rnd1 Gtpase In The
Active Gtp Bound State
pdb|2CLS|B Chain B, The Crystal Structure Of The Human Rnd1 Gtpase In The
Active Gtp Bound State
Length = 198
Score = 33.1 bits (74), Expect = 0.086, Method: Compositional matrix adjust.
Identities = 30/95 (31%), Positives = 42/95 (44%), Gaps = 10/95 (10%)
Query: 37 PDRIVPTVGLNIG---RIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPS 93
P+ VPTV N E +L WD G P ++ Y ++ AV+ D S
Sbjct: 37 PETYVPTVFENYTACLETEEQRVELSLWDTSGSPYYDNVRPLCYSDSDAVLLCFDI---S 93
Query: 94 RFEDSKTALEKVLRNEDLQGAP---LLILANKQDL 125
R E +AL+K R E L P +L++ K DL
Sbjct: 94 RPETVDSALKK-WRTEILDYCPSTRVLLIGCKTDL 127
>pdb|3Q3J|B Chain B, Crystal Structure Of Plexin A2 Rbd In Complex With Rnd1
Length = 214
Score = 33.1 bits (74), Expect = 0.090, Method: Compositional matrix adjust.
Identities = 30/95 (31%), Positives = 42/95 (44%), Gaps = 10/95 (10%)
Query: 37 PDRIVPTVGLNIG---RIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPS 93
P+ VPTV N E +L WD G P ++ Y ++ AV+ D S
Sbjct: 53 PETYVPTVFENYTACLETEEQRVELSLWDTSGSPYYDNVRPLCYSDSDAVLLCFDI---S 109
Query: 94 RFEDSKTALEKVLRNEDLQGAP---LLILANKQDL 125
R E +AL+K R E L P +L++ K DL
Sbjct: 110 RPETVDSALKK-WRTEILDYCPSTRVLLIGCKTDL 143
>pdb|1U8Y|A Chain A, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And Rap
pdb|1U8Y|B Chain B, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And Rap
pdb|1U8Z|A Chain A, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And Rap
pdb|1U8Z|B Chain B, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And Rap
pdb|1U90|A Chain A, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And Rap
pdb|1U90|B Chain B, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And Rap
Length = 168
Score = 33.1 bits (74), Expect = 0.093, Method: Compositional matrix adjust.
Identities = 17/66 (25%), Positives = 29/66 (43%)
Query: 62 DLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILAN 121
D GQ +I + Y+ + V F + E++LR ++ + P L++ N
Sbjct: 58 DTAGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGN 117
Query: 122 KQDLPD 127
K DL D
Sbjct: 118 KSDLED 123
>pdb|2REX|B Chain B, Crystal Structure Of The Effector Domain Of Plxnb1 Bound
With Rnd1 Gtpase
pdb|2REX|D Chain D, Crystal Structure Of The Effector Domain Of Plxnb1 Bound
With Rnd1 Gtpase
Length = 197
Score = 33.1 bits (74), Expect = 0.093, Method: Compositional matrix adjust.
Identities = 30/95 (31%), Positives = 42/95 (44%), Gaps = 10/95 (10%)
Query: 37 PDRIVPTVGLNIG---RIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPS 93
P+ VPTV N E +L WD G P ++ Y ++ AV+ D S
Sbjct: 36 PETYVPTVFENYTACLETEEQRVELSLWDTSGSPYYDNVRPLCYSDSDAVLLCFDI---S 92
Query: 94 RFEDSKTALEKVLRNEDLQGAP---LLILANKQDL 125
R E +AL+K R E L P +L++ K DL
Sbjct: 93 RPETVDSALKK-WRTEILDYCPSTRVLLIGCKTDL 126
>pdb|2A78|A Chain A, Crystal Structure Of The C3bot-Rala Complex Reveals A
Novel Type Of Action Of A Bacterial Exoenzyme
pdb|2A9K|A Chain A, Crystal Structure Of The C3bot-Nad-Rala Complex Reveals A
Novel Type Of Action Of A Bacterial Exoenzyme
Length = 187
Score = 33.1 bits (74), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 17/66 (25%), Positives = 29/66 (43%)
Query: 62 DLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILAN 121
D GQ +I + Y+ + V F + E++LR ++ + P L++ N
Sbjct: 72 DTAGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGN 131
Query: 122 KQDLPD 127
K DL D
Sbjct: 132 KSDLED 137
>pdb|1UAD|A Chain A, Crystal Structure Of The Rala-gppnhp-sec5 Ral-binding
Domain Complex
pdb|1UAD|B Chain B, Crystal Structure Of The Rala-gppnhp-sec5 Ral-binding
Domain Complex
Length = 175
Score = 33.1 bits (74), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 17/66 (25%), Positives = 29/66 (43%)
Query: 62 DLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILAN 121
D GQ +I + Y+ + V F + E++LR ++ + P L++ N
Sbjct: 60 DTAGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGN 119
Query: 122 KQDLPD 127
K DL D
Sbjct: 120 KSDLED 125
>pdb|1Z0J|A Chain A, Structure Of Gtp-Bound Rab22q64l Gtpase In Complex With
The Minimal Rab Binding Domain Of Rabenosyn-5
Length = 170
Score = 33.1 bits (74), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 26/95 (27%), Positives = 43/95 (45%), Gaps = 11/95 (11%)
Query: 40 IVPTVGLNI--GRIEVSN--SKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRF 95
I PT+G + ++ N K + WD G R++ YY + A + V D
Sbjct: 35 INPTIGASFMTKTVQYQNELHKFLIWDTAGLERFRALAPMYYRGSAAAIIVYDITK---- 90
Query: 96 EDSKTALEKVLRNEDLQGAPLLILA---NKQDLPD 127
E++ + L+ +R G P +++A NK DL D
Sbjct: 91 EETFSTLKNWVRELRQHGPPSIVVAIAGNKCDLTD 125
>pdb|2BOV|A Chain A, Molecular Recognition Of An Adp-Ribosylating Clostridium
Botulinum C3 Exoenzyme By Rala Gtpase
Length = 206
Score = 32.7 bits (73), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 17/66 (25%), Positives = 29/66 (43%)
Query: 62 DLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILAN 121
D GQ +I + Y+ + V F + E++LR ++ + P L++ N
Sbjct: 68 DTAGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGN 127
Query: 122 KQDLPD 127
K DL D
Sbjct: 128 KSDLED 133
>pdb|3RAP|R Chain R, The Small G Protein Rap2 In A Non Catalytic Complex With
Gtp
pdb|3RAP|S Chain S, The Small G Protein Rap2 In A Non Catalytic Complex With
Gtp
pdb|1KAO|A Chain A, Crystal Structure Of The Small G Protein Rap2a With Gdp
pdb|2RAP|A Chain A, The Small G Protein Rap2a In Complex With Gtp
Length = 167
Score = 32.7 bits (73), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 17/75 (22%), Positives = 34/75 (45%)
Query: 51 IEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNED 110
++ S S L D G S+ + Y + + V F+D K ++++R +
Sbjct: 46 VDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFILVYSLVNQQSFQDIKPMRDQIIRVKR 105
Query: 111 LQGAPLLILANKQDL 125
+ P++++ NK DL
Sbjct: 106 YEKVPVILVGNKVDL 120
>pdb|3A58|B Chain B, Crystal Structure Of Sec3p - Rho1p Complex From
Saccharomyces Cerevisiae
pdb|3A58|D Chain D, Crystal Structure Of Sec3p - Rho1p Complex From
Saccharomyces Cerevisiae
pdb|3A58|F Chain F, Crystal Structure Of Sec3p - Rho1p Complex From
Saccharomyces Cerevisiae
Length = 188
Score = 32.7 bits (73), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 27/99 (27%), Positives = 45/99 (45%), Gaps = 6/99 (6%)
Query: 31 NVEGLPPDRIVPTVGLN-IGRIEVSNSK--LVFWDLGGQPGLRSIWEKYYEEAHAVVFVI 87
N +G P+ VPTV N + +EV + L WD GQ + Y +++ V+
Sbjct: 30 NSKGQFPEVYVPTVFENYVADVEVDGRRVELALWDTAGQEDYDRLRPLSYPDSNVVLICF 89
Query: 88 DAACPSRFEDSKTA-LEKVLRNEDLQGAPLLILANKQDL 125
P E+ + + +VL QG P++++ K DL
Sbjct: 90 SIDLPDSLENVQEKWIAEVLHF--CQGVPIILVGCKVDL 126
>pdb|1Z0D|A Chain A, Gdp-bound Rab5c Gtpase
pdb|1Z0D|C Chain C, Gdp-bound Rab5c Gtpase
Length = 167
Score = 32.7 bits (73), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 37/88 (42%), Gaps = 9/88 (10%)
Query: 57 KLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPL 116
K WD G S+ YY A A + V D F +K ++++ R Q +P
Sbjct: 55 KFEIWDTAGLERYHSLAPMYYRGAQAAIVVYDITNTDTFARAKNWVKELQR----QASPN 110
Query: 117 LILA---NKQDLPD--AVSADELARYLD 139
+++A NK DL AV E Y D
Sbjct: 111 IVIALAGNKADLASKRAVEFQEAQAYAD 138
>pdb|2BKU|A Chain A, Kap95p:rangtp Complex
pdb|2BKU|C Chain C, Kap95p:rangtp Complex
Length = 177
Score = 32.7 bits (73), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 19/93 (20%), Positives = 40/93 (43%), Gaps = 6/93 (6%)
Query: 39 RIVPTVGLNIGRIEVSNS----KLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSR 94
+ VPT+G+ + + + K WD GQ + + YY +A + + D
Sbjct: 38 KYVPTLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVT 97
Query: 95 FEDSKTALEKVLRNEDLQGAPLLILANKQDLPD 127
+++ ++R + P+++ NK D+ D
Sbjct: 98 YKNVPNWHRDLVR--VCENIPIVLCGNKVDIKD 128
>pdb|1SVK|A Chain A, Structure Of The K180p Mutant Of Gi Alpha Subunit Bound To
Alf4 And Gdp
pdb|1SVS|A Chain A, Structure Of The K180p Mutant Of Gi Alpha Subunit Bound To
Gppnhp
Length = 353
Score = 32.7 bits (73), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 20/95 (21%), Positives = 38/95 (40%), Gaps = 10/95 (10%)
Query: 41 VPTVGLNIGRIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVI----------DAA 90
VPT G+ + +D+GGQ R W +E A++F + +
Sbjct: 178 VPTTGIVETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDE 237
Query: 91 CPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDL 125
+R +S + + N+ +++ NK+DL
Sbjct: 238 EMNRMHESMKLFDSICNNKWFTDTSIILFLNKKDL 272
>pdb|2CLD|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
P21 In Complex With Gdp (2)
Length = 166
Score = 32.3 bits (72), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 21/83 (25%), Positives = 36/83 (43%), Gaps = 4/83 (4%)
Query: 58 LVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLL 117
L D GQ ++ ++Y + V FED E++ R +D P++
Sbjct: 53 LDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMV 112
Query: 118 ILANKQDLP----DAVSADELAR 136
++ NK DL ++ A +LAR
Sbjct: 113 LVGNKSDLAARTVESRQAQDLAR 135
>pdb|3KKO|A Chain A, Crystal Structure Of M-Ras P40dD41EL51R IN COMPLEX WITH GP
pdb|3KKO|B Chain B, Crystal Structure Of M-Ras P40dD41EL51R IN COMPLEX WITH GP
pdb|3KKO|P Chain P, Crystal Structure Of M-Ras P40dD41EL51R IN COMPLEX WITH GP
Length = 183
Score = 32.3 bits (72), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 17/64 (26%), Positives = 30/64 (46%)
Query: 62 DLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILAN 121
D GQ ++ E+Y + V + FE + +LR +D + P++++AN
Sbjct: 72 DTAGQEEFSAMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVAN 131
Query: 122 KQDL 125
K DL
Sbjct: 132 KVDL 135
>pdb|2HV8|A Chain A, Crystal Structure Of Gtp-Bound Rab11 In Complex With Fip3
pdb|2HV8|B Chain B, Crystal Structure Of Gtp-Bound Rab11 In Complex With Fip3
pdb|2HV8|C Chain C, Crystal Structure Of Gtp-Bound Rab11 In Complex With Fip3
Length = 172
Score = 32.3 bits (72), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 35/79 (44%), Gaps = 3/79 (3%)
Query: 57 KLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPL 116
K WD G R+I YY A + V D A +E+ + L K LR+ +
Sbjct: 58 KAQIWDTAGLERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWL-KELRDHADSNIVI 116
Query: 117 LILANKQDLPD--AVSADE 133
+++ NK DL AV DE
Sbjct: 117 MLVGNKSDLRHLRAVPTDE 135
>pdb|2CL0|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
P21 In Complex With Gppnhp
pdb|2CL6|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
P21 In Complex With S-Caged Gtp
pdb|2CL7|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
P21 In Complex With Gtp
pdb|2CLC|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
P21 In Complex With Gtp (2)
pdb|2EVW|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
P21 In Complex With R-Caged Gtp
pdb|2CE2|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
P21 In Complex With Gdp
Length = 166
Score = 32.3 bits (72), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 21/83 (25%), Positives = 36/83 (43%), Gaps = 4/83 (4%)
