Query 029517
Match_columns 192
No_of_seqs 132 out of 1445
Neff 9.7
Searched_HMMs 46136
Date Fri Mar 29 14:10:53 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029517.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/029517hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0084 GTPase Rab1/YPT1, smal 100.0 9.6E-32 2.1E-36 191.8 13.4 147 19-177 23-176 (205)
2 PLN00223 ADP-ribosylation fact 100.0 2E-29 4.4E-34 184.6 19.0 167 1-174 1-179 (181)
3 KOG0092 GTPase Rab5/YPT51 and 100.0 6.2E-30 1.4E-34 181.8 11.2 149 20-180 20-174 (200)
4 PTZ00133 ADP-ribosylation fact 100.0 1.7E-28 3.7E-33 179.9 19.2 169 1-176 1-181 (182)
5 KOG0094 GTPase Rab6/YPT6/Ryh1, 100.0 1.9E-29 4.2E-34 179.5 12.8 146 20-176 37-188 (221)
6 KOG0078 GTP-binding protein SE 100.0 4.3E-29 9.3E-34 180.5 14.5 147 20-178 27-179 (207)
7 cd04120 Rab12 Rab12 subfamily. 100.0 3E-28 6.6E-33 181.0 16.8 138 34-176 23-166 (202)
8 KOG0098 GTPase Rab2, small G p 100.0 1.4E-28 3E-33 174.0 12.5 150 19-180 20-175 (216)
9 KOG0070 GTP-binding ADP-ribosy 100.0 1.6E-28 3.5E-33 174.0 12.3 168 1-175 1-180 (181)
10 cd04121 Rab40 Rab40 subfamily. 100.0 5.7E-28 1.2E-32 177.9 15.8 145 20-177 21-171 (189)
11 KOG0093 GTPase Rab3, small G p 100.0 1.3E-28 2.8E-33 167.7 8.9 148 19-178 35-188 (193)
12 cd04149 Arf6 Arf6 subfamily. 100.0 5.2E-27 1.1E-31 169.9 17.3 132 39-170 36-167 (168)
13 smart00177 ARF ARF-like small 100.0 1E-26 2.2E-31 169.4 17.9 146 20-172 28-173 (175)
14 cd04150 Arf1_5_like Arf1-Arf5- 100.0 1E-26 2.2E-31 167.0 17.2 146 14-170 13-158 (159)
15 KOG0394 Ras-related GTPase [Ge 100.0 3.3E-28 7.1E-33 171.7 9.0 149 20-178 24-183 (210)
16 cd04133 Rop_like Rop subfamily 100.0 2.6E-27 5.7E-32 172.5 14.0 141 20-173 16-173 (176)
17 cd01875 RhoG RhoG subfamily. 99.9 7.6E-27 1.7E-31 172.4 15.2 143 20-175 18-179 (191)
18 cd04158 ARD1 ARD1 subfamily. 99.9 3.7E-26 8.1E-31 165.5 18.4 151 14-175 12-163 (169)
19 cd04157 Arl6 Arl6 subfamily. 99.9 1.5E-26 3.4E-31 165.9 16.0 148 14-170 12-161 (162)
20 cd04141 Rit_Rin_Ric Rit/Rin/Ri 99.9 1.1E-26 2.5E-31 168.8 15.4 138 34-176 25-167 (172)
21 KOG0079 GTP-binding protein H- 99.9 2.7E-27 5.7E-32 161.6 11.2 145 19-176 22-172 (198)
22 smart00176 RAN Ran (Ras-relate 99.9 1.2E-26 2.6E-31 172.2 15.4 134 34-175 18-156 (200)
23 KOG0086 GTPase Rab4, small G p 99.9 5.1E-27 1.1E-31 161.1 12.0 155 15-181 19-179 (214)
24 KOG0076 GTP-binding ADP-ribosy 99.9 2E-27 4.3E-32 166.2 9.7 175 1-175 1-189 (197)
25 PTZ00099 rab6; Provisional 99.9 1.4E-26 3.1E-31 168.6 14.7 136 34-175 3-144 (176)
26 cd04172 Rnd3_RhoE_Rho8 Rnd3/Rh 99.9 1.4E-26 3E-31 169.6 14.6 141 20-173 20-180 (182)
27 cd04154 Arl2 Arl2 subfamily. 99.9 2.6E-26 5.6E-31 166.9 15.4 146 14-170 27-172 (173)
28 cd04174 Rnd1_Rho6 Rnd1/Rho6 su 99.9 2.8E-26 6.1E-31 173.3 16.0 143 20-175 28-190 (232)
29 cd04160 Arfrp1 Arfrp1 subfamil 99.9 4.4E-26 9.5E-31 164.4 16.3 153 14-170 12-166 (167)
30 KOG0080 GTPase Rab18, small G 99.9 5.1E-27 1.1E-31 162.2 10.7 145 20-175 26-176 (209)
31 cd04126 Rab20 Rab20 subfamily. 99.9 6.6E-26 1.4E-30 170.3 17.5 160 14-185 13-202 (220)
32 KOG0087 GTPase Rab11/YPT3, sma 99.9 1.1E-26 2.4E-31 167.5 12.1 155 10-176 12-179 (222)
33 cd04107 Rab32_Rab38 Rab38/Rab3 99.9 9E-26 2E-30 167.9 17.1 148 14-176 13-171 (201)
34 PF00025 Arf: ADP-ribosylation 99.9 3.2E-26 7E-31 166.8 14.3 146 20-172 29-175 (175)
35 cd04122 Rab14 Rab14 subfamily. 99.9 8.1E-26 1.8E-30 163.1 16.2 145 14-174 15-165 (166)
36 cd04131 Rnd Rnd subfamily. Th 99.9 5.7E-26 1.2E-30 165.9 14.3 133 34-173 24-176 (178)
37 cd04153 Arl5_Arl8 Arl5/Arl8 su 99.9 3E-25 6.4E-30 161.6 17.8 144 20-170 30-173 (174)
38 cd04161 Arl2l1_Arl13_like Arl2 99.9 2.8E-25 6.2E-30 160.6 17.5 146 14-170 12-166 (167)
39 KOG0075 GTP-binding ADP-ribosy 99.9 4.5E-26 9.7E-31 155.3 12.3 141 34-174 43-183 (186)
40 cd00877 Ran Ran (Ras-related n 99.9 9.7E-26 2.1E-30 162.9 14.9 145 14-175 13-161 (166)
41 KOG0091 GTPase Rab39, small G 99.9 2.5E-26 5.4E-31 159.3 11.0 151 18-179 21-179 (213)
42 PTZ00369 Ras-like protein; Pro 99.9 1.8E-25 3.9E-30 164.8 16.2 138 34-176 28-170 (189)
43 KOG0071 GTP-binding ADP-ribosy 99.9 1.9E-25 4E-30 151.2 14.7 166 1-173 1-178 (180)
44 KOG0095 GTPase Rab30, small G 99.9 2E-26 4.3E-31 157.7 10.0 156 9-176 4-172 (213)
45 PLN03071 GTP-binding nuclear p 99.9 1.6E-25 3.5E-30 168.6 15.5 142 20-175 28-174 (219)
46 cd04175 Rap1 Rap1 subgroup. T 99.9 1.5E-25 3.3E-30 161.3 14.5 145 14-173 14-163 (164)
47 cd04127 Rab27A Rab27a subfamil 99.9 3.5E-25 7.7E-30 161.7 16.4 146 14-174 17-178 (180)
48 cd04162 Arl9_Arfrp2_like Arl9/ 99.9 4.6E-25 1E-29 159.1 16.5 145 14-170 12-163 (164)
49 cd04151 Arl1 Arl1 subfamily. 99.9 7.1E-25 1.5E-29 157.0 16.7 146 14-170 12-157 (158)
50 cd04144 Ras2 Ras2 subfamily. 99.9 3.4E-25 7.3E-30 163.5 14.9 151 14-179 12-169 (190)
51 cd01874 Cdc42 Cdc42 subfamily. 99.9 4.7E-25 1E-29 160.7 15.1 133 34-172 24-174 (175)
52 cd04128 Spg1 Spg1p. Spg1p (se 99.9 4.9E-25 1.1E-29 161.5 15.0 136 34-176 23-169 (182)
53 cd04173 Rnd2_Rho7 Rnd2/Rho7 su 99.9 9.4E-25 2E-29 164.2 15.7 135 34-175 24-178 (222)
54 cd01865 Rab3 Rab3 subfamily. 99.9 1.4E-24 3E-29 156.6 15.9 145 14-174 14-164 (165)
55 cd04110 Rab35 Rab35 subfamily. 99.9 1.5E-24 3.3E-29 161.1 16.5 148 14-178 19-172 (199)
56 cd01867 Rab8_Rab10_Rab13_like 99.9 1.7E-24 3.8E-29 156.4 16.1 145 14-174 16-166 (167)
57 cd04108 Rab36_Rab34 Rab34/Rab3 99.9 1.6E-24 3.5E-29 157.1 15.9 136 34-174 23-166 (170)
58 cd04117 Rab15 Rab15 subfamily. 99.9 1.5E-24 3.2E-29 155.9 15.3 142 14-171 13-160 (161)
59 cd04136 Rap_like Rap-like subf 99.9 1.1E-24 2.3E-29 156.4 14.5 144 14-172 14-162 (163)
60 cd04119 RJL RJL (RabJ-Like) su 99.9 2E-24 4.4E-29 155.4 15.8 145 14-173 13-167 (168)
61 smart00178 SAR Sar1p-like memb 99.9 6.1E-24 1.3E-28 156.0 17.9 145 20-171 32-183 (184)
62 cd04138 H_N_K_Ras_like H-Ras/N 99.9 2.8E-24 6.1E-29 153.8 15.5 144 14-172 14-161 (162)
63 cd01869 Rab1_Ypt1 Rab1/Ypt1 su 99.9 3.6E-24 7.9E-29 154.4 16.2 144 14-173 15-164 (166)
64 cd04111 Rab39 Rab39 subfamily. 99.9 2.5E-24 5.5E-29 161.3 15.7 149 14-177 15-170 (211)
65 cd04109 Rab28 Rab28 subfamily. 99.9 4.7E-24 1E-28 160.3 17.1 147 14-175 13-168 (215)
66 cd04112 Rab26 Rab26 subfamily. 99.9 1.7E-24 3.6E-29 159.9 14.2 147 14-176 13-166 (191)
67 cd04134 Rho3 Rho3 subfamily. 99.9 1.5E-24 3.2E-29 159.9 13.6 147 14-176 13-177 (189)
68 KOG0097 GTPase Rab14, small G 99.9 1.4E-24 3.1E-29 147.4 12.2 153 19-183 25-183 (215)
69 cd01871 Rac1_like Rac1-like su 99.9 2E-24 4.4E-29 157.2 14.0 131 34-171 24-173 (174)
70 cd00878 Arf_Arl Arf (ADP-ribos 99.9 7.1E-24 1.5E-28 151.6 16.6 146 14-170 12-157 (158)
71 PLN03110 Rab GTPase; Provision 99.9 5.6E-24 1.2E-28 160.0 16.4 138 34-177 35-178 (216)
72 cd04125 RabA_like RabA-like su 99.9 6.2E-24 1.4E-28 156.4 16.2 149 14-178 13-167 (188)
73 cd04152 Arl4_Arl7 Arl4/Arl7 su 99.9 1.6E-23 3.4E-28 153.7 18.1 152 14-176 16-173 (183)
74 cd04145 M_R_Ras_like M-Ras/R-R 99.9 5.1E-24 1.1E-28 153.0 15.2 144 14-172 15-163 (164)
75 cd04156 ARLTS1 ARLTS1 subfamil 99.9 9.1E-24 2E-28 151.3 15.6 146 14-170 12-159 (160)
76 cd04176 Rap2 Rap2 subgroup. T 99.9 5E-24 1.1E-28 153.2 14.2 144 14-172 14-162 (163)
77 PF00071 Ras: Ras family; Int 99.9 4.3E-24 9.4E-29 153.3 13.9 144 14-173 12-161 (162)
78 smart00173 RAS Ras subfamily o 99.9 9E-24 1.9E-28 151.9 15.5 146 14-174 13-163 (164)
79 cd04106 Rab23_lke Rab23-like s 99.9 9.9E-24 2.1E-28 151.3 15.5 141 14-171 13-161 (162)
80 cd04124 RabL2 RabL2 subfamily. 99.9 1.3E-23 2.9E-28 151.0 15.2 144 14-175 13-160 (161)
81 cd01873 RhoBTB RhoBTB subfamil 99.9 5E-24 1.1E-28 157.7 13.3 129 34-171 31-194 (195)
82 cd04116 Rab9 Rab9 subfamily. 99.9 1.4E-23 3E-28 151.9 15.2 143 14-171 18-169 (170)
83 cd04132 Rho4_like Rho4-like su 99.9 1.5E-23 3.2E-28 154.1 15.5 149 14-179 13-173 (187)
84 PLN03108 Rab family protein; P 99.9 2.3E-23 5E-28 156.0 16.7 148 14-177 19-172 (210)
85 KOG0073 GTP-binding ADP-ribosy 99.9 3.5E-23 7.5E-28 143.7 15.9 148 20-174 31-179 (185)
86 cd00879 Sar1 Sar1 subfamily. 99.9 4.5E-23 9.7E-28 151.9 17.6 134 38-171 45-189 (190)
87 cd04140 ARHI_like ARHI subfami 99.9 1.7E-23 3.8E-28 150.8 15.0 142 14-170 14-162 (165)
88 cd01866 Rab2 Rab2 subfamily. 99.9 3.3E-23 7.1E-28 149.9 16.3 145 14-174 17-167 (168)
89 KOG0088 GTPase Rab21, small G 99.9 1.3E-25 2.9E-30 155.0 3.5 128 53-186 59-189 (218)
90 cd01868 Rab11_like Rab11-like. 99.9 3.3E-23 7.3E-28 149.1 15.7 143 14-172 16-164 (165)
91 cd04118 Rab24 Rab24 subfamily. 99.9 2.2E-23 4.7E-28 154.0 14.8 146 14-176 13-169 (193)
92 cd04115 Rab33B_Rab33A Rab33B/R 99.9 3E-23 6.5E-28 150.4 15.2 144 14-172 15-168 (170)
93 KOG0081 GTPase Rab27, small G 99.9 4.1E-24 8.8E-29 147.7 10.0 141 31-176 29-184 (219)
94 cd04113 Rab4 Rab4 subfamily. 99.9 3E-23 6.5E-28 148.8 14.9 142 14-171 13-160 (161)
95 smart00174 RHO Rho (Ras homolo 99.9 2.2E-23 4.7E-28 151.4 14.2 143 14-173 11-172 (174)
96 cd04155 Arl3 Arl3 subfamily. 99.9 4.1E-23 8.8E-28 149.8 15.6 133 38-170 40-172 (173)
97 cd01864 Rab19 Rab19 subfamily. 99.9 4E-23 8.6E-28 148.9 15.3 143 14-171 16-164 (165)
98 cd04103 Centaurin_gamma Centau 99.9 4.3E-23 9.2E-28 148.0 15.0 128 35-171 24-157 (158)
99 cd04177 RSR1 RSR1 subgroup. R 99.9 3.4E-23 7.4E-28 149.7 14.6 146 14-173 14-164 (168)
100 cd04159 Arl10_like Arl10-like 99.9 2E-22 4.4E-27 143.3 17.8 147 14-170 12-158 (159)
101 cd04143 Rhes_like Rhes_like su 99.9 8.3E-23 1.8E-27 156.2 16.8 145 14-172 13-170 (247)
102 KOG0083 GTPase Rab26/Rab37, sm 99.9 2.1E-24 4.6E-29 145.1 6.0 133 38-176 25-163 (192)
103 cd04101 RabL4 RabL4 (Rab-like4 99.9 1.4E-22 3E-27 145.7 15.3 131 35-172 26-163 (164)
104 cd04146 RERG_RasL11_like RERG/ 99.9 4.7E-23 1E-27 148.5 12.5 145 14-173 12-164 (165)
105 PLN03118 Rab family protein; P 99.9 1.5E-22 3.3E-27 151.6 15.6 146 14-175 27-179 (211)
106 smart00175 RAB Rab subfamily o 99.9 2.5E-22 5.4E-27 144.1 15.9 145 14-174 13-163 (164)
107 cd01863 Rab18 Rab18 subfamily. 99.9 1.9E-22 4.1E-27 144.6 15.0 143 14-171 13-160 (161)
108 cd04139 RalA_RalB RalA/RalB su 99.9 1.7E-22 3.7E-27 144.9 14.8 145 14-173 13-162 (164)
109 cd04142 RRP22 RRP22 subfamily. 99.9 1.3E-22 2.8E-27 150.6 13.8 150 14-177 13-178 (198)
110 KOG0395 Ras-related GTPase [Ge 99.9 1.3E-22 2.8E-27 149.7 13.4 138 34-176 26-168 (196)
111 cd01860 Rab5_related Rab5-rela 99.9 4.3E-22 9.2E-27 142.9 15.7 143 14-172 14-162 (163)
112 cd01861 Rab6 Rab6 subfamily. 99.9 3.2E-22 6.8E-27 143.3 15.0 143 13-171 12-160 (161)
113 cd04123 Rab21 Rab21 subfamily. 99.9 2.7E-22 5.8E-27 143.5 13.9 143 14-172 13-161 (162)
114 KOG0072 GTP-binding ADP-ribosy 99.9 3.4E-23 7.4E-28 140.8 8.3 142 34-175 40-181 (182)
115 cd04148 RGK RGK subfamily. Th 99.9 6.3E-22 1.4E-26 149.3 14.9 147 14-177 13-167 (221)
116 cd04130 Wrch_1 Wrch-1 subfamil 99.9 4.6E-22 1E-26 144.5 13.3 130 34-170 23-171 (173)
117 cd01862 Rab7 Rab7 subfamily. 99.9 1.8E-21 3.8E-26 140.8 16.1 147 14-175 13-169 (172)
118 cd04114 Rab30 Rab30 subfamily. 99.9 2.4E-21 5.3E-26 139.9 14.9 143 14-172 20-168 (169)
119 cd01892 Miro2 Miro2 subfamily. 99.9 8.8E-22 1.9E-26 142.6 12.4 132 34-173 27-166 (169)
120 cd00154 Rab Rab family. Rab G 99.9 1.2E-21 2.6E-26 139.2 12.8 140 14-169 13-158 (159)
121 cd04137 RheB Rheb (Ras Homolog 99.9 2.1E-21 4.6E-26 141.7 14.2 149 14-177 14-167 (180)
122 cd04147 Ras_dva Ras-dva subfam 99.9 5.8E-21 1.3E-25 141.7 16.6 146 14-173 12-163 (198)
123 cd04129 Rho2 Rho2 subfamily. 99.9 1.8E-21 3.9E-26 143.2 13.0 149 14-179 14-179 (187)
124 cd01870 RhoA_like RhoA-like su 99.9 2.8E-21 6E-26 140.4 13.4 143 14-172 14-174 (175)
125 cd04135 Tc10 TC10 subfamily. 99.9 3.1E-21 6.8E-26 140.0 13.2 142 14-172 13-173 (174)
126 cd00876 Ras Ras family. The R 99.9 5.2E-21 1.1E-25 136.6 13.0 143 14-171 12-159 (160)
127 PTZ00132 GTP-binding nuclear p 99.9 5E-20 1.1E-24 138.4 16.6 135 34-175 32-170 (215)
128 cd01893 Miro1 Miro1 subfamily. 99.8 6.4E-20 1.4E-24 132.4 15.2 118 51-174 42-165 (166)
129 cd01897 NOG NOG1 is a nucleola 99.8 9.6E-20 2.1E-24 131.4 14.2 144 14-172 13-167 (168)
130 cd01890 LepA LepA subfamily. 99.8 1.1E-19 2.3E-24 132.5 13.4 146 14-172 13-176 (179)
131 cd00157 Rho Rho (Ras homology) 99.8 1E-19 2.2E-24 131.5 13.1 140 14-170 13-170 (171)
132 cd01898 Obg Obg subfamily. Th 99.8 2E-19 4.3E-24 129.9 13.1 146 14-171 13-169 (170)
133 PRK12299 obgE GTPase CgtA; Rev 99.8 4.3E-19 9.3E-24 140.9 15.3 150 14-176 171-331 (335)
134 KOG0074 GTP-binding ADP-ribosy 99.8 8.6E-20 1.9E-24 124.0 9.5 146 20-172 32-178 (185)
135 cd04171 SelB SelB subfamily. 99.8 2.7E-19 5.8E-24 128.3 12.3 144 14-170 13-163 (164)
136 cd04102 RabL3 RabL3 (Rab-like3 99.8 9.1E-19 2E-23 130.0 13.6 94 34-127 23-143 (202)
137 KOG0393 Ras-related small GTPa 99.8 2.5E-19 5.5E-24 130.2 9.4 141 31-177 24-183 (198)
138 TIGR02729 Obg_CgtA Obg family 99.8 2.2E-18 4.7E-23 136.7 14.8 147 14-172 170-328 (329)
139 KOG4252 GTP-binding protein [S 99.8 7.6E-20 1.6E-24 129.0 3.1 138 34-178 43-186 (246)
140 cd01881 Obg_like The Obg-like 99.8 3.7E-18 8E-23 123.8 11.6 145 14-171 9-175 (176)
141 cd01879 FeoB Ferrous iron tran 99.8 5.2E-18 1.1E-22 120.9 11.6 140 14-173 9-157 (158)
142 cd01878 HflX HflX subfamily. 99.8 1.1E-17 2.5E-22 124.5 13.8 141 14-172 54-204 (204)
143 cd01887 IF2_eIF5B IF2/eIF5B (i 99.8 1.5E-17 3.3E-22 119.7 13.7 146 14-173 13-166 (168)
144 cd01894 EngA1 EngA1 subfamily. 99.8 1.4E-17 3.1E-22 118.3 12.8 138 14-171 10-156 (157)
145 PRK12296 obgE GTPase CgtA; Rev 99.8 7.8E-18 1.7E-22 138.8 12.9 150 14-176 172-343 (500)
146 cd00882 Ras_like_GTPase Ras-li 99.8 1.9E-17 4.1E-22 115.9 13.3 142 14-169 9-156 (157)
147 PRK12297 obgE GTPase CgtA; Rev 99.8 1.6E-17 3.4E-22 135.2 14.5 148 14-176 171-330 (424)
148 cd00881 GTP_translation_factor 99.8 5.3E-17 1.1E-21 118.9 16.0 155 14-173 12-187 (189)
149 PLN00023 GTP-binding protein; 99.8 9.9E-18 2.1E-22 130.9 12.7 114 20-139 36-185 (334)
150 TIGR00231 small_GTP small GTP- 99.8 4.3E-17 9.3E-22 115.3 14.0 141 14-169 14-160 (161)
151 TIGR00436 era GTP-binding prot 99.8 1.3E-17 2.9E-22 129.3 12.3 145 13-174 12-165 (270)
152 PRK03003 GTP-binding protein D 99.8 3.1E-17 6.6E-22 136.4 14.8 146 14-175 224-384 (472)
153 TIGR02528 EutP ethanolamine ut 99.8 3.9E-18 8.5E-23 119.8 8.1 122 14-169 13-141 (142)
154 TIGR03156 GTP_HflX GTP-binding 99.8 2.5E-17 5.4E-22 131.8 13.5 139 14-171 202-350 (351)
155 PRK15494 era GTPase Era; Provi 99.7 2.1E-17 4.6E-22 131.9 13.0 145 13-174 64-217 (339)
156 cd01891 TypA_BipA TypA (tyrosi 99.7 5.6E-17 1.2E-21 120.0 13.8 146 14-164 15-173 (194)
157 PRK03003 GTP-binding protein D 99.7 3.3E-17 7.1E-22 136.2 13.7 143 13-174 50-200 (472)
158 cd01889 SelB_euk SelB subfamil 99.7 4E-17 8.7E-22 120.5 12.2 154 14-173 13-186 (192)
159 TIGR01393 lepA GTP-binding pro 99.7 8.4E-17 1.8E-21 136.5 15.3 149 14-175 16-182 (595)
160 PRK05291 trmE tRNA modificatio 99.7 4.5E-17 9.7E-22 134.4 13.1 136 14-174 228-371 (449)
161 TIGR03594 GTPase_EngA ribosome 99.7 4.1E-17 9E-22 134.3 12.6 149 14-174 185-345 (429)
162 TIGR00450 mnmE_trmE_thdF tRNA 99.7 7.2E-17 1.6E-21 132.6 13.2 139 14-175 216-362 (442)
163 PF02421 FeoB_N: Ferrous iron 99.7 2.1E-17 4.6E-22 117.1 8.1 133 13-168 12-156 (156)
164 cd01888 eIF2_gamma eIF2-gamma 99.7 9.8E-17 2.1E-21 119.5 11.0 114 56-174 83-200 (203)
165 COG2229 Predicted GTPase [Gene 99.7 3.7E-16 8E-21 111.1 13.3 152 13-171 22-176 (187)
166 cd04164 trmE TrmE (MnmE, ThdF, 99.7 4.7E-16 1E-20 110.4 13.3 135 14-172 14-156 (157)
167 KOG0096 GTPase Ran/TC4/GSP1 (n 99.7 2.3E-17 5.1E-22 117.4 6.3 135 34-175 33-171 (216)
168 PRK00093 GTP-binding protein D 99.7 3.4E-16 7.4E-21 129.1 13.9 139 13-171 13-160 (435)
169 COG1160 Predicted GTPases [Gen 99.7 1.8E-16 4E-21 127.2 11.7 144 11-173 13-165 (444)
170 PF00009 GTP_EFTU: Elongation 99.7 1.6E-16 3.4E-21 117.0 10.2 155 14-173 16-187 (188)
171 PRK15467 ethanolamine utilizat 99.7 7.8E-17 1.7E-21 115.5 7.9 106 60-176 41-150 (158)
172 PRK05433 GTP-binding protein L 99.7 6E-16 1.3E-20 131.5 14.1 112 54-175 72-186 (600)
173 cd01895 EngA2 EngA2 subfamily. 99.7 1.7E-15 3.7E-20 109.1 14.6 146 14-171 15-173 (174)
174 PRK04213 GTP-binding protein; 99.7 8.3E-16 1.8E-20 114.2 13.0 147 14-176 22-195 (201)
175 TIGR03594 GTPase_EngA ribosome 99.7 9.2E-16 2E-20 126.4 14.4 142 13-174 11-161 (429)
176 PRK12298 obgE GTPase CgtA; Rev 99.7 6.7E-16 1.4E-20 125.0 12.9 151 14-175 172-335 (390)
177 PRK11058 GTPase HflX; Provisio 99.7 1.9E-15 4.2E-20 123.6 15.0 145 14-175 210-364 (426)
178 TIGR00475 selB selenocysteine- 99.7 6.5E-16 1.4E-20 131.0 12.6 150 14-176 13-169 (581)
179 COG1100 GTPase SAR1 and relate 99.7 2.4E-15 5.3E-20 113.0 14.4 148 20-176 20-188 (219)
180 cd04105 SR_beta Signal recogni 99.7 3.4E-15 7.3E-20 111.2 14.5 117 54-170 46-202 (203)
181 TIGR00437 feoB ferrous iron tr 99.7 6.8E-16 1.5E-20 131.0 11.3 139 14-172 7-154 (591)
182 TIGR00487 IF-2 translation ini 99.7 2.3E-15 5E-20 127.4 14.2 121 44-170 122-247 (587)
183 cd00880 Era_like Era (E. coli 99.7 3.5E-15 7.5E-20 105.5 13.0 146 14-171 9-162 (163)
184 PRK09518 bifunctional cytidyla 99.7 2.6E-15 5.6E-20 130.4 14.3 149 14-174 463-622 (712)
185 PRK09518 bifunctional cytidyla 99.7 1.2E-15 2.6E-20 132.4 12.2 143 13-174 287-437 (712)
186 CHL00189 infB translation init 99.6 3.9E-15 8.4E-20 128.0 14.7 113 54-172 293-409 (742)
187 PRK00093 GTP-binding protein D 99.6 1.7E-15 3.6E-20 125.1 11.9 150 14-175 186-346 (435)
188 PRK05306 infB translation init 99.6 4.1E-15 9E-20 128.8 13.6 120 46-171 327-450 (787)
189 TIGR00483 EF-1_alpha translati 99.6 1.5E-15 3.2E-20 125.0 10.2 122 41-165 70-199 (426)
190 PRK00089 era GTPase Era; Revie 99.6 3E-15 6.6E-20 117.4 11.3 145 14-174 18-172 (292)
191 TIGR00491 aIF-2 translation in 99.6 5.3E-15 1.1E-19 125.0 13.4 107 57-172 70-215 (590)
192 PRK12317 elongation factor 1-a 99.6 2.4E-15 5.2E-20 123.8 10.9 151 14-166 19-198 (425)
193 COG0486 ThdF Predicted GTPase 99.6 6.2E-15 1.3E-19 118.7 12.9 142 12-175 228-378 (454)
194 COG1159 Era GTPase [General fu 99.6 5.6E-15 1.2E-19 112.9 11.2 149 12-175 17-174 (298)
195 cd04163 Era Era subfamily. Er 99.6 1.1E-14 2.4E-19 104.0 11.3 143 14-171 16-167 (168)
196 KOG3883 Ras family small GTPas 99.6 3.5E-14 7.7E-19 98.0 12.8 157 15-180 19-182 (198)
197 PRK10512 selenocysteinyl-tRNA- 99.6 1.1E-14 2.3E-19 124.1 12.5 146 14-173 13-166 (614)
198 TIGR01394 TypA_BipA GTP-bindin 99.6 2E-14 4.4E-19 121.9 13.9 157 14-175 14-193 (594)
199 KOG1489 Predicted GTP-binding 99.6 1.6E-14 3.5E-19 110.9 12.0 140 20-170 211-364 (366)
200 cd01896 DRG The developmentall 99.6 3.3E-14 7.2E-19 108.0 13.7 141 14-172 13-225 (233)
201 cd01883 EF1_alpha Eukaryotic e 99.6 6.8E-15 1.5E-19 110.9 9.5 120 41-163 62-195 (219)
202 cd04168 TetM_like Tet(M)-like 99.6 6.8E-14 1.5E-18 106.5 14.8 155 14-173 12-235 (237)
203 PRK00454 engB GTP-binding prot 99.6 2.2E-14 4.7E-19 106.0 11.4 109 55-173 69-194 (196)
204 TIGR03680 eif2g_arch translati 99.6 1.1E-14 2.4E-19 119.1 10.5 114 55-173 79-196 (406)
205 PF08477 Miro: Miro-like prote 99.6 3E-15 6.4E-20 102.0 5.6 105 14-124 12-119 (119)
206 PRK04004 translation initiatio 99.6 3.7E-14 8.1E-19 120.2 12.6 106 58-171 73-216 (586)
207 COG1160 Predicted GTPases [Gen 99.6 5.3E-14 1.1E-18 113.1 12.7 152 12-175 189-353 (444)
208 KOG0077 Vesicle coat complex C 99.6 1.3E-14 2.8E-19 101.4 7.5 144 20-170 35-190 (193)
209 KOG1673 Ras GTPases [General f 99.6 7.6E-15 1.6E-19 101.5 5.9 141 29-176 38-189 (205)
210 PRK10218 GTP-binding protein; 99.6 1.3E-13 2.7E-18 117.1 14.4 157 14-175 18-197 (607)
211 cd04166 CysN_ATPS CysN_ATPS su 99.6 1E-13 2.3E-18 103.6 12.5 117 42-164 63-185 (208)
212 TIGR03598 GTPase_YsxC ribosome 99.6 3.2E-14 7E-19 103.9 9.4 132 14-162 31-179 (179)
213 PRK04000 translation initiatio 99.5 5.4E-14 1.2E-18 115.0 11.4 113 56-174 85-202 (411)
214 PRK09554 feoB ferrous iron tra 99.5 3.4E-14 7.4E-19 123.5 10.7 139 14-172 16-167 (772)
215 KOG0462 Elongation factor-type 99.5 1.1E-13 2.4E-18 112.9 11.6 116 53-175 122-237 (650)
216 cd01884 EF_Tu EF-Tu subfamily. 99.5 2.7E-13 5.9E-18 100.3 12.7 144 14-162 15-172 (195)
217 smart00275 G_alpha G protein a 99.5 7.5E-13 1.6E-17 105.7 14.4 137 39-175 167-336 (342)
218 COG0218 Predicted GTPase [Gene 99.5 4.1E-13 9E-18 97.6 11.4 145 12-174 35-198 (200)
219 cd00066 G-alpha G protein alph 99.5 7.8E-13 1.7E-17 104.8 12.9 136 40-175 145-313 (317)
220 COG0536 Obg Predicted GTPase [ 99.4 2E-12 4.3E-17 100.5 12.3 151 19-176 173-336 (369)
221 COG1084 Predicted GTPase [Gene 99.4 4.5E-12 9.8E-17 98.1 13.7 143 20-173 183-336 (346)
222 cd04169 RF3 RF3 subfamily. Pe 99.4 3.1E-12 6.7E-17 99.0 12.9 121 14-139 15-152 (267)
223 PRK13351 elongation factor G; 99.4 2.8E-12 6.2E-17 111.3 14.1 109 14-127 21-139 (687)
224 PRK00741 prfC peptide chain re 99.4 2.1E-12 4.5E-17 108.4 12.6 81 43-128 66-146 (526)
225 PRK12736 elongation factor Tu; 99.4 1.9E-12 4.1E-17 105.6 11.9 128 41-173 60-201 (394)
226 COG0481 LepA Membrane GTPase L 99.4 5E-13 1.1E-17 107.7 8.0 113 54-176 74-189 (603)
227 PLN00043 elongation factor 1-a 99.4 2.4E-12 5.3E-17 106.2 12.3 118 41-163 70-203 (447)
228 COG0532 InfB Translation initi 99.4 6.9E-12 1.5E-16 102.6 14.6 148 14-173 18-170 (509)
229 COG2262 HflX GTPases [General 99.4 4.1E-12 8.8E-17 101.0 12.8 146 14-177 205-360 (411)
230 TIGR00485 EF-Tu translation el 99.4 3.9E-12 8.6E-17 103.7 12.6 141 14-159 25-179 (394)
231 KOG0090 Signal recognition par 99.4 4E-12 8.7E-17 92.7 10.7 130 41-171 67-237 (238)
232 PRK14845 translation initiatio 99.4 9.4E-12 2E-16 110.6 15.2 108 58-173 528-673 (1049)
233 cd04170 EF-G_bact Elongation f 99.4 1.8E-11 4E-16 94.9 14.9 108 14-126 12-129 (268)
234 cd01885 EF2 EF2 (for archaea a 99.4 7.7E-12 1.7E-16 94.2 12.3 67 55-126 72-138 (222)
235 TIGR00157 ribosome small subun 99.4 1.2E-12 2.7E-17 100.0 7.8 95 67-170 24-120 (245)
236 CHL00071 tufA elongation facto 99.4 8.8E-12 1.9E-16 102.1 12.8 143 14-161 25-181 (409)
237 PRK12735 elongation factor Tu; 99.4 6.6E-12 1.4E-16 102.4 11.9 155 14-173 25-203 (396)
238 cd01899 Ygr210 Ygr210 subfamil 99.4 4.7E-12 1E-16 100.0 10.6 153 13-175 10-271 (318)
239 cd01886 EF-G Elongation factor 99.4 2.9E-11 6.3E-16 93.7 14.7 121 14-139 12-145 (270)
240 PRK12740 elongation factor G; 99.4 1.3E-11 2.9E-16 106.9 14.1 109 14-127 8-126 (668)
241 PLN03126 Elongation factor Tu; 99.4 1.4E-11 3.1E-16 102.3 13.6 142 14-160 94-249 (478)
242 cd01876 YihA_EngB The YihA (En 99.4 7.2E-12 1.6E-16 89.6 10.5 105 57-171 46-169 (170)
243 cd04167 Snu114p Snu114p subfam 99.4 4.5E-12 9.8E-17 95.1 9.7 68 54-126 69-136 (213)
244 KOG4423 GTP-binding protein-li 99.4 1.6E-13 3.4E-18 97.8 1.6 135 36-175 50-196 (229)
245 TIGR02034 CysN sulfate adenyly 99.4 8.8E-12 1.9E-16 102.0 12.1 120 41-164 65-188 (406)
246 TIGR00484 EF-G translation elo 99.4 3.6E-11 7.8E-16 104.5 15.9 110 13-127 22-141 (689)
247 PF10662 PduV-EutP: Ethanolami 99.3 1E-11 2.2E-16 86.4 9.1 98 59-169 39-142 (143)
248 COG1163 DRG Predicted GTPase [ 99.3 3.5E-11 7.5E-16 93.1 12.4 145 16-174 74-290 (365)
249 PF04670 Gtr1_RagA: Gtr1/RagA 99.3 5.9E-12 1.3E-16 95.0 7.9 138 34-174 25-177 (232)
250 PRK05124 cysN sulfate adenylyl 99.3 1.9E-11 4.1E-16 101.7 11.6 121 41-165 92-217 (474)
251 COG0370 FeoB Fe2+ transport sy 99.3 4.6E-11 1E-15 100.5 13.8 141 13-176 15-167 (653)
252 cd04165 GTPBP1_like GTPBP1-lik 99.3 5.9E-11 1.3E-15 89.7 13.2 114 52-170 80-220 (224)
253 PTZ00141 elongation factor 1- 99.3 1.6E-11 3.5E-16 101.4 10.8 119 41-163 70-203 (446)
254 TIGR00503 prfC peptide chain r 99.3 4.8E-11 1E-15 100.3 13.3 79 44-127 68-146 (527)
255 KOG1423 Ras-like GTPase ERA [C 99.3 2.1E-11 4.5E-16 93.6 9.8 152 11-173 82-271 (379)
256 PRK05506 bifunctional sulfate 99.3 2.6E-11 5.7E-16 104.4 11.5 146 14-163 37-211 (632)
257 PTZ00327 eukaryotic translatio 99.3 2.6E-11 5.6E-16 100.1 10.7 113 56-174 117-234 (460)
258 PRK00049 elongation factor Tu; 99.3 7.5E-11 1.6E-15 96.3 12.6 154 14-172 25-202 (396)
259 KOG1145 Mitochondrial translat 99.3 1.1E-10 2.5E-15 95.6 13.0 113 54-172 199-315 (683)
260 PLN03127 Elongation factor Tu; 99.3 1.3E-10 2.8E-15 96.1 13.5 128 41-173 109-252 (447)
261 PRK12739 elongation factor G; 99.2 4.3E-10 9.2E-15 97.8 14.3 110 13-127 20-139 (691)
262 KOG0082 G-protein alpha subuni 99.2 3.5E-10 7.7E-15 89.4 12.4 138 39-176 178-347 (354)
263 PF09439 SRPRB: Signal recogni 99.2 4.2E-12 9.2E-17 92.0 1.2 85 55-139 48-138 (181)
264 cd01859 MJ1464 MJ1464. This f 99.2 2E-10 4.2E-15 82.0 8.3 96 69-174 2-97 (156)
265 PRK09866 hypothetical protein; 99.2 7.5E-10 1.6E-14 93.3 12.8 127 41-170 212-350 (741)
266 cd04104 p47_IIGP_like p47 (47- 99.1 2.8E-10 6E-15 84.4 8.3 118 56-181 52-192 (197)
267 PRK13768 GTPase; Provisional 99.1 4.3E-10 9.4E-15 86.5 9.2 117 56-174 97-248 (253)
268 PRK00007 elongation factor G; 99.1 2.7E-09 5.8E-14 92.9 14.4 110 13-127 22-141 (693)
269 PRK09602 translation-associate 99.1 1.4E-09 3E-14 88.5 11.4 73 14-90 14-113 (396)
270 cd01855 YqeH YqeH. YqeH is an 99.1 9.9E-10 2.2E-14 80.9 8.9 98 69-173 24-125 (190)
271 COG1217 TypA Predicted membran 99.1 2.1E-09 4.6E-14 86.9 10.9 120 50-174 62-196 (603)
272 KOG1490 GTP-binding protein CR 99.1 3.3E-10 7.2E-15 92.1 6.2 155 21-185 184-353 (620)
273 COG4108 PrfC Peptide chain rel 99.0 2.5E-09 5.4E-14 85.9 10.6 75 48-127 73-147 (528)
274 PRK12289 GTPase RsgA; Reviewed 99.0 1.8E-09 3.9E-14 86.5 9.0 90 73-171 83-173 (352)
275 COG5256 TEF1 Translation elong 99.0 1.6E-09 3.4E-14 86.6 8.4 120 41-164 70-202 (428)
276 KOG1191 Mitochondrial GTPase [ 99.0 5.1E-09 1.1E-13 85.2 11.4 154 12-174 279-451 (531)
277 COG3276 SelB Selenocysteine-sp 99.0 4.4E-09 9.5E-14 84.6 10.2 151 13-173 12-162 (447)
278 COG2895 CysN GTPases - Sulfate 99.0 1.4E-09 3E-14 85.2 6.9 116 40-163 70-193 (431)
279 PF01926 MMR_HSR1: 50S ribosom 99.0 7.2E-09 1.6E-13 70.1 9.7 96 14-122 12-116 (116)
280 cd01852 AIG1 AIG1 (avrRpt2-ind 99.0 8.4E-09 1.8E-13 76.4 10.7 149 14-175 13-186 (196)
281 cd01854 YjeQ_engC YjeQ/EngC. 99.0 2.5E-09 5.4E-14 83.8 8.0 88 74-170 73-161 (287)
282 TIGR00490 aEF-2 translation el 98.9 9.7E-09 2.1E-13 89.8 9.8 83 40-127 66-152 (720)
283 PF00503 G-alpha: G-protein al 98.9 7.6E-09 1.6E-13 84.4 7.8 132 40-171 219-388 (389)
284 PRK00098 GTPase RsgA; Reviewed 98.9 6.1E-09 1.3E-13 82.0 6.9 86 76-170 77-164 (298)
285 PRK12288 GTPase RsgA; Reviewed 98.9 2.2E-08 4.9E-13 80.2 9.9 89 77-171 118-206 (347)
286 cd01856 YlqF YlqF. Proteins o 98.9 8.7E-09 1.9E-13 74.7 6.9 98 64-173 3-101 (171)
287 COG5257 GCD11 Translation init 98.8 1.4E-08 3E-13 78.8 7.9 116 56-176 86-205 (415)
288 KOG1707 Predicted Ras related/ 98.8 8.1E-09 1.8E-13 85.5 6.8 117 54-174 54-176 (625)
289 cd01850 CDC_Septin CDC/Septin. 98.8 1E-08 2.2E-13 79.8 6.6 132 13-155 16-184 (276)
290 COG3596 Predicted GTPase [Gene 98.8 1.4E-08 3.1E-13 77.3 7.0 153 14-176 52-225 (296)
291 cd01858 NGP_1 NGP-1. Autoanti 98.8 4.5E-08 9.9E-13 69.9 8.7 88 76-172 5-94 (157)
292 TIGR03597 GTPase_YqeH ribosome 98.8 2.4E-08 5.1E-13 80.7 7.3 98 66-171 50-151 (360)
293 TIGR03596 GTPase_YlqF ribosome 98.8 3.2E-08 6.8E-13 77.2 7.5 100 64-175 5-105 (276)
294 cd01849 YlqF_related_GTPase Yl 98.8 3.7E-08 7.9E-13 70.2 7.3 82 81-172 1-84 (155)
295 KOG1144 Translation initiation 98.7 5.8E-08 1.3E-12 82.5 9.1 112 57-176 541-690 (1064)
296 COG4917 EutP Ethanolamine util 98.7 3.3E-08 7.2E-13 66.5 5.3 127 13-170 13-143 (148)
297 PLN00116 translation elongatio 98.7 1.2E-07 2.6E-12 84.2 10.1 67 55-126 97-163 (843)
298 cd01857 HSR1_MMR1 HSR1/MMR1. 98.7 6.2E-08 1.4E-12 67.9 6.6 78 73-160 5-84 (141)
299 PRK09563 rbgA GTPase YlqF; Rev 98.6 7.8E-08 1.7E-12 75.4 6.9 101 63-175 7-108 (287)
300 PTZ00416 elongation factor 2; 98.6 1.9E-07 4.1E-12 82.9 9.3 67 55-126 91-157 (836)
301 PTZ00258 GTP-binding protein; 98.6 4.9E-07 1.1E-11 73.3 10.3 73 14-90 34-126 (390)
302 KOG3887 Predicted small GTPase 98.6 2.9E-07 6.3E-12 69.0 8.1 132 41-175 60-204 (347)
303 PRK07560 elongation factor EF- 98.6 3.2E-07 7E-12 80.5 9.4 69 54-127 85-153 (731)
304 KOG0099 G protein subunit Galp 98.6 6.4E-07 1.4E-11 67.9 9.0 133 42-174 188-370 (379)
305 TIGR02836 spore_IV_A stage IV 98.5 2E-06 4.4E-11 69.6 11.5 147 13-168 29-232 (492)
306 KOG0458 Elongation factor 1 al 98.5 6.5E-07 1.4E-11 74.4 9.0 113 48-164 247-373 (603)
307 cd01882 BMS1 Bms1. Bms1 is an 98.5 1.9E-06 4.1E-11 65.2 10.7 129 13-160 51-183 (225)
308 KOG0085 G protein subunit Galp 98.5 2.1E-07 4.6E-12 69.4 5.3 136 40-175 183-351 (359)
309 COG0012 Predicted GTPase, prob 98.5 1.2E-06 2.7E-11 69.6 9.5 75 12-90 13-108 (372)
310 PF03029 ATP_bind_1: Conserved 98.5 3.6E-07 7.8E-12 69.6 6.1 112 57-172 92-236 (238)
311 KOG1486 GTP-binding protein DR 98.4 2.5E-06 5.3E-11 64.5 9.6 143 19-175 76-290 (364)
312 TIGR00101 ureG urease accessor 98.4 1E-06 2.2E-11 65.4 7.5 103 55-172 91-195 (199)
313 KOG0461 Selenocysteine-specifi 98.4 2.8E-06 6.1E-11 66.9 10.2 118 54-177 68-197 (522)
314 COG0050 TufB GTPases - transla 98.4 1.9E-06 4.1E-11 66.5 8.3 112 41-157 60-177 (394)
315 PRK09435 membrane ATPase/prote 98.4 3.1E-06 6.7E-11 67.4 9.4 110 54-175 147-262 (332)
316 PRK13796 GTPase YqeH; Provisio 98.3 3.1E-06 6.7E-11 68.6 8.4 95 68-171 58-157 (365)
317 TIGR00750 lao LAO/AO transport 98.3 7.3E-06 1.6E-10 64.7 10.2 108 54-173 125-238 (300)
318 COG0480 FusA Translation elong 98.3 5.3E-06 1.2E-10 71.9 10.0 80 43-127 62-142 (697)
319 PRK09601 GTP-binding protein Y 98.3 9.1E-06 2E-10 65.3 10.3 74 13-90 14-107 (364)
320 TIGR00991 3a0901s02IAP34 GTP-b 98.3 1.5E-05 3.2E-10 62.7 10.7 106 13-126 50-166 (313)
321 PRK01889 GTPase RsgA; Reviewed 98.3 8.5E-06 1.8E-10 65.8 9.7 84 77-169 110-193 (356)
322 KOG1707 Predicted Ras related/ 98.2 2.1E-05 4.6E-10 65.7 10.3 144 12-174 436-584 (625)
323 KOG0410 Predicted GTP binding 98.1 5.2E-06 1.1E-10 64.9 5.7 141 14-177 191-345 (410)
324 cd01853 Toc34_like Toc34-like 98.1 4.7E-05 1E-09 58.5 10.7 106 14-127 44-163 (249)
325 KOG3886 GTP-binding protein [S 98.1 1.4E-05 3E-10 59.8 7.2 118 38-157 34-163 (295)
326 smart00010 small_GTPase Small 98.1 1.1E-05 2.5E-10 54.5 6.5 75 72-162 39-115 (124)
327 TIGR00073 hypB hydrogenase acc 98.1 1E-05 2.3E-10 60.4 6.7 102 55-171 102-205 (207)
328 KOG1532 GTPase XAB1, interacts 98.1 4.7E-05 1E-09 58.4 9.6 116 55-173 115-264 (366)
329 PF04548 AIG1: AIG1 family; I 98.1 2E-05 4.3E-10 59.1 7.5 150 14-176 13-189 (212)
330 KOG0466 Translation initiation 98.0 4.3E-06 9.4E-11 64.8 3.6 115 56-175 125-243 (466)
331 KOG0468 U5 snRNP-specific prot 98.0 1.3E-05 2.8E-10 68.0 6.3 70 52-126 193-262 (971)
332 PF05049 IIGP: Interferon-indu 98.0 5.9E-05 1.3E-09 60.8 9.2 118 57-181 87-226 (376)
333 PF06858 NOG1: Nucleolar GTP-b 98.0 3.6E-05 7.8E-10 44.8 5.7 43 80-124 14-58 (58)
334 PF05783 DLIC: Dynein light in 97.9 0.00016 3.4E-09 60.3 11.1 143 20-176 40-267 (472)
335 KOG3905 Dynein light intermedi 97.9 0.00033 7.2E-09 55.1 10.9 142 20-175 67-292 (473)
336 COG5258 GTPBP1 GTPase [General 97.7 0.00039 8.5E-09 55.9 9.9 107 55-166 200-332 (527)
337 KOG1487 GTP-binding protein DR 97.7 6.1E-05 1.3E-09 57.4 4.7 147 13-173 67-281 (358)
338 KOG0460 Mitochondrial translat 97.7 0.00011 2.3E-09 58.1 6.1 102 51-156 112-218 (449)
339 COG1162 Predicted GTPases [Gen 97.7 0.00047 1E-08 53.9 9.2 87 76-171 76-165 (301)
340 cd01900 YchF YchF subfamily. 97.7 0.00011 2.5E-09 57.1 5.7 73 14-90 11-103 (274)
341 KOG0464 Elongation factor G [T 97.6 1.9E-05 4.1E-10 63.8 1.1 85 50-139 96-183 (753)
342 KOG0465 Mitochondrial elongati 97.6 0.00034 7.4E-09 59.0 7.7 81 51-136 99-179 (721)
343 KOG1954 Endocytosis/signaling 97.6 0.00064 1.4E-08 54.4 8.7 73 57-136 148-231 (532)
344 PF00350 Dynamin_N: Dynamin fa 97.5 0.00018 3.9E-09 51.5 5.3 64 56-123 101-168 (168)
345 PF03308 ArgK: ArgK protein; 97.5 6E-05 1.3E-09 57.5 2.6 106 54-173 120-230 (266)
346 COG1703 ArgK Putative periplas 97.5 0.00078 1.7E-08 52.5 7.9 109 54-174 142-255 (323)
347 KOG0467 Translation elongation 97.5 0.00049 1.1E-08 59.5 7.3 68 53-125 69-136 (887)
348 KOG2486 Predicted GTPase [Gene 97.4 0.00026 5.7E-09 54.4 5.1 145 12-169 147-312 (320)
349 KOG0705 GTPase-activating prot 97.4 0.001 2.2E-08 55.7 8.7 123 51-182 72-198 (749)
350 cd04178 Nucleostemin_like Nucl 97.4 0.00027 5.9E-09 51.2 4.8 43 81-127 1-44 (172)
351 COG1161 Predicted GTPases [Gen 97.4 0.00041 8.9E-09 55.3 6.2 97 62-169 16-113 (322)
352 PF00735 Septin: Septin; Inte 97.4 0.00046 1E-08 54.0 6.1 109 13-127 16-156 (281)
353 smart00053 DYNc Dynamin, GTPas 97.4 0.0014 3E-08 50.0 8.5 78 56-139 125-216 (240)
354 TIGR00993 3a0901s04IAP86 chlor 97.4 0.003 6.5E-08 54.6 10.9 108 13-127 130-250 (763)
355 COG5019 CDC3 Septin family pro 97.4 0.0015 3.2E-08 52.2 8.4 109 13-127 35-176 (373)
356 KOG0459 Polypeptide release fa 97.3 0.00039 8.3E-09 56.1 5.2 122 41-166 142-279 (501)
357 KOG2484 GTPase [General functi 97.1 0.0006 1.3E-08 54.9 4.3 75 60-139 127-203 (435)
358 COG0378 HypB Ni2+-binding GTPa 97.1 0.00047 1E-08 50.4 3.1 101 56-172 97-200 (202)
359 KOG1424 Predicted GTP-binding 97.1 0.0012 2.6E-08 54.8 5.7 77 70-157 166-244 (562)
360 PRK10463 hydrogenase nickel in 97.0 0.00076 1.6E-08 52.7 3.9 56 113-171 230-287 (290)
361 cd03110 Fer4_NifH_child This p 97.0 0.0099 2.2E-07 43.1 9.4 78 54-139 91-168 (179)
362 KOG1547 Septin CDC10 and relat 96.9 0.014 3.1E-07 44.3 9.3 137 13-157 58-227 (336)
363 KOG2655 Septin family protein 96.9 0.017 3.8E-07 46.4 10.4 109 12-127 32-172 (366)
364 TIGR00092 GTP-binding protein 96.8 0.0039 8.4E-08 50.5 6.5 75 13-90 14-108 (368)
365 KOG0447 Dynamin-like GTP bindi 96.8 0.044 9.6E-07 46.4 12.6 100 51-153 406-521 (980)
366 KOG1143 Predicted translation 96.7 0.012 2.5E-07 47.5 7.8 108 56-168 249-383 (591)
367 KOG0469 Elongation factor 2 [T 96.5 0.0048 1E-07 51.5 5.1 81 54-139 96-179 (842)
368 KOG1491 Predicted GTP-binding 96.0 0.011 2.4E-07 46.9 4.4 76 11-90 30-125 (391)
369 KOG2423 Nucleolar GTPase [Gene 95.7 0.092 2E-06 42.9 8.3 63 73-138 207-269 (572)
370 TIGR00064 ftsY signal recognit 95.7 0.13 2.9E-06 40.0 9.3 96 54-165 153-260 (272)
371 cd02038 FleN-like FleN is a me 95.4 0.1 2.2E-06 36.3 6.9 66 56-126 45-110 (139)
372 KOG0463 GTP-binding protein GP 95.3 0.06 1.3E-06 43.6 6.2 114 49-167 211-352 (641)
373 PRK10416 signal recognition pa 95.3 0.1 2.2E-06 41.7 7.6 96 54-165 195-302 (318)
374 cd02036 MinD Bacterial cell di 95.0 0.25 5.4E-06 35.4 8.4 65 57-127 64-128 (179)
375 COG5192 BMS1 GTP-binding prote 94.8 0.34 7.3E-06 41.5 9.5 126 13-157 81-210 (1077)
376 KOG2485 Conserved ATP/GTP bind 94.7 0.058 1.2E-06 42.5 4.6 103 60-173 26-131 (335)
377 PRK12288 GTPase RsgA; Reviewed 94.7 0.028 6E-07 45.4 3.0 55 13-70 217-271 (347)
378 cd03111 CpaE_like This protein 94.7 0.26 5.6E-06 32.5 7.1 63 57-122 44-106 (106)
379 PRK14974 cell division protein 94.7 0.32 7E-06 39.1 8.9 96 55-166 222-323 (336)
380 cd01857 HSR1_MMR1 HSR1/MMR1. 94.7 0.018 3.9E-07 40.1 1.6 44 13-66 95-138 (141)
381 COG3640 CooC CO dehydrogenase 94.6 0.085 1.8E-06 40.0 5.1 64 55-126 133-198 (255)
382 cd01858 NGP_1 NGP-1. Autoanti 94.6 0.014 3E-07 41.4 0.9 42 14-65 115-156 (157)
383 TIGR00157 ribosome small subun 94.5 0.057 1.2E-06 41.4 4.1 53 13-69 132-184 (245)
384 cd01851 GBP Guanylate-binding 94.3 0.16 3.4E-06 38.4 6.1 75 14-93 20-105 (224)
385 COG4963 CpaE Flp pilus assembl 94.2 0.39 8.5E-06 38.9 8.3 83 54-140 216-298 (366)
386 TIGR03348 VI_IcmF type VI secr 94.1 0.43 9.3E-06 44.8 9.5 70 57-127 162-257 (1169)
387 KOG3859 Septins (P-loop GTPase 93.8 0.11 2.5E-06 40.4 4.4 103 13-126 54-189 (406)
388 KOG0448 Mitofusin 1 GTPase, in 93.4 0.44 9.6E-06 41.5 7.7 66 57-127 207-275 (749)
389 COG1161 Predicted GTPases [Gen 93.4 0.047 1E-06 43.7 1.9 46 11-66 142-187 (322)
390 cd01855 YqeH YqeH. YqeH is an 93.4 0.099 2.1E-06 38.2 3.5 49 14-65 140-189 (190)
391 PHA02518 ParA-like protein; Pr 93.3 0.46 9.9E-06 35.1 7.0 68 54-126 75-146 (211)
392 PF09547 Spore_IV_A: Stage IV 93.3 1.2 2.6E-05 37.0 9.6 40 113-157 180-219 (492)
393 PF14331 ImcF-related_N: ImcF- 93.3 0.4 8.8E-06 37.3 6.9 89 79-176 25-134 (266)
394 cd01859 MJ1464 MJ1464. This f 93.2 0.042 9.2E-07 38.8 1.2 41 14-65 114-155 (156)
395 PRK12289 GTPase RsgA; Reviewed 93.0 0.086 1.9E-06 42.7 2.8 53 13-68 184-236 (352)
396 cd03114 ArgK-like The function 93.0 0.28 6E-06 34.6 5.1 58 55-124 91-148 (148)
397 COG1149 MinD superfamily P-loo 92.9 0.78 1.7E-05 35.6 7.6 73 56-139 164-236 (284)
398 PRK09563 rbgA GTPase YlqF; Rev 92.7 0.048 1E-06 42.8 1.0 44 14-67 134-177 (287)
399 PF11111 CENP-M: Centromere pr 92.6 1.2 2.6E-05 32.2 7.8 89 79-174 64-154 (176)
400 COG1162 Predicted GTPases [Gen 92.6 0.13 2.8E-06 40.5 3.2 54 14-70 177-230 (301)
401 cd01849 YlqF_related_GTPase Yl 92.6 0.093 2E-06 37.1 2.2 42 14-65 113-154 (155)
402 TIGR03596 GTPase_YlqF ribosome 92.5 0.066 1.4E-06 41.8 1.5 43 14-66 131-173 (276)
403 cd02037 MRP-like MRP (Multiple 92.0 1.4 3E-05 31.5 7.8 66 54-125 66-133 (169)
404 TIGR01007 eps_fam capsular exo 91.9 1.3 2.8E-05 32.6 7.8 67 55-126 127-193 (204)
405 cd03112 CobW_like The function 91.9 0.6 1.3E-05 33.2 5.8 64 55-125 86-158 (158)
406 PRK13849 putative crown gall t 91.9 0.86 1.9E-05 34.7 6.9 68 54-124 82-151 (231)
407 cd01854 YjeQ_engC YjeQ/EngC. 91.8 0.22 4.7E-06 39.2 3.6 53 14-69 174-226 (287)
408 TIGR03371 cellulose_yhjQ cellu 91.5 1.6 3.5E-05 33.0 8.1 67 57-127 116-182 (246)
409 cd01856 YlqF YlqF. Proteins o 90.2 0.19 4.1E-06 36.2 1.8 11 56-66 160-170 (171)
410 TIGR01968 minD_bact septum sit 90.1 1.5 3.2E-05 33.5 6.8 65 55-125 111-175 (261)
411 TIGR01969 minD_arch cell divis 90.1 1.9 4.2E-05 32.6 7.4 77 55-138 108-186 (251)
412 PF03193 DUF258: Protein of un 90.0 0.051 1.1E-06 38.9 -1.3 53 14-69 48-100 (161)
413 cd02042 ParA ParA and ParB of 90.0 2.1 4.6E-05 27.6 6.6 45 56-103 40-84 (104)
414 cd03115 SRP The signal recogni 89.8 2.4 5.2E-05 30.3 7.3 66 55-127 82-153 (173)
415 CHL00175 minD septum-site dete 89.8 1.7 3.6E-05 33.8 7.0 65 55-125 126-190 (281)
416 PRK00098 GTPase RsgA; Reviewed 89.7 0.28 6.1E-06 38.8 2.5 53 13-68 176-228 (298)
417 TIGR01425 SRP54_euk signal rec 89.6 2.1 4.5E-05 35.7 7.6 66 55-127 182-253 (429)
418 TIGR00959 ffh signal recogniti 89.1 2 4.4E-05 35.8 7.2 67 54-127 181-253 (428)
419 PRK13505 formate--tetrahydrofo 88.8 1.8 3.8E-05 37.1 6.7 57 112-173 371-429 (557)
420 PRK00771 signal recognition pa 88.8 4.9 0.00011 33.7 9.2 65 56-127 176-246 (437)
421 cd02032 Bchl_like This family 88.7 1.8 3.8E-05 33.5 6.3 69 55-125 115-184 (267)
422 KOG0780 Signal recognition par 88.3 2.6 5.7E-05 34.6 7.0 47 51-97 179-231 (483)
423 COG0523 Putative GTPases (G3E 88.2 3.7 8E-05 32.9 7.9 100 55-164 84-192 (323)
424 PRK13185 chlL protochlorophyll 87.4 1.9 4.1E-05 33.3 5.8 69 55-125 117-186 (270)
425 PRK13796 GTPase YqeH; Provisio 87.3 0.57 1.2E-05 38.2 2.9 50 13-67 172-221 (365)
426 KOG1424 Predicted GTP-binding 85.8 0.25 5.3E-06 41.6 0.1 45 11-65 324-368 (562)
427 KOG4273 Uncharacterized conser 85.8 1.5 3.2E-05 33.8 4.2 45 78-126 77-122 (418)
428 cd02117 NifH_like This family 85.7 3.7 8E-05 30.5 6.4 72 54-126 115-188 (212)
429 PRK10818 cell division inhibit 85.5 4.2 9.1E-05 31.4 6.8 115 55-175 113-249 (270)
430 TIGR03815 CpaE_hom_Actino heli 85.0 8.1 0.00017 30.8 8.4 77 55-139 204-280 (322)
431 PRK10867 signal recognition pa 84.9 4.3 9.2E-05 34.0 6.9 67 54-127 182-254 (433)
432 PF01656 CbiA: CobQ/CobB/MinD/ 83.6 3.1 6.7E-05 30.0 5.1 68 56-127 95-162 (195)
433 TIGR03597 GTPase_YqeH ribosome 83.1 1.2 2.6E-05 36.3 2.9 48 13-67 166-215 (360)
434 TIGR03029 EpsG chain length de 83.1 8.5 0.00019 29.7 7.6 62 55-122 212-274 (274)
435 CHL00072 chlL photochlorophyll 82.9 5.1 0.00011 31.6 6.3 116 55-175 115-246 (290)
436 PF07015 VirC1: VirC1 protein; 82.8 4.3 9.3E-05 30.9 5.6 101 55-166 83-187 (231)
437 TIGR01281 DPOR_bchL light-inde 81.2 4.5 9.7E-05 31.2 5.4 70 55-126 115-185 (268)
438 PF00448 SRP54: SRP54-type pro 80.5 7.5 0.00016 28.7 6.1 67 54-127 82-154 (196)
439 cd01983 Fer4_NifH The Fer4_Nif 80.3 11 0.00024 23.2 7.5 64 57-121 35-99 (99)
440 cd02035 ArsA ArsA ATPase funct 79.7 9.7 0.00021 28.4 6.7 68 55-126 113-183 (217)
441 PF10087 DUF2325: Uncharacteri 78.9 9.2 0.0002 24.6 5.5 44 69-119 38-81 (97)
442 COG3523 IcmF Type VI protein s 77.6 30 0.00065 32.9 10.1 70 57-127 175-270 (1188)
443 COG0541 Ffh Signal recognition 77.5 10 0.00023 31.6 6.5 40 54-93 181-226 (451)
444 KOG3929 Uncharacterized conser 76.5 3.1 6.6E-05 32.4 3.0 57 39-95 70-135 (363)
445 PRK11537 putative GTP-binding 76.0 14 0.0003 29.6 6.9 87 56-154 91-186 (318)
446 PRK12727 flagellar biosynthesi 75.7 15 0.00033 31.7 7.3 91 55-161 428-523 (559)
447 KOG1534 Putative transcription 73.9 13 0.00027 28.2 5.6 114 57-173 99-251 (273)
448 TIGR02475 CobW cobalamin biosy 73.9 13 0.00027 30.1 6.2 37 55-91 92-135 (341)
449 PF01268 FTHFS: Formate--tetra 73.7 7.4 0.00016 33.5 4.9 85 79-172 321-427 (557)
450 TIGR01005 eps_transp_fam exopo 73.2 17 0.00036 32.7 7.4 68 54-126 654-721 (754)
451 PRK06731 flhF flagellar biosyn 73.0 20 0.00043 28.0 6.9 66 55-127 154-225 (270)
452 TIGR00381 cdhD CO dehydrogenas 72.0 55 0.0012 27.0 10.1 40 79-121 153-196 (389)
453 PRK10037 cell division protein 70.2 32 0.00069 26.2 7.5 60 54-125 116-175 (250)
454 PRK13705 plasmid-partitioning 70.1 14 0.00029 30.5 5.6 70 55-127 234-308 (388)
455 PRK05703 flhF flagellar biosyn 70.0 36 0.00078 28.5 8.2 94 55-164 299-400 (424)
456 KOG2485 Conserved ATP/GTP bind 69.9 5.5 0.00012 31.8 3.1 50 11-66 153-206 (335)
457 cd02040 NifH NifH gene encodes 69.7 12 0.00025 28.7 5.0 68 55-123 116-185 (270)
458 PRK13869 plasmid-partitioning 68.7 34 0.00073 28.4 7.7 70 55-127 251-328 (405)
459 PF03193 DUF258: Protein of un 68.7 5.1 0.00011 28.7 2.6 23 147-169 12-34 (161)
460 KOG1249 Predicted GTPases [Gen 68.6 9.4 0.0002 32.7 4.4 91 75-172 106-210 (572)
461 PRK14722 flhF flagellar biosyn 68.4 22 0.00047 29.3 6.4 72 54-127 214-295 (374)
462 cd01886 EF-G Elongation factor 67.0 6.4 0.00014 30.7 3.0 29 145-173 240-268 (270)
463 cd00477 FTHFS Formyltetrahydro 66.3 9.3 0.0002 32.6 3.9 57 112-173 355-413 (524)
464 PRK12726 flagellar biosynthesi 64.3 31 0.00068 28.6 6.5 66 55-127 285-356 (407)
465 PRK13507 formate--tetrahydrofo 63.4 12 0.00025 32.4 4.0 57 112-173 400-458 (587)
466 TIGR03453 partition_RepA plasm 63.0 36 0.00078 27.9 6.8 70 55-127 234-311 (387)
467 PRK11889 flhF flagellar biosyn 62.6 34 0.00074 28.6 6.4 66 55-127 320-391 (436)
468 COG0552 FtsY Signal recognitio 61.8 33 0.00071 27.8 6.0 66 54-127 220-298 (340)
469 PRK01889 GTPase RsgA; Reviewed 61.5 6.1 0.00013 32.1 2.1 53 13-68 207-259 (356)
470 PF02492 cobW: CobW/HypB/UreG, 61.5 8 0.00017 27.9 2.5 68 55-128 84-156 (178)
471 PF08438 MMR_HSR1_C: GTPase of 59.9 3.6 7.7E-05 27.4 0.4 32 119-156 1-32 (109)
472 COG1908 FrhD Coenzyme F420-red 58.5 14 0.00031 25.1 3.0 43 135-177 84-126 (132)
473 PRK13506 formate--tetrahydrofo 57.7 19 0.00042 31.1 4.4 58 112-173 392-451 (578)
474 TIGR03018 pepcterm_TyrKin exop 57.7 74 0.0016 23.4 8.0 48 57-106 150-197 (207)
475 PRK13235 nifH nitrogenase redu 57.5 31 0.00068 26.6 5.4 70 54-124 116-187 (274)
476 PRK12723 flagellar biosynthesi 55.5 56 0.0012 27.1 6.7 67 54-127 253-326 (388)
477 PRK11670 antiporter inner memb 54.7 89 0.0019 25.6 7.7 67 55-126 215-282 (369)
478 PHA02519 plasmid partition pro 54.7 44 0.00096 27.6 6.0 69 55-126 234-307 (387)
479 PF09419 PGP_phosphatase: Mito 53.4 83 0.0018 22.7 8.1 68 95-169 61-128 (168)
480 TIGR01287 nifH nitrogenase iro 53.3 25 0.00055 27.1 4.3 68 55-123 115-184 (275)
481 KOG0052 Translation elongation 53.0 13 0.00028 30.5 2.6 76 50-127 76-156 (391)
482 cd04169 RF3 RF3 subfamily. Pe 52.3 14 0.0003 28.7 2.6 29 145-173 237-265 (267)
483 KOG2743 Cobalamin synthesis pr 52.1 89 0.0019 25.2 6.9 37 54-90 144-188 (391)
484 PRK12724 flagellar biosynthesi 51.3 78 0.0017 26.6 6.8 67 54-127 298-373 (432)
485 PRK11519 tyrosine kinase; Prov 51.1 1.1E+02 0.0023 27.7 8.2 67 54-126 634-701 (719)
486 PRK13660 hypothetical protein; 49.9 91 0.002 22.8 6.4 19 74-92 124-142 (182)
487 COG2759 MIS1 Formyltetrahydrof 49.5 54 0.0012 27.8 5.6 58 112-174 368-427 (554)
488 PRK09841 cryptic autophosphory 49.2 1.1E+02 0.0023 27.7 7.9 67 55-126 640-706 (726)
489 PLN02759 Formate--tetrahydrofo 49.1 50 0.0011 29.0 5.5 57 112-173 449-508 (637)
490 PRK13695 putative NTPase; Prov 49.1 94 0.002 22.0 8.7 79 75-173 92-173 (174)
491 PRK13233 nifH nitrogenase redu 48.8 26 0.00057 27.0 3.7 68 55-124 118-188 (275)
492 KOG2484 GTPase [General functi 48.0 11 0.00023 31.2 1.3 45 11-65 262-306 (435)
493 PRK13231 nitrogenase reductase 47.1 56 0.0012 25.0 5.3 66 55-124 113-179 (264)
494 COG1192 Soj ATPases involved i 46.3 95 0.0021 23.6 6.5 71 55-127 119-191 (259)
495 PRK14723 flhF flagellar biosyn 45.9 1.1E+02 0.0024 27.9 7.4 107 55-174 263-380 (767)
496 PF13651 EcoRI_methylase: Aden 45.5 96 0.0021 25.0 6.2 61 65-139 120-181 (336)
497 cd00550 ArsA_ATPase Oxyanion-t 45.5 1.2E+02 0.0025 23.3 6.8 68 54-126 123-202 (254)
498 COG0455 flhG Antiactivator of 45.2 1.5E+02 0.0032 23.1 7.3 64 56-124 113-177 (262)
499 COG4474 Uncharacterized protei 45.2 90 0.0019 22.6 5.5 35 73-107 123-157 (180)
500 PF14606 Lipase_GDSL_3: GDSL-l 45.1 1.2E+02 0.0026 22.1 7.0 62 57-120 35-100 (178)
No 1
>KOG0084 consensus GTPase Rab1/YPT1, small G protein superfamily, and related GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.98 E-value=9.6e-32 Score=191.76 Aligned_cols=147 Identities=27% Similarity=0.447 Sum_probs=133.5
Q ss_pred HHHHHHHhhhhccCCCCCCCCCCCCcceEEEE----EEecCEEEEEEeCCCCcccHHHHHHhhhcCCEEEEEEeCCCccc
Q 029517 19 HTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGR----IEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSR 94 (192)
Q Consensus 19 ~~l~~~~~~~~~~~~~~~~~~~~~T~g~~~~~----~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ii~v~D~~~~~s 94 (192)
-+|+.|++. +.|.+.|..|+|+++.. ++++.++++||||+||++|+.....|+++|+|||+|||+++.+|
T Consensus 23 tCL~~Rf~~------~~f~e~~~sTIGVDf~~rt~e~~gk~iKlQIWDTAGQERFrtit~syYR~ahGii~vyDiT~~~S 96 (205)
T KOG0084|consen 23 TCLLLRFKD------DTFTESYISTIGVDFKIRTVELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIFVYDITKQES 96 (205)
T ss_pred hhhhhhhcc------CCcchhhcceeeeEEEEEEeeecceEEEEEeeeccccHHHhhhhHhhccCCCeEEEEEEcccHHH
Confidence 378899998 99999999999999984 56678899999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhCCCCCCCcEEEEEeCCCCCC--CCCHHHHHhHcCccccCCcceE-EEEeeecCCCCHHHHHHHHHHH
Q 029517 95 FEDSKTALEKVLRNEDLQGAPLLILANKQDLPD--AVSADELARYLDLKKLDERVCM-FEAVSGYDGFGIKESVEWLVEV 171 (192)
Q Consensus 95 ~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~-~~~~Sa~~~~gi~e~~~~i~~~ 171 (192)
|..+..|+.++.+... .+.|.++||||+|+.+ .++.+++..++. ..+++ ++|+|||++.||+++|..|...
T Consensus 97 F~~v~~Wi~Ei~~~~~-~~v~~lLVGNK~Dl~~~~~v~~~~a~~fa~-----~~~~~~f~ETSAK~~~NVe~~F~~la~~ 170 (205)
T KOG0084|consen 97 FNNVKRWIQEIDRYAS-ENVPKLLVGNKCDLTEKRVVSTEEAQEFAD-----ELGIPIFLETSAKDSTNVEDAFLTLAKE 170 (205)
T ss_pred hhhHHHHHHHhhhhcc-CCCCeEEEeeccccHhheecCHHHHHHHHH-----hcCCcceeecccCCccCHHHHHHHHHHH
Confidence 9999999999988754 5689999999999987 788899988887 66777 9999999999999999999998
Q ss_pred HHhcch
Q 029517 172 MERSKR 177 (192)
Q Consensus 172 i~~~~~ 177 (192)
+.....
T Consensus 171 lk~~~~ 176 (205)
T KOG0084|consen 171 LKQRKG 176 (205)
T ss_pred HHHhcc
Confidence 876653
No 2
>PLN00223 ADP-ribosylation factor; Provisional
Probab=99.97 E-value=2e-29 Score=184.65 Aligned_cols=167 Identities=33% Similarity=0.646 Sum_probs=137.6
Q ss_pred ChhhhHHHHhhhhccccHH------------HHHHHHhhhhccCCCCCCCCCCCCcceEEEEEEecCEEEEEEeCCCCcc
Q 029517 1 MFSLFYGLWKYIFTKTEFH------------TLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPG 68 (192)
Q Consensus 1 ~~~~~~~~~~~~~kst~~~------------~l~~~~~~~~~~~~~~~~~~~~~T~g~~~~~~~~~~~~~~i~D~~G~~~ 68 (192)
|+++++.+++..+....++ +|++++.. +.+. .+.||+|.++..++...+.+++||+||+++
T Consensus 1 m~~~~~~~~~~~~~~~~~ki~ivG~~~~GKTsl~~~l~~------~~~~-~~~pt~g~~~~~~~~~~~~~~i~D~~Gq~~ 73 (181)
T PLN00223 1 MGLSFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKL------GEIV-TTIPTIGFNVETVEYKNISFTVWDVGGQDK 73 (181)
T ss_pred CchHHHHHHHHhcCCCccEEEEECCCCCCHHHHHHHHcc------CCCc-cccCCcceeEEEEEECCEEEEEEECCCCHH
Confidence 8888888887765433333 77777764 4443 468999999888888899999999999999
Q ss_pred cHHHHHHhhhcCCEEEEEEeCCCcccHHHHHHHHHHHHhCCCCCCCcEEEEEeCCCCCCCCCHHHHHhHcCccccCCcce
Q 029517 69 LRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAVSADELARYLDLKKLDERVC 148 (192)
Q Consensus 69 ~~~~~~~~~~~~d~ii~v~D~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~ 148 (192)
++..|..+++++|++|+|+|+++.++++++..++..+.......++|+++++||+|+....+.+++.+.+.+.....+.+
T Consensus 74 ~~~~~~~~~~~a~~iI~V~D~s~~~s~~~~~~~l~~~l~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~l~l~~~~~~~~ 153 (181)
T PLN00223 74 IRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHW 153 (181)
T ss_pred HHHHHHHHhccCCEEEEEEeCCcHHHHHHHHHHHHHHhcCHhhCCCCEEEEEECCCCCCCCCHHHHHHHhCccccCCCce
Confidence 99999999999999999999999999999988888887643335799999999999988778888888777544434556
Q ss_pred EEEEeeecCCCCHHHHHHHHHHHHHh
Q 029517 149 MFEAVSGYDGFGIKESVEWLVEVMER 174 (192)
Q Consensus 149 ~~~~~Sa~~~~gi~e~~~~i~~~i~~ 174 (192)
.++++||++|+||+++|+||.+.+.+
T Consensus 154 ~~~~~Sa~~g~gv~e~~~~l~~~~~~ 179 (181)
T PLN00223 154 YIQSTCATSGEGLYEGLDWLSNNIAN 179 (181)
T ss_pred EEEeccCCCCCCHHHHHHHHHHHHhh
Confidence 78899999999999999999887654
No 3
>KOG0092 consensus GTPase Rab5/YPT51 and related small G protein superfamily GTPases [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=6.2e-30 Score=181.84 Aligned_cols=149 Identities=24% Similarity=0.364 Sum_probs=131.4
Q ss_pred HHHHHHhhhhccCCCCCCCCCCCCcceEEEE--EEe--cCEEEEEEeCCCCcccHHHHHHhhhcCCEEEEEEeCCCcccH
Q 029517 20 TLLEKLKSVYSNVEGLPPDRIVPTVGLNIGR--IEV--SNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRF 95 (192)
Q Consensus 20 ~l~~~~~~~~~~~~~~~~~~~~~T~g~~~~~--~~~--~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ii~v~D~~~~~s~ 95 (192)
+|+-|... +.|.+...||||..+.. +.. ..+++.||||+|+++|..+.+.|+|+++++|+|||+++.+||
T Consensus 20 SlV~Rfvk------~~F~e~~e~TIGaaF~tktv~~~~~~ikfeIWDTAGQERy~slapMYyRgA~AAivvYDit~~~SF 93 (200)
T KOG0092|consen 20 SLVLRFVK------DQFHENIEPTIGAAFLTKTVTVDDNTIKFEIWDTAGQERYHSLAPMYYRGANAAIVVYDITDEESF 93 (200)
T ss_pred hhhhhhhh------CccccccccccccEEEEEEEEeCCcEEEEEEEEcCCcccccccccceecCCcEEEEEEecccHHHH
Confidence 45556555 77777789999999875 333 358999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhCCCCCCCcEEEEEeCCCCCC--CCCHHHHHhHcCccccCCcceEEEEeeecCCCCHHHHHHHHHHHHH
Q 029517 96 EDSKTALEKVLRNEDLQGAPLLILANKQDLPD--AVSADELARYLDLKKLDERVCMFEAVSGYDGFGIKESVEWLVEVME 173 (192)
Q Consensus 96 ~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~e~~~~i~~~i~ 173 (192)
.+++.|+..+.+... +++-+.++|||+||.+ ++..+++..+++ ..+..|+|+|||+|.||+++|..|.+.+.
T Consensus 94 ~~aK~WvkeL~~~~~-~~~vialvGNK~DL~~~R~V~~~ea~~yAe-----~~gll~~ETSAKTg~Nv~~if~~Ia~~lp 167 (200)
T KOG0092|consen 94 EKAKNWVKELQRQAS-PNIVIALVGNKADLLERREVEFEEAQAYAE-----SQGLLFFETSAKTGENVNEIFQAIAEKLP 167 (200)
T ss_pred HHHHHHHHHHHhhCC-CCeEEEEecchhhhhhcccccHHHHHHHHH-----hcCCEEEEEecccccCHHHHHHHHHHhcc
Confidence 999999999998765 6788889999999987 899999999998 78999999999999999999999999998
Q ss_pred hcchhhh
Q 029517 174 RSKRTEM 180 (192)
Q Consensus 174 ~~~~~~~ 180 (192)
.....+.
T Consensus 168 ~~~~~~~ 174 (200)
T KOG0092|consen 168 CSDPQER 174 (200)
T ss_pred Ccccccc
Confidence 7765444
No 4
>PTZ00133 ADP-ribosylation factor; Provisional
Probab=99.97 E-value=1.7e-28 Score=179.87 Aligned_cols=169 Identities=34% Similarity=0.644 Sum_probs=138.9
Q ss_pred ChhhhHHHHhhhhccccHH------------HHHHHHhhhhccCCCCCCCCCCCCcceEEEEEEecCEEEEEEeCCCCcc
Q 029517 1 MFSLFYGLWKYIFTKTEFH------------TLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPG 68 (192)
Q Consensus 1 ~~~~~~~~~~~~~kst~~~------------~l~~~~~~~~~~~~~~~~~~~~~T~g~~~~~~~~~~~~~~i~D~~G~~~ 68 (192)
|..+++++++.+++.+-++ +|++++.. +.+.. +.||+|.++..+...++.+.+|||||+++
T Consensus 1 ~~~~~~~~~~~~~~~~~~kv~lvG~~~vGKTsli~~~~~------~~~~~-~~~T~~~~~~~~~~~~~~~~l~D~~G~~~ 73 (182)
T PTZ00133 1 MGLWLSSAFKSLFGKKEVRILMVGLDAAGKTTILYKLKL------GEVVT-TIPTIGFNVETVEYKNLKFTMWDVGGQDK 73 (182)
T ss_pred CchHHHHHHHHhcCCCccEEEEEcCCCCCHHHHHHHHhc------CCccc-cCCccccceEEEEECCEEEEEEECCCCHh
Confidence 7778888888876655453 77788764 44443 68999998888888889999999999999
Q ss_pred cHHHHHHhhhcCCEEEEEEeCCCcccHHHHHHHHHHHHhCCCCCCCcEEEEEeCCCCCCCCCHHHHHhHcCccccCCcce
Q 029517 69 LRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAVSADELARYLDLKKLDERVC 148 (192)
Q Consensus 69 ~~~~~~~~~~~~d~ii~v~D~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~ 148 (192)
++..+..+++++|++|+|+|+++.++++.+..++..+.......++|+++++||.|+.+....+++.+.+.........+
T Consensus 74 ~~~~~~~~~~~ad~iI~v~D~t~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~l~~~~~~~~~~ 153 (182)
T PTZ00133 74 LRPLWRHYYQNTNGLIFVVDSNDRERIGDAREELERMLSEDELRDAVLLVFANKQDLPNAMSTTEVTEKLGLHSVRQRNW 153 (182)
T ss_pred HHHHHHHHhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhCHhhcCCCEEEEEeCCCCCCCCCHHHHHHHhCCCcccCCcE
Confidence 99999999999999999999999999999988888887653335789999999999987777777777776544444566
Q ss_pred EEEEeeecCCCCHHHHHHHHHHHHHhcc
Q 029517 149 MFEAVSGYDGFGIKESVEWLVEVMERSK 176 (192)
Q Consensus 149 ~~~~~Sa~~~~gi~e~~~~i~~~i~~~~ 176 (192)
.++++||++|.|++++|+||.+.+.+..
T Consensus 154 ~~~~~Sa~tg~gv~e~~~~l~~~i~~~~ 181 (182)
T PTZ00133 154 YIQGCCATTAQGLYEGLDWLSANIKKSM 181 (182)
T ss_pred EEEeeeCCCCCCHHHHHHHHHHHHHHhc
Confidence 7889999999999999999998776643
No 5
>KOG0094 consensus GTPase Rab6/YPT6/Ryh1, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.96 E-value=1.9e-29 Score=179.55 Aligned_cols=146 Identities=23% Similarity=0.359 Sum_probs=128.6
Q ss_pred HHHHHHhhhhccCCCCCCCCCCCCcceEEEE----EEecCEEEEEEeCCCCcccHHHHHHhhhcCCEEEEEEeCCCcccH
Q 029517 20 TLLEKLKSVYSNVEGLPPDRIVPTVGLNIGR----IEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRF 95 (192)
Q Consensus 20 ~l~~~~~~~~~~~~~~~~~~~~~T~g~~~~~----~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ii~v~D~~~~~s~ 95 (192)
+|++|.-. +.|...|.+|||+++.. +....+++++|||+|||+|+.+.+.|++++.++|+|||+++..||
T Consensus 37 slItRf~y------d~fd~~YqATIGiDFlskt~~l~d~~vrLQlWDTAGQERFrslipsY~Rds~vaviVyDit~~~Sf 110 (221)
T KOG0094|consen 37 SLITRFMY------DKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIVYDITDRNSF 110 (221)
T ss_pred HHHHHHHH------hhhcccccceeeeEEEEEEEEEcCcEEEEEEEecccHHHHhhhhhhhccCCeEEEEEEeccccchH
Confidence 56666666 77889999999999974 445578999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhCCCCCCCcEEEEEeCCCCCC--CCCHHHHHhHcCccccCCcceEEEEeeecCCCCHHHHHHHHHHHHH
Q 029517 96 EDSKTALEKVLRNEDLQGAPLLILANKQDLPD--AVSADELARYLDLKKLDERVCMFEAVSGYDGFGIKESVEWLVEVME 173 (192)
Q Consensus 96 ~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~e~~~~i~~~i~ 173 (192)
+...+|++.+...+...+.-+++||||.||.+ +++.++....++ ..+..|.++||+.|.||.++|..|...+.
T Consensus 111 e~t~kWi~dv~~e~gs~~viI~LVGnKtDL~dkrqvs~eEg~~kAk-----el~a~f~etsak~g~NVk~lFrrIaa~l~ 185 (221)
T KOG0094|consen 111 ENTSKWIEDVRRERGSDDVIIFLVGNKTDLSDKRQVSIEEGERKAK-----ELNAEFIETSAKAGENVKQLFRRIAAALP 185 (221)
T ss_pred HHHHHHHHHHHhccCCCceEEEEEcccccccchhhhhHHHHHHHHH-----HhCcEEEEecccCCCCHHHHHHHHHHhcc
Confidence 99999999999987766788999999999987 677777777776 66779999999999999999999888776
Q ss_pred hcc
Q 029517 174 RSK 176 (192)
Q Consensus 174 ~~~ 176 (192)
...
T Consensus 186 ~~~ 188 (221)
T KOG0094|consen 186 GME 188 (221)
T ss_pred Ccc
Confidence 553
No 6
>KOG0078 consensus GTP-binding protein SEC4, small G protein superfamily, and related Ras family GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.96 E-value=4.3e-29 Score=180.46 Aligned_cols=147 Identities=22% Similarity=0.329 Sum_probs=133.3
Q ss_pred HHHHHHhhhhccCCCCCCCCCCCCcceEEEE----EEecCEEEEEEeCCCCcccHHHHHHhhhcCCEEEEEEeCCCcccH
Q 029517 20 TLLEKLKSVYSNVEGLPPDRIVPTVGLNIGR----IEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRF 95 (192)
Q Consensus 20 ~l~~~~~~~~~~~~~~~~~~~~~T~g~~~~~----~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ii~v~D~~~~~s~ 95 (192)
+|+.|+.- +.|...+..|+|+++.. +++..+.+++|||+||++|+.....|+++|.++++|||+++..||
T Consensus 27 ~~l~rf~d------~~f~~~~~sTiGIDFk~kti~l~g~~i~lQiWDtaGQerf~ti~~sYyrgA~gi~LvyDitne~Sf 100 (207)
T KOG0078|consen 27 CLLLRFSD------DSFNTSFISTIGIDFKIKTIELDGKKIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDITNEKSF 100 (207)
T ss_pred Hhhhhhhh------ccCcCCccceEEEEEEEEEEEeCCeEEEEEEEEcccchhHHHHHHHHHhhcCeeEEEEEccchHHH
Confidence 67777777 88999999999999983 445678999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhCCCCCCCcEEEEEeCCCCCC--CCCHHHHHhHcCccccCCcceEEEEeeecCCCCHHHHHHHHHHHHH
Q 029517 96 EDSKTALEKVLRNEDLQGAPLLILANKQDLPD--AVSADELARYLDLKKLDERVCMFEAVSGYDGFGIKESVEWLVEVME 173 (192)
Q Consensus 96 ~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~e~~~~i~~~i~ 173 (192)
+.+..|+..+.+..+ .+.|+++||||+|+.. +++.+...+++. ..++.|+|+|||+|.||+++|-.|.+.+.
T Consensus 101 eni~~W~~~I~e~a~-~~v~~~LvGNK~D~~~~R~V~~e~ge~lA~-----e~G~~F~EtSAk~~~NI~eaF~~La~~i~ 174 (207)
T KOG0078|consen 101 ENIRNWIKNIDEHAS-DDVVKILVGNKCDLEEKRQVSKERGEALAR-----EYGIKFFETSAKTNFNIEEAFLSLARDIL 174 (207)
T ss_pred HHHHHHHHHHHhhCC-CCCcEEEeeccccccccccccHHHHHHHHH-----HhCCeEEEccccCCCCHHHHHHHHHHHHH
Confidence 999999999988754 5899999999999987 899999999998 77999999999999999999999999998
Q ss_pred hcchh
Q 029517 174 RSKRT 178 (192)
Q Consensus 174 ~~~~~ 178 (192)
+....
T Consensus 175 ~k~~~ 179 (207)
T KOG0078|consen 175 QKLED 179 (207)
T ss_pred hhcch
Confidence 65433
No 7
>cd04120 Rab12 Rab12 subfamily. Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic
Probab=99.96 E-value=3e-28 Score=180.97 Aligned_cols=138 Identities=22% Similarity=0.343 Sum_probs=115.6
Q ss_pred CCCCCCCCCCcceEEE--EEEe--cCEEEEEEeCCCCcccHHHHHHhhhcCCEEEEEEeCCCcccHHHHHHHHHHHHhCC
Q 029517 34 GLPPDRIVPTVGLNIG--RIEV--SNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNE 109 (192)
Q Consensus 34 ~~~~~~~~~T~g~~~~--~~~~--~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ii~v~D~~~~~s~~~~~~~~~~i~~~~ 109 (192)
+.|...|.||+|.++. .+.. ..+.+++|||+|+++|+.++..|++++|++|+|||++++++|+.+..|+..+.+..
T Consensus 23 ~~f~~~~~~Ti~~~~~~~~i~~~~~~v~l~iwDtaGqe~~~~l~~~y~~~ad~iIlVfDvtd~~Sf~~l~~w~~~i~~~~ 102 (202)
T cd04120 23 DTFCEACKSGVGVDFKIKTVELRGKKIRLQIWDTAGQERFNSITSAYYRSAKGIILVYDITKKETFDDLPKWMKMIDKYA 102 (202)
T ss_pred CCCCCcCCCcceeEEEEEEEEECCEEEEEEEEeCCCchhhHHHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhC
Confidence 6677888999998775 3333 35899999999999999999999999999999999999999999999998776553
Q ss_pred CCCCCcEEEEEeCCCCCC--CCCHHHHHhHcCccccCCcceEEEEeeecCCCCHHHHHHHHHHHHHhcc
Q 029517 110 DLQGAPLLILANKQDLPD--AVSADELARYLDLKKLDERVCMFEAVSGYDGFGIKESVEWLVEVMERSK 176 (192)
Q Consensus 110 ~~~~~piiiv~nK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~e~~~~i~~~i~~~~ 176 (192)
..+.|+++|+||+|+.. .+..++..++++ ...++.+++|||++|.||+++|+++.+.+.+..
T Consensus 103 -~~~~piilVgNK~DL~~~~~v~~~~~~~~a~----~~~~~~~~etSAktg~gV~e~F~~l~~~~~~~~ 166 (202)
T cd04120 103 -SEDAELLLVGNKLDCETDREISRQQGEKFAQ----QITGMRFCEASAKDNFNVDEIFLKLVDDILKKM 166 (202)
T ss_pred -CCCCcEEEEEECcccccccccCHHHHHHHHH----hcCCCEEEEecCCCCCCHHHHHHHHHHHHHHhC
Confidence 25799999999999964 566667766665 123578999999999999999999999886643
No 8
>KOG0098 consensus GTPase Rab2, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.96 E-value=1.4e-28 Score=173.95 Aligned_cols=150 Identities=23% Similarity=0.329 Sum_probs=133.9
Q ss_pred HHHHHHHhhhhccCCCCCCCCCCCCcceEEE----EEEecCEEEEEEeCCCCcccHHHHHHhhhcCCEEEEEEeCCCccc
Q 029517 19 HTLLEKLKSVYSNVEGLPPDRIVPTVGLNIG----RIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSR 94 (192)
Q Consensus 19 ~~l~~~~~~~~~~~~~~~~~~~~~T~g~~~~----~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ii~v~D~~~~~s 94 (192)
..|+-|... ..|.+.+..|+|++++ +++.++++++||||+||+.|+.....|++.+.|+|+|||+++.++
T Consensus 20 Sclllrf~~------krF~~~hd~TiGvefg~r~~~id~k~IKlqiwDtaGqe~frsv~~syYr~a~GalLVydit~r~s 93 (216)
T KOG0098|consen 20 SCLLLRFTD------KRFQPVHDLTIGVEFGARMVTIDGKQIKLQIWDTAGQESFRSVTRSYYRGAAGALLVYDITRRES 93 (216)
T ss_pred HHHHHHHhc------cCccccccceeeeeeceeEEEEcCceEEEEEEecCCcHHHHHHHHHHhccCcceEEEEEccchhh
Confidence 366777776 7788888999999998 366778999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhCCCCCCCcEEEEEeCCCCCC--CCCHHHHHhHcCccccCCcceEEEEeeecCCCCHHHHHHHHHHHH
Q 029517 95 FEDSKTALEKVLRNEDLQGAPLLILANKQDLPD--AVSADELARYLDLKKLDERVCMFEAVSGYDGFGIKESVEWLVEVM 172 (192)
Q Consensus 95 ~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~e~~~~i~~~i 172 (192)
|..+..|+..+.+... .++.+++++||+||.. +++.||...+++ .++..+.++||+++.||+|+|......+
T Consensus 94 F~hL~~wL~D~rq~~~-~NmvImLiGNKsDL~~rR~Vs~EEGeaFA~-----ehgLifmETSakt~~~VEEaF~nta~~I 167 (216)
T KOG0098|consen 94 FNHLTSWLEDARQHSN-ENMVIMLIGNKSDLEARREVSKEEGEAFAR-----EHGLIFMETSAKTAENVEEAFINTAKEI 167 (216)
T ss_pred HHHHHHHHHHHHHhcC-CCcEEEEEcchhhhhccccccHHHHHHHHH-----HcCceeehhhhhhhhhHHHHHHHHHHHH
Confidence 9999999999998753 6899999999999977 899999999998 7899999999999999999999999888
Q ss_pred Hhcchhhh
Q 029517 173 ERSKRTEM 180 (192)
Q Consensus 173 ~~~~~~~~ 180 (192)
.+..+...
T Consensus 168 y~~~q~g~ 175 (216)
T KOG0098|consen 168 YRKIQDGV 175 (216)
T ss_pred HHHHHhcc
Confidence 76554433
No 9
>KOG0070 consensus GTP-binding ADP-ribosylation factor Arf1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.96 E-value=1.6e-28 Score=174.01 Aligned_cols=168 Identities=36% Similarity=0.681 Sum_probs=154.0
Q ss_pred ChhhhHHHHhhhhccccHH------------HHHHHHhhhhccCCCCCCCCCCCCcceEEEEEEecCEEEEEEeCCCCcc
Q 029517 1 MFSLFYGLWKYIFTKTEFH------------TLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPG 68 (192)
Q Consensus 1 ~~~~~~~~~~~~~kst~~~------------~l~~~~~~~~~~~~~~~~~~~~~T~g~~~~~~~~~~~~~~i~D~~G~~~ 68 (192)
|..++++++..++...-++ |++++++. +++.++ .||+|.++..+.++++++.+||++|+++
T Consensus 1 MG~~~s~~~~~~~~~~e~~IlmlGLD~AGKTTILykLk~------~E~vtt-vPTiGfnVE~v~ykn~~f~vWDvGGq~k 73 (181)
T KOG0070|consen 1 MGLIFSKLFSGLFGKKEMRILMVGLDAAGKTTILYKLKL------GEIVTT-VPTIGFNVETVEYKNISFTVWDVGGQEK 73 (181)
T ss_pred CcchhhhhhhhccCcceEEEEEEeccCCCceeeeEeecc------CCcccC-CCccccceeEEEEcceEEEEEecCCCcc
Confidence 7888999999877766665 78888887 666666 9999999999999999999999999999
Q ss_pred cHHHHHHhhhcCCEEEEEEeCCCcccHHHHHHHHHHHHhCCCCCCCcEEEEEeCCCCCCCCCHHHHHhHcCccccCCcce
Q 029517 69 LRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAVSADELARYLDLKKLDERVC 148 (192)
Q Consensus 69 ~~~~~~~~~~~~d~ii~v~D~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~ 148 (192)
++..|..|+++.+++|||+|++|.+.+.++++.+..+....+..+.|+++++||.|++++.+..++.+.+.+..+..+.+
T Consensus 74 ~R~lW~~Y~~~t~~lIfVvDS~Dr~Ri~eak~eL~~~l~~~~l~~~~llv~aNKqD~~~als~~ei~~~L~l~~l~~~~w 153 (181)
T KOG0070|consen 74 LRPLWKHYFQNTQGLIFVVDSSDRERIEEAKEELHRMLAEPELRNAPLLVFANKQDLPGALSAAEITNKLGLHSLRSRNW 153 (181)
T ss_pred cccchhhhccCCcEEEEEEeCCcHHHHHHHHHHHHHHHcCcccCCceEEEEechhhccccCCHHHHHhHhhhhccCCCCc
Confidence 99999999999999999999999999999999999999887777899999999999999999999999999888888999
Q ss_pred EEEEeeecCCCCHHHHHHHHHHHHHhc
Q 029517 149 MFEAVSGYDGFGIKESVEWLVEVMERS 175 (192)
Q Consensus 149 ~~~~~Sa~~~~gi~e~~~~i~~~i~~~ 175 (192)
.+..|+|.+|+|+.|.++|+.+.+.+.
T Consensus 154 ~iq~~~a~~G~GL~egl~wl~~~~~~~ 180 (181)
T KOG0070|consen 154 HIQSTCAISGEGLYEGLDWLSNNLKKR 180 (181)
T ss_pred EEeeccccccccHHHHHHHHHHHHhcc
Confidence 999999999999999999999887653
No 10
>cd04121 Rab40 Rab40 subfamily. This subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide d
Probab=99.96 E-value=5.7e-28 Score=177.86 Aligned_cols=145 Identities=21% Similarity=0.355 Sum_probs=122.7
Q ss_pred HHHHHHhhhhccCCCCCCCCCCCCcceEEEE--E--EecCEEEEEEeCCCCcccHHHHHHhhhcCCEEEEEEeCCCcccH
Q 029517 20 TLLEKLKSVYSNVEGLPPDRIVPTVGLNIGR--I--EVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRF 95 (192)
Q Consensus 20 ~l~~~~~~~~~~~~~~~~~~~~~T~g~~~~~--~--~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ii~v~D~~~~~s~ 95 (192)
+|+.++.. +.+...|.||+|.++.. + +...+.+++|||+|+++|..++..+++++|++|+|||++++.+|
T Consensus 21 sll~~~~~------~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~iwDt~G~~~~~~l~~~~~~~ad~illVfD~t~~~Sf 94 (189)
T cd04121 21 EILASLQD------GSTESPYGYNMGIDYKTTTILLDGRRVKLQLWDTSGQGRFCTIFRSYSRGAQGIILVYDITNRWSF 94 (189)
T ss_pred HHHHHHHc------CCCCCCCCCcceeEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhcCCCEEEEEEECcCHHHH
Confidence 44555554 56667788898887652 3 33458999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhCCCCCCCcEEEEEeCCCCCC--CCCHHHHHhHcCccccCCcceEEEEeeecCCCCHHHHHHHHHHHHH
Q 029517 96 EDSKTALEKVLRNEDLQGAPLLILANKQDLPD--AVSADELARYLDLKKLDERVCMFEAVSGYDGFGIKESVEWLVEVME 173 (192)
Q Consensus 96 ~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~e~~~~i~~~i~ 173 (192)
+.+..|+..+.... .+.|+++||||.|+.. .++.+++.++++ ..++++++|||++|.||+++|++|.+.+.
T Consensus 95 ~~~~~w~~~i~~~~--~~~piilVGNK~DL~~~~~v~~~~~~~~a~-----~~~~~~~e~SAk~g~~V~~~F~~l~~~i~ 167 (189)
T cd04121 95 DGIDRWIKEIDEHA--PGVPKILVGNRLHLAFKRQVATEQAQAYAE-----RNGMTFFEVSPLCNFNITESFTELARIVL 167 (189)
T ss_pred HHHHHHHHHHHHhC--CCCCEEEEEECccchhccCCCHHHHHHHHH-----HcCCEEEEecCCCCCCHHHHHHHHHHHHH
Confidence 99999999997754 5799999999999965 677888888886 55789999999999999999999999887
Q ss_pred hcch
Q 029517 174 RSKR 177 (192)
Q Consensus 174 ~~~~ 177 (192)
....
T Consensus 168 ~~~~ 171 (189)
T cd04121 168 MRHG 171 (189)
T ss_pred HhcC
Confidence 6554
No 11
>KOG0093 consensus GTPase Rab3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.96 E-value=1.3e-28 Score=167.75 Aligned_cols=148 Identities=20% Similarity=0.312 Sum_probs=129.8
Q ss_pred HHHHHHHhhhhccCCCCCCCCCCCCcceEEEE---EE-ecCEEEEEEeCCCCcccHHHHHHhhhcCCEEEEEEeCCCccc
Q 029517 19 HTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGR---IE-VSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSR 94 (192)
Q Consensus 19 ~~l~~~~~~~~~~~~~~~~~~~~~T~g~~~~~---~~-~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ii~v~D~~~~~s 94 (192)
-+++-|... +.|...+..|.|+.+.. +. .+.++++||||+|+++|+.....|+++++++|+|||+++.+|
T Consensus 35 TSfl~ry~d------dSFt~afvsTvGidFKvKTvyr~~kRiklQiwDTagqEryrtiTTayyRgamgfiLmyDitNeeS 108 (193)
T KOG0093|consen 35 TSFLFRYAD------DSFTSAFVSTVGIDFKVKTVYRSDKRIKLQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEES 108 (193)
T ss_pred hhhhHHhhc------cccccceeeeeeeeEEEeEeeecccEEEEEEEecccchhhhHHHHHHhhccceEEEEEecCCHHH
Confidence 356666665 78888999999999874 22 245899999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhCCCCCCCcEEEEEeCCCCCC--CCCHHHHHhHcCccccCCcceEEEEeeecCCCCHHHHHHHHHHHH
Q 029517 95 FEDSKTALEKVLRNEDLQGAPLLILANKQDLPD--AVSADELARYLDLKKLDERVCMFEAVSGYDGFGIKESVEWLVEVM 172 (192)
Q Consensus 95 ~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~e~~~~i~~~i 172 (192)
|..++.|...|...++ .+.|+|+++||+|+.. .++.|..+.++. ..|+.|||+|||.+.||+++|+.++..+
T Consensus 109 f~svqdw~tqIktysw-~naqvilvgnKCDmd~eRvis~e~g~~l~~-----~LGfefFEtSaK~NinVk~~Fe~lv~~I 182 (193)
T KOG0093|consen 109 FNSVQDWITQIKTYSW-DNAQVILVGNKCDMDSERVISHERGRQLAD-----QLGFEFFETSAKENINVKQVFERLVDII 182 (193)
T ss_pred HHHHHHHHHHheeeec-cCceEEEEecccCCccceeeeHHHHHHHHH-----HhChHHhhhcccccccHHHHHHHHHHHH
Confidence 9999999999998866 6899999999999977 577788888887 7789999999999999999999999999
Q ss_pred Hhcchh
Q 029517 173 ERSKRT 178 (192)
Q Consensus 173 ~~~~~~ 178 (192)
.+.+..
T Consensus 183 c~kmse 188 (193)
T KOG0093|consen 183 CDKMSE 188 (193)
T ss_pred HHHhhh
Confidence 877643
No 12
>cd04149 Arf6 Arf6 subfamily. Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed t
Probab=99.95 E-value=5.2e-27 Score=169.92 Aligned_cols=132 Identities=33% Similarity=0.714 Sum_probs=115.0
Q ss_pred CCCCCcceEEEEEEecCEEEEEEeCCCCcccHHHHHHhhhcCCEEEEEEeCCCcccHHHHHHHHHHHHhCCCCCCCcEEE
Q 029517 39 RIVPTVGLNIGRIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLI 118 (192)
Q Consensus 39 ~~~~T~g~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ii~v~D~~~~~s~~~~~~~~~~i~~~~~~~~~piii 118 (192)
.+.||+|.++..+...++.+++|||||+++++..+..+++++|++|+|+|++++.+++++..|+..+.......++|+++
T Consensus 36 ~~~~t~g~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~a~~ii~v~D~t~~~s~~~~~~~~~~~~~~~~~~~~piil 115 (168)
T cd04149 36 TTIPTVGFNVETVTYKNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDSADRDRIDEARQELHRIINDREMRDALLLV 115 (168)
T ss_pred cccCCcccceEEEEECCEEEEEEECCCCHHHHHHHHHHhccCCEEEEEEeCCchhhHHHHHHHHHHHhcCHhhcCCcEEE
Confidence 46889999888787888999999999999999999999999999999999999999999999988887653335789999
Q ss_pred EEeCCCCCCCCCHHHHHhHcCccccCCcceEEEEeeecCCCCHHHHHHHHHH
Q 029517 119 LANKQDLPDAVSADELARYLDLKKLDERVCMFEAVSGYDGFGIKESVEWLVE 170 (192)
Q Consensus 119 v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~e~~~~i~~ 170 (192)
|+||+|+.+..+.+++.+.+++.......+.++++||++|.||+++|+||.+
T Consensus 116 v~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~SAk~g~gv~~~~~~l~~ 167 (168)
T cd04149 116 FANKQDLPDAMKPHEIQEKLGLTRIRDRNWYVQPSCATSGDGLYEGLTWLSS 167 (168)
T ss_pred EEECcCCccCCCHHHHHHHcCCCccCCCcEEEEEeeCCCCCChHHHHHHHhc
Confidence 9999999877778888888875444455678999999999999999999865
No 13
>smart00177 ARF ARF-like small GTPases; ARF, ADP-ribosylation factor. Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop).
Probab=99.95 E-value=1e-26 Score=169.45 Aligned_cols=146 Identities=33% Similarity=0.686 Sum_probs=121.6
Q ss_pred HHHHHHhhhhccCCCCCCCCCCCCcceEEEEEEecCEEEEEEeCCCCcccHHHHHHhhhcCCEEEEEEeCCCcccHHHHH
Q 029517 20 TLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSK 99 (192)
Q Consensus 20 ~l~~~~~~~~~~~~~~~~~~~~~T~g~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ii~v~D~~~~~s~~~~~ 99 (192)
+|++++.. +.+ ..+.||+|.++..+....+.+.+||+||++++...+..+++++|++|+|+|++++++++++.
T Consensus 28 sL~~~~~~------~~~-~~~~~t~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~ad~ii~v~D~t~~~s~~~~~ 100 (175)
T smart00177 28 TILYKLKL------GES-VTTIPTIGFNVETVTYKNISFTVWDVGGQDKIRPLWRHYYTNTQGLIFVVDSNDRDRIDEAR 100 (175)
T ss_pred HHHHHHhc------CCC-CCcCCccccceEEEEECCEEEEEEECCCChhhHHHHHHHhCCCCEEEEEEECCCHHHHHHHH
Confidence 45555543 334 34689999988888788899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhCCCCCCCcEEEEEeCCCCCCCCCHHHHHhHcCccccCCcceEEEEeeecCCCCHHHHHHHHHHHH
Q 029517 100 TALEKVLRNEDLQGAPLLILANKQDLPDAVSADELARYLDLKKLDERVCMFEAVSGYDGFGIKESVEWLVEVM 172 (192)
Q Consensus 100 ~~~~~i~~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~e~~~~i~~~i 172 (192)
+|+..+.......++|+++|+||.|+.+..+.+++.+.+.........+.++++||++|.||+++|+||.+.+
T Consensus 101 ~~l~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~g~gv~e~~~~l~~~~ 173 (175)
T smart00177 101 EELHRMLNEDELRDAVILVFANKQDLPDAMKAAEITEKLGLHSIRDRNWYIQPTCATSGDGLYEGLTWLSNNL 173 (175)
T ss_pred HHHHHHhhCHhhcCCcEEEEEeCcCcccCCCHHHHHHHhCccccCCCcEEEEEeeCCCCCCHHHHHHHHHHHh
Confidence 9999887653335789999999999987767777777776544445567788999999999999999998764
No 14
>cd04150 Arf1_5_like Arf1-Arf5-like subfamily. This subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents
Probab=99.95 E-value=1e-26 Score=166.98 Aligned_cols=146 Identities=33% Similarity=0.654 Sum_probs=118.9
Q ss_pred ccccHHHHHHHHhhhhccCCCCCCCCCCCCcceEEEEEEecCEEEEEEeCCCCcccHHHHHHhhhcCCEEEEEEeCCCcc
Q 029517 14 TKTEFHTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPS 93 (192)
Q Consensus 14 kst~~~~l~~~~~~~~~~~~~~~~~~~~~T~g~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ii~v~D~~~~~ 93 (192)
|||+++++. . +.+. .+.||+|.++..+....+.+.+||+||++++...+..+++++|++|+|+|+++..
T Consensus 13 KTsli~~l~----~------~~~~-~~~pt~g~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~ad~~i~v~D~~~~~ 81 (159)
T cd04150 13 KTTILYKLK----L------GEIV-TTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRE 81 (159)
T ss_pred HHHHHHHHh----c------CCCc-ccCCCCCcceEEEEECCEEEEEEECCCCHhHHHHHHHHhcCCCEEEEEEeCCCHH
Confidence 666666653 2 3333 4689999888778788899999999999999999999999999999999999999
Q ss_pred cHHHHHHHHHHHHhCCCCCCCcEEEEEeCCCCCCCCCHHHHHhHcCccccCCcceEEEEeeecCCCCHHHHHHHHHH
Q 029517 94 RFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAVSADELARYLDLKKLDERVCMFEAVSGYDGFGIKESVEWLVE 170 (192)
Q Consensus 94 s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~e~~~~i~~ 170 (192)
+++.+..++..+.......+.|+++++||+|+.+....+++.+.+.+.......+.++++||++|+||+++|+||.+
T Consensus 82 s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~Sak~g~gv~~~~~~l~~ 158 (159)
T cd04150 82 RIGEAREELQRMLNEDELRDAVLLVFANKQDLPNAMSAAEVTDKLGLHSLRNRNWYIQATCATSGDGLYEGLDWLSN 158 (159)
T ss_pred HHHHHHHHHHHHHhcHHhcCCCEEEEEECCCCCCCCCHHHHHHHhCccccCCCCEEEEEeeCCCCCCHHHHHHHHhc
Confidence 99999998888876533356899999999999776566666665554444455677889999999999999999864
No 15
>KOG0394 consensus Ras-related GTPase [General function prediction only]
Probab=99.95 E-value=3.3e-28 Score=171.69 Aligned_cols=149 Identities=19% Similarity=0.301 Sum_probs=128.3
Q ss_pred HHHHHHhhhhccCCCCCCCCCCCCcceEEEE----EEecCEEEEEEeCCCCcccHHHHHHhhhcCCEEEEEEeCCCcccH
Q 029517 20 TLLEKLKSVYSNVEGLPPDRIVPTVGLNIGR----IEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRF 95 (192)
Q Consensus 20 ~l~~~~~~~~~~~~~~~~~~~~~T~g~~~~~----~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ii~v~D~~~~~s~ 95 (192)
+|++|... ..|...|..|||.++.. ++...+.++||||+|+++|.++.-.+++++|+.++|||..++.+|
T Consensus 24 SLmn~yv~------~kF~~qykaTIgadFltKev~Vd~~~vtlQiWDTAGQERFqsLg~aFYRgaDcCvlvydv~~~~Sf 97 (210)
T KOG0394|consen 24 SLMNQYVN------KKFSQQYKATIGADFLTKEVQVDDRSVTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNNPKSF 97 (210)
T ss_pred HHHHHHHH------HHHHHHhccccchhheeeEEEEcCeEEEEEEEecccHHHhhhcccceecCCceEEEEeecCChhhh
Confidence 45555555 56677889999998874 455568999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhCCCC---CCCcEEEEEeCCCCCC----CCCHHHHHhHcCccccCCcceEEEEeeecCCCCHHHHHHHH
Q 029517 96 EDSKTALEKVLRNEDL---QGAPLLILANKQDLPD----AVSADELARYLDLKKLDERVCMFEAVSGYDGFGIKESVEWL 168 (192)
Q Consensus 96 ~~~~~~~~~i~~~~~~---~~~piiiv~nK~Dl~~----~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~e~~~~i 168 (192)
+.+..|.++++..... ...|++++|||+|+.+ +++.+.++++++ ...+++|||+|||.+.||.++|+.+
T Consensus 98 e~L~~Wr~EFl~qa~~~~Pe~FPFVilGNKiD~~~~~~r~VS~~~Aq~WC~----s~gnipyfEtSAK~~~NV~~AFe~i 173 (210)
T KOG0394|consen 98 ENLENWRKEFLIQASPQDPETFPFVILGNKIDVDGGKSRQVSEKKAQTWCK----SKGNIPYFETSAKEATNVDEAFEEI 173 (210)
T ss_pred ccHHHHHHHHHHhcCCCCCCcccEEEEcccccCCCCccceeeHHHHHHHHH----hcCCceeEEecccccccHHHHHHHH
Confidence 9999999999875432 3579999999999965 688899999998 4668999999999999999999999
Q ss_pred HHHHHhcchh
Q 029517 169 VEVMERSKRT 178 (192)
Q Consensus 169 ~~~i~~~~~~ 178 (192)
.+..+...+.
T Consensus 174 a~~aL~~E~~ 183 (210)
T KOG0394|consen 174 ARRALANEDR 183 (210)
T ss_pred HHHHHhccch
Confidence 9988877643
No 16
>cd04133 Rop_like Rop subfamily. The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example,
Probab=99.95 E-value=2.6e-27 Score=172.50 Aligned_cols=141 Identities=18% Similarity=0.264 Sum_probs=118.0
Q ss_pred HHHHHHhhhhccCCCCCCCCCCCCcceEEEE---EEecCEEEEEEeCCCCcccHHHHHHhhhcCCEEEEEEeCCCcccHH
Q 029517 20 TLLEKLKSVYSNVEGLPPDRIVPTVGLNIGR---IEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFE 96 (192)
Q Consensus 20 ~l~~~~~~~~~~~~~~~~~~~~~T~g~~~~~---~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ii~v~D~~~~~s~~ 96 (192)
+|+.|+.. +.|...|.||+|..+.. +++..++++||||+|+++|+.++..++++++++|+|||++++++|+
T Consensus 16 sli~~~~~------~~f~~~~~~Ti~~~~~~~~~~~~~~v~l~i~Dt~G~~~~~~~~~~~~~~a~~~ilvyd~~~~~Sf~ 89 (176)
T cd04133 16 CMLICYTS------NKFPTDYIPTVFDNFSANVSVDGNTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLISRASYE 89 (176)
T ss_pred HHHHHHhc------CCCCCCCCCcceeeeEEEEEECCEEEEEEEEECCCCccccccchhhcCCCcEEEEEEEcCCHHHHH
Confidence 45555555 77888899999977652 3345689999999999999999999999999999999999999999
Q ss_pred HH-HHHHHHHHhCCCCCCCcEEEEEeCCCCCCC------------CCHHHHHhHcCccccCCcce-EEEEeeecCCCCHH
Q 029517 97 DS-KTALEKVLRNEDLQGAPLLILANKQDLPDA------------VSADELARYLDLKKLDERVC-MFEAVSGYDGFGIK 162 (192)
Q Consensus 97 ~~-~~~~~~i~~~~~~~~~piiiv~nK~Dl~~~------------~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~gi~ 162 (192)
.+ ..|+..+.... .+.|+++||||+|+.+. ++.++..+++. ..+. .++||||++|.||+
T Consensus 90 ~~~~~w~~~i~~~~--~~~piilvgnK~Dl~~~~~~~~~~~~~~~v~~~~~~~~a~-----~~~~~~~~E~SAk~~~nV~ 162 (176)
T cd04133 90 NVLKKWVPELRHYA--PNVPIVLVGTKLDLRDDKQYLADHPGASPITTAQGEELRK-----QIGAAAYIECSSKTQQNVK 162 (176)
T ss_pred HHHHHHHHHHHHhC--CCCCEEEEEeChhhccChhhhhhccCCCCCCHHHHHHHHH-----HcCCCEEEECCCCcccCHH
Confidence 98 68999887654 47999999999999542 66777777776 4455 69999999999999
Q ss_pred HHHHHHHHHHH
Q 029517 163 ESVEWLVEVME 173 (192)
Q Consensus 163 e~~~~i~~~i~ 173 (192)
++|+.+.+.+.
T Consensus 163 ~~F~~~~~~~~ 173 (176)
T cd04133 163 AVFDAAIKVVL 173 (176)
T ss_pred HHHHHHHHHHh
Confidence 99999998764
No 17
>cd01875 RhoG RhoG subfamily. RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-termin
Probab=99.95 E-value=7.6e-27 Score=172.39 Aligned_cols=143 Identities=20% Similarity=0.305 Sum_probs=115.0
Q ss_pred HHHHHHhhhhccCCCCCCCCCCCCcceEEE---EEEecCEEEEEEeCCCCcccHHHHHHhhhcCCEEEEEEeCCCcccHH
Q 029517 20 TLLEKLKSVYSNVEGLPPDRIVPTVGLNIG---RIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFE 96 (192)
Q Consensus 20 ~l~~~~~~~~~~~~~~~~~~~~~T~g~~~~---~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ii~v~D~~~~~s~~ 96 (192)
+|+.|+.. +.|.+.|.||+|..+. .+++..+.+++|||+|+++|+.++..+++++|++|+|||++++.+|+
T Consensus 18 sli~~~~~------~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~e~~~~l~~~~~~~a~~~ilvydit~~~Sf~ 91 (191)
T cd01875 18 CLLICYTT------NAFPKEYIPTVFDNYSAQTAVDGRTVSLNLWDTAGQEEYDRLRTLSYPQTNVFIICFSIASPSSYE 91 (191)
T ss_pred HHHHHHHh------CCCCcCCCCceEeeeEEEEEECCEEEEEEEEECCCchhhhhhhhhhccCCCEEEEEEECCCHHHHH
Confidence 44555554 6777889999998765 24455689999999999999999999999999999999999999999
Q ss_pred HHH-HHHHHHHhCCCCCCCcEEEEEeCCCCCCC--------------CCHHHHHhHcCccccCCcc-eEEEEeeecCCCC
Q 029517 97 DSK-TALEKVLRNEDLQGAPLLILANKQDLPDA--------------VSADELARYLDLKKLDERV-CMFEAVSGYDGFG 160 (192)
Q Consensus 97 ~~~-~~~~~i~~~~~~~~~piiiv~nK~Dl~~~--------------~~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~g 160 (192)
.+. .|+..+.... .++|+++|+||.|+.+. +..++..++++ ..+ .+++++||++|.|
T Consensus 92 ~~~~~w~~~i~~~~--~~~piilvgNK~DL~~~~~~~~~~~~~~~~~v~~~~~~~~a~-----~~~~~~~~e~SAk~g~~ 164 (191)
T cd01875 92 NVRHKWHPEVCHHC--PNVPILLVGTKKDLRNDADTLKKLKEQGQAPITPQQGGALAK-----QIHAVKYLECSALNQDG 164 (191)
T ss_pred HHHHHHHHHHHhhC--CCCCEEEEEeChhhhcChhhHHHHhhccCCCCCHHHHHHHHH-----HcCCcEEEEeCCCCCCC
Confidence 997 5877776543 47999999999999642 23344444443 334 6899999999999
Q ss_pred HHHHHHHHHHHHHhc
Q 029517 161 IKESVEWLVEVMERS 175 (192)
Q Consensus 161 i~e~~~~i~~~i~~~ 175 (192)
|+++|+++.+.+...
T Consensus 165 v~e~f~~l~~~~~~~ 179 (191)
T cd01875 165 VKEVFAEAVRAVLNP 179 (191)
T ss_pred HHHHHHHHHHHHhcc
Confidence 999999999988653
No 18
>cd04158 ARD1 ARD1 subfamily. ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membra
Probab=99.95 E-value=3.7e-26 Score=165.52 Aligned_cols=151 Identities=34% Similarity=0.635 Sum_probs=125.0
Q ss_pred ccccHHHHHHHHhhhhccCCCCCCCCCCCCcceEEEEEEecCEEEEEEeCCCCcccHHHHHHhhhcCCEEEEEEeCCCcc
Q 029517 14 TKTEFHTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPS 93 (192)
Q Consensus 14 kst~~~~l~~~~~~~~~~~~~~~~~~~~~T~g~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ii~v~D~~~~~ 93 (192)
|||++++|.+. .+ ..+.||+|.++..+....+++.+|||||++.+...+..+++++|++++|+|+++++
T Consensus 12 KTsl~~~l~~~----------~~-~~~~~T~~~~~~~~~~~~~~i~l~Dt~G~~~~~~~~~~~~~~ad~ii~V~D~s~~~ 80 (169)
T cd04158 12 KTTILFKLKQD----------EF-MQPIPTIGFNVETVEYKNLKFTIWDVGGKHKLRPLWKHYYLNTQAVVFVVDSSHRD 80 (169)
T ss_pred HHHHHHHHhcC----------CC-CCcCCcCceeEEEEEECCEEEEEEECCCChhcchHHHHHhccCCEEEEEEeCCcHH
Confidence 66766666432 23 34789999988888888999999999999999999999999999999999999999
Q ss_pred cHHHHHHHHHHHHhCCCCCCCcEEEEEeCCCCCCCCCHHHHHhHcCccccC-CcceEEEEeeecCCCCHHHHHHHHHHHH
Q 029517 94 RFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAVSADELARYLDLKKLD-ERVCMFEAVSGYDGFGIKESVEWLVEVM 172 (192)
Q Consensus 94 s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~-~~~~~~~~~Sa~~~~gi~e~~~~i~~~i 172 (192)
+++++..|+..+.+.....+.|+++++||+|+....+.+++.+++...... ...+.++++||++|.||+++|+||.+.+
T Consensus 81 s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~~f~~l~~~~ 160 (169)
T cd04158 81 RVSEAHSELAKLLTEKELRDALLLIFANKQDVAGALSVEEMTELLSLHKLCCGRSWYIQGCDARSGMGLYEGLDWLSRQL 160 (169)
T ss_pred HHHHHHHHHHHHhcChhhCCCCEEEEEeCcCcccCCCHHHHHHHhCCccccCCCcEEEEeCcCCCCCCHHHHHHHHHHHH
Confidence 999999999999876444568999999999998777888888877643221 2245788999999999999999998876
Q ss_pred Hhc
Q 029517 173 ERS 175 (192)
Q Consensus 173 ~~~ 175 (192)
...
T Consensus 161 ~~~ 163 (169)
T cd04158 161 VAA 163 (169)
T ss_pred hhc
Confidence 654
No 19
>cd04157 Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A
Probab=99.95 E-value=1.5e-26 Score=165.85 Aligned_cols=148 Identities=33% Similarity=0.582 Sum_probs=119.0
Q ss_pred ccccHHHHHHHHhhhhccCCCCCCCCCCCCcceEEEEEEecCEEEEEEeCCCCcccHHHHHHhhhcCCEEEEEEeCCCcc
Q 029517 14 TKTEFHTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPS 93 (192)
Q Consensus 14 kst~~~~l~~~~~~~~~~~~~~~~~~~~~T~g~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ii~v~D~~~~~ 93 (192)
|||++++|.+. ..+...+.||+|.....+...++.+.+|||||++++...+..+++++|++|+|+|+++..
T Consensus 12 KTsl~~~l~~~---------~~~~~~~~~t~g~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~D~~~~~ 82 (162)
T cd04157 12 KTTIINQLKPE---------NAQSQIIVPTVGFNVESFEKGNLSFTAFDMSGQGKYRGLWEHYYKNIQGIIFVIDSSDRL 82 (162)
T ss_pred HHHHHHHHccc---------CCCcceecCccccceEEEEECCEEEEEEECCCCHhhHHHHHHHHccCCEEEEEEeCCcHH
Confidence 67777766542 123456789999887777778899999999999999999999999999999999999999
Q ss_pred cHHHHHHHHHHHHhCCC--CCCCcEEEEEeCCCCCCCCCHHHHHhHcCccccCCcceEEEEeeecCCCCHHHHHHHHHH
Q 029517 94 RFEDSKTALEKVLRNED--LQGAPLLILANKQDLPDAVSADELARYLDLKKLDERVCMFEAVSGYDGFGIKESVEWLVE 170 (192)
Q Consensus 94 s~~~~~~~~~~i~~~~~--~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~e~~~~i~~ 170 (192)
++..+..|+..+.+... ..++|+++++||+|+.++...+++.+.+.+.......+.++++||++|.|++++|+||.+
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~p~iiv~NK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~Sa~~g~gv~~~~~~l~~ 161 (162)
T cd04157 83 RLVVVKDELELLLNHPDIKHRRVPILFFANKMDLPDALTAVKITQLLGLENIKDKPWHIFASNALTGEGLDEGVQWLQA 161 (162)
T ss_pred HHHHHHHHHHHHHcCcccccCCCCEEEEEeCccccCCCCHHHHHHHhCCccccCceEEEEEeeCCCCCchHHHHHHHhc
Confidence 99988888888766422 147999999999999876566666666553322234567999999999999999999875
No 20
>cd04141 Rit_Rin_Ric Rit/Rin/Ric subfamily. Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to sign
Probab=99.95 E-value=1.1e-26 Score=168.77 Aligned_cols=138 Identities=20% Similarity=0.254 Sum_probs=115.3
Q ss_pred CCCCCCCCCCcceEEE-E--EEecCEEEEEEeCCCCcccHHHHHHhhhcCCEEEEEEeCCCcccHHHHHHHHHHHHhCCC
Q 029517 34 GLPPDRIVPTVGLNIG-R--IEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNED 110 (192)
Q Consensus 34 ~~~~~~~~~T~g~~~~-~--~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ii~v~D~~~~~s~~~~~~~~~~i~~~~~ 110 (192)
+.+...+.||++..+. . +++..+.+++|||||+++|..++..+++.+|++|+|||++++.+|+.+..|...+.+...
T Consensus 25 ~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~~d~~ilv~d~~~~~Sf~~~~~~~~~i~~~~~ 104 (172)
T cd04141 25 HSFPDYHDPTIEDAYKQQARIDNEPALLDILDTAGQAEFTAMRDQYMRCGEGFIICYSVTDRHSFQEASEFKKLITRVRL 104 (172)
T ss_pred CCCCCCcCCcccceEEEEEEECCEEEEEEEEeCCCchhhHHHhHHHhhcCCEEEEEEECCchhHHHHHHHHHHHHHHhcC
Confidence 5566778999987665 2 334457899999999999999999999999999999999999999999998877766433
Q ss_pred CCCCcEEEEEeCCCCCC--CCCHHHHHhHcCccccCCcceEEEEeeecCCCCHHHHHHHHHHHHHhcc
Q 029517 111 LQGAPLLILANKQDLPD--AVSADELARYLDLKKLDERVCMFEAVSGYDGFGIKESVEWLVEVMERSK 176 (192)
Q Consensus 111 ~~~~piiiv~nK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~e~~~~i~~~i~~~~ 176 (192)
..++|+++|+||+|+.+ .++.++..++++ ..++++++|||++|.||+++|++|++.+.+..
T Consensus 105 ~~~~piilvgNK~Dl~~~~~v~~~~~~~~a~-----~~~~~~~e~Sa~~~~~v~~~f~~l~~~~~~~~ 167 (172)
T cd04141 105 TEDIPLVLVGNKVDLESQRQVTTEEGRNLAR-----EFNCPFFETSAALRHYIDDAFHGLVREIRRKE 167 (172)
T ss_pred CCCCCEEEEEEChhhhhcCccCHHHHHHHHH-----HhCCEEEEEecCCCCCHHHHHHHHHHHHHHhc
Confidence 35799999999999865 466777777765 45789999999999999999999998877543
No 21
>KOG0079 consensus GTP-binding protein H-ray, small G protein superfamily [General function prediction only]
Probab=99.95 E-value=2.7e-27 Score=161.56 Aligned_cols=145 Identities=23% Similarity=0.383 Sum_probs=131.5
Q ss_pred HHHHHHHhhhhccCCCCCCCCCCCCcceEEE----EEEecCEEEEEEeCCCCcccHHHHHHhhhcCCEEEEEEeCCCccc
Q 029517 19 HTLLEKLKSVYSNVEGLPPDRIVPTVGLNIG----RIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSR 94 (192)
Q Consensus 19 ~~l~~~~~~~~~~~~~~~~~~~~~T~g~~~~----~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ii~v~D~~~~~s 94 (192)
.+|+-++.. ++|...|..|+|+++. .+++..++++|||++|+++|+.....|+++.+++++|||+++.+|
T Consensus 22 ssLl~rF~d------dtFs~sYitTiGvDfkirTv~i~G~~VkLqIwDtAGqErFrtitstyyrgthgv~vVYDVTn~ES 95 (198)
T KOG0079|consen 22 SSLLLRFAD------DTFSGSYITTIGVDFKIRTVDINGDRVKLQIWDTAGQERFRTITSTYYRGTHGVIVVYDVTNGES 95 (198)
T ss_pred HHHHHHHhh------cccccceEEEeeeeEEEEEeecCCcEEEEEEeecccHHHHHHHHHHHccCCceEEEEEECcchhh
Confidence 356667776 8899999999999987 366778999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhCCCCCCCcEEEEEeCCCCCC--CCCHHHHHhHcCccccCCcceEEEEeeecCCCCHHHHHHHHHHHH
Q 029517 95 FEDSKTALEKVLRNEDLQGAPLLILANKQDLPD--AVSADELARYLDLKKLDERVCMFEAVSGYDGFGIKESVEWLVEVM 172 (192)
Q Consensus 95 ~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~e~~~~i~~~i 172 (192)
|..+..|++++...++ ..|-++||||.|+++ .+..++++.++. ..++.+||+|||...|++..|.-|.+++
T Consensus 96 F~Nv~rWLeei~~ncd--sv~~vLVGNK~d~~~RrvV~t~dAr~~A~-----~mgie~FETSaKe~~NvE~mF~cit~qv 168 (198)
T KOG0079|consen 96 FNNVKRWLEEIRNNCD--SVPKVLVGNKNDDPERRVVDTEDARAFAL-----QMGIELFETSAKENENVEAMFHCITKQV 168 (198)
T ss_pred hHhHHHHHHHHHhcCc--cccceecccCCCCccceeeehHHHHHHHH-----hcCchheehhhhhcccchHHHHHHHHHH
Confidence 9999999999999874 789999999999987 678899999998 8899999999999999999999999887
Q ss_pred Hhcc
Q 029517 173 ERSK 176 (192)
Q Consensus 173 ~~~~ 176 (192)
...+
T Consensus 169 l~~k 172 (198)
T KOG0079|consen 169 LQAK 172 (198)
T ss_pred HHHH
Confidence 7655
No 22
>smart00176 RAN Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran is involved in the active transport of proteins through nuclear pores.
Probab=99.95 E-value=1.2e-26 Score=172.17 Aligned_cols=134 Identities=16% Similarity=0.384 Sum_probs=112.9
Q ss_pred CCCCCCCCCCcceEEEEE----EecCEEEEEEeCCCCcccHHHHHHhhhcCCEEEEEEeCCCcccHHHHHHHHHHHHhCC
Q 029517 34 GLPPDRIVPTVGLNIGRI----EVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNE 109 (192)
Q Consensus 34 ~~~~~~~~~T~g~~~~~~----~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ii~v~D~~~~~s~~~~~~~~~~i~~~~ 109 (192)
+.+...|.||+|.++... +...+++.||||+|+++|..++..|+++++++|+|||+++..+|+.+..|+..+.+..
T Consensus 18 ~~f~~~~~~Tig~~~~~~~~~~~~~~~~l~iwDt~G~e~~~~l~~~~~~~ad~~ilV~D~t~~~S~~~i~~w~~~i~~~~ 97 (200)
T smart00176 18 GEFEKKYVATLGVEVHPLVFHTNRGPIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTARVTYKNVPNWHRDLVRVC 97 (200)
T ss_pred CCCCCCCCCceeEEEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHhcCCCEEEEEEECCChHHHHHHHHHHHHHHHhC
Confidence 567778899999888643 2346899999999999999999999999999999999999999999999999998764
Q ss_pred CCCCCcEEEEEeCCCCCC-CCCHHHHHhHcCccccCCcceEEEEeeecCCCCHHHHHHHHHHHHHhc
Q 029517 110 DLQGAPLLILANKQDLPD-AVSADELARYLDLKKLDERVCMFEAVSGYDGFGIKESVEWLVEVMERS 175 (192)
Q Consensus 110 ~~~~~piiiv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~e~~~~i~~~i~~~ 175 (192)
.++|+++|+||+|+.. .+..+. .+++. ..++.|++|||++|.||+++|++|.+.+.+.
T Consensus 98 --~~~piilvgNK~Dl~~~~v~~~~-~~~~~-----~~~~~~~e~SAk~~~~v~~~F~~l~~~i~~~ 156 (200)
T smart00176 98 --ENIPIVLCGNKVDVKDRKVKAKS-ITFHR-----KKNLQYYDISAKSNYNFEKPFLWLARKLIGD 156 (200)
T ss_pred --CCCCEEEEEECcccccccCCHHH-HHHHH-----HcCCEEEEEeCCCCCCHHHHHHHHHHHHHhc
Confidence 4799999999999865 333333 23433 4568999999999999999999999988664
No 23
>KOG0086 consensus GTPase Rab4, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.95 E-value=5.1e-27 Score=161.10 Aligned_cols=155 Identities=23% Similarity=0.308 Sum_probs=134.3
Q ss_pred cccHHHHHHHHhhhhccCCCCCCCCCCCCcceEEEE----EEecCEEEEEEeCCCCcccHHHHHHhhhcCCEEEEEEeCC
Q 029517 15 KTEFHTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGR----IEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAA 90 (192)
Q Consensus 15 st~~~~l~~~~~~~~~~~~~~~~~~~~~T~g~~~~~----~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ii~v~D~~ 90 (192)
-|.-.+|+.++.. +.+.+....|+|+++.. +.++.++++||||+|+++|+.....|++++.+.++|||++
T Consensus 19 GtGKSCLLh~Fie------~kfkDdssHTiGveFgSrIinVGgK~vKLQIWDTAGQErFRSVtRsYYRGAAGAlLVYD~T 92 (214)
T KOG0086|consen 19 GTGKSCLLHQFIE------NKFKDDSSHTIGVEFGSRIVNVGGKTVKLQIWDTAGQERFRSVTRSYYRGAAGALLVYDIT 92 (214)
T ss_pred CCChhHHHHHHHH------hhhcccccceeeeeecceeeeecCcEEEEEEeecccHHHHHHHHHHHhccccceEEEEecc
Confidence 4455688888877 78888889999999985 3446789999999999999999999999999999999999
Q ss_pred CcccHHHHHHHHHHHHhCCCCCCCcEEEEEeCCCCCC--CCCHHHHHhHcCccccCCcceEEEEeeecCCCCHHHHHHHH
Q 029517 91 CPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPD--AVSADELARYLDLKKLDERVCMFEAVSGYDGFGIKESVEWL 168 (192)
Q Consensus 91 ~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~e~~~~i 168 (192)
+.++|+.+-.|+..+..... +++-+++++||.||.+ +++..++.+++. .+...+.++||++|.||+|+|-..
T Consensus 93 srdsfnaLtnWL~DaR~lAs-~nIvviL~GnKkDL~~~R~VtflEAs~Faq-----Enel~flETSa~TGeNVEEaFl~c 166 (214)
T KOG0086|consen 93 SRDSFNALTNWLTDARTLAS-PNIVVILCGNKKDLDPEREVTFLEASRFAQ-----ENELMFLETSALTGENVEEAFLKC 166 (214)
T ss_pred chhhHHHHHHHHHHHHhhCC-CcEEEEEeCChhhcChhhhhhHHHHHhhhc-----ccceeeeeecccccccHHHHHHHH
Confidence 99999999999999887643 6788999999999987 788889999998 667899999999999999999999
Q ss_pred HHHHHhcchhhhh
Q 029517 169 VEVMERSKRTEML 181 (192)
Q Consensus 169 ~~~i~~~~~~~~~ 181 (192)
.+.+........+
T Consensus 167 ~~tIl~kIE~GEl 179 (214)
T KOG0086|consen 167 ARTILNKIESGEL 179 (214)
T ss_pred HHHHHHHHhhcCC
Confidence 8888755443333
No 24
>KOG0076 consensus GTP-binding ADP-ribosylation factor-like protein yARL3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.95 E-value=2e-27 Score=166.22 Aligned_cols=175 Identities=54% Similarity=0.918 Sum_probs=155.9
Q ss_pred ChhhhHHHHhhhhccccHH------------HHHHHHhhhhc-cCCCCCCCCCCCCcceEEEEEEecCEEEEEEeCCCCc
Q 029517 1 MFSLFYGLWKYIFTKTEFH------------TLLEKLKSVYS-NVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQP 67 (192)
Q Consensus 1 ~~~~~~~~~~~~~kst~~~------------~l~~~~~~~~~-~~~~~~~~~~~~T~g~~~~~~~~~~~~~~i~D~~G~~ 67 (192)
||+|++++|+.+||..-++ |++.+.+..+. ...+-.+....||.|.+.+++......+.+||.+|++
T Consensus 1 m~tl~~gl~~~~~~Ke~y~vlIlgldnAGKttfLe~~Kt~~~~~~~~l~~~ki~~tvgLnig~i~v~~~~l~fwdlgGQe 80 (197)
T KOG0076|consen 1 MFTLMSGLYKYMFKKEDYSVLILGLDNAGKTTFLEALKTDFSKAYGGLNPSKITPTVGLNIGTIEVCNAPLSFWDLGGQE 80 (197)
T ss_pred ChhHHHHHHHHHhhhhhhhheeeccccCCchhHHHHHHHHHHhhhcCCCHHHeecccceeecceeeccceeEEEEcCChH
Confidence 9999999999999999887 77877777655 4445556788999999999999888899999999999
Q ss_pred ccHHHHHHhhhcCCEEEEEEeCCCcccHHHHHHHHHHHHhCCCCCCCcEEEEEeCCCCCCCCCHHHHHhHcCc-cccCCc
Q 029517 68 GLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAVSADELARYLDL-KKLDER 146 (192)
Q Consensus 68 ~~~~~~~~~~~~~d~ii~v~D~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~-~~~~~~ 146 (192)
..++.|..|+..|+++|+++|+++++.|++....++.+.......+.|+++.+||.|+.++.+..++...+.+ ..+...
T Consensus 81 ~lrSlw~~yY~~~H~ii~viDa~~~eR~~~~~t~~~~v~~~E~leg~p~L~lankqd~q~~~~~~El~~~~~~~e~~~~r 160 (197)
T KOG0076|consen 81 SLRSLWKKYYWLAHGIIYVIDATDRERFEESKTAFEKVVENEKLEGAPVLVLANKQDLQNAMEAAELDGVFGLAELIPRR 160 (197)
T ss_pred HHHHHHHHHHHHhceeEEeecCCCHHHHHHHHHHHHHHHHHHHhcCCchhhhcchhhhhhhhhHHHHHHHhhhhhhcCCc
Confidence 9999999999999999999999999999999999999888766689999999999999998888888888873 333456
Q ss_pred ceEEEEeeecCCCCHHHHHHHHHHHHHhc
Q 029517 147 VCMFEAVSGYDGFGIKESVEWLVEVMERS 175 (192)
Q Consensus 147 ~~~~~~~Sa~~~~gi~e~~~~i~~~i~~~ 175 (192)
..++.++||.+|.||+|..+|++..+.++
T Consensus 161 d~~~~pvSal~gegv~egi~w~v~~~~kn 189 (197)
T KOG0076|consen 161 DNPFQPVSALTGEGVKEGIEWLVKKLEKN 189 (197)
T ss_pred cCccccchhhhcccHHHHHHHHHHHHhhc
Confidence 78899999999999999999999999887
No 25
>PTZ00099 rab6; Provisional
Probab=99.95 E-value=1.4e-26 Score=168.62 Aligned_cols=136 Identities=22% Similarity=0.361 Sum_probs=116.2
Q ss_pred CCCCCCCCCCcceEEEE----EEecCEEEEEEeCCCCcccHHHHHHhhhcCCEEEEEEeCCCcccHHHHHHHHHHHHhCC
Q 029517 34 GLPPDRIVPTVGLNIGR----IEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNE 109 (192)
Q Consensus 34 ~~~~~~~~~T~g~~~~~----~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ii~v~D~~~~~s~~~~~~~~~~i~~~~ 109 (192)
+.|.+.|.||+|.++.. +++..+++.||||||++++...+..+++++|++|+|||++++.+|+.+..|+..+....
T Consensus 3 ~~F~~~~~~Tig~~~~~~~~~~~~~~v~l~iwDt~G~e~~~~~~~~~~~~ad~~ilv~D~t~~~sf~~~~~w~~~i~~~~ 82 (176)
T PTZ00099 3 DTFDNNYQSTIGIDFLSKTLYLDEGPVRLQLWDTAGQERFRSLIPSYIRDSAAAIVVYDITNRQSFENTTKWIQDILNER 82 (176)
T ss_pred CCcCCCCCCccceEEEEEEEEECCEEEEEEEEECCChHHhhhccHHHhCCCcEEEEEEECCCHHHHHHHHHHHHHHHHhc
Confidence 56788899999988863 33456899999999999999999999999999999999999999999999999987653
Q ss_pred CCCCCcEEEEEeCCCCCC--CCCHHHHHhHcCccccCCcceEEEEeeecCCCCHHHHHHHHHHHHHhc
Q 029517 110 DLQGAPLLILANKQDLPD--AVSADELARYLDLKKLDERVCMFEAVSGYDGFGIKESVEWLVEVMERS 175 (192)
Q Consensus 110 ~~~~~piiiv~nK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~e~~~~i~~~i~~~ 175 (192)
. .+.|+++|+||+|+.. .+..+++..++. ..+..++++||++|.||+++|++|.+.+.+.
T Consensus 83 ~-~~~piilVgNK~DL~~~~~v~~~e~~~~~~-----~~~~~~~e~SAk~g~nV~~lf~~l~~~l~~~ 144 (176)
T PTZ00099 83 G-KDVIIALVGNKTDLGDLRKVTYEEGMQKAQ-----EYNTMFHETSAKAGHNIKVLFKKIAAKLPNL 144 (176)
T ss_pred C-CCCeEEEEEECcccccccCCCHHHHHHHHH-----HcCCEEEEEECCCCCCHHHHHHHHHHHHHhc
Confidence 2 4789999999999964 456667766665 4467899999999999999999999988653
No 26
>cd04172 Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight
Probab=99.95 E-value=1.4e-26 Score=169.63 Aligned_cols=141 Identities=21% Similarity=0.278 Sum_probs=117.9
Q ss_pred HHHHHHhhhhccCCCCCCCCCCCCcceEEEE---EEecCEEEEEEeCCCCcccHHHHHHhhhcCCEEEEEEeCCCcccHH
Q 029517 20 TLLEKLKSVYSNVEGLPPDRIVPTVGLNIGR---IEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFE 96 (192)
Q Consensus 20 ~l~~~~~~~~~~~~~~~~~~~~~T~g~~~~~---~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ii~v~D~~~~~s~~ 96 (192)
+|+.|+.. +.|...|.||++..+.. ++...+.+++|||+|+++|...+..+++++|++|+|||++++.+|+
T Consensus 20 sli~~~~~------~~f~~~~~pT~~~~~~~~~~~~~~~~~l~iwDtaG~e~~~~~~~~~~~~ad~~ilvyDit~~~Sf~ 93 (182)
T cd04172 20 ALLHVFAK------DCFPENYVPTVFENYTASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVLICFDISRPETLD 93 (182)
T ss_pred HHHHHHHh------CCCCCccCCceeeeeEEEEEECCEEEEEEEEECCCchhhHhhhhhhcCCCCEEEEEEECCCHHHHH
Confidence 44445554 66778899999977652 3445689999999999999999999999999999999999999999
Q ss_pred HH-HHHHHHHHhCCCCCCCcEEEEEeCCCCCC--------------CCCHHHHHhHcCccccCCcc-eEEEEeeecCCCC
Q 029517 97 DS-KTALEKVLRNEDLQGAPLLILANKQDLPD--------------AVSADELARYLDLKKLDERV-CMFEAVSGYDGFG 160 (192)
Q Consensus 97 ~~-~~~~~~i~~~~~~~~~piiiv~nK~Dl~~--------------~~~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~g 160 (192)
.+ ..|+..+.+.. .+.|+++||||+|+.+ .++.++..++++ ..+ .+|+||||++|.|
T Consensus 94 ~~~~~w~~~i~~~~--~~~piilVgNK~DL~~~~~~~~~~~~~~~~~v~~~~~~~~a~-----~~~~~~~~E~SAk~~~n 166 (182)
T cd04172 94 SVLKKWKGEIQEFC--PNTKMLLVGCKSDLRTDLTTLVELSNHRQTPVSYDQGANMAK-----QIGAATYIECSALQSEN 166 (182)
T ss_pred HHHHHHHHHHHHHC--CCCCEEEEeEChhhhcChhhHHHHHhcCCCCCCHHHHHHHHH-----HcCCCEEEECCcCCCCC
Confidence 97 78999887764 4789999999999853 377788888886 556 4899999999998
Q ss_pred -HHHHHHHHHHHHH
Q 029517 161 -IKESVEWLVEVME 173 (192)
Q Consensus 161 -i~e~~~~i~~~i~ 173 (192)
|+++|+.+.+.+.
T Consensus 167 ~v~~~F~~~~~~~~ 180 (182)
T cd04172 167 SVRDIFHVATLACV 180 (182)
T ss_pred CHHHHHHHHHHHHh
Confidence 9999999988643
No 27
>cd04154 Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis.
Probab=99.95 E-value=2.6e-26 Score=166.91 Aligned_cols=146 Identities=39% Similarity=0.708 Sum_probs=120.1
Q ss_pred ccccHHHHHHHHhhhhccCCCCCCCCCCCCcceEEEEEEecCEEEEEEeCCCCcccHHHHHHhhhcCCEEEEEEeCCCcc
Q 029517 14 TKTEFHTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPS 93 (192)
Q Consensus 14 kst~~~~l~~~~~~~~~~~~~~~~~~~~~T~g~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ii~v~D~~~~~ 93 (192)
|||++++|+++ +...+.||+|..+..+..+.+.+.+||+||++.++..+..+++++|++++|+|++++.
T Consensus 27 KTsL~~~l~~~-----------~~~~~~~t~g~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~ 95 (173)
T cd04154 27 KTTILKKLLGE-----------DIDTISPTLGFQIKTLEYEGYKLNIWDVGGQKTLRPYWRNYFESTDALIWVVDSSDRL 95 (173)
T ss_pred HHHHHHHHccC-----------CCCCcCCccccceEEEEECCEEEEEEECCCCHHHHHHHHHHhCCCCEEEEEEECCCHH
Confidence 56666555432 2345788999877777777899999999999999999999999999999999999999
Q ss_pred cHHHHHHHHHHHHhCCCCCCCcEEEEEeCCCCCCCCCHHHHHhHcCccccCCcceEEEEeeecCCCCHHHHHHHHHH
Q 029517 94 RFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAVSADELARYLDLKKLDERVCMFEAVSGYDGFGIKESVEWLVE 170 (192)
Q Consensus 94 s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~e~~~~i~~ 170 (192)
++..+..|+..+.......++|+++|+||+|+.+....+++.+.+++.......++++++||++|.|++++|+++.+
T Consensus 96 s~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~ 172 (173)
T cd04154 96 RLDDCKRELKELLQEERLAGATLLILANKQDLPGALSEEEIREALELDKISSHHWRIQPCSAVTGEGLLQGIDWLVD 172 (173)
T ss_pred HHHHHHHHHHHHHhChhhcCCCEEEEEECcccccCCCHHHHHHHhCccccCCCceEEEeccCCCCcCHHHHHHHHhc
Confidence 99999889888876433357999999999999876677778777764333456789999999999999999999864
No 28
>cd04174 Rnd1_Rho6 Rnd1/Rho6 subfamily. Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.95 E-value=2.8e-26 Score=173.33 Aligned_cols=143 Identities=19% Similarity=0.285 Sum_probs=119.9
Q ss_pred HHHHHHhhhhccCCCCCCCCCCCCcceEEEE---EEecCEEEEEEeCCCCcccHHHHHHhhhcCCEEEEEEeCCCcccHH
Q 029517 20 TLLEKLKSVYSNVEGLPPDRIVPTVGLNIGR---IEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFE 96 (192)
Q Consensus 20 ~l~~~~~~~~~~~~~~~~~~~~~T~g~~~~~---~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ii~v~D~~~~~s~~ 96 (192)
+|+.++.. +.|...|.||+|.++.. +++..+.++||||+|+++|...+..+++++|++|+|||++++++|+
T Consensus 28 sLi~r~~~------~~F~~~y~pTi~~~~~~~i~~~~~~v~l~iwDTaG~e~~~~~~~~~~~~ad~vIlVyDit~~~Sf~ 101 (232)
T cd04174 28 AMLQVLAK------DCYPETYVPTVFENYTAGLETEEQRVELSLWDTSGSPYYDNVRPLCYSDSDAVLLCFDISRPETVD 101 (232)
T ss_pred HHHHHHhc------CCCCCCcCCceeeeeEEEEEECCEEEEEEEEeCCCchhhHHHHHHHcCCCcEEEEEEECCChHHHH
Confidence 45555555 67788899999987753 3445689999999999999999999999999999999999999999
Q ss_pred HH-HHHHHHHHhCCCCCCCcEEEEEeCCCCCC--------------CCCHHHHHhHcCccccCCcce-EEEEeeecCCC-
Q 029517 97 DS-KTALEKVLRNEDLQGAPLLILANKQDLPD--------------AVSADELARYLDLKKLDERVC-MFEAVSGYDGF- 159 (192)
Q Consensus 97 ~~-~~~~~~i~~~~~~~~~piiiv~nK~Dl~~--------------~~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~- 159 (192)
.+ ..|+..+.+.. .+.|+++|+||+|+.+ .++.+++.++++ ..++ .|++|||++|.
T Consensus 102 ~~~~~w~~~i~~~~--~~~piilVgNK~DL~~~~~~~~~l~~~~~~~Vs~~e~~~~a~-----~~~~~~~~EtSAktg~~ 174 (232)
T cd04174 102 SALKKWKAEIMDYC--PSTRILLIGCKTDLRTDLSTLMELSNQKQAPISYEQGCALAK-----QLGAEVYLECSAFTSEK 174 (232)
T ss_pred HHHHHHHHHHHHhC--CCCCEEEEEECcccccccchhhhhccccCCcCCHHHHHHHHH-----HcCCCEEEEccCCcCCc
Confidence 84 88999888754 4789999999999852 467788888887 5566 69999999997
Q ss_pred CHHHHHHHHHHHHHhc
Q 029517 160 GIKESVEWLVEVMERS 175 (192)
Q Consensus 160 gi~e~~~~i~~~i~~~ 175 (192)
||+++|+.++..+.+.
T Consensus 175 ~V~e~F~~~~~~~~~~ 190 (232)
T cd04174 175 SIHSIFRSASLLCLNK 190 (232)
T ss_pred CHHHHHHHHHHHHHHh
Confidence 8999999999887654
No 29
>cd04160 Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.
Probab=99.95 E-value=4.4e-26 Score=164.43 Aligned_cols=153 Identities=56% Similarity=0.972 Sum_probs=128.1
Q ss_pred ccccHHHHHHHHhhhhccCCCCCCCCCCCCcceEEEEEEecCEEEEEEeCCCCcccHHHHHHhhhcCCEEEEEEeCCCcc
Q 029517 14 TKTEFHTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPS 93 (192)
Q Consensus 14 kst~~~~l~~~~~~~~~~~~~~~~~~~~~T~g~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ii~v~D~~~~~ 93 (192)
|||++|+|.++.. ..++.+.+.+.||++.++..+..++..+.+|||||++.+...+..+++.+|++++|+|+++++
T Consensus 12 KstLi~~l~~~~~----~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~v~vvd~~~~~ 87 (167)
T cd04160 12 KTTFLEQLKTLFS----KYKGLPPSKITPTVGLNIGTIEVGNARLKFWDLGGQESLRSLWDKYYAECHAIIYVIDSTDRE 87 (167)
T ss_pred HHHHHHHHhhhcc----cccCCcccccCCccccceEEEEECCEEEEEEECCCChhhHHHHHHHhCCCCEEEEEEECchHH
Confidence 7888888776532 234566778899999999988888899999999999999999999999999999999999988
Q ss_pred cHHHHHHHHHHHHhCCCCCCCcEEEEEeCCCCCCCCCHHHHHhHcCccc--cCCcceEEEEeeecCCCCHHHHHHHHHH
Q 029517 94 RFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAVSADELARYLDLKK--LDERVCMFEAVSGYDGFGIKESVEWLVE 170 (192)
Q Consensus 94 s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~--~~~~~~~~~~~Sa~~~~gi~e~~~~i~~ 170 (192)
++.....++..+.+.....+.|+++++||+|+......+++.+.++... ......+++++||++|.|++++++||++
T Consensus 88 ~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~e~~~~l~~ 166 (167)
T cd04160 88 RFEESKSALEKVLRNEALEGVPLLILANKQDLPDALSVEEIKEVFQDKAEEIGRRDCLVLPVSALEGTGVREGIEWLVE 166 (167)
T ss_pred HHHHHHHHHHHHHhChhhcCCCEEEEEEccccccCCCHHHHHHHhccccccccCCceEEEEeeCCCCcCHHHHHHHHhc
Confidence 8999989988887764446799999999999988777777777765221 2234678999999999999999999975
No 30
>KOG0080 consensus GTPase Rab18, small G protein superfamily [General function prediction only]
Probab=99.95 E-value=5.1e-27 Score=162.23 Aligned_cols=145 Identities=22% Similarity=0.324 Sum_probs=130.5
Q ss_pred HHHHHHhhhhccCCCCCCCCCCCCcceEEEE----EEecCEEEEEEeCCCCcccHHHHHHhhhcCCEEEEEEeCCCcccH
Q 029517 20 TLLEKLKSVYSNVEGLPPDRIVPTVGLNIGR----IEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRF 95 (192)
Q Consensus 20 ~l~~~~~~~~~~~~~~~~~~~~~T~g~~~~~----~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ii~v~D~~~~~s~ 95 (192)
+|+-++.. +.|.+....|||+++.. +++..+++-||||+|+++|+.+...|++++.++|+|||++..++|
T Consensus 26 SLllrFv~------~~fd~~~~~tIGvDFkvk~m~vdg~~~KlaiWDTAGqErFRtLTpSyyRgaqGiIlVYDVT~Rdtf 99 (209)
T KOG0080|consen 26 SLLLRFVS------NTFDDLHPTTIGVDFKVKVMQVDGKRLKLAIWDTAGQERFRTLTPSYYRGAQGIILVYDVTSRDTF 99 (209)
T ss_pred HHHHHHHh------cccCccCCceeeeeEEEEEEEEcCceEEEEEEeccchHhhhccCHhHhccCceeEEEEEccchhhH
Confidence 55556665 77778878889999873 566788999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhCCCCCCCcEEEEEeCCCCC--CCCCHHHHHhHcCccccCCcceEEEEeeecCCCCHHHHHHHHHHHHH
Q 029517 96 EDSKTALEKVLRNEDLQGAPLLILANKQDLP--DAVSADELARYLDLKKLDERVCMFEAVSGYDGFGIKESVEWLVEVME 173 (192)
Q Consensus 96 ~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~--~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~e~~~~i~~~i~ 173 (192)
..+..|++.+..++...++-.++|+||+|.. ..++.++...++. .+.+-|+|+||++.+||+.+|+++++.+.
T Consensus 100 ~kLd~W~~Eld~Ystn~diikmlVgNKiDkes~R~V~reEG~kfAr-----~h~~LFiE~SAkt~~~V~~~FeelveKIi 174 (209)
T KOG0080|consen 100 VKLDIWLKELDLYSTNPDIIKMLVGNKIDKESERVVDREEGLKFAR-----KHRCLFIECSAKTRENVQCCFEELVEKII 174 (209)
T ss_pred HhHHHHHHHHHhhcCCccHhHhhhcccccchhcccccHHHHHHHHH-----hhCcEEEEcchhhhccHHHHHHHHHHHHh
Confidence 9999999999998887899999999999987 3789999999998 88999999999999999999999999887
Q ss_pred hc
Q 029517 174 RS 175 (192)
Q Consensus 174 ~~ 175 (192)
+-
T Consensus 175 ~t 176 (209)
T KOG0080|consen 175 ET 176 (209)
T ss_pred cC
Confidence 53
No 31
>cd04126 Rab20 Rab20 subfamily. Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bo
Probab=99.94 E-value=6.6e-26 Score=170.31 Aligned_cols=160 Identities=17% Similarity=0.229 Sum_probs=124.3
Q ss_pred ccccHHHHHHHHhhhhccCCCCCCCCCCCCcceEEEEEEecCEEEEEEeCCCCcccHHHHHHhhhcCCEEEEEEeCCCcc
Q 029517 14 TKTEFHTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPS 93 (192)
Q Consensus 14 kst~~~~l~~~~~~~~~~~~~~~~~~~~~T~g~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ii~v~D~~~~~ 93 (192)
|||++++++ . +.+.. +.||+|..+.......+.+.+|||+|++.|...+..+++++|++|+|||+++++
T Consensus 13 KTSLi~r~~----~------~~f~~-~~~Tig~~~~~~~~~~~~l~iwDt~G~e~~~~l~~~~~~~ad~~IlV~Dvt~~~ 81 (220)
T cd04126 13 KTSLLHRYM----E------RRFKD-TVSTVGGAFYLKQWGPYNISIWDTAGREQFHGLGSMYCRGAAAVILTYDVSNVQ 81 (220)
T ss_pred HHHHHHHHh----c------CCCCC-CCCccceEEEEEEeeEEEEEEEeCCCcccchhhHHHHhccCCEEEEEEECCCHH
Confidence 566666654 3 44443 588999887766667789999999999999999999999999999999999999
Q ss_pred cHHHHHHHHHHHHhCCCCCCCcEEEEEeCCCCCC---------------------CCCHHHHHhHcCcccc---------
Q 029517 94 RFEDSKTALEKVLRNEDLQGAPLLILANKQDLPD---------------------AVSADELARYLDLKKL--------- 143 (192)
Q Consensus 94 s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~---------------------~~~~~~~~~~~~~~~~--------- 143 (192)
+|+.+..|+..+.+.. ..+.|+++|+||+|+.+ .++.+++.++++....
T Consensus 82 Sf~~l~~~~~~l~~~~-~~~~piIlVgNK~DL~~~~~~~~~~~~~~~~~~~~~~r~v~~~e~~~~a~~~~~~~~~~~~~~ 160 (220)
T cd04126 82 SLEELEDRFLGLTDTA-NEDCLFAVVGNKLDLTEEGALAGQEKDAGDRVSPEDQRQVTLEDAKAFYKRINKYKMLDEDLS 160 (220)
T ss_pred HHHHHHHHHHHHHHhc-CCCCcEEEEEECcccccccccccccccccccccccccccCCHHHHHHHHHHhCcccccccccc
Confidence 9999999988887643 25789999999999853 4556777777651100
Q ss_pred CCcceEEEEeeecCCCCHHHHHHHHHHHHHhcchhhhhhhhc
Q 029517 144 DERVCMFEAVSGYDGFGIKESVEWLVEVMERSKRTEMLRARA 185 (192)
Q Consensus 144 ~~~~~~~~~~Sa~~~~gi~e~~~~i~~~i~~~~~~~~~~~~~ 185 (192)
....++|+||||++|.||+++|+++.+.+......+..++++
T Consensus 161 ~~~~~~~~E~SA~tg~~V~elf~~i~~~~~~~~~~~~~~~~~ 202 (220)
T cd04126 161 PAAEKMCFETSAKTGYNVDELFEYLFNLVLPLILAQRAEANR 202 (220)
T ss_pred ccccceEEEeeCCCCCCHHHHHHHHHHHHHHHHHhhhhhhhh
Confidence 011268999999999999999999999887665444444443
No 32
>KOG0087 consensus GTPase Rab11/YPT3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.94 E-value=1.1e-26 Score=167.53 Aligned_cols=155 Identities=21% Similarity=0.361 Sum_probs=137.4
Q ss_pred hhhhccccH-------HHHHHHHhhhhccCCCCCCCCCCCCcceEEEE----EEecCEEEEEEeCCCCcccHHHHHHhhh
Q 029517 10 KYIFTKTEF-------HTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGR----IEVSNSKLVFWDLGGQPGLRSIWEKYYE 78 (192)
Q Consensus 10 ~~~~kst~~-------~~l~~~~~~~~~~~~~~~~~~~~~T~g~~~~~----~~~~~~~~~i~D~~G~~~~~~~~~~~~~ 78 (192)
-++||..++ .-|+.|++. +.|...-.+|||+++.+ ++++.++.+||||+||++|+.....|++
T Consensus 12 dylFKiVliGDS~VGKsnLlsRftr------nEF~~~SksTIGvef~t~t~~vd~k~vkaqIWDTAGQERyrAitSaYYr 85 (222)
T KOG0087|consen 12 DYLFKIVLIGDSAVGKSNLLSRFTR------NEFSLESKSTIGVEFATRTVNVDGKTVKAQIWDTAGQERYRAITSAYYR 85 (222)
T ss_pred ceEEEEEEeCCCccchhHHHHHhcc------cccCcccccceeEEEEeeceeecCcEEEEeeecccchhhhccccchhhc
Confidence 345665555 367888887 99999999999999986 5567789999999999999999999999
Q ss_pred cCCEEEEEEeCCCcccHHHHHHHHHHHHhCCCCCCCcEEEEEeCCCCCC--CCCHHHHHhHcCccccCCcceEEEEeeec
Q 029517 79 EAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPD--AVSADELARYLDLKKLDERVCMFEAVSGY 156 (192)
Q Consensus 79 ~~d~ii~v~D~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 156 (192)
++-|+++|||++...+|+.+..|+.+++...+ +++++++||||+||.. ++..++...+++ ..+..++++||.
