Query 029517
Match_columns 192
No_of_seqs 132 out of 1445
Neff 9.7
Searched_HMMs 29240
Date Mon Mar 25 23:25:52 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029517.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/029517hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4dkx_A RAS-related protein RAB 100.0 8.3E-30 2.8E-34 190.5 10.1 144 20-175 28-177 (216)
2 1zj6_A ADP-ribosylation factor 100.0 1.6E-28 5.4E-33 179.1 15.3 168 1-176 1-180 (187)
3 1moz_A ARL1, ADP-ribosylation 100.0 3.7E-28 1.3E-32 176.1 13.5 168 1-175 1-181 (183)
4 1r8s_A ADP-ribosylation factor 100.0 5.2E-27 1.8E-31 167.1 17.9 151 13-174 12-162 (164)
5 1ksh_A ARF-like protein 2; sma 100.0 5E-27 1.7E-31 170.8 16.7 149 20-175 33-181 (186)
6 2b6h_A ADP-ribosylation factor 100.0 1.2E-27 4E-32 175.5 13.4 165 2-173 14-190 (192)
7 2x77_A ADP-ribosylation factor 100.0 1.2E-27 4.1E-32 174.6 12.6 169 1-176 3-186 (189)
8 1upt_A ARL1, ADP-ribosylation 99.9 2.4E-26 8.1E-31 164.6 17.5 151 14-175 20-170 (171)
9 1zd9_A ADP-ribosylation factor 99.9 3.5E-26 1.2E-30 166.9 17.4 151 14-174 35-185 (188)
10 1fzq_A ADP-ribosylation factor 99.9 2.8E-26 9.5E-31 166.6 16.8 148 20-174 31-178 (181)
11 2h57_A ADP-ribosylation factor 99.9 8.2E-27 2.8E-31 170.4 12.8 153 14-175 34-188 (190)
12 4bas_A ADP-ribosylation factor 99.9 1.4E-26 4.7E-31 170.0 13.7 155 14-178 30-193 (199)
13 1m2o_B GTP-binding protein SAR 99.9 2.7E-26 9.3E-31 168.0 14.9 145 20-171 38-189 (190)
14 3t1o_A Gliding protein MGLA; G 99.9 1.3E-26 4.5E-31 169.6 10.2 157 14-177 27-195 (198)
15 1f6b_A SAR1; gtpases, N-termin 99.9 5.5E-26 1.9E-30 167.4 12.5 145 20-171 40-196 (198)
16 2h17_A ADP-ribosylation factor 99.9 1.1E-25 3.9E-30 163.2 13.4 147 14-171 34-180 (181)
17 2fu5_C RAS-related protein RAB 99.9 3.8E-26 1.3E-30 165.6 9.3 151 14-180 21-177 (183)
18 2ew1_A RAS-related protein RAB 99.9 9.4E-26 3.2E-30 166.7 11.3 149 14-178 39-193 (201)
19 3kkq_A RAS-related protein M-R 99.9 2.7E-25 9.1E-30 161.1 12.1 146 14-174 31-182 (183)
20 2fn4_A P23, RAS-related protei 99.9 1.5E-25 5.1E-30 161.7 10.5 149 14-177 22-175 (181)
21 2g6b_A RAS-related protein RAB 99.9 2.7E-25 9.4E-30 160.4 11.9 148 14-176 23-176 (180)
22 2hup_A RAS-related protein RAB 99.9 4.9E-25 1.7E-29 162.6 13.1 147 14-176 42-195 (201)
23 4dsu_A GTPase KRAS, isoform 2B 99.9 5.7E-25 2E-29 159.8 13.3 150 14-178 17-170 (189)
24 3tkl_A RAS-related protein RAB 99.9 7.5E-25 2.6E-29 160.3 13.9 158 14-187 29-192 (196)
25 3t5g_A GTP-binding protein RHE 99.9 1.2E-25 4.2E-30 162.6 9.3 149 14-177 19-172 (181)
26 1r2q_A RAS-related protein RAB 99.9 5.2E-25 1.8E-29 157.2 11.4 144 14-173 19-168 (170)
27 3q72_A GTP-binding protein RAD 99.9 1E-24 3.6E-29 155.4 12.5 146 14-175 15-165 (166)
28 3oes_A GTPase rhebl1; small GT 99.9 2.6E-25 8.8E-30 163.9 9.6 150 14-178 37-191 (201)
29 3bc1_A RAS-related protein RAB 99.9 3.5E-24 1.2E-28 156.1 14.9 148 14-176 24-187 (195)
30 3lvq_E ARF-GAP with SH3 domain 99.9 1.5E-24 5.2E-29 180.2 14.7 153 14-177 335-487 (497)
31 1kao_A RAP2A; GTP-binding prot 99.9 9.6E-25 3.3E-29 155.2 11.5 146 14-174 16-166 (167)
32 3ihw_A Centg3; RAS, centaurin, 99.9 7.9E-24 2.7E-28 154.1 16.4 143 14-176 33-182 (184)
33 1u8z_A RAS-related protein RAL 99.9 2.5E-24 8.6E-29 153.2 13.5 146 14-174 17-167 (168)
34 2bov_A RAla, RAS-related prote 99.9 4.9E-24 1.7E-28 157.1 15.3 147 14-175 27-178 (206)
35 2efe_B Small GTP-binding prote 99.9 1.1E-24 3.8E-29 157.3 11.6 146 14-175 25-176 (181)
36 1z0f_A RAB14, member RAS oncog 99.9 1.3E-24 4.4E-29 156.5 11.7 145 14-174 28-178 (179)
37 2nzj_A GTP-binding protein REM 99.9 1.2E-24 4.1E-29 156.3 11.5 147 14-176 17-171 (175)
38 1x3s_A RAS-related protein RAB 99.9 3.9E-24 1.3E-28 156.2 14.3 148 14-176 28-180 (195)
39 1c1y_A RAS-related protein RAP 99.9 1.9E-24 6.4E-29 154.0 12.0 146 14-173 16-166 (167)
40 3q3j_B RHO-related GTP-binding 99.9 6.4E-25 2.2E-29 163.6 9.9 147 14-177 40-206 (214)
41 1z06_A RAS-related protein RAB 99.9 1.1E-24 3.9E-29 158.8 11.0 146 14-174 33-188 (189)
42 3q85_A GTP-binding protein REM 99.9 9.2E-25 3.2E-29 156.1 10.0 117 54-175 49-168 (169)
43 3dz8_A RAS-related protein RAB 99.9 5.7E-25 1.9E-29 160.8 8.9 148 13-176 35-188 (191)
44 2a9k_A RAS-related protein RAL 99.9 5.6E-24 1.9E-28 154.2 13.7 148 14-176 31-183 (187)
45 2bme_A RAB4A, RAS-related prot 99.9 7.3E-24 2.5E-28 153.8 14.3 148 14-177 23-176 (186)
46 2yc2_C IFT27, small RAB-relate 99.9 1.3E-24 4.6E-29 160.2 10.4 152 13-177 32-195 (208)
47 1zbd_A Rabphilin-3A; G protein 99.9 7.3E-24 2.5E-28 156.1 14.3 147 14-176 21-173 (203)
48 3o47_A ADP-ribosylation factor 99.9 4.9E-24 1.7E-28 168.6 13.8 136 40-175 193-328 (329)
49 2bcg_Y Protein YP2, GTP-bindin 99.9 4.3E-24 1.5E-28 157.8 12.6 151 14-180 21-177 (206)
50 2f7s_A C25KG, RAS-related prot 99.9 2.6E-24 9E-29 160.1 11.3 149 14-177 38-202 (217)
51 2a5j_A RAS-related protein RAB 99.9 1.9E-24 6.4E-29 158.0 10.1 147 14-176 34-186 (191)
52 3con_A GTPase NRAS; structural 99.9 6.2E-24 2.1E-28 154.9 12.7 148 14-176 34-185 (190)
53 3tw8_B RAS-related protein RAB 99.9 3.6E-24 1.2E-28 154.4 11.3 150 14-180 22-177 (181)
54 3reg_A RHO-like small GTPase; 99.9 2.6E-24 9E-29 157.5 10.6 137 34-177 46-191 (194)
55 2oil_A CATX-8, RAS-related pro 99.9 6.9E-24 2.4E-28 155.1 12.8 147 14-176 38-190 (193)
56 2iwr_A Centaurin gamma 1; ANK 99.9 1.6E-23 5.5E-28 151.0 14.3 145 14-178 20-173 (178)
57 1g16_A RAS-related protein SEC 99.9 9.7E-25 3.3E-29 155.9 7.7 147 14-176 16-167 (170)
58 1wms_A RAB-9, RAB9, RAS-relate 99.9 1.6E-23 5.4E-28 150.8 14.0 148 14-175 20-175 (177)
59 2gf0_A GTP-binding protein DI- 99.9 3E-24 1E-28 157.4 10.4 148 14-176 21-173 (199)
60 2il1_A RAB12; G-protein, GDP, 99.9 1.1E-23 3.6E-28 154.3 13.1 146 14-174 39-190 (192)
61 2y8e_A RAB-protein 6, GH09086P 99.9 2E-24 7E-29 155.5 8.8 144 14-173 27-176 (179)
62 2fg5_A RAB-22B, RAS-related pr 99.9 1.7E-23 5.7E-28 153.1 13.8 145 14-174 36-186 (192)
63 2p5s_A RAS and EF-hand domain 99.9 6.1E-24 2.1E-28 156.3 11.3 135 34-174 51-197 (199)
64 2atv_A RERG, RAS-like estrogen 99.9 8.4E-24 2.9E-28 155.1 11.9 136 34-175 51-192 (196)
65 1z08_A RAS-related protein RAB 99.9 3.7E-24 1.2E-28 153.0 9.8 145 14-174 19-169 (170)
66 1ek0_A Protein (GTP-binding pr 99.9 7.6E-24 2.6E-28 151.1 11.4 143 14-172 16-167 (170)
67 2o52_A RAS-related protein RAB 99.9 1.4E-24 4.6E-29 160.1 7.6 149 14-178 38-192 (200)
68 3clv_A RAB5 protein, putative; 99.9 4.3E-23 1.5E-27 151.3 15.6 112 56-175 93-205 (208)
69 3cbq_A GTP-binding protein REM 99.9 1.2E-23 4.1E-28 154.6 12.0 119 53-176 69-190 (195)
70 1z0j_A RAB-22, RAS-related pro 99.9 1.7E-23 5.7E-28 149.5 12.5 144 14-173 19-168 (170)
71 2gf9_A RAS-related protein RAB 99.9 8.2E-24 2.8E-28 154.3 11.0 146 14-175 35-186 (189)
72 2erx_A GTP-binding protein DI- 99.9 6.2E-24 2.1E-28 151.8 9.9 146 14-174 16-167 (172)
73 2atx_A Small GTP binding prote 99.9 8.9E-24 3.1E-28 154.6 10.8 144 14-174 31-193 (194)
74 2hxs_A RAB-26, RAS-related pro 99.9 8.4E-24 2.9E-28 152.3 10.5 148 14-176 19-175 (178)
75 3c5c_A RAS-like protein 12; GD 99.9 4.6E-24 1.6E-28 155.7 8.8 145 14-174 34-186 (187)
76 2ce2_X GTPase HRAS; signaling 99.9 5.7E-23 1.9E-27 145.7 14.3 146 14-174 16-165 (166)
77 3cpj_B GTP-binding protein YPT 99.9 9.4E-24 3.2E-28 158.1 10.7 152 14-181 26-183 (223)
78 2q3h_A RAS homolog gene family 99.9 5.9E-24 2E-28 156.4 9.2 147 14-177 33-198 (201)
79 2g3y_A GTP-binding protein GEM 99.9 7.3E-24 2.5E-28 157.7 9.6 118 53-175 84-204 (211)
80 2j0v_A RAC-like GTP-binding pr 99.9 5.4E-24 1.8E-28 157.9 8.6 148 14-178 22-184 (212)
81 3cph_A RAS-related protein SEC 99.9 2.4E-23 8.3E-28 154.2 12.1 148 14-177 33-185 (213)
82 1z2a_A RAS-related protein RAB 99.9 1.4E-23 4.8E-28 149.6 9.9 144 14-174 18-167 (168)
83 2j1l_A RHO-related GTP-binding 99.9 1.8E-23 6.1E-28 155.7 10.7 147 14-177 47-212 (214)
84 2fv8_A H6, RHO-related GTP-bin 99.9 1.5E-23 5E-28 155.3 9.9 146 14-176 38-202 (207)
85 1ky3_A GTP-binding protein YPT 99.9 4.8E-23 1.6E-27 148.6 12.0 148 14-175 21-179 (182)
86 1m7b_A RND3/RHOE small GTP-bin 99.9 1.2E-23 4.2E-28 152.8 8.9 144 14-174 20-183 (184)
87 1cip_A Protein (guanine nucleo 99.9 1.8E-23 6.2E-28 166.3 10.5 172 2-175 123-345 (353)
88 1mh1_A RAC1; GTP-binding, GTPa 99.9 2.2E-23 7.4E-28 151.0 9.2 146 14-176 18-182 (186)
89 3gj0_A GTP-binding nuclear pro 99.9 3E-24 1E-28 160.4 4.8 147 14-177 28-178 (221)
90 1vg8_A RAS-related protein RAB 99.9 3.4E-23 1.2E-27 152.8 10.3 150 14-177 21-178 (207)
91 2gco_A H9, RHO-related GTP-bin 99.9 5.5E-23 1.9E-27 151.5 10.8 144 14-174 38-200 (201)
92 4djt_A GTP-binding nuclear pro 99.9 5.8E-23 2E-27 152.9 10.7 138 34-177 34-178 (218)
93 1gwn_A RHO-related GTP-binding 99.9 2.8E-23 9.7E-28 153.8 8.7 144 14-174 41-204 (205)
94 2cjw_A GTP-binding protein GEM 99.9 7.4E-23 2.5E-27 150.0 10.0 149 13-175 18-173 (192)
95 3bwd_D RAC-like GTP-binding pr 99.9 1.7E-23 5.9E-28 151.2 6.3 143 14-173 21-180 (182)
96 3r7w_B Gtpase2, GTP-binding pr 99.9 2.1E-23 7.2E-28 163.3 6.3 132 39-175 30-175 (331)
97 4gzl_A RAS-related C3 botulinu 99.9 1.7E-22 5.9E-27 149.2 9.0 133 34-172 53-203 (204)
98 2zej_A Dardarin, leucine-rich 99.9 5.2E-23 1.8E-27 149.6 5.6 149 14-177 15-181 (184)
99 3l0i_B RAS-related protein RAB 99.9 2.5E-24 8.7E-29 158.3 -1.9 145 14-174 46-196 (199)
100 3th5_A RAS-related C3 botulinu 99.8 1.1E-23 3.8E-28 155.4 0.0 142 14-172 43-203 (204)
101 3ohm_A Guanine nucleotide-bind 99.9 1.4E-21 4.8E-26 153.5 10.8 136 40-175 151-319 (327)
102 3llu_A RAS-related GTP-binding 99.9 4.1E-22 1.4E-26 146.3 6.6 116 53-172 66-195 (196)
103 2fh5_B SR-beta, signal recogni 99.9 2.9E-20 1E-24 137.9 15.6 147 14-171 20-213 (214)
104 1zcb_A G alpha I/13; GTP-bindi 99.8 2.5E-21 8.5E-26 154.5 9.5 136 40-175 185-354 (362)
105 3r7w_A Gtpase1, GTP-binding pr 99.8 2.8E-21 9.7E-26 151.4 8.2 148 13-173 15-180 (307)
106 2wkq_A NPH1-1, RAS-related C3 99.8 8.2E-21 2.8E-25 149.5 10.7 142 20-174 170-330 (332)
107 2qu8_A Putative nucleolar GTP- 99.8 4.2E-20 1.4E-24 138.6 13.3 154 14-182 42-213 (228)
108 4fid_A G protein alpha subunit 99.8 1.4E-20 4.8E-25 148.4 10.6 135 40-174 145-328 (340)
109 3c5h_A Glucocorticoid receptor 99.8 2.8E-22 9.5E-27 153.2 -0.6 118 52-173 91-254 (255)
110 1azs_C GS-alpha; complex (lyas 99.8 6.1E-21 2.1E-25 153.6 7.0 135 41-175 202-386 (402)
111 2dyk_A GTP-binding protein; GT 99.8 2.7E-20 9.2E-25 131.7 8.8 139 14-172 14-160 (161)
112 2f9l_A RAB11B, member RAS onco 99.8 6.8E-20 2.3E-24 134.6 11.2 146 14-175 18-169 (199)
113 2gj8_A MNME, tRNA modification 99.8 2.4E-20 8.2E-25 134.2 7.4 141 14-173 17-165 (172)
114 2lkc_A Translation initiation 99.8 1.8E-19 6.2E-24 129.5 11.4 148 14-177 21-174 (178)
115 1svi_A GTP-binding protein YSX 99.8 7.7E-20 2.6E-24 133.5 8.7 108 57-173 70-194 (195)
116 2xtz_A Guanine nucleotide-bind 99.8 1E-20 3.4E-25 150.5 4.1 135 41-175 162-346 (354)
117 3iev_A GTP-binding protein ERA 99.8 1.5E-19 5.1E-24 141.6 10.7 148 13-174 22-182 (308)
118 2wji_A Ferrous iron transport 99.8 2.9E-19 9.8E-24 127.5 10.1 136 14-172 16-163 (165)
119 1xzp_A Probable tRNA modificat 99.8 4.2E-18 1.4E-22 140.5 16.2 141 13-173 255-404 (482)
120 1oix_A RAS-related protein RAB 99.8 1.1E-18 3.7E-23 127.5 11.2 143 14-172 42-190 (191)
121 2cxx_A Probable GTP-binding pr 99.8 1.3E-19 4.6E-24 131.5 6.1 152 14-178 14-188 (190)
122 4dhe_A Probable GTP-binding pr 99.8 3.4E-19 1.1E-23 132.9 7.6 152 14-176 42-213 (223)
123 1mky_A Probable GTP-binding pr 99.8 1E-18 3.5E-23 143.1 10.8 144 13-175 13-167 (439)
124 3pqc_A Probable GTP-binding pr 99.8 4.8E-19 1.6E-23 128.9 7.5 109 55-174 67-194 (195)
125 3dpu_A RAB family protein; roc 99.8 4.8E-19 1.7E-23 148.3 8.0 133 34-176 64-210 (535)
126 3gee_A MNME, tRNA modification 99.8 6.3E-19 2.2E-23 145.2 8.4 144 14-173 246-397 (476)
127 2wjg_A FEOB, ferrous iron tran 99.8 5.4E-19 1.8E-23 128.3 6.7 140 14-176 20-171 (188)
128 1wf3_A GTP-binding protein; GT 99.8 3.5E-18 1.2E-22 133.4 10.9 142 14-173 20-172 (301)
129 4dcu_A GTP-binding protein ENG 99.8 1.1E-18 3.9E-23 143.4 8.3 151 14-176 208-371 (456)
130 1u0l_A Probable GTPase ENGC; p 99.8 3.1E-19 1E-23 139.4 4.6 127 34-170 40-169 (301)
131 2hjg_A GTP-binding protein ENG 99.8 1.1E-18 3.9E-23 142.7 7.5 150 14-175 188-350 (436)
132 3a1s_A Iron(II) transport prot 99.8 3.3E-18 1.1E-22 130.8 9.4 137 14-173 18-166 (258)
133 3iby_A Ferrous iron transport 99.7 2E-18 6.7E-23 131.9 7.7 136 13-171 13-164 (256)
134 1s0u_A EIF-2-gamma, translatio 99.7 6.3E-18 2.2E-22 137.2 10.9 114 56-174 81-198 (408)
135 3l82_B F-box only protein 4; T 99.7 6.1E-18 2.1E-22 123.6 8.0 112 62-175 108-224 (227)
136 3qq5_A Small GTP-binding prote 99.7 2.1E-18 7.1E-23 140.1 6.1 144 13-175 46-197 (423)
137 2e87_A Hypothetical protein PH 99.7 8.8E-18 3E-22 134.1 9.4 128 41-175 199-337 (357)
138 3cb4_D GTP-binding protein LEP 99.7 4.3E-17 1.5E-21 137.4 13.9 111 55-175 70-183 (599)
139 1lnz_A SPO0B-associated GTP-bi 99.7 7.8E-18 2.7E-22 133.4 8.4 150 14-177 171-333 (342)
140 1kk1_A EIF2gamma; initiation o 99.7 1E-17 3.5E-22 136.0 9.1 114 56-174 83-200 (410)
141 3b1v_A Ferrous iron uptake tra 99.7 5.6E-18 1.9E-22 130.5 7.1 138 14-173 16-163 (272)
142 3i8s_A Ferrous iron transport 99.7 1.9E-18 6.4E-23 133.3 4.4 139 13-174 15-169 (274)
143 1nrj_B SR-beta, signal recogni 99.7 5.7E-19 1.9E-23 131.3 1.3 135 14-160 25-170 (218)
144 2ywe_A GTP-binding protein LEP 99.7 6E-17 2.1E-21 136.4 13.6 113 55-175 72-185 (600)
145 2hjg_A GTP-binding protein ENG 99.7 1.4E-18 4.7E-23 142.2 3.6 142 13-174 15-165 (436)
146 3sjy_A Translation initiation 99.7 2.7E-17 9.1E-22 133.3 9.8 116 55-175 74-193 (403)
147 3geh_A MNME, tRNA modification 99.7 8.5E-18 2.9E-22 138.1 6.9 142 13-175 236-385 (462)
148 3k53_A Ferrous iron transport 99.7 2.6E-17 8.7E-22 126.7 9.2 140 14-175 16-167 (271)
149 1wb1_A Translation elongation 99.7 2.2E-17 7.6E-22 136.5 8.2 151 14-173 32-188 (482)
150 1zun_B Sulfate adenylate trans 99.7 9.9E-17 3.4E-21 131.1 11.7 122 41-166 89-216 (434)
151 3j2k_7 ERF3, eukaryotic polype 99.7 2.9E-16 9.9E-21 128.5 13.9 122 41-166 80-217 (439)
152 2elf_A Protein translation elo 99.7 6.7E-17 2.3E-21 129.4 9.2 137 14-175 34-181 (370)
153 3p26_A Elongation factor 1 alp 99.7 4.5E-16 1.5E-20 128.8 12.4 121 41-164 96-228 (483)
154 3tr5_A RF-3, peptide chain rel 99.7 1.2E-16 4E-21 133.3 8.9 82 42-128 68-149 (528)
155 1g7s_A Translation initiation 99.7 1.2E-16 4E-21 134.9 8.5 147 14-174 18-218 (594)
156 1jny_A EF-1-alpha, elongation 99.7 6.2E-17 2.1E-21 132.4 6.3 122 41-166 69-205 (435)
157 3l2o_B F-box only protein 4; s 99.7 1.3E-16 4.5E-21 121.9 7.3 111 62-174 193-308 (312)
158 1mky_A Probable GTP-binding pr 99.7 3.5E-16 1.2E-20 128.1 9.8 150 14-175 193-356 (439)
159 1d2e_A Elongation factor TU (E 99.7 2.3E-16 7.9E-21 127.6 8.3 156 14-174 16-195 (397)
160 3izy_P Translation initiation 99.6 2.3E-17 7.8E-22 137.4 2.3 148 13-173 16-167 (537)
161 1ega_A Protein (GTP-binding pr 99.6 1.6E-16 5.4E-21 124.1 6.3 142 14-173 21-174 (301)
162 4dcu_A GTP-binding protein ENG 99.6 5.7E-17 2E-21 133.3 3.9 142 14-174 36-185 (456)
163 2c78_A Elongation factor TU-A; 99.6 1.5E-15 5.1E-20 123.1 11.0 153 14-173 24-211 (405)
164 1zo1_I IF2, translation initia 99.6 1.3E-16 4.6E-21 131.7 2.8 141 13-170 16-163 (501)
165 1r5b_A Eukaryotic peptide chai 99.6 5.2E-17 1.8E-21 133.9 0.4 122 40-165 105-243 (467)
166 2qtf_A Protein HFLX, GTP-bindi 99.6 1.1E-14 3.9E-19 116.3 13.5 150 14-176 192-356 (364)
167 2ged_A SR-beta, signal recogni 99.6 3.1E-16 1.1E-20 114.1 2.3 113 14-138 61-181 (193)
168 2xtp_A GTPase IMAP family memb 99.6 6.5E-15 2.2E-19 112.4 9.7 144 14-174 35-208 (260)
169 3t5d_A Septin-7; GTP-binding p 99.6 2.6E-15 9E-20 115.6 6.3 148 14-173 21-203 (274)
170 1f60_A Elongation factor EEF1A 99.6 5.1E-15 1.7E-19 121.7 8.4 120 41-164 70-202 (458)
171 3avx_A Elongation factor TS, e 99.6 8.7E-15 3E-19 129.7 9.2 155 14-173 309-485 (1289)
172 2aka_B Dynamin-1; fusion prote 99.5 7.2E-15 2.4E-19 114.1 7.4 112 55-172 124-251 (299)
173 1dar_A EF-G, elongation factor 99.5 9.5E-14 3.3E-18 119.3 15.0 110 14-128 25-144 (691)
174 2dy1_A Elongation factor G; tr 99.5 1.4E-13 4.7E-18 117.8 14.8 108 14-126 22-139 (665)
175 3izq_1 HBS1P, elongation facto 99.5 1.8E-15 6.3E-20 128.1 2.9 122 41-165 230-363 (611)
176 3lxx_A GTPase IMAP family memb 99.5 3.8E-14 1.3E-18 106.9 8.9 149 14-175 42-215 (239)
177 3mca_A HBS1, elongation factor 99.5 1.1E-15 3.7E-20 129.1 0.3 145 14-162 190-371 (592)
178 3lxw_A GTPase IMAP family memb 99.5 2.5E-14 8.5E-19 108.6 7.7 149 14-175 34-209 (247)
179 2qag_A Septin-2, protein NEDD5 99.5 4.3E-15 1.5E-19 118.7 2.2 124 41-176 76-235 (361)
180 2h5e_A Peptide chain release f 99.5 3.4E-14 1.2E-18 118.5 7.2 115 43-165 69-186 (529)
181 2rdo_7 EF-G, elongation factor 99.5 4.9E-13 1.7E-17 115.1 14.2 109 14-127 23-148 (704)
182 2xex_A Elongation factor G; GT 99.5 4.8E-13 1.6E-17 115.0 14.0 111 13-128 22-142 (693)
183 1udx_A The GTP-binding protein 99.5 2.4E-13 8.4E-18 110.1 10.8 150 14-177 170-328 (416)
184 2j69_A Bacterial dynamin-like 99.4 9.5E-13 3.3E-17 113.2 10.6 117 56-176 174-327 (695)
185 2yv5_A YJEQ protein; hydrolase 99.4 1.3E-13 4.5E-18 107.5 4.6 96 66-170 66-165 (302)
186 3vqt_A RF-3, peptide chain rel 99.4 3.7E-12 1.3E-16 106.7 12.3 83 41-128 85-167 (548)