Query: 58 LVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLL 117
L D GQ ++ ++Y + V FED E++ R +D P++
Sbjct: 53 LDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMV 112
Query: 118 ILANKQDLP----DAVSADELAR 136
++ NK DL ++ A +LAR
Sbjct: 113 LVGNKSDLAARTVESRQAQDLAR 135
>pdb|2FN4|A Chain A, The Crystal Structure Of Human Ras-Related Protein, Rras,
In The Gdp- Bound State
Length = 181
Score = 32.3 bits (72), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 29/127 (22%), Positives = 51/127 (40%), Gaps = 7/127 (5%)
Query: 56 SKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAP 115
++L D GQ ++ E+Y H + V F + ++LR +D P
Sbjct: 57 ARLDILDTAGQEEFGAMREQYMRAGHGFLLVFAINDRQSFNEVGKLFTQILRVKDRDDFP 116
Query: 116 LLILANKQDLPD--AVSADELARYLDLKKLDERVCMFEAVSGYDGFGIKESVEWLVEVME 173
++++ NK DL V E + + V FEA S + E+ E LV +
Sbjct: 117 VVLVGNKADLESQRQVPRSEASAF----GASHHVAYFEA-SAKLRLNVDEAFEQLVRAVR 171
Query: 174 RSKRTEM 180
+ + E+
Sbjct: 172 KYQEQEL 178
>pdb|1X1R|A Chain A, Crystal Structure Of M-Ras In Complex With Gdp
pdb|1X1S|A Chain A, Crystal Structure Of M-ras In Complex With Gppnhp
Length = 178
Score = 32.3 bits (72), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 17/64 (26%), Positives = 30/64 (46%)
Query: 62 DLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILAN 121
D GQ ++ E+Y + V + FE + +LR +D + P++++AN
Sbjct: 67 DTAGQEEFSAMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVAN 126
Query: 122 KQDL 125
K DL
Sbjct: 127 KVDL 130
>pdb|3KKP|A Chain A, Crystal Structure Of M-Ras P40d In Complex With Gppnhp
pdb|3KKQ|A Chain A, Crystal Structure Of M-Ras P40d In Complex With Gdp
Length = 183
Score = 32.3 bits (72), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 17/64 (26%), Positives = 30/64 (46%)
Query: 62 DLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILAN 121
D GQ ++ E+Y + V + FE + +LR +D + P++++AN
Sbjct: 72 DTAGQEEFSAMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVAN 131
Query: 122 KQDL 125
K DL
Sbjct: 132 KVDL 135
>pdb|3PIR|A Chain A, Crystal Structure Of M-Rasd41e In Complex With Gppnhp
(Type 1)
pdb|3PIT|A Chain A, Crystal Structure Of M-Rasd41e In Complex With Gppnhp
(Type 2)
Length = 183
Score = 32.3 bits (72), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 17/64 (26%), Positives = 30/64 (46%)
Query: 62 DLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILAN 121
D GQ ++ E+Y + V + FE + +LR +D + P++++AN
Sbjct: 72 DTAGQEEFSAMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVAN 131
Query: 122 KQDL 125
K DL
Sbjct: 132 KVDL 135
>pdb|1OIW|A Chain A, X-ray Structure Of The Small G Protein Rab11a In Complex
With Gtpgammas
pdb|1OIX|A Chain A, X-Ray Structure Of The Small G Protein Rab11a In Complex
With Gdp And Pi
Length = 191
Score = 32.3 bits (72), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 35/79 (44%), Gaps = 3/79 (3%)
Query: 57 KLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPL 116
K WD G R+I YY A + V D A +E+ + L K LR+ +
Sbjct: 79 KAQIWDTAGLERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWL-KELRDHADSNIVI 137
Query: 117 LILANKQDLPD--AVSADE 133
+++ NK DL AV DE
Sbjct: 138 MLVGNKSDLRHLRAVPTDE 156
>pdb|1Z0K|A Chain A, Structure Of Gtp-Bound Rab4q67l Gtpase In Complex With The
Central Rab Binding Domain Of Rabenosyn-5
pdb|1Z0K|C Chain C, Structure Of Gtp-Bound Rab4q67l Gtpase In Complex With The
Central Rab Binding Domain Of Rabenosyn-5
Length = 172
Score = 32.3 bits (72), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 38/141 (26%), Positives = 57/141 (40%), Gaps = 16/141 (11%)
Query: 32 VEGLPPDRIVPTVGLNIGR--IEVSNS--KLVFWDLGGQPGLRSIWEKYYEEAHAVVFVI 87
+E D T+G+ G I V KL WD G RS+ YY A + V
Sbjct: 29 IEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGLERFRSVTRSYYRGAAGALLVY 88
Query: 88 DAACPSRFEDSKTALEKVLRNEDL---QGAPLLILANKQDLPDAVSADELARYLDLKKL- 143
D SR ++ AL L + + Q +++ NK+DL AD +L+ +
Sbjct: 89 D--ITSR--ETYNALTNWLTDARMLASQNIVIILCGNKKDLD----ADREVTFLEASRFA 140
Query: 144 DERVCMFEAVSGYDGFGIKES 164
E MF S G ++E+
Sbjct: 141 QENELMFLETSALTGEDVEEA 161
>pdb|2FG5|A Chain A, Crystal Structure Of Human Rab31 In Complex With A Gtp
Analogue
Length = 192
Score = 32.3 bits (72), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 27/93 (29%), Positives = 37/93 (39%), Gaps = 5/93 (5%)
Query: 39 RIVPTVGLNI--GRIEVSN--SKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSR 94
I PT+G + + N K + WD GQ S+ YY + A V V D
Sbjct: 51 NISPTIGASFMTKTVPCGNELHKFLIWDTAGQERFHSLAPMYYRGSAAAVIVYDITKQDS 110
Query: 95 FEDSKTALEKVLRNEDLQGAPLLILANKQDLPD 127
F K + K L+ + + I NK DL D
Sbjct: 111 FYTLKKWV-KELKEHGPENIVMAIAGNKCDLSD 142
>pdb|1BYU|A Chain A, Canine Gdp-Ran
pdb|1BYU|B Chain B, Canine Gdp-Ran
Length = 216
Score = 32.0 bits (71), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 19/93 (20%), Positives = 40/93 (43%), Gaps = 6/93 (6%)
Query: 39 RIVPTVGLNIGRIEVSNS----KLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSR 94
+ VPT+G+ + + + K WD GQ + + YY +A + + D
Sbjct: 38 KYVPTLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVT 97
Query: 95 FEDSKTALEKVLRNEDLQGAPLLILANKQDLPD 127
+++ ++R + P+++ NK D+ D
Sbjct: 98 YKNVPNWHRDLVRV--CENIPIVLCGNKVDIKD 128
>pdb|2O52|A Chain A, Crystal Structure Of Human Rab4b In Complex With Gdp
pdb|2O52|B Chain B, Crystal Structure Of Human Rab4b In Complex With Gdp
Length = 200
Score = 32.0 bits (71), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 34/131 (25%), Positives = 56/131 (42%), Gaps = 18/131 (13%)
Query: 43 TVGLNIGRIEVS----NSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDS 98
T+G+ G V+ KL WD GQ RS+ YY A + V D ++
Sbjct: 57 TIGVEFGSRVVNVGGKTVKLQIWDTAGQERFRSVTRSYYRGAAGALLVYDITS----RET 112
Query: 99 KTALEKVLRNEDLQGAP---LLILANKQDL-PD-AVSADELARYLDLKKLDERVCMFEAV 153
+L L + +P +++ NK+DL P+ V+ E +R+ +L MF
Sbjct: 113 YNSLAAWLTDARTLASPNIVVILCGNKKDLDPEREVTFLEASRFAQENEL-----MFLET 167
Query: 154 SGYDGFGIKES 164
S G ++E+
Sbjct: 168 SALTGENVEEA 178
>pdb|2ERY|A Chain A, The Crystal Structure Of The Ras Related Protein Rras2
(Rras2) In The Gdp Bound State
pdb|2ERY|B Chain B, The Crystal Structure Of The Ras Related Protein Rras2
(Rras2) In The Gdp Bound State
Length = 172
Score = 32.0 bits (71), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 18/75 (24%), Positives = 33/75 (44%)
Query: 51 IEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNED 110
I+ ++L D GQ ++ E+Y + V FE+ ++LR +D
Sbjct: 48 IDDRAARLDILDTAGQEEFGAMREQYMRTGEGFLLVFSVTDRGSFEEIYKFQRQILRVKD 107
Query: 111 LQGAPLLILANKQDL 125
P++++ NK DL
Sbjct: 108 RDEFPMILIGNKADL 122
>pdb|2C5L|A Chain A, Structure Of Plc Epsilon Ras Association Domain With Hras
pdb|2C5L|B Chain B, Structure Of Plc Epsilon Ras Association Domain With Hras
Length = 173
Score = 32.0 bits (71), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 21/83 (25%), Positives = 36/83 (43%), Gaps = 4/83 (4%)
Query: 58 LVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLL 117
L D GQ ++ ++Y + V FED E++ R +D P++
Sbjct: 60 LDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMV 119
Query: 118 ILANKQDLP----DAVSADELAR 136
++ NK DL ++ A +LAR
Sbjct: 120 LVGNKCDLAARTVESRQAQDLAR 142
>pdb|421P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants:
Molecular Basis For Their Inability To Function As
Signal Switch Molecules
Length = 166
Score = 31.6 bits (70), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 21/83 (25%), Positives = 36/83 (43%), Gaps = 4/83 (4%)
Query: 58 LVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLL 117
L D GQ ++ ++Y + V FED E++ R +D P++
Sbjct: 53 LDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMV 112
Query: 118 ILANKQDLP----DAVSADELAR 136
++ NK DL ++ A +LAR
Sbjct: 113 LVGNKCDLAARTVESRQAQDLAR 135
>pdb|3DDC|A Chain A, Crystal Structure Of Nore1a In Complex With Ras
Length = 166
Score = 31.6 bits (70), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 21/83 (25%), Positives = 36/83 (43%), Gaps = 4/83 (4%)
Query: 58 LVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLL 117
L D GQ ++ ++Y + V FED E++ R +D P++
Sbjct: 53 LDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMV 112
Query: 118 ILANKQDLP----DAVSADELAR 136
++ NK DL ++ A +LAR
Sbjct: 113 LVGNKCDLAARTVESRQAQDLAR 135
>pdb|221P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants:
Molecular Basis For Their Inability To Function As
Signal Switch Molecules
Length = 166
Score = 31.6 bits (70), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 21/83 (25%), Positives = 36/83 (43%), Gaps = 4/83 (4%)
Query: 58 LVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLL 117
L D GQ ++ ++Y + V FED E++ R +D P++
Sbjct: 53 LDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMV 112
Query: 118 ILANKQDLP----DAVSADELAR 136
++ NK DL ++ A +LAR
Sbjct: 113 LVGNKCDLAARTVESRQAQDLAR 135
>pdb|1LFD|B Chain B, Crystal Structure Of The Active Ras Protein Complexed With
The Ras-interacting Domain Of Ralgds
pdb|1LFD|D Chain D, Crystal Structure Of The Active Ras Protein Complexed With
The Ras-interacting Domain Of Ralgds
Length = 167
Score = 31.6 bits (70), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 21/83 (25%), Positives = 36/83 (43%), Gaps = 4/83 (4%)
Query: 58 LVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLL 117
L D GQ ++ ++Y + V FED E++ R +D P++
Sbjct: 53 LDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMV 112
Query: 118 ILANKQDLP----DAVSADELAR 136
++ NK DL ++ A +LAR
Sbjct: 113 LVGNKCDLAARTVESRQAQDLAR 135
>pdb|1JAH|A Chain A, H-Ras P21 Protein Mutant G12p, Complexed With
Guanosine-5'- [beta,Gamma-Methylene] Triphosphate And
Magnesium
pdb|1PLK|A Chain A, Crystallographic Studies On P21h-Ras Using Synchrotron
Laue Method: Improvement Of Crystal Quality And
Monitoring Of The Gtpase Reaction At Different Time
Points
Length = 166
Score = 31.6 bits (70), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 21/83 (25%), Positives = 36/83 (43%), Gaps = 4/83 (4%)
Query: 58 LVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLL 117
L D GQ ++ ++Y + V FED E++ R +D P++
Sbjct: 53 LDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMV 112
Query: 118 ILANKQDLP----DAVSADELAR 136
++ NK DL ++ A +LAR
Sbjct: 113 LVGNKCDLAGRTVESRQAQDLAR 135
>pdb|1AGP|A Chain A, Three-Dimensional Structures And Properties Of A
Transforming And A Nontransforming Gly-12 Mutant Of
P21-H-Ras
Length = 166
Score = 31.6 bits (70), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 21/83 (25%), Positives = 36/83 (43%), Gaps = 4/83 (4%)
Query: 58 LVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLL 117
L D GQ ++ ++Y + V FED E++ R +D P++
Sbjct: 53 LDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMV 112
Query: 118 ILANKQDLP----DAVSADELAR 136
++ NK DL ++ A +LAR
Sbjct: 113 LVGNKCDLAARTVESRQAQDLAR 135