T Consensus 86 gAvGAllVYDITr~~Tfenv~rWL~ELRdhad-~nivimLvGNK~DL~~lraV~te~~k~~Ae-----~~~l~f~EtSAl 159 (222)
T KOG0087|consen 86 GAVGALLVYDITRRQTFENVERWLKELRDHAD-SNIVIMLVGNKSDLNHLRAVPTEDGKAFAE-----KEGLFFLETSAL 159 (222)
T ss_pred ccceeEEEEechhHHHHHHHHHHHHHHHhcCC-CCeEEEEeecchhhhhccccchhhhHhHHH-----hcCceEEEeccc
Confidence 99999999999999999999999999998765 6899999999999976 788889988887 668899999999
Q ss_pred CCCCHHHHHHHHHHHHHhcc
Q 029517 157 DGFGIKESVEWLVEVMERSK 176 (192)
Q Consensus 157 ~~~gi~e~~~~i~~~i~~~~ 176 (192)
.+.||+++|+.+...+.+.-
T Consensus 160 ~~tNVe~aF~~~l~~I~~~v 179 (222)
T KOG0087|consen 160 DATNVEKAFERVLTEIYKIV 179 (222)
T ss_pred ccccHHHHHHHHHHHHHHHH
Confidence 99999999999998887654
No 33
>cd04107 Rab32_Rab38 Rab38/Rab32 subfamily. Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.94 E-value=9e-26 Score=167.92 Aligned_cols=148 Identities=24% Similarity=0.380 Sum_probs=121.4
Q ss_pred ccccHHHHHHHHhhhhccCCCCCCCCCCCCcceEEEE--EE---ecCEEEEEEeCCCCcccHHHHHHhhhcCCEEEEEEe
Q 029517 14 TKTEFHTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGR--IE---VSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVID 88 (192)
Q Consensus 14 kst~~~~l~~~~~~~~~~~~~~~~~~~~~T~g~~~~~--~~---~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ii~v~D 88 (192)
|||++++|++ +.+...+.||+|.++.. +. +..+.+.+|||||+++|...+..++++++++|+|||
T Consensus 13 KTsli~~l~~----------~~~~~~~~~t~~~d~~~~~v~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~a~~~ilv~D 82 (201)
T cd04107 13 KTSIIKRYVH----------GIFSQHYKATIGVDFALKVIEWDPNTVVRLQLWDIAGQERFGGMTRVYYRGAVGAIIVFD 82 (201)
T ss_pred HHHHHHHHHc----------CCCCCCCCCceeEEEEEEEEEECCCCEEEEEEEECCCchhhhhhHHHHhCCCCEEEEEEE
Confidence 6666666653 44566789999977642 33 346789999999999999999999999999999999
Q ss_pred CCCcccHHHHHHHHHHHHhCC---CCCCCcEEEEEeCCCCC--CCCCHHHHHhHcCccccCCcc-eEEEEeeecCCCCHH
Q 029517 89 AACPSRFEDSKTALEKVLRNE---DLQGAPLLILANKQDLP--DAVSADELARYLDLKKLDERV-CMFEAVSGYDGFGIK 162 (192)
Q Consensus 89 ~~~~~s~~~~~~~~~~i~~~~---~~~~~piiiv~nK~Dl~--~~~~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~gi~ 162 (192)
++++++|+.+..|+..+.... ...++|+++|+||+|+. .....+++.++++ ..+ ..++++||++|.||+
T Consensus 83 ~t~~~s~~~~~~~~~~i~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~e~Sak~~~~v~ 157 (201)
T cd04107 83 VTRPSTFEAVLKWKADLDSKVTLPNGEPIPCLLLANKCDLKKRLAKDGEQMDQFCK-----ENGFIGWFETSAKEGINIE 157 (201)
T ss_pred CCCHHHHHHHHHHHHHHHHhhcccCCCCCcEEEEEECCCcccccccCHHHHHHHHH-----HcCCceEEEEeCCCCCCHH
Confidence 999999999999988876532 12578999999999997 4677788888876 334 689999999999999
Q ss_pred HHHHHHHHHHHhcc
Q 029517 163 ESVEWLVEVMERSK 176 (192)
Q Consensus 163 e~~~~i~~~i~~~~ 176 (192)
++|++|.+.+.+..
T Consensus 158 e~f~~l~~~l~~~~ 171 (201)
T cd04107 158 EAMRFLVKNILAND 171 (201)
T ss_pred HHHHHHHHHHHHhc
Confidence 99999999887654
No 34
>PF00025 Arf: ADP-ribosylation factor family The prints entry specific to Sar1 proteins The Prosite entry specific to Sar1 proteins; InterPro: IPR006689 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. This entry represents a branch of the small GTPase superfamily that includes the ADP ribosylation factor Arf, Arl (Arf-like), Arp (Arf-related proteins) and the remotely related Sar (Secretion-associated and Ras-related) proteins. Arf proteins are major regulators of vesicle biogenesis in intracellular traffic []. They cycle between inactive GDP-bound and active GTP-bound forms that bind selectively to effectors. The classical structural GDP/GTP switch is characterised by conformational changes at the so-called switch 1 and switch 2 regions, which bind tightly to the gamma-phosphate of GTP but poorly or not at all to the GDP nucleotide. Structural studies of Arf1 and Arf6 have revealed that although these proteins feature the switch 1 and 2 conformational changes, they depart from other small GTP-binding proteins in that they use an additional, unique switch to propagate structural information from one side of the protein to the other. The GDP/GTP structural cycles of human Arf1 and Arf6 feature a unique conformational change that affects the beta2-beta3 strands connecting switch 1 and switch 2 (interswitch) and also the amphipathic helical N terminus. In GDP-bound Arf1 and Arf6, the interswitch is retracted and forms a pocket to which the N-terminal helix binds, the latter serving as a molecular hasp to maintain the inactive conformation. In the GTP-bound form of these proteins, the interswitch undergoes a two-residue register shift that pulls switch 1 and switch 2 up, restoring an active conformation that can bind GTP. In this conformation, the interswitch projects out of the protein and extrudes the N-terminal hasp by occluding its binding pocket.; GO: 0005525 GTP binding; PDB: 2H57_B 2W83_B 3N5C_B 2J5X_A 3LVR_E 2BAO_A 3LVQ_E 2A5F_A 3PCR_B 1E0S_A ....
Probab=99.94 E-value=3.2e-26 Score=166.79 Aligned_cols=146 Identities=42% Similarity=0.818 Sum_probs=130.6
Q ss_pred HHHHHHhhhhccCCCCCCCCCCCCcceEEEEEEecCEEEEEEeCCCCcccHHHHHHhhhcCCEEEEEEeCCCcccHHHHH
Q 029517 20 TLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSK 99 (192)
Q Consensus 20 ~l~~~~~~~~~~~~~~~~~~~~~T~g~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ii~v~D~~~~~s~~~~~ 99 (192)
||++++.. +. ...+.||.|.+...+...++.+.+||++|+..++..|..|+++++++|+|+|+++.+.+.++.
T Consensus 29 tll~~l~~------~~-~~~~~pT~g~~~~~i~~~~~~~~~~d~gG~~~~~~~w~~y~~~~~~iIfVvDssd~~~l~e~~ 101 (175)
T PF00025_consen 29 TLLNRLKN------GE-ISETIPTIGFNIEEIKYKGYSLTIWDLGGQESFRPLWKSYFQNADGIIFVVDSSDPERLQEAK 101 (175)
T ss_dssp HHHHHHHS------SS-EEEEEEESSEEEEEEEETTEEEEEEEESSSGGGGGGGGGGHTTESEEEEEEETTGGGGHHHHH
T ss_pred HHHHHhhh------cc-ccccCcccccccceeeeCcEEEEEEeccccccccccceeeccccceeEEEEecccceeecccc
Confidence 66666664 22 233799999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhCCCCCCCcEEEEEeCCCCCCCCCHHHHHhHcCccccC-CcceEEEEeeecCCCCHHHHHHHHHHHH
Q 029517 100 TALEKVLRNEDLQGAPLLILANKQDLPDAVSADELARYLDLKKLD-ERVCMFEAVSGYDGFGIKESVEWLVEVM 172 (192)
Q Consensus 100 ~~~~~i~~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~-~~~~~~~~~Sa~~~~gi~e~~~~i~~~i 172 (192)
+.+..++......+.|+++++||.|++++.+.+++.+.+.+..+. ...+.++.|||.+|+|+.|.++||.+++
T Consensus 102 ~~L~~ll~~~~~~~~piLIl~NK~D~~~~~~~~~i~~~l~l~~l~~~~~~~v~~~sa~~g~Gv~e~l~WL~~~~ 175 (175)
T PF00025_consen 102 EELKELLNDPELKDIPILILANKQDLPDAMSEEEIKEYLGLEKLKNKRPWSVFSCSAKTGEGVDEGLEWLIEQI 175 (175)
T ss_dssp HHHHHHHTSGGGTTSEEEEEEESTTSTTSSTHHHHHHHTTGGGTTSSSCEEEEEEBTTTTBTHHHHHHHHHHHH
T ss_pred cchhhhcchhhcccceEEEEeccccccCcchhhHHHhhhhhhhcccCCceEEEeeeccCCcCHHHHHHHHHhcC
Confidence 999999887655789999999999999988999999999877665 6789999999999999999999999865
No 35
>cd04122 Rab14 Rab14 subfamily. Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GT
Probab=99.94 E-value=8.1e-26 Score=163.15 Aligned_cols=145 Identities=20% Similarity=0.318 Sum_probs=119.2
Q ss_pred ccccHHHHHHHHhhhhccCCCCCCCCCCCCcceEEEE----EEecCEEEEEEeCCCCcccHHHHHHhhhcCCEEEEEEeC
Q 029517 14 TKTEFHTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGR----IEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDA 89 (192)
Q Consensus 14 kst~~~~l~~~~~~~~~~~~~~~~~~~~~T~g~~~~~----~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ii~v~D~ 89 (192)
|||+++++. . +.+...+.||+|.++.. +++..+++.+||+||++++...+..+++++|++|+|||+
T Consensus 15 KTsli~~~~----~------~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~d~ 84 (166)
T cd04122 15 KSCLLHQFT----E------KKFMADCPHTIGVEFGTRIIEVNGQKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVYDI 84 (166)
T ss_pred HHHHHHHHh----c------CCCCCCCCcccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhcCCCEEEEEEEC
Confidence 566666554 3 45667788899887753 334467899999999999999999999999999999999
Q ss_pred CCcccHHHHHHHHHHHHhCCCCCCCcEEEEEeCCCCCC--CCCHHHHHhHcCccccCCcceEEEEeeecCCCCHHHHHHH
Q 029517 90 ACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPD--AVSADELARYLDLKKLDERVCMFEAVSGYDGFGIKESVEW 167 (192)
Q Consensus 90 ~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~e~~~~ 167 (192)
+++++|+.+..|+..+..... .+.|+++|+||+|+.+ ..+.+++.++++ ..+++++++||++|.||+++|.+
T Consensus 85 ~~~~s~~~~~~~~~~~~~~~~-~~~~iiiv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~e~Sa~~~~~i~e~f~~ 158 (166)
T cd04122 85 TRRSTYNHLSSWLTDARNLTN-PNTVIFLIGNKADLEAQRDVTYEEAKQFAD-----ENGLLFLECSAKTGENVEDAFLE 158 (166)
T ss_pred CCHHHHHHHHHHHHHHHHhCC-CCCeEEEEEECcccccccCcCHHHHHHHHH-----HcCCEEEEEECCCCCCHHHHHHH
Confidence 999999999999998866532 5689999999999976 456677777775 45679999999999999999999
Q ss_pred HHHHHHh
Q 029517 168 LVEVMER 174 (192)
Q Consensus 168 i~~~i~~ 174 (192)
+++.+.+
T Consensus 159 l~~~~~~ 165 (166)
T cd04122 159 TAKKIYQ 165 (166)
T ss_pred HHHHHhh
Confidence 9987754
No 36
>cd04131 Rnd Rnd subfamily. The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.94 E-value=5.7e-26 Score=165.92 Aligned_cols=133 Identities=19% Similarity=0.269 Sum_probs=112.6
Q ss_pred CCCCCCCCCCcceEEEE---EEecCEEEEEEeCCCCcccHHHHHHhhhcCCEEEEEEeCCCcccHHHH-HHHHHHHHhCC
Q 029517 34 GLPPDRIVPTVGLNIGR---IEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDS-KTALEKVLRNE 109 (192)
Q Consensus 34 ~~~~~~~~~T~g~~~~~---~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ii~v~D~~~~~s~~~~-~~~~~~i~~~~ 109 (192)
+.|...|.||++..+.. ++...+.+++|||+|++.|...+..+++++|++|+|||++++++|+.+ ..|+..+.+..
T Consensus 24 ~~f~~~~~~t~~~~~~~~~~~~~~~~~l~iwDt~G~~~~~~~~~~~~~~a~~~ilvfdit~~~Sf~~~~~~w~~~i~~~~ 103 (178)
T cd04131 24 DCYPETYVPTVFENYTASFEIDEQRIELSLWDTSGSPYYDNVRPLCYPDSDAVLICFDISRPETLDSVLKKWRGEIQEFC 103 (178)
T ss_pred CcCCCCcCCceEEEEEEEEEECCEEEEEEEEECCCchhhhhcchhhcCCCCEEEEEEECCChhhHHHHHHHHHHHHHHHC
Confidence 56777889999887652 344568999999999999999999999999999999999999999996 78999888764
Q ss_pred CCCCCcEEEEEeCCCCCC--------------CCCHHHHHhHcCccccCCcce-EEEEeeecCCCC-HHHHHHHHHHHHH
Q 029517 110 DLQGAPLLILANKQDLPD--------------AVSADELARYLDLKKLDERVC-MFEAVSGYDGFG-IKESVEWLVEVME 173 (192)
Q Consensus 110 ~~~~~piiiv~nK~Dl~~--------------~~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~g-i~e~~~~i~~~i~ 173 (192)
++.|+++||||+|+.+ .++.++..++++ ..+. .|+||||++|.| |+++|..+.+...
T Consensus 104 --~~~~iilVgnK~DL~~~~~~~~~~~~~~~~~v~~~e~~~~a~-----~~~~~~~~E~SA~~~~~~v~~~F~~~~~~~~ 176 (178)
T cd04131 104 --PNTKVLLVGCKTDLRTDLSTLMELSHQRQAPVSYEQGCAIAK-----QLGAEIYLECSAFTSEKSVRDIFHVATMACL 176 (178)
T ss_pred --CCCCEEEEEEChhhhcChhHHHHHHhcCCCCCCHHHHHHHHH-----HhCCCEEEECccCcCCcCHHHHHHHHHHHHh
Confidence 4789999999999853 367778888886 5564 899999999995 9999999998543
No 37
>cd04153 Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date.
Probab=99.94 E-value=3e-25 Score=161.56 Aligned_cols=144 Identities=35% Similarity=0.627 Sum_probs=119.5
Q ss_pred HHHHHHhhhhccCCCCCCCCCCCCcceEEEEEEecCEEEEEEeCCCCcccHHHHHHhhhcCCEEEEEEeCCCcccHHHHH
Q 029517 20 TLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSK 99 (192)
Q Consensus 20 ~l~~~~~~~~~~~~~~~~~~~~~T~g~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ii~v~D~~~~~s~~~~~ 99 (192)
+|++++.. +.+.. +.||+|.++..+....+++.+||+||++.+...+..+++++|++++|+|+++++++..+.
T Consensus 30 sl~~~l~~------~~~~~-~~~t~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi~V~D~s~~~~~~~~~ 102 (174)
T cd04153 30 TILYQFLL------GEVVH-TSPTIGSNVEEIVYKNIRFLMWDIGGQESLRSSWNTYYTNTDAVILVIDSTDRERLPLTK 102 (174)
T ss_pred HHHHHHcc------CCCCC-cCCccccceEEEEECCeEEEEEECCCCHHHHHHHHHHhhcCCEEEEEEECCCHHHHHHHH
Confidence 66666654 34443 578999988888888899999999999999999999999999999999999999999888
Q ss_pred HHHHHHHhCCCCCCCcEEEEEeCCCCCCCCCHHHHHhHcCccccCCcceEEEEeeecCCCCHHHHHHHHHH
Q 029517 100 TALEKVLRNEDLQGAPLLILANKQDLPDAVSADELARYLDLKKLDERVCMFEAVSGYDGFGIKESVEWLVE 170 (192)
Q Consensus 100 ~~~~~i~~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~e~~~~i~~ 170 (192)
.++..+.+.....++|+++++||+|+.+..+.+++.+.+.........++++++||++|.||+++|+||.+
T Consensus 103 ~~l~~~~~~~~~~~~p~viv~NK~Dl~~~~~~~~i~~~l~~~~~~~~~~~~~~~SA~~g~gi~e~~~~l~~ 173 (174)
T cd04153 103 EELYKMLAHEDLRKAVLLVLANKQDLKGAMTPAEISESLGLTSIRDHTWHIQGCCALTGEGLPEGLDWIAS 173 (174)
T ss_pred HHHHHHHhchhhcCCCEEEEEECCCCCCCCCHHHHHHHhCcccccCCceEEEecccCCCCCHHHHHHHHhc
Confidence 88888876544457999999999999876667777666654333445678999999999999999999864
No 38
>cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene.
Probab=99.94 E-value=2.8e-25 Score=160.64 Aligned_cols=146 Identities=34% Similarity=0.673 Sum_probs=122.7
Q ss_pred ccccHHHHHHHHhhhhccCCCCCCCCCCCCcceEEEEEEecCEEEEEEeCCCCcccHHHHHHhhhcCCEEEEEEeCCCcc
Q 029517 14 TKTEFHTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPS 93 (192)
Q Consensus 14 kst~~~~l~~~~~~~~~~~~~~~~~~~~~T~g~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ii~v~D~~~~~ 93 (192)
|||+++.|.+ . +...+.||+|.....+..+++.+++||+||++.++..+..|++++|++|+|+|+++..
T Consensus 12 KTsl~~~l~~----------~-~~~~~~~t~g~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~a~~ii~V~D~s~~~ 80 (167)
T cd04161 12 KTTLVSALQG----------E-IPKKVAPTVGFTPTKLRLDKYEVCIFDLGGGANFRGIWVNYYAEAHGLVFVVDSSDDD 80 (167)
T ss_pred HHHHHHHHhC----------C-CCccccCcccceEEEEEECCEEEEEEECCCcHHHHHHHHHHHcCCCEEEEEEECCchh
Confidence 5666665543 2 4567789999988888888999999999999999999999999999999999999999
Q ss_pred cHHHHHHHHHHHHhCCCCCCCcEEEEEeCCCCCCCCCHHHHHhHcCccccC---CcceEEEEeeecCC------CCHHHH
Q 029517 94 RFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAVSADELARYLDLKKLD---ERVCMFEAVSGYDG------FGIKES 164 (192)
Q Consensus 94 s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~---~~~~~~~~~Sa~~~------~gi~e~ 164 (192)
+++.+..|+..+.+.....++|+++|+||+|+.+..+.+++.+.+.+..+. ...+.+++|||++| .|+.+.
T Consensus 81 s~~~~~~~l~~l~~~~~~~~~piliv~NK~Dl~~~~~~~~i~~~~~l~~~~~~~~~~~~~~~~Sa~~g~~~~~~~g~~~~ 160 (167)
T cd04161 81 RVQEVKEILRELLQHPRVSGKPILVLANKQDKKNALLGADVIEYLSLEKLVNENKSLCHIEPCSAIEGLGKKIDPSIVEG 160 (167)
T ss_pred HHHHHHHHHHHHHcCccccCCcEEEEEeCCCCcCCCCHHHHHHhcCcccccCCCCceEEEEEeEceeCCCCccccCHHHH
Confidence 999999999998876544679999999999998877777877777654432 23578899999998 899999
Q ss_pred HHHHHH
Q 029517 165 VEWLVE 170 (192)
Q Consensus 165 ~~~i~~ 170 (192)
|+||..
T Consensus 161 ~~wl~~ 166 (167)
T cd04161 161 LRWLLA 166 (167)
T ss_pred HHHHhc
Confidence 999974
No 39
>KOG0075 consensus GTP-binding ADP-ribosylation factor-like protein [General function prediction only]
Probab=99.94 E-value=4.5e-26 Score=155.33 Aligned_cols=141 Identities=36% Similarity=0.693 Sum_probs=132.5
Q ss_pred CCCCCCCCCCcceEEEEEEecCEEEEEEeCCCCcccHHHHHHhhhcCCEEEEEEeCCCcccHHHHHHHHHHHHhCCCCCC
Q 029517 34 GLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQG 113 (192)
Q Consensus 34 ~~~~~~~~~T~g~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ii~v~D~~~~~s~~~~~~~~~~i~~~~~~~~ 113 (192)
+.+.+...||.|.+...+..+.+.+.+||.||+.+|+.+|+.|+++++++++|+|+.+++.++..+..+..++......+
T Consensus 43 g~~~edmiptvGfnmrk~tkgnvtiklwD~gGq~rfrsmWerycR~v~aivY~VDaad~~k~~~sr~EL~~LL~k~~l~g 122 (186)
T KOG0075|consen 43 GQYLEDMIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRGVSAIVYVVDAADPDKLEASRSELHDLLDKPSLTG 122 (186)
T ss_pred ccchhhhcccccceeEEeccCceEEEEEecCCCccHHHHHHHHhhcCcEEEEEeecCCcccchhhHHHHHHHhcchhhcC
Confidence 45667889999999999999999999999999999999999999999999999999999999999999999999887889
Q ss_pred CcEEEEEeCCCCCCCCCHHHHHhHcCccccCCcceEEEEeeecCCCCHHHHHHHHHHHHHh
Q 029517 114 APLLILANKQDLPDAVSADELARYLDLKKLDERVCMFEAVSGYDGFGIKESVEWLVEVMER 174 (192)
Q Consensus 114 ~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~e~~~~i~~~i~~ 174 (192)
+|++++|||.|++++.+...+.+.+.+..+.++.+.+|.+|++...|++.+.+||.++-..
T Consensus 123 ip~LVLGnK~d~~~AL~~~~li~rmgL~sitdREvcC~siScke~~Nid~~~~Wli~hsk~ 183 (186)
T KOG0075|consen 123 IPLLVLGNKIDLPGALSKIALIERMGLSSITDREVCCFSISCKEKVNIDITLDWLIEHSKS 183 (186)
T ss_pred CcEEEecccccCcccccHHHHHHHhCccccccceEEEEEEEEcCCccHHHHHHHHHHHhhh
Confidence 9999999999999999999999999999899999999999999999999999999886543
No 40
>cd00877 Ran Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is
Probab=99.94 E-value=9.7e-26 Score=162.93 Aligned_cols=145 Identities=15% Similarity=0.337 Sum_probs=117.8
Q ss_pred ccccHHHHHHHHhhhhccCCCCCCCCCCCCcceEEEEEE----ecCEEEEEEeCCCCcccHHHHHHhhhcCCEEEEEEeC
Q 029517 14 TKTEFHTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIE----VSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDA 89 (192)
Q Consensus 14 kst~~~~l~~~~~~~~~~~~~~~~~~~~~T~g~~~~~~~----~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ii~v~D~ 89 (192)
|||++++++ . +.+...+.||+|.++.... ...+.+.+|||+|++.+...+..+++.+|++|+|||+
T Consensus 13 KTsli~~~~----~------~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~ 82 (166)
T cd00877 13 KTTFVKRHL----T------GEFEKKYVATLGVEVHPLDFHTNRGKIRFNVWDTAGQEKFGGLRDGYYIGGQCAIIMFDV 82 (166)
T ss_pred HHHHHHHHH----h------CCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCChhhccccHHHhcCCCEEEEEEEC
Confidence 666666665 3 4556678999998877543 2468999999999999888888999999999999999
Q ss_pred CCcccHHHHHHHHHHHHhCCCCCCCcEEEEEeCCCCCCCCCHHHHHhHcCccccCCcceEEEEeeecCCCCHHHHHHHHH
Q 029517 90 ACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAVSADELARYLDLKKLDERVCMFEAVSGYDGFGIKESVEWLV 169 (192)
Q Consensus 90 ~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~e~~~~i~ 169 (192)
+++++++.+..|+..+.... .++|+++|+||+|+.+.....+..++.+ ....+++++||++|.|++++|++|.
T Consensus 83 ~~~~s~~~~~~~~~~i~~~~--~~~piiiv~nK~Dl~~~~~~~~~~~~~~-----~~~~~~~e~Sa~~~~~v~~~f~~l~ 155 (166)
T cd00877 83 TSRVTYKNVPNWHRDLVRVC--GNIPIVLCGNKVDIKDRKVKAKQITFHR-----KKNLQYYEISAKSNYNFEKPFLWLA 155 (166)
T ss_pred CCHHHHHHHHHHHHHHHHhC--CCCcEEEEEEchhcccccCCHHHHHHHH-----HcCCEEEEEeCCCCCChHHHHHHHH
Confidence 99999999999999998765 3799999999999975332233334443 4568899999999999999999999
Q ss_pred HHHHhc
Q 029517 170 EVMERS 175 (192)
Q Consensus 170 ~~i~~~ 175 (192)
+.+.+.
T Consensus 156 ~~~~~~ 161 (166)
T cd00877 156 RKLLGN 161 (166)
T ss_pred HHHHhc
Confidence 888653
No 41
>KOG0091 consensus GTPase Rab39, small G protein superfamily [General function prediction only]
Probab=99.94 E-value=2.5e-26 Score=159.27 Aligned_cols=151 Identities=23% Similarity=0.350 Sum_probs=130.5
Q ss_pred HHHHHHHHhhhhccCCCCCCCCCCCCcceEEEE----EE-ecCEEEEEEeCCCCcccHHHHHHhhhcCCEEEEEEeCCCc
Q 029517 18 FHTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGR----IE-VSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACP 92 (192)
Q Consensus 18 ~~~l~~~~~~~~~~~~~~~~~~~~~T~g~~~~~----~~-~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ii~v~D~~~~ 92 (192)
-.+|+..++. +.+.+--.||.|+++.. +. +..+++++|||+|+++|+.....|++++-|+++|||+++.
T Consensus 21 kssll~~ft~------gkfaelsdptvgvdffarlie~~pg~riklqlwdtagqerfrsitksyyrnsvgvllvyditnr 94 (213)
T KOG0091|consen 21 KSSLLRYFTE------GKFAELSDPTVGVDFFARLIELRPGYRIKLQLWDTAGQERFRSITKSYYRNSVGVLLVYDITNR 94 (213)
T ss_pred HHHHHHHHhc------CcccccCCCccchHHHHHHHhcCCCcEEEEEEeeccchHHHHHHHHHHhhcccceEEEEeccch
Confidence 4577777777 77888889999999863 32 3468999999999999999999999999999999999999
Q ss_pred ccHHHHHHHHHHHHhCCCC-CCCcEEEEEeCCCCCC--CCCHHHHHhHcCccccCCcceEEEEeeecCCCCHHHHHHHHH
Q 029517 93 SRFEDSKTALEKVLRNEDL-QGAPLLILANKQDLPD--AVSADELARYLDLKKLDERVCMFEAVSGYDGFGIKESVEWLV 169 (192)
Q Consensus 93 ~s~~~~~~~~~~i~~~~~~-~~~piiiv~nK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~e~~~~i~ 169 (192)
+||+.+..|+....-.... ..+-+.+||+|+||.. +++.+++..+++ .+++.|+|+||++|.||+|+|+-|.
T Consensus 95 ~sfehv~~w~~ea~m~~q~P~k~VFlLVGhKsDL~SqRqVt~EEaEklAa-----~hgM~FVETSak~g~NVeEAF~mla 169 (213)
T KOG0091|consen 95 ESFEHVENWVKEAAMATQGPDKVVFLLVGHKSDLQSQRQVTAEEAEKLAA-----SHGMAFVETSAKNGCNVEEAFDMLA 169 (213)
T ss_pred hhHHHHHHHHHHHHHhcCCCCeeEEEEeccccchhhhccccHHHHHHHHH-----hcCceEEEecccCCCcHHHHHHHHH
Confidence 9999999999988765442 3456778999999977 899999999998 8999999999999999999999999
Q ss_pred HHHHhcchhh
Q 029517 170 EVMERSKRTE 179 (192)
Q Consensus 170 ~~i~~~~~~~ 179 (192)
+.+....++.
T Consensus 170 qeIf~~i~qG 179 (213)
T KOG0091|consen 170 QEIFQAIQQG 179 (213)
T ss_pred HHHHHHHhcC
Confidence 9887665543
No 42
>PTZ00369 Ras-like protein; Provisional
Probab=99.94 E-value=1.8e-25 Score=164.76 Aligned_cols=138 Identities=22% Similarity=0.265 Sum_probs=114.6
Q ss_pred CCCCCCCCCCcceEEEE---EEecCEEEEEEeCCCCcccHHHHHHhhhcCCEEEEEEeCCCcccHHHHHHHHHHHHhCCC
Q 029517 34 GLPPDRIVPTVGLNIGR---IEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNED 110 (192)
Q Consensus 34 ~~~~~~~~~T~g~~~~~---~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ii~v~D~~~~~s~~~~~~~~~~i~~~~~ 110 (192)
+.+...+.||++..+.. ++...+.+++|||||+++|..++..+++++|++++|||++++++|+.+..|+..+.+...
T Consensus 28 ~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~~d~iilv~D~s~~~s~~~~~~~~~~i~~~~~ 107 (189)
T PTZ00369 28 NHFIDEYDPTIEDSYRKQCVIDEETCLLDILDTAGQEEYSAMRDQYMRTGQGFLCVYSITSRSSFEEIASFREQILRVKD 107 (189)
T ss_pred CCCCcCcCCchhhEEEEEEEECCEEEEEEEEeCCCCccchhhHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC
Confidence 45567788998877652 445567899999999999999999999999999999999999999999999998877644
Q ss_pred CCCCcEEEEEeCCCCCC--CCCHHHHHhHcCccccCCcceEEEEeeecCCCCHHHHHHHHHHHHHhcc
Q 029517 111 LQGAPLLILANKQDLPD--AVSADELARYLDLKKLDERVCMFEAVSGYDGFGIKESVEWLVEVMERSK 176 (192)
Q Consensus 111 ~~~~piiiv~nK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~e~~~~i~~~i~~~~ 176 (192)
..+.|+++++||+|+.+ .+..++..+..+ ..+.+++++||++|.||+++|++|.+.+.+..
T Consensus 108 ~~~~piiiv~nK~Dl~~~~~i~~~~~~~~~~-----~~~~~~~e~Sak~~~gi~~~~~~l~~~l~~~~ 170 (189)
T PTZ00369 108 KDRVPMILVGNKCDLDSERQVSTGEGQELAK-----SFGIPFLETSAKQRVNVDEAFYELVREIRKYL 170 (189)
T ss_pred CCCCCEEEEEECcccccccccCHHHHHHHHH-----HhCCEEEEeeCCCCCCHHHHHHHHHHHHHHHh
Confidence 45789999999999864 345555555554 34578999999999999999999999887654
No 43
>KOG0071 consensus GTP-binding ADP-ribosylation factor Arf6 (dArf3) [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.94 E-value=1.9e-25 Score=151.19 Aligned_cols=166 Identities=34% Similarity=0.669 Sum_probs=148.7
Q ss_pred ChhhhHHHHhhhhccccHH------------HHHHHHhhhhccCCCCCCCCCCCCcceEEEEEEecCEEEEEEeCCCCcc
Q 029517 1 MFSLFYGLWKYIFTKTEFH------------TLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPG 68 (192)
Q Consensus 1 ~~~~~~~~~~~~~kst~~~------------~l~~~~~~~~~~~~~~~~~~~~~T~g~~~~~~~~~~~~~~i~D~~G~~~ 68 (192)
|.+.|++++-..|-+.-++ |+++.+.. +. +....||.|.++..+.++.+.+++||++|+++
T Consensus 1 Mgn~~sk~~~k~f~~KE~~ilmlGLd~aGKTtiLyKLkl------~~-~~~~ipTvGFnvetVtykN~kfNvwdvGGqd~ 73 (180)
T KOG0071|consen 1 MGNYMSKLLSKIFGNKEMRILMLGLDAAGKTTILYKLKL------GQ-SVTTIPTVGFNVETVTYKNVKFNVWDVGGQDK 73 (180)
T ss_pred CcchHHHHHHHHhCcccceEEEEecccCCceehhhHHhc------CC-CcccccccceeEEEEEeeeeEEeeeeccCchh
Confidence 7777777776666655555 77777775 33 45569999999999999999999999999999
Q ss_pred cHHHHHHhhhcCCEEEEEEeCCCcccHHHHHHHHHHHHhCCCCCCCcEEEEEeCCCCCCCCCHHHHHhHcCccccCCcce
Q 029517 69 LRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAVSADELARYLDLKKLDERVC 148 (192)
Q Consensus 69 ~~~~~~~~~~~~d~ii~v~D~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~ 148 (192)
.++.|.+|+.+..++|||+|+.+.+..++++..+.++....+..+.|+++.+||.|++++..+.++.++++++.+..+.+
T Consensus 74 iRplWrhYy~gtqglIFV~Dsa~~dr~eeAr~ELh~ii~~~em~~~~~LvlANkQDlp~A~~pqei~d~leLe~~r~~~W 153 (180)
T KOG0071|consen 74 IRPLWRHYYTGTQGLIFVVDSADRDRIEEARNELHRIINDREMRDAIILILANKQDLPDAMKPQEIQDKLELERIRDRNW 153 (180)
T ss_pred hhHHHHhhccCCceEEEEEeccchhhHHHHHHHHHHHhCCHhhhcceEEEEecCcccccccCHHHHHHHhccccccCCcc
Confidence 99999999999999999999999999999999999999988878999999999999999999999999999988888899
Q ss_pred EEEEeeecCCCCHHHHHHHHHHHHH
Q 029517 149 MFEAVSGYDGFGIKESVEWLVEVME 173 (192)
Q Consensus 149 ~~~~~Sa~~~~gi~e~~~~i~~~i~ 173 (192)
.+.+++|.+|+|+.|-|.||.+.+.
T Consensus 154 ~vqp~~a~~gdgL~eglswlsnn~~ 178 (180)
T KOG0071|consen 154 YVQPSCALSGDGLKEGLSWLSNNLK 178 (180)
T ss_pred EeeccccccchhHHHHHHHHHhhcc
Confidence 9999999999999999999987653
No 44
>KOG0095 consensus GTPase Rab30, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.94 E-value=2e-26 Score=157.65 Aligned_cols=156 Identities=23% Similarity=0.381 Sum_probs=128.1
Q ss_pred HhhhhccccH-H------HHHHHHhhhhccCCCCCCCCCCCCcceEEE----EEEecCEEEEEEeCCCCcccHHHHHHhh
Q 029517 9 WKYIFTKTEF-H------TLLEKLKSVYSNVEGLPPDRIVPTVGLNIG----RIEVSNSKLVFWDLGGQPGLRSIWEKYY 77 (192)
Q Consensus 9 ~~~~~kst~~-~------~l~~~~~~~~~~~~~~~~~~~~~T~g~~~~----~~~~~~~~~~i~D~~G~~~~~~~~~~~~ 77 (192)
||++||--+. | +|..|++. +-|++....|+|+++- ++++.+++++||||+|+++|+.....|+
T Consensus 4 ykflfkivlvgnagvgktclvrrftq------glfppgqgatigvdfmiktvev~gekiklqiwdtagqerfrsitqsyy 77 (213)
T KOG0095|consen 4 YKFLFKIVLVGNAGVGKTCLVRRFTQ------GLFPPGQGATIGVDFMIKTVEVNGEKIKLQIWDTAGQERFRSITQSYY 77 (213)
T ss_pred cceeEEEEEEccCCcCcchhhhhhhc------cCCCCCCCceeeeeEEEEEEEECCeEEEEEEeeccchHHHHHHHHHHh
Confidence 5667776665 2 77888887 8888888999999876 3666789999999999999999999999
Q ss_pred hcCCEEEEEEeCCCcccHHHHHHHHHHHHhCCCCCCCcEEEEEeCCCCCC--CCCHHHHHhHcCccccCCcceEEEEeee
Q 029517 78 EEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPD--AVSADELARYLDLKKLDERVCMFEAVSG 155 (192)
Q Consensus 78 ~~~d~ii~v~D~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 155 (192)
+.++++|+|||+++..+|+.+.+|+..+.++.. ...--++|+||+|+.+ +++..-..++.+ ...+-|.++||
T Consensus 78 rsahalilvydiscqpsfdclpewlreie~yan-~kvlkilvgnk~d~~drrevp~qigeefs~-----~qdmyfletsa 151 (213)
T KOG0095|consen 78 RSAHALILVYDISCQPSFDCLPEWLREIEQYAN-NKVLKILVGNKIDLADRREVPQQIGEEFSE-----AQDMYFLETSA 151 (213)
T ss_pred hhcceEEEEEecccCcchhhhHHHHHHHHHHhh-cceEEEeeccccchhhhhhhhHHHHHHHHH-----hhhhhhhhhcc
Confidence 999999999999999999999999999998753 4667789999999976 333333333333 45677899999
Q ss_pred cCCCCHHHHHHHHHHHHHhcc
Q 029517 156 YDGFGIKESVEWLVEVMERSK 176 (192)
Q Consensus 156 ~~~~gi~e~~~~i~~~i~~~~ 176 (192)
+...||+.+|..+.-.+....
T Consensus 152 kea~nve~lf~~~a~rli~~a 172 (213)
T KOG0095|consen 152 KEADNVEKLFLDLACRLISEA 172 (213)
T ss_pred cchhhHHHHHHHHHHHHHHHH
Confidence 999999999999977666543
No 45
>PLN03071 GTP-binding nuclear protein Ran; Provisional
Probab=99.94 E-value=1.6e-25 Score=168.63 Aligned_cols=142 Identities=15% Similarity=0.381 Sum_probs=116.8
Q ss_pred HHHHHHhhhhccCCCCCCCCCCCCcceEEEEEE----ecCEEEEEEeCCCCcccHHHHHHhhhcCCEEEEEEeCCCcccH
Q 029517 20 TLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIE----VSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRF 95 (192)
Q Consensus 20 ~l~~~~~~~~~~~~~~~~~~~~~T~g~~~~~~~----~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ii~v~D~~~~~s~ 95 (192)
+|++++.. +.+...|.||+|.++.... ...+++.+|||+|+++|...+..++++++++|+|||+++..++
T Consensus 28 sli~~~~~------~~f~~~~~~tig~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilvfD~~~~~s~ 101 (219)
T PLN03071 28 TFVKRHLT------GEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTY 101 (219)
T ss_pred HHHHHHhh------CCCCCccCCccceeEEEEEEEECCeEEEEEEEECCCchhhhhhhHHHcccccEEEEEEeCCCHHHH
Confidence 44455444 5677888999998877543 2458999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhCCCCCCCcEEEEEeCCCCCC-CCCHHHHHhHcCccccCCcceEEEEeeecCCCCHHHHHHHHHHHHHh
Q 029517 96 EDSKTALEKVLRNEDLQGAPLLILANKQDLPD-AVSADELARYLDLKKLDERVCMFEAVSGYDGFGIKESVEWLVEVMER 174 (192)
Q Consensus 96 ~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~e~~~~i~~~i~~ 174 (192)
+.+..|+..+.+.. .++|+++|+||+|+.. .+..+++ ++.. ..+++++++||++|.||+++|+||.+.+.+
T Consensus 102 ~~i~~w~~~i~~~~--~~~piilvgNK~Dl~~~~v~~~~~-~~~~-----~~~~~~~e~SAk~~~~i~~~f~~l~~~~~~ 173 (219)
T PLN03071 102 KNVPTWHRDLCRVC--ENIPIVLCGNKVDVKNRQVKAKQV-TFHR-----KKNLQYYEISAKSNYNFEKPFLYLARKLAG 173 (219)
T ss_pred HHHHHHHHHHHHhC--CCCcEEEEEEchhhhhccCCHHHH-HHHH-----hcCCEEEEcCCCCCCCHHHHHHHHHHHHHc
Confidence 99999999998764 5799999999999965 3333444 4433 456889999999999999999999998875
Q ss_pred c
Q 029517 175 S 175 (192)
Q Consensus 175 ~ 175 (192)
.
T Consensus 174 ~ 174 (219)
T PLN03071 174 D 174 (219)
T ss_pred C
Confidence 4
No 46
>cd04175 Rap1 Rap1 subgroup. The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the n
Probab=99.94 E-value=1.5e-25 Score=161.28 Aligned_cols=145 Identities=20% Similarity=0.325 Sum_probs=115.4
Q ss_pred ccccHHHHHHHHhhhhccCCCCCCCCCCCCcceEEE-E--EEecCEEEEEEeCCCCcccHHHHHHhhhcCCEEEEEEeCC
Q 029517 14 TKTEFHTLLEKLKSVYSNVEGLPPDRIVPTVGLNIG-R--IEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAA 90 (192)
Q Consensus 14 kst~~~~l~~~~~~~~~~~~~~~~~~~~~T~g~~~~-~--~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ii~v~D~~ 90 (192)
|||++++++ . +.+...+.||++..+. . +.+..+.+++|||||++++...+..+++++|++++|||++
T Consensus 14 KTsli~~~~----~------~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~ 83 (164)
T cd04175 14 KSALTVQFV----Q------GIFVEKYDPTIEDSYRKQVEVDGQQCMLEILDTAGTEQFTAMRDLYMKNGQGFVLVYSIT 83 (164)
T ss_pred HHHHHHHHH----h------CCCCcccCCcchheEEEEEEECCEEEEEEEEECCCcccchhHHHHHHhhCCEEEEEEECC
Confidence 666666664 2 4455667888886554 2 3334678899999999999999999999999999999999
Q ss_pred CcccHHHHHHHHHHHHhCCCCCCCcEEEEEeCCCCCC--CCCHHHHHhHcCccccCCcceEEEEeeecCCCCHHHHHHHH
Q 029517 91 CPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPD--AVSADELARYLDLKKLDERVCMFEAVSGYDGFGIKESVEWL 168 (192)
Q Consensus 91 ~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~e~~~~i 168 (192)
+..+++.+..|+..+.......+.|+++++||+|+.. ....++..++.+ ..+.+++++||++|.|++++|+++
T Consensus 84 ~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~~v~~~~~~l 158 (164)
T cd04175 84 AQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDERVVGKEQGQNLAR-----QWGCAFLETSAKAKINVNEIFYDL 158 (164)
T ss_pred CHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCcchhccEEcHHHHHHHHH-----HhCCEEEEeeCCCCCCHHHHHHHH
Confidence 9999999999999988754446799999999999975 234444444443 335789999999999999999999
Q ss_pred HHHHH
Q 029517 169 VEVME 173 (192)
Q Consensus 169 ~~~i~ 173 (192)
.+.+.
T Consensus 159 ~~~l~ 163 (164)
T cd04175 159 VRQIN 163 (164)
T ss_pred HHHhh
Confidence 87653
No 47
>cd04127 Rab27A Rab27a subfamily. The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated
Probab=99.94 E-value=3.5e-25 Score=161.68 Aligned_cols=146 Identities=18% Similarity=0.332 Sum_probs=119.6
Q ss_pred ccccHHHHHHHHhhhhccCCCCCCCCCCCCcceEEEE--EE------------ecCEEEEEEeCCCCcccHHHHHHhhhc
Q 029517 14 TKTEFHTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGR--IE------------VSNSKLVFWDLGGQPGLRSIWEKYYEE 79 (192)
Q Consensus 14 kst~~~~l~~~~~~~~~~~~~~~~~~~~~T~g~~~~~--~~------------~~~~~~~i~D~~G~~~~~~~~~~~~~~ 79 (192)
|||+++++ .. +.+...+.||+|.++.. +. ...+++.+||+||++++...+..++++
T Consensus 17 KTsli~~~----~~------~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ 86 (180)
T cd04127 17 KTSFLYQY----TD------NKFNPKFITTVGIDFREKRVVYNSSGPGGTLGRGQRIHLQLWDTAGQERFRSLTTAFFRD 86 (180)
T ss_pred HHHHHHHH----hc------CCCCccCCCccceEEEEEEEEEcCccccccccCCCEEEEEEEeCCChHHHHHHHHHHhCC
Confidence 56665555 43 55677889999987753 22 224789999999999999999999999
Q ss_pred CCEEEEEEeCCCcccHHHHHHHHHHHHhCCCCCCCcEEEEEeCCCCCC--CCCHHHHHhHcCccccCCcceEEEEeeecC
Q 029517 80 AHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPD--AVSADELARYLDLKKLDERVCMFEAVSGYD 157 (192)
Q Consensus 80 ~d~ii~v~D~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 157 (192)
+|++++|||+++++++..+..|+..+.......+.|+++|+||+|+.+ .++.+++.++++ ..+++++++||++
T Consensus 87 ~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~~~~v~~~~~~~~~~-----~~~~~~~e~Sak~ 161 (180)
T cd04127 87 AMGFLLIFDLTNEQSFLNVRNWMSQLQTHAYCENPDIVLCGNKADLEDQRQVSEEQAKALAD-----KYGIPYFETSAAT 161 (180)
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEeCccchhcCccCHHHHHHHHH-----HcCCeEEEEeCCC
Confidence 999999999999999999999999987754335789999999999965 456667777765 4467899999999
Q ss_pred CCCHHHHHHHHHHHHHh
Q 029517 158 GFGIKESVEWLVEVMER 174 (192)
Q Consensus 158 ~~gi~e~~~~i~~~i~~ 174 (192)
|.|++++|++|.+.+.+
T Consensus 162 ~~~v~~l~~~l~~~~~~ 178 (180)
T cd04127 162 GTNVEKAVERLLDLVMK 178 (180)
T ss_pred CCCHHHHHHHHHHHHHh
Confidence 99999999999987754
No 48
>cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date.
Probab=99.94 E-value=4.6e-25 Score=159.10 Aligned_cols=145 Identities=29% Similarity=0.517 Sum_probs=120.7
Q ss_pred ccccHHHHHHHHhhhhccCCCCCCCCCCCCcceEEEEEEecCEEEEEEeCCCCcccHHHHHHhhhcCCEEEEEEeCCCcc
Q 029517 14 TKTEFHTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPS 93 (192)
Q Consensus 14 kst~~~~l~~~~~~~~~~~~~~~~~~~~~T~g~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ii~v~D~~~~~ 93 (192)
|||++++|. . +.+...+.||+|.....+...++++.+||+||+++++..+..+++++|++|+|+|++++.
T Consensus 12 KTsli~~~~----~------~~~~~~~~pt~g~~~~~i~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~ii~V~D~t~~~ 81 (164)
T cd04162 12 KTSLLHSLS----S------ERSLESVVPTTGFNSVAIPTQDAIMELLEIGGSQNLRKYWKRYLSGSQGLIFVVDSADSE 81 (164)
T ss_pred HHHHHHHHh----c------CCCcccccccCCcceEEEeeCCeEEEEEECCCCcchhHHHHHHHhhCCEEEEEEECCCHH
Confidence 666666664 3 345567899999888778888999999999999999999999999999999999999999
Q ss_pred cHHHHHHHHHHHHhCCCCCCCcEEEEEeCCCCCCCCCHHHHHhHcCcccc-CCcceEEEEeeecC------CCCHHHHHH
Q 029517 94 RFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAVSADELARYLDLKKL-DERVCMFEAVSGYD------GFGIKESVE 166 (192)
Q Consensus 94 s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~-~~~~~~~~~~Sa~~------~~gi~e~~~ 166 (192)
++..++.|+..+.... .++|+++|+||+|+..+...+++.+.+.+..+ ...++.++++||++ ++||+++|+
T Consensus 82 s~~~~~~~l~~~~~~~--~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~~Sa~~~~s~~~~~~v~~~~~ 159 (164)
T cd04162 82 RLPLARQELHQLLQHP--PDLPLVVLANKQDLPAARSVQEIHKELELEPIARGRRWILQGTSLDDDGSPSRMEAVKDLLS 159 (164)
T ss_pred HHHHHHHHHHHHHhCC--CCCcEEEEEeCcCCcCCCCHHHHHHHhCChhhcCCCceEEEEeeecCCCChhHHHHHHHHHH
Confidence 9999999988887553 57999999999999877666666666554433 34578899999999 999999999
Q ss_pred HHHH
Q 029517 167 WLVE 170 (192)
Q Consensus 167 ~i~~ 170 (192)
.+..
T Consensus 160 ~~~~ 163 (164)
T cd04162 160 QLIN 163 (164)
T ss_pred HHhc
Confidence 8764
No 49
>cd04151 Arl1 Arl1 subfamily. Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability.
Probab=99.93 E-value=7.1e-25 Score=156.97 Aligned_cols=146 Identities=36% Similarity=0.659 Sum_probs=114.9
Q ss_pred ccccHHHHHHHHhhhhccCCCCCCCCCCCCcceEEEEEEecCEEEEEEeCCCCcccHHHHHHhhhcCCEEEEEEeCCCcc
Q 029517 14 TKTEFHTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPS 93 (192)
Q Consensus 14 kst~~~~l~~~~~~~~~~~~~~~~~~~~~T~g~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ii~v~D~~~~~ 93 (192)
|||++++|.. +.+ ..+.||+|.++..+++.++.+++|||||++++...+..+++.+|++++|+|++++.
T Consensus 12 KTsl~~~l~~----------~~~-~~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~ii~v~d~~~~~ 80 (158)
T cd04151 12 KTTILYRLQL----------GEV-VTTIPTIGFNVETVTYKNLKFQVWDLGGQTSIRPYWRCYYSNTDAIIYVVDSTDRD 80 (158)
T ss_pred HHHHHHHHcc----------CCC-cCcCCccCcCeEEEEECCEEEEEEECCCCHHHHHHHHHHhcCCCEEEEEEECCCHH
Confidence 6777777632 122 23578999888888888899999999999999999999999999999999999988
Q ss_pred cHHHHHHHHHHHHhCCCCCCCcEEEEEeCCCCCCCCCHHHHHhHcCccccCCcceEEEEeeecCCCCHHHHHHHHHH
Q 029517 94 RFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAVSADELARYLDLKKLDERVCMFEAVSGYDGFGIKESVEWLVE 170 (192)
Q Consensus 94 s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~e~~~~i~~ 170 (192)
++.....++..+.+.....++|+++++||+|+.+....+++.+.+........+.+++++||++|.|++++|++|.+
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~piiiv~nK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~ 157 (158)
T cd04151 81 RLGTAKEELHAMLEEEELKGAVLLVFANKQDMPGALSEAEISEKLGLSELKDRTWSIFKTSAIKGEGLDEGMDWLVN 157 (158)
T ss_pred HHHHHHHHHHHHHhchhhcCCcEEEEEeCCCCCCCCCHHHHHHHhCccccCCCcEEEEEeeccCCCCHHHHHHHHhc
Confidence 88877777776655433357999999999999865555666555543222344578999999999999999999975
No 50
>cd04144 Ras2 Ras2 subfamily. The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=99.93 E-value=3.4e-25 Score=163.46 Aligned_cols=151 Identities=19% Similarity=0.244 Sum_probs=119.0
Q ss_pred ccccHHHHHHHHhhhhccCCCCCCCCCCCCcceEEEE---EEecCEEEEEEeCCCCcccHHHHHHhhhcCCEEEEEEeCC
Q 029517 14 TKTEFHTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGR---IEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAA 90 (192)
Q Consensus 14 kst~~~~l~~~~~~~~~~~~~~~~~~~~~T~g~~~~~---~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ii~v~D~~ 90 (192)
|||++++|. . +.+...+.||++..+.. +.+..+.+++|||||+++|...+..+++.+|++|+|||++
T Consensus 12 KTsli~~l~----~------~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d~~ 81 (190)
T cd04144 12 KTALTIQLC----L------NHFVETYDPTIEDSYRKQVVVDGQPCMLEVLDTAGQEEYTALRDQWIREGEGFILVYSIT 81 (190)
T ss_pred HHHHHHHHH----h------CCCCccCCCchHhhEEEEEEECCEEEEEEEEECCCchhhHHHHHHHHHhCCEEEEEEECC
Confidence 666666664 3 45566778888865542 3334578999999999999999999999999999999999
Q ss_pred CcccHHHHHHHHHHHHhCCC--CCCCcEEEEEeCCCCCC--CCCHHHHHhHcCccccCCcceEEEEeeecCCCCHHHHHH
Q 029517 91 CPSRFEDSKTALEKVLRNED--LQGAPLLILANKQDLPD--AVSADELARYLDLKKLDERVCMFEAVSGYDGFGIKESVE 166 (192)
Q Consensus 91 ~~~s~~~~~~~~~~i~~~~~--~~~~piiiv~nK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~e~~~ 166 (192)
+..+++.+..|+..+..... ..+.|+++|+||+|+.. .+..++..++.. ..+.+++++||++|.||+++|+
T Consensus 82 ~~~s~~~~~~~~~~i~~~~~~~~~~~piilvgNK~Dl~~~~~v~~~~~~~~~~-----~~~~~~~e~SAk~~~~v~~l~~ 156 (190)
T cd04144 82 SRSTFERVERFREQIQRVKDESAADVPIMIVGNKCDKVYEREVSTEEGAALAR-----RLGCEFIEASAKTNVNVERAFY 156 (190)
T ss_pred CHHHHHHHHHHHHHHHHHhcccCCCCCEEEEEEChhccccCccCHHHHHHHHH-----HhCCEEEEecCCCCCCHHHHHH
Confidence 99999999999988876432 24789999999999964 444555555544 3457899999999999999999
Q ss_pred HHHHHHHhcchhh
Q 029517 167 WLVEVMERSKRTE 179 (192)
Q Consensus 167 ~i~~~i~~~~~~~ 179 (192)
++++.+.+..+..
T Consensus 157 ~l~~~l~~~~~~~ 169 (190)
T cd04144 157 TLVRALRQQRQGG 169 (190)
T ss_pred HHHHHHHHhhccc
Confidence 9999887665443
No 51
>cd01874 Cdc42 Cdc42 subfamily. Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addi
Probab=99.93 E-value=4.7e-25 Score=160.69 Aligned_cols=133 Identities=19% Similarity=0.280 Sum_probs=106.6
Q ss_pred CCCCCCCCCCcceEEE-EEE--ecCEEEEEEeCCCCcccHHHHHHhhhcCCEEEEEEeCCCcccHHHHH-HHHHHHHhCC
Q 029517 34 GLPPDRIVPTVGLNIG-RIE--VSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSK-TALEKVLRNE 109 (192)
Q Consensus 34 ~~~~~~~~~T~g~~~~-~~~--~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ii~v~D~~~~~s~~~~~-~~~~~i~~~~ 109 (192)
+.|.+.|.||+|..+. .+. ...+++++|||+|+++|...+..+++++|++|+|||++++++|+.+. .|+..+....
T Consensus 24 ~~f~~~~~pt~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~a~~~ilv~d~~~~~s~~~~~~~w~~~i~~~~ 103 (175)
T cd01874 24 NKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHC 103 (175)
T ss_pred CCCCCCCCCceeeeeEEEEEECCEEEEEEEEECCCccchhhhhhhhcccCCEEEEEEECCCHHHHHHHHHHHHHHHHHhC
Confidence 5677789999998776 333 33588999999999999999999999999999999999999999997 5887776653
Q ss_pred CCCCCcEEEEEeCCCCCCC--------------CCHHHHHhHcCccccCCcceEEEEeeecCCCCHHHHHHHHHHHH
Q 029517 110 DLQGAPLLILANKQDLPDA--------------VSADELARYLDLKKLDERVCMFEAVSGYDGFGIKESVEWLVEVM 172 (192)
Q Consensus 110 ~~~~~piiiv~nK~Dl~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~e~~~~i~~~i 172 (192)
.++|+++|+||+|+... ++.+++.++++ ......++++||++|.||+++|+.+.++.
T Consensus 104 --~~~piilvgnK~Dl~~~~~~~~~l~~~~~~~v~~~~~~~~a~----~~~~~~~~e~SA~tg~~v~~~f~~~~~~~ 174 (175)
T cd01874 104 --PKTPFLLVGTQIDLRDDPSTIEKLAKNKQKPITPETGEKLAR----DLKAVKYVECSALTQKGLKNVFDEAILAA 174 (175)
T ss_pred --CCCCEEEEEECHhhhhChhhHHHhhhccCCCcCHHHHHHHHH----HhCCcEEEEecCCCCCCHHHHHHHHHHHh
Confidence 47999999999998542 33344444443 12237899999999999999999998754
No 52
>cd04128 Spg1 Spg1p. Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are
Probab=99.93 E-value=4.9e-25 Score=161.54 Aligned_cols=136 Identities=17% Similarity=0.252 Sum_probs=109.4
Q ss_pred CCCCCCCCCCcceEEE--EEE--ecCEEEEEEeCCCCcccHHHHHHhhhcCCEEEEEEeCCCcccHHHHHHHHHHHHhCC
Q 029517 34 GLPPDRIVPTVGLNIG--RIE--VSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNE 109 (192)
Q Consensus 34 ~~~~~~~~~T~g~~~~--~~~--~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ii~v~D~~~~~s~~~~~~~~~~i~~~~ 109 (192)
+.|...|.||+|.++. .+. +..+.+++||++|+++|...+..+++++|++++|||++++.+++.+..|+..+.+..
T Consensus 23 ~~f~~~~~~T~g~~~~~~~i~~~~~~~~l~iwDt~G~~~~~~~~~~~~~~a~~iilv~D~t~~~s~~~i~~~~~~~~~~~ 102 (182)
T cd04128 23 GEFDEDYIQTLGVNFMEKTISIRGTEITFSIWDLGGQREFINMLPLVCNDAVAILFMFDLTRKSTLNSIKEWYRQARGFN 102 (182)
T ss_pred CCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCchhHHHhhHHHCcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhC
Confidence 5667789999998874 333 335789999999999999999999999999999999999999999999999987753
Q ss_pred CCCCCcEEEEEeCCCCCCCC-------CHHHHHhHcCccccCCcceEEEEeeecCCCCHHHHHHHHHHHHHhcc
Q 029517 110 DLQGAPLLILANKQDLPDAV-------SADELARYLDLKKLDERVCMFEAVSGYDGFGIKESVEWLVEVMERSK 176 (192)
Q Consensus 110 ~~~~~piiiv~nK~Dl~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~e~~~~i~~~i~~~~ 176 (192)
. ...| ++|+||+|+.... ..++..++++ ..+.+++++||++|.||+++|+++.+.+.+..
T Consensus 103 ~-~~~p-ilVgnK~Dl~~~~~~~~~~~~~~~~~~~a~-----~~~~~~~e~SAk~g~~v~~lf~~l~~~l~~~~ 169 (182)
T cd04128 103 K-TAIP-ILVGTKYDLFADLPPEEQEEITKQARKYAK-----AMKAPLIFCSTSHSINVQKIFKIVLAKAFDLP 169 (182)
T ss_pred C-CCCE-EEEEEchhccccccchhhhhhHHHHHHHHH-----HcCCEEEEEeCCCCCCHHHHHHHHHHHHHhcC
Confidence 3 3567 5789999995311 1233444443 34578999999999999999999999887644
No 53
>cd04173 Rnd2_Rho7 Rnd2/Rho7 subfamily. Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in sperma
Probab=99.93 E-value=9.4e-25 Score=164.21 Aligned_cols=135 Identities=16% Similarity=0.183 Sum_probs=110.0
Q ss_pred CCCCCCCCCCcceEEE---EEEecCEEEEEEeCCCCcccHHHHHHhhhcCCEEEEEEeCCCcccHHHHH-HHHHHHHhCC
Q 029517 34 GLPPDRIVPTVGLNIG---RIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSK-TALEKVLRNE 109 (192)
Q Consensus 34 ~~~~~~~~~T~g~~~~---~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ii~v~D~~~~~s~~~~~-~~~~~i~~~~ 109 (192)
+.|.+.|.||++.++. .+++..+.+.+|||+|++.|...+..+++++|++|+|||++++++|+.+. .|...+....
T Consensus 24 ~~f~~~y~pTi~~~~~~~~~~~~~~v~L~iwDt~G~e~~~~l~~~~~~~~d~illvfdis~~~Sf~~i~~~w~~~~~~~~ 103 (222)
T cd04173 24 DAYPGSYVPTVFENYTASFEIDKRRIELNMWDTSGSSYYDNVRPLAYPDSDAVLICFDISRPETLDSVLKKWQGETQEFC 103 (222)
T ss_pred CCCCCccCCccccceEEEEEECCEEEEEEEEeCCCcHHHHHHhHHhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhC
Confidence 6677889999998775 23445689999999999999999999999999999999999999999984 5666554443
Q ss_pred CCCCCcEEEEEeCCCCCC--------------CCCHHHHHhHcCccccCCcc-eEEEEeeecCCCC-HHHHHHHHHHHHH
Q 029517 110 DLQGAPLLILANKQDLPD--------------AVSADELARYLDLKKLDERV-CMFEAVSGYDGFG-IKESVEWLVEVME 173 (192)
Q Consensus 110 ~~~~~piiiv~nK~Dl~~--------------~~~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~g-i~e~~~~i~~~i~ 173 (192)
.+.|+++|+||+|+.+ .++.++..++++ ..+ .+|+||||+++.| |+++|+.+.....
T Consensus 104 --~~~piiLVgnK~DL~~~~~~~~~~~~~~~~pIs~e~g~~~ak-----~~~~~~y~E~SAk~~~~~V~~~F~~~~~~~~ 176 (222)
T cd04173 104 --PNAKVVLVGCKLDMRTDLATLRELSKQRLIPVTHEQGTVLAK-----QVGAVSYVECSSRSSERSVRDVFHVATVASL 176 (222)
T ss_pred --CCCCEEEEEECcccccchhhhhhhhhccCCccCHHHHHHHHH-----HcCCCEEEEcCCCcCCcCHHHHHHHHHHHHH
Confidence 5799999999999954 245566666665 344 5899999999885 9999999999766
Q ss_pred hc
Q 029517 174 RS 175 (192)
Q Consensus 174 ~~ 175 (192)
..
T Consensus 177 ~~ 178 (222)
T cd04173 177 GR 178 (222)
T ss_pred hc
Confidence 53
No 54
>cd01865 Rab3 Rab3 subfamily. The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot
Probab=99.93 E-value=1.4e-24 Score=156.60 Aligned_cols=145 Identities=21% Similarity=0.311 Sum_probs=116.0
Q ss_pred ccccHHHHHHHHhhhhccCCCCCCCCCCCCcceEEEE--EE--ecCEEEEEEeCCCCcccHHHHHHhhhcCCEEEEEEeC
Q 029517 14 TKTEFHTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGR--IE--VSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDA 89 (192)
Q Consensus 14 kst~~~~l~~~~~~~~~~~~~~~~~~~~~T~g~~~~~--~~--~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ii~v~D~ 89 (192)
|||++++| .. +.+...|.||+|.++.. +. ...+.+++||++|++++...+..+++++|++++|||+
T Consensus 14 KSsli~~l----~~------~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~g~~~~~~~~~~~~~~~~~~l~v~d~ 83 (165)
T cd01865 14 KTSFLFRY----AD------DSFTSAFVSTVGIDFKVKTVFRNDKRVKLQIWDTAGQERYRTITTAYYRGAMGFILMYDI 83 (165)
T ss_pred HHHHHHHH----hc------CCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHccCCcEEEEEEEC
Confidence 56655555 44 55667788999876642 32 2357899999999999999999999999999999999
Q ss_pred CCcccHHHHHHHHHHHHhCCCCCCCcEEEEEeCCCCCC--CCCHHHHHhHcCccccCCcceEEEEeeecCCCCHHHHHHH
Q 029517 90 ACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPD--AVSADELARYLDLKKLDERVCMFEAVSGYDGFGIKESVEW 167 (192)
Q Consensus 90 ~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~e~~~~ 167 (192)
++.++++.+..|+..+.+... .+.|+++|+||+|+.+ ....++..+... ..+++++++||++|.|++++|++
T Consensus 84 ~~~~s~~~~~~~~~~i~~~~~-~~~piivv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~gv~~l~~~ 157 (165)
T cd01865 84 TNEESFNAVQDWSTQIKTYSW-DNAQVILVGNKCDMEDERVVSSERGRQLAD-----QLGFEFFEASAKENINVKQVFER 157 (165)
T ss_pred CCHHHHHHHHHHHHHHHHhCC-CCCCEEEEEECcccCcccccCHHHHHHHHH-----HcCCEEEEEECCCCCCHHHHHHH
Confidence 999999999999999876532 4689999999999965 344555555554 34568999999999999999999
Q ss_pred HHHHHHh
Q 029517 168 LVEVMER 174 (192)
Q Consensus 168 i~~~i~~ 174 (192)
+.+.+.+
T Consensus 158 l~~~~~~ 164 (165)
T cd01865 158 LVDIICD 164 (165)
T ss_pred HHHHHHh
Confidence 9887643
No 55
>cd04110 Rab35 Rab35 subfamily. Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is
Probab=99.93 E-value=1.5e-24 Score=161.10 Aligned_cols=148 Identities=21% Similarity=0.367 Sum_probs=119.7
Q ss_pred ccccHHHHHHHHhhhhccCCCCCCCCCCCCcceEEEE--EE--ecCEEEEEEeCCCCcccHHHHHHhhhcCCEEEEEEeC
Q 029517 14 TKTEFHTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGR--IE--VSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDA 89 (192)
Q Consensus 14 kst~~~~l~~~~~~~~~~~~~~~~~~~~~T~g~~~~~--~~--~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ii~v~D~ 89 (192)
|||++++|+ . +.+...|.||+|.++.. +. +..+.+.+||+||++.+...+..++++++++++|+|+
T Consensus 19 KTsli~~l~----~------~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~a~~iilv~D~ 88 (199)
T cd04110 19 KSSLLLRFA----D------NTFSGSYITTIGVDFKIRTVEINGERVKLQIWDTAGQERFRTITSTYYRGTHGVIVVYDV 88 (199)
T ss_pred HHHHHHHHh----c------CCCCCCcCccccceeEEEEEEECCEEEEEEEEeCCCchhHHHHHHHHhCCCcEEEEEEEC
Confidence 566665554 3 45566788999977653 33 3357899999999999999999999999999999999
Q ss_pred CCcccHHHHHHHHHHHHhCCCCCCCcEEEEEeCCCCCC--CCCHHHHHhHcCccccCCcceEEEEeeecCCCCHHHHHHH
Q 029517 90 ACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPD--AVSADELARYLDLKKLDERVCMFEAVSGYDGFGIKESVEW 167 (192)
Q Consensus 90 ~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~e~~~~ 167 (192)
+++++++.+..|+..+.... ...|+++|+||+|+.. ....+++.++.. ..+.+++++||++|.||+++|++
T Consensus 89 ~~~~s~~~~~~~~~~i~~~~--~~~piivVgNK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~e~Sa~~~~gi~~lf~~ 161 (199)
T cd04110 89 TNGESFVNVKRWLQEIEQNC--DDVCKVLVGNKNDDPERKVVETEDAYKFAG-----QMGISLFETSAKENINVEEMFNC 161 (199)
T ss_pred CCHHHHHHHHHHHHHHHHhC--CCCCEEEEEECcccccccccCHHHHHHHHH-----HcCCEEEEEECCCCcCHHHHHHH
Confidence 99999999999999887654 4789999999999975 345566666665 34578999999999999999999
Q ss_pred HHHHHHhcchh
Q 029517 168 LVEVMERSKRT 178 (192)
Q Consensus 168 i~~~i~~~~~~ 178 (192)
|.+.+.+....
T Consensus 162 l~~~~~~~~~~ 172 (199)
T cd04110 162 ITELVLRAKKD 172 (199)
T ss_pred HHHHHHHhhhc
Confidence 99988765433
No 56
>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi
Probab=99.93 E-value=1.7e-24 Score=156.37 Aligned_cols=145 Identities=21% Similarity=0.332 Sum_probs=118.3
Q ss_pred ccccHHHHHHHHhhhhccCCCCCCCCCCCCcceEEEE--E--EecCEEEEEEeCCCCcccHHHHHHhhhcCCEEEEEEeC
Q 029517 14 TKTEFHTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGR--I--EVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDA 89 (192)
Q Consensus 14 kst~~~~l~~~~~~~~~~~~~~~~~~~~~T~g~~~~~--~--~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ii~v~D~ 89 (192)
|||+++++ .. +.+...|.||+|..+.. + .+..+.+++||+||++++...+..+++++|++++|+|+
T Consensus 16 KSsl~~~~----~~------~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~ad~~i~v~d~ 85 (167)
T cd01867 16 KSCLLLRF----SE------DSFNPSFISTIGIDFKIRTIELDGKKIKLQIWDTAGQERFRTITTAYYRGAMGIILVYDI 85 (167)
T ss_pred HHHHHHHH----hh------CcCCcccccCccceEEEEEEEECCEEEEEEEEeCCchHHHHHHHHHHhCCCCEEEEEEEC
Confidence 55555555 44 55677889999987642 3 33357899999999999999999999999999999999
Q ss_pred CCcccHHHHHHHHHHHHhCCCCCCCcEEEEEeCCCCCC--CCCHHHHHhHcCccccCCcceEEEEeeecCCCCHHHHHHH
Q 029517 90 ACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPD--AVSADELARYLDLKKLDERVCMFEAVSGYDGFGIKESVEW 167 (192)
Q Consensus 90 ~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~e~~~~ 167 (192)
+++++|+.+..|+..+..... .+.|+++++||+|+.+ ....+++.+.+. ..+.+++++||++|.|++++|++
T Consensus 86 ~~~~s~~~~~~~~~~i~~~~~-~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~~v~~~~~~ 159 (167)
T cd01867 86 TDEKSFENIRNWMRNIEEHAS-EDVERMLVGNKCDMEEKRVVSKEEGEALAD-----EYGIKFLETSAKANINVEEAFFT 159 (167)
T ss_pred cCHHHHHhHHHHHHHHHHhCC-CCCcEEEEEECcccccccCCCHHHHHHHHH-----HcCCEEEEEeCCCCCCHHHHHHH
Confidence 999999999999998877532 5789999999999975 345566666665 44678999999999999999999
Q ss_pred HHHHHHh
Q 029517 168 LVEVMER 174 (192)
Q Consensus 168 i~~~i~~ 174 (192)
+.+.+.+
T Consensus 160 i~~~~~~ 166 (167)
T cd01867 160 LAKDIKK 166 (167)
T ss_pred HHHHHHh
Confidence 9998754
No 57
>cd04108 Rab36_Rab34 Rab34/Rab36 subfamily. Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further re
Probab=99.93 E-value=1.6e-24 Score=157.14 Aligned_cols=136 Identities=21% Similarity=0.327 Sum_probs=109.9
Q ss_pred CCCCCCCCCCcceEEEE--E--EecCEEEEEEeCCCCcccHHHHHHhhhcCCEEEEEEeCCCcccHHHHHHHHHHHHhCC
Q 029517 34 GLPPDRIVPTVGLNIGR--I--EVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNE 109 (192)
Q Consensus 34 ~~~~~~~~~T~g~~~~~--~--~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ii~v~D~~~~~s~~~~~~~~~~i~~~~ 109 (192)
+.|...|.||+|.++.. + .+..+++++|||||+++|...+..+++++|++++|||++++++++.+..|+..+.+..
T Consensus 23 ~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~~~~~~ 102 (170)
T cd04108 23 DVFDKNYKATIGVDFEMERFEILGVPFSLQLWDTAGQERFKCIASTYYRGAQAIIIVFDLTDVASLEHTRQWLEDALKEN 102 (170)
T ss_pred CCCCCCCCCceeeEEEEEEEEECCEEEEEEEEeCCChHHHHhhHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhc
Confidence 56778889999988752 2 3345789999999999999999999999999999999999999999999999987654
Q ss_pred CCCCCcEEEEEeCCCCCCCC----CHHHHHhHcCccccCCcceEEEEeeecCCCCHHHHHHHHHHHHHh
Q 029517 110 DLQGAPLLILANKQDLPDAV----SADELARYLDLKKLDERVCMFEAVSGYDGFGIKESVEWLVEVMER 174 (192)
Q Consensus 110 ~~~~~piiiv~nK~Dl~~~~----~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~e~~~~i~~~i~~ 174 (192)
...+.|+++|+||+|+.+.. ..++..++.. ..+.+++++||++|.|++++|+.|.+.+.+
T Consensus 103 ~~~~~~iilVgnK~Dl~~~~~~~~~~~~~~~~~~-----~~~~~~~e~Sa~~g~~v~~lf~~l~~~~~~ 166 (170)
T cd04108 103 DPSSVLLFLVGTKKDLSSPAQYALMEQDAIKLAA-----EMQAEYWSVSALSGENVREFFFRVAALTFE 166 (170)
T ss_pred CCCCCeEEEEEEChhcCccccccccHHHHHHHHH-----HcCCeEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 33457899999999986421 2333444443 335689999999999999999999987754
No 58
>cd04117 Rab15 Rab15 subfamily. Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to
Probab=99.93 E-value=1.5e-24 Score=155.92 Aligned_cols=142 Identities=21% Similarity=0.321 Sum_probs=115.3
Q ss_pred ccccHHHHHHHHhhhhccCCCCCCCCCCCCcceEEE--EEEe--cCEEEEEEeCCCCcccHHHHHHhhhcCCEEEEEEeC
Q 029517 14 TKTEFHTLLEKLKSVYSNVEGLPPDRIVPTVGLNIG--RIEV--SNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDA 89 (192)
Q Consensus 14 kst~~~~l~~~~~~~~~~~~~~~~~~~~~T~g~~~~--~~~~--~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ii~v~D~ 89 (192)
|||++++++ . +.+...+.||+|.++. .+.. ..+.+++||++|++++...+..+++.+|++++|||+
T Consensus 13 KTsli~~~~----~------~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~ 82 (161)
T cd04117 13 KTCLLCRFT----D------NEFHSSHISTIGVDFKMKTIEVDGIKVRIQIWDTAGQERYQTITKQYYRRAQGIFLVYDI 82 (161)
T ss_pred HHHHHHHHh----c------CCCCCCCCCceeeEEEEEEEEECCEEEEEEEEeCCCcHhHHhhHHHHhcCCcEEEEEEEC
Confidence 566655553 3 5566778999998765 3333 347899999999999999999999999999999999
Q ss_pred CCcccHHHHHHHHHHHHhCCCCCCCcEEEEEeCCCCCC--CCCHHHHHhHcCccccCCcceEEEEeeecCCCCHHHHHHH
Q 029517 90 ACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPD--AVSADELARYLDLKKLDERVCMFEAVSGYDGFGIKESVEW 167 (192)
Q Consensus 90 ~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~e~~~~ 167 (192)
+++++|+.+..|+..+..... .+.|+++|+||.|+.+ .+..++...+++ ..+.+++++||++|.||+++|++
T Consensus 83 ~~~~sf~~~~~~~~~~~~~~~-~~~~iilvgnK~Dl~~~~~v~~~~~~~~~~-----~~~~~~~e~Sa~~~~~v~~~f~~ 156 (161)
T cd04117 83 SSERSYQHIMKWVSDVDEYAP-EGVQKILIGNKADEEQKRQVGDEQGNKLAK-----EYGMDFFETSACTNSNIKESFTR 156 (161)
T ss_pred CCHHHHHHHHHHHHHHHHhCC-CCCeEEEEEECcccccccCCCHHHHHHHHH-----HcCCEEEEEeCCCCCCHHHHHHH
Confidence 999999999999998876532 4789999999999965 455667776665 34578999999999999999999
Q ss_pred HHHH
Q 029517 168 LVEV 171 (192)
Q Consensus 168 i~~~ 171 (192)
|.+.
T Consensus 157 l~~~ 160 (161)
T cd04117 157 LTEL 160 (161)
T ss_pred HHhh
Confidence 9864
No 59
>cd04136 Rap_like Rap-like subfamily. The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.
Probab=99.93 E-value=1.1e-24 Score=156.41 Aligned_cols=144 Identities=22% Similarity=0.338 Sum_probs=113.3
Q ss_pred ccccHHHHHHHHhhhhccCCCCCCCCCCCCcceEEEE-E--EecCEEEEEEeCCCCcccHHHHHHhhhcCCEEEEEEeCC
Q 029517 14 TKTEFHTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGR-I--EVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAA 90 (192)
Q Consensus 14 kst~~~~l~~~~~~~~~~~~~~~~~~~~~T~g~~~~~-~--~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ii~v~D~~ 90 (192)
|||++++++ . +.+...+.||++..+.. + ++..+.+++|||||+++|...+..++++++++++|||++
T Consensus 14 KTsl~~~~~----~------~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~d~~ 83 (163)
T cd04136 14 KSALTVQFV----Q------GIFVEKYDPTIEDSYRKQIEVDGQQCMLEILDTAGTEQFTAMRDLYIKNGQGFVLVYSIT 83 (163)
T ss_pred HHHHHHHHH----h------CCCCcccCCchhhhEEEEEEECCEEEEEEEEECCCccccchHHHHHhhcCCEEEEEEECC
Confidence 666666654 3 44566778888744332 3 334578999999999999999999999999999999999
Q ss_pred CcccHHHHHHHHHHHHhCCCCCCCcEEEEEeCCCCCC--CCCHHHHHhHcCccccCCcceEEEEeeecCCCCHHHHHHHH
Q 029517 91 CPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPD--AVSADELARYLDLKKLDERVCMFEAVSGYDGFGIKESVEWL 168 (192)
Q Consensus 91 ~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~e~~~~i 168 (192)
++.+++.+..|+..+.......+.|+++++||+|+.+ ....++..++.. ..+.+++++||++|.|++++|+++
T Consensus 84 ~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~~v~~l~~~l 158 (163)
T cd04136 84 SQSSFNDLQDLREQILRVKDTENVPMVLVGNKCDLEDERVVSREEGQALAR-----QWGCPFYETSAKSKINVDEVFADL 158 (163)
T ss_pred CHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccceecHHHHHHHHH-----HcCCeEEEecCCCCCCHHHHHHHH
Confidence 9999999999999888764446799999999999864 344444444443 334789999999999999999999
Q ss_pred HHHH
Q 029517 169 VEVM 172 (192)
Q Consensus 169 ~~~i 172 (192)
.+.+
T Consensus 159 ~~~~ 162 (163)
T cd04136 159 VRQI 162 (163)
T ss_pred HHhc
Confidence 8754
No 60
>cd04119 RJL RJL (RabJ-Like) subfamily. RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.
Probab=99.93 E-value=2e-24 Score=155.43 Aligned_cols=145 Identities=23% Similarity=0.389 Sum_probs=118.9
Q ss_pred ccccHHHHHHHHhhhhccCCCCCCCCCCCCcceEEEE--E--EecCEEEEEEeCCCCcccHHHHHHhhhcCCEEEEEEeC
Q 029517 14 TKTEFHTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGR--I--EVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDA 89 (192)
Q Consensus 14 kst~~~~l~~~~~~~~~~~~~~~~~~~~~T~g~~~~~--~--~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ii~v~D~ 89 (192)
|||++|+|++ +.+...+.||+|.++.. + .+..+.+++|||||++.+...+..+++.+|++|+|+|+
T Consensus 13 KTsli~~l~~----------~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~D~ 82 (168)
T cd04119 13 KSCIIKRYCE----------GRFVSKYLPTIGIDYGVKKVSVRNKEVRVNFFDLSGHPEYLEVRNEFYKDTQGVLLVYDV 82 (168)
T ss_pred HHHHHHHHHh----------CCCCCCCCCccceeEEEEEEEECCeEEEEEEEECCccHHHHHHHHHHhccCCEEEEEEEC
Confidence 6777766654 44556789999987652 3 33467899999999999999999999999999999999
Q ss_pred CCcccHHHHHHHHHHHHhCCCC----CCCcEEEEEeCCCCCC--CCCHHHHHhHcCccccCCcceEEEEeeecCCCCHHH
Q 029517 90 ACPSRFEDSKTALEKVLRNEDL----QGAPLLILANKQDLPD--AVSADELARYLDLKKLDERVCMFEAVSGYDGFGIKE 163 (192)
Q Consensus 90 ~~~~s~~~~~~~~~~i~~~~~~----~~~piiiv~nK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~e 163 (192)
+++++++.+..|+..+...... ...|+++|+||+|+.+ ....++...++. ..+.+++++||++|.|+++
T Consensus 83 ~~~~s~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~gi~~ 157 (168)
T cd04119 83 TDRQSFEALDSWLKEMKQEGGPHGNMENIVVVVCANKIDLTKHRAVSEDEGRLWAE-----SKGFKYFETSACTGEGVNE 157 (168)
T ss_pred CCHHHHHhHHHHHHHHHHhccccccCCCceEEEEEEchhcccccccCHHHHHHHHH-----HcCCeEEEEECCCCCCHHH
Confidence 9999999999999998875432 4689999999999973 456666666665 4457899999999999999
Q ss_pred HHHHHHHHHH
Q 029517 164 SVEWLVEVME 173 (192)
Q Consensus 164 ~~~~i~~~i~ 173 (192)
+|++|.+.+.
T Consensus 158 l~~~l~~~l~ 167 (168)
T cd04119 158 MFQTLFSSIV 167 (168)
T ss_pred HHHHHHHHHh
Confidence 9999998765
No 61
>smart00178 SAR Sar1p-like members of the Ras-family of small GTPases. Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus.
Probab=99.93 E-value=6.1e-24 Score=156.01 Aligned_cols=145 Identities=34% Similarity=0.520 Sum_probs=120.1
Q ss_pred HHHHHHhhhhccCCCCCCCCCCCCcceEEEEEEecCEEEEEEeCCCCcccHHHHHHhhhcCCEEEEEEeCCCcccHHHHH
Q 029517 20 TLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSK 99 (192)
Q Consensus 20 ~l~~~~~~~~~~~~~~~~~~~~~T~g~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ii~v~D~~~~~s~~~~~ 99 (192)
+|++++.. +.+ ..+.||.+.....+...++++.+||+||+..+...+..+++++|++++|+|+++++++....
T Consensus 32 sli~~l~~------~~~-~~~~~t~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~ad~ii~vvD~~~~~~~~~~~ 104 (184)
T smart00178 32 TLLHMLKN------DRL-AQHQPTQHPTSEELAIGNIKFTTFDLGGHQQARRLWKDYFPEVNGIVYLVDAYDKERFAESK 104 (184)
T ss_pred HHHHHHhc------CCC-cccCCccccceEEEEECCEEEEEEECCCCHHHHHHHHHHhCCCCEEEEEEECCcHHHHHHHH
Confidence 55566554 222 34567777777777778899999999999999999999999999999999999999999998
Q ss_pred HHHHHHHhCCCCCCCcEEEEEeCCCCCCCCCHHHHHhHcCcccc-------CCcceEEEEeeecCCCCHHHHHHHHHHH
Q 029517 100 TALEKVLRNEDLQGAPLLILANKQDLPDAVSADELARYLDLKKL-------DERVCMFEAVSGYDGFGIKESVEWLVEV 171 (192)
Q Consensus 100 ~~~~~i~~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~Sa~~~~gi~e~~~~i~~~ 171 (192)
.++..+.+.....++|+++++||+|+....+.+++.+.+.+... ..+...+++|||++|.|++++++||.+.
T Consensus 105 ~~l~~l~~~~~~~~~piliv~NK~Dl~~~~~~~~i~~~l~l~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~~~~~wl~~~ 183 (184)
T smart00178 105 RELDALLSDEELATVPFLILGNKIDAPYAASEDELRYALGLTNTTGSKGKVGVRPLEVFMCSVVRRMGYGEGFKWLSQY 183 (184)
T ss_pred HHHHHHHcChhhcCCCEEEEEeCccccCCCCHHHHHHHcCCCcccccccccCCceeEEEEeecccCCChHHHHHHHHhh
Confidence 88888876544467999999999999888888899888875432 2256789999999999999999999864
No 62
>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.
Probab=99.93 E-value=2.8e-24 Score=153.80 Aligned_cols=144 Identities=21% Similarity=0.254 Sum_probs=115.6
Q ss_pred ccccHHHHHHHHhhhhccCCCCCCCCCCCCcceEEEE---EEecCEEEEEEeCCCCcccHHHHHHhhhcCCEEEEEEeCC
Q 029517 14 TKTEFHTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGR---IEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAA 90 (192)
Q Consensus 14 kst~~~~l~~~~~~~~~~~~~~~~~~~~~T~g~~~~~---~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ii~v~D~~ 90 (192)
|||++|+|++ +.+...+.||.+..+.. ++...+.+++|||+|++++..++..++++++++++|+|++
T Consensus 14 KTsl~~~~~~----------~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~l~~~~~~~~~~~i~v~~~~ 83 (162)
T cd04138 14 KSALTIQLIQ----------NHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAIN 83 (162)
T ss_pred HHHHHHHHHh----------CCCcCCcCCcchheEEEEEEECCEEEEEEEEECCCCcchHHHHHHHHhcCCEEEEEEECC
Confidence 6777777653 44556678888765542 3333567899999999999999999999999999999999
Q ss_pred CcccHHHHHHHHHHHHhCCCCCCCcEEEEEeCCCCCC-CCCHHHHHhHcCccccCCcceEEEEeeecCCCCHHHHHHHHH
Q 029517 91 CPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPD-AVSADELARYLDLKKLDERVCMFEAVSGYDGFGIKESVEWLV 169 (192)
Q Consensus 91 ~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~e~~~~i~ 169 (192)
+..+++.+..|+..+.+.....+.|+++|+||+|+.+ ....+++.+..+ ..+.+++++||++|.|++++|+++.
T Consensus 84 ~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~gi~~l~~~l~ 158 (162)
T cd04138 84 SRKSFEDIHTYREQIKRVKDSDDVPMVLVGNKCDLAARTVSSRQGQDLAK-----SYGIPYIETSAKTRQGVEEAFYTLV 158 (162)
T ss_pred CHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccceecHHHHHHHHH-----HhCCeEEEecCCCCCCHHHHHHHHH
Confidence 9999999999999888765446799999999999975 444556656654 4467899999999999999999998
Q ss_pred HHH
Q 029517 170 EVM 172 (192)
Q Consensus 170 ~~i 172 (192)
+.+
T Consensus 159 ~~~ 161 (162)
T cd04138 159 REI 161 (162)
T ss_pred HHh
Confidence 754
No 63
>cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t
Probab=99.93 E-value=3.6e-24 Score=154.38 Aligned_cols=144 Identities=24% Similarity=0.364 Sum_probs=116.9
Q ss_pred ccccHHHHHHHHhhhhccCCCCCCCCCCCCcceEEEE--EE--ecCEEEEEEeCCCCcccHHHHHHhhhcCCEEEEEEeC
Q 029517 14 TKTEFHTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGR--IE--VSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDA 89 (192)
Q Consensus 14 kst~~~~l~~~~~~~~~~~~~~~~~~~~~T~g~~~~~--~~--~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ii~v~D~ 89 (192)
|||++++++ . +.+...+.||+|.++.. +. +..+.+++||+||++++...+..+++++|++|+|||+
T Consensus 15 KSsli~~~~----~------~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~d~ 84 (166)
T cd01869 15 KSCLLLRFA----D------DTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDV 84 (166)
T ss_pred HHHHHHHHh----c------CCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHhCcCCEEEEEEEC
Confidence 566666554 3 44556778888876642 32 3357899999999999999999999999999999999
Q ss_pred CCcccHHHHHHHHHHHHhCCCCCCCcEEEEEeCCCCCC--CCCHHHHHhHcCccccCCcceEEEEeeecCCCCHHHHHHH
Q 029517 90 ACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPD--AVSADELARYLDLKKLDERVCMFEAVSGYDGFGIKESVEW 167 (192)
Q Consensus 90 ~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~e~~~~ 167 (192)
++++++..+..|+..+.... ..+.|+++++||+|+.. .+..+++.++.. ..+++++++||++|.|++++|++
T Consensus 85 ~~~~s~~~l~~~~~~~~~~~-~~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~~v~~~~~~ 158 (166)
T cd01869 85 TDQESFNNVKQWLQEIDRYA-SENVNKLLVGNKCDLTDKRVVDYSEAQEFAD-----ELGIPFLETSAKNATNVEQAFMT 158 (166)
T ss_pred cCHHHHHhHHHHHHHHHHhC-CCCCcEEEEEEChhcccccCCCHHHHHHHHH-----HcCCeEEEEECCCCcCHHHHHHH
Confidence 99999999999999887653 24689999999999865 455566666665 45678999999999999999999
Q ss_pred HHHHHH
Q 029517 168 LVEVME 173 (192)
Q Consensus 168 i~~~i~ 173 (192)
|.+.+.
T Consensus 159 i~~~~~ 164 (166)
T cd01869 159 MAREIK 164 (166)
T ss_pred HHHHHH
Confidence 998775
No 64
>cd04111 Rab39 Rab39 subfamily. Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.93 E-value=2.5e-24 Score=161.26 Aligned_cols=149 Identities=24% Similarity=0.349 Sum_probs=121.1
Q ss_pred ccccHHHHHHHHhhhhccCCCCCCCCCCCCcceEEEE--EE---ecCEEEEEEeCCCCcccHHHHHHhhhcCCEEEEEEe
Q 029517 14 TKTEFHTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGR--IE---VSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVID 88 (192)
Q Consensus 14 kst~~~~l~~~~~~~~~~~~~~~~~~~~~T~g~~~~~--~~---~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ii~v~D 88 (192)
|||++++|++ +.+...+.||+|.++.. +. +..+.+++|||+|++.+...+..+++++|++++|||
T Consensus 15 KTsLi~~l~~----------~~~~~~~~~ti~~d~~~~~i~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~iilv~D 84 (211)
T cd04111 15 KSSLLKRFTE----------GRFAEVSDPTVGVDFFSRLIEIEPGVRIKLQLWDTAGQERFRSITRSYYRNSVGVLLVFD 84 (211)
T ss_pred HHHHHHHHHc----------CCCCCCCCceeceEEEEEEEEECCCCEEEEEEEeCCcchhHHHHHHHHhcCCcEEEEEEE
Confidence 6777777653 34455577899887653 32 235789999999999999999999999999999999
Q ss_pred CCCcccHHHHHHHHHHHHhCCCCCCCcEEEEEeCCCCCC--CCCHHHHHhHcCccccCCcceEEEEeeecCCCCHHHHHH
Q 029517 89 AACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPD--AVSADELARYLDLKKLDERVCMFEAVSGYDGFGIKESVE 166 (192)
Q Consensus 89 ~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~e~~~ 166 (192)
++++++|+.+..|+..+.+.......|+++++||+|+.+ .+..++..++.+ ..+.+++++||++|.||+++|+
T Consensus 85 ~~~~~Sf~~l~~~~~~i~~~~~~~~~~iilvgNK~Dl~~~~~v~~~~~~~~~~-----~~~~~~~e~Sak~g~~v~e~f~ 159 (211)
T cd04111 85 ITNRESFEHVHDWLEEARSHIQPHRPVFILVGHKCDLESQRQVTREEAEKLAK-----DLGMKYIETSARTGDNVEEAFE 159 (211)
T ss_pred CCCHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEccccccccccCHHHHHHHHH-----HhCCEEEEEeCCCCCCHHHHHH
Confidence 999999999999999988764435678999999999965 455666666665 4568999999999999999999
Q ss_pred HHHHHHHhcch
Q 029517 167 WLVEVMERSKR 177 (192)
Q Consensus 167 ~i~~~i~~~~~ 177 (192)
+|.+.+.+...
T Consensus 160 ~l~~~~~~~~~ 170 (211)
T cd04111 160 LLTQEIYERIK 170 (211)
T ss_pred HHHHHHHHHhh
Confidence 99998876643
No 65
>cd04109 Rab28 Rab28 subfamily. First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumbly the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs
Probab=99.92 E-value=4.7e-24 Score=160.26 Aligned_cols=147 Identities=22% Similarity=0.243 Sum_probs=119.9
Q ss_pred ccccHHHHHHHHhhhhccCCCCCCCCCCCCcceEEEE--EEe---cCEEEEEEeCCCCcccHHHHHHhhhcCCEEEEEEe
Q 029517 14 TKTEFHTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGR--IEV---SNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVID 88 (192)
Q Consensus 14 kst~~~~l~~~~~~~~~~~~~~~~~~~~~T~g~~~~~--~~~---~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ii~v~D 88 (192)
|||++++|+ . +.+...|.||+|.++.. +.. ..+.+++|||+|++.+...+..+++++|++|+|||
T Consensus 13 KSsLi~~l~----~------~~~~~~~~~T~~~d~~~~~i~~~~~~~~~~~i~Dt~G~~~~~~l~~~~~~~ad~iilV~D 82 (215)
T cd04109 13 KTSLCRRFA----K------EGFGKSYKQTIGLDFFSKRVTLPGNLNVTLQVWDIGGQSIGGKMLDKYIYGAHAVFLVYD 82 (215)
T ss_pred HHHHHHHHh----c------CCCCCCCCCceeEEEEEEEEEeCCCCEEEEEEEECCCcHHHHHHHHHHhhcCCEEEEEEE
Confidence 666666664 3 55678889999988653 332 35799999999999999999999999999999999
Q ss_pred CCCcccHHHHHHHHHHHHhCCC--CCCCcEEEEEeCCCCCC--CCCHHHHHhHcCccccCCcceEEEEeeecCCCCHHHH
Q 029517 89 AACPSRFEDSKTALEKVLRNED--LQGAPLLILANKQDLPD--AVSADELARYLDLKKLDERVCMFEAVSGYDGFGIKES 164 (192)
Q Consensus 89 ~~~~~s~~~~~~~~~~i~~~~~--~~~~piiiv~nK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~e~ 164 (192)
++++++|+.+..|+..+.+... ..+.|+++|+||+|+.+ .+..++..++.. ..+++++++||++|.||+++
T Consensus 83 ~t~~~s~~~~~~w~~~l~~~~~~~~~~~piilVgNK~DL~~~~~v~~~~~~~~~~-----~~~~~~~~iSAktg~gv~~l 157 (215)
T cd04109 83 VTNSQSFENLEDWYSMVRKVLKSSETQPLVVLVGNKTDLEHNRTVKDDKHARFAQ-----ANGMESCLVSAKTGDRVNLL 157 (215)
T ss_pred CCCHHHHHHHHHHHHHHHHhccccCCCceEEEEEECcccccccccCHHHHHHHHH-----HcCCEEEEEECCCCCCHHHH
Confidence 9999999999999998887532 13578999999999964 455666666665 44678999999999999999
Q ss_pred HHHHHHHHHhc
Q 029517 165 VEWLVEVMERS 175 (192)
Q Consensus 165 ~~~i~~~i~~~ 175 (192)
|++|.+.+.+.
T Consensus 158 f~~l~~~l~~~ 168 (215)
T cd04109 158 FQQLAAELLGV 168 (215)
T ss_pred HHHHHHHHHhc
Confidence 99999988754
No 66
>cd04112 Rab26 Rab26 subfamily. First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.92 E-value=1.7e-24 Score=159.88 Aligned_cols=147 Identities=21% Similarity=0.393 Sum_probs=117.2
Q ss_pred ccccHHHHHHHHhhhhccCCCCCC-CCCCCCcceEEEE----EEecCEEEEEEeCCCCcccHHHHHHhhhcCCEEEEEEe
Q 029517 14 TKTEFHTLLEKLKSVYSNVEGLPP-DRIVPTVGLNIGR----IEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVID 88 (192)
Q Consensus 14 kst~~~~l~~~~~~~~~~~~~~~~-~~~~~T~g~~~~~----~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ii~v~D 88 (192)
|||+++++.+ +.+. ..+.||++.++.. +++..+.++||||||++++...+..+++.+|++|+|+|
T Consensus 13 KTSli~~~~~----------~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~~i~v~D 82 (191)
T cd04112 13 KTCLLVRFKD----------GAFLNGNFIATVGIDFRNKVVTVDGVKVKLQIWDTAGQERFRSVTHAYYRDAHALLLLYD 82 (191)
T ss_pred HHHHHHHHhc----------CCCCccCcCCcccceeEEEEEEECCEEEEEEEEeCCCcHHHHHhhHHHccCCCEEEEEEE
Confidence 5666665543 3332 3678888877653 33345789999999999999889999999999999999
Q ss_pred CCCcccHHHHHHHHHHHHhCCCCCCCcEEEEEeCCCCCC--CCCHHHHHhHcCccccCCcceEEEEeeecCCCCHHHHHH
Q 029517 89 AACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPD--AVSADELARYLDLKKLDERVCMFEAVSGYDGFGIKESVE 166 (192)
Q Consensus 89 ~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~e~~~ 166 (192)
+++.++++.+..|+..+..... .++|+++++||+|+.. .+..++...... ..+.+++++||++|.|++++|+
T Consensus 83 ~~~~~s~~~~~~~~~~i~~~~~-~~~piiiv~NK~Dl~~~~~~~~~~~~~l~~-----~~~~~~~e~Sa~~~~~v~~l~~ 156 (191)
T cd04112 83 ITNKASFDNIRAWLTEIKEYAQ-EDVVIMLLGNKADMSGERVVKREDGERLAK-----EYGVPFMETSAKTGLNVELAFT 156 (191)
T ss_pred CCCHHHHHHHHHHHHHHHHhCC-CCCcEEEEEEcccchhccccCHHHHHHHHH-----HcCCeEEEEeCCCCCCHHHHHH
Confidence 9999999999999998887642 4789999999999963 445556666554 4457899999999999999999
Q ss_pred HHHHHHHhcc
Q 029517 167 WLVEVMERSK 176 (192)
Q Consensus 167 ~i~~~i~~~~ 176 (192)
+|.+.+.+..
T Consensus 157 ~l~~~~~~~~ 166 (191)
T cd04112 157 AVAKELKHRK 166 (191)
T ss_pred HHHHHHHHhc
Confidence 9999887764
No 67
>cd04134 Rho3 Rho3 subfamily. Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=99.92 E-value=1.5e-24 Score=159.92 Aligned_cols=147 Identities=19% Similarity=0.252 Sum_probs=114.4
Q ss_pred ccccHHHHHHHHhhhhccCCCCCCCCCCCCcceEEEE---EEecCEEEEEEeCCCCcccHHHHHHhhhcCCEEEEEEeCC
Q 029517 14 TKTEFHTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGR---IEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAA 90 (192)
Q Consensus 14 kst~~~~l~~~~~~~~~~~~~~~~~~~~~T~g~~~~~---~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ii~v~D~~ 90 (192)
|||++++++ . +.+...|.||++.++.. +++..+.+++|||+|++.|...+..+++.++++++|||++
T Consensus 13 KTsli~~~~----~------~~~~~~~~~t~~~~~~~~i~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~a~~~ilv~dv~ 82 (189)
T cd04134 13 KTSLLNVFT----R------GYFPQVYEPTVFENYVHDIFVDGLHIELSLWDTAGQEEFDRLRSLSYADTDVIMLCFSVD 82 (189)
T ss_pred HHHHHHHHh----c------CCCCCccCCcceeeeEEEEEECCEEEEEEEEECCCChhccccccccccCCCEEEEEEECC
Confidence 566655554 3 56667788999877653 3334578999999999999888888999999999999999
Q ss_pred CcccHHHHH-HHHHHHHhCCCCCCCcEEEEEeCCCCCCCC--------------CHHHHHhHcCccccCCcceEEEEeee
Q 029517 91 CPSRFEDSK-TALEKVLRNEDLQGAPLLILANKQDLPDAV--------------SADELARYLDLKKLDERVCMFEAVSG 155 (192)
Q Consensus 91 ~~~s~~~~~-~~~~~i~~~~~~~~~piiiv~nK~Dl~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~Sa 155 (192)
++++|+.+. .|+..+.... .+.|+++|+||+|+.... ..++..+++. ....++++++||
T Consensus 83 ~~~sf~~~~~~~~~~i~~~~--~~~piilvgNK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~----~~~~~~~~e~SA 156 (189)
T cd04134 83 SPDSLENVESKWLGEIREHC--PGVKLVLVALKCDLREARNERDDLQRYGKHTISYEEGLAVAK----RINALRYLECSA 156 (189)
T ss_pred CHHHHHHHHHHHHHHHHHhC--CCCCEEEEEEChhhccChhhHHHHhhccCCCCCHHHHHHHHH----HcCCCEEEEccC
Confidence 999999886 5888887653 479999999999997532 2233334333 122378999999
Q ss_pred cCCCCHHHHHHHHHHHHHhcc
Q 029517 156 YDGFGIKESVEWLVEVMERSK 176 (192)
Q Consensus 156 ~~~~gi~e~~~~i~~~i~~~~ 176 (192)
++|.||+++|+++.+.+....
T Consensus 157 k~~~~v~e~f~~l~~~~~~~~ 177 (189)
T cd04134 157 KLNRGVNEAFTEAARVALNVR 177 (189)
T ss_pred CcCCCHHHHHHHHHHHHhccc
Confidence 999999999999999887544
No 68
>KOG0097 consensus GTPase Rab14, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.92 E-value=1.4e-24 Score=147.42 Aligned_cols=153 Identities=20% Similarity=0.315 Sum_probs=130.8
Q ss_pred HHHHHHHhhhhccCCCCCCCCCCCCcceEEEE----EEecCEEEEEEeCCCCcccHHHHHHhhhcCCEEEEEEeCCCccc
Q 029517 19 HTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGR----IEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSR 94 (192)
Q Consensus 19 ~~l~~~~~~~~~~~~~~~~~~~~~T~g~~~~~----~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ii~v~D~~~~~s 94 (192)
.+|+++++- ..|...-+.|+|++++. +.+.+++++||||+|+++|+.....|++++.+.++|||++...+
T Consensus 25 scllhqfte------kkfmadcphtigvefgtriievsgqkiklqiwdtagqerfravtrsyyrgaagalmvyditrrst 98 (215)
T KOG0097|consen 25 SCLLHQFTE------KKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVYDITRRST 98 (215)
T ss_pred HHHHHHHHH------HHHhhcCCcccceecceeEEEecCcEEEEEEeecccHHHHHHHHHHHhccccceeEEEEehhhhh
Confidence 477777776 56666778889988874 56678999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhCCCCCCCcEEEEEeCCCCCC--CCCHHHHHhHcCccccCCcceEEEEeeecCCCCHHHHHHHHHHHH
Q 029517 95 FEDSKTALEKVLRNEDLQGAPLLILANKQDLPD--AVSADELARYLDLKKLDERVCMFEAVSGYDGFGIKESVEWLVEVM 172 (192)
Q Consensus 95 ~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~e~~~~i~~~i 172 (192)
+..+..|+........ ++.-+++++||.|+.. .+..+++.++++ .++.-|.++||++|.||++.|-+..+++
T Consensus 99 ynhlsswl~dar~ltn-pnt~i~lignkadle~qrdv~yeeak~fae-----engl~fle~saktg~nvedafle~akki 172 (215)
T KOG0097|consen 99 YNHLSSWLTDARNLTN-PNTVIFLIGNKADLESQRDVTYEEAKEFAE-----ENGLMFLEASAKTGQNVEDAFLETAKKI 172 (215)
T ss_pred hhhHHHHHhhhhccCC-CceEEEEecchhhhhhcccCcHHHHHHHHh-----hcCeEEEEecccccCcHHHHHHHHHHHH
Confidence 9999999988766532 5778999999999977 688999999998 7899999999999999999999888888
Q ss_pred Hhcchhhhhhh
Q 029517 173 ERSKRTEMLRA 183 (192)
Q Consensus 173 ~~~~~~~~~~~ 183 (192)
....+...+..
T Consensus 173 yqniqdgsldl 183 (215)
T KOG0097|consen 173 YQNIQDGSLDL 183 (215)
T ss_pred HHhhhcCcccc
Confidence 76655544443
No 69
>cd01871 Rac1_like Rac1-like subfamily. The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleoti
Probab=99.92 E-value=2e-24 Score=157.20 Aligned_cols=131 Identities=18% Similarity=0.288 Sum_probs=105.1
Q ss_pred CCCCCCCCCCcceEEE---EEEecCEEEEEEeCCCCcccHHHHHHhhhcCCEEEEEEeCCCcccHHHHH-HHHHHHHhCC
Q 029517 34 GLPPDRIVPTVGLNIG---RIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSK-TALEKVLRNE 109 (192)
Q Consensus 34 ~~~~~~~~~T~g~~~~---~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ii~v~D~~~~~s~~~~~-~~~~~i~~~~ 109 (192)
+.+...|.||++..+. .+++..+.+++|||+|++.|...+..+++++|++|+|||++++++|+.+. .|+..+....
T Consensus 24 ~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~sf~~~~~~~~~~~~~~~ 103 (174)
T cd01871 24 NAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHC 103 (174)
T ss_pred CCCCCcCCCcceeeeEEEEEECCEEEEEEEEECCCchhhhhhhhhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhC
Confidence 5667788899876544 23344578999999999999999999999999999999999999999996 5877776543
Q ss_pred CCCCCcEEEEEeCCCCCCC--------------CCHHHHHhHcCccccCCcc-eEEEEeeecCCCCHHHHHHHHHHH
Q 029517 110 DLQGAPLLILANKQDLPDA--------------VSADELARYLDLKKLDERV-CMFEAVSGYDGFGIKESVEWLVEV 171 (192)
Q Consensus 110 ~~~~~piiiv~nK~Dl~~~--------------~~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~gi~e~~~~i~~~ 171 (192)
.+.|+++|+||+|+.+. ++.++..++++ ..+ .++++|||++|.||+++|+.+.+.
T Consensus 104 --~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~-----~~~~~~~~e~Sa~~~~~i~~~f~~l~~~ 173 (174)
T cd01871 104 --PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAK-----EIGAVKYLECSALTQKGLKTVFDEAIRA 173 (174)
T ss_pred --CCCCEEEEeeChhhccChhhHHHHhhccCCCCCHHHHHHHHH-----HcCCcEEEEecccccCCHHHHHHHHHHh
Confidence 47999999999999542 34455555554 223 589999999999999999999764
No 70
>cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases. Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu
Probab=99.92 E-value=7.1e-24 Score=151.61 Aligned_cols=146 Identities=38% Similarity=0.701 Sum_probs=122.2
Q ss_pred ccccHHHHHHHHhhhhccCCCCCCCCCCCCcceEEEEEEecCEEEEEEeCCCCcccHHHHHHhhhcCCEEEEEEeCCCcc
Q 029517 14 TKTEFHTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPS 93 (192)
Q Consensus 14 kst~~~~l~~~~~~~~~~~~~~~~~~~~~T~g~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ii~v~D~~~~~ 93 (192)
|||+++++++.- ...+.||.|..+..+....+.+.+||+||++.+...+..+++.+|++++|+|+++++
T Consensus 12 Kssli~~~~~~~-----------~~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~D~~~~~ 80 (158)
T cd00878 12 KTTILYKLKLGE-----------VVTTIPTIGFNVETVEYKNVSFTVWDVGGQDKIRPLWKHYYENTNGIIFVVDSSDRE 80 (158)
T ss_pred HHHHHHHHhcCC-----------CCCCCCCcCcceEEEEECCEEEEEEECCCChhhHHHHHHHhccCCEEEEEEECCCHH
Confidence 677777666442 345688899888888888899999999999999999999999999999999999999
Q ss_pred cHHHHHHHHHHHHhCCCCCCCcEEEEEeCCCCCCCCCHHHHHhHcCccccCCcceEEEEeeecCCCCHHHHHHHHHH
Q 029517 94 RFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAVSADELARYLDLKKLDERVCMFEAVSGYDGFGIKESVEWLVE 170 (192)
Q Consensus 94 s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~e~~~~i~~ 170 (192)
++..+..++..+.......+.|+++++||+|+......+++.+.+..........+++++||++|.|++++|++|..
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~~~~~l~~ 157 (158)
T cd00878 81 RIEEAKEELHKLLNEEELKGVPLLIFANKQDLPGALSVSELIEKLGLEKILGRRWHIQPCSAVTGDGLDEGLDWLLQ 157 (158)
T ss_pred HHHHHHHHHHHHHhCcccCCCcEEEEeeccCCccccCHHHHHHhhChhhccCCcEEEEEeeCCCCCCHHHHHHHHhh
Confidence 99999999988887654468999999999999876667777777653323345689999999999999999999875
No 71
>PLN03110 Rab GTPase; Provisional
Probab=99.92 E-value=5.6e-24 Score=159.96 Aligned_cols=138 Identities=17% Similarity=0.268 Sum_probs=114.6
Q ss_pred CCCCCCCCCCcceEEEE--EE--ecCEEEEEEeCCCCcccHHHHHHhhhcCCEEEEEEeCCCcccHHHHHHHHHHHHhCC
Q 029517 34 GLPPDRIVPTVGLNIGR--IE--VSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNE 109 (192)
Q Consensus 34 ~~~~~~~~~T~g~~~~~--~~--~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ii~v~D~~~~~s~~~~~~~~~~i~~~~ 109 (192)
+.+...+.||+|.++.. +. +..+.+++||++|++++...+..++++++++|+|||++++.+|+.+..|+..+....
T Consensus 35 ~~~~~~~~~t~g~~~~~~~v~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~ 114 (216)
T PLN03110 35 NEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVQRWLRELRDHA 114 (216)
T ss_pred CCCCCCCCCceeEEEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhCCCCEEEEEEECCChHHHHHHHHHHHHHHHhC
Confidence 45566778999988753 33 345799999999999999999999999999999999999999999999999887654
Q ss_pred CCCCCcEEEEEeCCCCCC--CCCHHHHHhHcCccccCCcceEEEEeeecCCCCHHHHHHHHHHHHHhcch
Q 029517 110 DLQGAPLLILANKQDLPD--AVSADELARYLDLKKLDERVCMFEAVSGYDGFGIKESVEWLVEVMERSKR 177 (192)
Q Consensus 110 ~~~~~piiiv~nK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~e~~~~i~~~i~~~~~ 177 (192)
. .++|+++++||+|+.. .+..++...+.. ..+++++++||++|.|++++|+++.+.+.+...
T Consensus 115 ~-~~~piiiv~nK~Dl~~~~~~~~~~~~~l~~-----~~~~~~~e~SA~~g~~v~~lf~~l~~~i~~~~~ 178 (216)
T PLN03110 115 D-SNIVIMMAGNKSDLNHLRSVAEEDGQALAE-----KEGLSFLETSALEATNVEKAFQTILLEIYHIIS 178 (216)
T ss_pred C-CCCeEEEEEEChhcccccCCCHHHHHHHHH-----HcCCEEEEEeCCCCCCHHHHHHHHHHHHHHHhh
Confidence 3 5799999999999865 345556665554 457899999999999999999999998876543
No 72
>cd04125 RabA_like RabA-like subfamily. RabA was first identified in D. discoideum, where its expression levels were compared to other Rabs in growing and developing cells. The RabA mRNA levels were below the level of detection by Northern blot analysis, suggesting a very low level of expression. The function of RabA remains unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.92 E-value=6.2e-24 Score=156.36 Aligned_cols=149 Identities=23% Similarity=0.343 Sum_probs=119.4
Q ss_pred ccccHHHHHHHHhhhhccCCCCCCCCCCCCcceEEE--E--EEecCEEEEEEeCCCCcccHHHHHHhhhcCCEEEEEEeC
Q 029517 14 TKTEFHTLLEKLKSVYSNVEGLPPDRIVPTVGLNIG--R--IEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDA 89 (192)
Q Consensus 14 kst~~~~l~~~~~~~~~~~~~~~~~~~~~T~g~~~~--~--~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ii~v~D~ 89 (192)
|||++++|+ . +.+...|.||+|.++. . +++..+.+++||++|++.+...+..+++++|++++|||+
T Consensus 13 KSsli~~~~----~------~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~iilv~d~ 82 (188)
T cd04125 13 KSSLLKRFT----E------DEFSESTKSTIGVDFKIKTVYIENKIIKLQIWDTNGQERFRSLNNSYYRGAHGYLLVYDV 82 (188)
T ss_pred HHHHHHHHh----c------CCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCcHHHHhhHHHHccCCCEEEEEEEC
Confidence 666666654 3 4556668899987654 2 333457899999999999999999999999999999999
Q ss_pred CCcccHHHHHHHHHHHHhCCCCCCCcEEEEEeCCCCCC--CCCHHHHHhHcCccccCCcceEEEEeeecCCCCHHHHHHH
Q 029517 90 ACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPD--AVSADELARYLDLKKLDERVCMFEAVSGYDGFGIKESVEW 167 (192)
Q Consensus 90 ~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~e~~~~ 167 (192)
+++++++.+..|+..+..... .+.|+++++||+|+.+ .++.++...++. ..+++++++||++|.|++++|++
T Consensus 83 ~~~~s~~~i~~~~~~i~~~~~-~~~~~ivv~nK~Dl~~~~~v~~~~~~~~~~-----~~~~~~~evSa~~~~~i~~~f~~ 156 (188)
T cd04125 83 TDQESFENLKFWINEINRYAR-ENVIKVIVANKSDLVNNKVVDSNIAKSFCD-----SLNIPFFETSAKQSINVEEAFIL 156 (188)
T ss_pred cCHHHHHHHHHHHHHHHHhCC-CCCeEEEEEECCCCcccccCCHHHHHHHHH-----HcCCeEEEEeCCCCCCHHHHHHH
Confidence 999999999999998876532 4589999999999874 445556655554 34668999999999999999999
Q ss_pred HHHHHHhcchh
Q 029517 168 LVEVMERSKRT 178 (192)
Q Consensus 168 i~~~i~~~~~~ 178 (192)
+.+.+.+....
T Consensus 157 l~~~~~~~~~~ 167 (188)
T cd04125 157 LVKLIIKRLEE 167 (188)
T ss_pred HHHHHHHHhhc
Confidence 99988765433
No 73
>cd04152 Arl4_Arl7 Arl4/Arl7 subfamily. Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily.
Probab=99.92 E-value=1.6e-23 Score=153.67 Aligned_cols=152 Identities=36% Similarity=0.586 Sum_probs=118.3
Q ss_pred ccccHHHHHHHHhhhhccCCCCCCCCCCCCcceEEEEEEe-----cCEEEEEEeCCCCcccHHHHHHhhhcCCEEEEEEe
Q 029517 14 TKTEFHTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEV-----SNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVID 88 (192)
Q Consensus 14 kst~~~~l~~~~~~~~~~~~~~~~~~~~~T~g~~~~~~~~-----~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ii~v~D 88 (192)
|||+++++.. +.+.. +.||.|.+...... ..+.+.+|||||++++...+..+++++|++++|+|
T Consensus 16 KTsli~~~~~----------~~~~~-~~~t~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~D 84 (183)
T cd04152 16 KTTVLYRLKF----------NEFVN-TVPTKGFNTEKIKVSLGNSKGITFHFWDVGGQEKLRPLWKSYTRCTDGIVFVVD 84 (183)
T ss_pred HHHHHHHHhc----------CCcCC-cCCccccceeEEEeeccCCCceEEEEEECCCcHhHHHHHHHHhccCCEEEEEEE
Confidence 6677666643 22333 36888876654332 46899999999999999999999999999999999
Q ss_pred CCCcccHHHHHHHHHHHHhCCCCCCCcEEEEEeCCCCCCCCCHHHHHhHcCccccC-CcceEEEEeeecCCCCHHHHHHH
Q 029517 89 AACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAVSADELARYLDLKKLD-ERVCMFEAVSGYDGFGIKESVEW 167 (192)
Q Consensus 89 ~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~-~~~~~~~~~Sa~~~~gi~e~~~~ 167 (192)
++++.+++.+..|+..+.......++|+++++||+|+.+....+++...+.+.... ...++++++||++|.|+++++++
T Consensus 85 ~~~~~~~~~~~~~~~~i~~~~~~~~~p~iiv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi~~l~~~ 164 (183)
T cd04152 85 SVDVERMEEAKTELHKITRFSENQGVPVLVLANKQDLPNALSVSEVEKLLALHELSASTPWHVQPACAIIGEGLQEGLEK 164 (183)
T ss_pred CCCHHHHHHHHHHHHHHHhhhhcCCCcEEEEEECcCccccCCHHHHHHHhCccccCCCCceEEEEeecccCCCHHHHHHH
Confidence 99998999988888888765444579999999999998766667776666533222 23467899999999999999999
Q ss_pred HHHHHHhcc
Q 029517 168 LVEVMERSK 176 (192)
Q Consensus 168 i~~~i~~~~ 176 (192)
|.+.+.+.+
T Consensus 165 l~~~l~~~~ 173 (183)
T cd04152 165 LYEMILKRR 173 (183)
T ss_pred HHHHHHHHH
Confidence 999886543
No 74
>cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily. This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali
Probab=99.92 E-value=5.1e-24 Score=153.02 Aligned_cols=144 Identities=19% Similarity=0.268 Sum_probs=114.7
Q ss_pred ccccHHHHHHHHhhhhccCCCCCCCCCCCCcceEEEE---EEecCEEEEEEeCCCCcccHHHHHHhhhcCCEEEEEEeCC
Q 029517 14 TKTEFHTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGR---IEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAA 90 (192)
Q Consensus 14 kst~~~~l~~~~~~~~~~~~~~~~~~~~~T~g~~~~~---~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ii~v~D~~ 90 (192)
|||+++++++. .+...+.||.+..+.. +++..+.+++|||||++++...+..+++.+|++++|+|++
T Consensus 15 Ktsl~~~~~~~----------~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~d~~ 84 (164)
T cd04145 15 KSALTIQFIQS----------YFVTDYDPTIEDSYTKQCEIDGQWAILDILDTAGQEEFSAMREQYMRTGEGFLLVFSVT 84 (164)
T ss_pred HHHHHHHHHhC----------CCCcccCCCccceEEEEEEECCEEEEEEEEECCCCcchhHHHHHHHhhCCEEEEEEECC
Confidence 67777777642 3345667777654432 3344578999999999999999999999999999999999
Q ss_pred CcccHHHHHHHHHHHHhCCCCCCCcEEEEEeCCCCCC--CCCHHHHHhHcCccccCCcceEEEEeeecCCCCHHHHHHHH
Q 029517 91 CPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPD--AVSADELARYLDLKKLDERVCMFEAVSGYDGFGIKESVEWL 168 (192)
Q Consensus 91 ~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~e~~~~i 168 (192)
+..+++.+..|+..+.+.....+.|+++++||+|+.. ....++..++++ ..+++++++||++|.||+++|++|
T Consensus 85 ~~~s~~~~~~~~~~~~~~~~~~~~piiiv~NK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~~i~~l~~~l 159 (164)
T cd04145 85 DRGSFEEVDKFHTQILRVKDRDEFPMILVGNKADLEHQRKVSREEGQELAR-----KLKIPYIETSAKDRLNVDKAFHDL 159 (164)
T ss_pred CHHHHHHHHHHHHHHHHHhCCCCCCEEEEeeCccccccceecHHHHHHHHH-----HcCCcEEEeeCCCCCCHHHHHHHH
Confidence 9999999999998887754335789999999999865 344556666554 445789999999999999999999
Q ss_pred HHHH
Q 029517 169 VEVM 172 (192)
Q Consensus 169 ~~~i 172 (192)
.+.+
T Consensus 160 ~~~~ 163 (164)
T cd04145 160 VRVI 163 (164)
T ss_pred HHhh
Confidence 8764
No 75
>cd04156 ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h
Probab=99.92 E-value=9.1e-24 Score=151.29 Aligned_cols=146 Identities=34% Similarity=0.639 Sum_probs=115.8
Q ss_pred ccccHHHHHHHHhhhhccCCCCCCCCCCCCcceEEEEEEe-cCEEEEEEeCCCCcccHHHHHHhhhcCCEEEEEEeCCCc
Q 029517 14 TKTEFHTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEV-SNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACP 92 (192)
Q Consensus 14 kst~~~~l~~~~~~~~~~~~~~~~~~~~~T~g~~~~~~~~-~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ii~v~D~~~~ 92 (192)
|||++++|.+. .+. .+.||+|.++..+.. ..+.+.+||+||++.+...+..+++.+|++++|+|++++
T Consensus 12 KTsl~~~~~~~----------~~~-~~~~t~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~iv~v~D~~~~ 80 (160)
T cd04156 12 KSTLLYKLKHA----------ELV-TTIPTVGFNVEMLQLEKHLSLTVWDVGGQEKMRTVWKCYLENTDGLVYVVDSSDE 80 (160)
T ss_pred HHHHHHHHhcC----------Ccc-cccCccCcceEEEEeCCceEEEEEECCCCHhHHHHHHHHhccCCEEEEEEECCcH
Confidence 67777777543 222 346888877766654 357999999999999999999999999999999999999
Q ss_pred ccHHHHHHHHHHHHhCCCCCCCcEEEEEeCCCCCCCCCHHHHHhHcCccccC-CcceEEEEeeecCCCCHHHHHHHHHH
Q 029517 93 SRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAVSADELARYLDLKKLD-ERVCMFEAVSGYDGFGIKESVEWLVE 170 (192)
Q Consensus 93 ~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~-~~~~~~~~~Sa~~~~gi~e~~~~i~~ 170 (192)
.++..+..|+..+.+.....+.|+++++||+|+......+++...+...... ..+++++++||++|.||+++|++|.+
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~~~~~i~~ 159 (160)
T cd04156 81 ARLDESQKELKHILKNEHIKGVPVVLLANKQDLPGALTAEEITRRFKLKKYCSDRDWYVQPCSAVTGEGLAEAFRKLAS 159 (160)
T ss_pred HHHHHHHHHHHHHHhchhhcCCCEEEEEECcccccCcCHHHHHHHcCCcccCCCCcEEEEecccccCCChHHHHHHHhc
Confidence 9999999998888765433579999999999997666667776665432222 34678999999999999999999864
No 76
>cd04176 Rap2 Rap2 subgroup. The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, incl
Probab=99.92 E-value=5e-24 Score=153.18 Aligned_cols=144 Identities=22% Similarity=0.289 Sum_probs=111.9
Q ss_pred ccccHHHHHHHHhhhhccCCCCCCCCCCCCcceEEE-E--EEecCEEEEEEeCCCCcccHHHHHHhhhcCCEEEEEEeCC
Q 029517 14 TKTEFHTLLEKLKSVYSNVEGLPPDRIVPTVGLNIG-R--IEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAA 90 (192)
Q Consensus 14 kst~~~~l~~~~~~~~~~~~~~~~~~~~~T~g~~~~-~--~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ii~v~D~~ 90 (192)
|||++++++ . +.+...+.||++..+. . +++..+.+++|||||+++|...+..+++++|++++|+|++
T Consensus 14 KTsl~~~~~----~------~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~i~v~d~~ 83 (163)
T cd04176 14 KSALTVQFV----S------GTFIEKYDPTIEDFYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFIVVYSLV 83 (163)
T ss_pred HHHHHHHHH----c------CCCCCCCCCchhheEEEEEEECCEEEEEEEEECCCcccccchHHHHHhhCCEEEEEEECC
Confidence 566665554 3 4555667788763222 2 3344568999999999999999999999999999999999
Q ss_pred CcccHHHHHHHHHHHHhCCCCCCCcEEEEEeCCCCCC--CCCHHHHHhHcCccccCCcceEEEEeeecCCCCHHHHHHHH
Q 029517 91 CPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPD--AVSADELARYLDLKKLDERVCMFEAVSGYDGFGIKESVEWL 168 (192)
Q Consensus 91 ~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~e~~~~i 168 (192)
++.+++++..|+..+.+.....++|+++|+||+|+.. .+..++...+.. ..+.+++++||++|.|++++|.++
T Consensus 84 ~~~s~~~~~~~~~~~~~~~~~~~~piviv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~~v~~l~~~l 158 (163)
T cd04176 84 NQQTFQDIKPMRDQIVRVKGYEKVPIILVGNKVDLESEREVSSAEGRALAE-----EWGCPFMETSAKSKTMVNELFAEI 158 (163)
T ss_pred CHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccchhcCccCHHHHHHHHH-----HhCCEEEEecCCCCCCHHHHHHHH
Confidence 9999999999999888754446799999999999854 334444444443 335689999999999999999999
Q ss_pred HHHH
Q 029517 169 VEVM 172 (192)
Q Consensus 169 ~~~i 172 (192)
.+.+
T Consensus 159 ~~~l 162 (163)
T cd04176 159 VRQM 162 (163)
T ss_pred HHhc
Confidence 8754
No 77
>PF00071 Ras: Ras family; InterPro: IPR001806 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction; PDB: 1M7B_A 2V55_B 3EG5_C 3LAW_A 1YHN_A 1T91_B 1HE8_B 3SEA_B 3T5G_A 1XTS_A ....
Probab=99.92 E-value=4.3e-24 Score=153.27 Aligned_cols=144 Identities=26% Similarity=0.455 Sum_probs=123.5
Q ss_pred ccccHHHHHHHHhhhhccCCCCCCCCCCCCcceEEEE--EE--ecCEEEEEEeCCCCcccHHHHHHhhhcCCEEEEEEeC
Q 029517 14 TKTEFHTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGR--IE--VSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDA 89 (192)
Q Consensus 14 kst~~~~l~~~~~~~~~~~~~~~~~~~~~T~g~~~~~--~~--~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ii~v~D~ 89 (192)
|||++++| .+ +.+...+.||+|.+... +. ...+.+++||++|+++|......+++++|++|+|||.
T Consensus 12 Ktsl~~~~----~~------~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ii~fd~ 81 (162)
T PF00071_consen 12 KTSLINRL----IN------GEFPENYIPTIGIDSYSKEVSIDGKPVNLEIWDTSGQERFDSLRDIFYRNSDAIIIVFDV 81 (162)
T ss_dssp HHHHHHHH----HH------SSTTSSSETTSSEEEEEEEEEETTEEEEEEEEEETTSGGGHHHHHHHHTTESEEEEEEET
T ss_pred HHHHHHHH----Hh------hccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 55555555 44 55678899999888764 22 3467899999999999999999999999999999999
Q ss_pred CCcccHHHHHHHHHHHHhCCCCCCCcEEEEEeCCCCCC--CCCHHHHHhHcCccccCCcceEEEEeeecCCCCHHHHHHH
Q 029517 90 ACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPD--AVSADELARYLDLKKLDERVCMFEAVSGYDGFGIKESVEW 167 (192)
Q Consensus 90 ~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~e~~~~ 167 (192)
+++++|+.+..|+..+..... .+.|+++++||.|+.+ .++.+++.+++. ..+.+|+++||+++.||.++|..
T Consensus 82 ~~~~S~~~~~~~~~~i~~~~~-~~~~iivvg~K~D~~~~~~v~~~~~~~~~~-----~~~~~~~e~Sa~~~~~v~~~f~~ 155 (162)
T PF00071_consen 82 TDEESFENLKKWLEEIQKYKP-EDIPIIVVGNKSDLSDEREVSVEEAQEFAK-----ELGVPYFEVSAKNGENVKEIFQE 155 (162)
T ss_dssp TBHHHHHTHHHHHHHHHHHST-TTSEEEEEEETTTGGGGSSSCHHHHHHHHH-----HTTSEEEEEBTTTTTTHHHHHHH
T ss_pred ccccccccccccccccccccc-ccccceeeeccccccccccchhhHHHHHHH-----HhCCEEEEEECCCCCCHHHHHHH
Confidence 999999999999999988754 4689999999999986 778888888887 55699999999999999999999
Q ss_pred HHHHHH
Q 029517 168 LVEVME 173 (192)
Q Consensus 168 i~~~i~ 173 (192)
+++.++
T Consensus 156 ~i~~i~ 161 (162)
T PF00071_consen 156 LIRKIL 161 (162)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 999875
No 78
>smart00173 RAS Ras subfamily of RAS small GTPases. Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades
Probab=99.92 E-value=9e-24 Score=151.90 Aligned_cols=146 Identities=21% Similarity=0.290 Sum_probs=115.2
Q ss_pred ccccHHHHHHHHhhhhccCCCCCCCCCCCCcceEEEE---EEecCEEEEEEeCCCCcccHHHHHHhhhcCCEEEEEEeCC
Q 029517 14 TKTEFHTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGR---IEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAA 90 (192)
Q Consensus 14 kst~~~~l~~~~~~~~~~~~~~~~~~~~~T~g~~~~~---~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ii~v~D~~ 90 (192)
|||++|+|++. .+...+.||++..+.. ++...+.+++|||||++++...+..+++.+|++++|+|++
T Consensus 13 KTsli~~~~~~----------~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~ 82 (164)
T smart00173 13 KSALTIQFVQG----------HFVDDYDPTIEDSYRKQIEIDGEVCLLDILDTAGQEEFSAMRDQYMRTGEGFLLVYSIT 82 (164)
T ss_pred HHHHHHHHHhC----------cCCcccCCchhhhEEEEEEECCEEEEEEEEECCCcccchHHHHHHHhhCCEEEEEEECC
Confidence 67777777643 2344556666644332 3334578999999999999999999999999999999999
Q ss_pred CcccHHHHHHHHHHHHhCCCCCCCcEEEEEeCCCCCC--CCCHHHHHhHcCccccCCcceEEEEeeecCCCCHHHHHHHH
Q 029517 91 CPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPD--AVSADELARYLDLKKLDERVCMFEAVSGYDGFGIKESVEWL 168 (192)
Q Consensus 91 ~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~e~~~~i 168 (192)
++++++.+..|...+.+.....+.|+++++||+|+.. ..+.+++.++.+ ..+.+++++||++|.|++++|++|
T Consensus 83 ~~~s~~~~~~~~~~i~~~~~~~~~pii~v~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~~i~~l~~~l 157 (164)
T smart00173 83 DRQSFEEIKKFREQILRVKDRDDVPIVLVGNKCDLESERVVSTEEGKELAR-----QWGCPFLETSAKERVNVDEAFYDL 157 (164)
T ss_pred CHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccceEcHHHHHHHHH-----HcCCEEEEeecCCCCCHHHHHHHH
Confidence 9999999999988887764445789999999999965 344455555554 345789999999999999999999
Q ss_pred HHHHHh
Q 029517 169 VEVMER 174 (192)
Q Consensus 169 ~~~i~~ 174 (192)
.+.+.+
T Consensus 158 ~~~~~~ 163 (164)
T smart00173 158 VREIRK 163 (164)
T ss_pred HHHHhh
Confidence 987653
No 79
>cd04106 Rab23_lke Rab23-like subfamily. Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G
Probab=99.92 E-value=9.9e-24 Score=151.33 Aligned_cols=141 Identities=23% Similarity=0.363 Sum_probs=114.8
Q ss_pred ccccHHHHHHHHhhhhccCCCCCCCCCCCCcceEEEE--EE----ecCEEEEEEeCCCCcccHHHHHHhhhcCCEEEEEE
Q 029517 14 TKTEFHTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGR--IE----VSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVI 87 (192)
Q Consensus 14 kst~~~~l~~~~~~~~~~~~~~~~~~~~~T~g~~~~~--~~----~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ii~v~ 87 (192)
|||+++++. . +.+...+.||++.++.. +. ...+.+++|||||++++...+..+++++|++++|+
T Consensus 13 KTsl~~~~~----~------~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~v~v~ 82 (162)
T cd04106 13 KSSMIQRFV----K------GIFTKDYKKTIGVDFLEKQIFLRQSDEDVRLMLWDTAGQEEFDAITKAYYRGAQACILVF 82 (162)
T ss_pred HHHHHHHHh----c------CCCCCCCCCcEEEEEEEEEEEEcCCCCEEEEEEeeCCchHHHHHhHHHHhcCCCEEEEEE
Confidence 566666554 3 44566778999988753 22 33578999999999999999999999999999999
Q ss_pred eCCCcccHHHHHHHHHHHHhCCCCCCCcEEEEEeCCCCCC--CCCHHHHHhHcCccccCCcceEEEEeeecCCCCHHHHH
Q 029517 88 DAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPD--AVSADELARYLDLKKLDERVCMFEAVSGYDGFGIKESV 165 (192)
Q Consensus 88 D~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~e~~ 165 (192)
|++++++++.+..|+..+.... .++|+++|+||+|+.. .+..+++.++.+ ..+++++++||++|.|++++|
T Consensus 83 d~~~~~s~~~l~~~~~~~~~~~--~~~p~iiv~nK~Dl~~~~~v~~~~~~~~~~-----~~~~~~~~~Sa~~~~~v~~l~ 155 (162)
T cd04106 83 STTDRESFEAIESWKEKVEAEC--GDIPMVLVQTKIDLLDQAVITNEEAEALAK-----RLQLPLFRTSVKDDFNVTELF 155 (162)
T ss_pred ECCCHHHHHHHHHHHHHHHHhC--CCCCEEEEEEChhcccccCCCHHHHHHHHH-----HcCCeEEEEECCCCCCHHHHH
Confidence 9999999999999998887643 5799999999999865 455566666665 446789999999999999999
Q ss_pred HHHHHH
Q 029517 166 EWLVEV 171 (192)
Q Consensus 166 ~~i~~~ 171 (192)
++|.+.
T Consensus 156 ~~l~~~ 161 (162)
T cd04106 156 EYLAEK 161 (162)
T ss_pred HHHHHh
Confidence 999753
No 80
>cd04124 RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b
Probab=99.92 E-value=1.3e-23 Score=150.96 Aligned_cols=144 Identities=19% Similarity=0.290 Sum_probs=113.0
Q ss_pred ccccHHHHHHHHhhhhccCCCCCCCCCCCCcceEEEE----EEecCEEEEEEeCCCCcccHHHHHHhhhcCCEEEEEEeC
Q 029517 14 TKTEFHTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGR----IEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDA 89 (192)
Q Consensus 14 kst~~~~l~~~~~~~~~~~~~~~~~~~~~T~g~~~~~----~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ii~v~D~ 89 (192)
|||+++++++ +.+...+.+|.+..+.. ++...+.+++|||+|+++|...+..+++++|++|+|+|+
T Consensus 13 KTsli~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~ 82 (161)
T cd04124 13 KSKLVERFLM----------DGYEPQQLSTYALTLYKHNAKFEGKTILVDFWDTAGQERFQTMHASYYHKAHACILVFDV 82 (161)
T ss_pred HHHHHHHHHh----------CCCCCCcCCceeeEEEEEEEEECCEEEEEEEEeCCCchhhhhhhHHHhCCCCEEEEEEEC
Confidence 6677666653 34555567777765543 334567899999999999999999999999999999999
Q ss_pred CCcccHHHHHHHHHHHHhCCCCCCCcEEEEEeCCCCCCCCCHHHHHhHcCccccCCcceEEEEeeecCCCCHHHHHHHHH
Q 029517 90 ACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAVSADELARYLDLKKLDERVCMFEAVSGYDGFGIKESVEWLV 169 (192)
Q Consensus 90 ~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~e~~~~i~ 169 (192)
+++.+++.+..|+..+.+.. .+.|+++++||+|+.... .++..++.. ..+++++++||++|.|++++|+.+.
T Consensus 83 ~~~~s~~~~~~~~~~i~~~~--~~~p~ivv~nK~Dl~~~~-~~~~~~~~~-----~~~~~~~~~Sa~~~~gv~~l~~~l~ 154 (161)
T cd04124 83 TRKITYKNLSKWYEELREYR--PEIPCIVVANKIDLDPSV-TQKKFNFAE-----KHNLPLYYVSAADGTNVVKLFQDAI 154 (161)
T ss_pred CCHHHHHHHHHHHHHHHHhC--CCCcEEEEEECccCchhH-HHHHHHHHH-----HcCCeEEEEeCCCCCCHHHHHHHHH
Confidence 99999999999999887653 478999999999985432 233333332 3357899999999999999999999
Q ss_pred HHHHhc
Q 029517 170 EVMERS 175 (192)
Q Consensus 170 ~~i~~~ 175 (192)
+.+.+.
T Consensus 155 ~~~~~~ 160 (161)
T cd04124 155 KLAVSY 160 (161)
T ss_pred HHHHhc
Confidence 877654
No 81
>cd01873 RhoBTB RhoBTB subfamily. Members of the RhoBTB subfamily of Rho GTPases are present in vertebrates, Drosophila, and Dictyostelium. RhoBTB proteins are characterized by a modular organization, consisting of a GTPase domain, a proline rich region, a tandem of two BTB (Broad-Complex, Tramtrack, and Bric a brac) domains, and a C-terminal region of unknown function. RhoBTB proteins may act as docking points for multiple components participating in signal transduction cascades. RhoBTB genes appeared upregulated in some cancer cell lines, suggesting a participation of RhoBTB proteins in the pathogenesis of particular tumors. Note that the Dictyostelium RacA GTPase domain is more closely related to Rac proteins than to RhoBTB proteins, where RacA actually belongs. Thus, the Dictyostelium RacA is not included here. Most Rho proteins contain a lipid modification site at the C-terminus; however, RhoBTB is one of few Rho subfamilies that lack this feature.
Probab=99.92 E-value=5e-24 Score=157.68 Aligned_cols=129 Identities=17% Similarity=0.184 Sum_probs=104.4
Q ss_pred CCCCCCCCCCcce-E-EE-----------EEEecCEEEEEEeCCCCcccHHHHHHhhhcCCEEEEEEeCCCcccHHHHH-
Q 029517 34 GLPPDRIVPTVGL-N-IG-----------RIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSK- 99 (192)
Q Consensus 34 ~~~~~~~~~T~g~-~-~~-----------~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ii~v~D~~~~~s~~~~~- 99 (192)
+.+...|.||+|. + +. .+++..+++++|||+|++.+ ....+++++|++|+|||++++.+|+.+.
T Consensus 31 ~~f~~~~~pTi~~~~~~~~~~~~~~~~~~~~~~~~v~l~iwDTaG~~~~--~~~~~~~~ad~iilv~d~t~~~Sf~~~~~ 108 (195)
T cd01873 31 YQLLATHVPTVWAIDQYRVCQEVLERSRDVVDGVSVSLRLWDTFGDHDK--DRRFAYGRSDVVLLCFSIASPNSLRNVKT 108 (195)
T ss_pred ccCccccCCceecccceeEEeeeccccceeeCCEEEEEEEEeCCCChhh--hhcccCCCCCEEEEEEECCChhHHHHHHH
Confidence 4567788999973 2 21 23455789999999999753 4456889999999999999999999997
Q ss_pred HHHHHHHhCCCCCCCcEEEEEeCCCCCC---------------------CCCHHHHHhHcCccccCCcceEEEEeeecCC
Q 029517 100 TALEKVLRNEDLQGAPLLILANKQDLPD---------------------AVSADELARYLDLKKLDERVCMFEAVSGYDG 158 (192)
Q Consensus 100 ~~~~~i~~~~~~~~~piiiv~nK~Dl~~---------------------~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 158 (192)
.|+..+.... .+.|+++|+||+|+.. .++.+++.++++ ..+++|+||||++|
T Consensus 109 ~w~~~i~~~~--~~~piilvgNK~DL~~~~~~~~~~~~~~~~~~~~~~~~V~~~e~~~~a~-----~~~~~~~E~SAkt~ 181 (195)
T cd01873 109 MWYPEIRHFC--PRVPVILVGCKLDLRYADLDEVNRARRPLARPIKNADILPPETGRAVAK-----ELGIPYYETSVVTQ 181 (195)
T ss_pred HHHHHHHHhC--CCCCEEEEEEchhccccccchhhhcccccccccccCCccCHHHHHHHHH-----HhCCEEEEcCCCCC
Confidence 5888887654 4789999999999852 566778888876 56779999999999
Q ss_pred CCHHHHHHHHHHH
Q 029517 159 FGIKESVEWLVEV 171 (192)
Q Consensus 159 ~gi~e~~~~i~~~ 171 (192)
.||+++|+.+++.
T Consensus 182 ~~V~e~F~~~~~~ 194 (195)
T cd01873 182 FGVKDVFDNAIRA 194 (195)
T ss_pred CCHHHHHHHHHHh
Confidence 9999999998864
No 82
>cd04116 Rab9 Rab9 subfamily. Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CX
Probab=99.92 E-value=1.4e-23 Score=151.92 Aligned_cols=143 Identities=18% Similarity=0.325 Sum_probs=116.2
Q ss_pred ccccHHHHHHHHhhhhccCCCCCCCCCCCCcceEEEE----EEecCEEEEEEeCCCCcccHHHHHHhhhcCCEEEEEEeC
Q 029517 14 TKTEFHTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGR----IEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDA 89 (192)
Q Consensus 14 kst~~~~l~~~~~~~~~~~~~~~~~~~~~T~g~~~~~----~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ii~v~D~ 89 (192)
|||++++++ . +.+...+.||+|.++.. +++..+.+++||+||++++...+..+++.+|++++|||+
T Consensus 18 KTsli~~~~----~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~ 87 (170)
T cd04116 18 KSSLMNRYV----T------NKFDTQLFHTIGVEFLNKDLEVDGHFVTLQIWDTAGQERFRSLRTPFYRGSDCCLLTFAV 87 (170)
T ss_pred HHHHHHHHH----c------CCCCcCcCCceeeEEEEEEEEECCeEEEEEEEeCCChHHHHHhHHHHhcCCCEEEEEEEC
Confidence 666666664 3 55666678898887542 344567899999999999999999999999999999999
Q ss_pred CCcccHHHHHHHHHHHHhCCC---CCCCcEEEEEeCCCCCC-CCCHHHHHhHcCccccCCc-ceEEEEeeecCCCCHHHH
Q 029517 90 ACPSRFEDSKTALEKVLRNED---LQGAPLLILANKQDLPD-AVSADELARYLDLKKLDER-VCMFEAVSGYDGFGIKES 164 (192)
Q Consensus 90 ~~~~s~~~~~~~~~~i~~~~~---~~~~piiiv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~-~~~~~~~Sa~~~~gi~e~ 164 (192)
+++++++.+..|...+..... ..++|+++++||+|+.. .+..+++.+++. .. ..+++++||++|.|+.++
T Consensus 88 ~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~e~Sa~~~~~v~~~ 162 (170)
T cd04116 88 DDSQSFQNLSNWKKEFIYYADVKEPESFPFVVLGNKNDIPERQVSTEEAQAWCR-----ENGDYPYFETSAKDATNVAAA 162 (170)
T ss_pred CCHHHHHhHHHHHHHHHHhcccccCCCCcEEEEEECccccccccCHHHHHHHHH-----HCCCCeEEEEECCCCCCHHHH
Confidence 999999999999988876432 24689999999999965 566777777775 23 358999999999999999
Q ss_pred HHHHHHH
Q 029517 165 VEWLVEV 171 (192)
Q Consensus 165 ~~~i~~~ 171 (192)
|+++.+.
T Consensus 163 ~~~~~~~ 169 (170)
T cd04116 163 FEEAVRR 169 (170)
T ss_pred HHHHHhh
Confidence 9999875
No 83
>cd04132 Rho4_like Rho4-like subfamily. Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=99.92 E-value=1.5e-23 Score=154.08 Aligned_cols=149 Identities=17% Similarity=0.240 Sum_probs=118.1
Q ss_pred ccccHHHHHHHHhhhhccCCCCCCCCCCCCcceEEEE-EE---ecCEEEEEEeCCCCcccHHHHHHhhhcCCEEEEEEeC
Q 029517 14 TKTEFHTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGR-IE---VSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDA 89 (192)
Q Consensus 14 kst~~~~l~~~~~~~~~~~~~~~~~~~~~T~g~~~~~-~~---~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ii~v~D~ 89 (192)
|||++++|++ +.+...+.||++.++.. +. ...+.+.+|||||+++|...+..+++++|++++|||+
T Consensus 13 KTsli~~l~~----------~~~~~~~~~t~~~~~~~~i~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~ii~v~d~ 82 (187)
T cd04132 13 KTCLLIVYSQ----------GKFPEEYVPTVFENYVTNIQGPNGKIIELALWDTAGQEEYDRLRPLSYPDVDVLLICYAV 82 (187)
T ss_pred HHHHHHHHHh----------CcCCCCCCCeeeeeeEEEEEecCCcEEEEEEEECCCchhHHHHHHHhCCCCCEEEEEEEC
Confidence 6777776653 45566788898877653 22 2357899999999999999999999999999999999
Q ss_pred CCcccHHHHH-HHHHHHHhCCCCCCCcEEEEEeCCCCCCC------CCHHHHHhHcCccccCCcce-EEEEeeecCCCCH
Q 029517 90 ACPSRFEDSK-TALEKVLRNEDLQGAPLLILANKQDLPDA------VSADELARYLDLKKLDERVC-MFEAVSGYDGFGI 161 (192)
Q Consensus 90 ~~~~s~~~~~-~~~~~i~~~~~~~~~piiiv~nK~Dl~~~------~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~gi 161 (192)
++..+|+.+. .|+..+.... .+.|+++|+||.|+... +..++..+++. ..+. +++++||++|.||
T Consensus 83 ~~~~s~~~~~~~~~~~~~~~~--~~~piilv~nK~Dl~~~~~~~~~v~~~~~~~~~~-----~~~~~~~~e~Sa~~~~~v 155 (187)
T cd04132 83 DNPTSLDNVEDKWFPEVNHFC--PGTPIMLVGLKTDLRKDKNLDRKVTPAQAESVAK-----KQGAFAYLECSAKTMENV 155 (187)
T ss_pred CCHHHHHHHHHHHHHHHHHhC--CCCCEEEEEeChhhhhCccccCCcCHHHHHHHHH-----HcCCcEEEEccCCCCCCH
Confidence 9999999986 4777766543 57899999999998652 34566666665 3344 8999999999999
Q ss_pred HHHHHHHHHHHHhcchhh
Q 029517 162 KESVEWLVEVMERSKRTE 179 (192)
Q Consensus 162 ~e~~~~i~~~i~~~~~~~ 179 (192)
+++|+++.+.+.......
T Consensus 156 ~~~f~~l~~~~~~~~~~~ 173 (187)
T cd04132 156 EEVFDTAIEEALKKEGKA 173 (187)
T ss_pred HHHHHHHHHHHHhhhhhh
Confidence 999999999888766443
No 84
>PLN03108 Rab family protein; Provisional
Probab=99.92 E-value=2.3e-23 Score=156.00 Aligned_cols=148 Identities=22% Similarity=0.315 Sum_probs=119.6
Q ss_pred ccccHHHHHHHHhhhhccCCCCCCCCCCCCcceEEEE----EEecCEEEEEEeCCCCcccHHHHHHhhhcCCEEEEEEeC
Q 029517 14 TKTEFHTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGR----IEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDA 89 (192)
Q Consensus 14 kst~~~~l~~~~~~~~~~~~~~~~~~~~~T~g~~~~~----~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ii~v~D~ 89 (192)
|||++++| .. +.+...+.||++.++.. +....+.+.+|||+|++.+...+..+++.+|++++|||+
T Consensus 19 KStLi~~l----~~------~~~~~~~~~ti~~~~~~~~i~~~~~~i~l~l~Dt~G~~~~~~~~~~~~~~ad~~vlv~D~ 88 (210)
T PLN03108 19 KSCLLLQF----TD------KRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDI 88 (210)
T ss_pred HHHHHHHH----Hh------CCCCCCCCCCccceEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhccCCEEEEEEEC
Confidence 56666555 43 34455677888877642 334457899999999999999999999999999999999
Q ss_pred CCcccHHHHHHHHHHHHhCCCCCCCcEEEEEeCCCCCC--CCCHHHHHhHcCccccCCcceEEEEeeecCCCCHHHHHHH
Q 029517 90 ACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPD--AVSADELARYLDLKKLDERVCMFEAVSGYDGFGIKESVEW 167 (192)
Q Consensus 90 ~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~e~~~~ 167 (192)
+++++++.+..|+..+..... .+.|+++++||+|+.. .++.++..++++ ..+++++++||+++.||+++|++
T Consensus 89 ~~~~s~~~l~~~~~~~~~~~~-~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~e~Sa~~~~~v~e~f~~ 162 (210)
T PLN03108 89 TRRETFNHLASWLEDARQHAN-ANMTIMLIGNKCDLAHRRAVSTEEGEQFAK-----EHGLIFMEASAKTAQNVEEAFIK 162 (210)
T ss_pred CcHHHHHHHHHHHHHHHHhcC-CCCcEEEEEECccCccccCCCHHHHHHHHH-----HcCCEEEEEeCCCCCCHHHHHHH
Confidence 999999999999888765532 5789999999999975 566777777776 45678999999999999999999
Q ss_pred HHHHHHhcch
Q 029517 168 LVEVMERSKR 177 (192)
Q Consensus 168 i~~~i~~~~~ 177 (192)
+++.+.+..+
T Consensus 163 l~~~~~~~~~ 172 (210)
T PLN03108 163 TAAKIYKKIQ 172 (210)
T ss_pred HHHHHHHHhh
Confidence 9998876543
No 85
>KOG0073 consensus GTP-binding ADP-ribosylation factor-like protein ARL2 [Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton]
Probab=99.91 E-value=3.5e-23 Score=143.65 Aligned_cols=148 Identities=38% Similarity=0.691 Sum_probs=133.0
Q ss_pred HHHHHHhhhhccCCCCCCCCCCCCcceEEEEEEecCEEEEEEeCCCCcccHHHHHHhhhcCCEEEEEEeCCCcccHHHHH
Q 029517 20 TLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSK 99 (192)
Q Consensus 20 ~l~~~~~~~~~~~~~~~~~~~~~T~g~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ii~v~D~~~~~s~~~~~ 99 (192)
++++++. +...+...||.|.++.++..+.+++++||++|+...++.|..|+..+|++|+|+|+++..++++..
T Consensus 31 ti~~kl~-------~~~~~~i~pt~gf~Iktl~~~~~~L~iwDvGGq~~lr~~W~nYfestdglIwvvDssD~~r~~e~~ 103 (185)
T KOG0073|consen 31 TIVKKLL-------GEDTDTISPTLGFQIKTLEYKGYTLNIWDVGGQKTLRSYWKNYFESTDGLIWVVDSSDRMRMQECK 103 (185)
T ss_pred hHHHHhc-------CCCccccCCccceeeEEEEecceEEEEEEcCCcchhHHHHHHhhhccCeEEEEEECchHHHHHHHH
Confidence 5555555 456788899999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhCCCCCCCcEEEEEeCCCCCCCCCHHHHHhHcCcccc-CCcceEEEEeeecCCCCHHHHHHHHHHHHHh
Q 029517 100 TALEKVLRNEDLQGAPLLILANKQDLPDAVSADELARYLDLKKL-DERVCMFEAVSGYDGFGIKESVEWLVEVMER 174 (192)
Q Consensus 100 ~~~~~i~~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~-~~~~~~~~~~Sa~~~~gi~e~~~~i~~~i~~ 174 (192)
..+..++......+.|+++++||.|+..+...+++...+.+..+ ..+.++.+.|||.+|+++.+.++|+++.+..
T Consensus 104 ~~L~~lL~eerlaG~~~Lvlank~dl~~~l~~~~i~~~~~L~~l~ks~~~~l~~cs~~tge~l~~gidWL~~~l~~ 179 (185)
T KOG0073|consen 104 QELTELLVEERLAGAPLLVLANKQDLPGALSLEEISKALDLEELAKSHHWRLVKCSAVTGEDLLEGIDWLCDDLMS 179 (185)
T ss_pred HHHHHHHhhhhhcCCceEEEEecCcCccccCHHHHHHhhCHHHhccccCceEEEEeccccccHHHHHHHHHHHHHH
Confidence 98888887655578999999999999988888888877776665 6789999999999999999999999998765
No 86
>cd00879 Sar1 Sar1 subfamily. Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.
Probab=99.91 E-value=4.5e-23 Score=151.91 Aligned_cols=134 Identities=37% Similarity=0.600 Sum_probs=113.9
Q ss_pred CCCCCCcceEEEEEEecCEEEEEEeCCCCcccHHHHHHhhhcCCEEEEEEeCCCcccHHHHHHHHHHHHhCCCCCCCcEE
Q 029517 38 DRIVPTVGLNIGRIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLL 117 (192)
Q Consensus 38 ~~~~~T~g~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ii~v~D~~~~~s~~~~~~~~~~i~~~~~~~~~pii 117 (192)
..+.||.+.....+...++.+.+||+||++.+...+..+++.++++++|+|+++.++++....++..+.+.....+.|++
T Consensus 45 ~~~~~T~~~~~~~i~~~~~~~~l~D~~G~~~~~~~~~~~~~~ad~iilV~D~~~~~s~~~~~~~~~~i~~~~~~~~~pvi 124 (190)
T cd00879 45 AQHVPTLHPTSEELTIGNIKFKTFDLGGHEQARRLWKDYFPEVDGIVFLVDAADPERFQESKEELDSLLSDEELANVPFL 124 (190)
T ss_pred cccCCccCcceEEEEECCEEEEEEECCCCHHHHHHHHHHhccCCEEEEEEECCcHHHHHHHHHHHHHHHcCccccCCCEE
Confidence 35678888877778878899999999999999889999999999999999999999999888999888875544679999
Q ss_pred EEEeCCCCCCCCCHHHHHhHcCcccc-----------CCcceEEEEeeecCCCCHHHHHHHHHHH
Q 029517 118 ILANKQDLPDAVSADELARYLDLKKL-----------DERVCMFEAVSGYDGFGIKESVEWLVEV 171 (192)
Q Consensus 118 iv~nK~Dl~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~Sa~~~~gi~e~~~~i~~~ 171 (192)
+++||+|+...+..+++.+.++.... ......+++|||++|+|++|+|+||.+.
T Consensus 125 vv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~e~~~~l~~~ 189 (190)
T cd00879 125 ILGNKIDLPGAVSEEELRQALGLYGTTTGKGVSLKVSGIRPIEVFMCSVVKRQGYGEAFRWLSQY 189 (190)
T ss_pred EEEeCCCCCCCcCHHHHHHHhCcccccccccccccccCceeEEEEEeEecCCCChHHHHHHHHhh
Confidence 99999999888888888888864221 1134679999999999999999999764
No 87
>cd04140 ARHI_like ARHI subfamily. ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to
Probab=99.91 E-value=1.7e-23 Score=150.84 Aligned_cols=142 Identities=18% Similarity=0.257 Sum_probs=111.8
Q ss_pred ccccHHHHHHHHhhhhccCCCCCCCCCCCCcceEEEE---EEecCEEEEEEeCCCCcccHHHHHHhhhcCCEEEEEEeCC
Q 029517 14 TKTEFHTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGR---IEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAA 90 (192)
Q Consensus 14 kst~~~~l~~~~~~~~~~~~~~~~~~~~~T~g~~~~~---~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ii~v~D~~ 90 (192)
|||++++++ . +.+...+.||++..+.. .....+.+.+|||||+++|..++..+++.++++++|||++
T Consensus 14 KTsli~~~~----~------~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~d~~ 83 (165)
T cd04140 14 KSSLVLRFV----K------GTFRESYIPTIEDTYRQVISCSKNICTLQITDTTGSHQFPAMQRLSISKGHAFILVYSVT 83 (165)
T ss_pred HHHHHHHHH----h------CCCCCCcCCcchheEEEEEEECCEEEEEEEEECCCCCcchHHHHHHhhcCCEEEEEEECC
Confidence 667766654 3 44566778888765543 2334578999999999999999999999999999999999
Q ss_pred CcccHHHHHHHHHHHHhCCC--CCCCcEEEEEeCCCCCC--CCCHHHHHhHcCccccCCcceEEEEeeecCCCCHHHHHH
Q 029517 91 CPSRFEDSKTALEKVLRNED--LQGAPLLILANKQDLPD--AVSADELARYLDLKKLDERVCMFEAVSGYDGFGIKESVE 166 (192)
Q Consensus 91 ~~~s~~~~~~~~~~i~~~~~--~~~~piiiv~nK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~e~~~ 166 (192)
+.++++.+..|+..+.+... ..++|+++|+||+|+.. .+..++...++. ..+.+++++||++|.||+++|+
T Consensus 84 ~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~-----~~~~~~~e~SA~~g~~v~~~f~ 158 (165)
T cd04140 84 SKQSLEELKPIYELICEIKGNNIEKIPIMLVGNKCDESHKREVSSNEGAACAT-----EWNCAFMETSAKTNHNVQELFQ 158 (165)
T ss_pred CHHHHHHHHHHHHHHHHHhcCCCCCCCEEEEEECccccccCeecHHHHHHHHH-----HhCCcEEEeecCCCCCHHHHHH
Confidence 99999999999877765321 25789999999999965 444555555554 3457899999999999999999
Q ss_pred HHHH
Q 029517 167 WLVE 170 (192)
Q Consensus 167 ~i~~ 170 (192)
+|.+
T Consensus 159 ~l~~ 162 (165)
T cd04140 159 ELLN 162 (165)
T ss_pred HHHh
Confidence 9975
No 88
>cd01866 Rab2 Rab2 subfamily. Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur
Probab=99.91 E-value=3.3e-23 Score=149.88 Aligned_cols=145 Identities=22% Similarity=0.301 Sum_probs=116.9
Q ss_pred ccccHHHHHHHHhhhhccCCCCCCCCCCCCcceEEEE----EEecCEEEEEEeCCCCcccHHHHHHhhhcCCEEEEEEeC
Q 029517 14 TKTEFHTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGR----IEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDA 89 (192)
Q Consensus 14 kst~~~~l~~~~~~~~~~~~~~~~~~~~~T~g~~~~~----~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ii~v~D~ 89 (192)
|||++++++ . +.+...+.||.|.++.. +++..+.+.+||+||++++......+++.+|++++|+|+
T Consensus 17 KSsLl~~l~----~------~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~il~v~d~ 86 (168)
T cd01866 17 KSCLLLQFT----D------KRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDI 86 (168)
T ss_pred HHHHHHHHH----c------CCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhccCCEEEEEEEC
Confidence 566666554 3 44555667788876642 333457899999999999999999999999999999999
Q ss_pred CCcccHHHHHHHHHHHHhCCCCCCCcEEEEEeCCCCCC--CCCHHHHHhHcCccccCCcceEEEEeeecCCCCHHHHHHH
Q 029517 90 ACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPD--AVSADELARYLDLKKLDERVCMFEAVSGYDGFGIKESVEW 167 (192)
Q Consensus 90 ~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~e~~~~ 167 (192)
+++.+++.+..|+..+.+... +++|+++|+||+|+.+ ....+++.+++. ..+..++++||+++.|++++|.+
T Consensus 87 ~~~~s~~~~~~~~~~~~~~~~-~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~e~Sa~~~~~i~~~~~~ 160 (168)
T cd01866 87 TRRETFNHLTSWLEDARQHSN-SNMTIMLIGNKCDLESRREVSYEEGEAFAK-----EHGLIFMETSAKTASNVEEAFIN 160 (168)
T ss_pred CCHHHHHHHHHHHHHHHHhCC-CCCcEEEEEECcccccccCCCHHHHHHHHH-----HcCCEEEEEeCCCCCCHHHHHHH
Confidence 999999999999998877532 5799999999999974 456667766665 44678999999999999999999
Q ss_pred HHHHHHh
Q 029517 168 LVEVMER 174 (192)
Q Consensus 168 i~~~i~~ 174 (192)
+.+.+.+
T Consensus 161 ~~~~~~~ 167 (168)
T cd01866 161 TAKEIYE 167 (168)
T ss_pred HHHHHHh
Confidence 9987754
No 89
>KOG0088 consensus GTPase Rab21, small G protein superfamily [General function prediction only]
Probab=99.91 E-value=1.3e-25 Score=154.96 Aligned_cols=128 Identities=24% Similarity=0.344 Sum_probs=110.3
Q ss_pred ecCEEEEEEeCCCCcccHHHHHHhhhcCCEEEEEEeCCCcccHHHHHHHHHHHHhCCCCCCCcEEEEEeCCCCCC--CCC
Q 029517 53 VSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPD--AVS 130 (192)
Q Consensus 53 ~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ii~v~D~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~--~~~ 130 (192)
.....+.||||+|+++|..+-+-|+++++++++|||++|.+||+.++.|+..+..... ..+-+++|+||+||.+ +++
T Consensus 59 d~ra~L~IWDTAGQErfHALGPIYYRgSnGalLVyDITDrdSFqKVKnWV~Elr~mlG-nei~l~IVGNKiDLEeeR~Vt 137 (218)
T KOG0088|consen 59 DCRADLHIWDTAGQERFHALGPIYYRGSNGALLVYDITDRDSFQKVKNWVLELRTMLG-NEIELLIVGNKIDLEEERQVT 137 (218)
T ss_pred cceeeeeeeeccchHhhhccCceEEeCCCceEEEEeccchHHHHHHHHHHHHHHHHhC-CeeEEEEecCcccHHHhhhhh
Confidence 3467899999999999999999999999999999999999999999999999988643 4688999999999977 788
Q ss_pred HHHHHhHcCccccCCcceEEEEeeecCCCCHHHHHHHHHHHHHh-cchhhhhhhhcc
Q 029517 131 ADELARYLDLKKLDERVCMFEAVSGYDGFGIKESVEWLVEVMER-SKRTEMLRARAG 186 (192)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~e~~~~i~~~i~~-~~~~~~~~~~~~ 186 (192)
..++..++. ..+..++++||+.+.||.|+|+.+.....+ ..++++.+++-+
T Consensus 138 ~qeAe~YAe-----svGA~y~eTSAk~N~Gi~elFe~Lt~~MiE~~s~~qr~~~~~s 189 (218)
T KOG0088|consen 138 RQEAEAYAE-----SVGALYMETSAKDNVGISELFESLTAKMIEHSSQRQRTRSPLS 189 (218)
T ss_pred HHHHHHHHH-----hhchhheecccccccCHHHHHHHHHHHHHHHhhhcccccCCcC
Confidence 889999998 778899999999999999999999875544 445555554433
No 90
>cd01868 Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP
Probab=99.91 E-value=3.3e-23 Score=149.13 Aligned_cols=143 Identities=22% Similarity=0.363 Sum_probs=115.1
Q ss_pred ccccHHHHHHHHhhhhccCCCCCCCCCCCCcceEEEE--EEe--cCEEEEEEeCCCCcccHHHHHHhhhcCCEEEEEEeC
Q 029517 14 TKTEFHTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGR--IEV--SNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDA 89 (192)
Q Consensus 14 kst~~~~l~~~~~~~~~~~~~~~~~~~~~T~g~~~~~--~~~--~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ii~v~D~ 89 (192)
|||++++|++ +.+...+.||+|.++.. +.. ..+.+++||+||++++...+..+++.++++|+|+|+
T Consensus 16 KSsli~~l~~----------~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~ 85 (165)
T cd01868 16 KSNLLSRFTR----------NEFNLDSKSTIGVEFATRSIQIDGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDI 85 (165)
T ss_pred HHHHHHHHhc----------CCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCChHHHHHHHHHHHCCCCEEEEEEEC
Confidence 6666666643 34455668888877653 332 346899999999999999999999999999999999
Q ss_pred CCcccHHHHHHHHHHHHhCCCCCCCcEEEEEeCCCCCC--CCCHHHHHhHcCccccCCcceEEEEeeecCCCCHHHHHHH
Q 029517 90 ACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPD--AVSADELARYLDLKKLDERVCMFEAVSGYDGFGIKESVEW 167 (192)
Q Consensus 90 ~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~e~~~~ 167 (192)
+++.+++.+..|+..+.+... .+.|+++|+||+|+.. ....++..+++. ..+.+++++||++|.|++++|++
T Consensus 86 ~~~~s~~~~~~~~~~~~~~~~-~~~pi~vv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~~v~~l~~~ 159 (165)
T cd01868 86 TKKQTFENVERWLKELRDHAD-SNIVIMLVGNKSDLRHLRAVPTEEAKAFAE-----KNGLSFIETSALDGTNVEEAFKQ 159 (165)
T ss_pred cCHHHHHHHHHHHHHHHHhCC-CCCeEEEEEECccccccccCCHHHHHHHHH-----HcCCEEEEEECCCCCCHHHHHHH
Confidence 999999999999998877642 3689999999999865 445566666665 34678999999999999999999
Q ss_pred HHHHH
Q 029517 168 LVEVM 172 (192)
Q Consensus 168 i~~~i 172 (192)
+.+.+
T Consensus 160 l~~~i 164 (165)
T cd01868 160 LLTEI 164 (165)
T ss_pred HHHHh
Confidence 98764
No 91
>cd04118 Rab24 Rab24 subfamily. Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilita
Probab=99.91 E-value=2.2e-23 Score=154.00 Aligned_cols=146 Identities=18% Similarity=0.215 Sum_probs=114.5
Q ss_pred ccccHHHHHHHHhhhhccCCCCCC-CCCCCCcceEEEE--E--EecCEEEEEEeCCCCcccHHHHHHhhhcCCEEEEEEe
Q 029517 14 TKTEFHTLLEKLKSVYSNVEGLPP-DRIVPTVGLNIGR--I--EVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVID 88 (192)
Q Consensus 14 kst~~~~l~~~~~~~~~~~~~~~~-~~~~~T~g~~~~~--~--~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ii~v~D 88 (192)
|||++++|++ +.+. ..|.||+|..+.. + .+..+.+.+||++|++++...+..+++++|++++|||
T Consensus 13 KSsLi~~~~~----------~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~iilv~d 82 (193)
T cd04118 13 KTSLVERYVH----------HRFLVGPYQNTIGAAFVAKRMVVGERVVTLGIWDTAGSERYEAMSRIYYRGAKAAIVCYD 82 (193)
T ss_pred HHHHHHHHHh----------CCcCCcCcccceeeEEEEEEEEECCEEEEEEEEECCCchhhhhhhHhhcCCCCEEEEEEE
Confidence 6666666643 3343 3678899876642 3 3345788999999999999999999999999999999
Q ss_pred CCCcccHHHHHHHHHHHHhCCCCCCCcEEEEEeCCCCCC------CCCHHHHHhHcCccccCCcceEEEEeeecCCCCHH
Q 029517 89 AACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPD------AVSADELARYLDLKKLDERVCMFEAVSGYDGFGIK 162 (192)
Q Consensus 89 ~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~------~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~ 162 (192)
++++.+++.+..|+..+.... .+.|+++|+||+|+.. .+..+++.++.. ..+.+++++||++|.|++
T Consensus 83 ~~~~~s~~~~~~~~~~i~~~~--~~~piilv~nK~Dl~~~~~~~~~v~~~~~~~~~~-----~~~~~~~~~Sa~~~~gv~ 155 (193)
T cd04118 83 LTDSSSFERAKFWVKELQNLE--EHCKIYLCGTKSDLIEQDRSLRQVDFHDVQDFAD-----EIKAQHFETSSKTGQNVD 155 (193)
T ss_pred CCCHHHHHHHHHHHHHHHhcC--CCCCEEEEEEcccccccccccCccCHHHHHHHHH-----HcCCeEEEEeCCCCCCHH
Confidence 999999999999999887653 4789999999999853 223344555543 345789999999999999
Q ss_pred HHHHHHHHHHHhcc
Q 029517 163 ESVEWLVEVMERSK 176 (192)
Q Consensus 163 e~~~~i~~~i~~~~ 176 (192)
++|+++.+.+.+..