187 1jwy_B Dynamin A GTPase domain 99.4 2.1E-12 7.1E-17 101.0 10.0 115 55-175 130-263 (315)
188 1pui_A ENGB, probable GTP-bind 99.3 1.4E-12 4.9E-17 95.9 7.0 110 57-174 73-199 (210)
189 3def_A T7I23.11 protein; chlor 99.3 7.8E-12 2.7E-16 95.5 8.3 104 14-126 49-164 (262)
190 1wxq_A GTP-binding protein; st 99.3 1.4E-13 4.8E-18 111.1 -1.7 76 13-92 12-114 (397)
191 3t34_A Dynamin-related protein 99.3 6.5E-12 2.2E-16 100.2 6.7 107 55-169 135-256 (360)
192 1n0u_A EF-2, elongation factor 99.3 1.6E-11 5.4E-16 107.6 9.2 108 14-126 32-163 (842)
193 2x2e_A Dynamin-1; nitration, h 99.3 2.3E-12 8E-17 102.5 3.6 111 55-170 129-254 (353)
194 3p32_A Probable GTPase RV1496/ 99.2 1.5E-12 5E-17 103.8 1.3 109 54-174 170-284 (355)
195 1h65_A Chloroplast outer envel 99.2 1.4E-10 4.7E-15 88.9 10.0 106 14-127 52-168 (270)
196 2qnr_A Septin-2, protein NEDD5 99.2 6.1E-12 2.1E-16 98.0 1.7 110 55-176 75-216 (301)
197 1jal_A YCHF protein; nucleotid 99.1 4.8E-10 1.7E-14 89.1 12.0 71 13-91 14-108 (363)
198 3j25_A Tetracycline resistance 99.1 8.5E-11 2.9E-15 100.2 8.0 156 14-174 15-239 (638)
199 1yrb_A ATP(GTP)binding protein 99.1 4.4E-11 1.5E-15 90.9 4.3 116 55-174 108-257 (262)
200 2dby_A GTP-binding protein; GD 99.1 8.1E-10 2.8E-14 88.2 10.8 75 13-91 13-111 (368)
201 4fn5_A EF-G 1, elongation fact 99.1 2.8E-09 9.6E-14 91.9 14.5 68 55-127 84-151 (709)
202 2qpt_A EH domain-containing pr 99.1 1.4E-10 4.7E-15 97.3 6.1 67 57-127 155-232 (550)
203 2p67_A LAO/AO transport system 99.0 8.9E-11 3E-15 93.0 3.9 108 54-173 147-260 (341)
204 4a9a_A Ribosome-interacting GT 99.0 1.3E-09 4.5E-14 87.1 10.5 102 14-125 85-194 (376)
205 1puj_A YLQF, conserved hypothe 99.0 4.4E-10 1.5E-14 86.7 6.3 104 60-175 3-107 (282)
206 3h2y_A GTPase family protein; 99.0 4.6E-10 1.6E-14 89.8 6.6 100 65-172 55-158 (368)
207 2wsm_A Hydrogenase expression/ 99.0 5.4E-11 1.8E-15 88.1 1.0 107 54-175 107-215 (221)
208 2www_A Methylmalonic aciduria 99.0 1E-09 3.4E-14 87.2 7.3 108 54-173 165-278 (349)
209 3ec1_A YQEH GTPase; atnos1, at 98.9 1.6E-09 5.3E-14 86.7 6.7 100 65-172 57-160 (369)
210 2qag_C Septin-7; cell cycle, c 98.9 1.5E-10 5.2E-15 93.8 -0.1 108 55-173 87-226 (418)
211 3zvr_A Dynamin-1; hydrolase, D 98.7 3.8E-08 1.3E-12 84.9 7.9 111 56-171 150-275 (772)
212 2hf9_A Probable hydrogenase ni 98.6 1.1E-10 3.7E-15 86.8 -9.1 59 113-174 164-224 (226)
213 3cnl_A YLQF, putative uncharac 98.5 1.3E-08 4.4E-13 77.7 0.6 93 63-170 4-97 (262)
214 1ni3_A YCHF GTPase, YCHF GTP-b 98.2 2.4E-05 8.2E-10 62.8 12.9 73 14-91 33-127 (392)
215 2qm8_A GTPase/ATPase; G protei 98.2 5.3E-06 1.8E-10 65.4 7.8 108 54-173 146-260 (337)
216 1t9h_A YLOQ, probable GTPase E 98.2 5.3E-07 1.8E-11 70.1 2.0 84 75-167 82-170 (307)
217 2ohf_A Protein OLA1, GTP-bindi 98.1 2.1E-06 7.2E-11 68.9 4.9 74 13-94 34-131 (396)
218 2rcn_A Probable GTPase ENGC; Y 98.1 5.6E-06 1.9E-10 65.7 6.3 86 77-168 128-213 (358)
219 2j37_W Signal recognition part 97.8 5.1E-05 1.8E-09 62.8 7.6 110 54-171 182-310 (504)
220 3ec1_A YQEH GTPase; atnos1, at 97.4 4.1E-06 1.4E-10 66.9 -4.4 113 14-136 175-297 (369)
221 3h2y_A GTPase family protein; 97.3 6.9E-06 2.4E-10 65.5 -4.1 117 13-138 172-298 (368)
222 2qag_B Septin-6, protein NEDD5 96.8 0.0011 3.9E-08 53.6 4.5 41 112-155 175-217 (427)
223 3dm5_A SRP54, signal recogniti 95.9 0.023 7.7E-07 46.3 7.3 94 55-164 182-281 (443)
224 3sop_A Neuronal-specific septi 95.6 0.039 1.3E-06 41.8 7.2 42 80-127 112-154 (270)
225 2v3c_C SRP54, signal recogniti 95.5 0.02 6.8E-07 46.5 5.3 66 54-127 179-252 (432)
226 1tq4_A IIGP1, interferon-induc 95.4 0.034 1.2E-06 44.9 6.3 113 57-176 121-255 (413)
227 1j8m_F SRP54, signal recogniti 95.2 0.048 1.6E-06 41.9 6.6 94 54-164 179-281 (297)
228 4dzz_A Plasmid partitioning pr 95.2 0.068 2.3E-06 38.1 7.1 68 55-126 75-143 (206)
229 3ea0_A ATPase, para family; al 94.7 0.18 6E-06 37.0 8.3 81 55-139 118-198 (245)
230 3cwq_A Para family chromosome 94.4 0.097 3.3E-06 37.8 6.1 68 54-127 66-134 (209)
231 2ph1_A Nucleotide-binding prot 93.8 0.37 1.3E-05 35.9 8.5 67 54-125 127-194 (262)
232 3kl4_A SRP54, signal recogniti 93.7 0.084 2.9E-06 42.8 4.9 92 55-162 179-278 (433)
233 3k9g_A PF-32 protein; ssgcid, 93.5 0.32 1.1E-05 36.2 7.8 65 55-124 144-208 (267)
234 3cnl_A YLQF, putative uncharac 92.9 0.017 5.7E-07 43.7 -0.3 45 13-67 111-155 (262)
235 3end_A Light-independent proto 92.7 0.24 8.3E-06 37.8 6.2 69 55-125 156-225 (307)
236 1g3q_A MIND ATPase, cell divis 92.5 1.1 3.9E-05 32.4 9.3 79 55-139 111-190 (237)
237 1puj_A YLQF, conserved hypothe 92.4 0.021 7.2E-07 43.6 -0.4 45 13-67 132-176 (282)
238 1wcv_1 SOJ, segregation protei 90.8 0.64 2.2E-05 34.4 6.4 70 54-127 110-183 (257)
239 1hyq_A MIND, cell division inh 90.7 0.42 1.4E-05 35.4 5.4 66 55-126 110-175 (263)
240 3kjh_A CO dehydrogenase/acetyl 90.7 0.32 1.1E-05 35.5 4.6 78 54-139 130-207 (254)
241 3q9l_A Septum site-determining 89.1 0.65 2.2E-05 34.2 5.2 82 55-139 113-204 (260)
242 3bfv_A CAPA1, CAPB2, membrane 88.9 1.5 5.2E-05 32.9 7.2 66 55-126 191-257 (271)
243 3la6_A Tyrosine-protein kinase 88.8 1.7 6E-05 32.9 7.5 68 55-127 201-268 (286)
244 1f5n_A Interferon-induced guan 86.6 0.31 1E-05 41.2 2.3 49 14-67 51-102 (592)
245 2oze_A ORF delta'; para, walke 86.1 1.9 6.4E-05 32.5 6.3 70 55-127 154-226 (298)
246 2xxa_A Signal recognition part 83.3 2.8 9.5E-05 33.9 6.4 66 54-127 182-254 (433)
247 3pg5_A Uncharacterized protein 80.2 4.6 0.00016 31.6 6.5 42 55-99 153-194 (361)
248 1cp2_A CP2, nitrogenase iron p 79.5 2.3 8E-05 31.4 4.5 70 55-125 115-186 (269)
249 3cio_A ETK, tyrosine-protein k 78.2 5.2 0.00018 30.4 6.1 66 55-126 213-279 (299)
250 3szr_A Interferon-induced GTP- 77.3 1.4 4.6E-05 37.3 2.8 69 56-128 147-229 (608)
251 2xj4_A MIPZ; replication, cell 75.3 0.85 2.9E-05 34.4 0.9 34 55-90 103-136 (286)
252 3q5d_A Atlastin-1; G protein, 75.1 1.5 5E-05 35.7 2.3 54 14-68 80-152 (447)
253 3ez9_A Para; DNA binding, wing 73.9 6.6 0.00023 31.0 5.9 69 55-125 247-322 (403)
254 2ffh_A Protein (FFH); SRP54, s 72.1 6.5 0.00022 31.7 5.4 67 54-127 179-251 (425)
255 2afh_E Nitrogenase iron protei 71.6 4.8 0.00017 30.1 4.4 70 55-125 118-189 (289)
256 1zu4_A FTSY; GTPase, signal re 70.5 13 0.00044 28.6 6.6 67 54-127 190-268 (320)
257 1vma_A Cell division protein F 64.7 17 0.00059 27.7 6.2 67 54-127 185-263 (306)
258 1ls1_A Signal recognition part 58.4 21 0.0007 27.0 5.7 67 54-127 179-251 (295)
259 3e70_C DPA, signal recognition 56.8 13 0.00044 28.7 4.3 94 55-164 211-310 (328)
260 3pzx_A Formate--tetrahydrofola 55.9 23 0.00078 29.3 5.6 58 112-174 373-430 (557)
261 1byi_A Dethiobiotin synthase; 55.5 49 0.0017 23.1 7.1 67 55-126 108-180 (224)
262 3u7r_A NADPH-dependent FMN red 53.8 20 0.0007 25.2 4.6 52 72-123 60-114 (190)
263 2px0_A Flagellar biosynthesis 52.6 18 0.00062 27.3 4.5 67 54-127 181-253 (296)
264 3ez2_A Plasmid partition prote 52.4 27 0.00091 27.4 5.6 34 55-90 244-277 (398)
265 2q62_A ARSH; alpha/beta, flavo 47.4 67 0.0023 23.5 6.8 52 72-123 91-146 (247)
266 1bif_A 6-phosphofructo-2-kinas 47.0 21 0.00072 28.9 4.3 51 56-107 87-147 (469)
267 2h5e_A Peptide chain release f 44.3 13 0.00044 30.8 2.6 31 146-176 250-280 (529)
268 4hs4_A Chromate reductase; tri 43.3 74 0.0025 22.3 6.3 52 72-123 66-119 (199)
269 3do6_A Formate--tetrahydrofola 41.3 34 0.0012 28.2 4.5 86 79-173 310-417 (543)
270 4ici_A Putative flavoprotein; 41.3 82 0.0028 21.4 7.9 84 76-170 84-167 (171)
271 3fvw_A Putative NAD(P)H-depend 40.0 67 0.0023 22.3 5.6 53 72-124 60-121 (192)
272 2woj_A ATPase GET3; tail-ancho 39.0 63 0.0021 25.0 5.7 42 79-124 234-275 (354)
273 3k1y_A Oxidoreductase; structu 38.6 78 0.0027 22.1 5.7 50 72-122 78-127 (191)
274 3fwy_A Light-independent proto 38.3 86 0.0029 23.8 6.3 70 55-126 163-233 (314)
275 2yhs_A FTSY, cell division pro 37.6 55 0.0019 26.9 5.3 67 54-127 374-452 (503)
276 1rtt_A Conserved hypothetical 36.3 52 0.0018 22.6 4.5 50 74-123 67-118 (193)
277 3lcm_A SMU.1420, putative oxid 35.5 89 0.003 21.7 5.7 52 73-124 67-130 (196)
278 2amj_A Modulator of drug activ 34.1 1.2E+02 0.0041 21.2 7.8 49 57-106 49-97 (204)
279 3ha2_A NADPH-quinone reductase 33.9 1.1E+02 0.0039 20.9 7.9 65 59-124 32-103 (177)
280 3svl_A Protein YIEF; E. coli C 33.2 1.2E+02 0.0041 21.0 6.5 51 73-123 66-118 (193)
281 3qk7_A Transcriptional regulat 32.4 1.2E+02 0.0039 22.1 6.1 60 55-125 40-100 (294)
282 3fkq_A NTRC-like two-domain pr 32.2 54 0.0018 25.5 4.4 35 54-90 258-292 (373)
283 2ark_A Flavodoxin; FMN, struct 32.2 1.2E+02 0.0041 20.6 8.1 63 56-124 35-99 (188)
284 3gv0_A Transcriptional regulat 31.8 77 0.0026 23.0 5.0 60 55-125 40-101 (288)
285 1s2d_A Purine trans deoxyribos 30.9 1.3E+02 0.0044 20.6 5.7 39 76-120 78-116 (167)
286 3ug7_A Arsenical pump-driving 30.8 1.8E+02 0.0061 22.3 7.8 82 80-172 237-332 (349)
287 3f2v_A General stress protein 30.5 1.3E+02 0.0046 20.9 5.9 51 74-124 53-111 (192)
288 3hyn_A Putative signal transdu 30.5 1.4E+02 0.0047 21.1 5.7 60 59-122 58-118 (189)
289 2nx2_A Hypothetical protein YP 30.1 80 0.0027 21.9 4.5 18 74-91 125-142 (181)
290 2vzf_A NADH-dependent FMN redu 29.5 1.4E+02 0.0047 20.5 6.1 47 74-121 64-110 (197)
291 1d4a_A DT-diaphorase, quinone 27.9 1E+02 0.0035 22.7 5.1 49 76-124 90-150 (273)
292 1t5b_A Acyl carrier protein ph 27.8 1.2E+02 0.0042 20.5 5.3 50 74-123 81-142 (201)
293 1t0i_A YLR011WP; FMN binding p 25.5 1.4E+02 0.0049 20.2 5.3 48 72-121 77-124 (191)
294 1sqs_A Conserved hypothetical 25.1 1.9E+02 0.0064 20.6 6.0 51 73-123 73-126 (242)
295 3r6w_A FMN-dependent NADH-azor 23.9 1.7E+02 0.0057 20.4 5.4 50 74-123 82-147 (212)
296 3tem_A Ribosyldihydronicotinam 23.7 2E+02 0.0069 20.5 6.2 52 74-125 87-150 (228)
297 1eiw_A Hypothetical protein MT 23.2 1.1E+02 0.0038 19.4 3.9 43 75-122 34-76 (111)
298 1vf6_A PALS-1, PALS1-associate 23.2 40 0.0014 20.2 1.6 17 7-23 29-45 (83)
299 2khz_A C-MYC-responsive protei 22.5 1.3E+02 0.0043 20.4 4.4 42 75-124 73-114 (165)
300 2hpv_A FMN-dependent NADH-azor 22.3 1.9E+02 0.0067 19.8 6.1 49 75-123 90-150 (208)
301 3v7e_A Ribosome-associated pro 22.3 77 0.0026 18.7 2.9 47 73-125 19-65 (82)
302 3jy6_A Transcriptional regulat 22.2 1.5E+02 0.0052 21.1 5.1 59 55-125 37-97 (276)
303 1rli_A Trp repressor binding p 21.9 1.4E+02 0.0047 20.0 4.6 50 74-123 66-125 (184)
304 1f8y_A Nucleoside 2-deoxyribos 21.8 1.4E+02 0.0047 20.2 4.4 43 75-123 74-116 (157)
305 3ehd_A Uncharacterized conserv 21.2 1.9E+02 0.0064 19.7 5.0 43 75-123 65-107 (162)
306 3hcw_A Maltose operon transcri 20.5 1.1E+02 0.0038 22.2 4.1 60 55-125 42-103 (295)
307 2fz5_A Flavodoxin; alpha/beta 20.5 1.2E+02 0.0041 19.0 3.8 47 76-124 43-91 (137)
308 1rj9_A FTSY, signal recognitio 20.3 2.8E+02 0.0095 20.8 7.1 66 55-127 184-261 (304)
309 2f62_A Nucleoside 2-deoxyribos 20.2 1.3E+02 0.0044 20.5 4.0 44 74-123 62-108 (161)
No 1
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=99.96 E-value=8.3e-30 Score=190.47 Aligned_cols=144 Identities=22% Similarity=0.368 Sum_probs=113.6
Q ss_pred HHHHHHhhhhccCCCCCCCCCCCCcceEEEE----EEecCEEEEEEeCCCCcccHHHHHHhhhcCCEEEEEEeCCCcccH
Q 029517 20 TLLEKLKSVYSNVEGLPPDRIVPTVGLNIGR----IEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRF 95 (192)
Q Consensus 20 ~l~~~~~~~~~~~~~~~~~~~~~T~g~~~~~----~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ii~v~D~~~~~s~ 95 (192)
+|++|+.. +.|...|.||+|.++.. +....++++||||+|+++|..++..|+++++++++|||+++.++|
T Consensus 28 sLi~r~~~------~~f~~~~~~Tig~d~~~k~~~~~~~~v~l~iwDtaGqe~~~~l~~~~~~~a~~~ilv~di~~~~Sf 101 (216)
T 4dkx_A 28 SLITRFMY------DSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGLERFRSLIPSYIRDSAAAVVVYDITNVNSF 101 (216)
T ss_dssp HHHHHHHH------SCCC----------CEEEEEECSSCEEEEEEECCSCTTTCGGGHHHHHTTCSEEEEEEETTCHHHH
T ss_pred HHHHHHHh------CCCCCCcCCccceEEEEEEEEecceEEEEEEEECCCchhhhhHHHHHhccccEEEEEeecchhHHH
Confidence 45555555 77888999999988764 223468999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhCCCCCCCcEEEEEeCCCCCC--CCCHHHHHhHcCccccCCcceEEEEeeecCCCCHHHHHHHHHHHHH
Q 029517 96 EDSKTALEKVLRNEDLQGAPLLILANKQDLPD--AVSADELARYLDLKKLDERVCMFEAVSGYDGFGIKESVEWLVEVME 173 (192)
Q Consensus 96 ~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~e~~~~i~~~i~ 173 (192)
+.+..|+..+..... .++|+++||||+|+.+ .++.+++.++++ ..++.|++|||++|.||+++|++|++.+.
T Consensus 102 ~~i~~~~~~i~~~~~-~~~piilVgNK~Dl~~~r~V~~~e~~~~a~-----~~~~~~~e~SAktg~nV~e~F~~i~~~i~ 175 (216)
T 4dkx_A 102 QQTTKWIDDVRTERG-SDVIIMLVGNKTDLADKRQVSIEEGERKAK-----ELNVMFIETSAKAGYNVKQLFRRVAAALP 175 (216)
T ss_dssp HTHHHHHHHHHHHHT-TSSEEEEEEECTTCGGGCCSCHHHHHHHHH-----HHTCEEEEEBTTTTBSHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHhcC-CCCeEEEEeeccchHhcCcccHHHHhhHHH-----HhCCeeEEEeCCCCcCHHHHHHHHHHHHH
Confidence 999999999887543 5799999999999965 688899988887 56789999999999999999999998876
Q ss_pred hc
Q 029517 174 RS 175 (192)
Q Consensus 174 ~~ 175 (192)
..
T Consensus 176 ~~ 177 (216)
T 4dkx_A 176 GM 177 (216)
T ss_dssp --
T ss_pred hh
Confidence 43
No 2
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.96 E-value=1.6e-28 Score=179.07 Aligned_cols=168 Identities=31% Similarity=0.619 Sum_probs=135.8
Q ss_pred ChhhhHHHHhhhhccccHH------------HHHHHHhhhhccCCCCCCCCCCCCcceEEEEEEecCEEEEEEeCCCCcc
Q 029517 1 MFSLFYGLWKYIFTKTEFH------------TLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPG 68 (192)
Q Consensus 1 ~~~~~~~~~~~~~kst~~~------------~l~~~~~~~~~~~~~~~~~~~~~T~g~~~~~~~~~~~~~~i~D~~G~~~ 68 (192)
|.++++++++ +++..-++ +|++++.. +.+. .+.||+|.....+..+++.+.+|||||+++
T Consensus 1 m~~~~~~~~~-~~~~~~~~i~v~G~~~~GKssl~~~l~~------~~~~-~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~ 72 (187)
T 1zj6_A 1 MGILFTRIWR-LFNHQEHKVIIVGLDNAGKTTILYQFSM------NEVV-HTSPTIGSNVEEIVINNTRFLMWDIGGQES 72 (187)
T ss_dssp -CHHHHHHHH-HHTTSCEEEEEEESTTSSHHHHHHHHHT------TSCE-EEECCSCSSCEEEEETTEEEEEEECCC---
T ss_pred CchHHHHHHH-hcCCCccEEEEECCCCCCHHHHHHHHhc------CCCC-cCcCCCccceEEEEECCEEEEEEECCCCHh
Confidence 8889999998 76655554 88888875 4444 678899988888888889999999999999
Q ss_pred cHHHHHHhhhcCCEEEEEEeCCCcccHHHHHHHHHHHHhCCCCCCCcEEEEEeCCCCCCCCCHHHHHhHcCccccCCcce
Q 029517 69 LRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAVSADELARYLDLKKLDERVC 148 (192)
Q Consensus 69 ~~~~~~~~~~~~d~ii~v~D~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~ 148 (192)
+...+..+++++|++++|+|++++++++.+..|+..+.......+.|+++|+||+|+.+....+++.+.+....+...++
T Consensus 73 ~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~ 152 (187)
T 1zj6_A 73 LRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKECMTVAEISQFLKLTSIKDHQW 152 (187)
T ss_dssp -CGGGHHHHTTCCEEEEEEETTCTTTHHHHHHHHHHHHTSGGGTTCEEEEEEECTTSTTCCCHHHHHHHHTGGGCCSSCE
T ss_pred HHHHHHHHhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhchhhCCCeEEEEEECCCCcCCCCHHHHHHHhChhhhcCCCc
Confidence 98899999999999999999999999999999999988764335799999999999988777778777766433445678
Q ss_pred EEEEeeecCCCCHHHHHHHHHHHHHhcc
Q 029517 149 MFEAVSGYDGFGIKESVEWLVEVMERSK 176 (192)
Q Consensus 149 ~~~~~Sa~~~~gi~e~~~~i~~~i~~~~ 176 (192)
+++++||++|.||+++|++|.+.+....
T Consensus 153 ~~~~~Sa~~g~gi~~l~~~l~~~~~~~~ 180 (187)
T 1zj6_A 153 HIQACCALTGEGLCQGLEWMMSRLKIRL 180 (187)
T ss_dssp EEEECBTTTTBTHHHHHHHHHHHHCC--
T ss_pred EEEEccCCCCcCHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999875543
No 3
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.96 E-value=3.7e-28 Score=176.15 Aligned_cols=168 Identities=36% Similarity=0.663 Sum_probs=137.3
Q ss_pred ChhhhHHHHhhhhc-cccHH------------HHHHHHhhhhccCCCCCCCCCCCCcceEEEEEEecCEEEEEEeCCCCc
Q 029517 1 MFSLFYGLWKYIFT-KTEFH------------TLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQP 67 (192)
Q Consensus 1 ~~~~~~~~~~~~~k-st~~~------------~l~~~~~~~~~~~~~~~~~~~~~T~g~~~~~~~~~~~~~~i~D~~G~~ 67 (192)
|.++++++++.++. ..-++ +|++++.. +.+ ..+.||+|.....+...+..+.+|||||++
T Consensus 1 mg~~~~~~~~~~~~~~~~~~i~v~G~~~~GKssli~~l~~------~~~-~~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~ 73 (183)
T 1moz_A 1 MGNIFSSMFDKLWGSNKELRILILGLDGAGKTTILYRLQI------GEV-VTTKPTIGFNVETLSYKNLKLNVWDLGGQT 73 (183)
T ss_dssp -CHHHHHHHGGGTTCSSCEEEEEEEETTSSHHHHHHHTCC------SEE-EEECSSTTCCEEEEEETTEEEEEEEEC---
T ss_pred CchHHHHHHHHhcCCCCccEEEEECCCCCCHHHHHHHHhc------CCc-CccCCcCccceEEEEECCEEEEEEECCCCH
Confidence 88999999998876 44443 88888775 333 567889998888888888999999999999
Q ss_pred ccHHHHHHhhhcCCEEEEEEeCCCcccHHHHHHHHHHHHhCCCCCCCcEEEEEeCCCCCCCCCHHHHHhHcCccccCCcc
Q 029517 68 GLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAVSADELARYLDLKKLDERV 147 (192)
Q Consensus 68 ~~~~~~~~~~~~~d~ii~v~D~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~ 147 (192)
++...+..+++++|++++|+|++++.+++.+..|+..+.......+.|+++|+||+|+.+....+++.+.+........+
T Consensus 74 ~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~i~~~~~~~~~~~~~ 153 (183)
T 1moz_A 74 SIRPYWRCYYADTAAVIFVVDSTDKDRMSTASKELHLMLQEEELQDAALLVFANKQDQPGALSASEVSKELNLVELKDRS 153 (183)
T ss_dssp -CCTTGGGTTTTEEEEEEEEETTCTTTHHHHHHHHHHHTTSSTTSSCEEEEEEECTTSTTCCCHHHHHHHTTTTTCCSSC
T ss_pred hHHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHcChhhCCCeEEEEEECCCCCCCCCHHHHHHHhCcccccCCc
Confidence 98888889999999999999999999999999999998876444689999999999998877778888877654444567
Q ss_pred eEEEEeeecCCCCHHHHHHHHHHHHHhc
Q 029517 148 CMFEAVSGYDGFGIKESVEWLVEVMERS 175 (192)
Q Consensus 148 ~~~~~~Sa~~~~gi~e~~~~i~~~i~~~ 175 (192)
++++++||++|.||+++|++|.+.+.+.