>pdb|1CLU|A Chain A, H-Ras Complexed With Diaminobenzophenone-Beta,Gamma-Imido-
Gtp
pdb|1JAI|A Chain A, H-Ras P21 Protein Mutant G12p, Complexed With
Guanosine-5'- [beta,Gamma-Methylene] Triphosphate And
Manganese
pdb|1PLJ|A Chain A, Crystallographic Studies On P21h-Ras Using Synchrotron
Laue Method: Improvement Of Crystal Quality And
Monitoring Of The Gtpase Reaction At Different Time
Points
pdb|1PLL|A Chain A, Crystallographic Studies On P21h-Ras Using Synchrotron
Laue Method: Improvement Of Crystal Quality And
Monitoring Of The Gtpase Reaction At Different Time
Points
pdb|821P|A Chain A, Three-Dimensional Structures And Properties Of A
Transforming And A Nontransforming Glycine-12 Mutant Of
P21h-Ras
Length = 166
Score = 31.6 bits (70), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 21/83 (25%), Positives = 36/83 (43%), Gaps = 4/83 (4%)
Query: 58 LVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLL 117
L D GQ ++ ++Y + V FED E++ R +D P++
Sbjct: 53 LDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMV 112
Query: 118 ILANKQDLP----DAVSADELAR 136
++ NK DL ++ A +LAR
Sbjct: 113 LVGNKCDLAARTVESRQAQDLAR 135
>pdb|6Q21|A Chain A, Molecular Switch For Signal Transduction: Structural
Differences Between Active And Inactive Forms Of
Protooncogenic Ras Proteins
pdb|6Q21|B Chain B, Molecular Switch For Signal Transduction: Structural
Differences Between Active And Inactive Forms Of
Protooncogenic Ras Proteins
pdb|6Q21|C Chain C, Molecular Switch For Signal Transduction: Structural
Differences Between Active And Inactive Forms Of
Protooncogenic Ras Proteins
pdb|6Q21|D Chain D, Molecular Switch For Signal Transduction: Structural
Differences Between Active And Inactive Forms Of
Protooncogenic Ras Proteins
pdb|1IOZ|A Chain A, Crystal Structure Of The C-Ha-Ras Protein Prepared By The
Cell-Free Synthesis
pdb|1AA9|A Chain A, Human C-Ha-Ras(1-171)(Dot)gdp, Nmr, Minimized Average
Structure
pdb|1Q21|A Chain A, Crystal Structures At 2.2 Angstroms Resolution Of The
Catalytic Domains Of Normal Ras Protein And An Oncogenic
Mutant Complexed With Gsp
Length = 171
Score = 31.6 bits (70), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 21/83 (25%), Positives = 36/83 (43%), Gaps = 4/83 (4%)
Query: 58 LVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLL 117
L D GQ ++ ++Y + V FED E++ R +D P++
Sbjct: 53 LDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMV 112
Query: 118 ILANKQDLP----DAVSADELAR 136
++ NK DL ++ A +LAR
Sbjct: 113 LVGNKCDLAARTVESRQAQDLAR 135
>pdb|2Q21|A Chain A, Crystal Structures At 2.2 Angstroms Resolution Of The
Catalytic Domains Of Normal Ras Protein And An Oncogenic
Mutant Complexed With Gsp
Length = 171
Score = 31.6 bits (70), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 21/83 (25%), Positives = 36/83 (43%), Gaps = 4/83 (4%)
Query: 58 LVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLL 117
L D GQ ++ ++Y + V FED E++ R +D P++
Sbjct: 53 LDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMV 112
Query: 118 ILANKQDLP----DAVSADELAR 136
++ NK DL ++ A +LAR
Sbjct: 113 LVGNKCDLAARTVESRQAQDLAR 135
>pdb|3LO5|A Chain A, Crystal Structure Of The Dominant Negative S17n Mutant Of
Ras
pdb|3LO5|C Chain C, Crystal Structure Of The Dominant Negative S17n Mutant Of
Ras
pdb|3LO5|E Chain E, Crystal Structure Of The Dominant Negative S17n Mutant Of
Ras
Length = 166
Score = 31.6 bits (70), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 21/83 (25%), Positives = 36/83 (43%), Gaps = 4/83 (4%)
Query: 58 LVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLL 117
L D GQ ++ ++Y + V FED E++ R +D P++
Sbjct: 53 LDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMV 112
Query: 118 ILANKQDLP----DAVSADELAR 136
++ NK DL ++ A +LAR
Sbjct: 113 LVGNKCDLAARTVESRQAQDLAR 135
>pdb|2X1V|A Chain A, Crystal Structure Of The Activating H-Ras I163f Mutant In
Costello Syndrome, Bound To Mg-Gdp
Length = 166
Score = 31.6 bits (70), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 21/83 (25%), Positives = 36/83 (43%), Gaps = 4/83 (4%)
Query: 58 LVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLL 117
L D GQ ++ ++Y + V FED E++ R +D P++
Sbjct: 53 LDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMV 112
Query: 118 ILANKQDLP----DAVSADELAR 136
++ NK DL ++ A +LAR
Sbjct: 113 LVGNKCDLAARTVESRQAQDLAR 135
>pdb|1WQ1|R Chain R, Ras-Rasgap Complex
pdb|1BKD|R Chain R, Complex Of Human H-Ras With Human Sos-1
pdb|1CTQ|A Chain A, Structure Of P21ras In Complex With Gppnhp At 100 K
pdb|1QRA|A Chain A, Structure Of P21ras In Complex With Gtp At 100 K
pdb|1K8R|A Chain A, Crystal Structure Of Ras-Bry2rbd Complex
pdb|1NVV|R Chain R, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-specific Nucleotide Exchange Factor Sos
pdb|1NVW|Q Chain Q, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-specific Nucleotide Exchange Factor Sos
pdb|1NVW|R Chain R, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-specific Nucleotide Exchange Factor Sos
pdb|1P2S|A Chain A, H-Ras 166 In 50% 2,2,2 Triflouroethanol
pdb|1P2T|A Chain A, H-Ras 166 In Aqueous Mother Liqour, Rt
pdb|1P2U|A Chain A, H-Ras In 50% Isopropanol
pdb|1P2V|A Chain A, H-Ras 166 In 60 % 1,6 Hexanediol
pdb|1XD2|B Chain B, Crystal Structure Of A Ternary Ras:sos:ras*gdp Complex
pdb|121P|A Chain A, Struktur Und Guanosintriphosphat-Hydrolysemechanismus Des
C- Terminal Verkuerzten Menschlichen Krebsproteins
P21-H-Ras
pdb|1CRP|A Chain A, The Solution Structure And Dynamics Of Ras P21. Gdp
Determined By Heteronuclear Three And Four Dimensional
Nmr Spectroscopy
pdb|1CRQ|A Chain A, The Solution Structure And Dynamics Of Ras P21. Gdp
Determined By Heteronuclear Three And Four Dimensional
Nmr Spectroscopy
pdb|1CRR|A Chain A, The Solution Structure And Dynamics Of Ras P21. Gdp
Determined By Heteronuclear Three And Four Dimensional
Nmr Spectroscopy
pdb|1GNP|A Chain A, X-Ray Crystal Structure Analysis Of The Catalytic Domain
Of The Oncogene Product P21h-Ras Complexed With Caged
Gtp And Mant Dgppnhp
pdb|1GNQ|A Chain A, X-Ray Crystal Structure Analysis Of The Catalytic Domain
Of The Oncogene Product P21h-Ras Complexed With Caged
Gtp And Mant Dgppnhp
pdb|1GNR|A Chain A, X-Ray Crystal Structure Analysis Of The Catalytic Domain
Of The Oncogene Product P21h-Ras Complexed With Caged
Gtp And Mant Dgppnhp
pdb|5P21|A Chain A, Refined Crystal Structure Of The Triphosphate Conformation
Of H-Ras P21 At 1.35 Angstroms Resolution: Implications
For The Mechanism Of Gtp Hydrolysis
pdb|2RGE|A Chain A, Crystal Structure Of H-Ras-Gppnhp
pdb|3K8Y|A Chain A, Allosteric Modulation Of H-Ras Gtpase
pdb|3LBH|A Chain A, Ras Soaked In Calcium Acetate
pdb|3LBI|A Chain A, Ras Soaked In Magnesium Acetate And Back Soaked In Calcium
A
pdb|3LBN|A Chain A, Ras Soaked In Magnesium Acetate
pdb|3KUD|A Chain A, Complex Of Ras-Gdp With Rafrbd(A85k)
pdb|3L8Y|A Chain A, Complex Of Ras With Cyclen
pdb|3L8Z|A Chain A, H-Ras Wildtype New Crystal Form
pdb|3RRY|A Chain A, H-Ras Crosslinked Control, Soaked In Aqueous Solution: One
Of 10 In Mscs Set
pdb|3RRZ|A Chain A, H-Ras In 70% Glycerol: One Of 10 In Mscs Set
pdb|3RS0|A Chain A, H-Ras Soaked In Neat Cyclopentanol: One Of 10 In Mscs Set
pdb|3RS2|A Chain A, H-Ras Soaked In 50% 2,2,2-Trifluoroethanol: One Of 10 In
Mscs Set
pdb|3RS3|A Chain A, H-Ras Soaked In Neat Hexane: 1 Of 10 In Mscs Set
pdb|3RS4|A Chain A, H-Ras Soaked In 60% 1,6-Hexanediol: 1 Of 10 In Mscs Set
pdb|3RS5|A Chain A, H-Ras Soaked In 55% Dimethylformamide: 1 Of 10 In Mscs Set
pdb|3RS7|A Chain A, H-Ras Soaked In 50% Isopropanol: 1 Of 10 In Mscs Set
pdb|3RSL|A Chain A, H-Ras Soaked In 90% R,S,R-Bisfuranol: One Of 10 In Mscs
Set
pdb|3RSO|A Chain A, H-Ras Soaked In 20% S,R,S-Bisfuranol: 1 Of 10 In Mscs Set
pdb|3TGP|A Chain A, Room Temperature H-Ras
pdb|4DLS|A Chain A, H-Ras Set 1 Cacl2 'mixed'
pdb|4DLT|A Chain A, H-Ras Set 2 Ca(Oac)2, On
pdb|4DLU|A Chain A, H-Ras Set 1 Ca(Oac)2, On
pdb|4DLW|A Chain A, H-Ras Set 2 Ca(Oac)2DTT, ON
Length = 166
Score = 31.6 bits (70), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 21/83 (25%), Positives = 36/83 (43%), Gaps = 4/83 (4%)
Query: 58 LVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLL 117
L D GQ ++ ++Y + V FED E++ R +D P++
Sbjct: 53 LDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMV 112
Query: 118 ILANKQDLP----DAVSADELAR 136
++ NK DL ++ A +LAR
Sbjct: 113 LVGNKCDLAARTVESRQAQDLAR 135
>pdb|4EFM|A Chain A, Crystal Structure Of H-Ras G12v In Complex With Gppnhp
(State 1)
Length = 171
Score = 31.6 bits (70), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 21/83 (25%), Positives = 36/83 (43%), Gaps = 4/83 (4%)
Query: 58 LVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLL 117
L D GQ ++ ++Y + V FED E++ R +D P++
Sbjct: 58 LDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMV 117
Query: 118 ILANKQDLP----DAVSADELAR 136
++ NK DL ++ A +LAR
Sbjct: 118 LVGNKCDLAARTVESRQAQDLAR 140
>pdb|4EFL|A Chain A, Crystal Structure Of H-Ras Wt In Complex With Gppnhp
(State 1)
Length = 171
Score = 31.6 bits (70), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 21/83 (25%), Positives = 36/83 (43%), Gaps = 4/83 (4%)
Query: 58 LVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLL 117
L D GQ ++ ++Y + V FED E++ R +D P++
Sbjct: 58 LDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMV 117
Query: 118 ILANKQDLP----DAVSADELAR 136
++ NK DL ++ A +LAR
Sbjct: 118 LVGNKCDLAARTVESRQAQDLAR 140
>pdb|1IAQ|A Chain A, C-H-Ras P21 Protein Mutant With Thr 35 Replaced By Ser
(T35s) Complexed With Guanosine-5'-[b,G-Imido]
Triphosphate
pdb|1IAQ|B Chain B, C-H-Ras P21 Protein Mutant With Thr 35 Replaced By Ser
(T35s) Complexed With Guanosine-5'-[b,G-Imido]
Triphosphate
pdb|1IAQ|C Chain C, C-H-Ras P21 Protein Mutant With Thr 35 Replaced By Ser
(T35s) Complexed With Guanosine-5'-[b,G-Imido]
Triphosphate
Length = 166
Score = 31.6 bits (70), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 21/83 (25%), Positives = 36/83 (43%), Gaps = 4/83 (4%)
Query: 58 LVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLL 117
L D GQ ++ ++Y + V FED E++ R +D P++
Sbjct: 53 LDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMV 112
Query: 118 ILANKQDLP----DAVSADELAR 136
++ NK DL ++ A +LAR
Sbjct: 113 LVGNKCDLAARTVESRQAQDLAR 135
>pdb|1RVD|A Chain A, H-Ras Complexed With Diaminobenzophenone-Beta,Gamma-Imido-
Gtp
pdb|1HE8|B Chain B, Ras G12v-Pi 3-Kinase Gamma Complex
pdb|2UZI|R Chain R, Crystal Structure Of Hras(G12v) - Anti-Ras Fv Complex
pdb|2VH5|R Chain R, Crystal Structure Of Hras(G12v) - Anti-Ras Fv (Disulfide
Free Mutant) Complex
pdb|3OIV|A Chain A, H-Rasg12v With Allosteric Switch In The "off" State
pdb|3OIW|A Chain A, H-Rasg12v With Allosteric Switch In The "on" State
Length = 166