T Consensus 156 ~l~~~i~~~~~~~~ 169 (193)
T cd04118 156 ELFQKVAEDFVSRA 169 (193)
T ss_pred HHHHHHHHHHHHhc
Confidence 99999999886543
No 92
>cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine
Probab=99.91 E-value=3e-23 Score=150.36 Aligned_cols=144 Identities=24% Similarity=0.370 Sum_probs=116.0
Q ss_pred ccccHHHHHHHHhhhhccCCCCCCCCCCCCcceEEEE--E--EecCEEEEEEeCCCCcccH-HHHHHhhhcCCEEEEEEe
Q 029517 14 TKTEFHTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGR--I--EVSNSKLVFWDLGGQPGLR-SIWEKYYEEAHAVVFVID 88 (192)
Q Consensus 14 kst~~~~l~~~~~~~~~~~~~~~~~~~~~T~g~~~~~--~--~~~~~~~~i~D~~G~~~~~-~~~~~~~~~~d~ii~v~D 88 (192)
|||++++++ . +.+...+.||++.++.. + .+..+.+.+||++|+++++ ..+..+++++|++++|||
T Consensus 15 KTsli~~~~----~------~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~d~~i~v~d 84 (170)
T cd04115 15 KTCLTYRFC----A------GRFPERTEATIGVDFRERTVEIDGERIKVQLWDTAGQERFRKSMVQHYYRNVHAVVFVYD 84 (170)
T ss_pred HHHHHHHHH----h------CCCCCccccceeEEEEEEEEEECCeEEEEEEEeCCChHHHHHhhHHHhhcCCCEEEEEEE
Confidence 566666654 3 45666778999877653 3 3345789999999999887 468888999999999999
Q ss_pred CCCcccHHHHHHHHHHHHhCCCCCCCcEEEEEeCCCCCC--CCCHHHHHhHcCccccCCcceEEEEeeecC---CCCHHH
Q 029517 89 AACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPD--AVSADELARYLDLKKLDERVCMFEAVSGYD---GFGIKE 163 (192)
Q Consensus 89 ~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~---~~gi~e 163 (192)
++++.+++.+..|+..+.......++|+++|+||+|+.+ .+..++..++.+ ...++++++||++ +.||++
T Consensus 85 ~~~~~s~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~e~Sa~~~~~~~~i~~ 159 (170)
T cd04115 85 VTNMASFHSLPSWIEECEQHSLPNEVPRILVGNKCDLREQIQVPTDLAQRFAD-----AHSMPLFETSAKDPSENDHVEA 159 (170)
T ss_pred CCCHHHHHhHHHHHHHHHHhcCCCCCCEEEEEECccchhhcCCCHHHHHHHHH-----HcCCcEEEEeccCCcCCCCHHH
Confidence 999999999999999888765446799999999999865 445566666665 4458899999999 999999
Q ss_pred HHHHHHHHH
Q 029517 164 SVEWLVEVM 172 (192)
Q Consensus 164 ~~~~i~~~i 172 (192)
+|.++++.+
T Consensus 160 ~f~~l~~~~ 168 (170)
T cd04115 160 IFMTLAHKL 168 (170)
T ss_pred HHHHHHHHh
Confidence 999998866
No 93
>KOG0081 consensus GTPase Rab27, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.91 E-value=4.1e-24 Score=147.72 Aligned_cols=141 Identities=21% Similarity=0.382 Sum_probs=122.1
Q ss_pred cCCCCCCCCCCCCcceEEEE----EE---------ecCEEEEEEeCCCCcccHHHHHHhhhcCCEEEEEEeCCCcccHHH
Q 029517 31 NVEGLPPDRIVPTVGLNIGR----IE---------VSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFED 97 (192)
Q Consensus 31 ~~~~~~~~~~~~T~g~~~~~----~~---------~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ii~v~D~~~~~s~~~ 97 (192)
.+.+.|......|+|+++.+ ++ +..+++++|||+|+++|+++...+++.+=++++++|++++.||-+
T Consensus 29 YTD~~F~~qFIsTVGIDFreKrvvY~s~gp~g~gr~~rihLQlWDTAGQERFRSLTTAFfRDAMGFlLiFDlT~eqSFLn 108 (219)
T KOG0081|consen 29 YTDGKFNTQFISTVGIDFREKRVVYNSSGPGGGGRGQRIHLQLWDTAGQERFRSLTTAFFRDAMGFLLIFDLTSEQSFLN 108 (219)
T ss_pred ecCCcccceeEEEeecccccceEEEeccCCCCCCcceEEEEeeeccccHHHHHHHHHHHHHhhccceEEEeccchHHHHH
Confidence 34588899999999999874 11 235899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhCCCCCCCcEEEEEeCCCCCC--CCCHHHHHhHcCccccCCcceEEEEeeecCCCCHHHHHHHHHHHHHhc
Q 029517 98 SKTALEKVLRNEDLQGAPLLILANKQDLPD--AVSADELARYLDLKKLDERVCMFEAVSGYDGFGIKESVEWLVEVMERS 175 (192)
Q Consensus 98 ~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~e~~~~i~~~i~~~ 175 (192)
++.|+.++....-..+..+++++||+||.+ .++.+++.+.+. ..++||||+||.+|.||++..+-+++.+-+.
T Consensus 109 vrnWlSQL~~hAYcE~PDivlcGNK~DL~~~R~Vs~~qa~~La~-----kyglPYfETSA~tg~Nv~kave~LldlvM~R 183 (219)
T KOG0081|consen 109 VRNWLSQLQTHAYCENPDIVLCGNKADLEDQRVVSEDQAAALAD-----KYGLPYFETSACTGTNVEKAVELLLDLVMKR 183 (219)
T ss_pred HHHHHHHHHHhhccCCCCEEEEcCccchhhhhhhhHHHHHHHHH-----HhCCCeeeeccccCcCHHHHHHHHHHHHHHH
Confidence 999999998754446788999999999987 677788888887 7799999999999999999999888766554
Q ss_pred c
Q 029517 176 K 176 (192)
Q Consensus 176 ~ 176 (192)
.
T Consensus 184 i 184 (219)
T KOG0081|consen 184 I 184 (219)
T ss_pred H
Confidence 3
No 94
>cd04113 Rab4 Rab4 subfamily. Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p
Probab=99.91 E-value=3e-23 Score=148.79 Aligned_cols=142 Identities=24% Similarity=0.350 Sum_probs=115.2
Q ss_pred ccccHHHHHHHHhhhhccCCCCCCCCCCCCcceEEEE----EEecCEEEEEEeCCCCcccHHHHHHhhhcCCEEEEEEeC
Q 029517 14 TKTEFHTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGR----IEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDA 89 (192)
Q Consensus 14 kst~~~~l~~~~~~~~~~~~~~~~~~~~~T~g~~~~~----~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ii~v~D~ 89 (192)
|||++++|+ + +.+...+.||.+.++.. +++..+.+++||+||++.+...+..+++++|++++|+|+
T Consensus 13 KTsli~~l~----~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~~~~i~v~d~ 82 (161)
T cd04113 13 KSCLLHRFV----E------NKFKEDSQHTIGVEFGSKIIRVGGKRVKLQIWDTAGQERFRSVTRSYYRGAAGALLVYDI 82 (161)
T ss_pred HHHHHHHHH----h------CCCCCCCCCceeeeEEEEEEEECCEEEEEEEEECcchHHHHHhHHHHhcCCCEEEEEEEC
Confidence 666666665 3 44556677888876653 333357899999999999999999999999999999999
Q ss_pred CCcccHHHHHHHHHHHHhCCCCCCCcEEEEEeCCCCCC--CCCHHHHHhHcCccccCCcceEEEEeeecCCCCHHHHHHH
Q 029517 90 ACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPD--AVSADELARYLDLKKLDERVCMFEAVSGYDGFGIKESVEW 167 (192)
Q Consensus 90 ~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~e~~~~ 167 (192)
+++.++..+..|+..+..... .+.|+++++||+|+.. .+..+++..++. ..++.++++||+++.|++++|++
T Consensus 83 ~~~~s~~~~~~~~~~~~~~~~-~~~~iivv~nK~D~~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~~i~~~~~~ 156 (161)
T cd04113 83 TNRTSFEALPTWLSDARALAS-PNIVVILVGNKSDLADQREVTFLEASRFAQ-----ENGLLFLETSALTGENVEEAFLK 156 (161)
T ss_pred CCHHHHHHHHHHHHHHHHhCC-CCCeEEEEEEchhcchhccCCHHHHHHHHH-----HcCCEEEEEECCCCCCHHHHHHH
Confidence 999999999999998765432 5789999999999965 455667776666 44589999999999999999999
Q ss_pred HHHH
Q 029517 168 LVEV 171 (192)
Q Consensus 168 i~~~ 171 (192)
+++.
T Consensus 157 ~~~~ 160 (161)
T cd04113 157 CARS 160 (161)
T ss_pred HHHh
Confidence 9875
No 95
>smart00174 RHO Rho (Ras homology) subfamily of Ras-like small GTPases. Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms.
Probab=99.91 E-value=2.2e-23 Score=151.37 Aligned_cols=143 Identities=18% Similarity=0.264 Sum_probs=112.5
Q ss_pred ccccHHHHHHHHhhhhccCCCCCCCCCCCCcceEEEE---EEecCEEEEEEeCCCCcccHHHHHHhhhcCCEEEEEEeCC
Q 029517 14 TKTEFHTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGR---IEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAA 90 (192)
Q Consensus 14 kst~~~~l~~~~~~~~~~~~~~~~~~~~~T~g~~~~~---~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ii~v~D~~ 90 (192)
|||+++++++ +.+...|.||++..+.. +++..+.+++|||||++.|...+..+++++|++|+|||++
T Consensus 11 KTsli~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~ 80 (174)
T smart00174 11 KTCLLISYTT----------NAFPEDYVPTVFENYSADVEVDGKPVELGLWDTAGQEDYDRLRPLSYPDTDVFLICFSVD 80 (174)
T ss_pred HHHHHHHHHh----------CCCCCCCCCcEEeeeeEEEEECCEEEEEEEEECCCCcccchhchhhcCCCCEEEEEEECC
Confidence 6777776653 44556677887766542 3334578999999999999999999999999999999999
Q ss_pred CcccHHHHH-HHHHHHHhCCCCCCCcEEEEEeCCCCCCC--------------CCHHHHHhHcCccccCCcc-eEEEEee
Q 029517 91 CPSRFEDSK-TALEKVLRNEDLQGAPLLILANKQDLPDA--------------VSADELARYLDLKKLDERV-CMFEAVS 154 (192)
Q Consensus 91 ~~~s~~~~~-~~~~~i~~~~~~~~~piiiv~nK~Dl~~~--------------~~~~~~~~~~~~~~~~~~~-~~~~~~S 154 (192)
++++|+.+. .|+..+.... .+.|+++|+||+|+... ++.++..++++ ..+ ..++++|
T Consensus 81 ~~~s~~~~~~~~~~~i~~~~--~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~-----~~~~~~~~e~S 153 (174)
T smart00174 81 SPASFENVKEKWYPEVKHFC--PNTPIILVGTKLDLREDKSTLRELSKQKQEPVTYEQGEALAK-----RIGAVKYLECS 153 (174)
T ss_pred CHHHHHHHHHHHHHHHHhhC--CCCCEEEEecChhhhhChhhhhhhhcccCCCccHHHHHHHHH-----HcCCcEEEEec
Confidence 999999986 5888877653 57999999999998641 44455555554 334 4899999
Q ss_pred ecCCCCHHHHHHHHHHHHH
Q 029517 155 GYDGFGIKESVEWLVEVME 173 (192)
Q Consensus 155 a~~~~gi~e~~~~i~~~i~ 173 (192)
|++|.||+++|+.+.+.+.
T Consensus 154 a~~~~~v~~lf~~l~~~~~ 172 (174)
T smart00174 154 ALTQEGVREVFEEAIRAAL 172 (174)
T ss_pred CCCCCCHHHHHHHHHHHhc
Confidence 9999999999999998764
No 96
>cd04155 Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.
Probab=99.91 E-value=4.1e-23 Score=149.79 Aligned_cols=133 Identities=38% Similarity=0.734 Sum_probs=111.9
Q ss_pred CCCCCCcceEEEEEEecCEEEEEEeCCCCcccHHHHHHhhhcCCEEEEEEeCCCcccHHHHHHHHHHHHhCCCCCCCcEE
Q 029517 38 DRIVPTVGLNIGRIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLL 117 (192)
Q Consensus 38 ~~~~~T~g~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ii~v~D~~~~~s~~~~~~~~~~i~~~~~~~~~pii 117 (192)
..+.||.|.+...+...+..+.+||+||+..+...+..+++++|++++|+|+++..++.....++..+.......++|++
T Consensus 40 ~~~~~t~g~~~~~i~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~ii~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~p~i 119 (173)
T cd04155 40 SHITPTQGFNIKTVQSDGFKLNVWDIGGQRAIRPYWRNYFENTDCLIYVIDSADKKRLEEAGAELVELLEEEKLAGVPVL 119 (173)
T ss_pred cccCCCCCcceEEEEECCEEEEEEECCCCHHHHHHHHHHhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhChhhcCCCEE
Confidence 34678899888888777899999999999999889999999999999999999988888888888877765444579999
Q ss_pred EEEeCCCCCCCCCHHHHHhHcCccccCCcceEEEEeeecCCCCHHHHHHHHHH
Q 029517 118 ILANKQDLPDAVSADELARYLDLKKLDERVCMFEAVSGYDGFGIKESVEWLVE 170 (192)
Q Consensus 118 iv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~e~~~~i~~ 170 (192)
+++||+|+.+....+++.+.+.+.......++++++||++|.|++++|+||++
T Consensus 120 vv~nK~D~~~~~~~~~i~~~l~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~~ 172 (173)
T cd04155 120 VFANKQDLATAAPAEEIAEALNLHDLRDRTWHIQACSAKTGEGLQEGMNWVCK 172 (173)
T ss_pred EEEECCCCccCCCHHHHHHHcCCcccCCCeEEEEEeECCCCCCHHHHHHHHhc
Confidence 99999999876666777777765444455667899999999999999999975
No 97
>cd01864 Rab19 Rab19 subfamily. Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.91 E-value=4e-23 Score=148.88 Aligned_cols=143 Identities=23% Similarity=0.358 Sum_probs=112.1
Q ss_pred ccccHHHHHHHHhhhhccCCCCCCCCCCCCcceEEE--EEEec--CEEEEEEeCCCCcccHHHHHHhhhcCCEEEEEEeC
Q 029517 14 TKTEFHTLLEKLKSVYSNVEGLPPDRIVPTVGLNIG--RIEVS--NSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDA 89 (192)
Q Consensus 14 kst~~~~l~~~~~~~~~~~~~~~~~~~~~T~g~~~~--~~~~~--~~~~~i~D~~G~~~~~~~~~~~~~~~d~ii~v~D~ 89 (192)
|||++++|+ . +.+...+.+|.+.++. .+... .+.+++||+||++.+...+..+++.+|++++|||+
T Consensus 16 KTsli~~l~----~------~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~llv~d~ 85 (165)
T cd01864 16 KTCVVQRFK----S------GTFSERQGNTIGVDFTMKTLEIEGKRVKLQIWDTAGQERFRTITQSYYRSANGAIIAYDI 85 (165)
T ss_pred HHHHHHHHh----h------CCCcccCCCccceEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHhccCCEEEEEEEC
Confidence 566666553 3 4456677888886554 34333 37899999999999999999999999999999999
Q ss_pred CCcccHHHHHHHHHHHHhCCCCCCCcEEEEEeCCCCCC--CCCHHHHHhHcCccccCCcceEEEEeeecCCCCHHHHHHH
Q 029517 90 ACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPD--AVSADELARYLDLKKLDERVCMFEAVSGYDGFGIKESVEW 167 (192)
Q Consensus 90 ~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~e~~~~ 167 (192)
+++.+++.+..|+..+..... .++|+++|+||+|+.. ....+++.+.+. ......++++||++|.|++++|++
T Consensus 86 ~~~~s~~~~~~~~~~i~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~----~~~~~~~~e~Sa~~~~~v~~~~~~ 160 (165)
T cd01864 86 TRRSSFESVPHWIEEVEKYGA-SNVVLLLIGNKCDLEEQREVLFEEACTLAE----KNGMLAVLETSAKESQNVEEAFLL 160 (165)
T ss_pred cCHHHHHhHHHHHHHHHHhCC-CCCcEEEEEECcccccccccCHHHHHHHHH----HcCCcEEEEEECCCCCCHHHHHHH
Confidence 999999999999999876532 5789999999999865 344455555554 122357899999999999999999
Q ss_pred HHHH
Q 029517 168 LVEV 171 (192)
Q Consensus 168 i~~~ 171 (192)
+.+.
T Consensus 161 l~~~ 164 (165)
T cd01864 161 MATE 164 (165)
T ss_pred HHHh
Confidence 9875
No 98
>cd04103 Centaurin_gamma Centaurin gamma. The centaurins (alpha, beta, gamma, and delta) are large, multi-domain proteins that all contain an ArfGAP domain and ankyrin repeats, and in some cases, numerous additional domains. Centaurin gamma contains an additional GTPase domain near its N-terminus. The specific function of this GTPase domain has not been well characterized, but centaurin gamma 2 (CENTG2) may play a role in the development of autism. Centaurin gamma 1 is also called PIKE (phosphatidyl inositol (PI) 3-kinase enhancer) and centaurin gamma 2 is also known as AGAP (ArfGAP protein with a GTPase-like domain, ankyrin repeats and a Pleckstrin homology domain) or GGAP. Three isoforms of PIKE have been identified. PIKE-S (short) and PIKE-L (long) are brain-specific isoforms, with PIKE-S restricted to the nucleus and PIKE-L found in multiple cellular compartments. A third isoform, PIKE-A was identified in human glioblastoma brain cancers and has been found in various tissues.
Probab=99.91 E-value=4.3e-23 Score=147.98 Aligned_cols=128 Identities=14% Similarity=0.249 Sum_probs=98.6
Q ss_pred CCCCCCCCCcceEEEEEEe--cCEEEEEEeCCCCcccHHHHHHhhhcCCEEEEEEeCCCcccHHHHHHHHHHHHhCCCCC
Q 029517 35 LPPDRIVPTVGLNIGRIEV--SNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQ 112 (192)
Q Consensus 35 ~~~~~~~~T~g~~~~~~~~--~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ii~v~D~~~~~s~~~~~~~~~~i~~~~~~~ 112 (192)
.|...+.|+.+.....+.. ..+.+.+||++|++.. .+++++|++++|||+++.++|+.+..|+..+.......
T Consensus 24 ~f~~~~~~~~~~~~~~i~~~~~~~~l~i~D~~g~~~~-----~~~~~~~~~ilv~d~~~~~sf~~~~~~~~~i~~~~~~~ 98 (158)
T cd04103 24 SYVQLESPEGGRFKKEVLVDGQSHLLLIRDEGGAPDA-----QFASWVDAVIFVFSLENEASFQTVYNLYHQLSSYRNIS 98 (158)
T ss_pred CCCCCCCCCccceEEEEEECCEEEEEEEEECCCCCch-----hHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCC
Confidence 3444455655443333433 3478999999999752 46788999999999999999999999999998765446
Q ss_pred CCcEEEEEeCCCCC----CCCCHHHHHhHcCccccCCcceEEEEeeecCCCCHHHHHHHHHHH
Q 029517 113 GAPLLILANKQDLP----DAVSADELARYLDLKKLDERVCMFEAVSGYDGFGIKESVEWLVEV 171 (192)
Q Consensus 113 ~~piiiv~nK~Dl~----~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~e~~~~i~~~ 171 (192)
++|+++|+||.|+. ..++.++..++++ ...++.|++|||++|.||+++|+++.+.
T Consensus 99 ~~piilvgnK~Dl~~~~~~~v~~~~~~~~~~----~~~~~~~~e~SAk~~~~i~~~f~~~~~~ 157 (158)
T cd04103 99 EIPLILVGTQDAISESNPRVIDDARARQLCA----DMKRCSYYETCATYGLNVERVFQEAAQK 157 (158)
T ss_pred CCCEEEEeeHHHhhhcCCcccCHHHHHHHHH----HhCCCcEEEEecCCCCCHHHHHHHHHhh
Confidence 78999999999984 2456666666664 1235899999999999999999999864
No 99
>cd04177 RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu
Probab=99.91 E-value=3.4e-23 Score=149.74 Aligned_cols=146 Identities=18% Similarity=0.233 Sum_probs=114.5
Q ss_pred ccccHHHHHHHHhhhhccCCCCCCCCCCCCcceEEEE---EEecCEEEEEEeCCCCcccHHHHHHhhhcCCEEEEEEeCC
Q 029517 14 TKTEFHTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGR---IEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAA 90 (192)
Q Consensus 14 kst~~~~l~~~~~~~~~~~~~~~~~~~~~T~g~~~~~---~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ii~v~D~~ 90 (192)
|||+++++. . +.+...+.||++..+.. +....+.+++|||||+++|..++..+++.++++++|+|.+
T Consensus 14 KTsli~~~~----~------~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~vlv~~~~ 83 (168)
T cd04177 14 KSALTVQFV----Q------NVFIESYDPTIEDSYRKQVEIDGRQCDLEILDTAGTEQFTAMRELYIKSGQGFLLVYSVT 83 (168)
T ss_pred HHHHHHHHH----h------CCCCcccCCcchheEEEEEEECCEEEEEEEEeCCCcccchhhhHHHHhhCCEEEEEEECC
Confidence 666666664 3 45566678888765542 3334578999999999999999999999999999999999
Q ss_pred CcccHHHHHHHHHHHHhCCCCCCCcEEEEEeCCCCCC--CCCHHHHHhHcCccccCCcceEEEEeeecCCCCHHHHHHHH
Q 029517 91 CPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPD--AVSADELARYLDLKKLDERVCMFEAVSGYDGFGIKESVEWL 168 (192)
Q Consensus 91 ~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~e~~~~i 168 (192)
++++++.+..|...+.+.....+.|+++++||+|+.+ ....++..++.. .....+++++||++|.|++++|+++
T Consensus 84 ~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~D~~~~~~~~~~~~~~~~~----~~~~~~~~~~SA~~~~~i~~~f~~i 159 (168)
T cd04177 84 SEASLNELGELREQVLRIKDSDNVPMVLVGNKADLEDDRQVSREDGVSLSQ----QWGNVPFYETSARKRTNVDEVFIDL 159 (168)
T ss_pred CHHHHHHHHHHHHHHHHhhCCCCCCEEEEEEChhccccCccCHHHHHHHHH----HcCCceEEEeeCCCCCCHHHHHHHH
Confidence 9999999999988887654446799999999999865 344455544443 1123789999999999999999999
Q ss_pred HHHHH
Q 029517 169 VEVME 173 (192)
Q Consensus 169 ~~~i~ 173 (192)
+.++.
T Consensus 160 ~~~~~ 164 (168)
T cd04177 160 VRQII 164 (168)
T ss_pred HHHHh
Confidence 87653
No 100
>cd04159 Arl10_like Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.
Probab=99.91 E-value=2e-22 Score=143.28 Aligned_cols=147 Identities=37% Similarity=0.683 Sum_probs=119.5
Q ss_pred ccccHHHHHHHHhhhhccCCCCCCCCCCCCcceEEEEEEecCEEEEEEeCCCCcccHHHHHHhhhcCCEEEEEEeCCCcc
Q 029517 14 TKTEFHTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPS 93 (192)
Q Consensus 14 kst~~~~l~~~~~~~~~~~~~~~~~~~~~T~g~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ii~v~D~~~~~ 93 (192)
|||++|+|.+ ..+...+.||.+.++..+..+.+.+.+||+||++.+...+..+++.+|++++|+|+++..
T Consensus 12 Kssl~~~l~~----------~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~ 81 (159)
T cd04159 12 KTTLVNVIAG----------GQFSEDTIPTVGFNMRKVTKGNVTLKVWDLGGQPRFRSMWERYCRGVNAIVYVVDAADRT 81 (159)
T ss_pred HHHHHHHHcc----------CCCCcCccCCCCcceEEEEECCEEEEEEECCCCHhHHHHHHHHHhcCCEEEEEEECCCHH
Confidence 6666666643 345667789999998888777899999999999999999999999999999999999988
Q ss_pred cHHHHHHHHHHHHhCCCCCCCcEEEEEeCCCCCCCCCHHHHHhHcCccccCCcceEEEEeeecCCCCHHHHHHHHHH
Q 029517 94 RFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAVSADELARYLDLKKLDERVCMFEAVSGYDGFGIKESVEWLVE 170 (192)
Q Consensus 94 s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~e~~~~i~~ 170 (192)
++.....++..+.......++|+++|+||+|+.+....+++.+...+........+++++||++|.|+++++++|.+
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~ 158 (159)
T cd04159 82 ALEAAKNELHDLLEKPSLEGIPLLVLGNKNDLPGALSVDELIEQMNLKSITDREVSCYSISCKEKTNIDIVLDWLIK 158 (159)
T ss_pred HHHHHHHHHHHHHcChhhcCCCEEEEEeCccccCCcCHHHHHHHhCcccccCCceEEEEEEeccCCChHHHHHHHhh
Confidence 89888888888776543457899999999998775555555555543333345678999999999999999999864
No 101
>cd04143 Rhes_like Rhes_like subfamily. This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression l
Probab=99.91 E-value=8.3e-23 Score=156.21 Aligned_cols=145 Identities=18% Similarity=0.214 Sum_probs=115.5
Q ss_pred ccccHHHHHHHHhhhhccCCCCCCCCCCCCcceEEE---EEEecCEEEEEEeCCCCcccHHHHHHhhhcCCEEEEEEeCC
Q 029517 14 TKTEFHTLLEKLKSVYSNVEGLPPDRIVPTVGLNIG---RIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAA 90 (192)
Q Consensus 14 kst~~~~l~~~~~~~~~~~~~~~~~~~~~T~g~~~~---~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ii~v~D~~ 90 (192)
|||++++++ . +.+...|.||++..+. .+++..+.++||||+|++.|..++..++..+|++|+|||++
T Consensus 13 KTSLi~r~~----~------~~f~~~y~pTi~d~~~k~~~i~~~~~~l~I~Dt~G~~~~~~~~~~~~~~ad~iIlVfdv~ 82 (247)
T cd04143 13 KTAIVSRFL----G------GRFEEQYTPTIEDFHRKLYSIRGEVYQLDILDTSGNHPFPAMRRLSILTGDVFILVFSLD 82 (247)
T ss_pred HHHHHHHHH----c------CCCCCCCCCChhHhEEEEEEECCEEEEEEEEECCCChhhhHHHHHHhccCCEEEEEEeCC
Confidence 566666664 3 4556678888873222 23344588999999999999888888899999999999999
Q ss_pred CcccHHHHHHHHHHHHhCC--------CCCCCcEEEEEeCCCCCC--CCCHHHHHhHcCccccCCcceEEEEeeecCCCC
Q 029517 91 CPSRFEDSKTALEKVLRNE--------DLQGAPLLILANKQDLPD--AVSADELARYLDLKKLDERVCMFEAVSGYDGFG 160 (192)
Q Consensus 91 ~~~s~~~~~~~~~~i~~~~--------~~~~~piiiv~nK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~g 160 (192)
+.++|+.+..|+..+.... ...+.|+++|+||+|+.. .+..+++.+.+.. ..++.++++||++|.|
T Consensus 83 ~~~Sf~~i~~~~~~I~~~k~~~~~~~~~~~~~piIivgNK~Dl~~~~~v~~~ei~~~~~~----~~~~~~~evSAktg~g 158 (247)
T cd04143 83 NRESFEEVCRLREQILETKSCLKNKTKENVKIPMVICGNKADRDFPREVQRDEVEQLVGG----DENCAYFEVSAKKNSN 158 (247)
T ss_pred CHHHHHHHHHHHHHHHHhhcccccccccCCCCcEEEEEECccchhccccCHHHHHHHHHh----cCCCEEEEEeCCCCCC
Confidence 9999999999999887642 224789999999999974 5667777777651 2357899999999999
Q ss_pred HHHHHHHHHHHH
Q 029517 161 IKESVEWLVEVM 172 (192)
Q Consensus 161 i~e~~~~i~~~i 172 (192)
|+++|++|.+..
T Consensus 159 I~elf~~L~~~~ 170 (247)
T cd04143 159 LDEMFRALFSLA 170 (247)
T ss_pred HHHHHHHHHHHh
Confidence 999999999865
No 102
>KOG0083 consensus GTPase Rab26/Rab37, small G protein superfamily [General function prediction only]
Probab=99.90 E-value=2.1e-24 Score=145.10 Aligned_cols=133 Identities=26% Similarity=0.453 Sum_probs=115.9
Q ss_pred CCCCCCcceEEEE----EEecCEEEEEEeCCCCcccHHHHHHhhhcCCEEEEEEeCCCcccHHHHHHHHHHHHhCCCCCC
Q 029517 38 DRIVPTVGLNIGR----IEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQG 113 (192)
Q Consensus 38 ~~~~~T~g~~~~~----~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ii~v~D~~~~~s~~~~~~~~~~i~~~~~~~~ 113 (192)
.....|+|+++.. +...++++++|||+||++|++....|++.+|+++++||+++..||+..+.|+.+|.++.. ..
T Consensus 25 ~~fistvgid~rnkli~~~~~kvklqiwdtagqerfrsvt~ayyrda~allllydiankasfdn~~~wlsei~ey~k-~~ 103 (192)
T KOG0083|consen 25 GNFISTVGIDFRNKLIDMDDKKVKLQIWDTAGQERFRSVTHAYYRDADALLLLYDIANKASFDNCQAWLSEIHEYAK-EA 103 (192)
T ss_pred CceeeeeeeccccceeccCCcEEEEEEeeccchHHHhhhhHhhhcccceeeeeeecccchhHHHHHHHHHHHHHHHH-hh
Confidence 3557889998874 455678999999999999999999999999999999999999999999999999998743 46
Q ss_pred CcEEEEEeCCCCCC--CCCHHHHHhHcCccccCCcceEEEEeeecCCCCHHHHHHHHHHHHHhcc
Q 029517 114 APLLILANKQDLPD--AVSADELARYLDLKKLDERVCMFEAVSGYDGFGIKESVEWLVEVMERSK 176 (192)
Q Consensus 114 ~piiiv~nK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~e~~~~i~~~i~~~~ 176 (192)
..+.+++||+|+.. .+..++....++ ..+++|.++||++|.||+-.|-.|.+.+.+.+
T Consensus 104 v~l~llgnk~d~a~er~v~~ddg~kla~-----~y~ipfmetsaktg~nvd~af~~ia~~l~k~~ 163 (192)
T KOG0083|consen 104 VALMLLGNKCDLAHERAVKRDDGEKLAE-----AYGIPFMETSAKTGFNVDLAFLAIAEELKKLK 163 (192)
T ss_pred HhHhhhccccccchhhccccchHHHHHH-----HHCCCceeccccccccHhHHHHHHHHHHHHhc
Confidence 78899999999954 566677777776 67899999999999999999999999887654
No 103
>cd04101 RabL4 RabL4 (Rab-like4) subfamily. RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown.
Probab=99.90 E-value=1.4e-22 Score=145.67 Aligned_cols=131 Identities=22% Similarity=0.357 Sum_probs=107.0
Q ss_pred CCCCCCCCCcceEEEE--E--E-ecCEEEEEEeCCCCcccHHHHHHhhhcCCEEEEEEeCCCcccHHHHHHHHHHHHhCC
Q 029517 35 LPPDRIVPTVGLNIGR--I--E-VSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNE 109 (192)
Q Consensus 35 ~~~~~~~~T~g~~~~~--~--~-~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ii~v~D~~~~~s~~~~~~~~~~i~~~~ 109 (192)
.+...|.||+|.++.. + . +..+.+.+|||||++.+..++..+++.+|++++|+|++++++++.+..|+..+....
T Consensus 26 ~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~ 105 (164)
T cd04101 26 VFPKNYLMTTGCDFVVKEVPVDTDNTVELFIFDSAGQELYSDMVSNYWESPSVFILVYDVSNKASFENCSRWVNKVRTAS 105 (164)
T ss_pred CcCccCCCceEEEEEEEEEEeCCCCEEEEEEEECCCHHHHHHHHHHHhCCCCEEEEEEECcCHHHHHHHHHHHHHHHHhC
Confidence 4667889999987653 2 2 345899999999999999999999999999999999999999999999998887653
Q ss_pred CCCCCcEEEEEeCCCCCCC--CCHHHHHhHcCccccCCcceEEEEeeecCCCCHHHHHHHHHHHH
Q 029517 110 DLQGAPLLILANKQDLPDA--VSADELARYLDLKKLDERVCMFEAVSGYDGFGIKESVEWLVEVM 172 (192)
Q Consensus 110 ~~~~~piiiv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~e~~~~i~~~i 172 (192)
.+.|+++|+||+|+.+. ...++...+.. ..+++++++||++|.|++++|+++.+.+
T Consensus 106 --~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~gi~~l~~~l~~~~ 163 (164)
T cd04101 106 --KHMPGVLVGNKMDLADKAEVTDAQAQAFAQ-----ANQLKFFKTSALRGVGYEEPFESLARAF 163 (164)
T ss_pred --CCCCEEEEEECcccccccCCCHHHHHHHHH-----HcCCeEEEEeCCCCCChHHHHHHHHHHh
Confidence 46899999999999653 34334333333 3357899999999999999999998864
No 104
>cd04146 RERG_RasL11_like RERG/RasL11-like subfamily. RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tu
Probab=99.90 E-value=4.7e-23 Score=148.50 Aligned_cols=145 Identities=19% Similarity=0.219 Sum_probs=110.2
Q ss_pred ccccHHHHHHHHhhhhccCCCCCCCCCCCCcceEEE---EEEecCEEEEEEeCCCCcc-cHHHHHHhhhcCCEEEEEEeC
Q 029517 14 TKTEFHTLLEKLKSVYSNVEGLPPDRIVPTVGLNIG---RIEVSNSKLVFWDLGGQPG-LRSIWEKYYEEAHAVVFVIDA 89 (192)
Q Consensus 14 kst~~~~l~~~~~~~~~~~~~~~~~~~~~T~g~~~~---~~~~~~~~~~i~D~~G~~~-~~~~~~~~~~~~d~ii~v~D~ 89 (192)
|||+++++++ +.+...|.||.+..+. .+++..+.+++||+||++. +......+++.+|++|+|+|+
T Consensus 12 Ktsli~~~~~----------~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~d~~i~v~d~ 81 (165)
T cd04146 12 KSALVVRFLT----------KRFIGEYDPNLESLYSRQVTIDGEQVSLEILDTAGQQQADTEQLERSIRWADGFVLVYSI 81 (165)
T ss_pred HHHHHHHHHh----------CccccccCCChHHhceEEEEECCEEEEEEEEECCCCcccccchHHHHHHhCCEEEEEEEC
Confidence 6777766653 3344556676654332 2444567899999999985 344567789999999999999
Q ss_pred CCcccHHHHHHHHHHHHhCCC-CCCCcEEEEEeCCCCCC--CCCHHHHHhHcCccccCCcceEEEEeeecCCC-CHHHHH
Q 029517 90 ACPSRFEDSKTALEKVLRNED-LQGAPLLILANKQDLPD--AVSADELARYLDLKKLDERVCMFEAVSGYDGF-GIKESV 165 (192)
Q Consensus 90 ~~~~s~~~~~~~~~~i~~~~~-~~~~piiiv~nK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~-gi~e~~ 165 (192)
+++++|+.+..|+..+..... ..+.|+++|+||+|+.. .++.+++.++.+ ..+.+++++||++|. ||+++|
T Consensus 82 ~~~~s~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~-----~~~~~~~e~Sa~~~~~~v~~~f 156 (165)
T cd04146 82 TDRSSFDEISQLKQLIREIKKRDREIPVILVGNKADLLHYRQVSTEEGEKLAS-----ELGCLFFEVSAAEDYDGVHSVF 156 (165)
T ss_pred CCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCchHHhCccCHHHHHHHHH-----HcCCEEEEeCCCCCchhHHHHH
Confidence 999999999999888876532 35799999999999854 455666666665 445789999999994 999999
Q ss_pred HHHHHHHH
Q 029517 166 EWLVEVME 173 (192)
Q Consensus 166 ~~i~~~i~ 173 (192)
+++++.+.
T Consensus 157 ~~l~~~~~ 164 (165)
T cd04146 157 HELCREVR 164 (165)
T ss_pred HHHHHHHh
Confidence 99998654
No 105
>PLN03118 Rab family protein; Provisional
Probab=99.90 E-value=1.5e-22 Score=151.63 Aligned_cols=146 Identities=21% Similarity=0.326 Sum_probs=112.4
Q ss_pred ccccHHHHHHHHhhhhccCCCCCCCCCCCCcceEEE--EEE--ecCEEEEEEeCCCCcccHHHHHHhhhcCCEEEEEEeC
Q 029517 14 TKTEFHTLLEKLKSVYSNVEGLPPDRIVPTVGLNIG--RIE--VSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDA 89 (192)
Q Consensus 14 kst~~~~l~~~~~~~~~~~~~~~~~~~~~T~g~~~~--~~~--~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ii~v~D~ 89 (192)
|||++++|++. . ...+.||.|.++. .+. ...+.+.+|||||++++...+..+++.+|++|+|||+
T Consensus 27 KTsli~~l~~~----------~-~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~vlv~D~ 95 (211)
T PLN03118 27 KSSLLVSFISS----------S-VEDLAPTIGVDFKIKQLTVGGKRLKLTIWDTAGQERFRTLTSSYYRNAQGIILVYDV 95 (211)
T ss_pred HHHHHHHHHhC----------C-CCCcCCCceeEEEEEEEEECCEEEEEEEEECCCchhhHHHHHHHHhcCCEEEEEEEC
Confidence 67777776542 1 2356788887664 233 3357899999999999999999999999999999999
Q ss_pred CCcccHHHHHH-HHHHHHhCCCCCCCcEEEEEeCCCCCC--CCCHHHHHhHcCccccCCcceEEEEeeecCCCCHHHHHH
Q 029517 90 ACPSRFEDSKT-ALEKVLRNEDLQGAPLLILANKQDLPD--AVSADELARYLDLKKLDERVCMFEAVSGYDGFGIKESVE 166 (192)
Q Consensus 90 ~~~~s~~~~~~-~~~~i~~~~~~~~~piiiv~nK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~e~~~ 166 (192)
++.++|+.+.. |...+.......+.|+++|+||+|+.. .+..++..++.. ..+..++++||++|.|++++|+
T Consensus 96 ~~~~sf~~~~~~~~~~~~~~~~~~~~~~ilv~NK~Dl~~~~~i~~~~~~~~~~-----~~~~~~~e~SAk~~~~v~~l~~ 170 (211)
T PLN03118 96 TRRETFTNLSDVWGKEVELYSTNQDCVKMLVGNKVDRESERDVSREEGMALAK-----EHGCLFLECSAKTRENVEQCFE 170 (211)
T ss_pred CCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccCccCHHHHHHHHH-----HcCCEEEEEeCCCCCCHHHHHH
Confidence 99999999876 444443333335689999999999965 344555555554 4467899999999999999999
Q ss_pred HHHHHHHhc
Q 029517 167 WLVEVMERS 175 (192)
Q Consensus 167 ~i~~~i~~~ 175 (192)
+|.+.+.+.
T Consensus 171 ~l~~~~~~~ 179 (211)
T PLN03118 171 ELALKIMEV 179 (211)
T ss_pred HHHHHHHhh
Confidence 999988764
No 106
>smart00175 RAB Rab subfamily of small GTPases. Rab GTPases are implicated in vesicle trafficking.
Probab=99.90 E-value=2.5e-22 Score=144.13 Aligned_cols=145 Identities=26% Similarity=0.394 Sum_probs=116.7
Q ss_pred ccccHHHHHHHHhhhhccCCCCCCCCCCCCcceEEEE--EEe--cCEEEEEEeCCCCcccHHHHHHhhhcCCEEEEEEeC
Q 029517 14 TKTEFHTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGR--IEV--SNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDA 89 (192)
Q Consensus 14 kst~~~~l~~~~~~~~~~~~~~~~~~~~~T~g~~~~~--~~~--~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ii~v~D~ 89 (192)
|||++++|++. .+...+.+|++.++.. +.. ..+.+++||+||++++...+..+++.+|++++|+|+
T Consensus 13 KTtli~~l~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~ilv~d~ 82 (164)
T smart00175 13 KSSLLSRFTDG----------KFSEQYKSTIGVDFKTKTIEVDGKRVKLQIWDTAGQERFRSITSSYYRGAVGALLVYDI 82 (164)
T ss_pred HHHHHHHHhcC----------CCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHhCCCCEEEEEEEC
Confidence 66666666533 3455667888876543 333 347899999999999999999999999999999999
Q ss_pred CCcccHHHHHHHHHHHHhCCCCCCCcEEEEEeCCCCCC--CCCHHHHHhHcCccccCCcceEEEEeeecCCCCHHHHHHH
Q 029517 90 ACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPD--AVSADELARYLDLKKLDERVCMFEAVSGYDGFGIKESVEW 167 (192)
Q Consensus 90 ~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~e~~~~ 167 (192)
+++.+++.+..|+..+..... .++|+++++||+|+.. ....+.+.++.. ..+++++++||++|.|+++++++
T Consensus 83 ~~~~s~~~~~~~l~~~~~~~~-~~~pivvv~nK~D~~~~~~~~~~~~~~~~~-----~~~~~~~e~Sa~~~~~i~~l~~~ 156 (164)
T smart00175 83 TNRESFENLKNWLKELREYAD-PNVVIMLVGNKSDLEDQRQVSREEAEAFAE-----EHGLPFFETSAKTNTNVEEAFEE 156 (164)
T ss_pred CCHHHHHHHHHHHHHHHHhCC-CCCeEEEEEEchhcccccCCCHHHHHHHHH-----HcCCeEEEEeCCCCCCHHHHHHH
Confidence 999999999999998877643 4799999999999875 445666666654 44678999999999999999999
Q ss_pred HHHHHHh
Q 029517 168 LVEVMER 174 (192)
Q Consensus 168 i~~~i~~ 174 (192)
|.+.+.+
T Consensus 157 i~~~~~~ 163 (164)
T smart00175 157 LAREILK 163 (164)
T ss_pred HHHHHhh
Confidence 9988754
No 107
>cd01863 Rab18 Rab18 subfamily. Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos
Probab=99.90 E-value=1.9e-22 Score=144.60 Aligned_cols=143 Identities=21% Similarity=0.343 Sum_probs=115.7
Q ss_pred ccccHHHHHHHHhhhhccCCCCCCCCCCCCcceEEEE----EEecCEEEEEEeCCCCcccHHHHHHhhhcCCEEEEEEeC
Q 029517 14 TKTEFHTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGR----IEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDA 89 (192)
Q Consensus 14 kst~~~~l~~~~~~~~~~~~~~~~~~~~~T~g~~~~~----~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ii~v~D~ 89 (192)
|||++|+|++ ..+...+.||.+.++.. +....+.+.+||+||++.+...+..+++.+|++++|+|+
T Consensus 13 KSsli~~l~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~ 82 (161)
T cd01863 13 KSSLLLRFTD----------DTFDPDLAATIGVDFKVKTLTVDGKKVKLAIWDTAGQERFRTLTSSYYRGAQGVILVYDV 82 (161)
T ss_pred HHHHHHHHHc----------CCCCcccCCcccceEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHhCCCCEEEEEEEC
Confidence 6677666653 33344567888876542 223457899999999999998899999999999999999
Q ss_pred CCcccHHHHHHHHHHHHhCCCCCCCcEEEEEeCCCCCC-CCCHHHHHhHcCccccCCcceEEEEeeecCCCCHHHHHHHH
Q 029517 90 ACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPD-AVSADELARYLDLKKLDERVCMFEAVSGYDGFGIKESVEWL 168 (192)
Q Consensus 90 ~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~e~~~~i 168 (192)
+++.+++.+..|+..+.......+.|+++++||+|+.. ....++..++.. ..+++++++||++|.|++++++++
T Consensus 83 ~~~~s~~~~~~~~~~i~~~~~~~~~~~~iv~nK~D~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~gi~~~~~~~ 157 (161)
T cd01863 83 TRRDTFTNLETWLNELETYSTNNDIVKMLVGNKIDKENREVTREEGLKFAR-----KHNMLFIETSAKTRDGVQQAFEEL 157 (161)
T ss_pred CCHHHHHhHHHHHHHHHHhCCCCCCcEEEEEECCcccccccCHHHHHHHHH-----HcCCEEEEEecCCCCCHHHHHHHH
Confidence 99999999999999888765556899999999999974 455666666665 457889999999999999999998
Q ss_pred HHH
Q 029517 169 VEV 171 (192)
Q Consensus 169 ~~~ 171 (192)
.+.
T Consensus 158 ~~~ 160 (161)
T cd01863 158 VEK 160 (161)
T ss_pred HHh
Confidence 875
No 108
>cd04139 RalA_RalB RalA/RalB subfamily. The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo
Probab=99.90 E-value=1.7e-22 Score=144.91 Aligned_cols=145 Identities=20% Similarity=0.245 Sum_probs=115.6
Q ss_pred ccccHHHHHHHHhhhhccCCCCCCCCCCCCcceEEEE---EEecCEEEEEEeCCCCcccHHHHHHhhhcCCEEEEEEeCC
Q 029517 14 TKTEFHTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGR---IEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAA 90 (192)
Q Consensus 14 kst~~~~l~~~~~~~~~~~~~~~~~~~~~T~g~~~~~---~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ii~v~D~~ 90 (192)
|||++++|++ +.+...+.||++..+.. ++...+.+.+||+||++.+...+..+++.++++++|+|++
T Consensus 13 KTsl~~~l~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~ 82 (164)
T cd04139 13 KSALTLQFMY----------DEFVEDYEPTKADSYRKKVVLDGEDVQLNILDTAGQEDYAAIRDNYHRSGEGFLLVFSIT 82 (164)
T ss_pred HHHHHHHHHh----------CCCccccCCcchhhEEEEEEECCEEEEEEEEECCChhhhhHHHHHHhhcCCEEEEEEECC
Confidence 6777777763 33444566776655443 3334678999999999999999999999999999999999
Q ss_pred CcccHHHHHHHHHHHHhCCCCCCCcEEEEEeCCCCCC--CCCHHHHHhHcCccccCCcceEEEEeeecCCCCHHHHHHHH
Q 029517 91 CPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPD--AVSADELARYLDLKKLDERVCMFEAVSGYDGFGIKESVEWL 168 (192)
Q Consensus 91 ~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~e~~~~i 168 (192)
++.++..+..|+..+.......++|+++|+||+|+.+ ....++..+... ..+.+++++||++|.|++++|+++
T Consensus 83 ~~~s~~~~~~~~~~~~~~~~~~~~piiiv~NK~D~~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~gi~~l~~~l 157 (164)
T cd04139 83 DMESFTATAEFREQILRVKDDDNVPLLLVGNKCDLEDKRQVSSEEAANLAR-----QWGVPYVETSAKTRQNVEKAFYDL 157 (164)
T ss_pred CHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEccccccccccCHHHHHHHHH-----HhCCeEEEeeCCCCCCHHHHHHHH
Confidence 9999999999999998865446799999999999975 344455555554 345789999999999999999999
Q ss_pred HHHHH
Q 029517 169 VEVME 173 (192)
Q Consensus 169 ~~~i~ 173 (192)
.+.+.
T Consensus 158 ~~~~~ 162 (164)
T cd04139 158 VREIR 162 (164)
T ss_pred HHHHH
Confidence 88764
No 109
>cd04142 RRP22 RRP22 subfamily. RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated.
Probab=99.90 E-value=1.3e-22 Score=150.57 Aligned_cols=150 Identities=15% Similarity=0.179 Sum_probs=111.2
Q ss_pred ccccHHHHHHHHhhhhccCCCCCCCCCCCCcceEEE--E--EEecCEEEEEEeCCCCcccH--------HHHHHhhhcCC
Q 029517 14 TKTEFHTLLEKLKSVYSNVEGLPPDRIVPTVGLNIG--R--IEVSNSKLVFWDLGGQPGLR--------SIWEKYYEEAH 81 (192)
Q Consensus 14 kst~~~~l~~~~~~~~~~~~~~~~~~~~~T~g~~~~--~--~~~~~~~~~i~D~~G~~~~~--------~~~~~~~~~~d 81 (192)
|||++++++ . +.+...|.||++.++. . +++..+.+.+|||||.+.+. .....+++.+|
T Consensus 13 KTsLi~~~~----~------~~f~~~~~pt~~~~~~~~~i~~~~~~~~l~i~Dt~G~~~~~~~~~~e~~~~~~~~~~~ad 82 (198)
T cd04142 13 KTAIVRQFL----A------QEFPEEYIPTEHRRLYRPAVVLSGRVYDLHILDVPNMQRYPGTAGQEWMDPRFRGLRNSR 82 (198)
T ss_pred HHHHHHHHH----c------CCCCcccCCccccccceeEEEECCEEEEEEEEeCCCcccCCccchhHHHHHHHhhhccCC
Confidence 666666654 3 4556677888876543 2 33344789999999975431 11334578999
Q ss_pred EEEEEEeCCCcccHHHHHHHHHHHHhCC--CCCCCcEEEEEeCCCCCC--CCCHHHHHhHcCccccCCcceEEEEeeecC
Q 029517 82 AVVFVIDAACPSRFEDSKTALEKVLRNE--DLQGAPLLILANKQDLPD--AVSADELARYLDLKKLDERVCMFEAVSGYD 157 (192)
Q Consensus 82 ~ii~v~D~~~~~s~~~~~~~~~~i~~~~--~~~~~piiiv~nK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 157 (192)
++|+|||++++++++.+..|+..+.+.. ...++|+++|+||+|+.. .+..+++.+++. ...+++++++||++
T Consensus 83 ~iilv~D~~~~~S~~~~~~~~~~i~~~~~~~~~~~piiivgNK~Dl~~~~~~~~~~~~~~~~----~~~~~~~~e~Sak~ 158 (198)
T cd04142 83 AFILVYDICSPDSFHYVKLLRQQILETRPAGNKEPPIVVVGNKRDQQRHRFAPRHVLSVLVR----KSWKCGYLECSAKY 158 (198)
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHhcccCCCCCCEEEEEECccccccccccHHHHHHHHH----HhcCCcEEEecCCC
Confidence 9999999999999999999998887753 235799999999999965 344555554433 13367899999999
Q ss_pred CCCHHHHHHHHHHHHHhcch
Q 029517 158 GFGIKESVEWLVEVMERSKR 177 (192)
Q Consensus 158 ~~gi~e~~~~i~~~i~~~~~ 177 (192)
|.||+++|+.+.+.+....+
T Consensus 159 g~~v~~lf~~i~~~~~~~~~ 178 (198)
T cd04142 159 NWHILLLFKELLISATTRGR 178 (198)
T ss_pred CCCHHHHHHHHHHHhhccCC
Confidence 99999999999988876543
No 110
>KOG0395 consensus Ras-related GTPase [General function prediction only]
Probab=99.90 E-value=1.3e-22 Score=149.68 Aligned_cols=138 Identities=22% Similarity=0.308 Sum_probs=123.2
Q ss_pred CCCCCCCCCCcceEEEE---EEecCEEEEEEeCCCCcccHHHHHHhhhcCCEEEEEEeCCCcccHHHHHHHHHHHHhCCC
Q 029517 34 GLPPDRIVPTVGLNIGR---IEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNED 110 (192)
Q Consensus 34 ~~~~~~~~~T~g~~~~~---~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ii~v~D~~~~~s~~~~~~~~~~i~~~~~ 110 (192)
+.|.+.|.||++..+.. +++..+.+.|+||+|++.|..+...++++++++++||++++..||+.+..+...+.+...
T Consensus 26 ~~f~~~y~ptied~y~k~~~v~~~~~~l~ilDt~g~~~~~~~~~~~~~~~~gF~lVysitd~~SF~~~~~l~~~I~r~~~ 105 (196)
T KOG0395|consen 26 GRFVEDYDPTIEDSYRKELTVDGEVCMLEILDTAGQEEFSAMRDLYIRNGDGFLLVYSITDRSSFEEAKQLREQILRVKG 105 (196)
T ss_pred cccccccCCCccccceEEEEECCEEEEEEEEcCCCcccChHHHHHhhccCcEEEEEEECCCHHHHHHHHHHHHHHHHhhC
Confidence 88899999999976663 555678999999999999999999999999999999999999999999999999977666
Q ss_pred CCCCcEEEEEeCCCCCC--CCCHHHHHhHcCccccCCcceEEEEeeecCCCCHHHHHHHHHHHHHhcc
Q 029517 111 LQGAPLLILANKQDLPD--AVSADELARYLDLKKLDERVCMFEAVSGYDGFGIKESVEWLVEVMERSK 176 (192)
Q Consensus 111 ~~~~piiiv~nK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~e~~~~i~~~i~~~~ 176 (192)
...+|+++||||+|+.. .++.++..+++. ..+++|+|+||+.+.+|+++|..|.+.+...+
T Consensus 106 ~~~~PivlVGNK~Dl~~~R~V~~eeg~~la~-----~~~~~f~E~Sak~~~~v~~~F~~L~r~~~~~~ 168 (196)
T KOG0395|consen 106 RDDVPIILVGNKCDLERERQVSEEEGKALAR-----SWGCAFIETSAKLNYNVDEVFYELVREIRLPR 168 (196)
T ss_pred cCCCCEEEEEEcccchhccccCHHHHHHHHH-----hcCCcEEEeeccCCcCHHHHHHHHHHHHHhhh
Confidence 56789999999999987 788888888866 56678999999999999999999999887743
No 111
>cd01860 Rab5_related Rab5-related subfamily. This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo
Probab=99.90 E-value=4.3e-22 Score=142.95 Aligned_cols=143 Identities=24% Similarity=0.360 Sum_probs=115.3
Q ss_pred ccccHHHHHHHHhhhhccCCCCCCCCCCCCcceEEEE----EEecCEEEEEEeCCCCcccHHHHHHhhhcCCEEEEEEeC
Q 029517 14 TKTEFHTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGR----IEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDA 89 (192)
Q Consensus 14 kst~~~~l~~~~~~~~~~~~~~~~~~~~~T~g~~~~~----~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ii~v~D~ 89 (192)
|||++|+|++. .+...+.||.|..+.. ++...+.+.+||+||++++...+..+++++|++++|+|+
T Consensus 14 KSsli~~l~~~----------~~~~~~~~t~~~~~~~~~v~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~ 83 (163)
T cd01860 14 KSSLVLRFVKN----------EFSENQESTIGAAFLTQTVNLDDTTVKFEIWDTAGQERYRSLAPMYYRGAAAAIVVYDI 83 (163)
T ss_pred HHHHHHHHHcC----------CCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCchHHHHHHHHHHhccCCEEEEEEEC
Confidence 67777776543 3344567888765532 334467899999999999999999999999999999999
Q ss_pred CCcccHHHHHHHHHHHHhCCCCCCCcEEEEEeCCCCCC--CCCHHHHHhHcCccccCCcceEEEEeeecCCCCHHHHHHH
Q 029517 90 ACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPD--AVSADELARYLDLKKLDERVCMFEAVSGYDGFGIKESVEW 167 (192)
Q Consensus 90 ~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~e~~~~ 167 (192)
+++++++.+..|+..+..... ...|+++++||+|+.. ..+.++..+... ..+..++++||++|.|+.++|++
T Consensus 84 ~~~~s~~~~~~~~~~~~~~~~-~~~~iivv~nK~D~~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~~v~~l~~~ 157 (163)
T cd01860 84 TSEESFEKAKSWVKELQRNAS-PNIIIALVGNKADLESKRQVSTEEAQEYAD-----ENGLLFFETSAKTGENVNELFTE 157 (163)
T ss_pred cCHHHHHHHHHHHHHHHHhCC-CCCeEEEEEECccccccCcCCHHHHHHHHH-----HcCCEEEEEECCCCCCHHHHHHH
Confidence 999999999999999887643 5789999999999874 445566666665 44578999999999999999999
Q ss_pred HHHHH
Q 029517 168 LVEVM 172 (192)
Q Consensus 168 i~~~i 172 (192)
|.+.+
T Consensus 158 l~~~l 162 (163)
T cd01860 158 IAKKL 162 (163)
T ss_pred HHHHh
Confidence 99875
No 112
>cd01861 Rab6 Rab6 subfamily. Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate
Probab=99.90 E-value=3.2e-22 Score=143.34 Aligned_cols=143 Identities=21% Similarity=0.347 Sum_probs=113.9
Q ss_pred hccccHHHHHHHHhhhhccCCCCCCCCCCCCcceEEEE--EEe--cCEEEEEEeCCCCcccHHHHHHhhhcCCEEEEEEe
Q 029517 13 FTKTEFHTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGR--IEV--SNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVID 88 (192)
Q Consensus 13 ~kst~~~~l~~~~~~~~~~~~~~~~~~~~~T~g~~~~~--~~~--~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ii~v~D 88 (192)
=|||++|+|++. .+...+.|+.+.++.. +.. ..+++++||+||++++...+..+++.+|++++|+|
T Consensus 12 GKSsli~~l~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~~~ii~v~d 81 (161)
T cd01861 12 GKTSIITRFMYD----------TFDNQYQATIGIDFLSKTMYLEDKTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYD 81 (161)
T ss_pred CHHHHHHHHHcC----------CCCccCCCceeeeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhccCCEEEEEEE
Confidence 367777777543 3344567788776543 333 34689999999999999999999999999999999
Q ss_pred CCCcccHHHHHHHHHHHHhCCCCCCCcEEEEEeCCCCCC--CCCHHHHHhHcCccccCCcceEEEEeeecCCCCHHHHHH
Q 029517 89 AACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPD--AVSADELARYLDLKKLDERVCMFEAVSGYDGFGIKESVE 166 (192)
Q Consensus 89 ~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~e~~~ 166 (192)
++++++|+.+..|+..+..... .+.|+++++||+|+.+ ....++.....+ ..+.+++++||+++.|++++|+
T Consensus 82 ~~~~~s~~~~~~~~~~~~~~~~-~~~~iilv~nK~D~~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~~v~~l~~ 155 (161)
T cd01861 82 ITNRQSFDNTDKWIDDVRDERG-NDVIIVLVGNKTDLSDKRQVSTEEGEKKAK-----ELNAMFIETSAKAGHNVKELFR 155 (161)
T ss_pred CcCHHHHHHHHHHHHHHHHhCC-CCCEEEEEEEChhccccCccCHHHHHHHHH-----HhCCEEEEEeCCCCCCHHHHHH
Confidence 9999999999999998876532 3699999999999944 345556666655 4468899999999999999999
Q ss_pred HHHHH
Q 029517 167 WLVEV 171 (192)
Q Consensus 167 ~i~~~ 171 (192)
+|.+.
T Consensus 156 ~i~~~ 160 (161)
T cd01861 156 KIASA 160 (161)
T ss_pred HHHHh
Confidence 99874
No 113
>cd04123 Rab21 Rab21 subfamily. The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site
Probab=99.89 E-value=2.7e-22 Score=143.53 Aligned_cols=143 Identities=22% Similarity=0.277 Sum_probs=111.4
Q ss_pred ccccHHHHHHHHhhhhccCCCCCCCCCCCCcceEEE--EEE--ecCEEEEEEeCCCCcccHHHHHHhhhcCCEEEEEEeC
Q 029517 14 TKTEFHTLLEKLKSVYSNVEGLPPDRIVPTVGLNIG--RIE--VSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDA 89 (192)
Q Consensus 14 kst~~~~l~~~~~~~~~~~~~~~~~~~~~T~g~~~~--~~~--~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ii~v~D~ 89 (192)
|||++|+|++. .+...+.+|.+..+. .+. +..+.+.+||+||++.+...+..+++++|++++|+|+
T Consensus 13 KStli~~l~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~ 82 (162)
T cd04123 13 KTSLVLRYVEN----------KFNEKHESTTQASFFQKTVNIGGKRIDLAIWDTAGQERYHALGPIYYRDADGAILVYDI 82 (162)
T ss_pred HHHHHHHHHhC----------CCCCCcCCccceeEEEEEEEECCEEEEEEEEECCchHHHHHhhHHHhccCCEEEEEEEC
Confidence 77877777643 222344555544433 222 3456899999999999999999999999999999999
Q ss_pred CCcccHHHHHHHHHHHHhCCCCCCCcEEEEEeCCCCCC--CCCHHHHHhHcCccccCCcceEEEEeeecCCCCHHHHHHH
Q 029517 90 ACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPD--AVSADELARYLDLKKLDERVCMFEAVSGYDGFGIKESVEW 167 (192)
Q Consensus 90 ~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~e~~~~ 167 (192)
++.++++.+..|+..+..... .++|+++++||+|+.. ....+++.+... ..+.+++++||++|.|+++++++
T Consensus 83 ~~~~s~~~~~~~~~~i~~~~~-~~~piiiv~nK~D~~~~~~~~~~~~~~~~~-----~~~~~~~~~s~~~~~gi~~~~~~ 156 (162)
T cd04123 83 TDADSFQKVKKWIKELKQMRG-NNISLVIVGNKIDLERQRVVSKSEAEEYAK-----SVGAKHFETSAKTGKGIEELFLS 156 (162)
T ss_pred CCHHHHHHHHHHHHHHHHhCC-CCCeEEEEEECcccccccCCCHHHHHHHHH-----HcCCEEEEEeCCCCCCHHHHHHH
Confidence 999999999999988877643 3789999999999875 344555655554 44678999999999999999999
Q ss_pred HHHHH
Q 029517 168 LVEVM 172 (192)
Q Consensus 168 i~~~i 172 (192)
+.+.+
T Consensus 157 l~~~~ 161 (162)
T cd04123 157 LAKRM 161 (162)
T ss_pred HHHHh
Confidence 98765
No 114
>KOG0072 consensus GTP-binding ADP-ribosylation factor-like protein ARL1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.89 E-value=3.4e-23 Score=140.82 Aligned_cols=142 Identities=32% Similarity=0.591 Sum_probs=129.2
Q ss_pred CCCCCCCCCCcceEEEEEEecCEEEEEEeCCCCcccHHHHHHhhhcCCEEEEEEeCCCcccHHHHHHHHHHHHhCCCCCC
Q 029517 34 GLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQG 113 (192)
Q Consensus 34 ~~~~~~~~~T~g~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ii~v~D~~~~~s~~~~~~~~~~i~~~~~~~~ 113 (192)
.....+..||+|.+...+.+++.++++||.+|+-..++.|..|+.+.|++|+|+|.+|.+........+..+++.....+
T Consensus 40 vgevvttkPtigfnve~v~yKNLk~~vwdLggqtSirPyWRcYy~dt~avIyVVDssd~dris~a~~el~~mL~E~eLq~ 119 (182)
T KOG0072|consen 40 VGEVVTTKPTIGFNVETVPYKNLKFQVWDLGGQTSIRPYWRCYYADTDAVIYVVDSSDRDRISIAGVELYSMLQEEELQH 119 (182)
T ss_pred cCcccccCCCCCcCccccccccccceeeEccCcccccHHHHHHhcccceEEEEEeccchhhhhhhHHHHHHHhccHhhcC
Confidence 34456779999999999999999999999999999999999999999999999999999999888889999988777778
Q ss_pred CcEEEEEeCCCCCCCCCHHHHHhHcCccccCCcceEEEEeeecCCCCHHHHHHHHHHHHHhc
Q 029517 114 APLLILANKQDLPDAVSADELARYLDLKKLDERVCMFEAVSGYDGFGIKESVEWLVEVMERS 175 (192)
Q Consensus 114 ~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~e~~~~i~~~i~~~ 175 (192)
..+++++||.|...+....|+...+.+..++++.+.++++||.+|.|++++.+|+.+.+...
T Consensus 120 a~llv~anKqD~~~~~t~~E~~~~L~l~~Lk~r~~~Iv~tSA~kg~Gld~~~DWL~~~l~~~ 181 (182)
T KOG0072|consen 120 AKLLVFANKQDYSGALTRSEVLKMLGLQKLKDRIWQIVKTSAVKGEGLDPAMDWLQRPLKSR 181 (182)
T ss_pred ceEEEEeccccchhhhhHHHHHHHhChHHHhhheeEEEeeccccccCCcHHHHHHHHHHhcc
Confidence 89999999999998888889988888877778889999999999999999999999987653
No 115
>cd04148 RGK RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ra
Probab=99.89 E-value=6.3e-22 Score=149.27 Aligned_cols=147 Identities=20% Similarity=0.166 Sum_probs=110.3
Q ss_pred ccccHHHHHHHHhhhhccCCCCCC-CCCCCCcceEEE--E--EEecCEEEEEEeCCCCcccHHHHHHhhh-cCCEEEEEE
Q 029517 14 TKTEFHTLLEKLKSVYSNVEGLPP-DRIVPTVGLNIG--R--IEVSNSKLVFWDLGGQPGLRSIWEKYYE-EAHAVVFVI 87 (192)
Q Consensus 14 kst~~~~l~~~~~~~~~~~~~~~~-~~~~~T~g~~~~--~--~~~~~~~~~i~D~~G~~~~~~~~~~~~~-~~d~ii~v~ 87 (192)
|||++++++ . +.+. ..|.||.+.++. . +++..+.+.+||++|++. .....+++ ++|++++||
T Consensus 13 KTsLi~~~~----~------~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~i~Dt~G~~~--~~~~~~~~~~ad~iilV~ 80 (221)
T cd04148 13 KSSLASQFT----S------GEYDDHAYDASGDDDTYERTVSVDGEESTLVVIDHWEQEM--WTEDSCMQYQGDAFVVVY 80 (221)
T ss_pred HHHHHHHHh----c------CCcCccCcCCCccccceEEEEEECCEEEEEEEEeCCCcch--HHHhHHhhcCCCEEEEEE
Confidence 666666664 2 3333 566777753332 2 334568899999999982 33445667 999999999
Q ss_pred eCCCcccHHHHHHHHHHHHhCCCCCCCcEEEEEeCCCCCC--CCCHHHHHhHcCccccCCcceEEEEeeecCCCCHHHHH
Q 029517 88 DAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPD--AVSADELARYLDLKKLDERVCMFEAVSGYDGFGIKESV 165 (192)
Q Consensus 88 D~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~e~~ 165 (192)
|++++.+|+.+..|+..+.......++|+++|+||+|+.. .+..++..+++. ..+.+++++||++|.||+++|
T Consensus 81 d~td~~S~~~~~~~~~~l~~~~~~~~~piilV~NK~Dl~~~~~v~~~~~~~~a~-----~~~~~~~e~SA~~~~gv~~l~ 155 (221)
T cd04148 81 SVTDRSSFERASELRIQLRRNRQLEDRPIILVGNKSDLARSREVSVQEGRACAV-----VFDCKFIETSAGLQHNVDELL 155 (221)
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEChhccccceecHHHHHHHHH-----HcCCeEEEecCCCCCCHHHHH
Confidence 9999999999999999887764445799999999999865 344555555554 345789999999999999999
Q ss_pred HHHHHHHHhcch
Q 029517 166 EWLVEVMERSKR 177 (192)
Q Consensus 166 ~~i~~~i~~~~~ 177 (192)
+++.+.+.....
T Consensus 156 ~~l~~~~~~~~~ 167 (221)
T cd04148 156 EGIVRQIRLRRD 167 (221)
T ss_pred HHHHHHHHhhhc
Confidence 999998875443
No 116
>cd04130 Wrch_1 Wrch-1 subfamily. Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus,
Probab=99.89 E-value=4.6e-22 Score=144.51 Aligned_cols=130 Identities=17% Similarity=0.265 Sum_probs=100.7
Q ss_pred CCCCCCCCCCcceEEE---EEEecCEEEEEEeCCCCcccHHHHHHhhhcCCEEEEEEeCCCcccHHHHH-HHHHHHHhCC
Q 029517 34 GLPPDRIVPTVGLNIG---RIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSK-TALEKVLRNE 109 (192)
Q Consensus 34 ~~~~~~~~~T~g~~~~---~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ii~v~D~~~~~s~~~~~-~~~~~i~~~~ 109 (192)
+.+...|.||.+..+. .+++..+++++|||||++++...+..+++++|++|+|||++++++|+.+. .|+..+....
T Consensus 23 ~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~a~~~i~v~d~~~~~sf~~~~~~~~~~~~~~~ 102 (173)
T cd04130 23 NGYPTEYVPTAFDNFSVVVLVDGKPVRLQLCDTAGQDEFDKLRPLCYPDTDVFLLCFSVVNPSSFQNISEKWIPEIRKHN 102 (173)
T ss_pred CCCCCCCCCceeeeeeEEEEECCEEEEEEEEECCCChhhccccccccCCCcEEEEEEECCCHHHHHHHHHHHHHHHHhhC
Confidence 4456677787643332 23334578999999999999988888999999999999999999999885 5877776542
Q ss_pred CCCCCcEEEEEeCCCCCC--------------CCCHHHHHhHcCccccCCcce-EEEEeeecCCCCHHHHHHHHHH
Q 029517 110 DLQGAPLLILANKQDLPD--------------AVSADELARYLDLKKLDERVC-MFEAVSGYDGFGIKESVEWLVE 170 (192)
Q Consensus 110 ~~~~~piiiv~nK~Dl~~--------------~~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~gi~e~~~~i~~ 170 (192)
.+.|+++++||+|+.. .+..+++.++++ ..+. .++++||++|.||+++|+.+..
T Consensus 103 --~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~a~-----~~~~~~~~e~Sa~~~~~v~~lf~~~~~ 171 (173)
T cd04130 103 --PKAPIILVGTQADLRTDVNVLIQLARYGEKPVSQSRAKALAE-----KIGACEYIECSALTQKNLKEVFDTAIL 171 (173)
T ss_pred --CCCCEEEEeeChhhccChhHHHHHhhcCCCCcCHHHHHHHHH-----HhCCCeEEEEeCCCCCCHHHHHHHHHh
Confidence 4699999999999853 234445555554 3344 8999999999999999998764
No 117
>cd01862 Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-
Probab=99.89 E-value=1.8e-21 Score=140.82 Aligned_cols=147 Identities=19% Similarity=0.323 Sum_probs=115.2
Q ss_pred ccccHHHHHHHHhhhhccCCCCCCCCCCCCcceEEEE----EEecCEEEEEEeCCCCcccHHHHHHhhhcCCEEEEEEeC
Q 029517 14 TKTEFHTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGR----IEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDA 89 (192)
Q Consensus 14 kst~~~~l~~~~~~~~~~~~~~~~~~~~~T~g~~~~~----~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ii~v~D~ 89 (192)
|||++|+|++. .+...+.+|++.++.. +.+..+.+.+||+||++.+...+..+++++|++|+|+|+
T Consensus 13 KSsl~~~l~~~----------~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~ 82 (172)
T cd01862 13 KTSLMNQYVNK----------KFSNQYKATIGADFLTKEVTVDDKLVTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDV 82 (172)
T ss_pred HHHHHHHHhcC----------CCCcCcCCccceEEEEEEEEECCEEEEEEEEeCCChHHHHhHHHHHhcCCCEEEEEEEC
Confidence 67777777653 3345566777766542 233457889999999999999999999999999999999
Q ss_pred CCcccHHHHHHHHHHHHhCCC---CCCCcEEEEEeCCCCCC--CCCHHHHHhHcCccccCCc-ceEEEEeeecCCCCHHH
Q 029517 90 ACPSRFEDSKTALEKVLRNED---LQGAPLLILANKQDLPD--AVSADELARYLDLKKLDER-VCMFEAVSGYDGFGIKE 163 (192)
Q Consensus 90 ~~~~s~~~~~~~~~~i~~~~~---~~~~piiiv~nK~Dl~~--~~~~~~~~~~~~~~~~~~~-~~~~~~~Sa~~~~gi~e 163 (192)
.++.+++.+..|...+..... ..++|+++|+||+|+.. ....++...++. .. ..+++++||++|.|+++
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~gv~~ 157 (172)
T cd01862 83 TNPKSFESLDSWRDEFLIQASPSDPENFPFVVLGNKIDLEEKRQVSTKKAQQWCQ-----SNGNIPYFETSAKEAINVEQ 157 (172)
T ss_pred CCHHHHHHHHHHHHHHHHhcCccCCCCceEEEEEECcccccccccCHHHHHHHHH-----HcCCceEEEEECCCCCCHHH
Confidence 999999998888877665432 23789999999999973 445666666655 23 37899999999999999
Q ss_pred HHHHHHHHHHhc
Q 029517 164 SVEWLVEVMERS 175 (192)
Q Consensus 164 ~~~~i~~~i~~~ 175 (192)
+|+++.+.+.+.
T Consensus 158 l~~~i~~~~~~~ 169 (172)
T cd01862 158 AFETIARKALEQ 169 (172)
T ss_pred HHHHHHHHHHhc
Confidence 999999887665
No 118
>cd04114 Rab30 Rab30 subfamily. Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.88 E-value=2.4e-21 Score=139.86 Aligned_cols=143 Identities=22% Similarity=0.344 Sum_probs=108.3
Q ss_pred ccccHHHHHHHHhhhhccCCCCCCCCCCCCcceEEE--EEEe--cCEEEEEEeCCCCcccHHHHHHhhhcCCEEEEEEeC
Q 029517 14 TKTEFHTLLEKLKSVYSNVEGLPPDRIVPTVGLNIG--RIEV--SNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDA 89 (192)
Q Consensus 14 kst~~~~l~~~~~~~~~~~~~~~~~~~~~T~g~~~~--~~~~--~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ii~v~D~ 89 (192)
|||++++|++. .+...+.+|++..+. .+.. ..+.+.+||+||++.+...+..+++.+|++++|+|+
T Consensus 20 KSsli~~l~~~----------~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~ 89 (169)
T cd04114 20 KTCLVRRFTQG----------LFPPGQGATIGVDFMIKTVEIKGEKIKLQIWDTAGQERFRSITQSYYRSANALILTYDI 89 (169)
T ss_pred HHHHHHHHHhC----------CCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhcCCCEEEEEEEC
Confidence 67777776542 334456777776543 2333 347899999999999999989999999999999999
Q ss_pred CCcccHHHHHHHHHHHHhCCCCCCCcEEEEEeCCCCCC--CCCHHHHHhHcCccccCCcceEEEEeeecCCCCHHHHHHH
Q 029517 90 ACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPD--AVSADELARYLDLKKLDERVCMFEAVSGYDGFGIKESVEW 167 (192)
Q Consensus 90 ~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~e~~~~ 167 (192)
+++.+++.+..|+..+..... .+.|+++++||+|+.. .+..+....+.. ....+++++||++|.|++++|++
T Consensus 90 ~~~~s~~~~~~~~~~l~~~~~-~~~~~i~v~NK~D~~~~~~i~~~~~~~~~~-----~~~~~~~~~Sa~~~~gv~~l~~~ 163 (169)
T cd04114 90 TCEESFRCLPEWLREIEQYAN-NKVITILVGNKIDLAERREVSQQRAEEFSD-----AQDMYYLETSAKESDNVEKLFLD 163 (169)
T ss_pred cCHHHHHHHHHHHHHHHHhCC-CCCeEEEEEECcccccccccCHHHHHHHHH-----HcCCeEEEeeCCCCCCHHHHHHH
Confidence 999999999999887765432 4689999999999864 233333333332 22478999999999999999999
Q ss_pred HHHHH
Q 029517 168 LVEVM 172 (192)
Q Consensus 168 i~~~i 172 (192)
|.+.+
T Consensus 164 i~~~~ 168 (169)
T cd04114 164 LACRL 168 (169)
T ss_pred HHHHh
Confidence 98764
No 119
>cd01892 Miro2 Miro2 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=99.88 E-value=8.8e-22 Score=142.64 Aligned_cols=132 Identities=14% Similarity=0.094 Sum_probs=101.7
Q ss_pred CCCC-CCCCCCcceEEE--EE--EecCEEEEEEeCCCCcccHHHHHHhhhcCCEEEEEEeCCCcccHHHHHHHHHHHHhC
Q 029517 34 GLPP-DRIVPTVGLNIG--RI--EVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRN 108 (192)
Q Consensus 34 ~~~~-~~~~~T~g~~~~--~~--~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ii~v~D~~~~~s~~~~~~~~~~i~~~ 108 (192)
+.+. ..|.||++..+. .+ ++..+.+.+||++|++.+...+..+++++|++++|+|++++.+++.+..|+..+...
T Consensus 27 ~~f~~~~~~~T~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~d~~llv~d~~~~~s~~~~~~~~~~~~~~ 106 (169)
T cd01892 27 RSFSLNAYSPTIKPRYAVNTVEVYGQEKYLILREVGEDEVAILLNDAELAACDVACLVYDSSDPKSFSYCAEVYKKYFML 106 (169)
T ss_pred CCCCcccCCCccCcceEEEEEEECCeEEEEEEEecCCcccccccchhhhhcCCEEEEEEeCCCHHHHHHHHHHHHHhccC
Confidence 5555 778999987654 23 344578999999999999888888999999999999999999999988888765432
Q ss_pred CCCCCCcEEEEEeCCCCCCC--CCHHHHHhHcCccccCCcce-EEEEeeecCCCCHHHHHHHHHHHHH
Q 029517 109 EDLQGAPLLILANKQDLPDA--VSADELARYLDLKKLDERVC-MFEAVSGYDGFGIKESVEWLVEVME 173 (192)
Q Consensus 109 ~~~~~~piiiv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~gi~e~~~~i~~~i~ 173 (192)
.++|+++|+||+|+.+. ...++..++.+ ..+. .++++||++|.|++++|+.+.+.+.
T Consensus 107 ---~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~~v~~lf~~l~~~~~ 166 (169)
T cd01892 107 ---GEIPCLFVAAKADLDEQQQRYEVQPDEFCR-----KLGLPPPLHFSSKLGDSSNELFTKLATAAQ 166 (169)
T ss_pred ---CCCeEEEEEEcccccccccccccCHHHHHH-----HcCCCCCEEEEeccCccHHHHHHHHHHHhh
Confidence 47999999999999642 21222233332 1122 3589999999999999999998764
No 120
>cd00154 Rab Rab family. Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di
Probab=99.88 E-value=1.2e-21 Score=139.17 Aligned_cols=140 Identities=26% Similarity=0.431 Sum_probs=115.3
Q ss_pred ccccHHHHHHHHhhhhccCCCCCCCCCCCCcceEEEEE--Ee--cCEEEEEEeCCCCcccHHHHHHhhhcCCEEEEEEeC
Q 029517 14 TKTEFHTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRI--EV--SNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDA 89 (192)
Q Consensus 14 kst~~~~l~~~~~~~~~~~~~~~~~~~~~T~g~~~~~~--~~--~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ii~v~D~ 89 (192)
|||++|+|.+ +.+...+.+|.+.++... .. ..+++.+||+||++.+...+..+++++|++++|+|+
T Consensus 13 KStl~~~l~~----------~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~ii~v~d~ 82 (159)
T cd00154 13 KTSLLLRFVD----------GKFDENYKSTIGVDFKSKTIEIDGKTVKLQIWDTAGQERFRSITPSYYRGAHGAILVYDI 82 (159)
T ss_pred HHHHHHHHHh----------CcCCCccCCceeeeeEEEEEEECCEEEEEEEEecCChHHHHHHHHHHhcCCCEEEEEEEC
Confidence 6777777653 344455678888777643 22 357899999999999999999999999999999999
Q ss_pred CCcccHHHHHHHHHHHHhCCCCCCCcEEEEEeCCCCC--CCCCHHHHHhHcCccccCCcceEEEEeeecCCCCHHHHHHH
Q 029517 90 ACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLP--DAVSADELARYLDLKKLDERVCMFEAVSGYDGFGIKESVEW 167 (192)
Q Consensus 90 ~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~--~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~e~~~~ 167 (192)
+++++++.+..|+..+..... ...|+++++||+|+. .....+++.++.. ..+.+++++||+++.|+++++++
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~-----~~~~~~~~~sa~~~~~i~~~~~~ 156 (159)
T cd00154 83 TNRESFENLDKWLKELKEYAP-ENIPIILVGNKIDLEDQRQVSTEEAQQFAK-----ENGLLFFETSAKTGENVEELFQS 156 (159)
T ss_pred CCHHHHHHHHHHHHHHHHhCC-CCCcEEEEEEcccccccccccHHHHHHHHH-----HcCCeEEEEecCCCCCHHHHHHH
Confidence 999999999999998887642 478999999999995 4667777777776 45789999999999999999999
Q ss_pred HH
Q 029517 168 LV 169 (192)
Q Consensus 168 i~ 169 (192)
|.
T Consensus 157 i~ 158 (159)
T cd00154 157 LA 158 (159)
T ss_pred Hh
Confidence 86
No 121
>cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily. Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le
Probab=99.88 E-value=2.1e-21 Score=141.75 Aligned_cols=149 Identities=22% Similarity=0.294 Sum_probs=115.0
Q ss_pred ccccHHHHHHHHhhhhccCCCCCCCCCCCCcceEEE-EEEe--cCEEEEEEeCCCCcccHHHHHHhhhcCCEEEEEEeCC
Q 029517 14 TKTEFHTLLEKLKSVYSNVEGLPPDRIVPTVGLNIG-RIEV--SNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAA 90 (192)
Q Consensus 14 kst~~~~l~~~~~~~~~~~~~~~~~~~~~T~g~~~~-~~~~--~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ii~v~D~~ 90 (192)
|||+++++++ +.+...+.||.+..+. .+.. ..+.+.+||+||++++...+..++..++++++|+|++
T Consensus 14 KTtl~~~~~~----------~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~ 83 (180)
T cd04137 14 KSSLTVQFVE----------GHFVESYYPTIENTFSKIIRYKGQDYHLEIVDTAGQDEYSILPQKYSIGIHGYILVYSVT 83 (180)
T ss_pred HHHHHHHHHh----------CCCccccCcchhhhEEEEEEECCEEEEEEEEECCChHhhHHHHHHHHhhCCEEEEEEECC
Confidence 6777777763 3334555666654433 2333 3467899999999999999999999999999999999
Q ss_pred CcccHHHHHHHHHHHHhCCCCCCCcEEEEEeCCCCCC--CCCHHHHHhHcCccccCCcceEEEEeeecCCCCHHHHHHHH
Q 029517 91 CPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPD--AVSADELARYLDLKKLDERVCMFEAVSGYDGFGIKESVEWL 168 (192)
Q Consensus 91 ~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~e~~~~i 168 (192)
+..+++.+..|+..+.+.....+.|+++++||+|+.. ....++...... ..+.+++++||++|.|+.++++++
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~gv~~l~~~l 158 (180)
T cd04137 84 SRKSFEVVKVIYDKILDMLGKESVPIVLVGNKSDLHTQRQVSTEEGKELAE-----SWGAAFLESSARENENVEEAFELL 158 (180)
T ss_pred CHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEchhhhhcCccCHHHHHHHHH-----HcCCeEEEEeCCCCCCHHHHHHHH
Confidence 9999999999988888754445789999999999864 334444444443 334789999999999999999999
Q ss_pred HHHHHhcch
Q 029517 169 VEVMERSKR 177 (192)
Q Consensus 169 ~~~i~~~~~ 177 (192)
.+.+.+...
T Consensus 159 ~~~~~~~~~ 167 (180)
T cd04137 159 IEEIEKVEN 167 (180)
T ss_pred HHHHHHhcC
Confidence 998876543
No 122
>cd04147 Ras_dva Ras-dva subfamily. Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=99.88 E-value=5.8e-21 Score=141.75 Aligned_cols=146 Identities=18% Similarity=0.208 Sum_probs=110.5
Q ss_pred ccccHHHHHHHHhhhhccCCCCCCCCCCCCcceE-EEEEEe--cCEEEEEEeCCCCcccHHHHHHhhhcCCEEEEEEeCC
Q 029517 14 TKTEFHTLLEKLKSVYSNVEGLPPDRIVPTVGLN-IGRIEV--SNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAA 90 (192)
Q Consensus 14 kst~~~~l~~~~~~~~~~~~~~~~~~~~~T~g~~-~~~~~~--~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ii~v~D~~ 90 (192)
|||+++++++ +.+...+.+|++.. ...+.. ..+.+++||+||++.|..++..+++.+|++|+|+|++
T Consensus 12 KTsll~~~~~----------~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~ad~vilv~d~~ 81 (198)
T cd04147 12 KTALIQRFLY----------DTFEPKYRRTVEEMHRKEYEVGGVSLTLDILDTSGSYSFPAMRKLSIQNSDAFALVYAVD 81 (198)
T ss_pred HHHHHHHHHh----------CCCCccCCCchhhheeEEEEECCEEEEEEEEECCCchhhhHHHHHHhhcCCEEEEEEECC
Confidence 6777777653 33445566666422 223333 3478999999999999999999999999999999999
Q ss_pred CcccHHHHHHHHHHHHhCCCCCCCcEEEEEeCCCCCC---CCCHHHHHhHcCccccCCcceEEEEeeecCCCCHHHHHHH
Q 029517 91 CPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPD---AVSADELARYLDLKKLDERVCMFEAVSGYDGFGIKESVEW 167 (192)
Q Consensus 91 ~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~---~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~e~~~~ 167 (192)
++.+++.+..|+..+.......++|+++|+||+|+.. .+..+...+... ...+..++++||++|.|++++|++
T Consensus 82 ~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~~v~~~~~~~~~~----~~~~~~~~~~Sa~~g~gv~~l~~~ 157 (198)
T cd04147 82 DPESFEEVERLREEILEVKEDKFVPIVVVGNKADSLEEERQVPAKDALSTVE----LDWNCGFVETSAKDNENVLEVFKE 157 (198)
T ss_pred CHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEccccccccccccHHHHHHHHH----hhcCCcEEEecCCCCCCHHHHHHH
Confidence 9999999999998888765445799999999999864 233333333322 022467899999999999999999
Q ss_pred HHHHHH
Q 029517 168 LVEVME 173 (192)
Q Consensus 168 i~~~i~ 173 (192)
+.+.+.
T Consensus 158 l~~~~~ 163 (198)
T cd04147 158 LLRQAN 163 (198)
T ss_pred HHHHhh
Confidence 998765
No 123
>cd04129 Rho2 Rho2 subfamily. Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors).
Probab=99.87 E-value=1.8e-21 Score=143.19 Aligned_cols=149 Identities=21% Similarity=0.301 Sum_probs=111.4
Q ss_pred ccccHHHHHHHHhhhhccCCCCCCCCCCCCcceEEEE---EEecCEEEEEEeCCCCcccHHHHHHhhhcCCEEEEEEeCC
Q 029517 14 TKTEFHTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGR---IEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAA 90 (192)
Q Consensus 14 kst~~~~l~~~~~~~~~~~~~~~~~~~~~T~g~~~~~---~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ii~v~D~~ 90 (192)
|||+++++. . +.+...+.||.+..+.. +....+.+.+||++|++.+......+++.++++++|||++
T Consensus 14 KStLl~~l~----~------~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~a~~~llv~~i~ 83 (187)
T cd04129 14 KTSLLSVFT----L------GEFPEEYHPTVFENYVTDCRVDGKPVQLALWDTAGQEEYERLRPLSYSKAHVILIGFAVD 83 (187)
T ss_pred HHHHHHHHH----h------CCCCcccCCcccceEEEEEEECCEEEEEEEEECCCChhccccchhhcCCCCEEEEEEECC
Confidence 677777664 2 34445667777665542 2333577999999999988777767789999999999999
Q ss_pred CcccHHHHH-HHHHHHHhCCCCCCCcEEEEEeCCCCCC------------CCCHHHHHhHcCccccCCcc-eEEEEeeec
Q 029517 91 CPSRFEDSK-TALEKVLRNEDLQGAPLLILANKQDLPD------------AVSADELARYLDLKKLDERV-CMFEAVSGY 156 (192)
Q Consensus 91 ~~~s~~~~~-~~~~~i~~~~~~~~~piiiv~nK~Dl~~------------~~~~~~~~~~~~~~~~~~~~-~~~~~~Sa~ 156 (192)
+.++++.+. .|+..+.... .+.|+++|+||+|+.. .++.++...+++ ..+ .+++++||+
T Consensus 84 ~~~s~~~~~~~~~~~i~~~~--~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~e~Sa~ 156 (187)
T cd04129 84 TPDSLENVRTKWIEEVRRYC--PNVPVILVGLKKDLRQDAVAKEEYRTQRFVPIQQGKRVAK-----EIGAKKYMECSAL 156 (187)
T ss_pred CHHHHHHHHHHHHHHHHHhC--CCCCEEEEeeChhhhhCcccccccccCCcCCHHHHHHHHH-----HhCCcEEEEccCC
Confidence 999999986 5888877653 4699999999999843 122334444443 233 479999999
Q ss_pred CCCCHHHHHHHHHHHHHhcchhh
Q 029517 157 DGFGIKESVEWLVEVMERSKRTE 179 (192)
Q Consensus 157 ~~~gi~e~~~~i~~~i~~~~~~~ 179 (192)
+|.||+++|+++.+.+...+..+
T Consensus 157 ~~~~v~~~f~~l~~~~~~~~~~~ 179 (187)
T cd04129 157 TGEGVDDVFEAATRAALLVRKSE 179 (187)
T ss_pred CCCCHHHHHHHHHHHHhcccCcc
Confidence 99999999999999887766443
No 124
>cd01870 RhoA_like RhoA-like subfamily. The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranyl
Probab=99.87 E-value=2.8e-21 Score=140.40 Aligned_cols=143 Identities=18% Similarity=0.255 Sum_probs=105.7
Q ss_pred ccccHHHHHHHHhhhhccCCCCCCCCCCCCcceEEE-EE--EecCEEEEEEeCCCCcccHHHHHHhhhcCCEEEEEEeCC
Q 029517 14 TKTEFHTLLEKLKSVYSNVEGLPPDRIVPTVGLNIG-RI--EVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAA 90 (192)
Q Consensus 14 kst~~~~l~~~~~~~~~~~~~~~~~~~~~T~g~~~~-~~--~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ii~v~D~~ 90 (192)
|||+++++. . +.+...|.||++..+. .+ ....+.+.+|||+|++.|...+..+++++|++++|||++
T Consensus 14 KTsl~~~~~----~------~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~~~~ 83 (175)
T cd01870 14 KTCLLIVFS----K------DQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSID 83 (175)
T ss_pred HHHHHHHHh----c------CCCCCCCCCccccceEEEEEECCEEEEEEEEeCCCchhhhhccccccCCCCEEEEEEECC
Confidence 566665554 3 4555677888887653 33 334578999999999999888888899999999999999
Q ss_pred CcccHHHHH-HHHHHHHhCCCCCCCcEEEEEeCCCCCCCCC--------------HHHHHhHcCccccCCcceEEEEeee
Q 029517 91 CPSRFEDSK-TALEKVLRNEDLQGAPLLILANKQDLPDAVS--------------ADELARYLDLKKLDERVCMFEAVSG 155 (192)
Q Consensus 91 ~~~s~~~~~-~~~~~i~~~~~~~~~piiiv~nK~Dl~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~Sa 155 (192)
+.++++.+. .|+..+.... .+.|+++++||+|+..... .++..++.+ .....++++|||
T Consensus 84 ~~~s~~~~~~~~~~~~~~~~--~~~piilv~nK~Dl~~~~~~~~~i~~~~~~~v~~~~~~~~~~----~~~~~~~~~~Sa 157 (175)
T cd01870 84 SPDSLENIPEKWTPEVKHFC--PNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMAN----KIGAFGYMECSA 157 (175)
T ss_pred CHHHHHHHHHHHHHHHHhhC--CCCCEEEEeeChhcccChhhhhhhhhccCCCccHHHHHHHHH----HcCCcEEEEecc
Confidence 999998885 4777666542 4789999999999864211 122222222 112358999999
Q ss_pred cCCCCHHHHHHHHHHHH
Q 029517 156 YDGFGIKESVEWLVEVM 172 (192)
Q Consensus 156 ~~~~gi~e~~~~i~~~i 172 (192)
++|.||+++|++|.+.+
T Consensus 158 ~~~~~v~~lf~~l~~~~ 174 (175)
T cd01870 158 KTKEGVREVFEMATRAA 174 (175)
T ss_pred ccCcCHHHHHHHHHHHh
Confidence 99999999999998754
No 125
>cd04135 Tc10 TC10 subfamily. TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interacti
Probab=99.87 E-value=3.1e-21 Score=140.00 Aligned_cols=142 Identities=16% Similarity=0.228 Sum_probs=106.6
Q ss_pred ccccHHHHHHHHhhhhccCCCCCCCCCCCCcceEEE-E--EEecCEEEEEEeCCCCcccHHHHHHhhhcCCEEEEEEeCC
Q 029517 14 TKTEFHTLLEKLKSVYSNVEGLPPDRIVPTVGLNIG-R--IEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAA 90 (192)
Q Consensus 14 kst~~~~l~~~~~~~~~~~~~~~~~~~~~T~g~~~~-~--~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ii~v~D~~ 90 (192)
|||+++++.+ +.+...+.||++..+. . ++...+.+.+|||||++.|...+..+++++|++++|+|++
T Consensus 13 KTsl~~~~~~----------~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~~~~ 82 (174)
T cd04135 13 KTCLLMSYAN----------DAFPEEYVPTVFDHYAVSVTVGGKQYLLGLYDTAGQEDYDRLRPLSYPMTDVFLICFSVV 82 (174)
T ss_pred HHHHHHHHHh----------CCCCCCCCCceeeeeEEEEEECCEEEEEEEEeCCCcccccccccccCCCCCEEEEEEECC
Confidence 6666666643 3455667777764443 2 3333567899999999999988989999999999999999
Q ss_pred CcccHHHHH-HHHHHHHhCCCCCCCcEEEEEeCCCCCCC--------------CCHHHHHhHcCccccCCcc-eEEEEee
Q 029517 91 CPSRFEDSK-TALEKVLRNEDLQGAPLLILANKQDLPDA--------------VSADELARYLDLKKLDERV-CMFEAVS 154 (192)
Q Consensus 91 ~~~s~~~~~-~~~~~i~~~~~~~~~piiiv~nK~Dl~~~--------------~~~~~~~~~~~~~~~~~~~-~~~~~~S 154 (192)
++.+|+.+. .|+..+... ..+.|+++++||+|+.+. ++.+++..++. ..+ ..++++|
T Consensus 83 ~~~s~~~~~~~~~~~l~~~--~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~-----~~~~~~~~e~S 155 (174)
T cd04135 83 NPASFQNVKEEWVPELKEY--APNVPYLLVGTQIDLRDDPKTLARLNDMKEKPVTVEQGQKLAK-----EIGAHCYVECS 155 (174)
T ss_pred CHHHHHHHHHHHHHHHHhh--CCCCCEEEEeEchhhhcChhhHHHHhhccCCCCCHHHHHHHHH-----HcCCCEEEEec
Confidence 999999886 466666544 267999999999998542 33344444443 223 4799999
Q ss_pred ecCCCCHHHHHHHHHHHH
Q 029517 155 GYDGFGIKESVEWLVEVM 172 (192)
Q Consensus 155 a~~~~gi~e~~~~i~~~i 172 (192)
|++|.||+++|+.+.+.+
T Consensus 156 a~~~~gi~~~f~~~~~~~ 173 (174)
T cd04135 156 ALTQKGLKTVFDEAILAI 173 (174)
T ss_pred CCcCCCHHHHHHHHHHHh
Confidence 999999999999998865
No 126
>cd00876 Ras Ras family. The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m
Probab=99.86 E-value=5.2e-21 Score=136.56 Aligned_cols=143 Identities=24% Similarity=0.309 Sum_probs=112.7
Q ss_pred ccccHHHHHHHHhhhhccCCCCCCCCCCCCcceEEE-EEEec--CEEEEEEeCCCCcccHHHHHHhhhcCCEEEEEEeCC
Q 029517 14 TKTEFHTLLEKLKSVYSNVEGLPPDRIVPTVGLNIG-RIEVS--NSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAA 90 (192)
Q Consensus 14 kst~~~~l~~~~~~~~~~~~~~~~~~~~~T~g~~~~-~~~~~--~~~~~i~D~~G~~~~~~~~~~~~~~~d~ii~v~D~~ 90 (192)
|||++++|++. .+...+.||.+..+. .+... .+.+++||+||++.+...+..+++.+|++++|+|++
T Consensus 12 KTsli~~l~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~ 81 (160)
T cd00876 12 KSAITIQFVKG----------TFVEEYDPTIEDSYRKTIVVDGETYTLDILDTAGQEEFSAMRDLYIRQGDGFILVYSIT 81 (160)
T ss_pred HHHHHHHHHhC----------CCCcCcCCChhHeEEEEEEECCEEEEEEEEECCChHHHHHHHHHHHhcCCEEEEEEECC
Confidence 67777777543 244555666663333 23333 578999999999999999999999999999999999
Q ss_pred CcccHHHHHHHHHHHHhCCCCCCCcEEEEEeCCCCCC--CCCHHHHHhHcCccccCCcceEEEEeeecCCCCHHHHHHHH
Q 029517 91 CPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPD--AVSADELARYLDLKKLDERVCMFEAVSGYDGFGIKESVEWL 168 (192)
Q Consensus 91 ~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~e~~~~i 168 (192)
++++++.+..|...+.........|+++++||+|+.. ....+++.+... ..+.+++++||+++.|++++|++|
T Consensus 82 ~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~-----~~~~~~~~~S~~~~~~i~~l~~~l 156 (160)
T cd00876 82 DRESFEEIKGYREQILRVKDDEDIPIVLVGNKCDLENERQVSKEEGKALAK-----EWGCPFIETSAKDNINIDEVFKLL 156 (160)
T ss_pred CHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECCcccccceecHHHHHHHHH-----HcCCcEEEeccCCCCCHHHHHHHH
Confidence 9999999999998888765435799999999999875 345566666665 334789999999999999999999
Q ss_pred HHH
Q 029517 169 VEV 171 (192)
Q Consensus 169 ~~~ 171 (192)
.+.
T Consensus 157 ~~~ 159 (160)
T cd00876 157 VRE 159 (160)
T ss_pred Hhh
Confidence 875
No 127
>PTZ00132 GTP-binding nuclear protein Ran; Provisional
Probab=99.85 E-value=5e-20 Score=138.39 Aligned_cols=135 Identities=15% Similarity=0.379 Sum_probs=110.9
Q ss_pred CCCCCCCCCCcceEEEEEE----ecCEEEEEEeCCCCcccHHHHHHhhhcCCEEEEEEeCCCcccHHHHHHHHHHHHhCC
Q 029517 34 GLPPDRIVPTVGLNIGRIE----VSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNE 109 (192)
Q Consensus 34 ~~~~~~~~~T~g~~~~~~~----~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ii~v~D~~~~~s~~~~~~~~~~i~~~~ 109 (192)
+.+...|.||+|.++.... .+.+.+++|||+|++++...+..+++.++++++|+|+++..++..+..|+..+....
T Consensus 32 ~~~~~~~~~t~~~~~~~~~~~~~~~~i~i~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~ 111 (215)
T PTZ00132 32 GEFEKKYIPTLGVEVHPLKFYTNCGPICFNVWDTAGQEKFGGLRDGYYIKGQCAIIMFDVTSRITYKNVPNWHRDIVRVC 111 (215)
T ss_pred CCCCCCCCCccceEEEEEEEEECCeEEEEEEEECCCchhhhhhhHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhC
Confidence 5567788999999887643 356899999999999999899999999999999999999999999999999887654
Q ss_pred CCCCCcEEEEEeCCCCCCCCCHHHHHhHcCccccCCcceEEEEeeecCCCCHHHHHHHHHHHHHhc
Q 029517 110 DLQGAPLLILANKQDLPDAVSADELARYLDLKKLDERVCMFEAVSGYDGFGIKESVEWLVEVMERS 175 (192)
Q Consensus 110 ~~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~e~~~~i~~~i~~~ 175 (192)
.++|+++++||+|+.+.....+..++.. ..++.++++||++|.|++++|.+|.+.+...
T Consensus 112 --~~~~i~lv~nK~Dl~~~~~~~~~~~~~~-----~~~~~~~e~Sa~~~~~v~~~f~~ia~~l~~~ 170 (215)
T PTZ00132 112 --ENIPIVLVGNKVDVKDRQVKARQITFHR-----KKNLQYYDISAKSNYNFEKPFLWLARRLTND 170 (215)
T ss_pred --CCCCEEEEEECccCccccCCHHHHHHHH-----HcCCEEEEEeCCCCCCHHHHHHHHHHHHhhc
Confidence 4789999999999865322222233333 3467899999999999999999999988754
No 128
>cd01893 Miro1 Miro1 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=99.85 E-value=6.4e-20 Score=132.35 Aligned_cols=118 Identities=18% Similarity=0.220 Sum_probs=91.2
Q ss_pred EEecCEEEEEEeCCCCcccHHHHHHhhhcCCEEEEEEeCCCcccHHHHH-HHHHHHHhCCCCCCCcEEEEEeCCCCCCCC
Q 029517 51 IEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSK-TALEKVLRNEDLQGAPLLILANKQDLPDAV 129 (192)
Q Consensus 51 ~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ii~v~D~~~~~s~~~~~-~~~~~i~~~~~~~~~piiiv~nK~Dl~~~~ 129 (192)
+....+++++|||||++.+...+..+++.+|++++|+|++++.+++.+. .|+..+.... .+.|+++|+||+|+.+..
T Consensus 42 ~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~~i~~~~--~~~pviiv~nK~Dl~~~~ 119 (166)
T cd01893 42 VTPERVPTTIVDTSSRPQDRANLAAEIRKANVICLVYSVDRPSTLERIRTKWLPLIRRLG--VKVPIILVGNKSDLRDGS 119 (166)
T ss_pred ecCCeEEEEEEeCCCchhhhHHHhhhcccCCEEEEEEECCCHHHHHHHHHHHHHHHHHhC--CCCCEEEEEEchhccccc
Confidence 3345789999999999988888888889999999999999999999975 5666665543 479999999999997643
Q ss_pred CH----HHHHhHcCccccCCcc-eEEEEeeecCCCCHHHHHHHHHHHHHh
Q 029517 130 SA----DELARYLDLKKLDERV-CMFEAVSGYDGFGIKESVEWLVEVMER 174 (192)
Q Consensus 130 ~~----~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~gi~e~~~~i~~~i~~ 174 (192)
.. +++....+ .... .+++++||++|.|++++|+.+.+.+.+
T Consensus 120 ~~~~~~~~~~~~~~----~~~~~~~~~e~Sa~~~~~v~~lf~~~~~~~~~ 165 (166)
T cd01893 120 SQAGLEEEMLPIMN----EFREIETCVECSAKTLINVSEVFYYAQKAVLH 165 (166)
T ss_pred chhHHHHHHHHHHH----HHhcccEEEEeccccccCHHHHHHHHHHHhcC
Confidence 31 22222211 0111 379999999999999999999987764
No 129
>cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans. NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins.
Probab=99.84 E-value=9.6e-20 Score=131.37 Aligned_cols=144 Identities=17% Similarity=0.150 Sum_probs=98.0
Q ss_pred ccccHHHHHHHHhhhhccCCCCCCCCCCCCcceEEEEEEecCEEEEEEeCCCCccc----H-----HHHHHhhhcCCEEE
Q 029517 14 TKTEFHTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPGL----R-----SIWEKYYEEAHAVV 84 (192)
Q Consensus 14 kst~~~~l~~~~~~~~~~~~~~~~~~~~~T~g~~~~~~~~~~~~~~i~D~~G~~~~----~-----~~~~~~~~~~d~ii 84 (192)
|||++|+|.+.... . .....+|.+.....+....+.+++|||||+... . .........+|+++
T Consensus 13 Kssli~~l~~~~~~----~----~~~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~d~~l 84 (168)
T cd01897 13 KSSLVNKLTRAKPE----V----APYPFTTKSLFVGHFDYKYLRWQVIDTPGLLDRPLEERNTIEMQAITALAHLRAAVL 84 (168)
T ss_pred HHHHHHHHhcCCCc----c----CCCCCcccceeEEEEccCceEEEEEECCCcCCccccCCchHHHHHHHHHHhccCcEE
Confidence 78888887654221 1 112244666766666667789999999997421 0 11111123368999
Q ss_pred EEEeCCCccc--HHHHHHHHHHHHhCCCCCCCcEEEEEeCCCCCCCCCHHHHHhHcCccccCCcceEEEEeeecCCCCHH
Q 029517 85 FVIDAACPSR--FEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAVSADELARYLDLKKLDERVCMFEAVSGYDGFGIK 162 (192)
Q Consensus 85 ~v~D~~~~~s--~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~ 162 (192)
+|+|+++..+ ++....|+..+.... .+.|+++|+||+|+.......+..++.. ....+++++||++|.|++
T Consensus 85 ~v~d~~~~~~~~~~~~~~~~~~l~~~~--~~~pvilv~NK~Dl~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~gi~ 157 (168)
T cd01897 85 FLFDPSETCGYSLEEQLSLFEEIKPLF--KNKPVIVVLNKIDLLTFEDLSEIEEEEE-----LEGEEVLKISTLTEEGVD 157 (168)
T ss_pred EEEeCCcccccchHHHHHHHHHHHhhc--CcCCeEEEEEccccCchhhHHHHHHhhh-----hccCceEEEEecccCCHH
Confidence 9999998764 366667777775542 4799999999999976433333333333 346789999999999999
Q ss_pred HHHHHHHHHH
Q 029517 163 ESVEWLVEVM 172 (192)
Q Consensus 163 e~~~~i~~~i 172 (192)
++++++.+.+
T Consensus 158 ~l~~~l~~~~ 167 (168)
T cd01897 158 EVKNKACELL 167 (168)
T ss_pred HHHHHHHHHh
Confidence 9999998875
No 130
>cd01890 LepA LepA subfamily. LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype.
Probab=99.83 E-value=1.1e-19 Score=132.47 Aligned_cols=146 Identities=18% Similarity=0.218 Sum_probs=99.4
Q ss_pred ccccHHHHHHHHhhhhccCCCCCCCCCCCC------cceEEE----EE-----EecCEEEEEEeCCCCcccHHHHHHhhh
Q 029517 14 TKTEFHTLLEKLKSVYSNVEGLPPDRIVPT------VGLNIG----RI-----EVSNSKLVFWDLGGQPGLRSIWEKYYE 78 (192)
Q Consensus 14 kst~~~~l~~~~~~~~~~~~~~~~~~~~~T------~g~~~~----~~-----~~~~~~~~i~D~~G~~~~~~~~~~~~~ 78 (192)
|||++++|++...... + ..+...+.+| .|..+. .+ +...+.+.+|||||++++...+..+++
T Consensus 13 KssL~~~l~~~~~~~~-~--~~~~~~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~ 89 (179)
T cd01890 13 KSTLADRLLELTGTVS-K--REMKEQVLDSMDLERERGITIKAQTVRLNYKAKDGQEYLLNLIDTPGHVDFSYEVSRSLA 89 (179)
T ss_pred HHHHHHHHHHHhCCCC-c--CCCceEeccCChhHHHCCCeEecceEEEEEecCCCCcEEEEEEECCCChhhHHHHHHHHH
Confidence 8999999987532211 0 1112223332 233332 12 345788999999999999999999999
Q ss_pred cCCEEEEEEeCCCcccHHHHHHHHHHHHhCCCCCCCcEEEEEeCCCCCCCCCHH---HHHhHcCccccCCcceEEEEeee
Q 029517 79 EAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAVSAD---ELARYLDLKKLDERVCMFEAVSG 155 (192)
Q Consensus 79 ~~d~ii~v~D~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~~~~~~---~~~~~~~~~~~~~~~~~~~~~Sa 155 (192)
.+|++|+|+|+++..+.+....|.... . .++|+++|+||+|+.+....+ ++.+... .....++++||
T Consensus 90 ~ad~~i~v~D~~~~~~~~~~~~~~~~~-~----~~~~iiiv~NK~Dl~~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa 159 (179)
T cd01890 90 ACEGALLLVDATQGVEAQTLANFYLAL-E----NNLEIIPVINKIDLPSADPERVKQQIEDVLG-----LDPSEAILVSA 159 (179)
T ss_pred hcCeEEEEEECCCCccHhhHHHHHHHH-H----cCCCEEEEEECCCCCcCCHHHHHHHHHHHhC-----CCcccEEEeec
Confidence 999999999999876666655553322 1 368999999999986532221 2222222 11235899999
Q ss_pred cCCCCHHHHHHHHHHHH
Q 029517 156 YDGFGIKESVEWLVEVM 172 (192)
Q Consensus 156 ~~~~gi~e~~~~i~~~i 172 (192)
++|.|++++|++|.+.+
T Consensus 160 ~~g~gi~~l~~~l~~~~ 176 (179)
T cd01890 160 KTGLGVEDLLEAIVERI 176 (179)
T ss_pred cCCCCHHHHHHHHHhhC
Confidence 99999999999998764
No 131
>cd00157 Rho Rho (Ras homology) family. Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein
Probab=99.83 E-value=1e-19 Score=131.49 Aligned_cols=140 Identities=21% Similarity=0.294 Sum_probs=102.4
Q ss_pred ccccHHHHHHHHhhhhccCCCCCCCCCCCCcceEEEE---EEecCEEEEEEeCCCCcccHHHHHHhhhcCCEEEEEEeCC
Q 029517 14 TKTEFHTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGR---IEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAA 90 (192)
Q Consensus 14 kst~~~~l~~~~~~~~~~~~~~~~~~~~~T~g~~~~~---~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ii~v~D~~ 90 (192)
|||++++|++. .+...+.||....... ..+..+.+++||+||++.+......+++.+|++++|||++
T Consensus 13 KSsli~~l~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~ 82 (171)
T cd00157 13 KTCLLISYTTG----------KFPTEYVPTVFDNYSATVTVDGKQVNLGLWDTAGQEEYDRLRPLSYPNTDVFLICFSVD 82 (171)
T ss_pred HHHHHHHHHhC----------CCCCCCCCceeeeeEEEEEECCEEEEEEEEeCCCcccccccchhhcCCCCEEEEEEECC
Confidence 66666666543 3334556666544332 3344678999999999988878888889999999999999
Q ss_pred CcccHHHHHH-HHHHHHhCCCCCCCcEEEEEeCCCCCCCC-------------CHHHHHhHcCccccCCcce-EEEEeee
Q 029517 91 CPSRFEDSKT-ALEKVLRNEDLQGAPLLILANKQDLPDAV-------------SADELARYLDLKKLDERVC-MFEAVSG 155 (192)
Q Consensus 91 ~~~s~~~~~~-~~~~i~~~~~~~~~piiiv~nK~Dl~~~~-------------~~~~~~~~~~~~~~~~~~~-~~~~~Sa 155 (192)
++.++..+.. |+..+.... .+.|+++|+||+|+.... ..++..+... ..+. +++++||
T Consensus 83 ~~~s~~~~~~~~~~~~~~~~--~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~v~~~~~~~~~~-----~~~~~~~~~~Sa 155 (171)
T cd00157 83 SPSSFENVKTKWIPEIRHYC--PNVPIILVGTKIDLRDDENTLKKLEKGKEPITPEEGEKLAK-----EIGAIGYMECSA 155 (171)
T ss_pred CHHHHHHHHHHHHHHHHhhC--CCCCEEEEEccHHhhhchhhhhhcccCCCccCHHHHHHHHH-----HhCCeEEEEeec
Confidence 9888877654 666665543 479999999999987533 2334444443 2333 8999999
Q ss_pred cCCCCHHHHHHHHHH
Q 029517 156 YDGFGIKESVEWLVE 170 (192)
Q Consensus 156 ~~~~gi~e~~~~i~~ 170 (192)
++|.|++++|++|.+
T Consensus 156 ~~~~gi~~l~~~i~~ 170 (171)
T cd00157 156 LTQEGVKEVFEEAIR 170 (171)
T ss_pred CCCCCHHHHHHHHhh
Confidence 999999999999875
No 132
>cd01898 Obg Obg subfamily. The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain.
Probab=99.83 E-value=2e-19 Score=129.88 Aligned_cols=146 Identities=23% Similarity=0.271 Sum_probs=98.7
Q ss_pred ccccHHHHHHHHhhhhccCCCCCCCCCCCCcceEEEEEEecC-EEEEEEeCCCCc----c---cHHHHHHhhhcCCEEEE
Q 029517 14 TKTEFHTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSN-SKLVFWDLGGQP----G---LRSIWEKYYEEAHAVVF 85 (192)
Q Consensus 14 kst~~~~l~~~~~~~~~~~~~~~~~~~~~T~g~~~~~~~~~~-~~~~i~D~~G~~----~---~~~~~~~~~~~~d~ii~ 85 (192)
|||++|+|.+... .+...+..++.|++|. +...+ .++.+|||||+. . +...+...++.+|++++
T Consensus 13 KStl~~~l~~~~~----~v~~~~~~t~~~~~~~----~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~d~vi~ 84 (170)
T cd01898 13 KSTLLSAISNAKP----KIADYPFTTLVPNLGV----VRVDDGRSFVVADIPGLIEGASEGKGLGHRFLRHIERTRLLLH 84 (170)
T ss_pred HHHHHHHHhcCCc----cccCCCccccCCcceE----EEcCCCCeEEEEecCcccCcccccCCchHHHHHHHHhCCEEEE
Confidence 7888888875322 2222222333444443 44444 489999999963 1 12222233456999999
Q ss_pred EEeCCCc-ccHHHHHHHHHHHHhCCC-CCCCcEEEEEeCCCCCCCCCHH-HHHhHcCccccCCcceEEEEeeecCCCCHH
Q 029517 86 VIDAACP-SRFEDSKTALEKVLRNED-LQGAPLLILANKQDLPDAVSAD-ELARYLDLKKLDERVCMFEAVSGYDGFGIK 162 (192)
Q Consensus 86 v~D~~~~-~s~~~~~~~~~~i~~~~~-~~~~piiiv~nK~Dl~~~~~~~-~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~ 162 (192)
|+|+++. .+++.+..|.+.+..... ..++|+++|+||+|+....... .+..... .....+++++||+++.|++
T Consensus 85 v~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~----~~~~~~~~~~Sa~~~~gi~ 160 (170)
T cd01898 85 VIDLSGDDDPVEDYKTIRNELELYNPELLEKPRIVVLNKIDLLDEEELFELLKELLK----ELWGKPVFPISALTGEGLD 160 (170)
T ss_pred EEecCCCCCHHHHHHHHHHHHHHhCccccccccEEEEEchhcCCchhhHHHHHHHHh----hCCCCCEEEEecCCCCCHH
Confidence 9999998 788888888888766432 2468999999999986643332 2333333 1135679999999999999
Q ss_pred HHHHHHHHH
Q 029517 163 ESVEWLVEV 171 (192)
Q Consensus 163 e~~~~i~~~ 171 (192)
++|+++.+.
T Consensus 161 ~l~~~i~~~ 169 (170)
T cd01898 161 ELLRKLAEL 169 (170)
T ss_pred HHHHHHHhh
Confidence 999999864
No 133
>PRK12299 obgE GTPase CgtA; Reviewed
Probab=99.82 E-value=4.3e-19 Score=140.89 Aligned_cols=150 Identities=22% Similarity=0.285 Sum_probs=107.4
Q ss_pred ccccHHHHHHHHhhhhccCCCCCCCCCCCCcceEEEEEEe-cCEEEEEEeCCCCc-------ccHHHHHHhhhcCCEEEE
Q 029517 14 TKTEFHTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEV-SNSKLVFWDLGGQP-------GLRSIWEKYYEEAHAVVF 85 (192)
Q Consensus 14 kst~~~~l~~~~~~~~~~~~~~~~~~~~~T~g~~~~~~~~-~~~~~~i~D~~G~~-------~~~~~~~~~~~~~d~ii~ 85 (192)
|||++|+|.+ ..+++++++.++..|++|. +.. ....+.+||+||.. .....+..+++.|+++++
T Consensus 171 KSTLln~ls~----a~~~va~ypfTT~~p~~G~----v~~~~~~~~~i~D~PGli~ga~~~~gLg~~flrhie~a~vlI~ 242 (335)
T PRK12299 171 KSTLISAVSA----AKPKIADYPFTTLHPNLGV----VRVDDYKSFVIADIPGLIEGASEGAGLGHRFLKHIERTRLLLH 242 (335)
T ss_pred HHHHHHHHHc----CCCccCCCCCceeCceEEE----EEeCCCcEEEEEeCCCccCCCCccccHHHHHHHHhhhcCEEEE
Confidence 5666666654 3456667766655565554 554 45689999999953 133344557788999999
Q ss_pred EEeCCCcccHHHHHHHHHHHHhCCC-CCCCcEEEEEeCCCCCCCCC--HHHHHhHcCccccCCcceEEEEeeecCCCCHH
Q 029517 86 VIDAACPSRFEDSKTALEKVLRNED-LQGAPLLILANKQDLPDAVS--ADELARYLDLKKLDERVCMFEAVSGYDGFGIK 162 (192)
Q Consensus 86 v~D~~~~~s~~~~~~~~~~i~~~~~-~~~~piiiv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~ 162 (192)
|+|+++.++++.+..|...+..... ..++|+++|+||+|+..... .+....++. ..+.+++++||+++.||+
T Consensus 243 ViD~s~~~s~e~~~~~~~EL~~~~~~L~~kp~IIV~NKiDL~~~~~~~~~~~~~~~~-----~~~~~i~~iSAktg~GI~ 317 (335)
T PRK12299 243 LVDIEAVDPVEDYKTIRNELEKYSPELADKPRILVLNKIDLLDEEEEREKRAALELA-----ALGGPVFLISAVTGEGLD 317 (335)
T ss_pred EEcCCCCCCHHHHHHHHHHHHHhhhhcccCCeEEEEECcccCCchhHHHHHHHHHHH-----hcCCCEEEEEcCCCCCHH
Confidence 9999988889998888888876532 24789999999999975322 122333322 334789999999999999
Q ss_pred HHHHHHHHHHHhcc
Q 029517 163 ESVEWLVEVMERSK 176 (192)
Q Consensus 163 e~~~~i~~~i~~~~ 176 (192)
+++++|.+.+.+.+
T Consensus 318 eL~~~L~~~l~~~~ 331 (335)
T PRK12299 318 ELLRALWELLEEAR 331 (335)
T ss_pred HHHHHHHHHHHhhh
Confidence 99999998876543
No 134
>KOG0074 consensus GTP-binding ADP-ribosylation factor-like protein ARL3 [General function prediction only]
Probab=99.82 E-value=8.6e-20 Score=123.97 Aligned_cols=146 Identities=36% Similarity=0.635 Sum_probs=130.3
Q ss_pred HHHHHHhhhhccCCCCCCCCCCCCcceEEEEEEecC-EEEEEEeCCCCcccHHHHHHhhhcCCEEEEEEeCCCcccHHHH
Q 029517 20 TLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSN-SKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDS 98 (192)
Q Consensus 20 ~l~~~~~~~~~~~~~~~~~~~~~T~g~~~~~~~~~~-~~~~i~D~~G~~~~~~~~~~~~~~~d~ii~v~D~~~~~s~~~~ 98 (192)
|++.++++ .-+....||.|.+...+...+ +++.+||++|+...+..|..|+.+.|++|+|+|++|...|+++
T Consensus 32 T~LKqL~s-------ED~~hltpT~GFn~k~v~~~g~f~LnvwDiGGqr~IRpyWsNYyenvd~lIyVIDS~D~krfeE~ 104 (185)
T KOG0074|consen 32 TFLKQLKS-------EDPRHLTPTNGFNTKKVEYDGTFHLNVWDIGGQRGIRPYWSNYYENVDGLIYVIDSTDEKRFEEI 104 (185)
T ss_pred hHHHHHcc-------CChhhccccCCcceEEEeecCcEEEEEEecCCccccchhhhhhhhccceEEEEEeCCchHhHHHH
Confidence 77888884 445567999999999988865 8999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhCCCCCCCcEEEEEeCCCCCCCCCHHHHHhHcCccccCCcceEEEEeeecCCCCHHHHHHHHHHHH
Q 029517 99 KTALEKVLRNEDLQGAPLLILANKQDLPDAVSADELARYLDLKKLDERVCMFEAVSGYDGFGIKESVEWLVEVM 172 (192)
Q Consensus 99 ~~~~~~i~~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~e~~~~i~~~i 172 (192)
.+.+-.+.+.......|+.+..||.|+..+...+++...+.+..+..+.+++.+|||..+.|+.+-.+|+....
T Consensus 105 ~~el~ELleeeKl~~vpvlIfankQdlltaa~~eeia~klnl~~lrdRswhIq~csals~eg~~dg~~wv~sn~ 178 (185)
T KOG0074|consen 105 SEELVELLEEEKLAEVPVLIFANKQDLLTAAKVEEIALKLNLAGLRDRSWHIQECSALSLEGSTDGSDWVQSNP 178 (185)
T ss_pred HHHHHHHhhhhhhhccceeehhhhhHHHhhcchHHHHHhcchhhhhhceEEeeeCccccccCccCcchhhhcCC
Confidence 99888888876677899999999999998888889988888777778899999999999999999999986543
No 135
>cd04171 SelB SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo
Probab=99.82 E-value=2.7e-19 Score=128.26 Aligned_cols=144 Identities=21% Similarity=0.135 Sum_probs=94.1
Q ss_pred ccccHHHHHHHHhhhhccCCCCCCCCC--CCCcceEEEEEEec-CEEEEEEeCCCCcccHHHHHHhhhcCCEEEEEEeCC
Q 029517 14 TKTEFHTLLEKLKSVYSNVEGLPPDRI--VPTVGLNIGRIEVS-NSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAA 90 (192)
Q Consensus 14 kst~~~~l~~~~~~~~~~~~~~~~~~~--~~T~g~~~~~~~~~-~~~~~i~D~~G~~~~~~~~~~~~~~~d~ii~v~D~~ 90 (192)
|||++|+|.+... +.+...+ .+|++..+..+... ...+.+|||||++++......+++++|++++|+|++
T Consensus 13 Kssl~~~l~~~~~-------~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~DtpG~~~~~~~~~~~~~~ad~ii~V~d~~ 85 (164)
T cd04171 13 KTTLIKALTGIET-------DRLPEEKKRGITIDLGFAYLDLPSGKRLGFIDVPGHEKFIKNMLAGAGGIDLVLLVVAAD 85 (164)
T ss_pred HHHHHHHHhCccc-------ccchhhhccCceEEeeeEEEEecCCcEEEEEECCChHHHHHHHHhhhhcCCEEEEEEECC
Confidence 7888888875422 2222222 33555555555544 678999999999998777777889999999999998
Q ss_pred CcccHHHHHHHHHHHHhCCCCCCCcEEEEEeCCCCCCCCC----HHHHHhHcCccccCCcceEEEEeeecCCCCHHHHHH
Q 029517 91 CPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAVS----ADELARYLDLKKLDERVCMFEAVSGYDGFGIKESVE 166 (192)
Q Consensus 91 ~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~~~~----~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~e~~~ 166 (192)
+... ......+..+... ...|+++++||+|+..... .+++.+.+.. ....+.+++++||++|.|++++++
T Consensus 86 ~~~~-~~~~~~~~~~~~~---~~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~Sa~~~~~v~~l~~ 159 (164)
T cd04171 86 EGIM-PQTREHLEILELL---GIKRGLVVLTKADLVDEDWLELVEEEIRELLAG--TFLADAPIFPVSAVTGEGIEELKE 159 (164)
T ss_pred CCcc-HhHHHHHHHHHHh---CCCcEEEEEECccccCHHHHHHHHHHHHHHHHh--cCcCCCcEEEEeCCCCcCHHHHHH
Confidence 6321 1122222222212 2249999999999975321 2333344431 001367899999999999999999
Q ss_pred HHHH
Q 029517 167 WLVE 170 (192)
Q Consensus 167 ~i~~ 170 (192)
++..
T Consensus 160 ~l~~ 163 (164)
T cd04171 160 YLDE 163 (164)
T ss_pred HHhh
Confidence 8753
No 136
>cd04102 RabL3 RabL3 (Rab-like3) subfamily. RabL3s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL3 lacks a prenylation site at the C-terminus. The specific function of RabL3 remains unknown.
Probab=99.81 E-value=9.1e-19 Score=130.02 Aligned_cols=94 Identities=19% Similarity=0.287 Sum_probs=79.2
Q ss_pred CCCCCCCCCCcceEEEE--EE-------ecCEEEEEEeCCCCcccHHHHHHhhhcCCEEEEEEeCCCcccHHHHHHHHHH
Q 029517 34 GLPPDRIVPTVGLNIGR--IE-------VSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEK 104 (192)
Q Consensus 34 ~~~~~~~~~T~g~~~~~--~~-------~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ii~v~D~~~~~s~~~~~~~~~~ 104 (192)
+.|.+.+.||+|.++.. +. ...+.+++|||+|+++|..++..++++++++|+|||+++..+|+.+..|+..
T Consensus 23 ~~f~~~~~~Tig~~~~~k~~~~~~~~~~~~~~~l~IwDtaG~e~~~~l~~~~yr~ad~iIlVyDvtn~~Sf~~l~~W~~e 102 (202)
T cd04102 23 NQVLGRPSWTVGCSVDVKHHTYKEGTPEEKTFFVELWDVGGSESVKSTRAVFYNQVNGIILVHDLTNRKSSQNLQRWSLE 102 (202)
T ss_pred CCCCCCCCcceeeeEEEEEEEEcCCCCCCcEEEEEEEecCCchhHHHHHHHHhCcCCEEEEEEECcChHHHHHHHHHHHH
Confidence 56777889999976642 22 2357899999999999999999999999999999999999999999999999
Q ss_pred HHhCC------------------CCCCCcEEEEEeCCCCCC
Q 029517 105 VLRNE------------------DLQGAPLLILANKQDLPD 127 (192)
Q Consensus 105 i~~~~------------------~~~~~piiiv~nK~Dl~~ 127 (192)
+.... ...++|+++||||.|+.+
T Consensus 103 i~~~~~~~~~~~~~~~~~~~~~~~~~~~PiilVGnK~Dl~~ 143 (202)
T cd04102 103 ALNKDTFPTGLLVTNGDYDSEQFGGNQIPLLVIGTKLDQIP 143 (202)
T ss_pred HHHhhccccccccccccccccccCCCCceEEEEEECccchh
Confidence 97631 124689999999999865
No 137
>KOG0393 consensus Ras-related small GTPase, Rho type [General function prediction only]
Probab=99.80 E-value=2.5e-19 Score=130.20 Aligned_cols=141 Identities=18% Similarity=0.311 Sum_probs=116.8
Q ss_pred cCCCCCCCCCCCCcceEEEE---EE-ecCEEEEEEeCCCCcccHHHHHHhhhcCCEEEEEEeCCCcccHHHH-HHHHHHH
Q 029517 31 NVEGLPPDRIVPTVGLNIGR---IE-VSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDS-KTALEKV 105 (192)
Q Consensus 31 ~~~~~~~~~~~~T~g~~~~~---~~-~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ii~v~D~~~~~s~~~~-~~~~~~i 105 (192)
...+.|++.|.||.--++.. +. +..+.+.+|||+||++|...+...+..+|+++++|++.++.||+++ .+|+-++
T Consensus 24 ~t~~~fp~~yvPTVFdnys~~v~V~dg~~v~L~LwDTAGqedYDrlRplsY~~tdvfl~cfsv~~p~S~~nv~~kW~pEi 103 (198)
T KOG0393|consen 24 YTTNAFPEEYVPTVFDNYSANVTVDDGKPVELGLWDTAGQEDYDRLRPLSYPQTDVFLLCFSVVSPESFENVKSKWIPEI 103 (198)
T ss_pred eccCcCcccccCeEEccceEEEEecCCCEEEEeeeecCCCcccccccccCCCCCCEEEEEEEcCChhhHHHHHhhhhHHH
Confidence 44478999999999977763 53 6678999999999999998887788999999999999999999985 6799988
Q ss_pred HhCCCCCCCcEEEEEeCCCCCC--------------CCCHHHHHhHcCccccCCcceEEEEeeecCCCCHHHHHHHHHHH
Q 029517 106 LRNEDLQGAPLLILANKQDLPD--------------AVSADELARYLDLKKLDERVCMFEAVSGYDGFGIKESVEWLVEV 171 (192)
Q Consensus 106 ~~~~~~~~~piiiv~nK~Dl~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~e~~~~i~~~ 171 (192)
...+ ++.|+++||+|.||.. .+..++....++ ......|+||||++..|++++|+..++.
T Consensus 104 ~~~c--p~vpiiLVGtk~DLr~d~~~~~~l~~~~~~~Vt~~~g~~lA~----~iga~~y~EcSa~tq~~v~~vF~~a~~~ 177 (198)
T KOG0393|consen 104 KHHC--PNVPIILVGTKADLRDDPSTLEKLQRQGLEPVTYEQGLELAK----EIGAVKYLECSALTQKGVKEVFDEAIRA 177 (198)
T ss_pred HhhC--CCCCEEEEeehHHhhhCHHHHHHHHhccCCcccHHHHHHHHH----HhCcceeeeehhhhhCCcHHHHHHHHHH
Confidence 8886 6899999999999963 344455555554 1224789999999999999999999998
Q ss_pred HHhcch
Q 029517 172 MERSKR 177 (192)
Q Consensus 172 i~~~~~ 177 (192)
.....+
T Consensus 178 ~l~~~~ 183 (198)
T KOG0393|consen 178 ALRPPQ 183 (198)
T ss_pred Hhcccc
Confidence 877653
No 138
>TIGR02729 Obg_CgtA Obg family GTPase CgtA. This model describes a univeral, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. This GTPase, related to the nucleolar protein Obg, is designated CgtA in bacteria. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure. Recent work done in Vibrio cholerae shows an essential role in the stringent response, in which RelA-dependent ability to synthesize the alarmone ppGpp is required for deletion of this GTPase to be lethal.
Probab=99.80 E-value=2.2e-18 Score=136.72 Aligned_cols=147 Identities=22% Similarity=0.296 Sum_probs=103.7
Q ss_pred ccccHHHHHHHHhhhhccCCCCCCCCCCCCcceEEEEEEecC-EEEEEEeCCCCcc-------cHHHHHHhhhcCCEEEE
Q 029517 14 TKTEFHTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSN-SKLVFWDLGGQPG-------LRSIWEKYYEEAHAVVF 85 (192)
Q Consensus 14 kst~~~~l~~~~~~~~~~~~~~~~~~~~~T~g~~~~~~~~~~-~~~~i~D~~G~~~-------~~~~~~~~~~~~d~ii~ 85 (192)
|||++|+|.+ ..+++++++.++..|++|. +...+ .++.+||+||... ....+..+++.|+++++
T Consensus 170 KSTLl~~lt~----~~~~va~y~fTT~~p~ig~----v~~~~~~~~~i~D~PGli~~a~~~~gLg~~flrhierad~ll~ 241 (329)
T TIGR02729 170 KSTLISAVSA----AKPKIADYPFTTLVPNLGV----VRVDDGRSFVIADIPGLIEGASEGAGLGHRFLKHIERTRVLLH 241 (329)
T ss_pred HHHHHHHHhc----CCccccCCCCCccCCEEEE----EEeCCceEEEEEeCCCcccCCcccccHHHHHHHHHHhhCEEEE
Confidence 5666666654 3456667766667777665 44444 7899999999631 23344455678999999
Q ss_pred EEeCCCc---ccHHHHHHHHHHHHhCC-CCCCCcEEEEEeCCCCCCCCCHHHHHhHcCccccCCcceEEEEeeecCCCCH
Q 029517 86 VIDAACP---SRFEDSKTALEKVLRNE-DLQGAPLLILANKQDLPDAVSADELARYLDLKKLDERVCMFEAVSGYDGFGI 161 (192)
Q Consensus 86 v~D~~~~---~s~~~~~~~~~~i~~~~-~~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi 161 (192)
|+|+++. ++++.+..|.+.+.... ...++|+++|+||+|+......+++.+.+. ...+.+++++||+++.||
T Consensus 242 VvD~s~~~~~~~~e~l~~l~~EL~~~~~~l~~kp~IIV~NK~DL~~~~~~~~~~~~l~----~~~~~~vi~iSAktg~GI 317 (329)
T TIGR02729 242 LIDISPLDGRDPIEDYEIIRNELKKYSPELAEKPRIVVLNKIDLLDEEELAELLKELK----KALGKPVFPISALTGEGL 317 (329)
T ss_pred EEcCccccccCHHHHHHHHHHHHHHhhhhhccCCEEEEEeCccCCChHHHHHHHHHHH----HHcCCcEEEEEccCCcCH
Confidence 9999976 67777777777766542 224789999999999976433333333322 122468999999999999
Q ss_pred HHHHHHHHHHH
Q 029517 162 KESVEWLVEVM 172 (192)
Q Consensus 162 ~e~~~~i~~~i 172 (192)
++++++|.+.+
T Consensus 318 ~eL~~~I~~~l 328 (329)
T TIGR02729 318 DELLYALAELL 328 (329)
T ss_pred HHHHHHHHHHh
Confidence 99999998754
No 139
>KOG4252 consensus GTP-binding protein [Signal transduction mechanisms]
Probab=99.78 E-value=7.6e-20 Score=129.03 Aligned_cols=138 Identities=21% Similarity=0.355 Sum_probs=122.4
Q ss_pred CCCCCCCCCCcceEEEE----EEecCEEEEEEeCCCCcccHHHHHHhhhcCCEEEEEEeCCCcccHHHHHHHHHHHHhCC
Q 029517 34 GLPPDRIVPTVGLNIGR----IEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNE 109 (192)
Q Consensus 34 ~~~~~~~~~T~g~~~~~----~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ii~v~D~~~~~s~~~~~~~~~~i~~~~ 109 (192)
+-|...|..|||.++.. +....+...+||++|++.|......|++++.+.++||.-+|..||+...+|.+++....
T Consensus 43 gifTkdykktIgvdflerqi~v~~Edvr~mlWdtagqeEfDaItkAyyrgaqa~vLVFSTTDr~SFea~~~w~~kv~~e~ 122 (246)
T KOG4252|consen 43 GIFTKDYKKTIGVDFLERQIKVLIEDVRSMLWDTAGQEEFDAITKAYYRGAQASVLVFSTTDRYSFEATLEWYNKVQKET 122 (246)
T ss_pred cccccccccccchhhhhHHHHhhHHHHHHHHHHhccchhHHHHHHHHhccccceEEEEecccHHHHHHHHHHHHHHHHHh
Confidence 77889999999999874 44567889999999999999999999999999999999999999999999999998765
Q ss_pred CCCCCcEEEEEeCCCCCC--CCCHHHHHhHcCccccCCcceEEEEeeecCCCCHHHHHHHHHHHHHhcchh
Q 029517 110 DLQGAPLLILANKQDLPD--AVSADELARYLDLKKLDERVCMFEAVSGYDGFGIKESVEWLVEVMERSKRT 178 (192)
Q Consensus 110 ~~~~~piiiv~nK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~e~~~~i~~~i~~~~~~ 178 (192)
.++|.++|-||+|+.+ ++..+++...++ .....++.+|++...||..+|..|.+.+.....+
T Consensus 123 --~~IPtV~vqNKIDlveds~~~~~evE~lak-----~l~~RlyRtSvked~NV~~vF~YLaeK~~q~~kq 186 (246)
T KOG4252|consen 123 --ERIPTVFVQNKIDLVEDSQMDKGEVEGLAK-----KLHKRLYRTSVKEDFNVMHVFAYLAEKLTQQKKQ 186 (246)
T ss_pred --ccCCeEEeeccchhhHhhhcchHHHHHHHH-----HhhhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHH
Confidence 5899999999999987 677777777776 5578899999999999999999999988766544
No 140
>cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1. Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to
Probab=99.78 E-value=3.7e-18 Score=123.76 Aligned_cols=145 Identities=21% Similarity=0.229 Sum_probs=98.5
Q ss_pred ccccHHHHHHHHhhhhccCCCCCCCCCCCCcceEEEEEEec-CEEEEEEeCCCCccc-------HHHHHHhhhcCCEEEE
Q 029517 14 TKTEFHTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVS-NSKLVFWDLGGQPGL-------RSIWEKYYEEAHAVVF 85 (192)
Q Consensus 14 kst~~~~l~~~~~~~~~~~~~~~~~~~~~T~g~~~~~~~~~-~~~~~i~D~~G~~~~-------~~~~~~~~~~~d~ii~ 85 (192)
|||++|+|.+... .+.+. ..+|.+.....+... ...+.+|||||.... ......+++++|++++
T Consensus 9 KStll~~l~~~~~----~~~~~----~~~t~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~d~ii~ 80 (176)
T cd01881 9 KSTLLNALTNAKP----KVANY----PFTTLEPNLGVVEVPDGARIQVADIPGLIEGASEGRGLGNQFLAHIRRADAILH 80 (176)
T ss_pred HHHHHHHHhcCCc----cccCC----CceeecCcceEEEcCCCCeEEEEeccccchhhhcCCCccHHHHHHHhccCEEEE
Confidence 7888888876532 11122 233344444455556 788999999996321 1123345788999999
Q ss_pred EEeCCCc------ccHHHHHHHHHHHHhCCC------CCCCcEEEEEeCCCCCCCCCHHHH--HhHcCccccCCcceEEE
Q 029517 86 VIDAACP------SRFEDSKTALEKVLRNED------LQGAPLLILANKQDLPDAVSADEL--ARYLDLKKLDERVCMFE 151 (192)
Q Consensus 86 v~D~~~~------~s~~~~~~~~~~i~~~~~------~~~~piiiv~nK~Dl~~~~~~~~~--~~~~~~~~~~~~~~~~~ 151 (192)
|+|+++. .++++...|...+..... ..++|+++|+||+|+.......+. ..... ..+.+++
T Consensus 81 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~ 155 (176)
T cd01881 81 VVDASEDDDIGGVDPLEDYEILNAELKLYDLETILGLLTAKPVIYVLNKIDLDDAEELEEELVRELAL-----EEGAEVV 155 (176)
T ss_pred EEeccCCccccccCHHHHHHHHHHHHHHhhhhhHHHHHhhCCeEEEEEchhcCchhHHHHHHHHHHhc-----CCCCCEE
Confidence 9999987 567777777777765432 147899999999999753332222 11221 3467799
Q ss_pred EeeecCCCCHHHHHHHHHHH
Q 029517 152 AVSGYDGFGIKESVEWLVEV 171 (192)
Q Consensus 152 ~~Sa~~~~gi~e~~~~i~~~ 171 (192)
++||+++.|++++++++.+.
T Consensus 156 ~~Sa~~~~gl~~l~~~l~~~ 175 (176)
T cd01881 156 PISAKTEEGLDELIRAIYEL 175 (176)
T ss_pred EEehhhhcCHHHHHHHHHhh
Confidence 99999999999999998764
No 141
>cd01879 FeoB Ferrous iron transport protein B (FeoB) subfamily. E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent.
Probab=99.77 E-value=5.2e-18 Score=120.88 Aligned_cols=140 Identities=21% Similarity=0.219 Sum_probs=93.8
Q ss_pred ccccHHHHHHHHhhhhccCCCCCCCCCCCCcceEEEEEEecCEEEEEEeCCCCcccHH------HHHHhhh--cCCEEEE
Q 029517 14 TKTEFHTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPGLRS------IWEKYYE--EAHAVVF 85 (192)
Q Consensus 14 kst~~~~l~~~~~~~~~~~~~~~~~~~~~T~g~~~~~~~~~~~~~~i~D~~G~~~~~~------~~~~~~~--~~d~ii~ 85 (192)
|||++|++.+.... + ......|.......+...+..+.+|||||++.+.. .+..++. ++|++++
T Consensus 9 Kssl~~~~~~~~~~----~----~~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~vi~ 80 (158)
T cd01879 9 KTTLFNALTGARQK----V----GNWPGVTVEKKEGRFKLGGKEIEIVDLPGTYSLSPYSEDEKVARDFLLGEKPDLIVN 80 (158)
T ss_pred HHHHHHHHhcCccc----c----cCCCCcccccceEEEeeCCeEEEEEECCCccccCCCChhHHHHHHHhcCCCCcEEEE
Confidence 78888888654211 1 11123345554555666677899999999876543 3455564 8999999
Q ss_pred EEeCCCcccHHHHHHHHHHHHhCCCCCCCcEEEEEeCCCCCCCCCH-HHHHhHcCccccCCcceEEEEeeecCCCCHHHH
Q 029517 86 VIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAVSA-DELARYLDLKKLDERVCMFEAVSGYDGFGIKES 164 (192)
Q Consensus 86 v~D~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~~~~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~e~ 164 (192)
|+|+++.+... .+...+.. .++|+++++||+|+...... .+...+.. ..+.+++++||++|.|++++
T Consensus 81 v~d~~~~~~~~---~~~~~~~~----~~~~~iiv~NK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~iSa~~~~~~~~l 148 (158)
T cd01879 81 VVDATNLERNL---YLTLQLLE----LGLPVVVALNMIDEAEKRGIKIDLDKLSE-----LLGVPVVPTSARKGEGIDEL 148 (158)
T ss_pred EeeCCcchhHH---HHHHHHHH----cCCCEEEEEehhhhcccccchhhHHHHHH-----hhCCCeEEEEccCCCCHHHH
Confidence 99998754332 34433333 36899999999999653211 22222222 23578999999999999999
Q ss_pred HHHHHHHHH
Q 029517 165 VEWLVEVME 173 (192)
Q Consensus 165 ~~~i~~~i~ 173 (192)
++++.+.++
T Consensus 149 ~~~l~~~~~ 157 (158)
T cd01879 149 KDAIAELAE 157 (158)
T ss_pred HHHHHHHhc
Confidence 999987643
No 142
>cd01878 HflX HflX subfamily. A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.
Probab=99.77 E-value=1.1e-17 Score=124.52 Aligned_cols=141 Identities=22% Similarity=0.253 Sum_probs=94.6
Q ss_pred ccccHHHHHHHHhhhhccCCCCCCCCCCCCcceEEEEEEecC-EEEEEEeCCCCcc---------cHHHHHHhhhcCCEE
Q 029517 14 TKTEFHTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSN-SKLVFWDLGGQPG---------LRSIWEKYYEEAHAV 83 (192)
Q Consensus 14 kst~~~~l~~~~~~~~~~~~~~~~~~~~~T~g~~~~~~~~~~-~~~~i~D~~G~~~---------~~~~~~~~~~~~d~i 83 (192)
|||++|+|++.-.. ....+.+|.......+...+ ..+.+|||||... +...+ ..+..+|++
T Consensus 54 KStLl~~l~~~~~~--------~~~~~~~t~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~-~~~~~~d~i 124 (204)
T cd01878 54 KSTLFNALTGADVY--------AEDQLFATLDPTTRRLRLPDGREVLLTDTVGFIRDLPHQLVEAFRSTL-EEVAEADLL 124 (204)
T ss_pred HHHHHHHHhcchhc--------cCCccceeccceeEEEEecCCceEEEeCCCccccCCCHHHHHHHHHHH-HHHhcCCeE
Confidence 67777776654211 11233455555555554433 4899999999732 22222 236789999
Q ss_pred EEEEeCCCcccHHHHHHHHHHHHhCCCCCCCcEEEEEeCCCCCCCCCHHHHHhHcCccccCCcceEEEEeeecCCCCHHH
Q 029517 84 VFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAVSADELARYLDLKKLDERVCMFEAVSGYDGFGIKE 163 (192)
Q Consensus 84 i~v~D~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~e 163 (192)
++|+|++++.++.....|...+.... ..++|+++|+||+|+....... .... ....+++++||++|.|+++
T Consensus 125 i~v~D~~~~~~~~~~~~~~~~l~~~~-~~~~~viiV~NK~Dl~~~~~~~---~~~~-----~~~~~~~~~Sa~~~~gi~~ 195 (204)
T cd01878 125 LHVVDASDPDYEEQIETVEKVLKELG-AEDIPMILVLNKIDLLDDEELE---ERLE-----AGRPDAVFISAKTGEGLDE 195 (204)
T ss_pred EEEEECCCCChhhHHHHHHHHHHHcC-cCCCCEEEEEEccccCChHHHH---HHhh-----cCCCceEEEEcCCCCCHHH
Confidence 99999998888877666665554432 2468999999999987532221 2222 3456899999999999999
Q ss_pred HHHHHHHHH
Q 029517 164 SVEWLVEVM 172 (192)
Q Consensus 164 ~~~~i~~~i 172 (192)
++++|.+.+
T Consensus 196 l~~~L~~~~ 204 (204)
T cd01878 196 LLEAIEELL 204 (204)
T ss_pred HHHHHHhhC
Confidence 999998753
No 143
>cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily. IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s.
Probab=99.77 E-value=1.5e-17 Score=119.74 Aligned_cols=146 Identities=15% Similarity=0.128 Sum_probs=94.5
Q ss_pred ccccHHHHHHHHhhhhccCCCCCCCCCCCCcceEEEEEEe---cCEEEEEEeCCCCcccHHHHHHhhhcCCEEEEEEeCC
Q 029517 14 TKTEFHTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEV---SNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAA 90 (192)
Q Consensus 14 kst~~~~l~~~~~~~~~~~~~~~~~~~~~T~g~~~~~~~~---~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ii~v~D~~ 90 (192)
|||++|+|.+.-.. .. ....+|.......+.. .+..+.+|||||++.|...+..++..+|++++|+|++
T Consensus 13 Ktsli~~l~~~~~~------~~--~~~~~t~~~~~~~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~d~il~v~d~~ 84 (168)
T cd01887 13 KTTLLDKIRKTNVA------AG--EAGGITQHIGAFEVPAEVLKIPGITFIDTPGHEAFTNMRARGASLTDIAILVVAAD 84 (168)
T ss_pred HHHHHHHHHhcccc------cc--cCCCeEEeeccEEEecccCCcceEEEEeCCCcHHHHHHHHHHHhhcCEEEEEEECC
Confidence 78888888643211 11 1112333333344443 3678999999999999988888999999999999998
Q ss_pred CcccHHHHHHHHHHHHhCCCCCCCcEEEEEeCCCCCCCCCHHHHHhHcC---ccc--cCCcceEEEEeeecCCCCHHHHH
Q 029517 91 CPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAVSADELARYLD---LKK--LDERVCMFEAVSGYDGFGIKESV 165 (192)
Q Consensus 91 ~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~~---~~~--~~~~~~~~~~~Sa~~~~gi~e~~ 165 (192)
+....+. ...+..+.. .++|+++|+||+|+.... .+.+...+. ... .....++++++||++|.|+++++
T Consensus 85 ~~~~~~~-~~~~~~~~~----~~~p~ivv~NK~Dl~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~ 158 (168)
T cd01887 85 DGVMPQT-IEAIKLAKA----ANVPFIVALNKIDKPNAN-PERVKNELSELGLQGEDEWGGDVQIVPTSAKTGEGIDDLL 158 (168)
T ss_pred CCccHHH-HHHHHHHHH----cCCCEEEEEEceeccccc-HHHHHHHHHHhhccccccccCcCcEEEeecccCCCHHHHH
Confidence 7542221 122222222 468999999999987532 122111111 000 01235789999999999999999
Q ss_pred HHHHHHHH
Q 029517 166 EWLVEVME 173 (192)
Q Consensus 166 ~~i~~~i~ 173 (192)
++|.+...
T Consensus 159 ~~l~~~~~ 166 (168)
T cd01887 159 EAILLLAE 166 (168)
T ss_pred HHHHHhhh
Confidence 99987654
No 144
>cd01894 EngA1 EngA1 subfamily. This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.76 E-value=1.4e-17 Score=118.30 Aligned_cols=138 Identities=22% Similarity=0.224 Sum_probs=90.7
Q ss_pred ccccHHHHHHHHhhhhccCCCCCCCCCCCCcceEEEEEEecCEEEEEEeCCCCcccHH--------HHHHhhhcCCEEEE
Q 029517 14 TKTEFHTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPGLRS--------IWEKYYEEAHAVVF 85 (192)
Q Consensus 14 kst~~~~l~~~~~~~~~~~~~~~~~~~~~T~g~~~~~~~~~~~~~~i~D~~G~~~~~~--------~~~~~~~~~d~ii~ 85 (192)
|||++|+|++........ ....|...........+..+.+|||||+..+.. .+..+++.+|++++
T Consensus 10 Kssl~~~l~~~~~~~~~~-------~~~~t~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~~d~ii~ 82 (157)
T cd01894 10 KSTLFNRLTGRRDAIVED-------TPGVTRDRIYGEAEWGGREFILIDTGGIEPDDEGISKEIREQAELAIEEADVILF 82 (157)
T ss_pred HHHHHHHHhCCcEEeecC-------CCCceeCceeEEEEECCeEEEEEECCCCCCchhHHHHHHHHHHHHHHHhCCEEEE
Confidence 788888887653221111 112233333445556678899999999887543 34456788999999
Q ss_pred EEeCCCcccHHHHHHHHHHHHhCCCCCCCcEEEEEeCCCCCCCCCHHHHHhHcCccccCCcce-EEEEeeecCCCCHHHH
Q 029517 86 VIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAVSADELARYLDLKKLDERVC-MFEAVSGYDGFGIKES 164 (192)
Q Consensus 86 v~D~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~gi~e~ 164 (192)
|+|+.+..+... .++..+... .+.|+++++||+|+...... .+.+. ..+. +++++||++|.|++++
T Consensus 83 v~d~~~~~~~~~--~~~~~~~~~---~~~piiiv~nK~D~~~~~~~---~~~~~-----~~~~~~~~~~Sa~~~~gv~~l 149 (157)
T cd01894 83 VVDGREGLTPAD--EEIAKYLRK---SKKPVILVVNKVDNIKEEDE---AAEFY-----SLGFGEPIPISAEHGRGIGDL 149 (157)
T ss_pred EEeccccCCccH--HHHHHHHHh---cCCCEEEEEECcccCChHHH---HHHHH-----hcCCCCeEEEecccCCCHHHH
Confidence 999986544433 223333332 35999999999999763221 11221 1122 6899999999999999
Q ss_pred HHHHHHH
Q 029517 165 VEWLVEV 171 (192)
Q Consensus 165 ~~~i~~~ 171 (192)
+++|.+.
T Consensus 150 ~~~l~~~ 156 (157)
T cd01894 150 LDAILEL 156 (157)
T ss_pred HHHHHhh
Confidence 9999875
No 145
>PRK12296 obgE GTPase CgtA; Reviewed
Probab=99.76 E-value=7.8e-18 Score=138.82 Aligned_cols=150 Identities=22% Similarity=0.263 Sum_probs=99.8
Q ss_pred ccccHHHHHHHHhhhhccCCCCCCCCCCCCcceEEEEEEecCEEEEEEeCCCCcc-------cHHHHHHhhhcCCEEEEE
Q 029517 14 TKTEFHTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPG-------LRSIWEKYYEEAHAVVFV 86 (192)
Q Consensus 14 kst~~~~l~~~~~~~~~~~~~~~~~~~~~T~g~~~~~~~~~~~~~~i~D~~G~~~-------~~~~~~~~~~~~d~ii~v 86 (192)
|||++|+|.+. .+++++++.+ |...+...+......+.+||+||... .......+++.|+++|+|
T Consensus 172 KSTLln~Ls~a----kpkIadypfT----Tl~P~lGvv~~~~~~f~laDtPGliegas~g~gLg~~fLrhieradvLv~V 243 (500)
T PRK12296 172 KSSLISALSAA----KPKIADYPFT----TLVPNLGVVQAGDTRFTVADVPGLIPGASEGKGLGLDFLRHIERCAVLVHV 243 (500)
T ss_pred HHHHHHHHhcC----CccccccCcc----cccceEEEEEECCeEEEEEECCCCccccchhhHHHHHHHHHHHhcCEEEEE
Confidence 67777777653 3445555544 44445556777788999999999521 112234467889999999
Q ss_pred EeCCCc----ccHHHHHHHHHHHHhCC----------CCCCCcEEEEEeCCCCCCCCCH-HHHHhHcCccccCCcceEEE
Q 029517 87 IDAACP----SRFEDSKTALEKVLRNE----------DLQGAPLLILANKQDLPDAVSA-DELARYLDLKKLDERVCMFE 151 (192)
Q Consensus 87 ~D~~~~----~s~~~~~~~~~~i~~~~----------~~~~~piiiv~nK~Dl~~~~~~-~~~~~~~~~~~~~~~~~~~~ 151 (192)
+|+++. +.++.+..+...+..+. ....+|+++|+||+|+++.... +.+.+.+. ..+++++
T Consensus 244 VD~s~~e~~rdp~~d~~~i~~EL~~y~~~l~~~~~~~~l~~kP~IVVlNKiDL~da~el~e~l~~~l~-----~~g~~Vf 318 (500)
T PRK12296 244 VDCATLEPGRDPLSDIDALEAELAAYAPALDGDLGLGDLAERPRLVVLNKIDVPDARELAEFVRPELE-----ARGWPVF 318 (500)
T ss_pred ECCcccccccCchhhHHHHHHHHHHhhhcccccchhhhhcCCCEEEEEECccchhhHHHHHHHHHHHH-----HcCCeEE
Confidence 999753 34444444444443332 2347899999999999753222 22222222 3367899
Q ss_pred EeeecCCCCHHHHHHHHHHHHHhcc
Q 029517 152 AVSGYDGFGIKESVEWLVEVMERSK 176 (192)
Q Consensus 152 ~~Sa~~~~gi~e~~~~i~~~i~~~~ 176 (192)
++||+++.|+++++++|.+.+...+
T Consensus 319 ~ISA~tgeGLdEL~~~L~ell~~~r 343 (500)
T PRK12296 319 EVSAASREGLRELSFALAELVEEAR 343 (500)
T ss_pred EEECCCCCCHHHHHHHHHHHHHhhh
Confidence 9999999999999999999887654
No 146
>cd00882 Ras_like_GTPase Ras-like GTPase superfamily. The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulate initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Memb
Probab=99.76 E-value=1.9e-17 Score=115.95 Aligned_cols=142 Identities=27% Similarity=0.388 Sum_probs=103.0
Q ss_pred ccccHHHHHHHHhhhhccCCCCCCCCCCCCcceEEEEEEec----CEEEEEEeCCCCcccHHHHHHhhhcCCEEEEEEeC
Q 029517 14 TKTEFHTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVS----NSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDA 89 (192)
Q Consensus 14 kst~~~~l~~~~~~~~~~~~~~~~~~~~~T~g~~~~~~~~~----~~~~~i~D~~G~~~~~~~~~~~~~~~d~ii~v~D~ 89 (192)
|||++|+|.+.... ...+.+|. .+....... ...+.+||+||+..+...+..+++.+|++++|+|+
T Consensus 9 KStl~~~l~~~~~~---------~~~~~~t~-~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~ 78 (157)
T cd00882 9 KTSLLNRLLGGEFV---------PEEYETTI-IDFYSKTIEVDGKKVKLQIWDTAGQERFRSLRRLYYRGADGIILVYDV 78 (157)
T ss_pred HHHHHHHHHhCCcC---------Ccccccch-hheeeEEEEECCEEEEEEEEecCChHHHHhHHHHHhcCCCEEEEEEEC
Confidence 77777777655432 23344554 445544332 67899999999998888888889999999999999
Q ss_pred CCcccHHHHHHHHHHHHhCCCCCCCcEEEEEeCCCCCCCCCHHHH--HhHcCccccCCcceEEEEeeecCCCCHHHHHHH
Q 029517 90 ACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAVSADEL--ARYLDLKKLDERVCMFEAVSGYDGFGIKESVEW 167 (192)
Q Consensus 90 ~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~~~~~~~~--~~~~~~~~~~~~~~~~~~~Sa~~~~gi~e~~~~ 167 (192)
+++.+......|.............|+++++||+|+......+.. ..... .....+++++|++.+.|+++++++
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~nk~D~~~~~~~~~~~~~~~~~----~~~~~~~~~~s~~~~~~i~~~~~~ 154 (157)
T cd00882 79 TDRESFENVKEWLLLILINKEGENIPIILVGNKIDLPEERVVSEEELAEQLA----KELGVPYFETSAKTGENVEELFEE 154 (157)
T ss_pred cCHHHHHHHHHHHHHHHHhhccCCCcEEEEEeccccccccchHHHHHHHHHH----hhcCCcEEEEecCCCCChHHHHHH
Confidence 998888888777333333333367999999999999764333332 11111 144688999999999999999999
Q ss_pred HH
Q 029517 168 LV 169 (192)
Q Consensus 168 i~ 169 (192)
|.
T Consensus 155 l~ 156 (157)
T cd00882 155 LA 156 (157)
T ss_pred Hh
Confidence 86
No 147
>PRK12297 obgE GTPase CgtA; Reviewed
Probab=99.76 E-value=1.6e-17 Score=135.23 Aligned_cols=148 Identities=22% Similarity=0.324 Sum_probs=101.7
Q ss_pred ccccHHHHHHHHhhhhccCCCCCCCCCCCCcceEEEEEEec-CEEEEEEeCCCCcc-------cHHHHHHhhhcCCEEEE
Q 029517 14 TKTEFHTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVS-NSKLVFWDLGGQPG-------LRSIWEKYYEEAHAVVF 85 (192)
Q Consensus 14 kst~~~~l~~~~~~~~~~~~~~~~~~~~~T~g~~~~~~~~~-~~~~~i~D~~G~~~-------~~~~~~~~~~~~d~ii~ 85 (192)
|||++|+|.++ .+++++++.++..|+.| .+... ...+.+||+||... ....+..+++.|+++++
T Consensus 171 KSTLLn~Lt~a----k~kIa~ypfTTl~PnlG----~v~~~~~~~~~laD~PGliega~~~~gLg~~fLrhier~~llI~ 242 (424)
T PRK12297 171 KSTLLSVVSNA----KPKIANYHFTTLVPNLG----VVETDDGRSFVMADIPGLIEGASEGVGLGHQFLRHIERTRVIVH 242 (424)
T ss_pred HHHHHHHHHcC----CCccccCCcceeceEEE----EEEEeCCceEEEEECCCCcccccccchHHHHHHHHHhhCCEEEE
Confidence 66776666543 35566666555555544 45544 67899999999531 12233445677999999
Q ss_pred EEeCCCc---ccHHHHHHHHHHHHhCCC-CCCCcEEEEEeCCCCCCCCCHHHHHhHcCccccCCcceEEEEeeecCCCCH
Q 029517 86 VIDAACP---SRFEDSKTALEKVLRNED-LQGAPLLILANKQDLPDAVSADELARYLDLKKLDERVCMFEAVSGYDGFGI 161 (192)
Q Consensus 86 v~D~~~~---~s~~~~~~~~~~i~~~~~-~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi 161 (192)
|+|+++. +.++....|...+..... ..++|+++|+||+|+... .+.+.++.+ ..+.+++++||+++.|+
T Consensus 243 VID~s~~~~~dp~e~~~~i~~EL~~y~~~L~~kP~IVV~NK~DL~~~--~e~l~~l~~-----~l~~~i~~iSA~tgeGI 315 (424)
T PRK12297 243 VIDMSGSEGRDPIEDYEKINKELKLYNPRLLERPQIVVANKMDLPEA--EENLEEFKE-----KLGPKVFPISALTGQGL 315 (424)
T ss_pred EEeCCccccCChHHHHHHHHHHHhhhchhccCCcEEEEEeCCCCcCC--HHHHHHHHH-----HhCCcEEEEeCCCCCCH
Confidence 9999864 566766667666665422 247899999999998532 233333333 12267999999999999
Q ss_pred HHHHHHHHHHHHhcc
Q 029517 162 KESVEWLVEVMERSK 176 (192)
Q Consensus 162 ~e~~~~i~~~i~~~~ 176 (192)
++++++|.+.+.+..
T Consensus 316 ~eL~~~L~~~l~~~~ 330 (424)
T PRK12297 316 DELLYAVAELLEETP 330 (424)
T ss_pred HHHHHHHHHHHHhCc
Confidence 999999998887654
No 148
>cd00881 GTP_translation_factor GTP translation factor family. This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function.