T Consensus 154 ~~~~~~Sa~~~~gi~~l~~~l~~~~~~~ 181 (183)
T 1moz_A 154 WSIVASSAIKGEGITEGLDWLIDVIKEE 181 (183)
T ss_dssp EEEEEEBGGGTBTHHHHHHHHHHHHHHH
T ss_pred eEEEEccCCCCcCHHHHHHHHHHHHHhc
Confidence 8999999999999999999999987653
No 4
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=99.95 E-value=5.2e-27 Score=167.11 Aligned_cols=151 Identities=30% Similarity=0.597 Sum_probs=125.8
Q ss_pred hccccHHHHHHHHhhhhccCCCCCCCCCCCCcceEEEEEEecCEEEEEEeCCCCcccHHHHHHhhhcCCEEEEEEeCCCc
Q 029517 13 FTKTEFHTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACP 92 (192)
Q Consensus 13 ~kst~~~~l~~~~~~~~~~~~~~~~~~~~~T~g~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ii~v~D~~~~ 92 (192)
=|||++|+|++.. +. .+.||+|.....+....+.+.+|||||++++...+..+++++|++++|+|++++
T Consensus 12 GKssl~~~l~~~~----------~~-~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~ 80 (164)
T 1r8s_A 12 GKTTILYKLKLGE----------IV-TTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDR 80 (164)
T ss_dssp SHHHHHHHHHHHC----------SS-CCCCCSSCCEEEEECSSCEEEEEECCCCGGGHHHHHHHTTTCSEEEEEEETTCG
T ss_pred CHHHHHHHHHcCC----------cC-cccCcCceeEEEEEECCEEEEEEEcCCChhhHHHHHHHhccCCEEEEEEECCCH
Confidence 3788888887542 22 357899987778888889999999999999999999999999999999999999
Q ss_pred ccHHHHHHHHHHHHhCCCCCCCcEEEEEeCCCCCCCCCHHHHHhHcCccccCCcceEEEEeeecCCCCHHHHHHHHHHHH
Q 029517 93 SRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAVSADELARYLDLKKLDERVCMFEAVSGYDGFGIKESVEWLVEVM 172 (192)
Q Consensus 93 ~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~e~~~~i~~~i 172 (192)
++++.+..|+..+.......+.|+++|+||+|+.+....+++.+..........+++++++||++|.||+++|++|.+.+
T Consensus 81 ~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i 160 (164)
T 1r8s_A 81 ERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLSNQL 160 (164)
T ss_dssp GGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGCSSCCEEEEECBTTTTBTHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHhchhhcCCeEEEEEECcCCcCCCCHHHHHHHhCcccccCccEEEEEcccCCCcCHHHHHHHHHHHH
Confidence 99999999999887754445799999999999987766677777666444445678899999999999999999999876
Q ss_pred Hh
Q 029517 173 ER 174 (192)
Q Consensus 173 ~~ 174 (192)
.+
T Consensus 161 ~~ 162 (164)
T 1r8s_A 161 RN 162 (164)
T ss_dssp --
T ss_pred hh
Confidence 54
No 5
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=99.95 E-value=5e-27 Score=170.79 Aligned_cols=149 Identities=36% Similarity=0.652 Sum_probs=127.8
Q ss_pred HHHHHHhhhhccCCCCCCCCCCCCcceEEEEEEecCEEEEEEeCCCCcccHHHHHHhhhcCCEEEEEEeCCCcccHHHHH
Q 029517 20 TLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSK 99 (192)
Q Consensus 20 ~l~~~~~~~~~~~~~~~~~~~~~T~g~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ii~v~D~~~~~s~~~~~ 99 (192)
+|++++.+ +. ...+.||+|.....+..+.+.+.+|||||++++...+..+++++|++++|+|++++.+++.+.
T Consensus 33 sl~~~l~~------~~-~~~~~~t~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~ 105 (186)
T 1ksh_A 33 TILKKFNG------ED-VDTISPTLGFNIKTLEHRGFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADRQRMQDCQ 105 (186)
T ss_dssp HHHHHHTT------CC-CSSCCCCSSEEEEEEEETTEEEEEEEECCSHHHHTTGGGGCTTCSEEEEEEETTCGGGHHHHH
T ss_pred HHHHHHhc------CC-CCcccccCccceEEEEECCEEEEEEECCCCHhHHHHHHHHhcCCCEEEEEEECcCHHHHHHHH
Confidence 77777775 33 567789999888888888999999999999999988999999999999999999999999999
Q ss_pred HHHHHHHhCCCCCCCcEEEEEeCCCCCCCCCHHHHHhHcCccccCCcceEEEEeeecCCCCHHHHHHHHHHHHHhc
Q 029517 100 TALEKVLRNEDLQGAPLLILANKQDLPDAVSADELARYLDLKKLDERVCMFEAVSGYDGFGIKESVEWLVEVMERS 175 (192)
Q Consensus 100 ~~~~~i~~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~e~~~~i~~~i~~~ 175 (192)
.|+..+.......+.|+++|+||+|+.+....+++.+.+.+......+++++++||++|.|++++|++|.+.+.+.
T Consensus 106 ~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~~ 181 (186)
T 1ksh_A 106 RELQSLLVEERLAGATLLIFANKQDLPGALSCNAIQEALELDSIRSHHWRIQGCSAVTGEDLLPGIDWLLDDISSR 181 (186)
T ss_dssp HHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGCCSSCEEEEECCTTTCTTHHHHHHHHHHHHHTC
T ss_pred HHHHHHHhChhcCCCcEEEEEeCccCCCCCCHHHHHHHhChhhccCCceEEEEeeCCCCCCHHHHHHHHHHHHHhc
Confidence 9999887764345799999999999988777777777776444445678999999999999999999999988654
No 6
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=99.95 E-value=1.2e-27 Score=175.52 Aligned_cols=165 Identities=33% Similarity=0.641 Sum_probs=130.4
Q ss_pred hhhhHHHHhhhhccccHH------------HHHHHHhhhhccCCCCCCCCCCCCcceEEEEEEecCEEEEEEeCCCCccc
Q 029517 2 FSLFYGLWKYIFTKTEFH------------TLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPGL 69 (192)
Q Consensus 2 ~~~~~~~~~~~~kst~~~------------~l~~~~~~~~~~~~~~~~~~~~~T~g~~~~~~~~~~~~~~i~D~~G~~~~ 69 (192)
|+++.++++.+++..-++ +|++++.. +.+. .+.||+|.....+....+.+.+|||||++++
T Consensus 14 ~~~~~~~~~~~~~~~~~ki~v~G~~~vGKSsLi~~l~~------~~~~-~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~ 86 (192)
T 2b6h_A 14 LVPRGSLFSRIFGKKQMRILMVGLDAAGKTTILYKLKL------GEIV-TTIPTIGFNVETVEYKNICFTVWDVGGQDKI 86 (192)
T ss_dssp ---CCCGGGGTTTTSCEEEEEEESTTSSHHHHHHHHCS------SCCE-EEEEETTEEEEEEEETTEEEEEEECC-----
T ss_pred cchHHHHHHHhccCCccEEEEECCCCCCHHHHHHHHHh------CCcc-ccCCcCceeEEEEEECCEEEEEEECCCCHhH
Confidence 466777777777655554 77787765 3333 4688999888888888999999999999999
Q ss_pred HHHHHHhhhcCCEEEEEEeCCCcccHHHHHHHHHHHHhCCCCCCCcEEEEEeCCCCCCCCCHHHHHhHcCccccCCcceE
Q 029517 70 RSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAVSADELARYLDLKKLDERVCM 149 (192)
Q Consensus 70 ~~~~~~~~~~~d~ii~v~D~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~ 149 (192)
...+..+++++|++++|+|++++++++.+..|+..+.......+.|+++|+||+|+.+....+++.+..........+++
T Consensus 87 ~~~~~~~~~~~d~iilv~D~~~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~ 166 (192)
T 2b6h_A 87 RPLWRHYFQNTQGLIFVVDSNDRERVQESADELQKMLQEDELRDAVLLVFANKQDMPNAMPVSELTDKLGLQHLRSRTWY 166 (192)
T ss_dssp CTTHHHHHHTCCEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGCSSCCEE
T ss_pred HHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHhcccccCCCeEEEEEECCCCCCCCCHHHHHHHhCcccccCCceE
Confidence 88999999999999999999999999999999999887544457999999999999877677777777664444456789
Q ss_pred EEEeeecCCCCHHHHHHHHHHHHH
Q 029517 150 FEAVSGYDGFGIKESVEWLVEVME 173 (192)
Q Consensus 150 ~~~~Sa~~~~gi~e~~~~i~~~i~ 173 (192)
++++||++|.||+++|++|.+.+.
T Consensus 167 ~~~~SA~~g~gi~~l~~~l~~~i~ 190 (192)
T 2b6h_A 167 VQATCATQGTGLYDGLDWLSHELS 190 (192)
T ss_dssp EEECBTTTTBTHHHHHHHHHHHTT
T ss_pred EEECcCCCcCCHHHHHHHHHHHHh
Confidence 999999999999999999998764
No 7
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=99.95 E-value=1.2e-27 Score=174.59 Aligned_cols=169 Identities=33% Similarity=0.568 Sum_probs=135.4
Q ss_pred ChhhhHHHHh--hhhc-cccHH------------HHHHHHhhhhccCCCCCCCCCCCCcceEEEEEEecCEEEEEEeCCC
Q 029517 1 MFSLFYGLWK--YIFT-KTEFH------------TLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGG 65 (192)
Q Consensus 1 ~~~~~~~~~~--~~~k-st~~~------------~l~~~~~~~~~~~~~~~~~~~~~T~g~~~~~~~~~~~~~~i~D~~G 65 (192)
|+++++++++ .+|+ ..-++ +|++++.. +.+ ..+.||+|.....+....+.+.+|||||
T Consensus 3 m~~~~~~~~~~l~~f~~~~~~~i~v~G~~~~GKssli~~l~~------~~~-~~~~~t~~~~~~~~~~~~~~~~~~Dt~G 75 (189)
T 2x77_A 3 MGAWLASLKQTLGLLPADRKIRVLMLGLDNAGKTSILYRLHL------GDV-VTTVPTVGVNLETLQYKNISFEVWDLGG 75 (189)
T ss_dssp ---CCSCHHHHHHTSCTTSCEEEEEEEETTSSHHHHHHHTCC------SCC-EEECSSTTCCEEEEEETTEEEEEEEECC
T ss_pred hHHHHHHHHHHhhhccCCCceEEEEECCCCCCHHHHHHHHHc------CCC-CCcCCCCceEEEEEEECCEEEEEEECCC
Confidence 7777777777 4554 33333 77777754 333 3468899988888888899999999999
Q ss_pred CcccHHHHHHhhhcCCEEEEEEeCCCcccHHHHHHHHHHHHhCCCCCCCcEEEEEeCCCCCCCCCHHHHHhHcCccccCC
Q 029517 66 QPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAVSADELARYLDLKKLDE 145 (192)
Q Consensus 66 ~~~~~~~~~~~~~~~d~ii~v~D~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~ 145 (192)
++++...+..+++++|++++|+|++++++++.+..|+..+.......+.|+++|+||+|+.+....+++.+.........
T Consensus 76 ~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~ 155 (189)
T 2x77_A 76 QTGVRPYWRCYFSDTDAVIYVVDSTDRDRMGVAKHELYALLDEDELRKSLLLIFANKQDLPDAASEAEIAEQLGVSSIMN 155 (189)
T ss_dssp SSSSCCCCSSSSTTCCEEEEEEETTCCTTHHHHHHHHHHHHTCSTTTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGCCS
T ss_pred CHhHHHHHHHHhhcCCEEEEEEeCCCHHHHHHHHHHHHHHHhhhhcCCCeEEEEEECCCCcCCCCHHHHHHHhChhhccC
Confidence 99988888889999999999999999999999999999888765446899999999999987766677777665444445
Q ss_pred cceEEEEeeecCCCCHHHHHHHHHHHHHhcc
Q 029517 146 RVCMFEAVSGYDGFGIKESVEWLVEVMERSK 176 (192)
Q Consensus 146 ~~~~~~~~Sa~~~~gi~e~~~~i~~~i~~~~ 176 (192)
.+++++++||++|.||+++|++|.+.+.+.+
T Consensus 156 ~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~~~ 186 (189)
T 2x77_A 156 RTWTIVKSSSKTGDGLVEGMDWLVERLREQG 186 (189)
T ss_dssp SCEEEEECCTTTCTTHHHHHHHHHHHHHHTC
T ss_pred CceEEEEccCCCccCHHHHHHHHHHHHHhcc
Confidence 6789999999999999999999999886553
No 8
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=99.95 E-value=2.4e-26 Score=164.61 Aligned_cols=151 Identities=34% Similarity=0.580 Sum_probs=126.3
Q ss_pred ccccHHHHHHHHhhhhccCCCCCCCCCCCCcceEEEEEEecCEEEEEEeCCCCcccHHHHHHhhhcCCEEEEEEeCCCcc
Q 029517 14 TKTEFHTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPS 93 (192)
Q Consensus 14 kst~~~~l~~~~~~~~~~~~~~~~~~~~~T~g~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ii~v~D~~~~~ 93 (192)
|||++|+|.+. .+ ..+.||+|.....+....+.+.+|||||++.+...+..+++++|++++|+|++++.
T Consensus 20 Kssl~~~l~~~----------~~-~~~~~t~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~ 88 (171)
T 1upt_A 20 KTTILYRLQVG----------EV-VTTIPTIGFNVETVTYKNLKFQVWDLGGLTSIRPYWRCYYSNTDAVIYVVDSCDRD 88 (171)
T ss_dssp HHHHHHHHHHS----------SC-CCCCCCSSEEEEEEEETTEEEEEEEECCCGGGGGGGGGGCTTCSEEEEEEETTCCT
T ss_pred HHHHHHHHhcC----------CC-CCcCCcCccceEEEEECCEEEEEEECCCChhhhHHHHHHhccCCEEEEEEECCCHH
Confidence 67777777542 22 34688999888888888999999999999999999999999999999999999999
Q ss_pred cHHHHHHHHHHHHhCCCCCCCcEEEEEeCCCCCCCCCHHHHHhHcCccccCCcceEEEEeeecCCCCHHHHHHHHHHHHH
Q 029517 94 RFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAVSADELARYLDLKKLDERVCMFEAVSGYDGFGIKESVEWLVEVME 173 (192)
Q Consensus 94 s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~e~~~~i~~~i~ 173 (192)
+++.+..|+..+.......+.|+++|+||+|+.+..+.+++.+..........+++++++||++|.|++++|++|.+.+.
T Consensus 89 s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~ 168 (171)
T 1upt_A 89 RIGISKSELVAMLEEEELRKAILVVFANKQDMEQAMTSSEMANSLGLPALKDRKWQIFKTSATKGTGLDEAMEWLVETLK 168 (171)
T ss_dssp THHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHHTGGGCTTSCEEEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhchhhCCCEEEEEEECCCCcCCCCHHHHHHHhCchhccCCceEEEECcCCCCcCHHHHHHHHHHHHh
Confidence 99999999988877643457999999999999877666777766654444456789999999999999999999999886
Q ss_pred hc
Q 029517 174 RS 175 (192)
Q Consensus 174 ~~ 175 (192)
+.
T Consensus 169 ~~ 170 (171)
T 1upt_A 169 SR 170 (171)
T ss_dssp TC
T ss_pred hc
Confidence 53
No 9
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=99.95 E-value=3.5e-26 Score=166.93 Aligned_cols=151 Identities=33% Similarity=0.640 Sum_probs=126.6
Q ss_pred ccccHHHHHHHHhhhhccCCCCCCCCCCCCcceEEEEEEecCEEEEEEeCCCCcccHHHHHHhhhcCCEEEEEEeCCCcc
Q 029517 14 TKTEFHTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPS 93 (192)
Q Consensus 14 kst~~~~l~~~~~~~~~~~~~~~~~~~~~T~g~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ii~v~D~~~~~ 93 (192)
|||++|+|++ +.+...+.||+|.++..+....+.+.+|||||++++...+..+++++|++++|+|+++++
T Consensus 35 KSsli~~l~~----------~~~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~D~~~~~ 104 (188)
T 1zd9_A 35 KTTFVNVIAS----------GQFNEDMIPTVGFNMRKITKGNVTIKLWDIGGQPRFRSMWERYCRGVSAIVYMVDAADQE 104 (188)
T ss_dssp HHHHHHHHHH----------SCCCCSCCCCCSEEEEEEEETTEEEEEEEECCSHHHHTTHHHHHTTCSEEEEEEETTCGG
T ss_pred HHHHHHHHHc----------CCCCCccCCCCceeEEEEEeCCEEEEEEECCCCHhHHHHHHHHHccCCEEEEEEECCCHH
Confidence 6666666653 345567789999999988888999999999999999999999999999999999999999
Q ss_pred cHHHHHHHHHHHHhCCCCCCCcEEEEEeCCCCCCCCCHHHHHhHcCccccCCcceEEEEeeecCCCCHHHHHHHHHHHHH
Q 029517 94 RFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAVSADELARYLDLKKLDERVCMFEAVSGYDGFGIKESVEWLVEVME 173 (192)
Q Consensus 94 s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~e~~~~i~~~i~ 173 (192)
+++.+..|+..+.......+.|+++|+||+|+....+.+++.+..........+++++++||++|.||+++|++|.+.+.
T Consensus 105 s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gv~~l~~~l~~~~~ 184 (188)
T 1zd9_A 105 KIEASKNELHNLLDKPQLQGIPVLVLGNKRDLPGALDEKELIEKMNLSAIQDREICCYSISCKEKDNIDITLQWLIQHSK 184 (188)
T ss_dssp GHHHHHHHHHHHHTCGGGTTCCEEEEEECTTSTTCCCHHHHHHHTTGGGCCSSCEEEEECCTTTCTTHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHHHhCcccCCCCEEEEEECCCCccCCCHHHHHHHhChhhhccCCeeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 99999999998877533357999999999999877667777776664434456789999999999999999999988664
Q ss_pred h
Q 029517 174 R 174 (192)
Q Consensus 174 ~ 174 (192)
+
T Consensus 185 ~ 185 (188)
T 1zd9_A 185 S 185 (188)
T ss_dssp -
T ss_pred h
Confidence 4
No 10
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=99.95 E-value=2.8e-26 Score=166.64 Aligned_cols=148 Identities=36% Similarity=0.672 Sum_probs=122.6
Q ss_pred HHHHHHhhhhccCCCCCCCCCCCCcceEEEEEEecCEEEEEEeCCCCcccHHHHHHhhhcCCEEEEEEeCCCcccHHHHH
Q 029517 20 TLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSK 99 (192)
Q Consensus 20 ~l~~~~~~~~~~~~~~~~~~~~~T~g~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ii~v~D~~~~~s~~~~~ 99 (192)
+|++++.+ + +...+.||+|.....+...++.+.+|||||++.++..+..+++++|++++|+|++++++++.+.
T Consensus 31 sL~~~l~~------~-~~~~~~~t~g~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~ 103 (181)
T 1fzq_A 31 TLLKQLAS------E-DISHITPTQGFNIKSVQSQGFKLNVWDIGGQRKIRPYWRSYFENTDILIYVIDSADRKRFEETG 103 (181)
T ss_dssp HHHHHHCC------S-CCEEEEEETTEEEEEEEETTEEEEEEECSSCGGGHHHHHHHHTTCSEEEEEEETTCGGGHHHHH
T ss_pred HHHHHHhc------C-CCCcccCcCCeEEEEEEECCEEEEEEECCCCHHHHHHHHHHhCCCCEEEEEEECcCHHHHHHHH
Confidence 55555554 2 3356789999888788888999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhCCCCCCCcEEEEEeCCCCCCCCCHHHHHhHcCccccCCcceEEEEeeecCCCCHHHHHHHHHHHHHh
Q 029517 100 TALEKVLRNEDLQGAPLLILANKQDLPDAVSADELARYLDLKKLDERVCMFEAVSGYDGFGIKESVEWLVEVMER 174 (192)
Q Consensus 100 ~~~~~i~~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~e~~~~i~~~i~~ 174 (192)
.|+..+.......+.|+++|+||+|+.+....+++.+.+.+......+++++++||++|.||+++|++|.+.+.+
T Consensus 104 ~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~~~~ 178 (181)
T 1fzq_A 104 QELTELLEEEKLSCVPVLIFANKQDLLTAAPASEIAEGLNLHTIRDRVWQIQSCSALTGEGVQDGMNWVCKNVNA 178 (181)
T ss_dssp HHHHHHTTCGGGTTCCEEEEEECTTSTTCCCHHHHHHHTTGGGCCSSCEEEEECCTTTCTTHHHHHHHHHHTC--
T ss_pred HHHHHHHhChhhcCCCEEEEEECcCcccCCCHHHHHHHhCchhccCCceEEEEccCCCCCCHHHHHHHHHHHHHh
Confidence 999888765333679999999999998876777777776544444567899999999999999999999887654
No 11
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=99.94 E-value=8.2e-27 Score=170.37 Aligned_cols=153 Identities=30% Similarity=0.575 Sum_probs=126.1
Q ss_pred ccccHHHHHHHHhhhhccCCCCCCCCCCCCcceEEEEEEecCEEEEEEeCCCCcccHHHHHHhhhcCCEEEEEEeCCCcc
Q 029517 14 TKTEFHTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPS 93 (192)
Q Consensus 14 kst~~~~l~~~~~~~~~~~~~~~~~~~~~T~g~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ii~v~D~~~~~ 93 (192)
|||++|+|++... +...+.||+|.....+..+++.+.+|||||++++...+..+++++|++++|+|++++.
T Consensus 34 KSsli~~l~~~~~---------~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~ 104 (190)
T 2h57_A 34 KTTIINKLKPSNA---------QSQNILPTIGFSIEKFKSSSLSFTVFDMSGQGRYRNLWEHYYKEGQAIIFVIDSSDRL 104 (190)
T ss_dssp HHHHHHHTSCGGG---------CCSSCCCCSSEEEEEEECSSCEEEEEEECCSTTTGGGGGGGGGGCSEEEEEEETTCHH
T ss_pred HHHHHHHHhcCCC---------CCCCcCCccceeEEEEEECCEEEEEEECCCCHHHHHHHHHHHhcCCEEEEEEECCCHH
Confidence 5666666543321 3455789999888888888899999999999999999999999999999999999999
Q ss_pred cHHHHHHHHHHHHhCCCC--CCCcEEEEEeCCCCCCCCCHHHHHhHcCccccCCcceEEEEeeecCCCCHHHHHHHHHHH
Q 029517 94 RFEDSKTALEKVLRNEDL--QGAPLLILANKQDLPDAVSADELARYLDLKKLDERVCMFEAVSGYDGFGIKESVEWLVEV 171 (192)
Q Consensus 94 s~~~~~~~~~~i~~~~~~--~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~e~~~~i~~~ 171 (192)
+++.+..|+..+...... .++|+++|+||+|+.+....+++.+.+.+..+...+++++++||++|.||+++|++|.+.
T Consensus 105 s~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~ 184 (190)
T 2h57_A 105 RMVVAKEELDTLLNHPDIKHRRIPILFFANKMDLRDAVTSVKVSQLLCLENIKDKPWHICASDAIKGEGLQEGVDWLQDQ 184 (190)
T ss_dssp HHHHHHHHHHHHHHSTTTTTSCCCEEEEEECTTSTTCCCHHHHHHHHTGGGCCSSCEEEEECBTTTTBTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhChhhccCCCeEEEEEeCcCcccCCCHHHHHHHhChhhccCCceEEEEccCCCCcCHHHHHHHHHHH
Confidence 999999999998876543 579999999999998877788888877644444557899999999999999999999987
Q ss_pred HHhc
Q 029517 172 MERS 175 (192)
Q Consensus 172 i~~~ 175 (192)
+.+.
T Consensus 185 i~~~ 188 (190)
T 2h57_A 185 IQTV 188 (190)
T ss_dssp C---
T ss_pred HHHh
Confidence 7543
No 12
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=99.94 E-value=1.4e-26 Score=169.97 Aligned_cols=155 Identities=32% Similarity=0.568 Sum_probs=126.0
Q ss_pred ccccHHHHHHHHhhhhccCCCCCCC-CCCCCcceEEEEEEecCEEEEEEeCCCCcccHHHHHHhhhcCCEEEEEEeCCCc
Q 029517 14 TKTEFHTLLEKLKSVYSNVEGLPPD-RIVPTVGLNIGRIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACP 92 (192)
Q Consensus 14 kst~~~~l~~~~~~~~~~~~~~~~~-~~~~T~g~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ii~v~D~~~~ 92 (192)
|||++|+| .. +.+.. .|.||+|.....+....+.+.+|||||++++...+..+++++|++|+|+|++++
T Consensus 30 KSsl~~~l----~~------~~~~~~~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~v~D~~~~ 99 (199)
T 4bas_A 30 KTTIINQV----KP------AQSSSKHITATVGYNVETFEKGRVAFTVFDMGGAKKFRGLWETYYDNIDAVIFVVDSSDH 99 (199)
T ss_dssp HHHHHHHH----SC------CC----CCCCCSSEEEEEEEETTEEEEEEEECCSGGGGGGGGGGCTTCSEEEEEEETTCG
T ss_pred HHHHHHHH----hc------CCCcccccccccceeEEEEEeCCEEEEEEECCCCHhHHHHHHHHHhcCCEEEEEEECCcH
Confidence 55555555 43 44455 679999998888988899999999999999999999999999999999999999
Q ss_pred ccHHHHHHHHHHHHhCCCC-------CCCcEEEEEeCCCCCCCCCHHHHHhHcCcccc-CCcceEEEEeeecCCCCHHHH
Q 029517 93 SRFEDSKTALEKVLRNEDL-------QGAPLLILANKQDLPDAVSADELARYLDLKKL-DERVCMFEAVSGYDGFGIKES 164 (192)
Q Consensus 93 ~s~~~~~~~~~~i~~~~~~-------~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~-~~~~~~~~~~Sa~~~~gi~e~ 164 (192)
++++.+..|+..+...... .++|+++|+||+|+......+++.+.+.+... ...+++++++||++|.||+++
T Consensus 100 ~s~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l 179 (199)
T 4bas_A 100 LRLCVVKSEIQAMLKHEDIRRELPGGGRVPFLFFANKMDAAGAKTAAELVEILDLTTLMGDHPFVIFASNGLKGTGVHEG 179 (199)
T ss_dssp GGHHHHHHHHHHHHTSHHHHSBCTTSCBCCEEEEEECTTSTTCCCHHHHHHHHTHHHHHTTSCEEEEECBTTTTBTHHHH
T ss_pred HHHHHHHHHHHHHHhChhhhhcccccCCCCEEEEEECcCCCCCCCHHHHHHHhcchhhccCCeeEEEEeeCCCccCHHHH
Confidence 9999999999988765211 27899999999999887777777776653332 356789999999999999999
Q ss_pred HHHHHHHHHhcchh
Q 029517 165 VEWLVEVMERSKRT 178 (192)
Q Consensus 165 ~~~i~~~i~~~~~~ 178 (192)
|++|.+.+.+..++
T Consensus 180 ~~~l~~~~~~~~~~ 193 (199)
T 4bas_A 180 FSWLQETASRQSGK 193 (199)
T ss_dssp HHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHhcc
Confidence 99999988766543
No 13
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=99.94 E-value=2.7e-26 Score=167.97 Aligned_cols=145 Identities=32% Similarity=0.532 Sum_probs=121.5
Q ss_pred HHHHHHhhhhccCCCCCCCCCCCCcceEEEEEEecCEEEEEEeCCCCcccHHHHHHhhhcCCEEEEEEeCCCcccHHHHH
Q 029517 20 TLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSK 99 (192)
Q Consensus 20 ~l~~~~~~~~~~~~~~~~~~~~~T~g~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ii~v~D~~~~~s~~~~~ 99 (192)
+|++++.. +.+ ..+.||++.....+..+++.+.+|||||++.++..+..+++++|++++|+|++++++++.+.