Score = 31.6 bits (70), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 21/83 (25%), Positives = 36/83 (43%), Gaps = 4/83 (4%)
Query: 58 LVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLL 117
L D GQ ++ ++Y + V FED E++ R +D P++
Sbjct: 53 LDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMV 112
Query: 118 ILANKQDLP----DAVSADELAR 136
++ NK DL ++ A +LAR
Sbjct: 113 LVGNKCDLAARTVESRQAQDLAR 135
>pdb|3K9N|A Chain A, Allosteric Modulation Of H-Ras Gtpase
pdb|3K9L|A Chain A, Allosteric Modulation Of H-Ras Gtpase
pdb|3K9L|B Chain B, Allosteric Modulation Of H-Ras Gtpase
pdb|3K9L|C Chain C, Allosteric Modulation Of H-Ras Gtpase
Length = 166
Score = 31.6 bits (70), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 21/83 (25%), Positives = 36/83 (43%), Gaps = 4/83 (4%)
Query: 58 LVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLL 117
L D GQ ++ ++Y + V FED E++ R +D P++
Sbjct: 53 LDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMV 112
Query: 118 ILANKQDLP----DAVSADELAR 136
++ NK DL ++ A +LAR
Sbjct: 113 LVGNKCDLAARTVESRQAQDLAR 135
>pdb|3KKM|A Chain A, Crystal Structure Of H-Ras T35s In Complex With Gppnhp
pdb|3KKN|A Chain A, Crystal Structure Of H-Ras T35s In Complex With Gppnhp
pdb|2LCF|A Chain A, Solution Structure Of Gppnhp-Bound H-Rast35s Mutant
Protein
Length = 172
Score = 31.6 bits (70), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 21/83 (25%), Positives = 36/83 (43%), Gaps = 4/83 (4%)
Query: 58 LVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLL 117
L D GQ ++ ++Y + V FED E++ R +D P++
Sbjct: 59 LDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMV 118
Query: 118 ILANKQDLP----DAVSADELAR 136
++ NK DL ++ A +LAR
Sbjct: 119 LVGNKCDLAARTVESRQAQDLAR 141
>pdb|3I3S|R Chain R, Crystal Structure Of H-Ras With Thr50 Replaced By
Isoleucine
Length = 166
Score = 31.6 bits (70), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 21/83 (25%), Positives = 36/83 (43%), Gaps = 4/83 (4%)
Query: 58 LVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLL 117
L D GQ ++ ++Y + V FED E++ R +D P++
Sbjct: 53 LDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMV 112
Query: 118 ILANKQDLP----DAVSADELAR 136
++ NK DL ++ A +LAR
Sbjct: 113 LVGNKCDLAARTVESRQAQDLAR 135
>pdb|4Q21|A Chain A, Molecular Switch For Signal Transduction: Structural
Differences Between Active And Inactive Forms Of
Protooncogenic Ras Proteins
Length = 189
Score = 31.2 bits (69), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 21/83 (25%), Positives = 36/83 (43%), Gaps = 4/83 (4%)
Query: 58 LVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLL 117
L D GQ ++ ++Y + V FED E++ R +D P++
Sbjct: 53 LDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMV 112
Query: 118 ILANKQDLP----DAVSADELAR 136
++ NK DL ++ A +LAR
Sbjct: 113 LVGNKCDLAARTVESRQAQDLAR 135
>pdb|3DZ8|A Chain A, Crystal Structure Of Human Rab3b Gtpase Bound With Gdp
Length = 191
Score = 31.2 bits (69), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 22/92 (23%), Positives = 37/92 (40%), Gaps = 5/92 (5%)
Query: 40 IVPTVGLNIGRIEVSNS----KLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRF 95
V TVG++ V KL WD GQ R+I YY A + + D F
Sbjct: 52 FVSTVGIDFKVKTVYRHEKRVKLQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEESF 111
Query: 96 EDSKTALEKVLRNEDLQGAPLLILANKQDLPD 127
+ ++ + A ++++ NK D+ +
Sbjct: 112 NAVQDWATQI-KTYSWDNAQVILVGNKCDMEE 142
>pdb|1NVV|Q Chain Q, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-specific Nucleotide Exchange Factor Sos
pdb|1XD2|A Chain A, Crystal Structure Of A Ternary Ras:sos:ras*gdp Complex
Length = 166
Score = 31.2 bits (69), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 21/83 (25%), Positives = 36/83 (43%), Gaps = 4/83 (4%)
Query: 58 LVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLL 117
L D GQ ++ ++Y + V FED E++ R +D P++
Sbjct: 53 LDILDTAGQEEASAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMV 112
Query: 118 ILANKQDLP----DAVSADELAR 136
++ NK DL ++ A +LAR
Sbjct: 113 LVGNKCDLAARTVESRQAQDLAR 135
>pdb|2D7C|A Chain A, Crystal Structure Of Human Rab11 In Complex With Fip3 Rab-
Binding Domain
pdb|2D7C|B Chain B, Crystal Structure Of Human Rab11 In Complex With Fip3 Rab-
Binding Domain
Length = 167
Score = 31.2 bits (69), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 34/79 (43%), Gaps = 3/79 (3%)
Query: 57 KLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPL 116
K WD G R+I YY A + V D A +E+ + L K LR+ +
Sbjct: 55 KAQIWDTAGLERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWL-KELRDHADSNIVI 113
Query: 117 LILANKQDLPD--AVSADE 133
++ NK DL AV DE
Sbjct: 114 XLVGNKSDLRHLRAVPTDE 132
>pdb|3V4F|A Chain A, H-Ras Peg 400CACL2, ORDERED OFF
pdb|4DLR|A Chain A, H-Ras Peg 400CA(OAC)2, ORDERED OFF
pdb|4DLV|A Chain A, H-Ras Set 2 Cacl2DTT, ORDERED OFF
pdb|4DLX|A Chain A, H-Ras Set 1 Cacl2DTE, ORDERED OFF
pdb|4DLY|A Chain A, Set 1 Cacl2DTT, ORDERED OFF
pdb|4DLZ|A Chain A, H-Ras Set 2 Ca(Oac)2DTE, ORDERED OFF
Length = 166
Score = 31.2 bits (69), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 21/83 (25%), Positives = 36/83 (43%), Gaps = 4/83 (4%)
Query: 58 LVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLL 117
L D GQ ++ ++Y + V FED E++ R +D P++
Sbjct: 53 LDILDTAGQEEYSAMRDEYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMV 112
Query: 118 ILANKQDLP----DAVSADELAR 136
++ NK DL ++ A +LAR
Sbjct: 113 LVGNKCDLAARTVESRQAQDLAR 135
>pdb|2GZD|A Chain A, Crystal Structure Of Rab11 In Complex With Rab11-Fip2
pdb|2GZD|B Chain B, Crystal Structure Of Rab11 In Complex With Rab11-Fip2
pdb|2GZH|A Chain A, Crystal Structure Of Rab11 In Complex With Rab11-Family
Interacting Protein 2
Length = 173
Score = 31.2 bits (69), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 34/79 (43%), Gaps = 3/79 (3%)
Query: 57 KLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPL 116
K WD G R+I YY A + V D A +E+ + L K LR+ +
Sbjct: 61 KAQIWDTAGLERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWL-KELRDHADSNIVI 119
Query: 117 LILANKQDLPD--AVSADE 133
++ NK DL AV DE
Sbjct: 120 XLVGNKSDLRHLRAVPTDE 138
>pdb|1K87|A Chain A, Crystal Structure Of E.coli Puta (residues 1-669)
Length = 669
Score = 31.2 bits (69), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 42/84 (50%), Gaps = 15/84 (17%)
Query: 116 LLILANKQDLP---DAVSADELARYLDLKKLDERVCMFEAVSGYDGFGI---------KE 163
L +LA + D+ DA AD L LDL E++C ++G++G G
Sbjct: 356 LTLLARQYDIGINIDAEEADRLEISLDLL---EKLCFEPELAGWNGIGFVIQAYQKRCPL 412
Query: 164 SVEWLVEVMERSKRTEMLRARAGA 187
+++L+++ RS+R M+R GA
Sbjct: 413 VIDYLIDLATRSRRRLMIRLVKGA 436
>pdb|521P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants:
Molecular Basis For Their Inability To Function As
Signal Switch Molecules
Length = 166
Score = 30.8 bits (68), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 21/83 (25%), Positives = 36/83 (43%), Gaps = 4/83 (4%)
Query: 58 LVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLL 117
L D GQ ++ ++Y + V FED E++ R +D P++
Sbjct: 53 LDILDTTGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMV 112
Query: 118 ILANKQDLP----DAVSADELAR 136
++ NK DL ++ A +LAR
Sbjct: 113 LVGNKCDLAARTVESRQAQDLAR 135
>pdb|1XZP|A Chain A, Structure Of The Gtp-Binding Protein Trme From Thermotoga
Maritima
pdb|1XZQ|A Chain A, Structure Of The Gtp-binding Protein Trme From Thermotoga
Maritima Complexed With 5-formyl-thf
Length = 482
Score = 30.8 bits (68), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 38/163 (23%), Positives = 70/163 (42%), Gaps = 34/163 (20%)
Query: 16 TEFHTLLEKLKSVYSNVEGLPPD-------------RIVPTVGLNIGRIEVSNSKLVFWD 62
T + LL + +++ +++ G D RIV T G+ S + +
Sbjct: 258 TLLNRLLNEDRAIVTDIPGTTRDVISEEIVIRGILFRIVDTAGVR------SETNDLVER 311
Query: 63 LGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANK 122
LG + L+ I E+A V+FV+DA+ P ED K E ++ L++ NK
Sbjct: 312 LGIERTLQEI-----EKADIVLFVLDASSPLDEEDRKIL-------ERIKNKRYLVVINK 359
Query: 123 QDLPDAVSADELARYLDLKKLDERVCMFEAVSGYDGFGIKESV 165
D+ + ++ +E+ L D + A+ G ++ES+
Sbjct: 360 VDVVEKINEEEIKNKLG---TDRHMVKISALKGEGLEKLEESI 399
>pdb|2QUZ|A Chain A, Crystal Structure Of The Activating H-Rask117r Mutant In
Costello Syndrome, Bound To Mg-Gdp
Length = 166
Score = 30.4 bits (67), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 20/83 (24%), Positives = 36/83 (43%), Gaps = 4/83 (4%)
Query: 58 LVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLL 117
L D GQ ++ ++Y + V FED E++ R +D P++
Sbjct: 53 LDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMV 112
Query: 118 ILANKQDLP----DAVSADELAR 136
++ N+ DL ++ A +LAR
Sbjct: 113 LVGNRCDLAARTVESRQAQDLAR 135
>pdb|1FQJ|A Chain A, Crystal Structure Of The Heterotrimeric Complex Of The Rgs
Domain Of Rgs9, The Gamma Subunit Of Phosphodiesterase
And The GtI1 CHIMERA ALPHA SUBUNIT [(RGS9)-(Pdegamma)-
(GtI1ALPHA)-(Gdp)-(Alf4-)-(Mg2+)]
pdb|1FQJ|D Chain D, Crystal Structure Of The Heterotrimeric Complex Of The Rgs
Domain Of Rgs9, The Gamma Subunit Of Phosphodiesterase
And The GtI1 CHIMERA ALPHA SUBUNIT [(RGS9)-(Pdegamma)-
(GtI1ALPHA)-(Gdp)-(Alf4-)-(Mg2+)]
pdb|1FQK|A Chain A, Crystal Structure Of The Heterodimeric Complex Of The Rgs
Domain Of Rgs9, And The GtI1 CHIMERA ALPHA SUBUNIT
[(Rgs9)-(GtI1ALPHA)-(Gdp)-(Alf4-)-(Mg2+)]
pdb|1FQK|C Chain C, Crystal Structure Of The Heterodimeric Complex Of The Rgs
Domain Of Rgs9, And The GtI1 CHIMERA ALPHA SUBUNIT
[(Rgs9)-(GtI1ALPHA)-(Gdp)-(Alf4-)-(Mg2+)]
Length = 325
Score = 30.4 bits (67), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 19/95 (20%), Positives = 38/95 (40%), Gaps = 10/95 (10%)
Query: 41 VPTVGLNIGRIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVI----------DAA 90
V T G+ + + +D+GGQ R W +E A++F + +
Sbjct: 150 VKTTGIIETQFSFKDLNFRMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDE 209
Query: 91 CPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDL 125
+R +S + + N+ +++ NK+DL
Sbjct: 210 EMNRMHESMKLFDSICNNKWFTDTSIILFLNKKDL 244
>pdb|3CLV|A Chain A, Crystal Structure Of Rab5a From Plasmodium Falciparum,
Pfb0500c
Length = 208
Score = 30.0 bits (66), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 30/120 (25%), Positives = 48/120 (40%), Gaps = 9/120 (7%)
Query: 52 EVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDL 111
+ N K WD GQ SI YY A + V D + + + +KT + ++ + +
Sbjct: 89 NLCNIKFDIWDTAGQERYASIVPLYYRGATCAIVVFDISNSNTLDRAKTWVNQLKISSNY 148
Query: 112 QGAPLLILANKQDLPD-AVSADELARYLDLKKLDERVCMFEAVSGYDGFGIKESVEWLVE 170
++++ANK D V E+ +Y L +F S G IK L E
Sbjct: 149 ---IIILVANKIDKNKFQVDILEVQKYAQDNNL-----LFIQTSAKTGTNIKNIFYMLAE 200
>pdb|1XCM|A Chain A, Crystal Structure Of The Gppnhp-Bound H-Ras G60a Mutant
Length = 167
Score = 30.0 bits (66), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 20/83 (24%), Positives = 35/83 (42%), Gaps = 4/83 (4%)
Query: 58 LVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLL 117