Probab=99.76 E-value=5.3e-17 Score=118.89 Aligned_cols=155 Identities=18% Similarity=0.184 Sum_probs=104.4
Q ss_pred ccccHHHHHHHHhhhhccCCCC--------CCCCCCCCcceEEEEEEecCEEEEEEeCCCCcccHHHHHHhhhcCCEEEE
Q 029517 14 TKTEFHTLLEKLKSVYSNVEGL--------PPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVF 85 (192)
Q Consensus 14 kst~~~~l~~~~~~~~~~~~~~--------~~~~~~~T~g~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ii~ 85 (192)
|||++|+|++............ .......|.......+......+.+|||||+..+...+..+++.+|++++
T Consensus 12 KStlln~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~d~~i~ 91 (189)
T cd00881 12 KTTLTERLLYVTGDIERDGTVEETFLDVLKEERERGITIKSGVATFEWPDRRVNFIDTPGHEDFSSEVIRGLSVSDGAIL 91 (189)
T ss_pred HHHHHHHHHHhcCCCCcCCceecccccCCHHHHHcCCCeecceEEEeeCCEEEEEEeCCCcHHHHHHHHHHHHhcCEEEE
Confidence 8999999987754421100000 00011233444444566667899999999999998889999999999999
Q ss_pred EEeCCCcccHHHHHHHHHHHHhCCCCCCCcEEEEEeCCCCCCCCC----HHHHHhHcCcccc---------CCcceEEEE
Q 029517 86 VIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAVS----ADELARYLDLKKL---------DERVCMFEA 152 (192)
Q Consensus 86 v~D~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~~~~----~~~~~~~~~~~~~---------~~~~~~~~~ 152 (192)
|+|++.+.+... ..++..... .+.|+++++||+|+..... .+++.+.++.... .....++++
T Consensus 92 v~d~~~~~~~~~-~~~~~~~~~----~~~~i~iv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 166 (189)
T cd00881 92 VVDANEGVQPQT-REHLRIARE----GGLPIIVAINKIDRVGEEDLEEVLREIKELLGLIGFISTKEEGTRNGLLVPIVP 166 (189)
T ss_pred EEECCCCCcHHH-HHHHHHHHH----CCCCeEEEEECCCCcchhcHHHHHHHHHHHHccccccchhhhhcccCCcceEEE
Confidence 999987654432 233333332 4799999999999975222 2334444432111 124688999
Q ss_pred eeecCCCCHHHHHHHHHHHHH
Q 029517 153 VSGYDGFGIKESVEWLVEVME 173 (192)
Q Consensus 153 ~Sa~~~~gi~e~~~~i~~~i~ 173 (192)
+||++|.|++++++++.+.+.
T Consensus 167 ~Sa~~g~gi~~l~~~l~~~l~ 187 (189)
T cd00881 167 GSALTGIGVEELLEAIVEHLP 187 (189)
T ss_pred EecccCcCHHHHHHHHHhhCC
Confidence 999999999999999998763
No 149
>PLN00023 GTP-binding protein; Provisional
Probab=99.76 E-value=9.9e-18 Score=130.95 Aligned_cols=114 Identities=18% Similarity=0.336 Sum_probs=91.6
Q ss_pred HHHHHHhhhhccCCCCCCCCCCCCcceEEE--EEEe---------------cCEEEEEEeCCCCcccHHHHHHhhhcCCE
Q 029517 20 TLLEKLKSVYSNVEGLPPDRIVPTVGLNIG--RIEV---------------SNSKLVFWDLGGQPGLRSIWEKYYEEAHA 82 (192)
Q Consensus 20 ~l~~~~~~~~~~~~~~~~~~~~~T~g~~~~--~~~~---------------~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ 82 (192)
+|+.++.. +.+...+.||+|.++. .+.. ..+.++||||+|+++|..++..|++++++
T Consensus 36 SLI~rf~~------g~F~~~~~pTIG~d~~ik~I~~~~~~~~~~~ik~d~~k~v~LqIWDTAGqErfrsL~~~yyr~Adg 109 (334)
T PLN00023 36 SLVHLIVK------GSSIARPPQTIGCTVGVKHITYGSPGSSSNSIKGDSERDFFVELWDVSGHERYKDCRSLFYSQING 109 (334)
T ss_pred HHHHHHhc------CCcccccCCceeeeEEEEEEEECCcccccccccccCCceEEEEEEECCCChhhhhhhHHhccCCCE
Confidence 44555554 5667788999998764 2322 34789999999999999999999999999
Q ss_pred EEEEEeCCCcccHHHHHHHHHHHHhCCC-----------CCCCcEEEEEeCCCCCCC--------CCHHHHHhHcC
Q 029517 83 VVFVIDAACPSRFEDSKTALEKVLRNED-----------LQGAPLLILANKQDLPDA--------VSADELARYLD 139 (192)
Q Consensus 83 ii~v~D~~~~~s~~~~~~~~~~i~~~~~-----------~~~~piiiv~nK~Dl~~~--------~~~~~~~~~~~ 139 (192)
+|+|||+++..+++.+..|+..+..... ..++|+++|+||+||... +..+++.++++
T Consensus 110 iILVyDITdr~SFenL~kWl~eI~~~~~~s~p~~s~~~~~~~ipIILVGNK~DL~~~~~~r~~s~~~~e~a~~~A~ 185 (334)
T PLN00023 110 VIFVHDLSQRRTKTSLQKWASEVAATGTFSAPLGSGGPGGLPVPYIVIGNKADIAPKEGTRGSSGNLVDAARQWVE 185 (334)
T ss_pred EEEEEeCCCHHHHHHHHHHHHHHHHhcccccccccccccCCCCcEEEEEECccccccccccccccccHHHHHHHHH
Confidence 9999999999999999999999987531 125899999999999652 24677888876
No 150
>TIGR00231 small_GTP small GTP-binding protein domain. This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.
Probab=99.76 E-value=4.3e-17 Score=115.29 Aligned_cols=141 Identities=21% Similarity=0.237 Sum_probs=103.7
Q ss_pred ccccHHHHHHHHhhhhccCCCCCCCCCCCCcceEEEE--EEecC--EEEEEEeCCCCcccHHHHHHhhhcCCEEEEEEeC
Q 029517 14 TKTEFHTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGR--IEVSN--SKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDA 89 (192)
Q Consensus 14 kst~~~~l~~~~~~~~~~~~~~~~~~~~~T~g~~~~~--~~~~~--~~~~i~D~~G~~~~~~~~~~~~~~~d~ii~v~D~ 89 (192)
|||++|+|++. .+...+.++.+.++.. +..++ +.+.+||+||+..+...+..+.+.+++++.++|.
T Consensus 14 Kstl~~~l~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~~~d~ 83 (161)
T TIGR00231 14 KSTLLNRLLGN----------KFITEYKPGTTRNYVTTVIEEDGKTYKFNLLDTAGQEDYRAIRRLYYRAVESSLRVFDI 83 (161)
T ss_pred HHHHHHHHhCC----------CCcCcCCCCceeeeeEEEEEECCEEEEEEEEECCCcccchHHHHHHHhhhhEEEEEEEE
Confidence 67777777543 2445556677766654 44555 7899999999999999999899999999999999
Q ss_pred CCc-ccHHHHH-HHHHHHHhCCCCCCCcEEEEEeCCCCCCCCCHHHHHhHcCccccCCcceEEEEeeecCCCCHHHHHHH
Q 029517 90 ACP-SRFEDSK-TALEKVLRNEDLQGAPLLILANKQDLPDAVSADELARYLDLKKLDERVCMFEAVSGYDGFGIKESVEW 167 (192)
Q Consensus 90 ~~~-~s~~~~~-~~~~~i~~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~e~~~~ 167 (192)
... .++.... .+...+..... .+.|+++++||.|+......+.....+. .....+++++||++|.|+.+++++
T Consensus 84 ~~~v~~~~~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~----~~~~~~~~~~sa~~~~gv~~~~~~ 158 (161)
T TIGR00231 84 VILVLDVEEILEKQTKEIIHHAE-SNVPIILVGNKIDLRDAKLKTHVAFLFA----KLNGEPIIPLSAETGKNIDSAFKI 158 (161)
T ss_pred eeeehhhhhHhHHHHHHHHHhcc-cCCcEEEEEEcccCCcchhhHHHHHHHh----hccCCceEEeecCCCCCHHHHHHH
Confidence 876 6666655 56666655443 2789999999999976433334444443 133457999999999999999998
Q ss_pred HH
Q 029517 168 LV 169 (192)
Q Consensus 168 i~ 169 (192)
|.
T Consensus 159 l~ 160 (161)
T TIGR00231 159 VE 160 (161)
T ss_pred hh
Confidence 63
No 151
>TIGR00436 era GTP-binding protein Era. Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein.
Probab=99.76 E-value=1.3e-17 Score=129.33 Aligned_cols=145 Identities=17% Similarity=0.108 Sum_probs=93.2
Q ss_pred hccccHHHHHHHHhhhhccCCCCCCCCCCCCcceEEEEEEecCEEEEEEeCCCCccc--------HHHHHHhhhcCCEEE
Q 029517 13 FTKTEFHTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPGL--------RSIWEKYYEEAHAVV 84 (192)
Q Consensus 13 ~kst~~~~l~~~~~~~~~~~~~~~~~~~~~T~g~~~~~~~~~~~~~~i~D~~G~~~~--------~~~~~~~~~~~d~ii 84 (192)
=|||++|+|+++....++..++++... ........+.++.+|||||.... ......+++.+|+++
T Consensus 12 GKSTLln~L~~~~~~~vs~~~~TTr~~-------i~~i~~~~~~qii~vDTPG~~~~~~~l~~~~~~~~~~~l~~aDvvl 84 (270)
T TIGR00436 12 GKSTLLNQLHGQKISITSPKAQTTRNR-------ISGIHTTGASQIIFIDTPGFHEKKHSLNRLMMKEARSAIGGVDLIL 84 (270)
T ss_pred CHHHHHHHHhCCcEeecCCCCCcccCc-------EEEEEEcCCcEEEEEECcCCCCCcchHHHHHHHHHHHHHhhCCEEE
Confidence 389999999987544433333333221 11122334567999999996432 112345678999999
Q ss_pred EEEeCCCcccHHHHHHHHHHHHhCCCCCCCcEEEEEeCCCCCCCCC-HHHHHhHcCccccCCcceEEEEeeecCCCCHHH
Q 029517 85 FVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAVS-ADELARYLDLKKLDERVCMFEAVSGYDGFGIKE 163 (192)
Q Consensus 85 ~v~D~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~~~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~e 163 (192)
+|+|+++..+.+ ..++..+ .. .+.|+++|+||+|+..... .+.+..+... ....+++++||++|.|+++
T Consensus 85 ~VvD~~~~~~~~--~~i~~~l-~~---~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~----~~~~~v~~iSA~~g~gi~~ 154 (270)
T TIGR00436 85 FVVDSDQWNGDG--EFVLTKL-QN---LKRPVVLTRNKLDNKFKDKLLPLIDKYAIL----EDFKDIVPISALTGDNTSF 154 (270)
T ss_pred EEEECCCCCchH--HHHHHHH-Hh---cCCCEEEEEECeeCCCHHHHHHHHHHHHhh----cCCCceEEEecCCCCCHHH
Confidence 999999876664 2333333 22 3689999999999864211 1222233221 1122789999999999999
Q ss_pred HHHHHHHHHHh
Q 029517 164 SVEWLVEVMER 174 (192)
Q Consensus 164 ~~~~i~~~i~~ 174 (192)
++++|.+.+..
T Consensus 155 L~~~l~~~l~~ 165 (270)
T TIGR00436 155 LAAFIEVHLPE 165 (270)
T ss_pred HHHHHHHhCCC
Confidence 99999887654
No 152
>PRK03003 GTP-binding protein Der; Reviewed
Probab=99.75 E-value=3.1e-17 Score=136.43 Aligned_cols=146 Identities=25% Similarity=0.247 Sum_probs=93.9
Q ss_pred ccccHHHHHHHHhhhhccCCCCCCCCCCCCcceEEEEEEecCEEEEEEeCCCC----------cccHHHH-HHhhhcCCE
Q 029517 14 TKTEFHTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQ----------PGLRSIW-EKYYEEAHA 82 (192)
Q Consensus 14 kst~~~~l~~~~~~~~~~~~~~~~~~~~~T~g~~~~~~~~~~~~~~i~D~~G~----------~~~~~~~-~~~~~~~d~ 82 (192)
|||++|+|++.-....+..++.+.+ .....+...+..+.+|||||. +.|.... ..+++.+|+
T Consensus 224 KSSLin~l~~~~~~~~s~~~gtT~d-------~~~~~~~~~~~~~~l~DTaG~~~~~~~~~~~e~~~~~~~~~~i~~ad~ 296 (472)
T PRK03003 224 KSSLLNKLAGEERSVVDDVAGTTVD-------PVDSLIELGGKTWRFVDTAGLRRRVKQASGHEYYASLRTHAAIEAAEV 296 (472)
T ss_pred HHHHHHHHhCCCcccccCCCCccCC-------cceEEEEECCEEEEEEECCCccccccccchHHHHHHHHHHHHHhcCCE
Confidence 6777777765432222222222211 112334556677899999995 2333322 346789999
Q ss_pred EEEEEeCCCcccHHHHHHHHHHHHhCCCCCCCcEEEEEeCCCCCCCCCHH----HHHhHcCccccCCcceEEEEeeecCC
Q 029517 83 VVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAVSAD----ELARYLDLKKLDERVCMFEAVSGYDG 158 (192)
Q Consensus 83 ii~v~D~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~~~~~~----~~~~~~~~~~~~~~~~~~~~~Sa~~~ 158 (192)
+++|+|+++..+++.+. ++..+.. .++|+++|+||+|+.+..... ++.+.+. .....+++++||++|
T Consensus 297 vilV~Da~~~~s~~~~~-~~~~~~~----~~~piIiV~NK~Dl~~~~~~~~~~~~i~~~l~----~~~~~~~~~~SAk~g 367 (472)
T PRK03003 297 AVVLIDASEPISEQDQR-VLSMVIE----AGRALVLAFNKWDLVDEDRRYYLEREIDRELA----QVPWAPRVNISAKTG 367 (472)
T ss_pred EEEEEeCCCCCCHHHHH-HHHHHHH----cCCCEEEEEECcccCChhHHHHHHHHHHHhcc----cCCCCCEEEEECCCC
Confidence 99999999988877653 3343332 368999999999997532211 2222222 123467899999999
Q ss_pred CCHHHHHHHHHHHHHhc
Q 029517 159 FGIKESVEWLVEVMERS 175 (192)
Q Consensus 159 ~gi~e~~~~i~~~i~~~ 175 (192)
.||+++|+.+.+.+...
T Consensus 368 ~gv~~lf~~i~~~~~~~ 384 (472)
T PRK03003 368 RAVDKLVPALETALESW 384 (472)
T ss_pred CCHHHHHHHHHHHHHHh
Confidence 99999999999877644
No 153
>TIGR02528 EutP ethanolamine utilization protein, EutP. This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site.
Probab=99.75 E-value=3.9e-18 Score=119.81 Aligned_cols=122 Identities=17% Similarity=0.101 Sum_probs=84.1
Q ss_pred ccccHHHHHHHHhhhhccCCCCCCCCCCCCcceEEEEEEecCEEEEEEeCCCCc-----ccHHHHHHhhhcCCEEEEEEe
Q 029517 14 TKTEFHTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQP-----GLRSIWEKYYEEAHAVVFVID 88 (192)
Q Consensus 14 kst~~~~l~~~~~~~~~~~~~~~~~~~~~T~g~~~~~~~~~~~~~~i~D~~G~~-----~~~~~~~~~~~~~d~ii~v~D 88 (192)
|||++|+|.+. .+ .+.+|++.++.. .+|||||+. .+..... .++++|++++|+|
T Consensus 13 KSsL~~~l~~~----------~~--~~~~t~~~~~~~--------~~iDt~G~~~~~~~~~~~~~~-~~~~ad~vilv~d 71 (142)
T TIGR02528 13 KTTLTQALQGE----------EI--LYKKTQAVEYND--------GAIDTPGEYVENRRLYSALIV-TAADADVIALVQS 71 (142)
T ss_pred HHHHHHHHcCC----------cc--ccccceeEEEcC--------eeecCchhhhhhHHHHHHHHH-HhhcCCEEEEEec
Confidence 77777777533 11 245676655422 689999973 2333333 5789999999999
Q ss_pred CCCcccHHHHHHHHHHHHhCCCCCCCcEEEEEeCCCCCC-CCCHHHHHhHcCccccCCcc-eEEEEeeecCCCCHHHHHH
Q 029517 89 AACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPD-AVSADELARYLDLKKLDERV-CMFEAVSGYDGFGIKESVE 166 (192)
Q Consensus 89 ~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~gi~e~~~ 166 (192)
++++.++.. ..|... ...|+++++||+|+.+ ....++..++++ ..+ .+++++||++|.|++++|+
T Consensus 72 ~~~~~s~~~-~~~~~~-------~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~gi~~l~~ 138 (142)
T TIGR02528 72 ATDPESRFP-PGFASI-------FVKPVIGLVTKIDLAEADVDIERAKELLE-----TAGAEPIFEISSVDEQGLEALVD 138 (142)
T ss_pred CCCCCcCCC-hhHHHh-------ccCCeEEEEEeeccCCcccCHHHHHHHHH-----HcCCCcEEEEecCCCCCHHHHHH
Confidence 999988754 233321 1249999999999965 334455555554 223 3789999999999999999
Q ss_pred HHH
Q 029517 167 WLV 169 (192)
Q Consensus 167 ~i~ 169 (192)
++.
T Consensus 139 ~l~ 141 (142)
T TIGR02528 139 YLN 141 (142)
T ss_pred HHh
Confidence 874
No 154
>TIGR03156 GTP_HflX GTP-binding protein HflX. This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like).
Probab=99.75 E-value=2.5e-17 Score=131.76 Aligned_cols=139 Identities=22% Similarity=0.255 Sum_probs=93.7
Q ss_pred ccccHHHHHHHHhhhhccCCCCCCCCCCCCcceEEEEEEe-cCEEEEEEeCCCC---------cccHHHHHHhhhcCCEE
Q 029517 14 TKTEFHTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEV-SNSKLVFWDLGGQ---------PGLRSIWEKYYEEAHAV 83 (192)
Q Consensus 14 kst~~~~l~~~~~~~~~~~~~~~~~~~~~T~g~~~~~~~~-~~~~~~i~D~~G~---------~~~~~~~~~~~~~~d~i 83 (192)
|||++|+|+++-. . ..+.+.+|.+.....+.. ++..+.+|||+|. +.|...+ ..++++|++
T Consensus 202 KSSLln~L~~~~~----~----v~~~~~tT~d~~~~~i~~~~~~~i~l~DT~G~~~~l~~~lie~f~~tl-e~~~~ADli 272 (351)
T TIGR03156 202 KSTLFNALTGADV----Y----AADQLFATLDPTTRRLDLPDGGEVLLTDTVGFIRDLPHELVAAFRATL-EEVREADLL 272 (351)
T ss_pred HHHHHHHHhCCce----e----eccCCccccCCEEEEEEeCCCceEEEEecCcccccCCHHHHHHHHHHH-HHHHhCCEE
Confidence 7888888776421 1 112334555555555555 4578999999997 2233333 357899999
Q ss_pred EEEEeCCCcccHHHHHHHHHHHHhCCCCCCCcEEEEEeCCCCCCCCCHHHHHhHcCccccCCcceEEEEeeecCCCCHHH
Q 029517 84 VFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAVSADELARYLDLKKLDERVCMFEAVSGYDGFGIKE 163 (192)
Q Consensus 84 i~v~D~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~e 163 (192)
++|+|++++.+.+....|...+.... ..++|+++|+||+|+... +++..... ...+++++||++|.|+++
T Consensus 273 l~VvD~s~~~~~~~~~~~~~~L~~l~-~~~~piIlV~NK~Dl~~~---~~v~~~~~------~~~~~i~iSAktg~GI~e 342 (351)
T TIGR03156 273 LHVVDASDPDREEQIEAVEKVLEELG-AEDIPQLLVYNKIDLLDE---PRIERLEE------GYPEAVFVSAKTGEGLDL 342 (351)
T ss_pred EEEEECCCCchHHHHHHHHHHHHHhc-cCCCCEEEEEEeecCCCh---HhHHHHHh------CCCCEEEEEccCCCCHHH
Confidence 99999999887777655544443332 247899999999998642 22222211 124589999999999999
Q ss_pred HHHHHHHH
Q 029517 164 SVEWLVEV 171 (192)
Q Consensus 164 ~~~~i~~~ 171 (192)
++++|.+.
T Consensus 343 L~~~I~~~ 350 (351)
T TIGR03156 343 LLEAIAER 350 (351)
T ss_pred HHHHHHhh
Confidence 99998764
No 155
>PRK15494 era GTPase Era; Provisional
Probab=99.75 E-value=2.1e-17 Score=131.86 Aligned_cols=145 Identities=17% Similarity=0.250 Sum_probs=94.5
Q ss_pred hccccHHHHHHHHhhhhccCCCCCCCCCCCCcceEEEEEEecCEEEEEEeCCCCcc-cHHH-------HHHhhhcCCEEE
Q 029517 13 FTKTEFHTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPG-LRSI-------WEKYYEEAHAVV 84 (192)
Q Consensus 13 ~kst~~~~l~~~~~~~~~~~~~~~~~~~~~T~g~~~~~~~~~~~~~~i~D~~G~~~-~~~~-------~~~~~~~~d~ii 84 (192)
=|||++|+|++.....+ ...+.+|.+.....+..++.++.+|||||... +... ....++.+|+++
T Consensus 64 GKSTLin~l~~~k~~iv-------s~k~~tTr~~~~~~~~~~~~qi~~~DTpG~~~~~~~l~~~~~r~~~~~l~~aDvil 136 (339)
T PRK15494 64 GKSTLLNRIIGEKLSIV-------TPKVQTTRSIITGIITLKDTQVILYDTPGIFEPKGSLEKAMVRCAWSSLHSADLVL 136 (339)
T ss_pred CHHHHHHHHhCCceeec-------cCCCCCccCcEEEEEEeCCeEEEEEECCCcCCCcccHHHHHHHHHHHHhhhCCEEE
Confidence 37888888876543221 12334444444455666778899999999742 2111 123467999999
Q ss_pred EEEeCCCcccHHHHHH-HHHHHHhCCCCCCCcEEEEEeCCCCCCCCCHHHHHhHcCccccCCcceEEEEeeecCCCCHHH
Q 029517 85 FVIDAACPSRFEDSKT-ALEKVLRNEDLQGAPLLILANKQDLPDAVSADELARYLDLKKLDERVCMFEAVSGYDGFGIKE 163 (192)
Q Consensus 85 ~v~D~~~~~s~~~~~~-~~~~i~~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~e 163 (192)
+|+|.++. +..... ++..+... +.|.++|+||+|+... ...++.+.+... .....++++||++|.|+++
T Consensus 137 ~VvD~~~s--~~~~~~~il~~l~~~----~~p~IlViNKiDl~~~-~~~~~~~~l~~~---~~~~~i~~iSAktg~gv~e 206 (339)
T PRK15494 137 LIIDSLKS--FDDITHNILDKLRSL----NIVPIFLLNKIDIESK-YLNDIKAFLTEN---HPDSLLFPISALSGKNIDG 206 (339)
T ss_pred EEEECCCC--CCHHHHHHHHHHHhc----CCCEEEEEEhhcCccc-cHHHHHHHHHhc---CCCcEEEEEeccCccCHHH
Confidence 99997653 444433 33333322 4677889999998754 345555555410 1235799999999999999
Q ss_pred HHHHHHHHHHh
Q 029517 164 SVEWLVEVMER 174 (192)
Q Consensus 164 ~~~~i~~~i~~ 174 (192)
++++|.+.+..
T Consensus 207 L~~~L~~~l~~ 217 (339)
T PRK15494 207 LLEYITSKAKI 217 (339)
T ss_pred HHHHHHHhCCC
Confidence 99999987654
No 156
>cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily. BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co
Probab=99.75 E-value=5.6e-17 Score=119.97 Aligned_cols=146 Identities=19% Similarity=0.231 Sum_probs=93.4
Q ss_pred ccccHHHHHHHHhhhhccC--CCCC--CCCCCCCcceE----EEEEEecCEEEEEEeCCCCcccHHHHHHhhhcCCEEEE
Q 029517 14 TKTEFHTLLEKLKSVYSNV--EGLP--PDRIVPTVGLN----IGRIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVF 85 (192)
Q Consensus 14 kst~~~~l~~~~~~~~~~~--~~~~--~~~~~~T~g~~----~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ii~ 85 (192)
|||++++|++......... .+.. .....++.|.. ...+..+.+++.+|||||+++|...+..+++++|++++
T Consensus 15 KTsL~~~l~~~~~~~~~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~d~~il 94 (194)
T cd01891 15 KTTLVDALLKQSGTFRENEEVEERVMDSNDLERERGITILAKNTAVTYKDTKINIVDTPGHADFGGEVERVLSMVDGVLL 94 (194)
T ss_pred HHHHHHHHHHHcCCCCccCcccccccccchhHHhcccccccceeEEEECCEEEEEEECCCcHHHHHHHHHHHHhcCEEEE
Confidence 8899999887422111110 0000 01112333433 33466778999999999999999999999999999999
Q ss_pred EEeCCCcccHHHHHHHHHHHHhCCCCCCCcEEEEEeCCCCCCCCC---HHHHHhHcC-cc-ccCCcceEEEEeeecCCCC
Q 029517 86 VIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAVS---ADELARYLD-LK-KLDERVCMFEAVSGYDGFG 160 (192)
Q Consensus 86 v~D~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~~~~---~~~~~~~~~-~~-~~~~~~~~~~~~Sa~~~~g 160 (192)
|+|+++.. ......++..+.. .++|+++++||+|+..... .+++.+.+. +. .....+++++++||++|.|
T Consensus 95 V~d~~~~~-~~~~~~~~~~~~~----~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~~Sa~~g~~ 169 (194)
T cd01891 95 LVDASEGP-MPQTRFVLKKALE----LGLKPIVVINKIDRPDARPEEVVDEVFDLFIELGATEEQLDFPVLYASAKNGWA 169 (194)
T ss_pred EEECCCCc-cHHHHHHHHHHHH----cCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHhCCccccCccCEEEeehhcccc
Confidence 99998742 3333344444332 3689999999999975322 233334331 00 0113467899999999988
Q ss_pred HHHH
Q 029517 161 IKES 164 (192)
Q Consensus 161 i~e~ 164 (192)
+.+.
T Consensus 170 ~~~~ 173 (194)
T cd01891 170 SLNL 173 (194)
T ss_pred cccc
Confidence 8555
No 157
>PRK03003 GTP-binding protein Der; Reviewed
Probab=99.74 E-value=3.3e-17 Score=136.25 Aligned_cols=143 Identities=24% Similarity=0.242 Sum_probs=93.4
Q ss_pred hccccHHHHHHHHhhhhccCCCCCCCCCCCCcceEEEEEEecCEEEEEEeCCCCcc--------cHHHHHHhhhcCCEEE
Q 029517 13 FTKTEFHTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPG--------LRSIWEKYYEEAHAVV 84 (192)
Q Consensus 13 ~kst~~~~l~~~~~~~~~~~~~~~~~~~~~T~g~~~~~~~~~~~~~~i~D~~G~~~--------~~~~~~~~~~~~d~ii 84 (192)
=|||++|+|++.........+ ..|.......+...+..+.+|||||.+. +...+..+++.||++|
T Consensus 50 GKSSL~nrl~~~~~~~v~~~~-------gvT~d~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~~aD~il 122 (472)
T PRK03003 50 GKSTLVNRILGRREAVVEDVP-------GVTRDRVSYDAEWNGRRFTVVDTGGWEPDAKGLQASVAEQAEVAMRTADAVL 122 (472)
T ss_pred CHHHHHHHHhCcCcccccCCC-------CCCEeeEEEEEEECCcEEEEEeCCCcCCcchhHHHHHHHHHHHHHHhCCEEE
Confidence 388999988865332222211 1222233444555677899999999762 3444566889999999
Q ss_pred EEEeCCCcccHHHHHHHHHHHHhCCCCCCCcEEEEEeCCCCCCCCCHHHHHhHcCccccCCcceEEEEeeecCCCCHHHH
Q 029517 85 FVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAVSADELARYLDLKKLDERVCMFEAVSGYDGFGIKES 164 (192)
Q Consensus 85 ~v~D~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~e~ 164 (192)
+|+|+++..++.. ..+... .+. .++|+++|+||+|+.... .+ ..+...+ ..+ ..+++||++|.|++++
T Consensus 123 ~VvD~~~~~s~~~-~~i~~~-l~~---~~~piilV~NK~Dl~~~~-~~-~~~~~~~----g~~-~~~~iSA~~g~gi~eL 190 (472)
T PRK03003 123 FVVDATVGATATD-EAVARV-LRR---SGKPVILAANKVDDERGE-AD-AAALWSL----GLG-EPHPVSALHGRGVGDL 190 (472)
T ss_pred EEEECCCCCCHHH-HHHHHH-HHH---cCCCEEEEEECccCCccc-hh-hHHHHhc----CCC-CeEEEEcCCCCCcHHH
Confidence 9999998766543 223222 222 479999999999986532 11 2222221 112 2468999999999999
Q ss_pred HHHHHHHHHh
Q 029517 165 VEWLVEVMER 174 (192)
Q Consensus 165 ~~~i~~~i~~ 174 (192)
|++|.+.+.+
T Consensus 191 ~~~i~~~l~~ 200 (472)
T PRK03003 191 LDAVLAALPE 200 (472)
T ss_pred HHHHHhhccc
Confidence 9999988755
No 158
>cd01889 SelB_euk SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and euk
Probab=99.74 E-value=4e-17 Score=120.53 Aligned_cols=154 Identities=17% Similarity=0.107 Sum_probs=94.6
Q ss_pred ccccHHHHHHHHhhhhccCCCCCCCCCCCCcceEEEEEEec--------------CEEEEEEeCCCCcccHHHHHHhhhc
Q 029517 14 TKTEFHTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVS--------------NSKLVFWDLGGQPGLRSIWEKYYEE 79 (192)
Q Consensus 14 kst~~~~l~~~~~~~~~~~~~~~~~~~~~T~g~~~~~~~~~--------------~~~~~i~D~~G~~~~~~~~~~~~~~ 79 (192)
|||++++|+++.....-+. ........+|++..+..+... ...+.+|||||+..+........+.
T Consensus 13 KstLi~~l~~~~~~~~~~~-~~~e~~~g~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~ 91 (192)
T cd01889 13 KTSLAKALSEIASTAAFDK-NPQSQERGITLDLGFSSFYVDKPKHLRELINPGEENLQITLVDCPGHASLIRTIIGGAQI 91 (192)
T ss_pred HHHHHHHHHhccchhhhcc-CHHHHHcCCeeeecceEEEecccccccccccccccCceEEEEECCCcHHHHHHHHHHHhh
Confidence 7888888886411100000 000011234556555444332 6799999999997655444445667
Q ss_pred CCEEEEEEeCCCcccHHHHHHHHHHHHhCCCCCCCcEEEEEeCCCCCCCCC----HHHHHhHcC--ccccCCcceEEEEe
Q 029517 80 AHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAVS----ADELARYLD--LKKLDERVCMFEAV 153 (192)
Q Consensus 80 ~d~ii~v~D~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~~~~----~~~~~~~~~--~~~~~~~~~~~~~~ 153 (192)
+|++++|+|+++.........+. +... .+.|+++++||+|+..... .+++.+.+. +......+++++++
T Consensus 92 ~d~vi~VvD~~~~~~~~~~~~~~--~~~~---~~~~~iiv~NK~Dl~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vi~i 166 (192)
T cd01889 92 IDLMLLVVDATKGIQTQTAECLV--IGEI---LCKKLIVVLNKIDLIPEEERERKIEKMKKKLQKTLEKTRFKNSPIIPV 166 (192)
T ss_pred CCEEEEEEECCCCccHHHHHHHH--HHHH---cCCCEEEEEECcccCCHHHHHHHHHHHHHHHHHHHHhcCcCCCCEEEE
Confidence 89999999998765444332222 2222 3579999999999874222 222322221 00011346789999
Q ss_pred eecCCCCHHHHHHHHHHHHH
Q 029517 154 SGYDGFGIKESVEWLVEVME 173 (192)
Q Consensus 154 Sa~~~~gi~e~~~~i~~~i~ 173 (192)
||++|.|+++++++|.+++.
T Consensus 167 Sa~~g~gi~~L~~~l~~~~~ 186 (192)
T cd01889 167 SAKPGGGEAELGKDLNNLIV 186 (192)
T ss_pred eccCCCCHHHHHHHHHhccc
Confidence 99999999999999988765
No 159
>TIGR01393 lepA GTP-binding protein LepA. LepA (GUF1 in Saccaromyces) is a GTP-binding membrane protein related to EF-G and EF-Tu. Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including GUF1 of yeast) originated within the bacterial LepA family. The function is unknown.
Probab=99.74 E-value=8.4e-17 Score=136.51 Aligned_cols=149 Identities=18% Similarity=0.200 Sum_probs=102.5
Q ss_pred ccccHHHHHHHHhhhhccCCCCCCCCCC------CCcceEEE----EEE-----ecCEEEEEEeCCCCcccHHHHHHhhh
Q 029517 14 TKTEFHTLLEKLKSVYSNVEGLPPDRIV------PTVGLNIG----RIE-----VSNSKLVFWDLGGQPGLRSIWEKYYE 78 (192)
Q Consensus 14 kst~~~~l~~~~~~~~~~~~~~~~~~~~------~T~g~~~~----~~~-----~~~~~~~i~D~~G~~~~~~~~~~~~~ 78 (192)
|||++++|++..-.+... .+...+. .+.|+.+. .+. +..+.+++|||||+.+|...+..+++
T Consensus 16 KTTL~~rLl~~~g~i~~~---~~~~~~~D~~~~ErerGiTi~~~~v~~~~~~~~g~~~~l~liDTPG~~dF~~~v~~~l~ 92 (595)
T TIGR01393 16 KSTLADRLLEYTGAISER---EMREQVLDSMDLERERGITIKAQAVRLNYKAKDGETYVLNLIDTPGHVDFSYEVSRSLA 92 (595)
T ss_pred HHHHHHHHHHHcCCCccc---cccccccCCChHHHhcCCCeeeeEEEEEEEcCCCCEEEEEEEECCCcHHHHHHHHHHHH
Confidence 899999998754322111 1122222 22244333 232 23488999999999999999999999
Q ss_pred cCCEEEEEEeCCCcccHHHHHHHHHHHHhCCCCCCCcEEEEEeCCCCCCCCCH---HHHHhHcCccccCCcceEEEEeee
Q 029517 79 EAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAVSA---DELARYLDLKKLDERVCMFEAVSG 155 (192)
Q Consensus 79 ~~d~ii~v~D~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~~~~~---~~~~~~~~~~~~~~~~~~~~~~Sa 155 (192)
.||++|+|+|+++..+.+....|..... .+.|+++|+||+|+...... +++.+.+. .....++++||
T Consensus 93 ~aD~aILVvDat~g~~~qt~~~~~~~~~-----~~ipiIiViNKiDl~~~~~~~~~~el~~~lg-----~~~~~vi~vSA 162 (595)
T TIGR01393 93 ACEGALLLVDAAQGIEAQTLANVYLALE-----NDLEIIPVINKIDLPSADPERVKKEIEEVIG-----LDASEAILASA 162 (595)
T ss_pred hCCEEEEEecCCCCCCHhHHHHHHHHHH-----cCCCEEEEEECcCCCccCHHHHHHHHHHHhC-----CCcceEEEeec
Confidence 9999999999998777776666544331 36899999999999753222 22333322 11235899999
Q ss_pred cCCCCHHHHHHHHHHHHHhc
Q 029517 156 YDGFGIKESVEWLVEVMERS 175 (192)
Q Consensus 156 ~~~~gi~e~~~~i~~~i~~~ 175 (192)
++|.||++++++|.+.+...
T Consensus 163 ktG~GI~~Lle~I~~~lp~p 182 (595)
T TIGR01393 163 KTGIGIEEILEAIVKRVPPP 182 (595)
T ss_pred cCCCCHHHHHHHHHHhCCCC
Confidence 99999999999999877543
No 160
>PRK05291 trmE tRNA modification GTPase TrmE; Reviewed
Probab=99.73 E-value=4.5e-17 Score=134.38 Aligned_cols=136 Identities=24% Similarity=0.278 Sum_probs=94.8
Q ss_pred ccccHHHHHHHHhhhhccCCCCCCCCCCCCcceEEEEEEecCEEEEEEeCCCCcccHHH--------HHHhhhcCCEEEE
Q 029517 14 TKTEFHTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPGLRSI--------WEKYYEEAHAVVF 85 (192)
Q Consensus 14 kst~~~~l~~~~~~~~~~~~~~~~~~~~~T~g~~~~~~~~~~~~~~i~D~~G~~~~~~~--------~~~~~~~~d~ii~ 85 (192)
|||++|+|++.-....++.+ ..|.......+...+..+.+|||||...+... ...+++.+|++++
T Consensus 228 KSSLln~L~~~~~a~v~~~~-------gtT~d~~~~~i~~~g~~i~l~DT~G~~~~~~~ie~~gi~~~~~~~~~aD~il~ 300 (449)
T PRK05291 228 KSSLLNALLGEERAIVTDIA-------GTTRDVIEEHINLDGIPLRLIDTAGIRETDDEVEKIGIERSREAIEEADLVLL 300 (449)
T ss_pred HHHHHHHHhCCCCcccCCCC-------CcccccEEEEEEECCeEEEEEeCCCCCCCccHHHHHHHHHHHHHHHhCCEEEE
Confidence 67888887764322222222 22333334456667788999999998654322 2346889999999
Q ss_pred EEeCCCcccHHHHHHHHHHHHhCCCCCCCcEEEEEeCCCCCCCCCHHHHHhHcCccccCCcceEEEEeeecCCCCHHHHH
Q 029517 86 VIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAVSADELARYLDLKKLDERVCMFEAVSGYDGFGIKESV 165 (192)
Q Consensus 86 v~D~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~e~~ 165 (192)
|+|++++.+++....|.. ..+.|+++|+||+|+....... . ..+.+++++||++|.|+++++
T Consensus 301 VvD~s~~~s~~~~~~l~~-------~~~~piiiV~NK~DL~~~~~~~------~-----~~~~~~i~iSAktg~GI~~L~ 362 (449)
T PRK05291 301 VLDASEPLTEEDDEILEE-------LKDKPVIVVLNKADLTGEIDLE------E-----ENGKPVIRISAKTGEGIDELR 362 (449)
T ss_pred EecCCCCCChhHHHHHHh-------cCCCCcEEEEEhhhccccchhh------h-----ccCCceEEEEeeCCCCHHHHH
Confidence 999998887775444432 2578999999999997532211 1 224678999999999999999
Q ss_pred HHHHHHHHh
Q 029517 166 EWLVEVMER 174 (192)
Q Consensus 166 ~~i~~~i~~ 174 (192)
++|.+.+..
T Consensus 363 ~~L~~~l~~ 371 (449)
T PRK05291 363 EAIKELAFG 371 (449)
T ss_pred HHHHHHHhh
Confidence 999987754
No 161
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.73 E-value=4.1e-17 Score=134.35 Aligned_cols=149 Identities=24% Similarity=0.232 Sum_probs=93.6
Q ss_pred ccccHHHHHHHHhhhhccCCCCCCCCCCCCcceEEEEEEecCEEEEEEeCCCCcccHH-----------HHHHhhhcCCE
Q 029517 14 TKTEFHTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPGLRS-----------IWEKYYEEAHA 82 (192)
Q Consensus 14 kst~~~~l~~~~~~~~~~~~~~~~~~~~~T~g~~~~~~~~~~~~~~i~D~~G~~~~~~-----------~~~~~~~~~d~ 82 (192)
|||++|+|++.-.......++ .|.......+...+..+.+|||||..++.. ....+++.+|+
T Consensus 185 KSsLin~l~~~~~~~~~~~~g-------tt~~~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~e~~~~~~~~~~~~~ad~ 257 (429)
T TIGR03594 185 KSTLVNALLGEERVIVSDIAG-------TTRDSIDIPFERNGKKYLLIDTAGIRRKGKVTEGVEKYSVLRTLKAIERADV 257 (429)
T ss_pred HHHHHHHHHCCCeeecCCCCC-------ceECcEeEEEEECCcEEEEEECCCccccccchhhHHHHHHHHHHHHHHhCCE
Confidence 677777777543222222222 222222334555667899999999644321 12346889999
Q ss_pred EEEEEeCCCcccHHHHHHHHHHHHhCCCCCCCcEEEEEeCCCCC-CCCCHHHHHhHcCccccCCcceEEEEeeecCCCCH
Q 029517 83 VVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLP-DAVSADELARYLDLKKLDERVCMFEAVSGYDGFGI 161 (192)
Q Consensus 83 ii~v~D~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~-~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi 161 (192)
+++|+|++++.+..... ++..+.. .+.|+++|+||+|+. +....+++.+.+..........+++++||++|.|+
T Consensus 258 ~ilV~D~~~~~~~~~~~-~~~~~~~----~~~~iiiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~vi~~SA~~g~~v 332 (429)
T TIGR03594 258 VLLVLDATEGITEQDLR-IAGLILE----AGKALVIVVNKWDLVKDEKTREEFKKELRRKLPFLDFAPIVFISALTGQGV 332 (429)
T ss_pred EEEEEECCCCccHHHHH-HHHHHHH----cCCcEEEEEECcccCCCHHHHHHHHHHHHHhcccCCCCceEEEeCCCCCCH
Confidence 99999999877665542 2232222 368999999999997 22222333333221101123578999999999999
Q ss_pred HHHHHHHHHHHHh
Q 029517 162 KESVEWLVEVMER 174 (192)
Q Consensus 162 ~e~~~~i~~~i~~ 174 (192)
+++|+++.+....
T Consensus 333 ~~l~~~i~~~~~~ 345 (429)
T TIGR03594 333 DKLLDAIDEVYEN 345 (429)
T ss_pred HHHHHHHHHHHHH
Confidence 9999999887654
No 162
>TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer.
Probab=99.73 E-value=7.2e-17 Score=132.61 Aligned_cols=139 Identities=20% Similarity=0.278 Sum_probs=94.1
Q ss_pred ccccHHHHHHHHhhhhccCCCCCCCCCCCCcceEEEEEEecCEEEEEEeCCCCcccHHH--------HHHhhhcCCEEEE
Q 029517 14 TKTEFHTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPGLRSI--------WEKYYEEAHAVVF 85 (192)
Q Consensus 14 kst~~~~l~~~~~~~~~~~~~~~~~~~~~T~g~~~~~~~~~~~~~~i~D~~G~~~~~~~--------~~~~~~~~d~ii~ 85 (192)
|||++|+|++.-...++..+ ..|.......+..++..+.+|||||...+... ...+++++|++++
T Consensus 216 KSSLiN~L~~~~~aivs~~p-------gtTrd~~~~~i~~~g~~v~l~DTaG~~~~~~~ie~~gi~~~~~~~~~aD~il~ 288 (442)
T TIGR00450 216 KSSLLNALLKQDRAIVSDIK-------GTTRDVVEGDFELNGILIKLLDTAGIREHADFVERLGIEKSFKAIKQADLVIY 288 (442)
T ss_pred HHHHHHHHhCCCCcccCCCC-------CcEEEEEEEEEEECCEEEEEeeCCCcccchhHHHHHHHHHHHHHHhhCCEEEE
Confidence 67777777764322222211 11222333456667888999999998654332 2357889999999
Q ss_pred EEeCCCcccHHHHHHHHHHHHhCCCCCCCcEEEEEeCCCCCCCCCHHHHHhHcCccccCCcceEEEEeeecCCCCHHHHH
Q 029517 86 VIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAVSADELARYLDLKKLDERVCMFEAVSGYDGFGIKESV 165 (192)
Q Consensus 86 v~D~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~e~~ 165 (192)
|+|++++.+++.. |+..+.. .+.|+++|+||+|+... +.+ .+.+ ..+.+++++||++ .||+++|
T Consensus 289 V~D~s~~~s~~~~--~l~~~~~----~~~piIlV~NK~Dl~~~-~~~---~~~~-----~~~~~~~~vSak~-~gI~~~~ 352 (442)
T TIGR00450 289 VLDASQPLTKDDF--LIIDLNK----SKKPFILVLNKIDLKIN-SLE---FFVS-----SKVLNSSNLSAKQ-LKIKALV 352 (442)
T ss_pred EEECCCCCChhHH--HHHHHhh----CCCCEEEEEECccCCCc-chh---hhhh-----hcCCceEEEEEec-CCHHHHH
Confidence 9999988877764 6555432 36899999999999654 222 2222 2345788999998 6999999
Q ss_pred HHHHHHHHhc
Q 029517 166 EWLVEVMERS 175 (192)
Q Consensus 166 ~~i~~~i~~~ 175 (192)
+.+.+.+.+.
T Consensus 353 ~~L~~~i~~~ 362 (442)
T TIGR00450 353 DLLTQKINAF 362 (442)
T ss_pred HHHHHHHHHH
Confidence 9999887654
No 163
>PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B ....
Probab=99.72 E-value=2.1e-17 Score=117.07 Aligned_cols=133 Identities=24% Similarity=0.305 Sum_probs=92.3
Q ss_pred hccccHHHHHHHHhhhhccCCCCCCCCCCCCcceEEEEEEecCEEEEEEeCCCCccc------HHHHHHhh--hcCCEEE
Q 029517 13 FTKTEFHTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPGL------RSIWEKYY--EEAHAVV 84 (192)
Q Consensus 13 ~kst~~~~l~~~~~~~~~~~~~~~~~~~~~T~g~~~~~~~~~~~~~~i~D~~G~~~~------~~~~~~~~--~~~d~ii 84 (192)
=|||+||+|.++... .++++ ..|.....+.+...+..+.++|+||.... ......++ .+.|+++
T Consensus 12 GKStLfN~Ltg~~~~-v~n~p-------G~Tv~~~~g~~~~~~~~~~lvDlPG~ysl~~~s~ee~v~~~~l~~~~~D~ii 83 (156)
T PF02421_consen 12 GKSTLFNALTGAKQK-VGNWP-------GTTVEKKEGIFKLGDQQVELVDLPGIYSLSSKSEEERVARDYLLSEKPDLII 83 (156)
T ss_dssp SHHHHHHHHHTTSEE-EEEST-------TSSSEEEEEEEEETTEEEEEEE----SSSSSSSHHHHHHHHHHHHTSSSEEE
T ss_pred CHHHHHHHHHCCCce-ecCCC-------CCCeeeeeEEEEecCceEEEEECCCcccCCCCCcHHHHHHHHHhhcCCCEEE
Confidence 489999999887633 34443 34455556678878899999999994321 22334444 5799999
Q ss_pred EEEeCCCcccHHHHHHHHHHHHhCCCCCCCcEEEEEeCCCCCC----CCCHHHHHhHcCccccCCcceEEEEeeecCCCC
Q 029517 85 FVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPD----AVSADELARYLDLKKLDERVCMFEAVSGYDGFG 160 (192)
Q Consensus 85 ~v~D~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~----~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~g 160 (192)
+|+|+++ +++-.....++.+. ++|+++++||+|+.. .++.+.+.+.+ +++++++||+++.|
T Consensus 84 ~VvDa~~---l~r~l~l~~ql~e~----g~P~vvvlN~~D~a~~~g~~id~~~Ls~~L--------g~pvi~~sa~~~~g 148 (156)
T PF02421_consen 84 VVVDATN---LERNLYLTLQLLEL----GIPVVVVLNKMDEAERKGIEIDAEKLSERL--------GVPVIPVSARTGEG 148 (156)
T ss_dssp EEEEGGG---HHHHHHHHHHHHHT----TSSEEEEEETHHHHHHTTEEE-HHHHHHHH--------TS-EEEEBTTTTBT
T ss_pred EECCCCC---HHHHHHHHHHHHHc----CCCEEEEEeCHHHHHHcCCEECHHHHHHHh--------CCCEEEEEeCCCcC
Confidence 9999986 45544555566554 699999999999865 34455666555 47999999999999
Q ss_pred HHHHHHHH
Q 029517 161 IKESVEWL 168 (192)
Q Consensus 161 i~e~~~~i 168 (192)
+++++++|
T Consensus 149 ~~~L~~~I 156 (156)
T PF02421_consen 149 IDELKDAI 156 (156)
T ss_dssp HHHHHHHH
T ss_pred HHHHHhhC
Confidence 99999875
No 164
>cd01888 eIF2_gamma eIF2-gamma (gamma subunit of initiation factor 2). eIF2 is a heterotrimeric translation initiation factor that consists of alpha, beta, and gamma subunits. The GTP-bound gamma subunit also binds initiator methionyl-tRNA and delivers it to the 40S ribosomal subunit. Following hydrolysis of GTP to GDP, eIF2:GDP is released from the ribosome. The gamma subunit has no intrinsic GTPase activity, but is stimulated by the GTPase activating protein (GAP) eIF5, and GDP/GTP exchange is stimulated by the guanine nucleotide exchange factor (GEF) eIF2B. eIF2B is a heteropentamer, and the epsilon chain binds eIF2. Both eIF5 and eIF2B-epsilon are known to bind strongly to eIF2-beta, but have also been shown to bind directly to eIF2-gamma. It is possible that eIF2-beta serves simply as a high-affinity docking site for eIF5 and eIF2B-epsilon, or that eIF2-beta serves a regulatory role. eIF2-gamma is found only in eukaryotes and archaea. It is closely related to SelB, the sel
Probab=99.71 E-value=9.8e-17 Score=119.53 Aligned_cols=114 Identities=16% Similarity=0.162 Sum_probs=78.5
Q ss_pred EEEEEEeCCCCcccHHHHHHhhhcCCEEEEEEeCCCcccHHHHHHHHHHHHhCCCCCCCcEEEEEeCCCCCCCCCH----
Q 029517 56 SKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAVSA---- 131 (192)
Q Consensus 56 ~~~~i~D~~G~~~~~~~~~~~~~~~d~ii~v~D~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~~~~~---- 131 (192)
.++.||||||++++...+...+..+|++++|+|++++..-......+..+... ...|+++++||+|+......
T Consensus 83 ~~i~~iDtPG~~~~~~~~~~~~~~~D~~llVvd~~~~~~~~~t~~~l~~~~~~---~~~~iiivvNK~Dl~~~~~~~~~~ 159 (203)
T cd01888 83 RHVSFVDCPGHEILMATMLSGAAVMDGALLLIAANEPCPQPQTSEHLAALEIM---GLKHIIIVQNKIDLVKEEQALENY 159 (203)
T ss_pred cEEEEEECCChHHHHHHHHHhhhcCCEEEEEEECCCCCCCcchHHHHHHHHHc---CCCcEEEEEEchhccCHHHHHHHH
Confidence 68999999999998888888888999999999998642111111222222222 23579999999999752211
Q ss_pred HHHHhHcCccccCCcceEEEEeeecCCCCHHHHHHHHHHHHHh
Q 029517 132 DELARYLDLKKLDERVCMFEAVSGYDGFGIKESVEWLVEVMER 174 (192)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~e~~~~i~~~i~~ 174 (192)
+++.+.++. ......+++++||++|.|+++++++|.+.+..
T Consensus 160 ~~i~~~~~~--~~~~~~~i~~vSA~~g~gi~~L~~~l~~~l~~ 200 (203)
T cd01888 160 EQIKKFVKG--TIAENAPIIPISAQLKYNIDVLLEYIVKKIPT 200 (203)
T ss_pred HHHHHHHhc--cccCCCcEEEEeCCCCCCHHHHHHHHHHhCCC
Confidence 233333321 11235789999999999999999999876543
No 165
>COG2229 Predicted GTPase [General function prediction only]
Probab=99.71 E-value=3.7e-16 Score=111.14 Aligned_cols=152 Identities=19% Similarity=0.301 Sum_probs=116.5
Q ss_pred hccccHHHHHHHHhhhhccCC--CCCCCCCCCCcceEEEEEEecC-EEEEEEeCCCCcccHHHHHHhhhcCCEEEEEEeC
Q 029517 13 FTKTEFHTLLEKLKSVYSNVE--GLPPDRIVPTVGLNIGRIEVSN-SKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDA 89 (192)
Q Consensus 13 ~kst~~~~l~~~~~~~~~~~~--~~~~~~~~~T~g~~~~~~~~~~-~~~~i~D~~G~~~~~~~~~~~~~~~d~ii~v~D~ 89 (192)
-|+|+++++.....-.+.-.+ .........|+.++++.....+ ..+.++|||||++|..+|.-+++++.++|+++|.
T Consensus 22 gKtTfv~~~s~k~~v~t~~~~~~~s~k~kr~tTva~D~g~~~~~~~~~v~LfgtPGq~RF~fm~~~l~~ga~gaivlVDs 101 (187)
T COG2229 22 GKTTFVRALSDKPLVITEADASSVSGKGKRPTTVAMDFGSIELDEDTGVHLFGTPGQERFKFMWEILSRGAVGAIVLVDS 101 (187)
T ss_pred chhhHHHHhhccccceeeccccccccccccceeEeecccceEEcCcceEEEecCCCcHHHHHHHHHHhCCcceEEEEEec
Confidence 367777777665531111100 1111133578899999887765 8999999999999999999999999999999999
Q ss_pred CCcccHHHHHHHHHHHHhCCCCCCCcEEEEEeCCCCCCCCCHHHHHhHcCccccCCcceEEEEeeecCCCCHHHHHHHHH
Q 029517 90 ACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAVSADELARYLDLKKLDERVCMFEAVSGYDGFGIKESVEWLV 169 (192)
Q Consensus 90 ~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~e~~~~i~ 169 (192)
+.+..+ .....+..+... ..+|+++.+||.|+..+.+.+.+.+.+++.. ...+.++++|..+.|..+.++.+.
T Consensus 102 s~~~~~-~a~~ii~f~~~~---~~ip~vVa~NK~DL~~a~ppe~i~e~l~~~~---~~~~vi~~~a~e~~~~~~~L~~ll 174 (187)
T COG2229 102 SRPITF-HAEEIIDFLTSR---NPIPVVVAINKQDLFDALPPEKIREALKLEL---LSVPVIEIDATEGEGARDQLDVLL 174 (187)
T ss_pred CCCcch-HHHHHHHHHhhc---cCCCEEEEeeccccCCCCCHHHHHHHHHhcc---CCCceeeeecccchhHHHHHHHHH
Confidence 999888 444444444333 2399999999999999999999999998422 478999999999999999998887
Q ss_pred HH
Q 029517 170 EV 171 (192)
Q Consensus 170 ~~ 171 (192)
..
T Consensus 175 ~~ 176 (187)
T COG2229 175 LK 176 (187)
T ss_pred hh
Confidence 65
No 166
>cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes. It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance.
Probab=99.71 E-value=4.7e-16 Score=110.41 Aligned_cols=135 Identities=23% Similarity=0.183 Sum_probs=91.7
Q ss_pred ccccHHHHHHHHhhhhccCCCCCCCCCCCCcceEEEEEEecCEEEEEEeCCCCcccHH--------HHHHhhhcCCEEEE
Q 029517 14 TKTEFHTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPGLRS--------IWEKYYEEAHAVVF 85 (192)
Q Consensus 14 kst~~~~l~~~~~~~~~~~~~~~~~~~~~T~g~~~~~~~~~~~~~~i~D~~G~~~~~~--------~~~~~~~~~d~ii~ 85 (192)
|||++|+|.+.-..... .....|.......+.....++.+|||||...+.. ....++..+|++++
T Consensus 14 Kstli~~l~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 86 (157)
T cd04164 14 KSSLLNALAGRDRAIVS-------DIAGTTRDVIEESIDIGGIPVRLIDTAGIRETEDEIEKIGIERAREAIEEADLVLF 86 (157)
T ss_pred HHHHHHHHHCCceEecc-------CCCCCccceEEEEEEeCCEEEEEEECCCcCCCcchHHHHHHHHHHHHHhhCCEEEE
Confidence 78888877654221111 1112233333344555677899999999765422 12346779999999
Q ss_pred EEeCCCcccHHHHHHHHHHHHhCCCCCCCcEEEEEeCCCCCCCCCHHHHHhHcCccccCCcceEEEEeeecCCCCHHHHH
Q 029517 86 VIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAVSADELARYLDLKKLDERVCMFEAVSGYDGFGIKESV 165 (192)
Q Consensus 86 v~D~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~e~~ 165 (192)
|+|++++.+......+.. ..+.|+++++||+|+...... .. .....+++++||+++.|+++++
T Consensus 87 v~d~~~~~~~~~~~~~~~-------~~~~~vi~v~nK~D~~~~~~~-----~~-----~~~~~~~~~~Sa~~~~~v~~l~ 149 (157)
T cd04164 87 VIDASRGLDEEDLEILEL-------PADKPIIVVLNKSDLLPDSEL-----LS-----LLAGKPIIAISAKTGEGLDELK 149 (157)
T ss_pred EEECCCCCCHHHHHHHHh-------hcCCCEEEEEEchhcCCcccc-----cc-----ccCCCceEEEECCCCCCHHHHH
Confidence 999998777766544322 257999999999998753322 11 2346789999999999999999
Q ss_pred HHHHHHH
Q 029517 166 EWLVEVM 172 (192)
Q Consensus 166 ~~i~~~i 172 (192)
++|.+.+
T Consensus 150 ~~l~~~~ 156 (157)
T cd04164 150 EALLELA 156 (157)
T ss_pred HHHHHhh
Confidence 9988754
No 167
>KOG0096 consensus GTPase Ran/TC4/GSP1 (nuclear protein transport pathway), small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.70 E-value=2.3e-17 Score=117.42 Aligned_cols=135 Identities=13% Similarity=0.317 Sum_probs=113.9
Q ss_pred CCCCCCCCCCcceEEEEEE----ecCEEEEEEeCCCCcccHHHHHHhhhcCCEEEEEEeCCCcccHHHHHHHHHHHHhCC
Q 029517 34 GLPPDRIVPTVGLNIGRIE----VSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNE 109 (192)
Q Consensus 34 ~~~~~~~~~T~g~~~~~~~----~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ii~v~D~~~~~s~~~~~~~~~~i~~~~ 109 (192)
+.|...|.||+|.++.... .+.+++..|||.|++.+......|+-...|+|+|+|++..-++..+..|...+.+.+
T Consensus 33 geFe~~y~at~Gv~~~pl~f~tn~g~irf~~wdtagqEk~gglrdgyyI~~qcAiimFdVtsr~t~~n~~rwhrd~~rv~ 112 (216)
T KOG0096|consen 33 GEFEKTYPATLGVEVHPLLFDTNRGQIRFNVWDTAGQEKKGGLRDGYYIQGQCAIIMFDVTSRFTYKNVPRWHRDLVRVR 112 (216)
T ss_pred ccceecccCcceeEEeeeeeecccCcEEEEeeecccceeecccccccEEecceeEEEeeeeehhhhhcchHHHHHHHHHh
Confidence 7788899999999998643 235899999999999999999999999999999999999999999999999999887
Q ss_pred CCCCCcEEEEEeCCCCCCCCCHHHHHhHcCccccCCcceEEEEeeecCCCCHHHHHHHHHHHHHhc
Q 029517 110 DLQGAPLLILANKQDLPDAVSADELARYLDLKKLDERVCMFEAVSGYDGFGIKESVEWLVEVMERS 175 (192)
Q Consensus 110 ~~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~e~~~~i~~~i~~~ 175 (192)
.++||+++|||.|..+......-..+.. ..+++++++||+.+.|.+.-|-|+.+.+...
T Consensus 113 --~NiPiv~cGNKvDi~~r~~k~k~v~~~r-----kknl~y~~iSaksn~NfekPFl~LarKl~G~ 171 (216)
T KOG0096|consen 113 --ENIPIVLCGNKVDIKARKVKAKPVSFHR-----KKNLQYYEISAKSNYNFERPFLWLARKLTGD 171 (216)
T ss_pred --cCCCeeeeccceeccccccccccceeee-----cccceeEEeecccccccccchHHHhhhhcCC
Confidence 4699999999999765332222222332 5689999999999999999999999988654
No 168
>PRK00093 GTP-binding protein Der; Reviewed
Probab=99.70 E-value=3.4e-16 Score=129.13 Aligned_cols=139 Identities=24% Similarity=0.302 Sum_probs=93.3
Q ss_pred hccccHHHHHHHHhhhhccCCCCCCCCCCCCcceEEEEEEecCEEEEEEeCCCCcc--------cHHHHHHhhhcCCEEE
Q 029517 13 FTKTEFHTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPG--------LRSIWEKYYEEAHAVV 84 (192)
Q Consensus 13 ~kst~~~~l~~~~~~~~~~~~~~~~~~~~~T~g~~~~~~~~~~~~~~i~D~~G~~~--------~~~~~~~~~~~~d~ii 84 (192)
=|||++|+|+++......+.+ ..|....+......+..+.+|||||++. +......+++.+|+++
T Consensus 13 GKStL~n~l~~~~~~~v~~~~-------~~t~d~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~~~~~~~~~~~~ad~il 85 (435)
T PRK00093 13 GKSTLFNRLTGKRDAIVADTP-------GVTRDRIYGEAEWLGREFILIDTGGIEPDDDGFEKQIREQAELAIEEADVIL 85 (435)
T ss_pred CHHHHHHHHhCCCceeeCCCC-------CCcccceEEEEEECCcEEEEEECCCCCCcchhHHHHHHHHHHHHHHhCCEEE
Confidence 389999999865433222222 2233334555666678999999999876 3334556788999999
Q ss_pred EEEeCCCcccHHHHHHHHHHHHhCCCCCCCcEEEEEeCCCCCCCCCHHHHHhHcCccccCCcce-EEEEeeecCCCCHHH
Q 029517 85 FVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAVSADELARYLDLKKLDERVC-MFEAVSGYDGFGIKE 163 (192)
Q Consensus 85 ~v~D~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~gi~e 163 (192)
+|+|++++.+... .++..++.. .++|+++|+||+|+.+. .+...++.. .++ .++++||++|.|+++
T Consensus 86 ~vvd~~~~~~~~~--~~~~~~l~~---~~~piilv~NK~D~~~~--~~~~~~~~~------lg~~~~~~iSa~~g~gv~~ 152 (435)
T PRK00093 86 FVVDGRAGLTPAD--EEIAKILRK---SNKPVILVVNKVDGPDE--EADAYEFYS------LGLGEPYPISAEHGRGIGD 152 (435)
T ss_pred EEEECCCCCCHHH--HHHHHHHHH---cCCcEEEEEECccCccc--hhhHHHHHh------cCCCCCEEEEeeCCCCHHH
Confidence 9999987544322 223333333 37899999999997541 223333322 122 378999999999999
Q ss_pred HHHHHHHH
Q 029517 164 SVEWLVEV 171 (192)
Q Consensus 164 ~~~~i~~~ 171 (192)
+++++...
T Consensus 153 l~~~I~~~ 160 (435)
T PRK00093 153 LLDAILEE 160 (435)
T ss_pred HHHHHHhh
Confidence 99999873
No 169
>COG1160 Predicted GTPases [General function prediction only]
Probab=99.70 E-value=1.8e-16 Score=127.16 Aligned_cols=144 Identities=23% Similarity=0.303 Sum_probs=109.7
Q ss_pred hhhccccHHHHHHHHhhhhccCCCCCCCCCCCCcceEEEEEEecCEEEEEEeCCCCccc---------HHHHHHhhhcCC
Q 029517 11 YIFTKTEFHTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPGL---------RSIWEKYYEEAH 81 (192)
Q Consensus 11 ~~~kst~~~~l~~~~~~~~~~~~~~~~~~~~~T~g~~~~~~~~~~~~~~i~D~~G~~~~---------~~~~~~~~~~~d 81 (192)
++=|||+||+|+++..+++++.++.+++.. +......+..+.+.||+|.+.- .......+..||
T Consensus 13 NVGKSTLFNRL~g~r~AIV~D~pGvTRDr~-------y~~~~~~~~~f~lIDTgGl~~~~~~~l~~~i~~Qa~~Ai~eAD 85 (444)
T COG1160 13 NVGKSTLFNRLTGRRIAIVSDTPGVTRDRI-------YGDAEWLGREFILIDTGGLDDGDEDELQELIREQALIAIEEAD 85 (444)
T ss_pred CCcHHHHHHHHhCCeeeEeecCCCCccCCc-------cceeEEcCceEEEEECCCCCcCCchHHHHHHHHHHHHHHHhCC
Confidence 456999999999999999999999999986 5666667788999999996532 223455678899
Q ss_pred EEEEEEeCCCcccHHHHHHHHHHHHhCCCCCCCcEEEEEeCCCCCCCCCHHHHHhHcCccccCCcceEEEEeeecCCCCH
Q 029517 82 AVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAVSADELARYLDLKKLDERVCMFEAVSGYDGFGI 161 (192)
Q Consensus 82 ~ii~v~D~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi 161 (192)
++|||+|....-+-+. +.+.+++.. .++|+++|+||+|... ..+.+.++.. ..--..+.+||..|.|+
T Consensus 86 vilfvVD~~~Git~~D--~~ia~~Lr~---~~kpviLvvNK~D~~~--~e~~~~efys-----lG~g~~~~ISA~Hg~Gi 153 (444)
T COG1160 86 VILFVVDGREGITPAD--EEIAKILRR---SKKPVILVVNKIDNLK--AEELAYEFYS-----LGFGEPVPISAEHGRGI 153 (444)
T ss_pred EEEEEEeCCCCCCHHH--HHHHHHHHh---cCCCEEEEEEcccCch--hhhhHHHHHh-----cCCCCceEeehhhccCH
Confidence 9999999987543333 555555553 5799999999999763 2233444443 11235789999999999
Q ss_pred HHHHHHHHHHHH
Q 029517 162 KESVEWLVEVME 173 (192)
Q Consensus 162 ~e~~~~i~~~i~ 173 (192)
.++.+++.+.+.
T Consensus 154 ~dLld~v~~~l~ 165 (444)
T COG1160 154 GDLLDAVLELLP 165 (444)
T ss_pred HHHHHHHHhhcC
Confidence 999999999874
No 170
>PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site. The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C ....
Probab=99.70 E-value=1.6e-16 Score=117.02 Aligned_cols=155 Identities=21% Similarity=0.244 Sum_probs=103.8
Q ss_pred ccccHHHHHHHHhhhhcc--------CCCCC--CCCCCCCcceEEEEEE--ecCEEEEEEeCCCCcccHHHHHHhhhcCC
Q 029517 14 TKTEFHTLLEKLKSVYSN--------VEGLP--PDRIVPTVGLNIGRIE--VSNSKLVFWDLGGQPGLRSIWEKYYEEAH 81 (192)
Q Consensus 14 kst~~~~l~~~~~~~~~~--------~~~~~--~~~~~~T~g~~~~~~~--~~~~~~~i~D~~G~~~~~~~~~~~~~~~d 81 (192)
|||++++|+......... ..... .....-|+......+. .....+.++|+||+.+|.......++.+|
T Consensus 16 KTTL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~ti~~~~~~~~~~~~~~~i~~iDtPG~~~f~~~~~~~~~~~D 95 (188)
T PF00009_consen 16 KTTLLGALLGKAGAIDKRGIEETKNAFLDKHPEERERGITIDLSFISFEKNENNRKITLIDTPGHEDFIKEMIRGLRQAD 95 (188)
T ss_dssp HHHHHHHHHHHHTSSSSHHHHHHHHCHHHSSHHHHHCTSSSSSEEEEEEBTESSEEEEEEEESSSHHHHHHHHHHHTTSS
T ss_pred cEeechhhhhhccccccccccccccccccccchhhhcccccccccccccccccccceeecccccccceeecccceecccc
Confidence 789999988766431110 00000 1123556666677777 77899999999999999998888899999
Q ss_pred EEEEEEeCCCcccHHHHHHHHHHHHhCCCCCCCcEEEEEeCCCCCCC---CCHHHHH-hHcCccccCC-cceEEEEeeec
Q 029517 82 AVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDA---VSADELA-RYLDLKKLDE-RVCMFEAVSGY 156 (192)
Q Consensus 82 ~ii~v~D~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~~---~~~~~~~-~~~~~~~~~~-~~~~~~~~Sa~ 156 (192)
++|+|+|+.++-.... .+.+..+.. .++|+++++||+|+... ...+++. .+++...... ..++++++||+
T Consensus 96 ~ailvVda~~g~~~~~-~~~l~~~~~----~~~p~ivvlNK~D~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vi~~Sa~ 170 (188)
T PF00009_consen 96 IAILVVDANDGIQPQT-EEHLKILRE----LGIPIIVVLNKMDLIEKELEEIIEEIKEKLLKEYGENGEEIVPVIPISAL 170 (188)
T ss_dssp EEEEEEETTTBSTHHH-HHHHHHHHH----TT-SEEEEEETCTSSHHHHHHHHHHHHHHHHHHTTSTTTSTEEEEEEBTT
T ss_pred cceeeeeccccccccc-ccccccccc----cccceEEeeeeccchhhhHHHHHHHHHHHhccccccCccccceEEEEecC
Confidence 9999999987643332 233333333 36899999999999731 1112222 1211111111 35899999999
Q ss_pred CCCCHHHHHHHHHHHHH
Q 029517 157 DGFGIKESVEWLVEVME 173 (192)
Q Consensus 157 ~~~gi~e~~~~i~~~i~ 173 (192)
+|.|++++++.|.+.++
T Consensus 171 ~g~gi~~Ll~~l~~~~P 187 (188)
T PF00009_consen 171 TGDGIDELLEALVELLP 187 (188)
T ss_dssp TTBTHHHHHHHHHHHS-
T ss_pred CCCCHHHHHHHHHHhCc
Confidence 99999999999988764
No 171
>PRK15467 ethanolamine utilization protein EutP; Provisional
Probab=99.69 E-value=7.8e-17 Score=115.46 Aligned_cols=106 Identities=13% Similarity=0.142 Sum_probs=75.2
Q ss_pred EEeCCCCc----ccHHHHHHhhhcCCEEEEEEeCCCcccHHHHHHHHHHHHhCCCCCCCcEEEEEeCCCCCCCCCHHHHH
Q 029517 60 FWDLGGQP----GLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAVSADELA 135 (192)
Q Consensus 60 i~D~~G~~----~~~~~~~~~~~~~d~ii~v~D~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~~~~~~~~~ 135 (192)
+|||||.. ++.......++++|++++|+|+++..++.. .|+..+ . .+.|+++++||+|+.. ...+.+.
T Consensus 41 ~iDtpG~~~~~~~~~~~~~~~~~~ad~il~v~d~~~~~s~~~--~~~~~~---~--~~~~ii~v~nK~Dl~~-~~~~~~~ 112 (158)
T PRK15467 41 DIDTPGEYFSHPRWYHALITTLQDVDMLIYVHGANDPESRLP--AGLLDI---G--VSKRQIAVISKTDMPD-ADVAATR 112 (158)
T ss_pred cccCCccccCCHHHHHHHHHHHhcCCEEEEEEeCCCcccccC--HHHHhc---c--CCCCeEEEEEccccCc-ccHHHHH
Confidence 69999973 222222334789999999999998766532 344333 1 3579999999999865 3456666
Q ss_pred hHcCccccCCcceEEEEeeecCCCCHHHHHHHHHHHHHhcc
Q 029517 136 RYLDLKKLDERVCMFEAVSGYDGFGIKESVEWLVEVMERSK 176 (192)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~Sa~~~~gi~e~~~~i~~~i~~~~ 176 (192)
++++.. ....+++++||++|+||+++|+++.+.+....
T Consensus 113 ~~~~~~---~~~~p~~~~Sa~~g~gi~~l~~~l~~~~~~~~ 150 (158)
T PRK15467 113 KLLLET---GFEEPIFELNSHDPQSVQQLVDYLASLTKQEE 150 (158)
T ss_pred HHHHHc---CCCCCEEEEECCCccCHHHHHHHHHHhchhhh
Confidence 655411 11258999999999999999999988775543
No 172
>PRK05433 GTP-binding protein LepA; Provisional
Probab=99.69 E-value=6e-16 Score=131.48 Aligned_cols=112 Identities=20% Similarity=0.218 Sum_probs=85.1
Q ss_pred cCEEEEEEeCCCCcccHHHHHHhhhcCCEEEEEEeCCCcccHHHHHHHHHHHHhCCCCCCCcEEEEEeCCCCCCCCCH--
Q 029517 54 SNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAVSA-- 131 (192)
Q Consensus 54 ~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ii~v~D~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~~~~~-- 131 (192)
..+.+++|||||+.+|...+..+++.||++|+|+|+++....+....|.... . .+.|+++|+||+|+......
T Consensus 72 ~~~~lnLiDTPGh~dF~~~v~~sl~~aD~aILVVDas~gv~~qt~~~~~~~~-~----~~lpiIvViNKiDl~~a~~~~v 146 (600)
T PRK05433 72 ETYILNLIDTPGHVDFSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLAL-E----NDLEIIPVLNKIDLPAADPERV 146 (600)
T ss_pred CcEEEEEEECCCcHHHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHH-H----CCCCEEEEEECCCCCcccHHHH
Confidence 3689999999999999999999999999999999999876665554443322 1 36899999999998754322
Q ss_pred -HHHHhHcCccccCCcceEEEEeeecCCCCHHHHHHHHHHHHHhc
Q 029517 132 -DELARYLDLKKLDERVCMFEAVSGYDGFGIKESVEWLVEVMERS 175 (192)
Q Consensus 132 -~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~e~~~~i~~~i~~~ 175 (192)
+++.+.+. .....++++||++|.|+++++++|.+.+...
T Consensus 147 ~~ei~~~lg-----~~~~~vi~iSAktG~GI~~Ll~~I~~~lp~P 186 (600)
T PRK05433 147 KQEIEDVIG-----IDASDAVLVSAKTGIGIEEVLEAIVERIPPP 186 (600)
T ss_pred HHHHHHHhC-----CCcceEEEEecCCCCCHHHHHHHHHHhCccc
Confidence 23333322 1123589999999999999999999877543
No 173
>cd01895 EngA2 EngA2 subfamily. This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.69 E-value=1.7e-15 Score=109.10 Aligned_cols=146 Identities=22% Similarity=0.180 Sum_probs=91.1
Q ss_pred ccccHHHHHHHHhhhhccCCCCCCCCCCCCcceEEEEEEecCEEEEEEeCCCCccc----------H-HHHHHhhhcCCE
Q 029517 14 TKTEFHTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPGL----------R-SIWEKYYEEAHA 82 (192)
Q Consensus 14 kst~~~~l~~~~~~~~~~~~~~~~~~~~~T~g~~~~~~~~~~~~~~i~D~~G~~~~----------~-~~~~~~~~~~d~ 82 (192)
|||++|+|++.........+ ..|.......+...+..+.+|||||.... . .....++..+|+
T Consensus 15 Kstli~~l~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~e~~~~~~~~~~~~~~d~ 87 (174)
T cd01895 15 KSSLVNALLGEERVIVSDIA-------GTTRDSIDVPFEYDGKKYTLIDTAGIRRKGKVEEGIEKYSVLRTLKAIERADV 87 (174)
T ss_pred HHHHHHHHhCccceeccCCC-------CCccCceeeEEEECCeeEEEEECCCCccccchhccHHHHHHHHHHHHHhhcCe
Confidence 78889988765322111111 11222222334555677899999996432 1 112235678999
Q ss_pred EEEEEeCCCcccHHHHHHHHHHHHhCCCCCCCcEEEEEeCCCCCCC--CCHHHHHhHcCccccCCcceEEEEeeecCCCC
Q 029517 83 VVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDA--VSADELARYLDLKKLDERVCMFEAVSGYDGFG 160 (192)
Q Consensus 83 ii~v~D~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~g 160 (192)
+++|+|++++.+.... .++..+.. .+.|+++++||+|+... ...+.+.+.+..........+++++||+++.|
T Consensus 88 vi~v~d~~~~~~~~~~-~~~~~~~~----~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~ 162 (174)
T cd01895 88 VLLVIDATEGITEQDL-RIAGLILE----EGKALVIVVNKWDLVEKDSKTMKEFKKEIRRKLPFLDYAPIVFISALTGQG 162 (174)
T ss_pred EEEEEeCCCCcchhHH-HHHHHHHh----cCCCEEEEEeccccCCccHHHHHHHHHHHHhhcccccCCceEEEeccCCCC
Confidence 9999999988765543 22222222 36899999999999764 33333333333110011247899999999999
Q ss_pred HHHHHHHHHHH
Q 029517 161 IKESVEWLVEV 171 (192)
Q Consensus 161 i~e~~~~i~~~ 171 (192)
++++++++.+.
T Consensus 163 i~~~~~~l~~~ 173 (174)
T cd01895 163 VDKLFDAIDEV 173 (174)
T ss_pred HHHHHHHHHHh
Confidence 99999998763
No 174
>PRK04213 GTP-binding protein; Provisional
Probab=99.69 E-value=8.3e-16 Score=114.18 Aligned_cols=147 Identities=24% Similarity=0.266 Sum_probs=86.4
Q ss_pred ccccHHHHHHHHhhhhccCCCCCCCCCCCCcceEEEEEEecCEEEEEEeCCC-----------CcccHHHHHHhhh----
Q 029517 14 TKTEFHTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGG-----------QPGLRSIWEKYYE---- 78 (192)
Q Consensus 14 kst~~~~l~~~~~~~~~~~~~~~~~~~~~T~g~~~~~~~~~~~~~~i~D~~G-----------~~~~~~~~~~~~~---- 78 (192)
|||++|+|.+. .+...+.|+.+.....+... .+.+||||| ++.++..+..+++
T Consensus 22 KSsLin~l~~~----------~~~~~~~~~~t~~~~~~~~~--~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (201)
T PRK04213 22 KSTLVRELTGK----------KVRVGKRPGVTRKPNHYDWG--DFILTDLPGFGFMSGVPKEVQEKIKDEIVRYIEDNAD 89 (201)
T ss_pred HHHHHHHHhCC----------CCccCCCCceeeCceEEeec--ceEEEeCCccccccccCHHHHHHHHHHHHHHHHhhhh
Confidence 67777777532 12222334333333333333 689999999 4667766666664
Q ss_pred cCCEEEEEEeCCCcccH-HH--------HHHHHHHHHhCCCCCCCcEEEEEeCCCCCCCC--CHHHHHhHcCcc-ccCCc
Q 029517 79 EAHAVVFVIDAACPSRF-ED--------SKTALEKVLRNEDLQGAPLLILANKQDLPDAV--SADELARYLDLK-KLDER 146 (192)
Q Consensus 79 ~~d~ii~v~D~~~~~s~-~~--------~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~~~--~~~~~~~~~~~~-~~~~~ 146 (192)
.++++++|+|++....+ +. ....+...... .++|+++|+||+|+.+.. ..+++.+.+... .....
T Consensus 90 ~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~ 166 (201)
T PRK04213 90 RILAAVLVVDGKSFIEIIERWEGRGEIPIDVEMFDFLRE---LGIPPIVAVNKMDKIKNRDEVLDEIAERLGLYPPWRQW 166 (201)
T ss_pred hheEEEEEEeCccccccccccccCCCcHHHHHHHHHHHH---cCCCeEEEEECccccCcHHHHHHHHHHHhcCCcccccc
Confidence 35788899998653221 00 00111222222 468999999999986532 122333333310 00001
Q ss_pred ceEEEEeeecCCCCHHHHHHHHHHHHHhcc
Q 029517 147 VCMFEAVSGYDGFGIKESVEWLVEVMERSK 176 (192)
Q Consensus 147 ~~~~~~~Sa~~~~gi~e~~~~i~~~i~~~~ 176 (192)
+.+++++||++| ||++++++|.+.+....
T Consensus 167 ~~~~~~~SA~~g-gi~~l~~~l~~~~~~~~ 195 (201)
T PRK04213 167 QDIIAPISAKKG-GIEELKEAIRKRLHEAK 195 (201)
T ss_pred CCcEEEEecccC-CHHHHHHHHHHhhcCcc
Confidence 236899999999 99999999998875544
No 175
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.68 E-value=9.2e-16 Score=126.38 Aligned_cols=142 Identities=25% Similarity=0.328 Sum_probs=96.7
Q ss_pred hccccHHHHHHHHhhhhccCCCCCCCCCCCCcceEEEEEEecCEEEEEEeCCCC--------cccHHHHHHhhhcCCEEE
Q 029517 13 FTKTEFHTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQ--------PGLRSIWEKYYEEAHAVV 84 (192)
Q Consensus 13 ~kst~~~~l~~~~~~~~~~~~~~~~~~~~~T~g~~~~~~~~~~~~~~i~D~~G~--------~~~~~~~~~~~~~~d~ii 84 (192)
=|||++|+|+++......+.++.+ ....+......+..+.+|||||. +.+......+++.+|+++
T Consensus 11 GKStL~n~l~~~~~~~v~~~~g~t-------~d~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~ad~vl 83 (429)
T TIGR03594 11 GKSTLFNRLTGKRDAIVSDTPGVT-------RDRKYGDAEWGGREFILIDTGGIEEDDDGLDKQIREQAEIAIEEADVIL 83 (429)
T ss_pred CHHHHHHHHhCCCcceecCCCCcc-------cCceEEEEEECCeEEEEEECCCCCCcchhHHHHHHHHHHHHHhhCCEEE
Confidence 489999999876544333333322 23334556667788999999996 334455667789999999
Q ss_pred EEEeCCCcccHHHHHHHHHHHHhCCCCCCCcEEEEEeCCCCCCCCCHHHHHhHcCccccCCcce-EEEEeeecCCCCHHH
Q 029517 85 FVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAVSADELARYLDLKKLDERVC-MFEAVSGYDGFGIKE 163 (192)
Q Consensus 85 ~v~D~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~gi~e 163 (192)
+|+|+++..+... ..+..+++. .++|+++|+||+|+..... ...+... .++ +++++||++|.|+.+
T Consensus 84 ~vvD~~~~~~~~d--~~i~~~l~~---~~~piilVvNK~D~~~~~~--~~~~~~~------lg~~~~~~vSa~~g~gv~~ 150 (429)
T TIGR03594 84 FVVDGREGLTPED--EEIAKWLRK---SGKPVILVANKIDGKKEDA--VAAEFYS------LGFGEPIPISAEHGRGIGD 150 (429)
T ss_pred EEEeCCCCCCHHH--HHHHHHHHH---hCCCEEEEEECccCCcccc--cHHHHHh------cCCCCeEEEeCCcCCChHH
Confidence 9999987544432 222233332 3689999999999875321 1222222 233 689999999999999
Q ss_pred HHHHHHHHHHh
Q 029517 164 SVEWLVEVMER 174 (192)
Q Consensus 164 ~~~~i~~~i~~ 174 (192)
+++++.+.+..
T Consensus 151 ll~~i~~~l~~ 161 (429)
T TIGR03594 151 LLDAILELLPE 161 (429)
T ss_pred HHHHHHHhcCc
Confidence 99999987754
No 176
>PRK12298 obgE GTPase CgtA; Reviewed
Probab=99.68 E-value=6.7e-16 Score=125.00 Aligned_cols=151 Identities=22% Similarity=0.290 Sum_probs=101.7
Q ss_pred ccccHHHHHHHHhhhhccCCCCCCCCCCCCcceEEEEEEecC-EEEEEEeCCCCcc-------cHHHHHHhhhcCCEEEE
Q 029517 14 TKTEFHTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSN-SKLVFWDLGGQPG-------LRSIWEKYYEEAHAVVF 85 (192)
Q Consensus 14 kst~~~~l~~~~~~~~~~~~~~~~~~~~~T~g~~~~~~~~~~-~~~~i~D~~G~~~-------~~~~~~~~~~~~d~ii~ 85 (192)
|||++|+|.++. +.+++++.++..|..|+ +.... ..+.++||||... .......+++.++++++
T Consensus 172 KSTLln~Lt~~k----~~vs~~p~TT~~p~~Gi----v~~~~~~~i~~vDtPGi~~~a~~~~~Lg~~~l~~i~radvlL~ 243 (390)
T PRK12298 172 KSTFIRAVSAAK----PKVADYPFTTLVPNLGV----VRVDDERSFVVADIPGLIEGASEGAGLGIRFLKHLERCRVLLH 243 (390)
T ss_pred HHHHHHHHhCCc----ccccCCCCCccCcEEEE----EEeCCCcEEEEEeCCCccccccchhhHHHHHHHHHHhCCEEEE
Confidence 788888887643 35566666666665554 54443 4699999999532 12223346889999999
Q ss_pred EEeCC---CcccHHHHHHHHHHHHhCC-CCCCCcEEEEEeCCCCCCCCCHHH-HHhHcCccccCCcceEEEEeeecCCCC
Q 029517 86 VIDAA---CPSRFEDSKTALEKVLRNE-DLQGAPLLILANKQDLPDAVSADE-LARYLDLKKLDERVCMFEAVSGYDGFG 160 (192)
Q Consensus 86 v~D~~---~~~s~~~~~~~~~~i~~~~-~~~~~piiiv~nK~Dl~~~~~~~~-~~~~~~~~~~~~~~~~~~~~Sa~~~~g 160 (192)
|+|++ ..+.++....|+..+.... ...++|+++|+||+|+.......+ +.++.+. .....+++++||+++.|
T Consensus 244 VVD~s~~~~~d~~e~~~~l~~eL~~~~~~L~~kP~IlVlNKiDl~~~~el~~~l~~l~~~---~~~~~~Vi~ISA~tg~G 320 (390)
T PRK12298 244 LIDIAPIDGSDPVENARIIINELEKYSPKLAEKPRWLVFNKIDLLDEEEAEERAKAIVEA---LGWEGPVYLISAASGLG 320 (390)
T ss_pred EeccCcccccChHHHHHHHHHHHHhhhhhhcCCCEEEEEeCCccCChHHHHHHHHHHHHH---hCCCCCEEEEECCCCcC
Confidence 99988 4456677777777766542 124689999999999865322222 2222220 01123689999999999
Q ss_pred HHHHHHHHHHHHHhc
Q 029517 161 IKESVEWLVEVMERS 175 (192)
Q Consensus 161 i~e~~~~i~~~i~~~ 175 (192)
+++++++|.+.+...
T Consensus 321 IdeLl~~I~~~L~~~ 335 (390)
T PRK12298 321 VKELCWDLMTFIEEN 335 (390)
T ss_pred HHHHHHHHHHHhhhC
Confidence 999999999988653
No 177
>PRK11058 GTPase HflX; Provisional
Probab=99.67 E-value=1.9e-15 Score=123.60 Aligned_cols=145 Identities=20% Similarity=0.153 Sum_probs=90.7
Q ss_pred ccccHHHHHHHHhhhhccCCCCCCCCCCCCcceEEEEEEecCE-EEEEEeCCCCccc--HHHH------HHhhhcCCEEE
Q 029517 14 TKTEFHTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNS-KLVFWDLGGQPGL--RSIW------EKYYEEAHAVV 84 (192)
Q Consensus 14 kst~~~~l~~~~~~~~~~~~~~~~~~~~~T~g~~~~~~~~~~~-~~~i~D~~G~~~~--~~~~------~~~~~~~d~ii 84 (192)
|||+||+|.+.-.. +.+.+. .|.......+...+. .+.+|||+|..+. ...+ ...++.+|+++
T Consensus 210 KSSLlN~Lt~~~~~----v~~~~~----tTld~~~~~i~l~~~~~~~l~DTaG~~r~lp~~lve~f~~tl~~~~~ADlIL 281 (426)
T PRK11058 210 KSTLFNRITEARVY----AADQLF----ATLDPTLRRIDVADVGETVLADTVGFIRHLPHDLVAAFKATLQETRQATLLL 281 (426)
T ss_pred HHHHHHHHhCCcee----eccCCC----CCcCCceEEEEeCCCCeEEEEecCcccccCCHHHHHHHHHHHHHhhcCCEEE
Confidence 67888877653211 222222 333333334444433 7889999997431 2222 23468899999
Q ss_pred EEEeCCCcccHHHHHHHHHHHHhCCCCCCCcEEEEEeCCCCCCCCCHHHHHhHcCccccCCcceE-EEEeeecCCCCHHH
Q 029517 85 FVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAVSADELARYLDLKKLDERVCM-FEAVSGYDGFGIKE 163 (192)
Q Consensus 85 ~v~D~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~-~~~~Sa~~~~gi~e 163 (192)
+|+|++++.+++.+..|...+.... ..++|+++|+||+|+..... ..... .. .+.+ ++++||++|.|+++
T Consensus 282 ~VvDaS~~~~~e~l~~v~~iL~el~-~~~~pvIiV~NKiDL~~~~~-~~~~~-~~------~~~~~~v~ISAktG~GIde 352 (426)
T PRK11058 282 HVVDAADVRVQENIEAVNTVLEEID-AHEIPTLLVMNKIDMLDDFE-PRIDR-DE------ENKPIRVWLSAQTGAGIPL 352 (426)
T ss_pred EEEeCCCccHHHHHHHHHHHHHHhc-cCCCCEEEEEEcccCCCchh-HHHHH-Hh------cCCCceEEEeCCCCCCHHH
Confidence 9999999887776654433333322 14789999999999864211 11111 11 1223 57899999999999
Q ss_pred HHHHHHHHHHhc
Q 029517 164 SVEWLVEVMERS 175 (192)
Q Consensus 164 ~~~~i~~~i~~~ 175 (192)
++++|.+.+...
T Consensus 353 L~e~I~~~l~~~ 364 (426)
T PRK11058 353 LFQALTERLSGE 364 (426)
T ss_pred HHHHHHHHhhhc
Confidence 999999988643
No 178
>TIGR00475 selB selenocysteine-specific elongation factor SelB. In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes the elongation factor SelB, a close homolog rf EF-Tu. It may function by replacing EF-Tu. A C-terminal domain not found in EF-Tu is in all SelB sequences in the seed alignment except that from Methanococcus jannaschii. This model does not find an equivalent protein for eukaryotes.
Probab=99.67 E-value=6.5e-16 Score=131.01 Aligned_cols=150 Identities=19% Similarity=0.160 Sum_probs=101.3
Q ss_pred ccccHHHHHHHHhhhhccCCCCCCCCCCC--CcceEEEEEEecCEEEEEEeCCCCcccHHHHHHhhhcCCEEEEEEeCCC
Q 029517 14 TKTEFHTLLEKLKSVYSNVEGLPPDRIVP--TVGLNIGRIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAAC 91 (192)
Q Consensus 14 kst~~~~l~~~~~~~~~~~~~~~~~~~~~--T~g~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ii~v~D~~~ 91 (192)
|||++++|.+... +.+.+++.+ |+...+..+..++..+.+||+||+++|.......+.++|++++|+|+++
T Consensus 13 KTTLi~aLtg~~~-------d~~~eE~~rGiTid~~~~~~~~~~~~v~~iDtPGhe~f~~~~~~g~~~aD~aILVVDa~~ 85 (581)
T TIGR00475 13 KTTLLKALTGIAA-------DRLPEEKKRGMTIDLGFAYFPLPDYRLGFIDVPGHEKFISNAIAGGGGIDAALLVVDADE 85 (581)
T ss_pred HHHHHHHHhCccC-------cCChhHhcCCceEEeEEEEEEeCCEEEEEEECCCHHHHHHHHHhhhccCCEEEEEEECCC
Confidence 7888888875431 233333344 4455555677677899999999999998888888999999999999987
Q ss_pred cccHHHHHHHHHHHHhCCCCCCCc-EEEEEeCCCCCCCCC----HHHHHhHcCccccCCcceEEEEeeecCCCCHHHHHH
Q 029517 92 PSRFEDSKTALEKVLRNEDLQGAP-LLILANKQDLPDAVS----ADELARYLDLKKLDERVCMFEAVSGYDGFGIKESVE 166 (192)
Q Consensus 92 ~~s~~~~~~~~~~i~~~~~~~~~p-iiiv~nK~Dl~~~~~----~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~e~~~ 166 (192)
....+ ..+.+. +... .++| +++++||+|+.+... .+++.+++..... ..+.+++++||++|.|++++++
T Consensus 86 G~~~q-T~ehl~-il~~---lgi~~iIVVlNK~Dlv~~~~~~~~~~ei~~~l~~~~~-~~~~~ii~vSA~tG~GI~eL~~ 159 (581)
T TIGR00475 86 GVMTQ-TGEHLA-VLDL---LGIPHTIVVITKADRVNEEEIKRTEMFMKQILNSYIF-LKNAKIFKTSAKTGQGIGELKK 159 (581)
T ss_pred CCcHH-HHHHHH-HHHH---cCCCeEEEEEECCCCCCHHHHHHHHHHHHHHHHHhCC-CCCCcEEEEeCCCCCCchhHHH
Confidence 43222 122222 2222 3577 999999999975321 1233333321000 1257899999999999999999
Q ss_pred HHHHHHHhcc
Q 029517 167 WLVEVMERSK 176 (192)
Q Consensus 167 ~i~~~i~~~~ 176 (192)
+|.+.+....
T Consensus 160 ~L~~l~~~~~ 169 (581)
T TIGR00475 160 ELKNLLESLD 169 (581)
T ss_pred HHHHHHHhCC
Confidence 9987665543
No 179
>COG1100 GTPase SAR1 and related small G proteins [General function prediction only]
Probab=99.67 E-value=2.4e-15 Score=112.97 Aligned_cols=148 Identities=28% Similarity=0.334 Sum_probs=109.2
Q ss_pred HHHHHHhhhhccCCCCCCCCCCCCcceEEEEEEe--c--CEEEEEEeCCCCcccHHHHHHhhhcCCEEEEEEeCCC-ccc
Q 029517 20 TLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEV--S--NSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAAC-PSR 94 (192)
Q Consensus 20 ~l~~~~~~~~~~~~~~~~~~~~~T~g~~~~~~~~--~--~~~~~i~D~~G~~~~~~~~~~~~~~~d~ii~v~D~~~-~~s 94 (192)
||++++.. +.+...+.||++..+..... . .+++.+|||+|+++|+..+..|+.+++++++|+|.++ ..+
T Consensus 20 tl~~~l~~------~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~Dt~gq~~~~~~~~~y~~~~~~~l~~~d~~~~~~~ 93 (219)
T COG1100 20 TLLNRLVG------DEFPEGYPPTIGNLDPAKTIEPYRRNIKLQLWDTAGQEEYRSLRPEYYRGANGILIVYDSTLRESS 93 (219)
T ss_pred HHHHHHhc------CcCcccCCCceeeeeEEEEEEeCCCEEEEEeecCCCHHHHHHHHHHHhcCCCEEEEEEecccchhh
Confidence 55556665 67778889999887765332 1 5679999999999999999999999999999999998 555
Q ss_pred HHHHHHHHHHHHhCCCCCCCcEEEEEeCCCCCCCCC-HHHH-------------HhHcCccccCCcceEEEEeeec--CC
Q 029517 95 FEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAVS-ADEL-------------ARYLDLKKLDERVCMFEAVSGY--DG 158 (192)
Q Consensus 95 ~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~~~~-~~~~-------------~~~~~~~~~~~~~~~~~~~Sa~--~~ 158 (192)
.+....|...+..... ...|+++++||+|+..... ...+ ...... .......++++|++ .+
T Consensus 94 ~~~~~~~~~~l~~~~~-~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~s~~~~~~ 170 (219)
T COG1100 94 DELTEEWLEELRELAP-DDVPILLVGNKIDLFDEQSSSEEILNQLNREVVLLVLAPKAVL--PEVANPALLETSAKSLTG 170 (219)
T ss_pred hHHHHHHHHHHHHhCC-CCceEEEEecccccccchhHHHHHHhhhhcCcchhhhHhHHhh--hhhcccceeEeecccCCC
Confidence 6666778777776642 3689999999999976321 1111 111110 01123348999999 99
Q ss_pred CCHHHHHHHHHHHHHhcc
Q 029517 159 FGIKESVEWLVEVMERSK 176 (192)
Q Consensus 159 ~gi~e~~~~i~~~i~~~~ 176 (192)
.||+++|.++.+.+....
T Consensus 171 ~~v~~~~~~~~~~~~~~~ 188 (219)
T COG1100 171 PNVNELFKELLRKLLEEI 188 (219)
T ss_pred cCHHHHHHHHHHHHHHhh
Confidence 999999999999886543
No 180
>cd04105 SR_beta Signal recognition particle receptor, beta subunit (SR-beta). SR-beta and SR-alpha form the heterodimeric signal recognition particle (SRP or SR) receptor that binds SRP to regulate protein translocation across the ER membrane. Nascent polypeptide chains are synthesized with an N-terminal hydrophobic signal sequence that binds SRP54, a component of the SRP. SRP directs targeting of the ribosome-nascent chain complex (RNC) to the ER membrane via interaction with the SR, which is localized to the ER membrane. The RNC is then transferred to the protein-conducting channel, or translocon, which facilitates polypeptide translation across the ER membrane or integration into the ER membrane. SR-beta is found only in eukaryotes; it is believed to control the release of the signal sequence from SRP54 upon binding of the ribosome to the translocon. High expression of SR-beta has been observed in human colon cancer, suggesting it may play a role in the development of this typ
Probab=99.67 E-value=3.4e-15 Score=111.23 Aligned_cols=117 Identities=29% Similarity=0.364 Sum_probs=88.3
Q ss_pred cCEEEEEEeCCCCcccHHHHHHhhhcC-CEEEEEEeCCCc-ccHHHHHHHHHHHHhCCC--CCCCcEEEEEeCCCCCCCC
Q 029517 54 SNSKLVFWDLGGQPGLRSIWEKYYEEA-HAVVFVIDAACP-SRFEDSKTALEKVLRNED--LQGAPLLILANKQDLPDAV 129 (192)
Q Consensus 54 ~~~~~~i~D~~G~~~~~~~~~~~~~~~-d~ii~v~D~~~~-~s~~~~~~~~~~i~~~~~--~~~~piiiv~nK~Dl~~~~ 129 (192)
....+.+||+||+.+++..+..+++.+ +++|+|+|+++. .++..+..++..+..... ..++|+++++||+|+..+.
T Consensus 46 ~~~~~~l~D~pG~~~~~~~~~~~~~~~~~~vV~VvD~~~~~~~~~~~~~~l~~il~~~~~~~~~~pvliv~NK~Dl~~a~ 125 (203)
T cd04105 46 KGKKFRLVDVPGHPKLRDKLLETLKNSAKGIVFVVDSATFQKNLKDVAEFLYDILTDLEKVKNKIPVLIACNKQDLFTAK 125 (203)
T ss_pred CCceEEEEECCCCHHHHHHHHHHHhccCCEEEEEEECccchhHHHHHHHHHHHHHHHHhhccCCCCEEEEecchhhcccC
Confidence 367899999999999999999999999 999999999987 678888888777654321 1479999999999987654
Q ss_pred CHHHHHhHcC-------------cc-------------c-------c--CCcceEEEEeeecCCC-CHHHHHHHHHH
Q 029517 130 SADELARYLD-------------LK-------------K-------L--DERVCMFEAVSGYDGF-GIKESVEWLVE 170 (192)
Q Consensus 130 ~~~~~~~~~~-------------~~-------------~-------~--~~~~~~~~~~Sa~~~~-gi~e~~~~i~~ 170 (192)
+.+.+.+.++ +. . + ....+.+.++|++.+. |+++..+||.+
T Consensus 126 ~~~~i~~~le~ei~~~~~~r~~~l~~~~~~~~~~~~~~~~~~~~f~f~~~~~~v~~~~~s~~~~~~~~~~~~~w~~~ 202 (203)
T cd04105 126 PAKKIKEQLEKELNTLRESRSKSLSSLDGDEGSKESLGDKGGKSFEFDQLEGKVEFLEGSVKVDGGGIDGWEEWIDE 202 (203)
T ss_pred CHHHHHHHHHHHHHHHHHHHhccccccccccccccccccccCcceeeccCceeEEEEEeEEecCCCChHhHHHHHhh
Confidence 4444333332 00 0 0 1236778999998876 69999999864
No 181
>TIGR00437 feoB ferrous iron transporter FeoB. FeoB (773 amino acids in E. coli), a cytoplasmic membrane protein required for iron(II) update, is encoded in an operon with FeoA (75 amino acids), which is also required, and is regulated by Fur. There appear to be two copies in Archaeoglobus fulgidus and Clostridium acetobutylicum.
Probab=99.66 E-value=6.8e-16 Score=131.03 Aligned_cols=139 Identities=19% Similarity=0.205 Sum_probs=91.7
Q ss_pred ccccHHHHHHHHhhhhccCCCCCCCCCCCCcceEEEEEEecCEEEEEEeCCCCcccHHH------HHHhh--hcCCEEEE
Q 029517 14 TKTEFHTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPGLRSI------WEKYY--EEAHAVVF 85 (192)
Q Consensus 14 kst~~~~l~~~~~~~~~~~~~~~~~~~~~T~g~~~~~~~~~~~~~~i~D~~G~~~~~~~------~~~~~--~~~d~ii~ 85 (192)
|||++|+|.+... ++.++ ...|.......+..++.++++|||||++++... ...++ +.+|++++
T Consensus 7 KSSL~N~Ltg~~~----~v~n~----pG~Tv~~~~~~i~~~~~~i~lvDtPG~~~~~~~s~~e~v~~~~l~~~~aDvvI~ 78 (591)
T TIGR00437 7 KSTLFNALTGANQ----TVGNW----PGVTVEKKEGKLGFQGEDIEIVDLPGIYSLTTFSLEEEVARDYLLNEKPDLVVN 78 (591)
T ss_pred HHHHHHHHhCCCC----eecCC----CCeEEEEEEEEEEECCeEEEEEECCCccccCccchHHHHHHHHHhhcCCCEEEE
Confidence 8888888865421 12221 123333334456667778999999998876432 33343 36899999
Q ss_pred EEeCCCcccHHHHHHHHHHHHhCCCCCCCcEEEEEeCCCCCCCCC-HHHHHhHcCccccCCcceEEEEeeecCCCCHHHH
Q 029517 86 VIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAVS-ADELARYLDLKKLDERVCMFEAVSGYDGFGIKES 164 (192)
Q Consensus 86 v~D~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~~~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~e~ 164 (192)
|+|+++.+ +...+..++.+ .++|+++++||+|+.+... ..+..+..+ ..+.+++++||++|.|++++
T Consensus 79 VvDat~le---r~l~l~~ql~~----~~~PiIIVlNK~Dl~~~~~i~~d~~~L~~-----~lg~pvv~tSA~tg~Gi~eL 146 (591)
T TIGR00437 79 VVDASNLE---RNLYLTLQLLE----LGIPMILALNLVDEAEKKGIRIDEEKLEE-----RLGVPVVPTSATEGRGIERL 146 (591)
T ss_pred EecCCcch---hhHHHHHHHHh----cCCCEEEEEehhHHHHhCCChhhHHHHHH-----HcCCCEEEEECCCCCCHHHH
Confidence 99998743 22333334433 3689999999999864221 122333332 33578999999999999999
Q ss_pred HHHHHHHH
Q 029517 165 VEWLVEVM 172 (192)
Q Consensus 165 ~~~i~~~i 172 (192)
++++.+..
T Consensus 147 ~~~i~~~~ 154 (591)
T TIGR00437 147 KDAIRKAI 154 (591)
T ss_pred HHHHHHHh
Confidence 99998754
No 182
>TIGR00487 IF-2 translation initiation factor IF-2. This model discriminates eubacterial (and mitochondrial) translation initiation factor 2 (IF-2), encoded by the infB gene in bacteria, from similar proteins in the Archaea and Eukaryotes. In the bacteria and in organelles, the initiator tRNA is charged with N-formyl-Met instead of Met. This translation factor acts in delivering the initator tRNA to the ribosome. It is one of a number of GTP-binding translation factors recognized by the pfam model GTP_EFTU.
Probab=99.66 E-value=2.3e-15 Score=127.38 Aligned_cols=121 Identities=21% Similarity=0.292 Sum_probs=83.3
Q ss_pred cceEEEEEEecCE-EEEEEeCCCCcccHHHHHHhhhcCCEEEEEEeCCCcccHHHHHHHHHHHHhCCCCCCCcEEEEEeC
Q 029517 44 VGLNIGRIEVSNS-KLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANK 122 (192)
Q Consensus 44 ~g~~~~~~~~~~~-~~~i~D~~G~~~~~~~~~~~~~~~d~ii~v~D~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK 122 (192)
+......+...+. .+.|||||||+.|..++...++.+|++++|+|+++....+.. +.+... .. .++|+++++||
T Consensus 122 ~~ig~~~v~~~~~~~i~~iDTPGhe~F~~~r~rga~~aDiaILVVda~dgv~~qT~-e~i~~~-~~---~~vPiIVviNK 196 (587)
T TIGR00487 122 QHIGAYHVENEDGKMITFLDTPGHEAFTSMRARGAKVTDIVVLVVAADDGVMPQTI-EAISHA-KA---ANVPIIVAINK 196 (587)
T ss_pred ecceEEEEEECCCcEEEEEECCCCcchhhHHHhhhccCCEEEEEEECCCCCCHhHH-HHHHHH-HH---cCCCEEEEEEC
Confidence 3333344444333 899999999999999999899999999999999865332222 222222 11 46899999999
Q ss_pred CCCCCCCCHHHHHhHcCccccC----CcceEEEEeeecCCCCHHHHHHHHHH
Q 029517 123 QDLPDAVSADELARYLDLKKLD----ERVCMFEAVSGYDGFGIKESVEWLVE 170 (192)
Q Consensus 123 ~Dl~~~~~~~~~~~~~~~~~~~----~~~~~~~~~Sa~~~~gi~e~~~~i~~ 170 (192)
+|+.+. ..+++.+.+...... ....+++++||++|.|+++++++|..
T Consensus 197 iDl~~~-~~e~v~~~L~~~g~~~~~~~~~~~~v~iSAktGeGI~eLl~~I~~ 247 (587)
T TIGR00487 197 IDKPEA-NPDRVKQELSEYGLVPEDWGGDTIFVPVSALTGDGIDELLDMILL 247 (587)
T ss_pred cccccC-CHHHHHHHHHHhhhhHHhcCCCceEEEEECCCCCChHHHHHhhhh
Confidence 999753 344444444311100 11357999999999999999999874
No 183
>cd00880 Era_like Era (E. coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se
Probab=99.66 E-value=3.5e-15 Score=105.53 Aligned_cols=146 Identities=26% Similarity=0.218 Sum_probs=94.7
Q ss_pred ccccHHHHHHHHhhhhccCCCCCCCCCCCCcceEEEEEEec-CEEEEEEeCCCCcccH-------HHHHHhhhcCCEEEE
Q 029517 14 TKTEFHTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVS-NSKLVFWDLGGQPGLR-------SIWEKYYEEAHAVVF 85 (192)
Q Consensus 14 kst~~~~l~~~~~~~~~~~~~~~~~~~~~T~g~~~~~~~~~-~~~~~i~D~~G~~~~~-------~~~~~~~~~~d~ii~ 85 (192)
|||++|+|.+..... .......|........... ...+.+||+||...+. .....+++.+|++++
T Consensus 9 Kstl~~~l~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~~~~~d~il~ 81 (163)
T cd00880 9 KSSLLNALLGQEVAI-------VSPVPGTTTDPVEYVWELGPLGPVVLIDTPGIDEAGGLGREREELARRVLERADLILF 81 (163)
T ss_pred HHHHHHHHhCccccc-------cCCCCCcEECCeEEEEEecCCCcEEEEECCCCCccccchhhHHHHHHHHHHhCCEEEE
Confidence 788888887643321 1111122333333334333 6689999999976543 244557889999999
Q ss_pred EEeCCCcccHHHHHHHHHHHHhCCCCCCCcEEEEEeCCCCCCCCCHHHHHhHcCccccCCcceEEEEeeecCCCCHHHHH
Q 029517 86 VIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAVSADELARYLDLKKLDERVCMFEAVSGYDGFGIKESV 165 (192)
Q Consensus 86 v~D~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~e~~ 165 (192)
|+|+++..+..... +...... ...|+++++||+|+..........+............+++++||+++.|+++++
T Consensus 82 v~~~~~~~~~~~~~-~~~~~~~----~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~v~~l~ 156 (163)
T cd00880 82 VVDADLRADEEEEK-LLELLRE----RGKPVLLVLNKIDLLPEEEEEELLELRLLILLLLLGLPVIAVSALTGEGIDELR 156 (163)
T ss_pred EEeCCCCCCHHHHH-HHHHHHh----cCCeEEEEEEccccCChhhHHHHHHHHHhhcccccCCceEEEeeeccCCHHHHH
Confidence 99999887666654 2222222 478999999999987644333332101111112457889999999999999999
Q ss_pred HHHHHH
Q 029517 166 EWLVEV 171 (192)
Q Consensus 166 ~~i~~~ 171 (192)
+++.+.
T Consensus 157 ~~l~~~ 162 (163)
T cd00880 157 EALIEA 162 (163)
T ss_pred HHHHhh
Confidence 999864
No 184
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=99.65 E-value=2.6e-15 Score=130.40 Aligned_cols=149 Identities=19% Similarity=0.223 Sum_probs=93.6
Q ss_pred ccccHHHHHHHHhhhhccCCCCCCCCCCCCcceEEEEEEecCEEEEEEeCCCCc----------ccHHH-HHHhhhcCCE
Q 029517 14 TKTEFHTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQP----------GLRSI-WEKYYEEAHA 82 (192)
Q Consensus 14 kst~~~~l~~~~~~~~~~~~~~~~~~~~~T~g~~~~~~~~~~~~~~i~D~~G~~----------~~~~~-~~~~~~~~d~ 82 (192)
|||++|+|++.-.....+.++.+ .......+...+..+.+|||||.. .|... ...+++.+|+
T Consensus 463 KSSLin~l~~~~~~~v~~~~gtT-------~d~~~~~~~~~~~~~~liDTaG~~~~~~~~~~~e~~~~~r~~~~i~~adv 535 (712)
T PRK09518 463 KSSLLNQLTHEERAVVNDLAGTT-------RDPVDEIVEIDGEDWLFIDTAGIKRRQHKLTGAEYYSSLRTQAAIERSEL 535 (712)
T ss_pred HHHHHHHHhCccccccCCCCCCC-------cCcceeEEEECCCEEEEEECCCcccCcccchhHHHHHHHHHHHHhhcCCE
Confidence 67777777655332222222222 222223344556678899999953 12221 2345789999
Q ss_pred EEEEEeCCCcccHHHHHHHHHHHHhCCCCCCCcEEEEEeCCCCCCCCCHHHHHhHcCccccCCcceEEEEeeecCCCCHH
Q 029517 83 VVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAVSADELARYLDLKKLDERVCMFEAVSGYDGFGIK 162 (192)
Q Consensus 83 ii~v~D~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~ 162 (192)
+++|+|+++..+.+... ++..+.. .++|+++|+||+|+.+....+.+.+.+..........+++.+||++|.|++
T Consensus 536 vilViDat~~~s~~~~~-i~~~~~~----~~~piIiV~NK~DL~~~~~~~~~~~~~~~~l~~~~~~~ii~iSAktg~gv~ 610 (712)
T PRK09518 536 ALFLFDASQPISEQDLK-VMSMAVD----AGRALVLVFNKWDLMDEFRRQRLERLWKTEFDRVTWARRVNLSAKTGWHTN 610 (712)
T ss_pred EEEEEECCCCCCHHHHH-HHHHHHH----cCCCEEEEEEchhcCChhHHHHHHHHHHHhccCCCCCCEEEEECCCCCCHH
Confidence 99999999888777654 3333332 368999999999997533323333222210001224567899999999999
Q ss_pred HHHHHHHHHHHh
Q 029517 163 ESVEWLVEVMER 174 (192)
Q Consensus 163 e~~~~i~~~i~~ 174 (192)
++++.+.+....
T Consensus 611 ~L~~~i~~~~~~ 622 (712)
T PRK09518 611 RLAPAMQEALES 622 (712)
T ss_pred HHHHHHHHHHHH
Confidence 999999987765
No 185
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=99.65 E-value=1.2e-15 Score=132.44 Aligned_cols=143 Identities=20% Similarity=0.240 Sum_probs=91.4
Q ss_pred hccccHHHHHHHHhhhhccCCCCCCCCCCCCcceEEEEEEecCEEEEEEeCCCCcc--------cHHHHHHhhhcCCEEE
Q 029517 13 FTKTEFHTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPG--------LRSIWEKYYEEAHAVV 84 (192)
Q Consensus 13 ~kst~~~~l~~~~~~~~~~~~~~~~~~~~~T~g~~~~~~~~~~~~~~i~D~~G~~~--------~~~~~~~~~~~~d~ii 84 (192)
=|||+||+|+++......+.++. |...........+..+.+|||||.+. +......+++.+|++|
T Consensus 287 GKSSL~n~l~~~~~~iv~~~pGv-------T~d~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~~~~~~~~~~~~aD~iL 359 (712)
T PRK09518 287 GKSTLVNRILGRREAVVEDTPGV-------TRDRVSYDAEWAGTDFKLVDTGGWEADVEGIDSAIASQAQIAVSLADAVV 359 (712)
T ss_pred CHHHHHHHHhCCCceeecCCCCe-------eEEEEEEEEEECCEEEEEEeCCCcCCCCccHHHHHHHHHHHHHHhCCEEE
Confidence 48899998886543322222221 22222233445578899999999653 3445566789999999
Q ss_pred EEEeCCCcccHHHHHHHHHHHHhCCCCCCCcEEEEEeCCCCCCCCCHHHHHhHcCccccCCcceEEEEeeecCCCCHHHH
Q 029517 85 FVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAVSADELARYLDLKKLDERVCMFEAVSGYDGFGIKES 164 (192)
Q Consensus 85 ~v~D~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~e~ 164 (192)
+|+|+++.-. .....+...++. .++|+++|+||+|+.... ....+...+ ..+ ..+++||++|.||+++
T Consensus 360 ~VvDa~~~~~--~~d~~i~~~Lr~---~~~pvIlV~NK~D~~~~~--~~~~~~~~l----g~~-~~~~iSA~~g~GI~eL 427 (712)
T PRK09518 360 FVVDGQVGLT--STDERIVRMLRR---AGKPVVLAVNKIDDQASE--YDAAEFWKL----GLG-EPYPISAMHGRGVGDL 427 (712)
T ss_pred EEEECCCCCC--HHHHHHHHHHHh---cCCCEEEEEECcccccch--hhHHHHHHc----CCC-CeEEEECCCCCCchHH
Confidence 9999976422 222222222332 479999999999986431 222222221 111 3468999999999999
Q ss_pred HHHHHHHHHh
Q 029517 165 VEWLVEVMER 174 (192)
Q Consensus 165 ~~~i~~~i~~ 174 (192)
+++|.+.+..
T Consensus 428 l~~i~~~l~~ 437 (712)
T PRK09518 428 LDEALDSLKV 437 (712)
T ss_pred HHHHHHhccc
Confidence 9999988755
No 186
>CHL00189 infB translation initiation factor 2; Provisional
Probab=99.65 E-value=3.9e-15 Score=128.02 Aligned_cols=113 Identities=18% Similarity=0.273 Sum_probs=81.2
Q ss_pred cCEEEEEEeCCCCcccHHHHHHhhhcCCEEEEEEeCCCcccHHHHHHHHHHHHhCCCCCCCcEEEEEeCCCCCCCCCHHH
Q 029517 54 SNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAVSADE 133 (192)
Q Consensus 54 ~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ii~v~D~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~~~~~~~ 133 (192)
....+.||||||++.|..++..+++.+|++|+|+|+++....+....+ ..+ .. .++|+++++||+|+... ..+.
T Consensus 293 ~~~kItfiDTPGhe~F~~mr~rg~~~aDiaILVVDA~dGv~~QT~E~I-~~~-k~---~~iPiIVViNKiDl~~~-~~e~ 366 (742)
T CHL00189 293 ENQKIVFLDTPGHEAFSSMRSRGANVTDIAILIIAADDGVKPQTIEAI-NYI-QA---ANVPIIVAINKIDKANA-NTER 366 (742)
T ss_pred CceEEEEEECCcHHHHHHHHHHHHHHCCEEEEEEECcCCCChhhHHHH-HHH-Hh---cCceEEEEEECCCcccc-CHHH
Confidence 358999999999999999999999999999999999875333322222 222 12 46899999999999753 2333
Q ss_pred HHhHcCcccc--C--CcceEEEEeeecCCCCHHHHHHHHHHHH
Q 029517 134 LARYLDLKKL--D--ERVCMFEAVSGYDGFGIKESVEWLVEVM 172 (192)
Q Consensus 134 ~~~~~~~~~~--~--~~~~~~~~~Sa~~~~gi~e~~~~i~~~i 172 (192)
+.+.+..... . ...++++++||++|.|+++++++|....
T Consensus 367 v~~eL~~~~ll~e~~g~~vpvv~VSAktG~GIdeLle~I~~l~ 409 (742)
T CHL00189 367 IKQQLAKYNLIPEKWGGDTPMIPISASQGTNIDKLLETILLLA 409 (742)
T ss_pred HHHHHHHhccchHhhCCCceEEEEECCCCCCHHHHHHhhhhhh
Confidence 3333221000 0 1136899999999999999999998754
No 187
>PRK00093 GTP-binding protein Der; Reviewed
Probab=99.65 E-value=1.7e-15 Score=125.05 Aligned_cols=150 Identities=23% Similarity=0.225 Sum_probs=93.7
Q ss_pred ccccHHHHHHHHhhhhccCCCCCCCCCCCCcceEEEEEEecCEEEEEEeCCCCcc----------cHH-HHHHhhhcCCE
Q 029517 14 TKTEFHTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPG----------LRS-IWEKYYEEAHA 82 (192)
Q Consensus 14 kst~~~~l~~~~~~~~~~~~~~~~~~~~~T~g~~~~~~~~~~~~~~i~D~~G~~~----------~~~-~~~~~~~~~d~ 82 (192)
|||++|+|++.-....+..++ .|.......+...+..+.+|||||..+ |.. ....+++.+|+
T Consensus 186 KStlin~ll~~~~~~~~~~~g-------tt~~~~~~~~~~~~~~~~lvDT~G~~~~~~~~~~~e~~~~~~~~~~~~~ad~ 258 (435)
T PRK00093 186 KSSLINALLGEERVIVSDIAG-------TTRDSIDTPFERDGQKYTLIDTAGIRRKGKVTEGVEKYSVIRTLKAIERADV 258 (435)
T ss_pred HHHHHHHHhCCCceeecCCCC-------ceEEEEEEEEEECCeeEEEEECCCCCCCcchhhHHHHHHHHHHHHHHHHCCE
Confidence 788888887643322222211 122211233455677899999999532 211 12346789999
Q ss_pred EEEEEeCCCcccHHHHHHHHHHHHhCCCCCCCcEEEEEeCCCCCCCCCHHHHHhHcCccccCCcceEEEEeeecCCCCHH
Q 029517 83 VVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAVSADELARYLDLKKLDERVCMFEAVSGYDGFGIK 162 (192)
Q Consensus 83 ii~v~D~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~ 162 (192)
+|+|+|++++.+.+... ++..+.+ .+.|+++++||+|+.+....+++.+.+..........+++++||++|.|++
T Consensus 259 ~ilViD~~~~~~~~~~~-i~~~~~~----~~~~~ivv~NK~Dl~~~~~~~~~~~~~~~~l~~~~~~~i~~~SA~~~~gv~ 333 (435)
T PRK00093 259 VLLVIDATEGITEQDLR-IAGLALE----AGRALVIVVNKWDLVDEKTMEEFKKELRRRLPFLDYAPIVFISALTGQGVD 333 (435)
T ss_pred EEEEEeCCCCCCHHHHH-HHHHHHH----cCCcEEEEEECccCCCHHHHHHHHHHHHHhcccccCCCEEEEeCCCCCCHH
Confidence 99999999886665532 2222222 368999999999987432223333322211011235789999999999999
Q ss_pred HHHHHHHHHHHhc
Q 029517 163 ESVEWLVEVMERS 175 (192)
Q Consensus 163 e~~~~i~~~i~~~ 175 (192)
++++++.+.....
T Consensus 334 ~l~~~i~~~~~~~ 346 (435)
T PRK00093 334 KLLEAIDEAYENA 346 (435)
T ss_pred HHHHHHHHHHHHH
Confidence 9999998766543
No 188
>PRK05306 infB translation initiation factor IF-2; Validated
Probab=99.64 E-value=4.1e-15 Score=128.84 Aligned_cols=120 Identities=23% Similarity=0.323 Sum_probs=83.7
Q ss_pred eEEEEEEecCEEEEEEeCCCCcccHHHHHHhhhcCCEEEEEEeCCCcccHHHHHHHHHHHHhCCCCCCCcEEEEEeCCCC
Q 029517 46 LNIGRIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDL 125 (192)
Q Consensus 46 ~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ii~v~D~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl 125 (192)
+....+...+..+.|||||||+.|..++...++.+|++|+|+|+++...-+....| ... .. .++|+++++||+|+
T Consensus 327 iga~~v~~~~~~ItfiDTPGhe~F~~m~~rga~~aDiaILVVdAddGv~~qT~e~i-~~a-~~---~~vPiIVviNKiDl 401 (787)
T PRK05306 327 IGAYQVETNGGKITFLDTPGHEAFTAMRARGAQVTDIVVLVVAADDGVMPQTIEAI-NHA-KA---AGVPIIVAINKIDK 401 (787)
T ss_pred ccEEEEEECCEEEEEEECCCCccchhHHHhhhhhCCEEEEEEECCCCCCHhHHHHH-HHH-Hh---cCCcEEEEEECccc
Confidence 33345555678899999999999999999899999999999999875322222222 222 11 46899999999999
Q ss_pred CCCCCHHHHHhHcCcccc--C--CcceEEEEeeecCCCCHHHHHHHHHHH
Q 029517 126 PDAVSADELARYLDLKKL--D--ERVCMFEAVSGYDGFGIKESVEWLVEV 171 (192)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~--~--~~~~~~~~~Sa~~~~gi~e~~~~i~~~ 171 (192)
.+. +.+.+...+..... . ...++++++||++|.||++++++|...
T Consensus 402 ~~a-~~e~V~~eL~~~~~~~e~~g~~vp~vpvSAktG~GI~eLle~I~~~ 450 (787)
T PRK05306 402 PGA-NPDRVKQELSEYGLVPEEWGGDTIFVPVSAKTGEGIDELLEAILLQ 450 (787)
T ss_pred ccc-CHHHHHHHHHHhcccHHHhCCCceEEEEeCCCCCCchHHHHhhhhh
Confidence 753 23333322210000 0 123789999999999999999999753
No 189
>TIGR00483 EF-1_alpha translation elongation factor EF-1 alpha. This model represents the counterpart of bacterial EF-Tu for the Archaea (aEF-1 alpha) and Eukaryotes (eEF-1 alpha). The trusted cutoff is set fairly high so that incomplete sequences will score between suggested and trusted cutoff levels.
Probab=99.63 E-value=1.5e-15 Score=124.96 Aligned_cols=122 Identities=14% Similarity=0.109 Sum_probs=81.9
Q ss_pred CCCcceEEEEEEecCEEEEEEeCCCCcccHHHHHHhhhcCCEEEEEEeCCCcccHHH--HHHHHHHHHhCCCCCCCcEEE
Q 029517 41 VPTVGLNIGRIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFED--SKTALEKVLRNEDLQGAPLLI 118 (192)
Q Consensus 41 ~~T~g~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ii~v~D~~~~~s~~~--~~~~~~~i~~~~~~~~~piii 118 (192)
..|+......+..+++.+.+|||||+++|.......++.+|++++|+|+++.++... ...++ .+.... ...|+++
T Consensus 70 g~Tid~~~~~~~~~~~~i~iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~t~~~~-~~~~~~--~~~~iIV 146 (426)
T TIGR00483 70 GVTIDVAHWKFETDKYEVTIVDCPGHRDFIKNMITGASQADAAVLVVAVGDGEFEVQPQTREHA-FLARTL--GINQLIV 146 (426)
T ss_pred CceEEEEEEEEccCCeEEEEEECCCHHHHHHHHHhhhhhCCEEEEEEECCCCCcccCCchHHHH-HHHHHc--CCCeEEE
Confidence 445555566677778999999999999887766667889999999999998743211 11111 122221 2358999
Q ss_pred EEeCCCCCCCCC------HHHHHhHcCccccCCcceEEEEeeecCCCCHHHHH
Q 029517 119 LANKQDLPDAVS------ADELARYLDLKKLDERVCMFEAVSGYDGFGIKESV 165 (192)
Q Consensus 119 v~nK~Dl~~~~~------~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~e~~ 165 (192)
++||+|+.+... .+++.++++........++++++||++|.|+.+++
T Consensus 147 viNK~Dl~~~~~~~~~~~~~ei~~~~~~~g~~~~~~~~i~iSA~~g~ni~~~~ 199 (426)
T TIGR00483 147 AINKMDSVNYDEEEFEAIKKEVSNLIKKVGYNPDTVPFIPISAWNGDNVIKKS 199 (426)
T ss_pred EEEChhccCccHHHHHHHHHHHHHHHHHcCCCcccceEEEeeccccccccccc
Confidence 999999964211 23444444322222235789999999999998744
No 190
>PRK00089 era GTPase Era; Reviewed
Probab=99.63 E-value=3e-15 Score=117.43 Aligned_cols=145 Identities=17% Similarity=0.199 Sum_probs=91.2
Q ss_pred ccccHHHHHHHHhhhhccCCCCCCCCCCCCcceEEEEEEecCEEEEEEeCCCCcccH--------HHHHHhhhcCCEEEE
Q 029517 14 TKTEFHTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPGLR--------SIWEKYYEEAHAVVF 85 (192)
Q Consensus 14 kst~~~~l~~~~~~~~~~~~~~~~~~~~~T~g~~~~~~~~~~~~~~i~D~~G~~~~~--------~~~~~~~~~~d~ii~ 85 (192)
|||++|+|+++..+..+..++++... ........+..+.+|||||..... ......+..+|++++
T Consensus 18 KSTLin~L~g~~~~~vs~~~~tt~~~-------i~~i~~~~~~qi~~iDTPG~~~~~~~l~~~~~~~~~~~~~~~D~il~ 90 (292)
T PRK00089 18 KSTLLNALVGQKISIVSPKPQTTRHR-------IRGIVTEDDAQIIFVDTPGIHKPKRALNRAMNKAAWSSLKDVDLVLF 90 (292)
T ss_pred HHHHHHHHhCCceeecCCCCCccccc-------EEEEEEcCCceEEEEECCCCCCchhHHHHHHHHHHHHHHhcCCEEEE
Confidence 89999999876544333322222111 111233345789999999964322 223345788999999
Q ss_pred EEeCCCcccHHHHHHHHHHHHhCCCCCCCcEEEEEeCCCCCC-CCCHH-HHHhHcCccccCCcceEEEEeeecCCCCHHH
Q 029517 86 VIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPD-AVSAD-ELARYLDLKKLDERVCMFEAVSGYDGFGIKE 163 (192)
Q Consensus 86 v~D~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~-~~~~~-~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~e 163 (192)
|+|+++. +.....++...... .+.|+++|+||+|+.. ..... .+.++.. .....+++++||+++.|+++
T Consensus 91 vvd~~~~--~~~~~~~i~~~l~~---~~~pvilVlNKiDl~~~~~~l~~~~~~l~~----~~~~~~i~~iSA~~~~gv~~ 161 (292)
T PRK00089 91 VVDADEK--IGPGDEFILEKLKK---VKTPVILVLNKIDLVKDKEELLPLLEELSE----LMDFAEIVPISALKGDNVDE 161 (292)
T ss_pred EEeCCCC--CChhHHHHHHHHhh---cCCCEEEEEECCcCCCCHHHHHHHHHHHHh----hCCCCeEEEecCCCCCCHHH
Confidence 9999873 22222333333332 3689999999999973 11122 2222222 11246799999999999999
Q ss_pred HHHHHHHHHHh
Q 029517 164 SVEWLVEVMER 174 (192)
Q Consensus 164 ~~~~i~~~i~~ 174 (192)
++++|.+.+..
T Consensus 162 L~~~L~~~l~~ 172 (292)
T PRK00089 162 LLDVIAKYLPE 172 (292)
T ss_pred HHHHHHHhCCC
Confidence 99999987754
No 191
>TIGR00491 aIF-2 translation initiation factor aIF-2/yIF-2. This model describes archaeal and eukaryotic orthologs of bacterial IF-2. Like IF-2, it helps convey the initiator tRNA to the ribosome, although the initiator is N-formyl-Met in bacteria and Met here. This protein is not closely related to the subunits of eIF-2 of eukaryotes, which is also involved in the initiation of translation. The aIF-2 of Methanococcus jannaschii contains a large intein interrupting a region of very strongly conserved sequence very near the amino end; this model does not correctly align the sequences from Methanococcus jannaschii and Pyrococcus horikoshii in this region.
Probab=99.63 E-value=5.3e-15 Score=125.05 Aligned_cols=107 Identities=19% Similarity=0.248 Sum_probs=75.4
Q ss_pred EEEEEeCCCCcccHHHHHHhhhcCCEEEEEEeCCCc---ccHHHHHHHHHHHHhCCCCCCCcEEEEEeCCCCCCCC----
Q 029517 57 KLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACP---SRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAV---- 129 (192)
Q Consensus 57 ~~~i~D~~G~~~~~~~~~~~~~~~d~ii~v~D~~~~---~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~~~---- 129 (192)
.+.+|||||++.|..++..+++.+|++++|+|+++. .+++.+. +... .++|+++++||+|+....
T Consensus 70 ~l~~iDTpG~e~f~~l~~~~~~~aD~~IlVvD~~~g~~~qt~e~i~-----~l~~---~~vpiIVv~NK~Dl~~~~~~~~ 141 (590)
T TIGR00491 70 GLLFIDTPGHEAFTNLRKRGGALADLAILIVDINEGFKPQTQEALN-----ILRM---YKTPFVVAANKIDRIPGWRSHE 141 (590)
T ss_pred cEEEEECCCcHhHHHHHHHHHhhCCEEEEEEECCcCCCHhHHHHHH-----HHHH---cCCCEEEEEECCCccchhhhcc
Confidence 388999999999999999999999999999999874 3333322 1222 368999999999986310
Q ss_pred ----------CHHHHH------------hHcCcccc----------CCcceEEEEeeecCCCCHHHHHHHHHHHH
Q 029517 130 ----------SADELA------------RYLDLKKL----------DERVCMFEAVSGYDGFGIKESVEWLVEVM 172 (192)
Q Consensus 130 ----------~~~~~~------------~~~~~~~~----------~~~~~~~~~~Sa~~~~gi~e~~~~i~~~i 172 (192)
..+.+. ++.+ ..+ .....+++++||++|+|++++.++|....
T Consensus 142 ~~~f~e~sak~~~~v~~~~~~~~~~lv~~l~~-~G~~~e~~~~i~~~~~~v~iVpVSA~tGeGideLl~~l~~l~ 215 (590)
T TIGR00491 142 GRPFMESFSKQEIQVQQNLDTKVYNLVIKLHE-EGFEAERFDRVTDFTKTVAIIPISAITGEGIPELLTMLAGLA 215 (590)
T ss_pred CchHHHHHHhhhHHHHHHHHHHHHHHHHHHHh-cCccHHhhhhhhhcCCCceEEEeecCCCCChhHHHHHHHHHH
Confidence 011111 1111 001 02257899999999999999999987543
No 192
>PRK12317 elongation factor 1-alpha; Reviewed
Probab=99.63 E-value=2.4e-15 Score=123.76 Aligned_cols=151 Identities=17% Similarity=0.129 Sum_probs=95.8
Q ss_pred ccccHHHHHHHHhhhhccC---------------------CCCCCC--CCCCCcceEEEEEEecCEEEEEEeCCCCcccH
Q 029517 14 TKTEFHTLLEKLKSVYSNV---------------------EGLPPD--RIVPTVGLNIGRIEVSNSKLVFWDLGGQPGLR 70 (192)
Q Consensus 14 kst~~~~l~~~~~~~~~~~---------------------~~~~~~--~~~~T~g~~~~~~~~~~~~~~i~D~~G~~~~~ 70 (192)
|||++++|++..-.+.... -+...+ ....|+...+..+..+++++.+|||||+++|.
T Consensus 19 KSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~Er~rG~T~d~~~~~~~~~~~~i~liDtpG~~~~~ 98 (425)
T PRK12317 19 KSTLVGRLLYETGAIDEHIIEELREEAKEKGKESFKFAWVMDRLKEERERGVTIDLAHKKFETDKYYFTIVDCPGHRDFV 98 (425)
T ss_pred hHHHHHHHHHHcCCcCHHHHHHHHHHHHhcCCcccchhhhhccCHhHhhcCccceeeeEEEecCCeEEEEEECCCcccch
Confidence 8999999997654432210 011111 33567777777788888999999999999887
Q ss_pred HHHHHhhhcCCEEEEEEeCCCcccHHHHHHHHHHHHhCCCCCCCcEEEEEeCCCCCCCCC------HHHHHhHcCccccC
Q 029517 71 SIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAVS------ADELARYLDLKKLD 144 (192)
Q Consensus 71 ~~~~~~~~~~d~ii~v~D~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~~~~------~~~~~~~~~~~~~~ 144 (192)
......++.+|++++|+|+++...+.....+...+.... ...|+++++||+|+.+... .+++.++++.....
T Consensus 99 ~~~~~~~~~aD~~ilVvDa~~~~~~~~~~~~~~~~~~~~--~~~~iivviNK~Dl~~~~~~~~~~~~~~i~~~l~~~g~~ 176 (425)
T PRK12317 99 KNMITGASQADAAVLVVAADDAGGVMPQTREHVFLARTL--GINQLIVAINKMDAVNYDEKRYEEVKEEVSKLLKMVGYK 176 (425)
T ss_pred hhHhhchhcCCEEEEEEEcccCCCCCcchHHHHHHHHHc--CCCeEEEEEEccccccccHHHHHHHHHHHHHHHHhhCCC
Confidence 766566789999999999987211211111122222221 2347999999999975211 12444444321222
Q ss_pred CcceEEEEeeecCCCCHHHHHH
Q 029517 145 ERVCMFEAVSGYDGFGIKESVE 166 (192)
Q Consensus 145 ~~~~~~~~~Sa~~~~gi~e~~~ 166 (192)
....+++++||++|.|+++.++
T Consensus 177 ~~~~~ii~iSA~~g~gi~~~~~ 198 (425)
T PRK12317 177 PDDIPFIPVSAFEGDNVVKKSE 198 (425)
T ss_pred cCcceEEEeecccCCCcccccc
Confidence 2246899999999999998553
No 193
>COG0486 ThdF Predicted GTPase [General function prediction only]
Probab=99.63 E-value=6.2e-15 Score=118.74 Aligned_cols=142 Identities=19% Similarity=0.262 Sum_probs=106.9
Q ss_pred hhccccHHHHHHHHhhhhccCCCCCCCCCCCCcceEEEEEEecCEEEEEEeCCCCcccHHH--------HHHhhhcCCEE
Q 029517 12 IFTKTEFHTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPGLRSI--------WEKYYEEAHAV 83 (192)
Q Consensus 12 ~~kst~~~~l~~~~~~~~~~~~~~~~~~~~~T~g~~~~~~~~~~~~~~i~D~~G~~~~~~~--------~~~~~~~~d~i 83 (192)
.=|||++|+|+++-.++++++++++++.. ...++.+++.+.+.||+|....... ....++.||.+
T Consensus 228 vGKSSLLNaL~~~d~AIVTdI~GTTRDvi-------ee~i~i~G~pv~l~DTAGiRet~d~VE~iGIeRs~~~i~~ADlv 300 (454)
T COG0486 228 VGKSSLLNALLGRDRAIVTDIAGTTRDVI-------EEDINLNGIPVRLVDTAGIRETDDVVERIGIERAKKAIEEADLV 300 (454)
T ss_pred CcHHHHHHHHhcCCceEecCCCCCccceE-------EEEEEECCEEEEEEecCCcccCccHHHHHHHHHHHHHHHhCCEE
Confidence 34899999999999999999999998886 5567888999999999995433222 23357889999
Q ss_pred EEEEeCCCcc-cHHHHHHHHHHHHhCCCCCCCcEEEEEeCCCCCCCCCHHHHHhHcCccccCCcceEEEEeeecCCCCHH
Q 029517 84 VFVIDAACPS-RFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAVSADELARYLDLKKLDERVCMFEAVSGYDGFGIK 162 (192)
Q Consensus 84 i~v~D~~~~~-s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~ 162 (192)
++|+|.+.+. ..+....+ ....+.|+++|.||.|+......+.. +.. .+.+++.+||++|.|++
T Consensus 301 L~v~D~~~~~~~~d~~~~~-------~~~~~~~~i~v~NK~DL~~~~~~~~~-~~~-------~~~~~i~iSa~t~~Gl~ 365 (454)
T COG0486 301 LFVLDASQPLDKEDLALIE-------LLPKKKPIIVVLNKADLVSKIELESE-KLA-------NGDAIISISAKTGEGLD 365 (454)
T ss_pred EEEEeCCCCCchhhHHHHH-------hcccCCCEEEEEechhcccccccchh-hcc-------CCCceEEEEecCccCHH
Confidence 9999999852 22221111 11257899999999999875443333 222 24578999999999999
Q ss_pred HHHHHHHHHHHhc
Q 029517 163 ESVEWLVEVMERS 175 (192)
Q Consensus 163 e~~~~i~~~i~~~ 175 (192)
.+.++|.+.+...
T Consensus 366 ~L~~~i~~~~~~~ 378 (454)
T COG0486 366 ALREAIKQLFGKG 378 (454)
T ss_pred HHHHHHHHHHhhc
Confidence 9999998877654
No 194
>COG1159 Era GTPase [General function prediction only]
Probab=99.62 E-value=5.6e-15 Score=112.93 Aligned_cols=149 Identities=17% Similarity=0.217 Sum_probs=103.7
Q ss_pred hhccccHHHHHHHHhhhhccCCCCCCCCCCCCcceEEEEEEecCEEEEEEeCCCCcc--------cHHHHHHhhhcCCEE
Q 029517 12 IFTKTEFHTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPG--------LRSIWEKYYEEAHAV 83 (192)
Q Consensus 12 ~~kst~~~~l~~~~~~~~~~~~~~~~~~~~~T~g~~~~~~~~~~~~~~i~D~~G~~~--------~~~~~~~~~~~~d~i 83 (192)
.=||||+|+|+++..+++++.+++++... -+-+..++.++.+.||||--. ........+..+|++
T Consensus 17 vGKSTLlN~l~G~KisIvS~k~QTTR~~I-------~GI~t~~~~QiIfvDTPGih~pk~~l~~~m~~~a~~sl~dvDli 89 (298)
T COG1159 17 VGKSTLLNALVGQKISIVSPKPQTTRNRI-------RGIVTTDNAQIIFVDTPGIHKPKHALGELMNKAARSALKDVDLI 89 (298)
T ss_pred CcHHHHHHHHhcCceEeecCCcchhhhhe-------eEEEEcCCceEEEEeCCCCCCcchHHHHHHHHHHHHHhccCcEE
Confidence 34899999999999999998888776663 222445678999999999321 111223356789999
Q ss_pred EEEEeCCCcccHHHHHHHHHHHHhCCCCCCCcEEEEEeCCCCCCCCC-HHHHHhHcCccccCCcceEEEEeeecCCCCHH
Q 029517 84 VFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAVS-ADELARYLDLKKLDERVCMFEAVSGYDGFGIK 162 (192)
Q Consensus 84 i~v~D~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~~~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~ 162 (192)
++|+|++.+..- -.+++-..+.. .+.|+++++||+|...... ...+.+.+.. ......++++||++|.|++
T Consensus 90 lfvvd~~~~~~~--~d~~il~~lk~---~~~pvil~iNKID~~~~~~~l~~~~~~~~~---~~~f~~ivpiSA~~g~n~~ 161 (298)
T COG1159 90 LFVVDADEGWGP--GDEFILEQLKK---TKTPVILVVNKIDKVKPKTVLLKLIAFLKK---LLPFKEIVPISALKGDNVD 161 (298)
T ss_pred EEEEeccccCCc--cHHHHHHHHhh---cCCCeEEEEEccccCCcHHHHHHHHHHHHh---hCCcceEEEeeccccCCHH
Confidence 999999874222 22333333333 3689999999999876433 2333333331 1223479999999999999
Q ss_pred HHHHHHHHHHHhc
Q 029517 163 ESVEWLVEVMERS 175 (192)
Q Consensus 163 e~~~~i~~~i~~~ 175 (192)
.+.+.+...+...
T Consensus 162 ~L~~~i~~~Lpeg 174 (298)
T COG1159 162 TLLEIIKEYLPEG 174 (298)
T ss_pred HHHHHHHHhCCCC
Confidence 9999998877643
No 195
>cd04163 Era Era subfamily. Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.
Probab=99.61 E-value=1.1e-14 Score=103.98 Aligned_cols=143 Identities=20% Similarity=0.208 Sum_probs=88.2
Q ss_pred ccccHHHHHHHHhhhhccCCCCCCCCCCCCcceEEEEEEecCEEEEEEeCCCCcccHH--------HHHHhhhcCCEEEE
Q 029517 14 TKTEFHTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPGLRS--------IWEKYYEEAHAVVF 85 (192)
Q Consensus 14 kst~~~~l~~~~~~~~~~~~~~~~~~~~~T~g~~~~~~~~~~~~~~i~D~~G~~~~~~--------~~~~~~~~~d~ii~ 85 (192)
|||++|+|+++........ ...+..............+.+|||||...... .....+..+|++++
T Consensus 16 Kttl~~~l~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~i~~ 88 (168)
T cd04163 16 KSTLLNALVGQKISIVSPK-------PQTTRNRIRGIYTDDDAQIIFVDTPGIHKPKKKLGERMVKAAWSALKDVDLVLF 88 (168)
T ss_pred HHHHHHHHhCCceEeccCC-------CCceeceEEEEEEcCCeEEEEEECCCCCcchHHHHHHHHHHHHHHHHhCCEEEE
Confidence 7888888876532211111 11122222223444568899999999754322 23445788999999
Q ss_pred EEeCCCcccHHHHHHHHHHHHhCCCCCCCcEEEEEeCCCCCC-CCCHHHHHhHcCccccCCcceEEEEeeecCCCCHHHH
Q 029517 86 VIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPD-AVSADELARYLDLKKLDERVCMFEAVSGYDGFGIKES 164 (192)
Q Consensus 86 v~D~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~e~ 164 (192)
|+|++++. .....++...... .+.|+++++||+|+.. .....+..+.+.. .....+++++|++++.|++++
T Consensus 89 v~d~~~~~--~~~~~~~~~~~~~---~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~---~~~~~~~~~~s~~~~~~~~~l 160 (168)
T cd04163 89 VVDASEPI--GEGDEFILELLKK---SKTPVILVLNKIDLVKDKEDLLPLLEKLKE---LGPFAEIFPISALKGENVDEL 160 (168)
T ss_pred EEECCCcc--CchHHHHHHHHHH---hCCCEEEEEEchhccccHHHHHHHHHHHHh---ccCCCceEEEEeccCCChHHH
Confidence 99998762 2222233232222 2589999999999873 2222333333331 122468899999999999999
Q ss_pred HHHHHHH
Q 029517 165 VEWLVEV 171 (192)
Q Consensus 165 ~~~i~~~ 171 (192)
+++|.+.
T Consensus 161 ~~~l~~~ 167 (168)
T cd04163 161 LEEIVKY 167 (168)
T ss_pred HHHHHhh
Confidence 9998764
No 196
>KOG3883 consensus Ras family small GTPase [Signal transduction mechanisms]
Probab=99.60 E-value=3.5e-14 Score=98.01 Aligned_cols=157 Identities=20% Similarity=0.304 Sum_probs=122.1
Q ss_pred cccHHHHHHHHhhhhccCCCCCCCCCCCCcceEEE-EEEe-c--CEEEEEEeCCCCccc-HHHHHHhhhcCCEEEEEEeC
Q 029517 15 KTEFHTLLEKLKSVYSNVEGLPPDRIVPTVGLNIG-RIEV-S--NSKLVFWDLGGQPGL-RSIWEKYYEEAHAVVFVIDA 89 (192)
Q Consensus 15 st~~~~l~~~~~~~~~~~~~~~~~~~~~T~g~~~~-~~~~-~--~~~~~i~D~~G~~~~-~~~~~~~~~~~d~ii~v~D~ 89 (192)
|-.--+++.|+.... ..+..++.||+...|. .++. . .-.+.++||.|...+ ..+-..|++-+|++++||++
T Consensus 19 ~VGKTaileQl~yg~----~~~~~e~~pTiEDiY~~svet~rgarE~l~lyDTaGlq~~~~eLprhy~q~aDafVLVYs~ 94 (198)
T KOG3883|consen 19 SVGKTAILEQLLYGN----HVPGTELHPTIEDIYVASVETDRGAREQLRLYDTAGLQGGQQELPRHYFQFADAFVLVYSP 94 (198)
T ss_pred cccHHHHHHHHHhcc----CCCCCccccchhhheeEeeecCCChhheEEEeecccccCchhhhhHhHhccCceEEEEecC
Confidence 333446777777633 2345677888886554 2332 1 237999999998776 45667889999999999999
Q ss_pred CCcccHHHHHHHHHHHHhCCCCCCCcEEEEEeCCCCCC--CCCHHHHHhHcCccccCCcceEEEEeeecCCCCHHHHHHH
Q 029517 90 ACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPD--AVSADELARYLDLKKLDERVCMFEAVSGYDGFGIKESVEW 167 (192)
Q Consensus 90 ~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~e~~~~ 167 (192)
.+++||+++..+...|.+..+...+||++++||+|+.+ .++.+-+..|++ .-.+..++++|++...+-|.|..
T Consensus 95 ~d~eSf~rv~llKk~Idk~KdKKEvpiVVLaN~rdr~~p~~vd~d~A~~Wa~-----rEkvkl~eVta~dR~sL~epf~~ 169 (198)
T KOG3883|consen 95 MDPESFQRVELLKKEIDKHKDKKEVPIVVLANKRDRAEPREVDMDVAQIWAK-----REKVKLWEVTAMDRPSLYEPFTY 169 (198)
T ss_pred CCHHHHHHHHHHHHHHhhccccccccEEEEechhhcccchhcCHHHHHHHHh-----hhheeEEEEEeccchhhhhHHHH
Confidence 99999999888888887776667899999999999955 677888888887 55788999999999999999999
Q ss_pred HHHHHHhcchhhh
Q 029517 168 LVEVMERSKRTEM 180 (192)
Q Consensus 168 i~~~i~~~~~~~~ 180 (192)
+...+..-+.++.
T Consensus 170 l~~rl~~pqskS~ 182 (198)
T KOG3883|consen 170 LASRLHQPQSKST 182 (198)
T ss_pred HHHhccCCccccc
Confidence 9988766554433
No 197
>PRK10512 selenocysteinyl-tRNA-specific translation factor; Provisional
Probab=99.60 E-value=1.1e-14 Score=124.10 Aligned_cols=146 Identities=17% Similarity=0.149 Sum_probs=96.2
Q ss_pred ccccHHHHHHHHhhhhccCCCCCCCC--CCCCcceEEEEEEe-cCEEEEEEeCCCCcccHHHHHHhhhcCCEEEEEEeCC
Q 029517 14 TKTEFHTLLEKLKSVYSNVEGLPPDR--IVPTVGLNIGRIEV-SNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAA 90 (192)
Q Consensus 14 kst~~~~l~~~~~~~~~~~~~~~~~~--~~~T~g~~~~~~~~-~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ii~v~D~~ 90 (192)
|||++++|.+... +.+.++ ...|+...+..+.. .+..+.+|||||+++|.......+..+|++++|+|++
T Consensus 13 KTtLi~aLtg~~~-------dr~~eE~~rGiTI~l~~~~~~~~~g~~i~~IDtPGhe~fi~~m~~g~~~~D~~lLVVda~ 85 (614)
T PRK10512 13 KTTLLQAITGVNA-------DRLPEEKKRGMTIDLGYAYWPQPDGRVLGFIDVPGHEKFLSNMLAGVGGIDHALLVVACD 85 (614)
T ss_pred HHHHHHHHhCCCC-------ccchhcccCCceEEeeeEEEecCCCcEEEEEECCCHHHHHHHHHHHhhcCCEEEEEEECC
Confidence 7888888764321 222222 36677776666543 3467899999999999877777789999999999998
Q ss_pred CcccHHHHHHHHHHHHhCCCCCCCc-EEEEEeCCCCCCCCCH----HHHHhHcCccccCCcceEEEEeeecCCCCHHHHH
Q 029517 91 CPSRFEDSKTALEKVLRNEDLQGAP-LLILANKQDLPDAVSA----DELARYLDLKKLDERVCMFEAVSGYDGFGIKESV 165 (192)
Q Consensus 91 ~~~s~~~~~~~~~~i~~~~~~~~~p-iiiv~nK~Dl~~~~~~----~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~e~~ 165 (192)
+...-+ ..+.+. +... .++| +++|+||+|+.+.... +++.+.+.. ......+++++||++|.|+++++
T Consensus 86 eg~~~q-T~ehl~-il~~---lgi~~iIVVlNKiDlv~~~~~~~v~~ei~~~l~~--~~~~~~~ii~VSA~tG~gI~~L~ 158 (614)
T PRK10512 86 DGVMAQ-TREHLA-ILQL---TGNPMLTVALTKADRVDEARIAEVRRQVKAVLRE--YGFAEAKLFVTAATEGRGIDALR 158 (614)
T ss_pred CCCcHH-HHHHHH-HHHH---cCCCeEEEEEECCccCCHHHHHHHHHHHHHHHHh--cCCCCCcEEEEeCCCCCCCHHHH
Confidence 643222 112222 2232 2455 6799999998752222 234344321 11124689999999999999999
Q ss_pred HHHHHHHH
Q 029517 166 EWLVEVME 173 (192)
Q Consensus 166 ~~i~~~i~ 173 (192)
++|.+...
T Consensus 159 ~~L~~~~~ 166 (614)
T PRK10512 159 EHLLQLPE 166 (614)
T ss_pred HHHHHhhc
Confidence 99986543
No 198
>TIGR01394 TypA_BipA GTP-binding protein TypA/BipA. This bacterial (and Arabidopsis) protein, termed TypA or BipA, a GTP-binding protein, is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways, but the precise function is unknown.
Probab=99.60 E-value=2e-14 Score=121.90 Aligned_cols=157 Identities=18% Similarity=0.180 Sum_probs=107.8
Q ss_pred ccccHHHHHHHHhhhhc--cCCCCCC------CCCCCCcceEEEEEEecCEEEEEEeCCCCcccHHHHHHhhhcCCEEEE
Q 029517 14 TKTEFHTLLEKLKSVYS--NVEGLPP------DRIVPTVGLNIGRIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVF 85 (192)
Q Consensus 14 kst~~~~l~~~~~~~~~--~~~~~~~------~~~~~T~g~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ii~ 85 (192)
|||++++|+++.-.... .+..... .+...|+......+.+++.++.+|||||+.+|...+..+++.+|++++
T Consensus 14 KTTLv~~LL~~sg~~~~~~~v~~~~~D~~~~ErerGiTI~~~~~~v~~~~~kinlIDTPGh~DF~~ev~~~l~~aD~alL 93 (594)
T TIGR01394 14 KTTLVDALLKQSGTFRANEAVAERVMDSNDLERERGITILAKNTAIRYNGTKINIVDTPGHADFGGEVERVLGMVDGVLL 93 (594)
T ss_pred HHHHHHHHHHhcCCCcccccceeecccCchHHHhCCccEEeeeEEEEECCEEEEEEECCCHHHHHHHHHHHHHhCCEEEE
Confidence 89999999875322111 0111000 112345555555688889999999999999999999999999999999
Q ss_pred EEeCCCcccHHHHHHHHHHHHhCCCCCCCcEEEEEeCCCCCCCCC---HHHHHhHcCcccc--CCcceEEEEeeecCCC-
Q 029517 86 VIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAVS---ADELARYLDLKKL--DERVCMFEAVSGYDGF- 159 (192)
Q Consensus 86 v~D~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~~~~---~~~~~~~~~~~~~--~~~~~~~~~~Sa~~~~- 159 (192)
|+|+++.. ......++..+... ++|+++++||+|+.++.. .+++.+.+..... ....++++.+||++|.
T Consensus 94 VVDa~~G~-~~qT~~~l~~a~~~----~ip~IVviNKiD~~~a~~~~v~~ei~~l~~~~g~~~e~l~~pvl~~SA~~g~~ 168 (594)
T TIGR01394 94 LVDASEGP-MPQTRFVLKKALEL----GLKPIVVINKIDRPSARPDEVVDEVFDLFAELGADDEQLDFPIVYASGRAGWA 168 (594)
T ss_pred EEeCCCCC-cHHHHHHHHHHHHC----CCCEEEEEECCCCCCcCHHHHHHHHHHHHHhhccccccccCcEEechhhcCcc
Confidence 99998643 44445666665543 689999999999975322 2333343321111 1235789999999995
Q ss_pred ---------CHHHHHHHHHHHHHhc
Q 029517 160 ---------GIKESVEWLVEVMERS 175 (192)
Q Consensus 160 ---------gi~e~~~~i~~~i~~~ 175 (192)
|+..+|+.|++.+...
T Consensus 169 ~~~~~~~~~gi~~Lld~Iv~~lP~P 193 (594)
T TIGR01394 169 SLDLDDPSDNMAPLFDAIVRHVPAP 193 (594)
T ss_pred cccCcccccCHHHHHHHHHHhCCCC
Confidence 7999999999877644
No 199
>KOG1489 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]
Probab=99.60 E-value=1.6e-14 Score=110.87 Aligned_cols=140 Identities=26% Similarity=0.361 Sum_probs=104.2
Q ss_pred HHHHHHhhhhccCCCCCCCCCCCCcceEEEEEEecCE-EEEEEeCCCCc-------ccHHHHHHhhhcCCEEEEEEeCCC
Q 029517 20 TLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNS-KLVFWDLGGQP-------GLRSIWEKYYEEAHAVVFVIDAAC 91 (192)
Q Consensus 20 ~l~~~~~~~~~~~~~~~~~~~~~T~g~~~~~~~~~~~-~~~i~D~~G~~-------~~~~~~~~~~~~~d~ii~v~D~~~ 91 (192)
||++.++...++++++.+++..|++|. +.+++. .+.+-|.||.- -.......+++.|+.+++|+|++.
T Consensus 211 TLL~als~AKpkVa~YaFTTL~P~iG~----v~yddf~q~tVADiPGiI~GAh~nkGlG~~FLrHiER~~~l~fVvD~s~ 286 (366)
T KOG1489|consen 211 TLLNALSRAKPKVAHYAFTTLRPHIGT----VNYDDFSQITVADIPGIIEGAHMNKGLGYKFLRHIERCKGLLFVVDLSG 286 (366)
T ss_pred HHHHHhhccCCcccccceeeeccccce----eeccccceeEeccCccccccccccCcccHHHHHHHHhhceEEEEEECCC
Confidence 566666777788999999999999994 333333 49999999921 223345567889999999999998
Q ss_pred c---ccHHHHHHHHHHHHhC-CCCCCCcEEEEEeCCCCCC-CCCH-HHHHhHcCccccCCcceEEEEeeecCCCCHHHHH
Q 029517 92 P---SRFEDSKTALEKVLRN-EDLQGAPLLILANKQDLPD-AVSA-DELARYLDLKKLDERVCMFEAVSGYDGFGIKESV 165 (192)
Q Consensus 92 ~---~s~~~~~~~~~~i~~~-~~~~~~piiiv~nK~Dl~~-~~~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~e~~ 165 (192)
. ..++.++.+..++..+ ....+.|.++|+||+|+++ +.+. +++...++ +..++++||++++|+.++.
T Consensus 287 ~~~~~p~~~~~lL~~ELe~yek~L~~rp~liVaNKiD~~eae~~~l~~L~~~lq-------~~~V~pvsA~~~egl~~ll 359 (366)
T KOG1489|consen 287 KQLRNPWQQLQLLIEELELYEKGLADRPALIVANKIDLPEAEKNLLSSLAKRLQ-------NPHVVPVSAKSGEGLEELL 359 (366)
T ss_pred cccCCHHHHHHHHHHHHHHHhhhhccCceEEEEeccCchhHHHHHHHHHHHHcC-------CCcEEEeeeccccchHHHH
Confidence 8 7777777776666543 2346899999999999964 2222 44544444 3469999999999999999
Q ss_pred HHHHH
Q 029517 166 EWLVE 170 (192)
Q Consensus 166 ~~i~~ 170 (192)
+.|.+
T Consensus 360 ~~lr~ 364 (366)
T KOG1489|consen 360 NGLRE 364 (366)
T ss_pred HHHhh
Confidence 88754
No 200
>cd01896 DRG The developmentally regulated GTP-binding protein (DRG) subfamily is an uncharacterized member of the Obg family, an evolutionary branch of GTPase superfamily proteins. GTPases act as molecular switches regulating diverse cellular processes. DRG2 and DRG1 comprise the DRG subfamily in eukaryotes. In view of their widespread expression in various tissues and high conservation among distantly related species in eukaryotes and archaea, DRG proteins may regulate fundamental cellular processes. It is proposed that the DRG subfamily proteins play their physiological roles through RNA binding.
Probab=99.60 E-value=3.3e-14 Score=108.01 Aligned_cols=141 Identities=24% Similarity=0.217 Sum_probs=91.3
Q ss_pred ccccHHHHHHHHhhhhccCCCCCCCCCCCCcceEEEEEEecCEEEEEEeCCCCcccH-------HHHHHhhhcCCEEEEE
Q 029517 14 TKTEFHTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPGLR-------SIWEKYYEEAHAVVFV 86 (192)
Q Consensus 14 kst~~~~l~~~~~~~~~~~~~~~~~~~~~T~g~~~~~~~~~~~~~~i~D~~G~~~~~-------~~~~~~~~~~d~ii~v 86 (192)
|||++|+|.+.. +.+.+++ .+|.....+.+...+..+++||+||..+.. .....+++++|++++|
T Consensus 13 KStLl~~Ltg~~----~~v~~~~----~tT~~~~~g~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~l~~~~~ad~il~V 84 (233)
T cd01896 13 KSTLLSKLTNTK----SEVAAYE----FTTLTCVPGVLEYKGAKIQLLDLPGIIEGAADGKGRGRQVIAVARTADLILMV 84 (233)
T ss_pred HHHHHHHHHCCC----ccccCCC----CccccceEEEEEECCeEEEEEECCCcccccccchhHHHHHHHhhccCCEEEEE
Confidence 677777776542 2333333 333344445566678899999999974321 2344578999999999
Q ss_pred EeCCCcc-cHHHHHHHHH----------------------------------------HHHhC-----------------
Q 029517 87 IDAACPS-RFEDSKTALE----------------------------------------KVLRN----------------- 108 (192)
Q Consensus 87 ~D~~~~~-s~~~~~~~~~----------------------------------------~i~~~----------------- 108 (192)
+|++++. ..+.+.+.++ .++..
T Consensus 85 ~D~t~~~~~~~~~~~~l~~~gi~l~~~~~~v~~~~~~~ggi~~~~~~~~~~~~~~~v~~~l~~~~i~~~~v~~~~~~~~~ 164 (233)
T cd01896 85 LDATKPEGHREILERELEGVGIRLNKRPPNITIKKKKKGGINITSTVPLTKLDEKTIKAILREYKIHNADVLIREDITVD 164 (233)
T ss_pred ecCCcchhHHHHHHHHHHHcCceecCCCCeEEEEEEecCCEEEeccCCCCCCCHHHHHHHHHHhCeeeEEEEEccCCCHH
Confidence 9998754 3333322221 11100
Q ss_pred -------CCCCCCcEEEEEeCCCCCCCCCHHHHHhHcCccccCCcceEEEEeeecCCCCHHHHHHHHHHHH
Q 029517 109 -------EDLQGAPLLILANKQDLPDAVSADELARYLDLKKLDERVCMFEAVSGYDGFGIKESVEWLVEVM 172 (192)
Q Consensus 109 -------~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~e~~~~i~~~i 172 (192)
.....+|+++|+||+|+. +.++...+.. ...++++||++|.|++++|+.+.+.+
T Consensus 165 ~~~~~~~~~~~y~p~iiV~NK~Dl~---~~~~~~~~~~-------~~~~~~~SA~~g~gi~~l~~~i~~~L 225 (233)
T cd01896 165 DLIDVIEGNRVYIPCLYVYNKIDLI---SIEELDLLAR-------QPNSVVISAEKGLNLDELKERIWDKL 225 (233)
T ss_pred HHHHHHhCCceEeeEEEEEECccCC---CHHHHHHHhc-------CCCEEEEcCCCCCCHHHHHHHHHHHh
Confidence 001347999999999985 3455554443 24588999999999999999998865
No 201
>cd01883 EF1_alpha Eukaryotic elongation factor 1 (EF1) alpha subfamily. EF1 is responsible for the GTP-dependent binding of aminoacyl-tRNAs to the ribosomes. EF1 is composed of four subunits: the alpha chain which binds GTP and aminoacyl-tRNAs, the gamma chain that probably plays a role in anchoring the complex to other cellular components and the beta and delta (or beta') chains. This subfamily is the alpha subunit, and represents the counterpart of bacterial EF-Tu for the archaea (aEF1-alpha) and eukaryotes (eEF1-alpha). eEF1-alpha interacts with the actin of the eukaryotic cytoskeleton and may thereby play a role in cellular transformation and apoptosis. EF-Tu can have no such role in bacteria. In humans, the isoform eEF1A2 is overexpressed in 2/3 of breast cancers and has been identified as a putative oncogene. This subfamily also includes Hbs1, a G protein known to be important for efficient growth and protein synthesis under conditions of limiting translation initiation in
Probab=99.59 E-value=6.8e-15 Score=110.86 Aligned_cols=120 Identities=19% Similarity=0.213 Sum_probs=78.9
Q ss_pred CCCcceEEEEEEecCEEEEEEeCCCCcccHHHHHHhhhcCCEEEEEEeCCCccc---H---HHHHHHHHHHHhCCCCCCC
Q 029517 41 VPTVGLNIGRIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSR---F---EDSKTALEKVLRNEDLQGA 114 (192)
Q Consensus 41 ~~T~g~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ii~v~D~~~~~s---~---~~~~~~~~~i~~~~~~~~~ 114 (192)
..|.......+..++.++.+|||||+.+|...+...++.+|++|+|+|+++... + ......+...... ...