T Consensus 38 sli~~l~~------~~~-~~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~ 110 (190)
T 1m2o_B 38 TLLHMLKN------DRL-ATLQPTWHPTSEELAIGNIKFTTFDLGGHIQARRLWKDYFPEVNGIVFLVDAADPERFDEAR 110 (190)
T ss_dssp HHHHHHHH------SCC-CCCCCCCSCEEEEEEETTEEEEEEECCCSGGGTTSGGGGCTTCCEEEEEEETTCGGGHHHHH
T ss_pred HHHHHHhc------CCC-CccccCCCCCeEEEEECCEEEEEEECCCCHHHHHHHHHHHhcCCEEEEEEECCChHHHHHHH
Confidence 66666654 333 35688999988888888899999999999999888888999999999999999999999999
Q ss_pred HHHHHHHhCCCCCCCcEEEEEeCCCCCCCCCHHHHHhHcCccc-------cCCcceEEEEeeecCCCCHHHHHHHHHHH
Q 029517 100 TALEKVLRNEDLQGAPLLILANKQDLPDAVSADELARYLDLKK-------LDERVCMFEAVSGYDGFGIKESVEWLVEV 171 (192)
Q Consensus 100 ~~~~~i~~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~Sa~~~~gi~e~~~~i~~~ 171 (192)
.|+..+.+.....+.|+++|+||+|+.+..+.+++.+.+.... ....+++++++||++|.||+++|++|.+.
T Consensus 111 ~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~ 189 (190)
T 1m2o_B 111 VELDALFNIAELKDVPFVILGNKIDAPNAVSEAELRSALGLLNTTGSQRIEGQRPVEVFMCSVVMRNGYLEAFQWLSQY 189 (190)
T ss_dssp HHHHHHHTCGGGTTCCEEEEEECTTSTTCCCHHHHHHHTTCSSCCC---CCSSCCEEEEECBTTTTBSHHHHHHHHHTT
T ss_pred HHHHHHHcchhhcCCCEEEEEECCCCcCCCCHHHHHHHhCCccccccccccccceEEEEEeECCcCCCHHHHHHHHHhh
Confidence 9999988754346799999999999988788888888876321 12356889999999999999999999753
No 14
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=99.94 E-value=1.3e-26 Score=169.57 Aligned_cols=157 Identities=16% Similarity=0.180 Sum_probs=121.7
Q ss_pred ccccHHHHHHHHhhhhccCCCCCCCCCCCCcceEEEE-----EEecCEEEEEEeCCCCcccHHHHHHhhhcCCEEEEEEe
Q 029517 14 TKTEFHTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGR-----IEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVID 88 (192)
Q Consensus 14 kst~~~~l~~~~~~~~~~~~~~~~~~~~~T~g~~~~~-----~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ii~v~D 88 (192)
|||++|.+.++...............+.||+|.++.. ++...+.+++|||||++++...+..+++++|++|+|+|
T Consensus 27 KssL~~~l~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~D 106 (198)
T 3t1o_A 27 KTTNLKWIYSKVPEGRKGEMVSLATEDERTLFFDFLPLDIGEVKGFKTRFHLYTVPGQVFYNASRKLILRGVDGIVFVAD 106 (198)
T ss_dssp HHHHHHHHHHTSCGGGBCCCEEEECSSCEEEEEEECCSSCCCSSSCEEEEEEEECCSCCSCSHHHHHHTTTCCEEEEEEE
T ss_pred HHHHHHHHHhhccccccccccccccccccceeeeecccccccccCCceEEEEEeCCChHHHHHHHHHHHhcCCEEEEEEE
Confidence 7777766655433311110001123367788887664 23346789999999999999999999999999999999
Q ss_pred CC------CcccHHHHHHHHHHHHhCCCCCCCcEEEEEeCCCCCCCCCHHHHHhHcCccccCCcce-EEEEeeecCCCCH
Q 029517 89 AA------CPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAVSADELARYLDLKKLDERVC-MFEAVSGYDGFGI 161 (192)
Q Consensus 89 ~~------~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~gi 161 (192)
++ +.++++.+..|+..+... ..+.|+++|+||+|+.+....+++.+++. ..++ +++++||++|.||
T Consensus 107 ~~~~~~~~~~~s~~~l~~~l~~~~~~--~~~~piilv~NK~Dl~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~gv 179 (198)
T 3t1o_A 107 SAPNRLRANAESMRNMRENLAEYGLT--LDDVPIVIQVNKRDLPDALPVEMVRAVVD-----PEGKFPVLEAVATEGKGV 179 (198)
T ss_dssp CCGGGHHHHHHHHHHHHHHHHHTTCC--TTSSCEEEEEECTTSTTCCCHHHHHHHHC-----TTCCSCEEECBGGGTBTH
T ss_pred CCcchhhHhHHHHHHHHHHHHhhccc--cCCCCEEEEEEchhcccccCHHHHHHHHH-----hcCCceEEEEecCCCcCH
Confidence 99 556777888888877432 26799999999999998888999999987 5566 9999999999999
Q ss_pred HHHHHHHHHHHHhcch
Q 029517 162 KESVEWLVEVMERSKR 177 (192)
Q Consensus 162 ~e~~~~i~~~i~~~~~ 177 (192)
+++|++|.+.+.+..+
T Consensus 180 ~~l~~~l~~~i~~~~~ 195 (198)
T 3t1o_A 180 FETLKEVSRLVLARVA 195 (198)
T ss_dssp HHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHhh
Confidence 9999999998876543
No 15
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=99.94 E-value=5.5e-26 Score=167.43 Aligned_cols=145 Identities=29% Similarity=0.501 Sum_probs=114.1
Q ss_pred HHHHHHhhhhccCCCCCCCCCCCCcceEEEEEEecCEEEEEEeCCCCcccHHHHHHhhhcCCEEEEEEeCCCcccHHHHH
Q 029517 20 TLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSK 99 (192)
Q Consensus 20 ~l~~~~~~~~~~~~~~~~~~~~~T~g~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ii~v~D~~~~~s~~~~~ 99 (192)
+|++++.+ +.+ ..+.||++.....+..+++++.+|||||++.++..+..+++++|++++|+|++++++++.+.
T Consensus 40 sLi~~l~~------~~~-~~~~~t~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~D~~~~~s~~~~~ 112 (198)
T 1f6b_A 40 TLLHMLKD------DRL-GQHVPTLHPTSEELTIAGMTFTTFDLGGHIQARRVWKNYLPAINGIVFLVDCADHERLLESK 112 (198)
T ss_dssp HHHHHHSC------C-------CCCCCSCEEEEETTEEEEEEEECC----CCGGGGGGGGCSEEEEEEETTCGGGHHHHH
T ss_pred HHHHHHhc------CCC-CccCCCCCceeEEEEECCEEEEEEECCCcHhhHHHHHHHHhcCCEEEEEEECCCHHHHHHHH
Confidence 66666654 332 35678888888888888899999999999999888889999999999999999999999999
Q ss_pred HHHHHHHhCCCCCCCcEEEEEeCCCCCCCCCHHHHHhHcCccc---------c---CCcceEEEEeeecCCCCHHHHHHH
Q 029517 100 TALEKVLRNEDLQGAPLLILANKQDLPDAVSADELARYLDLKK---------L---DERVCMFEAVSGYDGFGIKESVEW 167 (192)
Q Consensus 100 ~~~~~i~~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~---------~---~~~~~~~~~~Sa~~~~gi~e~~~~ 167 (192)
.|+..+.+.....++|+++|+||+|+.+.++.+++.+.+.... + ...+.++++|||++|.||+++|++
T Consensus 113 ~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gv~~l~~~ 192 (198)
T 1f6b_A 113 EELDSLMTDETIANVPILILGNKIDRPEAISEERLREMFGLYGQTTGKGSVSLKELNARPLEVFMCSVLKRQGYGEGFRW 192 (198)
T ss_dssp HHHHHHHTCGGGTTSCEEEEEECTTSTTCCCHHHHHHHHTCTTTCCCSSCCCTTTCCSCCEEEEECBTTTTBSHHHHHHH
T ss_pred HHHHHHHhCcccCCCcEEEEEECCCccccCCHHHHHHHhCcccccccccccccccccCceEEEEEEECCCCCCHHHHHHH
Confidence 9999988754346799999999999988778888888776321 1 124678999999999999999999
Q ss_pred HHHH
Q 029517 168 LVEV 171 (192)
Q Consensus 168 i~~~ 171 (192)
|.+.
T Consensus 193 l~~~ 196 (198)
T 1f6b_A 193 MAQY 196 (198)
T ss_dssp HHTT
T ss_pred HHHh
Confidence 9764
No 16
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=99.93 E-value=1.1e-25 Score=163.16 Aligned_cols=147 Identities=31% Similarity=0.591 Sum_probs=124.1
Q ss_pred ccccHHHHHHHHhhhhccCCCCCCCCCCCCcceEEEEEEecCEEEEEEeCCCCcccHHHHHHhhhcCCEEEEEEeCCCcc
Q 029517 14 TKTEFHTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPS 93 (192)
Q Consensus 14 kst~~~~l~~~~~~~~~~~~~~~~~~~~~T~g~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ii~v~D~~~~~ 93 (192)
|||++|+|++. .+ ..+.||+|.....+..+++.+.+|||||++++...+..+++++|++++|+|+++..
T Consensus 34 KSsli~~l~~~----------~~-~~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~v~D~~~~~ 102 (181)
T 2h17_A 34 KTTILYQFSMN----------EV-VHTSPTIGSNVEEIVINNTRFLMWDIGGQESLRSSWNTYYTNTEFVIVVVDSTDRE 102 (181)
T ss_dssp HHHHHHHHHTT----------SC-EEEECCSSSSCEEEEETTEEEEEEEESSSGGGTCGGGGGGTTCCEEEEEEETTCTT
T ss_pred HHHHHHHHhcC----------CC-CccCCcCceeeEEEEECCEEEEEEECCCCHhHHHHHHHHhccCCEEEEEEECCCHH
Confidence 67777666543 22 56688888888888888899999999999999989999999999999999999999
Q ss_pred cHHHHHHHHHHHHhCCCCCCCcEEEEEeCCCCCCCCCHHHHHhHcCccccCCcceEEEEeeecCCCCHHHHHHHHHHH
Q 029517 94 RFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAVSADELARYLDLKKLDERVCMFEAVSGYDGFGIKESVEWLVEV 171 (192)
Q Consensus 94 s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~e~~~~i~~~ 171 (192)
+++.+..|+..+.......++|+++|+||+|+.+....+++.+.+.+......+++++++||++|.||+++|++|.+.
T Consensus 103 s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~ 180 (181)
T 2h17_A 103 RISVTREELYKMLAHEDLRKAGLLIFANKQDVKECMTVAEISQFLKLTSIKDHQWHIQACCALTGEGLCQGLEWMMSR 180 (181)
T ss_dssp THHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGCCSSCEEEEECBTTTTBTHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHhChhhCCCeEEEEEECCCcccCCCHHHHHHHhCcccccCCceEEEEccCCCCcCHHHHHHHHHhh
Confidence 999999999988875333679999999999998877778888877654444567899999999999999999999764
No 17
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=99.93 E-value=3.8e-26 Score=165.61 Aligned_cols=151 Identities=20% Similarity=0.310 Sum_probs=100.0
Q ss_pred ccccHHHHHHHHhhhhccCCCCCCCCCCCCcceEEEE--EEec--CEEEEEEeCCCCcccHHHHHHhhhcCCEEEEEEeC
Q 029517 14 TKTEFHTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGR--IEVS--NSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDA 89 (192)
Q Consensus 14 kst~~~~l~~~~~~~~~~~~~~~~~~~~~T~g~~~~~--~~~~--~~~~~i~D~~G~~~~~~~~~~~~~~~d~ii~v~D~ 89 (192)
|||++|+|++. .+...+.||+|.++.. +... .+.+.+|||||++.+...+..+++++|++++|+|+
T Consensus 21 Kssl~~~l~~~----------~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~ 90 (183)
T 2fu5_C 21 KTCVLFRFSED----------AFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIMLVYDI 90 (183)
T ss_dssp -------------------------CHHHHHCEEEEEEEEEETTEEEEEEEEEC---------CCTTTTTCSEEEEEEET
T ss_pred HHHHHHHHHhC----------CCCCCCCCcccceeEEEEEEECCEEEEEEEEcCCCChhhhhhHHHHHhcCCEEEEEEEC
Confidence 78888877643 3345678888877653 4433 48999999999999998888999999999999999
Q ss_pred CCcccHHHHHHHHHHHHhCCCCCCCcEEEEEeCCCCCC--CCCHHHHHhHcCccccCCcceEEEEeeecCCCCHHHHHHH
Q 029517 90 ACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPD--AVSADELARYLDLKKLDERVCMFEAVSGYDGFGIKESVEW 167 (192)
Q Consensus 90 ~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~e~~~~ 167 (192)
+++.+++.+..|+..+..... .+.|+++|+||+|+.+ .+..+++.+++. ..+++++++||++|.||+++|++
T Consensus 91 ~~~~s~~~~~~~~~~i~~~~~-~~~piilv~nK~Dl~~~~~v~~~~~~~~~~-----~~~~~~~~~Sa~~~~~i~~l~~~ 164 (183)
T 2fu5_C 91 TNEKSFDNIRNWIRNIEEHAS-ADVEKMILGNKCDVNDKRQVSKERGEKLAL-----DYGIKFMETSAKANINVENAFFT 164 (183)
T ss_dssp TCHHHHHHHHHHHHHHHHHSC-TTCEEEEEEEC--CCSCCCSCHHHHHHHHH-----HHTCEEEECCC---CCHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHHHhcC-CCCCEEEEEECccCCccCcCCHHHHHHHHH-----HcCCeEEEEeCCCCCCHHHHHHH
Confidence 999999999999998877532 4789999999999975 456677777765 45679999999999999999999
Q ss_pred HHHHHHhcchhhh
Q 029517 168 LVEVMERSKRTEM 180 (192)
Q Consensus 168 i~~~i~~~~~~~~ 180 (192)
|.+.+.+..+++.
T Consensus 165 l~~~i~~~~~~~~ 177 (183)
T 2fu5_C 165 LARDIKAKMDKNW 177 (183)
T ss_dssp HHHHHHHHHHHHC
T ss_pred HHHHHHHHhhccc
Confidence 9998877654433
No 18
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.93 E-value=9.4e-26 Score=166.72 Aligned_cols=149 Identities=21% Similarity=0.337 Sum_probs=120.2
Q ss_pred ccccHHHHHHHHhhhhccCCCCCCCCCCCCcceEEEE--EEe--cCEEEEEEeCCCCcccHHHHHHhhhcCCEEEEEEeC
Q 029517 14 TKTEFHTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGR--IEV--SNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDA 89 (192)
Q Consensus 14 kst~~~~l~~~~~~~~~~~~~~~~~~~~~T~g~~~~~--~~~--~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ii~v~D~ 89 (192)
|||++|+|++ +.+...+.||+|.++.. +.. ..+.+++|||||++++...+..+++.+|++|+|+|+
T Consensus 39 KSsLi~~l~~----------~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~D~ 108 (201)
T 2ew1_A 39 KTCLVRRFTQ----------GLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQERFRSITQSYYRSANALILTYDI 108 (201)
T ss_dssp HHHHHHHHHH----------SSCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHGGGSTTCSEEEEEEET
T ss_pred HHHHHHHHHh----------CCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHHhcCCEEEEEEEC
Confidence 6666666654 34556778999887653 333 347899999999999999999999999999999999
Q ss_pred CCcccHHHHHHHHHHHHhCCCCCCCcEEEEEeCCCCCC--CCCHHHHHhHcCccccCCcceEEEEeeecCCCCHHHHHHH
Q 029517 90 ACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPD--AVSADELARYLDLKKLDERVCMFEAVSGYDGFGIKESVEW 167 (192)
Q Consensus 90 ~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~e~~~~ 167 (192)
+++.+++.+..|+..+..... .+.|+++|+||+|+.+ .+..+++.+++. ..+++++++||++|.||+++|++
T Consensus 109 ~~~~s~~~~~~~~~~i~~~~~-~~~piilv~NK~Dl~~~~~v~~~~~~~~~~-----~~~~~~~~~Sa~~g~gv~~l~~~ 182 (201)
T 2ew1_A 109 TCEESFRCLPEWLREIEQYAS-NKVITVLVGNKIDLAERREVSQQRAEEFSE-----AQDMYYLETSAKESDNVEKLFLD 182 (201)
T ss_dssp TCHHHHHTHHHHHHHHHHHSC-TTCEEEEEEECGGGGGGCSSCHHHHHHHHH-----HHTCCEEECCTTTCTTHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHhcC-CCCCEEEEEECCCCccccccCHHHHHHHHH-----HcCCEEEEEeCCCCCCHHHHHHH
Confidence 999999999999988876532 5789999999999964 556667766665 44678999999999999999999
Q ss_pred HHHHHHhcchh
Q 029517 168 LVEVMERSKRT 178 (192)
Q Consensus 168 i~~~i~~~~~~ 178 (192)
|.+.+.+..++
T Consensus 183 l~~~i~~~~~~ 193 (201)
T 2ew1_A 183 LACRLISEARQ 193 (201)
T ss_dssp HHHHHHHHHC-
T ss_pred HHHHHHHHHhh
Confidence 99988765433
No 19
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=99.93 E-value=2.7e-25 Score=161.12 Aligned_cols=146 Identities=19% Similarity=0.243 Sum_probs=120.0
Q ss_pred ccccHHHHHHHHhhhhccCCCCCCCCCCCCcceEEEE---EEecCEEEEEEeCCCCcccHHHHHHhhhcCCEEEEEEeCC
Q 029517 14 TKTEFHTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGR---IEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAA 90 (192)
Q Consensus 14 kst~~~~l~~~~~~~~~~~~~~~~~~~~~T~g~~~~~---~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ii~v~D~~ 90 (192)
|||++|+|+ . +.+...+.||++..+.. ++...+.+.+|||||++.+...+..+++++|++++|+|++
T Consensus 31 KSsl~~~l~----~------~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~ 100 (183)
T 3kkq_A 31 KSALTIQFF----Q------KIFVDDYDPTIEDSYLKHTEIDNQWAILDVLDTAGQEEFSAMREQYMRTGDGFLIVYSVT 100 (183)
T ss_dssp HHHHHHHHH----H------SCCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCSCGGGCSSHHHHHHHCSEEEEEEETT
T ss_pred HHHHHHHHH----h------CCCCCCCCCCccceeEEEEEeCCcEEEEEEEECCCchhhHHHHHHHHhcCCEEEEEEECC
Confidence 667766665 3 44566778888877643 2233567889999999999999999999999999999999
Q ss_pred CcccHHHHHHHHHHHHhCCCCCCCcEEEEEeCCCCCC--CCCHHHHHhHcCccccCCcceEEEEeeec-CCCCHHHHHHH
Q 029517 91 CPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPD--AVSADELARYLDLKKLDERVCMFEAVSGY-DGFGIKESVEW 167 (192)
Q Consensus 91 ~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~-~~~gi~e~~~~ 167 (192)
++.+++.+..|+..+.......++|+++|+||+|+.+ .+..+++.+++. ..+++++++||+ +|.||+++|++
T Consensus 101 ~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~v~~~~~~~~~~-----~~~~~~~~~Sa~~~~~~v~~l~~~ 175 (183)
T 3kkq_A 101 DKASFEHVDRFHQLILRVKDRESFPMILVANKVDLMHLRKVTRDQGKEMAT-----KYNIPYIETSAKDPPLNVDKTFHD 175 (183)
T ss_dssp CHHHHHTHHHHHHHHHHHHTSSCCCEEEEEECTTCSTTCCSCHHHHHHHHH-----HHTCCEEEEBCSSSCBSHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECCCchhccCcCHHHHHHHHH-----HhCCeEEEeccCCCCCCHHHHHHH
Confidence 9999999999999887644346899999999999975 667777777776 456889999999 99999999999
Q ss_pred HHHHHHh
Q 029517 168 LVEVMER 174 (192)
Q Consensus 168 i~~~i~~ 174 (192)
|.+.+.+
T Consensus 176 l~~~i~~ 182 (183)
T 3kkq_A 176 LVRVIRQ 182 (183)
T ss_dssp HHHHHHH
T ss_pred HHHHHhh
Confidence 9998764
No 20
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=99.93 E-value=1.5e-25 Score=161.73 Aligned_cols=149 Identities=18% Similarity=0.286 Sum_probs=121.0
Q ss_pred ccccHHHHHHHHhhhhccCCCCCCCCCCCCcceEEEE-EEec--CEEEEEEeCCCCcccHHHHHHhhhcCCEEEEEEeCC
Q 029517 14 TKTEFHTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGR-IEVS--NSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAA 90 (192)
Q Consensus 14 kst~~~~l~~~~~~~~~~~~~~~~~~~~~T~g~~~~~-~~~~--~~~~~i~D~~G~~~~~~~~~~~~~~~d~ii~v~D~~ 90 (192)
|||++|+|++. .+...+.||++..+.. +... .+.+.+|||||++++...+..+++.+|++++|+|++
T Consensus 22 Kssli~~l~~~----------~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~ 91 (181)
T 2fn4_A 22 KSALTIQFIQS----------YFVSDYDPTIEDSYTKICSVDGIPARLDILDTAGQEEFGAMREQYMRAGHGFLLVFAIN 91 (181)
T ss_dssp HHHHHHHHHHS----------SCCSSCCTTCCEEEEEEEEETTEEEEEEEEECCCTTTTSCCHHHHHHHCSEEEEEEETT
T ss_pred HHHHHHHHHhC----------cCccccCCCcCceEEEEEEECCEEEEEEEEECCCchhhHHHHHHHHhhCCEEEEEEeCC
Confidence 67777777653 3456678888887653 3333 478999999999999888999999999999999999
Q ss_pred CcccHHHHHHHHHHHHhCCCCCCCcEEEEEeCCCCCC--CCCHHHHHhHcCccccCCcceEEEEeeecCCCCHHHHHHHH
Q 029517 91 CPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPD--AVSADELARYLDLKKLDERVCMFEAVSGYDGFGIKESVEWL 168 (192)
Q Consensus 91 ~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~e~~~~i 168 (192)
+..+++.+..|+..+.......+.|+++|+||+|+.+ .+..+++.++.. ..+++++++||++|.|++++|++|
T Consensus 92 ~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~-----~~~~~~~~~Sa~~~~gv~~l~~~l 166 (181)
T 2fn4_A 92 DRQSFNEVGKLFTQILRVKDRDDFPVVLVGNKADLESQRQVPRSEASAFGA-----SHHVAYFEASAKLRLNVDEAFEQL 166 (181)
T ss_dssp CHHHHHHHHHHHHHHHHHHTSSCCCEEEEEECGGGGGGCCSCHHHHHHHHH-----HTTCEEEECBTTTTBSHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccCHHHHHHHHH-----HcCCeEEEecCCCCCCHHHHHHHH
Confidence 9999999999999886543335799999999999965 455666766665 456899999999999999999999
Q ss_pred HHHHHhcch
Q 029517 169 VEVMERSKR 177 (192)
Q Consensus 169 ~~~i~~~~~ 177 (192)
.+.+.+..+
T Consensus 167 ~~~~~~~~~ 175 (181)
T 2fn4_A 167 VRAVRKYQE 175 (181)
T ss_dssp HHHHHHHTT
T ss_pred HHHHHHhhc
Confidence 998876543
No 21
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.93 E-value=2.7e-25 Score=160.42 Aligned_cols=148 Identities=20% Similarity=0.378 Sum_probs=110.8
Q ss_pred ccccHHHHHHHHhhhhccCCCCCCCCCCCCcceEEEE--EE--ecCEEEEEEeCCCCcccHHHHHHhhhcCCEEEEEEeC
Q 029517 14 TKTEFHTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGR--IE--VSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDA 89 (192)
Q Consensus 14 kst~~~~l~~~~~~~~~~~~~~~~~~~~~T~g~~~~~--~~--~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ii~v~D~ 89 (192)
|||++|+|++. ......+.||++.++.. +. +..+.+.+|||||++++...+..+++++|++++|+|+
T Consensus 23 Kssli~~l~~~---------~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~ 93 (180)
T 2g6b_A 23 KTCLLVRFKDG---------AFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDTAGQERFRSVTHAYYRDAHALLLLYDV 93 (180)
T ss_dssp HHHHHHHHHHS---------CCCCCCCCCCCSCEEEEEEEEETTEEEEEEEEECCCC--------CCGGGCSEEEEEEET
T ss_pred HHHHHHHHHhC---------CCCCCCcCCceeeEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHccCCCEEEEEEEC
Confidence 67777777543 11234678888887764 23 3356899999999999999999999999999999999
Q ss_pred CCcccHHHHHHHHHHHHhCCCCCCCcEEEEEeCCCCCC--CCCHHHHHhHcCccccCCcceEEEEeeecCCCCHHHHHHH
Q 029517 90 ACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPD--AVSADELARYLDLKKLDERVCMFEAVSGYDGFGIKESVEW 167 (192)
Q Consensus 90 ~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~e~~~~ 167 (192)
+++.+++.+..|+..+..... .+.|+++|+||+|+.. .+..+++.+++. ..+++++++||++|.|++++|++
T Consensus 94 ~~~~s~~~~~~~~~~i~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~gi~~l~~~ 167 (180)
T 2g6b_A 94 TNKASFDNIQAWLTEIHEYAQ-HDVALMLLGNKVDSAHERVVKREDGEKLAK-----EYGLPFMETSAKTGLNVDLAFTA 167 (180)
T ss_dssp TCHHHHHTHHHHHHHHHHHSC-TTCEEEEEEECCSTTSCCCSCHHHHHHHHH-----HHTCCEEECCTTTCTTHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHhCC-CCCcEEEEEECcccCcccccCHHHHHHHHH-----HcCCeEEEEeCCCCCCHHHHHHH
Confidence 999999999999988877543 5789999999999975 455666666665 44678999999999999999999
Q ss_pred HHHHHHhcc
Q 029517 168 LVEVMERSK 176 (192)
Q Consensus 168 i~~~i~~~~ 176 (192)
|.+.+.+..