L D Q ++ ++Y + V FED E++ R +D P++
Sbjct: 53 LDILDTAAQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMV 112
Query: 118 ILANKQDLP----DAVSADELAR 136
++ NK DL ++ A +LAR
Sbjct: 113 LVGNKXDLAARTVESRQAQDLAR 135
>pdb|3E2Q|A Chain A, Crystal Structure Reduced Puta86-630 Mutant Y540s
Complexed With Trans-4-Hydroxy-L-Proline
pdb|3E2R|A Chain A, Crystal Structure Puta86-630 Mutant Y540s Complexed With
L-Tetrahydro- 2-Furoic Acid
pdb|3E2S|A Chain A, Crystal Structure Reduced Puta86-630 Mutant Y540s
Complexed With L- Proline
Length = 551
Score = 30.0 bits (66), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 42/84 (50%), Gaps = 15/84 (17%)
Query: 116 LLILANKQDLP---DAVSADELARYLDLKKLDERVCMFEAVSGYDGFGIKES-------- 164
L +LA + D+ DA +D L LDL E++C ++G++G G
Sbjct: 271 LTLLARQYDIGINIDAEESDRLEISLDLL---EKLCFEPELAGWNGIGFVIQAYQKRCPL 327
Query: 165 -VEWLVEVMERSKRTEMLRARAGA 187
+++L+++ RS+R M+R GA
Sbjct: 328 VIDYLIDLATRSRRRLMIRLVKGA 351
>pdb|1WA5|A Chain A, Crystal Structure Of The Exportin Cse1p Complexed With Its
Cargo (Kap60p) And Rangtp
Length = 176
Score = 30.0 bits (66), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 15/71 (21%), Positives = 30/71 (42%), Gaps = 2/71 (2%)
Query: 57 KLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPL 116
K WD GQ + + YY +A + + D +++ ++R + P+
Sbjct: 60 KFNVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVR--VCENIPI 117
Query: 117 LILANKQDLPD 127
++ NK D+ D
Sbjct: 118 VLCGNKVDIKD 128
>pdb|1XJ0|A Chain A, Crystal Structure Of The Gdp-Bound Form Of The Rasg60a
Mutant
Length = 166
Score = 30.0 bits (66), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 20/83 (24%), Positives = 35/83 (42%), Gaps = 4/83 (4%)
Query: 58 LVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLL 117
L D Q ++ ++Y + V FED E++ R +D P++
Sbjct: 53 LDILDTAAQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMV 112
Query: 118 ILANKQDLP----DAVSADELAR 136
++ NK DL ++ A +LAR
Sbjct: 113 LVGNKXDLAARTVESRQAQDLAR 135
>pdb|2V55|B Chain B, Mechanism Of Multi-site Phosphorylation From A Rock-i:rhoe
Complex Structure
pdb|2V55|D Chain D, Mechanism Of Multi-site Phosphorylation From A Rock-i:rhoe
Complex Structure
Length = 200
Score = 30.0 bits (66), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 27/104 (25%), Positives = 41/104 (39%), Gaps = 16/104 (15%)
Query: 37 PDRIVPTVGLNIG---RIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPS 93
P+ VPTV N I+ +L WD G P ++ Y ++ AV+ D + P
Sbjct: 49 PENYVPTVFENYTASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVLICFDISRPE 108
Query: 94 RFEDSKTALEKVLR------NEDLQGAPLLILANKQDLPDAVSA 131
L+ VL+ E +L++ K DL VS
Sbjct: 109 -------TLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRTDVST 145
>pdb|1TJ2|A Chain A, Crystal Structure Of E. Coli Puta Proline Dehydrogenase
Domain (Residues 86-669) Complexed With Acetate
Length = 584
Score = 30.0 bits (66), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 21/81 (25%), Positives = 40/81 (49%), Gaps = 9/81 (11%)
Query: 116 LLILANKQDLPDAVSADELARYLDLKKLDERVCMFEAVSGYDGFGI---------KESVE 166
L +LA + D+ + A+E R L E++C ++G++G G ++
Sbjct: 271 LTLLARQYDIGINIDAEESDRLEISLDLLEKLCFEPELAGWNGIGFVIQAYQKRCPLVID 330
Query: 167 WLVEVMERSKRTEMLRARAGA 187
+L+++ RS+R M+R GA
Sbjct: 331 YLIDLATRSRRRLMIRLVKGA 351
>pdb|1TIW|A Chain A, Crystal Structure Of E. Coli Puta Proline Dehydrogenase
Domain (Residues 86-669) Complexed With
L-Tetrahydro-2-Furoic Acid
pdb|1TJ0|A Chain A, Crystal Structure Of E. Coli Puta Proline Dehydrogenase
Domain (Residues 86-669) Co-Crystallized With L-Lactate
pdb|1TJ1|A Chain A, Crystal Structure Of E. Coli Puta Proline Dehydrogenase
Domain (Residues 86-669) Complexed With L-Lactate
pdb|2FZN|A Chain A, Structure Of The E. Coli Puta Proline Dehydrogenase Domain
Reduced By Dithionite And Complexed With Proline
pdb|2FZM|A Chain A, Structure Of The E. Coli Puta Proline Dehydrogenase Domain
Reduced By Dithionite And Complexed With So2
Length = 602
Score = 29.6 bits (65), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 21/81 (25%), Positives = 40/81 (49%), Gaps = 9/81 (11%)
Query: 116 LLILANKQDLPDAVSADELARYLDLKKLDERVCMFEAVSGYDGFGI---------KESVE 166
L +LA + D+ + A+E R L E++C ++G++G G ++
Sbjct: 271 LTLLARQYDIGINIDAEESDRLEISLDLLEKLCFEPELAGWNGIGFVIQAYQKRCPLVID 330
Query: 167 WLVEVMERSKRTEMLRARAGA 187
+L+++ RS+R M+R GA
Sbjct: 331 YLIDLATRSRRRLMIRLVKGA 351
>pdb|3ITG|A Chain A, Structure The Proline Utilization A Proline Dehydrogenase
Domain (Puta86-630) Inactivated With N-Propargylglycine
pdb|3ITG|B Chain B, Structure The Proline Utilization A Proline Dehydrogenase
Domain (Puta86-630) Inactivated With N-Propargylglycine
Length = 602
Score = 29.6 bits (65), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 42/84 (50%), Gaps = 15/84 (17%)
Query: 116 LLILANKQDLP---DAVSADELARYLDLKKLDERVCMFEAVSGYDGFGI---------KE 163
L +LA + D+ DA +D L LDL E++C ++G++G G
Sbjct: 271 LTLLARQYDIGINIDAEESDRLEISLDLL---EKLCFEPELAGWNGIGFVIQAYQKRCPL 327
Query: 164 SVEWLVEVMERSKRTEMLRARAGA 187
+++L+++ RS+R M+R GA
Sbjct: 328 VIDYLIDLATRSRRRLMIRLVKGA 351
>pdb|1ZC3|A Chain A, Crystal Structure Of The Ral-Binding Domain Of Exo84 In
Complex With The Active Rala
pdb|1ZC3|C Chain C, Crystal Structure Of The Ral-Binding Domain Of Exo84 In
Complex With The Active Rala
pdb|1ZC4|A Chain A, Crystal Structure Of The Ral-binding Domain Of Exo84 In
Complex With The Active Rala
pdb|1ZC4|C Chain C, Crystal Structure Of The Ral-binding Domain Of Exo84 In
Complex With The Active Rala
Length = 175
Score = 29.6 bits (65), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 16/66 (24%), Positives = 28/66 (42%)
Query: 62 DLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILAN 121
D G +I + Y+ + V F + E++LR ++ + P L++ N
Sbjct: 60 DTAGLEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGN 119
Query: 122 KQDLPD 127
K DL D
Sbjct: 120 KSDLED 125
>pdb|2RGB|A Chain A, Crystal Structure Of H-Rasq61k-Gppnhp
Length = 166
Score = 29.6 bits (65), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 20/83 (24%), Positives = 36/83 (43%), Gaps = 4/83 (4%)
Query: 58 LVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLL 117
L D G+ ++ ++Y + V FED E++ R +D P++
Sbjct: 53 LDILDTAGKEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMV 112
Query: 118 ILANKQDLP----DAVSADELAR 136
++ NK DL ++ A +LAR
Sbjct: 113 LVGNKCDLAARTVESRQAQDLAR 135
>pdb|2GTP|A Chain A, Crystal Structure Of The Heterodimeric Complex Of Human
Rgs1 And Activated Gi Alpha 1
pdb|2GTP|B Chain B, Crystal Structure Of The Heterodimeric Complex Of Human
Rgs1 And Activated Gi Alpha 1
Length = 323
Score = 29.6 bits (65), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 19/95 (20%), Positives = 37/95 (38%), Gaps = 10/95 (10%)
Query: 41 VPTVGLNIGRIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVI----------DAA 90
V T G+ + +D+GGQ R W +E A++F + +
Sbjct: 148 VKTTGIVETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDE 207
Query: 91 CPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDL 125
+R +S + + N+ +++ NK+DL
Sbjct: 208 EMNRMHESMKLFDSICNNKWFTDTSIILFLNKKDL 242
>pdb|4G5Q|A Chain A, Structure Of Lgn Gl4GALPHAI1 COMPLEX
pdb|4G5Q|B Chain B, Structure Of Lgn Gl4GALPHAI1 COMPLEX
pdb|4G5Q|C Chain C, Structure Of Lgn Gl4GALPHAI1 COMPLEX
pdb|4G5Q|D Chain D, Structure Of Lgn Gl4GALPHAI1 COMPLEX
Length = 330
Score = 29.6 bits (65), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 19/95 (20%), Positives = 37/95 (38%), Gaps = 10/95 (10%)
Query: 41 VPTVGLNIGRIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVI----------DAA 90
V T G+ + +D+GGQ R W +E A++F + +
Sbjct: 155 VKTTGIVETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDE 214
Query: 91 CPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDL 125
+R +S + + N+ +++ NK+DL
Sbjct: 215 EMNRMHESMKLFDSICNNKWFTDTSIILFLNKKDL 249
>pdb|1BH2|A Chain A, A326s Mutant Of An Inhibitory Alpha Subunit
Length = 315
Score = 29.6 bits (65), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 19/95 (20%), Positives = 37/95 (38%), Gaps = 10/95 (10%)
Query: 41 VPTVGLNIGRIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVI----------DAA 90
V T G+ + +D+GGQ R W +E A++F + +
Sbjct: 148 VKTTGIVETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDE 207
Query: 91 CPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDL 125
+R +S + + N+ +++ NK+DL
Sbjct: 208 EMNRMHESMKLFDSICNNKWFTDTSIILFLNKKDL 242
>pdb|2IK8|A Chain A, Crystal Structure Of The Heterodimeric Complex Of Human
Rgs16 And Activated Gi Alpha 1
pdb|2IK8|C Chain C, Crystal Structure Of The Heterodimeric Complex Of Human
Rgs16 And Activated Gi Alpha 1
Length = 324
Score = 29.6 bits (65), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 19/95 (20%), Positives = 37/95 (38%), Gaps = 10/95 (10%)
Query: 41 VPTVGLNIGRIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVI----------DAA 90
V T G+ + +D+GGQ R W +E A++F + +
Sbjct: 149 VKTTGIVETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDE 208
Query: 91 CPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDL 125
+R +S + + N+ +++ NK+DL
Sbjct: 209 EMNRMHESMKLFDSICNNKWFTDTSIILFLNKKDL 243
>pdb|2G83|A Chain A, Structure Of Activated G-alpha-i1 Bound To A Nucleotide-
State-selective Peptide: Minimal Determinants For
Recognizing The Active Form Of A G Protein Alpha Subunit
pdb|2G83|B Chain B, Structure Of Activated G-alpha-i1 Bound To A Nucleotide-
State-selective Peptide: Minimal Determinants For
Recognizing The Active Form Of A G Protein Alpha Subunit
Length = 313
Score = 29.6 bits (65), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 19/95 (20%), Positives = 37/95 (38%), Gaps = 10/95 (10%)
Query: 41 VPTVGLNIGRIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVI----------DAA 90
V T G+ + +D+GGQ R W +E A++F + +
Sbjct: 147 VKTTGIVETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDE 206
Query: 91 CPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDL 125
+R +S + + N+ +++ NK+DL
Sbjct: 207 EMNRMHESMKLFDSICNNKWFTDTSIILFLNKKDL 241
>pdb|1KJY|A Chain A, Crystal Structure Of Human G[alpha]i1 Bound To The Goloco
Motif Of Rgs14
pdb|1KJY|C Chain C, Crystal Structure Of Human G[alpha]i1 Bound To The Goloco
Motif Of Rgs14
pdb|2OM2|A Chain A, Crystal Structure Of Human G[alpha]i1 Bound To The Goloco
Motif Of Rgs14
pdb|2OM2|C Chain C, Crystal Structure Of Human G[alpha]i1 Bound To The Goloco
Motif Of Rgs14
Length = 325
Score = 29.6 bits (65), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 19/95 (20%), Positives = 37/95 (38%), Gaps = 10/95 (10%)
Query: 41 VPTVGLNIGRIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVI----------DAA 90
V T G+ + +D+GGQ R W +E A++F + +
Sbjct: 150 VKTTGIVETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDE 209