T Consensus 62 g~T~d~~~~~~~~~~~~i~liDtpG~~~~~~~~~~~~~~~d~~i~VvDa~~~~~~~~~~~~~~~~~~~~~~~~~---~~~ 138 (219)
T cd01883 62 GVTIDVGLAKFETEKYRFTILDAPGHRDFVPNMITGASQADVAVLVVDARKGEFEAGFEKGGQTREHALLARTL---GVK 138 (219)
T ss_pred ccCeecceEEEeeCCeEEEEEECCChHHHHHHHHHHhhhCCEEEEEEECCCCccccccccccchHHHHHHHHHc---CCC
Confidence 445555566677788999999999998888777777888999999999987421 1 1112222222222 236
Q ss_pred cEEEEEeCCCCCCC-CC---HHHHHh----HcCccccCCcceEEEEeeecCCCCHHH
Q 029517 115 PLLILANKQDLPDA-VS---ADELAR----YLDLKKLDERVCMFEAVSGYDGFGIKE 163 (192)
Q Consensus 115 piiiv~nK~Dl~~~-~~---~~~~~~----~~~~~~~~~~~~~~~~~Sa~~~~gi~e 163 (192)
|+++++||+|+... .+ .+++.+ .++........++++++||++|.||++
T Consensus 139 ~iiivvNK~Dl~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~ii~iSA~tg~gi~~ 195 (219)
T cd01883 139 QLIVAVNKMDDVTVNWSEERYDEIKKELSPFLKKVGYNPKDVPFIPISGLTGDNLIE 195 (219)
T ss_pred eEEEEEEccccccccccHHHHHHHHHHHHHHHHHcCCCcCCceEEEeecCcCCCCCc
Confidence 89999999999742 11 122222 222111122358899999999999973
No 202
>cd04168 TetM_like Tet(M)-like subfamily. Tet(M), Tet(O), Tet(W), and OtrA are tetracycline resistance genes found in Gram-positive and Gram-negative bacteria. Tetracyclines inhibit protein synthesis by preventing aminoacyl-tRNA from binding to the ribosomal acceptor site. This subfamily contains tetracycline resistance proteins that function through ribosomal protection and are typically found on mobile genetic elements, such as transposons or plasmids, and are often conjugative. Ribosomal protection proteins are homologous to the elongation factors EF-Tu and EF-G. EF-G and Tet(M) compete for binding on the ribosomes. Tet(M) has a higher affinity than EF-G, suggesting these two proteins may have overlapping binding sites and that Tet(M) must be released before EF-G can bind. Tet(M) and Tet(O) have been shown to have ribosome-dependent GTPase activity. These proteins are part of the GTP translation factor family, which includes EF-G, EF-Tu, EF2, LepA, and SelB.
Probab=99.59 E-value=6.8e-14 Score=106.49 Aligned_cols=155 Identities=19% Similarity=0.208 Sum_probs=103.1
Q ss_pred ccccHHHHHHHHhhhhc--cCCC--CCCC------CCCCCcceEEEEEEecCEEEEEEeCCCCcccHHHHHHhhhcCCEE
Q 029517 14 TKTEFHTLLEKLKSVYS--NVEG--LPPD------RIVPTVGLNIGRIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAV 83 (192)
Q Consensus 14 kst~~~~l~~~~~~~~~--~~~~--~~~~------~~~~T~g~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~i 83 (192)
|||+.++|+...-.+.. .+.. .+.+ ....|+......+..++.++.+|||||+.+|...+..+++.+|++
T Consensus 12 KTtL~~~ll~~~g~i~~~g~v~~~~~~~D~~~~e~~rg~ti~~~~~~~~~~~~~i~liDTPG~~~f~~~~~~~l~~aD~~ 91 (237)
T cd04168 12 KTTLTESLLYTSGAIRKLGSVDKGTTRTDTMELERQRGITIFSAVASFQWEDTKVNLIDTPGHMDFIAEVERSLSVLDGA 91 (237)
T ss_pred HHHHHHHHHHHcCCccccccccCCcccCCCchhHhhCCCceeeeeEEEEECCEEEEEEeCCCccchHHHHHHHHHHhCeE
Confidence 89999999876432111 1111 1111 123355555667788899999999999999999999999999999
Q ss_pred EEEEeCCCcccHHHHHHHHHHHHhCCCCCCCcEEEEEeCCCCCCCC---CHHHH--------------------------
Q 029517 84 VFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAV---SADEL-------------------------- 134 (192)
Q Consensus 84 i~v~D~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~~~---~~~~~-------------------------- 134 (192)
++|+|+++.... ....++..+.. .++|+++++||+|+.... ..+++
T Consensus 92 IlVvd~~~g~~~-~~~~~~~~~~~----~~~P~iivvNK~D~~~a~~~~~~~~i~~~~~~~~~~~~~p~~~~~~~~~~~~ 166 (237)
T cd04168 92 ILVISAVEGVQA-QTRILWRLLRK----LNIPTIIFVNKIDRAGADLEKVYQEIKEKLSSDIVPMQKVGLAPNICETNEI 166 (237)
T ss_pred EEEEeCCCCCCH-HHHHHHHHHHH----cCCCEEEEEECccccCCCHHHHHHHHHHHHCCCeEEEECCcEeeeeeeeeec
Confidence 999999876543 23344443332 368999999999986311 01111
Q ss_pred ----------------HhHcCccc--------------cCCcceEEEEeeecCCCCHHHHHHHHHHHHH
Q 029517 135 ----------------ARYLDLKK--------------LDERVCMFEAVSGYDGFGIKESVEWLVEVME 173 (192)
Q Consensus 135 ----------------~~~~~~~~--------------~~~~~~~~~~~Sa~~~~gi~e~~~~i~~~i~ 173 (192)
..+++-.. ....-+|++..||.++.|+..+++.+.+.+.
T Consensus 167 ~~~l~e~vae~dd~l~e~yl~~~~~~~~el~~~l~~~~~~~~~~Pv~~gsa~~~~Gv~~ll~~~~~~~p 235 (237)
T cd04168 167 DDEFWETLAEGDDELLEKYLEGGPIEELELDNELSARIAKRKVFPVYHGSALKGIGIEELLEGITKLFP 235 (237)
T ss_pred cHHHHHHHhcCCHHHHHHHhCCCCCCHHHHHHHHHHHHHhCCeEEEEEccccCCcCHHHHHHHHHHhcC
Confidence 11111000 1234578888999999999999999987653
No 203
>PRK00454 engB GTP-binding protein YsxC; Reviewed
Probab=99.59 E-value=2.2e-14 Score=105.95 Aligned_cols=109 Identities=24% Similarity=0.272 Sum_probs=73.3
Q ss_pred CEEEEEEeCCCC----------cccHHHHHHhhhcC---CEEEEEEeCCCcccHHHHHHHHHHHHhCCCCCCCcEEEEEe
Q 029517 55 NSKLVFWDLGGQ----------PGLRSIWEKYYEEA---HAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILAN 121 (192)
Q Consensus 55 ~~~~~i~D~~G~----------~~~~~~~~~~~~~~---d~ii~v~D~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~n 121 (192)
+..+.+|||||. +.+......+++.+ +++++|+|.+.+.+... .++...... .++|+++++|
T Consensus 69 ~~~l~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~--~~i~~~l~~---~~~~~iiv~n 143 (196)
T PRK00454 69 NDKLRLVDLPGYGYAKVSKEEKEKWQKLIEEYLRTRENLKGVVLLIDSRHPLKELD--LQMIEWLKE---YGIPVLIVLT 143 (196)
T ss_pred CCeEEEeCCCCCCCcCCCchHHHHHHHHHHHHHHhCccceEEEEEEecCCCCCHHH--HHHHHHHHH---cCCcEEEEEE
Confidence 468999999994 34444556666654 67888899876544332 222222232 3689999999
Q ss_pred CCCCCCCCCHH----HHHhHcCccccCCcceEEEEeeecCCCCHHHHHHHHHHHHH
Q 029517 122 KQDLPDAVSAD----ELARYLDLKKLDERVCMFEAVSGYDGFGIKESVEWLVEVME 173 (192)
Q Consensus 122 K~Dl~~~~~~~----~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~e~~~~i~~~i~ 173 (192)
|+|+......+ .+.+.+. ....+++++||+++.|++++++.|.+.+.
T Consensus 144 K~Dl~~~~~~~~~~~~i~~~l~-----~~~~~~~~~Sa~~~~gi~~l~~~i~~~~~ 194 (196)
T PRK00454 144 KADKLKKGERKKQLKKVRKALK-----FGDDEVILFSSLKKQGIDELRAAIAKWLA 194 (196)
T ss_pred CcccCCHHHHHHHHHHHHHHHH-----hcCCceEEEEcCCCCCHHHHHHHHHHHhc
Confidence 99986532222 2333333 22578899999999999999999987654
No 204
>TIGR03680 eif2g_arch translation initiation factor 2 subunit gamma. eIF-2 functions in the early steps of protein synthesis by forming a ternary complex with GTP and initiator tRNA.
Probab=99.58 E-value=1.1e-14 Score=119.05 Aligned_cols=114 Identities=18% Similarity=0.133 Sum_probs=79.7
Q ss_pred CEEEEEEeCCCCcccHHHHHHhhhcCCEEEEEEeCCCcccHHHHHHHHHHHHhCCCCCCCcEEEEEeCCCCCCCCC----
Q 029517 55 NSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAVS---- 130 (192)
Q Consensus 55 ~~~~~i~D~~G~~~~~~~~~~~~~~~d~ii~v~D~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~~~~---- 130 (192)
...+.+||+||+++|...+......+|++++|+|++++.......+.+..+... ...|+++++||+|+.+...
T Consensus 79 ~~~i~liDtPGh~~f~~~~~~g~~~aD~aIlVVDa~~g~~~~qt~e~l~~l~~~---gi~~iIVvvNK~Dl~~~~~~~~~ 155 (406)
T TIGR03680 79 LRRVSFVDAPGHETLMATMLSGAALMDGALLVIAANEPCPQPQTKEHLMALEII---GIKNIVIVQNKIDLVSKEKALEN 155 (406)
T ss_pred ccEEEEEECCCHHHHHHHHHHHHHHCCEEEEEEECCCCccccchHHHHHHHHHc---CCCeEEEEEEccccCCHHHHHHH
Confidence 468999999999999888888888999999999998643112222233322222 2357999999999875221
Q ss_pred HHHHHhHcCccccCCcceEEEEeeecCCCCHHHHHHHHHHHHH
Q 029517 131 ADELARYLDLKKLDERVCMFEAVSGYDGFGIKESVEWLVEVME 173 (192)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~e~~~~i~~~i~ 173 (192)
.+++.+++.. .....++++++||++|.|+++++++|...+.
T Consensus 156 ~~~i~~~l~~--~~~~~~~ii~vSA~~g~gi~~L~e~L~~~l~ 196 (406)
T TIGR03680 156 YEEIKEFVKG--TVAENAPIIPVSALHNANIDALLEAIEKFIP 196 (406)
T ss_pred HHHHHhhhhh--cccCCCeEEEEECCCCCChHHHHHHHHHhCC
Confidence 2333333321 0122578999999999999999999988654
No 205
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=99.58 E-value=3e-15 Score=101.97 Aligned_cols=105 Identities=23% Similarity=0.428 Sum_probs=71.3
Q ss_pred ccccHHHHHHHHhhhhccCCCCCCCCCCCCcceEEEEEEecCEEEEEEeCCCCcccHHHHHHhhhcCCEEEEEEeCCCcc
Q 029517 14 TKTEFHTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPS 93 (192)
Q Consensus 14 kst~~~~l~~~~~~~~~~~~~~~~~~~~~T~g~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ii~v~D~~~~~ 93 (192)
|||++++|++.... ..........++..............+.+||++|++.+...+...+.++|++++|||++++.
T Consensus 12 KTsLi~~l~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~d~~ilv~D~s~~~ 87 (119)
T PF08477_consen 12 KTSLIRRLCGGEFP----DNSVPEETSEITIGVDVIVVDGDRQSLQFWDFGGQEEFYSQHQFFLKKADAVILVYDLSDPE 87 (119)
T ss_dssp HHHHHHHHHHSS------------SSTTSCEEEEEEEETTEEEEEEEEEESSSHCHHCTSHHHHHHSCEEEEEEECCGHH
T ss_pred HHHHHHHHhcCCCc----ccccccccCCCcEEEEEEEecCCceEEEEEecCccceecccccchhhcCcEEEEEEcCCChH
Confidence 77888877765443 00111223334444444444444556999999999988887777799999999999999999
Q ss_pred cHHHHHHH---HHHHHhCCCCCCCcEEEEEeCCC
Q 029517 94 RFEDSKTA---LEKVLRNEDLQGAPLLILANKQD 124 (192)
Q Consensus 94 s~~~~~~~---~~~i~~~~~~~~~piiiv~nK~D 124 (192)
+++.+..+ +..+.... .++|+++|+||.|
T Consensus 88 s~~~~~~~~~~l~~~~~~~--~~~piilv~nK~D 119 (119)
T PF08477_consen 88 SLEYLSQLLKWLKNIRKRD--KNIPIILVGNKSD 119 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHS--SCSEEEEEEE-TC
T ss_pred HHHHHHHHHHHHHHHHccC--CCCCEEEEEeccC
Confidence 99887555 44444322 4699999999998
No 206
>PRK04004 translation initiation factor IF-2; Validated
Probab=99.57 E-value=3.7e-14 Score=120.23 Aligned_cols=106 Identities=21% Similarity=0.287 Sum_probs=74.1
Q ss_pred EEEEeCCCCcccHHHHHHhhhcCCEEEEEEeCCC---cccHHHHHHHHHHHHhCCCCCCCcEEEEEeCCCCCCCCC----
Q 029517 58 LVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAAC---PSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAVS---- 130 (192)
Q Consensus 58 ~~i~D~~G~~~~~~~~~~~~~~~d~ii~v~D~~~---~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~~~~---- 130 (192)
+.+|||||++.|..++...++.+|++++|+|+++ +.+++.+.. + .. .++|+++++||+|+.....
T Consensus 73 i~~iDTPG~e~f~~~~~~~~~~aD~~IlVvDa~~g~~~qt~e~i~~----~-~~---~~vpiIvviNK~D~~~~~~~~~~ 144 (586)
T PRK04004 73 LLFIDTPGHEAFTNLRKRGGALADIAILVVDINEGFQPQTIEAINI----L-KR---RKTPFVVAANKIDRIPGWKSTED 144 (586)
T ss_pred EEEEECCChHHHHHHHHHhHhhCCEEEEEEECCCCCCHhHHHHHHH----H-HH---cCCCEEEEEECcCCchhhhhhcC
Confidence 6899999999999998888899999999999987 344443322 2 22 4689999999999852100
Q ss_pred ----------HHH-----------HHhHcCccccC----------CcceEEEEeeecCCCCHHHHHHHHHHH
Q 029517 131 ----------ADE-----------LARYLDLKKLD----------ERVCMFEAVSGYDGFGIKESVEWLVEV 171 (192)
Q Consensus 131 ----------~~~-----------~~~~~~~~~~~----------~~~~~~~~~Sa~~~~gi~e~~~~i~~~ 171 (192)
... +...+....+. ....+++++||++|.|++++.+.+...
T Consensus 145 ~~~~e~~~~~~~~v~~~f~~~l~ev~~~L~~~g~~~e~~~~~~~~~~~v~ivpiSA~tGeGi~dLl~~i~~~ 216 (586)
T PRK04004 145 APFLESIEKQSQRVQQELEEKLYELIGQLSELGFSADRFDRVKDFTKTVAIVPVSAKTGEGIPDLLMVLAGL 216 (586)
T ss_pred chHHHHHhhhhHHHHHHHHHHHHHHHHHHHhcCCChhhhhhhhccCCCceEeeccCCCCCChHHHHHHHHHH
Confidence 011 11111111111 135789999999999999999988653
No 207
>COG1160 Predicted GTPases [General function prediction only]
Probab=99.57 E-value=5.3e-14 Score=113.15 Aligned_cols=152 Identities=22% Similarity=0.254 Sum_probs=111.3
Q ss_pred hhccccHHHHHHHHhhhhccCCCCCCCCCCCCcceEEEEEEecCEEEEEEeCCCC----------cccHHH-HHHhhhcC
Q 029517 12 IFTKTEFHTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQ----------PGLRSI-WEKYYEEA 80 (192)
Q Consensus 12 ~~kst~~~~l~~~~~~~~~~~~~~~~~~~~~T~g~~~~~~~~~~~~~~i~D~~G~----------~~~~~~-~~~~~~~~ 80 (192)
.=|||++|+|+++-..+++..++++++.. ...+..++.++.+.||+|. +.|... ....+..+
T Consensus 189 vGKSsLiN~ilgeeR~Iv~~~aGTTRD~I-------~~~~e~~~~~~~liDTAGiRrk~ki~e~~E~~Sv~rt~~aI~~a 261 (444)
T COG1160 189 VGKSSLINAILGEERVIVSDIAGTTRDSI-------DIEFERDGRKYVLIDTAGIRRKGKITESVEKYSVARTLKAIERA 261 (444)
T ss_pred CCchHHHHHhccCceEEecCCCCccccce-------eeeEEECCeEEEEEECCCCCcccccccceEEEeehhhHhHHhhc
Confidence 34899999999999999999999888875 4457777889999999993 333332 34467889
Q ss_pred CEEEEEEeCCCcccHHHHHHHHHHHHhCCCCCCCcEEEEEeCCCCCCC--CCHHHHHhHcCccccCCcceEEEEeeecCC
Q 029517 81 HAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDA--VSADELARYLDLKKLDERVCMFEAVSGYDG 158 (192)
Q Consensus 81 d~ii~v~D~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 158 (192)
|.+++|+|++.+-+-+. .-+..+... .+.+++++.||.|+.+. ...++....+..........+.+.+||++|
T Consensus 262 ~vvllviDa~~~~~~qD--~~ia~~i~~---~g~~~vIvvNKWDl~~~~~~~~~~~k~~i~~~l~~l~~a~i~~iSA~~~ 336 (444)
T COG1160 262 DVVLLVIDATEGISEQD--LRIAGLIEE---AGRGIVIVVNKWDLVEEDEATMEEFKKKLRRKLPFLDFAPIVFISALTG 336 (444)
T ss_pred CEEEEEEECCCCchHHH--HHHHHHHHH---cCCCeEEEEEccccCCchhhHHHHHHHHHHHHhccccCCeEEEEEecCC
Confidence 99999999987743332 333343333 57999999999998764 444444444432111234678999999999
Q ss_pred CCHHHHHHHHHHHHHhc
Q 029517 159 FGIKESVEWLVEVMERS 175 (192)
Q Consensus 159 ~gi~e~~~~i~~~i~~~ 175 (192)
.|+.++|+++.+.....
T Consensus 337 ~~i~~l~~~i~~~~~~~ 353 (444)
T COG1160 337 QGLDKLFEAIKEIYECA 353 (444)
T ss_pred CChHHHHHHHHHHHHHh
Confidence 99999999988765543
No 208
>KOG0077 consensus Vesicle coat complex COPII, GTPase subunit SAR1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.56 E-value=1.3e-14 Score=101.40 Aligned_cols=144 Identities=33% Similarity=0.521 Sum_probs=118.2
Q ss_pred HHHHHHhhhhccCCCCCCCCCCCCcceEEEEEEecCEEEEEEeCCCCcccHHHHHHhhhcCCEEEEEEeCCCcccHHHHH
Q 029517 20 TLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSK 99 (192)
Q Consensus 20 ~l~~~~~~~~~~~~~~~~~~~~~T~g~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ii~v~D~~~~~s~~~~~ 99 (192)
||++.++. .-...+.||....-.++...+++++.+|.+||...+..|..|+-.+|++++.+|+-|.+.+.+.+
T Consensus 35 TLLHMLKd-------Drl~qhvPTlHPTSE~l~Ig~m~ftt~DLGGH~qArr~wkdyf~~v~~iv~lvda~d~er~~es~ 107 (193)
T KOG0077|consen 35 TLLHMLKD-------DRLGQHVPTLHPTSEELSIGGMTFTTFDLGGHLQARRVWKDYFPQVDAIVYLVDAYDQERFAESK 107 (193)
T ss_pred hHHHHHcc-------ccccccCCCcCCChHHheecCceEEEEccccHHHHHHHHHHHHhhhceeEeeeehhhHHHhHHHH
Confidence 78888884 33455677777766677778899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhCCCCCCCcEEEEEeCCCCCCCCCHHHHHhHcCc------------cccCCcceEEEEeeecCCCCHHHHHHH
Q 029517 100 TALEKVLRNEDLQGAPLLILANKQDLPDAVSADELARYLDL------------KKLDERVCMFEAVSGYDGFGIKESVEW 167 (192)
Q Consensus 100 ~~~~~i~~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~Sa~~~~gi~e~~~~ 167 (192)
..++.++........|+++.+||+|.+.+.+.++....+.+ .....+....+.||...+.|.-+.|.|
T Consensus 108 ~eld~ll~~e~la~vp~lilgnKId~p~a~se~~l~~~l~l~~~t~~~~~v~~~~~~~rp~evfmcsi~~~~gy~e~fkw 187 (193)
T KOG0077|consen 108 KELDALLSDESLATVPFLILGNKIDIPYAASEDELRFHLGLSNFTTGKGKVNLTDSNVRPLEVFMCSIVRKMGYGEGFKW 187 (193)
T ss_pred HHHHHHHhHHHHhcCcceeecccccCCCcccHHHHHHHHHHHHHhcccccccccCCCCCeEEEEEEEEEccCccceeeee
Confidence 99999988766678999999999999987766665544431 112234678899999999999999988
Q ss_pred HHH
Q 029517 168 LVE 170 (192)
Q Consensus 168 i~~ 170 (192)
+..
T Consensus 188 l~q 190 (193)
T KOG0077|consen 188 LSQ 190 (193)
T ss_pred hhh
Confidence 764
No 209
>KOG1673 consensus Ras GTPases [General function prediction only]
Probab=99.56 E-value=7.6e-15 Score=101.55 Aligned_cols=141 Identities=16% Similarity=0.234 Sum_probs=111.5
Q ss_pred hccCCCCCCCCCCCCcceEEEE----EEecCEEEEEEeCCCCcccHHHHHHhhhcCCEEEEEEeCCCcccHHHHHHHHHH
Q 029517 29 YSNVEGLPPDRIVPTVGLNIGR----IEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEK 104 (192)
Q Consensus 29 ~~~~~~~~~~~~~~T~g~~~~~----~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ii~v~D~~~~~s~~~~~~~~~~ 104 (192)
+..+++...+++..|.|+++.. +.+-.+.+.|||.+|++++..+.+-.++.+-++++|+|.+.++++..+.+|..+
T Consensus 38 vkYV~~~~de~~~q~~GvN~mdkt~~i~~t~IsfSIwdlgG~~~~~n~lPiac~dsvaIlFmFDLt~r~TLnSi~~WY~Q 117 (205)
T KOG1673|consen 38 VKYVQNEYDEEYTQTLGVNFMDKTVSIRGTDISFSIWDLGGQREFINMLPIACKDSVAILFMFDLTRRSTLNSIKEWYRQ 117 (205)
T ss_pred hhhhcchhHHHHHHHhCccceeeEEEecceEEEEEEEecCCcHhhhccCceeecCcEEEEEEEecCchHHHHHHHHHHHH
Confidence 3445566667888899999874 444567899999999999999999899999999999999999999999999999
Q ss_pred HHhCCCCCCCcEEEEEeCCCCCCCCCHH-------HHHhHcCccccCCcceEEEEeeecCCCCHHHHHHHHHHHHHhcc
Q 029517 105 VLRNEDLQGAPLLILANKQDLPDAVSAD-------ELARYLDLKKLDERVCMFEAVSGYDGFGIKESVEWLVEVMERSK 176 (192)
Q Consensus 105 i~~~~~~~~~piiiv~nK~Dl~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~e~~~~i~~~i~~~~ 176 (192)
...... .-+|+ +||+|.|+--..+.+ +++.+++ ..+.+.+.+|+..+.||+.+|.-+..++.+..
T Consensus 118 Ar~~Nk-tAiPi-lvGTKyD~fi~lp~e~Q~~I~~qar~YAk-----~mnAsL~F~Sts~sINv~KIFK~vlAklFnL~ 189 (205)
T KOG1673|consen 118 ARGLNK-TAIPI-LVGTKYDLFIDLPPELQETISRQARKYAK-----VMNASLFFCSTSHSINVQKIFKIVLAKLFNLP 189 (205)
T ss_pred HhccCC-ccceE-EeccchHhhhcCCHHHHHHHHHHHHHHHH-----HhCCcEEEeeccccccHHHHHHHHHHHHhCCc
Confidence 877643 34666 679999974322222 2344444 55788999999999999999999988877653
No 210
>PRK10218 GTP-binding protein; Provisional
Probab=99.55 E-value=1.3e-13 Score=117.13 Aligned_cols=157 Identities=17% Similarity=0.193 Sum_probs=103.1
Q ss_pred ccccHHHHHHHHhhhhccCC--CCC--CCCCCCCcceEE----EEEEecCEEEEEEeCCCCcccHHHHHHhhhcCCEEEE
Q 029517 14 TKTEFHTLLEKLKSVYSNVE--GLP--PDRIVPTVGLNI----GRIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVF 85 (192)
Q Consensus 14 kst~~~~l~~~~~~~~~~~~--~~~--~~~~~~T~g~~~----~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ii~ 85 (192)
|||++++|+.+.-....... ... ....+++.|+.+ ..+..+++++.+|||||+.+|...+..+++.+|++|+
T Consensus 18 KTTLv~~Ll~~~g~~~~~~~~~~~v~D~~~~E~erGiTi~~~~~~i~~~~~~inliDTPG~~df~~~v~~~l~~aDg~IL 97 (607)
T PRK10218 18 KTTLVDKLLQQSGTFDSRAETQERVMDSNDLEKERGITILAKNTAIKWNDYRINIVDTPGHADFGGEVERVMSMVDSVLL 97 (607)
T ss_pred HHHHHHHHHHhcCCcccccccceeeeccccccccCceEEEEEEEEEecCCEEEEEEECCCcchhHHHHHHHHHhCCEEEE
Confidence 89999999864322111100 000 011233444443 3566788999999999999999999999999999999
Q ss_pred EEeCCCcccHHHHHHHHHHHHhCCCCCCCcEEEEEeCCCCCCCCC---HHHHHhHcCc-ccc-CCcceEEEEeeecCCC-
Q 029517 86 VIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAVS---ADELARYLDL-KKL-DERVCMFEAVSGYDGF- 159 (192)
Q Consensus 86 v~D~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~~~~---~~~~~~~~~~-~~~-~~~~~~~~~~Sa~~~~- 159 (192)
|+|+++....+ ...++..+.. .++|.++++||+|+..+.. .+++.+.+.. ... ....++++.+||++|.
T Consensus 98 VVDa~~G~~~q-t~~~l~~a~~----~gip~IVviNKiD~~~a~~~~vl~ei~~l~~~l~~~~~~~~~PVi~~SA~~G~~ 172 (607)
T PRK10218 98 VVDAFDGPMPQ-TRFVTKKAFA----YGLKPIVVINKVDRPGARPDWVVDQVFDLFVNLDATDEQLDFPIVYASALNGIA 172 (607)
T ss_pred EEecccCccHH-HHHHHHHHHH----cCCCEEEEEECcCCCCCchhHHHHHHHHHHhccCccccccCCCEEEeEhhcCcc
Confidence 99998754332 2333333333 3689999999999976432 2344444321 111 1235789999999998
Q ss_pred ---------CHHHHHHHHHHHHHhc
Q 029517 160 ---------GIKESVEWLVEVMERS 175 (192)
Q Consensus 160 ---------gi~e~~~~i~~~i~~~ 175 (192)
|+..+++.|.+.+...
T Consensus 173 ~~~~~~~~~~i~~Lld~Ii~~iP~P 197 (607)
T PRK10218 173 GLDHEDMAEDMTPLYQAIVDHVPAP 197 (607)
T ss_pred cCCccccccchHHHHHHHHHhCCCC
Confidence 5888888888776543
No 211
>cd04166 CysN_ATPS CysN_ATPS subfamily. CysN, together with protein CysD, form the ATP sulfurylase (ATPS) complex in some bacteria and lower eukaryotes. ATPS catalyzes the production of ATP sulfurylase (APS) and pyrophosphate (PPi) from ATP and sulfate. CysD, which catalyzes ATP hydrolysis, is a member of the ATP pyrophosphatase (ATP PPase) family. CysN hydrolysis of GTP is required for CysD hydrolysis of ATP; however, CysN hydrolysis of GTP is not dependent on CysD hydrolysis of ATP. CysN is an example of lateral gene transfer followed by acquisition of new function. In many organisms, an ATPS exists which is not GTP-dependent and shares no sequence or structural similarity to CysN.
Probab=99.55 E-value=1e-13 Score=103.60 Aligned_cols=117 Identities=16% Similarity=0.134 Sum_probs=75.1
Q ss_pred CCcceEEEEEEecCEEEEEEeCCCCcccHHHHHHhhhcCCEEEEEEeCCCcccHHHHHHHHHHHHhCCCCCCCcEEEEEe
Q 029517 42 PTVGLNIGRIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILAN 121 (192)
Q Consensus 42 ~T~g~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ii~v~D~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~n 121 (192)
.|.......+...+.++.+|||||+++|.......++.+|++++|+|++.+..-.. .... .+.... ...++++|+|
T Consensus 63 ~T~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~ad~~llVvD~~~~~~~~~-~~~~-~~~~~~--~~~~iIvviN 138 (208)
T cd04166 63 ITIDVAYRYFSTPKRKFIIADTPGHEQYTRNMVTGASTADLAILLVDARKGVLEQT-RRHS-YILSLL--GIRHVVVAVN 138 (208)
T ss_pred cCeecceeEEecCCceEEEEECCcHHHHHHHHHHhhhhCCEEEEEEECCCCccHhH-HHHH-HHHHHc--CCCcEEEEEE
Confidence 34444455566677899999999999887777777899999999999986532211 1111 222221 2246788999
Q ss_pred CCCCCCCCC--H----HHHHhHcCccccCCcceEEEEeeecCCCCHHHH
Q 029517 122 KQDLPDAVS--A----DELARYLDLKKLDERVCMFEAVSGYDGFGIKES 164 (192)
Q Consensus 122 K~Dl~~~~~--~----~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~e~ 164 (192)
|+|+.+... . .++.+++. .+.....+++++||++|.|+.+.
T Consensus 139 K~D~~~~~~~~~~~i~~~~~~~~~--~~~~~~~~ii~iSA~~g~ni~~~ 185 (208)
T cd04166 139 KMDLVDYSEEVFEEIVADYLAFAA--KLGIEDITFIPISALDGDNVVSR 185 (208)
T ss_pred chhcccCCHHHHHHHHHHHHHHHH--HcCCCCceEEEEeCCCCCCCccC
Confidence 999875211 1 12222222 11122356999999999999864
No 212
>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB. Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes.
Probab=99.55 E-value=3.2e-14 Score=103.87 Aligned_cols=132 Identities=20% Similarity=0.261 Sum_probs=77.8
Q ss_pred ccccHHHHHHHHhhhhccCCCCCCCCCCCCcceEEEEEEecCEEEEEEeCCCCc----------ccHHHHHHhhhc---C
Q 029517 14 TKTEFHTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQP----------GLRSIWEKYYEE---A 80 (192)
Q Consensus 14 kst~~~~l~~~~~~~~~~~~~~~~~~~~~T~g~~~~~~~~~~~~~~i~D~~G~~----------~~~~~~~~~~~~---~ 80 (192)
|||++|+|.+... ...+ ......|.++.+...+ . .+.+|||||.. .+......+++. +
T Consensus 31 KStlin~l~~~~~--~~~~----~~~~~~t~~~~~~~~~--~-~~~liDtpG~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 101 (179)
T TIGR03598 31 KSSLINALTNRKK--LART----SKTPGRTQLINFFEVN--D-GFRLVDLPGYGYAKVSKEEKEKWQKLIEEYLEKRENL 101 (179)
T ss_pred HHHHHHHHhCCCC--cccc----cCCCCcceEEEEEEeC--C-cEEEEeCCCCccccCChhHHHHHHHHHHHHHHhChhh
Confidence 6777777765420 0111 1122234444433332 2 68999999952 234444456654 5
Q ss_pred CEEEEEEeCCCcccHHHHHHHHHHHHhCCCCCCCcEEEEEeCCCCCCCC----CHHHHHhHcCccccCCcceEEEEeeec
Q 029517 81 HAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAV----SADELARYLDLKKLDERVCMFEAVSGY 156 (192)
Q Consensus 81 d~ii~v~D~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~~~----~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 156 (192)
+++++|+|++++-+.... .+...... .++|+++++||+|+.... ..+++.+.+... ....+++++||+
T Consensus 102 ~~ii~vvd~~~~~~~~~~--~~~~~~~~---~~~pviiv~nK~D~~~~~~~~~~~~~i~~~l~~~---~~~~~v~~~Sa~ 173 (179)
T TIGR03598 102 KGVVLLMDIRHPLKELDL--EMLEWLRE---RGIPVLIVLTKADKLKKSELNKQLKKIKKALKKD---ADDPSVQLFSSL 173 (179)
T ss_pred cEEEEEecCCCCCCHHHH--HHHHHHHH---cCCCEEEEEECcccCCHHHHHHHHHHHHHHHhhc---cCCCceEEEECC
Confidence 799999999875444443 22223333 368999999999987522 233444444411 123589999999
Q ss_pred CCCCHH
Q 029517 157 DGFGIK 162 (192)
Q Consensus 157 ~~~gi~ 162 (192)
+|+|++
T Consensus 174 ~g~gi~ 179 (179)
T TIGR03598 174 KKTGID 179 (179)
T ss_pred CCCCCC
Confidence 999974
No 213
>PRK04000 translation initiation factor IF-2 subunit gamma; Validated
Probab=99.55 E-value=5.4e-14 Score=115.01 Aligned_cols=113 Identities=18% Similarity=0.147 Sum_probs=76.8
Q ss_pred EEEEEEeCCCCcccHHHHHHhhhcCCEEEEEEeCCCcc-cHHHHHHHHHHHHhCCCCCCCcEEEEEeCCCCCCCCC----
Q 029517 56 SKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPS-RFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAVS---- 130 (192)
Q Consensus 56 ~~~~i~D~~G~~~~~~~~~~~~~~~d~ii~v~D~~~~~-s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~~~~---- 130 (192)
..+.+|||||+++|..........+|++++|+|++++. .-+. ...+..+... ...|+++++||+|+.+...
T Consensus 85 ~~i~liDtPG~~~f~~~~~~~~~~~D~~llVVDa~~~~~~~~t-~~~l~~l~~~---~i~~iiVVlNK~Dl~~~~~~~~~ 160 (411)
T PRK04000 85 RRVSFVDAPGHETLMATMLSGAALMDGAILVIAANEPCPQPQT-KEHLMALDII---GIKNIVIVQNKIDLVSKERALEN 160 (411)
T ss_pred cEEEEEECCCHHHHHHHHHHHHhhCCEEEEEEECCCCCCChhH-HHHHHHHHHc---CCCcEEEEEEeeccccchhHHHH
Confidence 68999999999988776655566789999999998643 1221 1222222222 2347999999999975322
Q ss_pred HHHHHhHcCccccCCcceEEEEeeecCCCCHHHHHHHHHHHHHh
Q 029517 131 ADELARYLDLKKLDERVCMFEAVSGYDGFGIKESVEWLVEVMER 174 (192)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~e~~~~i~~~i~~ 174 (192)
.+++.++++. ......+++++||++|.|+++++++|.+.+..
T Consensus 161 ~~~i~~~l~~--~~~~~~~ii~vSA~~g~gI~~L~~~L~~~l~~ 202 (411)
T PRK04000 161 YEQIKEFVKG--TVAENAPIIPVSALHKVNIDALIEAIEEEIPT 202 (411)
T ss_pred HHHHHHHhcc--ccCCCCeEEEEECCCCcCHHHHHHHHHHhCCC
Confidence 1334444331 01235789999999999999999999886643
No 214
>PRK09554 feoB ferrous iron transport protein B; Reviewed
Probab=99.55 E-value=3.4e-14 Score=123.55 Aligned_cols=139 Identities=19% Similarity=0.211 Sum_probs=93.4
Q ss_pred ccccHHHHHHHHhhhhccCCCCCCCCCCCCcceEEEEEEecCEEEEEEeCCCCcccHHH----------HHHhh--hcCC
Q 029517 14 TKTEFHTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPGLRSI----------WEKYY--EEAH 81 (192)
Q Consensus 14 kst~~~~l~~~~~~~~~~~~~~~~~~~~~T~g~~~~~~~~~~~~~~i~D~~G~~~~~~~----------~~~~~--~~~d 81 (192)
|||+||+|.+... ++.+. ...|.......+..++.++.+|||||+.++... ...++ +.+|
T Consensus 16 KSTLfN~Ltg~~~----~vgn~----pGvTve~k~g~~~~~~~~i~lvDtPG~ysl~~~~~~~s~~E~i~~~~l~~~~aD 87 (772)
T PRK09554 16 KTTLFNQLTGARQ----RVGNW----AGVTVERKEGQFSTTDHQVTLVDLPGTYSLTTISSQTSLDEQIACHYILSGDAD 87 (772)
T ss_pred HHHHHHHHhCCCC----ccCCC----CCceEeeEEEEEEcCceEEEEEECCCccccccccccccHHHHHHHHHHhccCCC
Confidence 8899998865432 22232 233444444556777889999999998765321 22233 4799
Q ss_pred EEEEEEeCCCcccHHHHHHHHHHHHhCCCCCCCcEEEEEeCCCCCCCCC-HHHHHhHcCccccCCcceEEEEeeecCCCC
Q 029517 82 AVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAVS-ADELARYLDLKKLDERVCMFEAVSGYDGFG 160 (192)
Q Consensus 82 ~ii~v~D~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~~~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~g 160 (192)
++++|+|+++.++ ...+..++.+. ++|+++++||+|+.+... ..+..+..+ ..+.+++++||++|.|
T Consensus 88 ~vI~VvDat~ler---~l~l~~ql~e~----giPvIvVlNK~Dl~~~~~i~id~~~L~~-----~LG~pVvpiSA~~g~G 155 (772)
T PRK09554 88 LLINVVDASNLER---NLYLTLQLLEL----GIPCIVALNMLDIAEKQNIRIDIDALSA-----RLGCPVIPLVSTRGRG 155 (772)
T ss_pred EEEEEecCCcchh---hHHHHHHHHHc----CCCEEEEEEchhhhhccCcHHHHHHHHH-----HhCCCEEEEEeecCCC
Confidence 9999999987543 33444454433 689999999999864222 222333222 3467899999999999
Q ss_pred HHHHHHHHHHHH
Q 029517 161 IKESVEWLVEVM 172 (192)
Q Consensus 161 i~e~~~~i~~~i 172 (192)
++++.+.+.+..
T Consensus 156 IdeL~~~I~~~~ 167 (772)
T PRK09554 156 IEALKLAIDRHQ 167 (772)
T ss_pred HHHHHHHHHHhh
Confidence 999999988754
No 215
>KOG0462 consensus Elongation factor-type GTP-binding protein [Translation, ribosomal structure and biogenesis]
Probab=99.53 E-value=1.1e-13 Score=112.88 Aligned_cols=116 Identities=17% Similarity=0.180 Sum_probs=88.0
Q ss_pred ecCEEEEEEeCCCCcccHHHHHHhhhcCCEEEEEEeCCCcccHHHHHHHHHHHHhCCCCCCCcEEEEEeCCCCCCCCCHH
Q 029517 53 VSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAVSAD 132 (192)
Q Consensus 53 ~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ii~v~D~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~~~~~~ 132 (192)
+..+.++++|||||-+|+.....-+..|+|+|+|+|+...-.-+.+..+...+. .+.-+|.|+||+|++.+. .+
T Consensus 122 ~~~ylLNLIDTPGHvDFs~EVsRslaac~G~lLvVDA~qGvqAQT~anf~lAfe-----~~L~iIpVlNKIDlp~ad-pe 195 (650)
T KOG0462|consen 122 GQSYLLNLIDTPGHVDFSGEVSRSLAACDGALLVVDASQGVQAQTVANFYLAFE-----AGLAIIPVLNKIDLPSAD-PE 195 (650)
T ss_pred CCceEEEeecCCCcccccceehehhhhcCceEEEEEcCcCchHHHHHHHHHHHH-----cCCeEEEeeeccCCCCCC-HH
Confidence 345899999999999999999999999999999999987754555444444332 357789999999999753 33
Q ss_pred HHHhHcCccccCCcceEEEEeeecCCCCHHHHHHHHHHHHHhc
Q 029517 133 ELARYLDLKKLDERVCMFEAVSGYDGFGIKESVEWLVEVMERS 175 (192)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~e~~~~i~~~i~~~ 175 (192)
.+.+.+. +.+....-+++.+|||+|.|+.+++++|++.+..-
T Consensus 196 ~V~~q~~-~lF~~~~~~~i~vSAK~G~~v~~lL~AII~rVPpP 237 (650)
T KOG0462|consen 196 RVENQLF-ELFDIPPAEVIYVSAKTGLNVEELLEAIIRRVPPP 237 (650)
T ss_pred HHHHHHH-HHhcCCccceEEEEeccCccHHHHHHHHHhhCCCC
Confidence 3333322 11124566899999999999999999999988643
No 216
>cd01884 EF_Tu EF-Tu subfamily. This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=99.53 E-value=2.7e-13 Score=100.26 Aligned_cols=144 Identities=15% Similarity=0.083 Sum_probs=88.6
Q ss_pred ccccHHHHHHHHhhhhcc------CCCCCCC--CCCCCcceEEEEEEecCEEEEEEeCCCCcccHHHHHHhhhcCCEEEE
Q 029517 14 TKTEFHTLLEKLKSVYSN------VEGLPPD--RIVPTVGLNIGRIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVF 85 (192)
Q Consensus 14 kst~~~~l~~~~~~~~~~------~~~~~~~--~~~~T~g~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ii~ 85 (192)
|||+.++|++........ ..+.... ....|+......+..++.++.++||||+.+|.......+..+|++++
T Consensus 15 KTTL~~~Ll~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~i~~iDtPG~~~~~~~~~~~~~~~D~~il 94 (195)
T cd01884 15 KTTLTAAITKVLAKKGGAKFKKYDEIDKAPEEKARGITINTAHVEYETANRHYAHVDCPGHADYIKNMITGAAQMDGAIL 94 (195)
T ss_pred HHHHHHHHHHHHHhcccccccccccccCChhhhhcCccEEeeeeEecCCCeEEEEEECcCHHHHHHHHHHHhhhCCEEEE
Confidence 899999998764321000 0001111 22334444444566667889999999999888877778889999999
Q ss_pred EEeCCCcccHHHHHHHHHHHHhCCCCCCCc-EEEEEeCCCCCCCCC-H----HHHHhHcCccccCCcceEEEEeeecCCC
Q 029517 86 VIDAACPSRFEDSKTALEKVLRNEDLQGAP-LLILANKQDLPDAVS-A----DELARYLDLKKLDERVCMFEAVSGYDGF 159 (192)
Q Consensus 86 v~D~~~~~s~~~~~~~~~~i~~~~~~~~~p-iiiv~nK~Dl~~~~~-~----~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 159 (192)
|+|+...-.-+ ....+..+... ++| +++++||+|+..... . +++.+.+..........+++++||++|.
T Consensus 95 Vvda~~g~~~~-~~~~~~~~~~~----~~~~iIvviNK~D~~~~~~~~~~~~~~i~~~l~~~g~~~~~v~iipiSa~~g~ 169 (195)
T cd01884 95 VVSATDGPMPQ-TREHLLLARQV----GVPYIVVFLNKADMVDDEELLELVEMEVRELLSKYGFDGDNTPIVRGSALKAL 169 (195)
T ss_pred EEECCCCCcHH-HHHHHHHHHHc----CCCcEEEEEeCCCCCCcHHHHHHHHHHHHHHHHHhcccccCCeEEEeeCcccc
Confidence 99997653222 22333333322 466 789999999863111 1 1233333211122346889999999999
Q ss_pred CHH
Q 029517 160 GIK 162 (192)
Q Consensus 160 gi~ 162 (192)
|+.
T Consensus 170 n~~ 172 (195)
T cd01884 170 EGD 172 (195)
T ss_pred CCC
Confidence 863
No 217
>smart00275 G_alpha G protein alpha subunit. Subunit of G proteins that contains the guanine nucleotide binding site
Probab=99.50 E-value=7.5e-13 Score=105.74 Aligned_cols=137 Identities=17% Similarity=0.320 Sum_probs=109.1
Q ss_pred CCCCCcceEEEEEEecCEEEEEEeCCCCcccHHHHHHhhhcCCEEEEEEeCCC----------cccHHHHHHHHHHHHhC
Q 029517 39 RIVPTVGLNIGRIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAAC----------PSRFEDSKTALEKVLRN 108 (192)
Q Consensus 39 ~~~~T~g~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ii~v~D~~~----------~~s~~~~~~~~~~i~~~ 108 (192)
...||.|++...+..+++.+.+||++|+...+..|..++.+++++|+|+|+++ ...+.+....+..+...
T Consensus 167 ~r~~T~Gi~~~~f~~~~~~~~~~DvgGqr~~R~kW~~~f~~v~~IiFvvdlSd~d~~~~Ed~~~nrl~esl~~f~~l~~~ 246 (342)
T smart00275 167 SRVPTTGIQETAFIVKKLFFRMFDVGGQRSERKKWIHCFDNVTAIIFCVALSEYDQVLEEDESTNRMQESLNLFESICNS 246 (342)
T ss_pred eeCCccceEEEEEEECCeEEEEEecCCchhhhhhHHHHhCCCCEEEEEEECcccccchhccCcchHHHHHHHHHHHHHcC
Confidence 45789999999999999999999999999999999999999999999999986 34677888888888887
Q ss_pred CCCCCCcEEEEEeCCCCCC-----------------CCCHHHHHhHcCc----ccc--CCcceEEEEeeecCCCCHHHHH
Q 029517 109 EDLQGAPLLILANKQDLPD-----------------AVSADELARYLDL----KKL--DERVCMFEAVSGYDGFGIKESV 165 (192)
Q Consensus 109 ~~~~~~piiiv~nK~Dl~~-----------------~~~~~~~~~~~~~----~~~--~~~~~~~~~~Sa~~~~gi~e~~ 165 (192)
....+.|+++++||.|+.. ..+.+.+.+++.. ... ..+.+..+.++|.+..++..+|
T Consensus 247 ~~~~~~piil~~NK~D~~~~Kl~~~~l~~~fp~y~g~~~~~~~~~yi~~~F~~~~~~~~~r~~y~h~t~a~Dt~~~~~v~ 326 (342)
T smart00275 247 RWFANTSIILFLNKIDLFEEKIKKVPLVDYFPDYKGPNDYEAAAKFIKQKFLRLNRNSSRKSIYHHFTCATDTRNIRVVF 326 (342)
T ss_pred ccccCCcEEEEEecHHhHHHHhCCCchhccCCCCCCCCCHHHHHHHHHHHHHHhccCCCCceEEEEEeeecccHHHHHHH
Confidence 6667899999999999732 1233344443331 111 1246778889999999999999
Q ss_pred HHHHHHHHhc
Q 029517 166 EWLVEVMERS 175 (192)
Q Consensus 166 ~~i~~~i~~~ 175 (192)
+.+.+.+...
T Consensus 327 ~~v~~~I~~~ 336 (342)
T smart00275 327 DAVKDIILQR 336 (342)
T ss_pred HHHHHHHHHH
Confidence 9988877654
No 218
>COG0218 Predicted GTPase [General function prediction only]
Probab=99.50 E-value=4.1e-13 Score=97.55 Aligned_cols=145 Identities=20% Similarity=0.239 Sum_probs=98.3
Q ss_pred hhccccHHHHHHHHhhhhccCCCCCCCCCCCCcceEEEEEEecCEEEEEEeCCC----------CcccHHHHHHhhhc--
Q 029517 12 IFTKTEFHTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGG----------QPGLRSIWEKYYEE-- 79 (192)
Q Consensus 12 ~~kst~~~~l~~~~~~~~~~~~~~~~~~~~~T~g~~~~~~~~~~~~~~i~D~~G----------~~~~~~~~~~~~~~-- 79 (192)
+=|||++|+|+++..- ..+..++..|.-+++..+... +.++|.|| .+.+..+...|++.
T Consensus 35 VGKSSlIN~l~~~k~L------ArtSktPGrTq~iNff~~~~~---~~lVDlPGYGyAkv~k~~~e~w~~~i~~YL~~R~ 105 (200)
T COG0218 35 VGKSSLINALTNQKNL------ARTSKTPGRTQLINFFEVDDE---LRLVDLPGYGYAKVPKEVKEKWKKLIEEYLEKRA 105 (200)
T ss_pred ccHHHHHHHHhCCcce------eecCCCCCccceeEEEEecCc---EEEEeCCCcccccCCHHHHHHHHHHHHHHHhhch
Confidence 4589999999997643 222334466666777766543 88999999 34556666777764
Q ss_pred -CCEEEEEEeCCCcccHHHHHHHHHHHHhCCCCCCCcEEEEEeCCCCCCCCCH----HHHHhHcCccccCCcceE--EEE
Q 029517 80 -AHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAVSA----DELARYLDLKKLDERVCM--FEA 152 (192)
Q Consensus 80 -~d~ii~v~D~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~~~~~----~~~~~~~~~~~~~~~~~~--~~~ 152 (192)
..++++++|+..+-. .....+.++... .++|+++++||+|....... ..+.+.+.. ..... ++.
T Consensus 106 ~L~~vvlliD~r~~~~--~~D~em~~~l~~---~~i~~~vv~tK~DKi~~~~~~k~l~~v~~~l~~----~~~~~~~~~~ 176 (200)
T COG0218 106 NLKGVVLLIDARHPPK--DLDREMIEFLLE---LGIPVIVVLTKADKLKKSERNKQLNKVAEELKK----PPPDDQWVVL 176 (200)
T ss_pred hheEEEEEEECCCCCc--HHHHHHHHHHHH---cCCCeEEEEEccccCChhHHHHHHHHHHHHhcC----CCCccceEEE
Confidence 577899999976533 322344444444 48999999999998764333 334433331 11222 888
Q ss_pred eeecCCCCHHHHHHHHHHHHHh
Q 029517 153 VSGYDGFGIKESVEWLVEVMER 174 (192)
Q Consensus 153 ~Sa~~~~gi~e~~~~i~~~i~~ 174 (192)
.|+..+.|++++...|.+.+..
T Consensus 177 ~ss~~k~Gi~~l~~~i~~~~~~ 198 (200)
T COG0218 177 FSSLKKKGIDELKAKILEWLKE 198 (200)
T ss_pred EecccccCHHHHHHHHHHHhhc
Confidence 9999999999999999876653
No 219
>cd00066 G-alpha G protein alpha subunit. The alpha subunit of G proteins contains the guanine nucleotide binding site. The heterotrimeric GNP-binding proteins are signal transducers that communicate signals from many hormones, neurotransmitters, chemokines, and autocrine and paracrine factors. Extracellular signals are received by receptors, which activate the G proteins, which in turn route the signals to several distinct intracellular signaling pathways. The alpha subunit of G proteins is a weak GTPase. In the resting state, heterotrimeric G proteins are associated at the cytosolic face of the plasma membrane and the alpha subunit binds to GDP. Upon activation by a receptor GDP is replaced with GTP, and the G-alpha/GTP complex dissociates from the beta and gamma subunits. This results in activation of downstream signaling pathways, such as cAMP synthesis by adenylyl cyclase, which is terminated when GTP is hydrolized and the heterotrimers reconstitute.
Probab=99.48 E-value=7.8e-13 Score=104.77 Aligned_cols=136 Identities=19% Similarity=0.351 Sum_probs=107.7
Q ss_pred CCCCcceEEEEEEecCEEEEEEeCCCCcccHHHHHHhhhcCCEEEEEEeCCCc----------ccHHHHHHHHHHHHhCC
Q 029517 40 IVPTVGLNIGRIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACP----------SRFEDSKTALEKVLRNE 109 (192)
Q Consensus 40 ~~~T~g~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ii~v~D~~~~----------~s~~~~~~~~~~i~~~~ 109 (192)
..||.|+....+..+++.+.+||++|+...+..|..++.+++++++|+|+++- ..+.+....+..+....
T Consensus 145 r~~T~Gi~~~~f~~~~~~~~~~DvgGq~~~R~kW~~~f~~v~~iifvv~lsd~d~~~~e~~~~nrl~esl~~f~~i~~~~ 224 (317)
T cd00066 145 RVKTTGIVETKFTIKNLKFRMFDVGGQRSERKKWIHCFEDVTAIIFVVALSEYDQVLFEDESTNRMQESLNLFDSICNSR 224 (317)
T ss_pred ecccCCeeEEEEEecceEEEEECCCCCcccchhHHHHhCCCCEEEEEEEchhcccccccCCcchHHHHHHHHHHHHHhCc
Confidence 46888999889999999999999999999999999999999999999999863 56777778888888776
Q ss_pred CCCCCcEEEEEeCCCCCC------------------CCCHHHHHhHcCcc-----ccCCcceEEEEeeecCCCCHHHHHH
Q 029517 110 DLQGAPLLILANKQDLPD------------------AVSADELARYLDLK-----KLDERVCMFEAVSGYDGFGIKESVE 166 (192)
Q Consensus 110 ~~~~~piiiv~nK~Dl~~------------------~~~~~~~~~~~~~~-----~~~~~~~~~~~~Sa~~~~gi~e~~~ 166 (192)
...+.|+++++||.|+.. ..+.+.+.+++... .-..+.+..+.++|.+..++..+|+
T Consensus 225 ~~~~~pill~~NK~D~f~~ki~~~~l~~~fp~y~g~~~~~~~~~~~i~~~F~~~~~~~~~~~~~~~t~a~Dt~~i~~vf~ 304 (317)
T cd00066 225 WFANTSIILFLNKKDLFEEKIKKSPLTDYFPDYTGPPNDYEEAAKFIRKKFLDLNRNPNKEIYPHFTCATDTENIRFVFD 304 (317)
T ss_pred cccCCCEEEEccChHHHHHhhcCCCccccCCCCCCCCCCHHHHHHHHHHHHHHhhcCCCCeEEEEeccccchHHHHHHHH
Confidence 667899999999999632 12334444444311 0113567778899999999999999
Q ss_pred HHHHHHHhc
Q 029517 167 WLVEVMERS 175 (192)
Q Consensus 167 ~i~~~i~~~ 175 (192)
.+.+.+...
T Consensus 305 ~v~~~i~~~ 313 (317)
T cd00066 305 AVKDIILQN 313 (317)
T ss_pred HHHHHHHHH
Confidence 988877654
No 220
>COG0536 Obg Predicted GTPase [General function prediction only]
Probab=99.45 E-value=2e-12 Score=100.54 Aligned_cols=151 Identities=24% Similarity=0.316 Sum_probs=104.4
Q ss_pred HHHHHHHhhhhccCCCCCCCCCCCCcceEEEEEEecCEEEEEEeCCCC-----c--ccHHHHHHhhhcCCEEEEEEeCCC
Q 029517 19 HTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQ-----P--GLRSIWEKYYEEAHAVVFVIDAAC 91 (192)
Q Consensus 19 ~~l~~~~~~~~~~~~~~~~~~~~~T~g~~~~~~~~~~~~~~i~D~~G~-----~--~~~~~~~~~~~~~d~ii~v~D~~~ 91 (192)
.||++.++++.+++++|++++..|.+|+-.. ...-.+.+-|+||. + -.......++++|.++++|+|++.
T Consensus 173 STlls~vS~AkPKIadYpFTTL~PnLGvV~~---~~~~sfv~ADIPGLIEGAs~G~GLG~~FLrHIERt~vL~hviD~s~ 249 (369)
T COG0536 173 STLLSAVSAAKPKIADYPFTTLVPNLGVVRV---DGGESFVVADIPGLIEGASEGVGLGLRFLRHIERTRVLLHVIDLSP 249 (369)
T ss_pred HHHHHHHhhcCCcccCCccccccCcccEEEe---cCCCcEEEecCcccccccccCCCccHHHHHHHHhhheeEEEEecCc
Confidence 3777788899999999999999999998433 33457999999992 1 223345567889999999999985
Q ss_pred ccc---HHHHHHHHHHHHhC-CCCCCCcEEEEEeCCCCCC-CCCHHHHHhHcCccccCCcceEE-EEeeecCCCCHHHHH
Q 029517 92 PSR---FEDSKTALEKVLRN-EDLQGAPLLILANKQDLPD-AVSADELARYLDLKKLDERVCMF-EAVSGYDGFGIKESV 165 (192)
Q Consensus 92 ~~s---~~~~~~~~~~i~~~-~~~~~~piiiv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~~-~~~Sa~~~~gi~e~~ 165 (192)
.+. .+.......++..+ ..+.++|.++|+||+|+.. ....+...+.+. ...+... +.+||.++.|++++.
T Consensus 250 ~~~~dp~~~~~~i~~EL~~Y~~~L~~K~~ivv~NKiD~~~~~e~~~~~~~~l~----~~~~~~~~~~ISa~t~~g~~~L~ 325 (369)
T COG0536 250 IDGRDPIEDYQTIRNELEKYSPKLAEKPRIVVLNKIDLPLDEEELEELKKALA----EALGWEVFYLISALTREGLDELL 325 (369)
T ss_pred ccCCCHHHHHHHHHHHHHHhhHHhccCceEEEEeccCCCcCHHHHHHHHHHHH----HhcCCCcceeeehhcccCHHHHH
Confidence 442 44444444444443 2235899999999999654 222233333332 1122221 129999999999999
Q ss_pred HHHHHHHHhcc
Q 029517 166 EWLVEVMERSK 176 (192)
Q Consensus 166 ~~i~~~i~~~~ 176 (192)
..+.+.+....
T Consensus 326 ~~~~~~l~~~~ 336 (369)
T COG0536 326 RALAELLEETK 336 (369)
T ss_pred HHHHHHHHHhh
Confidence 99998877664
No 221
>COG1084 Predicted GTPase [General function prediction only]
Probab=99.44 E-value=4.5e-12 Score=98.11 Aligned_cols=143 Identities=21% Similarity=0.272 Sum_probs=106.2
Q ss_pred HHHHHHhhhhccCCCCCCCCCCCCcceEEEEEEecCEEEEEEeCCCCcc-c-------HHHHHHhhhc-CCEEEEEEeCC
Q 029517 20 TLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPG-L-------RSIWEKYYEE-AHAVVFVIDAA 90 (192)
Q Consensus 20 ~l~~~~~~~~~~~~~~~~~~~~~T~g~~~~~~~~~~~~~~i~D~~G~~~-~-------~~~~~~~~~~-~d~ii~v~D~~ 90 (192)
||++.++.+-+++++|+ ..|-|+.++++..+..++|+.||||.-+ - ....-..++. .++|+|++|++
T Consensus 183 Slv~~lT~AkpEvA~YP----FTTK~i~vGhfe~~~~R~QvIDTPGlLDRPl~ErN~IE~qAi~AL~hl~~~IlF~~D~S 258 (346)
T COG1084 183 SLVRKLTTAKPEVAPYP----FTTKGIHVGHFERGYLRIQVIDTPGLLDRPLEERNEIERQAILALRHLAGVILFLFDPS 258 (346)
T ss_pred HHHHHHhcCCCccCCCC----ccccceeEeeeecCCceEEEecCCcccCCChHHhcHHHHHHHHHHHHhcCeEEEEEcCc
Confidence 67777788888888887 6678899999999999999999999321 1 1111112332 68899999997
Q ss_pred --CcccHHHHHHHHHHHHhCCCCCCCcEEEEEeCCCCCCCCCHHHHHhHcCccccCCcceEEEEeeecCCCCHHHHHHHH
Q 029517 91 --CPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAVSADELARYLDLKKLDERVCMFEAVSGYDGFGIKESVEWL 168 (192)
Q Consensus 91 --~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~e~~~~i 168 (192)
+.-+.+....++..+... .+.|+++|+||+|.......+++...+.. ..+.....+++..+.+++.+.+.+
T Consensus 259 e~cgy~lE~Q~~L~~eIk~~---f~~p~v~V~nK~D~~~~e~~~~~~~~~~~----~~~~~~~~~~~~~~~~~d~~~~~v 331 (346)
T COG1084 259 ETCGYSLEEQISLLEEIKEL---FKAPIVVVINKIDIADEEKLEEIEASVLE----EGGEEPLKISATKGCGLDKLREEV 331 (346)
T ss_pred cccCCCHHHHHHHHHHHHHh---cCCCeEEEEecccccchhHHHHHHHHHHh----hccccccceeeeehhhHHHHHHHH
Confidence 456788888888888776 35899999999999876566666666541 223446678899999999888887
Q ss_pred HHHHH
Q 029517 169 VEVME 173 (192)
Q Consensus 169 ~~~i~ 173 (192)
.....
T Consensus 332 ~~~a~ 336 (346)
T COG1084 332 RKTAL 336 (346)
T ss_pred HHHhh
Confidence 77643
No 222
>cd04169 RF3 RF3 subfamily. Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts.
Probab=99.44 E-value=3.1e-12 Score=99.03 Aligned_cols=121 Identities=20% Similarity=0.181 Sum_probs=79.6
Q ss_pred ccccHHHHHHHHhhhh--ccCC-----CCCCC-------CCCCCcceEEEEEEecCEEEEEEeCCCCcccHHHHHHhhhc
Q 029517 14 TKTEFHTLLEKLKSVY--SNVE-----GLPPD-------RIVPTVGLNIGRIEVSNSKLVFWDLGGQPGLRSIWEKYYEE 79 (192)
Q Consensus 14 kst~~~~l~~~~~~~~--~~~~-----~~~~~-------~~~~T~g~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~ 79 (192)
|||++++|+...-.+. ..+. +.+.. ....|+......+..++.++.+|||||+.+|......+++.
T Consensus 15 KTTL~e~ll~~~g~i~~~g~v~~~~~~~~t~~D~~~~e~~rg~si~~~~~~~~~~~~~i~liDTPG~~df~~~~~~~l~~ 94 (267)
T cd04169 15 KTTLTEKLLLFGGAIREAGAVKARKSRKHATSDWMEIEKQRGISVTSSVMQFEYRDCVINLLDTPGHEDFSEDTYRTLTA 94 (267)
T ss_pred HHHHHHHHHHhcCCcccCceecccccCCCccCCCcHHHHhCCCCeEEEEEEEeeCCEEEEEEECCCchHHHHHHHHHHHH
Confidence 8999999986532211 1111 11111 11334445555788889999999999999998877788999
Q ss_pred CCEEEEEEeCCCcccHHHHHHHHHHHHhCCCCCCCcEEEEEeCCCCCCCCC---HHHHHhHcC
Q 029517 80 AHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAVS---ADELARYLD 139 (192)
Q Consensus 80 ~d~ii~v~D~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~~~~---~~~~~~~~~ 139 (192)
+|++|+|+|+++..... ...++.. ... .++|+++++||+|+..... .+++.+.+.
T Consensus 95 aD~~IlVvda~~g~~~~-~~~i~~~-~~~---~~~P~iivvNK~D~~~a~~~~~~~~l~~~l~ 152 (267)
T cd04169 95 VDSAVMVIDAAKGVEPQ-TRKLFEV-CRL---RGIPIITFINKLDREGRDPLELLDEIEEELG 152 (267)
T ss_pred CCEEEEEEECCCCccHH-HHHHHHH-HHh---cCCCEEEEEECCccCCCCHHHHHHHHHHHHC
Confidence 99999999998753322 2233322 222 4689999999999876533 355555554
No 223
>PRK13351 elongation factor G; Reviewed
Probab=99.44 E-value=2.8e-12 Score=111.35 Aligned_cols=109 Identities=20% Similarity=0.167 Sum_probs=80.2
Q ss_pred ccccHHHHHHHHhhh--hccCC-CCCC-------CCCCCCcceEEEEEEecCEEEEEEeCCCCcccHHHHHHhhhcCCEE
Q 029517 14 TKTEFHTLLEKLKSV--YSNVE-GLPP-------DRIVPTVGLNIGRIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAV 83 (192)
Q Consensus 14 kst~~~~l~~~~~~~--~~~~~-~~~~-------~~~~~T~g~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~i 83 (192)
|||++++|+...-.+ ...+. +.+. ..+.+|++.....+.....++.+|||||+.+|...+..+++.+|++
T Consensus 21 KTtL~~~ll~~~g~~~~~~~v~~~~~~~d~~~~e~~r~~ti~~~~~~~~~~~~~i~liDtPG~~df~~~~~~~l~~aD~~ 100 (687)
T PRK13351 21 KTTLTERILFYTGKIHKMGEVEDGTTVTDWMPQEQERGITIESAATSCDWDNHRINLIDTPGHIDFTGEVERSLRVLDGA 100 (687)
T ss_pred chhHHHHHHHhcCCccccccccCCcccCCCCHHHHhcCCCcccceEEEEECCEEEEEEECCCcHHHHHHHHHHHHhCCEE
Confidence 899999998643211 00111 1111 1357788888888888899999999999999999999999999999
Q ss_pred EEEEeCCCcccHHHHHHHHHHHHhCCCCCCCcEEEEEeCCCCCC
Q 029517 84 VFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPD 127 (192)
Q Consensus 84 i~v~D~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~ 127 (192)
++|+|+++.........| ..+.. .++|+++++||+|+..
T Consensus 101 ilVvd~~~~~~~~~~~~~-~~~~~----~~~p~iiviNK~D~~~ 139 (687)
T PRK13351 101 VVVFDAVTGVQPQTETVW-RQADR----YGIPRLIFINKMDRVG 139 (687)
T ss_pred EEEEeCCCCCCHHHHHHH-HHHHh----cCCCEEEEEECCCCCC
Confidence 999999987666554333 22322 3689999999999875
No 224
>PRK00741 prfC peptide chain release factor 3; Provisional
Probab=99.43 E-value=2.1e-12 Score=108.42 Aligned_cols=81 Identities=17% Similarity=0.221 Sum_probs=60.9
Q ss_pred CcceEEEEEEecCEEEEEEeCCCCcccHHHHHHhhhcCCEEEEEEeCCCcccHHHHHHHHHHHHhCCCCCCCcEEEEEeC
Q 029517 43 TVGLNIGRIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANK 122 (192)
Q Consensus 43 T~g~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ii~v~D~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK 122 (192)
|+......+.++++++.+|||||+.+|......+++.+|++|+|+|+++..... ...++... .. .++|+++++||
T Consensus 66 Si~~~~~~~~~~~~~inliDTPG~~df~~~~~~~l~~aD~aIlVvDa~~gv~~~-t~~l~~~~-~~---~~iPiiv~iNK 140 (526)
T PRK00741 66 SVTSSVMQFPYRDCLINLLDTPGHEDFSEDTYRTLTAVDSALMVIDAAKGVEPQ-TRKLMEVC-RL---RDTPIFTFINK 140 (526)
T ss_pred ceeeeeEEEEECCEEEEEEECCCchhhHHHHHHHHHHCCEEEEEEecCCCCCHH-HHHHHHHH-Hh---cCCCEEEEEEC
Confidence 344444567788899999999999999988888899999999999998753222 22333322 22 47999999999
Q ss_pred CCCCCC
Q 029517 123 QDLPDA 128 (192)
Q Consensus 123 ~Dl~~~ 128 (192)
+|+...
T Consensus 141 ~D~~~a 146 (526)
T PRK00741 141 LDRDGR 146 (526)
T ss_pred Cccccc
Confidence 998653
No 225
>PRK12736 elongation factor Tu; Reviewed
Probab=99.43 E-value=1.9e-12 Score=105.58 Aligned_cols=128 Identities=16% Similarity=0.103 Sum_probs=82.3
Q ss_pred CCCcceEEEEEEecCEEEEEEeCCCCcccHHHHHHhhhcCCEEEEEEeCCCcccHHHHHHHHHHHHhCCCCCCCc-EEEE
Q 029517 41 VPTVGLNIGRIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAP-LLIL 119 (192)
Q Consensus 41 ~~T~g~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ii~v~D~~~~~s~~~~~~~~~~i~~~~~~~~~p-iiiv 119 (192)
..|+......+..+...+.++||||+++|......-...+|++++|+|++....-+ ..+.+..+... ++| ++++
T Consensus 60 g~T~~~~~~~~~~~~~~i~~iDtPGh~~f~~~~~~~~~~~d~~llVvd~~~g~~~~-t~~~~~~~~~~----g~~~~Ivv 134 (394)
T PRK12736 60 GITINTAHVEYETEKRHYAHVDCPGHADYVKNMITGAAQMDGAILVVAATDGPMPQ-TREHILLARQV----GVPYLVVF 134 (394)
T ss_pred CccEEEEeeEecCCCcEEEEEECCCHHHHHHHHHHHHhhCCEEEEEEECCCCCchh-HHHHHHHHHHc----CCCEEEEE
Confidence 44555544455556778999999999988777666678899999999998643222 22333333322 577 6789
Q ss_pred EeCCCCCCCCC-H----HHHHhHcCccccCCcceEEEEeeecCCC--------CHHHHHHHHHHHHH
Q 029517 120 ANKQDLPDAVS-A----DELARYLDLKKLDERVCMFEAVSGYDGF--------GIKESVEWLVEVME 173 (192)
Q Consensus 120 ~nK~Dl~~~~~-~----~~~~~~~~~~~~~~~~~~~~~~Sa~~~~--------gi~e~~~~i~~~i~ 173 (192)
+||+|+.+... . +++.+++..........+++++||++|. ++.++++.+.+.+.
T Consensus 135 iNK~D~~~~~~~~~~i~~~i~~~l~~~~~~~~~~~ii~vSa~~g~~~~~~~~~~i~~Ll~~l~~~lp 201 (394)
T PRK12736 135 LNKVDLVDDEELLELVEMEVRELLSEYDFPGDDIPVIRGSALKALEGDPKWEDAIMELMDAVDEYIP 201 (394)
T ss_pred EEecCCcchHHHHHHHHHHHHHHHHHhCCCcCCccEEEeeccccccCCCcchhhHHHHHHHHHHhCC
Confidence 99999864211 1 2333333211111224689999999983 57777777776554
No 226
>COG0481 LepA Membrane GTPase LepA [Cell envelope biogenesis, outer membrane]
Probab=99.42 E-value=5e-13 Score=107.67 Aligned_cols=113 Identities=19% Similarity=0.217 Sum_probs=86.6
Q ss_pred cCEEEEEEeCCCCcccHHHHHHhhhcCCEEEEEEeCCCcccHHHHHHHHHHHHhCCCCCCCcEEEEEeCCCCCCCCCH--
Q 029517 54 SNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAVSA-- 131 (192)
Q Consensus 54 ~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ii~v~D~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~~~~~-- 131 (192)
..+.+.+.|||||-+|......-+..|.|+++|+|++..-.-+.+...+..+. .+.-++-|+||+||+.+...
T Consensus 74 ~~Y~lnlIDTPGHVDFsYEVSRSLAACEGalLvVDAsQGveAQTlAN~YlAle-----~~LeIiPViNKIDLP~Adperv 148 (603)
T COG0481 74 ETYVLNLIDTPGHVDFSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALE-----NNLEIIPVLNKIDLPAADPERV 148 (603)
T ss_pred CEEEEEEcCCCCccceEEEehhhHhhCCCcEEEEECccchHHHHHHHHHHHHH-----cCcEEEEeeecccCCCCCHHHH
Confidence 56899999999999998888888899999999999998754444444443332 35789999999999985322
Q ss_pred -HHHHhHcCccccCCcceEEEEeeecCCCCHHHHHHHHHHHHHhcc
Q 029517 132 -DELARYLDLKKLDERVCMFEAVSGYDGFGIKESVEWLVEVMERSK 176 (192)
Q Consensus 132 -~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~e~~~~i~~~i~~~~ 176 (192)
.++.+.+. ......+.+|||+|.||++++++|++.+..-+
T Consensus 149 k~eIe~~iG-----id~~dav~~SAKtG~gI~~iLe~Iv~~iP~P~ 189 (603)
T COG0481 149 KQEIEDIIG-----IDASDAVLVSAKTGIGIEDVLEAIVEKIPPPK 189 (603)
T ss_pred HHHHHHHhC-----CCcchheeEecccCCCHHHHHHHHHhhCCCCC
Confidence 23444443 33456788999999999999999999886544
No 227
>PLN00043 elongation factor 1-alpha; Provisional
Probab=99.42 E-value=2.4e-12 Score=106.21 Aligned_cols=118 Identities=19% Similarity=0.251 Sum_probs=82.6
Q ss_pred CCCcceEEEEEEecCEEEEEEeCCCCcccHHHHHHhhhcCCEEEEEEeCCCcccHH-------HHHHHHHHHHhCCCCCC
Q 029517 41 VPTVGLNIGRIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFE-------DSKTALEKVLRNEDLQG 113 (192)
Q Consensus 41 ~~T~g~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ii~v~D~~~~~s~~-------~~~~~~~~i~~~~~~~~ 113 (192)
.-|+...+..+..++..+.++|+|||++|.......+..+|++|+|+|+++. .++ ...+.+..... .+
T Consensus 70 GiTi~~~~~~~~~~~~~i~liDtPGh~df~~~~~~g~~~aD~aIlVVda~~G-~~e~g~~~~~qT~eh~~~~~~----~g 144 (447)
T PLN00043 70 GITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTG-GFEAGISKDGQTREHALLAFT----LG 144 (447)
T ss_pred CceEEEEEEEecCCCEEEEEEECCCHHHHHHHHHhhhhhccEEEEEEEcccC-ceecccCCCchHHHHHHHHHH----cC
Confidence 4466666667777889999999999999999888899999999999999863 232 22333222222 25
Q ss_pred C-cEEEEEeCCCCCC-CC-------CHHHHHhHcCccccCCcceEEEEeeecCCCCHHH
Q 029517 114 A-PLLILANKQDLPD-AV-------SADELARYLDLKKLDERVCMFEAVSGYDGFGIKE 163 (192)
Q Consensus 114 ~-piiiv~nK~Dl~~-~~-------~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~e 163 (192)
+ ++++++||+|+.. .. ..+++.++++...+....++++++||++|.|+.+
T Consensus 145 i~~iIV~vNKmD~~~~~~~~~~~~~i~~ei~~~l~~~g~~~~~~~~ipiSa~~G~ni~~ 203 (447)
T PLN00043 145 VKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPDKIPFVPISGFEGDNMIE 203 (447)
T ss_pred CCcEEEEEEcccCCchhhhHHHHHHHHHHHHHHHHHcCCCcccceEEEEeccccccccc
Confidence 5 5788999999862 11 1334555444222222357899999999999864
No 228
>COG0532 InfB Translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.42 E-value=6.9e-12 Score=102.63 Aligned_cols=148 Identities=20% Similarity=0.256 Sum_probs=96.2
Q ss_pred ccccHHHHHHHHhhhhccCCCCCCCCCCCCcceEEEEEEe-cCEEEEEEeCCCCcccHHHHHHhhhcCCEEEEEEeCCCc
Q 029517 14 TKTEFHTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEV-SNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACP 92 (192)
Q Consensus 14 kst~~~~l~~~~~~~~~~~~~~~~~~~~~T~g~~~~~~~~-~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ii~v~D~~~~ 92 (192)
|||++..+ |-+++ ....--.+...+|-..-..+. ....+.|.|||||+.|..++..=.+-+|++|+|+|+.+.
T Consensus 18 KTtLLD~I--R~t~V----a~~EaGGITQhIGA~~v~~~~~~~~~itFiDTPGHeAFt~mRaRGa~vtDIaILVVa~dDG 91 (509)
T COG0532 18 KTTLLDKI--RKTNV----AAGEAGGITQHIGAYQVPLDVIKIPGITFIDTPGHEAFTAMRARGASVTDIAILVVAADDG 91 (509)
T ss_pred ccchhhhH--hcCcc----ccccCCceeeEeeeEEEEeccCCCceEEEEcCCcHHHHHHHHhcCCccccEEEEEEEccCC
Confidence 67777777 43332 232223333333332222321 235899999999999999998877889999999999876
Q ss_pred ccHHHHHHHHHHHHhCCCCCCCcEEEEEeCCCCCCCCCHHHHHhHcCccccC----CcceEEEEeeecCCCCHHHHHHHH
Q 029517 93 SRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAVSADELARYLDLKKLD----ERVCMFEAVSGYDGFGIKESVEWL 168 (192)
Q Consensus 93 ~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~----~~~~~~~~~Sa~~~~gi~e~~~~i 168 (192)
--.+.+... + ..+. .+.|+++..||+|+++.. ++.+...+....+. .....++++||++|.|++++++.+
T Consensus 92 v~pQTiEAI-~-hak~---a~vP~iVAiNKiDk~~~n-p~~v~~el~~~gl~~E~~gg~v~~VpvSA~tg~Gi~eLL~~i 165 (509)
T COG0532 92 VMPQTIEAI-N-HAKA---AGVPIVVAINKIDKPEAN-PDKVKQELQEYGLVPEEWGGDVIFVPVSAKTGEGIDELLELI 165 (509)
T ss_pred cchhHHHHH-H-HHHH---CCCCEEEEEecccCCCCC-HHHHHHHHHHcCCCHhhcCCceEEEEeeccCCCCHHHHHHHH
Confidence 433332221 1 1222 589999999999999643 33333333322211 235889999999999999999988
Q ss_pred HHHHH
Q 029517 169 VEVME 173 (192)
Q Consensus 169 ~~~i~ 173 (192)
.-...
T Consensus 166 ll~ae 170 (509)
T COG0532 166 LLLAE 170 (509)
T ss_pred HHHHH
Confidence 75443
No 229
>COG2262 HflX GTPases [General function prediction only]
Probab=99.42 E-value=4.1e-12 Score=101.05 Aligned_cols=146 Identities=24% Similarity=0.320 Sum_probs=95.6
Q ss_pred ccccHHHHHHHHhhhhccCCCCCCCCCCCCcceEEEEEEec-CEEEEEEeCCCC---------cccHHHHHHhhhcCCEE
Q 029517 14 TKTEFHTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVS-NSKLVFWDLGGQ---------PGLRSIWEKYYEEAHAV 83 (192)
Q Consensus 14 kst~~~~l~~~~~~~~~~~~~~~~~~~~~T~g~~~~~~~~~-~~~~~i~D~~G~---------~~~~~~~~~~~~~~d~i 83 (192)
|||+||+|. +..... .+....|....-..+... +..+.+-||.|. +.|.+..+. ...+|.+
T Consensus 205 KSTL~N~LT----~~~~~~----~d~LFATLdpttR~~~l~~g~~vlLtDTVGFI~~LP~~LV~AFksTLEE-~~~aDll 275 (411)
T COG2262 205 KSTLFNALT----GADVYV----ADQLFATLDPTTRRIELGDGRKVLLTDTVGFIRDLPHPLVEAFKSTLEE-VKEADLL 275 (411)
T ss_pred HHHHHHHHh----ccCeec----cccccccccCceeEEEeCCCceEEEecCccCcccCChHHHHHHHHHHHH-hhcCCEE
Confidence 677777776 322222 334455555545555554 578999999993 234444443 4689999
Q ss_pred EEEEeCCCcccHHHHHHHHHHHHhCCCCCCCcEEEEEeCCCCCCCCCHHHHHhHcCccccCCcceEEEEeeecCCCCHHH
Q 029517 84 VFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAVSADELARYLDLKKLDERVCMFEAVSGYDGFGIKE 163 (192)
Q Consensus 84 i~v~D~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~e 163 (192)
+.|+|++++.-.+.+.. ...++......++|+++|.||+|+..... ....+.. ..+ ..+.+||++|.|++.
T Consensus 276 lhVVDaSdp~~~~~~~~-v~~vL~el~~~~~p~i~v~NKiD~~~~~~---~~~~~~~----~~~-~~v~iSA~~~~gl~~ 346 (411)
T COG2262 276 LHVVDASDPEILEKLEA-VEDVLAEIGADEIPIILVLNKIDLLEDEE---ILAELER----GSP-NPVFISAKTGEGLDL 346 (411)
T ss_pred EEEeecCChhHHHHHHH-HHHHHHHcCCCCCCEEEEEecccccCchh---hhhhhhh----cCC-CeEEEEeccCcCHHH
Confidence 99999999954444433 34444433335799999999999765322 1111210 112 588999999999999
Q ss_pred HHHHHHHHHHhcch
Q 029517 164 SVEWLVEVMERSKR 177 (192)
Q Consensus 164 ~~~~i~~~i~~~~~ 177 (192)
+.+.|.+.+.....
T Consensus 347 L~~~i~~~l~~~~~ 360 (411)
T COG2262 347 LRERIIELLSGLRT 360 (411)
T ss_pred HHHHHHHHhhhccc
Confidence 99999998885543
No 230
>TIGR00485 EF-Tu translation elongation factor TU. This alignment models orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts, one of several GTP-binding translation factors found by the more general pfam model GTP_EFTU. The eukaryotic conterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this model. EF-Tu is one of the most abundant proteins in bacteria, as well as one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=99.41 E-value=3.9e-12 Score=103.74 Aligned_cols=141 Identities=13% Similarity=0.060 Sum_probs=84.1
Q ss_pred ccccHHHHHHHHhhhhc-c-----CCCCCCC--CCCCCcceEEEEEEecCEEEEEEeCCCCcccHHHHHHhhhcCCEEEE
Q 029517 14 TKTEFHTLLEKLKSVYS-N-----VEGLPPD--RIVPTVGLNIGRIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVF 85 (192)
Q Consensus 14 kst~~~~l~~~~~~~~~-~-----~~~~~~~--~~~~T~g~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ii~ 85 (192)
|||+.++|++.+..... . ..+...+ +...|+......+..++.++.+|||||+++|..........+|++++
T Consensus 25 KStL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rG~Ti~~~~~~~~~~~~~~~liDtpGh~~f~~~~~~~~~~~D~~il 104 (394)
T TIGR00485 25 KTTLTAAITTVLAKEGGAAARAYDQIDNAPEEKARGITINTAHVEYETENRHYAHVDCPGHADYVKNMITGAAQMDGAIL 104 (394)
T ss_pred HHHHHHHHHhhHHHhhcccccccccccCCHHHHhcCcceeeEEEEEcCCCEEEEEEECCchHHHHHHHHHHHhhCCEEEE
Confidence 78888888755332100 0 0011111 12445555555565567789999999999987766666778999999
Q ss_pred EEeCCCcccHHHHHHHHHHHHhCCCCCCCcEE-EEEeCCCCCCCCC-H----HHHHhHcCccccCCcceEEEEeeecCCC
Q 029517 86 VIDAACPSRFEDSKTALEKVLRNEDLQGAPLL-ILANKQDLPDAVS-A----DELARYLDLKKLDERVCMFEAVSGYDGF 159 (192)
Q Consensus 86 v~D~~~~~s~~~~~~~~~~i~~~~~~~~~pii-iv~nK~Dl~~~~~-~----~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 159 (192)
|+|+......+. .+.+..+... ++|.+ +++||+|+.+... . +++.+++.........++++++||.+|.
T Consensus 105 Vvda~~g~~~qt-~e~l~~~~~~----gi~~iIvvvNK~Dl~~~~~~~~~~~~~i~~~l~~~~~~~~~~~ii~vSa~~g~ 179 (394)
T TIGR00485 105 VVSATDGPMPQT-REHILLARQV----GVPYIVVFLNKCDMVDDEELLELVEMEVRELLSEYDFPGDDTPIIRGSALKAL 179 (394)
T ss_pred EEECCCCCcHHH-HHHHHHHHHc----CCCEEEEEEEecccCCHHHHHHHHHHHHHHHHHhcCCCccCccEEECcccccc
Confidence 999986432222 2333333322 56654 6899999864211 1 2344444321111223789999999875
No 231
>KOG0090 consensus Signal recognition particle receptor, beta subunit (small G protein superfamily) [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.40 E-value=4e-12 Score=92.70 Aligned_cols=130 Identities=28% Similarity=0.434 Sum_probs=97.7
Q ss_pred CCCcceEEEEEEecCEEEEEEeCCCCcccHHHHHHhhh---cCCEEEEEEeCC-CcccHHHHHHHHHHHHhCC--CCCCC
Q 029517 41 VPTVGLNIGRIEVSNSKLVFWDLGGQPGLRSIWEKYYE---EAHAVVFVIDAA-CPSRFEDSKTALEKVLRNE--DLQGA 114 (192)
Q Consensus 41 ~~T~g~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~---~~d~ii~v~D~~-~~~s~~~~~~~~~~i~~~~--~~~~~ 114 (192)
.+++..+...+..+.-...++|.|||++.+.....++. .+-++|||+|+. .......+.+++..++... ....+
T Consensus 67 vtSiepn~a~~r~gs~~~~LVD~PGH~rlR~kl~e~~~~~~~akaiVFVVDSa~f~k~vrdvaefLydil~~~~~~~~~~ 146 (238)
T KOG0090|consen 67 VTSIEPNEATYRLGSENVTLVDLPGHSRLRRKLLEYLKHNYSAKAIVFVVDSATFLKNVRDVAEFLYDILLDSRVKKNKP 146 (238)
T ss_pred eeeeccceeeEeecCcceEEEeCCCcHHHHHHHHHHccccccceeEEEEEeccccchhhHHHHHHHHHHHHhhccccCCC
Confidence 45555556666666656899999999999888888887 799999999985 3445677778888887654 23578
Q ss_pred cEEEEEeCCCCCCCCCHHHHHhHcCcc-----------------------------------ccCCcceEEEEeeecCCC
Q 029517 115 PLLILANKQDLPDAVSADELARYLDLK-----------------------------------KLDERVCMFEAVSGYDGF 159 (192)
Q Consensus 115 piiiv~nK~Dl~~~~~~~~~~~~~~~~-----------------------------------~~~~~~~~~~~~Sa~~~~ 159 (192)
|+++++||.|+..+.+.+.+++.++.+ .+......|.++|++++
T Consensus 147 ~vLIaCNKqDl~tAkt~~~Ir~~LEkEi~~lr~sRsa~~~~~~ed~~~~~tlg~~g~dF~fs~l~~~~V~F~e~S~~~~- 225 (238)
T KOG0090|consen 147 PVLIACNKQDLFTAKTAEKIRQQLEKEIHKLRESRSALRSISDEDIAKDFTLGKEGEDFKFSHLEDQKVTFAEASAKTG- 225 (238)
T ss_pred CEEEEecchhhhhcCcHHHHHHHHHHHHHHHHHHHhhhhccccccccccccccccccccchhhcccceeEEeecccCcC-
Confidence 999999999997766666655555410 12234678999999998
Q ss_pred CHHHHHHHHHHH
Q 029517 160 GIKESVEWLVEV 171 (192)
Q Consensus 160 gi~e~~~~i~~~ 171 (192)
++++.-+|+.+.
T Consensus 226 ~i~~~~~wi~~~ 237 (238)
T KOG0090|consen 226 EIDQWESWIREA 237 (238)
T ss_pred ChHHHHHHHHHh
Confidence 899999998764
No 232
>PRK14845 translation initiation factor IF-2; Provisional
Probab=99.40 E-value=9.4e-12 Score=110.59 Aligned_cols=108 Identities=25% Similarity=0.247 Sum_probs=74.0
Q ss_pred EEEEeCCCCcccHHHHHHhhhcCCEEEEEEeCCCc---ccHHHHHHHHHHHHhCCCCCCCcEEEEEeCCCCCC-CC--C-
Q 029517 58 LVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACP---SRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPD-AV--S- 130 (192)
Q Consensus 58 ~~i~D~~G~~~~~~~~~~~~~~~d~ii~v~D~~~~---~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~-~~--~- 130 (192)
+.|||||||+.|..+....+..+|++++|+|+++. .+++.+. .+ .. .++|+++++||+|+.. .. .
T Consensus 528 i~fiDTPGhe~F~~lr~~g~~~aDivlLVVDa~~Gi~~qT~e~I~----~l-k~---~~iPiIVViNKiDL~~~~~~~~~ 599 (1049)
T PRK14845 528 LLFIDTPGHEAFTSLRKRGGSLADLAVLVVDINEGFKPQTIEAIN----IL-RQ---YKTPFVVAANKIDLIPGWNISED 599 (1049)
T ss_pred EEEEECCCcHHHHHHHHhhcccCCEEEEEEECcccCCHhHHHHHH----HH-HH---cCCCEEEEEECCCCccccccccc
Confidence 89999999999988888788889999999999863 3333322 22 22 3689999999999853 11 0
Q ss_pred --------------HHHHHh----H---cCcccc----------CCcceEEEEeeecCCCCHHHHHHHHHHHHH
Q 029517 131 --------------ADELAR----Y---LDLKKL----------DERVCMFEAVSGYDGFGIKESVEWLVEVME 173 (192)
Q Consensus 131 --------------~~~~~~----~---~~~~~~----------~~~~~~~~~~Sa~~~~gi~e~~~~i~~~i~ 173 (192)
..++.. . +...++ .....+++++||++|.||+++..+|.....
T Consensus 600 ~~~~~~~~~q~~~~~~el~~~l~~v~~~L~~~G~~~e~~~~~~d~~~~v~iVpVSA~tGeGId~Ll~~l~~l~~ 673 (1049)
T PRK14845 600 EPFLLNFNEQDQHALTELEIKLYELIGKLYELGFDADRFDRVQDFTRTVAIVPVSAKTGEGIPELLMMVAGLAQ 673 (1049)
T ss_pred hhhhhhhhhhHHHHHHHHHHHHHHHhhHHHhcCcchhhhhhhhhcCCCceEEEEEcCCCCCHHHHHHHHHHhhH
Confidence 011110 0 110000 023678999999999999999998865433
No 233
>cd04170 EF-G_bact Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group
Probab=99.40 E-value=1.8e-11 Score=94.93 Aligned_cols=108 Identities=19% Similarity=0.192 Sum_probs=74.2
Q ss_pred ccccHHHHHHHHhhhh--ccC-CCCCCC-------CCCCCcceEEEEEEecCEEEEEEeCCCCcccHHHHHHhhhcCCEE
Q 029517 14 TKTEFHTLLEKLKSVY--SNV-EGLPPD-------RIVPTVGLNIGRIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAV 83 (192)
Q Consensus 14 kst~~~~l~~~~~~~~--~~~-~~~~~~-------~~~~T~g~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~i 83 (192)
|||++|+|+...-.+. ..+ .+.+.. ...+|+......+...+.++.+|||||+.++...+..+++.+|++
T Consensus 12 KStL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~r~~ti~~~~~~~~~~~~~i~liDtPG~~~f~~~~~~~l~~aD~~ 91 (268)
T cd04170 12 KTTLAEALLYATGAIDRLGSVEDGTTVSDYDPEEIKRKMSISTSVAPLEWKGHKINLIDTPGYADFVGETRAALRAADAA 91 (268)
T ss_pred HHHHHHHHHHhcCCCccCCeecCCcccCCCCHHHHhhcccccceeEEEEECCEEEEEEECcCHHHHHHHHHHHHHHCCEE
Confidence 8999999886532211 011 111111 124455555667777889999999999998888888899999999
Q ss_pred EEEEeCCCcccHHHHHHHHHHHHhCCCCCCCcEEEEEeCCCCC
Q 029517 84 VFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLP 126 (192)
Q Consensus 84 i~v~D~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~ 126 (192)
++|+|+++.........| ..+. . .++|.++++||+|+.
T Consensus 92 i~Vvd~~~g~~~~~~~~~-~~~~-~---~~~p~iivvNK~D~~ 129 (268)
T cd04170 92 LVVVSAQSGVEVGTEKLW-EFAD-E---AGIPRIIFINKMDRE 129 (268)
T ss_pred EEEEeCCCCCCHHHHHHH-HHHH-H---cCCCEEEEEECCccC
Confidence 999999876555432222 2222 2 368999999999974
No 234
>cd01885 EF2 EF2 (for archaea and eukarya). Translocation requires hydrolysis of a molecule of GTP and is mediated by EF-G in bacteria and by eEF2 in eukaryotes. The eukaryotic elongation factor eEF2 is a GTPase involved in the translocation of the peptidyl-tRNA from the A site to the P site on the ribosome. The 95-kDa protein is highly conserved, with 60% amino acid sequence identity between the human and yeast proteins. Two major mechanisms are known to regulate protein elongation and both involve eEF2. First, eEF2 can be modulated by reversible phosphorylation. Increased levels of phosphorylated eEF2 reduce elongation rates presumably because phosphorylated eEF2 fails to bind the ribosomes. Treatment of mammalian cells with agents that raise the cytoplasmic Ca2+ and cAMP levels reduce elongation rates by activating the kinase responsible for phosphorylating eEF2. In contrast, treatment of cells with insulin increases elongation rates by promoting eEF2 dephosphorylation. Seco
Probab=99.39 E-value=7.7e-12 Score=94.20 Aligned_cols=67 Identities=18% Similarity=0.175 Sum_probs=54.3
Q ss_pred CEEEEEEeCCCCcccHHHHHHhhhcCCEEEEEEeCCCcccHHHHHHHHHHHHhCCCCCCCcEEEEEeCCCCC
Q 029517 55 NSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLP 126 (192)
Q Consensus 55 ~~~~~i~D~~G~~~~~~~~~~~~~~~d~ii~v~D~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~ 126 (192)
++.+.+|||||+.+|......+++.+|++++|+|++.....+. ...+..... .++|+++++||+|+.
T Consensus 72 ~~~i~iiDTPG~~~f~~~~~~~l~~aD~~ilVvD~~~g~~~~t-~~~l~~~~~----~~~p~ilviNKiD~~ 138 (222)
T cd01885 72 EYLINLIDSPGHVDFSSEVTAALRLCDGALVVVDAVEGVCVQT-ETVLRQALK----ERVKPVLVINKIDRL 138 (222)
T ss_pred ceEEEEECCCCccccHHHHHHHHHhcCeeEEEEECCCCCCHHH-HHHHHHHHH----cCCCEEEEEECCCcc
Confidence 7889999999999999999999999999999999998765554 222333322 357999999999986
No 235
>TIGR00157 ribosome small subunit-dependent GTPase A. The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).
Probab=99.39 E-value=1.2e-12 Score=100.02 Aligned_cols=95 Identities=20% Similarity=0.136 Sum_probs=74.0
Q ss_pred cccHHHHHHhhhcCCEEEEEEeCCCcc-cHHHHHHHHHHHHhCCCCCCCcEEEEEeCCCCCCCCCH-HHHHhHcCccccC
Q 029517 67 PGLRSIWEKYYEEAHAVVFVIDAACPS-RFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAVSA-DELARYLDLKKLD 144 (192)
Q Consensus 67 ~~~~~~~~~~~~~~d~ii~v~D~~~~~-s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~~~~~-~~~~~~~~~~~~~ 144 (192)
+++..+...+++++|++++|+|++++. +++.+..|+..+.. .++|+++|+||+||.+.... ++..+.+.
T Consensus 24 eR~~~L~r~~~~n~D~viiV~d~~~p~~s~~~l~r~l~~~~~----~~i~~vIV~NK~DL~~~~~~~~~~~~~~~----- 94 (245)
T TIGR00157 24 ERKNELTRPIVANIDQIVIVSSAVLPELSLNQLDRFLVVAEA----QNIEPIIVLNKIDLLDDEDMEKEQLDIYR----- 94 (245)
T ss_pred cccceEECcccccCCEEEEEEECCCCCCCHHHHHHHHHHHHH----CCCCEEEEEECcccCCCHHHHHHHHHHHH-----
Confidence 566667777999999999999999877 89999999876543 47999999999999642211 12222332
Q ss_pred CcceEEEEeeecCCCCHHHHHHHHHH
Q 029517 145 ERVCMFEAVSGYDGFGIKESVEWLVE 170 (192)
Q Consensus 145 ~~~~~~~~~Sa~~~~gi~e~~~~i~~ 170 (192)
..+++++++||++|.|++++|+.+.+
T Consensus 95 ~~g~~v~~~SAktg~gi~eLf~~l~~ 120 (245)
T TIGR00157 95 NIGYQVLMTSSKNQDGLKELIEALQN 120 (245)
T ss_pred HCCCeEEEEecCCchhHHHHHhhhcC
Confidence 34689999999999999999998764
No 236
>CHL00071 tufA elongation factor Tu
Probab=99.38 E-value=8.8e-12 Score=102.12 Aligned_cols=143 Identities=15% Similarity=0.075 Sum_probs=86.5
Q ss_pred ccccHHHHHHHHhhhhccC------CCCCCCC--CCCCcceEEEEEEecCEEEEEEeCCCCcccHHHHHHhhhcCCEEEE
Q 029517 14 TKTEFHTLLEKLKSVYSNV------EGLPPDR--IVPTVGLNIGRIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVF 85 (192)
Q Consensus 14 kst~~~~l~~~~~~~~~~~------~~~~~~~--~~~T~g~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ii~ 85 (192)
|||+.++|++....+.... .+....+ ...|+......+..++.++.+.||||+.+|.......+..+|++++
T Consensus 25 KSTL~~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~~~~~~~~iDtPGh~~~~~~~~~~~~~~D~~il 104 (409)
T CHL00071 25 KTTLTAAITMTLAAKGGAKAKKYDEIDSAPEEKARGITINTAHVEYETENRHYAHVDCPGHADYVKNMITGAAQMDGAIL 104 (409)
T ss_pred HHHHHHHHHHHhCccccccccccccccCChhhhcCCEeEEccEEEEccCCeEEEEEECCChHHHHHHHHHHHHhCCEEEE
Confidence 8999999987644321110 0111111 1223333333455567789999999999887777777889999999
Q ss_pred EEeCCCcccHHHHHHHHHHHHhCCCCCCCc-EEEEEeCCCCCCCCC-H----HHHHhHcCccccCCcceEEEEeeecCCC
Q 029517 86 VIDAACPSRFEDSKTALEKVLRNEDLQGAP-LLILANKQDLPDAVS-A----DELARYLDLKKLDERVCMFEAVSGYDGF 159 (192)
Q Consensus 86 v~D~~~~~s~~~~~~~~~~i~~~~~~~~~p-iiiv~nK~Dl~~~~~-~----~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 159 (192)
|+|+..... ....+.+..+.. .++| +++++||+|+.+... . +++.+++..........+++++||.+|.
T Consensus 105 Vvda~~g~~-~qt~~~~~~~~~----~g~~~iIvvvNK~D~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~ii~~Sa~~g~ 179 (409)
T CHL00071 105 VVSAADGPM-PQTKEHILLAKQ----VGVPNIVVFLNKEDQVDDEELLELVELEVRELLSKYDFPGDDIPIVSGSALLAL 179 (409)
T ss_pred EEECCCCCc-HHHHHHHHHHHH----cCCCEEEEEEEccCCCCHHHHHHHHHHHHHHHHHHhCCCCCcceEEEcchhhcc
Confidence 999986532 222233333322 3577 778999999975211 1 2333333311112224789999999987
Q ss_pred CH
Q 029517 160 GI 161 (192)
Q Consensus 160 gi 161 (192)
|+
T Consensus 180 n~ 181 (409)
T CHL00071 180 EA 181 (409)
T ss_pred cc
Confidence 43
No 237
>PRK12735 elongation factor Tu; Reviewed
Probab=99.38 E-value=6.6e-12 Score=102.44 Aligned_cols=155 Identities=14% Similarity=0.094 Sum_probs=92.4
Q ss_pred ccccHHHHHHHHhhhhc-c-----CCCCCCC--CCCCCcceEEEEEEecCEEEEEEeCCCCcccHHHHHHhhhcCCEEEE
Q 029517 14 TKTEFHTLLEKLKSVYS-N-----VEGLPPD--RIVPTVGLNIGRIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVF 85 (192)
Q Consensus 14 kst~~~~l~~~~~~~~~-~-----~~~~~~~--~~~~T~g~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ii~ 85 (192)
|||+.++|++....... + ..+...+ ....|+......+..++.++.++||||+++|......-+..+|++++
T Consensus 25 KSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rGiT~~~~~~~~~~~~~~i~~iDtPGh~~f~~~~~~~~~~aD~~ll 104 (396)
T PRK12735 25 KTTLTAAITKVLAKKGGGEAKAYDQIDNAPEEKARGITINTSHVEYETANRHYAHVDCPGHADYVKNMITGAAQMDGAIL 104 (396)
T ss_pred HHHHHHHHHHhhhhcCCcccchhhhccCChhHHhcCceEEEeeeEEcCCCcEEEEEECCCHHHHHHHHHhhhccCCEEEE
Confidence 89999999874321100 0 0011111 22334444444555567789999999999887766677788999999
Q ss_pred EEeCCCcccHHHHHHHHHHHHhCCCCCCCcEE-EEEeCCCCCCCCC-HH----HHHhHcCccccCCcceEEEEeeecCCC
Q 029517 86 VIDAACPSRFEDSKTALEKVLRNEDLQGAPLL-ILANKQDLPDAVS-AD----ELARYLDLKKLDERVCMFEAVSGYDGF 159 (192)
Q Consensus 86 v~D~~~~~s~~~~~~~~~~i~~~~~~~~~pii-iv~nK~Dl~~~~~-~~----~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 159 (192)
|+|+.+...-+ ..+.+..+.. .++|.+ +++||+|+.+... .+ ++..++.........++++++||++|.
T Consensus 105 Vvda~~g~~~q-t~e~l~~~~~----~gi~~iivvvNK~Dl~~~~~~~~~~~~ei~~~l~~~~~~~~~~~ii~~Sa~~g~ 179 (396)
T PRK12735 105 VVSAADGPMPQ-TREHILLARQ----VGVPYIVVFLNKCDMVDDEELLELVEMEVRELLSKYDFPGDDTPIIRGSALKAL 179 (396)
T ss_pred EEECCCCCchh-HHHHHHHHHH----cCCCeEEEEEEecCCcchHHHHHHHHHHHHHHHHHcCCCcCceeEEecchhccc
Confidence 99998643222 2233333322 357755 5799999964211 11 333333211111124789999999984
Q ss_pred ----------CHHHHHHHHHHHHH
Q 029517 160 ----------GIKESVEWLVEVME 173 (192)
Q Consensus 160 ----------gi~e~~~~i~~~i~ 173 (192)
++.++++.|...+.
T Consensus 180 n~~~~~~w~~~~~~Ll~~l~~~~~ 203 (396)
T PRK12735 180 EGDDDEEWEAKILELMDAVDSYIP 203 (396)
T ss_pred cCCCCCcccccHHHHHHHHHhcCC
Confidence 67777777766543
No 238
>cd01899 Ygr210 Ygr210 subfamily. Ygr210 is a member of Obg-like family and present in archaea and fungi. They are characterized by a distinct glycine-rich motif immediately following the Walker B motif. The Ygr210 and YyaF/YchF subfamilies appear to form one major branch of the Obg-like family. Among eukaryotes, the Ygr210 subfamily is represented only in fungi. These fungal proteins form a tight cluster with their archaeal orthologs, which suggests the possibility of horizontal transfer from archaea to fungi.
Probab=99.38 E-value=4.7e-12 Score=100.02 Aligned_cols=153 Identities=21% Similarity=0.263 Sum_probs=97.9
Q ss_pred hccccHHHHHHHHhhhhccCCCCCCCCCCCCcceEEEEE-------------------Ee-cCEEEEEEeCCCC----cc
Q 029517 13 FTKTEFHTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRI-------------------EV-SNSKLVFWDLGGQ----PG 68 (192)
Q Consensus 13 ~kst~~~~l~~~~~~~~~~~~~~~~~~~~~T~g~~~~~~-------------------~~-~~~~~~i~D~~G~----~~ 68 (192)
=|||+||+|.+. ...+++++++++.|++|..+... ++ ..+.+++||+||. +.
T Consensus 10 GKStLfn~lt~~----~~~~~~~pftT~~p~~g~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~v~i~l~D~aGlv~ga~~ 85 (318)
T cd01899 10 GKSTFFNAATLA----DVEIANYPFTTIDPNVGVGYVRVECPCKELGVSCNPRYGKCIDGKRYVPVELIDVAGLVPGAHE 85 (318)
T ss_pred CHHHHHHHHhCC----CCcccCCCCccccceeEEEEEecCCCchhhhhhhcccccccccCcCcceEEEEECCCCCCCccc
Confidence 378888888753 34667888888999999876421 11 2468999999997 34
Q ss_pred cHHHHHH---hhhcCCEEEEEEeCCCc-------------c---cHHHHHHHHHH-------------------------
Q 029517 69 LRSIWEK---YYEEAHAVVFVIDAACP-------------S---RFEDSKTALEK------------------------- 104 (192)
Q Consensus 69 ~~~~~~~---~~~~~d~ii~v~D~~~~-------------~---s~~~~~~~~~~------------------------- 104 (192)
+..+... ++++||++++|+|++.. + .++.+...+..
T Consensus 86 ~~glg~~fL~~ir~aD~ii~Vvd~~~~~d~~~~~~~~~~~dp~~d~~~i~~El~~~d~~~~~~~~~~~~~~~~~~~~~~~ 165 (318)
T cd01899 86 GKGLGNKFLDDLRDADALIHVVDASGGTDAEGNGVETGGHDPLEDIEFLENEIDMWIYGILEKNWEKIVRKADAEKTDIV 165 (318)
T ss_pred hhhHHHHHHHHHHHCCEEEEEEeCCCCcccccccccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccHH
Confidence 4443333 58999999999999731 1 12111111111
Q ss_pred -------------------HHhC-C--------------------CCCCCcEEEEEeCCCCCCCCCHHHHHhHcCccccC
Q 029517 105 -------------------VLRN-E--------------------DLQGAPLLILANKQDLPDAVSADELARYLDLKKLD 144 (192)
Q Consensus 105 -------------------i~~~-~--------------------~~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~ 144 (192)
+++. . ....+|+++++||+|+... ++..+.+.. .
T Consensus 166 ~~~~~~~~~~~~~~~~v~~~L~~~~~~~~~~~~~~~~~~~~~~~~llt~KPvI~VlNK~Dl~~~---~~~~~~l~~---~ 239 (318)
T cd01899 166 EALSEQLSGFGVNEKDVIEALEELELPEDLSKWTDEDLLRLARALRKRSKPMVIAANKADIPDA---ENNISKLRL---K 239 (318)
T ss_pred HHHHHHHhhccccHHHHHHHHHhCCCCCcccCCCHHHHHHHHHHHHhcCCcEEEEEEHHHccCh---HHHHHHHHh---h
Confidence 0000 0 0235799999999997532 222222211 1
Q ss_pred CcceEEEEeeecCCCCHHHHHH-HHHHHHHhc
Q 029517 145 ERVCMFEAVSGYDGFGIKESVE-WLVEVMERS 175 (192)
Q Consensus 145 ~~~~~~~~~Sa~~~~gi~e~~~-~i~~~i~~~ 175 (192)
.....++.+||+.+.|+.++.+ .+.+.+...
T Consensus 240 ~~~~~iI~iSA~~e~~L~~L~~~~i~~~lPe~ 271 (318)
T cd01899 240 YPDEIVVPTSAEAELALRRAAKQGLIKYDPGD 271 (318)
T ss_pred CCCCeEEEEeCcccccHHHHHHhhHHHhCCCC
Confidence 2356799999999999999998 688877654
No 239
>cd01886 EF-G Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta
Probab=99.37 E-value=2.9e-11 Score=93.71 Aligned_cols=121 Identities=16% Similarity=0.113 Sum_probs=79.8
Q ss_pred ccccHHHHHHHHhhh--hccCC------CCCC--CCCCCCcceEEEEEEecCEEEEEEeCCCCcccHHHHHHhhhcCCEE
Q 029517 14 TKTEFHTLLEKLKSV--YSNVE------GLPP--DRIVPTVGLNIGRIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAV 83 (192)
Q Consensus 14 kst~~~~l~~~~~~~--~~~~~------~~~~--~~~~~T~g~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~i 83 (192)
|||++++|+...-.+ ...+. +... .....|+......+..++.++.+|||||+.++...+..+++.+|++
T Consensus 12 KTtL~~~Ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~i~liDTPG~~df~~~~~~~l~~aD~a 91 (270)
T cd01886 12 KTTTTERILYYTGRIHKIGEVHGGGATMDFMEQERERGITIQSAATTCFWKDHRINIIDTPGHVDFTIEVERSLRVLDGA 91 (270)
T ss_pred HHHHHHHHHHHcCCCcccccccCCccccCCCccccCCCcCeeccEEEEEECCEEEEEEECCCcHHHHHHHHHHHHHcCEE
Confidence 899999998643211 01111 1111 1223455555667778899999999999999988899999999999
Q ss_pred EEEEeCCCcccHHHHHHHHHHHHhCCCCCCCcEEEEEeCCCCCCCC---CHHHHHhHcC
Q 029517 84 VFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAV---SADELARYLD 139 (192)
Q Consensus 84 i~v~D~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~~~---~~~~~~~~~~ 139 (192)
|+|+|+.+...-.. ...+..+.. .++|+++++||+|+.+.. ..+++.+.+.
T Consensus 92 ilVVDa~~g~~~~t-~~~~~~~~~----~~~p~ivviNK~D~~~a~~~~~~~~l~~~l~ 145 (270)
T cd01886 92 VAVFDAVAGVEPQT-ETVWRQADR----YNVPRIAFVNKMDRTGADFFRVVEQIREKLG 145 (270)
T ss_pred EEEEECCCCCCHHH-HHHHHHHHH----cCCCEEEEEECCCCCCCCHHHHHHHHHHHhC
Confidence 99999987543222 233333322 368999999999987532 2345555554
No 240
>PRK12740 elongation factor G; Reviewed
Probab=99.37 E-value=1.3e-11 Score=106.91 Aligned_cols=109 Identities=17% Similarity=0.125 Sum_probs=78.5
Q ss_pred ccccHHHHHHHHhhhhc--cCCC--CCCC------CCCCCcceEEEEEEecCEEEEEEeCCCCcccHHHHHHhhhcCCEE
Q 029517 14 TKTEFHTLLEKLKSVYS--NVEG--LPPD------RIVPTVGLNIGRIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAV 83 (192)
Q Consensus 14 kst~~~~l~~~~~~~~~--~~~~--~~~~------~~~~T~g~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~i 83 (192)
|||++++|+...-.+.. ++.+ ...+ ....|++.....+...++.+.+|||||+.++...+..+++.+|++
T Consensus 8 KTTL~~~Ll~~~g~i~~~~~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~i~liDtPG~~~~~~~~~~~l~~aD~v 87 (668)
T PRK12740 8 KTTLTEAILFYTGAIHRIGEVEDGTTTMDFMPEERERGISITSAATTCEWKGHKINLIDTPGHVDFTGEVERALRVLDGA 87 (668)
T ss_pred HHHHHHHHHHhcCCCccCccccCCcccCCCChHHHhcCCCeeeceEEEEECCEEEEEEECCCcHHHHHHHHHHHHHhCeE
Confidence 89999999876332211 1111 1111 235677777778888899999999999998888888899999999
Q ss_pred EEEEeCCCcccHHHHHHHHHHHHhCCCCCCCcEEEEEeCCCCCC
Q 029517 84 VFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPD 127 (192)
Q Consensus 84 i~v~D~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~ 127 (192)
++|+|++..........| ..+.. .++|+++++||+|+..
T Consensus 88 llvvd~~~~~~~~~~~~~-~~~~~----~~~p~iiv~NK~D~~~ 126 (668)
T PRK12740 88 VVVVCAVGGVEPQTETVW-RQAEK----YGVPRIIFVNKMDRAG 126 (668)
T ss_pred EEEEeCCCCcCHHHHHHH-HHHHH----cCCCEEEEEECCCCCC
Confidence 999999887655543332 22222 3689999999999864
No 241
>PLN03126 Elongation factor Tu; Provisional
Probab=99.37 E-value=1.4e-11 Score=102.27 Aligned_cols=142 Identities=16% Similarity=0.107 Sum_probs=88.1
Q ss_pred ccccHHHHHHHHhhhhccCCCC------CCCC--CCCCcceEEEEEEecCEEEEEEeCCCCcccHHHHHHhhhcCCEEEE
Q 029517 14 TKTEFHTLLEKLKSVYSNVEGL------PPDR--IVPTVGLNIGRIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVF 85 (192)
Q Consensus 14 kst~~~~l~~~~~~~~~~~~~~------~~~~--~~~T~g~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ii~ 85 (192)
|||+.++|++....+....... ..++ ...|+......+..++.++.++|+||+++|.......+..+|++++
T Consensus 94 KSTLi~~Ll~~~~~i~~~~~~~~~~~D~~~~Er~rGiTi~~~~~~~~~~~~~i~liDtPGh~~f~~~~~~g~~~aD~ail 173 (478)
T PLN03126 94 KTTLTAALTMALASMGGSAPKKYDEIDAAPEERARGITINTATVEYETENRHYAHVDCPGHADYVKNMITGAAQMDGAIL 173 (478)
T ss_pred HHHHHHHHHHhhhhhccccccccccccCChhHHhCCeeEEEEEEEEecCCcEEEEEECCCHHHHHHHHHHHHhhCCEEEE
Confidence 7888888887554432222111 1111 1234444444566677899999999999998877777889999999
Q ss_pred EEeCCCcccHHHHHHHHHHHHhCCCCCCCc-EEEEEeCCCCCCCCC-HH----HHHhHcCccccCCcceEEEEeeecCCC
Q 029517 86 VIDAACPSRFEDSKTALEKVLRNEDLQGAP-LLILANKQDLPDAVS-AD----ELARYLDLKKLDERVCMFEAVSGYDGF 159 (192)
Q Consensus 86 v~D~~~~~s~~~~~~~~~~i~~~~~~~~~p-iiiv~nK~Dl~~~~~-~~----~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 159 (192)
|+|+.+...-+. .+.+..+.. .++| +++++||+|+..... .+ ++.+++....+.....+++++||.+|.
T Consensus 174 VVda~~G~~~qt-~e~~~~~~~----~gi~~iIvvvNK~Dl~~~~~~~~~i~~~i~~~l~~~g~~~~~~~~vp~Sa~~g~ 248 (478)
T PLN03126 174 VVSGADGPMPQT-KEHILLAKQ----VGVPNMVVFLNKQDQVDDEELLELVELEVRELLSSYEFPGDDIPIISGSALLAL 248 (478)
T ss_pred EEECCCCCcHHH-HHHHHHHHH----cCCCeEEEEEecccccCHHHHHHHHHHHHHHHHHhcCCCcCcceEEEEEccccc
Confidence 999986543322 333333332 3577 788999999864111 12 333333311122346889999999885
Q ss_pred C
Q 029517 160 G 160 (192)
Q Consensus 160 g 160 (192)
+
T Consensus 249 n 249 (478)
T PLN03126 249 E 249 (478)
T ss_pred c
Confidence 4
No 242
>cd01876 YihA_EngB The YihA (EngB) subfamily. This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.
Probab=99.37 E-value=7.2e-12 Score=89.56 Aligned_cols=105 Identities=26% Similarity=0.254 Sum_probs=68.0
Q ss_pred EEEEEeCCCCcc----------cHHHHHHhhh---cCCEEEEEEeCCCcccHH--HHHHHHHHHHhCCCCCCCcEEEEEe
Q 029517 57 KLVFWDLGGQPG----------LRSIWEKYYE---EAHAVVFVIDAACPSRFE--DSKTALEKVLRNEDLQGAPLLILAN 121 (192)
Q Consensus 57 ~~~i~D~~G~~~----------~~~~~~~~~~---~~d~ii~v~D~~~~~s~~--~~~~~~~~i~~~~~~~~~piiiv~n 121 (192)
.+.+|||||... +......++. .++++++++|.....+.. .+..|+. . .+.|+++++|
T Consensus 46 ~~~~~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~l~----~---~~~~vi~v~n 118 (170)
T cd01876 46 KFRLVDLPGYGYAKVSKEVKEKWGKLIEEYLENRENLKGVVLLIDSRHGPTEIDLEMLDWLE----E---LGIPFLVVLT 118 (170)
T ss_pred eEEEecCCCccccccCHHHHHHHHHHHHHHHHhChhhhEEEEEEEcCcCCCHhHHHHHHHHH----H---cCCCEEEEEE
Confidence 899999999532 3444455554 357889999987653222 2223322 2 2589999999
Q ss_pred CCCCCCCCCHH----HHHhHcCccccCCcceEEEEeeecCCCCHHHHHHHHHHH
Q 029517 122 KQDLPDAVSAD----ELARYLDLKKLDERVCMFEAVSGYDGFGIKESVEWLVEV 171 (192)
Q Consensus 122 K~Dl~~~~~~~----~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~e~~~~i~~~ 171 (192)
|+|+....... .....++. .....+++++||+++.|+.+++++|.+.
T Consensus 119 K~D~~~~~~~~~~~~~~~~~l~~---~~~~~~~~~~Sa~~~~~~~~l~~~l~~~ 169 (170)
T cd01876 119 KADKLKKSELAKALKEIKKELKL---FEIDPPIILFSSLKGQGIDELRALIEKW 169 (170)
T ss_pred chhcCChHHHHHHHHHHHHHHHh---ccCCCceEEEecCCCCCHHHHHHHHHHh
Confidence 99985421111 12111110 1335688999999999999999999864
No 243
>cd04167 Snu114p Snu114p subfamily. Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs.
Probab=99.37 E-value=4.5e-12 Score=95.08 Aligned_cols=68 Identities=16% Similarity=0.207 Sum_probs=54.0
Q ss_pred cCEEEEEEeCCCCcccHHHHHHhhhcCCEEEEEEeCCCcccHHHHHHHHHHHHhCCCCCCCcEEEEEeCCCCC
Q 029517 54 SNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLP 126 (192)
Q Consensus 54 ~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ii~v~D~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~ 126 (192)
..+.+.+|||||+.+|......++..+|++++|+|++...+... ..++..... .++|+++++||+|+.
T Consensus 69 ~~~~i~iiDtpG~~~f~~~~~~~~~~aD~~llVvD~~~~~~~~~-~~~~~~~~~----~~~p~iiviNK~D~~ 136 (213)
T cd04167 69 KSYLFNIIDTPGHVNFMDEVAAALRLSDGVVLVVDVVEGVTSNT-ERLIRHAIL----EGLPIVLVINKIDRL 136 (213)
T ss_pred CEEEEEEEECCCCcchHHHHHHHHHhCCEEEEEEECCCCCCHHH-HHHHHHHHH----cCCCEEEEEECcccC
Confidence 35789999999999998888889999999999999987765543 233333322 358999999999975
No 244
>KOG4423 consensus GTP-binding protein-like, RAS superfamily [Signal transduction mechanisms]
Probab=99.37 E-value=1.6e-13 Score=97.78 Aligned_cols=135 Identities=22% Similarity=0.302 Sum_probs=107.5
Q ss_pred CCCCCCCCcceEEEE----EEec-CEEEEEEeCCCCcccHHHHHHhhhcCCEEEEEEeCCCcccHHHHHHHHHHHHhCCC
Q 029517 36 PPDRIVPTVGLNIGR----IEVS-NSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNED 110 (192)
Q Consensus 36 ~~~~~~~T~g~~~~~----~~~~-~~~~~i~D~~G~~~~~~~~~~~~~~~d~ii~v~D~~~~~s~~~~~~~~~~i~~~~~ 110 (192)
|...|..|||..+.- .+.. -+++++||+.||++|..+..-|++.+.+..+|+|.+...+|+....|...+.....
T Consensus 50 fs~~yRAtIgvdfalkVl~wdd~t~vRlqLwdIagQerfg~mtrVyykea~~~~iVfdvt~s~tfe~~skwkqdldsk~q 129 (229)
T KOG4423|consen 50 FSYHYRATIGVDFALKVLQWDDKTIVRLQLWDIAGQERFGNMTRVYYKEAHGAFIVFDVTRSLTFEPVSKWKQDLDSKLQ 129 (229)
T ss_pred HHHHHHHHHhHHHHHHHhccChHHHHHHHHhcchhhhhhcceEEEEecCCcceEEEEEccccccccHHHHHHHhccCccc
Confidence 344567788876652 2222 46899999999999999999999999999999999999999999999998876432
Q ss_pred C---CCCcEEEEEeCCCCCC---CCCHHHHHhHcCccccCCcce-EEEEeeecCCCCHHHHHHHHHHHHHhc
Q 029517 111 L---QGAPLLILANKQDLPD---AVSADELARYLDLKKLDERVC-MFEAVSGYDGFGIKESVEWLVEVMERS 175 (192)
Q Consensus 111 ~---~~~piiiv~nK~Dl~~---~~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~gi~e~~~~i~~~i~~~ 175 (192)
+ ...|+++..||+|... ......+.++.+ .+++ .++++|+|.+.|++|+-+.+++.+.-.
T Consensus 130 Lpng~Pv~~vllankCd~e~~a~~~~~~~~d~f~k-----engf~gwtets~Kenkni~Ea~r~lVe~~lvn 196 (229)
T KOG4423|consen 130 LPNGTPVPCVLLANKCDQEKSAKNEATRQFDNFKK-----ENGFEGWTETSAKENKNIPEAQRELVEKILVN 196 (229)
T ss_pred CCCCCcchheeccchhccChHhhhhhHHHHHHHHh-----ccCccceeeeccccccChhHHHHHHHHHHHhh
Confidence 2 3578999999999876 223466777776 4444 599999999999999999999977643
No 245
>TIGR02034 CysN sulfate adenylyltransferase, large subunit. Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules. With members of the Rhizobiaceae family, nodQ often appears as a fusion of cysN (large subunit of ATP sulfurase) and cysC (APS kinase).
Probab=99.37 E-value=8.8e-12 Score=102.00 Aligned_cols=120 Identities=15% Similarity=0.066 Sum_probs=77.4
Q ss_pred CCCcceEEEEEEecCEEEEEEeCCCCcccHHHHHHhhhcCCEEEEEEeCCCcccHHHHHHHHHHHHhCCCCCCCcEEEEE
Q 029517 41 VPTVGLNIGRIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILA 120 (192)
Q Consensus 41 ~~T~g~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ii~v~D~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~ 120 (192)
..|+...+..+..++.++.++||||+++|.......+..+|++++|+|+.....-+.. +.+..+... ...++++++
T Consensus 65 giTid~~~~~~~~~~~~~~liDtPGh~~f~~~~~~~~~~aD~allVVda~~G~~~qt~-~~~~~~~~~---~~~~iivvi 140 (406)
T TIGR02034 65 GITIDVAYRYFSTDKRKFIVADTPGHEQYTRNMATGASTADLAVLLVDARKGVLEQTR-RHSYIASLL---GIRHVVLAV 140 (406)
T ss_pred CcCeEeeeEEEccCCeEEEEEeCCCHHHHHHHHHHHHhhCCEEEEEEECCCCCccccH-HHHHHHHHc---CCCcEEEEE
Confidence 4466666667777788999999999999977766778899999999999765322211 111111122 234689999
Q ss_pred eCCCCCCCCC--HHHHHhHcC--ccccCCcceEEEEeeecCCCCHHHH
Q 029517 121 NKQDLPDAVS--ADELARYLD--LKKLDERVCMFEAVSGYDGFGIKES 164 (192)
Q Consensus 121 nK~Dl~~~~~--~~~~~~~~~--~~~~~~~~~~~~~~Sa~~~~gi~e~ 164 (192)
||+|+.+... .+++.+.+. +........+++++||++|.|+++.
T Consensus 141 NK~D~~~~~~~~~~~i~~~~~~~~~~~~~~~~~iipiSA~~g~ni~~~ 188 (406)
T TIGR02034 141 NKMDLVDYDEEVFENIKKDYLAFAEQLGFRDVTFIPLSALKGDNVVSR 188 (406)
T ss_pred EecccccchHHHHHHHHHHHHHHHHHcCCCCccEEEeecccCCCCccc
Confidence 9999874211 111222111 0011122467999999999999863
No 246
>TIGR00484 EF-G translation elongation factor EF-G. After peptide bond formation, this elongation factor of bacteria and organelles catalyzes the translocation of the tRNA-mRNA complex, with its attached nascent polypeptide chain, from the A-site to the P-site of the ribosome. Every completed bacterial genome has at least one copy, but some species have additional EF-G-like proteins. The closest homolog to canonical (e.g. E. coli) EF-G in the spirochetes clusters as if it is derived from mitochondrial forms, while a more distant second copy is also present. Synechocystis PCC6803 has a few proteins more closely related to EF-G than to any other characterized protein. Two of these resemble E. coli EF-G more closely than does the best match from the spirochetes; it may be that both function as authentic EF-G.
Probab=99.36 E-value=3.6e-11 Score=104.46 Aligned_cols=110 Identities=16% Similarity=0.098 Sum_probs=75.9
Q ss_pred hccccHHHHHHHHhhh--hccCCC--CCCC------CCCCCcceEEEEEEecCEEEEEEeCCCCcccHHHHHHhhhcCCE
Q 029517 13 FTKTEFHTLLEKLKSV--YSNVEG--LPPD------RIVPTVGLNIGRIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHA 82 (192)
Q Consensus 13 ~kst~~~~l~~~~~~~--~~~~~~--~~~~------~~~~T~g~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ 82 (192)
=|||++|+|++..-.+ ..++.+ .+.+ ....|+......+..++.++.+|||||+.++...+...++.+|+
T Consensus 22 GKsTL~~~ll~~~g~~~~~~~~~~g~~~~D~~~~e~~rgiti~~~~~~~~~~~~~i~liDTPG~~~~~~~~~~~l~~~D~ 101 (689)
T TIGR00484 22 GKTTTTERILFYTGRIHKIGEVHDGAATMDWMEQEKERGITITSAATTVFWKGHRINIIDTPGHVDFTVEVERSLRVLDG 101 (689)
T ss_pred CHHHHHHHHHHhCCCccccccccCCccccCCCHHHHhcCCCEecceEEEEECCeEEEEEECCCCcchhHHHHHHHHHhCE
Confidence 3899999998643221 111111 1111 22345555566778889999999999999988888899999999
Q ss_pred EEEEEeCCCcccHHHHHHHHHHHHhCCCCCCCcEEEEEeCCCCCC
Q 029517 83 VVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPD 127 (192)
Q Consensus 83 ii~v~D~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~ 127 (192)
+++|+|+++....+.. ..+..+.. .++|+++++||+|+..
T Consensus 102 ~ilVvda~~g~~~~~~-~~~~~~~~----~~~p~ivviNK~D~~~ 141 (689)
T TIGR00484 102 AVAVLDAVGGVQPQSE-TVWRQANR----YEVPRIAFVNKMDKTG 141 (689)
T ss_pred EEEEEeCCCCCChhHH-HHHHHHHH----cCCCEEEEEECCCCCC
Confidence 9999999876554432 22232222 3689999999999864
No 247
>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process
Probab=99.34 E-value=1e-11 Score=86.44 Aligned_cols=98 Identities=22% Similarity=0.279 Sum_probs=70.0
Q ss_pred EEEeCCCCc----ccHHHHHHhhhcCCEEEEEEeCCCccc-HHHHHHHHHHHHhCCCCCCCcEEEEEeCCCCC-CCCCHH
Q 029517 59 VFWDLGGQP----GLRSIWEKYYEEAHAVVFVIDAACPSR-FEDSKTALEKVLRNEDLQGAPLLILANKQDLP-DAVSAD 132 (192)
Q Consensus 59 ~i~D~~G~~----~~~~~~~~~~~~~d~ii~v~D~~~~~s-~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~-~~~~~~ 132 (192)
.++||||.. .|..........||.+++|.|++++.+ |.- - +... ...|+|-|+||+|+. +....+
T Consensus 39 ~~IDTPGEyiE~~~~y~aLi~ta~dad~V~ll~dat~~~~~~pP---~---fa~~---f~~pvIGVITK~Dl~~~~~~i~ 109 (143)
T PF10662_consen 39 NTIDTPGEYIENPRFYHALIVTAQDADVVLLLQDATEPRSVFPP---G---FASM---FNKPVIGVITKIDLPSDDANIE 109 (143)
T ss_pred cEEECChhheeCHHHHHHHHHHHhhCCEEEEEecCCCCCccCCc---h---hhcc---cCCCEEEEEECccCccchhhHH
Confidence 459999943 444555556678999999999997643 221 1 1111 368999999999998 344566
Q ss_pred HHHhHcCccccCCcceEEEEeeecCCCCHHHHHHHHH
Q 029517 133 ELARYLDLKKLDERVCMFEAVSGYDGFGIKESVEWLV 169 (192)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~e~~~~i~ 169 (192)
.+.++++..... ..|++|+.+|+||+++.++|-
T Consensus 110 ~a~~~L~~aG~~----~if~vS~~~~eGi~eL~~~L~ 142 (143)
T PF10662_consen 110 RAKKWLKNAGVK----EIFEVSAVTGEGIEELKDYLE 142 (143)
T ss_pred HHHHHHHHcCCC----CeEEEECCCCcCHHHHHHHHh
Confidence 666777633222 469999999999999999874
No 248
>COG1163 DRG Predicted GTPase [General function prediction only]
Probab=99.33 E-value=3.5e-11 Score=93.08 Aligned_cols=145 Identities=25% Similarity=0.296 Sum_probs=104.1
Q ss_pred ccHHHHHHHHhhhhccCCCCCCCCCCCCcceEEEEEEecCEEEEEEeCCCCc---cc----HHHHHHhhhcCCEEEEEEe
Q 029517 16 TEFHTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQP---GL----RSIWEKYYEEAHAVVFVID 88 (192)
Q Consensus 16 t~~~~l~~~~~~~~~~~~~~~~~~~~~T~g~~~~~~~~~~~~~~i~D~~G~~---~~----~~~~~~~~~~~d~ii~v~D 88 (192)
..-.+|++.++++.++++.+++++..|..|+ +++++..+|++|+||.- .. ........++||++++|+|
T Consensus 74 vGKStLL~~LTnt~seva~y~FTTl~~VPG~----l~Y~ga~IQild~Pgii~gas~g~grG~~vlsv~R~ADlIiiVld 149 (365)
T COG1163 74 VGKSTLLNKLTNTKSEVADYPFTTLEPVPGM----LEYKGAQIQLLDLPGIIEGASSGRGRGRQVLSVARNADLIIIVLD 149 (365)
T ss_pred ccHHHHHHHHhCCCccccccCceecccccce----EeecCceEEEEcCcccccCcccCCCCcceeeeeeccCCEEEEEEe
Confidence 3345778888888899999998888887777 88999999999999831 11 1234556799999999999
Q ss_pred CCCccc-HHHHHHHHH----------------------------------------HHHhC-------------------
Q 029517 89 AACPSR-FEDSKTALE----------------------------------------KVLRN------------------- 108 (192)
Q Consensus 89 ~~~~~s-~~~~~~~~~----------------------------------------~i~~~------------------- 108 (192)
+..... .+.+...+. .++..
T Consensus 150 ~~~~~~~~~~i~~ELe~~GIrlnk~~p~V~I~kk~~gGI~i~~t~~l~~~d~~~ir~iL~Ey~I~nA~V~Ir~dvTlDd~ 229 (365)
T COG1163 150 VFEDPHHRDIIERELEDVGIRLNKRPPDVTIKKKESGGIRINGTGPLTHLDEDTVRAILREYRIHNADVLIREDVTLDDL 229 (365)
T ss_pred cCCChhHHHHHHHHHHhcCeEecCCCCceEEEEeccCCEEEecccccccCCHHHHHHHHHHhCcccceEEEecCCcHHHH
Confidence 985443 332222111 11110
Q ss_pred -----CCCCCCcEEEEEeCCCCCCCCCHHHHHhHcCccccCCcceEEEEeeecCCCCHHHHHHHHHHHHHh
Q 029517 109 -----EDLQGAPLLILANKQDLPDAVSADELARYLDLKKLDERVCMFEAVSGYDGFGIKESVEWLVEVMER 174 (192)
Q Consensus 109 -----~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~e~~~~i~~~i~~ 174 (192)
....-+|.+.|.||+|+.. .+++....+ ....+.+||+++.|++++.+.|++.+.-
T Consensus 230 id~l~~nrvY~p~l~v~NKiD~~~---~e~~~~l~~-------~~~~v~isa~~~~nld~L~e~i~~~L~l 290 (365)
T COG1163 230 IDALEGNRVYKPALYVVNKIDLPG---LEELERLAR-------KPNSVPISAKKGINLDELKERIWDVLGL 290 (365)
T ss_pred HHHHhhcceeeeeEEEEecccccC---HHHHHHHHh-------ccceEEEecccCCCHHHHHHHHHHhhCe
Confidence 0012479999999999875 455555554 2378899999999999999999998754
No 249
>PF04670 Gtr1_RagA: Gtr1/RagA G protein conserved region; InterPro: IPR006762 GTR1 was first identified in Saccharomyces cerevisiae (Baker's yeast) as a suppressor of a mutation in RCC1. RCC1 catalyzes guanine nucleotide exchange on Ran, a well characterised nuclear Ras-like small G protein that plays an essential role in the import and export of proteins and RNAs across the nuclear membrane through the nuclear pore complex. RCC1 is located inside the nucleus, bound to chromatin. The concentration of GTP within the cell is ~30 times higher than the concentration of GDP, thus resulting in the preferential production of the GTP form of Ran by RCC1 within the nucleus. Gtr1p is located within both the cytoplasm and the nucleus and has been reported to play a role in cell growth. Biochemical analysis revealed that Gtr1 is in fact a G protein of the Ras family. The RagA/B proteins are the human homologues of Gtr1 and Rag A and Gtr1p belong to the sixth subfamily of the Ras-like small GTPase superfamily []. ; GO: 0005525 GTP binding, 0005634 nucleus, 0005737 cytoplasm; PDB: 3R7W_B 2Q3F_B 3LLU_A.
Probab=99.32 E-value=5.9e-12 Score=95.02 Aligned_cols=138 Identities=18% Similarity=0.263 Sum_probs=85.9
Q ss_pred CCCCCCCCCCcceEEEEEEe-cCEEEEEEeCCCCcccHH-----HHHHhhhcCCEEEEEEeCCCcc---cHHHHHHHHHH
Q 029517 34 GLPPDRIVPTVGLNIGRIEV-SNSKLVFWDLGGQPGLRS-----IWEKYYEEAHAVVFVIDAACPS---RFEDSKTALEK 104 (192)
Q Consensus 34 ~~~~~~~~~T~g~~~~~~~~-~~~~~~i~D~~G~~~~~~-----~~~~~~~~~d~ii~v~D~~~~~---s~~~~~~~~~~ 104 (192)
+.......||+.++..++.. ..+.+++||+||+..+.. .....+++++++|+|+|+...+ .+..+...+..
T Consensus 25 p~dT~~L~~T~~ve~~~v~~~~~~~l~iwD~pGq~~~~~~~~~~~~~~if~~v~~LIyV~D~qs~~~~~~l~~~~~~i~~ 104 (232)
T PF04670_consen 25 PRDTLRLEPTIDVEKSHVRFLSFLPLNIWDCPGQDDFMENYFNSQREEIFSNVGVLIYVFDAQSDDYDEDLAYLSDCIEA 104 (232)
T ss_dssp GGGGGG-----SEEEEEEECTTSCEEEEEEE-SSCSTTHTTHTCCHHHHHCTESEEEEEEETT-STCHHHHHHHHHHHHH
T ss_pred chhccccCCcCCceEEEEecCCCcEEEEEEcCCccccccccccccHHHHHhccCEEEEEEEcccccHHHHHHHHHHHHHH
Confidence 44455678999999888864 467999999999875433 3677899999999999998443 23344444555
Q ss_pred HHhCCCCCCCcEEEEEeCCCCCCCCCHHHHHhHcC---ccccCCc---ceEEEEeeecCCCCHHHHHHHHHHHHHh
Q 029517 105 VLRNEDLQGAPLLILANKQDLPDAVSADELARYLD---LKKLDER---VCMFEAVSGYDGFGIKESVEWLVEVMER 174 (192)
Q Consensus 105 i~~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~~---~~~~~~~---~~~~~~~Sa~~~~gi~e~~~~i~~~i~~ 174 (192)
+.+.. +++.+.++++|+|+......+++.+... ....... .+.++.||..+ +.+.+++..++..+..
T Consensus 105 l~~~s--p~~~v~vfiHK~D~l~~~~r~~~~~~~~~~i~~~~~~~~~~~~~~~~TSI~D-~Sly~A~S~Ivq~LiP 177 (232)
T PF04670_consen 105 LRQYS--PNIKVFVFIHKMDLLSEDEREEIFRDIQQRIRDELEDLGIEDITFFLTSIWD-ESLYEAWSKIVQKLIP 177 (232)
T ss_dssp HHHHS--TT-EEEEEEE-CCCS-HHHHHHHHHHHHHHHHHHHHHTT-TSEEEEEE-TTS-THHHHHHHHHHHTTST
T ss_pred HHHhC--CCCeEEEEEeecccCCHHHHHHHHHHHHHHHHHHhhhccccceEEEeccCcC-cHHHHHHHHHHHHHcc
Confidence 55544 6899999999999865222222211111 0001122 48999999999 6899999999887654
No 250
>PRK05124 cysN sulfate adenylyltransferase subunit 1; Provisional
Probab=99.32 E-value=1.9e-11 Score=101.74 Aligned_cols=121 Identities=14% Similarity=0.090 Sum_probs=77.3
Q ss_pred CCCcceEEEEEEecCEEEEEEeCCCCcccHHHHHHhhhcCCEEEEEEeCCCcccHHHHHHHHHHHHhCCCCCCCcEEEEE
Q 029517 41 VPTVGLNIGRIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILA 120 (192)
Q Consensus 41 ~~T~g~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ii~v~D~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~ 120 (192)
..|+...+..+..++.++.|+||||+++|......-+..+|++++|+|+.....-.....+ .+.... ...|+++++
T Consensus 92 giTid~~~~~~~~~~~~i~~iDTPGh~~f~~~~~~~l~~aD~allVVDa~~G~~~qt~~~~--~l~~~l--g~~~iIvvv 167 (474)
T PRK05124 92 GITIDVAYRYFSTEKRKFIIADTPGHEQYTRNMATGASTCDLAILLIDARKGVLDQTRRHS--FIATLL--GIKHLVVAV 167 (474)
T ss_pred CCCeEeeEEEeccCCcEEEEEECCCcHHHHHHHHHHHhhCCEEEEEEECCCCccccchHHH--HHHHHh--CCCceEEEE
Confidence 3456666666777788999999999998877666667999999999999754221111111 112211 225799999
Q ss_pred eCCCCCCCCC--HHHHHhHcC--ccccC-CcceEEEEeeecCCCCHHHHH
Q 029517 121 NKQDLPDAVS--ADELARYLD--LKKLD-ERVCMFEAVSGYDGFGIKESV 165 (192)
Q Consensus 121 nK~Dl~~~~~--~~~~~~~~~--~~~~~-~~~~~~~~~Sa~~~~gi~e~~ 165 (192)
||+|+.+... .+++.+.+. +.... ....+++++||++|.|+.++-
T Consensus 168 NKiD~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~iipvSA~~g~ni~~~~ 217 (474)
T PRK05124 168 NKMDLVDYSEEVFERIREDYLTFAEQLPGNLDIRFVPLSALEGDNVVSQS 217 (474)
T ss_pred EeeccccchhHHHHHHHHHHHHHHHhcCCCCCceEEEEEeecCCCccccc
Confidence 9999874211 222222221 00011 225789999999999998753
No 251
>COG0370 FeoB Fe2+ transport system protein B [Inorganic ion transport and metabolism]
Probab=99.32 E-value=4.6e-11 Score=100.47 Aligned_cols=141 Identities=21% Similarity=0.272 Sum_probs=99.8
Q ss_pred hccccHHHHHHHHhhhhccCCCCCCCCCCCCcceEEEEEEecCEEEEEEeCCCCccc------HHHHHHhhh--cCCEEE
Q 029517 13 FTKTEFHTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPGL------RSIWEKYYE--EAHAVV 84 (192)
Q Consensus 13 ~kst~~~~l~~~~~~~~~~~~~~~~~~~~~T~g~~~~~~~~~~~~~~i~D~~G~~~~------~~~~~~~~~--~~d~ii 84 (192)
=|||+||+|.+. ..++.|.+ ..|.+-..+.+..++-.+++.|.||.... ......|+. +.|++|
T Consensus 15 GKTtlFN~LTG~----~q~VgNwp----GvTVEkkeg~~~~~~~~i~ivDLPG~YSL~~~S~DE~Var~~ll~~~~D~iv 86 (653)
T COG0370 15 GKTTLFNALTGA----NQKVGNWP----GVTVEKKEGKLKYKGHEIEIVDLPGTYSLTAYSEDEKVARDFLLEGKPDLIV 86 (653)
T ss_pred cHHHHHHHHhcc----CceecCCC----CeeEEEEEEEEEecCceEEEEeCCCcCCCCCCCchHHHHHHHHhcCCCCEEE
Confidence 367777766544 44444554 34444456667777888999999995432 222333443 579999
Q ss_pred EEEeCCCcccHHHHHHHHHHHHhCCCCCCCcEEEEEeCCCCCC----CCCHHHHHhHcCccccCCcceEEEEeeecCCCC
Q 029517 85 FVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPD----AVSADELARYLDLKKLDERVCMFEAVSGYDGFG 160 (192)
Q Consensus 85 ~v~D~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~----~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~g 160 (192)
.|+|+++ +++.....-++++. ++|++++.|++|..+ .++.+...+.+ +++++++||++|.|
T Consensus 87 nVvDAtn---LeRnLyltlQLlE~----g~p~ilaLNm~D~A~~~Gi~ID~~~L~~~L--------GvPVv~tvA~~g~G 151 (653)
T COG0370 87 NVVDATN---LERNLYLTLQLLEL----GIPMILALNMIDEAKKRGIRIDIEKLSKLL--------GVPVVPTVAKRGEG 151 (653)
T ss_pred EEcccch---HHHHHHHHHHHHHc----CCCeEEEeccHhhHHhcCCcccHHHHHHHh--------CCCEEEEEeecCCC
Confidence 9999998 45555555555555 689999999999866 45666666655 58999999999999
Q ss_pred HHHHHHHHHHHHHhcc
Q 029517 161 IKESVEWLVEVMERSK 176 (192)
Q Consensus 161 i~e~~~~i~~~i~~~~ 176 (192)
++++.+++.+...+..
T Consensus 152 ~~~l~~~i~~~~~~~~ 167 (653)
T COG0370 152 LEELKRAIIELAESKT 167 (653)
T ss_pred HHHHHHHHHHhccccc
Confidence 9999999987554443
No 252
>cd04165 GTPBP1_like GTPBP1-like. Mammalian GTP binding protein 1 (GTPBP1), GTPBP2, and nematode homologs AGP-1 and CGP-1 are GTPases whose specific functions remain unknown. In mouse, GTPBP1 is expressed in macrophages, in smooth muscle cells of various tissues and in some neurons of the cerebral cortex; GTPBP2 tissue distribution appears to overlap that of GTPBP1. In human leukemia and macrophage cell lines, expression of both GTPBP1 and GTPBP2 is enhanced by interferon-gamma (IFN-gamma). The chromosomal location of both genes has been identified in humans, with GTPBP1 located in chromosome 22q12-13.1 and GTPBP2 located in chromosome 6p21-12. Human glioblastoma multiforme (GBM), a highly-malignant astrocytic glioma and the most common cancer in the central nervous system, has been linked to chromosomal deletions and a translocation on chromosome 6. The GBM translocation results in a fusion of GTPBP2 and PTPRZ1, a protein involved in oligodendrocyte differentiation, recovery, and
Probab=99.32 E-value=5.9e-11 Score=89.66 Aligned_cols=114 Identities=23% Similarity=0.215 Sum_probs=75.7
Q ss_pred EecCEEEEEEeCCCCcccHHHHHHhhh--cCCEEEEEEeCCCcccHHHHHHHHHHHHhCCCCCCCcEEEEEeCCCCCCCC
Q 029517 52 EVSNSKLVFWDLGGQPGLRSIWEKYYE--EAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAV 129 (192)
Q Consensus 52 ~~~~~~~~i~D~~G~~~~~~~~~~~~~--~~d~ii~v~D~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~~~ 129 (192)
...+..+.+.||||+++|.......+. .+|++++|+|+.....- ....++..+.. .++|+++++||+|+.+..
T Consensus 80 ~~~~~~i~liDtpG~~~~~~~~~~~~~~~~~D~~llVvda~~g~~~-~d~~~l~~l~~----~~ip~ivvvNK~D~~~~~ 154 (224)
T cd04165 80 EKSSKLVTFIDLAGHERYLKTTLFGLTGYAPDYAMLVVAANAGIIG-MTKEHLGLALA----LNIPVFVVVTKIDLAPAN 154 (224)
T ss_pred eeCCcEEEEEECCCcHHHHHHHHHhhcccCCCEEEEEEECCCCCcH-HHHHHHHHHHH----cCCCEEEEEECccccCHH
Confidence 344678999999999988776555554 68999999998765322 22233333332 368999999999986522
Q ss_pred CH----HHHHhHcCcccc---------------------CCcceEEEEeeecCCCCHHHHHHHHHH
Q 029517 130 SA----DELARYLDLKKL---------------------DERVCMFEAVSGYDGFGIKESVEWLVE 170 (192)
Q Consensus 130 ~~----~~~~~~~~~~~~---------------------~~~~~~~~~~Sa~~~~gi~e~~~~i~~ 170 (192)
.. +++.+.++.... .....+++.+||.+|.|++++...|..
T Consensus 155 ~~~~~~~~l~~~L~~~g~~~~p~~~~~~~~~~~~~~~~~~~~~~pi~~vSavtg~Gi~~L~~~L~~ 220 (224)
T cd04165 155 ILQETLKDLKRILKVPGVRKLPVPVKSDDDVVLAASNFSSERIVPIFQVSNVTGEGLDLLHAFLNL 220 (224)
T ss_pred HHHHHHHHHHHHhcCCCccccceeeecccceeehhhcCCccccCcEEEeeCCCccCHHHHHHHHHh
Confidence 22 223333331100 122458999999999999999887643
No 253
>PTZ00141 elongation factor 1- alpha; Provisional
Probab=99.32 E-value=1.6e-11 Score=101.43 Aligned_cols=119 Identities=15% Similarity=0.202 Sum_probs=79.6
Q ss_pred CCCcceEEEEEEecCEEEEEEeCCCCcccHHHHHHhhhcCCEEEEEEeCCCccc---H---HHHHHHHHHHHhCCCCCCC
Q 029517 41 VPTVGLNIGRIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSR---F---EDSKTALEKVLRNEDLQGA 114 (192)
Q Consensus 41 ~~T~g~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ii~v~D~~~~~s---~---~~~~~~~~~i~~~~~~~~~ 114 (192)
..|+...+..+..++..+.|+|||||.+|.......+..+|++++|+|++...- + ....+.+..+.. .++
T Consensus 70 GiTid~~~~~~~~~~~~i~lIDtPGh~~f~~~~~~g~~~aD~ailVVda~~G~~e~~~~~~~qT~eh~~~~~~----~gi 145 (446)
T PTZ00141 70 GITIDIALWKFETPKYYFTIIDAPGHRDFIKNMITGTSQADVAILVVASTAGEFEAGISKDGQTREHALLAFT----LGV 145 (446)
T ss_pred CEeEEeeeEEEccCCeEEEEEECCChHHHHHHHHHhhhhcCEEEEEEEcCCCceecccCCCccHHHHHHHHHH----cCC
Confidence 446666666777788999999999999998888888899999999999986420 0 122222222222 355
Q ss_pred c-EEEEEeCCCCCCC----CC----HHHHHhHcCccccCCcceEEEEeeecCCCCHHH
Q 029517 115 P-LLILANKQDLPDA----VS----ADELARYLDLKKLDERVCMFEAVSGYDGFGIKE 163 (192)
Q Consensus 115 p-iiiv~nK~Dl~~~----~~----~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~e 163 (192)
| +++++||+|.... .. .+++.+.+....+....++++++||.+|.|+.+
T Consensus 146 ~~iiv~vNKmD~~~~~~~~~~~~~i~~~i~~~l~~~g~~~~~~~~ipiSa~~g~ni~~ 203 (446)
T PTZ00141 146 KQMIVCINKMDDKTVNYSQERYDEIKKEVSAYLKKVGYNPEKVPFIPISGWQGDNMIE 203 (446)
T ss_pred CeEEEEEEccccccchhhHHHHHHHHHHHHHHHHhcCCCcccceEEEeecccCCCccc
Confidence 5 7799999995421 11 233333333112222368899999999999964
No 254
>TIGR00503 prfC peptide chain release factor 3. This translation releasing factor, RF-3 (prfC) was originally described as stop codon-independent, in contrast to peptide chain release factor 1 (RF-1, prfA) and RF-2 (prfB). RF-1 and RF-2 are closely related to each other, while RF-3 is similar to elongation factors EF-Tu and EF-G; RF-1 is active at UAA and UAG and RF-2 is active at UAA and UGA. More recently, RF-3 was shown to be active primarily at UGA stop codons in E. coli. All bacteria and organelles have RF-1. The Mycoplasmas and organelles, which translate UGA as Trp rather than as a stop codon, lack RF-2. RF-3, in contrast, seems to be rare among bacteria and is found so far only in Escherichia coli and some other gamma subdivision Proteobacteria, in Synechocystis PCC6803, and in Staphylococcus aureus.
Probab=99.31 E-value=4.8e-11 Score=100.29 Aligned_cols=79 Identities=18% Similarity=0.221 Sum_probs=58.8
Q ss_pred cceEEEEEEecCEEEEEEeCCCCcccHHHHHHhhhcCCEEEEEEeCCCcccHHHHHHHHHHHHhCCCCCCCcEEEEEeCC
Q 029517 44 VGLNIGRIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQ 123 (192)
Q Consensus 44 ~g~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ii~v~D~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~ 123 (192)
+......+.++++.+.+|||||+.+|......+++.+|++|+|+|+++.-. .....++. +... .++|+++++||+
T Consensus 68 i~~~~~~~~~~~~~inliDTPG~~df~~~~~~~l~~aD~aIlVvDa~~gv~-~~t~~l~~-~~~~---~~~PiivviNKi 142 (527)
T TIGR00503 68 ITTSVMQFPYRDCLVNLLDTPGHEDFSEDTYRTLTAVDNCLMVIDAAKGVE-TRTRKLME-VTRL---RDTPIFTFMNKL 142 (527)
T ss_pred EEEEEEEEeeCCeEEEEEECCChhhHHHHHHHHHHhCCEEEEEEECCCCCC-HHHHHHHH-HHHh---cCCCEEEEEECc
Confidence 333344577789999999999999988877778999999999999986522 12223333 3333 468999999999
Q ss_pred CCCC
Q 029517 124 DLPD 127 (192)
Q Consensus 124 Dl~~ 127 (192)
|+..
T Consensus 143 D~~~ 146 (527)
T TIGR00503 143 DRDI 146 (527)
T ss_pred cccC
Confidence 9853
No 255
>KOG1423 consensus Ras-like GTPase ERA [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]
Probab=99.30 E-value=2.1e-11 Score=93.59 Aligned_cols=152 Identities=20% Similarity=0.176 Sum_probs=96.8
Q ss_pred hhhccccHHHHHHHHhhhhccCCCCCCCCCCCCcceEEEEEEecCEEEEEEeCCCCc------ccHH------HHHHhhh
Q 029517 11 YIFTKTEFHTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQP------GLRS------IWEKYYE 78 (192)
Q Consensus 11 ~~~kst~~~~l~~~~~~~~~~~~~~~~~~~~~T~g~~~~~~~~~~~~~~i~D~~G~~------~~~~------~~~~~~~ 78 (192)
+.=|||+-|.++++..+.++...++++... .+.+..++.++.++||||-- ++.. .....+.
T Consensus 82 NvGKStLtN~mig~kv~~vS~K~~TTr~~i-------lgi~ts~eTQlvf~DTPGlvs~~~~r~~~l~~s~lq~~~~a~q 154 (379)
T KOG1423|consen 82 NVGKSTLTNQMIGQKVSAVSRKVHTTRHRI-------LGIITSGETQLVFYDTPGLVSKKMHRRHHLMMSVLQNPRDAAQ 154 (379)
T ss_pred CcchhhhhhHhhCCccccccccccceeeee-------eEEEecCceEEEEecCCcccccchhhhHHHHHHhhhCHHHHHh
Confidence 345899999999998887766555554442 44566778999999999921 1111 1223467
Q ss_pred cCCEEEEEEeCCCcccHHHHHHHHHHHHhCCCCCCCcEEEEEeCCCCCCC---------------CC--HHHHHhHcCcc
Q 029517 79 EAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDA---------------VS--ADELARYLDLK 141 (192)
Q Consensus 79 ~~d~ii~v~D~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~~---------------~~--~~~~~~~~~~~ 141 (192)
.+|+++.|+|+++....-.- ..+.-+..+ ..+|-++|+||+|...+ .. .-++++.+...
T Consensus 155 ~AD~vvVv~Das~tr~~l~p-~vl~~l~~y---s~ips~lvmnkid~~k~k~~Ll~l~~~Lt~g~l~~~kl~v~~~f~~~ 230 (379)
T KOG1423|consen 155 NADCVVVVVDASATRTPLHP-RVLHMLEEY---SKIPSILVMNKIDKLKQKRLLLNLKDLLTNGELAKLKLEVQEKFTDV 230 (379)
T ss_pred hCCEEEEEEeccCCcCccCh-HHHHHHHHH---hcCCceeeccchhcchhhhHHhhhHHhccccccchhhhhHHHHhccC
Confidence 89999999999864322111 111222223 57899999999997541 11 12222222210
Q ss_pred c-----c---C-CcceEEEEeeecCCCCHHHHHHHHHHHHH
Q 029517 142 K-----L---D-ERVCMFEAVSGYDGFGIKESVEWLVEVME 173 (192)
Q Consensus 142 ~-----~---~-~~~~~~~~~Sa~~~~gi~e~~~~i~~~i~ 173 (192)
. . . .+--.+|.+||+.|.||+|+.++|..++.
T Consensus 231 p~~~~~~~~~gwshfe~vF~vSaL~G~GikdlkqyLmsqa~ 271 (379)
T KOG1423|consen 231 PSDEKWRTICGWSHFERVFMVSALYGEGIKDLKQYLMSQAP 271 (379)
T ss_pred CcccccccccCcccceeEEEEecccccCHHHHHHHHHhcCC
Confidence 0 0 0 11234899999999999999999987664
No 256
>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional
Probab=99.30 E-value=2.6e-11 Score=104.37 Aligned_cols=146 Identities=17% Similarity=0.105 Sum_probs=89.8
Q ss_pred ccccHHHHHHHHhhhhcc----------CCCCCCC---------------CCCCCcceEEEEEEecCEEEEEEeCCCCcc
Q 029517 14 TKTEFHTLLEKLKSVYSN----------VEGLPPD---------------RIVPTVGLNIGRIEVSNSKLVFWDLGGQPG 68 (192)
Q Consensus 14 kst~~~~l~~~~~~~~~~----------~~~~~~~---------------~~~~T~g~~~~~~~~~~~~~~i~D~~G~~~ 68 (192)
|||++++|++..-.+..+ ..+.+.+ ....|+...+..+..++.++.++||||+++
T Consensus 37 KSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~tr~~~~~~~~~d~~~~E~~rg~Tid~~~~~~~~~~~~~~liDtPG~~~ 116 (632)
T PRK05506 37 KSTLIGRLLYDSKMIFEDQLAALERDSKKVGTQGDEIDLALLVDGLAAEREQGITIDVAYRYFATPKRKFIVADTPGHEQ 116 (632)
T ss_pred hHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCCCCcceeeeeccCCHHHHhCCcCceeeeeEEccCCceEEEEECCChHH
Confidence 899999999866543321 1222110 123455565666777788999999999998
Q ss_pred cHHHHHHhhhcCCEEEEEEeCCCcccHHHHHHHHHHHHhCCCCCCCcEEEEEeCCCCCCC--CCHHHHHhHcC--ccccC
Q 029517 69 LRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDA--VSADELARYLD--LKKLD 144 (192)
Q Consensus 69 ~~~~~~~~~~~~d~ii~v~D~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~~--~~~~~~~~~~~--~~~~~ 144 (192)
|.......+..+|++++|+|+.....-+. .+.+..+... ...|+++++||+|+.+. ...+++...+. +....
T Consensus 117 f~~~~~~~~~~aD~~llVvda~~g~~~~t-~e~~~~~~~~---~~~~iivvvNK~D~~~~~~~~~~~i~~~i~~~~~~~~ 192 (632)
T PRK05506 117 YTRNMVTGASTADLAIILVDARKGVLTQT-RRHSFIASLL---GIRHVVLAVNKMDLVDYDQEVFDEIVADYRAFAAKLG 192 (632)
T ss_pred HHHHHHHHHHhCCEEEEEEECCCCccccC-HHHHHHHHHh---CCCeEEEEEEecccccchhHHHHHHHHHHHHHHHHcC
Confidence 87766667889999999999975532211 1111112222 23688999999998641 11122222111 00111
Q ss_pred CcceEEEEeeecCCCCHHH
Q 029517 145 ERVCMFEAVSGYDGFGIKE 163 (192)
Q Consensus 145 ~~~~~~~~~Sa~~~~gi~e 163 (192)
....+++++||++|.|+.+
T Consensus 193 ~~~~~iipiSA~~g~ni~~ 211 (632)
T PRK05506 193 LHDVTFIPISALKGDNVVT 211 (632)
T ss_pred CCCccEEEEecccCCCccc
Confidence 2246789999999999985
No 257
>PTZ00327 eukaryotic translation initiation factor 2 gamma subunit; Provisional
Probab=99.29 E-value=2.6e-11 Score=100.14 Aligned_cols=113 Identities=16% Similarity=0.148 Sum_probs=77.7
Q ss_pred EEEEEEeCCCCcccHHHHHHhhhcCCEEEEEEeCCCcc-cHHHHHHHHHHHHhCCCCCCCcEEEEEeCCCCCCCCC----
Q 029517 56 SKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPS-RFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAVS---- 130 (192)
Q Consensus 56 ~~~~i~D~~G~~~~~~~~~~~~~~~d~ii~v~D~~~~~-s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~~~~---- 130 (192)
.++.++|+|||++|......-+..+|++++|+|+..+. ..+. .+.+. +.... .-.|+++++||+|+.+...
T Consensus 117 ~~i~~IDtPGH~~fi~~m~~g~~~~D~alLVVda~~g~~~~qT-~ehl~-i~~~l--gi~~iIVvlNKiDlv~~~~~~~~ 192 (460)
T PTZ00327 117 RHVSFVDCPGHDILMATMLNGAAVMDAALLLIAANESCPQPQT-SEHLA-AVEIM--KLKHIIILQNKIDLVKEAQAQDQ 192 (460)
T ss_pred ceEeeeeCCCHHHHHHHHHHHHhhCCEEEEEEECCCCccchhh-HHHHH-HHHHc--CCCcEEEEEecccccCHHHHHHH
Confidence 47899999999999887777788999999999998642 2222 22222 22221 2357899999999875211
Q ss_pred HHHHHhHcCccccCCcceEEEEeeecCCCCHHHHHHHHHHHHHh
Q 029517 131 ADELARYLDLKKLDERVCMFEAVSGYDGFGIKESVEWLVEVMER 174 (192)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~e~~~~i~~~i~~ 174 (192)
.+++.+++.. ......+++++||++|.|++++++.|.+.+..
T Consensus 193 ~~ei~~~l~~--~~~~~~~iipVSA~~G~nI~~Ll~~L~~~lp~ 234 (460)
T PTZ00327 193 YEEIRNFVKG--TIADNAPIIPISAQLKYNIDVVLEYICTQIPI 234 (460)
T ss_pred HHHHHHHHHh--hccCCCeEEEeeCCCCCCHHHHHHHHHhhCCC
Confidence 2233333321 11246799999999999999999999875543
No 258
>PRK00049 elongation factor Tu; Reviewed
Probab=99.28 E-value=7.5e-11 Score=96.27 Aligned_cols=154 Identities=14% Similarity=0.070 Sum_probs=92.0
Q ss_pred ccccHHHHHHHHhhhhcc------CCCCCCC--CCCCCcceEEEEEEecCEEEEEEeCCCCcccHHHHHHhhhcCCEEEE
Q 029517 14 TKTEFHTLLEKLKSVYSN------VEGLPPD--RIVPTVGLNIGRIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVF 85 (192)
Q Consensus 14 kst~~~~l~~~~~~~~~~------~~~~~~~--~~~~T~g~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ii~ 85 (192)
|||+.++|++........ ..+...+ ....|+......+..++..+.+.||||+.+|.......+..+|++++
T Consensus 25 KSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~i~~iDtPG~~~f~~~~~~~~~~aD~~ll 104 (396)
T PRK00049 25 KTTLTAAITKVLAKKGGAEAKAYDQIDKAPEEKARGITINTAHVEYETEKRHYAHVDCPGHADYVKNMITGAAQMDGAIL 104 (396)
T ss_pred HHHHHHHHHHhhhhccCCcccchhhccCChHHHhcCeEEeeeEEEEcCCCeEEEEEECCCHHHHHHHHHhhhccCCEEEE
Confidence 899999998754221000 0011111 22334444444455567789999999999887777777889999999
Q ss_pred EEeCCCcccHHHHHHHHHHHHhCCCCCCCcEE-EEEeCCCCCCCCC-H----HHHHhHcCccccCCcceEEEEeeecCCC
Q 029517 86 VIDAACPSRFEDSKTALEKVLRNEDLQGAPLL-ILANKQDLPDAVS-A----DELARYLDLKKLDERVCMFEAVSGYDGF 159 (192)
Q Consensus 86 v~D~~~~~s~~~~~~~~~~i~~~~~~~~~pii-iv~nK~Dl~~~~~-~----~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 159 (192)
|+|+.....- ...+.+..+.. .++|.+ +++||+|+.+... . +++.+++..........+++++||++|.
T Consensus 105 VVDa~~g~~~-qt~~~~~~~~~----~g~p~iiVvvNK~D~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~iv~iSa~~g~ 179 (396)
T PRK00049 105 VVSAADGPMP-QTREHILLARQ----VGVPYIVVFLNKCDMVDDEELLELVEMEVRELLSKYDFPGDDTPIIRGSALKAL 179 (396)
T ss_pred EEECCCCCch-HHHHHHHHHHH----cCCCEEEEEEeecCCcchHHHHHHHHHHHHHHHHhcCCCccCCcEEEeeccccc
Confidence 9999865322 22233333332 357876 5899999864111 1 1333333211111235789999999875
Q ss_pred ----------CHHHHHHHHHHHH
Q 029517 160 ----------GIKESVEWLVEVM 172 (192)
Q Consensus 160 ----------gi~e~~~~i~~~i 172 (192)
|+..+++.|...+
T Consensus 180 ~~~~~~~w~~~~~~ll~~l~~~~ 202 (396)
T PRK00049 180 EGDDDEEWEKKILELMDAVDSYI 202 (396)
T ss_pred CCCCcccccccHHHHHHHHHhcC
Confidence 4566666666543
No 259
>KOG1145 consensus Mitochondrial translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.27 E-value=1.1e-10 Score=95.64 Aligned_cols=113 Identities=16% Similarity=0.192 Sum_probs=83.1
Q ss_pred cCEEEEEEeCCCCcccHHHHHHhhhcCCEEEEEEeCCCcccHHHHHHHHHHHHhCCCCCCCcEEEEEeCCCCCCCCCHHH
Q 029517 54 SNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAVSADE 133 (192)
Q Consensus 54 ~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ii~v~D~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~~~~~~~ 133 (192)
.+-.+.|.|||||..|..++..--+-+|.+++|+.+.|.--.+.+. .|... ...+.|+++.+||+|.+++....-
T Consensus 199 ~G~~iTFLDTPGHaAF~aMRaRGA~vtDIvVLVVAadDGVmpQT~E----aIkhA-k~A~VpiVvAinKiDkp~a~pekv 273 (683)
T KOG1145|consen 199 SGKSITFLDTPGHAAFSAMRARGANVTDIVVLVVAADDGVMPQTLE----AIKHA-KSANVPIVVAINKIDKPGANPEKV 273 (683)
T ss_pred CCCEEEEecCCcHHHHHHHHhccCccccEEEEEEEccCCccHhHHH----HHHHH-HhcCCCEEEEEeccCCCCCCHHHH
Confidence 4578999999999999999998888899999999988764333322 22211 125899999999999997654444
Q ss_pred HHhHcCcccc--C--CcceEEEEeeecCCCCHHHHHHHHHHHH
Q 029517 134 LARYLDLKKL--D--ERVCMFEAVSGYDGFGIKESVEWLVEVM 172 (192)
Q Consensus 134 ~~~~~~~~~~--~--~~~~~~~~~Sa~~~~gi~e~~~~i~~~i 172 (192)
..+++. ..+ + ....+++++||++|.|++.+-+++.-..