T Consensus 168 l~~~~~~~~ 176 (180)
T 2g6b_A 168 IAKELKRRS 176 (180)
T ss_dssp HHHHHHC--
T ss_pred HHHHHHHHh
Confidence 999887543
No 22
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=99.93 E-value=4.9e-25 Score=162.65 Aligned_cols=147 Identities=22% Similarity=0.310 Sum_probs=112.7
Q ss_pred ccccHHHHHHHHhhhhccCCCCCCCCCCCCcceEEE--EEEec--CEEEEEEeCCCCcccHHHHHHhhhcCCEEEEEEeC
Q 029517 14 TKTEFHTLLEKLKSVYSNVEGLPPDRIVPTVGLNIG--RIEVS--NSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDA 89 (192)
Q Consensus 14 kst~~~~l~~~~~~~~~~~~~~~~~~~~~T~g~~~~--~~~~~--~~~~~i~D~~G~~~~~~~~~~~~~~~d~ii~v~D~ 89 (192)
|||++|+|++ +.+...+.||+|.++. .+... .+.+.+|||||++++...+..+++++|++|+|+|+
T Consensus 42 KSsli~~l~~----------~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~iilv~D~ 111 (201)
T 2hup_A 42 KTCVVQRFKT----------GAFSERQGSTIGVDFTMKTLEIQGKRVKLQIWDTAGQERFRTITQSYYRSANGAILAYDI 111 (201)
T ss_dssp HHHHHHHHHH----------SCC----------CEEEEEEEETTEEEEEEEECCTTCGGGHHHHHHHHTTCSEEEEEEET
T ss_pred HHHHHHHHhh----------CCCCCCCCCCcceEEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHHhhCCEEEEEEEC
Confidence 5666666543 3455667889887654 34433 47999999999999999999999999999999999
Q ss_pred CCcccHHHHHHHHHHHHhCCCCCCCcEEEEEeCCCCCC--CCCHHHHHhHcCccccCCcce-EEEEeeecCCCCHHHHHH
Q 029517 90 ACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPD--AVSADELARYLDLKKLDERVC-MFEAVSGYDGFGIKESVE 166 (192)
Q Consensus 90 ~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~--~~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~gi~e~~~ 166 (192)
+++.+++.+..|+..+..... .++|+++|+||+|+.+ .+..+++.+++. ..++ +++++||++|.||+++|+
T Consensus 112 ~~~~s~~~~~~~~~~i~~~~~-~~~piilv~NK~Dl~~~~~v~~~~~~~~~~-----~~~~~~~~~~SA~~g~gi~~l~~ 185 (201)
T 2hup_A 112 TKRSSFLSVPHWIEDVRKYAG-SNIVQLLIGNKSDLSELREVSLAEAQSLAE-----HYDILCAIETSAKDSSNVEEAFL 185 (201)
T ss_dssp TBHHHHHTHHHHHHHHHHHSC-TTCEEEEEEECTTCGGGCCSCHHHHHHHHH-----HTTCSEEEECBTTTTBSHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHhcC-CCCCEEEEEECCccccccccCHHHHHHHHH-----HcCCCEEEEEeCCCCCCHHHHHH
Confidence 999999999999998877542 5799999999999975 566777777775 4456 899999999999999999
Q ss_pred HHHHHHHhcc
Q 029517 167 WLVEVMERSK 176 (192)
Q Consensus 167 ~i~~~i~~~~ 176 (192)
+|.+.+.+..
T Consensus 186 ~l~~~i~~~~ 195 (201)
T 2hup_A 186 RVATELIMRH 195 (201)
T ss_dssp HHHHHHHHHT
T ss_pred HHHHHHHHhc
Confidence 9999887654
No 23
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=99.93 E-value=5.7e-25 Score=159.79 Aligned_cols=150 Identities=20% Similarity=0.273 Sum_probs=118.3
Q ss_pred ccccHHHHHHHHhhhhccCCCCCCCCCCCCcceEEEE---EEecCEEEEEEeCCCCcccHHHHHHhhhcCCEEEEEEeCC
Q 029517 14 TKTEFHTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGR---IEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAA 90 (192)
Q Consensus 14 kst~~~~l~~~~~~~~~~~~~~~~~~~~~T~g~~~~~---~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ii~v~D~~ 90 (192)
|||++|+|++ +.+...+.+|.+..+.. +++..+.+.+|||||++.+...+..+++.+|++++|+|++
T Consensus 17 KSsli~~l~~----------~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~ 86 (189)
T 4dsu_A 17 KSALTIQLIQ----------NHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAIN 86 (189)
T ss_dssp HHHHHHHHHH----------SSCCCCCCTTCCEEEEEEEEETTEEEEEEEEECCCC---CTTHHHHHHHCSEEEEEEETT
T ss_pred HHHHHHHHHh----------CCCCCCCCCCchheEEEEEEECCcEEEEEEEECCCcHHHHHHHHHHHhcCCEEEEEEECC
Confidence 7777777764 33455566777655443 3334567999999999999999999999999999999999
Q ss_pred CcccHHHHHHHHHHHHhCCCCCCCcEEEEEeCCCCCC-CCCHHHHHhHcCccccCCcceEEEEeeecCCCCHHHHHHHHH
Q 029517 91 CPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPD-AVSADELARYLDLKKLDERVCMFEAVSGYDGFGIKESVEWLV 169 (192)
Q Consensus 91 ~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~e~~~~i~ 169 (192)
++.+++.+..|+..+.......+.|+++|+||+|+.. ....+++.++.. ..+++++++||++|.|++++|++|.
T Consensus 87 ~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~g~gi~~l~~~l~ 161 (189)
T 4dsu_A 87 NTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKCDLPSRTVDTKQAQDLAR-----SYGIPFIETSAKTRQGVDDAFYTLV 161 (189)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCSCCCEEEEEECTTSSSCSSCHHHHHHHHH-----HHTCCEEECCTTTCTTHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECccCcccccCHHHHHHHHH-----HcCCeEEEEeCCCCCCHHHHHHHHH
Confidence 9999999999999988765546899999999999976 456666666665 4467899999999999999999999
Q ss_pred HHHHhcchh
Q 029517 170 EVMERSKRT 178 (192)
Q Consensus 170 ~~i~~~~~~ 178 (192)
+.+......
T Consensus 162 ~~~~~~~~~ 170 (189)
T 4dsu_A 162 REIRKHKEK 170 (189)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHhhhh
Confidence 988766543
No 24
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=99.93 E-value=7.5e-25 Score=160.27 Aligned_cols=158 Identities=21% Similarity=0.321 Sum_probs=120.8
Q ss_pred ccccHHHHHHHHhhhhccCCCCCCCCCCCCcceEEEE--EEec--CEEEEEEeCCCCcccHHHHHHhhhcCCEEEEEEeC
Q 029517 14 TKTEFHTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGR--IEVS--NSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDA 89 (192)
Q Consensus 14 kst~~~~l~~~~~~~~~~~~~~~~~~~~~T~g~~~~~--~~~~--~~~~~i~D~~G~~~~~~~~~~~~~~~d~ii~v~D~ 89 (192)
|||++|+|++ +.+...+.||++.++.. +... .+.+.+|||||++.+...+..+++.+|++++|+|+
T Consensus 29 KSsli~~l~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~ 98 (196)
T 3tkl_A 29 KSCLLLRFAD----------DTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDV 98 (196)
T ss_dssp HHHHHHHHHH----------SCCCSCCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGCTTHHHHHTTCSEEEEEEET
T ss_pred HHHHHHHHHc----------CCCCCCCCCcccceEEEEEEEECCEEEEEEEEECCCcHhhhhhHHHHHhhCCEEEEEEEC
Confidence 6666666653 44556678888876653 4433 47899999999999999999999999999999999
Q ss_pred CCcccHHHHHHHHHHHHhCCCCCCCcEEEEEeCCCCCC--CCCHHHHHhHcCccccCCcceEEEEeeecCCCCHHHHHHH
Q 029517 90 ACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPD--AVSADELARYLDLKKLDERVCMFEAVSGYDGFGIKESVEW 167 (192)
Q Consensus 90 ~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~e~~~~ 167 (192)
+++.+++.+..|+..+..... .+.|+++|+||+|+.. .+..++..+++. ..+++++++||++|.||+++|++
T Consensus 99 ~~~~s~~~~~~~~~~i~~~~~-~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~g~gv~~l~~~ 172 (196)
T 3tkl_A 99 TDQESFNNVKQWLQEIDRYAS-ENVNKLLVGNKCDLTTKKVVDYTTAKEFAD-----SLGIPFLETSAKNATNVEQSFMT 172 (196)
T ss_dssp TCHHHHHTHHHHHHHHHHHSC-TTCEEEEEEECTTCTTTCCSCHHHHHHHHH-----HTTCCEEEECTTTCTTHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHHHhcC-CCCCEEEEEECcccccccccCHHHHHHHHH-----HcCCcEEEEeCCCCCCHHHHHHH
Confidence 999999999999988877543 4789999999999975 455566666665 44678999999999999999999
Q ss_pred HHHHHHhcchhhhhhhhccc
Q 029517 168 LVEVMERSKRTEMLRARAGA 187 (192)
Q Consensus 168 i~~~i~~~~~~~~~~~~~~~ 187 (192)
|.+.+.+...........+.
T Consensus 173 l~~~i~~~~~~~~~~~~~~~ 192 (196)
T 3tkl_A 173 MAAEIKKRMGPGATAGGAEK 192 (196)
T ss_dssp HHHHHHHHC-----------
T ss_pred HHHHHHHHhccccccCCCcc
Confidence 99999877655444444333
No 25
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=99.92 E-value=1.2e-25 Score=162.60 Aligned_cols=149 Identities=19% Similarity=0.198 Sum_probs=119.7
Q ss_pred ccccHHHHHHHHhhhhccCCCCCCCCCCCCcceEEEE-EEe--cCEEEEEEeCCCCcccHHHHHHhhhcCCEEEEEEeCC
Q 029517 14 TKTEFHTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGR-IEV--SNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAA 90 (192)
Q Consensus 14 kst~~~~l~~~~~~~~~~~~~~~~~~~~~T~g~~~~~-~~~--~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ii~v~D~~ 90 (192)
|||++|+|++ +.+...+.||.+..+.. +.. ..+.+.+|||||++.+...+..+++.+|++++|+|++
T Consensus 19 KSsli~~l~~----------~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~ 88 (181)
T 3t5g_A 19 KSSLTIQFVE----------GQFVDSYDPTIENTFTKLITVNGQEYHLQLVDTAGQDEYSIFPQTYSIDINGYILVYSVT 88 (181)
T ss_dssp HHHHHHHHHH----------SSCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCCCCTTCCCCGGGTTTCSEEEEEEETT
T ss_pred HHHHHHHHHc----------CCCCCCCCCCccccEEEEEEECCEEEEEEEEeCCCchhhhHHHHHHHhcCCEEEEEEECC
Confidence 6777777652 44566778888877643 233 3478999999999999888888999999999999999
Q ss_pred CcccHHHHHHHHHHHHhCCCCCCCcEEEEEeCCCCCC--CCCHHHHHhHcCccccCCcceEEEEeeecCCCCHHHHHHHH
Q 029517 91 CPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPD--AVSADELARYLDLKKLDERVCMFEAVSGYDGFGIKESVEWL 168 (192)
Q Consensus 91 ~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~e~~~~i 168 (192)
++++++.+..|+..+.......++|+++|+||+|+.+ .+..+++.+++. ..+.+++++||++|.|++++|++|
T Consensus 89 ~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~~v~~l~~~l 163 (181)
T 3t5g_A 89 SIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDLHMERVISYEEGKALAE-----SWNAAFLESSAKENQTAVDVFRRI 163 (181)
T ss_dssp CHHHHHHHHHHHHHHHHHC----CCEEEEEECTTCTTTCCSCHHHHHHHHH-----HTTCEEEECCTTSHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccchhcceecHHHHHHHHH-----HhCCcEEEEecCCCCCHHHHHHHH
Confidence 9999999999999987765446799999999999964 567777777776 557799999999999999999999
Q ss_pred HHHHHhcch
Q 029517 169 VEVMERSKR 177 (192)
Q Consensus 169 ~~~i~~~~~ 177 (192)
.+.+.+...
T Consensus 164 ~~~~~~~~~ 172 (181)
T 3t5g_A 164 ILEAEKMDG 172 (181)
T ss_dssp HHHHHTC--
T ss_pred HHHHHHhcC
Confidence 998887653
No 26
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=99.92 E-value=5.2e-25 Score=157.19 Aligned_cols=144 Identities=21% Similarity=0.312 Sum_probs=117.2
Q ss_pred ccccHHHHHHHHhhhhccCCCCCCCCCCCCcceEEEE--EE--ecCEEEEEEeCCCCcccHHHHHHhhhcCCEEEEEEeC
Q 029517 14 TKTEFHTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGR--IE--VSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDA 89 (192)
Q Consensus 14 kst~~~~l~~~~~~~~~~~~~~~~~~~~~T~g~~~~~--~~--~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ii~v~D~ 89 (192)
|||++|+|++ +.+...+.||+|..+.. +. ...+.+.+||+||++++...+..+++.+|++++|+|+
T Consensus 19 Kssli~~l~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~i~v~d~ 88 (170)
T 1r2q_A 19 KSSLVLRFVK----------GQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDI 88 (170)
T ss_dssp HHHHHHHHHH----------SCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTTCSEEEEEEET
T ss_pred HHHHHHHHHc----------CCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCcHHhhhhhHHhccCCCEEEEEEEC
Confidence 6777776654 34455667888877643 32 2367899999999999999999999999999999999
Q ss_pred CCcccHHHHHHHHHHHHhCCCCCCCcEEEEEeCCCCCC--CCCHHHHHhHcCccccCCcceEEEEeeecCCCCHHHHHHH
Q 029517 90 ACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPD--AVSADELARYLDLKKLDERVCMFEAVSGYDGFGIKESVEW 167 (192)
Q Consensus 90 ~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~e~~~~ 167 (192)
+++.+++.+..|+..+..... .+.|+++|+||+|+.+ ....+++.+++. ..+++++++||++|.|++++|++
T Consensus 89 ~~~~s~~~~~~~~~~~~~~~~-~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~g~gi~~l~~~ 162 (170)
T 1r2q_A 89 TNEESFARAKNWVKELQRQAS-PNIVIALSGNKADLANKRAVDFQEAQSYAD-----DNSLLFMETSAKTSMNVNEIFMA 162 (170)
T ss_dssp TCHHHHHHHHHHHHHHHHHSC-TTCEEEEEEECGGGGGGCCSCHHHHHHHHH-----HTTCEEEECCTTTCTTHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHhcC-CCCcEEEEEECccCccccccCHHHHHHHHH-----HcCCeEEEEeCCCCCCHHHHHHH
Confidence 999999999999988877532 5789999999999864 456677777665 45689999999999999999999
Q ss_pred HHHHHH
Q 029517 168 LVEVME 173 (192)
Q Consensus 168 i~~~i~ 173 (192)
|.+.+.
T Consensus 163 i~~~~~ 168 (170)
T 1r2q_A 163 IAKKLP 168 (170)
T ss_dssp HHHTSC
T ss_pred HHHHHh
Confidence 987653
No 27
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=99.92 E-value=1e-24 Score=155.40 Aligned_cols=146 Identities=18% Similarity=0.160 Sum_probs=96.6
Q ss_pred ccccHHHHHHHHhhhhccCCCCCCCCCCCCcceEEE---EEEecCEEEEEEeCCCCcccHHHHHHhhhcCCEEEEEEeCC
Q 029517 14 TKTEFHTLLEKLKSVYSNVEGLPPDRIVPTVGLNIG---RIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAA 90 (192)
Q Consensus 14 kst~~~~l~~~~~~~~~~~~~~~~~~~~~T~g~~~~---~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ii~v~D~~ 90 (192)
|||++|+|.+.. .....++.|..+. .++...+.+.+||+||++.+...+..+++.+|++++|+|++
T Consensus 15 KSsli~~l~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~ 83 (166)
T 3q72_A 15 KSALARIFGGVE-----------DGPEAEAAGHTYDRSIVVDGEEASLMVYDIWEQDGGRWLPGHCMAMGDAYVIVYSVT 83 (166)
T ss_dssp HHHHHHHHCCC---------------------CEEEEEEEETTEEEEEEEEECC---------------CCEEEEEEETT
T ss_pred HHHHHHHHcCcc-----------ccCCCCccccceEEEEEECCEEEEEEEEECCCCccchhhhhhhhhhCCEEEEEEECC
Confidence 677777664321 2223444554443 23345678999999999999999999999999999999999
Q ss_pred CcccHHHHHHHHHHHHhCCCCCCCcEEEEEeCCCCCC--CCCHHHHHhHcCccccCCcceEEEEeeecCCCCHHHHHHHH
Q 029517 91 CPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPD--AVSADELARYLDLKKLDERVCMFEAVSGYDGFGIKESVEWL 168 (192)
Q Consensus 91 ~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~e~~~~i 168 (192)
++.+++.+..|+..+.......++|+++|+||+|+.+ .+..++..++.. ..+.+++++||++|.|++++|++|
T Consensus 84 ~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~gi~~l~~~l 158 (166)
T 3q72_A 84 DKGSFEKASELRVQLRRARQTDDVPIILVGNKSDLVRSREVSVDEGRACAV-----VFDCKFIETSAALHHNVQALFEGV 158 (166)
T ss_dssp CHHHHHHHHHHHHHHHHCC---CCCEEEEEECTTCCSSCCSCHHHHHHHHH-----HTTCEEEECBGGGTBSHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeccccccccccCHHHHHHHHH-----HhCCcEEEeccCCCCCHHHHHHHH
Confidence 9999999999999998765556899999999999975 556666666665 456899999999999999999999
Q ss_pred HHHHHhc
Q 029517 169 VEVMERS 175 (192)
Q Consensus 169 ~~~i~~~ 175 (192)
.+.+...
T Consensus 159 ~~~~~~~ 165 (166)
T 3q72_A 159 VRQIRLR 165 (166)
T ss_dssp HHHHHHH
T ss_pred HHHHHhc
Confidence 9987653
No 28
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=99.92 E-value=2.6e-25 Score=163.93 Aligned_cols=150 Identities=17% Similarity=0.204 Sum_probs=117.6
Q ss_pred ccccHHHHHHHHhhhhccCCCCCCCCCCCCcceEEEE---EEecCEEEEEEeCCCCcccHHHHHHhhhcCCEEEEEEeCC
Q 029517 14 TKTEFHTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGR---IEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAA 90 (192)
Q Consensus 14 kst~~~~l~~~~~~~~~~~~~~~~~~~~~T~g~~~~~---~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ii~v~D~~ 90 (192)
|||++|+|++ +.+...+.||.+..+.. +....+.+.+|||||++.+...+..+++.+|++++|+|++
T Consensus 37 KSsli~~l~~----------~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~ 106 (201)
T 3oes_A 37 KTSLAHQFVE----------GEFSEGYDPTVENTYSKIVTLGKDEFHLHLVDTAGQDEYSILPYSFIIGVHGYVLVYSVT 106 (201)
T ss_dssp HHHHHHHHHH----------SCCCSCCCCCSEEEEEEEEC----CEEEEEEEECCCCTTCCCCGGGTTTCCEEEEEEETT
T ss_pred HHHHHHHHHh----------CCCCCCCCCccceEEEEEEEECCEEEEEEEEECCCccchHHHHHHHHhcCCEEEEEEeCC
Confidence 6666666654 44556778888877643 3345789999999999999888889999999999999999
Q ss_pred CcccHHHHHHHHHHHHhCCCCCCCcEEEEEeCCCCCC--CCCHHHHHhHcCccccCCcceEEEEeeecCCCCHHHHHHHH
Q 029517 91 CPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPD--AVSADELARYLDLKKLDERVCMFEAVSGYDGFGIKESVEWL 168 (192)
Q Consensus 91 ~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~e~~~~i 168 (192)
++.+++.+..|+..+.......++|+++|+||+|+.. .+..++..++.. ..+.+++++||++|.||+++|++|
T Consensus 107 ~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~-----~~~~~~~~~Sa~~~~~v~~l~~~l 181 (201)
T 3oes_A 107 SLHSFQVIESLYQKLHEGHGKTRVPVVLVGNKADLSPEREVQAVEGKKLAE-----SWGATFMESSARENQLTQGIFTKV 181 (201)
T ss_dssp CHHHHHHHHHHHHHHHC-----CCCEEEEEECTTCGGGCCSCHHHHHHHHH-----HHTCEEEECCTTCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccCccccccCHHHHHHHHH-----HhCCeEEEEeCCCCCCHHHHHHHH
Confidence 9999999999999998765446799999999999864 556667766665 456799999999999999999999
Q ss_pred HHHHHhcchh
Q 029517 169 VEVMERSKRT 178 (192)
Q Consensus 169 ~~~i~~~~~~ 178 (192)
.+.+.+....
T Consensus 182 ~~~i~~~~~~ 191 (201)
T 3oes_A 182 IQEIARVENS 191 (201)
T ss_dssp HHHHHHC---
T ss_pred HHHHHhhhhh
Confidence 9998876543
No 29
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=99.92 E-value=3.5e-24 Score=156.13 Aligned_cols=148 Identities=18% Similarity=0.337 Sum_probs=121.6
Q ss_pred ccccHHHHHHHHhhhhccCCCCCCCCCCCCcceEEE---EEEec-----------CEEEEEEeCCCCcccHHHHHHhhhc
Q 029517 14 TKTEFHTLLEKLKSVYSNVEGLPPDRIVPTVGLNIG---RIEVS-----------NSKLVFWDLGGQPGLRSIWEKYYEE 79 (192)
Q Consensus 14 kst~~~~l~~~~~~~~~~~~~~~~~~~~~T~g~~~~---~~~~~-----------~~~~~i~D~~G~~~~~~~~~~~~~~ 79 (192)
|||++|+|++ +.+...+.||+|.++. .+... .+.+.+|||||++.+...+..++++
T Consensus 24 KSsli~~l~~----------~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ 93 (195)
T 3bc1_A 24 KTSVLYQYTD----------GKFNSKFITTVGIDFREKRVVYRANGPDGAVGRGQRIHLQLWDTAGLERFRSLTTAFFRD 93 (195)
T ss_dssp HHHHHHHHHH----------SCCCCSCCCCCSEEEEEEEEEECTTSCCCSSCCCEEEEEEEEEECCSGGGHHHHHHTTTT
T ss_pred HHHHHHHHhc----------CCCCcCcccccceeeeeEEEEEecCCcccccccCcEEEEEEEeCCCcHHHHHHHHHHHcC
Confidence 6666666654 3445667899998776 23322 4799999999999999999999999
Q ss_pred CCEEEEEEeCCCcccHHHHHHHHHHHHhCCCCCCCcEEEEEeCCCCCC--CCCHHHHHhHcCccccCCcceEEEEeeecC
Q 029517 80 AHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPD--AVSADELARYLDLKKLDERVCMFEAVSGYD 157 (192)
Q Consensus 80 ~d~ii~v~D~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 157 (192)
+|++|+|+|++++.+++.+..|+..+.......++|+++|+||+|+.+ .+..+++.+++. ..+++++++||++
T Consensus 94 ~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~ 168 (195)
T 3bc1_A 94 AMGFLLLFDLTNEQSFLNVRNWISQLQMHAYSENPDIVLCGNKSDLEDQRAVKEEEARELAE-----KYGIPYFETSAAN 168 (195)
T ss_dssp CSEEEEEEETTCHHHHHTHHHHHHHHHHHSSSSSCCEEEEEECTTCGGGCCSCHHHHHHHHH-----HHTCCEEECCTTT
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccCHHHHHHHHH-----HcCCCEEEEECCC
Confidence 999999999999999999999999888765445799999999999975 556677777765 4467899999999
Q ss_pred CCCHHHHHHHHHHHHHhcc
Q 029517 158 GFGIKESVEWLVEVMERSK 176 (192)
Q Consensus 158 ~~gi~e~~~~i~~~i~~~~ 176 (192)
|.|++++|++|.+.+.+..
T Consensus 169 ~~~v~~l~~~l~~~~~~~~ 187 (195)
T 3bc1_A 169 GTNISHAIEMLLDLIMKRM 187 (195)
T ss_dssp CTTHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHh
Confidence 9999999999999887654
No 30
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=99.92 E-value=1.5e-24 Score=180.18 Aligned_cols=153 Identities=29% Similarity=0.594 Sum_probs=128.2
Q ss_pred ccccHHHHHHHHhhhhccCCCCCCCCCCCCcceEEEEEEecCEEEEEEeCCCCcccHHHHHHhhhcCCEEEEEEeCCCcc
Q 029517 14 TKTEFHTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPS 93 (192)
Q Consensus 14 kst~~~~l~~~~~~~~~~~~~~~~~~~~~T~g~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ii~v~D~~~~~ 93 (192)
|||++|+|++. . ...+.||+|..+..+...++.+.+|||||++.+...+..+++++|++|+|||++++.
T Consensus 335 KSsLl~~l~~~----------~-~~~~~~T~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~~i~V~D~~~~~ 403 (497)
T 3lvq_E 335 KTTILYKLKLG----------Q-SVTTIPTVGFNVETVTYKNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDCADRD 403 (497)
T ss_dssp HHHHHHHHHHS----------S-CCCCCCCSSEEEEEEESSSCEEEEEEECCCGGGSGGGGGGGTTCCEEEEEEETTCGG
T ss_pred HHHHHHHHhcC----------C-CCCcCCccceeEEEEEeCCEEEEEEECCCcHHHHHHHHHHhccCCEEEEEEECcchh
Confidence 66666666543 2 234578999999999998999999999999999999999999999999999999999
Q ss_pred cHHHHHHHHHHHHhCCCCCCCcEEEEEeCCCCCCCCCHHHHHhHcCccccCCcceEEEEeeecCCCCHHHHHHHHHHHHH
Q 029517 94 RFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAVSADELARYLDLKKLDERVCMFEAVSGYDGFGIKESVEWLVEVME 173 (192)
Q Consensus 94 s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~e~~~~i~~~i~ 173 (192)
+++.+..|+..+.......++|+++|+||+|+.+....+++.+.+........+++++++||++|.||+++|++|.+.+.
T Consensus 404 s~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~~~l~~~~~ 483 (497)
T 3lvq_E 404 RIDEARQELHRIINDREMRDAIILIFANKQDLPDAMKPHEIQEKLGLTRIRDRNWYVQPSCATSGDGLYEGLTWLTSNYK 483 (497)
T ss_dssp GHHHHHHHHHHHHTSGGGTTCEEEEEEECCSSSSCCCHHHHHHHTTCTTCCSSCEEEEECBTTTTBTHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHhhhhhcCCCcEEEEEECCCCCcCCCHHHHHHHhchhhhhcCCeEEEEEECCCCCCHHHHHHHHHHHHH
Confidence 99999999999987654468999999999999887777888887765545566789999999999999999999998776
Q ss_pred hcch
Q 029517 174 RSKR 177 (192)
Q Consensus 174 ~~~~ 177 (192)
+...