Query: 91 CPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDL 125
+R +S + + N+ +++ NK+DL
Sbjct: 210 EMNRMHESMKLFDSICNNKWFTDTSIILFLNKKDL 244
>pdb|621P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants:
Molecular Basis For Their Inability To Function As
Signal Switch Molecules
Length = 166
Score = 29.6 bits (65), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 20/83 (24%), Positives = 35/83 (42%), Gaps = 4/83 (4%)
Query: 58 LVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLL 117
L D G ++ ++Y + V FED E++ R +D P++
Sbjct: 53 LDILDTAGHEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMV 112
Query: 118 ILANKQDLP----DAVSADELAR 136
++ NK DL ++ A +LAR
Sbjct: 113 LVGNKCDLAARTVESRQAQDLAR 135
>pdb|3QE0|A Chain A, A Galpha-I1 P-Loop Mutation Prevents Transition To The
Activated State
pdb|3QE0|B Chain B, A Galpha-I1 P-Loop Mutation Prevents Transition To The
Activated State
pdb|3QE0|C Chain C, A Galpha-I1 P-Loop Mutation Prevents Transition To The
Activated State
Length = 325
Score = 29.6 bits (65), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 19/95 (20%), Positives = 37/95 (38%), Gaps = 10/95 (10%)
Query: 41 VPTVGLNIGRIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVI----------DAA 90
V T G+ + +D+GGQ R W +E A++F + +
Sbjct: 150 VKTTGIVETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDE 209
Query: 91 CPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDL 125
+R +S + + N+ +++ NK+DL
Sbjct: 210 EMNRMHESMKLFDSICNNKWFTDTSIILFLNKKDL 244
>pdb|1M7B|A Chain A, Crystal Structure Of Rnd3RHOE: FUNCTIONAL IMPLICATIONS
Length = 184
Score = 29.6 bits (65), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 27/104 (25%), Positives = 41/104 (39%), Gaps = 16/104 (15%)
Query: 37 PDRIVPTVGLNIG---RIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPS 93
P+ VPTV N I+ +L WD G P ++ Y ++ AV+ D + P
Sbjct: 33 PENYVPTVFENYTASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVLICFDISRPE 92
Query: 94 RFEDSKTALEKVLR------NEDLQGAPLLILANKQDLPDAVSA 131
L+ VL+ E +L++ K DL VS
Sbjct: 93 -------TLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRTDVST 129
>pdb|3QI2|A Chain A, A Galpha P-Loop Mutation Prevents Transition To The
Activated State: G42r Bound To Rgs14 Goloco
pdb|3QI2|B Chain B, A Galpha P-Loop Mutation Prevents Transition To The
Activated State: G42r Bound To Rgs14 Goloco
Length = 328
Score = 29.6 bits (65), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 19/95 (20%), Positives = 37/95 (38%), Gaps = 10/95 (10%)
Query: 41 VPTVGLNIGRIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVI----------DAA 90
V T G+ + +D+GGQ R W +E A++F + +
Sbjct: 153 VKTTGIVETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDE 212
Query: 91 CPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDL 125
+R +S + + N+ +++ NK+DL
Sbjct: 213 EMNRMHESMKLFDSICNNKWFTDTSIILFLNKKDL 247
>pdb|2XNS|A Chain A, Crystal Structure Of Human G Alpha I1 Bound To A Designed
Helical Peptide Derived From The Goloco Motif Of Rgs14
pdb|2XNS|B Chain B, Crystal Structure Of Human G Alpha I1 Bound To A Designed
Helical Peptide Derived From The Goloco Motif Of Rgs14
Length = 327
Score = 29.6 bits (65), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 19/95 (20%), Positives = 37/95 (38%), Gaps = 10/95 (10%)
Query: 41 VPTVGLNIGRIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVI----------DAA 90
V T G+ + +D+GGQ R W +E A++F + +
Sbjct: 152 VKTTGIVETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDE 211
Query: 91 CPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDL 125
+R +S + + N+ +++ NK+DL
Sbjct: 212 EMNRMHESMKLFDSICNNKWFTDTSIILFLNKKDL 246
>pdb|1Y3A|A Chain A, Structure Of G-Alpha-I1 Bound To A Gdp-Selective Peptide
Provides Insight Into Guanine Nucleotide Exchange
pdb|1Y3A|B Chain B, Structure Of G-Alpha-I1 Bound To A Gdp-Selective Peptide
Provides Insight Into Guanine Nucleotide Exchange
pdb|1Y3A|C Chain C, Structure Of G-Alpha-I1 Bound To A Gdp-Selective Peptide
Provides Insight Into Guanine Nucleotide Exchange
pdb|1Y3A|D Chain D, Structure Of G-Alpha-I1 Bound To A Gdp-Selective Peptide
Provides Insight Into Guanine Nucleotide Exchange
Length = 329
Score = 29.6 bits (65), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 19/95 (20%), Positives = 37/95 (38%), Gaps = 10/95 (10%)
Query: 41 VPTVGLNIGRIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVI----------DAA 90
V T G+ + +D+GGQ R W +E A++F + +
Sbjct: 154 VKTTGIVETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDE 213
Query: 91 CPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDL 125
+R +S + + N+ +++ NK+DL
Sbjct: 214 EMNRMHESMKLFDSICNNKWFTDTSIILFLNKKDL 248
>pdb|3ONW|A Chain A, Structure Of A G-Alpha-I1 Mutant With Enhanced Affinity
For The Rgs14 Goloco Motif.
pdb|3ONW|B Chain B, Structure Of A G-Alpha-I1 Mutant With Enhanced Affinity
For The Rgs14 Goloco Motif
Length = 328
Score = 29.6 bits (65), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 19/95 (20%), Positives = 37/95 (38%), Gaps = 10/95 (10%)
Query: 41 VPTVGLNIGRIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVI----------DAA 90
V T G+ + +D+GGQ R W +E A++F + +
Sbjct: 153 VKTTGIVETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDE 212
Query: 91 CPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDL 125
+R +S + + N+ +++ NK+DL
Sbjct: 213 EMNRMHESMKLFDSICNNKWFTDTSIILFLNKKDL 247
>pdb|3D7M|A Chain A, Crystal Structure Of The G Protein Fast-Exchange Double
Mutant I56cQ333C
Length = 354
Score = 29.6 bits (65), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 19/95 (20%), Positives = 37/95 (38%), Gaps = 10/95 (10%)
Query: 41 VPTVGLNIGRIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVI----------DAA 90
V T G+ + +D+GGQ R W +E A++F + +
Sbjct: 179 VKTTGIVETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDE 238
Query: 91 CPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDL 125
+R +S + + N+ +++ NK+DL
Sbjct: 239 EMNRMHESMKLFDSICNNKWFTDTSIILFLNKKDL 273
>pdb|1AS0|A Chain A, Gtp-Gamma-S Bound G42v Gia1
pdb|1AS2|A Chain A, Gdp+pi Bound G42v Gia1
pdb|1AS3|A Chain A, Gdp Bound G42v Gia1
Length = 353
Score = 29.6 bits (65), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 19/95 (20%), Positives = 37/95 (38%), Gaps = 10/95 (10%)
Query: 41 VPTVGLNIGRIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVI----------DAA 90
V T G+ + +D+GGQ R W +E A++F + +
Sbjct: 178 VKTTGIVETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDE 237
Query: 91 CPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDL 125
+R +S + + N+ +++ NK+DL
Sbjct: 238 EMNRMHESMKLFDSICNNKWFTDTSIILFLNKKDL 272
>pdb|1GP2|A Chain A, G Protein Heterotrimer Gi_alpha_1 Beta_1 Gamma_2 With Gdp
Bound
pdb|1AGR|A Chain A, Complex Of Alf4-Activated Gi-Alpha-1 With Rgs4
pdb|1AGR|D Chain D, Complex Of Alf4-Activated Gi-Alpha-1 With Rgs4
pdb|1CIP|A Chain A, Gi-Alpha-1 Subunit Of Guanine Nucleotide-Binding Protein
Complexed With A Gtp Analogue
pdb|1BOF|A Chain A, Gi-Alpha-1 Bound To Gdp And Magnesium
pdb|1GDD|A Chain A, Tertiary And Quaternary Structural Changes In Gia1 Induced
By Gtp Hydrolysis
pdb|1GFI|A Chain A, Structures Of Active Conformations Of Gi Alpha 1 And The
Mechanism Of Gtp Hydrolysis
pdb|1GIA|A Chain A, Structure Of Active Conformations Of Gia1 And The
Mechanism Of Gtp Hydrolysis
Length = 353
Score = 29.3 bits (64), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 19/95 (20%), Positives = 37/95 (38%), Gaps = 10/95 (10%)
Query: 41 VPTVGLNIGRIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVI----------DAA 90
V T G+ + +D+GGQ R W +E A++F + +
Sbjct: 178 VKTTGIVETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDE 237
Query: 91 CPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDL 125
+R +S + + N+ +++ NK+DL
Sbjct: 238 EMNRMHESMKLFDSICNNKWFTDTSIILFLNKKDL 272
>pdb|3FFA|A Chain A, Crystal Structure Of A Fast Activating G Protein Mutant
pdb|3FFB|A Chain A, Gi-Alpha-1 Mutant In Gdp Bound Form
Length = 360
Score = 29.3 bits (64), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 19/95 (20%), Positives = 37/95 (38%), Gaps = 10/95 (10%)
Query: 41 VPTVGLNIGRIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVI----------DAA 90
V T G+ + +D+GGQ R W +E A++F + +
Sbjct: 185 VKTTGIVETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDE 244
Query: 91 CPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDL 125
+R +S + + N+ +++ NK+DL
Sbjct: 245 EMNRMHESMKLFDSICNNKWFTDTSIILFLNKKDL 279
>pdb|1GWN|A Chain A, The Crystal Structure Of The Core Domain Of RhoeRND3 - A
Constitutively Activated Small G Protein
pdb|1GWN|C Chain C, The Crystal Structure Of The Core Domain Of RhoeRND3 - A
Constitutively Activated Small G Protein
Length = 205
Score = 29.3 bits (64), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 27/104 (25%), Positives = 41/104 (39%), Gaps = 16/104 (15%)
Query: 37 PDRIVPTVGLNIG---RIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPS 93
P+ VPTV N I+ +L WD G P ++ Y ++ AV+ D + P
Sbjct: 54 PENYVPTVFENYTASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVLICFDISRPE 113
Query: 94 RFEDSKTALEKVLR------NEDLQGAPLLILANKQDLPDAVSA 131
L+ VL+ E +L++ K DL VS
Sbjct: 114 -------TLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRTDVST 150
>pdb|2ZJY|A Chain A, Structure Of The K349p Mutant Of Gi Alpha 1 Subunit Bound
To Alf4 And Gdp
pdb|2ZJZ|A Chain A, Structure Of The K349p Mutant Of Gi Alpha 1 Subunit Bound
To Gdp
pdb|2ZJZ|B Chain B, Structure Of The K349p Mutant Of Gi Alpha 1 Subunit Bound
To Gdp
Length = 356
Score = 29.3 bits (64), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 19/95 (20%), Positives = 37/95 (38%), Gaps = 10/95 (10%)
Query: 41 VPTVGLNIGRIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVI----------DAA 90
V T G+ + +D+GGQ R W +E A++F + +
Sbjct: 181 VKTTGIVETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDE 240
Query: 91 CPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDL 125
+R +S + + N+ +++ NK+DL
Sbjct: 241 EMNRMHESMKLFDSICNNKWFTDTSIILFLNKKDL 275
>pdb|1GOT|A Chain A, Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimera And
The Gt-Beta-Gamma Subunits
Length = 350
Score = 29.3 bits (64), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 19/95 (20%), Positives = 38/95 (40%), Gaps = 10/95 (10%)
Query: 41 VPTVGLNIGRIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVI----------DAA 90
V T G+ + + +D+GGQ R W +E A++F + +
Sbjct: 175 VKTTGIIETQFSFKDLNFRXFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDE 234
Query: 91 CPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDL 125
+R +S + + N+ +++ NK+DL
Sbjct: 235 EXNRXHESXKLFDSICNNKWFTDTSIILFLNKKDL 269
>pdb|3V00|C Chain C, Studies Of A Constitutively Active G-Alpha Subunit Provide
Insights Into The Mechanism Of G Protein Activation.