T Consensus 274 ~~eL~~-~gi~~E~~GGdVQvipiSAl~g~nl~~L~eaill~A 315 (683)
T KOG1145|consen 274 KRELLS-QGIVVEDLGGDVQVIPISALTGENLDLLEEAILLLA 315 (683)
T ss_pred HHHHHH-cCccHHHcCCceeEEEeecccCCChHHHHHHHHHHH
Confidence 444443 111 1 2358899999999999999999987544
No 260
>PLN03127 Elongation factor Tu; Provisional
Probab=99.27 E-value=1.3e-10 Score=96.05 Aligned_cols=128 Identities=17% Similarity=0.138 Sum_probs=80.2
Q ss_pred CCCcceEEEEEEecCEEEEEEeCCCCcccHHHHHHhhhcCCEEEEEEeCCCcccHHHHHHHHHHHHhCCCCCCCc-EEEE
Q 029517 41 VPTVGLNIGRIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAP-LLIL 119 (192)
Q Consensus 41 ~~T~g~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ii~v~D~~~~~s~~~~~~~~~~i~~~~~~~~~p-iiiv 119 (192)
..|+......+..++.++.+.||||+.+|......-...+|++++|+|+.....-+ ..+.+..+.. .++| ++++
T Consensus 109 GiTi~~~~~~~~~~~~~i~~iDtPGh~~f~~~~~~g~~~aD~allVVda~~g~~~q-t~e~l~~~~~----~gip~iIvv 183 (447)
T PLN03127 109 GITIATAHVEYETAKRHYAHVDCPGHADYVKNMITGAAQMDGGILVVSAPDGPMPQ-TKEHILLARQ----VGVPSLVVF 183 (447)
T ss_pred CceeeeeEEEEcCCCeEEEEEECCCccchHHHHHHHHhhCCEEEEEEECCCCCchh-HHHHHHHHHH----cCCCeEEEE
Confidence 44666655666667789999999999988776666677899999999997653222 2233333322 3678 5788
Q ss_pred EeCCCCCCCCC-HH----HHHhHcCccccCCcceEEEEeeec---CCCC-------HHHHHHHHHHHHH
Q 029517 120 ANKQDLPDAVS-AD----ELARYLDLKKLDERVCMFEAVSGY---DGFG-------IKESVEWLVEVME 173 (192)
Q Consensus 120 ~nK~Dl~~~~~-~~----~~~~~~~~~~~~~~~~~~~~~Sa~---~~~g-------i~e~~~~i~~~i~ 173 (192)
+||+|+.+... .+ ++.+++.........++++++||. +|.| +.++++++.+.+.
T Consensus 184 iNKiDlv~~~~~~~~i~~~i~~~l~~~~~~~~~vpiip~Sa~sa~~g~n~~~~~~~i~~Ll~~l~~~lp 252 (447)
T PLN03127 184 LNKVDVVDDEELLELVEMELRELLSFYKFPGDEIPIIRGSALSALQGTNDEIGKNAILKLMDAVDEYIP 252 (447)
T ss_pred EEeeccCCHHHHHHHHHHHHHHHHHHhCCCCCcceEEEeccceeecCCCcccccchHHHHHHHHHHhCC
Confidence 99999874111 11 222222211111235788888775 4555 6777777766543
No 261
>PRK12739 elongation factor G; Reviewed
Probab=99.21 E-value=4.3e-10 Score=97.82 Aligned_cols=110 Identities=15% Similarity=0.077 Sum_probs=75.1
Q ss_pred hccccHHHHHHHHhhh--hccCCC------CCC--CCCCCCcceEEEEEEecCEEEEEEeCCCCcccHHHHHHhhhcCCE
Q 029517 13 FTKTEFHTLLEKLKSV--YSNVEG------LPP--DRIVPTVGLNIGRIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHA 82 (192)
Q Consensus 13 ~kst~~~~l~~~~~~~--~~~~~~------~~~--~~~~~T~g~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ 82 (192)
=|||++++|+...-.. ...+.+ ... ....-|+......+..++.++.++||||+.+|...+...++.+|+
T Consensus 20 GKsTL~~~ll~~~g~~~~~~~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~i~liDTPG~~~f~~e~~~al~~~D~ 99 (691)
T PRK12739 20 GKTTTTERILYYTGKSHKIGEVHDGAATMDWMEQEQERGITITSAATTCFWKGHRINIIDTPGHVDFTIEVERSLRVLDG 99 (691)
T ss_pred CHHHHHHHHHHhCCCccccccccCCccccCCChhHhhcCCCccceeEEEEECCEEEEEEcCCCHHHHHHHHHHHHHHhCe
Confidence 3899999998643211 011111 000 122446666666787888999999999999888888899999999
Q ss_pred EEEEEeCCCcccHHHHHHHHHHHHhCCCCCCCcEEEEEeCCCCCC
Q 029517 83 VVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPD 127 (192)
Q Consensus 83 ii~v~D~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~ 127 (192)
+++|+|+.+...-+.. ..+..+.. .++|+++++||+|+..
T Consensus 100 ~ilVvDa~~g~~~qt~-~i~~~~~~----~~~p~iv~iNK~D~~~ 139 (691)
T PRK12739 100 AVAVFDAVSGVEPQSE-TVWRQADK----YGVPRIVFVNKMDRIG 139 (691)
T ss_pred EEEEEeCCCCCCHHHH-HHHHHHHH----cCCCEEEEEECCCCCC
Confidence 9999999876433322 22222322 3689999999999874
No 262
>KOG0082 consensus G-protein alpha subunit (small G protein superfamily) [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]
Probab=99.20 E-value=3.5e-10 Score=89.42 Aligned_cols=138 Identities=21% Similarity=0.387 Sum_probs=108.3
Q ss_pred CCCCCcceEEEEEEecCEEEEEEeCCCCcccHHHHHHhhhcCCEEEEEEeCCC----------cccHHHHHHHHHHHHhC
Q 029517 39 RIVPTVGLNIGRIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAAC----------PSRFEDSKTALEKVLRN 108 (192)
Q Consensus 39 ~~~~T~g~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ii~v~D~~~----------~~s~~~~~~~~~~i~~~ 108 (192)
...||.|+....+..++.++.+.|+|||..-+.-|.+++.+++++|||+++++ .....+...+++.++..
T Consensus 178 ~R~~T~GI~e~~F~~k~~~f~~~DvGGQRseRrKWihcFe~v~aviF~vslSeYdq~l~ED~~~NRM~eS~~LF~sI~n~ 257 (354)
T KOG0082|consen 178 SRVPTTGIVEVEFTIKGLKFRMFDVGGQRSERKKWIHCFEDVTAVIFCVSLSEYDQVLEEDETTNRMHESLKLFESICNN 257 (354)
T ss_pred hccCcCCeeEEEEEeCCCceEEEeCCCcHHHhhhHHHhhcCCCEEEEEEehhhhhhhcccccchhHHHHHHHHHHHHhcC
Confidence 44789999999999999999999999999889999999999999999998763 23445667788888888
Q ss_pred CCCCCCcEEEEEeCCCCCC-----------------CCCHHHHHhHcC-----ccccCCcceEEEEeeecCCCCHHHHHH
Q 029517 109 EDLQGAPLLILANKQDLPD-----------------AVSADELARYLD-----LKKLDERVCMFEAVSGYDGFGIKESVE 166 (192)
Q Consensus 109 ~~~~~~piiiv~nK~Dl~~-----------------~~~~~~~~~~~~-----~~~~~~~~~~~~~~Sa~~~~gi~e~~~ 166 (192)
....+.++++++||.|+-+ ....+++..++. +..-..+.+-+..+.|.+-.+|+.+|+
T Consensus 258 ~~F~~tsiiLFLNK~DLFeEKi~~~~~~~~Fpdy~G~~~~~~a~~yI~~kF~~l~~~~~k~iy~h~T~AtDT~nv~~vf~ 337 (354)
T KOG0082|consen 258 KWFANTSIILFLNKKDLFEEKIKKVPLTDCFPDYKGVNTYEEAAKYIRKKFEELNKNKDKKIYVHFTCATDTQNVQFVFD 337 (354)
T ss_pred cccccCcEEEEeecHHHHHHHhccCchhhhCcCCCCCCChHHHHHHHHHHHHHHhcccCCcceEEEEeeccHHHHHHHHH
Confidence 8888999999999999832 223344444443 111112566677889999999999999
Q ss_pred HHHHHHHhcc
Q 029517 167 WLVEVMERSK 176 (192)
Q Consensus 167 ~i~~~i~~~~ 176 (192)
.+.+.+....
T Consensus 338 av~d~Ii~~n 347 (354)
T KOG0082|consen 338 AVTDTIIQNN 347 (354)
T ss_pred HHHHHHHHHH
Confidence 9998887653
No 263
>PF09439 SRPRB: Signal recognition particle receptor beta subunit; InterPro: IPR019009 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. The SR receptor is a monomer consisting of the loosely membrane-associated SR-alpha homologue FtsY, while the eukaryotic SR receptor is a heterodimer of SR-alpha (70 kDa) and SR-beta (25 kDa), both of which contain a GTP-binding domain []. SR-alpha regulates the targeting of SRP-ribosome-nascent polypeptide complexes to the translocon []. SR-alpha binds to the SRP54 subunit of the SRP complex. The SR-beta subunit is a transmembrane GTPase that anchors the SR-alpha subunit (a peripheral membrane GTPase) to the ER membrane []. SR-beta interacts with the N-terminal SRX-domain of SR-alpha, which is not present in the bacterial FtsY homologue. SR-beta also functions in recruiting the SRP-nascent polypeptide to the protein-conducting channel. The beta subunit of the signal recognition particle receptor (SRP) is a transmembrane GTPase, which anchors the alpha subunit to the endoplasmic reticulum membrane []. ; PDB: 2GED_B 1NRJ_B 2GO5_2 2FH5_B.
Probab=99.20 E-value=4.2e-12 Score=92.01 Aligned_cols=85 Identities=31% Similarity=0.518 Sum_probs=59.6
Q ss_pred CEEEEEEeCCCCcccHHHHHH---hhhcCCEEEEEEeCCC-cccHHHHHHHHHHHHhCCC--CCCCcEEEEEeCCCCCCC
Q 029517 55 NSKLVFWDLGGQPGLRSIWEK---YYEEAHAVVFVIDAAC-PSRFEDSKTALEKVLRNED--LQGAPLLILANKQDLPDA 128 (192)
Q Consensus 55 ~~~~~i~D~~G~~~~~~~~~~---~~~~~d~ii~v~D~~~-~~s~~~~~~~~~~i~~~~~--~~~~piiiv~nK~Dl~~~ 128 (192)
...+.++|+|||.+.+..... +...+.+||||+|++. ...+.++.+++..++.... ...+|+++++||.|+..+
T Consensus 48 ~~~~~lvD~PGH~rlr~~~~~~~~~~~~~k~IIfvvDSs~~~~~~~~~Ae~Ly~iL~~~~~~~~~~piLIacNK~Dl~~A 127 (181)
T PF09439_consen 48 GKKLRLVDIPGHPRLRSKLLDELKYLSNAKGIIFVVDSSTDQKELRDVAEYLYDILSDTEVQKNKPPILIACNKQDLFTA 127 (181)
T ss_dssp GTCECEEEETT-HCCCHHHHHHHHHHGGEEEEEEEEETTTHHHHHHHHHHHHHHHHHHHHCCTT--EEEEEEE-TTSTT-
T ss_pred CCEEEEEECCCcHHHHHHHHHhhhchhhCCEEEEEEeCccchhhHHHHHHHHHHHHHhhhhccCCCCEEEEEeCcccccc
Confidence 457999999999988764433 5889999999999973 4567777777777775422 357899999999999877
Q ss_pred CCHHHHHhHcC
Q 029517 129 VSADELARYLD 139 (192)
Q Consensus 129 ~~~~~~~~~~~ 139 (192)
.+...+...++
T Consensus 128 ~~~~~Ik~~LE 138 (181)
T PF09439_consen 128 KPPKKIKKLLE 138 (181)
T ss_dssp --HHHHHHHHH
T ss_pred CCHHHHHHHHH
Confidence 66666666654
No 264
>cd01859 MJ1464 MJ1464. This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.
Probab=99.16 E-value=2e-10 Score=82.00 Aligned_cols=96 Identities=22% Similarity=0.222 Sum_probs=64.4
Q ss_pred cHHHHHHhhhcCCEEEEEEeCCCcccHHHHHHHHHHHHhCCCCCCCcEEEEEeCCCCCCCCCHHHHHhHcCccccCCcce
Q 029517 69 LRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAVSADELARYLDLKKLDERVC 148 (192)
Q Consensus 69 ~~~~~~~~~~~~d~ii~v~D~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~ 148 (192)
++.++.++++++|++++|+|++++..... ..+...... .++|+++|+||+|+......+....+.. ..+.
T Consensus 2 ~~~~~~~i~~~aD~vl~V~D~~~~~~~~~--~~l~~~~~~---~~~p~iiv~NK~Dl~~~~~~~~~~~~~~-----~~~~ 71 (156)
T cd01859 2 WKRLVRRIIKESDVVLEVLDARDPELTRS--RKLERYVLE---LGKKLLIVLNKADLVPKEVLEKWKSIKE-----SEGI 71 (156)
T ss_pred HHHHHHHHHhhCCEEEEEeeCCCCcccCC--HHHHHHHHh---CCCcEEEEEEhHHhCCHHHHHHHHHHHH-----hCCC
Confidence 35667788889999999999987542221 112222222 3689999999999864211122211221 2346
Q ss_pred EEEEeeecCCCCHHHHHHHHHHHHHh
Q 029517 149 MFEAVSGYDGFGIKESVEWLVEVMER 174 (192)
Q Consensus 149 ~~~~~Sa~~~~gi~e~~~~i~~~i~~ 174 (192)
+++.+||+++.|++++++.+.+.+..
T Consensus 72 ~~~~iSa~~~~gi~~L~~~l~~~~~~ 97 (156)
T cd01859 72 PVVYVSAKERLGTKILRRTIKELAKI 97 (156)
T ss_pred cEEEEEccccccHHHHHHHHHHHHhh
Confidence 78999999999999999999887653
No 265
>PRK09866 hypothetical protein; Provisional
Probab=99.16 E-value=7.5e-10 Score=93.31 Aligned_cols=127 Identities=23% Similarity=0.256 Sum_probs=83.3
Q ss_pred CCCcceEEEEEEec---CEEEEEEeCCCCcc-----cHHHHHHhhhcCCEEEEEEeCCCcccHHHHHHHHHHHHhCCCCC
Q 029517 41 VPTVGLNIGRIEVS---NSKLVFWDLGGQPG-----LRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQ 112 (192)
Q Consensus 41 ~~T~g~~~~~~~~~---~~~~~i~D~~G~~~-----~~~~~~~~~~~~d~ii~v~D~~~~~s~~~~~~~~~~i~~~~~~~ 112 (192)
.|.+.+++.++.+. ...+.|+||||-.. ........++.+|++++|+|.+...+... ....+.+.+.. .
T Consensus 212 ~p~iev~f~hl~g~l~~~~QIIFVDTPGIhk~~~~~L~k~M~eqL~eADvVLFVVDat~~~s~~D-eeIlk~Lkk~~--K 288 (741)
T PRK09866 212 IPVIEVEFVHLAGLESYPGQLTLLDTPGPNEAGQPHLQKMLNQQLARASAVLAVLDYTQLKSISD-EEVREAILAVG--Q 288 (741)
T ss_pred CceeeeeeeeccccccccCCEEEEECCCCCCccchHHHHHHHHHHhhCCEEEEEEeCCCCCChhH-HHHHHHHHhcC--C
Confidence 46677777776542 35789999999532 23334457899999999999987543333 12223332221 1
Q ss_pred CCcEEEEEeCCCCCCCC--CHHHHHhHcC--ccccCCcceEEEEeeecCCCCHHHHHHHHHH
Q 029517 113 GAPLLILANKQDLPDAV--SADELARYLD--LKKLDERVCMFEAVSGYDGFGIKESVEWLVE 170 (192)
Q Consensus 113 ~~piiiv~nK~Dl~~~~--~~~~~~~~~~--~~~~~~~~~~~~~~Sa~~~~gi~e~~~~i~~ 170 (192)
..|+++|+||+|+.+.. ..+.+.+++. +.........++++||++|.|++++.+.|..
T Consensus 289 ~~PVILVVNKIDl~dreeddkE~Lle~V~~~L~q~~i~f~eIfPVSAlkG~nid~LLdeI~~ 350 (741)
T PRK09866 289 SVPLYVLVNKFDQQDRNSDDADQVRALISGTLMKGCITPQQIFPVSSMWGYLANRARHELAN 350 (741)
T ss_pred CCCEEEEEEcccCCCcccchHHHHHHHHHHHHHhcCCCCceEEEEeCCCCCCHHHHHHHHHh
Confidence 25999999999986422 2455555432 1011122457999999999999999999887
No 266
>cd04104 p47_IIGP_like p47 (47-kDa) family. The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei
Probab=99.13 E-value=2.8e-10 Score=84.40 Aligned_cols=118 Identities=15% Similarity=0.233 Sum_probs=72.0
Q ss_pred EEEEEEeCCCCcccHHHHHHh-----hhcCCEEEEEEeCCCcccHHHHH-HHHHHHHhCCCCCCCcEEEEEeCCCCCCCC
Q 029517 56 SKLVFWDLGGQPGLRSIWEKY-----YEEAHAVVFVIDAACPSRFEDSK-TALEKVLRNEDLQGAPLLILANKQDLPDAV 129 (192)
Q Consensus 56 ~~~~i~D~~G~~~~~~~~~~~-----~~~~d~ii~v~D~~~~~s~~~~~-~~~~~i~~~~~~~~~piiiv~nK~Dl~~~~ 129 (192)
..+.+||+||..........| +.++|++++|.|.. +.... .++..+... +.|+++|+||+|+....
T Consensus 52 ~~l~l~DtpG~~~~~~~~~~~l~~~~~~~~d~~l~v~~~~----~~~~d~~~~~~l~~~----~~~~ilV~nK~D~~~~~ 123 (197)
T cd04104 52 PNVTLWDLPGIGSTAFPPDDYLEEMKFSEYDFFIIISSTR----FSSNDVKLAKAIQCM----GKKFYFVRTKVDRDLSN 123 (197)
T ss_pred CCceEEeCCCCCcccCCHHHHHHHhCccCcCEEEEEeCCC----CCHHHHHHHHHHHHh----CCCEEEEEecccchhhh
Confidence 378999999975322222222 56789988885432 33333 333333332 58999999999984311
Q ss_pred ---------CHHHHHhHcC------ccccCCcceEEEEeeec--CCCCHHHHHHHHHHHHHhcchhhhh
Q 029517 130 ---------SADELARYLD------LKKLDERVCMFEAVSGY--DGFGIKESVEWLVEVMERSKRTEML 181 (192)
Q Consensus 130 ---------~~~~~~~~~~------~~~~~~~~~~~~~~Sa~--~~~gi~e~~~~i~~~i~~~~~~~~~ 181 (192)
..+++.+.+. +........++|.+|+. .+.|+..+.+.+...+.+.++.-.+
T Consensus 124 ~~~~~~~~~~~~~~l~~i~~~~~~~~~~~~~~~p~v~~vS~~~~~~~~~~~l~~~~~~~l~~~~~~~~~ 192 (197)
T cd04104 124 EQRSKPRSFNREQVLQEIRDNCLENLQEAGVSEPPVFLVSNFDPSDYDFPKLRETLLKDLPAHKRHVFL 192 (197)
T ss_pred hhccccccccHHHHHHHHHHHHHHHHHHcCCCCCCEEEEeCCChhhcChHHHHHHHHHHhhHHHHHHHH
Confidence 1122222221 00011224579999998 5789999999999999887765443
No 267
>PRK13768 GTPase; Provisional
Probab=99.12 E-value=4.3e-10 Score=86.48 Aligned_cols=117 Identities=26% Similarity=0.275 Sum_probs=75.0
Q ss_pred EEEEEEeCCCCccc---HHHHHHhhhc-----CCEEEEEEeCCCcccHHHHH--HHHHHHHhCCCCCCCcEEEEEeCCCC
Q 029517 56 SKLVFWDLGGQPGL---RSIWEKYYEE-----AHAVVFVIDAACPSRFEDSK--TALEKVLRNEDLQGAPLLILANKQDL 125 (192)
Q Consensus 56 ~~~~i~D~~G~~~~---~~~~~~~~~~-----~d~ii~v~D~~~~~s~~~~~--~~~~~i~~~~~~~~~piiiv~nK~Dl 125 (192)
..+.+||+||+.+. +..+..+++. ++++++|+|++...+..... .|+....... .++|+++|+||+|+
T Consensus 97 ~~~~~~d~~g~~~~~~~~~~~~~~~~~l~~~~~~~ii~liD~~~~~~~~d~~~~~~l~~~~~~~--~~~~~i~v~nK~D~ 174 (253)
T PRK13768 97 ADYVLVDTPGQMELFAFRESGRKLVERLSGSSKSVVVFLIDAVLAKTPSDFVSLLLLALSVQLR--LGLPQIPVLNKADL 174 (253)
T ss_pred CCEEEEeCCcHHHHHhhhHHHHHHHHHHHhcCCeEEEEEechHHhCCHHHHHHHHHHHHHHHHH--cCCCEEEEEEhHhh
Confidence 37899999997653 3344333333 89999999996544332221 2222111111 47999999999999
Q ss_pred CCCCCHHHHHhHcCc-----------------------cccC--CcceEEEEeeecCCCCHHHHHHHHHHHHHh
Q 029517 126 PDAVSADELARYLDL-----------------------KKLD--ERVCMFEAVSGYDGFGIKESVEWLVEVMER 174 (192)
Q Consensus 126 ~~~~~~~~~~~~~~~-----------------------~~~~--~~~~~~~~~Sa~~~~gi~e~~~~i~~~i~~ 174 (192)
....+.+...+.+.. ..+. ....+++++||+++.|++++.++|.+.+..
T Consensus 175 ~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~vi~iSa~~~~gl~~L~~~I~~~l~~ 248 (253)
T PRK13768 175 LSEEELERILKWLEDPEYLLEELKLEKGLQGLLSLELLRALEETGLPVRVIPVSAKTGEGFDELYAAIQEVFCG 248 (253)
T ss_pred cCchhHHHHHHHHhCHHHHHHHHhcccchHHHHHHHHHHHHHHHCCCCcEEEEECCCCcCHHHHHHHHHHHcCC
Confidence 765444444443331 0000 123588999999999999999999887643
No 268
>PRK00007 elongation factor G; Reviewed
Probab=99.10 E-value=2.7e-09 Score=92.91 Aligned_cols=110 Identities=15% Similarity=0.039 Sum_probs=72.6
Q ss_pred hccccHHHHHHHHhhh--hccCCC------CCC--CCCCCCcceEEEEEEecCEEEEEEeCCCCcccHHHHHHhhhcCCE
Q 029517 13 FTKTEFHTLLEKLKSV--YSNVEG------LPP--DRIVPTVGLNIGRIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHA 82 (192)
Q Consensus 13 ~kst~~~~l~~~~~~~--~~~~~~------~~~--~~~~~T~g~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ 82 (192)
=|||++++|+...-.. ..++.+ ... .....|+......+...+.++.+.||||+.+|.......++.+|+
T Consensus 22 GKsTL~~~ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rg~ti~~~~~~~~~~~~~~~liDTPG~~~f~~ev~~al~~~D~ 101 (693)
T PRK00007 22 GKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTCFWKDHRINIIDTPGHVDFTIEVERSLRVLDG 101 (693)
T ss_pred CHHHHHHHHHHhcCCccccccccCCcccCCCCHHHHhCCCCEeccEEEEEECCeEEEEEeCCCcHHHHHHHHHHHHHcCE
Confidence 3899999998543221 001111 000 122345544455677778999999999999888778888899999
Q ss_pred EEEEEeCCCcccHHHHHHHHHHHHhCCCCCCCcEEEEEeCCCCCC
Q 029517 83 VVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPD 127 (192)
Q Consensus 83 ii~v~D~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~ 127 (192)
+++|+|+...-.-+.. ..+..+.. .++|.++++||+|+.+
T Consensus 102 ~vlVvda~~g~~~qt~-~~~~~~~~----~~~p~iv~vNK~D~~~ 141 (693)
T PRK00007 102 AVAVFDAVGGVEPQSE-TVWRQADK----YKVPRIAFVNKMDRTG 141 (693)
T ss_pred EEEEEECCCCcchhhH-HHHHHHHH----cCCCEEEEEECCCCCC
Confidence 9999998766434332 22233333 3689999999999864
No 269
>PRK09602 translation-associated GTPase; Reviewed
Probab=99.09 E-value=1.4e-09 Score=88.51 Aligned_cols=73 Identities=22% Similarity=0.292 Sum_probs=50.5
Q ss_pred ccccHHHHHHHHhhhhccCCCCCCCCCCCCcceEEEEE-------------------E-ecCEEEEEEeCCCC----ccc
Q 029517 14 TKTEFHTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRI-------------------E-VSNSKLVFWDLGGQ----PGL 69 (192)
Q Consensus 14 kst~~~~l~~~~~~~~~~~~~~~~~~~~~T~g~~~~~~-------------------~-~~~~~~~i~D~~G~----~~~ 69 (192)
|||+||+|.+. ...++++++++..|++|...... + ...+.+++||+||. ...
T Consensus 14 KSTlfn~Lt~~----~~~~~~y~f~t~~p~~g~~~v~~~~~~~r~~~~~~~~~~~~~~~~~~~~i~i~D~aGl~~ga~~g 89 (396)
T PRK09602 14 KSTFFNAATLA----DVEIANYPFTTIDPNVGVAYVRVECPCKELGVKCNPRNGKCIDGTRFIPVELIDVAGLVPGAHEG 89 (396)
T ss_pred HHHHHHHHhCC----cccccCCCCcceeeeeeeeeeccCCchhhhhhhhccccccccCCcceeeEEEEEcCCcCCCccch
Confidence 78888888754 33556777788888888755311 0 12367999999994 223
Q ss_pred HHHHHH---hhhcCCEEEEEEeCC
Q 029517 70 RSIWEK---YYEEAHAVVFVIDAA 90 (192)
Q Consensus 70 ~~~~~~---~~~~~d~ii~v~D~~ 90 (192)
..+... .+++||++++|+|+.
T Consensus 90 ~glg~~fL~~ir~ad~ll~Vvd~~ 113 (396)
T PRK09602 90 RGLGNQFLDDLRQADALIHVVDAS 113 (396)
T ss_pred hhHHHHHHHHHHHCCEEEEEEeCC
Confidence 333333 489999999999996
No 270
>cd01855 YqeH YqeH. YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.
Probab=99.07 E-value=9.9e-10 Score=80.92 Aligned_cols=98 Identities=15% Similarity=0.192 Sum_probs=65.3
Q ss_pred cHHHHHHhhhcCCEEEEEEeCCCcccHHHHHHHHHHHHhCCCCCCCcEEEEEeCCCCCC-CCCHHHHHhHc---CccccC
Q 029517 69 LRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPD-AVSADELARYL---DLKKLD 144 (192)
Q Consensus 69 ~~~~~~~~~~~~d~ii~v~D~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~-~~~~~~~~~~~---~~~~~~ 144 (192)
+...+..+++++|++++|+|+++...- |...+.... .++|+++|+||+|+.. ....+.+..+. ......
T Consensus 24 ~~~~l~~~~~~ad~il~VvD~~~~~~~-----~~~~l~~~~--~~~~~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~ 96 (190)
T cd01855 24 ILNLLSSISPKKALVVHVVDIFDFPGS-----LIPRLRLFG--GNNPVILVGNKIDLLPKDKNLVRIKNWLRAKAAAGLG 96 (190)
T ss_pred HHHHHHhcccCCcEEEEEEECccCCCc-----cchhHHHhc--CCCcEEEEEEchhcCCCCCCHHHHHHHHHHHHHhhcC
Confidence 577889999999999999999875311 111221111 4689999999999864 23333333332 000001
Q ss_pred CcceEEEEeeecCCCCHHHHHHHHHHHHH
Q 029517 145 ERVCMFEAVSGYDGFGIKESVEWLVEVME 173 (192)
Q Consensus 145 ~~~~~~~~~Sa~~~~gi~e~~~~i~~~i~ 173 (192)
.....++++||++|.|+++++++|.+.+.
T Consensus 97 ~~~~~i~~vSA~~~~gi~eL~~~l~~~l~ 125 (190)
T cd01855 97 LKPKDVILISAKKGWGVEELINAIKKLAK 125 (190)
T ss_pred CCcccEEEEECCCCCCHHHHHHHHHHHhh
Confidence 11236899999999999999999988764
No 271
>COG1217 TypA Predicted membrane GTPase involved in stress response [Signal transduction mechanisms]
Probab=99.06 E-value=2.1e-09 Score=86.87 Aligned_cols=120 Identities=18% Similarity=0.235 Sum_probs=87.1
Q ss_pred EEEecCEEEEEEeCCCCcccHHHHHHhhhcCCEEEEEEeCCCcccHHHHHHHHHHHHhCCCCCCCcEEEEEeCCCCCCCC
Q 029517 50 RIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAV 129 (192)
Q Consensus 50 ~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ii~v~D~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~~~ 129 (192)
.+.+++++++|+|||||.+|....+..+.-.|++++++|+....-.+ .+-.+.+.+.. +.+-|+|.||+|.+.+-
T Consensus 62 av~~~~~~INIvDTPGHADFGGEVERvl~MVDgvlLlVDA~EGpMPQ-TrFVlkKAl~~----gL~PIVVvNKiDrp~Ar 136 (603)
T COG1217 62 AVNYNGTRINIVDTPGHADFGGEVERVLSMVDGVLLLVDASEGPMPQ-TRFVLKKALAL----GLKPIVVINKIDRPDAR 136 (603)
T ss_pred eeecCCeEEEEecCCCcCCccchhhhhhhhcceEEEEEEcccCCCCc-hhhhHHHHHHc----CCCcEEEEeCCCCCCCC
Confidence 37788999999999999999999999999999999999998654333 33344444444 45666889999998865
Q ss_pred CHHHHHhHcC----cc-ccCCcceEEEEeeecCCC----------CHHHHHHHHHHHHHh
Q 029517 130 SADELARYLD----LK-KLDERVCMFEAVSGYDGF----------GIKESVEWLVEVMER 174 (192)
Q Consensus 130 ~~~~~~~~~~----~~-~~~~~~~~~~~~Sa~~~~----------gi~e~~~~i~~~i~~ 174 (192)
..+-+.+.+. +. .-....++++..||..|. ++.-+|+.|++.+..
T Consensus 137 p~~Vvd~vfDLf~~L~A~deQLdFPivYAS~~~G~a~~~~~~~~~~m~pLfe~I~~hvp~ 196 (603)
T COG1217 137 PDEVVDEVFDLFVELGATDEQLDFPIVYASARNGTASLDPEDEADDMAPLFETILDHVPA 196 (603)
T ss_pred HHHHHHHHHHHHHHhCCChhhCCCcEEEeeccCceeccCccccccchhHHHHHHHHhCCC
Confidence 4444444333 11 112457899999998764 467778888777654
No 272
>KOG1490 consensus GTP-binding protein CRFG/NOG1 (ODN superfamily) [General function prediction only]
Probab=99.05 E-value=3.3e-10 Score=92.11 Aligned_cols=155 Identities=16% Similarity=0.152 Sum_probs=106.7
Q ss_pred HHHHHhhhhccCCCCCCCCCCCCcceEEEEEEecCEEEEEEeCCCCccc----HHHHHH----hhh-cCCEEEEEEeCC-
Q 029517 21 LLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPGL----RSIWEK----YYE-EAHAVVFVIDAA- 90 (192)
Q Consensus 21 l~~~~~~~~~~~~~~~~~~~~~T~g~~~~~~~~~~~~~~i~D~~G~~~~----~~~~~~----~~~-~~d~ii~v~D~~- 90 (192)
+++-++.+..++++++ .+|-++-+++++++-..+++.||||..+. +...+. .+. --.+++++.|++
T Consensus 184 f~~~vtradvevqpYa----FTTksL~vGH~dykYlrwQViDTPGILD~plEdrN~IEmqsITALAHLraaVLYfmDLSe 259 (620)
T KOG1490|consen 184 FNNKVTRADDEVQPYA----FTTKLLLVGHLDYKYLRWQVIDTPGILDRPEEDRNIIEMQIITALAHLRSAVLYFMDLSE 259 (620)
T ss_pred hcccccccccccCCcc----cccchhhhhhhhhheeeeeecCCccccCcchhhhhHHHHHHHHHHHHhhhhheeeeechh
Confidence 3344444555666655 55666667778887789999999994321 111111 111 135789999997
Q ss_pred -CcccHHHHHHHHHHHHhCCCCCCCcEEEEEeCCCCCCCCCHH----HHHhHcCccccCCcceEEEEeeecCCCCHHHHH
Q 029517 91 -CPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAVSAD----ELARYLDLKKLDERVCMFEAVSGYDGFGIKESV 165 (192)
Q Consensus 91 -~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~~~~~~----~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~e~~ 165 (192)
+..|.++...++..|.... .+.|.|+|+||+|+....+.. ++.+.+. ...+++++++|+.+..||.++.
T Consensus 260 ~CGySva~QvkLfhsIKpLF--aNK~~IlvlNK~D~m~~edL~~~~~~ll~~~~----~~~~v~v~~tS~~~eegVm~Vr 333 (620)
T KOG1490|consen 260 MCGYSVAAQVKLYHSIKPLF--ANKVTILVLNKIDAMRPEDLDQKNQELLQTII----DDGNVKVVQTSCVQEEGVMDVR 333 (620)
T ss_pred hhCCCHHHHHHHHHHhHHHh--cCCceEEEeecccccCccccCHHHHHHHHHHH----hccCceEEEecccchhceeeHH
Confidence 5678888888888887653 689999999999987632222 2223332 2446899999999999999999
Q ss_pred HHHHHHHHhcchhhhhhhhc
Q 029517 166 EWLVEVMERSKRTEMLRARA 185 (192)
Q Consensus 166 ~~i~~~i~~~~~~~~~~~~~ 185 (192)
...++.++..+-.+.+++..
T Consensus 334 t~ACe~LLa~RVE~Klks~~ 353 (620)
T KOG1490|consen 334 TTACEALLAARVEQKLKSES 353 (620)
T ss_pred HHHHHHHHHHHHHHHhhhhh
Confidence 99999998877666665543
No 273
>COG4108 PrfC Peptide chain release factor RF-3 [Translation, ribosomal structure and biogenesis]
Probab=99.04 E-value=2.5e-09 Score=85.87 Aligned_cols=75 Identities=21% Similarity=0.228 Sum_probs=60.1
Q ss_pred EEEEEecCEEEEEEeCCCCcccHHHHHHhhhcCCEEEEEEeCCCcccHHHHHHHHHHHHhCCCCCCCcEEEEEeCCCCCC
Q 029517 48 IGRIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPD 127 (192)
Q Consensus 48 ~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ii~v~D~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~ 127 (192)
+-++++.+..+++.|||||++|+......+..+|.+++|+|+...-.-+.++ +-.+++. .++||+-++||.|...
T Consensus 73 VMqF~Y~~~~iNLLDTPGHeDFSEDTYRtLtAvDsAvMVIDaAKGiE~qT~K--LfeVcrl---R~iPI~TFiNKlDR~~ 147 (528)
T COG4108 73 VMQFDYADCLVNLLDTPGHEDFSEDTYRTLTAVDSAVMVIDAAKGIEPQTLK--LFEVCRL---RDIPIFTFINKLDREG 147 (528)
T ss_pred EEEeccCCeEEeccCCCCccccchhHHHHHHhhheeeEEEecccCccHHHHH--HHHHHhh---cCCceEEEeecccccc
Confidence 4468889999999999999999998888899999999999998664333322 2244444 7899999999999743
No 274
>PRK12289 GTPase RsgA; Reviewed
Probab=99.01 E-value=1.8e-09 Score=86.49 Aligned_cols=90 Identities=19% Similarity=0.135 Sum_probs=65.7
Q ss_pred HHHhhhcCCEEEEEEeCCCcc-cHHHHHHHHHHHHhCCCCCCCcEEEEEeCCCCCCCCCHHHHHhHcCccccCCcceEEE
Q 029517 73 WEKYYEEAHAVVFVIDAACPS-RFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAVSADELARYLDLKKLDERVCMFE 151 (192)
Q Consensus 73 ~~~~~~~~d~ii~v~D~~~~~-s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (192)
....+.++|.+++|+|+.++. ....+..|+..+.. .++|+++|+||+||......+.+.+.+. ..++.++
T Consensus 83 ~R~~~aNvD~vLlV~d~~~p~~~~~~LdR~L~~a~~----~~ip~ILVlNK~DLv~~~~~~~~~~~~~-----~~g~~v~ 153 (352)
T PRK12289 83 DRPPVANADQILLVFALAEPPLDPWQLSRFLVKAES----TGLEIVLCLNKADLVSPTEQQQWQDRLQ-----QWGYQPL 153 (352)
T ss_pred echhhhcCCEEEEEEECCCCCCCHHHHHHHHHHHHH----CCCCEEEEEEchhcCChHHHHHHHHHHH-----hcCCeEE
Confidence 344688999999999998765 45566677665532 4799999999999964322223333332 3467899
Q ss_pred EeeecCCCCHHHHHHHHHHH
Q 029517 152 AVSGYDGFGIKESVEWLVEV 171 (192)
Q Consensus 152 ~~Sa~~~~gi~e~~~~i~~~ 171 (192)
.+||+++.|++++++.+...
T Consensus 154 ~iSA~tg~GI~eL~~~L~~k 173 (352)
T PRK12289 154 FISVETGIGLEALLEQLRNK 173 (352)
T ss_pred EEEcCCCCCHHHHhhhhccc
Confidence 99999999999999988653
No 275
>COG5256 TEF1 Translation elongation factor EF-1alpha (GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.01 E-value=1.6e-09 Score=86.55 Aligned_cols=120 Identities=19% Similarity=0.242 Sum_probs=80.6
Q ss_pred CCCcceEEEEEEecCEEEEEEeCCCCcccHHHHHHhhhcCCEEEEEEeCCCcccHHH-------HHHHHHHHHhCCCCCC
Q 029517 41 VPTVGLNIGRIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFED-------SKTALEKVLRNEDLQG 113 (192)
Q Consensus 41 ~~T~g~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ii~v~D~~~~~s~~~-------~~~~~~~i~~~~~~~~ 113 (192)
.-|+...+..+.-+.+.+.|.|+|||.+|-.....-...+|++|+|+|+.+.+ |+. .++-+ .+.+.. .-
T Consensus 70 GvTi~~~~~~fet~k~~~tIiDaPGHrdFvknmItGasqAD~aVLVV~a~~~e-fE~g~~~~gQtrEH~-~La~tl--Gi 145 (428)
T COG5256 70 GVTIDVAHSKFETDKYNFTIIDAPGHRDFVKNMITGASQADVAVLVVDARDGE-FEAGFGVGGQTREHA-FLARTL--GI 145 (428)
T ss_pred ceEEEEEEEEeecCCceEEEeeCCchHHHHHHhhcchhhccEEEEEEECCCCc-cccccccCCchhHHH-HHHHhc--CC
Confidence 45666767778888889999999999988877766778899999999998653 211 11111 111111 23
Q ss_pred CcEEEEEeCCCCCC--CCCHHHHHhH----cCccccCCcceEEEEeeecCCCCHHHH
Q 029517 114 APLLILANKQDLPD--AVSADELARY----LDLKKLDERVCMFEAVSGYDGFGIKES 164 (192)
Q Consensus 114 ~piiiv~nK~Dl~~--~~~~~~~~~~----~~~~~~~~~~~~~~~~Sa~~~~gi~e~ 164 (192)
..+++++||+|+.+ +...+++... .+.-.+....++|+++||..|.|+.+.
T Consensus 146 ~~lIVavNKMD~v~wde~rf~ei~~~v~~l~k~~G~~~~~v~FIPiSg~~G~Nl~~~ 202 (428)
T COG5256 146 KQLIVAVNKMDLVSWDEERFEEIVSEVSKLLKMVGYNPKDVPFIPISGFKGDNLTKK 202 (428)
T ss_pred ceEEEEEEcccccccCHHHHHHHHHHHHHHHHHcCCCccCCeEEecccccCCccccc
Confidence 57889999999986 2222222222 222223344688999999999998764
No 276
>KOG1191 consensus Mitochondrial GTPase [Translation, ribosomal structure and biogenesis]
Probab=99.01 E-value=5.1e-09 Score=85.16 Aligned_cols=154 Identities=20% Similarity=0.194 Sum_probs=100.7
Q ss_pred hhccccHHHHHHHHhhhhccCCCCCCCCCCCCcceEEEEEEecCEEEEEEeCCCCcc-c--------HHHHHHhhhcCCE
Q 029517 12 IFTKTEFHTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPG-L--------RSIWEKYYEEAHA 82 (192)
Q Consensus 12 ~~kst~~~~l~~~~~~~~~~~~~~~~~~~~~T~g~~~~~~~~~~~~~~i~D~~G~~~-~--------~~~~~~~~~~~d~ 82 (192)
.=|||++|+|.+.-..+++.+++++++-. -..++.+++++.+.||+|... - -.....-++.+|+
T Consensus 279 vGKSSLlNaL~~~drsIVSpv~GTTRDai-------ea~v~~~G~~v~L~DTAGiRe~~~~~iE~~gI~rA~k~~~~adv 351 (531)
T KOG1191|consen 279 VGKSSLLNALSREDRSIVSPVPGTTRDAI-------EAQVTVNGVPVRLSDTAGIREESNDGIEALGIERARKRIERADV 351 (531)
T ss_pred CCHHHHHHHHhcCCceEeCCCCCcchhhh-------eeEeecCCeEEEEEeccccccccCChhHHHhHHHHHHHHhhcCE
Confidence 45899999999999999999999998876 334667899999999999533 1 0112334678999
Q ss_pred EEEEEeC--CCcccHHHHHHHHHHHHhC-----CCCCCCcEEEEEeCCCCCCCCCHHHH--HhHcCccccCCcceE-EEE
Q 029517 83 VVFVIDA--ACPSRFEDSKTALEKVLRN-----EDLQGAPLLILANKQDLPDAVSADEL--ARYLDLKKLDERVCM-FEA 152 (192)
Q Consensus 83 ii~v~D~--~~~~s~~~~~~~~~~i~~~-----~~~~~~piiiv~nK~Dl~~~~~~~~~--~~~~~~~~~~~~~~~-~~~ 152 (192)
+++|+|+ ++-++-..+...+...... ......|++++.||+|+....+.-.. ..+... . ....++ ..+
T Consensus 352 i~~vvda~~~~t~sd~~i~~~l~~~~~g~~~~~~~~~~~~~i~~~nk~D~~s~~~~~~~~~~~~~~~-~-~~~~~~i~~~ 429 (531)
T KOG1191|consen 352 ILLVVDAEESDTESDLKIARILETEGVGLVVIVNKMEKQRIILVANKSDLVSKIPEMTKIPVVYPSA-E-GRSVFPIVVE 429 (531)
T ss_pred EEEEecccccccccchHHHHHHHHhccceEEEeccccccceEEEechhhccCccccccCCceecccc-c-cCcccceEEE
Confidence 9999999 3333222222333222211 11135799999999998763211111 111110 0 011333 455
Q ss_pred eeecCCCCHHHHHHHHHHHHHh
Q 029517 153 VSGYDGFGIKESVEWLVEVMER 174 (192)
Q Consensus 153 ~Sa~~~~gi~e~~~~i~~~i~~ 174 (192)
+|+++++|++++.+.+.+.+..
T Consensus 430 vs~~tkeg~~~L~~all~~~~~ 451 (531)
T KOG1191|consen 430 VSCTTKEGCERLSTALLNIVER 451 (531)
T ss_pred eeechhhhHHHHHHHHHHHHHH
Confidence 9999999999999999887764
No 277
>COG3276 SelB Selenocysteine-specific translation elongation factor [Translation, ribosomal structure and biogenesis]
Probab=98.99 E-value=4.4e-09 Score=84.60 Aligned_cols=151 Identities=16% Similarity=0.082 Sum_probs=100.1
Q ss_pred hccccHHHHHHHHhhhhccCCCCCCCCCCCCcceEEEEEEecCEEEEEEeCCCCcccHHHHHHhhhcCCEEEEEEeCCCc
Q 029517 13 FTKTEFHTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACP 92 (192)
Q Consensus 13 ~kst~~~~l~~~~~~~~~~~~~~~~~~~~~T~g~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ii~v~D~~~~ 92 (192)
-|||++.++ ++......+... .-..|+.+.++....++..+.|+|+||++++-.....-+...|.+++|+|+.+.
T Consensus 12 gkT~L~~al----tg~~~d~l~Eek-KRG~TiDlg~~y~~~~d~~~~fIDvpgh~~~i~~miag~~~~d~alLvV~~deG 86 (447)
T COG3276 12 GKTTLLKAL----TGGVTDRLPEEK-KRGITIDLGFYYRKLEDGVMGFIDVPGHPDFISNLLAGLGGIDYALLVVAADEG 86 (447)
T ss_pred cchhhhhhh----cccccccchhhh-hcCceEeeeeEeccCCCCceEEeeCCCcHHHHHHHHhhhcCCceEEEEEeCccC
Confidence 355444444 443333333333 337788888888887778999999999999888777777889999999999654
Q ss_pred ccHHHHHHHHHHHHhCCCCCCCcEEEEEeCCCCCCCCCHHHHHhHcCccccCCcceEEEEeeecCCCCHHHHHHHHHHHH
Q 029517 93 SRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAVSADELARYLDLKKLDERVCMFEAVSGYDGFGIKESVEWLVEVM 172 (192)
Q Consensus 93 ~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~e~~~~i~~~i 172 (192)
-..+.... ..+++.. .....++|+||+|+.+....++..+.+. ........+++.+|+++|+||+++.+.|.+..
T Consensus 87 l~~qtgEh--L~iLdll--gi~~giivltk~D~~d~~r~e~~i~~Il-~~l~l~~~~i~~~s~~~g~GI~~Lk~~l~~L~ 161 (447)
T COG3276 87 LMAQTGEH--LLILDLL--GIKNGIIVLTKADRVDEARIEQKIKQIL-ADLSLANAKIFKTSAKTGRGIEELKNELIDLL 161 (447)
T ss_pred cchhhHHH--HHHHHhc--CCCceEEEEeccccccHHHHHHHHHHHH-hhcccccccccccccccCCCHHHHHHHHHHhh
Confidence 33332111 1223321 2346699999999886333333222222 11113466789999999999999999999877
Q ss_pred H
Q 029517 173 E 173 (192)
Q Consensus 173 ~ 173 (192)
.
T Consensus 162 ~ 162 (447)
T COG3276 162 E 162 (447)
T ss_pred h
Confidence 4
No 278
>COG2895 CysN GTPases - Sulfate adenylate transferase subunit 1 [Inorganic ion transport and metabolism]
Probab=98.98 E-value=1.4e-09 Score=85.16 Aligned_cols=116 Identities=16% Similarity=0.167 Sum_probs=79.5
Q ss_pred CCCCcceEEEEEEecCEEEEEEeCCCCcccHHHHHHhhhcCCEEEEEEeCCCcccHHHH--HHHHHHHHhCCCCCCCcEE
Q 029517 40 IVPTVGLNIGRIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDS--KTALEKVLRNEDLQGAPLL 117 (192)
Q Consensus 40 ~~~T~g~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ii~v~D~~~~~s~~~~--~~~~~~i~~~~~~~~~pii 117 (192)
..-||.+.|..|.-.+.++.|-|||||+.|......-...||++|+++|+...- ++.. ..++..++. -..++
T Consensus 70 QGITIDVAYRyFsT~KRkFIiADTPGHeQYTRNMaTGASTadlAIlLVDAR~Gv-l~QTrRHs~I~sLLG-----Irhvv 143 (431)
T COG2895 70 QGITIDVAYRYFSTEKRKFIIADTPGHEQYTRNMATGASTADLAILLVDARKGV-LEQTRRHSFIASLLG-----IRHVV 143 (431)
T ss_pred cCceEEEEeeecccccceEEEecCCcHHHHhhhhhcccccccEEEEEEecchhh-HHHhHHHHHHHHHhC-----CcEEE
Confidence 356777777788888999999999999999877766667899999999996431 2221 123333322 35788
Q ss_pred EEEeCCCCCC--CCCHHH----HHhHcCccccCCcceEEEEeeecCCCCHHH
Q 029517 118 ILANKQDLPD--AVSADE----LARYLDLKKLDERVCMFEAVSGYDGFGIKE 163 (192)
Q Consensus 118 iv~nK~Dl~~--~~~~~~----~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~e 163 (192)
+..||+||.+ +...++ ...++. .+......++++||..|+||-.
T Consensus 144 vAVNKmDLvdy~e~~F~~I~~dy~~fa~--~L~~~~~~~IPiSAl~GDNV~~ 193 (431)
T COG2895 144 VAVNKMDLVDYSEEVFEAIVADYLAFAA--QLGLKDVRFIPISALLGDNVVS 193 (431)
T ss_pred EEEeeecccccCHHHHHHHHHHHHHHHH--HcCCCcceEEechhccCCcccc
Confidence 9999999987 111222 222222 1223456899999999999864
No 279
>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....
Probab=98.98 E-value=7.2e-09 Score=70.15 Aligned_cols=96 Identities=23% Similarity=0.317 Sum_probs=59.9
Q ss_pred ccccHHHHHHHHhhhhccCCCCCCCCCCCCcceEEEEEEecCEEEEEEeCCCCccc---------HHHHHHhhhcCCEEE
Q 029517 14 TKTEFHTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPGL---------RSIWEKYYEEAHAVV 84 (192)
Q Consensus 14 kst~~~~l~~~~~~~~~~~~~~~~~~~~~T~g~~~~~~~~~~~~~~i~D~~G~~~~---------~~~~~~~~~~~d~ii 84 (192)
|||++|+|+++.... +.+. ...|....+..+......+.++||||...- .......+..+|+++
T Consensus 12 KSTlin~l~~~~~~~---~~~~----~~~T~~~~~~~~~~~~~~~~~vDtpG~~~~~~~~~~~~~~~~~~~~~~~~d~ii 84 (116)
T PF01926_consen 12 KSTLINALTGKKLAK---VSNI----PGTTRDPVYGQFEYNNKKFILVDTPGINDGESQDNDGKEIRKFLEQISKSDLII 84 (116)
T ss_dssp HHHHHHHHHTSTSSE---ESSS----TTSSSSEEEEEEEETTEEEEEEESSSCSSSSHHHHHHHHHHHHHHHHCTESEEE
T ss_pred HHHHHHHHhcccccc---cccc----ccceeeeeeeeeeeceeeEEEEeCCCCcccchhhHHHHHHHHHHHHHHHCCEEE
Confidence 899999998643221 2222 234444444556667888899999995321 112333457899999
Q ss_pred EEEeCCCcccHHHHHHHHHHHHhCCCCCCCcEEEEEeC
Q 029517 85 FVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANK 122 (192)
Q Consensus 85 ~v~D~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK 122 (192)
+|+|+.++.. +.....+..+. .+.|+++|+||
T Consensus 85 ~vv~~~~~~~-~~~~~~~~~l~-----~~~~~i~v~NK 116 (116)
T PF01926_consen 85 YVVDASNPIT-EDDKNILRELK-----NKKPIILVLNK 116 (116)
T ss_dssp EEEETTSHSH-HHHHHHHHHHH-----TTSEEEEEEES
T ss_pred EEEECCCCCC-HHHHHHHHHHh-----cCCCEEEEEcC
Confidence 9999776321 22233333342 47999999998
No 280
>cd01852 AIG1 AIG1 (avrRpt2-induced gene 1). This represents Arabidoposis protein AIG1 that appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 exhibits RPS2- and avrRpt1-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2. This subfamily also includes IAN-4 protein, which has GTP-binding activity and shares sequence homology with a novel family of putative GTP-binding proteins: the immuno-associated nucleotide (IAN) family. The evolutionary conservation of the IAN family provides a unique example of a plant pathogen response gene conserved in animals. The IAN/IMAP subfamily has been proposed to regulate apoptosis in vertebrates and angiosperm plants, particularly in relation to cancer, diabetes, and infections. The human IAN genes were renamed GIMAP (GTPase of the immunity associated proteins).
Probab=98.98 E-value=8.4e-09 Score=76.38 Aligned_cols=149 Identities=12% Similarity=0.040 Sum_probs=86.4
Q ss_pred ccccHHHHHHHHhhhhccCCCCCCCCCCCCcceEEEEEEecCEEEEEEeCCCCccc-------HHHH----HHhhhcCCE
Q 029517 14 TKTEFHTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPGL-------RSIW----EKYYEEAHA 82 (192)
Q Consensus 14 kst~~~~l~~~~~~~~~~~~~~~~~~~~~T~g~~~~~~~~~~~~~~i~D~~G~~~~-------~~~~----~~~~~~~d~ 82 (192)
|||++|+|+++-... ........|..+........+..+.++||||..+. .... .....+.++
T Consensus 13 KSsl~N~ilg~~~~~------~~~~~~~~T~~~~~~~~~~~~~~i~viDTPG~~d~~~~~~~~~~~i~~~~~~~~~g~~~ 86 (196)
T cd01852 13 KSATGNTILGREVFE------SKLSASSVTKTCQKESAVWDGRRVNVIDTPGLFDTSVSPEQLSKEIVRCLSLSAPGPHA 86 (196)
T ss_pred HHHHHHHhhCCCccc------cccCCCCcccccceeeEEECCeEEEEEECcCCCCccCChHHHHHHHHHHHHhcCCCCEE
Confidence 899999999764321 11112234555555555557789999999995432 1111 112356899
Q ss_pred EEEEEeCCCcc-cHHHHHHHHHHHHhCCCCCCCcEEEEEeCCCCCCCCCHHH--------HHhHcCccccCCcceEEEEe
Q 029517 83 VVFVIDAACPS-RFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAVSADE--------LARYLDLKKLDERVCMFEAV 153 (192)
Q Consensus 83 ii~v~D~~~~~-s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~ 153 (192)
+++|+|+.... ....+.+++..+... ..-.+++++.|+.|.....+.++ +...++ .++-.++..
T Consensus 87 illVi~~~~~t~~d~~~l~~l~~~fg~--~~~~~~ivv~T~~d~l~~~~~~~~~~~~~~~l~~l~~-----~c~~r~~~f 159 (196)
T cd01852 87 FLLVVPLGRFTEEEEQAVETLQELFGE--KVLDHTIVLFTRGDDLEGGTLEDYLENSCEALKRLLE-----KCGGRYVAF 159 (196)
T ss_pred EEEEEECCCcCHHHHHHHHHHHHHhCh--HhHhcEEEEEECccccCCCcHHHHHHhccHHHHHHHH-----HhCCeEEEE
Confidence 99999987622 122233333332221 12358899999999765332222 222222 223344444
Q ss_pred e-----ecCCCCHHHHHHHHHHHHHhc
Q 029517 154 S-----GYDGFGIKESVEWLVEVMERS 175 (192)
Q Consensus 154 S-----a~~~~gi~e~~~~i~~~i~~~ 175 (192)
+ +..+.++.++++.+.+.+..+
T Consensus 160 ~~~~~~~~~~~q~~~Ll~~i~~~~~~~ 186 (196)
T cd01852 160 NNKAKGEEQEQQVKELLAKVESMVKEN 186 (196)
T ss_pred eCCCCcchhHHHHHHHHHHHHHHHHhc
Confidence 3 566788999999998887764
No 281
>cd01854 YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.
Probab=98.97 E-value=2.5e-09 Score=83.75 Aligned_cols=88 Identities=20% Similarity=0.091 Sum_probs=66.0
Q ss_pred HHhhhcCCEEEEEEeCCCcc-cHHHHHHHHHHHHhCCCCCCCcEEEEEeCCCCCCCCCHHHHHhHcCccccCCcceEEEE
Q 029517 74 EKYYEEAHAVVFVIDAACPS-RFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAVSADELARYLDLKKLDERVCMFEA 152 (192)
Q Consensus 74 ~~~~~~~d~ii~v~D~~~~~-s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (192)
+..+.++|.+++|+|+.++. ++..+..|+..+.. .++|+++|+||+|+.............. ..+++++.
T Consensus 73 ~~i~anvD~vllV~d~~~p~~s~~~ldr~L~~~~~----~~ip~iIVlNK~DL~~~~~~~~~~~~~~-----~~g~~v~~ 143 (287)
T cd01854 73 QVIAANVDQLVIVVSLNEPFFNPRLLDRYLVAAEA----AGIEPVIVLTKADLLDDEEEELELVEAL-----ALGYPVLA 143 (287)
T ss_pred eeEEEeCCEEEEEEEcCCCCCCHHHHHHHHHHHHH----cCCCEEEEEEHHHCCChHHHHHHHHHHH-----hCCCeEEE
Confidence 33578999999999999887 88888888776654 3689999999999965311111122122 34679999
Q ss_pred eeecCCCCHHHHHHHHHH
Q 029517 153 VSGYDGFGIKESVEWLVE 170 (192)
Q Consensus 153 ~Sa~~~~gi~e~~~~i~~ 170 (192)
+||+++.|+++++.++..
T Consensus 144 vSA~~g~gi~~L~~~L~~ 161 (287)
T cd01854 144 VSAKTGEGLDELREYLKG 161 (287)
T ss_pred EECCCCccHHHHHhhhcc
Confidence 999999999999988764
No 282
>TIGR00490 aEF-2 translation elongation factor aEF-2. This model represents archaeal elongation factor 2, a protein more similar to eukaryotic EF-2 than to bacterial EF-G, both in sequence similarity and in sharing with eukaryotes the property of having a diphthamide (modified His) residue at a conserved position. The diphthamide can be ADP-ribosylated by diphtheria toxin in the presence of NAD.
Probab=98.90 E-value=9.7e-09 Score=89.76 Aligned_cols=83 Identities=14% Similarity=0.062 Sum_probs=59.4
Q ss_pred CCCCcceEEEE----EEecCEEEEEEeCCCCcccHHHHHHhhhcCCEEEEEEeCCCcccHHHHHHHHHHHHhCCCCCCCc
Q 029517 40 IVPTVGLNIGR----IEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAP 115 (192)
Q Consensus 40 ~~~T~g~~~~~----~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ii~v~D~~~~~s~~~~~~~~~~i~~~~~~~~~p 115 (192)
+..|++..... +...++++.+|||||+.+|.......++.+|++|+|+|+......+.. ..+..... .+.|
T Consensus 66 rg~Ti~~~~~~~~~~~~~~~~~i~liDTPG~~~f~~~~~~al~~aD~~llVvda~~g~~~~t~-~~~~~~~~----~~~p 140 (720)
T TIGR00490 66 RGITINAANVSMVHEYEGNEYLINLIDTPGHVDFGGDVTRAMRAVDGAIVVVCAVEGVMPQTE-TVLRQALK----ENVK 140 (720)
T ss_pred hcchhhcccceeEEeecCCceEEEEEeCCCccccHHHHHHHHHhcCEEEEEEecCCCCCccHH-HHHHHHHH----cCCC
Confidence 34566654433 456688999999999999988888899999999999999765322221 22222222 3578
Q ss_pred EEEEEeCCCCCC
Q 029517 116 LLILANKQDLPD 127 (192)
Q Consensus 116 iiiv~nK~Dl~~ 127 (192)
.++++||+|...
T Consensus 141 ~ivviNKiD~~~ 152 (720)
T TIGR00490 141 PVLFINKVDRLI 152 (720)
T ss_pred EEEEEEChhccc
Confidence 889999999864
No 283
>PF00503 G-alpha: G-protein alpha subunit; InterPro: IPR001019 Guanine nucleotide binding proteins (G proteins) are membrane-associated, heterotrimeric proteins composed of three subunits: alpha (IPR001019 from INTERPRO), beta (IPR001632 from INTERPRO) and gamma (IPR001770 from INTERPRO) []. G proteins and their receptors (GPCRs) form one of the most prevalent signalling systems in mammalian cells, regulating systems as diverse as sensory perception, cell growth and hormonal regulation []. At the cell surface, the binding of ligands such as hormones and neurotransmitters to a GPCR activates the receptor by causing a conformational change, which in turn activates the bound G protein on the intracellular-side of the membrane. The activated receptor promotes the exchange of bound GDP for GTP on the G protein alpha subunit. GTP binding changes the conformation of switch regions within the alpha subunit, which allows the bound trimeric G protein (inactive) to be released from the receptor, and to dissociate into active alpha subunit (GTP-bound) and beta/gamma dimer. The alpha subunit and the beta/gamma dimer go on to activate distinct downstream effectors, such as adenylyl cyclase, phosphodiesterases, phospholipase C, and ion channels. These effectors in turn regulate the intracellular concentrations of secondary messengers, such as cAMP, diacylglycerol, sodium or calcium cations, which ultimately lead to a physiological response, usually via the downstream regulation of gene transcription. The cycle is completed by the hydrolysis of alpha subunit-bound GTP to GDP, resulting in the re-association of the alpha and beta/gamma subunits and their binding to the receptor, which terminates the signal []. The length of the G protein signal is controlled by the duration of the GTP-bound alpha subunit, which can be regulated by RGS (regulator of G protein signalling) proteins (IPR000342 from INTERPRO) or by covalent modifications []. There are several isoforms of each subunit, many of which have splice variants, which together can make up hundreds of combinations of G proteins. The specific combination of subunits in heterotrimeric G proteins affects not only which receptor it can bind to, but also which downstream target is affected, providing the means to target specific physiological processes in response to specific external stimuli [, ]. G proteins carry lipid modifications on one or more of their subunits to target them to the plasma membrane and to contribute to protein interactions. This family consists of the G protein alpha subunit, which acts as a weak GTPase. G protein classes are defined based on the sequence and function of their alpha subunits, which in mammals fall into four main categories: G(S)alpha, G(Q)alpha, G(I)alpha and G(12)alpha; there are also fungal and plant classes of alpha subunits. The alpha subunit consists of two domains: a GTP-binding domain and a helical insertion domain (IPR011025 from INTERPRO). The GTP-binding domain is homologous to Ras-like small GTPases, and includes switch regions I and II, which change conformation during activation. The switch regions are loops of alpha-helices with conformations sensitive to guanine nucleotides. The helical insertion domain is inserted into the GTP-binding domain before switch region I and is unique to heterotrimeric G proteins. This helical insertion domain functions to sequester the guanine nucleotide at the interface with the GTP-binding domain and must be displaced to enable nucleotide dissociation.; GO: 0004871 signal transducer activity, 0019001 guanyl nucleotide binding, 0007186 G-protein coupled receptor protein signaling pathway; PDB: 3QI2_B 3QE0_A 2IK8_A 2OM2_A 2GTP_B 2XNS_B 3ONW_B 1KJY_A 2EBC_A 1Y3A_B ....
Probab=98.87 E-value=7.6e-09 Score=84.43 Aligned_cols=132 Identities=22% Similarity=0.378 Sum_probs=97.7
Q ss_pred CCCCcceEEEEEEe-cCEEEEEEeCCCCcccHHHHHHhhhcCCEEEEEEeCCC----------cccHHHHHHHHHHHHhC
Q 029517 40 IVPTVGLNIGRIEV-SNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAAC----------PSRFEDSKTALEKVLRN 108 (192)
Q Consensus 40 ~~~T~g~~~~~~~~-~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ii~v~D~~~----------~~s~~~~~~~~~~i~~~ 108 (192)
..+|.|+....+.. .+..+.++|++|+..-+..|..++.+++++|||+++++ ...+.+....+..+...
T Consensus 219 r~~T~Gi~e~~f~~~~~~~~~~~DvGGqr~eRkKW~~~F~~v~~vif~vsls~ydq~~~ed~~~nrl~esl~lF~~i~~~ 298 (389)
T PF00503_consen 219 RVKTTGITEIDFNFSGSRKFRLIDVGGQRSERKKWIHCFEDVTAVIFVVSLSEYDQTLYEDPNTNRLHESLNLFESICNN 298 (389)
T ss_dssp ----SSEEEEEEEE-TTEEEEEEEETSSGGGGGGGGGGGTTESEEEEEEEGGGGGSBESSSTTSBHHHHHHHHHHHHHTS
T ss_pred cCCCCCeeEEEEEeecccccceecCCCCchhhhhHHHHhccccEEEEeecccchhhhhcccchHHHHHHHHHHHHHHHhC
Confidence 46889998888998 89999999999999888999999999999999998752 24577778888888887
Q ss_pred CCCCCCcEEEEEeCCCCCC------------------C--CCHHHHHhHcCcc-----ccCC--cceEEEEeeecCCCCH
Q 029517 109 EDLQGAPLLILANKQDLPD------------------A--VSADELARYLDLK-----KLDE--RVCMFEAVSGYDGFGI 161 (192)
Q Consensus 109 ~~~~~~piiiv~nK~Dl~~------------------~--~~~~~~~~~~~~~-----~~~~--~~~~~~~~Sa~~~~gi 161 (192)
....+.|+++++||.|+.. . .+.+.+.+++... .... +.+.++.++|.+..++
T Consensus 299 ~~~~~~~iil~lnK~D~f~~Kl~~~~~l~~~fp~y~g~~~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~h~t~a~d~~~~ 378 (389)
T PF00503_consen 299 PWFKNTPIILFLNKIDLFEEKLKKGPKLSKYFPDYTGDRPNDVDSAIKFIKNKFLRLNRNNSPSRRIYVHFTCATDTENI 378 (389)
T ss_dssp GGGTTSEEEEEEE-HHHHHHHTTTSSCGGGTSTTGGSH-TSSHHHHHHHHHHHHHCTHSTTTTCS-EEEEEESTTSHHHH
T ss_pred cccccCceEEeeecHHHHHHHccCCCchHhhCCCCCCCcccCHHHHHHHHHHHHHHhccCCCCCcceEEEEeeecccHHH
Confidence 7777899999999999721 0 2334444444311 1111 5667778999998889
Q ss_pred HHHHHHHHHH
Q 029517 162 KESVEWLVEV 171 (192)
Q Consensus 162 ~e~~~~i~~~ 171 (192)
..+|+.+.+.
T Consensus 379 ~~v~~~v~~~ 388 (389)
T PF00503_consen 379 RKVFNAVKDI 388 (389)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHhcCc
Confidence 9998887764
No 284
>PRK00098 GTPase RsgA; Reviewed
Probab=98.87 E-value=6.1e-09 Score=81.99 Aligned_cols=86 Identities=24% Similarity=0.183 Sum_probs=61.3
Q ss_pred hhhcCCEEEEEEeCCCcccHHH-HHHHHHHHHhCCCCCCCcEEEEEeCCCCCCC-CCHHHHHhHcCccccCCcceEEEEe
Q 029517 76 YYEEAHAVVFVIDAACPSRFED-SKTALEKVLRNEDLQGAPLLILANKQDLPDA-VSADELARYLDLKKLDERVCMFEAV 153 (192)
Q Consensus 76 ~~~~~d~ii~v~D~~~~~s~~~-~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (192)
...++|++++|+|++++..... +..|+..+.. .++|+++|+||+|+.+. ...+++.+... ..+++++++
T Consensus 77 iaaniD~vllV~d~~~p~~~~~~idr~L~~~~~----~~ip~iIVlNK~DL~~~~~~~~~~~~~~~-----~~g~~v~~v 147 (298)
T PRK00098 77 IAANVDQAVLVFAAKEPDFSTDLLDRFLVLAEA----NGIKPIIVLNKIDLLDDLEEARELLALYR-----AIGYDVLEL 147 (298)
T ss_pred eeecCCEEEEEEECCCCCCCHHHHHHHHHHHHH----CCCCEEEEEEhHHcCCCHHHHHHHHHHHH-----HCCCeEEEE
Confidence 3589999999999987765443 4566655433 47899999999999631 11122233332 346789999
Q ss_pred eecCCCCHHHHHHHHHH
Q 029517 154 SGYDGFGIKESVEWLVE 170 (192)
Q Consensus 154 Sa~~~~gi~e~~~~i~~ 170 (192)
||+++.|++++++.+..
T Consensus 148 SA~~g~gi~~L~~~l~g 164 (298)
T PRK00098 148 SAKEGEGLDELKPLLAG 164 (298)
T ss_pred eCCCCccHHHHHhhccC
Confidence 99999999999988753
No 285
>PRK12288 GTPase RsgA; Reviewed
Probab=98.86 E-value=2.2e-08 Score=80.18 Aligned_cols=89 Identities=21% Similarity=0.095 Sum_probs=65.9
Q ss_pred hhcCCEEEEEEeCCCcccHHHHHHHHHHHHhCCCCCCCcEEEEEeCCCCCCCCCHHHHHhHcCccccCCcceEEEEeeec
Q 029517 77 YEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAVSADELARYLDLKKLDERVCMFEAVSGY 156 (192)
Q Consensus 77 ~~~~d~ii~v~D~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 156 (192)
..++|.+++|+++.+..++..+..|+..+. . .++|.++|+||+|+......+...+... .....+++++++||+
T Consensus 118 aANvD~vlIV~s~~p~~s~~~Ldr~L~~a~-~---~~i~~VIVlNK~DL~~~~~~~~~~~~~~--~y~~~g~~v~~vSA~ 191 (347)
T PRK12288 118 AANIDQIVIVSAVLPELSLNIIDRYLVACE-T---LGIEPLIVLNKIDLLDDEGRAFVNEQLD--IYRNIGYRVLMVSSH 191 (347)
T ss_pred EEEccEEEEEEeCCCCCCHHHHHHHHHHHH-h---cCCCEEEEEECccCCCcHHHHHHHHHHH--HHHhCCCeEEEEeCC
Confidence 356999999999988889999999987543 2 4689999999999975322222222221 011346799999999
Q ss_pred CCCCHHHHHHHHHHH
Q 029517 157 DGFGIKESVEWLVEV 171 (192)
Q Consensus 157 ~~~gi~e~~~~i~~~ 171 (192)
++.|+++++++|...
T Consensus 192 tg~GideL~~~L~~k 206 (347)
T PRK12288 192 TGEGLEELEAALTGR 206 (347)
T ss_pred CCcCHHHHHHHHhhC
Confidence 999999999998753
No 286
>cd01856 YlqF YlqF. Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.
Probab=98.85 E-value=8.7e-09 Score=74.66 Aligned_cols=98 Identities=18% Similarity=0.219 Sum_probs=65.2
Q ss_pred CCC-cccHHHHHHhhhcCCEEEEEEeCCCcccHHHHHHHHHHHHhCCCCCCCcEEEEEeCCCCCCCCCHHHHHhHcCccc
Q 029517 64 GGQ-PGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAVSADELARYLDLKK 142 (192)
Q Consensus 64 ~G~-~~~~~~~~~~~~~~d~ii~v~D~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~ 142 (192)
||+ .+........++++|.+++|+|++++..-.. ......+ .+.|.++|+||+|+.......+..++..
T Consensus 3 ~~~~~~~~~~~~~~i~~aD~il~v~D~~~~~~~~~-~~i~~~~------~~k~~ilVlNK~Dl~~~~~~~~~~~~~~--- 72 (171)
T cd01856 3 PGHMAKALRQIKEKLKLVDLVIEVRDARIPLSSRN-PLLEKIL------GNKPRIIVLNKADLADPKKTKKWLKYFE--- 72 (171)
T ss_pred chHHHHHHHHHHHHHhhCCEEEEEeeccCccCcCC-hhhHhHh------cCCCEEEEEehhhcCChHHHHHHHHHHH---
Confidence 444 4555666778899999999999986543211 1111111 3579999999999864211122223322
Q ss_pred cCCcceEEEEeeecCCCCHHHHHHHHHHHHH
Q 029517 143 LDERVCMFEAVSGYDGFGIKESVEWLVEVME 173 (192)
Q Consensus 143 ~~~~~~~~~~~Sa~~~~gi~e~~~~i~~~i~ 173 (192)
.....++.+||+++.|++++.+.+...+.
T Consensus 73 --~~~~~vi~iSa~~~~gi~~L~~~l~~~l~ 101 (171)
T cd01856 73 --SKGEKVLFVNAKSGKGVKKLLKAAKKLLK 101 (171)
T ss_pred --hcCCeEEEEECCCcccHHHHHHHHHHHHH
Confidence 22456889999999999999999988764
No 287
>COG5257 GCD11 Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=98.84 E-value=1.4e-08 Score=78.80 Aligned_cols=116 Identities=15% Similarity=0.137 Sum_probs=82.4
Q ss_pred EEEEEEeCCCCcccHHHHHHhhhcCCEEEEEEeCCCcccHHHHHHHHHHHHhCCCCCCCcEEEEEeCCCCCC----CCCH
Q 029517 56 SKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPD----AVSA 131 (192)
Q Consensus 56 ~~~~i~D~~G~~~~~~~~~~~~~~~d~ii~v~D~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~----~~~~ 131 (192)
.++.|+|.|||+-.......--.-.|++++|+++..+..--...+-+..+.-. .-..++++-||+|+.. ...+
T Consensus 86 R~VSfVDaPGHe~LMATMLsGAAlMDgAlLvIaANEpcPQPQT~EHl~AleIi---gik~iiIvQNKIDlV~~E~AlE~y 162 (415)
T COG5257 86 RRVSFVDAPGHETLMATMLSGAALMDGALLVIAANEPCPQPQTREHLMALEII---GIKNIIIVQNKIDLVSRERALENY 162 (415)
T ss_pred EEEEEeeCCchHHHHHHHhcchhhhcceEEEEecCCCCCCCchHHHHHHHhhh---ccceEEEEecccceecHHHHHHHH
Confidence 57999999999865443333233469999999987554333333333333222 2367999999999976 3567
Q ss_pred HHHHhHcCccccCCcceEEEEeeecCCCCHHHHHHHHHHHHHhcc
Q 029517 132 DELARYLDLKKLDERVCMFEAVSGYDGFGIKESVEWLVEVMERSK 176 (192)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~e~~~~i~~~i~~~~ 176 (192)
+++.++.+-.. .-+.+++++||..+.||+-+++.|.+.+....
T Consensus 163 ~qIk~FvkGt~--Ae~aPIIPiSA~~~~NIDal~e~i~~~IptP~ 205 (415)
T COG5257 163 EQIKEFVKGTV--AENAPIIPISAQHKANIDALIEAIEKYIPTPE 205 (415)
T ss_pred HHHHHHhcccc--cCCCceeeehhhhccCHHHHHHHHHHhCCCCc
Confidence 78888887322 23678999999999999999999999887543
No 288
>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]
Probab=98.84 E-value=8.1e-09 Score=85.46 Aligned_cols=117 Identities=15% Similarity=0.084 Sum_probs=86.0
Q ss_pred cCEEEEEEeCCCCcccHHHHHHhhhcCCEEEEEEeCCCcccHHHHHH-HHHHHHhCC-CCCCCcEEEEEeCCCCCCCCCH
Q 029517 54 SNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKT-ALEKVLRNE-DLQGAPLLILANKQDLPDAVSA 131 (192)
Q Consensus 54 ~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ii~v~D~~~~~s~~~~~~-~~~~i~~~~-~~~~~piiiv~nK~Dl~~~~~~ 131 (192)
..+...|.|++..+.-+.....-++++|++.++|+++++++++++.. |+-.+.+.. +-...|+|+||||+|+......
T Consensus 54 e~vpt~ivD~ss~~~~~~~l~~EirkA~vi~lvyavd~~~T~D~ist~WLPlir~~~~~~~~~PVILvGNK~d~~~~~~~ 133 (625)
T KOG1707|consen 54 ENVPTSIVDTSSDSDDRLCLRKEIRKADVICLVYAVDDESTVDRISTKWLPLIRQLFGDYHETPVILVGNKSDNGDNENN 133 (625)
T ss_pred CcCceEEEecccccchhHHHHHHHhhcCEEEEEEecCChHHhhhhhhhhhhhhhcccCCCccCCEEEEeeccCCcccccc
Confidence 45678999999877666666778899999999999999999998854 666666543 2246899999999998763222
Q ss_pred --HH-HHhHcCccccCCc-ceEEEEeeecCCCCHHHHHHHHHHHHHh
Q 029517 132 --DE-LARYLDLKKLDER-VCMFEAVSGYDGFGIKESVEWLVEVMER 174 (192)
Q Consensus 132 --~~-~~~~~~~~~~~~~-~~~~~~~Sa~~~~gi~e~~~~i~~~i~~ 174 (192)
+. ...... ... --.+++|||++-.++.|+|....+++..
T Consensus 134 s~e~~~~pim~----~f~EiEtciecSA~~~~n~~e~fYyaqKaVih 176 (625)
T KOG1707|consen 134 SDEVNTLPIMI----AFAEIETCIECSALTLANVSELFYYAQKAVIH 176 (625)
T ss_pred chhHHHHHHHH----HhHHHHHHHhhhhhhhhhhHhhhhhhhheeec
Confidence 22 111111 011 2247899999999999999998887654
No 289
>cd01850 CDC_Septin CDC/Septin. Septins are a conserved family of GTP-binding proteins associated with diverse processes in dividing and non-dividing cells. They were first discovered in the budding yeast S. cerevisiae as a set of genes (CDC3, CDC10, CDC11 and CDC12) required for normal bud morphology. Septins are also present in metazoan cells, where they are required for cytokinesis in some systems, and implicated in a variety of other processes involving organization of the cell cortex and exocytosis. In humans, 12 septin genes generate dozens of polypeptides, many of which comprise heterooligomeric complexes. Since septin mutants are commonly defective in cytokinesis and formation of the neck formation of the neck filaments/septin rings, septins have been considered to be the primary constituents of the neck filaments. Septins belong to the GTPase superfamily for their conserved GTPase motifs and enzymatic activities.
Probab=98.82 E-value=1e-08 Score=79.84 Aligned_cols=132 Identities=14% Similarity=0.147 Sum_probs=70.2
Q ss_pred hccccHHHHHHHHhhhhccCCCCCCCCCCCCcceEEEE--EEec--CEEEEEEeCCCCcccHH---HHH-----------
Q 029517 13 FTKTEFHTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGR--IEVS--NSKLVFWDLGGQPGLRS---IWE----------- 74 (192)
Q Consensus 13 ~kst~~~~l~~~~~~~~~~~~~~~~~~~~~T~g~~~~~--~~~~--~~~~~i~D~~G~~~~~~---~~~----------- 74 (192)
=|||++|+|++.-........+.....+.+|+++.... +... .+++.+|||||..+... .|.
T Consensus 16 GKSTliN~L~~~~~~~~~~~~~~~~~~~~~T~~i~~~~~~i~~~g~~~~l~iiDTpGfgd~~~~~~~~~~i~~yi~~q~~ 95 (276)
T cd01850 16 GKSTFINTLFNTKLIPSDYPPDPAEEHIDKTVEIKSSKAEIEENGVKLKLTVIDTPGFGDNINNSDCWKPIVDYIDDQFD 95 (276)
T ss_pred CHHHHHHHHHcCCCccccCCCCccccccCCceEEEEEEEEEEECCEEEEEEEEecCCccccccchhhHHHHHHHHHHHHH
Confidence 38999999976533211111111223456777665543 3333 36899999999432210 010
Q ss_pred ------------Hhhh--cCCEEEEEEeCCCcccHHHH-HHHHHHHHhCCCCCCCcEEEEEeCCCCCCCCC----HHHHH
Q 029517 75 ------------KYYE--EAHAVVFVIDAACPSRFEDS-KTALEKVLRNEDLQGAPLLILANKQDLPDAVS----ADELA 135 (192)
Q Consensus 75 ------------~~~~--~~d~ii~v~D~~~~~s~~~~-~~~~~~i~~~~~~~~~piiiv~nK~Dl~~~~~----~~~~~ 135 (192)
..+. .+++++++++.+... +... .+.++.+. ..+|+++|+||+|+....+ ...+.
T Consensus 96 ~~l~~e~~~~r~~~~~d~rvh~~ly~i~~~~~~-l~~~D~~~lk~l~-----~~v~vi~VinK~D~l~~~e~~~~k~~i~ 169 (276)
T cd01850 96 QYLREESRIKRNPRIPDTRVHACLYFIEPTGHG-LKPLDIEFMKRLS-----KRVNIIPVIAKADTLTPEELKEFKQRIM 169 (276)
T ss_pred HHHHHHhhhcccccCCCCceEEEEEEEeCCCCC-CCHHHHHHHHHHh-----ccCCEEEEEECCCcCCHHHHHHHHHHHH
Confidence 1122 367888888876421 2221 23333332 2589999999999864211 22333
Q ss_pred hHcCccccCCcceEEEEeee
Q 029517 136 RYLDLKKLDERVCMFEAVSG 155 (192)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~Sa 155 (192)
+.+. ..+++++....
T Consensus 170 ~~l~-----~~~i~~~~~~~ 184 (276)
T cd01850 170 EDIE-----EHNIKIYKFPE 184 (276)
T ss_pred HHHH-----HcCCceECCCC
Confidence 3333 44566666544
No 290
>COG3596 Predicted GTPase [General function prediction only]
Probab=98.81 E-value=1.4e-08 Score=77.27 Aligned_cols=153 Identities=20% Similarity=0.269 Sum_probs=94.5
Q ss_pred ccccHHHHHHHHhhhhccCCCCCCCCCCCCcceEEEEEEecCEEEEEEeCCCCcc-------cHHHHHHhhhcCCEEEEE
Q 029517 14 TKTEFHTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPG-------LRSIWEKYYEEAHAVVFV 86 (192)
Q Consensus 14 kst~~~~l~~~~~~~~~~~~~~~~~~~~~T~g~~~~~~~~~~~~~~i~D~~G~~~-------~~~~~~~~~~~~d~ii~v 86 (192)
|||++|+|+...-..+++++.....+. +....+..-.+.+||+||-++ |+.....++.+.|.++.+
T Consensus 52 KSSliNALF~~~~~~v~~vg~~t~~~~-------~~~~~~~~~~l~lwDtPG~gdg~~~D~~~r~~~~d~l~~~DLvL~l 124 (296)
T COG3596 52 KSSLINALFQGEVKEVSKVGVGTDITT-------RLRLSYDGENLVLWDTPGLGDGKDKDAEHRQLYRDYLPKLDLVLWL 124 (296)
T ss_pred HHHHHHHHHhccCceeeecccCCCchh-------hHHhhccccceEEecCCCcccchhhhHHHHHHHHHHhhhccEEEEe
Confidence 899999998544443443332221110 111223345799999999543 666777888999999999
Q ss_pred EeCCCcccHHHHHHHHHHHHhCCCCCCCcEEEEEeCCCCCCCC---------CHHHHHhHcC-----ccccCCcceEEEE
Q 029517 87 IDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAV---------SADELARYLD-----LKKLDERVCMFEA 152 (192)
Q Consensus 87 ~D~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~~~---------~~~~~~~~~~-----~~~~~~~~~~~~~ 152 (192)
.|..++. +.--.++++.+.... .+.|++++.|.+|..... ....+.++.. +......-.+++.
T Consensus 125 ~~~~dra-L~~d~~f~~dVi~~~--~~~~~i~~VtQ~D~a~p~~~W~~~~~~p~~a~~qfi~~k~~~~~~~~q~V~pV~~ 201 (296)
T COG3596 125 IKADDRA-LGTDEDFLRDVIILG--LDKRVLFVVTQADRAEPGREWDSAGHQPSPAIKQFIEEKAEALGRLFQEVKPVVA 201 (296)
T ss_pred ccCCCcc-ccCCHHHHHHHHHhc--cCceeEEEEehhhhhccccccccccCCCCHHHHHHHHHHHHHHHHHHhhcCCeEE
Confidence 9987653 222224445554432 358999999999985421 1111222221 0001122456778
Q ss_pred eeecCCCCHHHHHHHHHHHHHhcc
Q 029517 153 VSGYDGFGIKESVEWLVEVMERSK 176 (192)
Q Consensus 153 ~Sa~~~~gi~e~~~~i~~~i~~~~ 176 (192)
.|+..+.|++++...++..+....
T Consensus 202 ~~~r~~wgl~~l~~ali~~lp~e~ 225 (296)
T COG3596 202 VSGRLPWGLKELVRALITALPVEA 225 (296)
T ss_pred eccccCccHHHHHHHHHHhCcccc
Confidence 888999999999999999877543
No 291
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=98.79 E-value=4.5e-08 Score=69.87 Aligned_cols=88 Identities=20% Similarity=0.208 Sum_probs=57.7
Q ss_pred hhhcCCEEEEEEeCCCccc--HHHHHHHHHHHHhCCCCCCCcEEEEEeCCCCCCCCCHHHHHhHcCccccCCcceEEEEe
Q 029517 76 YYEEAHAVVFVIDAACPSR--FEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAVSADELARYLDLKKLDERVCMFEAV 153 (192)
Q Consensus 76 ~~~~~d~ii~v~D~~~~~s--~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (192)
.++.+|++++|+|++++.. ...+..++.. . ..+.|+++|+||+|+........+...+. +......+.+
T Consensus 5 ~l~~aD~il~VvD~~~p~~~~~~~i~~~l~~---~--~~~~p~ilVlNKiDl~~~~~~~~~~~~~~----~~~~~~~~~i 75 (157)
T cd01858 5 VIDSSDVVIQVLDARDPMGTRCKHVEEYLKK---E--KPHKHLIFVLNKCDLVPTWVTARWVKILS----KEYPTIAFHA 75 (157)
T ss_pred hhhhCCEEEEEEECCCCccccCHHHHHHHHh---c--cCCCCEEEEEEchhcCCHHHHHHHHHHHh----cCCcEEEEEe
Confidence 4688999999999987632 2333333322 1 13589999999999964222222233332 1223346789
Q ss_pred eecCCCCHHHHHHHHHHHH
Q 029517 154 SGYDGFGIKESVEWLVEVM 172 (192)
Q Consensus 154 Sa~~~~gi~e~~~~i~~~i 172 (192)
||+.+.|++++.+++.+.+
T Consensus 76 Sa~~~~~~~~L~~~l~~~~ 94 (157)
T cd01858 76 SINNPFGKGSLIQLLRQFS 94 (157)
T ss_pred eccccccHHHHHHHHHHHH
Confidence 9999999999999987654
No 292
>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH. This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.
Probab=98.76 E-value=2.4e-08 Score=80.66 Aligned_cols=98 Identities=19% Similarity=0.277 Sum_probs=67.2
Q ss_pred CcccHHHHHHhhhcCCEEEEEEeCCCcccHHHHHHHHHHHHhCCCCCCCcEEEEEeCCCCCC-CCCHHHHHhHcCccccC
Q 029517 66 QPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPD-AVSADELARYLDLKKLD 144 (192)
Q Consensus 66 ~~~~~~~~~~~~~~~d~ii~v~D~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~-~~~~~~~~~~~~~~~~~ 144 (192)
.++|......+.+.++++++|+|+.+... .|...+.+.. .+.|+++|+||+|+.. ....+.+.+++.. ...
T Consensus 50 ~e~f~~~l~~~~~~~~~Il~VvD~~d~~~-----s~~~~l~~~~--~~~piilV~NK~DLl~k~~~~~~~~~~l~~-~~k 121 (360)
T TIGR03597 50 DDDFLNLLNSLGDSNALIVYVVDIFDFEG-----SLIPELKRFV--GGNPVLLVGNKIDLLPKSVNLSKIKEWMKK-RAK 121 (360)
T ss_pred HHHHHHHHhhcccCCcEEEEEEECcCCCC-----CccHHHHHHh--CCCCEEEEEEchhhCCCCCCHHHHHHHHHH-HHH
Confidence 55788888888899999999999976531 1222333221 3679999999999864 3344555544320 001
Q ss_pred Ccce---EEEEeeecCCCCHHHHHHHHHHH
Q 029517 145 ERVC---MFEAVSGYDGFGIKESVEWLVEV 171 (192)
Q Consensus 145 ~~~~---~~~~~Sa~~~~gi~e~~~~i~~~ 171 (192)
..++ .++++||++|.|++++++.|.+.
T Consensus 122 ~~g~~~~~i~~vSAk~g~gv~eL~~~l~~~ 151 (360)
T TIGR03597 122 ELGLKPVDIILVSAKKGNGIDELLDKIKKA 151 (360)
T ss_pred HcCCCcCcEEEecCCCCCCHHHHHHHHHHH
Confidence 2233 58999999999999999998653
No 293
>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF. Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.
Probab=98.75 E-value=3.2e-08 Score=77.17 Aligned_cols=100 Identities=21% Similarity=0.327 Sum_probs=67.3
Q ss_pred CCCc-ccHHHHHHhhhcCCEEEEEEeCCCcccHHHHHHHHHHHHhCCCCCCCcEEEEEeCCCCCCCCCHHHHHhHcCccc
Q 029517 64 GGQP-GLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAVSADELARYLDLKK 142 (192)
Q Consensus 64 ~G~~-~~~~~~~~~~~~~d~ii~v~D~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~ 142 (192)
|||. +........++.+|++++|+|+.++.+-.. ..+.... .+.|+++|+||+|+.+....+.+.+.+.
T Consensus 5 pgHm~k~~~~~~~~l~~aDvVl~V~Dar~p~~~~~--~~i~~~l-----~~kp~IiVlNK~DL~~~~~~~~~~~~~~--- 74 (276)
T TIGR03596 5 PGHMAKARREIKEKLKLVDVVIEVLDARIPLSSRN--PMIDEIR-----GNKPRLIVLNKADLADPAVTKQWLKYFE--- 74 (276)
T ss_pred hHHHHHHHHHHHHHHhhCCEEEEEEeCCCCCCCCC--hhHHHHH-----CCCCEEEEEEccccCCHHHHHHHHHHHH---
Confidence 5654 445566778899999999999986643322 2222222 2579999999999864211222222332
Q ss_pred cCCcceEEEEeeecCCCCHHHHHHHHHHHHHhc
Q 029517 143 LDERVCMFEAVSGYDGFGIKESVEWLVEVMERS 175 (192)
Q Consensus 143 ~~~~~~~~~~~Sa~~~~gi~e~~~~i~~~i~~~ 175 (192)
..+.+++.+||+++.|++++.+.+.+.+...
T Consensus 75 --~~~~~vi~iSa~~~~gi~~L~~~i~~~~~~~ 105 (276)
T TIGR03596 75 --EKGIKALAINAKKGKGVKKIIKAAKKLLKEK 105 (276)
T ss_pred --HcCCeEEEEECCCcccHHHHHHHHHHHHHHh
Confidence 2245789999999999999999988876543
No 294
>cd01849 YlqF_related_GTPase YlqF-related GTPases. These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.
Probab=98.75 E-value=3.7e-08 Score=70.23 Aligned_cols=82 Identities=22% Similarity=0.359 Sum_probs=54.9
Q ss_pred CEEEEEEeCCCcccHHHHHHHHH-HHHhCCCCCCCcEEEEEeCCCCCCCCCHHHHHhHcC-ccccCCcceEEEEeeecCC
Q 029517 81 HAVVFVIDAACPSRFEDSKTALE-KVLRNEDLQGAPLLILANKQDLPDAVSADELARYLD-LKKLDERVCMFEAVSGYDG 158 (192)
Q Consensus 81 d~ii~v~D~~~~~s~~~~~~~~~-~i~~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~~-~~~~~~~~~~~~~~Sa~~~ 158 (192)
|++++|+|++++.+... .++. ..... .++|+++|+||+|+... ++..++.. .. ......++.+||++|
T Consensus 1 Dvvl~VvD~~~p~~~~~--~~i~~~~~~~---~~~p~IiVlNK~Dl~~~---~~~~~~~~~~~--~~~~~~ii~vSa~~~ 70 (155)
T cd01849 1 DVILEVLDARDPLGTRS--PDIERVLIKE---KGKKLILVLNKADLVPK---EVLRKWLAYLR--HSYPTIPFKISATNG 70 (155)
T ss_pred CEEEEEEeccCCccccC--HHHHHHHHhc---CCCCEEEEEechhcCCH---HHHHHHHHHHH--hhCCceEEEEeccCC
Confidence 78999999987754432 2333 22222 46899999999998642 22222211 00 122467889999999
Q ss_pred CCHHHHHHHHHHHH
Q 029517 159 FGIKESVEWLVEVM 172 (192)
Q Consensus 159 ~gi~e~~~~i~~~i 172 (192)
.|++++.+.+.+..
T Consensus 71 ~gi~~L~~~i~~~~ 84 (155)
T cd01849 71 QGIEKKESAFTKQT 84 (155)
T ss_pred cChhhHHHHHHHHh
Confidence 99999999987754
No 295
>KOG1144 consensus Translation initiation factor 5B (eIF-5B) [Translation, ribosomal structure and biogenesis]
Probab=98.74 E-value=5.8e-08 Score=82.50 Aligned_cols=112 Identities=19% Similarity=0.254 Sum_probs=78.0
Q ss_pred EEEEEeCCCCcccHHHHHHhhhcCCEEEEEEeCCC---cccHHHHHHHHHHHHhCCCCCCCcEEEEEeCCCCCC------
Q 029517 57 KLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAAC---PSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPD------ 127 (192)
Q Consensus 57 ~~~i~D~~G~~~~~~~~~~~~~~~d~ii~v~D~~~---~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~------ 127 (192)
-+-++|||||+.|..++......||.+|+|+|+-. +.+++.+.. ++. .+.|+|+.+||+|..=
T Consensus 541 g~lvIdtpghEsFtnlRsrgsslC~~aIlvvdImhGlepqtiESi~l-----LR~---rktpFivALNKiDRLYgwk~~p 612 (1064)
T KOG1144|consen 541 GLLVIDTPGHESFTNLRSRGSSLCDLAILVVDIMHGLEPQTIESINL-----LRM---RKTPFIVALNKIDRLYGWKSCP 612 (1064)
T ss_pred eeEEecCCCchhhhhhhhccccccceEEEEeehhccCCcchhHHHHH-----HHh---cCCCeEEeehhhhhhcccccCC
Confidence 57899999999999999988899999999999863 444444333 222 5799999999999721
Q ss_pred -C-----------CCHHHHHhH-------cCccc------c----CCcceEEEEeeecCCCCHHHHHHHHHHHHHhcc
Q 029517 128 -A-----------VSADELARY-------LDLKK------L----DERVCMFEAVSGYDGFGIKESVEWLVEVMERSK 176 (192)
Q Consensus 128 -~-----------~~~~~~~~~-------~~~~~------~----~~~~~~~~~~Sa~~~~gi~e~~~~i~~~i~~~~ 176 (192)
. ....++... +...+ . ....+.++++||..|.||-+++-+|++......
T Consensus 613 ~~~i~~~lkkQ~k~v~~EF~~R~~~ii~efaEQgLN~~LyykNk~~~~~vsiVPTSA~sGeGipdLl~llv~ltQk~m 690 (1064)
T KOG1144|consen 613 NAPIVEALKKQKKDVQNEFKERLNNIIVEFAEQGLNAELYYKNKEMGETVSIVPTSAISGEGIPDLLLLLVQLTQKTM 690 (1064)
T ss_pred CchHHHHHHHhhHHHHHHHHHHHHHHHHHHHHcccchhheeecccccceEEeeecccccCCCcHHHHHHHHHHHHHHH
Confidence 0 000111111 11111 1 122577899999999999999999998766543
No 296
>COG4917 EutP Ethanolamine utilization protein [Amino acid transport and metabolism]
Probab=98.71 E-value=3.3e-08 Score=66.49 Aligned_cols=127 Identities=17% Similarity=0.135 Sum_probs=82.6
Q ss_pred hccccHHHHHHHHhhhhccCCCCCCCCCCCCcceEEEEEEecCEEEEEEeCCCCc----ccHHHHHHhhhcCCEEEEEEe
Q 029517 13 FTKTEFHTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQP----GLRSIWEKYYEEAHAVVFVID 88 (192)
Q Consensus 13 ~kst~~~~l~~~~~~~~~~~~~~~~~~~~~T~g~~~~~~~~~~~~~~i~D~~G~~----~~~~~~~~~~~~~d~ii~v~D 88 (192)
=|+|++|+|-+.-.. |..|..+++.. -...||||.. .+..........+|++++|-.
T Consensus 13 GKTtL~q~L~G~~~l------------ykKTQAve~~d-------~~~IDTPGEy~~~~~~Y~aL~tt~~dadvi~~v~~ 73 (148)
T COG4917 13 GKTTLFQSLYGNDTL------------YKKTQAVEFND-------KGDIDTPGEYFEHPRWYHALITTLQDADVIIYVHA 73 (148)
T ss_pred CchhHHHHhhcchhh------------hcccceeeccC-------ccccCCchhhhhhhHHHHHHHHHhhccceeeeeec
Confidence 378888888655433 33344333211 1247999943 333334445678999999999
Q ss_pred CCCcccHHHHHHHHHHHHhCCCCCCCcEEEEEeCCCCCCCCCHHHHHhHcCccccCCcceEEEEeeecCCCCHHHHHHHH
Q 029517 89 AACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAVSADELARYLDLKKLDERVCMFEAVSGYDGFGIKESVEWL 168 (192)
Q Consensus 89 ~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~e~~~~i 168 (192)
+.++++.-. . .+... ...|+|-+.+|+|+++..+.+...+++.. ...-++|++|+.++.||+++++.|
T Consensus 74 and~~s~f~--p---~f~~~---~~k~vIgvVTK~DLaed~dI~~~~~~L~e----aGa~~IF~~s~~d~~gv~~l~~~L 141 (148)
T COG4917 74 ANDPESRFP--P---GFLDI---GVKKVIGVVTKADLAEDADISLVKRWLRE----AGAEPIFETSAVDNQGVEELVDYL 141 (148)
T ss_pred ccCccccCC--c---ccccc---cccceEEEEecccccchHhHHHHHHHHHH----cCCcceEEEeccCcccHHHHHHHH
Confidence 887743211 1 11111 35679999999999965455666666652 225689999999999999999987
Q ss_pred HH
Q 029517 169 VE 170 (192)
Q Consensus 169 ~~ 170 (192)
..
T Consensus 142 ~~ 143 (148)
T COG4917 142 AS 143 (148)
T ss_pred Hh
Confidence 64
No 297
>PLN00116 translation elongation factor EF-2 subunit; Provisional
Probab=98.69 E-value=1.2e-07 Score=84.24 Aligned_cols=67 Identities=15% Similarity=0.111 Sum_probs=53.1
Q ss_pred CEEEEEEeCCCCcccHHHHHHhhhcCCEEEEEEeCCCcccHHHHHHHHHHHHhCCCCCCCcEEEEEeCCCCC
Q 029517 55 NSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLP 126 (192)
Q Consensus 55 ~~~~~i~D~~G~~~~~~~~~~~~~~~d~ii~v~D~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~ 126 (192)
+..+.++|||||.+|.......++.+|++|+|+|+...-...... .+..+.. .++|+++++||+|+.
T Consensus 97 ~~~inliDtPGh~dF~~e~~~al~~~D~ailVvda~~Gv~~~t~~-~~~~~~~----~~~p~i~~iNK~D~~ 163 (843)
T PLN00116 97 EYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTET-VLRQALG----ERIRPVLTVNKMDRC 163 (843)
T ss_pred ceEEEEECCCCHHHHHHHHHHHHhhcCEEEEEEECCCCCcccHHH-HHHHHHH----CCCCEEEEEECCccc
Confidence 678899999999999998888899999999999998764433322 2333322 368999999999987
No 298
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=98.69 E-value=6.2e-08 Score=67.94 Aligned_cols=78 Identities=23% Similarity=0.264 Sum_probs=52.2
Q ss_pred HHHhhhcCCEEEEEEeCCCcccHH--HHHHHHHHHHhCCCCCCCcEEEEEeCCCCCCCCCHHHHHhHcCccccCCcceEE
Q 029517 73 WEKYYEEAHAVVFVIDAACPSRFE--DSKTALEKVLRNEDLQGAPLLILANKQDLPDAVSADELARYLDLKKLDERVCMF 150 (192)
Q Consensus 73 ~~~~~~~~d~ii~v~D~~~~~s~~--~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (192)
....++.+|++++|+|++++.+.. .+.+++... . .++|+++++||+|+.......++.+.++ ..+..+
T Consensus 5 ~~~~i~~aD~vl~ViD~~~p~~~~~~~l~~~l~~~----~-~~k~~iivlNK~DL~~~~~~~~~~~~~~-----~~~~~i 74 (141)
T cd01857 5 LWRVVERSDIVVQIVDARNPLLFRPPDLERYVKEV----D-PRKKNILLLNKADLLTEEQRKAWAEYFK-----KEGIVV 74 (141)
T ss_pred HHHHHhhCCEEEEEEEccCCcccCCHHHHHHHHhc----c-CCCcEEEEEechhcCCHHHHHHHHHHHH-----hcCCeE
Confidence 345688999999999998775433 333443322 1 4689999999999864322233334443 334688
Q ss_pred EEeeecCCCC
Q 029517 151 EAVSGYDGFG 160 (192)
Q Consensus 151 ~~~Sa~~~~g 160 (192)
+.+||+++.+
T Consensus 75 i~iSa~~~~~ 84 (141)
T cd01857 75 VFFSALKENA 84 (141)
T ss_pred EEEEecCCCc
Confidence 9999998765
No 299
>PRK09563 rbgA GTPase YlqF; Reviewed
Probab=98.65 E-value=7.8e-08 Score=75.37 Aligned_cols=101 Identities=22% Similarity=0.347 Sum_probs=67.8
Q ss_pred CCCCc-ccHHHHHHhhhcCCEEEEEEeCCCcccHHHHHHHHHHHHhCCCCCCCcEEEEEeCCCCCCCCCHHHHHhHcCcc
Q 029517 63 LGGQP-GLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAVSADELARYLDLK 141 (192)
Q Consensus 63 ~~G~~-~~~~~~~~~~~~~d~ii~v~D~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~ 141 (192)
.|||. +-.......++.+|++++|+|+.++.+.+. .++.... .+.|+++|+||+|+.+....+.+.+++.
T Consensus 7 fpgHm~k~~~~l~~~l~~aDvIL~VvDar~p~~~~~--~~l~~~~-----~~kp~iiVlNK~DL~~~~~~~~~~~~~~-- 77 (287)
T PRK09563 7 FPGHMAKARREIKENLKLVDVVIEVLDARIPLSSEN--PMIDKII-----GNKPRLLILNKSDLADPEVTKKWIEYFE-- 77 (287)
T ss_pred cHHHHHHHHHHHHHHhhhCCEEEEEEECCCCCCCCC--hhHHHHh-----CCCCEEEEEEchhcCCHHHHHHHHHHHH--
Confidence 46654 344456677899999999999987643322 2223322 2589999999999864211223333332
Q ss_pred ccCCcceEEEEeeecCCCCHHHHHHHHHHHHHhc
Q 029517 142 KLDERVCMFEAVSGYDGFGIKESVEWLVEVMERS 175 (192)
Q Consensus 142 ~~~~~~~~~~~~Sa~~~~gi~e~~~~i~~~i~~~ 175 (192)
..+.+++.+||+++.|++++.+.+.+.+...
T Consensus 78 ---~~~~~vi~vSa~~~~gi~~L~~~l~~~l~~~ 108 (287)
T PRK09563 78 ---EQGIKALAINAKKGQGVKKILKAAKKLLKEK 108 (287)
T ss_pred ---HcCCeEEEEECCCcccHHHHHHHHHHHHHHH
Confidence 2245788999999999999999988876543
No 300
>PTZ00416 elongation factor 2; Provisional
Probab=98.62 E-value=1.9e-07 Score=82.92 Aligned_cols=67 Identities=16% Similarity=0.152 Sum_probs=52.7
Q ss_pred CEEEEEEeCCCCcccHHHHHHhhhcCCEEEEEEeCCCcccHHHHHHHHHHHHhCCCCCCCcEEEEEeCCCCC
Q 029517 55 NSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLP 126 (192)
Q Consensus 55 ~~~~~i~D~~G~~~~~~~~~~~~~~~d~ii~v~D~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~ 126 (192)
+..+.++||||+.+|.......++.+|++|+|+|+...-..+.- ..+..+... ++|+++++||+|+.
T Consensus 91 ~~~i~liDtPG~~~f~~~~~~al~~~D~ailVvda~~g~~~~t~-~~~~~~~~~----~~p~iv~iNK~D~~ 157 (836)
T PTZ00416 91 PFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVEGVCVQTE-TVLRQALQE----RIRPVLFINKVDRA 157 (836)
T ss_pred ceEEEEEcCCCHHhHHHHHHHHHhcCCeEEEEEECCCCcCccHH-HHHHHHHHc----CCCEEEEEEChhhh
Confidence 56799999999999988888889999999999999876433332 333333333 58999999999987
No 301
>PTZ00258 GTP-binding protein; Provisional
Probab=98.60 E-value=4.9e-07 Score=73.30 Aligned_cols=73 Identities=18% Similarity=0.177 Sum_probs=45.7
Q ss_pred ccccHHHHHHHHhhhhccCCCCCCCCCCCCcceEEEE----------EEe---cCEEEEEEeCCCCcc-------cHHHH
Q 029517 14 TKTEFHTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGR----------IEV---SNSKLVFWDLGGQPG-------LRSIW 73 (192)
Q Consensus 14 kst~~~~l~~~~~~~~~~~~~~~~~~~~~T~g~~~~~----------~~~---~~~~~~i~D~~G~~~-------~~~~~ 73 (192)
|||+||+|.+. ...+.+++.++..|..|.-... +.. -..+++++||||... .....
T Consensus 34 KSTLfnaLt~~----~~~v~n~pftTi~p~~g~v~~~d~r~~~l~~~~~~~~~~~aqi~lvDtpGLv~ga~~g~gLg~~f 109 (390)
T PTZ00258 34 KSTTFNALCKQ----QVPAENFPFCTIDPNTARVNVPDERFDWLCKHFKPKSIVPAQLDITDIAGLVKGASEGEGLGNAF 109 (390)
T ss_pred hHHHHHHHhcC----cccccCCCCCcccceEEEEecccchhhHHHHHcCCcccCCCCeEEEECCCcCcCCcchhHHHHHH
Confidence 78888888543 3455566666666666653211 000 134589999999421 22233
Q ss_pred HHhhhcCCEEEEEEeCC
Q 029517 74 EKYYEEAHAVVFVIDAA 90 (192)
Q Consensus 74 ~~~~~~~d~ii~v~D~~ 90 (192)
...++++|++++|+|+.
T Consensus 110 L~~Ir~aD~il~VVd~f 126 (390)
T PTZ00258 110 LSHIRAVDGIYHVVRAF 126 (390)
T ss_pred HHHHHHCCEEEEEEeCC
Confidence 44678899999999974
No 302
>KOG3887 consensus Predicted small GTPase involved in nuclear protein import [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.59 E-value=2.9e-07 Score=68.99 Aligned_cols=132 Identities=19% Similarity=0.223 Sum_probs=83.8
Q ss_pred CCCcceEEEEEEecCEEEEEEeCCCCcccHH---HHHHhhhcCCEEEEEEeCCCc--ccHHHHHHHHHHHHhCCCCCCCc
Q 029517 41 VPTVGLNIGRIEVSNSKLVFWDLGGQPGLRS---IWEKYYEEAHAVVFVIDAACP--SRFEDSKTALEKVLRNEDLQGAP 115 (192)
Q Consensus 41 ~~T~g~~~~~~~~~~~~~~i~D~~G~~~~~~---~~~~~~~~~d~ii~v~D~~~~--~s~~~~~~~~~~i~~~~~~~~~p 115 (192)
+.|..+...++...-+.+++||.|||..+-. .....++++.++|+|+|+.+. +.+.++...+.+..+. .+++-
T Consensus 60 ESTski~~d~is~sfinf~v~dfPGQ~~~Fd~s~D~e~iF~~~gALifvIDaQddy~eala~L~~~v~raykv--Np~in 137 (347)
T KOG3887|consen 60 ESTSKITRDHISNSFINFQVWDFPGQMDFFDPSFDYEMIFRGVGALIFVIDAQDDYMEALARLHMTVERAYKV--NPNIN 137 (347)
T ss_pred eccCcccHhhhhhhhcceEEeecCCccccCCCccCHHHHHhccCeEEEEEechHHHHHHHHHHHHHhhheeec--CCCce
Confidence 3333333333444456899999999865422 356678999999999998754 2233333333333333 36889
Q ss_pred EEEEEeCCCCCCC----CCHHHHHhHcC----ccccCCcceEEEEeeecCCCCHHHHHHHHHHHHHhc
Q 029517 116 LLILANKQDLPDA----VSADELARYLD----LKKLDERVCMFEAVSGYDGFGIKESVEWLVEVMERS 175 (192)
Q Consensus 116 iiiv~nK~Dl~~~----~~~~~~~~~~~----~~~~~~~~~~~~~~Sa~~~~gi~e~~~~i~~~i~~~ 175 (192)
+-++++|.|.... .....+.+..+ -.........|+.+|..+ ..|.|+|.++++.+..+
T Consensus 138 ~EVfiHKvDGLsdd~kietqrdI~qr~~d~l~d~gle~v~vsf~LTSIyD-HSIfEAFSkvVQkLipq 204 (347)
T KOG3887|consen 138 FEVFIHKVDGLSDDFKIETQRDIHQRTNDELADAGLEKVQVSFYLTSIYD-HSIFEAFSKVVQKLIPQ 204 (347)
T ss_pred EEEEEEeccCCchhhhhhhHHHHHHHhhHHHHhhhhccceEEEEEeeecc-hHHHHHHHHHHHHHhhh
Confidence 9999999997541 11112222222 112235578899999887 67999999999877654
No 303
>PRK07560 elongation factor EF-2; Reviewed
Probab=98.58 E-value=3.2e-07 Score=80.51 Aligned_cols=69 Identities=17% Similarity=0.158 Sum_probs=52.0
Q ss_pred cCEEEEEEeCCCCcccHHHHHHhhhcCCEEEEEEeCCCcccHHHHHHHHHHHHhCCCCCCCcEEEEEeCCCCCC
Q 029517 54 SNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPD 127 (192)
Q Consensus 54 ~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ii~v~D~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~ 127 (192)
.+..+.++||||+.+|.......++.+|++|+|+|+...-..+.. ..+...... +.|.++++||+|+..
T Consensus 85 ~~~~i~liDtPG~~df~~~~~~~l~~~D~avlVvda~~g~~~~t~-~~~~~~~~~----~~~~iv~iNK~D~~~ 153 (731)
T PRK07560 85 KEYLINLIDTPGHVDFGGDVTRAMRAVDGAIVVVDAVEGVMPQTE-TVLRQALRE----RVKPVLFINKVDRLI 153 (731)
T ss_pred CcEEEEEEcCCCccChHHHHHHHHHhcCEEEEEEECCCCCCccHH-HHHHHHHHc----CCCeEEEEECchhhc
Confidence 478899999999999988888899999999999999765333322 222222222 467899999999863
No 304
>KOG0099 consensus G protein subunit Galphas, small G protein superfamily [Signal transduction mechanisms]
Probab=98.55 E-value=6.4e-07 Score=67.91 Aligned_cols=133 Identities=19% Similarity=0.390 Sum_probs=95.6
Q ss_pred CCcceEEEEEEecCEEEEEEeCCCCcccHHHHHHhhhcCCEEEEEEeCCC----------cccHHHHHHHHHHHHhCCCC
Q 029517 42 PTVGLNIGRIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAAC----------PSRFEDSKTALEKVLRNEDL 111 (192)
Q Consensus 42 ~T~g~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ii~v~D~~~----------~~s~~~~~~~~~~i~~~~~~ 111 (192)
-|.|+-...+..+.+++..+|++|+.+-+..|..+++...++|+|+.++. ...+++...+++.+...+++
T Consensus 188 lTsGIfet~FqVdkv~FhMfDVGGQRDeRrKWIQcFndvtAiifv~acSsyn~vlrED~~qNRL~EaL~LFksiWnNRwL 267 (379)
T KOG0099|consen 188 LTSGIFETKFQVDKVNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVACSSYNMVLREDNQQNRLQEALNLFKSIWNNRWL 267 (379)
T ss_pred hccceeeEEEeccccceeeeccCCchhhhhhHHHHhcCccEEEEEEeccchhhhhhcCCchhHHHHHHHHHHHHHhhhHH
Confidence 36677667788889999999999999999999999999999999997752 34566677777888888887
Q ss_pred CCCcEEEEEeCCCCCCC---CCHHHHHhHcC----------------------------------c---cccCCcceEEE
Q 029517 112 QGAPLLILANKQDLPDA---VSADELARYLD----------------------------------L---KKLDERVCMFE 151 (192)
Q Consensus 112 ~~~piiiv~nK~Dl~~~---~~~~~~~~~~~----------------------------------~---~~~~~~~~~~~ 151 (192)
..+.+|+++||.|+... -....+.+++. . ..-..+.+-..
T Consensus 268 ~tisvIlFLNKqDllaeKi~Agk~~i~dyFpEf~~y~~p~da~~es~~d~~v~raK~fird~FlRiSta~~Dg~h~CYpH 347 (379)
T KOG0099|consen 268 RTISVILFLNKQDLLAEKILAGKSKIEDYFPEFARYTTPEDATPESGEDPRVTRAKYFIRDEFLRISTASGDGRHYCYPH 347 (379)
T ss_pred hhhheeEEecHHHHHHHHHHcchhhHHHhChHHhccCCccccCCCCCCChhhHHHHHhhhhhHhhhccccCCCceecccc
Confidence 88999999999998320 00011111111 0 00112334456
Q ss_pred EeeecCCCCHHHHHHHHHHHHHh
Q 029517 152 AVSGYDGFGIKESVEWLVEVMER 174 (192)
Q Consensus 152 ~~Sa~~~~gi~e~~~~i~~~i~~ 174 (192)
.+.|.+..+|..+|....+.+..
T Consensus 348 FTcAvDTenIrrVFnDcrdiIqr 370 (379)
T KOG0099|consen 348 FTCAVDTENIRRVFNDCRDIIQR 370 (379)
T ss_pred eeEeechHHHHHHHHHHHHHHHH
Confidence 67889999999999997766543
No 305
>TIGR02836 spore_IV_A stage IV sporulation protein A. A comparative genome analysis of all sequenced genomes of shows a number of proteins conserved strictly among the endospore-forming subset of the Firmicutes. This protein, a member of this panel, is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis.
Probab=98.52 E-value=2e-06 Score=69.62 Aligned_cols=147 Identities=18% Similarity=0.134 Sum_probs=79.5
Q ss_pred hccccHHHHHHHHh----h-----------hhccCCCCCCC----CCCCCcceEEEEEEecCEEEEEEeCCCCc------
Q 029517 13 FTKTEFHTLLEKLK----S-----------VYSNVEGLPPD----RIVPTVGLNIGRIEVSNSKLVFWDLGGQP------ 67 (192)
Q Consensus 13 ~kst~~~~l~~~~~----~-----------~~~~~~~~~~~----~~~~T~g~~~~~~~~~~~~~~i~D~~G~~------ 67 (192)
=|||++|+|++++. . +.+..++.+.. .+.|.-.+++...++-...+.+.||+|-.
T Consensus 29 GKSTfIn~fm~q~VlP~i~~~~~k~Ra~DELpqs~~GktItTTePkfvP~kAvEI~~~~~~~~~VrlIDcvG~~v~GalG 108 (492)
T TIGR02836 29 GKSTFIKKFMELLVLPNISNEYDKERAQDELPQSAAGKTIMTTEPKFVPNEAVEININEGTKFKVRLVDCVGYTVKGALG 108 (492)
T ss_pred ChHHHHHHHHhhhccccccchhHHhHHHhccCcCCCCCCcccCCCccccCcceEEeccCCCcccEEEEECCCcccCCCcc
Confidence 48999999998822 2 22233342222 22333344444444456789999999911
Q ss_pred --ccH---------------------HHHHHhhh-cCCEEEEEE-eCC----CcccHHHHH-HHHHHHHhCCCCCCCcEE
Q 029517 68 --GLR---------------------SIWEKYYE-EAHAVVFVI-DAA----CPSRFEDSK-TALEKVLRNEDLQGAPLL 117 (192)
Q Consensus 68 --~~~---------------------~~~~~~~~-~~d~ii~v~-D~~----~~~s~~~~~-~~~~~i~~~~~~~~~pii 117 (192)
+-. -.....++ .+|..|+|. |.+ ..+.+..+. .++..+.+. ++|++
T Consensus 109 ~~r~~k~RmV~TPW~d~~IPF~~AAeiGT~kVI~dhstIgivVtTDgsi~dI~Re~y~~aEe~~i~eLk~~----~kPfi 184 (492)
T TIGR02836 109 YMEEDKPRMVSTPWYDYEIPFEEAAEIGTRKVIQEHSTIGVVVTTDGTITDIPREDYVEAEERVIEELKEL----NKPFI 184 (492)
T ss_pred ceeccccccccCCcccccCchhhhhhhhHHHHHHhcCcEEEEEEcCCCccccccccchHHHHHHHHHHHhc----CCCEE
Confidence 100 11344566 899999988 774 112333332 445554444 79999
Q ss_pred EEEeCCCCCCCCCHHHHHhHcCccccCCcceEEEEeeecC--CCCHHHHHHHH
Q 029517 118 ILANKQDLPDAVSADELARYLDLKKLDERVCMFEAVSGYD--GFGIKESVEWL 168 (192)
Q Consensus 118 iv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~--~~gi~e~~~~i 168 (192)
+++||.|-.... ..++.+.+. ...+.+++.+|+.. ...|..+++.+
T Consensus 185 ivlN~~dp~~~e-t~~l~~~l~----eky~vpvl~v~c~~l~~~DI~~il~~v 232 (492)
T TIGR02836 185 ILLNSTHPYHPE-TEALRQELE----EKYDVPVLAMDVESMRESDILSVLEEV 232 (492)
T ss_pred EEEECcCCCCch-hHHHHHHHH----HHhCCceEEEEHHHcCHHHHHHHHHHH
Confidence 999999943222 222222222 12346667777744 23344444443
No 306
>KOG0458 consensus Elongation factor 1 alpha [Translation, ribosomal structure and biogenesis]
Probab=98.52 E-value=6.5e-07 Score=74.44 Aligned_cols=113 Identities=21% Similarity=0.275 Sum_probs=76.7
Q ss_pred EEEEEecCEEEEEEeCCCCcccHHHHHHhhhcCCEEEEEEeCCCcccHHH-------HHHHHHHHHhCCCCCCCcEEEEE
Q 029517 48 IGRIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFED-------SKTALEKVLRNEDLQGAPLLILA 120 (192)
Q Consensus 48 ~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ii~v~D~~~~~s~~~-------~~~~~~~i~~~~~~~~~piiiv~ 120 (192)
...++-....+.+.|.|||..|......-...+|++++|+|++. ..|+. .++ +..+++.. .-..+++++
T Consensus 247 ~~~fes~~~~~tliDaPGhkdFi~nmi~g~sqaD~avLvvd~s~-~~FE~gfd~~gQtrE-ha~llr~L--gi~qlivai 322 (603)
T KOG0458|consen 247 TTWFESKSKIVTLIDAPGHKDFIPNMISGASQADVAVLVVDAST-GEFESGFDPGGQTRE-HALLLRSL--GISQLIVAI 322 (603)
T ss_pred eEEEecCceeEEEecCCCccccchhhhccccccceEEEEEECCc-chhhhccCCCCchHH-HHHHHHHc--CcceEEEEe
Confidence 33566667889999999999998877666778999999999973 23432 222 22223321 235789999
Q ss_pred eCCCCCC--CCCHHHHHh----Hc-CccccCCcceEEEEeeecCCCCHHHH
Q 029517 121 NKQDLPD--AVSADELAR----YL-DLKKLDERVCMFEAVSGYDGFGIKES 164 (192)
Q Consensus 121 nK~Dl~~--~~~~~~~~~----~~-~~~~~~~~~~~~~~~Sa~~~~gi~e~ 164 (192)
||+|+.+ +..-+++.. ++ +...+....+.|++||+..|+|+...
T Consensus 323 NKmD~V~Wsq~RF~eIk~~l~~fL~~~~gf~es~v~FIPiSGl~GeNL~k~ 373 (603)
T KOG0458|consen 323 NKMDLVSWSQDRFEEIKNKLSSFLKESCGFKESSVKFIPISGLSGENLIKI 373 (603)
T ss_pred ecccccCccHHHHHHHHHHHHHHHHHhcCcccCCcceEecccccCCccccc
Confidence 9999987 323333333 33 23345566789999999999997544
No 307
>cd01882 BMS1 Bms1. Bms1 is an essential, evolutionarily conserved, nucleolar protein. Its depletion interferes with processing of the 35S pre-rRNA at sites A0, A1, and A2, and the formation of 40S subunits. Bms1, the putative endonuclease Rc11, and the essential U3 small nucleolar RNA form a stable subcomplex that is believed to control an early step in the formation of the 40S subumit. The C-terminal domain of Bms1 contains a GTPase-activating protein (GAP) that functions intramolecularly. It is believed that Rc11 activates Bms1 by acting as a guanine-nucleotide exchange factor (GEF) to promote GDP/GTP exchange, and that activated (GTP-bound) Bms1 delivers Rc11 to the preribosomes.
Probab=98.51 E-value=1.9e-06 Score=65.24 Aligned_cols=129 Identities=16% Similarity=0.105 Sum_probs=71.2
Q ss_pred hccccHHHHHHHHhhhhccCCCCCCCCCCCCcceEEEEEEecCEEEEEEeCCCCcccHHHHHHhhhcCCEEEEEEeCCCc
Q 029517 13 FTKTEFHTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACP 92 (192)
Q Consensus 13 ~kst~~~~l~~~~~~~~~~~~~~~~~~~~~T~g~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ii~v~D~~~~ 92 (192)
-|||++|+|++...... . ....|. +.-....+.++.++||||.. ... ....+.+|++++|+|++..
T Consensus 51 GKstl~~~l~~~~~~~~-------~---~~~~g~-i~i~~~~~~~i~~vDtPg~~--~~~-l~~ak~aDvVllviDa~~~ 116 (225)
T cd01882 51 GKTTLIKSLVKNYTKQN-------I---SDIKGP-ITVVTGKKRRLTFIECPNDI--NAM-IDIAKVADLVLLLIDASFG 116 (225)
T ss_pred CHHHHHHHHHhhcccCc-------c---cccccc-EEEEecCCceEEEEeCCchH--HHH-HHHHHhcCEEEEEEecCcC
Confidence 38899998887643210 0 011111 12233356789999999864 222 3346889999999999755
Q ss_pred ccHHHHHHHHHHHHhCCCCCCCcE-EEEEeCCCCCCCC-CHHHHHhHcCcccc--CCcceEEEEeeecCCCC
Q 029517 93 SRFEDSKTALEKVLRNEDLQGAPL-LILANKQDLPDAV-SADELARYLDLKKL--DERVCMFEAVSGYDGFG 160 (192)
Q Consensus 93 ~s~~~~~~~~~~i~~~~~~~~~pi-iiv~nK~Dl~~~~-~~~~~~~~~~~~~~--~~~~~~~~~~Sa~~~~g 160 (192)
..... ...+. .... .+.|. ++|+||+|+.+.. ..+++.+.+..... ...+.+++.+||++...
T Consensus 117 ~~~~~-~~i~~-~l~~---~g~p~vi~VvnK~D~~~~~~~~~~~~~~l~~~~~~~~~~~~ki~~iSa~~~~~ 183 (225)
T cd01882 117 FEMET-FEFLN-ILQV---HGFPRVMGVLTHLDLFKKNKTLRKTKKRLKHRFWTEVYQGAKLFYLSGIVHGR 183 (225)
T ss_pred CCHHH-HHHHH-HHHH---cCCCeEEEEEeccccCCcHHHHHHHHHHHHHHHHHhhCCCCcEEEEeeccCCC
Confidence 43322 12222 2222 35674 5599999986421 12222222210000 12357899999998643
No 308
>KOG0085 consensus G protein subunit Galphaq/Galphay, small G protein superfamily [Signal transduction mechanisms]
Probab=98.50 E-value=2.1e-07 Score=69.35 Aligned_cols=136 Identities=18% Similarity=0.324 Sum_probs=101.7
Q ss_pred CCCCcceEEEEEEecCEEEEEEeCCCCcccHHHHHHhhhcCCEEEEEEeC----------CCcccHHHHHHHHHHHHhCC
Q 029517 40 IVPTVGLNIGRIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDA----------ACPSRFEDSKTALEKVLRNE 109 (192)
Q Consensus 40 ~~~T~g~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ii~v~D~----------~~~~s~~~~~~~~~~i~~~~ 109 (192)
..||.|+..+.++..++.+.++|++|+..-+..|.+++.+...+++++.. .++...++...++..+....
T Consensus 183 RvPTTGi~eypfdl~~iifrmvDvGGqrserrKWIHCFEnvtsi~fLvaLSEYDQvL~E~dnENRMeESkALFrTIi~yP 262 (359)
T KOG0085|consen 183 RVPTTGIIEYPFDLQKIIFRMVDVGGQRSERRKWIHCFENVTSIIFLVALSEYDQVLVESDNENRMEESKALFRTIITYP 262 (359)
T ss_pred ecCcccceecCcchhhheeeeeecCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHccchhhHHHHHHHHHHHhccc
Confidence 36888988888888899999999999998899999999998888887744 35566778888888899998
Q ss_pred CCCCCcEEEEEeCCCCCCC-C-----------------CHHHHHhHcC-----ccccCCcceEEEEeeecCCCCHHHHHH
Q 029517 110 DLQGAPLLILANKQDLPDA-V-----------------SADELARYLD-----LKKLDERVCMFEAVSGYDGFGIKESVE 166 (192)
Q Consensus 110 ~~~~~piiiv~nK~Dl~~~-~-----------------~~~~~~~~~~-----~~~~~~~~~~~~~~Sa~~~~gi~e~~~ 166 (192)
+..+.++|+++||-|+.+. + +.+.+.+++- +..-..+.+--..+.|.+.+||.-+|.
T Consensus 263 WF~nssVIlFLNKkDlLEekI~ySHl~~YFPe~~GP~qDa~AAreFILkm~~d~nPd~dKii~SHfTcATDT~NIRfVFa 342 (359)
T KOG0085|consen 263 WFQNSSVILFLNKKDLLEEKILYSHLADYFPEFDGPKQDAQAAREFILKMYVDMNPDSDKIIYSHFTCATDTENIRFVFA 342 (359)
T ss_pred cccCCceEEEechhhhhhhhhhHHHHHHhCcccCCCcccHHHHHHHHHHHHHhhCCCccceeeeeeeecccchhHHHHHH
Confidence 8889999999999998541 1 1122222211 111122333345678999999999999
Q ss_pred HHHHHHHhc
Q 029517 167 WLVEVMERS 175 (192)
Q Consensus 167 ~i~~~i~~~ 175 (192)
+.-+.+...
T Consensus 343 aVkDtiLq~ 351 (359)
T KOG0085|consen 343 AVKDTILQL 351 (359)
T ss_pred HHHHHHHHh
Confidence 988877654
No 309
>COG0012 Predicted GTPase, probable translation factor [Translation, ribosomal structure and biogenesis]
Probab=98.48 E-value=1.2e-06 Score=69.65 Aligned_cols=75 Identities=21% Similarity=0.320 Sum_probs=56.0
Q ss_pred hhccccHHHHHHHHhhhhccCCCCCCCCCCCCcceEEEE----------EE-ec---CEEEEEEeCCC-------CcccH
Q 029517 12 IFTKTEFHTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGR----------IE-VS---NSKLVFWDLGG-------QPGLR 70 (192)
Q Consensus 12 ~~kst~~~~l~~~~~~~~~~~~~~~~~~~~~T~g~~~~~----------~~-~~---~~~~~i~D~~G-------~~~~~ 70 (192)
+=|||+||+|... ....+++|+.+..|..|+.+-. .. .+ ...++++|++| .+...
T Consensus 13 VGKSTlFnAlT~~----~a~~aNYPF~TIePN~Giv~v~d~rl~~L~~~~~c~~k~~~~~ve~vDIAGLV~GAs~GeGLG 88 (372)
T COG0012 13 VGKSTLFNALTKA----GAEIANYPFCTIEPNVGVVYVPDCRLDELAEIVKCPPKIRPAPVEFVDIAGLVKGASKGEGLG 88 (372)
T ss_pred CcHHHHHHHHHcC----CccccCCCcccccCCeeEEecCchHHHHHHHhcCCCCcEEeeeeEEEEecccCCCcccCCCcc
Confidence 4589999988543 2567799999999999986652 12 11 35799999999 23455
Q ss_pred HHHHHhhhcCCEEEEEEeCC
Q 029517 71 SIWEKYYEEAHAVVFVIDAA 90 (192)
Q Consensus 71 ~~~~~~~~~~d~ii~v~D~~ 90 (192)
+.....+|.+|+++.|+|+.
T Consensus 89 NkFL~~IRevdaI~hVVr~f 108 (372)
T COG0012 89 NKFLDNIREVDAIIHVVRCF 108 (372)
T ss_pred hHHHHhhhhcCeEEEEEEec
Confidence 56667789999999999986
No 310
>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity.; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.
Probab=98.47 E-value=3.6e-07 Score=69.64 Aligned_cols=112 Identities=22% Similarity=0.170 Sum_probs=58.6
Q ss_pred EEEEEeCCCCcccHHHHHHhh--------hcCCEEEEEEeCCCcccHHHH-HHHHHHHHhCCCCCCCcEEEEEeCCCCCC
Q 029517 57 KLVFWDLGGQPGLRSIWEKYY--------EEAHAVVFVIDAACPSRFEDS-KTALEKVLRNEDLQGAPLLILANKQDLPD 127 (192)
Q Consensus 57 ~~~i~D~~G~~~~~~~~~~~~--------~~~d~ii~v~D~~~~~s~~~~-~~~~~~i~~~~~~~~~piiiv~nK~Dl~~ 127 (192)
.+.++|||||.++...+...- ...-++++++|+....+.... ..++....... ..+.|.+.|+||+|+..
T Consensus 92 ~y~l~DtPGQiElf~~~~~~~~i~~~L~~~~~~~~v~LvD~~~~~~~~~f~s~~L~s~s~~~-~~~lP~vnvlsK~Dl~~ 170 (238)
T PF03029_consen 92 DYLLFDTPGQIELFTHSDSGRKIVERLQKNGRLVVVFLVDSSFCSDPSKFVSSLLLSLSIML-RLELPHVNVLSKIDLLS 170 (238)
T ss_dssp SEEEEE--SSHHHHHHSHHHHHHHHTSSS----EEEEEE-GGG-SSHHHHHHHHHHHHHHHH-HHTSEEEEEE--GGGS-
T ss_pred cEEEEeCCCCEEEEEechhHHHHHHHHhhhcceEEEEEEecccccChhhHHHHHHHHHHHHh-hCCCCEEEeeeccCccc
Confidence 789999999987655544332 335578999998644332221 12222211110 03799999999999975
Q ss_pred CC------------------------CHHHHHhHcCccccCCcceEEEEeeecCCCCHHHHHHHHHHHH
Q 029517 128 AV------------------------SADELARYLDLKKLDERVCMFEAVSGYDGFGIKESVEWLVEVM 172 (192)
Q Consensus 128 ~~------------------------~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~e~~~~i~~~i 172 (192)
.. -.+++.+.+.. .....+++++|++++.|+.+++..+.+.+
T Consensus 171 ~~~~~~l~~~~d~~~l~~~~~~~~~~l~~~i~~~l~~---~~~~~~f~pls~~~~~~~~~L~~~id~a~ 236 (238)
T PF03029_consen 171 KYLEFILEWFEDPDSLEDLLESDYKKLNEEIAELLDD---FGLVIRFIPLSSKDGEGMEELLAAIDKAN 236 (238)
T ss_dssp HHHHHHHHHHHSHHHHHHHHHT-HHHHHHHHHHHCCC---CSSS---EE-BTTTTTTHHHHHHHHHHHH
T ss_pred chhHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHhh---cCCCceEEEEECCChHHHHHHHHHHHHHh
Confidence 11 01122222220 11223899999999999999999987764
No 311
>KOG1486 consensus GTP-binding protein DRG2 (ODN superfamily) [Signal transduction mechanisms]
Probab=98.44 E-value=2.5e-06 Score=64.49 Aligned_cols=143 Identities=21% Similarity=0.166 Sum_probs=92.1
Q ss_pred HHHHHHHhhhhccCCCCCCCCCCCCcceEEEEEEecCEEEEEEeCCCCcc------c-HHHHHHhhhcCCEEEEEEeCCC
Q 029517 19 HTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPG------L-RSIWEKYYEEAHAVVFVIDAAC 91 (192)
Q Consensus 19 ~~l~~~~~~~~~~~~~~~~~~~~~T~g~~~~~~~~~~~~~~i~D~~G~~~------~-~~~~~~~~~~~d~ii~v~D~~~ 91 (192)
.||+..++..-++.+++.+++..... +.+.+++..+++.|.||.-. - ....-...+.+|.+++|.|++.
T Consensus 76 StlLs~iT~T~SeaA~yeFTTLtcIp----Gvi~y~ga~IQllDLPGIieGAsqgkGRGRQviavArtaDlilMvLDatk 151 (364)
T KOG1486|consen 76 STLLSKITSTHSEAASYEFTTLTCIP----GVIHYNGANIQLLDLPGIIEGASQGKGRGRQVIAVARTADLILMVLDATK 151 (364)
T ss_pred HHHHHHhhcchhhhhceeeeEEEeec----ceEEecCceEEEecCcccccccccCCCCCceEEEEeecccEEEEEecCCc
Confidence 36666666665666666655443333 34778889999999999321 1 1122334577999999999986
Q ss_pred cccHHHH-HHHHHHH----------------------------------------HhC----------------------
Q 029517 92 PSRFEDS-KTALEKV----------------------------------------LRN---------------------- 108 (192)
Q Consensus 92 ~~s~~~~-~~~~~~i----------------------------------------~~~---------------------- 108 (192)
.+.-.++ ...++.+ +..
T Consensus 152 ~e~qr~~le~ELe~vGiRLNk~~Pniy~k~kk~gGi~f~~T~~lT~~~ek~i~~ILheykI~Naevl~ReD~t~DdfIDv 231 (364)
T KOG1486|consen 152 SEDQREILEKELEAVGIRLNKRKPNIYFKKKKTGGISFNTTVPLTHCDEKLIYTILHEYKIHNAEVLFREDCTVDDFIDV 231 (364)
T ss_pred chhHHHHHHHHHHHhceeccCCCCCeEEEeeccCCeEEeeeeccccccHHHHHHHHHHHeeccceEEEecCCChHHHHHH
Confidence 5433321 1111111 100
Q ss_pred --CCCCCCcEEEEEeCCCCCCCCCHHHHHhHcCccccCCcceEEEEeeecCCCCHHHHHHHHHHHHHhc
Q 029517 109 --EDLQGAPLLILANKQDLPDAVSADELARYLDLKKLDERVCMFEAVSGYDGFGIKESVEWLVEVMERS 175 (192)
Q Consensus 109 --~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~e~~~~i~~~i~~~ 175 (192)
....-++.+-|-||+| +++.|++.+.+. ...-+.+|+..+-|++.+.+.+++.+.-.
T Consensus 232 i~gnr~Y~~ClYvYnKID---~vs~eevdrlAr-------~PnsvViSC~m~lnld~lle~iWe~l~L~ 290 (364)
T KOG1486|consen 232 IEGNRVYIKCLYVYNKID---QVSIEEVDRLAR-------QPNSVVISCNMKLNLDRLLERIWEELNLV 290 (364)
T ss_pred HhccceEEEEEEEeeccc---eecHHHHHHHhc-------CCCcEEEEeccccCHHHHHHHHHHHhceE
Confidence 0001256788899998 568889988887 23455689999999999999999987643
No 312
>TIGR00101 ureG urease accessory protein UreG. This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel.
Probab=98.43 E-value=1e-06 Score=65.44 Aligned_cols=103 Identities=18% Similarity=0.208 Sum_probs=64.6
Q ss_pred CEEEEEEeCCCCcccHHHHHHhhhcCCEEEEEEeCCCcccHHHHHHHHHHHHhCCCCCCCcEEEEEeCCCCCCC--CCHH
Q 029517 55 NSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDA--VSAD 132 (192)
Q Consensus 55 ~~~~~i~D~~G~~~~~~~~~~~~~~~d~ii~v~D~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~~--~~~~ 132 (192)
+....+.++.|..-..... ..+ ++.+|.|+|+.+.++... ....++ ...=++++||+|+.+. ...+
T Consensus 91 ~~D~iiIEt~G~~l~~~~~-~~l--~~~~i~vvD~~~~~~~~~--~~~~qi-------~~ad~~~~~k~d~~~~~~~~~~ 158 (199)
T TIGR00101 91 PLEMVFIESGGDNLSATFS-PEL--ADLTIFVIDVAAGDKIPR--KGGPGI-------TRSDLLVINKIDLAPMVGADLG 158 (199)
T ss_pred CCCEEEEECCCCCcccccc-hhh--hCcEEEEEEcchhhhhhh--hhHhHh-------hhccEEEEEhhhccccccccHH
Confidence 4567788999932111111 222 688999999987554321 111111 1223789999999853 2233
Q ss_pred HHHhHcCccccCCcceEEEEeeecCCCCHHHHHHHHHHHH
Q 029517 133 ELARYLDLKKLDERVCMFEAVSGYDGFGIKESVEWLVEVM 172 (192)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~e~~~~i~~~i 172 (192)
.+.+.+... ..+.+++++||++|.|++++|++|.+.+
T Consensus 159 ~~~~~~~~~---~~~~~i~~~Sa~~g~gi~el~~~i~~~~ 195 (199)
T TIGR00101 159 VMERDAKKM---RGEKPFIFTNLKTKEGLDTVIDWIEHYA 195 (199)
T ss_pred HHHHHHHHh---CCCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 434444311 2368899999999999999999998754
No 313
>KOG0461 consensus Selenocysteine-specific elongation factor [Translation, ribosomal structure and biogenesis]
Probab=98.43 E-value=2.8e-06 Score=66.90 Aligned_cols=118 Identities=18% Similarity=0.161 Sum_probs=71.1
Q ss_pred cCEEEEEEeCCCCcccHHHHHHhhhcCCEEEEEEeCCCcccHHHHHHH-HHHHHhCCCCCCCcEEEEEeCCCCCCCCCH-
Q 029517 54 SNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTA-LEKVLRNEDLQGAPLLILANKQDLPDAVSA- 131 (192)
Q Consensus 54 ~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ii~v~D~~~~~s~~~~~~~-~~~i~~~~~~~~~piiiv~nK~Dl~~~~~~- 131 (192)
....+.++|+|||....+....-.+-.|..++|+|+...-.-+.+.-+ +-++ .-...++|+||+|...+...
T Consensus 68 e~lq~tlvDCPGHasLIRtiiggaqiiDlm~lviDv~kG~QtQtAEcLiig~~------~c~klvvvinkid~lpE~qr~ 141 (522)
T KOG0461|consen 68 EQLQFTLVDCPGHASLIRTIIGGAQIIDLMILVIDVQKGKQTQTAECLIIGEL------LCKKLVVVINKIDVLPENQRA 141 (522)
T ss_pred ccceeEEEeCCCcHHHHHHHHhhhheeeeeeEEEehhcccccccchhhhhhhh------hccceEEEEeccccccchhhh
Confidence 356789999999986655554444557899999999754322222221 1111 23457888899987543211
Q ss_pred HHHHhHcC-----ccccC-CcceEEEEeeecCC----CCHHHHHHHHHHHHHhcch
Q 029517 132 DELARYLD-----LKKLD-ERVCMFEAVSGYDG----FGIKESVEWLVEVMERSKR 177 (192)
Q Consensus 132 ~~~~~~~~-----~~~~~-~~~~~~~~~Sa~~~----~gi~e~~~~i~~~i~~~~~ 177 (192)
..+.+..+ ++... ..+.+++++||+.| ++|.|+.+.|..++...++
T Consensus 142 ski~k~~kk~~KtLe~t~f~g~~PI~~vsa~~G~~~~~~i~eL~e~l~s~if~P~R 197 (522)
T KOG0461|consen 142 SKIEKSAKKVRKTLESTGFDGNSPIVEVSAADGYFKEEMIQELKEALESRIFEPKR 197 (522)
T ss_pred hHHHHHHHHHHHHHHhcCcCCCCceeEEecCCCccchhHHHHHHHHHHHhhcCCCc
Confidence 11111111 11111 23589999999999 7777777777776665443
No 314
>COG0050 TufB GTPases - translation elongation factors [Translation, ribosomal structure and biogenesis]
Probab=98.40 E-value=1.9e-06 Score=66.45 Aligned_cols=112 Identities=13% Similarity=0.051 Sum_probs=73.4
Q ss_pred CCCcceEEEEEEecCEEEEEEeCCCCcccHHHHHHhhhcCCEEEEEEeCCCcccHHHHHHHHHHHHhCCCCCCC-cEEEE
Q 029517 41 VPTVGLNIGRIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGA-PLLIL 119 (192)
Q Consensus 41 ~~T~g~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ii~v~D~~~~~s~~~~~~~~~~i~~~~~~~~~-piiiv 119 (192)
.-||...+..+.-...++..+|+|||.+|-.....-..+.|+.|+|+.+++..-.+..... ....+ -+. -++++
T Consensus 60 GITIntahveyet~~rhyahVDcPGHaDYvKNMItgAaqmDgAILVVsA~dGpmPqTrEHi-Llarq----vGvp~ivvf 134 (394)
T COG0050 60 GITINTAHVEYETANRHYAHVDCPGHADYVKNMITGAAQMDGAILVVAATDGPMPQTREHI-LLARQ----VGVPYIVVF 134 (394)
T ss_pred CceeccceeEEecCCceEEeccCCChHHHHHHHhhhHHhcCccEEEEEcCCCCCCcchhhh-hhhhh----cCCcEEEEE
Confidence 3455555555666788999999999999977665556678999999999876544332221 11112 245 56778
Q ss_pred EeCCCCCCC-----CCHHHHHhHcCccccCCcceEEEEeeecC
Q 029517 120 ANKQDLPDA-----VSADELARYLDLKKLDERVCMFEAVSGYD 157 (192)
Q Consensus 120 ~nK~Dl~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 157 (192)
+||+|+.+. .-..++++++....+..-..+++.-||..
T Consensus 135 lnK~Dmvdd~ellelVemEvreLLs~y~f~gd~~Pii~gSal~ 177 (394)
T COG0050 135 LNKVDMVDDEELLELVEMEVRELLSEYGFPGDDTPIIRGSALK 177 (394)
T ss_pred EecccccCcHHHHHHHHHHHHHHHHHcCCCCCCcceeechhhh
Confidence 899998751 11234555555444544567888888855
No 315
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=98.37 E-value=3.1e-06 Score=67.40 Aligned_cols=110 Identities=15% Similarity=0.093 Sum_probs=70.5
Q ss_pred cCEEEEEEeCCCCcccHHHHHHhhhcCCEEEEEEeCCCcccHHHHHHHHHHHHhCCCCCCCcEEEEEeCCCCCCCCCH--
Q 029517 54 SNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAVSA-- 131 (192)
Q Consensus 54 ~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ii~v~D~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~~~~~-- 131 (192)
.++.+.|.||+|...-... ....+|.+++|.++...+.+..+. ..+++. .-++|+||+|+......
T Consensus 147 ~g~d~viieT~Gv~qs~~~---i~~~aD~vlvv~~p~~gd~iq~~k---~gi~E~------aDIiVVNKaDl~~~~~a~~ 214 (332)
T PRK09435 147 AGYDVILVETVGVGQSETA---VAGMVDFFLLLQLPGAGDELQGIK---KGIMEL------ADLIVINKADGDNKTAARR 214 (332)
T ss_pred cCCCEEEEECCCCccchhH---HHHhCCEEEEEecCCchHHHHHHH---hhhhhh------hheEEeehhcccchhHHHH
Confidence 4678999999996532222 466799999998755454444433 223222 23799999998753222
Q ss_pred --HHHHhHcCcccc--CCcceEEEEeeecCCCCHHHHHHHHHHHHHhc
Q 029517 132 --DELARYLDLKKL--DERVCMFEAVSGYDGFGIKESVEWLVEVMERS 175 (192)
Q Consensus 132 --~~~~~~~~~~~~--~~~~~~~~~~Sa~~~~gi~e~~~~i~~~i~~~ 175 (192)
.++...+.+..- .....+++.+||++|.||+++.++|.+.+...
T Consensus 215 ~~~el~~~L~l~~~~~~~w~~pVi~vSA~~g~GIdeL~~~I~~~~~~l 262 (332)
T PRK09435 215 AAAEYRSALRLLRPKDPGWQPPVLTCSALEGEGIDEIWQAIEDHRAAL 262 (332)
T ss_pred HHHHHHHHHhcccccccCCCCCEEEEECCCCCCHHHHHHHHHHHHHHh
Confidence 233333331100 01125799999999999999999999876543
No 316
>PRK13796 GTPase YqeH; Provisional
Probab=98.32 E-value=3.1e-06 Score=68.57 Aligned_cols=95 Identities=21% Similarity=0.248 Sum_probs=58.8
Q ss_pred ccHHHHHHhhhcCC-EEEEEEeCCCcccHHHHHHHHHHHHhCCCCCCCcEEEEEeCCCCCC-CCCHHHHHhHcCccccCC
Q 029517 68 GLRSIWEKYYEEAH-AVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPD-AVSADELARYLDLKKLDE 145 (192)
Q Consensus 68 ~~~~~~~~~~~~~d-~ii~v~D~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~-~~~~~~~~~~~~~~~~~~ 145 (192)
.|...... +...+ .+++|+|+.+.. . .|...+.+.. .+.|+++|+||+|+.. ....+.+.+++.. ....
T Consensus 58 ~~~~~l~~-i~~~~~lIv~VVD~~D~~--~---s~~~~L~~~~--~~kpviLViNK~DLl~~~~~~~~i~~~l~~-~~k~ 128 (365)
T PRK13796 58 DFLKLLNG-IGDSDALVVNVVDIFDFN--G---SWIPGLHRFV--GNNPVLLVGNKADLLPKSVKKNKVKNWLRQ-EAKE 128 (365)
T ss_pred HHHHHHHh-hcccCcEEEEEEECccCC--C---chhHHHHHHh--CCCCEEEEEEchhhCCCccCHHHHHHHHHH-HHHh
Confidence 45554443 44455 899999997743 1 1222232221 3679999999999964 2333444444220 0012
Q ss_pred cce---EEEEeeecCCCCHHHHHHHHHHH
Q 029517 146 RVC---MFEAVSGYDGFGIKESVEWLVEV 171 (192)
Q Consensus 146 ~~~---~~~~~Sa~~~~gi~e~~~~i~~~ 171 (192)
.++ .++.+||++|.|++++++.|.+.
T Consensus 129 ~g~~~~~v~~vSAk~g~gI~eL~~~I~~~ 157 (365)
T PRK13796 129 LGLRPVDVVLISAQKGHGIDELLEAIEKY 157 (365)
T ss_pred cCCCcCcEEEEECCCCCCHHHHHHHHHHh
Confidence 222 68899999999999999999664
No 317
>TIGR00750 lao LAO/AO transport system ATPase. Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.
Probab=98.31 E-value=7.3e-06 Score=64.70 Aligned_cols=108 Identities=16% Similarity=0.091 Sum_probs=67.9
Q ss_pred cCEEEEEEeCCCCcccHHHHHHhhhcCCEEEEEEeCCCcccHHHHHHHHHHHHhCCCCCCCcEEEEEeCCCCCCCCCHHH
Q 029517 54 SNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAVSADE 133 (192)
Q Consensus 54 ~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ii~v~D~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~~~~~~~ 133 (192)
.++.+.|.||+|..... ...+..+|.++++.+.... +++......+ .++|.++++||+|+........
T Consensus 125 ~g~D~viidT~G~~~~e---~~i~~~aD~i~vv~~~~~~---~el~~~~~~l------~~~~~ivv~NK~Dl~~~~~~~~ 192 (300)
T TIGR00750 125 AGYDVIIVETVGVGQSE---VDIANMADTFVVVTIPGTG---DDLQGIKAGL------MEIADIYVVNKADGEGATNVTI 192 (300)
T ss_pred CCCCEEEEeCCCCchhh---hHHHHhhceEEEEecCCcc---HHHHHHHHHH------hhhccEEEEEcccccchhHHHH
Confidence 46889999999954221 2356778999888654433 3333333333 3577899999999976433221
Q ss_pred HHhHc-----Cc-cccCCcceEEEEeeecCCCCHHHHHHHHHHHHH
Q 029517 134 LARYL-----DL-KKLDERVCMFEAVSGYDGFGIKESVEWLVEVME 173 (192)
Q Consensus 134 ~~~~~-----~~-~~~~~~~~~~~~~Sa~~~~gi~e~~~~i~~~i~ 173 (192)
....+ .+ ........+++++||+++.|+++++++|.+...
T Consensus 193 ~~~~~~~~l~~l~~~~~~~~~~v~~iSA~~g~Gi~~L~~~i~~~~~ 238 (300)
T TIGR00750 193 ARLMLALALEEIRRREDGWRPPVLTTSAVEGRGIDELWDAIEEHKT 238 (300)
T ss_pred HHHHHHHHHhhccccccCCCCCEEEEEccCCCCHHHHHHHHHHHHH
Confidence 11111 00 000111246899999999999999999988644
No 318
>COG0480 FusA Translation elongation factors (GTPases) [Translation, ribosomal structure and biogenesis]
Probab=98.31 E-value=5.3e-06 Score=71.89 Aligned_cols=80 Identities=16% Similarity=0.157 Sum_probs=60.2
Q ss_pred CcceEEEEEEec-CEEEEEEeCCCCcccHHHHHHhhhcCCEEEEEEeCCCcccHHHHHHHHHHHHhCCCCCCCcEEEEEe
Q 029517 43 TVGLNIGRIEVS-NSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILAN 121 (192)
Q Consensus 43 T~g~~~~~~~~~-~~~~~i~D~~G~~~~~~~~~~~~~~~d~ii~v~D~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~n 121 (192)
|+...-.++... +..++++|||||-+|.......++-+|+++.|+|+...-..+.-.-| ++..+ .++|.++++|
T Consensus 62 TI~saa~s~~~~~~~~iNlIDTPGHVDFt~EV~rslrvlDgavvVvdaveGV~~QTEtv~-rqa~~----~~vp~i~fiN 136 (697)
T COG0480 62 TITSAATTLFWKGDYRINLIDTPGHVDFTIEVERSLRVLDGAVVVVDAVEGVEPQTETVW-RQADK----YGVPRILFVN 136 (697)
T ss_pred EEeeeeeEEEEcCceEEEEeCCCCccccHHHHHHHHHhhcceEEEEECCCCeeecHHHHH-HHHhh----cCCCeEEEEE
Confidence 333333345666 49999999999999999999999999999999999866444432233 22222 3699999999
Q ss_pred CCCCCC
Q 029517 122 KQDLPD 127 (192)
Q Consensus 122 K~Dl~~ 127 (192)
|+|...
T Consensus 137 KmDR~~ 142 (697)
T COG0480 137 KMDRLG 142 (697)
T ss_pred Cccccc
Confidence 999865
No 319
>PRK09601 GTP-binding protein YchF; Reviewed
Probab=98.29 E-value=9.1e-06 Score=65.33 Aligned_cols=74 Identities=23% Similarity=0.228 Sum_probs=45.6
Q ss_pred hccccHHHHHHHHhhhhccCCCCCCCCCCCCcceEEEEEE--------e-----cCEEEEEEeCCCCcc-------cHHH
Q 029517 13 FTKTEFHTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIE--------V-----SNSKLVFWDLGGQPG-------LRSI 72 (192)
Q Consensus 13 ~kst~~~~l~~~~~~~~~~~~~~~~~~~~~T~g~~~~~~~--------~-----~~~~~~i~D~~G~~~-------~~~~ 72 (192)
=|||+||+|.+.- +.+.+++.++..|..|.-...-. . -..++++.|+||... ....
T Consensus 14 GKSTLfnaLt~~~----~~v~nypftTi~p~~G~~~v~d~r~~~l~~~~~p~~~~~a~i~lvD~pGL~~~a~~g~glg~~ 89 (364)
T PRK09601 14 GKSTLFNALTKAG----AEAANYPFCTIEPNVGVVPVPDPRLDKLAEIVKPKKIVPATIEFVDIAGLVKGASKGEGLGNQ 89 (364)
T ss_pred CHHHHHHHHhCCC----CeecccccccccceEEEEEeccccchhhHHhcCCccccCceEEEEECCCCCCCCChHHHHHHH
Confidence 3888888886643 34556666665665554322110 0 013699999999431 1223
Q ss_pred HHHhhhcCCEEEEEEeCC
Q 029517 73 WEKYYEEAHAVVFVIDAA 90 (192)
Q Consensus 73 ~~~~~~~~d~ii~v~D~~ 90 (192)
....++.||++++|+|+.
T Consensus 90 fL~~i~~aD~li~VVd~f 107 (364)
T PRK09601 90 FLANIREVDAIVHVVRCF 107 (364)
T ss_pred HHHHHHhCCEEEEEEeCC
Confidence 344578999999999984
No 320
>TIGR00991 3a0901s02IAP34 GTP-binding protein (Chloroplast Envelope Protein Translocase).
Probab=98.26 E-value=1.5e-05 Score=62.70 Aligned_cols=106 Identities=8% Similarity=0.039 Sum_probs=57.2
Q ss_pred hccccHHHHHHHHhhhhccCCCCCCCCCCCCcceEEEEEEecCEEEEEEeCCCCcccHHHH---HHhhh------cCCEE
Q 029517 13 FTKTEFHTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPGLRSIW---EKYYE------EAHAV 83 (192)
Q Consensus 13 ~kst~~~~l~~~~~~~~~~~~~~~~~~~~~T~g~~~~~~~~~~~~~~i~D~~G~~~~~~~~---~~~~~------~~d~i 83 (192)
=|||++|+|+++.....+. .....+.++. ......+.++.++||||..+..... ...++ ..|++
T Consensus 50 GKSSliNsIlG~~v~~vs~---f~s~t~~~~~----~~~~~~G~~l~VIDTPGL~d~~~~~e~~~~~ik~~l~~~g~DvV 122 (313)
T TIGR00991 50 GKSSTVNSIIGERIATVSA---FQSEGLRPMM----VSRTRAGFTLNIIDTPGLIEGGYINDQAVNIIKRFLLGKTIDVL 122 (313)
T ss_pred CHHHHHHHHhCCCcccccC---CCCcceeEEE----EEEEECCeEEEEEECCCCCchHHHHHHHHHHHHHHhhcCCCCEE
Confidence 3899999999875432221 1112222221 1223467899999999976432211 11222 58999
Q ss_pred EEEEeCCCcccHHHH-HHHHHHHHhCC-CCCCCcEEEEEeCCCCC
Q 029517 84 VFVIDAACPSRFEDS-KTALEKVLRNE-DLQGAPLLILANKQDLP 126 (192)
Q Consensus 84 i~v~D~~~~~s~~~~-~~~~~~i~~~~-~~~~~piiiv~nK~Dl~ 126 (192)
++|...... .+... ...++.+.... ...-.+.+++.|+.|..
T Consensus 123 LyV~rLD~~-R~~~~DkqlLk~Iqe~FG~~iw~~~IVVfTh~d~~ 166 (313)
T TIGR00991 123 LYVDRLDAY-RVDTLDGQVIRAITDSFGKDIWRKSLVVLTHAQFS 166 (313)
T ss_pred EEEeccCcc-cCCHHHHHHHHHHHHHhhhhhhccEEEEEECCccC
Confidence 999654322 12111 12333333321 11235799999999965
No 321
>PRK01889 GTPase RsgA; Reviewed
Probab=98.26 E-value=8.5e-06 Score=65.80 Aligned_cols=84 Identities=23% Similarity=0.264 Sum_probs=59.1
Q ss_pred hhcCCEEEEEEeCCCcccHHHHHHHHHHHHhCCCCCCCcEEEEEeCCCCCCCCCHHHHHhHcCccccCCcceEEEEeeec
Q 029517 77 YEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAVSADELARYLDLKKLDERVCMFEAVSGY 156 (192)
Q Consensus 77 ~~~~d~ii~v~D~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 156 (192)
..++|.+++|+++..+-....+..++..+... ++|.++|+||+||.+.. .+....+... ..+++++.+|++
T Consensus 110 aANvD~vliV~s~~p~~~~~~ldr~L~~a~~~----~i~piIVLNK~DL~~~~-~~~~~~~~~~----~~g~~Vi~vSa~ 180 (356)
T PRK01889 110 AANVDTVFIVCSLNHDFNLRRIERYLALAWES----GAEPVIVLTKADLCEDA-EEKIAEVEAL----APGVPVLAVSAL 180 (356)
T ss_pred EEeCCEEEEEEecCCCCChhHHHHHHHHHHHc----CCCEEEEEEChhcCCCH-HHHHHHHHHh----CCCCcEEEEECC
Confidence 47899999999997555555555665554443 67778999999997531 1122222221 336889999999
Q ss_pred CCCCHHHHHHHHH
Q 029517 157 DGFGIKESVEWLV 169 (192)
Q Consensus 157 ~~~gi~e~~~~i~ 169 (192)
++.|++++..++.
T Consensus 181 ~g~gl~~L~~~L~ 193 (356)
T PRK01889 181 DGEGLDVLAAWLS 193 (356)
T ss_pred CCccHHHHHHHhh
Confidence 9999999988874
No 322
>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]
Probab=98.17 E-value=2.1e-05 Score=65.68 Aligned_cols=144 Identities=19% Similarity=0.201 Sum_probs=88.9
Q ss_pred hhccccHHHHHHHHhhhhccCCCCCCCCCCCCcceEEEEEEecCEEEEEEeCCCCcccHHHHHHhhhcCCEEEEEEeCCC
Q 029517 12 IFTKTEFHTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAAC 91 (192)
Q Consensus 12 ~~kst~~~~l~~~~~~~~~~~~~~~~~~~~~T~g~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ii~v~D~~~ 91 (192)
--||.+++++++|...- ++ ..+..+...++.....+..-.+.+.|.+-. ........- ..||++.++||+++
T Consensus 436 ~GKs~lL~sflgr~~~~----~~--~~~~~~~~avn~v~~~g~~k~LiL~ei~~~-~~~~l~~ke-~~cDv~~~~YDsS~ 507 (625)
T KOG1707|consen 436 CGKSALLQSFLGRSMSD----NN--TGTTKPRYAVNSVEVKGQQKYLILREIGED-DQDFLTSKE-AACDVACLVYDSSN 507 (625)
T ss_pred CchHHHHHHHhcccccc----cc--ccCCCCceeeeeeeeccccceEEEeecCcc-ccccccCcc-ceeeeEEEecccCC
Confidence 34788888998886651 11 111122222222233455556777777764 222222111 67999999999999
Q ss_pred cccHHHHHHHHHHHHhCCCCCCCcEEEEEeCCCCCC-----CCCHHHHHhHcCccccCCcceEEEEeeecCCCCHHHHHH
Q 029517 92 PSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPD-----AVSADELARYLDLKKLDERVCMFEAVSGYDGFGIKESVE 166 (192)
Q Consensus 92 ~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~e~~~ 166 (192)
+.+|+-+....+.-... ...|+++|+.|+|+.+ .+..++.....++ -+-+.+|.+.... .++|.
T Consensus 508 p~sf~~~a~v~~~~~~~---~~~Pc~~va~K~dlDe~~Q~~~iqpde~~~~~~i-------~~P~~~S~~~~~s-~~lf~ 576 (625)
T KOG1707|consen 508 PRSFEYLAEVYNKYFDL---YKIPCLMVATKADLDEVPQRYSIQPDEFCRQLGL-------PPPIHISSKTLSS-NELFI 576 (625)
T ss_pred chHHHHHHHHHHHhhhc---cCCceEEEeeccccchhhhccCCChHHHHHhcCC-------CCCeeeccCCCCC-chHHH
Confidence 99998877765554433 5799999999999976 2344555555542 1223456664333 89999
Q ss_pred HHHHHHHh
Q 029517 167 WLVEVMER 174 (192)
Q Consensus 167 ~i~~~i~~ 174 (192)
+|......
T Consensus 577 kL~~~A~~ 584 (625)
T KOG1707|consen 577 KLATMAQY 584 (625)
T ss_pred HHHHhhhC
Confidence 99886653
No 323
>KOG0410 consensus Predicted GTP binding protein [General function prediction only]
Probab=98.14 E-value=5.2e-06 Score=64.86 Aligned_cols=141 Identities=18% Similarity=0.270 Sum_probs=83.9
Q ss_pred ccccHHHHHHHHhhhhccCCCCCCCCCCCCcceEEEEEEec-CEEEEEEeCCCC---------cccHHHHHHhhhcCCEE
Q 029517 14 TKTEFHTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVS-NSKLVFWDLGGQ---------PGLRSIWEKYYEEAHAV 83 (192)
Q Consensus 14 kst~~~~l~~~~~~~~~~~~~~~~~~~~~T~g~~~~~~~~~-~~~~~i~D~~G~---------~~~~~~~~~~~~~~d~i 83 (192)
|||++++|. .+. -++.++...|....-.....+ +..+.+-||.|. ..|+...+ .+..+|.+
T Consensus 191 KsTLikaLT----~Aa----l~p~drLFATLDpT~h~a~Lpsg~~vlltDTvGFisdLP~~LvaAF~ATLe-eVaeadll 261 (410)
T KOG0410|consen 191 KSTLIKALT----KAA----LYPNDRLFATLDPTLHSAHLPSGNFVLLTDTVGFISDLPIQLVAAFQATLE-EVAEADLL 261 (410)
T ss_pred HHHHHHHHH----hhh----cCccchhheeccchhhhccCCCCcEEEEeechhhhhhCcHHHHHHHHHHHH-HHhhcceE
Confidence 566666555 221 233445555554443333322 457888999993 23444443 46789999
Q ss_pred EEEEeCCCcccHHHHHHHHHHHHhCCCCCCCc----EEEEEeCCCCCCCCCHHHHHhHcCccccCCcceEEEEeeecCCC
Q 029517 84 VFVIDAACPSRFEDSKTALEKVLRNEDLQGAP----LLILANKQDLPDAVSADELARYLDLKKLDERVCMFEAVSGYDGF 159 (192)
Q Consensus 84 i~v~D~~~~~s~~~~~~~~~~i~~~~~~~~~p----iiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 159 (192)
+.|+|++.|+ .+.-..-+...+.....++.| ++=|-||+|.......++ .. ..+.+||++|+
T Consensus 262 lHvvDiShP~-ae~q~e~Vl~vL~~igv~~~pkl~~mieVdnkiD~e~~~~e~E-----------~n--~~v~isaltgd 327 (410)
T KOG0410|consen 262 LHVVDISHPN-AEEQRETVLHVLNQIGVPSEPKLQNMIEVDNKIDYEEDEVEEE-----------KN--LDVGISALTGD 327 (410)
T ss_pred EEEeecCCcc-HHHHHHHHHHHHHhcCCCcHHHHhHHHhhccccccccccCccc-----------cC--CccccccccCc
Confidence 9999999886 333334444444432223334 455677777654221111 11 15569999999
Q ss_pred CHHHHHHHHHHHHHhcch
Q 029517 160 GIKESVEWLVEVMERSKR 177 (192)
Q Consensus 160 gi~e~~~~i~~~i~~~~~ 177 (192)
|++++.+.+-..+.....