T Consensus 484 ~~~~ 487 (497)
T 3lvq_E 484 SKLA 487 (497)
T ss_dssp ----
T ss_pred hcCC
Confidence 5543
No 31
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=99.92 E-value=9.6e-25 Score=155.24 Aligned_cols=146 Identities=22% Similarity=0.292 Sum_probs=117.2
Q ss_pred ccccHHHHHHHHhhhhccCCCCCCCCCCCCcceEEEE-EE--ecCEEEEEEeCCCCcccHHHHHHhhhcCCEEEEEEeCC
Q 029517 14 TKTEFHTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGR-IE--VSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAA 90 (192)
Q Consensus 14 kst~~~~l~~~~~~~~~~~~~~~~~~~~~T~g~~~~~-~~--~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ii~v~D~~ 90 (192)
|||++|+|++ +.+...+.||++..+.. +. ...+.+.+|||||++.+...+..+++++|++++|+|++
T Consensus 16 KSsli~~l~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~ 85 (167)
T 1kao_A 16 KSALTVQFVT----------GTFIEKYDPTIEDFYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFILVYSLV 85 (167)
T ss_dssp HHHHHHHHHH----------SCCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSEEEEEEETT
T ss_pred HHHHHHHHHc----------CCCcccCCCCcceeEEEEEEECCEEEEEEEEECCCchhhHHHHHHHhccCCEEEEEEeCC
Confidence 6777777664 33445667777755432 33 33567999999999999999999999999999999999
Q ss_pred CcccHHHHHHHHHHHHhCCCCCCCcEEEEEeCCCCCC--CCCHHHHHhHcCccccCCcceEEEEeeecCCCCHHHHHHHH
Q 029517 91 CPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPD--AVSADELARYLDLKKLDERVCMFEAVSGYDGFGIKESVEWL 168 (192)
Q Consensus 91 ~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~e~~~~i 168 (192)
++.+++.+..|+..+.......+.|+++|+||+|+.+ ....++..+++. ..+++++++||++|.|++++|++|
T Consensus 86 ~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~gi~~l~~~l 160 (167)
T 1kao_A 86 NQQSFQDIKPMRDQIIRVKRYEKVPVILVGNKVDLESEREVSSSEGRALAE-----EWGCPFMETSAKSKTMVDELFAEI 160 (167)
T ss_dssp CHHHHHHHHHHHHHHHHHTTTSCCCEEEEEECGGGGGGCCSCHHHHHHHHH-----HHTSCEEEECTTCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCcccccccCCHHHHHHHHH-----HhCCCEEEecCCCCcCHHHHHHHH
Confidence 9999999999999888765446899999999999864 455666666665 446789999999999999999999
Q ss_pred HHHHHh
Q 029517 169 VEVMER 174 (192)
Q Consensus 169 ~~~i~~ 174 (192)
.+.+.+
T Consensus 161 ~~~~~~ 166 (167)
T 1kao_A 161 VRQMNY 166 (167)
T ss_dssp HHHHHH
T ss_pred HHHHhh
Confidence 987753
No 32
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=99.92 E-value=7.9e-24 Score=154.13 Aligned_cols=143 Identities=15% Similarity=0.247 Sum_probs=113.7
Q ss_pred ccccHHHHHHHHhhhhccCCCCCCCCCCCCcceEEEEEEec--CEEEEEEeCCCCcccHHHHHHhhhcCCEEEEEEeCCC
Q 029517 14 TKTEFHTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVS--NSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAAC 91 (192)
Q Consensus 14 kst~~~~l~~~~~~~~~~~~~~~~~~~~~T~g~~~~~~~~~--~~~~~i~D~~G~~~~~~~~~~~~~~~d~ii~v~D~~~ 91 (192)
|||++|+|++ +.+...+.||.+.....+... .+.+.+|||+|++.+. +++.+|++++|||+++
T Consensus 33 KSsL~~~~~~----------~~~~~~~~~t~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~-----~~~~~~~~i~v~d~~~ 97 (184)
T 3ihw_A 33 KSALVHRYLT----------GTYVQEESPEGGRFKKEIVVDGQSYLLLIRDEGGPPELQ-----FAAWVDAVVFVFSLED 97 (184)
T ss_dssp HHHHHHHHHH----------SSCCCCCCTTCEEEEEEEEETTEEEEEEEEECSSSCCHH-----HHHHCSEEEEEEETTC
T ss_pred HHHHHHHHhc----------CCCCCCcCCCcceEEEEEEECCEEEEEEEEECCCChhhh-----eecCCCEEEEEEECcC
Confidence 6666666553 445566777755433334433 4789999999999886 7889999999999999
Q ss_pred cccHHHHHHHHHHHHhCCCCCCCcEEEEEeCCCCC----CCCCHHHHHhHcCccccCCc-ceEEEEeeecCCCCHHHHHH
Q 029517 92 PSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLP----DAVSADELARYLDLKKLDER-VCMFEAVSGYDGFGIKESVE 166 (192)
Q Consensus 92 ~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~----~~~~~~~~~~~~~~~~~~~~-~~~~~~~Sa~~~~gi~e~~~ 166 (192)
+.+++.+..|+..+.......+.|+++|+||+|+. ..+..+++.+++. .. ..+++++||++|.||+++|+
T Consensus 98 ~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~v~~~~~~~~~~-----~~~~~~~~e~Sa~~~~gv~~lf~ 172 (184)
T 3ihw_A 98 EISFQTVYNYFLRLCSFRNASEVPMVLVGTQDAISAANPRVIDDSRARKLST-----DLKRCTYYETCATYGLNVERVFQ 172 (184)
T ss_dssp HHHHHHHHHHHHHHHTTSCGGGSCEEEEEECTTCBTTBCCCSCHHHHHHHHH-----HTTTCEEEEEBTTTTBTHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccccCHHHHHHHHH-----HcCCCeEEEecCCCCCCHHHHHH
Confidence 99999999999999876544579999999999994 3577777777776 33 47999999999999999999
Q ss_pred HHHHHHHhcc
Q 029517 167 WLVEVMERSK 176 (192)
Q Consensus 167 ~i~~~i~~~~ 176 (192)
+|.+.+.+.+
T Consensus 173 ~l~~~i~~~~ 182 (184)
T 3ihw_A 173 DVAQKVVALR 182 (184)
T ss_dssp HHHHHHHHHC
T ss_pred HHHHHHHHHh
Confidence 9999887654
No 33
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=99.92 E-value=2.5e-24 Score=153.20 Aligned_cols=146 Identities=17% Similarity=0.236 Sum_probs=116.9
Q ss_pred ccccHHHHHHHHhhhhccCCCCCCCCCCCCcceEEEE-E--EecCEEEEEEeCCCCcccHHHHHHhhhcCCEEEEEEeCC
Q 029517 14 TKTEFHTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGR-I--EVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAA 90 (192)
Q Consensus 14 kst~~~~l~~~~~~~~~~~~~~~~~~~~~T~g~~~~~-~--~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ii~v~D~~ 90 (192)
|||++|+|++. .+...+.||.+..+.. + +...+.+.+||+||++++...+..+++.+|++++|+|++
T Consensus 17 Kssl~~~l~~~----------~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~ 86 (168)
T 1u8z_A 17 KSALTLQFMYD----------EFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLCVFSIT 86 (168)
T ss_dssp HHHHHHHHHHS----------CCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCC---CHHHHHHHHHHCSEEEEEEETT
T ss_pred HHHHHHHHHhC----------ccCCCCCCCcceEEEEEEEECCEEEEEEEEECCCcchhHHHHHHHhhcCCEEEEEEECC
Confidence 67777776643 3455667888776653 3 233578999999999999999999999999999999999
Q ss_pred CcccHHHHHHHHHHHHhCCCCCCCcEEEEEeCCCCCC--CCCHHHHHhHcCccccCCcceEEEEeeecCCCCHHHHHHHH
Q 029517 91 CPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPD--AVSADELARYLDLKKLDERVCMFEAVSGYDGFGIKESVEWL 168 (192)
Q Consensus 91 ~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~e~~~~i 168 (192)
++.+++.+..|+..+.......+.|+++|+||+|+.+ ....+++.+++. ..+++++++||++|.|++++|++|
T Consensus 87 ~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~gi~~l~~~l 161 (168)
T 1u8z_A 87 EMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRAD-----QWNVNYVETSAKTRANVDKVFFDL 161 (168)
T ss_dssp CHHHHHHHHHHHHHHHHHHCCTTSCEEEEEECGGGGGGCCSCHHHHHHHHH-----HHTCEEEECCTTTCTTHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECccccccCccCHHHHHHHHH-----HcCCeEEEeCCCCCCCHHHHHHHH
Confidence 9999999999999988765445799999999999965 466677777775 456789999999999999999999
Q ss_pred HHHHHh
Q 029517 169 VEVMER 174 (192)
Q Consensus 169 ~~~i~~ 174 (192)
.+.+.+
T Consensus 162 ~~~i~~ 167 (168)
T 1u8z_A 162 MREIRA 167 (168)
T ss_dssp HHHHHT
T ss_pred HHHHHh
Confidence 988754
No 34
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=99.92 E-value=4.9e-24 Score=157.07 Aligned_cols=147 Identities=16% Similarity=0.229 Sum_probs=120.7
Q ss_pred ccccHHHHHHHHhhhhccCCCCCCCCCCCCcceEEEE-EEe--cCEEEEEEeCCCCcccHHHHHHhhhcCCEEEEEEeCC
Q 029517 14 TKTEFHTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGR-IEV--SNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAA 90 (192)
Q Consensus 14 kst~~~~l~~~~~~~~~~~~~~~~~~~~~T~g~~~~~-~~~--~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ii~v~D~~ 90 (192)
|||++|+|++ +.+...+.||.+..+.. +.. ..+.+.+|||||++.+...+..+++.+|++++|+|++
T Consensus 27 KSsli~~l~~----------~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~ 96 (206)
T 2bov_A 27 KSALTLQFMY----------DEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLCVFSIT 96 (206)
T ss_dssp HHHHHHHHHH----------SCCCTTCCTTCCEEEEEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSEEEEEEETT
T ss_pred HHHHHHHHHh----------CCCCCCCCCccceEEEEEEEECCEEEEEEEEcCCChhhhHHHHHHHHhhCCEEEEEEECC
Confidence 6666666653 33556678888876542 333 3468999999999999999999999999999999999
Q ss_pred CcccHHHHHHHHHHHHhCCCCCCCcEEEEEeCCCCCC--CCCHHHHHhHcCccccCCcceEEEEeeecCCCCHHHHHHHH
Q 029517 91 CPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPD--AVSADELARYLDLKKLDERVCMFEAVSGYDGFGIKESVEWL 168 (192)
Q Consensus 91 ~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~e~~~~i 168 (192)
+..+++.+..|+..+.......++|+++|+||+|+.+ .+..+++.+++. ..+++++++||++|.||+++|++|
T Consensus 97 ~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~g~gi~~l~~~l 171 (206)
T 2bov_A 97 EMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRAE-----QWNVNYVETSAKTRANVDKVFFDL 171 (206)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCSCCCEEEEEECTTCGGGCCSCHHHHHHHHH-----HHTCEEEEECTTTCTTHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeccCccccccccHHHHHHHHH-----HhCCeEEEEeCCCCCCHHHHHHHH
Confidence 9999999999999988765445899999999999975 466777777775 456789999999999999999999
Q ss_pred HHHHHhc
Q 029517 169 VEVMERS 175 (192)
Q Consensus 169 ~~~i~~~ 175 (192)
.+.+...
T Consensus 172 ~~~i~~~ 178 (206)
T 2bov_A 172 MREIRAR 178 (206)
T ss_dssp HHHHHHH
T ss_pred HHHHHHc
Confidence 9988764
No 35
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=99.92 E-value=1.1e-24 Score=157.32 Aligned_cols=146 Identities=22% Similarity=0.310 Sum_probs=117.5
Q ss_pred ccccHHHHHHHHhhhhccCCCCCCCCCCCCcceEEEE--EEe--cCEEEEEEeCCCCcccHHHHHHhhhcCCEEEEEEeC
Q 029517 14 TKTEFHTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGR--IEV--SNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDA 89 (192)
Q Consensus 14 kst~~~~l~~~~~~~~~~~~~~~~~~~~~T~g~~~~~--~~~--~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ii~v~D~ 89 (192)
|||++|+|++ +.+...+.+|+|.++.. +.. ..+.+.+|||||++++...+..+++.+|++++|+|+
T Consensus 25 KSsli~~l~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~ 94 (181)
T 2efe_B 25 KSSLVLRFVK----------DQFVEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVFDV 94 (181)
T ss_dssp HHHHHHHHHH----------CCCTTTSCCCSCCSEEEEEEEETTEEEEEEEEECCCSGGGGGGTHHHHTTCSEEEEEEET
T ss_pred HHHHHHHHHc----------CCCCCcCCCCceeEEEEEEEEECCEEEEEEEEeCCCChhhhhhhHHHhccCCEEEEEEEC
Confidence 6777666653 34455667788766543 332 357899999999999999999999999999999999
Q ss_pred CCcccHHHHHHHHHHHHhCCCCCCCcEEEEEeCCCCCC--CCCHHHHHhHcCccccCCcceEEEEeeecCCCCHHHHHHH
Q 029517 90 ACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPD--AVSADELARYLDLKKLDERVCMFEAVSGYDGFGIKESVEW 167 (192)
Q Consensus 90 ~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~e~~~~ 167 (192)
+++.+++.+..|+..+..... .+.|+++|+||+|+.+ .+..+++.+++. ..+++++++||++|.|++++|++
T Consensus 95 ~~~~s~~~~~~~~~~~~~~~~-~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~g~gi~~l~~~ 168 (181)
T 2efe_B 95 TNQASFERAKKWVQELQAQGN-PNMVMALAGNKSDLLDARKVTAEDAQTYAQ-----ENGLFFMETSAKTATNVKEIFYE 168 (181)
T ss_dssp TCHHHHHHHHHHHHHHHHHSC-TTCEEEEEEECTTCTTTCCSCHHHHHHHHH-----HTTCEEEECCSSSCTTHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHhcC-CCCcEEEEEECCcccccccCCHHHHHHHHH-----HcCCEEEEEECCCCCCHHHHHHH
Confidence 999999999999998887642 4789999999999965 456677777775 45678999999999999999999
Q ss_pred HHHHHHhc
Q 029517 168 LVEVMERS 175 (192)
Q Consensus 168 i~~~i~~~ 175 (192)
|.+.+...
T Consensus 169 l~~~~~~~ 176 (181)
T 2efe_B 169 IARRLPRV 176 (181)
T ss_dssp HHHTCC--
T ss_pred HHHHHHhc
Confidence 99876554
No 36
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=99.92 E-value=1.3e-24 Score=156.53 Aligned_cols=145 Identities=21% Similarity=0.332 Sum_probs=117.3
Q ss_pred ccccHHHHHHHHhhhhccCCCCCCCCCCCCcceEEEE--EE--ecCEEEEEEeCCCCcccHHHHHHhhhcCCEEEEEEeC
Q 029517 14 TKTEFHTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGR--IE--VSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDA 89 (192)
Q Consensus 14 kst~~~~l~~~~~~~~~~~~~~~~~~~~~T~g~~~~~--~~--~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ii~v~D~ 89 (192)
|||++|+|++ +.+...+.+|+|.++.. +. ...+.+.+|||||++++...+..+++++|++++|+|+
T Consensus 28 KSsli~~l~~----------~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~ 97 (179)
T 1z0f_A 28 KSCLLHQFTE----------KKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVYDI 97 (179)
T ss_dssp HHHHHHHHHH----------SCCCSSCTTSCCCCEEEEEEEETTEEEEEEEEECTTGGGTCHHHHHHHHTCSEEEEEEET
T ss_pred HHHHHHHHHc----------CCCCCCCCCccceEEEEEEEEECCeEEEEEEEECCCChHhhhhHHHHhccCCEEEEEEeC
Confidence 6666666654 33455667888766543 33 3457899999999999999999999999999999999
Q ss_pred CCcccHHHHHHHHHHHHhCCCCCCCcEEEEEeCCCCCC--CCCHHHHHhHcCccccCCcceEEEEeeecCCCCHHHHHHH
Q 029517 90 ACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPD--AVSADELARYLDLKKLDERVCMFEAVSGYDGFGIKESVEW 167 (192)
Q Consensus 90 ~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~e~~~~ 167 (192)
+++.+++.+..|+..+..... .+.|+++|+||+|+.+ .+..+++.+++. ..+++++++||++|.||+++|++
T Consensus 98 ~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~gi~~l~~~ 171 (179)
T 1z0f_A 98 TRRSTYNHLSSWLTDARNLTN-PNTVIILIGNKADLEAQRDVTYEEAKQFAE-----ENGLLFLEASAKTGENVEDAFLE 171 (179)
T ss_dssp TCHHHHHTHHHHHHHHHHHSC-TTCEEEEEEECTTCGGGCCSCHHHHHHHHH-----HTTCEEEECCTTTCTTHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHHHhcC-CCCcEEEEEECcccccccccCHHHHHHHHH-----HcCCEEEEEeCCCCCCHHHHHHH
Confidence 999999999999988877543 4789999999999964 456677777775 45689999999999999999999
Q ss_pred HHHHHHh
Q 029517 168 LVEVMER 174 (192)
Q Consensus 168 i~~~i~~ 174 (192)
|.+.+.+
T Consensus 172 l~~~i~~ 178 (179)
T 1z0f_A 172 AAKKIYQ 178 (179)
T ss_dssp HHHHHC-
T ss_pred HHHHHhh
Confidence 9987753
No 37
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=99.92 E-value=1.2e-24 Score=156.26 Aligned_cols=147 Identities=19% Similarity=0.181 Sum_probs=104.7
Q ss_pred ccccHHHHHHHHhhhhccCCCCCCCCCCCCcceEEE--EE--EecCEEEEEEeCCCCcc--cHHHHHHhhhcCCEEEEEE
Q 029517 14 TKTEFHTLLEKLKSVYSNVEGLPPDRIVPTVGLNIG--RI--EVSNSKLVFWDLGGQPG--LRSIWEKYYEEAHAVVFVI 87 (192)
Q Consensus 14 kst~~~~l~~~~~~~~~~~~~~~~~~~~~T~g~~~~--~~--~~~~~~~~i~D~~G~~~--~~~~~~~~~~~~d~ii~v~ 87 (192)
|||++|+|++... .. ..+|.|.+.. .+ ++..+.+.+|||||++. +......+++.+|++++|+
T Consensus 17 KSsl~~~l~~~~~----------~~-~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~~~i~v~ 85 (175)
T 2nzj_A 17 KTSLASLFAGKQE----------RD-LHEQLGEDVYERTLTVDGEDTTLVVVDTWEAEKLDKSWSQESCLQGGSAYVIVY 85 (175)
T ss_dssp HHHHHHHHHCC----------------CCCSSSSEEEEEEEETTEEEEEEEECCC-------CHHHHHTTTSCSEEEEEE
T ss_pred HHHHHHHHhcCCC----------cc-ccCccccceeEEEEEECCEEEEEEEEecCCCCccchhhhHHhhcccCCEEEEEE
Confidence 7777777764321 11 1233443332 23 33456899999999987 5566778899999999999
Q ss_pred eCCCcccHHHHHHHHHHHHhCCCCCCCcEEEEEeCCCCCC--CCCHHHHHhHcCccccCCcceEEEEeeecCCCCHHHHH
Q 029517 88 DAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPD--AVSADELARYLDLKKLDERVCMFEAVSGYDGFGIKESV 165 (192)
Q Consensus 88 D~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~e~~ 165 (192)
|++++.+++.+..|+..+.......++|+++|+||+|+.+ .+..++...+.. ..+++++++||++|.||+++|
T Consensus 86 d~~~~~s~~~~~~~~~~l~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~-----~~~~~~~~~Sa~~g~gi~~l~ 160 (175)
T 2nzj_A 86 SIADRGSFESASELRIQLRRTHQADHVPIILVGNKADLARCREVSVEEGRACAV-----VFDCKFIETSATLQHNVAELF 160 (175)
T ss_dssp ETTCHHHHHHHHHHHHHHHHCC----CCEEEEEECTTCTTTCCSCHHHHHHHHH-----HHTSEEEECBTTTTBSHHHHH
T ss_pred ECCCHHHHHHHHHHHHHHHHhhccCCCCEEEEEEChhhccccccCHHHHHHHHH-----HcCCeEEEEecCCCCCHHHHH
Confidence 9999999999999998888764445799999999999975 455666666654 346799999999999999999
Q ss_pred HHHHHHHHhcc
Q 029517 166 EWLVEVMERSK 176 (192)
Q Consensus 166 ~~i~~~i~~~~ 176 (192)
++|.+.+...+
T Consensus 161 ~~l~~~~~~~~ 171 (175)
T 2nzj_A 161 EGVVRQLRLRR 171 (175)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHhh
Confidence 99999886544
No 38
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=99.92 E-value=3.9e-24 Score=156.24 Aligned_cols=148 Identities=20% Similarity=0.304 Sum_probs=121.2
Q ss_pred ccccHHHHHHHHhhhhccCCCCCCCCCCCCcceEEEE--EE--ecCEEEEEEeCCCCcccHHHHHHhhhcCCEEEEEEeC
Q 029517 14 TKTEFHTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGR--IE--VSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDA 89 (192)
Q Consensus 14 kst~~~~l~~~~~~~~~~~~~~~~~~~~~T~g~~~~~--~~--~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ii~v~D~ 89 (192)
|||++|+|++ +.+...+.||+|.++.. +. ...+.+.+|||||++++...+..+++.+|++|+|+|+
T Consensus 28 Kssli~~l~~----------~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~ 97 (195)
T 1x3s_A 28 KSSLLLRFTD----------DTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQERFRTLTPSYYRGAQGVILVYDV 97 (195)
T ss_dssp HHHHHHHHHH----------SCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECSSGGGCCSHHHHHTTCCEEEEEEET
T ss_pred HHHHHHHHHc----------CCCCccCCCccceEEEEEEEEECCeEEEEEEEeCCCchhhhhhhHHHhccCCEEEEEEEC
Confidence 6666666643 34456678888877653 33 3457899999999999988999999999999999999
Q ss_pred CCcccHHHHHHHHHHHHhCCCCCCCcEEEEEeCCCCCC-CCCHHHHHhHcCccccCCcceEEEEeeecCCCCHHHHHHHH
Q 029517 90 ACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPD-AVSADELARYLDLKKLDERVCMFEAVSGYDGFGIKESVEWL 168 (192)
Q Consensus 90 ~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~e~~~~i 168 (192)
+++.+++.+..|+..+.......++|+++|+||+|+.. .+..+++.+++. ..+++++++||++|.||+++|++|
T Consensus 98 ~~~~s~~~~~~~~~~i~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~gi~~l~~~l 172 (195)
T 1x3s_A 98 TRRDTFVKLDNWLNELETYCTRNDIVNMLVGNKIDKENREVDRNEGLKFAR-----KHSMLFIEASAKTCDGVQCAFEEL 172 (195)
T ss_dssp TCHHHHHTHHHHHHHHTTCCSCSCCEEEEEEECTTSSSCCSCHHHHHHHHH-----HTTCEEEECCTTTCTTHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHHHhcCcCCCcEEEEEECCcCcccccCHHHHHHHHH-----HcCCEEEEecCCCCCCHHHHHHHH
Confidence 99999999999999988765446799999999999965 456677777765 456889999999999999999999
Q ss_pred HHHHHhcc
Q 029517 169 VEVMERSK 176 (192)
Q Consensus 169 ~~~i~~~~ 176 (192)
.+.+.+..
T Consensus 173 ~~~~~~~~ 180 (195)
T 1x3s_A 173 VEKIIQTP 180 (195)
T ss_dssp HHHHHTSG
T ss_pred HHHHHhhh
Confidence 99887654
No 39
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=99.92 E-value=1.9e-24 Score=153.99 Aligned_cols=146 Identities=19% Similarity=0.318 Sum_probs=118.2
Q ss_pred ccccHHHHHHHHhhhhccCCCCCCCCCCCCcceEEEE---EEecCEEEEEEeCCCCcccHHHHHHhhhcCCEEEEEEeCC
Q 029517 14 TKTEFHTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGR---IEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAA 90 (192)
Q Consensus 14 kst~~~~l~~~~~~~~~~~~~~~~~~~~~T~g~~~~~---~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ii~v~D~~ 90 (192)
|||++|+|++ +.+...+.||++..+.. ++...+.+.+|||||++++...+..+++++|++++|+|++
T Consensus 16 Kssli~~l~~----------~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~ 85 (167)
T 1c1y_A 16 KSALTVQFVQ----------GIFVEKYDPTIEDSYRKQVEVDCQQCMLEILDTAGTEQFTAMRDLYMKNGQGFALVYSIT 85 (167)
T ss_dssp HHHHHHHHHH----------CCCCCSCCCCSEEEEEEEEESSSCEEEEEEEEECSSCSSTTHHHHHHHHCSEEEEEEETT
T ss_pred HHHHHHHHHc----------CCCCCCCCCCccceEEEEEEECCEEEEEEEEECCChHHHHHHHHHHhccCCEEEEEEECC
Confidence 6777777764 34456678888877653 2234678999999999999999999999999999999999
Q ss_pred CcccHHHHHHHHHHHHhCCCCCCCcEEEEEeCCCCCC--CCCHHHHHhHcCccccCCcceEEEEeeecCCCCHHHHHHHH
Q 029517 91 CPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPD--AVSADELARYLDLKKLDERVCMFEAVSGYDGFGIKESVEWL 168 (192)
Q Consensus 91 ~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~e~~~~i 168 (192)
++.+++.+..|+..+.......+.|+++|+||+|+.+ .+..+++.+++. ...+.+++++||++|.|++++|++|
T Consensus 86 ~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~----~~~~~~~~~~Sa~~~~gi~~l~~~l 161 (167)
T 1c1y_A 86 AQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDERVVGKEQGQNLAR----QWCNCAFLESSAKSKINVNEIFYDL 161 (167)
T ss_dssp CHHHHHTHHHHHHHHHHHHCCSCCCEEEEEECTTCGGGCCSCHHHHHHHHH----HTTSCEEEECBTTTTBSHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHhhCcCCCcEEEEEECccccccccCCHHHHHHHHH----HccCCcEEEecCCCCCCHHHHHHHH
Confidence 9999999999988887753336899999999999965 455667776665 1226899999999999999999999
Q ss_pred HHHHH
Q 029517 169 VEVME 173 (192)
Q Consensus 169 ~~~i~ 173 (192)
.+.+.