pdb|3V00|B Chain B, Studies Of A Constitutively Active G-Alpha Subunit Provide
Insights Into The Mechanism Of G Protein Activation.
pdb|3V00|A Chain A, Studies Of A Constitutively Active G-Alpha Subunit Provide
Insights Into The Mechanism Of G Protein Activation
Length = 356
Score = 29.3 bits (64), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 19/95 (20%), Positives = 37/95 (38%), Gaps = 10/95 (10%)
Query: 41 VPTVGLNIGRIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVI----------DAA 90
V T G+ + + +D+GGQ R W +E A++F + +
Sbjct: 181 VKTTGIIETQFSFKDLNFRMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDE 240
Query: 91 CPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDL 125
+R +S + N+ +++ NK+DL
Sbjct: 241 EMNRMHESMHLFNSICNNKWFTDTSIILFLNKKDL 275
>pdb|1RRP|A Chain A, Structure Of The Ran-Gppnhp-Ranbd1 Complex
pdb|1RRP|C Chain C, Structure Of The Ran-Gppnhp-Ranbd1 Complex
Length = 204
Score = 29.3 bits (64), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 15/71 (21%), Positives = 30/71 (42%), Gaps = 2/71 (2%)
Query: 57 KLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPL 116
K WD GQ + + YY +A + + D +++ ++R + P+
Sbjct: 53 KFNVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRV--CENIPI 110
Query: 117 LILANKQDLPD 127
++ NK D+ D
Sbjct: 111 VLCGNKVDIKD 121
>pdb|3EA5|A Chain A, Kap95p Binding Induces The Switch Loops Of Rangdp To Adopt
The Gtp- Bound Conformation: Implications For Nuclear
Import Complex Assembly Dynamics
pdb|3EA5|C Chain C, Kap95p Binding Induces The Switch Loops Of Rangdp To Adopt
The Gtp- Bound Conformation: Implications For Nuclear
Import Complex Assembly Dynamics
Length = 216
Score = 28.9 bits (63), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 15/71 (21%), Positives = 30/71 (42%), Gaps = 2/71 (2%)
Query: 57 KLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPL 116
K WD GQ + + YY +A + + D +++ ++R + P+
Sbjct: 60 KFNVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRV--CENIPI 117
Query: 117 LILANKQDLPD 127
++ NK D+ D
Sbjct: 118 VLCGNKVDIKD 128
>pdb|1A2K|C Chain C, Gdpran-Ntf2 Complex
pdb|1A2K|D Chain D, Gdpran-Ntf2 Complex
pdb|1A2K|E Chain E, Gdpran-Ntf2 Complex
pdb|1IBR|A Chain A, Complex Of Ran With Importin Beta
pdb|1IBR|C Chain C, Complex Of Ran With Importin Beta
pdb|1I2M|A Chain A, Ran-Rcc1-So4 Complex
pdb|1I2M|C Chain C, Ran-Rcc1-So4 Complex
pdb|1K5D|A Chain A, Crystal Structure Of Ran-Gppnhp-Ranbp1-Rangap Complex
pdb|1K5D|D Chain D, Crystal Structure Of Ran-Gppnhp-Ranbp1-Rangap Complex
pdb|1K5D|G Chain G, Crystal Structure Of Ran-Gppnhp-Ranbp1-Rangap Complex
pdb|1K5D|J Chain J, Crystal Structure Of Ran-Gppnhp-Ranbp1-Rangap Complex
pdb|1K5G|A Chain A, Crystal Structure Of Ran-Gdp-Alfx-Ranbp1-Rangap Complex
pdb|1K5G|D Chain D, Crystal Structure Of Ran-Gdp-Alfx-Ranbp1-Rangap Complex
pdb|1K5G|G Chain G, Crystal Structure Of Ran-Gdp-Alfx-Ranbp1-Rangap Complex
pdb|1K5G|J Chain J, Crystal Structure Of Ran-Gdp-Alfx-Ranbp1-Rangap Complex
pdb|3CH5|A Chain A, The Crystal Structure Of The Rangdp-Nup153znf2 Complex
pdb|3A6P|C Chain C, Crystal Structure Of Exportin-5:rangtp:pre-Mirna Complex
pdb|3A6P|H Chain H, Crystal Structure Of Exportin-5:rangtp:pre-Mirna Complex
pdb|4GPT|A Chain A, Crystal Structure Of Kpt251 In Complex With
Crm1-ran-ranbp1
pdb|4GMX|A Chain A, Crystal Structure Of Kpt185 In Complex With
Crm1-Ran-Ranbp1
pdb|4HAT|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1- Ran-ranbp1
pdb|4HAU|A Chain A, Crystal Structure Of Crm1 Inhibitor Ratjadone A In Complex
With Crm1- Ran-ranbp1
pdb|4HAV|A Chain A, Crystal Structure Of Crm1 Inhibitor Anguinomycin A In
Complex With Crm1-ran-ranbp1
pdb|4HAW|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1(k548a)-ran-ranbp1
pdb|4HAX|A Chain A, Crystal Structure Of Crm1 Inhibitor Ratjadone A In Complex
With Crm1(k579a)-ran-ranbp1
pdb|4HAY|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1(k548e,k579q)-ran-ranbp1
pdb|4HAZ|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1(r543s,k548e,k579q)-ran-ranbp1
pdb|4HB0|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With
Crm1(k541q,k542q,r543s,k545q,k548q,k579q)-ran-ranbp1
pdb|4HB2|A Chain A, Crystal Structure Of Crm1-ran-ranbp1
pdb|4HB3|A Chain A, Crystal Structure Of Crm1(t539s)-ran-ranbp1 Soaked In
Excess Crm1 Inhibitor Leptomycin B
pdb|4HB4|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1(537dltvk541/glceq)-ran-ranbp1
Length = 216
Score = 28.9 bits (63), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 15/71 (21%), Positives = 30/71 (42%), Gaps = 2/71 (2%)
Query: 57 KLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPL 116
K WD GQ + + YY +A + + D +++ ++R + P+
Sbjct: 60 KFNVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRV--CENIPI 117
Query: 117 LILANKQDLPD 127
++ NK D+ D
Sbjct: 118 VLCGNKVDIKD 128
>pdb|1UM0|A Chain A, Crystal Structure Of Chorismate Synthase Complexed With
Fmn
pdb|1UM0|B Chain B, Crystal Structure Of Chorismate Synthase Complexed With
Fmn
pdb|1UM0|C Chain C, Crystal Structure Of Chorismate Synthase Complexed With
Fmn
pdb|1UM0|D Chain D, Crystal Structure Of Chorismate Synthase Complexed With
Fmn
pdb|1UMF|A Chain A, Crystal Structure Of Chorismate Synthase
pdb|1UMF|B Chain B, Crystal Structure Of Chorismate Synthase
pdb|1UMF|C Chain C, Crystal Structure Of Chorismate Synthase
pdb|1UMF|D Chain D, Crystal Structure Of Chorismate Synthase
Length = 365
Score = 28.9 bits (63), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 40/92 (43%), Gaps = 12/92 (13%)
Query: 71 SIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILA----NKQDLP 126
I K Y+ HA+ I A + E KTA++ ++N D G LI A Q LP
Sbjct: 159 GIKAKNYDFNHALKSEIFALDEEQEEAQKTAIQNAIKNHDSIGGVALIRARSIKTNQKLP 218
Query: 127 DAVSADELARYLDLKKLDERVCMFEAVSGYDG 158
+ A KLD ++ EA+ G +G
Sbjct: 219 IGLGQGLYA------KLDAKIA--EAMMGLNG 242
>pdb|3GJ4|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf3 Complex
pdb|3GJ4|C Chain C, Crystal Structure Of Human Rangdp-Nup153znf3 Complex
pdb|3GJ5|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf4 Complex
pdb|3GJ5|C Chain C, Crystal Structure Of Human Rangdp-Nup153znf4 Complex
pdb|3GJ6|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf1 Complex
pdb|3GJ7|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf12 Complex
pdb|3GJ7|C Chain C, Crystal Structure Of Human Rangdp-Nup153znf12 Complex
pdb|3GJ8|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf34 Complex
pdb|3GJ8|C Chain C, Crystal Structure Of Human Rangdp-Nup153znf34 Complex
Length = 221
Score = 28.9 bits (63), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 15/71 (21%), Positives = 30/71 (42%), Gaps = 2/71 (2%)
Query: 57 KLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPL 116
K WD GQ + + YY +A + + D +++ ++R + P+
Sbjct: 65 KFNVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRV--CENIPI 122
Query: 117 LILANKQDLPD 127
++ NK D+ D
Sbjct: 123 VLCGNKVDIKD 133
>pdb|3GJ0|A Chain A, Crystal Structure Of Human Rangdp
pdb|3GJ0|B Chain B, Crystal Structure Of Human Rangdp
pdb|3GJ3|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf2 Complex
Length = 221
Score = 28.9 bits (63), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 15/71 (21%), Positives = 30/71 (42%), Gaps = 2/71 (2%)
Query: 57 KLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPL 116
K WD GQ + + YY +A + + D +++ ++R + P+
Sbjct: 65 KFNVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRV--CENIPI 122
Query: 117 LILANKQDLPD 127
++ NK D+ D
Sbjct: 123 VLCGNKVDIKD 133
>pdb|2IHB|A Chain A, Crystal Structure Of The Heterodimeric Complex Of Human
Rgs10 And Activated Gi Alpha 3
Length = 323
Score = 28.5 bits (62), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 19/95 (20%), Positives = 37/95 (38%), Gaps = 10/95 (10%)
Query: 41 VPTVGLNIGRIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVI----------DAA 90
V T G+ + +D+GGQ R W +E A++F + +
Sbjct: 148 VKTTGIVETHFTFKDLYFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDE 207
Query: 91 CPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDL 125
+R +S + + N+ +++ NK+DL
Sbjct: 208 EMNRMHESMKLFDSICNNKWFTETSIILFLNKKDL 242
>pdb|1QG2|A Chain A, Canine Gdp-Ran R76e Mutant
Length = 216
Score = 28.5 bits (62), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 15/71 (21%), Positives = 30/71 (42%), Gaps = 2/71 (2%)
Query: 57 KLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPL 116
K WD GQ + + YY +A + + D +++ ++R + P+
Sbjct: 60 KFNVWDTAGQEKFGGLEDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRV--CENIPI 117
Query: 117 LILANKQDLPD 127
++ NK D+ D
Sbjct: 118 VLCGNKVDIKD 128
>pdb|4G5O|A Chain A, Structure Of Lgn Gl4GALPHAI3(Q147L) COMPLEX
pdb|4G5O|B Chain B, Structure Of Lgn Gl4GALPHAI3(Q147L) COMPLEX
pdb|4G5O|C Chain C, Structure Of Lgn Gl4GALPHAI3(Q147L) COMPLEX
pdb|4G5O|D Chain D, Structure Of Lgn Gl4GALPHAI3(Q147L) COMPLEX
Length = 330
Score = 28.5 bits (62), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 19/95 (20%), Positives = 37/95 (38%), Gaps = 10/95 (10%)
Query: 41 VPTVGLNIGRIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVI----------DAA 90
V T G+ + +D+GGQ R W +E A++F + +
Sbjct: 155 VKTTGIVETHFTFKDLYFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDE 214
Query: 91 CPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDL 125
+R +S + + N+ +++ NK+DL
Sbjct: 215 EMNRMHESMKLFDSICNNKWFTETSIILFLNKKDL 249
>pdb|1ZW6|A Chain A, Crystal Structure Of The Gtp-Bound Form Of Rasq61g
Length = 166
Score = 28.5 bits (62), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 20/83 (24%), Positives = 35/83 (42%), Gaps = 4/83 (4%)
Query: 58 LVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLL 117
L D G ++ ++Y + V FED E++ R +D P++
Sbjct: 53 LDILDTAGGEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMV 112
Query: 118 ILANKQDLP----DAVSADELAR 136
++ NK DL ++ A +LAR
Sbjct: 113 LVGNKCDLAARTVESRQAQDLAR 135
>pdb|4G5R|A Chain A, Structure Of Lgn Gl4GALPHAI3 COMPLEX
pdb|4G5R|B Chain B, Structure Of Lgn Gl4GALPHAI3 COMPLEX
pdb|4G5R|C Chain C, Structure Of Lgn Gl4GALPHAI3 COMPLEX
pdb|4G5R|D Chain D, Structure Of Lgn Gl4GALPHAI3 COMPLEX
pdb|4G5S|A Chain A, Structure Of Lgn Gl3GALPHAI3 COMPLEX
pdb|4G5S|B Chain B, Structure Of Lgn Gl3GALPHAI3 COMPLEX
pdb|4G5S|C Chain C, Structure Of Lgn Gl3GALPHAI3 COMPLEX
pdb|4G5S|D Chain D, Structure Of Lgn Gl3GALPHAI3 COMPLEX
Length = 330
Score = 28.5 bits (62), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 19/95 (20%), Positives = 37/95 (38%), Gaps = 10/95 (10%)