T Consensus 328 gl~el~~a~~~kv~~~t~ 345 (410)
T KOG0410|consen 328 GLEELLKAEETKVASETT 345 (410)
T ss_pred cHHHHHHHHHHHhhhhhe
Confidence 999999999888776643
No 324
>cd01853 Toc34_like Toc34-like (Translocon at the Outer-envelope membrane of Chloroplasts). This family contains several Toc proteins, including Toc34, Toc33, Toc120, Toc159, Toc86, Toc125, and Toc90. The Toc complex at the outer envelope membrane of chloroplasts is a molecular machine of ~500 kDa that contains a single Toc159 protein, four Toc75 molecules, and four or five copies of Toc34. Toc64 and Toc12 are associated with the translocon, but do not appear to be part of the core complex. The Toc translocon initiates the import of nuclear-encoded preproteins from the cytosol into the organelle. Toc34 and Toc159 are both GTPases, while Toc75 is a beta-barrel integral membrane protein. Toc159 is equally distributed between a soluble cytoplasmic form and a membrane-inserted form, suggesting that assembly of the Toc complex is dynamic. Toc34 and Toc75 act sequentially to mediate docking and insertion of Toc159 resulting in assembly of the functional translocon.
Probab=98.12 E-value=4.7e-05 Score=58.50 Aligned_cols=106 Identities=12% Similarity=0.068 Sum_probs=58.5
Q ss_pred ccccHHHHHHHHhhhhccCCCCCCCCCCCCcceEEEEEEecCEEEEEEeCCCCcccH--H--------HHHHhhh--cCC
Q 029517 14 TKTEFHTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPGLR--S--------IWEKYYE--EAH 81 (192)
Q Consensus 14 kst~~~~l~~~~~~~~~~~~~~~~~~~~~T~g~~~~~~~~~~~~~~i~D~~G~~~~~--~--------~~~~~~~--~~d 81 (192)
|||++|+|++.-..... . ....|...........+.++.+|||||..... . ....++. ..+
T Consensus 44 KSSliNaLlg~~~~~v~---~----~~~~T~~~~~~~~~~~g~~i~vIDTPGl~~~~~~~~~~~~~~~~I~~~l~~~~id 116 (249)
T cd01853 44 KSSTINSIFGERKAATS---A----FQSETLRVREVSGTVDGFKLNIIDTPGLLESVMDQRVNRKILSSIKRYLKKKTPD 116 (249)
T ss_pred HHHHHHHHhCCCCcccC---C----CCCceEEEEEEEEEECCeEEEEEECCCcCcchhhHHHHHHHHHHHHHHHhccCCC
Confidence 89999999876432111 1 11233333344444567889999999965431 1 1223443 468
Q ss_pred EEEEEEeCCCcc-cHHHHHHHHHHHHhCCC-CCCCcEEEEEeCCCCCC
Q 029517 82 AVVFVIDAACPS-RFEDSKTALEKVLRNED-LQGAPLLILANKQDLPD 127 (192)
Q Consensus 82 ~ii~v~D~~~~~-s~~~~~~~~~~i~~~~~-~~~~piiiv~nK~Dl~~ 127 (192)
++++|..++... +... ...++.+.+... ..-.++++|.||+|...
T Consensus 117 vIL~V~rlD~~r~~~~d-~~llk~I~e~fG~~i~~~~ivV~T~~d~~~ 163 (249)
T cd01853 117 VVLYVDRLDMYRRDYLD-LPLLRAITDSFGPSIWRNAIVVLTHAASSP 163 (249)
T ss_pred EEEEEEcCCCCCCCHHH-HHHHHHHHHHhChhhHhCEEEEEeCCccCC
Confidence 888887554321 1221 133333333211 11257999999999854
No 325
>KOG3886 consensus GTP-binding protein [Signal transduction mechanisms]
Probab=98.11 E-value=1.4e-05 Score=59.76 Aligned_cols=118 Identities=22% Similarity=0.366 Sum_probs=77.1
Q ss_pred CCCCCCcceEEEEEEec-CEEEEEEeCCCCcccHH-----HHHHhhhcCCEEEEEEeCCCccc---HHHHHHHHHHHHhC
Q 029517 38 DRIVPTVGLNIGRIEVS-NSKLVFWDLGGQPGLRS-----IWEKYYEEAHAVVFVIDAACPSR---FEDSKTALEKVLRN 108 (192)
Q Consensus 38 ~~~~~T~g~~~~~~~~~-~~~~~i~D~~G~~~~~~-----~~~~~~~~~d~ii~v~D~~~~~s---~~~~~~~~~~i~~~ 108 (192)
....+||.+.+.++.+- ...+.+||.+|++.+.. .....+++.+++++|+|++..+- +...+.-++.+++.
T Consensus 34 ~rlg~tidveHsh~RflGnl~LnlwDcGgqe~fmen~~~~q~d~iF~nV~vli~vFDves~e~~~D~~~yqk~Le~ll~~ 113 (295)
T KOG3886|consen 34 RRLGATIDVEHSHVRFLGNLVLNLWDCGGQEEFMENYLSSQEDNIFRNVQVLIYVFDVESREMEKDFHYYQKCLEALLQN 113 (295)
T ss_pred hccCCcceeeehhhhhhhhheeehhccCCcHHHHHHHHhhcchhhheeheeeeeeeeccchhhhhhHHHHHHHHHHHHhc
Confidence 45578888888887654 58999999999985433 34557889999999999985532 22333334455555
Q ss_pred CCCCCCcEEEEEeCCCCCCCCCHHHHHhHcC--cccc-CCcceEEEEeeecC
Q 029517 109 EDLQGAPLLILANKQDLPDAVSADELARYLD--LKKL-DERVCMFEAVSGYD 157 (192)
Q Consensus 109 ~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~~--~~~~-~~~~~~~~~~Sa~~ 157 (192)
. +...+.+..+|.|+......+++-+.-+ +..+ ...++.++++|..+
T Consensus 114 S--P~AkiF~l~hKmDLv~~d~r~~if~~r~~~l~~~s~~~~~~~f~TsiwD 163 (295)
T KOG3886|consen 114 S--PEAKIFCLLHKMDLVQEDARELIFQRRKEDLRRLSRPLECKCFPTSIWD 163 (295)
T ss_pred C--CcceEEEEEeechhcccchHHHHHHHHHHHHHHhcccccccccccchhh
Confidence 3 5778999999999976433333222111 1111 13457778887755
No 326
>smart00010 small_GTPase Small GTPase of the Ras superfamily; ill-defined subfamily. SMART predicts Ras-like small GTPases of the ARF, RAB, RAN, RAS, and SAR subfamilies. Others that could not be classified in this way are predicted to be members of the small GTPase superfamily without predictions of the subfamily.
Probab=98.11 E-value=1.1e-05 Score=54.55 Aligned_cols=75 Identities=17% Similarity=0.163 Sum_probs=53.0
Q ss_pred HHHHhhhcCCEEEEEEeCCCcccHHHHHHHHHHHHhCCCCCCCcEEEEEeCCCCCCC--CCHHHHHhHcCccccCCcceE
Q 029517 72 IWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDA--VSADELARYLDLKKLDERVCM 149 (192)
Q Consensus 72 ~~~~~~~~~d~ii~v~D~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~ 149 (192)
....+.+.++++++||+.++..+++.+ |...+..... .+.|.++++||.|+.+. ...++ ..+
T Consensus 39 ~~~~~~~s~~~~~~v~~~~~~~s~~~~--~~~~i~~~~k-~dl~~~~~~nk~dl~~~~~~~~~~-------------~~~ 102 (124)
T smart00010 39 YDPTSYESFDVVLQCWRVDDRDSADNK--NVPEVLVGNK-SDLPILVGGNRDVLEEERQVATEE-------------GLE 102 (124)
T ss_pred ccccccCCCCEEEEEEEccCHHHHHHH--hHHHHHhcCC-CCCcEEEEeechhhHhhCcCCHHH-------------HHH
Confidence 334567889999999999998888765 6666655432 57899999999997432 11111 234
Q ss_pred EEEeeecCCCCHH
Q 029517 150 FEAVSGYDGFGIK 162 (192)
Q Consensus 150 ~~~~Sa~~~~gi~ 162 (192)
++++|+++|.|+.
T Consensus 103 ~~~~s~~~~~~~~ 115 (124)
T smart00010 103 FAETSAKTPEEGE 115 (124)
T ss_pred HHHHhCCCcchhh
Confidence 5678999999984
No 327
>TIGR00073 hypB hydrogenase accessory protein HypB. HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.
Probab=98.10 E-value=1e-05 Score=60.36 Aligned_cols=102 Identities=19% Similarity=0.158 Sum_probs=60.2
Q ss_pred CEEEEEEeCCCCcccHHHHHHhhhcCCEEEEEEeCCCcccHHHHHHHHHHHHhCCCCCCCcEEEEEeCCCCCCCC--CHH
Q 029517 55 NSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAV--SAD 132 (192)
Q Consensus 55 ~~~~~i~D~~G~~~~~~~~~~~~~~~d~ii~v~D~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~~~--~~~ 132 (192)
+..+.+++|.|.-.... .+-...+..+.|+|+.+.+.... ... . ....|.++++||+|+.+.. ..+
T Consensus 102 ~~d~IiIEt~G~l~~~~---~~~~~~~~~i~Vvd~~~~d~~~~--~~~-~------~~~~a~iiv~NK~Dl~~~~~~~~~ 169 (207)
T TIGR00073 102 DIDLLFIENVGNLVCPA---DFDLGEHMRVVLLSVTEGDDKPL--KYP-G------MFKEADLIVINKADLAEAVGFDVE 169 (207)
T ss_pred CCCEEEEecCCCcCCCc---ccccccCeEEEEEecCcccchhh--hhH-h------HHhhCCEEEEEHHHccccchhhHH
Confidence 34677777777211000 11123455566777765432111 110 1 1246789999999997532 233
Q ss_pred HHHhHcCccccCCcceEEEEeeecCCCCHHHHHHHHHHH
Q 029517 133 ELARYLDLKKLDERVCMFEAVSGYDGFGIKESVEWLVEV 171 (192)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~e~~~~i~~~ 171 (192)
+..+.+.. . ....+++++||++|.|++++++++.+.
T Consensus 170 ~~~~~l~~--~-~~~~~i~~~Sa~~g~gv~~l~~~i~~~ 205 (207)
T TIGR00073 170 KMKADAKK--I-NPEAEIILMSLKTGEGLDEWLEFLEGQ 205 (207)
T ss_pred HHHHHHHH--h-CCCCCEEEEECCCCCCHHHHHHHHHHh
Confidence 44444331 1 235789999999999999999999774
No 328
>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]
Probab=98.07 E-value=4.7e-05 Score=58.40 Aligned_cols=116 Identities=22% Similarity=0.262 Sum_probs=71.3
Q ss_pred CEEEEEEeCCCCc-cc-----HHHHHHhh--hcCCEEEEEEeCC---CcccHHHHHHHHHHHHhCCCCCCCcEEEEEeCC
Q 029517 55 NSKLVFWDLGGQP-GL-----RSIWEKYY--EEAHAVVFVIDAA---CPSRFEDSKTALEKVLRNEDLQGAPLLILANKQ 123 (192)
Q Consensus 55 ~~~~~i~D~~G~~-~~-----~~~~~~~~--~~~d~ii~v~D~~---~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~ 123 (192)
.....++|||||- .| .......+ ....++++|+|.. ++.+|-.--.+--.++.. ...|++++.||.
T Consensus 115 ~~~~~liDTPGQIE~FtWSAsGsIIte~lass~ptvv~YvvDt~rs~~p~tFMSNMlYAcSilyk---tklp~ivvfNK~ 191 (366)
T KOG1532|consen 115 EFDYVLIDTPGQIEAFTWSASGSIITETLASSFPTVVVYVVDTPRSTSPTTFMSNMLYACSILYK---TKLPFIVVFNKT 191 (366)
T ss_pred ccCEEEEcCCCceEEEEecCCccchHhhHhhcCCeEEEEEecCCcCCCchhHHHHHHHHHHHHHh---ccCCeEEEEecc
Confidence 4678999999963 22 11111222 2357789999974 444554433333334333 578999999999
Q ss_pred CCCCCC-------CHHHHHhHcCc-c---------------ccCCcceEEEEeeecCCCCHHHHHHHHHHHHH
Q 029517 124 DLPDAV-------SADELARYLDL-K---------------KLDERVCMFEAVSGYDGFGIKESVEWLVEVME 173 (192)
Q Consensus 124 Dl~~~~-------~~~~~~~~~~~-~---------------~~~~~~~~~~~~Sa~~~~gi~e~~~~i~~~i~ 173 (192)
|+.+.. +.|.+++.++. . .-...+...+-+||.+|.|.+++|.++.+.+.
T Consensus 192 Dv~d~~fa~eWm~DfE~FqeAl~~~~~~y~s~l~~SmSL~leeFY~~lrtv~VSs~tG~G~ddf~~av~~~vd 264 (366)
T KOG1532|consen 192 DVSDSEFALEWMTDFEAFQEALNEAESSYMSNLTRSMSLMLEEFYRSLRTVGVSSVTGEGFDDFFTAVDESVD 264 (366)
T ss_pred cccccHHHHHHHHHHHHHHHHHHhhccchhHHhhhhHHHHHHHHHhhCceEEEecccCCcHHHHHHHHHHHHH
Confidence 997621 12222222220 0 00134678899999999999999999877654
No 329
>PF04548 AIG1: AIG1 family; InterPro: IPR006703 This entry represents a domain found in Arabidopsis protein AIG1 which appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 (avrRpt2-induced gene) exhibits RPS2- and avrRpt2-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2 []. The domain is also apparently found in a number of mammalian proteins, for example the rat immune-associated nucleotide 4 protein. ; GO: 0005525 GTP binding; PDB: 3LXX_A 3BB4_A 3DEF_A 3BB3_A 2J3E_A 3V70_B 3BB1_A 1H65_B 2XTP_A 3P1J_C ....
Probab=98.06 E-value=2e-05 Score=59.13 Aligned_cols=150 Identities=13% Similarity=0.071 Sum_probs=80.0
Q ss_pred ccccHHHHHHHHhhhhccCCCCCCCCCCCCcceEEEEEEecCEEEEEEeCCCCccc-------HHHHHH----hhhcCCE
Q 029517 14 TKTEFHTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPGL-------RSIWEK----YYEEAHA 82 (192)
Q Consensus 14 kst~~~~l~~~~~~~~~~~~~~~~~~~~~T~g~~~~~~~~~~~~~~i~D~~G~~~~-------~~~~~~----~~~~~d~ 82 (192)
|||+.|+|+++-.. .........|..+........+..+.|+||||..+. ...... ...+.++
T Consensus 13 KSs~~N~ilg~~~f------~~~~~~~~~t~~~~~~~~~~~g~~v~VIDTPGl~d~~~~~~~~~~~i~~~l~~~~~g~ha 86 (212)
T PF04548_consen 13 KSSLGNSILGKEVF------KSGSSAKSVTQECQKYSGEVDGRQVTVIDTPGLFDSDGSDEEIIREIKRCLSLCSPGPHA 86 (212)
T ss_dssp HHHHHHHHHTSS-S------S--TTTSS--SS-EEEEEEETTEEEEEEE--SSEETTEEHHHHHHHHHHHHHHTTT-ESE
T ss_pred HHHHHHHHhcccce------eeccccCCcccccceeeeeecceEEEEEeCCCCCCCcccHHHHHHHHHHHHHhccCCCeE
Confidence 78999999876442 111112234555555566777899999999994321 111222 2345899
Q ss_pred EEEEEeCCCcc-cHHHHHHHHHHHHhCCCCCCCcEEEEEeCCCCCCCCCHHH---------HHhHcCccccCCcceEEEE
Q 029517 83 VVFVIDAACPS-RFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAVSADE---------LARYLDLKKLDERVCMFEA 152 (192)
Q Consensus 83 ii~v~D~~~~~-s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~~~~~~~---------~~~~~~~~~~~~~~~~~~~ 152 (192)
+++|+...... .-..+.+++..+.... .-..++++.+..|.......++ +.+.++ ..+-.++.
T Consensus 87 ~llVi~~~r~t~~~~~~l~~l~~~FG~~--~~k~~ivvfT~~d~~~~~~~~~~l~~~~~~~l~~li~-----~c~~R~~~ 159 (212)
T PF04548_consen 87 FLLVIPLGRFTEEDREVLELLQEIFGEE--IWKHTIVVFTHADELEDDSLEDYLKKESNEALQELIE-----KCGGRYHV 159 (212)
T ss_dssp EEEEEETTB-SHHHHHHHHHHHHHHCGG--GGGGEEEEEEEGGGGTTTTHHHHHHHHHHHHHHHHHH-----HTTTCEEE
T ss_pred EEEEEecCcchHHHHHHHHHHHHHccHH--HHhHhhHHhhhccccccccHHHHHhccCchhHhHHhh-----hcCCEEEE
Confidence 99999987321 1123333444443321 1246888888888665433222 222222 33445555
Q ss_pred eeec------CCCCHHHHHHHHHHHHHhcc
Q 029517 153 VSGY------DGFGIKESVEWLVEVMERSK 176 (192)
Q Consensus 153 ~Sa~------~~~gi~e~~~~i~~~i~~~~ 176 (192)
.+.+ ....+.++++.+.+.+.++.
T Consensus 160 f~n~~~~~~~~~~qv~~Ll~~ie~mv~~n~ 189 (212)
T PF04548_consen 160 FNNKTKDKEKDESQVSELLEKIEEMVQENG 189 (212)
T ss_dssp CCTTHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred EeccccchhhhHHHHHHHHHHHHHHHHHcC
Confidence 5555 33458888888877776653
No 330
>KOG0466 consensus Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=98.04 E-value=4.3e-06 Score=64.84 Aligned_cols=115 Identities=16% Similarity=0.150 Sum_probs=72.7
Q ss_pred EEEEEEeCCCCcccHHHHHHhhhcCCEEEEEEeCCCcccHHHHHHHHHHHHhCCCCCCCcEEEEEeCCCCCCC----CCH
Q 029517 56 SKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDA----VSA 131 (192)
Q Consensus 56 ~~~~i~D~~G~~~~~~~~~~~~~~~d~ii~v~D~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~~----~~~ 131 (192)
.++.|+|+|||+-.......-..-.|++++++....+..-....+-+..+.-. .-..++++-||+|+..+ ...
T Consensus 125 RHVSfVDCPGHDiLMaTMLnGaAvmDaalLlIA~NEsCPQPQTsEHLaaveiM---~LkhiiilQNKiDli~e~~A~eq~ 201 (466)
T KOG0466|consen 125 RHVSFVDCPGHDILMATMLNGAAVMDAALLLIAGNESCPQPQTSEHLAAVEIM---KLKHIIILQNKIDLIKESQALEQH 201 (466)
T ss_pred EEEEeccCCchHHHHHHHhcchHHhhhhhhhhhcCCCCCCCchhhHHHHHHHh---hhceEEEEechhhhhhHHHHHHHH
Confidence 47999999999854433222222357777777654221111111222222211 23679999999999762 334
Q ss_pred HHHHhHcCccccCCcceEEEEeeecCCCCHHHHHHHHHHHHHhc
Q 029517 132 DELARYLDLKKLDERVCMFEAVSGYDGFGIKESVEWLVEVMERS 175 (192)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~e~~~~i~~~i~~~ 175 (192)
+++..+.+.. ...+.+++++||.-++||+-+.+.|++.+.--
T Consensus 202 e~I~kFi~~t--~ae~aPiiPisAQlkyNId~v~eyivkkIPvP 243 (466)
T KOG0466|consen 202 EQIQKFIQGT--VAEGAPIIPISAQLKYNIDVVCEYIVKKIPVP 243 (466)
T ss_pred HHHHHHHhcc--ccCCCceeeehhhhccChHHHHHHHHhcCCCC
Confidence 5566666521 12377999999999999999999999987643
No 331
>KOG0468 consensus U5 snRNP-specific protein [Translation, ribosomal structure and biogenesis]
Probab=98.02 E-value=1.3e-05 Score=68.01 Aligned_cols=70 Identities=16% Similarity=0.226 Sum_probs=54.9
Q ss_pred EecCEEEEEEeCCCCcccHHHHHHhhhcCCEEEEEEeCCCcccHHHHHHHHHHHHhCCCCCCCcEEEEEeCCCCC
Q 029517 52 EVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLP 126 (192)
Q Consensus 52 ~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ii~v~D~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~ 126 (192)
+++.+-+++.|||||-.|.......++.+|++++|+|+...-.+..-+ .++...+ .+.|+++|+||+|+.
T Consensus 193 ~~KS~l~nilDTPGHVnF~DE~ta~l~~sDgvVlvvDv~EGVmlntEr-~ikhaiq----~~~~i~vviNKiDRL 262 (971)
T KOG0468|consen 193 KGKSYLMNILDTPGHVNFSDETTASLRLSDGVVLVVDVAEGVMLNTER-IIKHAIQ----NRLPIVVVINKVDRL 262 (971)
T ss_pred cCceeeeeeecCCCcccchHHHHHHhhhcceEEEEEEcccCceeeHHH-HHHHHHh----ccCcEEEEEehhHHH
Confidence 345678999999999999998888999999999999998776665422 2222222 368999999999963
No 332
>PF05049 IIGP: Interferon-inducible GTPase (IIGP); InterPro: IPR007743 Interferon-inducible GTPase (IIGP) is thought to play a role in in intracellular defence. IIGP is predominantly associated with the Golgi apparatus and also localizes to the endoplasmic reticulum and exerts a distinct role in IFN-induced intracellular membrane trafficking or processing [].; GO: 0005525 GTP binding, 0016817 hydrolase activity, acting on acid anhydrides, 0016020 membrane; PDB: 1TPZ_A 1TQD_A 1TQ6_A 1TQ2_B 1TQ4_A.
Probab=97.98 E-value=5.9e-05 Score=60.83 Aligned_cols=118 Identities=20% Similarity=0.292 Sum_probs=62.7
Q ss_pred EEEEEeCCCCcccHHHHHHh-----hhcCCEEEEEEeCCCcccHHHHHHHHHHHHhCCCCCCCcEEEEEeCCCC------
Q 029517 57 KLVFWDLGGQPGLRSIWEKY-----YEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDL------ 125 (192)
Q Consensus 57 ~~~i~D~~G~~~~~~~~~~~-----~~~~d~ii~v~D~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl------ 125 (192)
++.+||.||.....-....| +...|.+|++.+-. |....-++..-.+. .++|+.+|-+|+|.
T Consensus 87 nv~lWDlPG~gt~~f~~~~Yl~~~~~~~yD~fiii~s~r----f~~ndv~La~~i~~---~gK~fyfVRTKvD~Dl~~~~ 159 (376)
T PF05049_consen 87 NVTLWDLPGIGTPNFPPEEYLKEVKFYRYDFFIIISSER----FTENDVQLAKEIQR---MGKKFYFVRTKVDSDLYNER 159 (376)
T ss_dssp TEEEEEE--GGGSS--HHHHHHHTTGGG-SEEEEEESSS------HHHHHHHHHHHH---TT-EEEEEE--HHHHHHHHH
T ss_pred CCeEEeCCCCCCCCCCHHHHHHHccccccCEEEEEeCCC----CchhhHHHHHHHHH---cCCcEEEEEecccccHhhhh
Confidence 69999999954222222333 45689988887643 55555555554444 47999999999995
Q ss_pred ---CCCCCH----HHHHhHcC--ccccCCcceEEEEeeecC--CCCHHHHHHHHHHHHHhcchhhhh
Q 029517 126 ---PDAVSA----DELARYLD--LKKLDERVCMFEAVSGYD--GFGIKESVEWLVEVMERSKRTEML 181 (192)
Q Consensus 126 ---~~~~~~----~~~~~~~~--~~~~~~~~~~~~~~Sa~~--~~gi~e~~~~i~~~i~~~~~~~~~ 181 (192)
+...+. +++++.+. +....-...++|.+|+.+ ......+.+.|.+.+..+++...+
T Consensus 160 ~~~p~~f~~e~~L~~IR~~c~~~L~k~gv~~P~VFLVS~~dl~~yDFp~L~~tL~~dLp~~Kr~~fl 226 (376)
T PF05049_consen 160 RRKPRTFNEEKLLQEIRENCLENLQKAGVSEPQVFLVSSFDLSKYDFPKLEETLEKDLPAHKRHAFL 226 (376)
T ss_dssp CC-STT--HHTHHHHHHHHHHHHHHCTT-SS--EEEB-TTTTTSTTHHHHHHHHHHHS-GGGHHHHH
T ss_pred ccCCcccCHHHHHHHHHHHHHHHHHHcCCCcCceEEEeCCCcccCChHHHHHHHHHHhHHHHHHHHH
Confidence 112222 23333332 111122356899999977 456888889998888877765543
No 333
>PF06858 NOG1: Nucleolar GTP-binding protein 1 (NOG1); InterPro: IPR010674 This domain represents a conserved region of approximately 60 residues in length within nucleolar GTP-binding protein 1 (NOG1). The NOG1 family includes eukaryotic, bacterial and archaeal proteins. In Saccharomyces cerevisiae, the NOG1 gene has been shown to be essential for cell viability, suggesting that NOG1 may play an important role in nucleolar functions. In particular, NOG1 is believed to be functionally linked to ribosome biogenesis, which occurs in the nucleolus. In eukaryotes, NOG1 mutants were found to disrupt the biogenesis of the 60S ribosomal subunit []. The DRG and OBG proteins as well as the prokaryotic NOG-like proteins are homologous throughout their length to the amino half of eukaryotic NOG1, which contains the GTP binding motifs (IPR006073 from INTERPRO); the N-terminal GTP-binding motif is required for function.; GO: 0005525 GTP binding; PDB: 2E87_A.
Probab=97.97 E-value=3.6e-05 Score=44.78 Aligned_cols=43 Identities=26% Similarity=0.519 Sum_probs=30.3
Q ss_pred CCEEEEEEeCC--CcccHHHHHHHHHHHHhCCCCCCCcEEEEEeCCC
Q 029517 80 AHAVVFVIDAA--CPSRFEDSKTALEKVLRNEDLQGAPLLILANKQD 124 (192)
Q Consensus 80 ~d~ii~v~D~~--~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~D 124 (192)
.++++|++|++ ++.+.++-..+++.+.... .++|+++|.||+|
T Consensus 14 ~~~ilfi~D~Se~CGysie~Q~~L~~~ik~~F--~~~P~i~V~nK~D 58 (58)
T PF06858_consen 14 ADAILFIIDPSEQCGYSIEEQLSLFKEIKPLF--PNKPVIVVLNKID 58 (58)
T ss_dssp -SEEEEEE-TT-TTSS-HHHHHHHHHHHHHHT--TTS-EEEEE--TT
T ss_pred cceEEEEEcCCCCCCCCHHHHHHHHHHHHHHc--CCCCEEEEEeccC
Confidence 68899999997 4567787777888887763 4899999999998
No 334
>PF05783 DLIC: Dynein light intermediate chain (DLIC); InterPro: IPR022780 This entry consists of several eukaryotic dynein light intermediate chain proteins. The light intermediate chains (LICs) of cytoplasmic dynein consist of multiple isoforms, which undergo post-translational modification to produce a large number of species. DLIC1 is known to be involved in assembly, organisation, and function of centrosomes and mitotic spindles when bound to pericentrin [, ]. DLIC2 is a subunit of cytoplasmic dynein 2 that may play a role in maintaining Golgi organisation by binding cytoplasmic dynein 2 to its Golgi-associated cargo [].
Probab=97.93 E-value=0.00016 Score=60.35 Aligned_cols=143 Identities=15% Similarity=0.224 Sum_probs=93.1
Q ss_pred HHHHHHhhhhccCCCCCCCCCCCCcceEEEEEEec------CEEEEEEeCCCCcccHHHHHHhhhc----CCEEEEEEeC
Q 029517 20 TLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVS------NSKLVFWDLGGQPGLRSIWEKYYEE----AHAVVFVIDA 89 (192)
Q Consensus 20 ~l~~~~~~~~~~~~~~~~~~~~~T~g~~~~~~~~~------~~~~~i~D~~G~~~~~~~~~~~~~~----~d~ii~v~D~ 89 (192)
+|+.++.. .+.+.++.|.+|..++.. ..++.+|-..|...+..+....+.. --++|+|+|.
T Consensus 40 tli~~L~~---------~e~~~~~~aLeYty~~v~d~~~dd~~rl~vw~L~g~~~~~~LLk~~lt~~~l~~t~vvIvlDl 110 (472)
T PF05783_consen 40 TLIARLQG---------IEDPKKGLALEYTYLDVKDEDRDDLARLNVWELDGDPSHSDLLKFALTPENLPNTLVVIVLDL 110 (472)
T ss_pred HHHHHhhc---------cCCCCCCcccceEEEeeccCcCCcCceeeEEEcCCCcchHhHhcccCCcccccceEEEEEecC
Confidence 77777765 234567888888765431 2478999998877777777655543 3568999999
Q ss_pred CCcccHH-HHHHHHHHHHh-------------------------C------C-----------------C----------
Q 029517 90 ACPSRFE-DSKTALEKVLR-------------------------N------E-----------------D---------- 110 (192)
Q Consensus 90 ~~~~s~~-~~~~~~~~i~~-------------------------~------~-----------------~---------- 110 (192)
+.|..+- .+..|+.-+.+ + . .
T Consensus 111 S~PW~~~esL~~W~~vl~~~i~~L~~~~e~~~e~~~kl~~~~q~Y~ep~~~~~~~s~~~~~~~~~~~~~~~~~lpl~~g~ 190 (472)
T PF05783_consen 111 SKPWNIMESLEKWLSVLREHIEKLKSDPEEREELRQKLERQWQEYVEPGDSSDSGSPNRRSPSSSSSDDESVLLPLGEGV 190 (472)
T ss_pred CChHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHhhhccccccccCcccccccccccccccccCCCCCcc
Confidence 9876553 33333221110 0 0 0
Q ss_pred ---CCCCcEEEEEeCCCCCCCCCH-----H----H----HHhHcCccccCCcceEEEEeeecCCCCHHHHHHHHHHHHHh
Q 029517 111 ---LQGAPLLILANKQDLPDAVSA-----D----E----LARYLDLKKLDERVCMFEAVSGYDGFGIKESVEWLVEVMER 174 (192)
Q Consensus 111 ---~~~~piiiv~nK~Dl~~~~~~-----~----~----~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~e~~~~i~~~i~~ 174 (192)
.-++|++||++|+|.....+. + - ++.++- .+|...+.||++...+++-++..|...+..
T Consensus 191 l~~nlGipi~VV~tksD~~~~Lek~~~~~~e~~DfIqq~LR~~cL-----~yGAsL~yts~~~~~n~~~L~~yi~h~l~~ 265 (472)
T PF05783_consen 191 LTENLGIPIVVVCTKSDKIETLEKETDWKEEHFDFIQQYLRTFCL-----KYGASLIYTSVKEEKNLDLLYKYILHRLYG 265 (472)
T ss_pred cccccCcceEEEEecccHHHHHhhhcccchhhHHHHHHHHHHHHH-----hcCCeEEEeeccccccHHHHHHHHHHHhcc
Confidence 014899999999997431111 1 1 223332 568889999999999999999998888765
Q ss_pred cc
Q 029517 175 SK 176 (192)
Q Consensus 175 ~~ 176 (192)
..
T Consensus 266 ~~ 267 (472)
T PF05783_consen 266 FP 267 (472)
T ss_pred CC
Confidence 43
No 335
>KOG3905 consensus Dynein light intermediate chain [Cell motility]
Probab=97.85 E-value=0.00033 Score=55.10 Aligned_cols=142 Identities=15% Similarity=0.165 Sum_probs=94.0
Q ss_pred HHHHHHhhhhccCCCCCCCCCCCCcceEEEEEEec------CEEEEEEeCCCCcccHHHHHHhhhc---C-CEEEEEEeC
Q 029517 20 TLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVS------NSKLVFWDLGGQPGLRSIWEKYYEE---A-HAVVFVIDA 89 (192)
Q Consensus 20 ~l~~~~~~~~~~~~~~~~~~~~~T~g~~~~~~~~~------~~~~~i~D~~G~~~~~~~~~~~~~~---~-d~ii~v~D~ 89 (192)
+|+.++++ .+.+.+-.|.+|..++.. ..++.+|=.-|...+..+....+.. + ..+|++.|.
T Consensus 67 sLi~klqg---------~e~~KkgsgLeY~yl~V~de~RDd~tr~~VWiLDGd~~h~~LLk~al~ats~aetlviltasm 137 (473)
T KOG3905|consen 67 SLISKLQG---------SETVKKGSGLEYLYLHVHDEDRDDLTRCNVWILDGDLYHKGLLKFALPATSLAETLVILTASM 137 (473)
T ss_pred HHHHHhhc---------ccccCCCCCcceEEEecccccchhhhhcceEEecCchhhhhHHhhcccccCccceEEEEEEec
Confidence 77777776 335566667777665432 3578999888977666666555443 2 457888999
Q ss_pred CCccc-HHHHHHHHHHHHhC-------------------------CC---------------------------------
Q 029517 90 ACPSR-FEDSKTALEKVLRN-------------------------ED--------------------------------- 110 (192)
Q Consensus 90 ~~~~s-~~~~~~~~~~i~~~-------------------------~~--------------------------------- 110 (192)
+++.. ++.++.|..-+.+. .+
T Consensus 138 s~Pw~~lesLqkWa~Vl~ehidkl~i~~ee~ka~rqk~~k~wQeYvep~e~~pgsp~~r~t~~~~~~de~~llPL~~dtL 217 (473)
T KOG3905|consen 138 SNPWTLLESLQKWASVLREHIDKLKIPPEEMKAGRQKLEKDWQEYVEPGEDQPGSPQRRTTVVGSSADEHVLLPLGQDTL 217 (473)
T ss_pred CCcHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhcCccccCCCCcccccccccCccccccccccCCcch
Confidence 98843 35555554333211 00
Q ss_pred --CCCCcEEEEEeCCCCCCC----CCH---------HHHHhHcCccccCCcceEEEEeeecCCCCHHHHHHHHHHHHHhc
Q 029517 111 --LQGAPLLILANKQDLPDA----VSA---------DELARYLDLKKLDERVCMFEAVSGYDGFGIKESVEWLVEVMERS 175 (192)
Q Consensus 111 --~~~~piiiv~nK~Dl~~~----~~~---------~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~e~~~~i~~~i~~~ 175 (192)
.-++|+++|++|+|.... .+. ..++++|- ..+...+.+|+|...|++-+...|+..+...
T Consensus 218 t~NlGi~vlVV~TK~D~~s~leke~eyrDehfdfiq~~lRkFCL-----r~GaaLiyTSvKE~KNidllyKYivhr~yG~ 292 (473)
T KOG3905|consen 218 THNLGIPVLVVCTKCDAVSVLEKEHEYRDEHFDFIQSHLRKFCL-----RYGAALIYTSVKETKNIDLLYKYIVHRSYGF 292 (473)
T ss_pred hhcCCCcEEEEEeccchhhHhhhcchhhHHHHHHHHHHHHHHHH-----HcCceeEEeecccccchHHHHHHHHHHhcCc
Confidence 125889999999998431 111 12334443 5688899999999999999999999887643
No 336
>COG5258 GTPBP1 GTPase [General function prediction only]
Probab=97.74 E-value=0.00039 Score=55.86 Aligned_cols=107 Identities=15% Similarity=0.071 Sum_probs=69.9
Q ss_pred CEEEEEEeCCCCcccHHHHH--HhhhcCCEEEEEEeCCCcccHHHHHHHHHHHHhCCCCCCCcEEEEEeCCCCCCC----
Q 029517 55 NSKLVFWDLGGQPGLRSIWE--KYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDA---- 128 (192)
Q Consensus 55 ~~~~~i~D~~G~~~~~~~~~--~~~~~~d~ii~v~D~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~~---- 128 (192)
+.-+.++||.||++|..... ..-++.|-.++++.+.+..+.-. ....-+.-. .+.|++++.+|+|+...
T Consensus 200 DklVsfVDtvGHEpwLrTtirGL~gqk~dYglLvVaAddG~~~~t--kEHLgi~~a---~~lPviVvvTK~D~~~ddr~~ 274 (527)
T COG5258 200 DKLVSFVDTVGHEPWLRTTIRGLLGQKVDYGLLVVAADDGVTKMT--KEHLGIALA---MELPVIVVVTKIDMVPDDRFQ 274 (527)
T ss_pred ccEEEEEecCCccHHHHHHHHHHhccccceEEEEEEccCCcchhh--hHhhhhhhh---hcCCEEEEEEecccCcHHHHH
Confidence 34588999999999876432 23467899999999887754433 333333333 47999999999998652
Q ss_pred CCHHHHHhHcCc--------------------cccCCcceEEEEeeecCCCCHHHHHH
Q 029517 129 VSADELARYLDL--------------------KKLDERVCMFEAVSGYDGFGIKESVE 166 (192)
Q Consensus 129 ~~~~~~~~~~~~--------------------~~~~~~~~~~~~~Sa~~~~gi~e~~~ 166 (192)
-..+++...++. ...+..-.|++.+|+.+|+|++-+.+
T Consensus 275 ~v~~ei~~~Lk~v~Rip~~vk~~~d~v~aa~a~k~~~~vvPi~~tSsVTg~GldlL~e 332 (527)
T COG5258 275 GVVEEISALLKRVGRIPLIVKDTDDVVLAAKAMKAGRGVVPIFYTSSVTGEGLDLLDE 332 (527)
T ss_pred HHHHHHHHHHHHhcccceeeeccchhHHhhhhhhcCCceEEEEEEecccCccHHHHHH
Confidence 112233333320 01123368999999999999865443
No 337
>KOG1487 consensus GTP-binding protein DRG1 (ODN superfamily) [Signal transduction mechanisms]
Probab=97.70 E-value=6.1e-05 Score=57.35 Aligned_cols=147 Identities=20% Similarity=0.216 Sum_probs=93.4
Q ss_pred hccccHHHHHHHHhhhhccCCCCCCCCCCCCcceEEEEEEecCEEEEEEeCCCCcc-------cHHHHHHhhhcCCEEEE
Q 029517 13 FTKTEFHTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPG-------LRSIWEKYYEEAHAVVF 85 (192)
Q Consensus 13 ~kst~~~~l~~~~~~~~~~~~~~~~~~~~~T~g~~~~~~~~~~~~~~i~D~~G~~~-------~~~~~~~~~~~~d~ii~ 85 (192)
|-|+.-.||+..+.+..+.++.++.++.....|+ +.++.-++++.|.||.-+ -........+.|+++++
T Consensus 67 FPSvGksTl~~~l~g~~s~vasyefttl~~vpG~----~~y~gaKiqlldlpgiiegakdgkgrg~qviavartcnli~~ 142 (358)
T KOG1487|consen 67 FPSVGKSTLLSKLTGTFSEVAAYEFTTLTTVPGV----IRYKGAKIQLLDLPGIIEGAKDGKGRGKQVIAVARTCNLIFI 142 (358)
T ss_pred cCccchhhhhhhhcCCCCccccccceeEEEecce----EeccccceeeecCcchhcccccCCCCccEEEEEeecccEEEE
Confidence 4455556777788888888888887775544444 556678899999999321 11223334577999999
Q ss_pred EEeCCCcccHHHHHH-------------------------------------HHHHHHh-C----------CC-------
Q 029517 86 VIDAACPSRFEDSKT-------------------------------------ALEKVLR-N----------ED------- 110 (192)
Q Consensus 86 v~D~~~~~s~~~~~~-------------------------------------~~~~i~~-~----------~~------- 110 (192)
|.|+..+-+-..+.+ ....++. + .+
T Consensus 143 vld~~kp~~hk~~ie~eleg~girlnk~pp~i~~kkKdkgGInlt~~~LdlD~~rsil~eyR~hsAdi~Lr~DaT~DdLI 222 (358)
T KOG1487|consen 143 VLDVLKPLSHKKIIEKELEGFGIRLNKQPPNIGTKKKDKGGINLTGTHLDLDLQRSILSEYRIHSADIALRFDATADDLI 222 (358)
T ss_pred EeeccCcccHHHHHHHhhhcceeeccCCCCCccccccccCceeeecchhhHHHHHHHHHHhhhcchheeeecCcchhhhh
Confidence 999865433222111 1111111 0 00
Q ss_pred ------CCCCcEEEEEeCCCCCCCCCHHHHHhHcCccccCCcceEEEEeeecCCCCHHHHHHHHHHHHH
Q 029517 111 ------LQGAPLLILANKQDLPDAVSADELARYLDLKKLDERVCMFEAVSGYDGFGIKESVEWLVEVME 173 (192)
Q Consensus 111 ------~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~e~~~~i~~~i~ 173 (192)
..-+|.+.++||+|.. +.|+..-.. ......++||-++-|++++++.+.+.+.
T Consensus 223 dvVegnr~yVp~iyvLNkIdsI---SiEELdii~-------~iphavpISA~~~wn~d~lL~~mweyL~ 281 (358)
T KOG1487|consen 223 DVVEGNRIYVPCIYVLNKIDSI---SIEELDIIY-------TIPHAVPISAHTGWNFDKLLEKMWEYLK 281 (358)
T ss_pred hhhccCceeeeeeeeeccccee---eeeccceee-------eccceeecccccccchHHHHHHHhhcch
Confidence 0146888999999854 444443223 2567788999999999999999988654
No 338
>KOG0460 consensus Mitochondrial translation elongation factor Tu [Translation, ribosomal structure and biogenesis]
Probab=97.70 E-value=0.00011 Score=58.06 Aligned_cols=102 Identities=15% Similarity=0.062 Sum_probs=66.4
Q ss_pred EEecCEEEEEEeCCCCcccHHHHHHhhhcCCEEEEEEeCCCcccHHHHHHHHHHHHhCCCCCCCcEEEEEeCCCCCCCCC
Q 029517 51 IEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAVS 130 (192)
Q Consensus 51 ~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ii~v~D~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~~~~ 130 (192)
+.-...++-=.|+|||.+|-.....--..-|+.|+|+.++|..-.+. ++-+....+. .-..+++++||.|+.+..+
T Consensus 112 YeTa~RhYaH~DCPGHADYIKNMItGaaqMDGaILVVaatDG~MPQT-rEHlLLArQV---GV~~ivvfiNKvD~V~d~e 187 (449)
T KOG0460|consen 112 YETAKRHYAHTDCPGHADYIKNMITGAAQMDGAILVVAATDGPMPQT-REHLLLARQV---GVKHIVVFINKVDLVDDPE 187 (449)
T ss_pred eeccccccccCCCCchHHHHHHhhcCccccCceEEEEEcCCCCCcch-HHHHHHHHHc---CCceEEEEEecccccCCHH
Confidence 33446788889999999988766555567899999999998764433 3333333333 2357888999999874111
Q ss_pred -----HHHHHhHcCccccCCcceEEEEeeec
Q 029517 131 -----ADELARYLDLKKLDERVCMFEAVSGY 156 (192)
Q Consensus 131 -----~~~~~~~~~~~~~~~~~~~~~~~Sa~ 156 (192)
.-++++++..-.+..-..+++.-||.
T Consensus 188 ~leLVEmE~RElLse~gf~Gd~~PvI~GSAL 218 (449)
T KOG0460|consen 188 MLELVEMEIRELLSEFGFDGDNTPVIRGSAL 218 (449)
T ss_pred HHHHHHHHHHHHHHHcCCCCCCCCeeecchh
Confidence 12344444433344456778877774
No 339
>COG1162 Predicted GTPases [General function prediction only]
Probab=97.66 E-value=0.00047 Score=53.87 Aligned_cols=87 Identities=24% Similarity=0.190 Sum_probs=58.5
Q ss_pred hhhcCCEEEEEEeCCCcc-cHHHHHHHHHHHHhCCCCCCCcEEEEEeCCCCCCCCCHH--HHHhHcCccccCCcceEEEE
Q 029517 76 YYEEAHAVVFVIDAACPS-RFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAVSAD--ELARYLDLKKLDERVCMFEA 152 (192)
Q Consensus 76 ~~~~~d~ii~v~D~~~~~-s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~~~~~~--~~~~~~~~~~~~~~~~~~~~ 152 (192)
.+.+.|-+++|+.+.+|+ +...+..++-.+.. .++.-++++||+||.+..... +...... ..+++.+.
T Consensus 76 ~v~n~d~~iiIvs~~~P~~~~~~ldR~Lv~ae~----~gi~pvIvlnK~DL~~~~~~~~~~~~~~y~-----~~gy~v~~ 146 (301)
T COG1162 76 PVANNDQAIIVVSLVDPDFNTNLLDRYLVLAEA----GGIEPVIVLNKIDLLDDEEAAVKELLREYE-----DIGYPVLF 146 (301)
T ss_pred cccccceEEEEEeccCCCCCHHHHHHHHHHHHH----cCCcEEEEEEccccCcchHHHHHHHHHHHH-----hCCeeEEE
Confidence 344566667777666554 55555555544433 467667779999998744333 2222332 56899999
Q ss_pred eeecCCCCHHHHHHHHHHH
Q 029517 153 VSGYDGFGIKESVEWLVEV 171 (192)
Q Consensus 153 ~Sa~~~~gi~e~~~~i~~~ 171 (192)
+|++++.|++++.+.+...
T Consensus 147 ~s~~~~~~~~~l~~~l~~~ 165 (301)
T COG1162 147 VSAKNGDGLEELAELLAGK 165 (301)
T ss_pred ecCcCcccHHHHHHHhcCC
Confidence 9999999999998887654
No 340
>cd01900 YchF YchF subfamily. YchF is a member of the Obg family, which includes four other subfamilies of GTPases: Obg, DRG, Ygr210, and NOG1. Obg is an essential gene that is involved in DNA replication in C. crescentus and Streptomyces griseus and is associated with the ribosome. Several members of the family, including YchF, possess the TGS domain related to the RNA-binding proteins. Experimental data and genomic analysis suggest that YchF may be part of a nucleoprotein complex and may function as a GTP-dependent translational factor.
Probab=97.65 E-value=0.00011 Score=57.05 Aligned_cols=73 Identities=22% Similarity=0.237 Sum_probs=44.2
Q ss_pred ccccHHHHHHHHhhhhccCCCCCCCCCCCCcceEEEEEE----------e---cCEEEEEEeCCCCcc-------cHHHH
Q 029517 14 TKTEFHTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIE----------V---SNSKLVFWDLGGQPG-------LRSIW 73 (192)
Q Consensus 14 kst~~~~l~~~~~~~~~~~~~~~~~~~~~T~g~~~~~~~----------~---~~~~~~i~D~~G~~~-------~~~~~ 73 (192)
|||+||+|.+.- ..+.+++.++..|..|.-...-. . -...++++|+||..+ .....
T Consensus 11 KSTLfn~Lt~~~----~~~~n~pftTi~p~~g~v~v~d~r~~~l~~~~~~~k~~~~~i~lvD~pGl~~~a~~~~glg~~f 86 (274)
T cd01900 11 KSTLFNALTKAG----AEAANYPFCTIEPNVGIVPVPDERLDKLAEIVKPKKIVPATIEFVDIAGLVKGASKGEGLGNKF 86 (274)
T ss_pred HHHHHHHHhCCC----CccccccccchhceeeeEEeccchhhhHHHHhCCceeeeeEEEEEECCCcCCCCchhhHHHHHH
Confidence 888888886643 24455555555555554322110 0 012599999999421 22233
Q ss_pred HHhhhcCCEEEEEEeCC
Q 029517 74 EKYYEEAHAVVFVIDAA 90 (192)
Q Consensus 74 ~~~~~~~d~ii~v~D~~ 90 (192)
...++.+|++++|+|+.
T Consensus 87 L~~i~~~D~li~VV~~f 103 (274)
T cd01900 87 LSHIREVDAIAHVVRCF 103 (274)
T ss_pred HHHHHhCCEEEEEEeCc
Confidence 44578899999999874
No 341
>KOG0464 consensus Elongation factor G [Translation, ribosomal structure and biogenesis]
Probab=97.62 E-value=1.9e-05 Score=63.75 Aligned_cols=85 Identities=18% Similarity=0.157 Sum_probs=65.3
Q ss_pred EEEecCEEEEEEeCCCCcccHHHHHHhhhcCCEEEEEEeCCCcccHHHHHHHHHHHHhCCCCCCCcEEEEEeCCCCCC--
Q 029517 50 RIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPD-- 127 (192)
Q Consensus 50 ~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ii~v~D~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~-- 127 (192)
.++.++.++.++||||+-+|+...+.+++-.||++.|+|.+..-.-+.+-.|-+ .+..++|-++++||+|...
T Consensus 96 ~fdwkg~rinlidtpghvdf~leverclrvldgavav~dasagve~qtltvwrq-----adk~~ip~~~finkmdk~~an 170 (753)
T KOG0464|consen 96 NFDWKGHRINLIDTPGHVDFRLEVERCLRVLDGAVAVFDASAGVEAQTLTVWRQ-----ADKFKIPAHCFINKMDKLAAN 170 (753)
T ss_pred ecccccceEeeecCCCcceEEEEHHHHHHHhcCeEEEEeccCCcccceeeeehh-----ccccCCchhhhhhhhhhhhhh
Confidence 467788999999999999999999999999999999999987654444444422 1225789999999999876
Q ss_pred -CCCHHHHHhHcC
Q 029517 128 -AVSADELARYLD 139 (192)
Q Consensus 128 -~~~~~~~~~~~~ 139 (192)
....+.+.+.++
T Consensus 171 fe~avdsi~ekl~ 183 (753)
T KOG0464|consen 171 FENAVDSIEEKLG 183 (753)
T ss_pred hhhHHHHHHHHhC
Confidence 334455555554
No 342
>KOG0465 consensus Mitochondrial elongation factor [Translation, ribosomal structure and biogenesis]
Probab=97.57 E-value=0.00034 Score=59.05 Aligned_cols=81 Identities=17% Similarity=0.173 Sum_probs=59.2
Q ss_pred EEecCEEEEEEeCCCCcccHHHHHHhhhcCCEEEEEEeCCCcccHHHHHHHHHHHHhCCCCCCCcEEEEEeCCCCCCCCC
Q 029517 51 IEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAVS 130 (192)
Q Consensus 51 ~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ii~v~D~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~~~~ 130 (192)
+.....++++.|||||-+|.-..+..++-.|+.|+|+|+...-.-+..--| ++..++ ++|.+.++||+|...+..
T Consensus 99 ~~w~~~~iNiIDTPGHvDFT~EVeRALrVlDGaVlvl~aV~GVqsQt~tV~-rQ~~ry----~vP~i~FiNKmDRmGa~~ 173 (721)
T KOG0465|consen 99 FTWRDYRINIIDTPGHVDFTFEVERALRVLDGAVLVLDAVAGVESQTETVW-RQMKRY----NVPRICFINKMDRMGASP 173 (721)
T ss_pred eeeccceeEEecCCCceeEEEEehhhhhhccCeEEEEEcccceehhhHHHH-HHHHhc----CCCeEEEEehhhhcCCCh
Confidence 445678999999999999988899999999999999998755322222222 223333 799999999999877544
Q ss_pred HHHHHh
Q 029517 131 ADELAR 136 (192)
Q Consensus 131 ~~~~~~ 136 (192)
...+.+
T Consensus 174 ~~~l~~ 179 (721)
T KOG0465|consen 174 FRTLNQ 179 (721)
T ss_pred HHHHHH
Confidence 443333
No 343
>KOG1954 consensus Endocytosis/signaling protein EHD1 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.56 E-value=0.00064 Score=54.40 Aligned_cols=73 Identities=16% Similarity=0.257 Sum_probs=49.6
Q ss_pred EEEEEeCCCC-----------cccHHHHHHhhhcCCEEEEEEeCCCcccHHHHHHHHHHHHhCCCCCCCcEEEEEeCCCC
Q 029517 57 KLVFWDLGGQ-----------PGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDL 125 (192)
Q Consensus 57 ~~~i~D~~G~-----------~~~~~~~~~~~~~~d~ii~v~D~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl 125 (192)
++.|+||||. .+|......+..+||.|+++||+-..+--++....+..+... .-.+-+|+||+|.
T Consensus 148 ~vtiVdtPGILsgeKQrisR~ydF~~v~~WFaeR~D~IiLlfD~hKLDIsdEf~~vi~aLkG~----EdkiRVVLNKADq 223 (532)
T KOG1954|consen 148 SVTIVDTPGILSGEKQRISRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFKRVIDALKGH----EDKIRVVLNKADQ 223 (532)
T ss_pred heeeeccCcccccchhcccccCChHHHHHHHHHhccEEEEEechhhccccHHHHHHHHHhhCC----cceeEEEeccccc
Confidence 6789999991 246667788899999999999986443334444444444333 3457788999995
Q ss_pred CCCCCHHHHHh
Q 029517 126 PDAVSADELAR 136 (192)
Q Consensus 126 ~~~~~~~~~~~ 136 (192)
. +.+++.+
T Consensus 224 V---dtqqLmR 231 (532)
T KOG1954|consen 224 V---DTQQLMR 231 (532)
T ss_pred c---CHHHHHH
Confidence 5 4455443
No 344
>PF00350 Dynamin_N: Dynamin family; InterPro: IPR001401 Membrane transport between compartments in eukaryotic cells requires proteins that allow the budding and scission of nascent cargo vesicles from one compartment and their targeting and fusion with another. Dynamins are large GTPases that belong to a protein superfamily [] that, in eukaryotic cells, includes classical dynamins, dynamin-like proteins, OPA1, Mx proteins, mitofusins and guanylate-binding proteins/atlastins [, , , ], and are involved in the scission of a wide range of vesicles and organelles. They play a role in many processes including budding of transport vesicles, division of organelles, cytokinesis and pathogen resistance. The minimal distinguishing architectural features that are common to all dynamins and are distinct from other GTPases are the structure of the large GTPase domain (300 amino acids) and the presence of two additional domains; the middle domain and the GTPase effector domain (GED), which are involved in oligomerization and regulation of the GTPase activity. This entry represents the GTPase domain, containing the GTP-binding motifs that are needed for guanine-nucleotide binding and hydrolysis. The conservation of these motifs is absolute except for the the final motif in guanylate-binding proteins. The GTPase catalytic activity can be stimulated by oligomerisation of the protein, which is mediated by interactions between the GTPase domain, the middle domain and the GED.; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1JWY_B 1JX2_B 3ZVR_A 2AKA_B 3L43_B 2X2F_D 2X2E_D 3SNH_A 3ZYS_D 3ZYC_D ....
Probab=97.55 E-value=0.00018 Score=51.52 Aligned_cols=64 Identities=23% Similarity=0.257 Sum_probs=44.4
Q ss_pred EEEEEEeCCCCc----ccHHHHHHhhhcCCEEEEEEeCCCcccHHHHHHHHHHHHhCCCCCCCcEEEEEeCC
Q 029517 56 SKLVFWDLGGQP----GLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQ 123 (192)
Q Consensus 56 ~~~~i~D~~G~~----~~~~~~~~~~~~~d~ii~v~D~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~ 123 (192)
..+.|+||||.. .....+..++..+|++|+|.+++...+-.....+.+..... ...+++|.||+
T Consensus 101 ~~~~lvDtPG~~~~~~~~~~~~~~~~~~~d~vi~V~~~~~~~~~~~~~~l~~~~~~~----~~~~i~V~nk~ 168 (168)
T PF00350_consen 101 RNLTLVDTPGLNSTNSEHTEITEEYLPKADVVIFVVDANQDLTESDMEFLKQMLDPD----KSRTIFVLNKA 168 (168)
T ss_dssp CSEEEEEEEEBHSSHTTTSHHHHHHHSTTEEEEEEEETTSTGGGHHHHHHHHHHTTT----CSSEEEEEE-G
T ss_pred cceEEEeCCccccchhhhHHHHHHhhccCCEEEEEeccCcccchHHHHHHHHHhcCC----CCeEEEEEcCC
Confidence 358999999953 23366788899999999999998765544444444433333 34489999985
No 345
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=97.53 E-value=6e-05 Score=57.53 Aligned_cols=106 Identities=22% Similarity=0.251 Sum_probs=64.9
Q ss_pred cCEEEEEEeCCC--CcccHHHHHHhhhcCCEEEEEEeCCCcccHHHHHHHHHHHHhCCCCCCCcEEEEEeCCCCCCC-CC
Q 029517 54 SNSKLVFWDLGG--QPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDA-VS 130 (192)
Q Consensus 54 ~~~~~~i~D~~G--~~~~~~~~~~~~~~~d~ii~v~D~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~~-~~ 130 (192)
-++.+.|++|.| |.+. ....-+|.+++|.-+.-.+..+.++.-+.++ .=++|+||+|++.+ ..
T Consensus 120 aG~D~IiiETVGvGQsE~-----~I~~~aD~~v~v~~Pg~GD~iQ~~KaGimEi---------aDi~vVNKaD~~gA~~~ 185 (266)
T PF03308_consen 120 AGFDVIIIETVGVGQSEV-----DIADMADTVVLVLVPGLGDEIQAIKAGIMEI---------ADIFVVNKADRPGADRT 185 (266)
T ss_dssp TT-SEEEEEEESSSTHHH-----HHHTTSSEEEEEEESSTCCCCCTB-TTHHHH----------SEEEEE--SHHHHHHH
T ss_pred cCCCEEEEeCCCCCccHH-----HHHHhcCeEEEEecCCCccHHHHHhhhhhhh---------ccEEEEeCCChHHHHHH
Confidence 367888888888 3322 2456799999999887666666544433332 44689999997552 12
Q ss_pred HHHHHhHcCcccc--CCcceEEEEeeecCCCCHHHHHHHHHHHHH
Q 029517 131 ADELARYLDLKKL--DERVCMFEAVSGYDGFGIKESVEWLVEVME 173 (192)
Q Consensus 131 ~~~~~~~~~~~~~--~~~~~~~~~~Sa~~~~gi~e~~~~i~~~i~ 173 (192)
..++...+.+..- ..-..+++.+||.++.||+++.++|.+.-.
T Consensus 186 ~~~l~~~l~l~~~~~~~W~ppV~~tsA~~~~Gi~eL~~~i~~~~~ 230 (266)
T PF03308_consen 186 VRDLRSMLHLLREREDGWRPPVLKTSALEGEGIDELWEAIDEHRD 230 (266)
T ss_dssp HHHHHHHHHHCSTSCTSB--EEEEEBTTTTBSHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhccccccCCCCCEEEEEeCCCCCHHHHHHHHHHHHH
Confidence 2333333332111 112468999999999999999999987443
No 346
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=97.46 E-value=0.00078 Score=52.47 Aligned_cols=109 Identities=18% Similarity=0.163 Sum_probs=69.5
Q ss_pred cCEEEEEEeCCCCcccHHHHHHhhhcCCEEEEEEeCCCcccHHHHHHHHHHHHhCCCCCCCcEEEEEeCCCCCCC-CCHH
Q 029517 54 SNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDA-VSAD 132 (192)
Q Consensus 54 ~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ii~v~D~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~~-~~~~ 132 (192)
-++.+.|++|.|--.-.. ....-+|.+++|.=+.-.+..+.++.- +++. -=++|+||.|+..+ ....
T Consensus 142 aG~DvIIVETVGvGQsev---~I~~~aDt~~~v~~pg~GD~~Q~iK~G---imEi------aDi~vINKaD~~~A~~a~r 209 (323)
T COG1703 142 AGYDVIIVETVGVGQSEV---DIANMADTFLVVMIPGAGDDLQGIKAG---IMEI------ADIIVINKADRKGAEKAAR 209 (323)
T ss_pred cCCCEEEEEecCCCcchh---HHhhhcceEEEEecCCCCcHHHHHHhh---hhhh------hheeeEeccChhhHHHHHH
Confidence 467788888888432211 234569999999977766666655543 3332 23588999997652 1122
Q ss_pred HHHhHcCccc--cC--CcceEEEEeeecCCCCHHHHHHHHHHHHHh
Q 029517 133 ELARYLDLKK--LD--ERVCMFEAVSGYDGFGIKESVEWLVEVMER 174 (192)
Q Consensus 133 ~~~~~~~~~~--~~--~~~~~~~~~Sa~~~~gi~e~~~~i~~~i~~ 174 (192)
++...+.+.. .. .=..+++.+||.+|+|++++++.+.+...-
T Consensus 210 ~l~~al~~~~~~~~~~~W~ppv~~t~A~~g~Gi~~L~~ai~~h~~~ 255 (323)
T COG1703 210 ELRSALDLLREVWRENGWRPPVVTTSALEGEGIDELWDAIEDHRKF 255 (323)
T ss_pred HHHHHHHhhcccccccCCCCceeEeeeccCCCHHHHHHHHHHHHHH
Confidence 2222222211 11 125679999999999999999999886653
No 347
>KOG0467 consensus Translation elongation factor 2/ribosome biogenesis protein RIA1 and related proteins [Translation, ribosomal structure and biogenesis]
Probab=97.45 E-value=0.00049 Score=59.47 Aligned_cols=68 Identities=13% Similarity=0.109 Sum_probs=50.0
Q ss_pred ecCEEEEEEeCCCCcccHHHHHHhhhcCCEEEEEEeCCCcccHHHHHHHHHHHHhCCCCCCCcEEEEEeCCCC
Q 029517 53 VSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDL 125 (192)
Q Consensus 53 ~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ii~v~D~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl 125 (192)
.+++.+++.|+|||-+|........+-||+++.++|+...-.-+.. ..+++... .+...++|+||+|.
T Consensus 69 ~~~~~~nlidspghvdf~sevssas~l~d~alvlvdvvegv~~qt~-~vlrq~~~----~~~~~~lvinkidr 136 (887)
T KOG0467|consen 69 HKDYLINLIDSPGHVDFSSEVSSASRLSDGALVLVDVVEGVCSQTY-AVLRQAWI----EGLKPILVINKIDR 136 (887)
T ss_pred cCceEEEEecCCCccchhhhhhhhhhhcCCcEEEEeeccccchhHH-HHHHHHHH----ccCceEEEEehhhh
Confidence 3688999999999999999999999999999999998644222221 11222211 35667889999994
No 348
>KOG2486 consensus Predicted GTPase [General function prediction only]
Probab=97.44 E-value=0.00026 Score=54.43 Aligned_cols=145 Identities=14% Similarity=0.104 Sum_probs=81.1
Q ss_pred hhccccHHHHHHHHhhhhccCCCCCCCCCCCCcceEEEEEEecCEEEEEEeCCC----------CcccHHHHHHhhhcC-
Q 029517 12 IFTKTEFHTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGG----------QPGLRSIWEKYYEEA- 80 (192)
Q Consensus 12 ~~kst~~~~l~~~~~~~~~~~~~~~~~~~~~T~g~~~~~~~~~~~~~~i~D~~G----------~~~~~~~~~~~~~~~- 80 (192)
+-||+++|.++.+.-.... ......-|..+++..+ +-++.+.|.|| -.++......|+.+-
T Consensus 147 VGKSSLln~~~r~k~~~~t-----~k~K~g~Tq~in~f~v---~~~~~~vDlPG~~~a~y~~~~~~d~~~~t~~Y~leR~ 218 (320)
T KOG2486|consen 147 VGKSSLLNDLVRVKNIADT-----SKSKNGKTQAINHFHV---GKSWYEVDLPGYGRAGYGFELPADWDKFTKSYLLERE 218 (320)
T ss_pred ccHHHHHhhhhhhhhhhhh-----cCCCCccceeeeeeec---cceEEEEecCCcccccCCccCcchHhHhHHHHHHhhh
Confidence 6789999988865443211 1112334444444443 34889999999 224555666666543
Q ss_pred --CEEEEEEeCCCcccHHHHHHHHHHHHhCCCCCCCcEEEEEeCCCCCCC------CCHHHHHhHcC-c-cccCCcceEE
Q 029517 81 --HAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDA------VSADELARYLD-L-KKLDERVCMF 150 (192)
Q Consensus 81 --d~ii~v~D~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~~------~~~~~~~~~~~-~-~~~~~~~~~~ 150 (192)
-.+.+.+|++.+ ++........++.. .+.|+.+|.||+|.... .....+...+. + ...-....+|
T Consensus 219 nLv~~FLLvd~sv~--i~~~D~~~i~~~ge---~~VP~t~vfTK~DK~k~~~~~~kKp~~~i~~~f~~l~~~~f~~~~Pw 293 (320)
T KOG2486|consen 219 NLVRVFLLVDASVP--IQPTDNPEIAWLGE---NNVPMTSVFTKCDKQKKVKRTGKKPGLNIKINFQGLIRGVFLVDLPW 293 (320)
T ss_pred hhheeeeeeeccCC--CCCCChHHHHHHhh---cCCCeEEeeehhhhhhhccccccCccccceeehhhccccceeccCCc
Confidence 334455566533 11111222223333 47999999999997541 11122222111 1 1112335678
Q ss_pred EEeeecCCCCHHHHHHHHH
Q 029517 151 EAVSGYDGFGIKESVEWLV 169 (192)
Q Consensus 151 ~~~Sa~~~~gi~e~~~~i~ 169 (192)
+.+|+.++.|++++.-.+.
T Consensus 294 ~~~Ssvt~~Grd~Ll~~i~ 312 (320)
T KOG2486|consen 294 IYVSSVTSLGRDLLLLHIA 312 (320)
T ss_pred eeeecccccCceeeeeehh
Confidence 8899999999998876554
No 349
>KOG0705 consensus GTPase-activating protein Centaurin gamma (contains Ras-like GTPase, PH and ankyrin repeat domains) [Signal transduction mechanisms]
Probab=97.43 E-value=0.001 Score=55.70 Aligned_cols=123 Identities=15% Similarity=0.354 Sum_probs=89.3
Q ss_pred EEecCEEEEEEeCCCCcccHHHHHHhhhcCCEEEEEEeCCCcccHHHHHHHHHHHHhCCCCCCCcEEEEEeCCCC----C
Q 029517 51 IEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDL----P 126 (192)
Q Consensus 51 ~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ii~v~D~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl----~ 126 (192)
..+...-+.+.|.+|... ..|....|++|||+...+..+|+.+..+...+..+.....+|+++++++.-. +
T Consensus 72 v~gqs~lLlirdeg~~~~-----aQft~wvdavIfvf~~~d~~s~q~v~~l~~~l~~~r~r~~i~l~lvgtqd~iS~~~~ 146 (749)
T KOG0705|consen 72 VDGQSHLLLIRDEGGHPD-----AQFCQWVDAVVFVFSVEDEQSFQAVQALAHEMSSYRNISDLPLILVGTQDHISAKRP 146 (749)
T ss_pred eeccceEeeeecccCCch-----hhhhhhccceEEEEEeccccCHHHHHHHHhhcccccccccchHHhhcCcchhhcccc
Confidence 334556678888888443 2467889999999999999999999888877776554567899999988643 2
Q ss_pred CCCCHHHHHhHcCccccCCcceEEEEeeecCCCCHHHHHHHHHHHHHhcchhhhhh
Q 029517 127 DAVSADELARYLDLKKLDERVCMFEAVSGYDGFGIKESVEWLVEVMERSKRTEMLR 182 (192)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~e~~~~i~~~i~~~~~~~~~~ 182 (192)
+........+.+. ....+.+|+++|..|.++...|..+...+....+.+...
T Consensus 147 rv~~da~~r~l~~----~~krcsy~et~atyGlnv~rvf~~~~~k~i~~~~~qq~~ 198 (749)
T KOG0705|consen 147 RVITDDRARQLSA----QMKRCSYYETCATYGLNVERVFQEVAQKIVQLRKYQQLP 198 (749)
T ss_pred cccchHHHHHHHH----hcCccceeecchhhhhhHHHHHHHHHHHHHHHHhhhhcc
Confidence 2333334443333 255788999999999999999999988776554444433
No 350
>cd04178 Nucleostemin_like Nucleostemin-like. Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the
Probab=97.42 E-value=0.00027 Score=51.24 Aligned_cols=43 Identities=26% Similarity=0.252 Sum_probs=27.6
Q ss_pred CEEEEEEeCCCcccHHHHHHHHHHH-HhCCCCCCCcEEEEEeCCCCCC
Q 029517 81 HAVVFVIDAACPSRFEDSKTALEKV-LRNEDLQGAPLLILANKQDLPD 127 (192)
Q Consensus 81 d~ii~v~D~~~~~s~~~~~~~~~~i-~~~~~~~~~piiiv~nK~Dl~~ 127 (192)
|++++|+|+.++.+-.. ..+.+.+ ... .+.|+++|+||+|+.+
T Consensus 1 DvVl~VvDar~p~~~~~-~~i~~~~~l~~---~~kp~IlVlNK~DL~~ 44 (172)
T cd04178 1 DVILEVLDARDPLGCRC-PQVEEAVLQAG---GNKKLVLVLNKIDLVP 44 (172)
T ss_pred CEEEEEEECCCCCCCCC-HHHHHHHHhcc---CCCCEEEEEehhhcCC
Confidence 78999999987632211 1222221 222 3689999999999964
No 351
>COG1161 Predicted GTPases [General function prediction only]
Probab=97.42 E-value=0.00041 Score=55.33 Aligned_cols=97 Identities=23% Similarity=0.235 Sum_probs=67.6
Q ss_pred eCCCCc-ccHHHHHHhhhcCCEEEEEEeCCCcccHHHHHHHHHHHHhCCCCCCCcEEEEEeCCCCCCCCCHHHHHhHcCc
Q 029517 62 DLGGQP-GLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAVSADELARYLDL 140 (192)
Q Consensus 62 D~~G~~-~~~~~~~~~~~~~d~ii~v~D~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~ 140 (192)
+.||+. ++.......+..+|+++-|+|+.++.+-.. ..+..+.. +.|.++|+||+|+......+++.+++.
T Consensus 16 ~~~g~~~k~~~~~~~~~~~~d~vvevvDar~P~~s~~--~~l~~~v~-----~k~~i~vlNK~DL~~~~~~~~W~~~~~- 87 (322)
T COG1161 16 WFPGHMKKAKRQLKEVLKSVDVVVEVVDARDPLGTRN--PELERIVK-----EKPKLLVLNKADLAPKEVTKKWKKYFK- 87 (322)
T ss_pred CCCCchHHHHHHHHHhcccCCEEEEEEeccccccccC--ccHHHHHc-----cCCcEEEEehhhcCCHHHHHHHHHHHH-
Confidence 347764 677788888999999999999998853322 33333332 355599999999987555666777766
Q ss_pred cccCCcceEEEEeeecCCCCHHHHHHHHH
Q 029517 141 KKLDERVCMFEAVSGYDGFGIKESVEWLV 169 (192)
Q Consensus 141 ~~~~~~~~~~~~~Sa~~~~gi~e~~~~i~ 169 (192)
...+...+.++++.+.+...+..++.
T Consensus 88 ---~~~~~~~~~v~~~~~~~~~~i~~~~~ 113 (322)
T COG1161 88 ---KEEGIKPIFVSAKSRQGGKKIRKALE 113 (322)
T ss_pred ---hcCCCccEEEEeecccCccchHHHHH
Confidence 12256677888888887777765433
No 352
>PF00735 Septin: Septin; InterPro: IPR000038 Septins constitute a eukaryotic family of guanine nucleotide-binding proteins, most of which polymerise to form filaments []. Members of the family were first identified by genetic screening for Saccharomyces cerevisiae (Baker's yeast) mutants defective in cytokinesis []. Temperature-sensitive mutations in four genes, CDC3, CDC10, CDC11 and CDC12, were found to cause cell-cycle arrest and defects in bud growth and cytokinesis. The protein products of these genes localise at the division plane between mother and daughter cells, indicating a role in mother-daughter separation during cytokinesis []. Members of the family were therefore termed septins to reflect their role in septation and cell division. The identification of septin homologues in higher eukaryotes, which localise to the cleavage furrow in dividing cells, supports an orthologous function in cytokinesis. Septins have since been identified in most eukaryotes, except plants []. Septins are approximately 40-50 kDa in molecular mass, and typically comprise a conserved central core domain (more than 35% sequence identity between mammalian and yeast homologues) flanked by more divergent N- and C-termini. Most septins possess a P-loop motif in their N-terminal domain (which is characteristic of GTP-binding proteins), and a predicted C-terminal coiled-coil domain []. A number of septin interaction partners have been identified in yeast, many of which are components of the budding site selection machinery, kinase cascades or of the ubiquitination pathway. It has been proposed that septins may act as a scaffold that provides an interaction matrix for other proteins [, ]. In mammals, septins have been shown to regulate vesicle dynamics []. Mammalian septins have also been implicated in a variety of other cellular processes, including apoptosis, carcinogenesis and neurodegeneration []. This entry represents a variety of septins and homologous sequences involved in the cell division process.; GO: 0005525 GTP binding, 0007049 cell cycle; PDB: 2QAG_B 3FTQ_D 2QA5_A 2QNR_B 3TW4_A 3T5D_C.
Probab=97.39 E-value=0.00046 Score=53.99 Aligned_cols=109 Identities=15% Similarity=0.167 Sum_probs=52.2
Q ss_pred hccccHHHHHHHHhhhhccCCCCCCCCCCCCcceEEEE--EEec--CEEEEEEeCCCCcc-------cHH-------HHH
Q 029517 13 FTKTEFHTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGR--IEVS--NSKLVFWDLGGQPG-------LRS-------IWE 74 (192)
Q Consensus 13 ~kst~~~~l~~~~~~~~~~~~~~~~~~~~~T~g~~~~~--~~~~--~~~~~i~D~~G~~~-------~~~-------~~~ 74 (192)
=|||++|+|++............+.....+|..+.... +... .+.+.|+||||-.+ +.. ...
T Consensus 16 GKTTFIntL~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~l~e~~~~l~LtiiDTpGfGd~i~n~~~~~~I~~yI~~qf~ 95 (281)
T PF00735_consen 16 GKTTFINTLFNSDIISEDSSIPPPSASISRTLEIEERTVELEENGVKLNLTIIDTPGFGDNIDNSDCWEPIVDYIESQFD 95 (281)
T ss_dssp SHHHHHHHHHTSS---------S------SCEEEEEEEEEEEETCEEEEEEEEEEC-CSSSSTHCHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHhcccccccccccccccccccccceeeEEEEeccCCcceEEEEEeCCCccccccchhhhHHHHHHHHHHHH
Confidence 38999999987543321111111112333444444332 3322 46899999999221 111 111
Q ss_pred Hhh-------------hcCCEEEEEEeCCCcccHHHHH-HHHHHHHhCCCCCCCcEEEEEeCCCCCC
Q 029517 75 KYY-------------EEAHAVVFVIDAACPSRFEDSK-TALEKVLRNEDLQGAPLLILANKQDLPD 127 (192)
Q Consensus 75 ~~~-------------~~~d~ii~v~D~~~~~s~~~~~-~~~~~i~~~~~~~~~piiiv~nK~Dl~~ 127 (192)
.++ ...++++++++++... +..+. +.++.+. ...++|-|+.|+|...
T Consensus 96 ~~l~eE~~~~R~~~~D~RVH~cLYfI~pt~~~-L~~~Di~~mk~Ls-----~~vNvIPvIaKaD~lt 156 (281)
T PF00735_consen 96 SYLEEESKINRPRIEDTRVHACLYFIPPTGHG-LKPLDIEFMKRLS-----KRVNVIPVIAKADTLT 156 (281)
T ss_dssp HHHHHHTSSS-TTS----EEEEEEEE-TTSSS-S-HHHHHHHHHHT-----TTSEEEEEESTGGGS-
T ss_pred HHHHHhhcccccCcCCCCcceEEEEEcCCCcc-chHHHHHHHHHhc-----ccccEEeEEecccccC
Confidence 122 1358999999987532 22211 2333332 3478999999999754
No 353
>smart00053 DYNc Dynamin, GTPase. Large GTPases that mediate vesicle trafficking. Dynamin participates in the endocytic uptake of receptors, associated ligands, and plasma membrane following an exocytic event.
Probab=97.38 E-value=0.0014 Score=50.04 Aligned_cols=78 Identities=19% Similarity=0.224 Sum_probs=49.4
Q ss_pred EEEEEEeCCCCcc-------------cHHHHHHhhhc-CCEEEEEEeCCCcccHHHHHHHHHHHHhCCCCCCCcEEEEEe
Q 029517 56 SKLVFWDLGGQPG-------------LRSIWEKYYEE-AHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILAN 121 (192)
Q Consensus 56 ~~~~i~D~~G~~~-------------~~~~~~~~~~~-~d~ii~v~D~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~n 121 (192)
.++.++|+||-.. ...+...|+++ .+.+++|+|+...-.-.......+.+.. ...|+++|+|
T Consensus 125 ~~ltLIDlPGl~~~~~~~~~~~~~~~i~~lv~~yi~~~~~IIL~Vvda~~d~~~~d~l~ia~~ld~----~~~rti~ViT 200 (240)
T smart00053 125 LNLTLIDLPGITKVAVGDQPPDIEEQIKDMIKQFISKEECLILAVTPANVDLANSDALKLAKEVDP----QGERTIGVIT 200 (240)
T ss_pred CceEEEeCCCccccccCCccHHHHHHHHHHHHHHHhCccCeEEEEEECCCCCCchhHHHHHHHHHH----cCCcEEEEEE
Confidence 5899999999531 22356678885 4588999988643222222233333322 4689999999
Q ss_pred CCCCCCCCCHHHHHhHcC
Q 029517 122 KQDLPDAVSADELARYLD 139 (192)
Q Consensus 122 K~Dl~~~~~~~~~~~~~~ 139 (192)
|.|..+.. .++.+.++
T Consensus 201 K~D~~~~~--~~~~~~~~ 216 (240)
T smart00053 201 KLDLMDEG--TDARDILE 216 (240)
T ss_pred CCCCCCcc--HHHHHHHh
Confidence 99987532 22566555
No 354
>TIGR00993 3a0901s04IAP86 chloroplast protein import component Toc86/159, G and M domains. The long precursor of the 86K protein originally described is proposed to have three domains. The N-terminal A-domain is acidic, repetitive, weakly conserved, readily removed by proteolysis during chloroplast isolation, and not required for protein translocation. The other domains are designated G (GTPase) and M (membrane anchor); this family includes most of the G domain and all of M.
Probab=97.36 E-value=0.003 Score=54.57 Aligned_cols=108 Identities=10% Similarity=0.003 Sum_probs=58.9
Q ss_pred hccccHHHHHHHHhhhhccCCCCCCCCCCCCcceEEEEEEecCEEEEEEeCCCCcccH------H----HHHHhhh--cC
Q 029517 13 FTKTEFHTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPGLR------S----IWEKYYE--EA 80 (192)
Q Consensus 13 ~kst~~~~l~~~~~~~~~~~~~~~~~~~~~T~g~~~~~~~~~~~~~~i~D~~G~~~~~------~----~~~~~~~--~~ 80 (192)
=|||++|+|+++-...... ....|...........+..+.|+||||..... . ....++. .+
T Consensus 130 GKSSLINSILGekvf~vss-------~~~~TTr~~ei~~~idG~~L~VIDTPGL~dt~~dq~~neeILk~Ik~~Lsk~gp 202 (763)
T TIGR00993 130 GKSATINSIFGEVKFSTDA-------FGMGTTSVQEIEGLVQGVKIRVIDTPGLKSSASDQSKNEKILSSVKKFIKKNPP 202 (763)
T ss_pred CHHHHHHHHhccccccccC-------CCCCceEEEEEEEEECCceEEEEECCCCCccccchHHHHHHHHHHHHHHhcCCC
Confidence 3899999999874332111 11223322222223356789999999955321 1 1222444 47
Q ss_pred CEEEEEEeCCCcccHHHHHHHHHHHHhCCCC-CCCcEEEEEeCCCCCC
Q 029517 81 HAVVFVIDAACPSRFEDSKTALEKVLRNEDL-QGAPLLILANKQDLPD 127 (192)
Q Consensus 81 d~ii~v~D~~~~~s~~~~~~~~~~i~~~~~~-~~~piiiv~nK~Dl~~ 127 (192)
|++|+|..+.....-.+-..+++.+...... .-..+||+.|+.|...
T Consensus 203 DVVLlV~RLd~~~~D~eD~~aLr~Iq~lFG~~Iwk~tIVVFThgD~lp 250 (763)
T TIGR00993 203 DIVLYVDRLDMQTRDSNDLPLLRTITDVLGPSIWFNAIVTLTHAASAP 250 (763)
T ss_pred CEEEEEEeCCCccccHHHHHHHHHHHHHhCHHhHcCEEEEEeCCccCC
Confidence 8999998765332211222344444433211 1257889999999764
No 355
>COG5019 CDC3 Septin family protein [Cell division and chromosome partitioning / Cytoskeleton]
Probab=97.35 E-value=0.0015 Score=52.25 Aligned_cols=109 Identities=17% Similarity=0.282 Sum_probs=62.3
Q ss_pred hccccHHHHHHHHhhhhccCCCCCCCCCCCCcceEEEE--EEec--CEEEEEEeCCCCccc---HHH-----------HH
Q 029517 13 FTKTEFHTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGR--IEVS--NSKLVFWDLGGQPGL---RSI-----------WE 74 (192)
Q Consensus 13 ~kst~~~~l~~~~~~~~~~~~~~~~~~~~~T~g~~~~~--~~~~--~~~~~i~D~~G~~~~---~~~-----------~~ 74 (192)
=|||++|+|+++.........+.......||+.+.... +..+ .+.+.+.||||--++ ... ..
T Consensus 35 GKttfiNtL~~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~l~e~~~~~~l~vIDtpGfGD~idNs~~we~I~~yI~~q~d 114 (373)
T COG5019 35 GKTTFINTLFGTSLVDETEIDDIRAEGTSPTLEIKITKAELEEDGFHLNLTVIDTPGFGDFIDNSKCWEPIVDYIDDQFD 114 (373)
T ss_pred chhHHHHhhhHhhccCCCCccCcccccCCcceEEEeeeeeeecCCeEEEEEEeccCCccccccccccHHHHHHHHHHHHH
Confidence 48999999998833211111122223356777777665 3333 457999999993211 111 22
Q ss_pred Hhhh--------------cCCEEEEEEeCCCcccHHHHH-HHHHHHHhCCCCCCCcEEEEEeCCCCCC
Q 029517 75 KYYE--------------EAHAVVFVIDAACPSRFEDSK-TALEKVLRNEDLQGAPLLILANKQDLPD 127 (192)
Q Consensus 75 ~~~~--------------~~d~ii~v~D~~~~~s~~~~~-~~~~~i~~~~~~~~~piiiv~nK~Dl~~ 127 (192)
.|+. ..+|+++.+.++... +..+. +.++.+.+ ..-+|-|+-|+|...
T Consensus 115 ~yl~~E~~~~R~~~~~D~RVH~cLYFI~Ptgh~-l~~~DIe~Mk~ls~-----~vNlIPVI~KaD~lT 176 (373)
T COG5019 115 QYLDEEQKIKRNPKFKDTRVHACLYFIRPTGHG-LKPLDIEAMKRLSK-----RVNLIPVIAKADTLT 176 (373)
T ss_pred HHHHHhhccccccccccCceEEEEEEecCCCCC-CCHHHHHHHHHHhc-----ccCeeeeeeccccCC
Confidence 2321 368999999887432 33321 33344432 356788889999754
No 356
>KOG0459 consensus Polypeptide release factor 3 [Translation, ribosomal structure and biogenesis]
Probab=97.35 E-value=0.00039 Score=56.12 Aligned_cols=122 Identities=23% Similarity=0.214 Sum_probs=79.0
Q ss_pred CCCcceEEEEEEecCEEEEEEeCCCCcccHHHHHHhhhcCCEEEEEEeCCCcccHHH-------HHHHHHHHHhCCCCCC
Q 029517 41 VPTVGLNIGRIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFED-------SKTALEKVLRNEDLQG 113 (192)
Q Consensus 41 ~~T~g~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ii~v~D~~~~~s~~~-------~~~~~~~i~~~~~~~~ 113 (192)
..|++.....+.-...++.|.|.|||..|-...-.-..++|..++|+.+...+ |+. .++-....... .-
T Consensus 142 gKtvEvGrA~FEte~~~ftiLDApGHk~fv~nmI~GasqAD~~vLvisar~ge-fetgFerGgQTREha~Lakt~---gv 217 (501)
T KOG0459|consen 142 GKTVEVGRAYFETENKRFTILDAPGHKSFVPNMIGGASQADLAVLVISARKGE-FETGFEKGGQTREHAMLAKTA---GV 217 (501)
T ss_pred cceeeeeeEEEEecceeEEeeccCcccccchhhccccchhhhhhhhhhhhhch-hhcccccccchhHHHHHHHhh---cc
Confidence 56777777778878889999999999988765555567789999999874322 221 11111111111 34
Q ss_pred CcEEEEEeCCCCCCCC----CHHHHHhHcC-----ccccCCcceEEEEeeecCCCCHHHHHH
Q 029517 114 APLLILANKQDLPDAV----SADELARYLD-----LKKLDERVCMFEAVSGYDGFGIKESVE 166 (192)
Q Consensus 114 ~piiiv~nK~Dl~~~~----~~~~~~~~~~-----~~~~~~~~~~~~~~Sa~~~~gi~e~~~ 166 (192)
...++++||+|-+... -.++..+.+. +.........++++|..+|.++.+..+
T Consensus 218 ~~lVv~vNKMddPtvnWs~eRy~E~~~k~~~fLr~~g~n~~~d~~f~p~sg~tG~~~k~~~~ 279 (501)
T KOG0459|consen 218 KHLIVLINKMDDPTVNWSNERYEECKEKLQPFLRKLGFNPKPDKHFVPVSGLTGANVKDRTD 279 (501)
T ss_pred ceEEEEEEeccCCccCcchhhHHHHHHHHHHHHHHhcccCCCCceeeecccccccchhhccc
Confidence 6899999999987622 2223222222 111123467799999999999998764
No 357
>KOG2484 consensus GTPase [General function prediction only]
Probab=97.14 E-value=0.0006 Score=54.87 Aligned_cols=75 Identities=23% Similarity=0.269 Sum_probs=50.5
Q ss_pred EEeCCCCcccHHHHHHhhhcCCEEEEEEeCCCcccHH--HHHHHHHHHHhCCCCCCCcEEEEEeCCCCCCCCCHHHHHhH
Q 029517 60 FWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFE--DSKTALEKVLRNEDLQGAPLLILANKQDLPDAVSADELARY 137 (192)
Q Consensus 60 i~D~~G~~~~~~~~~~~~~~~d~ii~v~D~~~~~s~~--~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~ 137 (192)
.|+-.....|.......+..+|+||.|.|+.||.+=. ++.++ +++.. .+...|+|+||+|+......+++..+
T Consensus 127 ~~~~~s~kaY~ke~rkvve~sDVVleVlDARDPlgtR~~~vE~~---V~~~~--gnKkLILVLNK~DLVPrEv~e~Wl~Y 201 (435)
T KOG2484|consen 127 LDNEESKKAYDKEFRKVVEASDVVLEVLDARDPLGTRCPEVEEA---VLQAH--GNKKLILVLNKIDLVPREVVEKWLVY 201 (435)
T ss_pred ccchhhHHHHHHHHHHHHhhhheEEEeeeccCCCCCCChhHHHH---HHhcc--CCceEEEEeehhccCCHHHHHHHHHH
Confidence 3333334456667777788999999999999885432 23333 22221 34899999999999865555666666
Q ss_pred cC
Q 029517 138 LD 139 (192)
Q Consensus 138 ~~ 139 (192)
+.
T Consensus 202 Lr 203 (435)
T KOG2484|consen 202 LR 203 (435)
T ss_pred HH
Confidence 65
No 358
>COG0378 HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription]
Probab=97.10 E-value=0.00047 Score=50.40 Aligned_cols=101 Identities=19% Similarity=0.115 Sum_probs=60.9
Q ss_pred EEEEEEeCCCCcccHHHHHHhhhcCC-EEEEEEeCCCcccHHHHHHHHHHHHhCCCCCCCcEEEEEeCCCCCCCCCH--H
Q 029517 56 SKLVFWDLGGQPGLRSIWEKYYEEAH-AVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAVSA--D 132 (192)
Q Consensus 56 ~~~~i~D~~G~~~~~~~~~~~~~~~d-~ii~v~D~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~~~~~--~ 132 (192)
..+.|.+.+|.-. .... +.-.| .-|+|+|.+..+..-+ +....--..=++|+||.|+...+.. +
T Consensus 97 ~Dll~iEs~GNL~--~~~s--p~L~d~~~v~VidvteGe~~P~---------K~gP~i~~aDllVInK~DLa~~v~~dle 163 (202)
T COG0378 97 LDLLFIESVGNLV--CPFS--PDLGDHLRVVVIDVTEGEDIPR---------KGGPGIFKADLLVINKTDLAPYVGADLE 163 (202)
T ss_pred CCEEEEecCccee--cccC--cchhhceEEEEEECCCCCCCcc---------cCCCceeEeeEEEEehHHhHHHhCccHH
Confidence 4666777777210 0001 11134 6788888886642221 1000001245789999999874333 5
Q ss_pred HHHhHcCccccCCcceEEEEeeecCCCCHHHHHHHHHHHH
Q 029517 133 ELARYLDLKKLDERVCMFEAVSGYDGFGIKESVEWLVEVM 172 (192)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~e~~~~i~~~i 172 (192)
...+.++. -....+++++|+++|+|++++++|+....
T Consensus 164 vm~~da~~---~np~~~ii~~n~ktg~G~~~~~~~i~~~~ 200 (202)
T COG0378 164 VMARDAKE---VNPEAPIIFTNLKTGEGLDEWLRFIEPQA 200 (202)
T ss_pred HHHHHHHH---hCCCCCEEEEeCCCCcCHHHHHHHHHhhc
Confidence 55444441 14578999999999999999999987643
No 359
>KOG1424 consensus Predicted GTP-binding protein MMR1 [General function prediction only]
Probab=97.09 E-value=0.0012 Score=54.79 Aligned_cols=77 Identities=25% Similarity=0.333 Sum_probs=55.8
Q ss_pred HHHHHHhhhcCCEEEEEEeCCCcccHH--HHHHHHHHHHhCCCCCCCcEEEEEeCCCCCCCCCHHHHHhHcCccccCCcc
Q 029517 70 RSIWEKYYEEAHAVVFVIDAACPSRFE--DSKTALEKVLRNEDLQGAPLLILANKQDLPDAVSADELARYLDLKKLDERV 147 (192)
Q Consensus 70 ~~~~~~~~~~~d~ii~v~D~~~~~s~~--~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~ 147 (192)
+.+|. .+..+|.||.++|+.++--|. .+..++..+. ..+..+++.||+||........+.+++. .++
T Consensus 166 RQLWR-VlErSDivvqIVDARnPllfr~~dLe~Yvke~d-----~~K~~~LLvNKaDLl~~~qr~aWa~YF~-----~~n 234 (562)
T KOG1424|consen 166 RQLWR-VLERSDIVVQIVDARNPLLFRSPDLEDYVKEVD-----PSKANVLLVNKADLLPPEQRVAWAEYFR-----QNN 234 (562)
T ss_pred HHHHH-HHhhcceEEEEeecCCccccCChhHHHHHhccc-----cccceEEEEehhhcCCHHHHHHHHHHHH-----hcC
Confidence 44453 578999999999999885442 3334433332 3477899999999987655667777776 667
Q ss_pred eEEEEeeecC
Q 029517 148 CMFEAVSGYD 157 (192)
Q Consensus 148 ~~~~~~Sa~~ 157 (192)
++++.-||..
T Consensus 235 i~~vf~SA~~ 244 (562)
T KOG1424|consen 235 IPVVFFSALA 244 (562)
T ss_pred ceEEEEeccc
Confidence 8999899877
No 360
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=97.04 E-value=0.00076 Score=52.74 Aligned_cols=56 Identities=21% Similarity=0.238 Sum_probs=40.6
Q ss_pred CCcEEEEEeCCCCCCCC--CHHHHHhHcCccccCCcceEEEEeeecCCCCHHHHHHHHHHH
Q 029517 113 GAPLLILANKQDLPDAV--SADELARYLDLKKLDERVCMFEAVSGYDGFGIKESVEWLVEV 171 (192)
Q Consensus 113 ~~piiiv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~e~~~~i~~~ 171 (192)
..+-++++||+|+.... +.+.+.+.+.. -....+++++||++|+|++++.+||.++
T Consensus 230 ~~ADIVVLNKiDLl~~~~~dle~~~~~lr~---lnp~a~I~~vSA~tGeGld~L~~~L~~~ 287 (290)
T PRK10463 230 AAASLMLLNKVDLLPYLNFDVEKCIACARE---VNPEIEIILISATSGEGMDQWLNWLETQ 287 (290)
T ss_pred hcCcEEEEEhHHcCcccHHHHHHHHHHHHh---hCCCCcEEEEECCCCCCHHHHHHHHHHh
Confidence 35678999999997532 23344444331 1346789999999999999999999763
No 361
>cd03110 Fer4_NifH_child This protein family's function is unkown. It contains nucleotide binding site. It uses NTP as energy source to transfer electron or ion.
Probab=96.99 E-value=0.0099 Score=43.06 Aligned_cols=78 Identities=28% Similarity=0.354 Sum_probs=54.6
Q ss_pred cCEEEEEEeCCCCcccHHHHHHhhhcCCEEEEEEeCCCcccHHHHHHHHHHHHhCCCCCCCcEEEEEeCCCCCCCCCHHH
Q 029517 54 SNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAVSADE 133 (192)
Q Consensus 54 ~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ii~v~D~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~~~~~~~ 133 (192)
..+.+.|+|+|+.... .....+..+|.+++++.++ ..+...+...++.+.+. +.|+.+|+||.|.... ..++
T Consensus 91 ~~~d~viiDtpp~~~~--~~~~~l~~aD~vliv~~~~-~~~~~~~~~~~~~l~~~----~~~~~vV~N~~~~~~~-~~~~ 162 (179)
T cd03110 91 EGAELIIIDGPPGIGC--PVIASLTGADAALLVTEPT-PSGLHDLERAVELVRHF----GIPVGVVINKYDLNDE-IAEE 162 (179)
T ss_pred cCCCEEEEECcCCCcH--HHHHHHHcCCEEEEEecCC-cccHHHHHHHHHHHHHc----CCCEEEEEeCCCCCcc-hHHH
Confidence 4678999999976432 3345678899999999987 44667777776655443 4678899999997543 3345
Q ss_pred HHhHcC
Q 029517 134 LARYLD 139 (192)
Q Consensus 134 ~~~~~~ 139 (192)
+.++++
T Consensus 163 ~~~~~~ 168 (179)
T cd03110 163 IEDYCE 168 (179)
T ss_pred HHHHHH
Confidence 555554
No 362
>KOG1547 consensus Septin CDC10 and related P-loop GTPases [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms; Cytoskeleton]
Probab=96.89 E-value=0.014 Score=44.30 Aligned_cols=137 Identities=17% Similarity=0.192 Sum_probs=72.0
Q ss_pred hccccHHHHHHHHhhhhccCCCCCCCCCCCCcceEEEE--EEecC--EEEEEEeCCCCccc---HHHH-----------H
Q 029517 13 FTKTEFHTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGR--IEVSN--SKLVFWDLGGQPGL---RSIW-----------E 74 (192)
Q Consensus 13 ~kst~~~~l~~~~~~~~~~~~~~~~~~~~~T~g~~~~~--~~~~~--~~~~i~D~~G~~~~---~~~~-----------~ 74 (192)
=|||+.|||+.....-. ..++..-..++.|+.+.... +..++ .++.+.||||-.+. ...| .
T Consensus 58 gkstlinTlf~s~v~~~-s~~~~~~~p~pkT~eik~~thvieE~gVklkltviDTPGfGDqInN~ncWePI~kyIneQye 136 (336)
T KOG1547|consen 58 GKSTLINTLFKSHVSDS-SSSDNSAEPIPKTTEIKSITHVIEEKGVKLKLTVIDTPGFGDQINNDNCWEPIEKYINEQYE 136 (336)
T ss_pred CchhhHHHHHHHHHhhc-cCCCcccCcccceEEEEeeeeeeeecceEEEEEEecCCCcccccCccchhHHHHHHHHHHHH
Confidence 37889999885443311 11122223445565554432 44444 47889999993211 1112 2
Q ss_pred Hhhh--------------cCCEEEEEEeCCCcccHHHHH-HHHHHHHhCCCCCCCcEEEEEeCCCCCCCCCHHHHHhHcC
Q 029517 75 KYYE--------------EAHAVVFVIDAACPSRFEDSK-TALEKVLRNEDLQGAPLLILANKQDLPDAVSADELARYLD 139 (192)
Q Consensus 75 ~~~~--------------~~d~ii~v~D~~~~~s~~~~~-~~~~~i~~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~~ 139 (192)
.|++ ..+|+++.+.++. .++..+. +.++.+.+. .-++-|+-|+|-....+..++.+...
T Consensus 137 ~yL~eElni~R~kripDTRVHcclyFi~ptG-hsLrplDieflkrLt~v-----vNvvPVIakaDtlTleEr~~FkqrI~ 210 (336)
T KOG1547|consen 137 QYLREELNIAREKRIPDTRVHCCLYFIPPTG-HSLRPLDIEFLKRLTEV-----VNVVPVIAKADTLTLEERSAFKQRIR 210 (336)
T ss_pred HHHHHHHhHHhhhcCCCceEEEEEEEeCCCC-CccCcccHHHHHHHhhh-----heeeeeEeecccccHHHHHHHHHHHH
Confidence 2222 3688999998873 3343332 233333332 45777888999665444444444443
Q ss_pred ccccCCcceEEEEeeecC
Q 029517 140 LKKLDERVCMFEAVSGYD 157 (192)
Q Consensus 140 ~~~~~~~~~~~~~~Sa~~ 157 (192)
+++..+++.+|+-.+.+
T Consensus 211 -~el~~~~i~vYPq~~fd 227 (336)
T KOG1547|consen 211 -KELEKHGIDVYPQDSFD 227 (336)
T ss_pred -HHHHhcCcccccccccc
Confidence 12225566666665544
No 363
>KOG2655 consensus Septin family protein (P-loop GTPase) [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton; Intracellular trafficking, secretion, and vesicular transport]
Probab=96.89 E-value=0.017 Score=46.44 Aligned_cols=109 Identities=18% Similarity=0.224 Sum_probs=60.8
Q ss_pred hhccccHHHHHHHHhhhhccCCCCCCCCCCCCcceEEEEE--Eec--CEEEEEEeCCCCcc-------c-------HHHH
Q 029517 12 IFTKTEFHTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRI--EVS--NSKLVFWDLGGQPG-------L-------RSIW 73 (192)
Q Consensus 12 ~~kst~~~~l~~~~~~~~~~~~~~~~~~~~~T~g~~~~~~--~~~--~~~~~i~D~~G~~~-------~-------~~~~ 73 (192)
+-|||++|+|+.+-......++ ........|..+..... ..+ .+++.+.||||--+ + ....
T Consensus 32 lGKsTfiNsLf~~~l~~~~~~~-~~~~~~~~t~~i~~~~~~iee~g~~l~LtvidtPGfGD~vdns~~w~pi~~yi~~q~ 110 (366)
T KOG2655|consen 32 LGKSTFINSLFLTDLSGNREVP-GASERIKETVEIESTKVEIEENGVKLNLTVIDTPGFGDAVDNSNCWRPIVNYIDSQF 110 (366)
T ss_pred ccHHHHHHHHHhhhccCCcccC-CcccCccccceeeeeeeeecCCCeEEeeEEeccCCCcccccccccchhhhHHHHHHH
Confidence 4589999999877333222221 12223333566655543 223 46799999999221 1 1122
Q ss_pred HHhhh-------------cCCEEEEEEeCCCcccHHHHH-HHHHHHHhCCCCCCCcEEEEEeCCCCCC
Q 029517 74 EKYYE-------------EAHAVVFVIDAACPSRFEDSK-TALEKVLRNEDLQGAPLLILANKQDLPD 127 (192)
Q Consensus 74 ~~~~~-------------~~d~ii~v~D~~~~~s~~~~~-~~~~~i~~~~~~~~~piiiv~nK~Dl~~ 127 (192)
..|+. ..+|+++.+.++... +..+. +.++.+. ....+|-|+-|+|...
T Consensus 111 ~~yl~~E~~~~R~~~~D~RVH~cLYFI~P~ghg-L~p~Di~~Mk~l~-----~~vNiIPVI~KaD~lT 172 (366)
T KOG2655|consen 111 DQYLDEESRLNRSKIKDNRVHCCLYFISPTGHG-LKPLDIEFMKKLS-----KKVNLIPVIAKADTLT 172 (366)
T ss_pred HHHHhhhccCCcccccCCceEEEEEEeCCCCCC-CcHhhHHHHHHHh-----ccccccceeeccccCC
Confidence 23331 468999999887432 22221 2333332 3567888899999764
No 364
>TIGR00092 GTP-binding protein YchF. This predicted GTP-binding protein is found in a single copy in every complete bacterial genome, and is found in Eukaryotes. A more distantly related protein, separated from this model, is found in the archaea. It is known to bind GTP and double-stranded nucleic acid. It is suggested to belong to a nucleoprotein complex and act as a translation factor.
Probab=96.84 E-value=0.0039 Score=50.46 Aligned_cols=75 Identities=20% Similarity=0.210 Sum_probs=50.3
Q ss_pred hccccHHHHHHHHhhhhccCCCCCCCCCCCCcceEEEEE----------E---ecCEEEEEEeCCCCc-------ccHHH
Q 029517 13 FTKTEFHTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRI----------E---VSNSKLVFWDLGGQP-------GLRSI 72 (192)
Q Consensus 13 ~kst~~~~l~~~~~~~~~~~~~~~~~~~~~T~g~~~~~~----------~---~~~~~~~i~D~~G~~-------~~~~~ 72 (192)
=|||+||+|.+...+ ..++++.++..|..|+-...- . .....+++.|+||.- .....
T Consensus 14 GKSTlfnaLT~~~~~---~~a~ypftTi~p~~g~v~v~d~r~d~L~~~~~~~~~~~a~i~~~DiaGlv~gAs~g~Glgn~ 90 (368)
T TIGR00092 14 GKSTLFAATTNLLGN---EAANPPFTTIEPNAGVVNPSDPRLDLLAIYIKPEKVPPTTTEFVDIAGLVGGASKGEGLGNQ 90 (368)
T ss_pred ChHHHHHHHhCCCcc---ccCCCCCCCCCCceeEEEechhHHHHHHHHhCCcCcCCceEEEEeccccccchhcccCcchH
Confidence 378888888655321 455777777777777643321 1 123478999999943 23445
Q ss_pred HHHhhhcCCEEEEEEeCC
Q 029517 73 WEKYYEEAHAVVFVIDAA 90 (192)
Q Consensus 73 ~~~~~~~~d~ii~v~D~~ 90 (192)
....++.+|++++|+|+.
T Consensus 91 fL~~ir~~d~l~hVvr~f 108 (368)
T TIGR00092 91 FLANIREVDIIQHVVRCF 108 (368)
T ss_pred HHHHHHhCCEEEEEEeCC
Confidence 666789999999999985
No 365
>KOG0447 consensus Dynamin-like GTP binding protein [General function prediction only]
Probab=96.83 E-value=0.044 Score=46.43 Aligned_cols=100 Identities=18% Similarity=0.329 Sum_probs=65.6
Q ss_pred EEecCE-EEEEEeCCCC-------------cccHHHHHHhhhcCCEEEEEEeCCCcccHHHHHHHHHHHHhCCCCCCCcE
Q 029517 51 IEVSNS-KLVFWDLGGQ-------------PGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPL 116 (192)
Q Consensus 51 ~~~~~~-~~~i~D~~G~-------------~~~~~~~~~~~~~~d~ii~v~D~~~~~s~~~~~~~~~~i~~~~~~~~~pi 116 (192)
+.+.+. ++.++|.||- +....+...|+.+.++||+|+-- .|.+.=+..+..+...++..+...
T Consensus 406 VKGPgLqRMVLVDLPGvIsTvT~dMA~dTKd~I~~msKayM~NPNAIILCIQD---GSVDAERSnVTDLVsq~DP~GrRT 482 (980)
T KOG0447|consen 406 VKGPGLQRMVLVDLPGVINTVTSGMAPDTKETIFSISKAYMQNPNAIILCIQD---GSVDAERSIVTDLVSQMDPHGRRT 482 (980)
T ss_pred ecCCCcceeEEecCCchhhhhcccccccchHHHHHHHHHHhcCCCeEEEEecc---CCcchhhhhHHHHHHhcCCCCCee
Confidence 444454 7899999991 23345678899999999999942 223332344455555566678899
Q ss_pred EEEEeCCCCCC--CCCHHHHHhHcCccccCCcceEEEEe
Q 029517 117 LILANKQDLPD--AVSADELARYLDLKKLDERVCMFEAV 153 (192)
Q Consensus 117 iiv~nK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (192)
|+|++|.|+.+ .-++..+.+.+.-+.+.-....||.+
T Consensus 483 IfVLTKVDlAEknlA~PdRI~kIleGKLFPMKALGYfaV 521 (980)
T KOG0447|consen 483 IFVLTKVDLAEKNVASPSRIQQIIEGKLFPMKALGYFAV 521 (980)
T ss_pred EEEEeecchhhhccCCHHHHHHHHhcCccchhhcceeEE
Confidence 99999999987 34667788777633333333444444
No 366
>KOG1143 consensus Predicted translation elongation factor [Translation, ribosomal structure and biogenesis]
Probab=96.66 E-value=0.012 Score=47.52 Aligned_cols=108 Identities=20% Similarity=0.282 Sum_probs=66.0
Q ss_pred EEEEEEeCCCCcccHHHHHHhhh--cCCEEEEEEeCCCcccHHHHHHHHHHHHhCCCCCCCcEEEEEeCCCCCCCCCHH-
Q 029517 56 SKLVFWDLGGQPGLRSIWEKYYE--EAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAVSAD- 132 (192)
Q Consensus 56 ~~~~i~D~~G~~~~~~~~~~~~~--~~d~ii~v~D~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~~~~~~- 132 (192)
--+.+.|.+|+.+|......-+. ..+++.+|+.+...-.+.. ++-+- +... -++|+.++.+|+|+.+.-..+
T Consensus 249 KlvTfiDLAGh~kY~~TTi~gLtgY~Ph~A~LvVsA~~Gi~~tT-rEHLg-l~~A---L~iPfFvlvtK~Dl~~~~~~~~ 323 (591)
T KOG1143|consen 249 KLVTFIDLAGHAKYQKTTIHGLTGYTPHFACLVVSADRGITWTT-REHLG-LIAA---LNIPFFVLVTKMDLVDRQGLKK 323 (591)
T ss_pred ceEEEeecccchhhheeeeeecccCCCceEEEEEEcCCCCcccc-HHHHH-HHHH---hCCCeEEEEEeeccccchhHHH
Confidence 35889999999988765433332 2678888888765544432 12222 2222 379999999999996521111
Q ss_pred ---HHHhHcCc---------------------cccCCcceEEEEeeecCCCCHHHHHHHH
Q 029517 133 ---ELARYLDL---------------------KKLDERVCMFEAVSGYDGFGIKESVEWL 168 (192)
Q Consensus 133 ---~~~~~~~~---------------------~~~~~~~~~~~~~Sa~~~~gi~e~~~~i 168 (192)
++.+.+.. +....+-.++|.+|+..|+|++-+...+
T Consensus 324 tv~~l~nll~~~Gc~kvp~~Vt~~ddAv~Aaq~~~s~nivPif~vSsVsGegl~ll~~fL 383 (591)
T KOG1143|consen 324 TVKDLSNLLAKAGCTKVPKRVTTKDDAVKAAQELCSGNIVPIFAVSSVSGEGLRLLRTFL 383 (591)
T ss_pred HHHHHHHHHhhcCccccceEeechHHHHHHHHHhccCCceeEEEEeecCccchhHHHHHH
Confidence 11111110 0112456889999999999987665443
No 367
>KOG0469 consensus Elongation factor 2 [Translation, ribosomal structure and biogenesis]
Probab=96.54 E-value=0.0048 Score=51.47 Aligned_cols=81 Identities=17% Similarity=0.220 Sum_probs=56.8
Q ss_pred cCEEEEEEeCCCCcccHHHHHHhhhcCCEEEEEEeCCCcccHHHHHHHHHHHHhCCCCCCCcEEEEEeCCCCCC---CCC
Q 029517 54 SNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPD---AVS 130 (192)
Q Consensus 54 ~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ii~v~D~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~---~~~ 130 (192)
.++-++++|.|||-+|++.....++-.||.+.|+|.-+.--.+. ...+.+.... .-+| +++.||.|..- +.+
T Consensus 96 ~~FLiNLIDSPGHVDFSSEVTAALRVTDGALVVVDcv~GvCVQT-ETVLrQA~~E---RIkP-vlv~NK~DRAlLELq~~ 170 (842)
T KOG0469|consen 96 NGFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSGVCVQT-ETVLRQAIAE---RIKP-VLVMNKMDRALLELQLS 170 (842)
T ss_pred cceeEEeccCCCcccchhhhhheeEeccCcEEEEEccCceEech-HHHHHHHHHh---hccc-eEEeehhhHHHHhhcCC
Confidence 46789999999999999999999999999999999875532222 1122222222 2245 46799999643 667
Q ss_pred HHHHHhHcC
Q 029517 131 ADELARYLD 139 (192)
Q Consensus 131 ~~~~~~~~~ 139 (192)
.|++.+.+.
T Consensus 171 ~EeLyqtf~ 179 (842)
T KOG0469|consen 171 QEELYQTFQ 179 (842)
T ss_pred HHHHHHHHH
Confidence 777666554
No 368
>KOG1491 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]
Probab=95.99 E-value=0.011 Score=46.93 Aligned_cols=76 Identities=20% Similarity=0.194 Sum_probs=49.3
Q ss_pred hhhccccHHHHHHHHhhhhccCCCCCCCCCCCCcceEEE---E-------EE---ecCEEEEEEeCCCC-------cccH
Q 029517 11 YIFTKTEFHTLLEKLKSVYSNVEGLPPDRIVPTVGLNIG---R-------IE---VSNSKLVFWDLGGQ-------PGLR 70 (192)
Q Consensus 11 ~~~kst~~~~l~~~~~~~~~~~~~~~~~~~~~T~g~~~~---~-------~~---~~~~~~~i~D~~G~-------~~~~ 70 (192)
++=|||+||+|.+.-.+ ..++++.+..|..+.--- + +. .....++++|++|. +...
T Consensus 30 NvGKST~fnalT~~~a~----~~NfPF~TIdPn~a~V~v~d~Rfd~l~~~Y~~~~~vpa~l~v~DIAGLvkGAs~G~GLG 105 (391)
T KOG1491|consen 30 NVGKSTFFNALTKSKAG----AANFPFCTIDPNEARVEVPDSRFDLLCPIYGPKSKVPAFLTVYDIAGLVKGASAGEGLG 105 (391)
T ss_pred CCchHHHHHHHhcCCCC----ccCCCcceeccccceeecCchHHHHHHHhcCCcceeeeeEEEEeecccccCcccCcCch
Confidence 34589999998765443 446666665555442111 0 11 12457999999993 2345
Q ss_pred HHHHHhhhcCCEEEEEEeCC
Q 029517 71 SIWEKYYEEAHAVVFVIDAA 90 (192)
Q Consensus 71 ~~~~~~~~~~d~ii~v~D~~ 90 (192)
......++.+|+++.|+++.
T Consensus 106 N~FLs~iR~vDaifhVVr~f 125 (391)
T KOG1491|consen 106 NKFLSHIRHVDAIFHVVRAF 125 (391)
T ss_pred HHHHHhhhhccceeEEEEec
Confidence 55667789999999999764
No 369
>KOG2423 consensus Nucleolar GTPase [General function prediction only]
Probab=95.68 E-value=0.092 Score=42.86 Aligned_cols=63 Identities=27% Similarity=0.266 Sum_probs=39.2
Q ss_pred HHHhhhcCCEEEEEEeCCCcccHHHHHHHHHHHHhCCCCCCCcEEEEEeCCCCCCCCCHHHHHhHc
Q 029517 73 WEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAVSADELARYL 138 (192)
Q Consensus 73 ~~~~~~~~d~ii~v~D~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~ 138 (192)
....+..+|++|-|+|+.|+--=.. ..+...++.. .++.+++.|+||+||...--...+...+
T Consensus 207 LyKViDSSDVvvqVlDARDPmGTrc--~~ve~ylkke-~phKHli~vLNKvDLVPtwvt~~Wv~~l 269 (572)
T KOG2423|consen 207 LYKVIDSSDVVVQVLDARDPMGTRC--KHVEEYLKKE-KPHKHLIYVLNKVDLVPTWVTAKWVRHL 269 (572)
T ss_pred HHHhhcccceeEEeeeccCCccccc--HHHHHHHhhc-CCcceeEEEeeccccccHHHHHHHHHHH
Confidence 3445678999999999988731111 2333333322 2678999999999997643333333333
No 370
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=95.67 E-value=0.13 Score=40.04 Aligned_cols=96 Identities=16% Similarity=0.070 Sum_probs=55.2
Q ss_pred cCEEEEEEeCCCCcccHHHH----HH---hhh-----cCCEEEEEEeCCCcccHHHHHHHHHHHHhCCCCCCCcEEEEEe
Q 029517 54 SNSKLVFWDLGGQPGLRSIW----EK---YYE-----EAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILAN 121 (192)
Q Consensus 54 ~~~~~~i~D~~G~~~~~~~~----~~---~~~-----~~d~ii~v~D~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~n 121 (192)
.++.+.++||||........ .. ... .++..++|+|++.. .+.+. ....+.+.. -+.-++.|
T Consensus 153 ~~~D~ViIDT~G~~~~d~~~~~el~~~~~~~~~~~~~~~~~~~LVl~a~~~--~~~~~-~~~~f~~~~----~~~g~IlT 225 (272)
T TIGR00064 153 RNIDVVLIDTAGRLQNKVNLMDELKKIKRVIKKVDKDAPDEVLLVLDATTG--QNALE-QAKVFNEAV----GLTGIILT 225 (272)
T ss_pred CCCCEEEEeCCCCCcchHHHHHHHHHHHHHHhcccCCCCceEEEEEECCCC--HHHHH-HHHHHHhhC----CCCEEEEE
Confidence 45789999999976433221 11 111 38999999999743 22222 223332221 24678899
Q ss_pred CCCCCCCCCHHHHHhHcCccccCCcceEEEEeeecCCCCHHHHH
Q 029517 122 KQDLPDAVSADELARYLDLKKLDERVCMFEAVSGYDGFGIKESV 165 (192)
Q Consensus 122 K~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~e~~ 165 (192)
|.|..... -.+..... ..+.|+..++ +|++++++-
T Consensus 226 KlDe~~~~--G~~l~~~~-----~~~~Pi~~~~--~Gq~~~dl~ 260 (272)
T TIGR00064 226 KLDGTAKG--GIILSIAY-----ELKLPIKFIG--VGEKIDDLA 260 (272)
T ss_pred ccCCCCCc--cHHHHHHH-----HHCcCEEEEe--CCCChHhCc
Confidence 99976532 22233332 2245666666 788887764
No 371
>cd02038 FleN-like FleN is a member of the Fer4_NifH superfamily. It shares the common function as an ATPase, with the ATP-binding domain at the N-terminus. In Pseudomonas aeruginosa, FleN gene is involved in regulating the number of flagella and chemotactic motility by influencing FleQ activity.
Probab=95.36 E-value=0.1 Score=36.29 Aligned_cols=66 Identities=15% Similarity=0.292 Sum_probs=46.4
Q ss_pred EEEEEEeCCCCcccHHHHHHhhhcCCEEEEEEeCCCcccHHHHHHHHHHHHhCCCCCCCcEEEEEeCCCCC
Q 029517 56 SKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLP 126 (192)
Q Consensus 56 ~~~~i~D~~G~~~~~~~~~~~~~~~d~ii~v~D~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~ 126 (192)
+.+.++|+|+... ......+..+|.++++++++ ..++..+...++.+.+.. ...++.++.|+.+..
T Consensus 45 yd~VIiD~p~~~~--~~~~~~l~~aD~vviv~~~~-~~s~~~~~~~l~~l~~~~--~~~~~~lVvN~~~~~ 110 (139)
T cd02038 45 YDYIIIDTGAGIS--DNVLDFFLAADEVIVVTTPE-PTSITDAYALIKKLAKQL--RVLNFRVVVNRAESP 110 (139)
T ss_pred CCEEEEECCCCCC--HHHHHHHHhCCeEEEEcCCC-hhHHHHHHHHHHHHHHhc--CCCCEEEEEeCCCCH
Confidence 6789999998643 23346788999999999986 444555555555554432 346788999999743
No 372
>KOG0463 consensus GTP-binding protein GP-1 [General function prediction only]
Probab=95.33 E-value=0.06 Score=43.60 Aligned_cols=114 Identities=22% Similarity=0.203 Sum_probs=66.9
Q ss_pred EEEEecCE-EEEEEeCCCCcccHHHHHHhh--hcCCEEEEEEeCCCcccHHHHHHHHHHHHhCCCCCCCcEEEEEeCCCC
Q 029517 49 GRIEVSNS-KLVFWDLGGQPGLRSIWEKYY--EEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDL 125 (192)
Q Consensus 49 ~~~~~~~~-~~~i~D~~G~~~~~~~~~~~~--~~~d~ii~v~D~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl 125 (192)
..+..+.. -+.|+|.+|+++|....-.-+ .-.|.-.+|+.+.-. -..-.++-+-..+. ...|+.+|.+|+|+
T Consensus 211 vkIce~saKviTFIDLAGHEkYLKTTvFGMTGH~PDf~MLMiGaNaG-IiGmTKEHLgLALa----L~VPVfvVVTKIDM 285 (641)
T KOG0463|consen 211 VKICEDSAKVITFIDLAGHEKYLKTTVFGMTGHMPDFTMLMIGANAG-IIGMTKEHLGLALA----LHVPVFVVVTKIDM 285 (641)
T ss_pred eeeccccceeEEEEeccchhhhhheeeeccccCCCCceEEEeccccc-ceeccHHhhhhhhh----hcCcEEEEEEeecc
Confidence 33443333 478999999998876433222 236777888876422 11111122221222 36899999999998
Q ss_pred CCCCCHHH----HHhHcCcc---------------------ccCCcceEEEEeeecCCCCHHHHHHH
Q 029517 126 PDAVSADE----LARYLDLK---------------------KLDERVCMFEAVSGYDGFGIKESVEW 167 (192)
Q Consensus 126 ~~~~~~~~----~~~~~~~~---------------------~~~~~~~~~~~~Sa~~~~gi~e~~~~ 167 (192)
-.++-.++ +..+++.. -.+.+-+++|.+|-.+|.|+.-+...
T Consensus 286 CPANiLqEtmKll~rllkS~gcrK~PvlVrs~DDVv~~A~NF~Ser~CPIFQvSNVtG~NL~LLkmF 352 (641)
T KOG0463|consen 286 CPANILQETMKLLTRLLKSPGCRKLPVLVRSMDDVVHAAVNFPSERVCPIFQVSNVTGTNLPLLKMF 352 (641)
T ss_pred CcHHHHHHHHHHHHHHhcCCCcccCcEEEecccceEEeeccCccccccceEEeccccCCChHHHHHH
Confidence 66433332 33333310 11345688999999999998766544
No 373
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=95.31 E-value=0.1 Score=41.69 Aligned_cols=96 Identities=17% Similarity=0.115 Sum_probs=54.9
Q ss_pred cCEEEEEEeCCCCcccHH----HHHHhh--------hcCCEEEEEEeCCCcccHHHHHHHHHHHHhCCCCCCCcEEEEEe
Q 029517 54 SNSKLVFWDLGGQPGLRS----IWEKYY--------EEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILAN 121 (192)
Q Consensus 54 ~~~~~~i~D~~G~~~~~~----~~~~~~--------~~~d~ii~v~D~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~n 121 (192)
.++.+.++||||...... ....+. ...+..++|+|++.. .+.+.. ...+.+. --+--+|.|
T Consensus 195 ~~~D~ViIDTaGr~~~~~~l~~eL~~~~~v~~~~~~~~p~~~~LVl~a~~g--~~~~~~-a~~f~~~----~~~~giIlT 267 (318)
T PRK10416 195 RGIDVLIIDTAGRLHNKTNLMEELKKIKRVIKKADPDAPHEVLLVLDATTG--QNALSQ-AKAFHEA----VGLTGIILT 267 (318)
T ss_pred CCCCEEEEeCCCCCcCCHHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCC--hHHHHH-HHHHHhh----CCCCEEEEE
Confidence 457899999999653211 122222 246788999999854 222222 1222211 134568899
Q ss_pred CCCCCCCCCHHHHHhHcCccccCCcceEEEEeeecCCCCHHHHH
Q 029517 122 KQDLPDAVSADELARYLDLKKLDERVCMFEAVSGYDGFGIKESV 165 (192)
Q Consensus 122 K~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~e~~ 165 (192)
|.|..... -.+.+.+. ..+.|+..++ +|++++++-
T Consensus 268 KlD~t~~~--G~~l~~~~-----~~~~Pi~~v~--~Gq~~~Dl~ 302 (318)
T PRK10416 268 KLDGTAKG--GVVFAIAD-----ELGIPIKFIG--VGEGIDDLQ 302 (318)
T ss_pred CCCCCCCc--cHHHHHHH-----HHCCCEEEEe--CCCChhhCc
Confidence 99965422 23333333 3356777777 889887763
No 374
>cd02036 MinD Bacterial cell division requires the formation of a septum at mid-cell. The site is determined by the min operon products MinC, MinD and MinE. MinC is a nonspecific inhibitor of the septum protein FtsZ. MinE is the supressor of MinC. MinD plays a pivotal role, selecting the mid-cell over other sites through the activation and regulation of MinC and MinE. MinD is a membrane-associated ATPase, related to nitrogenase iron protein. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. MinD is a monomer.
Probab=95.02 E-value=0.25 Score=35.39 Aligned_cols=65 Identities=9% Similarity=-0.026 Sum_probs=46.0
Q ss_pred EEEEEeCCCCcccHHHHHHhhhcCCEEEEEEeCCCcccHHHHHHHHHHHHhCCCCCCCcEEEEEeCCCCCC
Q 029517 57 KLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPD 127 (192)
Q Consensus 57 ~~~i~D~~G~~~~~~~~~~~~~~~d~ii~v~D~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~ 127 (192)
.+.|+|+|+.... .....+..+|.+|++++++ ..++..+..+++.+... ....+.++.|+.|...
T Consensus 64 d~viiD~p~~~~~--~~~~~l~~ad~viiv~~~~-~~s~~~~~~~~~~~~~~---~~~~~~iv~N~~~~~~ 128 (179)
T cd02036 64 DYILIDSPAGIER--GFITAIAPADEALLVTTPE-ISSLRDADRVKGLLEAL---GIKVVGVIVNRVRPDM 128 (179)
T ss_pred CEEEEECCCCCcH--HHHHHHHhCCcEEEEeCCC-cchHHHHHHHHHHHHHc---CCceEEEEEeCCcccc
Confidence 7999999986533 2344578899999999886 44566666666655543 2346778999998654
No 375
>COG5192 BMS1 GTP-binding protein required for 40S ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=94.83 E-value=0.34 Score=41.53 Aligned_cols=126 Identities=16% Similarity=0.169 Sum_probs=75.0
Q ss_pred hccccHHHHHHHHhhhhccCCCCCCCCCCCCcceEEEEEEecCEEEEEEeCCCCcccHHHHHHhhhcCCEEEEEEeCCCc
Q 029517 13 FTKTEFHTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACP 92 (192)
Q Consensus 13 ~kst~~~~l~~~~~~~~~~~~~~~~~~~~~T~g~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ii~v~D~~~~ 92 (192)
=|||++++|..|.+.. +-.+...| +..+.++..++.++.+|. +...+. ...+-+|.+++++|....
T Consensus 81 GKsTLirSlVrr~tk~------ti~~i~GP-----iTvvsgK~RRiTflEcp~--Dl~~mi-DvaKIaDLVlLlIdgnfG 146 (1077)
T COG5192 81 GKSTLIRSLVRRFTKQ------TIDEIRGP-----ITVVSGKTRRITFLECPS--DLHQMI-DVAKIADLVLLLIDGNFG 146 (1077)
T ss_pred ChhHHHHHHHHHHHHh------hhhccCCc-----eEEeecceeEEEEEeChH--HHHHHH-hHHHhhheeEEEeccccC
Confidence 3899999999998851 11111222 455777888999999993 333333 345679999999998765
Q ss_pred ccHHHHHHHHHHHHhCCCCCCC-cEEEEEeCCCCCC-CCCHHHHHhHcCcccc--CCcceEEEEeeecC
Q 029517 93 SRFEDSKTALEKVLRNEDLQGA-PLLILANKQDLPD-AVSADELARYLDLKKL--DERVCMFEAVSGYD 157 (192)
Q Consensus 93 ~s~~~~~~~~~~i~~~~~~~~~-piiiv~nK~Dl~~-~~~~~~~~~~~~~~~~--~~~~~~~~~~Sa~~ 157 (192)
-..+. .++++ ++.. .+. .++.|++..|+-. +.....+...++-.-+ -..+..+|..|...
T Consensus 147 fEMET-mEFLn-il~~---HGmPrvlgV~ThlDlfk~~stLr~~KKrlkhRfWtEiyqGaKlFylsgV~ 210 (1077)
T COG5192 147 FEMET-MEFLN-ILIS---HGMPRVLGVVTHLDLFKNPSTLRSIKKRLKHRFWTEIYQGAKLFYLSGVE 210 (1077)
T ss_pred ceehH-HHHHH-HHhh---cCCCceEEEEeecccccChHHHHHHHHHHhhhHHHHHcCCceEEEecccc
Confidence 33333 22333 3333 234 5777999999965 3333344433320000 03367777777654
No 376
>KOG2485 consensus Conserved ATP/GTP binding protein [General function prediction only]
Probab=94.74 E-value=0.058 Score=42.49 Aligned_cols=103 Identities=17% Similarity=0.195 Sum_probs=61.0
Q ss_pred EEeCCCCc-ccHHHHHHhhhcCCEEEEEEeCCCcccHHHHHHHHHHHHhCCCCCCCcEEEEEeCCCCCCCCCHHHHHhHc
Q 029517 60 FWDLGGQP-GLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAVSADELARYL 138 (192)
Q Consensus 60 i~D~~G~~-~~~~~~~~~~~~~d~ii~v~D~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~ 138 (192)
.-+.|||. .--...+.-+...|++|=|-|+.-|-|=+. +.+.++. ...|=|+|.||+||.+......+.+++
T Consensus 26 ~~wfpgHmakalr~i~~~l~~~D~iiEvrDaRiPLssrn--~~~~~~~-----~~k~riiVlNK~DLad~~~~k~~iq~~ 98 (335)
T KOG2485|consen 26 RRWFPGHMAKALRAIQNRLPLVDCIIEVRDARIPLSSRN--ELFQDFL-----PPKPRIIVLNKMDLADPKEQKKIIQYL 98 (335)
T ss_pred cccCchHHHHHHHHHHhhcccccEEEEeeccccCCcccc--HHHHHhc-----CCCceEEEEecccccCchhhhHHHHHH
Confidence 34467765 333345556778999999999987743322 4444443 368899999999999855555666666
Q ss_pred CccccCCcceEEEEeeecC--CCCHHHHHHHHHHHHH
Q 029517 139 DLKKLDERVCMFEAVSGYD--GFGIKESVEWLVEVME 173 (192)
Q Consensus 139 ~~~~~~~~~~~~~~~Sa~~--~~gi~e~~~~i~~~i~ 173 (192)
+- .....++..++.. ..++..++.-+.....
T Consensus 99 ~~----~~~~~~~~~~c~~~~~~~v~~l~~il~~~~~ 131 (335)
T KOG2485|consen 99 EW----QNLESYIKLDCNKDCNKQVSPLLKILTILSE 131 (335)
T ss_pred Hh----hcccchhhhhhhhhhhhccccHHHHHHHHHH
Confidence 51 1222333333333 3335555554444333
No 377
>PRK12288 GTPase RsgA; Reviewed
Probab=94.74 E-value=0.028 Score=45.42 Aligned_cols=55 Identities=11% Similarity=0.008 Sum_probs=35.3
Q ss_pred hccccHHHHHHHHhhhhccCCCCCCCCCCCCcceEEEEEEecCEEEEEEeCCCCcccH
Q 029517 13 FTKTEFHTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPGLR 70 (192)
Q Consensus 13 ~kst~~~~l~~~~~~~~~~~~~~~~~~~~~T~g~~~~~~~~~~~~~~i~D~~G~~~~~ 70 (192)
=|||++|+|+++....+..++.....---.|....+..+..+. .++||||...+.
T Consensus 217 GKSTLiN~Ll~~~~~~t~~is~~~~rGrHTT~~~~l~~l~~~~---~liDTPGir~~~ 271 (347)
T PRK12288 217 GKSSLINALLPEAEILVGDVSDNSGLGQHTTTAARLYHFPHGG---DLIDSPGVREFG 271 (347)
T ss_pred CHHHHHHHhccccceeeccccCcCCCCcCceeeEEEEEecCCC---EEEECCCCCccc
Confidence 3899999999887776666655433222234455555554333 599999986553
No 378
>cd03111 CpaE_like This protein family consists of proteins similar to the cpaE protein of the Caulobacter pilus assembly and the orf4 protein of Actinobacillus pilus formation gene cluster. The function of these proteins are unkown. The Caulobacter pilus assembly contains 7 genes: pilA, cpaA, cpaB, cpaC, cpaD, cpaE and cpaF. These genes are clustered together on chromosome.
Probab=94.70 E-value=0.26 Score=32.54 Aligned_cols=63 Identities=19% Similarity=0.168 Sum_probs=44.6
Q ss_pred EEEEEeCCCCcccHHHHHHhhhcCCEEEEEEeCCCcccHHHHHHHHHHHHhCCCCCCCcEEEEEeC
Q 029517 57 KLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANK 122 (192)
Q Consensus 57 ~~~i~D~~G~~~~~~~~~~~~~~~d~ii~v~D~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK 122 (192)
.+.+.|+|+.... .....+..+|.++++++++ ..++..+..+++.+.+........+.+|+|+
T Consensus 44 D~IIiDtpp~~~~--~~~~~l~~aD~vlvvv~~~-~~s~~~~~~~~~~l~~~~~~~~~~~~lVvNr 106 (106)
T cd03111 44 DYVVVDLGRSLDE--VSLAALDQADRVFLVTQQD-LPSIRNAKRLLELLRVLDYSLPAKIELVLNR 106 (106)
T ss_pred CEEEEeCCCCcCH--HHHHHHHHcCeEEEEecCC-hHHHHHHHHHHHHHHHcCCCCcCceEEEecC
Confidence 7899999997543 2345678899999999876 5567777777777665432113467777775
No 379
>PRK14974 cell division protein FtsY; Provisional
Probab=94.70 E-value=0.32 Score=39.13 Aligned_cols=96 Identities=14% Similarity=0.023 Sum_probs=54.2
Q ss_pred CEEEEEEeCCCCcccHH----HHHHhh--hcCCEEEEEEeCCCcccHHHHHHHHHHHHhCCCCCCCcEEEEEeCCCCCCC
Q 029517 55 NSKLVFWDLGGQPGLRS----IWEKYY--EEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDA 128 (192)
Q Consensus 55 ~~~~~i~D~~G~~~~~~----~~~~~~--~~~d~ii~v~D~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~~ 128 (192)
+..+.++||+|...... ...... .+.|.+++|+|++....- ......+... . .+--+++||.|....
T Consensus 222 ~~DvVLIDTaGr~~~~~~lm~eL~~i~~~~~pd~~iLVl~a~~g~d~---~~~a~~f~~~---~-~~~giIlTKlD~~~~ 294 (336)
T PRK14974 222 GIDVVLIDTAGRMHTDANLMDELKKIVRVTKPDLVIFVGDALAGNDA---VEQAREFNEA---V-GIDGVILTKVDADAK 294 (336)
T ss_pred CCCEEEEECCCccCCcHHHHHHHHHHHHhhCCceEEEeeccccchhH---HHHHHHHHhc---C-CCCEEEEeeecCCCC
Confidence 46799999999753221 222222 257889999999754321 1222222221 1 235578999998653
Q ss_pred CCHHHHHhHcCccccCCcceEEEEeeecCCCCHHHHHH
Q 029517 129 VSADELARYLDLKKLDERVCMFEAVSGYDGFGIKESVE 166 (192)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~e~~~ 166 (192)
.. .+..... ..+.|+..++ +|++++++..
T Consensus 295 ~G--~~ls~~~-----~~~~Pi~~i~--~Gq~v~Dl~~ 323 (336)
T PRK14974 295 GG--AALSIAY-----VIGKPILFLG--VGQGYDDLIP 323 (336)
T ss_pred cc--HHHHHHH-----HHCcCEEEEe--CCCChhhccc
Confidence 22 2222222 2245666665 7999987743
No 380
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=94.67 E-value=0.018 Score=40.10 Aligned_cols=44 Identities=20% Similarity=0.178 Sum_probs=23.9
Q ss_pred hccccHHHHHHHHhhhhccCCCCCCCCCCCCcceEEEEEEecCEEEEEEeCCCC
Q 029517 13 FTKTEFHTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQ 66 (192)
Q Consensus 13 ~kst~~~~l~~~~~~~~~~~~~~~~~~~~~T~g~~~~~~~~~~~~~~i~D~~G~ 66 (192)
=|||++|+|+++.....+..++ .|... ..+.... .+.+|||||.
T Consensus 95 GKstlin~l~~~~~~~~~~~~~-------~~~~~--~~~~~~~-~~~i~DtpG~ 138 (141)
T cd01857 95 GKSSLINALVGKKKVSVSATPG-------KTKHF--QTIFLTP-TITLCDCPGL 138 (141)
T ss_pred CHHHHHHHHhCCCceeeCCCCC-------cccce--EEEEeCC-CEEEEECCCc
Confidence 3788889888654332222222 12222 2222222 6899999995
No 381
>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]
Probab=94.63 E-value=0.085 Score=39.99 Aligned_cols=64 Identities=16% Similarity=0.235 Sum_probs=39.6
Q ss_pred CEEEEEEeCCC-CcccHHHHHHhhhcCCEEEEEEeCCCcccHHHHHHHHHHHHhCCCCCC-CcEEEEEeCCCCC
Q 029517 55 NSKLVFWDLGG-QPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQG-APLLILANKQDLP 126 (192)
Q Consensus 55 ~~~~~i~D~~G-~~~~~~~~~~~~~~~d~ii~v~D~~~~~s~~~~~~~~~~i~~~~~~~~-~piiiv~nK~Dl~ 126 (192)
...+.+.||-- -+.|. ....+++|.+|.|+|++- .++..+.... ++.+. .+ .++.+|+||.|-.
T Consensus 133 ~~e~VivDtEAGiEHfg---Rg~~~~vD~vivVvDpS~-~sl~taeri~-~L~~e---lg~k~i~~V~NKv~e~ 198 (255)
T COG3640 133 RYEVVIVDTEAGIEHFG---RGTIEGVDLVIVVVDPSY-KSLRTAERIK-ELAEE---LGIKRIFVVLNKVDEE 198 (255)
T ss_pred cCcEEEEecccchhhhc---cccccCCCEEEEEeCCcH-HHHHHHHHHH-HHHHH---hCCceEEEEEeeccch
Confidence 34567777743 34333 234578999999999973 3344333322 22222 24 7999999999854
No 382
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=94.60 E-value=0.014 Score=41.44 Aligned_cols=42 Identities=17% Similarity=0.118 Sum_probs=25.6
Q ss_pred ccccHHHHHHHHhhhhccCCCCCCCCCCCCcceEEEEEEecCEEEEEEeCCC
Q 029517 14 TKTEFHTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGG 65 (192)
Q Consensus 14 kst~~~~l~~~~~~~~~~~~~~~~~~~~~T~g~~~~~~~~~~~~~~i~D~~G 65 (192)
|||++|+|+++.....+.+++. |....+... .-.+.++||||
T Consensus 115 KStliN~l~~~~~~~~~~~~g~-------T~~~~~~~~---~~~~~liDtPG 156 (157)
T cd01858 115 KSSIINTLRSKKVCKVAPIPGE-------TKVWQYITL---MKRIYLIDCPG 156 (157)
T ss_pred hHHHHHHHhcCCceeeCCCCCe-------eEeEEEEEc---CCCEEEEECcC
Confidence 8999999987665544444432 222222222 22478999999
No 383
>TIGR00157 ribosome small subunit-dependent GTPase A. The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).
Probab=94.47 E-value=0.057 Score=41.41 Aligned_cols=53 Identities=9% Similarity=-0.028 Sum_probs=34.0
Q ss_pred hccccHHHHHHHHhhhhccCCCCCCCCCCCCcceEEEEEEecCEEEEEEeCCCCccc
Q 029517 13 FTKTEFHTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPGL 69 (192)
Q Consensus 13 ~kst~~~~l~~~~~~~~~~~~~~~~~~~~~T~g~~~~~~~~~~~~~~i~D~~G~~~~ 69 (192)
=|||++|+|+++....+.+++.......-+|.......+. + ..++||||...+
T Consensus 132 GKStLiN~L~~~~~~~t~~i~~~~~~G~hTT~~~~l~~l~-~---~~liDtPG~~~~ 184 (245)
T TIGR00157 132 GKSSLINALDPSVKQQVNDISSKLGLGKHTTTHVELFHFH-G---GLIADTPGFNEF 184 (245)
T ss_pred CHHHHHHHHhhhhhccccceeccCCCCCCcCCceEEEEcC-C---cEEEeCCCcccc
Confidence 4899999999887776666654333222344455555552 2 379999996543
No 384
>cd01851 GBP Guanylate-binding protein (GBP), N-terminal domain. Guanylate-binding proteins (GBPs) define a group of proteins that are synthesized after activation of the cell by interferons. The biochemical properties of GBPs are clearly different from those of Ras-like and heterotrimeric GTP-binding proteins. They bind guanine nucleotides with low affinity (micromolar range), are stable in their absence and have a high turnover GTPase. In addition to binding GDP/GTP, they have the unique ability to bind GMP with equal affinity and hydrolyze GTP not only to GDP, but also to GMP. Furthermore, two unique regions around the base and the phosphate-binding areas, the guanine and the phosphate caps, respectively, give the nucleotide-binding site a unique appearance not found in the canonical GTP-binding proteins. The phosphate cap, which constitutes the region analogous to switch I, completely shields the phosphate-binding site from solvent such that a potential GTPase-activating protein
Probab=94.32 E-value=0.16 Score=38.42 Aligned_cols=75 Identities=11% Similarity=0.113 Sum_probs=44.2
Q ss_pred ccccHHHHHHHHhhhhccCCCCCCCCCCCCcceEEEEEEe---cCEEEEEEeCCCCccc------HHHHHHhhhc--CCE
Q 029517 14 TKTEFHTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEV---SNSKLVFWDLGGQPGL------RSIWEKYYEE--AHA 82 (192)
Q Consensus 14 kst~~~~l~~~~~~~~~~~~~~~~~~~~~T~g~~~~~~~~---~~~~~~i~D~~G~~~~------~~~~~~~~~~--~d~ 82 (192)
||+++|.|++.... +. + -......|.|+-...... .+..+.++||+|.... .......+.. +++
T Consensus 20 KS~llN~l~~~~~~-f~-~---~~~~~~~T~gi~~~~~~~~~~~~~~v~~lDteG~~~~~~~~~~~~~~~~~l~~llss~ 94 (224)
T cd01851 20 KSFLLNHLFGTLSG-FD-V---MDTSQQTTKGIWMWSVPFKLGKEHAVLLLDTEGTDGRERGEFEDDARLFALATLLSSV 94 (224)
T ss_pred HHHHHHHHhCCCCC-eE-e---cCCCCCCccceEEEeccccCCCcceEEEEecCCcCccccCchhhhhHHHHHHHHHhCE
Confidence 78888888776311 00 0 011235667776554333 3578999999996432 1222333444 899
Q ss_pred EEEEEeCCCcc
Q 029517 83 VVFVIDAACPS 93 (192)
Q Consensus 83 ii~v~D~~~~~ 93 (192)
+|+..+.....
T Consensus 95 ~i~n~~~~~~~ 105 (224)
T cd01851 95 LIYNSWETILG 105 (224)
T ss_pred EEEeccCcccH
Confidence 99999876543
No 385
>COG4963 CpaE Flp pilus assembly protein, ATPase CpaE [Intracellular trafficking and secretion]
Probab=94.21 E-value=0.39 Score=38.85 Aligned_cols=83 Identities=14% Similarity=0.250 Sum_probs=63.3
Q ss_pred cCEEEEEEeCCCCcccHHHHHHhhhcCCEEEEEEeCCCcccHHHHHHHHHHHHhCCCCCCCcEEEEEeCCCCCCCCCHHH
Q 029517 54 SNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAVSADE 133 (192)
Q Consensus 54 ~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ii~v~D~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~~~~~~~ 133 (192)
..+.+.++|.| + ....-...++..+|.+++|++.+ -.++...++.+..+.+... .+.+..+++||.+.....+.++
T Consensus 216 ~~~~~vV~Dlp-~-~~~~~t~~vL~~Sd~iviv~e~s-l~slR~ak~lld~l~~~r~-~~~~p~lv~n~~~~~~~~~~~d 291 (366)
T COG4963 216 GSFDFVVVDLP-N-IWTDWTRQVLSGSDEIVIVAEPS-LASLRNAKELLDELKRLRP-NDPKPILVLNRVGVPKRPEPSD 291 (366)
T ss_pred ccCCeEEEcCC-C-ccchHHHHHHhcCCeEEEEeccc-HHHHHHHHHHHHHHHHhCC-CCCCceEEeeecCCCCCCCHHH
Confidence 35689999999 3 23445567889999999999986 4567888888888877654 4677888999998877666677
Q ss_pred HHhHcCc
Q 029517 134 LARYLDL 140 (192)
Q Consensus 134 ~~~~~~~ 140 (192)
+.+.+++
T Consensus 292 l~~~~~i 298 (366)
T COG4963 292 LEEILGI 298 (366)
T ss_pred HHHHhCC
Confidence 7777764
No 386
>TIGR03348 VI_IcmF type VI secretion protein IcmF. Members of this protein family are IcmF homologs and tend to be associated with type VI secretion systems.
Probab=94.08 E-value=0.43 Score=44.83 Aligned_cols=70 Identities=17% Similarity=0.222 Sum_probs=45.1
Q ss_pred EEEEEeCCCCc--------ccHHHHHHhhh---------cCCEEEEEEeCCCcc--cH-------HHHHHHHHHHHhCCC
Q 029517 57 KLVFWDLGGQP--------GLRSIWEKYYE---------EAHAVVFVIDAACPS--RF-------EDSKTALEKVLRNED 110 (192)
Q Consensus 57 ~~~i~D~~G~~--------~~~~~~~~~~~---------~~d~ii~v~D~~~~~--s~-------~~~~~~~~~i~~~~~ 110 (192)
+..++||+|.. .....|..+++ ..+|+|+++|+.+.- +- ..++..+.++.+...
T Consensus 162 ~avliDtaG~y~~~~~~~~~~~~~W~~fL~~L~k~R~r~plnGvil~vs~~~Ll~~~~~~~~~~a~~lR~rl~el~~~lg 241 (1169)
T TIGR03348 162 EAVLIDTAGRYTTQDSDPEEDAAAWLGFLGLLRKHRRRQPLNGVVVTVSLADLLTADPAERKAHARAIRQRLQELREQLG 241 (1169)
T ss_pred CEEEEcCCCccccCCCcccccHHHHHHHHHHHHHhCCCCCCCeEEEEEEHHHHhCCCHHHHHHHHHHHHHHHHHHHHHhC
Confidence 45699999932 23445655542 479999999986431 11 234444455544322
Q ss_pred CCCCcEEEEEeCCCCCC
Q 029517 111 LQGAPLLILANKQDLPD 127 (192)
Q Consensus 111 ~~~~piiiv~nK~Dl~~ 127 (192)
...|+.++.||+|+..
T Consensus 242 -~~~PVYvv~Tk~Dll~ 257 (1169)
T TIGR03348 242 -ARFPVYLVLTKADLLA 257 (1169)
T ss_pred -CCCCEEEEEecchhhc
Confidence 4789999999999874
No 387
>KOG3859 consensus Septins (P-loop GTPases) [Cell cycle control, cell division, chromosome partitioning]
Probab=93.83 E-value=0.11 Score=40.39 Aligned_cols=103 Identities=20% Similarity=0.254 Sum_probs=60.5
Q ss_pred hccccHHHHHHHHhhhhccCCCCCCCCCCCCcceEEEEEEe--c--CEEEEEEeCCCC-------cccHH-------HHH
Q 029517 13 FTKTEFHTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEV--S--NSKLVFWDLGGQ-------PGLRS-------IWE 74 (192)
Q Consensus 13 ~kst~~~~l~~~~~~~~~~~~~~~~~~~~~T~g~~~~~~~~--~--~~~~~i~D~~G~-------~~~~~-------~~~ 74 (192)
=|||+++||+|..-. ..+.....|+++..-.+++. . .+++.|+||.|- +.|.. ..+
T Consensus 54 GKsTLmdtLFNt~f~------~~p~~H~~~~V~L~~~TyelqEsnvrlKLtiv~tvGfGDQinK~~Syk~iVdyidaQFE 127 (406)
T KOG3859|consen 54 GKSTLMDTLFNTKFE------SEPSTHTLPNVKLQANTYELQESNVRLKLTIVDTVGFGDQINKEDSYKPIVDYIDAQFE 127 (406)
T ss_pred cHHHHHHHHhccccC------CCCCccCCCCceeecchhhhhhcCeeEEEEEEeecccccccCcccccchHHHHHHHHHH
Confidence 478999999887655 55666667777766554432 2 467999999991 12221 122
Q ss_pred Hhh---------------hcCCEEEEEEeCCCcccHHHHHHHHHHHHhCCCCCCCcEEEEEeCCCCC
Q 029517 75 KYY---------------EEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLP 126 (192)
Q Consensus 75 ~~~---------------~~~d~ii~v~D~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~ 126 (192)
.|+ ....+.++.+.++ ..++..+...-.+-+. ....||-++-|+|-.
T Consensus 128 aYLQEELKi~Rsl~~~hDsRiH~CLYFI~PT-GH~LKslDLvtmk~Ld----skVNIIPvIAKaDti 189 (406)
T KOG3859|consen 128 AYLQEELKIRRSLFTYHDSRIHVCLYFISPT-GHSLKSLDLVTMKKLD----SKVNIIPVIAKADTI 189 (406)
T ss_pred HHHHHHHHHHHHHHHhccCceEEEEEEecCC-CcchhHHHHHHHHHHh----hhhhhHHHHHHhhhh
Confidence 222 1356778888877 4456554443222111 235566667788853
No 388
>KOG0448 consensus Mitofusin 1 GTPase, involved in mitochondrila biogenesis [Posttranslational modification, protein turnover, chaperones]
Probab=93.45 E-value=0.44 Score=41.48 Aligned_cols=66 Identities=24% Similarity=0.340 Sum_probs=42.7
Q ss_pred EEEEEeCCCCc---ccHHHHHHhhhcCCEEEEEEeCCCcccHHHHHHHHHHHHhCCCCCCCcEEEEEeCCCCCC
Q 029517 57 KLVFWDLGGQP---GLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPD 127 (192)
Q Consensus 57 ~~~i~D~~G~~---~~~~~~~~~~~~~d~ii~v~D~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~ 127 (192)
.+.+.|.||.+ ....-...++..+|++|+|..+.+.-+..+- .++....+ .+..+.++-||.|...
T Consensus 207 DivliDsPGld~~se~tswid~~cldaDVfVlV~NaEntlt~sek-~Ff~~vs~----~KpniFIlnnkwDasa 275 (749)
T KOG0448|consen 207 DIVLIDSPGLDVDSELTSWIDSFCLDADVFVLVVNAENTLTLSEK-QFFHKVSE----EKPNIFILNNKWDASA 275 (749)
T ss_pred cceeccCCCCCCchhhhHHHHHHhhcCCeEEEEecCccHhHHHHH-HHHHHhhc----cCCcEEEEechhhhhc
Confidence 47889999954 3344557778899999999998765444332 22222211 2345666778889865
No 389
>COG1161 Predicted GTPases [General function prediction only]
Probab=93.44 E-value=0.047 Score=43.66 Aligned_cols=46 Identities=22% Similarity=0.224 Sum_probs=30.2
Q ss_pred hhhccccHHHHHHHHhhhhccCCCCCCCCCCCCcceEEEEEEecCEEEEEEeCCCC
Q 029517 11 YIFTKTEFHTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQ 66 (192)
Q Consensus 11 ~~~kst~~~~l~~~~~~~~~~~~~~~~~~~~~T~g~~~~~~~~~~~~~~i~D~~G~ 66 (192)
++=|||++|+|+++....++..|+.+ .+..+..+. -.+.++||||-
T Consensus 142 NVGKSslIN~L~~k~~~~~s~~PG~T-------k~~q~i~~~---~~i~LlDtPGi 187 (322)
T COG1161 142 NVGKSTLINRLLGKKVAKTSNRPGTT-------KGIQWIKLD---DGIYLLDTPGI 187 (322)
T ss_pred CCcHHHHHHHHhcccceeeCCCCcee-------cceEEEEcC---CCeEEecCCCc
Confidence 34589999999988886665555433 333333332 24899999993
No 390
>cd01855 YqeH YqeH. YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.
Probab=93.40 E-value=0.099 Score=38.23 Aligned_cols=49 Identities=18% Similarity=0.051 Sum_probs=24.1
Q ss_pred ccccHHHHHHHHhhhhccCCC-CCCCCCCCCcceEEEEEEecCEEEEEEeCCC
Q 029517 14 TKTEFHTLLEKLKSVYSNVEG-LPPDRIVPTVGLNIGRIEVSNSKLVFWDLGG 65 (192)
Q Consensus 14 kst~~~~l~~~~~~~~~~~~~-~~~~~~~~T~g~~~~~~~~~~~~~~i~D~~G 65 (192)
|||++|+|++.......+... ........|.+.....+ .. .+.++||||
T Consensus 140 KStliN~l~~~~~~~~~~~~~~~~~~~~gtT~~~~~~~~--~~-~~~~~DtPG 189 (190)
T cd01855 140 KSTLINALLKKDNGKKKLKDLLTTSPIPGTTLDLIKIPL--GN-GKKLYDTPG 189 (190)
T ss_pred HHHHHHHHHHhcccccccccccccCCCCCeeeeeEEEec--CC-CCEEEeCcC
Confidence 899999999765431100000 00111122333322222 22 579999999
No 391
>PHA02518 ParA-like protein; Provisional
Probab=93.33 E-value=0.46 Score=35.07 Aligned_cols=68 Identities=12% Similarity=0.060 Sum_probs=42.9
Q ss_pred cCEEEEEEeCCCCcccHHHHHHhhhcCCEEEEEEeCCCcccHHHHHH---HHHHHHhCCCCCCCc-EEEEEeCCCCC
Q 029517 54 SNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKT---ALEKVLRNEDLQGAP-LLILANKQDLP 126 (192)
Q Consensus 54 ~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ii~v~D~~~~~s~~~~~~---~~~~i~~~~~~~~~p-iiiv~nK~Dl~ 126 (192)
..+.+.|+|+||.. .......+..+|.+|+++.++. .++..+.. ++..+.... ...| ..++.|+.+..
T Consensus 75 ~~~d~viiD~p~~~--~~~~~~~l~~aD~viip~~ps~-~~~~~~~~~~~~~~~~~~~~--~~~~~~~iv~n~~~~~ 146 (211)
T PHA02518 75 SGYDYVVVDGAPQD--SELARAALRIADMVLIPVQPSP-FDIWAAPDLVELIKARQEVT--DGLPKFAFIISRAIKN 146 (211)
T ss_pred ccCCEEEEeCCCCc--cHHHHHHHHHCCEEEEEeCCCh-hhHHHHHHHHHHHHHHHhhC--CCCceEEEEEeccCCc
Confidence 35789999999974 3455667889999999998863 33443333 333332221 2344 45677877643
No 392
>PF09547 Spore_IV_A: Stage IV sporulation protein A (spore_IV_A); InterPro: IPR014201 This entry is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis []. A comparative genome analysis of all sequenced genomes of Firmicutes shows that the proteins are strictly conserved among the sub-set of endospore-forming species.
Probab=93.32 E-value=1.2 Score=36.99 Aligned_cols=40 Identities=25% Similarity=0.277 Sum_probs=24.4
Q ss_pred CCcEEEEEeCCCCCCCCCHHHHHhHcCccccCCcceEEEEeeecC
Q 029517 113 GAPLLILANKQDLPDAVSADELARYLDLKKLDERVCMFEAVSGYD 157 (192)
Q Consensus 113 ~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 157 (192)
++|+++++|-.+--. ....++.+.+. ...+.+++++++..
T Consensus 180 gKPFvillNs~~P~s-~et~~L~~eL~----ekY~vpVlpvnc~~ 219 (492)
T PF09547_consen 180 GKPFVILLNSTKPYS-EETQELAEELE----EKYDVPVLPVNCEQ 219 (492)
T ss_pred CCCEEEEEeCCCCCC-HHHHHHHHHHH----HHhCCcEEEeehHH
Confidence 799999999887432 22233333333 24567777777644
No 393
>PF14331 ImcF-related_N: ImcF-related N-terminal domain
Probab=93.31 E-value=0.4 Score=37.26 Aligned_cols=89 Identities=20% Similarity=0.251 Sum_probs=49.3
Q ss_pred cCCEEEEEEeCCC-----cc--cHH----HHHHHHHHHHhCCCCCCCcEEEEEeCCCCCC-------CCCHHHHHhHcCc
Q 029517 79 EAHAVVFVIDAAC-----PS--RFE----DSKTALEKVLRNEDLQGAPLLILANKQDLPD-------AVSADELARYLDL 140 (192)
Q Consensus 79 ~~d~ii~v~D~~~-----~~--s~~----~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~-------~~~~~~~~~~~~~ 140 (192)
..+|+|+++|+.+ .. .+. .++.-+..+.+... ...|+.+++||+|+.. ..+.++..+.+
T Consensus 25 PlnGvil~vs~~~Ll~~~~~~r~l~~~a~~lR~rL~el~~~lg-~~~PVYvv~Tk~D~l~GF~ef~~~L~~~~r~q~l-- 101 (266)
T PF14331_consen 25 PLNGVILTVSVDDLLNADEAERELEALARALRQRLEELQRTLG-VRLPVYVVFTKCDLLPGFDEFFSDLSEEEREQVL-- 101 (266)
T ss_pred CCCEEEEEEEHHHHhcCChhhhHHHHHHHHHHHHHHHHHHHhC-CCCCeEeeeECCCcccCHHHHHHhCCHHHHhCCc--
Confidence 3699999998742 11 122 12233333333221 4789999999999875 23333333333
Q ss_pred cccCCcceEEEEeeecCCCC---HHHHHHHHHHHHHhcc
Q 029517 141 KKLDERVCMFEAVSGYDGFG---IKESVEWLVEVMERSK 176 (192)
Q Consensus 141 ~~~~~~~~~~~~~Sa~~~~g---i~e~~~~i~~~i~~~~ 176 (192)
|+.+-.-....+.. +++.|+.+.+.+....
T Consensus 102 ------G~t~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~ 134 (266)
T PF14331_consen 102 ------GFTFPYDEDADGDAWAWFDEEFDELVARLNARV 134 (266)
T ss_pred ------ccccCCccccccchHHHHHHHHHHHHHHHHHHH
Confidence 33333333334444 7777888777666543
No 394
>cd01859 MJ1464 MJ1464. This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.
Probab=93.22 E-value=0.042 Score=38.78 Aligned_cols=41 Identities=20% Similarity=0.303 Sum_probs=22.2
Q ss_pred ccccHHHHHHHHhhhhccCCCCCCCCCCCCcceEEE-EEEecCEEEEEEeCCC
Q 029517 14 TKTEFHTLLEKLKSVYSNVEGLPPDRIVPTVGLNIG-RIEVSNSKLVFWDLGG 65 (192)
Q Consensus 14 kst~~~~l~~~~~~~~~~~~~~~~~~~~~T~g~~~~-~~~~~~~~~~i~D~~G 65 (192)
|||++|+|.++. ...+.|+.|.... .+...+..+.+|||||
T Consensus 114 kssl~~~l~~~~-----------~~~~~~~~~~t~~~~~~~~~~~~~~~DtpG 155 (156)
T cd01859 114 KSSIINALKGRH-----------SASTSPSPGYTKGEQLVKITSKIYLLDTPG 155 (156)
T ss_pred HHHHHHHHhCCC-----------ccccCCCCCeeeeeEEEEcCCCEEEEECcC
Confidence 666666665322 2233455554332 1111233799999999
No 395
>PRK12289 GTPase RsgA; Reviewed
Probab=93.02 E-value=0.086 Score=42.67 Aligned_cols=53 Identities=11% Similarity=0.003 Sum_probs=31.6
Q ss_pred hccccHHHHHHHHhhhhccCCCCCCCCCCCCcceEEEEEEecCEEEEEEeCCCCcc
Q 029517 13 FTKTEFHTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPG 68 (192)
Q Consensus 13 ~kst~~~~l~~~~~~~~~~~~~~~~~~~~~T~g~~~~~~~~~~~~~~i~D~~G~~~ 68 (192)
=|||++|+|++.....+..+++....---.|.......+..+ ..++||||...
T Consensus 184 GKSSLIN~L~~~~~~~t~~vs~~~~rGrHTT~~~~l~~l~~g---~~liDTPG~~~ 236 (352)
T PRK12289 184 GKSSLINRLIPDVELRVGKVSGKLGRGRHTTRHVELFELPNG---GLLADTPGFNQ 236 (352)
T ss_pred CHHHHHHHHcCccccccccccCCCCCCCCcCceeEEEECCCC---cEEEeCCCccc
Confidence 389999999987766666665543222112333333344322 27999999654
No 396
>cd03114 ArgK-like The function of this protein family is unkown. The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems.
Probab=93.02 E-value=0.28 Score=34.56 Aligned_cols=58 Identities=14% Similarity=0.156 Sum_probs=39.1
Q ss_pred CEEEEEEeCCCCcccHHHHHHhhhcCCEEEEEEeCCCcccHHHHHHHHHHHHhCCCCCCCcEEEEEeCCC
Q 029517 55 NSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQD 124 (192)
Q Consensus 55 ~~~~~i~D~~G~~~~~~~~~~~~~~~d~ii~v~D~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~D 124 (192)
++.+.|+||+|.... ...++..+|-+++|..++-.+.+.-++.. +. ..-=++++||+|
T Consensus 91 ~~D~iiIDtaG~~~~---~~~~~~~Ad~~ivv~tpe~~D~y~~~k~~---~~------~~~~~~~~~k~~ 148 (148)
T cd03114 91 GFDVIIVETVGVGQS---EVDIASMADTTVVVMAPGAGDDIQAIKAG---IM------EIADIVVVNKAD 148 (148)
T ss_pred CCCEEEEECCccChh---hhhHHHhCCEEEEEECCCchhHHHHhhhh---Hh------hhcCEEEEeCCC
Confidence 578999999996522 23478899999999988744444443332 11 223468899997
No 397
>COG1149 MinD superfamily P-loop ATPase containing an inserted ferredoxin domain [Energy production and conversion]
Probab=92.89 E-value=0.78 Score=35.61 Aligned_cols=73 Identities=27% Similarity=0.373 Sum_probs=48.5
Q ss_pred EEEEEEeCCCCcccHHHHHHhhhcCCEEEEEEeCCCcccHHHHHHHHHHHHhCCCCCCCcEEEEEeCCCCCCCCCHHHHH
Q 029517 56 SKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAVSADELA 135 (192)
Q Consensus 56 ~~~~i~D~~G~~~~~~~~~~~~~~~d~ii~v~D~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~~~~~~~~~ 135 (192)
..+.|+|+|..-. -..-..+.++|.+|+|-.+| +..+..++..++-... .++|..+|+||.++... ++.
T Consensus 164 ~~~~IIDsaaG~g--CpVi~sl~~aD~ai~VTEPT-p~glhD~kr~~el~~~----f~ip~~iViNr~~~g~s----~ie 232 (284)
T COG1149 164 ADLLIIDSAAGTG--CPVIASLKGADLAILVTEPT-PFGLHDLKRALELVEH----FGIPTGIVINRYNLGDS----EIE 232 (284)
T ss_pred cceeEEecCCCCC--ChHHHhhccCCEEEEEecCC-ccchhHHHHHHHHHHH----hCCceEEEEecCCCCch----HHH
Confidence 4788888887532 12334678999999999998 4445555444443332 37999999999965432 555
Q ss_pred hHcC
Q 029517 136 RYLD 139 (192)
Q Consensus 136 ~~~~ 139 (192)
+++.
T Consensus 233 ~~~~ 236 (284)
T COG1149 233 EYCE 236 (284)
T ss_pred HHHH
Confidence 5555
No 398
>PRK09563 rbgA GTPase YlqF; Reviewed
Probab=92.69 E-value=0.048 Score=42.83 Aligned_cols=44 Identities=23% Similarity=0.150 Sum_probs=25.4
Q ss_pred ccccHHHHHHHHhhhhccCCCCCCCCCCCCcceEEEEEEecCEEEEEEeCCCCc
Q 029517 14 TKTEFHTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQP 67 (192)
Q Consensus 14 kst~~~~l~~~~~~~~~~~~~~~~~~~~~T~g~~~~~~~~~~~~~~i~D~~G~~ 67 (192)
|||++|+|.++....++..++ .|.+... +.. +-.+.++||||..
T Consensus 134 KSsliN~l~~~~~~~~~~~~g-------~T~~~~~--~~~-~~~~~l~DtPGi~ 177 (287)
T PRK09563 134 KSTLINRLAGKKIAKTGNRPG-------VTKAQQW--IKL-GKGLELLDTPGIL 177 (287)
T ss_pred HHHHHHHHhcCCccccCCCCC-------eEEEEEE--EEe-CCcEEEEECCCcC
Confidence 788888888765443333322 2333322 222 2368899999953
No 399
>PF11111 CENP-M: Centromere protein M (CENP-M); InterPro: IPR020987 The prime candidate for specifying centromere identity is the array of nucleosomes assembles associated with CENP-A []. CENP-A recruits a nucleosome associated complex (CENP-A-NAC complex) comprised of CENP-M which this entry represents, along with two other proteins []. Assembly of the CENP-A NAC at centromeres is partly dependent on CENP-M. The CENP-A NAC is essential, as disruption of the complex causes errors of chromosome alignment and segregation that preclude cell survival [].