T Consensus 162 ~~~i~ 166 (167)
T 1c1y_A 162 VRQIN 166 (167)
T ss_dssp HHHHT
T ss_pred HHHHh
Confidence 98764
No 40
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=99.92 E-value=6.4e-25 Score=163.60 Aligned_cols=147 Identities=18% Similarity=0.245 Sum_probs=119.4
Q ss_pred ccccHHHHHHHHhhhhccCCCCCCCCCCCCcceEEEE---EEecCEEEEEEeCCCCcccHHHHHHhhhcCCEEEEEEeCC
Q 029517 14 TKTEFHTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGR---IEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAA 90 (192)
Q Consensus 14 kst~~~~l~~~~~~~~~~~~~~~~~~~~~T~g~~~~~---~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ii~v~D~~ 90 (192)
|||++|+|+ . +.+...+.||++..+.. ++...+.+.+|||+|++++...+..+++++|++|+|||++
T Consensus 40 KSsL~~~l~----~------~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~ 109 (214)
T 3q3j_B 40 KTAMLQVLA----K------DCYPETYVPTVFENYTACLETEEQRVELSLWDTSGSPYYDNVRPLCYSDSDAVLLCFDIS 109 (214)
T ss_dssp HHHHHHHHH----H------SCCCSSCCCCSEEEEEEEEEC--CEEEEEEEEECCSGGGTTTGGGGCTTCSEEEEEEETT
T ss_pred HHHHHHHHh----c------CCCCCCcCCeeeeeEEEEEEECCEEEEEEEEECCCCHhHHHHHHHHcCCCeEEEEEEECc
Confidence 555555554 4 45677889999988763 3345689999999999999999999999999999999999
Q ss_pred CcccHHH-HHHHHHHHHhCCCCCCCcEEEEEeCCCCCC--------------CCCHHHHHhHcCccccCCcce-EEEEee
Q 029517 91 CPSRFED-SKTALEKVLRNEDLQGAPLLILANKQDLPD--------------AVSADELARYLDLKKLDERVC-MFEAVS 154 (192)
Q Consensus 91 ~~~s~~~-~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~--------------~~~~~~~~~~~~~~~~~~~~~-~~~~~S 154 (192)
++.+++. +..|+..+.... .+.|+++|+||+|+.+ .+..+++.+++. ..++ +++++|
T Consensus 110 ~~~s~~~~~~~~~~~i~~~~--~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~-----~~~~~~~~e~S 182 (214)
T 3q3j_B 110 RPETVDSALKKWRTEILDYC--PSTRVLLIGCKTDLRTDLSTLMELSHQKQAPISYEQGCAIAK-----QLGAEIYLEGS 182 (214)
T ss_dssp CTHHHHHHHTHHHHHHHHHC--TTSEEEEEEECGGGGGCHHHHHHHHHTTCCCCCHHHHHHHHH-----HHTCSEEEECC
T ss_pred CHHHHHHHHHHHHHHHHHhC--CCCCEEEEEEChhhccchhhhhhhcccccCccCHHHHHHHHH-----HcCCCEEEEec
Confidence 9999998 688988887764 5799999999999963 467777777776 4566 999999
Q ss_pred ecCCCC-HHHHHHHHHHHHHhcch
Q 029517 155 GYDGFG-IKESVEWLVEVMERSKR 177 (192)
Q Consensus 155 a~~~~g-i~e~~~~i~~~i~~~~~ 177 (192)
|++|.| |+++|++|.+.+.....
T Consensus 183 A~~g~g~v~~lf~~l~~~~~~~~~ 206 (214)
T 3q3j_B 183 AFTSEKSIHSIFRTASMLCLNKPS 206 (214)
T ss_dssp TTTCHHHHHHHHHHHHHHHHC---
T ss_pred cCCCcccHHHHHHHHHHHHhccCc
Confidence 999998 99999999998876553
No 41
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=99.92 E-value=1.1e-24 Score=158.84 Aligned_cols=146 Identities=23% Similarity=0.360 Sum_probs=114.7
Q ss_pred ccccHHHHHHHHhhhhccCCCCCCCCCCCCcceEEEE--EEec--CEEEEEEeCCCCcccH-HHHHHhhhcCCEEEEEEe
Q 029517 14 TKTEFHTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGR--IEVS--NSKLVFWDLGGQPGLR-SIWEKYYEEAHAVVFVID 88 (192)
Q Consensus 14 kst~~~~l~~~~~~~~~~~~~~~~~~~~~T~g~~~~~--~~~~--~~~~~i~D~~G~~~~~-~~~~~~~~~~d~ii~v~D 88 (192)
|||++|+|++ +.+...+.||++.++.. +... .+.+.+|||||++++. ..+..+++++|++|+|+|
T Consensus 33 KSsli~~l~~----------~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~d~iilv~D 102 (189)
T 1z06_A 33 KTCLTYRFCA----------GRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQERFRKSMVQHYYRNVHAVVFVYD 102 (189)
T ss_dssp HHHHHHHHHH----------SSCCSSCCCCCSCCEEEEEEEETTEEEEEEEEECCCSHHHHTTTHHHHHTTCCEEEEEEE
T ss_pred HHHHHHHHHc----------CCCCCCCCCCcceEEEEEEEEECCEEEEEEEEECCCchhhhhhhhHHHhcCCCEEEEEEE
Confidence 6666666654 34455667888866543 3333 4789999999999998 788999999999999999
Q ss_pred CCCcccHHHHHHHHHHHHhCCCCCCCcEEEEEeCCCCCC--CCCHHHHHhHcCccccCCcceEEEEeeecCC---CCHHH
Q 029517 89 AACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPD--AVSADELARYLDLKKLDERVCMFEAVSGYDG---FGIKE 163 (192)
Q Consensus 89 ~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~---~gi~e 163 (192)
++++.+++.+..|+..+.......+.|+++|+||+|+.+ .+..+++.+++. ..+++++++||++| .||++
T Consensus 103 ~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~-----~~~~~~~~~Sa~~~~~~~~i~~ 177 (189)
T 1z06_A 103 MTNMASFHSLPAWIEECKQHLLANDIPRILVGNKCDLRSAIQVPTDLAQKFAD-----THSMPLFETSAKNPNDNDHVEA 177 (189)
T ss_dssp TTCHHHHHTHHHHHHHHHHHCCCSCCCEEEEEECTTCGGGCCSCHHHHHHHHH-----HTTCCEEECCSSSGGGGSCHHH
T ss_pred CcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccceeCHHHHHHHHH-----HcCCEEEEEeCCcCCcccCHHH
Confidence 999999999999999988765446899999999999965 456667766665 44678999999999 99999
Q ss_pred HHHHHHHHHHh
Q 029517 164 SVEWLVEVMER 174 (192)
Q Consensus 164 ~~~~i~~~i~~ 174 (192)
+|++|.+.+.+
T Consensus 178 l~~~l~~~i~~ 188 (189)
T 1z06_A 178 IFMTLAHKLKS 188 (189)
T ss_dssp HHHHHC-----
T ss_pred HHHHHHHHHhh
Confidence 99999887643
No 42
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=99.92 E-value=9.2e-25 Score=156.11 Aligned_cols=117 Identities=17% Similarity=0.218 Sum_probs=96.2
Q ss_pred cCEEEEEEeCCCCcccHH-HHHHhhhcCCEEEEEEeCCCcccHHHHHHHHHHHHhCCCCCCCcEEEEEeCCCCCC--CCC
Q 029517 54 SNSKLVFWDLGGQPGLRS-IWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPD--AVS 130 (192)
Q Consensus 54 ~~~~~~i~D~~G~~~~~~-~~~~~~~~~d~ii~v~D~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~--~~~ 130 (192)
..+.+.+||+||++.+.. .+..+++.+|++++|+|++++++++.+..|+..+.......++|+++|+||+|+.+ .+.
T Consensus 49 ~~~~~~i~D~~g~~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~ 128 (169)
T 3q85_A 49 EEVTLIVYDIWEQGDAGGWLQDHCLQTGDAFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLARSREVS 128 (169)
T ss_dssp EEEEEEEECCCCC--------CHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHSTTSCCCEEEEEECTTCGGGCCSC
T ss_pred eEEEEEEEECCCccccchhhhhhhhccCCEEEEEEECCChHHHHHHHHHHHHHHhcccCCCCCEEEEeeCcchhhcccCC
Confidence 457899999999998876 67778899999999999999999999999999998865445899999999999974 667
Q ss_pred HHHHHhHcCccccCCcceEEEEeeecCCCCHHHHHHHHHHHHHhc
Q 029517 131 ADELARYLDLKKLDERVCMFEAVSGYDGFGIKESVEWLVEVMERS 175 (192)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~e~~~~i~~~i~~~ 175 (192)
.+++.+++. ..+++++++||++|.|++++|+++.+.+...
T Consensus 129 ~~~~~~~~~-----~~~~~~~~~Sa~~~~~v~~l~~~l~~~i~~~ 168 (169)
T 3q85_A 129 LEEGRHLAG-----TLSCKHIETSAALHHNTRELFEGAVRQIRLR 168 (169)
T ss_dssp HHHHHHHHH-----HTTCEEEECBTTTTBSHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHH-----HcCCcEEEecCccCCCHHHHHHHHHHHHHhc
Confidence 777777776 5577999999999999999999999987654
No 43
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.92 E-value=5.7e-25 Score=160.77 Aligned_cols=148 Identities=18% Similarity=0.269 Sum_probs=120.4
Q ss_pred hccccHHHHHHHHhhhhccCCCCCCCCCCCCcceEEEE----EEecCEEEEEEeCCCCcccHHHHHHhhhcCCEEEEEEe
Q 029517 13 FTKTEFHTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGR----IEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVID 88 (192)
Q Consensus 13 ~kst~~~~l~~~~~~~~~~~~~~~~~~~~~T~g~~~~~----~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ii~v~D 88 (192)
=|||++|+|++. .+...+.||.|.++.. +....+.+.+|||||++.+...+..+++++|++++|+|
T Consensus 35 GKSsli~~l~~~----------~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d 104 (191)
T 3dz8_A 35 GKTSFLFRYADD----------TFTPAFVSTVGIDFKVKTVYRHEKRVKLQIWDTAGQERYRTITTAYYRGAMGFILMYD 104 (191)
T ss_dssp SHHHHHHHHHHH----------TTCCCEEEEETTTEEEEEEEETTTTEEEEEECHHHHHHCHHHHHHHHTTCCEEEEEEE
T ss_pred CHHHHHHHHhcC----------CCCcccCCCeeeEEEEEEEEECCEEEEEEEEeCCChHHHHHHHHHHHccCCEEEEEEE
Confidence 377777777654 3345566777755543 23457899999999999999999999999999999999
Q ss_pred CCCcccHHHHHHHHHHHHhCCCCCCCcEEEEEeCCCCCC--CCCHHHHHhHcCccccCCcceEEEEeeecCCCCHHHHHH
Q 029517 89 AACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPD--AVSADELARYLDLKKLDERVCMFEAVSGYDGFGIKESVE 166 (192)
Q Consensus 89 ~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~e~~~ 166 (192)
++++.+++.+..|+..+..... .+.|+++|+||+|+.+ .+..+++..++. ..+++++++||++|.||+++|+
T Consensus 105 ~~~~~s~~~~~~~~~~i~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~gi~~l~~ 178 (191)
T 3dz8_A 105 ITNEESFNAVQDWATQIKTYSW-DNAQVILVGNKCDMEEERVVPTEKGQLLAE-----QLGFDFFEASAKENISVRQAFE 178 (191)
T ss_dssp TTCHHHHHTHHHHHHHHHHHSC-TTCEEEEEEECTTCGGGCCSCHHHHHHHHH-----HHTCEEEECBTTTTBSHHHHHH
T ss_pred CcCHHHHHHHHHHHHHHHHhcC-CCCCEEEEEECCCCccccccCHHHHHHHHH-----HcCCeEEEEECCCCCCHHHHHH
Confidence 9999999999999998877532 5799999999999865 456666766665 4567999999999999999999
Q ss_pred HHHHHHHhcc
Q 029517 167 WLVEVMERSK 176 (192)
Q Consensus 167 ~i~~~i~~~~ 176 (192)
+|.+.+.+..
T Consensus 179 ~l~~~i~~~~ 188 (191)
T 3dz8_A 179 RLVDAICDKM 188 (191)
T ss_dssp HHHHHHHHHC
T ss_pred HHHHHHHHhc
Confidence 9999887654
No 44
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=99.91 E-value=5.6e-24 Score=154.18 Aligned_cols=148 Identities=17% Similarity=0.235 Sum_probs=121.0
Q ss_pred ccccHHHHHHHHhhhhccCCCCCCCCCCCCcceEEEE-EEe--cCEEEEEEeCCCCcccHHHHHHhhhcCCEEEEEEeCC
Q 029517 14 TKTEFHTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGR-IEV--SNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAA 90 (192)
Q Consensus 14 kst~~~~l~~~~~~~~~~~~~~~~~~~~~T~g~~~~~-~~~--~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ii~v~D~~ 90 (192)
|||++|+|++ +.+...+.||.+..+.. +.. ..+.+.+|||||++++...+..+++.+|++++|+|++
T Consensus 31 KSsli~~l~~----------~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~ 100 (187)
T 2a9k_A 31 KSALTLQFMY----------DEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLCVFSIT 100 (187)
T ss_dssp HHHHHHHHHH----------SCCCCSCCTTCCEEEEEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSEEEEEEETT
T ss_pred HHHHHHHHhh----------CCCCCcCCCccceEEEEEEEECCEEEEEEEEECCCCcccHHHHHHHhccCCEEEEEEECc
Confidence 6666666654 33556678888877653 333 3468999999999999999999999999999999999
Q ss_pred CcccHHHHHHHHHHHHhCCCCCCCcEEEEEeCCCCCC--CCCHHHHHhHcCccccCCcceEEEEeeecCCCCHHHHHHHH
Q 029517 91 CPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPD--AVSADELARYLDLKKLDERVCMFEAVSGYDGFGIKESVEWL 168 (192)
Q Consensus 91 ~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~e~~~~i 168 (192)
++.+++.+..|+..+.......++|+++|+||+|+.+ .+..+++.+++. ..+++++++||++|.||+++|++|
T Consensus 101 ~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~gi~~l~~~l 175 (187)
T 2a9k_A 101 EMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRAE-----QWNVNYVETSAKTRANVDKVFFDL 175 (187)
T ss_dssp CHHHHHHHHHHHHHHHHHHCCTTCCEEEEEECGGGGGGCCSCHHHHHHHHH-----HTTCEEEECCTTTCTTHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccCccCHHHHHHHHH-----HcCCeEEEeCCCCCCCHHHHHHHH
Confidence 9999999999999888765445799999999999865 466677777775 456799999999999999999999
Q ss_pred HHHHHhcc
Q 029517 169 VEVMERSK 176 (192)
Q Consensus 169 ~~~i~~~~ 176 (192)
.+.+.+.+
T Consensus 176 ~~~i~~~~ 183 (187)
T 2a9k_A 176 MREIRARK 183 (187)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHhh
Confidence 99886543
No 45
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=99.91 E-value=7.3e-24 Score=153.76 Aligned_cols=148 Identities=24% Similarity=0.344 Sum_probs=120.3
Q ss_pred ccccHHHHHHHHhhhhccCCCCCCCCCCCCcceEEEE--EEec--CEEEEEEeCCCCcccHHHHHHhhhcCCEEEEEEeC
Q 029517 14 TKTEFHTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGR--IEVS--NSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDA 89 (192)
Q Consensus 14 kst~~~~l~~~~~~~~~~~~~~~~~~~~~T~g~~~~~--~~~~--~~~~~i~D~~G~~~~~~~~~~~~~~~d~ii~v~D~ 89 (192)
|||++|+|++ +.+...+.||++.++.. +... .+.+.+|||||++.+...+..+++++|++|+|+|+
T Consensus 23 KSsli~~l~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~ 92 (186)
T 2bme_A 23 KSCLLHQFIE----------KKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQERFRSVTRSYYRGAAGALLVYDI 92 (186)
T ss_dssp HHHHHHHHHH----------SSCCTTCCCCSEEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTSTTCSEEEEEEET
T ss_pred HHHHHHHHHc----------CCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHHhcCCEEEEEEEC
Confidence 6777666653 34455678888876643 3333 37899999999999999999999999999999999
Q ss_pred CCcccHHHHHHHHHHHHhCCCCCCCcEEEEEeCCCCCC--CCCHHHHHhHcCccccCCcceEEEEeeecCCCCHHHHHHH
Q 029517 90 ACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPD--AVSADELARYLDLKKLDERVCMFEAVSGYDGFGIKESVEW 167 (192)
Q Consensus 90 ~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~e~~~~ 167 (192)
+++.+++.+..|+..+..... .+.|+++|+||+|+.. .+..+++.+++. ..+++++++||++|.||+++|++
T Consensus 93 ~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~gi~~l~~~ 166 (186)
T 2bme_A 93 TSRETYNALTNWLTDARMLAS-QNIVIILCGNKKDLDADREVTFLEASRFAQ-----ENELMFLETSALTGENVEEAFVQ 166 (186)
T ss_dssp TCHHHHHTHHHHHHHHHHHSC-TTCEEEEEEECGGGGGGCCSCHHHHHHHHH-----HTTCEEEECCTTTCTTHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHHHhcC-CCCcEEEEEECcccccccccCHHHHHHHHH-----HcCCEEEEecCCCCCCHHHHHHH
Confidence 999999999999988776533 5789999999999964 566677777665 45689999999999999999999
Q ss_pred HHHHHHhcch
Q 029517 168 LVEVMERSKR 177 (192)
Q Consensus 168 i~~~i~~~~~ 177 (192)
+.+.+.+...
T Consensus 167 l~~~~~~~~~ 176 (186)
T 2bme_A 167 CARKILNKIE 176 (186)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHhh
Confidence 9998876543
No 46
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=99.91 E-value=1.3e-24 Score=160.23 Aligned_cols=152 Identities=17% Similarity=0.182 Sum_probs=96.2
Q ss_pred hccccHHHHHHHHhhhhccCCCCCCCCCCCCcceEEE--EEEec----CEEEEEEeCCCCcccHHHHHHhhhcCCEEEEE
Q 029517 13 FTKTEFHTLLEKLKSVYSNVEGLPPDRIVPTVGLNIG--RIEVS----NSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFV 86 (192)
Q Consensus 13 ~kst~~~~l~~~~~~~~~~~~~~~~~~~~~T~g~~~~--~~~~~----~~~~~i~D~~G~~~~~~~~~~~~~~~d~ii~v 86 (192)
=|||++|+|++.-. .+...+.||+|.++. .+... .+.+.+|||||++.+...+..+++++|++|+|
T Consensus 32 GKssli~~l~~~~~--------~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v 103 (208)
T 2yc2_C 32 GKSALISMFTSKGS--------KFLKDYAMTSGVEVVVAPVTIPDTTVSVELFLLDTAGSDLYKEQISQYWNGVYYAILV 103 (208)
T ss_dssp -------------------------------------CEEEECTTSSEEEEEEEEETTTTHHHHHHHSTTCCCCCEEEEE
T ss_pred CHHHHHHHHHhCCC--------cccCCCCCccceEEEEEEEEECCcccEEEEEEEECCCcHHHHHHHHHHHhhCcEEEEE
Confidence 47888888875411 234566788885443 34443 57899999999999999999999999999999
Q ss_pred EeCCCcccHHHHHHHHHHHHhCCC--CCCCcEEEEEeCCCCCC---CCCHHHHHhHcCccccCCcceEEEEeeecC-CCC
Q 029517 87 IDAACPSRFEDSKTALEKVLRNED--LQGAPLLILANKQDLPD---AVSADELARYLDLKKLDERVCMFEAVSGYD-GFG 160 (192)
Q Consensus 87 ~D~~~~~s~~~~~~~~~~i~~~~~--~~~~piiiv~nK~Dl~~---~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~-~~g 160 (192)
+|++++.+++.+..|+..+..... ..++|+++|+||+|+.. .+..+++.+++. ..+++++++||++ |.|
T Consensus 104 ~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~~v~~~~~~~~~~-----~~~~~~~~~Sa~~~~~g 178 (208)
T 2yc2_C 104 FDVSSMESFESCKAWFELLKSARPDRERPLRAVLVANKTDLPPQRHQVRLDMAQDWAT-----TNTLDFFDVSANPPGKD 178 (208)
T ss_dssp EETTCHHHHHHHHHHHHHHHHHCSCTTSCCEEEEEEECC-------CCCHHHHHHHHH-----HTTCEEEECCC------
T ss_pred EECCCHHHHHHHHHHHHHHHHhhcccccCCcEEEEEECcccchhhccCCHHHHHHHHH-----HcCCEEEEeccCCCCcC
Confidence 999999999999999999887643 24789999999999975 566677777776 4568999999999 999
Q ss_pred HHHHHHHHHHHHHhcch
Q 029517 161 IKESVEWLVEVMERSKR 177 (192)
Q Consensus 161 i~e~~~~i~~~i~~~~~ 177 (192)
|+++|++|.+.+.+...
T Consensus 179 i~~l~~~i~~~~~~~~~ 195 (208)
T 2yc2_C 179 ADAPFLSIATTFYRNYE 195 (208)
T ss_dssp -CHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 99999999998876543
No 47
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=99.91 E-value=7.3e-24 Score=156.09 Aligned_cols=147 Identities=23% Similarity=0.314 Sum_probs=119.0
Q ss_pred ccccHHHHHHHHhhhhccCCCCCCCCCCCCcceEEEE--EE--ecCEEEEEEeCCCCcccHHHHHHhhhcCCEEEEEEeC
Q 029517 14 TKTEFHTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGR--IE--VSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDA 89 (192)
Q Consensus 14 kst~~~~l~~~~~~~~~~~~~~~~~~~~~T~g~~~~~--~~--~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ii~v~D~ 89 (192)
|||++|+|+ . +.+...+.||+|.++.. +. ...+.+.+|||||++++...+..+++++|++|+|+|+
T Consensus 21 KSsli~~l~----~------~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~ 90 (203)
T 1zbd_A 21 KTSFLFRYA----D------DSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGLERYRTITTAYYRGAMGFILMYDI 90 (203)
T ss_dssp HHHHHHHHH----T------CCCCSCCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTGGGCSEEEEEEET
T ss_pred HHHHHHHHh----c------CCCCCCcCCccceeEEEEEEEECCeEEEEEEEECCCchhhcchHHHhhcCCCEEEEEEEC
Confidence 566666554 3 44556678888877653 32 2357899999999999999999999999999999999
Q ss_pred CCcccHHHHHHHHHHHHhCCCCCCCcEEEEEeCCCCCC--CCCHHHHHhHcCccccCCcceEEEEeeecCCCCHHHHHHH
Q 029517 90 ACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPD--AVSADELARYLDLKKLDERVCMFEAVSGYDGFGIKESVEW 167 (192)
Q Consensus 90 ~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~e~~~~ 167 (192)
+++.+++.+..|+..+.... ..+.|+++|+||+|+.+ .+..+++.+++. ..+++++++||++|.||+++|++
T Consensus 91 ~~~~s~~~~~~~~~~i~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~gi~~l~~~ 164 (203)
T 1zbd_A 91 TNEESFNAVQDWSTQIKTYS-WDNAQVLLVGNKCDMEDERVVSSERGRQLAD-----HLGFEFFEASAKDNINVKQTFER 164 (203)
T ss_dssp TCHHHHHHHHHHHHHHHHHS-CSSCEEEEEEECTTCTTSCCSCHHHHHHHHH-----HHTCEEEECBTTTTBSSHHHHHH
T ss_pred cCHHHHHHHHHHHHHHHHhc-CCCCCEEEEEECcccCcccccCHHHHHHHHH-----HCCCeEEEEECCCCCCHHHHHHH
Confidence 99999999999998887653 24789999999999976 455666766665 44679999999999999999999
Q ss_pred HHHHHHhcc
Q 029517 168 LVEVMERSK 176 (192)
Q Consensus 168 i~~~i~~~~ 176 (192)
|.+.+.+..
T Consensus 165 l~~~i~~~~ 173 (203)
T 1zbd_A 165 LVDVICEKM 173 (203)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999876543
No 48
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}
Probab=99.91 E-value=4.9e-24 Score=168.59 Aligned_cols=136 Identities=32% Similarity=0.698 Sum_probs=115.3
Q ss_pred CCCCcceEEEEEEecCEEEEEEeCCCCcccHHHHHHhhhcCCEEEEEEeCCCcccHHHHHHHHHHHHhCCCCCCCcEEEE
Q 029517 40 IVPTVGLNIGRIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLIL 119 (192)
Q Consensus 40 ~~~T~g~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ii~v~D~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv 119 (192)
..||++..+..+....+.+.||||||++.+...+..+++.+|++|+|||+++..+++.+..|+..+.......++|+++|
T Consensus 193 ~~pT~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~vilV~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilV 272 (329)
T 3o47_A 193 TIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVF 272 (329)
T ss_dssp EEEETTEEEEEEEETTEEEEEEECC-----CCSHHHHHTTEEEEEEEEETTCSSSHHHHHHHHHHHHTCGGGTTCEEEEE
T ss_pred cccccceEEEEEecCcEEEEEEECCCCHhHHHHHHHHhccCCEEEEEEECCchHHHHHHHHHHHHHHhhhccCCCeEEEE
Confidence 35899999999999999999999999999999999999999999999999999999999999988877654468999999
Q ss_pred EeCCCCCCCCCHHHHHhHcCccccCCcceEEEEeeecCCCCHHHHHHHHHHHHHhc
Q 029517 120 ANKQDLPDAVSADELARYLDLKKLDERVCMFEAVSGYDGFGIKESVEWLVEVMERS 175 (192)
Q Consensus 120 ~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~e~~~~i~~~i~~~ 175 (192)
+||+|+.+....+++...+........+++++++||++|.||+++|++|.+.+.+.