Query: 41 VPTVGLNIGRIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVI----------DAA 90
V T G+ + +D+GGQ R W +E A++F + +
Sbjct: 155 VKTTGIVETHFTFKDLYFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDE 214
Query: 91 CPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDL 125
+R +S + + N+ +++ NK+DL
Sbjct: 215 EMNRMHESMKLFDSICNNKWFTETSIILFLNKKDL 249
>pdb|1ZVQ|A Chain A, Structure Of The Q61g Mutant Of Ras In The Gdp-Bound Form
Length = 166
Score = 28.5 bits (62), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 20/83 (24%), Positives = 35/83 (42%), Gaps = 4/83 (4%)
Query: 58 LVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLL 117
L D G ++ ++Y + V FED E++ R +D P++
Sbjct: 53 LDILDTAGGEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMV 112
Query: 118 ILANKQDLP----DAVSADELAR 136
++ NK DL ++ A +LAR
Sbjct: 113 LVGNKCDLAARTVESRQAQDLAR 135
>pdb|2ODE|A Chain A, Crystal Structure Of The Heterodimeric Complex Of Human
Rgs8 And Activated Gi Alpha 3
pdb|2ODE|C Chain C, Crystal Structure Of The Heterodimeric Complex Of Human
Rgs8 And Activated Gi Alpha 3
pdb|2V4Z|A Chain A, The Crystal Structure Of The Human G-Protein Subunit Alpha
( Gnai3) In Complex With An Engineered Regulator Of G-
Protein Signaling Type 2 Domain (Rgs2)
Length = 350
Score = 28.5 bits (62), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 19/95 (20%), Positives = 37/95 (38%), Gaps = 10/95 (10%)
Query: 41 VPTVGLNIGRIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVI----------DAA 90
V T G+ + +D+GGQ R W +E A++F + +
Sbjct: 178 VKTTGIVETHFTFKDLYFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDE 237
Query: 91 CPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDL 125
+R +S + + N+ +++ NK+DL
Sbjct: 238 EMNRMHESMKLFDSICNNKWFTETSIILFLNKKDL 272
>pdb|1QG4|A Chain A, Canine Gdp-Ran F72y Mutant
pdb|1QG4|B Chain B, Canine Gdp-Ran F72y Mutant
Length = 216
Score = 28.5 bits (62), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 15/71 (21%), Positives = 30/71 (42%), Gaps = 2/71 (2%)
Query: 57 KLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPL 116
K WD GQ + + YY +A + + D +++ ++R + P+
Sbjct: 60 KFNVWDTAGQEKYGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRV--CENIPI 117
Query: 117 LILANKQDLPD 127
++ NK D+ D
Sbjct: 118 VLCGNKVDIKD 128
>pdb|4EFN|A Chain A, Crystal Structure Of H-Ras Q61l In Complex With Gppnhp
(State 1)
Length = 171
Score = 28.1 bits (61), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 20/83 (24%), Positives = 35/83 (42%), Gaps = 4/83 (4%)
Query: 58 LVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLL 117
L D G ++ ++Y + V FED E++ R +D P++
Sbjct: 58 LDILDTAGLEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMV 117
Query: 118 ILANKQDLP----DAVSADELAR 136
++ NK DL ++ A +LAR
Sbjct: 118 LVGNKCDLAARTVESRQAQDLAR 140
>pdb|2RGC|A Chain A, Crystal Structure Of H-Rasq61v-Gppnhp
Length = 166
Score = 28.1 bits (61), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 20/83 (24%), Positives = 35/83 (42%), Gaps = 4/83 (4%)
Query: 58 LVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLL 117
L D G ++ ++Y + V FED E++ R +D P++
Sbjct: 53 LDILDTAGVEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMV 112
Query: 118 ILANKQDLP----DAVSADELAR 136
++ NK DL ++ A +LAR
Sbjct: 113 LVGNKCDLAARTVESRQAQDLAR 135
>pdb|1QBK|C Chain C, Structure Of The Karyopherin Beta2-ran Gppnhp Nuclear
Transport Complex
Length = 216
Score = 28.1 bits (61), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 15/71 (21%), Positives = 29/71 (40%), Gaps = 2/71 (2%)
Query: 57 KLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPL 116
K WD GQ + + YY +A + D +++ ++R + P+
Sbjct: 60 KFNVWDTAGQEKFGGLRDGYYIQAQCAIIXFDVTSRVTYKNVPNWHRDLVRV--CENIPI 117
Query: 117 LILANKQDLPD 127
++ NK D+ D
Sbjct: 118 VLCGNKVDIKD 128
>pdb|721P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants:
Molecular Basis For Their Inability To Function As
Signal Switch Molecules
pdb|2RGD|A Chain A, Crystal Structure Of H-Rasq61l-Gppnhp
pdb|3OIU|A Chain A, H-Rasq61l With Allosteric Switch In The "on" State
Length = 166
Score = 28.1 bits (61), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 20/83 (24%), Positives = 35/83 (42%), Gaps = 4/83 (4%)
Query: 58 LVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLL 117
L D G ++ ++Y + V FED E++ R +D P++
Sbjct: 53 LDILDTAGLEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMV 112
Query: 118 ILANKQDLP----DAVSADELAR 136
++ NK DL ++ A +LAR
Sbjct: 113 LVGNKCDLAARTVESRQAQDLAR 135
>pdb|2J1L|A Chain A, Crystal Structure Of Human Rho-Related Gtp-Binding Protein
Rhod
Length = 214
Score = 28.1 bits (61), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 21/97 (21%), Positives = 42/97 (43%), Gaps = 6/97 (6%)
Query: 33 EGLPPDRIVPTV----GLNIGRIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVID 88
+G P+ PTV +N+ +++ L WD GQ + +Y +A ++ D
Sbjct: 56 DGAFPESYTPTVFERYMVNL-QVKGKPVHLHIWDTAGQDDYDRLRPLFYPDASVLLLCFD 114
Query: 89 AACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDL 125
P+ F++ + N + P++++ K DL
Sbjct: 115 VTSPNSFDNIFNRWYPEV-NHFCKKVPIIVVGCKTDL 150
>pdb|2RGA|A Chain A, Crystal Structure Of H-Rasq61i-Gppnhp
pdb|2RGG|A Chain A, Crystal Structure Of H-Rasq61i-Gppnhp, Trigonal Crystal
Form
Length = 166
Score = 28.1 bits (61), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 20/83 (24%), Positives = 35/83 (42%), Gaps = 4/83 (4%)
Query: 58 LVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLL 117
L D G ++ ++Y + V FED E++ R +D P++
Sbjct: 53 LDILDTAGIEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMV 112
Query: 118 ILANKQDLP----DAVSADELAR 136
++ NK DL ++ A +LAR
Sbjct: 113 LVGNKCDLAARTVESRQAQDLAR 135
>pdb|2FYF|A Chain A, Structure Of A Putative Phosphoserine Aminotransferase
From Mycobacterium Tuberculosis
pdb|2FYF|B Chain B, Structure Of A Putative Phosphoserine Aminotransferase
From Mycobacterium Tuberculosis
pdb|3VOM|A Chain A, Structure Of A Putative Phosphoserine Aminotransferase
From Mycobacterium Tuberculosis
pdb|3VOM|B Chain B, Structure Of A Putative Phosphoserine Aminotransferase
From Mycobacterium Tuberculosis
Length = 398
Score = 27.7 bits (60), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 14/34 (41%), Positives = 18/34 (52%)
Query: 137 YLDLKKLDERVCMFEAVSGYDGFGIKESVEWLVE 170
Y L + RV MF AV D + E V+W+VE
Sbjct: 363 YRKLGRNQLRVAMFPAVEPDDVSALTECVDWVVE 396
>pdb|2OCB|A Chain A, Crystal Structure Of Human Rab9b In Complex With A Gtp
Analogue
Length = 180
Score = 27.3 bits (59), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 19/82 (23%), Positives = 32/82 (39%), Gaps = 3/82 (3%)
Query: 58 LVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGA--- 114
L WD GQ +S+ +Y A + FE+ ++ + D++
Sbjct: 58 LQIWDTAGQERFKSLRTPFYRGADCCLLTFSVDDRQSFENLGNWQKEFIYYADVKDPEHF 117
Query: 115 PLLILANKQDLPDAVSADELAR 136
P ++L NK D D E A+
Sbjct: 118 PFVVLGNKVDKEDRQVTTEEAQ 139
>pdb|3UMS|A Chain A, Crystal Structure Of The G202a Mutant Of Human G-Alpha-I1
Length = 354
Score = 27.3 bits (59), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 18/95 (18%), Positives = 36/95 (37%), Gaps = 10/95 (10%)
Query: 41 VPTVGLNIGRIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVI----------DAA 90
V T G+ + +D+ GQ R W +E A++F + +
Sbjct: 179 VKTTGIVETHFTFKDLHFKMFDVAGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDE 238
Query: 91 CPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDL 125
+R +S + + N+ +++ NK+DL
Sbjct: 239 EMNRMHESMKLFDSICNNKWFTDTSIILFLNKKDL 273
>pdb|1GG2|A Chain A, G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Beta_1
Gamma_2 With Gdp Bound
pdb|1GIT|A Chain A, Structure Of Gtp-Binding Protein
Length = 353
Score = 27.3 bits (59), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 18/95 (18%), Positives = 36/95 (37%), Gaps = 10/95 (10%)
Query: 41 VPTVGLNIGRIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVI----------DAA 90
V T G+ + +D+G Q R W +E A++F + +
Sbjct: 178 VKTTGIVETHFTFKDLHFKMFDVGAQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDE 237
Query: 91 CPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDL 125
+R +S + + N+ +++ NK+DL
Sbjct: 238 EMNRMHESMKLFDSICNNKWFTDTSIILFLNKKDL 272
>pdb|2XTZ|A Chain A, Crystal Structure Of The G Alpha Protein Atgpa1 From
Arabidopsis Thaliana
pdb|2XTZ|B Chain B, Crystal Structure Of The G Alpha Protein Atgpa1 From
Arabidopsis Thaliana
pdb|2XTZ|C Chain C, Crystal Structure Of The G Alpha Protein Atgpa1 From
Arabidopsis Thaliana
Length = 354
Score = 26.9 bits (58), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 22/88 (25%), Positives = 36/88 (40%), Gaps = 10/88 (11%)
Query: 48 IGRIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVF--VIDAACPSRFED-------- 97
+G + S +D+GGQ R W +E AV+F I + FED
Sbjct: 175 VGENKKSGEVYRLFDVGGQRNERRKWIHLFEGVTAVIFCAAISEYDQTLFEDEQKNRMME 234
Query: 98 SKTALEKVLRNEDLQGAPLLILANKQDL 125
+K + VL+ + ++ NK D+
Sbjct: 235 TKELFDWVLKQPCFEKTSFMLFLNKFDI 262
>pdb|2VYE|A Chain A, Crystal Structure Of The Dnac-Ssdna Complex
pdb|2VYE|B Chain B, Crystal Structure Of The Dnac-Ssdna Complex
pdb|2VYF|A Chain A, Crystal Structure Of The Dnac
pdb|2VYF|B Chain B, Crystal Structure Of The Dnac
Length = 454
Score = 26.6 bits (57), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 31/124 (25%), Positives = 52/124 (41%), Gaps = 8/124 (6%)
Query: 70 RSIWEKYYEEAHAVVF-----VIDAACPSRFEDSKTALEKVLRNEDLQGAPLLI-LANKQ 123
R I E +Y AH +F V D P L + + E++ G L LA+
Sbjct: 37 RLIPEDFYRAAHQKIFHAMLRVADKGEPVDLVTVTAELAALEQLEEVGGVSYLSELADS- 95
Query: 124 DLPDAVSADELARYLDLKKLDERVCMFEAVSGYDGFGIKESVEWLVEVMERSKRTEMLRA 183
+P A + + AR ++ K L R+ DG+ ++ ++ L++ ER R
Sbjct: 96 -VPTAANVEYYARIVEEKSLLRRLIRTATSIAQDGYTREDEIDVLLDEAERKIMEVSQRK 154
Query: 184 RAGA 187
+GA
Sbjct: 155 HSGA 158
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.137 0.403
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,705,424
Number of Sequences: 62578
Number of extensions: 225174
Number of successful extensions: 942
Number of sequences better than 100.0: 287
Number of HSP's better than 100.0 without gapping: 210
Number of HSP's successfully gapped in prelim test: 77
Number of HSP's that attempted gapping in prelim test: 723
Number of HSP's gapped (non-prelim): 287
length of query: 192
length of database: 14,973,337
effective HSP length: 93
effective length of query: 99
effective length of database: 9,153,583
effective search space: 906204717
effective search space used: 906204717
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 49 (23.5 bits)