Probab=92.61 E-value=1.2 Score=32.20 Aligned_cols=89 Identities=13% Similarity=0.108 Sum_probs=66.6
Q ss_pred cCCEEEEEEeCCCcccHHHHHHHHHHHHhCCCCCCCcEEEEEeCCCCCC--CCCHHHHHhHcCccccCCcceEEEEeeec
Q 029517 79 EAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPD--AVSADELARYLDLKKLDERVCMFEAVSGY 156 (192)
Q Consensus 79 ~~d~ii~v~D~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 156 (192)
..|.|+|++|.....+++.+..-+..+....- --.++++.+-+...+ .+..+++.+++. .+..+++.+.-.
T Consensus 64 rIDlIVFvinl~sk~SL~~ve~SL~~vd~~ff--lGKVCfl~t~a~~~~~~sv~~~~V~kla~-----~y~~plL~~~le 136 (176)
T PF11111_consen 64 RIDLIVFVINLHSKYSLQSVEASLSHVDPSFF--LGKVCFLATNAGRESHCSVHPNEVRKLAA-----TYNSPLLFADLE 136 (176)
T ss_pred eeEEEEEEEecCCcccHHHHHHHHhhCChhhh--ccceEEEEcCCCcccccccCHHHHHHHHH-----HhCCCEEEeecc
Confidence 47999999999999999998887777654321 234555555554433 678888988887 778888888888
Q ss_pred CCCCHHHHHHHHHHHHHh
Q 029517 157 DGFGIKESVEWLVEVMER 174 (192)
Q Consensus 157 ~~~gi~e~~~~i~~~i~~ 174 (192)
+.++...+=+.|.+.++-
T Consensus 137 ~~~~~~~lAqRLL~~lqi 154 (176)
T PF11111_consen 137 NEEGRTSLAQRLLRMLQI 154 (176)
T ss_pred cchHHHHHHHHHHHHHHH
Confidence 888888888888776653
No 400
>COG1162 Predicted GTPases [General function prediction only]
Probab=92.57 E-value=0.13 Score=40.48 Aligned_cols=54 Identities=15% Similarity=0.065 Sum_probs=34.4
Q ss_pred ccccHHHHHHHHhhhhccCCCCCCCCCCCCcceEEEEEEecCEEEEEEeCCCCcccH
Q 029517 14 TKTEFHTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPGLR 70 (192)
Q Consensus 14 kst~~~~l~~~~~~~~~~~~~~~~~~~~~T~g~~~~~~~~~~~~~~i~D~~G~~~~~ 70 (192)
|||++|+|.......+.++...-.----.|.......+..++ .|.||||...+.
T Consensus 177 KSSLiN~L~p~~~~~t~eIS~~~~rGkHTTt~~~l~~l~~gG---~iiDTPGf~~~~ 230 (301)
T COG1162 177 KSTLINALLPELNQKTGEISEKLGRGRHTTTHVELFPLPGGG---WIIDTPGFRSLG 230 (301)
T ss_pred HHHHHHhhCchhhhhhhhhcccCCCCCCccceEEEEEcCCCC---EEEeCCCCCccC
Confidence 899999999877776666665542222233344444554334 789999976553
No 401
>cd01849 YlqF_related_GTPase YlqF-related GTPases. These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.
Probab=92.57 E-value=0.093 Score=37.07 Aligned_cols=42 Identities=29% Similarity=0.382 Sum_probs=23.2
Q ss_pred ccccHHHHHHHHhhhhccCCCCCCCCCCCCcceEEEEEEecCEEEEEEeCCC
Q 029517 14 TKTEFHTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGG 65 (192)
Q Consensus 14 kst~~~~l~~~~~~~~~~~~~~~~~~~~~T~g~~~~~~~~~~~~~~i~D~~G 65 (192)
|||++|+|++......+..++. |.......+ ...+.++||||
T Consensus 113 Kstlin~l~~~~~~~~~~~~~~-------t~~~~~~~~---~~~~~liDtPG 154 (155)
T cd01849 113 KSSVINALLNKLKLKVGNVPGT-------TTSQQEVKL---DNKIKLLDTPG 154 (155)
T ss_pred HHHHHHHHHccccccccCCCCc-------ccceEEEEe---cCCEEEEECCC
Confidence 7888888887654322222222 222222222 24689999999
No 402
>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF. Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.
Probab=92.50 E-value=0.066 Score=41.78 Aligned_cols=43 Identities=26% Similarity=0.198 Sum_probs=24.8
Q ss_pred ccccHHHHHHHHhhhhccCCCCCCCCCCCCcceEEEEEEecCEEEEEEeCCCC
Q 029517 14 TKTEFHTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQ 66 (192)
Q Consensus 14 kst~~~~l~~~~~~~~~~~~~~~~~~~~~T~g~~~~~~~~~~~~~~i~D~~G~ 66 (192)
|||++|+|.++....++..++ .|.......+ . -.+.++||||.
T Consensus 131 KSslin~l~~~~~~~~~~~~g-------~T~~~~~~~~--~-~~~~l~DtPG~ 173 (276)
T TIGR03596 131 KSTLINRLAGKKVAKVGNRPG-------VTKGQQWIKL--S-DGLELLDTPGI 173 (276)
T ss_pred HHHHHHHHhCCCccccCCCCC-------eecceEEEEe--C-CCEEEEECCCc
Confidence 788888888654433333332 2333222222 1 25799999996
No 403
>cd02037 MRP-like MRP (Multiple Resistance and pH adaptation) is a homologue of the Fer4_NifH superfamily. Like the other members of the superfamily, MRP contains a ATP-binding domain at the N-termini. It is found in bacteria as a membrane-spanning protein and functions as a Na+/H+ antiporter.
Probab=91.98 E-value=1.4 Score=31.49 Aligned_cols=66 Identities=12% Similarity=0.106 Sum_probs=45.8
Q ss_pred cCEEEEEEeCCCCcccHHHHHHhh--hcCCEEEEEEeCCCcccHHHHHHHHHHHHhCCCCCCCcEEEEEeCCCC
Q 029517 54 SNSKLVFWDLGGQPGLRSIWEKYY--EEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDL 125 (192)
Q Consensus 54 ~~~~~~i~D~~G~~~~~~~~~~~~--~~~d~ii~v~D~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl 125 (192)
..+.+.|+|+|+... ....... ..+|.+++|..++ ..++..+..++..+.+.. ....-++.|+.+.
T Consensus 66 ~~yD~VIiD~pp~~~--~~~~~~~~~~~ad~viiV~~p~-~~s~~~~~~~~~~l~~~~---~~~~gvv~N~~~~ 133 (169)
T cd02037 66 GELDYLVIDMPPGTG--DEHLTLAQSLPIDGAVIVTTPQ-EVALDDVRKAIDMFKKVN---IPILGVVENMSYF 133 (169)
T ss_pred CCCCEEEEeCCCCCc--HHHHHHHhccCCCeEEEEECCc-hhhHHHHHHHHHHHHhcC---CCeEEEEEcCCcc
Confidence 467899999999742 2222233 5799999999876 456777777777776652 2345578999875
No 404
>TIGR01007 eps_fam capsular exopolysaccharide family. This model describes the capsular exopolysaccharide proteins in bacteria. The exopolysaccharide gene cluster consists of several genes which encode a number of proteins which regulate the exoploysaccharide biosynthesis(EPS). Atleast 13 genes espA to espM in streptococcus species seem to direct the EPS proteins and all of which share high homology. Functional roles were characterized by gene disruption experiments which resulted in exopolysaccharide-deficient phenotypes.
Probab=91.94 E-value=1.3 Score=32.65 Aligned_cols=67 Identities=18% Similarity=0.116 Sum_probs=44.2
Q ss_pred CEEEEEEeCCCCcccHHHHHHhhhcCCEEEEEEeCCCcccHHHHHHHHHHHHhCCCCCCCcEEEEEeCCCCC
Q 029517 55 NSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLP 126 (192)
Q Consensus 55 ~~~~~i~D~~G~~~~~~~~~~~~~~~d~ii~v~D~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~ 126 (192)
.+.+.|+|+|...... ......+.+|.+|+|+++. ..+...+...++.+... ....+-+|+||.|..
T Consensus 127 ~yD~ViiD~pp~~~~~-~~~~~~~~~D~vilV~~~~-~~~~~~~~~~~~~l~~~---~~~~~gvVlN~~~~~ 193 (204)
T TIGR01007 127 YFDYIIIDTPPIGTVT-DAAIIARACDASILVTDAG-EIKKRDVQKAKEQLEQT---GSNFLGVVLNKVDIS 193 (204)
T ss_pred cCCEEEEeCCCccccc-hHHHHHHhCCeEEEEEECC-CCCHHHHHHHHHHHHhC---CCCEEEEEEeCcccc
Confidence 5678999999743211 1223456799999999985 44566666666655443 223566789999864
No 405
>cd03112 CobW_like The function of this protein family is unkown. The amino acid sequence of YjiA protein in E. coli contains several conserved motifs that characterizes it as a P-loop GTPase. YijA gene is among the genes significantly induced in response to DNA-damage caused by mitomycin. YijA gene is a homologue of the CobW gene which encodes the cobalamin synthesis protein/P47K.
Probab=91.93 E-value=0.6 Score=33.18 Aligned_cols=64 Identities=17% Similarity=0.163 Sum_probs=36.9
Q ss_pred CEEEEEEeCCCCcccHHHHHHh--------hhcCCEEEEEEeCCCcccHH-HHHHHHHHHHhCCCCCCCcEEEEEeCCCC
Q 029517 55 NSKLVFWDLGGQPGLRSIWEKY--------YEEAHAVVFVIDAACPSRFE-DSKTALEKVLRNEDLQGAPLLILANKQDL 125 (192)
Q Consensus 55 ~~~~~i~D~~G~~~~~~~~~~~--------~~~~d~ii~v~D~~~~~s~~-~~~~~~~~i~~~~~~~~~piiiv~nK~Dl 125 (192)
.....+.|++|...-....... .-..+++++++|+....... ....+..++... =++++||+|+
T Consensus 86 ~~d~I~IEt~G~~~p~~~~~~~~~~~~~~~~~~~d~vv~vvDa~~~~~~~~~~~~~~~Qi~~a-------d~ivlnk~dl 158 (158)
T cd03112 86 AFDRIVIETTGLADPGPVAQTFFMDEELAERYLLDGVITLVDAKHANQHLDQQTEAQSQIAFA-------DRILLNKTDL 158 (158)
T ss_pred CCCEEEEECCCcCCHHHHHHHHhhchhhhcceeeccEEEEEEhhHhHHHhhccHHHHHHHHHC-------CEEEEecccC
Confidence 4577899999975433333221 22479999999986432221 112223333222 2468999996
No 406
>PRK13849 putative crown gall tumor protein VirC1; Provisional
Probab=91.92 E-value=0.86 Score=34.65 Aligned_cols=68 Identities=10% Similarity=0.151 Sum_probs=46.1
Q ss_pred cCEEEEEEeCCCCcccHHHHHHhhhcCCEEEEEEeCCCcccHHHHHHHHHHHHhC--CCCCCCcEEEEEeCCC
Q 029517 54 SNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRN--EDLQGAPLLILANKQD 124 (192)
Q Consensus 54 ~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ii~v~D~~~~~s~~~~~~~~~~i~~~--~~~~~~piiiv~nK~D 124 (192)
+.+.+.|+|+||... ......+..+|.+|+.+.++ +.++..+...+..+.+. ....+.|..++.|.++
T Consensus 82 ~~yD~iiID~pp~~~--~~~~~al~~aD~vliP~~ps-~~d~~~~~~~~~~v~~~~~~~~~~l~~~iv~~~~~ 151 (231)
T PRK13849 82 QGFDYALADTHGGSS--ELNNTIIASSNLLLIPTMLT-PLDIDEALSTYRYVIELLLSENLAIPTAILRQRVP 151 (231)
T ss_pred CCCCEEEEeCCCCcc--HHHHHHHHHCCEEEEeccCc-HHHHHHHHHHHHHHHHHHHHhCCCCCeEEEEEecc
Confidence 457999999999764 34455678899999998875 33455544544443321 1124678889999986
No 407
>cd01854 YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.
Probab=91.77 E-value=0.22 Score=39.16 Aligned_cols=53 Identities=13% Similarity=0.022 Sum_probs=29.9
Q ss_pred ccccHHHHHHHHhhhhccCCCCCCCCCCCCcceEEEEEEecCEEEEEEeCCCCccc
Q 029517 14 TKTEFHTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPGL 69 (192)
Q Consensus 14 kst~~~~l~~~~~~~~~~~~~~~~~~~~~T~g~~~~~~~~~~~~~~i~D~~G~~~~ 69 (192)
|||++|+|++........+.........+|.......+... ..++||||...+
T Consensus 174 KSTlin~l~~~~~~~~g~v~~~~~~g~~tT~~~~~~~~~~~---~~liDtPG~~~~ 226 (287)
T cd01854 174 KSTLINALLPDLDLATGEISEKLGRGRHTTTHRELFPLPGG---GLLIDTPGFREF 226 (287)
T ss_pred HHHHHHHHhchhhccccceeccCCCCCcccceEEEEEcCCC---CEEEECCCCCcc
Confidence 79999999987765444443221111123333333333222 369999998655
No 408
>TIGR03371 cellulose_yhjQ cellulose synthase operon protein YhjQ. Members of this family are the YhjQ protein, found immediately upsteam of bacterial cellulose synthase (bcs) genes in a broad range of bacteria, including both copies of the bcs locus in Klebsiella pneumoniae. In several species it is seen clearly as part of the bcs operon. It is identified as a probable component of the bacterial cellulose metabolic process not only by gene location, but also by partial phylogenetic profiling, or Haft-Selengut algorithm (PubMed:16930487), based on a bacterial cellulose biosynthesis genome property profile. Cellulose plays an important role in biofilm formation and structural integrity in some bacteria. Mutants in yhjQ in Escherichia coli, show altered morphology an growth, but the function of YhjQ has not yet been determined.
Probab=91.47 E-value=1.6 Score=33.01 Aligned_cols=67 Identities=16% Similarity=0.157 Sum_probs=45.2
Q ss_pred EEEEEeCCCCcccHHHHHHhhhcCCEEEEEEeCCCcccHHHHHHHHHHHHhCCCCCCCcEEEEEeCCCCCC
Q 029517 57 KLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPD 127 (192)
Q Consensus 57 ~~~i~D~~G~~~~~~~~~~~~~~~d~ii~v~D~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~ 127 (192)
.+.|+|+|+.. .......+..+|.+++++.++ ..++..+...+..+.... ....++-++.|+.|...
T Consensus 116 D~viiD~pp~~--~~~~~~~l~~ad~vii~~~~~-~~s~~~~~~~~~~l~~~~-~~~~~~~iv~n~~~~~~ 182 (246)
T TIGR03371 116 DWVLIDVPRGP--SPITRQALAAADLVLVVVNAD-AACYATLHQQALALFAGS-GPRIGPHFLINQFDPAR 182 (246)
T ss_pred CEEEEECCCCc--hHHHHHHHHhCCeEEEEeCCC-HHHHHHHHHHHHHHhhcc-cccccceEEeeccCcch
Confidence 79999999953 345566778999999999875 444555553333333311 12456778999998653
No 409
>cd01856 YlqF YlqF. Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.
Probab=90.18 E-value=0.19 Score=36.16 Aligned_cols=11 Identities=18% Similarity=0.268 Sum_probs=9.2
Q ss_pred EEEEEEeCCCC
Q 029517 56 SKLVFWDLGGQ 66 (192)
Q Consensus 56 ~~~~i~D~~G~ 66 (192)
..+.+|||||.
T Consensus 160 ~~~~~iDtpG~ 170 (171)
T cd01856 160 PGIYLLDTPGI 170 (171)
T ss_pred CCEEEEECCCC
Confidence 46899999994
No 410
>TIGR01968 minD_bact septum site-determining protein MinD. This model describes the bacterial and chloroplast form of MinD, a multifunctional cell division protein that guides correct placement of the septum. The homologous archaeal MinD proteins, with many archaeal genomes having two or more forms, are described by a separate model.
Probab=90.11 E-value=1.5 Score=33.47 Aligned_cols=65 Identities=11% Similarity=0.059 Sum_probs=45.4
Q ss_pred CEEEEEEeCCCCcccHHHHHHhhhcCCEEEEEEeCCCcccHHHHHHHHHHHHhCCCCCCCcEEEEEeCCCC
Q 029517 55 NSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDL 125 (192)
Q Consensus 55 ~~~~~i~D~~G~~~~~~~~~~~~~~~d~ii~v~D~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl 125 (192)
.+.+.|+|+|+.... .....+..+|.+|+++.++ ..++..+...+..+.... ..++.++.|+.+.
T Consensus 111 ~~D~viiD~p~~~~~--~~~~~l~~aD~viiv~~~~-~~s~~~~~~~~~~l~~~~---~~~~~iviN~~~~ 175 (261)
T TIGR01968 111 EFDYVIIDCPAGIES--GFRNAVAPADEAIVVTTPE-VSAVRDADRVIGLLEAKG---IEKIHLIVNRLRP 175 (261)
T ss_pred hCCEEEEeCCCCcCH--HHHHHHHhCCeEEEEcCCC-cHHHHHHHHHHHHHHHcC---CCceEEEEeCcCc
Confidence 478999999997532 2334567899999999885 455666666655555442 2367788999875
No 411
>TIGR01969 minD_arch cell division ATPase MinD, archaeal. This model represents the archaeal branch of the MinD family. MinD, a weak ATPase, works in bacteria with MinC as a generalized cell division inhibitor and, through interaction with MinE, prevents septum placement inappropriate sites. Often several members of this family are found in archaeal genomes, and the function is uncharacterized. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. The exact roles of the various archaeal MinD homologs are unknown.
Probab=90.09 E-value=1.9 Score=32.65 Aligned_cols=77 Identities=13% Similarity=0.141 Sum_probs=47.1
Q ss_pred CEEEEEEeCCCCcccHHHHHHhhhcCCEEEEEEeCCCcccHHHHHHHHHHHHhCCCCCCCc-EEEEEeCCCCCC-CCCHH
Q 029517 55 NSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAP-LLILANKQDLPD-AVSAD 132 (192)
Q Consensus 55 ~~~~~i~D~~G~~~~~~~~~~~~~~~d~ii~v~D~~~~~s~~~~~~~~~~i~~~~~~~~~p-iiiv~nK~Dl~~-~~~~~ 132 (192)
.+.+.|+|+|+.... .....+..+|.++++++++ ..++..+........ . .+.+ +.++.|+.+... ....+
T Consensus 108 ~yD~VIiD~p~~~~~--~~~~~l~~ad~vliv~~~~-~~s~~~~~~~~~~~~-~---~~~~~~~vv~N~~~~~~~~~~~~ 180 (251)
T TIGR01969 108 DTDFLLIDAPAGLER--DAVTALAAADELLLVVNPE-ISSITDALKTKIVAE-K---LGTAILGVVLNRVTRDKTELGRE 180 (251)
T ss_pred hCCEEEEeCCCccCH--HHHHHHHhCCeEEEEECCC-CchHHHHHHHHHHHH-h---cCCceEEEEEECCCchhhhhHHH
Confidence 578999999997543 3334567899999999986 444555444333222 2 2344 568999998642 22234
Q ss_pred HHHhHc
Q 029517 133 ELARYL 138 (192)
Q Consensus 133 ~~~~~~ 138 (192)
++.+.+
T Consensus 181 ~l~~~~ 186 (251)
T TIGR01969 181 EIETIL 186 (251)
T ss_pred HHHHhh
Confidence 444443
No 412
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=90.02 E-value=0.051 Score=38.89 Aligned_cols=53 Identities=11% Similarity=0.019 Sum_probs=22.1
Q ss_pred ccccHHHHHHHHhhhhccCCCCCCCCCCCCcceEEEEEEecCEEEEEEeCCCCccc
Q 029517 14 TKTEFHTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPGL 69 (192)
Q Consensus 14 kst~~~~l~~~~~~~~~~~~~~~~~~~~~T~g~~~~~~~~~~~~~~i~D~~G~~~~ 69 (192)
|||++|+|++.....+..+......---.|.......+ +-...+.||||...+
T Consensus 48 KSSLiN~L~~~~~~~t~~is~~~~rGkHTTt~~~l~~l---~~g~~iIDTPGf~~~ 100 (161)
T PF03193_consen 48 KSSLINALLPEAKQKTGEISEKTGRGKHTTTHRELFPL---PDGGYIIDTPGFRSF 100 (161)
T ss_dssp HHHHHHHHHTSS----S--------------SEEEEEE---TTSEEEECSHHHHT-
T ss_pred HHHHHHHHHhhcchhhhhhhcccCCCcccCCCeeEEec---CCCcEEEECCCCCcc
Confidence 78888888876554444444332211122222323333 224589999996543
No 413
>cd02042 ParA ParA and ParB of Caulobacter crescentus belong to a conserved family of bacterial proteins implicated in chromosome segregation. ParB binds to DNA sequences adjacent to the origin of replication and localizes to opposite cell poles shortly following the initiation of DNA replication. ParB regulates the ParA ATPase activity by promoting nucleotide exchange in a fashion reminiscent of the exchange factors of eukaryotic G proteins. ADP-bound ParA binds single-stranded DNA, whereas the ATP-bound form dissociates ParB from its DNA binding sites. Increasing the fraction of ParA-ADP in the cell inhibits cell division, suggesting that this simple nucleotide switch may regulate cytokinesis. ParA shares sequence similarity to a conserved and widespread family of ATPases which includes the repA protein of the repABC operon in R. etli Sym plasmid. This operon is involved in the plasmid replication and partition.
Probab=89.99 E-value=2.1 Score=27.64 Aligned_cols=45 Identities=18% Similarity=0.223 Sum_probs=33.2
Q ss_pred EEEEEEeCCCCcccHHHHHHhhhcCCEEEEEEeCCCcccHHHHHHHHH
Q 029517 56 SKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALE 103 (192)
Q Consensus 56 ~~~~i~D~~G~~~~~~~~~~~~~~~d~ii~v~D~~~~~s~~~~~~~~~ 103 (192)
+.+.++|+|+..... ....+..+|.++++++.+ ..++..+..+++
T Consensus 40 ~d~viiD~p~~~~~~--~~~~l~~ad~viv~~~~~-~~s~~~~~~~~~ 84 (104)
T cd02042 40 YDYIIIDTPPSLGLL--TRNALAAADLVLIPVQPS-PLDLDGLEKLLE 84 (104)
T ss_pred CCEEEEeCcCCCCHH--HHHHHHHCCEEEEeccCC-HHHHHHHHHHHH
Confidence 678999999975332 336778899999999885 455666666655
No 414
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=89.77 E-value=2.4 Score=30.30 Aligned_cols=66 Identities=20% Similarity=0.182 Sum_probs=39.7
Q ss_pred CEEEEEEeCCCCcccHHH----HHHhh--hcCCEEEEEEeCCCcccHHHHHHHHHHHHhCCCCCCCcEEEEEeCCCCCC
Q 029517 55 NSKLVFWDLGGQPGLRSI----WEKYY--EEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPD 127 (192)
Q Consensus 55 ~~~~~i~D~~G~~~~~~~----~~~~~--~~~d~ii~v~D~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~ 127 (192)
+..+.|.|++|...+... ..... ...+.+++|+|+.... ...+....+.+.. + ..-++.||.|...
T Consensus 82 ~~d~viiDt~g~~~~~~~~l~~l~~l~~~~~~~~~~lVv~~~~~~---~~~~~~~~~~~~~---~-~~~viltk~D~~~ 153 (173)
T cd03115 82 NFDVVIVDTAGRLQIDENLMEELKKIKRVVKPDEVLLVVDAMTGQ---DAVNQAKAFNEAL---G-ITGVILTKLDGDA 153 (173)
T ss_pred CCCEEEEECcccchhhHHHHHHHHHHHhhcCCCeEEEEEECCCCh---HHHHHHHHHHhhC---C-CCEEEEECCcCCC
Confidence 567889999997532221 11111 3489999999986432 2334444444332 2 3567779999765
No 415
>CHL00175 minD septum-site determining protein; Validated
Probab=89.75 E-value=1.7 Score=33.84 Aligned_cols=65 Identities=11% Similarity=0.045 Sum_probs=44.5
Q ss_pred CEEEEEEeCCCCcccHHHHHHhhhcCCEEEEEEeCCCcccHHHHHHHHHHHHhCCCCCCCcEEEEEeCCCC
Q 029517 55 NSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDL 125 (192)
Q Consensus 55 ~~~~~i~D~~G~~~~~~~~~~~~~~~d~ii~v~D~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl 125 (192)
.+.+.|+|+|+.-. ......+..+|.+++|++++ ..++..+...+..+.+.. ...+-+++|+.+.
T Consensus 126 ~yD~VIiDtpp~~~--~~~~~~l~~aD~viiV~~p~-~~si~~~~~~~~~l~~~~---~~~~~lvvN~~~~ 190 (281)
T CHL00175 126 GYDYILIDCPAGID--VGFINAIAPAQEAIVVTTPE-ITAIRDADRVAGLLEANG---IYNVKLLVNRVRP 190 (281)
T ss_pred CCCEEEEeCCCCCC--HHHHHHHHhcCeeEEEcCCC-hHHHHHHHHHHHHHHHcC---CCceEEEEeccCh
Confidence 57899999999753 23344567899999999876 445666666665555432 2345678899974
No 416
>PRK00098 GTPase RsgA; Reviewed
Probab=89.70 E-value=0.28 Score=38.78 Aligned_cols=53 Identities=11% Similarity=-0.006 Sum_probs=30.0
Q ss_pred hccccHHHHHHHHhhhhccCCCCCCCCCCCCcceEEEEEEecCEEEEEEeCCCCcc
Q 029517 13 FTKTEFHTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPG 68 (192)
Q Consensus 13 ~kst~~~~l~~~~~~~~~~~~~~~~~~~~~T~g~~~~~~~~~~~~~~i~D~~G~~~ 68 (192)
=|||++|+|++........++.......-.|.......+.. ...++||||...
T Consensus 176 GKStlin~l~~~~~~~~g~v~~~~~~G~htT~~~~~~~~~~---~~~~~DtpG~~~ 228 (298)
T PRK00098 176 GKSTLLNALAPDLELKTGEISEALGRGKHTTTHVELYDLPG---GGLLIDTPGFSS 228 (298)
T ss_pred CHHHHHHHHhCCcCCCCcceeccCCCCCcccccEEEEEcCC---CcEEEECCCcCc
Confidence 37899999987766555555442222212333333333332 248999999754
No 417
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=89.64 E-value=2.1 Score=35.71 Aligned_cols=66 Identities=14% Similarity=0.119 Sum_probs=39.4
Q ss_pred CEEEEEEeCCCCcccHHH----HHHh--hhcCCEEEEEEeCCCcccHHHHHHHHHHHHhCCCCCCCcEEEEEeCCCCCC
Q 029517 55 NSKLVFWDLGGQPGLRSI----WEKY--YEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPD 127 (192)
Q Consensus 55 ~~~~~i~D~~G~~~~~~~----~~~~--~~~~d~ii~v~D~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~ 127 (192)
.+.+.|+||+|....... ...+ ....+-+++|+|++....-. .....+.+. -.+--+|+||.|...
T Consensus 182 ~~DvViIDTaGr~~~d~~lm~El~~i~~~~~p~e~lLVlda~~Gq~a~---~~a~~F~~~----~~~~g~IlTKlD~~a 253 (429)
T TIGR01425 182 NFDIIIVDTSGRHKQEDSLFEEMLQVAEAIQPDNIIFVMDGSIGQAAE---AQAKAFKDS----VDVGSVIITKLDGHA 253 (429)
T ss_pred CCCEEEEECCCCCcchHHHHHHHHHHhhhcCCcEEEEEeccccChhHH---HHHHHHHhc----cCCcEEEEECccCCC
Confidence 578999999996543222 1222 12467899999987553222 222222221 235667899999754
No 418
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=89.09 E-value=2 Score=35.83 Aligned_cols=67 Identities=15% Similarity=0.156 Sum_probs=39.1
Q ss_pred cCEEEEEEeCCCCcccHH----HHHHh--hhcCCEEEEEEeCCCcccHHHHHHHHHHHHhCCCCCCCcEEEEEeCCCCCC
Q 029517 54 SNSKLVFWDLGGQPGLRS----IWEKY--YEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPD 127 (192)
Q Consensus 54 ~~~~~~i~D~~G~~~~~~----~~~~~--~~~~d~ii~v~D~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~ 127 (192)
..+.+.|+||+|...... ....+ .-..+.+++|+|+... +.+......+.... + ..=+|.||.|...
T Consensus 181 ~~~DvVIIDTaGr~~~d~~l~~eL~~i~~~~~p~e~lLVvda~tg---q~~~~~a~~f~~~v---~-i~giIlTKlD~~~ 253 (428)
T TIGR00959 181 NGFDVVIVDTAGRLQIDEELMEELAAIKEILNPDEILLVVDAMTG---QDAVNTAKTFNERL---G-LTGVVLTKLDGDA 253 (428)
T ss_pred cCCCEEEEeCCCccccCHHHHHHHHHHHHhhCCceEEEEEeccch---HHHHHHHHHHHhhC---C-CCEEEEeCccCcc
Confidence 356899999999643211 11111 2357889999998754 33333434443221 2 3456799999654
No 419
>PRK13505 formate--tetrahydrofolate ligase; Provisional
Probab=88.77 E-value=1.8 Score=37.10 Aligned_cols=57 Identities=23% Similarity=0.180 Sum_probs=42.6
Q ss_pred CCCcEEEEEeCCCCCCCCCHHHHHhHcCccccCCcceEEEEeee--cCCCCHHHHHHHHHHHHH
Q 029517 112 QGAPLLILANKQDLPDAVSADELARYLDLKKLDERVCMFEAVSG--YDGFGIKESVEWLVEVME 173 (192)
Q Consensus 112 ~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa--~~~~gi~e~~~~i~~~i~ 173 (192)
.++|+++++||.|.....+.+.+.+++. ..++++..+.. +-|.|-.++-+.+.+.+.
T Consensus 371 FGvPvVVAINKFd~DTe~Ei~~I~~~c~-----e~Gv~va~~~~~~~Gg~Gai~LA~aVveA~~ 429 (557)
T PRK13505 371 FGVPVVVAINKFVTDTDAEIAALKELCE-----ELGVEVALSEVWAKGGEGGVELAEKVVELIE 429 (557)
T ss_pred cCCCEEEEEeCCCCCCHHHHHHHHHHHH-----HcCCCEEEecccccCCcchHHHHHHHHHHHh
Confidence 4799999999999876556677888887 55667665554 447788888777777666
No 420
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=88.75 E-value=4.9 Score=33.68 Aligned_cols=65 Identities=18% Similarity=0.171 Sum_probs=38.0
Q ss_pred EEEEEEeCCCCcccHHHH----HH--hhhcCCEEEEEEeCCCcccHHHHHHHHHHHHhCCCCCCCcEEEEEeCCCCCC
Q 029517 56 SKLVFWDLGGQPGLRSIW----EK--YYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPD 127 (192)
Q Consensus 56 ~~~~i~D~~G~~~~~~~~----~~--~~~~~d~ii~v~D~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~ 127 (192)
..+.|+||+|........ .. ....+|.+++|+|++... .+......+... . ...-+|.||.|...
T Consensus 176 ~DvVIIDTAGr~~~d~~lm~El~~l~~~~~pdevlLVvda~~gq---~av~~a~~F~~~---l-~i~gvIlTKlD~~a 246 (437)
T PRK00771 176 ADVIIVDTAGRHALEEDLIEEMKEIKEAVKPDEVLLVIDATIGQ---QAKNQAKAFHEA---V-GIGGIIITKLDGTA 246 (437)
T ss_pred CCEEEEECCCcccchHHHHHHHHHHHHHhcccceeEEEeccccH---HHHHHHHHHHhc---C-CCCEEEEecccCCC
Confidence 478999999976433221 11 133688999999987642 222222332221 1 12356789999754
No 421
>cd02032 Bchl_like This family of proteins contains bchL and chlL. Protochlorophyllide reductase catalyzes the reductive formation of chlorophyllide from protochlorophyllide during biosynthesis of chlorophylls and bacteriochlorophylls. Three genes, bchL, bchN and bchB, are involved in light-independent protochlorophyllide reduction in bacteriochlorophyll biosynthesis. In cyanobacteria, algae, and gymnosperms, three similar genes, chlL, chlN and chlB are involved in protochlorophyllide reduction during chlorophylls biosynthesis. BchL/chlL, bchN/chlN and bchB/chlB exhibit significant sequence similarity to the nifH, nifD and nifK subunits of nitrogenase, respectively. Nitrogenase catalyzes the reductive formation of ammonia from dinitrogen.
Probab=88.66 E-value=1.8 Score=33.46 Aligned_cols=69 Identities=14% Similarity=0.139 Sum_probs=42.0
Q ss_pred CEEEEEEeCCCCcccHHHHHHhhhcCCEEEEEEeCCCcccHHHHHHHHHHHHhCCCCCCCcE-EEEEeCCCC
Q 029517 55 NSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPL-LILANKQDL 125 (192)
Q Consensus 55 ~~~~~i~D~~G~~~~~~~~~~~~~~~d~ii~v~D~~~~~s~~~~~~~~~~i~~~~~~~~~pi-iiv~nK~Dl 125 (192)
++.+.|.||+|...... ....+..+|.+|+++.++ ..++..+...+..+.......+.++ .++.|+.|.
T Consensus 115 ~yD~vIIDt~g~~~~~~-~~~al~~aD~vlip~~p~-~~~l~~~~~~~~~i~~~~~~~~l~~~giV~Nr~~~ 184 (267)
T cd02032 115 EYDVILFDVLGDVVCGG-FAAPLNYADYALIVTDND-FDSIFAANRIAAAVREKAKTYKVRLAGLIANRTDK 184 (267)
T ss_pred cCCEEEEeCCCCccccc-chhhhhhcCEEEEEecCC-cccHHHHHHHHHHHHHHhhccCCceEEEEEeCCCH
Confidence 57899999988643211 122367899999999875 4445555554444432211134553 467899984
No 422
>KOG0780 consensus Signal recognition particle, subunit Srp54 [Intracellular trafficking, secretion, and vesicular transport]
Probab=88.28 E-value=2.6 Score=34.63 Aligned_cols=47 Identities=21% Similarity=0.345 Sum_probs=29.9
Q ss_pred EEecCEEEEEEeCCCCccc-HHHHHHh-----hhcCCEEEEEEeCCCcccHHH
Q 029517 51 IEVSNSKLVFWDLGGQPGL-RSIWEKY-----YEEAHAVVFVIDAACPSRFED 97 (192)
Q Consensus 51 ~~~~~~~~~i~D~~G~~~~-~~~~~~~-----~~~~d~ii~v~D~~~~~s~~~ 97 (192)
+...++.+.|+||+|.-.- ..+.+.. .-+.|-+|+|+|++-..+-+.
T Consensus 179 fKke~fdvIIvDTSGRh~qe~sLfeEM~~v~~ai~Pd~vi~VmDasiGQaae~ 231 (483)
T KOG0780|consen 179 FKKENFDVIIVDTSGRHKQEASLFEEMKQVSKAIKPDEIIFVMDASIGQAAEA 231 (483)
T ss_pred HHhcCCcEEEEeCCCchhhhHHHHHHHHHHHhhcCCCeEEEEEeccccHhHHH
Confidence 4456789999999994321 1111111 124799999999987654443
No 423
>COG0523 Putative GTPases (G3E family) [General function prediction only]
Probab=88.20 E-value=3.7 Score=32.95 Aligned_cols=100 Identities=21% Similarity=0.133 Sum_probs=57.8
Q ss_pred CEEEEEEeCCCCcccHHHHHHhhh--------cCCEEEEEEeCCCcccHHH-HHHHHHHHHhCCCCCCCcEEEEEeCCCC
Q 029517 55 NSKLVFWDLGGQPGLRSIWEKYYE--------EAHAVVFVIDAACPSRFED-SKTALEKVLRNEDLQGAPLLILANKQDL 125 (192)
Q Consensus 55 ~~~~~i~D~~G~~~~~~~~~~~~~--------~~d~ii~v~D~~~~~s~~~-~~~~~~~i~~~~~~~~~piiiv~nK~Dl 125 (192)
.+...++.+.|-..-.+....+.. ..|++|-|+|+..-..... +.+......... =++++||.|+
T Consensus 84 ~~D~ivIEtTGlA~P~pv~~t~~~~~~l~~~~~ld~vvtvVDa~~~~~~~~~~~~~~~~Qia~A------D~ivlNK~Dl 157 (323)
T COG0523 84 RPDRLVIETTGLADPAPVIQTFLTDPELADGVRLDGVVTVVDAAHFLEGLDAIAELAEDQLAFA------DVIVLNKTDL 157 (323)
T ss_pred CCCEEEEeCCCCCCCHHHHHHhccccccccceeeceEEEEEeHHHhhhhHHHHHHHHHHHHHhC------cEEEEecccC
Confidence 366788999997655454444333 2588999999976433222 333333333332 3588999999
Q ss_pred CCCCCHHHHHhHcCccccCCcceEEEEeeecCCCCHHHH
Q 029517 126 PDAVSADELARYLDLKKLDERVCMFEAVSGYDGFGIKES 164 (192)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~e~ 164 (192)
.+....+.+.+.+.. -+...+++.+|. .+....++
T Consensus 158 v~~~~l~~l~~~l~~---lnp~A~i~~~~~-~~~~~~~l 192 (323)
T COG0523 158 VDAEELEALEARLRK---LNPRARIIETSY-GDVDLAEL 192 (323)
T ss_pred CCHHHHHHHHHHHHH---hCCCCeEEEccc-cCCCHHHh
Confidence 874444444444431 134567777776 33344333
No 424
>PRK13185 chlL protochlorophyllide reductase iron-sulfur ATP-binding protein; Provisional
Probab=87.37 E-value=1.9 Score=33.29 Aligned_cols=69 Identities=10% Similarity=0.081 Sum_probs=43.0
Q ss_pred CEEEEEEeCCCCcccHHHHHHhhhcCCEEEEEEeCCCcccHHHHHHHHHHHHhCCCCCCCcE-EEEEeCCCC
Q 029517 55 NSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPL-LILANKQDL 125 (192)
Q Consensus 55 ~~~~~i~D~~G~~~~~~~~~~~~~~~d~ii~v~D~~~~~s~~~~~~~~~~i~~~~~~~~~pi-iiv~nK~Dl 125 (192)
++.+.|+||+|...... ....+..+|.+|+++.++ ..++..+...+..+.......+.++ -++.|+.+.
T Consensus 117 ~yD~viIDt~g~~~~~~-~~~~l~~AD~viip~~~~-~~sl~~~~~~~~~i~~~~~~~~l~i~giv~N~~~~ 186 (270)
T PRK13185 117 DYDVILFDVLGDVVCGG-FAAPLQYADYALIVTAND-FDSIFAANRIAAAIQAKAKNYKVRLAGVIANRSAG 186 (270)
T ss_pred cCCEEEEecCCCcccCc-ccchhhhCcEEEEEecCc-hhhHHHHHHHHHHHHhhhhccCCCceEEEEeccCh
Confidence 57899999988642221 223367799999999764 4556665555554443221245664 478899773
No 425
>PRK13796 GTPase YqeH; Provisional
Probab=87.29 E-value=0.57 Score=38.20 Aligned_cols=50 Identities=8% Similarity=-0.073 Sum_probs=25.3
Q ss_pred hccccHHHHHHHHhhhhccCCCCCCCCCCCCcceEEEEEEecCEEEEEEeCCCCc
Q 029517 13 FTKTEFHTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQP 67 (192)
Q Consensus 13 ~kst~~~~l~~~~~~~~~~~~~~~~~~~~~T~g~~~~~~~~~~~~~~i~D~~G~~ 67 (192)
=|||++|+|+++..+.... .........|.+.....+.. ...++||||-.
T Consensus 172 GKSTLiN~L~~~~~~~~~~--~~~s~~pGTT~~~~~~~l~~---~~~l~DTPGi~ 221 (365)
T PRK13796 172 GKSTLINRIIKEITGEKDV--ITTSRFPGTTLDKIEIPLDD---GSFLYDTPGII 221 (365)
T ss_pred cHHHHHHHHHhhccCccce--EEecCCCCccceeEEEEcCC---CcEEEECCCcc
Confidence 4899999999765331100 00111112333332223322 24799999963
No 426
>KOG1424 consensus Predicted GTP-binding protein MMR1 [General function prediction only]
Probab=85.80 E-value=0.25 Score=41.62 Aligned_cols=45 Identities=16% Similarity=0.211 Sum_probs=32.7
Q ss_pred hhhccccHHHHHHHHhhhhccCCCCCCCCCCCCcceEEEEEEecCEEEEEEeCCC
Q 029517 11 YIFTKTEFHTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGG 65 (192)
Q Consensus 11 ~~~kst~~~~l~~~~~~~~~~~~~~~~~~~~~T~g~~~~~~~~~~~~~~i~D~~G 65 (192)
++=|||.+|+|.++..-.++.+|+++ .+.. ++.. .-.+.++|+||
T Consensus 324 NVGKSSTINaLvG~KkVsVS~TPGkT--KHFQ-------Ti~l-s~~v~LCDCPG 368 (562)
T KOG1424|consen 324 NVGKSSTINALVGRKKVSVSSTPGKT--KHFQ-------TIFL-SPSVCLCDCPG 368 (562)
T ss_pred CCchhHHHHHHhcCceeeeecCCCCc--ceeE-------EEEc-CCCceecCCCC
Confidence 46699999999999888777877765 2222 2222 33688999999
No 427
>KOG4273 consensus Uncharacterized conserved protein [Function unknown]
Probab=85.80 E-value=1.5 Score=33.80 Aligned_cols=45 Identities=29% Similarity=0.230 Sum_probs=32.8
Q ss_pred hcCCEEEEEEeCCCcccHHHHHHHHHHHHhCCCCCCC-cEEEEEeCCCCC
Q 029517 78 EEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGA-PLLILANKQDLP 126 (192)
Q Consensus 78 ~~~d~ii~v~D~~~~~s~~~~~~~~~~i~~~~~~~~~-piiiv~nK~Dl~ 126 (192)
....++++|||.+....+..++.|+....-. .. .++.++||.|..
T Consensus 77 ~pl~a~vmvfdlse~s~l~alqdwl~htdin----sfdillcignkvdrv 122 (418)
T KOG4273|consen 77 EPLQAFVMVFDLSEKSGLDALQDWLPHTDIN----SFDILLCIGNKVDRV 122 (418)
T ss_pred cceeeEEEEEeccchhhhHHHHhhccccccc----cchhheecccccccc
Confidence 4467899999999998999999986533221 22 355689999974
No 428
>cd02117 NifH_like This family contains the NifH (iron protein) of nitrogenase, L subunit (BchL/ChlL) of the protochlorophyllide reductase and the BchX subunit of the Chlorophyllide reductase. Members of this family use energey from ATP hydrolysis and transfer electrons through a Fe4-S4 cluster to other subunit for reduction of substrate.
Probab=85.66 E-value=3.7 Score=30.52 Aligned_cols=72 Identities=10% Similarity=0.067 Sum_probs=41.8
Q ss_pred cCEEEEEEeCCCCcccHHHHH-HhhhcCCEEEEEEeCCCcccHHHHHHHHHHHHhCCCCCCC-cEEEEEeCCCCC
Q 029517 54 SNSKLVFWDLGGQPGLRSIWE-KYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGA-PLLILANKQDLP 126 (192)
Q Consensus 54 ~~~~~~i~D~~G~~~~~~~~~-~~~~~~d~ii~v~D~~~~~s~~~~~~~~~~i~~~~~~~~~-piiiv~nK~Dl~ 126 (192)
.++.+.++|++|......... ...+.+|.++++++++ ..++..+...++.+.......+. ...++.|+.+..
T Consensus 115 ~~yD~ilID~~g~~~~~~~~~~l~~~~ad~vliv~~p~-~~sl~~~~~l~~~i~~~~~~~~~~~~gvv~N~~~~~ 188 (212)
T cd02117 115 DDLDVVLYDVLGDVVCGGFAMPIREGKADEIYIVTSGE-FMALYAANNICKGIRKYAKSGGVRLGGLICNSRNTD 188 (212)
T ss_pred cCCCEEEEecCCCceecccccccccccCcEEEEEeccc-HHHHHHHHHHHHHHHHhCcccCCcEEEEEEeCCCCc
Confidence 357899999987542111110 0124799999999875 44454444444444433221233 355899999854
No 429
>PRK10818 cell division inhibitor MinD; Provisional
Probab=85.51 E-value=4.2 Score=31.36 Aligned_cols=115 Identities=10% Similarity=-0.005 Sum_probs=64.9
Q ss_pred CEEEEEEeCCCCcccHHHHHHhhhcCCEEEEEEeCCCcccHHHHHHHHHHHHhCC-----CCCCCcEEEEEeCCCCCC--
Q 029517 55 NSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNE-----DLQGAPLLILANKQDLPD-- 127 (192)
Q Consensus 55 ~~~~~i~D~~G~~~~~~~~~~~~~~~d~ii~v~D~~~~~s~~~~~~~~~~i~~~~-----~~~~~piiiv~nK~Dl~~-- 127 (192)
.+.+.|.|+|+..... ....+..+|.++++++++ ..++..+...+..+.... ...+.+..++.|+.|...
T Consensus 113 ~yd~viiD~p~~~~~~--~~~~l~~ad~vivv~~p~-~~sl~~~~~~l~~i~~~~~~~~~~~~~~~~~vv~n~~~~~~~~ 189 (270)
T PRK10818 113 DFEFIVCDSPAGIETG--ALMALYFADEAIITTNPE-VSSVRDSDRILGILASKSRRAENGEEPIKEHLLLTRYNPGRVS 189 (270)
T ss_pred CCCEEEEeCCCCccHH--HHHHHHhCCeEEEEcCCC-chHHHhHHHHHHHHHHhhccccccccccceEEEEeccCHhhhh
Confidence 5789999999876432 334568899999999986 445666655555554211 111234577889887532
Q ss_pred ---CCCHHHHHhHcCcc------------ccCCcceEEEEeeecCCCCHHHHHHHHHHHHHhc
Q 029517 128 ---AVSADELARYLDLK------------KLDERVCMFEAVSGYDGFGIKESVEWLVEVMERS 175 (192)
Q Consensus 128 ---~~~~~~~~~~~~~~------------~~~~~~~~~~~~Sa~~~~gi~e~~~~i~~~i~~~ 175 (192)
....+++.+..... .....+.++. . ..+.-....+..|.+.+...
T Consensus 190 ~~~~~~~~~~~~~~g~~~~~~Ip~~~~v~~a~~~G~~v~-~--~~~~~~~~~~~~la~~l~~~ 249 (270)
T PRK10818 190 RGDMLSMEDVLEILRIKLVGVIPEDQSVLRASNQGEPVI-L--DIEADAGKAYADTVDRLLGE 249 (270)
T ss_pred hcccccHHHHHHHhCCcEEEEecCCHHHHHHHHcCCeeE-e--CCCCHHHHHHHHHHHHHhCC
Confidence 11234444433311 0112234433 1 22334566688887777643
No 430
>TIGR03815 CpaE_hom_Actino helicase/secretion neighborhood CpaE-like protein. Members of this protein family belong to the MinD/ParA family of P-loop NTPases, and in particular show homology to the CpaE family of pilus assembly proteins (see PubMed:12370432). Nearly all members are found, not only in a gene context consistent with pilus biogenesis or a pilus-like secretion apparatus, but also near a DEAD/DEAH-box helicase, suggesting an involvement in DNA transfer activity. The model describes a clade restricted to the Actinobacteria.
Probab=85.00 E-value=8.1 Score=30.77 Aligned_cols=77 Identities=19% Similarity=0.190 Sum_probs=50.8
Q ss_pred CEEEEEEeCCCCcccHHHHHHhhhcCCEEEEEEeCCCcccHHHHHHHHHHHHhCCCCCCCcEEEEEeCCCCCCCCCHHHH
Q 029517 55 NSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAVSADEL 134 (192)
Q Consensus 55 ~~~~~i~D~~G~~~~~~~~~~~~~~~d~ii~v~D~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~~~~~~~~ 134 (192)
.+.+.|+|+|+.... .....+..+|.+++|++.+ ..++..+..++..+.... ..+-++.|.... .....+++
T Consensus 204 ~~D~VIID~p~~~~~--~~~~~L~~AD~vliV~~~~-~~sl~~a~r~l~~l~~~~----~~~~lVv~~~~~-~~~~~~~i 275 (322)
T TIGR03815 204 GGDLVVVDLPRRLTP--AAETALESADLVLVVVPAD-VRAVAAAARVCPELGRRN----PDLRLVVRGPAP-AGLDPEEI 275 (322)
T ss_pred cCCEEEEeCCCCCCH--HHHHHHHHCCEEEEEcCCc-HHHHHHHHHHHHHHhhhC----CCeEEEEeCCCC-CCCCHHHH
Confidence 578999999997542 3556788999999999875 445666666666554432 234455676432 34456777
Q ss_pred HhHcC
Q 029517 135 ARYLD 139 (192)
Q Consensus 135 ~~~~~ 139 (192)
.+.+.
T Consensus 276 ~~~lg 280 (322)
T TIGR03815 276 AESLG 280 (322)
T ss_pred HHHhC
Confidence 77665
No 431
>PRK10867 signal recognition particle protein; Provisional
Probab=84.89 E-value=4.3 Score=34.00 Aligned_cols=67 Identities=15% Similarity=0.167 Sum_probs=37.8
Q ss_pred cCEEEEEEeCCCCcccHH----HHHHh--hhcCCEEEEEEeCCCcccHHHHHHHHHHHHhCCCCCCCcEEEEEeCCCCCC
Q 029517 54 SNSKLVFWDLGGQPGLRS----IWEKY--YEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPD 127 (192)
Q Consensus 54 ~~~~~~i~D~~G~~~~~~----~~~~~--~~~~d~ii~v~D~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~ 127 (192)
..+.+.|+||+|...... ..... .-..+.+++|+|+... +.+......+.+. .+ ..-+|.||.|...
T Consensus 182 ~~~DvVIIDTaGrl~~d~~lm~eL~~i~~~v~p~evllVlda~~g---q~av~~a~~F~~~---~~-i~giIlTKlD~~~ 254 (433)
T PRK10867 182 NGYDVVIVDTAGRLHIDEELMDELKAIKAAVNPDEILLVVDAMTG---QDAVNTAKAFNEA---LG-LTGVILTKLDGDA 254 (433)
T ss_pred cCCCEEEEeCCCCcccCHHHHHHHHHHHHhhCCCeEEEEEecccH---HHHHHHHHHHHhh---CC-CCEEEEeCccCcc
Confidence 357899999999643211 11111 1256788999998643 3333333333322 11 2346679999654
No 432
>PF01656 CbiA: CobQ/CobB/MinD/ParA nucleotide binding domain; InterPro: IPR002586 This entry consists of various cobyrinic acid a,c-diamide synthases. These include CbiA and CbiP from Salmonella typhimurium []., and CobQ from Rhodobacter capsulatus []. These amidases catalyse amidations to various side chains of hydrogenobyrinic acid or cobyrinic acid a,c-diamide in the biosynthesis of cobalamin (vitamin B12) from uroporphyrinogen III. Vitamin B12 is an important cofactor and an essential nutrient for many plants and animals and is primarily produced by bacteria [].; PDB: 3K9G_A 3K9H_B 3EZ9_B 3EZF_A 3EZ2_B 3EZ6_A 3EZ7_A 1G3Q_A 1G3R_A 1DTS_A ....
Probab=83.56 E-value=3.1 Score=30.03 Aligned_cols=68 Identities=15% Similarity=0.082 Sum_probs=49.2
Q ss_pred EEEEEEeCCCCcccHHHHHHhhhcCCEEEEEEeCCCcccHHHHHHHHHHHHhCCCCCCCcEEEEEeCCCCCC
Q 029517 56 SKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPD 127 (192)
Q Consensus 56 ~~~~i~D~~G~~~~~~~~~~~~~~~d~ii~v~D~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~ 127 (192)
+.+.|.|+|+..... ....+..+|.+|++++++. .+...+..++..+..... ....+.+|.||.+..+
T Consensus 95 yD~iiiD~~~~~~~~--~~~~l~~ad~viv~~~~~~-~~i~~~~~~~~~l~~~~~-~~~~~~vv~N~v~~~~ 162 (195)
T PF01656_consen 95 YDYIIIDTPPGLSDP--VRNALAAADYVIVPIEPDP-SSIEGAERLIELLKRLGK-KLKIIGVVINRVDPGN 162 (195)
T ss_dssp SSEEEEEECSSSSHH--HHHHHHTSSEEEEEEESSH-HHHHHHHHHHHHHHHHTH-TEEEEEEEEEEETSCC
T ss_pred ccceeecccccccHH--HHHHHHhCceeeeecCCcH-HHHHHHHHHHHHHHHhcc-ccceEEEEEeeeCCCc
Confidence 788999999975433 5557789999999999874 457777777776665421 1235678999998653
No 433
>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH. This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.
Probab=83.14 E-value=1.2 Score=36.28 Aligned_cols=48 Identities=15% Similarity=0.072 Sum_probs=25.2
Q ss_pred hccccHHHHHHHHhhh--hccCCCCCCCCCCCCcceEEEEEEecCEEEEEEeCCCCc
Q 029517 13 FTKTEFHTLLEKLKSV--YSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQP 67 (192)
Q Consensus 13 ~kst~~~~l~~~~~~~--~~~~~~~~~~~~~~T~g~~~~~~~~~~~~~~i~D~~G~~ 67 (192)
=|||++|+|+++.... ...++ .....|.+.. .+.. .-.+.++||||-.
T Consensus 166 GKStliN~l~~~~~~~~~~~~~s----~~pgtT~~~~--~~~~-~~~~~l~DtPG~~ 215 (360)
T TIGR03597 166 GKSSLINKLLKQNNGDKDVITTS----PFPGTTLDLI--EIPL-DDGHSLYDTPGII 215 (360)
T ss_pred CHHHHHHHHHhhccCCcceeeec----CCCCeEeeEE--EEEe-CCCCEEEECCCCC
Confidence 4899999999865421 01111 1122333333 2222 1235799999954
No 434
>TIGR03029 EpsG chain length determinant protein tyrosine kinase EpsG. The proteins in this family are homologs of the EpsG protein found in Methylobacillus strain 12S and are generally found in operons with other Eps homologs. The protein is believed to function as the protein tyrosine kinase component of the chain length regulator (along with the transmembrane component EpsF).
Probab=83.07 E-value=8.5 Score=29.75 Aligned_cols=62 Identities=13% Similarity=0.082 Sum_probs=41.6
Q ss_pred CEEEEEEeCCCCcccHHHHHHhhhcCCEEEEEEeCCCcccHHHHHHHHHHHHhCCCCCCCc-EEEEEeC
Q 029517 55 NSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAP-LLILANK 122 (192)
Q Consensus 55 ~~~~~i~D~~G~~~~~~~~~~~~~~~d~ii~v~D~~~~~s~~~~~~~~~~i~~~~~~~~~p-iiiv~nK 122 (192)
.+.+.|+|+|...... ........+|++|+|+... ..+...+...++.+... +.+ +=+|+|+
T Consensus 212 ~yD~ViiD~pp~~~~~-d~~~~~~~~d~vilV~~~~-~t~~~~~~~~~~~l~~~----~~~~~G~VlN~ 274 (274)
T TIGR03029 212 DYDVVIVDTPSAEHSS-DAQIVATRARGTLIVSRVN-ETRLHELTSLKEHLSGV----GVRVVGAVLNQ 274 (274)
T ss_pred cCCEEEEeCCCccccc-HHHHHHHhCCeEEEEEECC-CCCHHHHHHHHHHHHhC----CCCEEEEEeCC
Confidence 5789999999864322 2334567899999999875 45677777777776654 333 4455564
No 435
>CHL00072 chlL photochlorophyllide reductase subunit L
Probab=82.89 E-value=5.1 Score=31.55 Aligned_cols=116 Identities=7% Similarity=0.023 Sum_probs=62.3
Q ss_pred CEEEEEEeCCCCcccHHHHHHhhhcCCEEEEEEeCCCcccHHHHHHHHHHHHhCCCCCCCc-EEEEEeCCCCCCCCCHHH
Q 029517 55 NSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAP-LLILANKQDLPDAVSADE 133 (192)
Q Consensus 55 ~~~~~i~D~~G~~~~~~~~~~~~~~~d~ii~v~D~~~~~s~~~~~~~~~~i~~~~~~~~~p-iiiv~nK~Dl~~~~~~~~ 133 (192)
++.+.++||+|...... ....+..||.+|++++++ ..++..+...++.+.......+.+ .-++.|+.+... ..++
T Consensus 115 ~yD~IiIDt~~~l~~~a-~~aal~~AD~viIp~~p~-~~sl~~~~~l~~~i~~~~~~~~l~~~gvv~n~~~~~~--~~~~ 190 (290)
T CHL00072 115 EYDIILFDVLGDVVCGG-FAAPLNYADYCIIITDNG-FDALFAANRIAASVREKARTHPLRLAGLVGNRTSKRD--LIDK 190 (290)
T ss_pred cCCEEEEecCCcceech-hhhhhhcCCEEEEEecCC-HHHHHHHHHHHHHHHHHhccCCCceEEEEEeCCCchh--HHHH
Confidence 56899999988632221 223457899999999875 445555555544443322113443 447889997422 1222
Q ss_pred HHhHcCcc------------ccCCcceEEEEeeecCCCC---HHHHHHHHHHHHHhc
Q 029517 134 LARYLDLK------------KLDERVCMFEAVSGYDGFG---IKESVEWLVEVMERS 175 (192)
Q Consensus 134 ~~~~~~~~------------~~~~~~~~~~~~Sa~~~~g---i~e~~~~i~~~i~~~ 175 (192)
..+.+... .....+.++++.+. ...+ .-..+..+.+.+...
T Consensus 191 ~~~~~~~~vl~~Ip~~~~v~~A~~~g~pv~~~~p-~s~~~~~~a~~y~~La~ell~~ 246 (290)
T CHL00072 191 YVEACPMPVLEVLPLIEDIRVSRVKGKTLFEMVE-SEPSLNYVCDYYLNIADQLLSQ 246 (290)
T ss_pred HHHHcCCceEEECCCChHHHHHHhCCCceEEeCC-CCcchhHHHHHHHHHHHHHHhC
Confidence 22222210 11123455555533 3333 456677777777654
No 436
>PF07015 VirC1: VirC1 protein; InterPro: IPR009744 This family consists of several bacterial VirC1 proteins. In Agrobacterium tumefaciens, a cis-active 24-base-pair sequence adjacent to the right border of the T-DNA, called overdrive, stimulates tumour formation by increasing the level of T-DNA processing. It is thought that the virC operon, which enhances T-DNA processing probably, does so because the VirC1 protein interacts with overdrive. It has now been shown that the virC1 gene product binds to overdrive but not to the right border of T-DNA [].
Probab=82.83 E-value=4.3 Score=30.90 Aligned_cols=101 Identities=9% Similarity=0.077 Sum_probs=59.3
Q ss_pred CEEEEEEeCCCCcccHHHHHHhhhcCCEEEEEEeCCCcccHHHH---HHHHHHHHhCCCCCCCcEEEEEeCCCCCCC-CC
Q 029517 55 NSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDS---KTALEKVLRNEDLQGAPLLILANKQDLPDA-VS 130 (192)
Q Consensus 55 ~~~~~i~D~~G~~~~~~~~~~~~~~~d~ii~v~D~~~~~s~~~~---~~~~~~i~~~~~~~~~piiiv~nK~Dl~~~-~~ 130 (192)
.+.+.|+|+.|.... .....+..+|.+|+=.-.+..+ .++. ..|+.+..+.. ..++|.-++.|++.-... ..
T Consensus 83 ~~d~VlvDleG~as~--~~~~aia~sDlVlIP~~~s~lD-~~eA~~t~~~v~~~~~~~-~~~ip~~Vl~Tr~~~~~~~~~ 158 (231)
T PF07015_consen 83 GFDFVLVDLEGGASE--LNDYAIARSDLVLIPMQPSQLD-ADEAAKTFKWVRRLEKAE-RRDIPAAVLFTRVPAARLTRA 158 (231)
T ss_pred CCCEEEEeCCCCCch--hHHHHHHHCCEEEECCCCChHH-HHHHHHHHHHHHHHHHhh-CCCCCeeEEEecCCcchhhHH
Confidence 468999999997632 3445667899999888666332 3333 33444443321 257899999999973321 11
Q ss_pred HHHHHhHcCccccCCcceEEEEeeecCCCCHHHHHH
Q 029517 131 ADELARYLDLKKLDERVCMFEAVSGYDGFGIKESVE 166 (192)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~e~~~ 166 (192)
...+.+.++ .++++.+.-.......++|.
T Consensus 159 ~~~~~e~~~-------~lpvl~t~l~eR~Af~~m~~ 187 (231)
T PF07015_consen 159 QRIISEQLE-------SLPVLDTELHERDAFRAMFS 187 (231)
T ss_pred HHHHHHHHh-------cCCccccccccHHHHHHHHH
Confidence 122333333 36677776666544444444
No 437
>TIGR01281 DPOR_bchL light-independent protochlorophyllide reductase, iron-sulfur ATP-binding protein. The BchL peptide (ChlL in chloroplast and cyanobacteria) is an ATP-binding iron-sulfur protein of the dark form protochlorophyllide reductase, an enzyme similar to nitrogenase. This subunit resembles the nitrogenase NifH subunit.
Probab=81.21 E-value=4.5 Score=31.20 Aligned_cols=70 Identities=11% Similarity=0.092 Sum_probs=42.1
Q ss_pred CEEEEEEeCCCCcccHHHHHHhhhcCCEEEEEEeCCCcccHHHHHHHHHHHHhCCCCCCCc-EEEEEeCCCCC
Q 029517 55 NSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAP-LLILANKQDLP 126 (192)
Q Consensus 55 ~~~~~i~D~~G~~~~~~~~~~~~~~~d~ii~v~D~~~~~s~~~~~~~~~~i~~~~~~~~~p-iiiv~nK~Dl~ 126 (192)
.+.+.|+||+|....... ...+..+|.+|+++.++ ..++..+...++.+.+.....+.+ ..+|.|+.+..
T Consensus 115 ~yD~ViID~~~~~~~~~~-~~~l~aAD~vlip~~~~-~~sl~~~~~l~~~i~~~~~~~~l~~~gIV~N~~~~~ 185 (268)
T TIGR01281 115 DYDVILFDVLGDVVCGGF-ATPLQYADYALVVAAND-FDALFAANRIAASVQEKAKNYDVRLAGIIGNRSDAT 185 (268)
T ss_pred cCCEEEEecCCccccCcc-ccchhhcCEEEEEecCc-hhHHHHHHHHHHHHHHHhhcCCCceEEEEEeCCChH
Confidence 578999999885321111 12467899999998664 445555555554444321113454 45788999754
No 438
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=80.53 E-value=7.5 Score=28.73 Aligned_cols=67 Identities=22% Similarity=0.202 Sum_probs=37.9
Q ss_pred cCEEEEEEeCCCCcccHHH----HHHhhh--cCCEEEEEEeCCCcccHHHHHHHHHHHHhCCCCCCCcEEEEEeCCCCCC
Q 029517 54 SNSKLVFWDLGGQPGLRSI----WEKYYE--EAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPD 127 (192)
Q Consensus 54 ~~~~~~i~D~~G~~~~~~~----~~~~~~--~~d~ii~v~D~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~ 127 (192)
+++.+.++||+|....... ...+++ ..+-+++|++++... +.+... ....+. .+ +-=++.+|.|...
T Consensus 82 ~~~D~vlIDT~Gr~~~d~~~~~el~~~~~~~~~~~~~LVlsa~~~~--~~~~~~-~~~~~~---~~-~~~lIlTKlDet~ 154 (196)
T PF00448_consen 82 KGYDLVLIDTAGRSPRDEELLEELKKLLEALNPDEVHLVLSATMGQ--EDLEQA-LAFYEA---FG-IDGLILTKLDETA 154 (196)
T ss_dssp TTSSEEEEEE-SSSSTHHHHHHHHHHHHHHHSSSEEEEEEEGGGGG--HHHHHH-HHHHHH---SS-TCEEEEESTTSSS
T ss_pred cCCCEEEEecCCcchhhHHHHHHHHHHhhhcCCccceEEEecccCh--HHHHHH-HHHhhc---cc-CceEEEEeecCCC
Confidence 3578999999997654332 222222 467899999987553 232222 222222 11 2346699999754
No 439
>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain. Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.
Probab=80.30 E-value=11 Score=23.19 Aligned_cols=64 Identities=19% Similarity=0.089 Sum_probs=37.7
Q ss_pred EEEEEeCCCCcccHHH-HHHhhhcCCEEEEEEeCCCcccHHHHHHHHHHHHhCCCCCCCcEEEEEe
Q 029517 57 KLVFWDLGGQPGLRSI-WEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILAN 121 (192)
Q Consensus 57 ~~~i~D~~G~~~~~~~-~~~~~~~~d~ii~v~D~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~n 121 (192)
.+.++|+++....... .......+|.++++++... .+....................+..++.|
T Consensus 35 d~iivD~~~~~~~~~~~~~~~~~~~~~vi~v~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~vv~N 99 (99)
T cd01983 35 DYVLIDTPPGLGLLVLLCLLALLAADLVIIVTTPEA-LAVLGARRLTEVVLELAIEGLRPVGVVVN 99 (99)
T ss_pred CEEEEeCCCCccchhhhhhhhhhhCCEEEEecCCch-hhHHHHHHHHHHHHHhhccCCceEEEEeC
Confidence 7899999997643321 1345678999999998863 33444444433233322223456666554
No 440
>cd02035 ArsA ArsA ATPase functionas as an efflux pump located on the inner membrane of the cell. This ATP-driven oxyanion pump catalyzes the extrusion of arsenite, antimonite and arsenate. Maintenance of a low intracellular concentration of oxyanion produces resistance to the toxic agents. The pump is composed of two subunits, the catalytic ArsA subunit and the membrane subunit ArsB, which are encoded by arsA and arsB genes respectively. Arsenic efflux in bacteria is catalyzed by either ArsB alone or by ArsAB complex. The ATP-coupled pump, however, is more efficient. ArsA is composed of two homologous halves, A1 and A2, connected by a short linker sequence.
Probab=79.71 E-value=9.7 Score=28.43 Aligned_cols=68 Identities=6% Similarity=-0.008 Sum_probs=44.7
Q ss_pred CEEEEEEeCCCCcccH-HHHHHhhhc--CCEEEEEEeCCCcccHHHHHHHHHHHHhCCCCCCCcEEEEEeCCCCC
Q 029517 55 NSKLVFWDLGGQPGLR-SIWEKYYEE--AHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLP 126 (192)
Q Consensus 55 ~~~~~i~D~~G~~~~~-~~~~~~~~~--~d~ii~v~D~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~ 126 (192)
.+.+.|+|+|...... ......+.. ++.+++|..+. ..+...+...+..+.... -...-+|.|+....
T Consensus 113 ~yD~IIiD~pp~~~~~~~l~~~~l~~~~~~~vllV~~p~-~~s~~~~~~~l~~l~~~~---~~~~glVlN~~~~~ 183 (217)
T cd02035 113 LYDVIVFDTAPTGHTLRLLVRELLTDPERTSFRLVTLPE-KLPLYETERAITELALYG---IPVDAVVVNRVLPA 183 (217)
T ss_pred CCCEEEECCCCchHHHHHHHHHHccCCCceEEEEEeCCC-ccHHHHHHHHHHHHHHCC---CCCCEEEEeCCcCc
Confidence 3889999999864322 222333333 58899999886 556777777777766552 23456888998754
No 441
>PF10087 DUF2325: Uncharacterized protein conserved in bacteria (DUF2325); InterPro: IPR016772 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=78.86 E-value=9.2 Score=24.60 Aligned_cols=44 Identities=18% Similarity=0.188 Sum_probs=30.2
Q ss_pred cHHHHHHhhhcCCEEEEEEeCCCcccHHHHHHHHHHHHhCCCCCCCcEEEE
Q 029517 69 LRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLIL 119 (192)
Q Consensus 69 ~~~~~~~~~~~~d~ii~v~D~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv 119 (192)
.....+.-++.+|++|++.|..+......+++. .+. .++|++.+
T Consensus 38 ~~~~l~~~i~~aD~VIv~t~~vsH~~~~~vk~~----akk---~~ip~~~~ 81 (97)
T PF10087_consen 38 KASRLPSKIKKADLVIVFTDYVSHNAMWKVKKA----AKK---YGIPIIYS 81 (97)
T ss_pred chhHHHHhcCCCCEEEEEeCCcChHHHHHHHHH----HHH---cCCcEEEE
Confidence 333467778899999999998877655554443 222 47888765
No 442
>COG3523 IcmF Type VI protein secretion system component VasK [Intracellular trafficking, secretion, and vesicular transport]
Probab=77.56 E-value=30 Score=32.90 Aligned_cols=70 Identities=14% Similarity=0.244 Sum_probs=42.7
Q ss_pred EEEEEeCCCCc--------ccHHHHHHhh---------hcCCEEEEEEeCCCccc--H-------HHHHHHHHHHHhCCC
Q 029517 57 KLVFWDLGGQP--------GLRSIWEKYY---------EEAHAVVFVIDAACPSR--F-------EDSKTALEKVLRNED 110 (192)
Q Consensus 57 ~~~i~D~~G~~--------~~~~~~~~~~---------~~~d~ii~v~D~~~~~s--~-------~~~~~~~~~i~~~~~ 110 (192)
...++||+|.. .-...|..++ +..||||+.+|+.+.-+ . ..++.-+.++.+...
T Consensus 175 eaVlIDtaGry~~q~s~~~~~~~~W~~fL~lLkk~R~~~piNGiiltlsv~~L~~~~~~~~~~~~~~LR~RL~El~~tL~ 254 (1188)
T COG3523 175 EAVLIDTAGRYITQDSADEVDRAEWLGFLGLLKKYRRRRPLNGIILTLSVSDLLTADPAEREALARTLRARLQELRETLH 254 (1188)
T ss_pred ceEEEcCCcceecccCcchhhHHHHHHHHHHHHHhccCCCCceEEEEEEHHHHcCCCHHHHHHHHHHHHHHHHHHHHhhc
Confidence 56789999932 2344565442 35799999998753211 1 112333344433221
Q ss_pred CCCCcEEEEEeCCCCCC
Q 029517 111 LQGAPLLILANKQDLPD 127 (192)
Q Consensus 111 ~~~~piiiv~nK~Dl~~ 127 (192)
...|+.+++||.|+..
T Consensus 255 -~~~PVYl~lTk~Dll~ 270 (1188)
T COG3523 255 -ARLPVYLVLTKADLLP 270 (1188)
T ss_pred -cCCceEEEEecccccc
Confidence 3689999999999865
No 443
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=77.51 E-value=10 Score=31.61 Aligned_cols=40 Identities=15% Similarity=0.199 Sum_probs=26.8
Q ss_pred cCEEEEEEeCCCCcccHHHH-HH-----hhhcCCEEEEEEeCCCcc
Q 029517 54 SNSKLVFWDLGGQPGLRSIW-EK-----YYEEAHAVVFVIDAACPS 93 (192)
Q Consensus 54 ~~~~~~i~D~~G~~~~~~~~-~~-----~~~~~d~ii~v~D~~~~~ 93 (192)
..+.+.|+||+|.-...... .. -.-+.|=+++|+|+.-.+
T Consensus 181 ~~~DvvIvDTAGRl~ide~Lm~El~~Ik~~~~P~E~llVvDam~GQ 226 (451)
T COG0541 181 EGYDVVIVDTAGRLHIDEELMDELKEIKEVINPDETLLVVDAMIGQ 226 (451)
T ss_pred cCCCEEEEeCCCcccccHHHHHHHHHHHhhcCCCeEEEEEecccch
Confidence 45689999999964332221 11 123678899999997664
No 444
>KOG3929 consensus Uncharacterized conserved protein [Function unknown]
Probab=76.47 E-value=3.1 Score=32.38 Aligned_cols=57 Identities=23% Similarity=0.417 Sum_probs=32.9
Q ss_pred CCCCCcceEEEE---EEecCE--EEEEEeCCCCcccHHHHHHhhh----cCCEEEEEEeCCCcccH
Q 029517 39 RIVPTVGLNIGR---IEVSNS--KLVFWDLGGQPGLRSIWEKYYE----EAHAVVFVIDAACPSRF 95 (192)
Q Consensus 39 ~~~~T~g~~~~~---~~~~~~--~~~i~D~~G~~~~~~~~~~~~~----~~d~ii~v~D~~~~~s~ 95 (192)
...||...+|.. ..+... -.++|+.+|......+..--+. ..=.+|+|.|.++++.+
T Consensus 70 ~~~ptlaLEYtygRR~~g~~~kdiaN~WELGgg~~~~~LLsVPit~~~l~~~slIL~LDls~p~~~ 135 (363)
T KOG3929|consen 70 PKPPTLALEYTYGRRAKGHNPKDIANFWELGGGTSLLDLLSVPITGDTLRTFSLILVLDLSKPNDL 135 (363)
T ss_pred CCCCceeeeeehhhhccCCCchhHHHHHHhcCCccHHHHhcCcccccchhhhhheeeeecCChHHH
Confidence 346666666553 333323 3789999997655443322221 12346888999887543
No 445
>PRK11537 putative GTP-binding protein YjiA; Provisional
Probab=75.98 E-value=14 Score=29.56 Aligned_cols=87 Identities=17% Similarity=0.161 Sum_probs=48.1
Q ss_pred EEEEEEeCCCCcccHHHHHHhhh--------cCCEEEEEEeCCCcccHHH-HHHHHHHHHhCCCCCCCcEEEEEeCCCCC
Q 029517 56 SKLVFWDLGGQPGLRSIWEKYYE--------EAHAVVFVIDAACPSRFED-SKTALEKVLRNEDLQGAPLLILANKQDLP 126 (192)
Q Consensus 56 ~~~~i~D~~G~~~~~~~~~~~~~--------~~d~ii~v~D~~~~~s~~~-~~~~~~~i~~~~~~~~~piiiv~nK~Dl~ 126 (192)
....++++.|...-......++. ..++++.|+|+........ ......++. . -=++++||+|+.
T Consensus 91 ~d~IvIEttG~a~p~~i~~~~~~~~~l~~~~~l~~vvtvvDa~~~~~~~~~~~~~~~Qi~-~------AD~IvlnK~Dl~ 163 (318)
T PRK11537 91 FDRLVIECTGMADPGPIIQTFFSHEVLCQRYLLDGVIALVDAVHADEQMNQFTIAQSQVG-Y------ADRILLTKTDVA 163 (318)
T ss_pred CCEEEEECCCccCHHHHHHHHhcChhhcccEEeccEEEEEEhhhhhhhccccHHHHHHHH-h------CCEEEEeccccC
Confidence 56788999998765555444322 2588999999975322111 111112222 1 235789999987
Q ss_pred CCCCHHHHHhHcCccccCCcceEEEEee
Q 029517 127 DAVSADELARYLDLKKLDERVCMFEAVS 154 (192)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~~~~~~S 154 (192)
.. .+.+.+.+.. + +...+++.++
T Consensus 164 ~~--~~~~~~~l~~--l-np~a~i~~~~ 186 (318)
T PRK11537 164 GE--AEKLRERLAR--I-NARAPVYTVV 186 (318)
T ss_pred CH--HHHHHHHHHH--h-CCCCEEEEec
Confidence 63 2445555431 1 2345555443
No 446
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=75.69 E-value=15 Score=31.68 Aligned_cols=91 Identities=16% Similarity=0.198 Sum_probs=49.2
Q ss_pred CEEEEEEeCCCCcccHHHHH---Hhhh--cCCEEEEEEeCCCcccHHHHHHHHHHHHhCCCCCCCcEEEEEeCCCCCCCC
Q 029517 55 NSKLVFWDLGGQPGLRSIWE---KYYE--EAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAV 129 (192)
Q Consensus 55 ~~~~~i~D~~G~~~~~~~~~---~~~~--~~d~ii~v~D~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~~~ 129 (192)
...+.|+||+|......... ..+. .....++|++.+. +...+...+..+... .+.-+|+||.|....
T Consensus 428 ~~DLVLIDTaG~s~~D~~l~eeL~~L~aa~~~a~lLVLpAts--s~~Dl~eii~~f~~~-----~~~gvILTKlDEt~~- 499 (559)
T PRK12727 428 DYKLVLIDTAGMGQRDRALAAQLNWLRAARQVTSLLVLPANA--HFSDLDEVVRRFAHA-----KPQGVVLTKLDETGR- 499 (559)
T ss_pred cCCEEEecCCCcchhhHHHHHHHHHHHHhhcCCcEEEEECCC--ChhHHHHHHHHHHhh-----CCeEEEEecCcCccc-
Confidence 57899999999653322111 0111 1234677777764 244444444444322 467789999997543
Q ss_pred CHHHHHhHcCccccCCcceEEEEeeecCCCCH
Q 029517 130 SADELARYLDLKKLDERVCMFEAVSGYDGFGI 161 (192)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi 161 (192)
.-.+.+.+. ..+.++..+ .+|++|
T Consensus 500 -lG~aLsv~~-----~~~LPI~yv--t~GQ~V 523 (559)
T PRK12727 500 -FGSALSVVV-----DHQMPITWV--TDGQRV 523 (559)
T ss_pred -hhHHHHHHH-----HhCCCEEEE--eCCCCc
Confidence 234444443 233444333 346777
No 447
>KOG1534 consensus Putative transcription factor FET5 [Transcription]
Probab=73.92 E-value=13 Score=28.23 Aligned_cols=114 Identities=18% Similarity=0.266 Sum_probs=64.0
Q ss_pred EEEEEeCCCCcc-c--HHH---HHHhhhc---CCEEEEEEeCCCcccHHHHHHHHHHHHhC---CCCCCCcEEEEEeCCC
Q 029517 57 KLVFWDLGGQPG-L--RSI---WEKYYEE---AHAVVFVIDAACPSRFEDSKTALEKVLRN---EDLQGAPLLILANKQD 124 (192)
Q Consensus 57 ~~~i~D~~G~~~-~--~~~---~~~~~~~---~d~ii~v~D~~~~~s~~~~~~~~~~i~~~---~~~~~~piiiv~nK~D 124 (192)
..-++|+|||-. | .+. .-.+++. --|+++++|+.= .-...+++...+.. .-.-..|-|-|++|+|
T Consensus 99 dylifDcPGQIELytH~pVm~~iv~hl~~~~F~~c~Vylldsqf---~vD~~KfiSG~lsAlsAMi~lE~P~INvlsKMD 175 (273)
T KOG1534|consen 99 DYLIFDCPGQIELYTHLPVMPQIVEHLKQWNFNVCVVYLLDSQF---LVDSTKFISGCLSALSAMISLEVPHINVLSKMD 175 (273)
T ss_pred CEEEEeCCCeeEEeecChhHHHHHHHHhcccCceeEEEEeccch---hhhHHHHHHHHHHHHHHHHHhcCcchhhhhHHH
Confidence 578999999743 2 111 2222222 245677777531 11112222222111 0113789999999999
Q ss_pred CCCCCCHHHHHhHcCcc--------------------------cc-CCcceEEEEeeecCCCCHHHHHHHHHHHHH
Q 029517 125 LPDAVSADELARYLDLK--------------------------KL-DERVCMFEAVSGYDGFGIKESVEWLVEVME 173 (192)
Q Consensus 125 l~~~~~~~~~~~~~~~~--------------------------~~-~~~~~~~~~~Sa~~~~gi~e~~~~i~~~i~ 173 (192)
|......+++.+++.-. .+ ...-..|++....+.+.|+.++..|..+++
T Consensus 176 Llk~~~k~~l~~Fl~~d~~~l~~~~~~~~~s~Kf~~L~~~i~~~v~d~~Mv~FlPl~~~~eeSi~~iL~~ID~aiQ 251 (273)
T KOG1534|consen 176 LLKDKNKKELERFLNPDEYLLLEDSEINLRSPKFKKLTKCIAQLVDDYSMVNFLPLDSSDEESINIILSYIDDAIQ 251 (273)
T ss_pred HhhhhhHHHHHHhcCCchhhhhcccccccccHHHHHHHHHHHHHhccccceeeeecCCCCHHHHHHHHHHHHHHHH
Confidence 97765666666655410 00 112356777777777778888877776665
No 448
>TIGR02475 CobW cobalamin biosynthesis protein CobW. A broader CobW family is delineated by two PFAM models which identify the N- and C-terminal domains (pfam02492 and pfam07683).
Probab=73.86 E-value=13 Score=30.15 Aligned_cols=37 Identities=14% Similarity=0.267 Sum_probs=26.5
Q ss_pred CEEEEEEeCCCCcccHHHHHHhh----h---cCCEEEEEEeCCC
Q 029517 55 NSKLVFWDLGGQPGLRSIWEKYY----E---EAHAVVFVIDAAC 91 (192)
Q Consensus 55 ~~~~~i~D~~G~~~~~~~~~~~~----~---~~d~ii~v~D~~~ 91 (192)
.....++++.|..........+. . ..|++|.|+|+..
T Consensus 92 ~~d~IvIEtsG~a~P~~i~~~~~~~~l~~~~~l~~vvtvVDa~~ 135 (341)
T TIGR02475 92 RPDHILIETSGLALPKPLVQAFQWPEIRSRVTVDGVVTVVDGPA 135 (341)
T ss_pred CCCEEEEeCCCCCCHHHHHHHhcCccccceEEeeeEEEEEECch
Confidence 46788999999876655554431 1 4688999999874
No 449
>PF01268 FTHFS: Formate--tetrahydrofolate ligase; InterPro: IPR000559 Formate--tetrahydrofolate ligase (6.3.4.3 from EC) (formyltetrahydrofolate synthetase) (FTHFS) is one of the enzymes participating in the transfer of one-carbon units, an essential element of various biosynthetic pathways. In many of these processes the transfers of one-carbon units are mediated by the coenzyme tetrahydrofolate (THF). In eukaryotes the FTHFS activity is expressed by a multifunctional enzyme, C-1-tetrahydrofolate synthase (C1-THF synthase), which also catalyses the dehydrogenase and cyclohydrolase activities. Two forms of C1-THF synthases are known [], one is located in the mitochondrial matrix, while the second one is cytoplasmic. In both forms the FTHFS domain consists of about 600 amino acid residues and is located in the C-terminal section of C1-THF synthase. In prokaryotes FTHFS activity is expressed by a monofunctional homotetrameric enzyme of about 560 amino acid residues []. The crystal structure of N(10)-formyltetrahydrofolate synthetase from Moorella thermoacetica shows that the subunit is composed of three domains organised around three mixed beta-sheets. There are two cavities between adjacent domains. One of them was identified as the nucleotide binding site by homology modelling. The large domain contains a seven-stranded beta-sheet surrounded by helices on both sides. The second domain contains a five-stranded beta-sheet with two alpha-helices packed on one side while the other two are a wall of the active site cavity. The third domain contains a four-stranded beta-sheet forming a half-barrel. The concave side is covered by two helices while the convex side is another wall of the large cavity. Arg 97 is likely involved in formyl phosphate binding. The tetrameric molecule is relatively flat with the shape of the letter X, and the active sites are located at the end of the subunits far from the subunit interface [].; GO: 0004329 formate-tetrahydrofolate ligase activity, 0005524 ATP binding, 0009396 folic acid-containing compound biosynthetic process; PDB: 2EO2_A 3DO6_B 1FPM_A 3RBO_A 3PZX_B 3QB6_A 1FP7_A 3SIN_B 1EG7_A 3QUS_A ....
Probab=73.73 E-value=7.4 Score=33.46 Aligned_cols=85 Identities=19% Similarity=0.215 Sum_probs=49.8
Q ss_pred cCCEEEEEEeC-------------CCcccHHHHHH-------HHHHHHhCCCCCCCcEEEEEeCCCCCCCCCHHHHHhHc
Q 029517 79 EAHAVVFVIDA-------------ACPSRFEDSKT-------ALEKVLRNEDLQGAPLLILANKQDLPDAVSADELARYL 138 (192)
Q Consensus 79 ~~d~ii~v~D~-------------~~~~s~~~~~~-------~~~~i~~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~ 138 (192)
..|++++|.-+ -..+..+.+.. -++.+.. .+.|+++.+|+.--....+.+.+.+++
T Consensus 321 ~P~~~VlVaTvRALK~HGG~~~~~l~~eNl~al~~G~~NL~rHIeNik~----fGvpvVVAIN~F~tDT~aEi~~I~~~~ 396 (557)
T PF01268_consen 321 KPDAVVLVATVRALKMHGGVAKDDLNEENLEALEKGFANLERHIENIKK----FGVPVVVAINRFPTDTDAEIELIRELC 396 (557)
T ss_dssp --SEEEEEEEHHHHHHHTT--GGGTTS--HHHHHHHHHHHHHHHHHHHC----TT--EEEEEE--TTS-HHHHHHHHHHC
T ss_pred CcceEEEeeechHHHhhcCCCccccCccCHHHHHHHHHHHHHHHHHHHh----cCCCeEEEecCCCCCCHHHHHHHHHHH
Confidence 47899999843 12233333333 3333333 479999999999655444556677777
Q ss_pred CccccCCcceEEEEeee--cCCCCHHHHHHHHHHHH
Q 029517 139 DLKKLDERVCMFEAVSG--YDGFGIKESVEWLVEVM 172 (192)
Q Consensus 139 ~~~~~~~~~~~~~~~Sa--~~~~gi~e~~~~i~~~i 172 (192)
. ..+.++..+.. +-|.|-.++-+.+++.+
T Consensus 397 ~-----~~Gv~~avs~~wa~GGeGa~eLA~~Vv~a~ 427 (557)
T PF01268_consen 397 E-----ELGVRAAVSEHWAKGGEGAVELAEAVVEAC 427 (557)
T ss_dssp C-----CCCEEEEEC-HHHHGGGGCHHHHHHHHHH-
T ss_pred H-----hCCCCEEEechhhcccccHHHHHHHHHHHh
Confidence 7 66888655554 44889999999999888
No 450
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=73.23 E-value=17 Score=32.75 Aligned_cols=68 Identities=18% Similarity=0.104 Sum_probs=46.5
Q ss_pred cCEEEEEEeCCCCcccHHHHHHhhhcCCEEEEEEeCCCcccHHHHHHHHHHHHhCCCCCCCcEEEEEeCCCCC
Q 029517 54 SNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLP 126 (192)
Q Consensus 54 ~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ii~v~D~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~ 126 (192)
..+.+.|+|+|+....... ......+|++|+|+.. +..+...+...++.+... .....-+|.|+.|..
T Consensus 654 ~~yD~IiID~pp~~~~~d~-~~l~~~~D~vl~v~~~-~~~~~~~~~~~~~~l~~~---~~~~~GvvlN~~~~~ 721 (754)
T TIGR01005 654 LYSDCVVVDVGTADPVRDM-RAAARLAIIMLLVTAY-DRVVVECGRADAQGISRL---NGEVTGVFLNMLDPN 721 (754)
T ss_pred hhCCEEEEcCCCcchhHHH-HHhhhhCCeEEEEEEe-CceeHHHHHHHHHHHHhc---CCceEEEEecCCChh
Confidence 3578999999998643222 2334569999999875 455677777777776644 223456899999854
No 451
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=73.05 E-value=20 Score=28.03 Aligned_cols=66 Identities=14% Similarity=0.031 Sum_probs=39.7
Q ss_pred CEEEEEEeCCCCcccHH----HHHHhhh--cCCEEEEEEeCCCcccHHHHHHHHHHHHhCCCCCCCcEEEEEeCCCCCC
Q 029517 55 NSKLVFWDLGGQPGLRS----IWEKYYE--EAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPD 127 (192)
Q Consensus 55 ~~~~~i~D~~G~~~~~~----~~~~~~~--~~d~ii~v~D~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~ 127 (192)
++.+.++||+|...... .+..+++ ..+-+++|+|++.. .+.+..++..+... .+-=++.||.|...
T Consensus 154 ~~D~ViIDt~Gr~~~~~~~l~el~~~~~~~~~~~~~LVl~a~~~--~~d~~~~~~~f~~~-----~~~~~I~TKlDet~ 225 (270)
T PRK06731 154 RVDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASMK--SKDMIEIITNFKDI-----HIDGIVFTKFDETA 225 (270)
T ss_pred CCCEEEEECCCCCcCCHHHHHHHHHHHhhhCCCeEEEEEcCccC--HHHHHHHHHHhCCC-----CCCEEEEEeecCCC
Confidence 57899999999763211 2223332 35668999998643 23444444444321 23456789999765
No 452
>TIGR00381 cdhD CO dehydrogenase/acetyl-CoA synthase, delta subunit. This is the small subunit of a heterodimer which catalyzes the reaction CO + H2O + Acceptor = CO2 + Reduced acceptor and is involved in the synthesis of acetyl-CoA from CO2 and H2.
Probab=71.96 E-value=55 Score=27.01 Aligned_cols=40 Identities=23% Similarity=0.312 Sum_probs=29.4
Q ss_pred cCCEEEEEEeCCCcc----cHHHHHHHHHHHHhCCCCCCCcEEEEEe
Q 029517 79 EAHAVVFVIDAACPS----RFEDSKTALEKVLRNEDLQGAPLLILAN 121 (192)
Q Consensus 79 ~~d~ii~v~D~~~~~----s~~~~~~~~~~i~~~~~~~~~piiiv~n 121 (192)
++|.+.+...+++++ +.++....++.+.+. .+.|+++.++
T Consensus 153 ~aD~Ialr~~S~DP~~~d~~~~e~a~~vk~V~~a---v~vPLIL~gs 196 (389)
T TIGR00381 153 GADMVTIHLISTDPKLDDKSPSEAAKVLEDVLQA---VDVPIVIGGS 196 (389)
T ss_pred CCCEEEEEecCCCccccccCHHHHHHHHHHHHHh---CCCCEEEeCC
Confidence 689999999888876 334455556666555 5899999876
No 453
>PRK10037 cell division protein; Provisional
Probab=70.18 E-value=32 Score=26.21 Aligned_cols=60 Identities=10% Similarity=0.091 Sum_probs=38.6
Q ss_pred cCEEEEEEeCCCCcccHHHHHHhhhcCCEEEEEEeCCCcccHHHHHHHHHHHHhCCCCCCCcEEEEEeCCCC
Q 029517 54 SNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDL 125 (192)
Q Consensus 54 ~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ii~v~D~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl 125 (192)
..+.+.|+|+|+... ......+..||.+|+++.+.. +.. ++..... .+..+.++.|+.+.
T Consensus 116 ~~yD~iiIDtpp~~~--~~~~~al~aaD~vlvpv~~~~---~~~----i~~~~~~---~~~~~~i~~n~~~~ 175 (250)
T PRK10037 116 GRYQWILLDLPRGAS--PLTRQLLSLCDHSLAIVNVDA---NCH----IRLHQQA---LPAGAHILINDLRI 175 (250)
T ss_pred CCCCEEEEECCCCcc--HHHHHHHHhCCEEEEEcCcCH---HHH----Hhhhccc---cCCCeEEEEecCCc
Confidence 467899999999853 345567788999999997642 322 2222221 12345566788863
No 454
>PRK13705 plasmid-partitioning protein SopA; Provisional
Probab=70.08 E-value=14 Score=30.54 Aligned_cols=70 Identities=16% Similarity=0.118 Sum_probs=41.7
Q ss_pred CEEEEEEeCCCCcccHHHHHHhhhcCCEEEEEEeCCCcccHHHHHHHH---HHHHhCCCC--CCCcEEEEEeCCCCCC
Q 029517 55 NSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTAL---EKVLRNEDL--QGAPLLILANKQDLPD 127 (192)
Q Consensus 55 ~~~~~i~D~~G~~~~~~~~~~~~~~~d~ii~v~D~~~~~s~~~~~~~~---~~i~~~~~~--~~~piiiv~nK~Dl~~ 127 (192)
.+.+.|+|+|+... ......+..||.+|+.+.+. ..++..+...+ ..+...... .+..+-++.|+.|...
T Consensus 234 ~YD~IiIDtpP~l~--~~t~nal~AaD~viiP~~~~-~~s~~g~~~~~~~i~~~~~~~~~~~~~~~l~il~t~~~~~~ 308 (388)
T PRK13705 234 DYDVIVIDSAPNLG--IGTINVVCAADVLIVPTPAE-LFDYTSALQFFDMLRDLLKNVDLKGFEPDVRILLTKYSNSN 308 (388)
T ss_pred cCCEEEEECCCchh--HHHHHHHHHcCEEEEecCCc-HHHHHHHHHHHHHHHHHHHHHhhccCCCCeEEEEEEecCCC
Confidence 57899999999854 33445566899999998764 33454444333 333221000 1223446889988653
No 455
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=70.00 E-value=36 Score=28.47 Aligned_cols=94 Identities=17% Similarity=0.186 Sum_probs=51.3
Q ss_pred CEEEEEEeCCCCcccH----HHHHHhhh---cCCEEEEEEeCCCcccHHHHHHHHHHHHhCCCCCCCcEEEEEeCCCCCC
Q 029517 55 NSKLVFWDLGGQPGLR----SIWEKYYE---EAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPD 127 (192)
Q Consensus 55 ~~~~~i~D~~G~~~~~----~~~~~~~~---~~d~ii~v~D~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~ 127 (192)
.+.+.++||+|..... .....++. ...-..+|++++.. ...+...+..+... + +--++.||.|-..
T Consensus 299 ~~DlVlIDt~G~~~~d~~~~~~L~~ll~~~~~~~~~~LVl~a~~~--~~~l~~~~~~f~~~----~-~~~vI~TKlDet~ 371 (424)
T PRK05703 299 DCDVILIDTAGRSQRDKRLIEELKALIEFSGEPIDVYLVLSATTK--YEDLKDIYKHFSRL----P-LDGLIFTKLDETS 371 (424)
T ss_pred CCCEEEEeCCCCCCCCHHHHHHHHHHHhccCCCCeEEEEEECCCC--HHHHHHHHHHhCCC----C-CCEEEEecccccc
Confidence 5689999999975332 22333444 23466788888643 33434443333221 1 2357899999754
Q ss_pred CCCHHHHHhHcCccccCCcceEEEEeeecCCCCH-HHH
Q 029517 128 AVSADELARYLDLKKLDERVCMFEAVSGYDGFGI-KES 164 (192)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi-~e~ 164 (192)
.. -.+.+.+. ..+.++..+ .+|++| +++
T Consensus 372 ~~--G~i~~~~~-----~~~lPv~yi--t~Gq~VpdDl 400 (424)
T PRK05703 372 SL--GSILSLLI-----ESGLPISYL--TNGQRVPDDI 400 (424)
T ss_pred cc--cHHHHHHH-----HHCCCEEEE--eCCCCChhhh
Confidence 32 24444443 334444333 357776 444
No 456
>KOG2485 consensus Conserved ATP/GTP binding protein [General function prediction only]
Probab=69.89 E-value=5.5 Score=31.75 Aligned_cols=50 Identities=14% Similarity=0.106 Sum_probs=27.5
Q ss_pred hhhccccHHHHHHHHhhhh--ccCCCCCCCCCCCCcceEEEE-EEe-cCEEEEEEeCCCC
Q 029517 11 YIFTKTEFHTLLEKLKSVY--SNVEGLPPDRIVPTVGLNIGR-IEV-SNSKLVFWDLGGQ 66 (192)
Q Consensus 11 ~~~kst~~~~l~~~~~~~~--~~~~~~~~~~~~~T~g~~~~~-~~~-~~~~~~i~D~~G~ 66 (192)
.+.||+++|++.+...... ..+.+++.. |. .+.. +.. ....+.+.||||-
T Consensus 153 NVGKSsLINa~r~~~Lrk~k~a~vG~~pGV----T~--~V~~~iri~~rp~vy~iDTPGi 206 (335)
T KOG2485|consen 153 NVGKSSLINALRNVHLRKKKAARVGAEPGV----TR--RVSERIRISHRPPVYLIDTPGI 206 (335)
T ss_pred CCChHHHHHHHHHHHhhhccceeccCCCCc----ee--eehhheEeccCCceEEecCCCc
Confidence 5789999998876544432 223222211 11 1221 222 2346999999993
No 457
>cd02040 NifH NifH gene encodes component II (iron protein) of nitrogenase. Nitrogenase is responsible for the biological nitrogen fixation, i.e. reduction of molecular nitrogen to ammonia. NifH consists of two oxygen-sensitive metallosulfur proteins: the mollybdenum-iron (alternatively, vanadium-iron or iron-iron) protein (commonly referred to as component 1), and the iron protein (commonly referred to as component 2). The iron protein is a homodimer, with an Fe4S4 cluster bound between the subunits and two ATP-binding domains. It supplies energy by ATP hydrolysis, and transfers electrons from reduced ferredoxin or flavodoxin to component 1 for the reduction of molecular nitrogen to ammonia.
Probab=69.71 E-value=12 Score=28.74 Aligned_cols=68 Identities=13% Similarity=0.159 Sum_probs=38.9
Q ss_pred CEEEEEEeCCCCcccHHHH-HHhhhcCCEEEEEEeCCCcccHHHHHHHHHHHHhCCCCCCCcEE-EEEeCC
Q 029517 55 NSKLVFWDLGGQPGLRSIW-EKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLL-ILANKQ 123 (192)
Q Consensus 55 ~~~~~i~D~~G~~~~~~~~-~~~~~~~d~ii~v~D~~~~~s~~~~~~~~~~i~~~~~~~~~pii-iv~nK~ 123 (192)
.+.+.|+|++|........ ......+|.+|+++.++ +.++..+...++.+.......+.++. ++.|+.
T Consensus 116 ~yD~viID~~g~~~~~~~~~~~~~~aaD~vlip~~p~-~~sl~~~~~l~~~i~~~~~~~~~~l~gVv~n~~ 185 (270)
T cd02040 116 DLDFVIYDVLGDVVCGGFAMPIREGKAQEIYIVTSGE-MMALYAANNICKGILKYAKSGGVRLGGLICNSR 185 (270)
T ss_pred CCCEEEEecccCcccCCcccccccccccEEEEEecCc-hHHHHHHHHHHHHHHHhCccCCCceEEEEEecC
Confidence 5789999998864221111 11223599999999885 44565555555544443222345554 445654
No 458
>PRK13869 plasmid-partitioning protein RepA; Provisional
Probab=68.75 E-value=34 Score=28.42 Aligned_cols=70 Identities=14% Similarity=0.044 Sum_probs=43.2
Q ss_pred CEEEEEEeCCCCcccHHHHHHhhhcCCEEEEEEeCCCcccHHHHHHHHH-------HHHhCCCCCCCcE-EEEEeCCCCC
Q 029517 55 NSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALE-------KVLRNEDLQGAPL-LILANKQDLP 126 (192)
Q Consensus 55 ~~~~~i~D~~G~~~~~~~~~~~~~~~d~ii~v~D~~~~~s~~~~~~~~~-------~i~~~~~~~~~pi-iiv~nK~Dl~ 126 (192)
.+.+.|+|||+...+ .....+..+|.+|+.+.++ ..++..+...+. .+.......+..+ -++.|+.|..
T Consensus 251 ~yD~IiIDtpP~l~~--~t~~al~aAd~viiPv~p~-~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~~~~il~t~~~~~ 327 (405)
T PRK13869 251 DYDVVVIDCPPQLGF--LTLSGLCAATSMVITVHPQ-MLDIASMSQFLLMTRDLLGVVKEAGGNLQYDFIRYLLTRYEPQ 327 (405)
T ss_pred cCCEEEEECCCchhH--HHHHHHHHcCEEEEecCCc-HHHHHHHHHHHHHHHHHHHHHHHhCCCCCcceeEEEEEeECCC
Confidence 578999999998644 4445667899999999764 334544444442 2222211122233 3789999864
Q ss_pred C
Q 029517 127 D 127 (192)
Q Consensus 127 ~ 127 (192)
.
T Consensus 328 ~ 328 (405)
T PRK13869 328 D 328 (405)
T ss_pred C
Confidence 3
No 459
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=68.67 E-value=5.1 Score=28.69 Aligned_cols=23 Identities=30% Similarity=0.160 Sum_probs=12.5
Q ss_pred ceEEEEeeecCCCCHHHHHHHHH
Q 029517 147 VCMFEAVSGYDGFGIKESVEWLV 169 (192)
Q Consensus 147 ~~~~~~~Sa~~~~gi~e~~~~i~ 169 (192)
+++++.+|++++.|++++.+++.
T Consensus 12 gy~v~~~S~~~~~g~~~l~~~l~ 34 (161)
T PF03193_consen 12 GYPVFFISAKTGEGIEELKELLK 34 (161)
T ss_dssp TSEEEE-BTTTTTTHHHHHHHHT
T ss_pred CCcEEEEeCCCCcCHHHHHHHhc
Confidence 45566666666666666555443
No 460
>KOG1249 consensus Predicted GTPases [General function prediction only]
Probab=68.56 E-value=9.4 Score=32.69 Aligned_cols=91 Identities=18% Similarity=0.163 Sum_probs=51.6
Q ss_pred HhhhcCCEEEEEEeCCCcccHHHHHHHHHHHHhCCCCCCCcEEEEEeCCCCCCCCCHHHHHhHcCcc---------ccCC
Q 029517 75 KYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAVSADELARYLDLK---------KLDE 145 (192)
Q Consensus 75 ~~~~~~d~ii~v~D~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~---------~~~~ 145 (192)
...++--++..|+|.++... .+...+.... ....+++.+||.|+........+.+.+... ..+.
T Consensus 106 ~~~~~~~~~~~vvd~~d~p~--~i~p~~~~~v-----~~~~~~v~~n~vdl~p~d~~~~~c~rc~~l~~~~~vk~~~~en 178 (572)
T KOG1249|consen 106 EKQENPALARKVVDLSDEPC--SIDPLLTNDV-----GSPRLFVDGNKVDLLPKDSRPGYCQRCHSLLHYGMIKAGGGEN 178 (572)
T ss_pred hhhhcccceEEeeecccCcc--ccccchhhcc-----cCCceEeeccccccccccccchHHHHHHhhcccceeecccccC
Confidence 33455566778888876532 3223333222 123379999999997643322222222200 0011
Q ss_pred c-----ceEEEEeeecCCCCHHHHHHHHHHHH
Q 029517 146 R-----VCMFEAVSGYDGFGIKESVEWLVEVM 172 (192)
Q Consensus 146 ~-----~~~~~~~Sa~~~~gi~e~~~~i~~~i 172 (192)
. -.....+++++|.|++++.-.+++..
T Consensus 179 ~~p~~~f~~~~~~r~ktgyg~eeLI~~lvd~~ 210 (572)
T KOG1249|consen 179 LNPDFDFDHVDLIRAKTGYGIEELIVMLVDIV 210 (572)
T ss_pred CCcccchhhhhhhhhhhcccHHHHHHHhhhee
Confidence 0 12356789999999999998887643
No 461
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=68.45 E-value=22 Score=29.27 Aligned_cols=72 Identities=10% Similarity=0.020 Sum_probs=38.0
Q ss_pred cCEEEEEEeCCCCcccHHHH---HHhhh---cCCEEEEEEeCCCcccHHHHHHHHHHHHhCCCCC----CCcEEEEEeCC
Q 029517 54 SNSKLVFWDLGGQPGLRSIW---EKYYE---EAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQ----GAPLLILANKQ 123 (192)
Q Consensus 54 ~~~~~~i~D~~G~~~~~~~~---~~~~~---~~d~ii~v~D~~~~~s~~~~~~~~~~i~~~~~~~----~~piiiv~nK~ 123 (192)
.+..+.++||+|........ ...+. .+.-.++|++++.. .+.+.+.+..+......+ .-+-=+|.||.
T Consensus 214 ~~~DlVLIDTaG~~~~d~~l~e~La~L~~~~~~~~~lLVLsAts~--~~~l~evi~~f~~~~~~p~~~~~~~~~~I~TKl 291 (374)
T PRK14722 214 RNKHMVLIDTIGMSQRDRTVSDQIAMLHGADTPVQRLLLLNATSH--GDTLNEVVQAYRSAAGQPKAALPDLAGCILTKL 291 (374)
T ss_pred cCCCEEEEcCCCCCcccHHHHHHHHHHhccCCCCeEEEEecCccC--hHHHHHHHHHHHHhhcccccccCCCCEEEEecc
Confidence 35689999999966433222 11222 23456889998754 223223333333221000 01234678999
Q ss_pred CCCC
Q 029517 124 DLPD 127 (192)
Q Consensus 124 Dl~~ 127 (192)
|-..
T Consensus 292 DEt~ 295 (374)
T PRK14722 292 DEAS 295 (374)
T ss_pred ccCC
Confidence 9765
No 462
>cd01886 EF-G Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta
Probab=67.02 E-value=6.4 Score=30.66 Aligned_cols=29 Identities=10% Similarity=0.264 Sum_probs=25.1
Q ss_pred CcceEEEEeeecCCCCHHHHHHHHHHHHH
Q 029517 145 ERVCMFEAVSGYDGFGIKESVEWLVEVME 173 (192)
Q Consensus 145 ~~~~~~~~~Sa~~~~gi~e~~~~i~~~i~ 173 (192)
..-+|++..||.++.|+..+++.+.+.+.
T Consensus 240 ~~~~PV~~gSa~~~~Gi~~lld~i~~~~p 268 (270)
T cd01886 240 NKIVPVLCGSAFKNKGVQPLLDAVVDYLP 268 (270)
T ss_pred CcEEEEEeCcCCCCcCHHHHHHHHHHhcC
Confidence 45689999999999999999999987653
No 463
>cd00477 FTHFS Formyltetrahydrofolate synthetase (FTHFS) catalyzes the ATP-dependent activation of formate ion via its addition to the N10 position of tetrahydrofolate. FTHFS is a highly expressed key enzyme in both the Wood-Ljungdahl pathway of autotrophic CO2 fixation (acetogenesis) and the glycine synthase/reductase pathways of purinolysis. The key physiological role of this enzyme in acetogens is to catalyze the formylation of tetrahydrofolate, an initial step in the reduction of carbon dioxide and other one-carbon precursors to acetate. In purinolytic organisms, the enzymatic reaction is reversed, liberating formate from 10-formyltetrahydrofolate with concurrent production of ATP.
Probab=66.26 E-value=9.3 Score=32.56 Aligned_cols=57 Identities=19% Similarity=0.223 Sum_probs=41.3
Q ss_pred CCCcEEEEEeCCCCCCCCCHHHHHhHcCccccCCcceEEEEeee--cCCCCHHHHHHHHHHHHH
Q 029517 112 QGAPLLILANKQDLPDAVSADELARYLDLKKLDERVCMFEAVSG--YDGFGIKESVEWLVEVME 173 (192)
Q Consensus 112 ~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa--~~~~gi~e~~~~i~~~i~ 173 (192)
.+.|+++.+|+..-....+.+.+.+++. ..+..+..+.. +-|.|-.++-+.+++.+.
T Consensus 355 fg~p~VVaiN~F~~Dt~~Ei~~v~~~~~-----~~g~~~~~~~~~~~GG~Ga~eLA~~Vi~a~e 413 (524)
T cd00477 355 FGVPVVVAINKFSTDTDAELALVRKLAE-----EAGAFVAVSEHWAEGGKGAVELAEAVIEACE 413 (524)
T ss_pred cCCCeEEEecCCCCCCHHHHHHHHHHHH-----HcCCCEEEehhhhhhhhhHHHHHHHHHHHhc
Confidence 3799999999997655555566777776 45566555544 457888888888887776
No 464
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=64.31 E-value=31 Score=28.61 Aligned_cols=66 Identities=17% Similarity=0.116 Sum_probs=37.0
Q ss_pred CEEEEEEeCCCCcccHH----HHHHhhh--cCCEEEEEEeCCCcccHHHHHHHHHHHHhCCCCCCCcEEEEEeCCCCCC
Q 029517 55 NSKLVFWDLGGQPGLRS----IWEKYYE--EAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPD 127 (192)
Q Consensus 55 ~~~~~i~D~~G~~~~~~----~~~~~~~--~~d~ii~v~D~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~ 127 (192)
.+.+.++||+|...... ....+.. ..+.+++|.+++ .....+...+..+.. --+--++.||.|...
T Consensus 285 ~~D~VLIDTAGr~~~d~~~l~EL~~l~~~~~p~~~~LVLsag--~~~~d~~~i~~~f~~-----l~i~glI~TKLDET~ 356 (407)
T PRK12726 285 CVDHILIDTVGRNYLAEESVSEISAYTDVVHPDLTCFTFSSG--MKSADVMTILPKLAE-----IPIDGFIITKMDETT 356 (407)
T ss_pred CCCEEEEECCCCCccCHHHHHHHHHHhhccCCceEEEECCCc--ccHHHHHHHHHhcCc-----CCCCEEEEEcccCCC
Confidence 47899999999753322 2223333 346667777663 224444444333211 124456799999765
No 465
>PRK13507 formate--tetrahydrofolate ligase; Provisional
Probab=63.44 E-value=12 Score=32.36 Aligned_cols=57 Identities=11% Similarity=0.070 Sum_probs=40.4
Q ss_pred CCCcEEEEEeCCCCCCCCCHHHHHhHcCccccCCcceEEEEeee--cCCCCHHHHHHHHHHHHH
Q 029517 112 QGAPLLILANKQDLPDAVSADELARYLDLKKLDERVCMFEAVSG--YDGFGIKESVEWLVEVME 173 (192)
Q Consensus 112 ~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa--~~~~gi~e~~~~i~~~i~ 173 (192)
.+.|+++.+|+..-....+.+.+.+++. ..+..+..+.. +-|.|-.++-+++++.+.
T Consensus 400 fg~pvVVaiN~F~~Dt~~Ei~~l~~~~~-----~~g~~~~v~~~wa~GGeGa~eLA~~Vv~a~e 458 (587)
T PRK13507 400 SGINPVVCINAFYTDTHAEIAIVRRLAE-----QAGARVAVSRHWEKGGEGALELADAVIDACN 458 (587)
T ss_pred cCCCeEEEeCCCCCCCHHHHHHHHHHHH-----HcCCCEEEechhhccchhHHHHHHHHHHHhh
Confidence 4799999999997555445566666665 44555555444 447788888888887766
No 466
>TIGR03453 partition_RepA plasmid partitioning protein RepA. Members of this family are the RepA (or ParA) protein involved in replicon partitioning. All known examples occur in bacterial species with two or more replicons, on a plasmid or the smaller chromosome. Note that an apparent exception may be seen as a pseudomolecule from assembly of an incompletely sequenced genome. Members of this family belong to a larger family that also includes the enzyme cobyrinic acid a,c-diamide synthase, but assignment of that name to members of this family would be in error.
Probab=63.03 E-value=36 Score=27.94 Aligned_cols=70 Identities=14% Similarity=0.056 Sum_probs=40.5
Q ss_pred CEEEEEEeCCCCcccHHHHHHhhhcCCEEEEEEeCCCcccHHHHHH-------HHHHHHhCCCCCCC-cEEEEEeCCCCC
Q 029517 55 NSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKT-------ALEKVLRNEDLQGA-PLLILANKQDLP 126 (192)
Q Consensus 55 ~~~~~i~D~~G~~~~~~~~~~~~~~~d~ii~v~D~~~~~s~~~~~~-------~~~~i~~~~~~~~~-piiiv~nK~Dl~ 126 (192)
.+.+.|+|||+.... .....+..||.+|+++.++.. ++..+.. .+..+.......+. .+-++.|+.|..
T Consensus 234 ~yD~IiiD~pp~~~~--~~~~al~aad~viipv~p~~~-d~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~~~~~~ 310 (387)
T TIGR03453 234 DYDVVVIDCPPQLGF--LTLSALCAATGVLITVHPQML-DVMSMSQFLLMTGDLLGVVREAGGNLSYDFMRYLVTRYEPN 310 (387)
T ss_pred cCCEEEEeCCccHhH--HHHHHHHHcCeeEEcCCCchh-hHHHHHHHHHHHHHHHHHHHHhcCCCCCceeEEEEeeECCC
Confidence 578999999998643 344566789999999876522 2332222 22222222111122 344688999864
Q ss_pred C
Q 029517 127 D 127 (192)
Q Consensus 127 ~ 127 (192)
.
T Consensus 311 ~ 311 (387)
T TIGR03453 311 D 311 (387)
T ss_pred C
Confidence 3
No 467
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=62.57 E-value=34 Score=28.62 Aligned_cols=66 Identities=12% Similarity=0.021 Sum_probs=38.6
Q ss_pred CEEEEEEeCCCCcccH----HHHHHhhh--cCCEEEEEEeCCCcccHHHHHHHHHHHHhCCCCCCCcEEEEEeCCCCCC
Q 029517 55 NSKLVFWDLGGQPGLR----SIWEKYYE--EAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPD 127 (192)
Q Consensus 55 ~~~~~i~D~~G~~~~~----~~~~~~~~--~~d~ii~v~D~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~ 127 (192)
+..+.|+||+|..... ......++ ..+.+++|+|++-. ...+...+..+... ..-=++.+|.|-..
T Consensus 320 ~~DvVLIDTaGRs~kd~~lm~EL~~~lk~~~PdevlLVLsATtk--~~d~~~i~~~F~~~-----~idglI~TKLDET~ 391 (436)
T PRK11889 320 RVDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASMK--SKDMIEIITNFKDI-----HIDGIVFTKFDETA 391 (436)
T ss_pred CCCEEEEeCccccCcCHHHHHHHHHHHhhcCCCeEEEEECCccC--hHHHHHHHHHhcCC-----CCCEEEEEcccCCC
Confidence 4689999999975321 12233333 35678899987533 23333444444321 23446789999765
No 468
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=61.78 E-value=33 Score=27.75 Aligned_cols=66 Identities=20% Similarity=0.212 Sum_probs=38.2
Q ss_pred cCEEEEEEeCCCCcccHH----H---HHHhhhcCCE-----EEEEEeCCCc-ccHHHHHHHHHHHHhCCCCCCCcEEEEE
Q 029517 54 SNSKLVFWDLGGQPGLRS----I---WEKYYEEAHA-----VVFVIDAACP-SRFEDSKTALEKVLRNEDLQGAPLLILA 120 (192)
Q Consensus 54 ~~~~~~i~D~~G~~~~~~----~---~~~~~~~~d~-----ii~v~D~~~~-~s~~~~~~~~~~i~~~~~~~~~piiiv~ 120 (192)
.++.+.+.||+|...-.. . ....++..+. ++++.|++-. +++..++.+-+.+ ++ --+++
T Consensus 220 r~~DvvliDTAGRLhnk~nLM~EL~KI~rV~~k~~~~ap~e~llvlDAttGqnal~QAk~F~eav-------~l-~GiIl 291 (340)
T COG0552 220 RGIDVVLIDTAGRLHNKKNLMDELKKIVRVIKKDDPDAPHEILLVLDATTGQNALSQAKIFNEAV-------GL-DGIIL 291 (340)
T ss_pred cCCCEEEEeCcccccCchhHHHHHHHHHHHhccccCCCCceEEEEEEcccChhHHHHHHHHHHhc-------CC-ceEEE
Confidence 578899999999542211 1 1223344444 8888899865 3444444432221 22 23678
Q ss_pred eCCCCCC
Q 029517 121 NKQDLPD 127 (192)
Q Consensus 121 nK~Dl~~ 127 (192)
+|.|...
T Consensus 292 TKlDgtA 298 (340)
T COG0552 292 TKLDGTA 298 (340)
T ss_pred EecccCC
Confidence 9999654
No 469
>PRK01889 GTPase RsgA; Reviewed
Probab=61.47 E-value=6.1 Score=32.12 Aligned_cols=53 Identities=13% Similarity=-0.020 Sum_probs=27.3
Q ss_pred hccccHHHHHHHHhhhhccCCCCCCCCCCCCcceEEEEEEecCEEEEEEeCCCCcc
Q 029517 13 FTKTEFHTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPG 68 (192)
Q Consensus 13 ~kst~~~~l~~~~~~~~~~~~~~~~~~~~~T~g~~~~~~~~~~~~~~i~D~~G~~~ 68 (192)
=|||++|+|++.......++........-.|....+..+... ..++||||...
T Consensus 207 GKStLin~L~g~~~~~~G~i~~~~~~g~~tt~~~~l~~l~~~---~~l~DtpG~~~ 259 (356)
T PRK01889 207 GKSTLVNALLGEEVQKTGAVREDDSKGRHTTTHRELHPLPSG---GLLIDTPGMRE 259 (356)
T ss_pred cHHHHHHHHHHhcccceeeEEECCCCCcchhhhccEEEecCC---CeecCCCchhh
Confidence 378999999887665444433211111112222233333322 35889999754
No 470
>PF02492 cobW: CobW/HypB/UreG, nucleotide-binding domain; InterPro: IPR003495 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. CobW proteins are generally found proximal to the trimeric cobaltochelatase subunit CobN, which is essential for vitamin B12 (cobalamin) biosynthesis []. They contain a P-loop nucleotide-binding loop in the N-terminal domain and a histidine-rich region in the C-terminal portion suggesting a role in metal binding, possibly as an intermediary between the cobalt transport and chelation systems. CobW might be involved in cobalt reduction leading to cobalt(I) corrinoids. This entry represents CobW-like proteins, including P47K (P31521 from SWISSPROT), a Pseudomonas chlororaphis protein needed for nitrile hydratase expression [], and urease accessory protein UreG, which acts as a chaperone in the activation of urease upon insertion of nickel into the active site [].; PDB: 2WSM_B 1NIJ_A 2HF9_A 2HF8_B.
Probab=61.46 E-value=8 Score=27.89 Aligned_cols=68 Identities=16% Similarity=0.171 Sum_probs=39.0
Q ss_pred CEEEEEEeCCCCcccHHH--HHHh---hhcCCEEEEEEeCCCcccHHHHHHHHHHHHhCCCCCCCcEEEEEeCCCCCCC
Q 029517 55 NSKLVFWDLGGQPGLRSI--WEKY---YEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDA 128 (192)
Q Consensus 55 ~~~~~i~D~~G~~~~~~~--~~~~---~~~~d~ii~v~D~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~~ 128 (192)
.....|..+.|...-... .... .-..+.+|.|+|+............+....+.. =++++||+|+...
T Consensus 84 ~~d~IiIE~sG~a~p~~l~~~~~~~~~~~~~~~iI~vVDa~~~~~~~~~~~~~~~Qi~~A------DvIvlnK~D~~~~ 156 (178)
T PF02492_consen 84 RPDRIIIETSGLADPAPLILQDPPLKEDFRLDSIITVVDATNFDELENIPELLREQIAFA------DVIVLNKIDLVSD 156 (178)
T ss_dssp C-SEEEEEEECSSGGGGHHHHSHHHHHHESESEEEEEEEGTTHGGHTTHCHHHHHHHCT-------SEEEEE-GGGHHH
T ss_pred CcCEEEECCccccccchhhhccccccccccccceeEEeccccccccccchhhhhhcchhc------CEEEEeccccCCh
Confidence 467788899996543332 1111 124689999999976543444444444444332 3578999998753
No 471
>PF08438 MMR_HSR1_C: GTPase of unknown function C-terminal; InterPro: IPR013646 This domain is found at the C terminus of IPR002917 from INTERPRO in archaeal and eukaryotic GTP-binding proteins. ; PDB: 1WXQ_A.
Probab=59.90 E-value=3.6 Score=27.45 Aligned_cols=32 Identities=22% Similarity=0.232 Sum_probs=14.3
Q ss_pred EEeCCCCCCCCCHHHHHhHcCccccCCcceEEEEeeec
Q 029517 119 LANKQDLPDAVSADELARYLDLKKLDERVCMFEAVSGY 156 (192)
Q Consensus 119 v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 156 (192)
++||+|++. ..+.+.+... ......++++||.
T Consensus 1 AaNK~D~~~--a~~ni~kl~~----~~~~~~vVp~SA~ 32 (109)
T PF08438_consen 1 AANKADLPA--ADENIEKLKE----KYPDEPVVPTSAA 32 (109)
T ss_dssp EEE-GGG-S---HHHHHHHHH----HHTT-EEEEE-HH
T ss_pred CCccccccc--cHhHHHHHHH----hCCCCceeeccHH
Confidence 579999754 2333333332 1124677777774
No 472
>COG1908 FrhD Coenzyme F420-reducing hydrogenase, delta subunit [Energy production and conversion]
Probab=58.52 E-value=14 Score=25.06 Aligned_cols=43 Identities=14% Similarity=0.112 Sum_probs=33.0
Q ss_pred HhHcCccccCCcceEEEEeeecCCCCHHHHHHHHHHHHHhcch
Q 029517 135 ARYLDLKKLDERVCMFEAVSGYDGFGIKESVEWLVEVMERSKR 177 (192)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~Sa~~~~gi~e~~~~i~~~i~~~~~ 177 (192)
.+.++...+....+.++.+||-.++.+.+.++..++.+.+.-.
T Consensus 84 ke~l~elgie~eRv~~~wiSa~E~ekf~e~~~efv~~i~~lGp 126 (132)
T COG1908 84 KELLKELGIEPERVRVLWISAAEGEKFAETINEFVERIKELGP 126 (132)
T ss_pred HHHHHHhCCCcceEEEEEEehhhHHHHHHHHHHHHHHHHHhCC
Confidence 3333333345667899999999999999999999999887643
No 473
>PRK13506 formate--tetrahydrofolate ligase; Provisional
Probab=57.73 E-value=19 Score=31.12 Aligned_cols=58 Identities=16% Similarity=0.094 Sum_probs=41.0
Q ss_pred CCCcEEEEEeCCCCCCCCCHHHHHhHcCccccCCcceEEEEeee--cCCCCHHHHHHHHHHHHH
Q 029517 112 QGAPLLILANKQDLPDAVSADELARYLDLKKLDERVCMFEAVSG--YDGFGIKESVEWLVEVME 173 (192)
Q Consensus 112 ~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa--~~~~gi~e~~~~i~~~i~ 173 (192)
.+.|+++.+|+..-....+.+.+.+++. +..+..+..+.. +-|.|-.++-+.+++.+.
T Consensus 392 fg~pvVVaiN~F~~Dt~~Ei~~~~~~~~----~~~~~~~~~~~~wa~GGeGa~eLA~~Vv~a~e 451 (578)
T PRK13506 392 YGLPVVVAINRFPTDTDEELEWLKEAVL----LTGAFGCEISEAFAQGGEGATALAQAVVRACE 451 (578)
T ss_pred cCCCeEEEecCCCCCCHHHHHHHHHHHH----HcCCCcEEEechhhccchhHHHHHHHHHHHhh
Confidence 4799999999997554445566667775 124556665555 447888888888887776
No 474
>TIGR03018 pepcterm_TyrKin exopolysaccharide/PEPCTERM locus tyrosine autokinase. Members of this protein family are related to a known protein-tyrosine autokinase and to numerous homologs from exopolysaccharide biosynthesis region proteins, many of which are designated as chain length determinants. Most members of this family contain a short region, immediately C-terminal to the region modeled here, with an abundance of Tyr residues. These C-terminal tyrosine residues are likely to be autophosphorylation sites. Some members of this family are fusion proteins.
Probab=57.65 E-value=74 Score=23.40 Aligned_cols=48 Identities=15% Similarity=0.119 Sum_probs=32.7
Q ss_pred EEEEEeCCCCcccHHHHHHhhhcCCEEEEEEeCCCcccHHHHHHHHHHHH
Q 029517 57 KLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVL 106 (192)
Q Consensus 57 ~~~i~D~~G~~~~~~~~~~~~~~~d~ii~v~D~~~~~s~~~~~~~~~~i~ 106 (192)
.+.|+|+|...... ........+|.+|+|+... ..+...+.+.+..+.
T Consensus 150 D~IiiD~pp~~~~~-~~~~l~~~aD~viiV~~~~-~~~~~~~~~~~~~l~ 197 (207)
T TIGR03018 150 RIIIIDTPPLLVFS-EARALARLVGQIVLVVEEG-RTTQEAVKEALSALE 197 (207)
T ss_pred CEEEEECCCCcchh-HHHHHHHhCCEEEEEEECC-CCCHHHHHHHHHHhc
Confidence 68999999866432 2333456799999999876 444666666666554
No 475
>PRK13235 nifH nitrogenase reductase; Reviewed
Probab=57.49 E-value=31 Score=26.62 Aligned_cols=70 Identities=17% Similarity=0.196 Sum_probs=40.6
Q ss_pred cCEEEEEEeCCCCcccHHH-HHHhhhcCCEEEEEEeCCCcccHHHHHHHHHHHHhCCCCCCCcEE-EEEeCCC
Q 029517 54 SNSKLVFWDLGGQPGLRSI-WEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLL-ILANKQD 124 (192)
Q Consensus 54 ~~~~~~i~D~~G~~~~~~~-~~~~~~~~d~ii~v~D~~~~~s~~~~~~~~~~i~~~~~~~~~pii-iv~nK~D 124 (192)
.++.+.++||+|....... ....+..+|.+|+++.++ +.++..+...++.+.......+.++. ++.|+..
T Consensus 116 ~~yD~ilID~~~~~~~~~l~~~~a~~aad~vlIp~~~e-~~sl~g~~~ll~~i~~~~~~~~l~i~giv~n~~~ 187 (274)
T PRK13235 116 WNLDYVFYDVLGDVVCGGFAMPIRDGKAEEIYIVCSGE-MMAMYAANNICKGILKYADAGGVRLGGLICNSRK 187 (274)
T ss_pred CCCCEEEEECCCCCccCCcccccccccccEEEEEecCc-hhHHHHHHHHHHHHHHHhhcCCCceeEEEEecCC
Confidence 4578999999875321111 111123689999999764 55677666666555443212345443 6678753
No 476
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=55.46 E-value=56 Score=27.05 Aligned_cols=67 Identities=12% Similarity=0.084 Sum_probs=40.4
Q ss_pred cCEEEEEEeCCCCcccHH----HHHHhhhcC--C-EEEEEEeCCCcccHHHHHHHHHHHHhCCCCCCCcEEEEEeCCCCC
Q 029517 54 SNSKLVFWDLGGQPGLRS----IWEKYYEEA--H-AVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLP 126 (192)
Q Consensus 54 ~~~~~~i~D~~G~~~~~~----~~~~~~~~~--d-~ii~v~D~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~ 126 (192)
.++.+.++||+|...... ....++..+ + -.++|+|++.. ...+.+.+...... -+-=++.||.|-.
T Consensus 253 ~~~DlVLIDTaGr~~~~~~~l~el~~~l~~~~~~~e~~LVlsat~~--~~~~~~~~~~~~~~-----~~~~~I~TKlDet 325 (388)
T PRK12723 253 KDFDLVLVDTIGKSPKDFMKLAEMKELLNACGRDAEFHLAVSSTTK--TSDVKEIFHQFSPF-----SYKTVIFTKLDET 325 (388)
T ss_pred CCCCEEEEcCCCCCccCHHHHHHHHHHHHhcCCCCeEEEEEcCCCC--HHHHHHHHHHhcCC-----CCCEEEEEeccCC
Confidence 467899999999653221 233344432 3 58899999765 34444444443211 2445779999975
Q ss_pred C
Q 029517 127 D 127 (192)
Q Consensus 127 ~ 127 (192)
.
T Consensus 326 ~ 326 (388)
T PRK12723 326 T 326 (388)
T ss_pred C
Confidence 4
No 477
>PRK11670 antiporter inner membrane protein; Provisional
Probab=54.74 E-value=89 Score=25.62 Aligned_cols=67 Identities=15% Similarity=0.083 Sum_probs=39.0
Q ss_pred CEEEEEEeCCCCcccHHHHHHhhhcCCEEEEEEeCCCcccHHHHHHHHHHHHhCCCCCCCcEE-EEEeCCCCC
Q 029517 55 NSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLL-ILANKQDLP 126 (192)
Q Consensus 55 ~~~~~i~D~~G~~~~~~~~~~~~~~~d~ii~v~D~~~~~s~~~~~~~~~~i~~~~~~~~~pii-iv~nK~Dl~ 126 (192)
.+.+.|+|+|..-.........+-.+|++|+|.-+... ++..+...+..+.+ .+.|++ +|.|+.+..
T Consensus 215 ~yDyvIID~PPg~gd~~l~~~~l~aad~viiV~tp~~~-s~~da~~~i~~~~~----~~~~ilGiV~Nm~~~~ 282 (369)
T PRK11670 215 DLDYLVLDMPPGTGDIQLTLAQNIPVTGAVVVTTPQDI-ALIDAKKGIVMFEK----VEVPVLGIVENMSMHI 282 (369)
T ss_pred cCCEEEEeCCCCCchHHHHHhhhccCCeEEEEecCchh-HHHHHHHHHHHHhc----cCCCeEEEEEcCCccc
Confidence 57899999997542221222223458999999976533 33344444433322 356654 688998753
No 478
>PHA02519 plasmid partition protein SopA; Reviewed
Probab=54.72 E-value=44 Score=27.58 Aligned_cols=69 Identities=17% Similarity=0.065 Sum_probs=40.7
Q ss_pred CEEEEEEeCCCCcccHHHHHHhhhcCCEEEEEEeCCCcccHHHHHHH---HHHHHhCCC--CCCCcEEEEEeCCCCC
Q 029517 55 NSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTA---LEKVLRNED--LQGAPLLILANKQDLP 126 (192)
Q Consensus 55 ~~~~~i~D~~G~~~~~~~~~~~~~~~d~ii~v~D~~~~~s~~~~~~~---~~~i~~~~~--~~~~piiiv~nK~Dl~ 126 (192)
.+.+.|+|+|+...+ .....+-.+|.+|+.+.++ ..++..+... +..+..... ..+..+-++.|+.|..
T Consensus 234 ~YD~IlID~pPslg~--lt~nAL~AAd~vliPv~~~-~~s~~s~~~~~~~i~~~~~~~~~~~~~~~l~il~t~~~~~ 307 (387)
T PHA02519 234 NYDIIVIDSAPNLGT--GTINVVCAADVIVVATPAE-LFDYVSVLQFFTMLLDLLATVDLGGFEPVVRLLLTKYSLT 307 (387)
T ss_pred cCCEEEEECCCCccH--HHHHHHHHhCEEEEecCCc-HHHHHHHHHHHHHHHHHHHHHHhcccCCCeEEEEeeECCC
Confidence 578999999998754 3444567789999988664 3334433332 222221100 0123344788999865
No 479
>PF09419 PGP_phosphatase: Mitochondrial PGP phosphatase; InterPro: IPR010021 This group of hypothetical proteins is a part of the IIIA subfamily of the haloacid dehalogenase (HAD) superfamily of hydrolases. All characterised members of this subfamily and most characterised members of the HAD superfamily are phosphatases. HAD superfamily phosphatases contain active site residues in several conserved catalytic motifs [], all of which are found conserved here. This family consists of sequences from fungi, plants, cyanobacteria, Gram-positive bacteria and Deinococcus. There is presently no characterisation of any sequence in this family.
Probab=53.41 E-value=83 Score=22.71 Aligned_cols=68 Identities=9% Similarity=0.004 Sum_probs=45.1
Q ss_pred HHHHHHHHHHHHhCCCCCCCcEEEEEeCCCCCCCCCHHHHHhHcCccccCCcceEEEEeeecCCCCHHHHHHHHH
Q 029517 95 FEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAVSADELARYLDLKKLDERVCMFEAVSGYDGFGIKESVEWLV 169 (192)
Q Consensus 95 ~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~e~~~~i~ 169 (192)
..++..|++++.+.. ....+++|-|-+-.......+++....+ ..+++++.-++++-.+..++...+.
T Consensus 61 ~~~~~~~~~~l~~~~--~~~~v~IvSNsaGs~~d~~~~~a~~~~~-----~lgIpvl~h~~kKP~~~~~i~~~~~ 128 (168)
T PF09419_consen 61 PPEYAEWLNELKKQF--GKDRVLIVSNSAGSSDDPDGERAEALEK-----ALGIPVLRHRAKKPGCFREILKYFK 128 (168)
T ss_pred CHHHHHHHHHHHHHC--CCCeEEEEECCCCcccCccHHHHHHHHH-----hhCCcEEEeCCCCCccHHHHHHHHh
Confidence 367788888888763 2236899999864333223445554444 5578888888988877777776653
No 480
>TIGR01287 nifH nitrogenase iron protein. This model describes nitrogenase (EC 1.18.6.1) iron protein, also called nitrogenase reductase or nitrogenase component II. This model includes molybdenum-iron nitrogenase reductase (nifH), vanadium-iron nitrogenase reductase (vnfH), and iron-iron nitrogenase reductase (anfH). The model excludes the homologous protein from the light-independent protochlorophyllide reductase.
Probab=53.34 E-value=25 Score=27.12 Aligned_cols=68 Identities=15% Similarity=0.201 Sum_probs=37.8
Q ss_pred CEEEEEEeCCCCcccHHH-HHHhhhcCCEEEEEEeCCCcccHHHHHHHHHHHHhCCCCCCCcEE-EEEeCC
Q 029517 55 NSKLVFWDLGGQPGLRSI-WEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLL-ILANKQ 123 (192)
Q Consensus 55 ~~~~~i~D~~G~~~~~~~-~~~~~~~~d~ii~v~D~~~~~s~~~~~~~~~~i~~~~~~~~~pii-iv~nK~ 123 (192)
++.+.++||+|....... .......+|.+|+++.++ ..++..+...++.+.+.....+.++. ++.|+.
T Consensus 115 ~yD~iiIDt~~~~~~~~~~~~~~~~aAD~viip~~p~-~~sl~~~~~l~~~i~~~~~~~~~~~~giv~n~~ 184 (275)
T TIGR01287 115 DLDFVFYDVLGDVVCGGFAMPIREGKAQEIYIVTSGE-MMALYAANNICKGILKYAKSGGVRLGGLICNSR 184 (275)
T ss_pred cCCEEEEeccCcceecceeeccccccccEEEEEecch-HHHHHHHHHHHHHHHHHHhcCCCeeeEEEEcCC
Confidence 578999999885422111 111123689999999875 44566655555443332111344444 455653
No 481
>KOG0052 consensus Translation elongation factor EF-1 alpha/Tu [Translation, ribosomal structure and biogenesis]
Probab=52.99 E-value=13 Score=30.54 Aligned_cols=76 Identities=17% Similarity=0.148 Sum_probs=45.6
Q ss_pred EEEecCEEEEEEeCCCCcccHHHHHHhhhcCCEEEEEEeCCCcc-----cHHHHHHHHHHHHhCCCCCCCcEEEEEeCCC
Q 029517 50 RIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPS-----RFEDSKTALEKVLRNEDLQGAPLLILANKQD 124 (192)
Q Consensus 50 ~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ii~v~D~~~~~-----s~~~~~~~~~~i~~~~~~~~~piiiv~nK~D 124 (192)
.+....+.+.+.|.||+..+......-...+|+.++++.+...+ +....-.. ..+-...+.-.+.++.+||+|
T Consensus 76 ~~~t~k~~i~iid~pgh~d~~k~mitg~sqaD~avliva~~~gefEagiskngqt~e--halla~tlgv~qliv~v~k~D 153 (391)
T KOG0052|consen 76 KFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTRE--HALLAFTLGVKQLIVGVNKMD 153 (391)
T ss_pred cccceeEEEEEecCCCCCceeeeEEeeEeeeceeEEEEeeeccceeeeccccchhhh--hhhhhccccceeeeEEeeccc
Confidence 34455778999999999877654444456788888887763211 11111111 111111123468889999999
Q ss_pred CCC
Q 029517 125 LPD 127 (192)
Q Consensus 125 l~~ 127 (192)
-.+
T Consensus 154 ~~~ 156 (391)
T KOG0052|consen 154 STE 156 (391)
T ss_pred ccC
Confidence 765
No 482
>cd04169 RF3 RF3 subfamily. Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts.
Probab=52.31 E-value=14 Score=28.74 Aligned_cols=29 Identities=21% Similarity=0.297 Sum_probs=25.1
Q ss_pred CcceEEEEeeecCCCCHHHHHHHHHHHHH
Q 029517 145 ERVCMFEAVSGYDGFGIKESVEWLVEVME 173 (192)
Q Consensus 145 ~~~~~~~~~Sa~~~~gi~e~~~~i~~~i~ 173 (192)
..-+|++..||.++.||..+++.|.+.+.
T Consensus 237 ~~~~Pv~~gsa~~~~Gv~~Lld~i~~~~P 265 (267)
T cd04169 237 GELTPVFFGSALNNFGVQELLDALVDLAP 265 (267)
T ss_pred CCEEEEEecccccCcCHHHHHHHHHHHCC
Confidence 45689999999999999999999987653
No 483
>KOG2743 consensus Cobalamin synthesis protein [Coenzyme transport and metabolism]
Probab=52.13 E-value=89 Score=25.20 Aligned_cols=37 Identities=16% Similarity=0.262 Sum_probs=26.4
Q ss_pred cCEEEEEEeCCCCcccHHHHHHhhh--------cCCEEEEEEeCC
Q 029517 54 SNSKLVFWDLGGQPGLRSIWEKYYE--------EAHAVVFVIDAA 90 (192)
Q Consensus 54 ~~~~~~i~D~~G~~~~~~~~~~~~~--------~~d~ii~v~D~~ 90 (192)
+.+...+..|.|...-.+....+.. ..||+|-|+|+.
T Consensus 144 GkfD~IllETTGlAnPaPia~~Fw~dd~l~sdVkLDGIVTvvD~K 188 (391)
T KOG2743|consen 144 GKFDHILLETTGLANPAPIASMFWLDDELGSDVKLDGIVTVVDAK 188 (391)
T ss_pred CCcceEEEeccCCCCcHHHHHHHhhhhhhcCceeeeeEEEEEehh
Confidence 3567889999997765555444332 369999999984
No 484
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=51.28 E-value=78 Score=26.65 Aligned_cols=67 Identities=19% Similarity=0.235 Sum_probs=38.2
Q ss_pred cCEEEEEEeCCCCccc-HH---HHHHhhhc-----CCEEEEEEeCCCcccHHHHHHHHHHHHhCCCCCCCcEEEEEeCCC
Q 029517 54 SNSKLVFWDLGGQPGL-RS---IWEKYYEE-----AHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQD 124 (192)
Q Consensus 54 ~~~~~~i~D~~G~~~~-~~---~~~~~~~~-----~d~ii~v~D~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~D 124 (192)
.+..+.++||+|.... .. .+..+++. ..-.++|+|++.. .+.+......+... -+-=++.||.|
T Consensus 298 ~~~D~VLIDTaGr~~rd~~~l~eL~~~~~~~~~~~~~e~~LVLsAt~~--~~~~~~~~~~f~~~-----~~~glIlTKLD 370 (432)
T PRK12724 298 DGSELILIDTAGYSHRNLEQLERMQSFYSCFGEKDSVENLLVLSSTSS--YHHTLTVLKAYESL-----NYRRILLTKLD 370 (432)
T ss_pred CCCCEEEEeCCCCCccCHHHHHHHHHHHHhhcCCCCCeEEEEEeCCCC--HHHHHHHHHHhcCC-----CCCEEEEEccc
Confidence 3568899999996522 11 22333332 3357899998755 23333443333111 23446789999
Q ss_pred CCC
Q 029517 125 LPD 127 (192)
Q Consensus 125 l~~ 127 (192)
-..
T Consensus 371 Et~ 373 (432)
T PRK12724 371 EAD 373 (432)
T ss_pred CCC
Confidence 765
No 485
>PRK11519 tyrosine kinase; Provisional
Probab=51.14 E-value=1.1e+02 Score=27.66 Aligned_cols=67 Identities=18% Similarity=0.155 Sum_probs=43.4
Q ss_pred cCEEEEEEeCCCCcccHHHHHHhhhcCCEEEEEEeCCCcccHHHHHHHHHHHHhCCCCCCCc-EEEEEeCCCCC
Q 029517 54 SNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAP-LLILANKQDLP 126 (192)
Q Consensus 54 ~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ii~v~D~~~~~s~~~~~~~~~~i~~~~~~~~~p-iiiv~nK~Dl~ 126 (192)
..+.+.|+|||........ ....+.+|++|+|+... ..+...+...+..+.+. +.+ +-+|+|+++..
T Consensus 634 ~~yD~ViiDtpP~~~v~Da-~~l~~~~d~~l~Vvr~~-~t~~~~~~~~~~~l~~~----~~~~~G~VlN~v~~~ 701 (719)
T PRK11519 634 KNYDLVLIDTPPILAVTDA-AIVGRHVGTTLMVARYA-VNTLKEVETSLSRFEQN----GIPVKGVILNSIFRR 701 (719)
T ss_pred hcCCEEEEeCCCcccchHH-HHHHHHCCeEEEEEeCC-CCCHHHHHHHHHHHHhC----CCCeEEEEEeCCccC
Confidence 3578999999996543222 22446799999999764 33355555555555443 444 44789999743
No 486
>PRK13660 hypothetical protein; Provisional
Probab=49.92 E-value=91 Score=22.85 Aligned_cols=19 Identities=16% Similarity=0.225 Sum_probs=11.9
Q ss_pred HHhhhcCCEEEEEEeCCCc
Q 029517 74 EKYYEEAHAVVFVIDAACP 92 (192)
Q Consensus 74 ~~~~~~~d~ii~v~D~~~~ 92 (192)
...+.++|++|.+||...+
T Consensus 124 ~fmv~~sd~~i~~YD~e~~ 142 (182)
T PRK13660 124 QFMLEHTDGALLVYDEENE 142 (182)
T ss_pred HHHHHccCeEEEEEcCCCC
Confidence 3345667777777776544
No 487
>COG2759 MIS1 Formyltetrahydrofolate synthetase [Nucleotide transport and metabolism]
Probab=49.51 E-value=54 Score=27.81 Aligned_cols=58 Identities=19% Similarity=0.220 Sum_probs=39.8
Q ss_pred CCCcEEEEEeCCCCCCCCCHHHHHhHcCccccCCcceEEEEee--ecCCCCHHHHHHHHHHHHHh
Q 029517 112 QGAPLLILANKQDLPDAVSADELARYLDLKKLDERVCMFEAVS--GYDGFGIKESVEWLVEVMER 174 (192)
Q Consensus 112 ~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S--a~~~~gi~e~~~~i~~~i~~ 174 (192)
-++|+++.+||.-.....+.+.+.+++. ..+.++..+. ++-|.|-.|+-++.++.+.+
T Consensus 368 fgvp~VVAIN~F~tDt~~Ei~~i~~~~~-----~~gv~~~ls~vwakGg~Gg~eLA~kVv~~~~~ 427 (554)
T COG2759 368 FGVPVVVAINKFPTDTEAEIAAIEKLCE-----EHGVEVALSEVWAKGGEGGIELAKKVVEAIEQ 427 (554)
T ss_pred cCCCeEEEeccCCCCCHHHHHHHHHHHH-----HcCCceeehhhhhccCccHHHHHHHHHHHHhC
Confidence 3799999999996443444455666665 4455544443 46688899998888887765
No 488
>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional
Probab=49.21 E-value=1.1e+02 Score=27.69 Aligned_cols=67 Identities=7% Similarity=-0.054 Sum_probs=43.0
Q ss_pred CEEEEEEeCCCCcccHHHHHHhhhcCCEEEEEEeCCCcccHHHHHHHHHHHHhCCCCCCCcEEEEEeCCCCC
Q 029517 55 NSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLP 126 (192)
Q Consensus 55 ~~~~~i~D~~G~~~~~~~~~~~~~~~d~ii~v~D~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~ 126 (192)
.+.+.|+|+|........ ......+|++++|+... ..+...+...++.+... ....+-+|+|+++..
T Consensus 640 ~yD~IIIDtPP~~~~~Da-~~la~~ad~~llVvr~~-~t~~~~~~~~~~~l~~~---~~~~~G~VlN~~~~~ 706 (726)
T PRK09841 640 HYDLVIVDTPPMLAVSDA-AVVGRSVGTSLLVARFG-LNTAKEVSLSMQRLEQA---GVNIKGAILNGVIKR 706 (726)
T ss_pred cCCEEEEeCCCccccchH-HHHHHhCCeEEEEEeCC-CCCHHHHHHHHHHHHhC---CCceEEEEEeCcccC
Confidence 578999999986544222 12235789999998764 33356666666666443 223445789999854
No 489
>PLN02759 Formate--tetrahydrofolate ligase
Probab=49.05 E-value=50 Score=28.97 Aligned_cols=57 Identities=11% Similarity=-0.013 Sum_probs=41.0
Q ss_pred CCCcEEEEEeCCCCCCCCCHHHHHhHcCccccCCcc-eEEEEeee--cCCCCHHHHHHHHHHHHH
Q 029517 112 QGAPLLILANKQDLPDAVSADELARYLDLKKLDERV-CMFEAVSG--YDGFGIKESVEWLVEVME 173 (192)
Q Consensus 112 ~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~-~~~~~~Sa--~~~~gi~e~~~~i~~~i~ 173 (192)
.+.|+++.+|+..-....+.+.+.+++. ..+ +.+..+.. +-|.|-.++-+.+++.+.
T Consensus 449 fg~pvVVaiN~F~~Dt~~Ei~~v~~~~~-----~~ga~~~~~~~~wa~GGeGa~eLA~~Vv~a~e 508 (637)
T PLN02759 449 YGVNVVVAINMFATDTEAELEAVRQAAL-----AAGAFDAVLCTHHAHGGKGAVDLGEAVQKACE 508 (637)
T ss_pred cCCCeEEEecCCCCCCHHHHHHHHHHHH-----HcCCCcEEEechhhcccHHHHHHHHHHHHHHh
Confidence 4799999999997655455566667775 445 36555555 447788898888887776
No 490
>PRK13695 putative NTPase; Provisional
Probab=49.05 E-value=94 Score=22.03 Aligned_cols=79 Identities=13% Similarity=0.080 Sum_probs=41.5
Q ss_pred HhhhcCCEEEEEEe---CCCcccHHHHHHHHHHHHhCCCCCCCcEEEEEeCCCCCCCCCHHHHHhHcCccccCCcceEEE
Q 029517 75 KYYEEAHAVVFVID---AACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAVSADELARYLDLKKLDERVCMFE 151 (192)
Q Consensus 75 ~~~~~~d~ii~v~D---~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (192)
..+++++. +++| ..+..+ ....+.+..+.+ .+.|++++.||.... ..+.+... .....++
T Consensus 92 ~~l~~~~~--lllDE~~~~e~~~-~~~~~~l~~~~~----~~~~~i~v~h~~~~~-----~~~~~i~~-----~~~~~i~ 154 (174)
T PRK13695 92 RALEEADV--IIIDEIGKMELKS-PKFVKAVEEVLD----SEKPVIATLHRRSVH-----PFVQEIKS-----RPGGRVY 154 (174)
T ss_pred hccCCCCE--EEEECCCcchhhh-HHHHHHHHHHHh----CCCeEEEEECchhhH-----HHHHHHhc-----cCCcEEE
Confidence 34456666 6888 322211 222333344432 468999999986321 11222222 2345666
Q ss_pred EeeecCCCCHHHHHHHHHHHHH
Q 029517 152 AVSGYDGFGIKESVEWLVEVME 173 (192)
Q Consensus 152 ~~Sa~~~~gi~e~~~~i~~~i~ 173 (192)
++ +.+|=+++...+.+.+.
T Consensus 155 ~~---~~~~r~~~~~~~~~~~~ 173 (174)
T PRK13695 155 EL---TPENRDSLPFEILNRLK 173 (174)
T ss_pred EE---cchhhhhHHHHHHHHHh
Confidence 66 44566677777777553
No 491
>PRK13233 nifH nitrogenase reductase; Reviewed
Probab=48.84 E-value=26 Score=27.01 Aligned_cols=68 Identities=16% Similarity=0.210 Sum_probs=39.1
Q ss_pred CEEEEEEeCCCCcccHHHHHHhh--hcCCEEEEEEeCCCcccHHHHHHHHHHHHhCCCCCCCcEE-EEEeCCC
Q 029517 55 NSKLVFWDLGGQPGLRSIWEKYY--EEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLL-ILANKQD 124 (192)
Q Consensus 55 ~~~~~i~D~~G~~~~~~~~~~~~--~~~d~ii~v~D~~~~~s~~~~~~~~~~i~~~~~~~~~pii-iv~nK~D 124 (192)
.+.+.++|++|........ ..+ ..+|.+|+++.++ ..++..+...++.+.+.....+.+++ ++.|+..
T Consensus 118 ~yD~iliD~~~~~~~~al~-~~~~~~aad~viIp~~p~-~~sl~g~~~l~~~i~~~~~~~~l~~~Giv~n~~~ 188 (275)
T PRK13233 118 DLDFVFFDVLGDVVCGGFA-MPIRDGKAQEVYIVASGE-MMAIYAANNICKGLVKYAEQSGVRLGGIICNSRN 188 (275)
T ss_pred CCCEEEEecCCceeecccc-ccchhccCceEEEecccc-HHHHHHHHHHHHHHHHHHhcCCCceeEEEeeCCC
Confidence 5788999997743211111 001 2689999999875 55666666665544322112455544 7788753
No 492
>KOG2484 consensus GTPase [General function prediction only]
Probab=47.95 E-value=11 Score=31.23 Aligned_cols=45 Identities=16% Similarity=0.250 Sum_probs=29.9
Q ss_pred hhhccccHHHHHHHHhhhhccCCCCCCCCCCCCcceEEEEEEecCEEEEEEeCCC
Q 029517 11 YIFTKTEFHTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGG 65 (192)
Q Consensus 11 ~~~kst~~~~l~~~~~~~~~~~~~~~~~~~~~T~g~~~~~~~~~~~~~~i~D~~G 65 (192)
.+=|||++|+|..+..+.++.+++-+..- ..+.. +-.+.+.|.||
T Consensus 262 NVGKSSvINsL~~~k~C~vg~~pGvT~sm---------qeV~L-dk~i~llDsPg 306 (435)
T KOG2484|consen 262 NVGKSSVINSLKRRKACNVGNVPGVTRSM---------QEVKL-DKKIRLLDSPG 306 (435)
T ss_pred CCChhHHHHHHHHhccccCCCCccchhhh---------hheec-cCCceeccCCc
Confidence 35589999999999887655555433222 22322 34788999999
No 493
>PRK13231 nitrogenase reductase-like protein; Reviewed
Probab=47.11 E-value=56 Score=25.02 Aligned_cols=66 Identities=12% Similarity=0.045 Sum_probs=39.8
Q ss_pred CEEEEEEeCCCCcccHHHH-HHhhhcCCEEEEEEeCCCcccHHHHHHHHHHHHhCCCCCCCcEEEEEeCCC
Q 029517 55 NSKLVFWDLGGQPGLRSIW-EKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQD 124 (192)
Q Consensus 55 ~~~~~i~D~~G~~~~~~~~-~~~~~~~d~ii~v~D~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~D 124 (192)
++.+.|+||+|........ ......+|.+|+++.++ +.++..+...++.+..... .-..++.|..+
T Consensus 113 ~yD~ViIDt~~~~~~~~~~~~~~~~aaD~vlip~~p~-~~si~~~~~~~~~i~~~~~---~~~~vv~~~~~ 179 (264)
T PRK13231 113 DIDVVIYDVLGDVVCGGFSVPLREDYADEVYIVTSGE-YMSLYAANNIARGIKKLKG---KLGGIICNCRG 179 (264)
T ss_pred CCCEEEEecCCCceEccccccccccccceeEEEecCc-hhHHHHHHHHHHHHHHcCC---cceEEEEcCCC
Confidence 5789999998854221111 11125789999999875 5567777777766654421 11234555554
No 494
>COG1192 Soj ATPases involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=46.34 E-value=95 Score=23.58 Aligned_cols=71 Identities=14% Similarity=0.080 Sum_probs=42.5
Q ss_pred CEEEEEEeCCCCcccHHHHHHhhhcCCEEEEEEeCCCc--ccHHHHHHHHHHHHhCCCCCCCcEEEEEeCCCCCC
Q 029517 55 NSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACP--SRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPD 127 (192)
Q Consensus 55 ~~~~~i~D~~G~~~~~~~~~~~~~~~d~ii~v~D~~~~--~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~ 127 (192)
++.+.|.|+|+.. .......+..+|.+++-+.+... .....+...+..+.+.....-.+..++.|+.|...
T Consensus 119 ~yD~iiID~pp~l--~~l~~nal~asd~vlIP~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~i~~~~~~~~~ 191 (259)
T COG1192 119 DYDYIIIDTPPSL--GVLTLNALAAADHVLIPVQPEFLDLEGLEQLLNTLEDLLKLRRNKLIVVGILITRFDSRT 191 (259)
T ss_pred CCCEEEECCCCch--hHHHHHHHHHcCeeEEecCchHHHHHHHHHHHHHHHHHHHhcCCCcceEEEeeceEcCCc
Confidence 5789999999987 34455566778877777765421 22333334444444433212245557788888644
No 495
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=45.95 E-value=1.1e+02 Score=27.87 Aligned_cols=107 Identities=11% Similarity=0.004 Sum_probs=53.8
Q ss_pred CEEEEEEeCCCCcccHH----HHHHhh--hcCCEEEEEEeCCCcccHHHHHHHHHHHHhCCCCCCCcEEEEEeCCCCCCC
Q 029517 55 NSKLVFWDLGGQPGLRS----IWEKYY--EEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDA 128 (192)
Q Consensus 55 ~~~~~i~D~~G~~~~~~----~~~~~~--~~~d~ii~v~D~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~~ 128 (192)
+..+.|+||+|...... ...... ...+-.++|+|++.. .+.+.+.+..+..... .-+-=+|+||.|-...
T Consensus 263 ~~D~VLIDTAGRs~~d~~l~eel~~l~~~~~p~e~~LVLsAt~~--~~~l~~i~~~f~~~~~--~~i~glIlTKLDEt~~ 338 (767)
T PRK14723 263 DKHLVLIDTVGMSQRDRNVSEQIAMLCGVGRPVRRLLLLNAASH--GDTLNEVVHAYRHGAG--EDVDGCIITKLDEATH 338 (767)
T ss_pred CCCEEEEeCCCCCccCHHHHHHHHHHhccCCCCeEEEEECCCCc--HHHHHHHHHHHhhccc--CCCCEEEEeccCCCCC
Confidence 45799999999543211 122211 234567899998743 3333334333332210 0133567999997653
Q ss_pred CCHHHHHhHcCccccCCcceEEEEeeecCCCCH-HHHH----HHHHHHHHh
Q 029517 129 VSADELARYLDLKKLDERVCMFEAVSGYDGFGI-KESV----EWLVEVMER 174 (192)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi-~e~~----~~i~~~i~~ 174 (192)
. -.+.+... ..+.++..+ .+|++| +++. +.+++.+..
T Consensus 339 ~--G~iL~i~~-----~~~lPI~yi--t~GQ~VPdDL~~a~~~~lv~~ll~ 380 (767)
T PRK14723 339 L--GPALDTVI-----RHRLPVHYV--STGQKVPEHLELAQADELVDRAFA 380 (767)
T ss_pred c--cHHHHHHH-----HHCCCeEEE--ecCCCChhhcccCCHHHHHHHHhc
Confidence 2 23333332 223443333 347777 5553 344555544
No 496
>PF13651 EcoRI_methylase: Adenine-specific methyltransferase EcoRI
Probab=45.47 E-value=96 Score=25.05 Aligned_cols=61 Identities=23% Similarity=0.353 Sum_probs=43.4
Q ss_pred CCcccHH-HHHHhhhcCCEEEEEEeCCCcccHHHHHHHHHHHHhCCCCCCCcEEEEEeCCCCCCCCCHHHHHhHcC
Q 029517 65 GQPGLRS-IWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAVSADELARYLD 139 (192)
Q Consensus 65 G~~~~~~-~~~~~~~~~d~ii~v~D~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~~ 139 (192)
|.-+|++ .....+.+||.|| |+|. |...++++..+.+. ++.++|+||.. ++...++-.+++
T Consensus 120 GdGDFrS~E~i~Ll~eADIVV-----TNPP-FSLFrEyv~~Li~~----~KkFlIIGN~N----aiTYkeiFplik 181 (336)
T PF13651_consen 120 GDGDFRSDECIELLKEADIVV-----TNPP-FSLFREYVAQLIEY----DKKFLIIGNIN----AITYKEIFPLIK 181 (336)
T ss_pred CCCCcCcHHHHHHHhcCCEEE-----eCCC-cHHHHHHHHHHHHh----CCCEEEEeccc----cccHHHHHHHHh
Confidence 4444443 4566778888765 4443 77777888888877 68899999985 567777777776
No 497
>cd00550 ArsA_ATPase Oxyanion-translocating ATPase (ArsA). This ATPase is involved in transport of arsenite, antimonite or other oxyanions across biological membranes in all three kingdoms of life. ArsA contains a highly conserved AAA motif present in the AAA+ ATPase superfamily associated with a variety of cellular activities. To form a functional ATP-driven pump, ArsA interacts with the permease ArsB, which is a channel-forming integral membrane protein. One of the most interesting features of ArsA is the allosteric activation by its transport substrates. A divalent cation, typically Mg2+, is required for its enzymatic activity.
Probab=45.46 E-value=1.2e+02 Score=23.31 Aligned_cols=68 Identities=9% Similarity=0.126 Sum_probs=42.9
Q ss_pred cCEEEEEEeCCCCcccHHHH---------HHhhhc--CCEEEEEEeCCCcccHHHHHHHHHHHHhCCCCCCCc-EEEEEe
Q 029517 54 SNSKLVFWDLGGQPGLRSIW---------EKYYEE--AHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAP-LLILAN 121 (192)
Q Consensus 54 ~~~~~~i~D~~G~~~~~~~~---------~~~~~~--~d~ii~v~D~~~~~s~~~~~~~~~~i~~~~~~~~~p-iiiv~n 121 (192)
..+.+.|+|||......... ...+.. ++++++|..+. .-+..++...+..+... +.| .-+|.|
T Consensus 123 ~~yD~VVvDtpPtg~tlrlL~lp~~l~~~~~~l~d~~~~~~vlV~~p~-~~~~~e~~r~~~~L~~~----g~~v~gvV~N 197 (254)
T cd00550 123 AEYDVVVFDTAPTGHTLRLLSLPTVLSWAREILSDPERTSFRLVCIPE-KMSLYETERAIQELAKY----GIDVDAVIVN 197 (254)
T ss_pred CCCCEEEECCCCcHHHHHHHHhHHHHHHHHHHhcCCcceEEEEEeCCC-hhHHHHHHHHHHHHHHC----CCCCCEEEEe
Confidence 36789999999853221111 112322 56888888875 55567777777766654 344 478899
Q ss_pred CCCCC
Q 029517 122 KQDLP 126 (192)
Q Consensus 122 K~Dl~ 126 (192)
+....
T Consensus 198 ~v~~~ 202 (254)
T cd00550 198 QLLPE 202 (254)
T ss_pred cCccc
Confidence 98754
No 498
>COG0455 flhG Antiactivator of flagellar biosynthesis FleN, an ATPase [Cell motility]
Probab=45.20 E-value=1.5e+02 Score=23.13 Aligned_cols=64 Identities=11% Similarity=0.145 Sum_probs=40.3
Q ss_pred EEEEEEeCCCCcccHHHHHHhhhcCCEEEEEEeCCCcccHHHHHHHHHHHHhCCCCCCCcE-EEEEeCCC
Q 029517 56 SKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPL-LILANKQD 124 (192)
Q Consensus 56 ~~~~i~D~~G~~~~~~~~~~~~~~~d~ii~v~D~~~~~s~~~~~~~~~~i~~~~~~~~~pi-iiv~nK~D 124 (192)
..+.+.|+|+.-.... -.++..+|.+|+|..++ +.++..+-..++.+..... .... ++|.|+.+
T Consensus 113 ~D~iliD~~aGl~~~~--~~~~~~sd~~viVt~pe-~~si~~A~~~i~~~~~~~~--~~~~~~vV~N~v~ 177 (262)
T COG0455 113 YDYILIDTGAGLSRDT--LSFILSSDELVIVTTPE-PTSITDAYKTIKILSKLGL--DLLGRRVVLNRVR 177 (262)
T ss_pred CCEEEEeCCCCccHHH--HHHHHhcCcEEEEeCCC-cchHHHHHHHHHHHHHcCC--ccccceEEEEecc
Confidence 3789999999764433 23445569999999876 4456655555544444321 1112 48899997
No 499
>COG4474 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=45.19 E-value=90 Score=22.63 Aligned_cols=35 Identities=11% Similarity=0.009 Sum_probs=25.3
Q ss_pred HHHhhhcCCEEEEEEeCCCcccHHHHHHHHHHHHh
Q 029517 73 WEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLR 107 (192)
Q Consensus 73 ~~~~~~~~d~ii~v~D~~~~~s~~~~~~~~~~i~~ 107 (192)
-+..+.++|+++++||...+.+......-....+.
T Consensus 123 nqf~le~sdg~ll~YD~ekegs~ky~~~~~K~~~~ 157 (180)
T COG4474 123 NQFLLEKSDGALLFYDEEKEGSPKYFLQKAKKRLD 157 (180)
T ss_pred hhhhhccCceeEEEEcCcccCChHHHHHHHHHhhc
Confidence 34457889999999999988888765555444333
No 500
>PF14606 Lipase_GDSL_3: GDSL-like Lipase/Acylhydrolase family; PDB: 3SKV_B.
Probab=45.10 E-value=1.2e+02 Score=22.15 Aligned_cols=62 Identities=18% Similarity=0.346 Sum_probs=35.8
Q ss_pred EEEEEeCCCCcccHHHHHHhhhcCCEEEEEEeCC---CcccH-HHHHHHHHHHHhCCCCCCCcEEEEE
Q 029517 57 KLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAA---CPSRF-EDSKTALEKVLRNEDLQGAPLLILA 120 (192)
Q Consensus 57 ~~~i~D~~G~~~~~~~~~~~~~~~d~ii~v~D~~---~~~s~-~~~~~~~~~i~~~~~~~~~piiiv~ 120 (192)
.+.=.-.+|.-........++...++-++++|+. +.+.| +++..++..+.+.+ ++.||+++-
T Consensus 35 ~~iNLGfsG~~~le~~~a~~ia~~~a~~~~ld~~~N~~~~~~~~~~~~fv~~iR~~h--P~tPIllv~ 100 (178)
T PF14606_consen 35 DVINLGFSGNGKLEPEVADLIAEIDADLIVLDCGPNMSPEEFRERLDGFVKTIREAH--PDTPILLVS 100 (178)
T ss_dssp EEEEEE-TCCCS--HHHHHHHHHS--SEEEEEESHHCCTTTHHHHHHHHHHHHHTT---SSS-EEEEE
T ss_pred CeEeeeecCccccCHHHHHHHhcCCCCEEEEEeecCCCHHHHHHHHHHHHHHHHHhC--CCCCEEEEe
Confidence 3333456777777777778888777777777763 33445 44556666666654 579998875
Done!