T Consensus 273 ~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~vSAk~g~gi~el~~~l~~~l~~~ 328 (329)
T 3o47_A 273 ANKQDLPNAMNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLSNQLRNQ 328 (329)
T ss_dssp EECTTSTTCCCHHHHHHHHTCTTCCSSCEEEEECBTTTTBTHHHHHHHHHHHHTC-
T ss_pred EECccCCcccCHHHHHHHhchhhhhcCCCEEEEEECCCCcCHHHHHHHHHHHHHhc
Confidence 99999998777788877777555556788999999999999999999999987643
No 49
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=99.91 E-value=4.3e-24 Score=157.76 Aligned_cols=151 Identities=22% Similarity=0.354 Sum_probs=121.6
Q ss_pred ccccHHHHHHHHhhhhccCCCCCCCCCCCCcceEEEE--EEe--cCEEEEEEeCCCCcccHHHHHHhhhcCCEEEEEEeC
Q 029517 14 TKTEFHTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGR--IEV--SNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDA 89 (192)
Q Consensus 14 kst~~~~l~~~~~~~~~~~~~~~~~~~~~T~g~~~~~--~~~--~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ii~v~D~ 89 (192)
|||++|+|++ +.+...+.||++.++.. +.. ..+.+.+|||||++++...+..+++.+|++|+|+|+
T Consensus 21 KSsli~~l~~----------~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~vilv~d~ 90 (206)
T 2bcg_Y 21 KSCLLLRFSD----------DTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQERFRTITSSYYRGSHGIIIVYDV 90 (206)
T ss_dssp HHHHHHHHHH----------CCCCTTCCCSSCCCEEEEEEEETTEEEEEEEECCTTTTTTTCCCGGGGTTCSEEEEEEET
T ss_pred HHHHHHHHhc----------CCCCCCCCCcccceeEEEEEEECCEEEEEEEEeCCChHHHHHHHHHhccCCCEEEEEEEC
Confidence 6666666644 34556678888877653 333 347899999999999988888999999999999999
Q ss_pred CCcccHHHHHHHHHHHHhCCCCCCCcEEEEEeCCCCCC--CCCHHHHHhHcCccccCCcceEEEEeeecCCCCHHHHHHH
Q 029517 90 ACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPD--AVSADELARYLDLKKLDERVCMFEAVSGYDGFGIKESVEW 167 (192)
Q Consensus 90 ~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~e~~~~ 167 (192)
+++.+++.+..|+..+..... .+.|+++|+||+|+.+ .+..+++.+++. ..+++++++||++|.||+++|++
T Consensus 91 ~~~~s~~~~~~~~~~i~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~g~gi~~l~~~ 164 (206)
T 2bcg_Y 91 TDQESFNGVKMWLQEIDRYAT-STVLKLLVGNKCDLKDKRVVEYDVAKEFAD-----ANKMPFLETSALDSTNVEDAFLT 164 (206)
T ss_dssp TCHHHHHHHHHHHHHHHHHSC-TTCEEEEEEECTTCTTTCCSCHHHHHHHHH-----HTTCCEEECCTTTCTTHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHHHhcC-CCCCEEEEEECCCCccccccCHHHHHHHHH-----HcCCeEEEEeCCCCCCHHHHHHH
Confidence 999999999999988876542 4789999999999976 456667776665 44678999999999999999999
Q ss_pred HHHHHHhcchhhh
Q 029517 168 LVEVMERSKRTEM 180 (192)
Q Consensus 168 i~~~i~~~~~~~~ 180 (192)
|.+.+.+....+.
T Consensus 165 l~~~i~~~~~~~~ 177 (206)
T 2bcg_Y 165 MARQIKESMSQQN 177 (206)
T ss_dssp HHHHHHHHCCHHH
T ss_pred HHHHHHHHHhhcc
Confidence 9998887654443
No 50
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=99.91 E-value=2.6e-24 Score=160.14 Aligned_cols=149 Identities=19% Similarity=0.353 Sum_probs=119.9
Q ss_pred ccccHHHHHHHHhhhhccCCCCCCCCCCCCcceEEEE--EEe--c----------CEEEEEEeCCCCcccHHHHHHhhhc
Q 029517 14 TKTEFHTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGR--IEV--S----------NSKLVFWDLGGQPGLRSIWEKYYEE 79 (192)
Q Consensus 14 kst~~~~l~~~~~~~~~~~~~~~~~~~~~T~g~~~~~--~~~--~----------~~~~~i~D~~G~~~~~~~~~~~~~~ 79 (192)
|||++|+|+ . +.+...+.||++.++.. +.. . .+.+.+|||||++++...+..+++.
T Consensus 38 KSsLi~~l~----~------~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~ 107 (217)
T 2f7s_A 38 KTTFLYRYT----D------NKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKAFKVHLQLWDTAGQERFRSLTTAFFRD 107 (217)
T ss_dssp HHHHHHHHH----C------SCCCCEEEEEEEEEEEEEEEEEEC-------CCEEEEEEEEEEEESHHHHHHHHHHHHTT
T ss_pred HHHHHHHHh----c------CCCCcCCCCceeEEEEEEEEEECCccccccccCceeEEEEEEECCCcHhHHhHHHHHhcC
Confidence 566665554 3 44556778898877653 222 2 5789999999999999999999999
Q ss_pred CCEEEEEEeCCCcccHHHHHHHHHHHHhCCCCCCCcEEEEEeCCCCCC--CCCHHHHHhHcCccccCCcceEEEEeeecC
Q 029517 80 AHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPD--AVSADELARYLDLKKLDERVCMFEAVSGYD 157 (192)
Q Consensus 80 ~d~ii~v~D~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 157 (192)
+|++|+|+|++++.+++.+..|+..+.......++|+++|+||+|+.. .+..+++.+++. ..+++++++||++
T Consensus 108 ~d~iilV~D~~~~~s~~~~~~~l~~i~~~~~~~~~piilV~NK~Dl~~~~~v~~~~~~~~~~-----~~~~~~~~~Sa~~ 182 (217)
T 2f7s_A 108 AMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPDIVLIGNKADLPDQREVNERQARELAD-----KYGIPYFETSAAT 182 (217)
T ss_dssp CCEEEEEEETTCHHHHHHHHHHHHTCCCCCTTTCCEEEEEEECTTCGGGCCSCHHHHHHHHH-----HTTCCEEEEBTTT
T ss_pred CCEEEEEEECcCHHHHHHHHHHHHHHHHhcCcCCCCEEEEEECCccccccccCHHHHHHHHH-----HCCCcEEEEECCC
Confidence 999999999999999999999988877654435799999999999975 455677777765 4467899999999
Q ss_pred CCCHHHHHHHHHHHHHhcch
Q 029517 158 GFGIKESVEWLVEVMERSKR 177 (192)
Q Consensus 158 ~~gi~e~~~~i~~~i~~~~~ 177 (192)
|.||+++|++|.+.+.+...
T Consensus 183 g~gi~~l~~~l~~~i~~~~~ 202 (217)
T 2f7s_A 183 GQNVEKAVETLLDLIMKRME 202 (217)
T ss_dssp TBTHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHhh
Confidence 99999999999998876543
No 51
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=99.91 E-value=1.9e-24 Score=158.01 Aligned_cols=147 Identities=21% Similarity=0.312 Sum_probs=115.1
Q ss_pred ccccHHHHHHHHhhhhccCCCCCCCCCCCCcceEEE--EEEe--cCEEEEEEeCCCCcccHHHHHHhhhcCCEEEEEEeC
Q 029517 14 TKTEFHTLLEKLKSVYSNVEGLPPDRIVPTVGLNIG--RIEV--SNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDA 89 (192)
Q Consensus 14 kst~~~~l~~~~~~~~~~~~~~~~~~~~~T~g~~~~--~~~~--~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ii~v~D~ 89 (192)
|||++|+|++ +.+...+.||+|.++. .+.. ..+.+.+|||||++++...+..+++++|++|+|+|+
T Consensus 34 KSsli~~l~~----------~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~ 103 (191)
T 2a5j_A 34 KSCLLLQFTD----------KRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDI 103 (191)
T ss_dssp HHHHHHHHHH----------SCCCC-----CCSSEEEEEEEETTEEEEEEEECCTTGGGTSCCCHHHHTTCSEEEEEEET
T ss_pred HHHHHHHHhc----------CCCCCCCCCcccceeEEEEEEECCEEEEEEEEECCCchhhhhhHHHHhccCCEEEEEEEC
Confidence 6777666654 3444556777776554 3333 347899999999999988889999999999999999
Q ss_pred CCcccHHHHHHHHHHHHhCCCCCCCcEEEEEeCCCCCC--CCCHHHHHhHcCccccCCcceEEEEeeecCCCCHHHHHHH
Q 029517 90 ACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPD--AVSADELARYLDLKKLDERVCMFEAVSGYDGFGIKESVEW 167 (192)
Q Consensus 90 ~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~e~~~~ 167 (192)
+++.+++.+..|+..+..... .+.|+++|+||+|+.+ .+..+++.+++. ..+++++++||++|.||+++|++
T Consensus 104 ~~~~s~~~~~~~l~~i~~~~~-~~~piilv~nK~Dl~~~~~v~~~~~~~~~~-----~~~~~~~~~Sa~~~~gi~~l~~~ 177 (191)
T 2a5j_A 104 TRRETFNHLTSWLEDARQHSS-SNMVIMLIGNKSDLESRRDVKREEGEAFAR-----EHGLIFMETSAKTACNVEEAFIN 177 (191)
T ss_dssp TCHHHHHTHHHHHHHHHHHSC-TTCEEEEEEECTTCGGGCCSCHHHHHHHHH-----HHTCEEEEECTTTCTTHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHhcC-CCCCEEEEEECcccCCccccCHHHHHHHHH-----HcCCEEEEEeCCCCCCHHHHHHH
Confidence 999999999999988876532 5799999999999965 556677777765 45679999999999999999999
Q ss_pred HHHHHHhcc
Q 029517 168 LVEVMERSK 176 (192)
Q Consensus 168 i~~~i~~~~ 176 (192)
|.+.+.+..
T Consensus 178 l~~~i~~~~ 186 (191)
T 2a5j_A 178 TAKEIYRKI 186 (191)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999887654
No 52
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=99.91 E-value=6.2e-24 Score=154.86 Aligned_cols=148 Identities=18% Similarity=0.262 Sum_probs=108.9
Q ss_pred ccccHHHHHHHHhhhhccCCCCCCCCCCCCcceEEEE-EEe--cCEEEEEEeCCCCcccHHHHHHhhhcCCEEEEEEeCC
Q 029517 14 TKTEFHTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGR-IEV--SNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAA 90 (192)
Q Consensus 14 kst~~~~l~~~~~~~~~~~~~~~~~~~~~T~g~~~~~-~~~--~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ii~v~D~~ 90 (192)
|||++|+|++. .+...+.+|.+..+.. +.. ..+.+.+|||||++++...+..+++.+|++++|+|++
T Consensus 34 KSsli~~l~~~----------~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~ 103 (190)
T 3con_A 34 KSALTIQLIQN----------HFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAIN 103 (190)
T ss_dssp HHHHHHHHHHS----------SCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCC-----------CTTCSEEEEEEETT
T ss_pred HHHHHHHHHcC----------CCccccCCccceEEEEEEEECCEEEEEEEEECCChHHHHHHHHHhhCcCCEEEEEEECc
Confidence 77777777643 3344567777766542 332 3477999999999999999999999999999999999
Q ss_pred CcccHHHHHHHHHHHHhCCCCCCCcEEEEEeCCCCCC-CCCHHHHHhHcCccccCCcceEEEEeeecCCCCHHHHHHHHH
Q 029517 91 CPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPD-AVSADELARYLDLKKLDERVCMFEAVSGYDGFGIKESVEWLV 169 (192)
Q Consensus 91 ~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~e~~~~i~ 169 (192)
+..+++.+..|+..+.......+.|+++|+||+|+.. ....+++.++++ ..+++++++||++|.|++++|++|.
T Consensus 104 ~~~s~~~~~~~~~~i~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~gi~~l~~~l~ 178 (190)
T 3con_A 104 NSKSFADINLYREQIKRVKDSDDVPMVLVGNKCDLPTRTVDTKQAHELAK-----SYGIPFIETSAKTRQGVEDAFYTLV 178 (190)
T ss_dssp CHHHHHHHHHHHHHHHHHHTCSCCCEEEEEECTTCSCCCSCHHHHHHHHH-----HHTCCEEECCTTTCTTHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHhCCCCCeEEEEEECCcCCcccCCHHHHHHHHH-----HcCCeEEEEeCCCCCCHHHHHHHHH
Confidence 9999999999988887654335799999999999976 456677777765 4467899999999999999999999
Q ss_pred HHHHhcc
Q 029517 170 EVMERSK 176 (192)
Q Consensus 170 ~~i~~~~ 176 (192)
+.+.+.+
T Consensus 179 ~~~~~~~ 185 (190)
T 3con_A 179 REIRQYR 185 (190)
T ss_dssp HHHHHHC
T ss_pred HHHHHHH
Confidence 9887654
No 53
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=99.91 E-value=3.6e-24 Score=154.44 Aligned_cols=150 Identities=21% Similarity=0.397 Sum_probs=119.2
Q ss_pred ccccHHHHHHHHhhhhccCCCCCCCCCCCCcceEEE--EEEecC--EEEEEEeCCCCcccHHHHHHhhhcCCEEEEEEeC
Q 029517 14 TKTEFHTLLEKLKSVYSNVEGLPPDRIVPTVGLNIG--RIEVSN--SKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDA 89 (192)
Q Consensus 14 kst~~~~l~~~~~~~~~~~~~~~~~~~~~T~g~~~~--~~~~~~--~~~~i~D~~G~~~~~~~~~~~~~~~d~ii~v~D~ 89 (192)
|||++|+|+ + +.+...+.||++.++. .+...+ +.+.+|||||++.+...+..+++.+|++++|+|+
T Consensus 22 Kssl~~~l~----~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~ 91 (181)
T 3tw8_B 22 KSSLLLRFA----D------NTFSGSYITTIGVDFKIRTVEINGEKVKLQIWDTAGQERFRTITSTYYRGTHGVIVVYDV 91 (181)
T ss_dssp HHHHHHHHC----S------CC---CCTTTBSEEEEEEEEEETTEEEEEEEEEETTGGGCSSCCGGGGTTCSEEEEEEET
T ss_pred HHHHHHHHh----c------CCCCCccCCCceeEEEEEEEEECCEEEEEEEEcCCCchhhhhhHHHHhccCCEEEEEEEC
Confidence 566665554 3 4445667888887665 344444 7899999999999988888999999999999999
Q ss_pred CCcccHHHHHHHHHHHHhCCCCCCCcEEEEEeCCCCCC--CCCHHHHHhHcCccccCCcceEEEEeeecCCCCHHHHHHH
Q 029517 90 ACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPD--AVSADELARYLDLKKLDERVCMFEAVSGYDGFGIKESVEW 167 (192)
Q Consensus 90 ~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~e~~~~ 167 (192)
+++.+++.+..|+..+.... .+.|+++|+||+|+.+ ....++..+++. ..+++++++||++|.|++++|++
T Consensus 92 ~~~~s~~~~~~~~~~~~~~~--~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~gi~~l~~~ 164 (181)
T 3tw8_B 92 TSAESFVNVKRWLHEINQNC--DDVCRILVGNKNDDPERKVVETEDAYKFAG-----QMGIQLFETSAKENVNVEEMFNC 164 (181)
T ss_dssp TCHHHHHHHHHHHHHHHHHC--TTSEEEEEEECTTCGGGCCSCHHHHHHHHH-----HHTCCEEECBTTTTBSHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHhC--CCCCEEEEEECCCCchhcccCHHHHHHHHH-----HcCCeEEEEECCCCCCHHHHHHH
Confidence 99999999999999987754 4799999999999875 455666666665 45678999999999999999999
Q ss_pred HHHHHHhcchhhh
Q 029517 168 LVEVMERSKRTEM 180 (192)
Q Consensus 168 i~~~i~~~~~~~~ 180 (192)
|.+.+.+.++.+.
T Consensus 165 l~~~~~~~~~~~~ 177 (181)
T 3tw8_B 165 ITELVLRAKKDNL 177 (181)
T ss_dssp HHHHHHHHHHHHC
T ss_pred HHHHHHHHhhhhh
Confidence 9998887665443
No 54
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=99.91 E-value=2.6e-24 Score=157.50 Aligned_cols=137 Identities=20% Similarity=0.274 Sum_probs=113.1
Q ss_pred CCCCCCCCCCcceEEEE---EEecCEEEEEEeCCCCcccHHHHHHhhhcCCEEEEEEeCCCcccHHHH-HHHHHHHHhCC
Q 029517 34 GLPPDRIVPTVGLNIGR---IEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDS-KTALEKVLRNE 109 (192)
Q Consensus 34 ~~~~~~~~~T~g~~~~~---~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ii~v~D~~~~~s~~~~-~~~~~~i~~~~ 109 (192)
+.+...+.||++..+.. +++..+.+.+|||||++++...+..+++++|++++|+|++++.+++.+ ..|+..+....
T Consensus 46 ~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~ 125 (194)
T 3reg_A 46 GEIPTAYVPTVFENFSHVMKYKNEEFILHLWDTAGQEEYDRLRPLSYADSDVVLLCFAVNNRTSFDNISTKWEPEIKHYI 125 (194)
T ss_dssp SCCCSSCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHC
T ss_pred CCCCCccCCeeeeeeEEEEEECCEEEEEEEEECCCcHHHHHHhHhhccCCcEEEEEEECCCHHHHHHHHHHHHHHHHHhC
Confidence 44667788999988764 223457889999999999999999999999999999999999999997 67777776553
Q ss_pred CCCCCcEEEEEeCCCCCC----CCCHHHHHhHcCccccCCcceE-EEEeeecCCCCHHHHHHHHHHHHHhcch
Q 029517 110 DLQGAPLLILANKQDLPD----AVSADELARYLDLKKLDERVCM-FEAVSGYDGFGIKESVEWLVEVMERSKR 177 (192)
Q Consensus 110 ~~~~~piiiv~nK~Dl~~----~~~~~~~~~~~~~~~~~~~~~~-~~~~Sa~~~~gi~e~~~~i~~~i~~~~~ 177 (192)
.+.|+++|+||+|+.+ .+..+++.+++. ..++. ++++||++|.||+++|++|.+.+.+.+.
T Consensus 126 --~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~~~~ 191 (194)
T 3reg_A 126 --DTAKTVLVGLKVDLRKDGSDDVTKQEGDDLCQ-----KLGCVAYIEASSVAKIGLNEVFEKSVDCIFSNKP 191 (194)
T ss_dssp --TTSEEEEEEECGGGCCTTTTCCCHHHHHHHHH-----HHTCSCEEECBTTTTBSHHHHHHHHHHHHHCSCC
T ss_pred --CCCCEEEEEEChhhccCCCCcccHHHHHHHHH-----hcCCCEEEEeecCCCCCHHHHHHHHHHHHHhcCC
Confidence 5799999999999864 466777777776 44555 9999999999999999999998876653
No 55
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=99.91 E-value=6.9e-24 Score=155.06 Aligned_cols=147 Identities=16% Similarity=0.275 Sum_probs=119.5
Q ss_pred ccccHHHHHHHHhhhhccCCCCCCCCCCCCcceEEEE--EE--ecCEEEEEEeCCCCcccHHHHHHhhhcCCEEEEEEeC
Q 029517 14 TKTEFHTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGR--IE--VSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDA 89 (192)
Q Consensus 14 kst~~~~l~~~~~~~~~~~~~~~~~~~~~T~g~~~~~--~~--~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ii~v~D~ 89 (192)
|||++|+|++ +.+...+.+|+|.++.. +. ...+.+.+|||||++++...+..+++++|++|+|+|+
T Consensus 38 KSsLi~~l~~----------~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~vi~v~D~ 107 (193)
T 2oil_A 38 KTNLLSRFTR----------NEFSHDSRTTIGVEFSTRTVMLGTAAVKAQIWDTAGLERYRAITSAYYRGAVGALLVFDL 107 (193)
T ss_dssp HHHHHHHHHH----------SCCCSSCCCCSSEEEEEEEEEETTEEEEEEEEEESCCCTTCTTHHHHHTTCCEEEEEEET
T ss_pred HHHHHHHHhc----------CCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCCchhhhhhhHHHhccCCEEEEEEEC
Confidence 6666666654 33455678888877653 22 2467899999999999999999999999999999999
Q ss_pred CCcccHHHHHHHHHHHHhCCCCCCCcEEEEEeCCCCCC--CCCHHHHHhHcCccccCCcceEEEEeeecCCCCHHHHHHH
Q 029517 90 ACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPD--AVSADELARYLDLKKLDERVCMFEAVSGYDGFGIKESVEW 167 (192)
Q Consensus 90 ~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~e~~~~ 167 (192)
+++.+++.+..|+..+..... .+.|+++|+||+|+.. .+..+++.+++. ..+++++++||++|.||+++|++
T Consensus 108 ~~~~s~~~~~~~l~~i~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~gi~~l~~~ 181 (193)
T 2oil_A 108 TKHQTYAVVERWLKELYDHAE-ATIVVMLVGNKSDLSQAREVPTEEARMFAE-----NNGLLFLETSALDSTNVELAFET 181 (193)
T ss_dssp TCHHHHHTHHHHHHHHHTTSC-TTCEEEEEEECGGGGGGCCSCHHHHHHHHH-----HTTCEEEEECTTTCTTHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHhcC-CCCeEEEEEECCCcccccccCHHHHHHHHH-----HcCCEEEEEeCCCCCCHHHHHHH
Confidence 999999999999988876532 5789999999999965 456677777765 45679999999999999999999
Q ss_pred HHHHHHhcc
Q 029517 168 LVEVMERSK 176 (192)
Q Consensus 168 i~~~i~~~~ 176 (192)
|.+.+.+..
T Consensus 182 l~~~i~~~~ 190 (193)
T 2oil_A 182 VLKEIFAKV 190 (193)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 999887643
No 56
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=99.91 E-value=1.6e-23 Score=151.04 Aligned_cols=145 Identities=13% Similarity=0.204 Sum_probs=110.2
Q ss_pred ccccHHHHHHHHhhhhccCCCCCCCCCCCCcceEEEE-EE--ecCEEEEEEeCCCCcccHHHHHHhhhcCCEEEEEEeCC
Q 029517 14 TKTEFHTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGR-IE--VSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAA 90 (192)
Q Consensus 14 kst~~~~l~~~~~~~~~~~~~~~~~~~~~T~g~~~~~-~~--~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ii~v~D~~ 90 (192)
|||++|+|++ +.+.. +.||++..+.. +. +..+.+++|||||+++ ..+++++|++++|||++
T Consensus 20 KTsli~~l~~----------~~~~~-~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~-----~~~~~~~d~~ilv~D~~ 83 (178)
T 2iwr_A 20 KSSLIHRFLT----------GSYQV-LEKTESEQYKKEMLVDGQTHLVLIREEAGAPD-----AKFSGWADAVIFVFSLE 83 (178)
T ss_dssp HHHHHHHHHH----------SCCCC-CSSCSSSEEEEEEEETTEEEEEEEEECSSSCC-----HHHHHHCSEEEEEEETT
T ss_pred HHHHHHHHHh----------CCCCC-cCCCcceeEEEEEEECCEEEEEEEEECCCCch-----hHHHHhCCEEEEEEECc
Confidence 6777666654 23333 67888876543 33 3357899999999987 35788999999999999
Q ss_pred CcccHHHHHHHHHHHHhCC--CCCCCcEEEEEeCCCCC----CCCCHHHHHhHcCccccCCcceEEEEeeecCCCCHHHH
Q 029517 91 CPSRFEDSKTALEKVLRNE--DLQGAPLLILANKQDLP----DAVSADELARYLDLKKLDERVCMFEAVSGYDGFGIKES 164 (192)
Q Consensus 91 ~~~s~~~~~~~~~~i~~~~--~~~~~piiiv~nK~Dl~----~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~e~ 164 (192)
++.+++.+..|+..+.... ...++|+++|+||+|+. ..+..+++.+++. ...+++++++||++|.||+++
T Consensus 84 ~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~~~v~~~~~~~~~~----~~~~~~~~~~Sa~~~~~i~~l 159 (178)
T 2iwr_A 84 DENSFQAVSRLHGQLSSLRGEGRGGLALALVGTQDRISASSPRVVGDARARALXA----DMKRCSYYETXATYGLNVDRV 159 (178)
T ss_dssp CHHHHHHHHHHHHHHHHHHCSSSCCCEEEEEEECTTCBTTBCCCSCHHHHHHHHH----HHSSEEEEEEBTTTTBTHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccccCcCCHHHHHHHHH----hhcCCeEEEEeccccCCHHHH
Confidence 9999999999765554431 12478999999999993 2566777777665 123689999999999999999
Q ss_pred HHHHHHHHHhcchh
Q 029517 165 VEWLVEVMERSKRT 178 (192)
Q Consensus 165 ~~~i~~~i~~~~~~ 178 (192)
|++|.+.+.+..+.
T Consensus 160 f~~l~~~~~~~~~~ 173 (178)
T 2iwr_A 160 FQEVAQKVVTLRKQ 173 (178)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhh
Confidence 99999988776543
No 57
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=99.91 E-value=9.7e-25 Score=155.90 Aligned_cols=147 Identities=22% Similarity=0.342 Sum_probs=113.1
Q ss_pred ccccHHHHHHHHhhhhccCCCCCCCCCCCCcceEEEE--EEe--cCEEEEEEeCCCCcccHHHHHHhhhcCCEEEEEEeC
Q 029517 14 TKTEFHTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGR--IEV--SNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDA 89 (192)
Q Consensus 14 kst~~~~l~~~~~~~~~~~~~~~~~~~~~T~g~~~~~--~~~--~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ii~v~D~ 89 (192)
|||++|+|++ +.+...+.||++.++.. +.. ..+.+.+||+||++.+...+..+++++|++++|+|+
T Consensus 16 Kssli~~l~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~ 85 (170)
T 1g16_A 16 KSCLLVRFVE----------DKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQERFRTITTAYYRGAMGIILVYDI 85 (170)
T ss_dssp HHHHHHHHHH----------CCCCC-------CCEEEEEEESSSCEEEEEEECCTTGGGTSCCCHHHHTTEEEEEEEEET
T ss_pred HHHHHHHHHh----------CCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCCChhhhhhHHHHhccCCEEEEEEEC
Confidence 6777777764 33445677888866543 333 357899999999999888888999999999999999
Q ss_pred CCcccHHHHHHHHHHHHhCCCCCCCcEEEEEeCCCCCC-CCCHHHHHhHcCccccCCcceEEEEeeecCCCCHHHHHHHH
Q 029517 90 ACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPD-AVSADELARYLDLKKLDERVCMFEAVSGYDGFGIKESVEWL 168 (192)
Q Consensus 90 ~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~e~~~~i 168 (192)
+++.+++.+..|+..+..... .+.|+++|+||+|+.. ....+++.+++. ..+++++++||++|.|++++|++|
T Consensus 86 ~~~~s~~~~~~~~~~i~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~gv~~l~~~l 159 (170)
T 1g16_A 86 TDERTFTNIKQWFKTVNEHAN-DEAQLLLVGNKSDMETRVVTADQGEALAK-----ELGIPFIESSAKNDDNVNEIFFTL 159 (170)
T ss_dssp TCHHHHHTHHHHHHHHHHHSC-TTCEEEEEEECTTCTTCCSCHHHHHHHHH-----HHTCCEEECBTTTTBSHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHhcC-CCCcEEEEEECccCCcCccCHHHHHHHHH-----HcCCeEEEEECCCCCCHHHHHHHH
Confidence 999999999999988877542 4789999999999955 456666666665 446789999999999999999999
Q ss_pred HHHHHhcc
Q 029517 169 VEVMERSK 176 (192)
Q Consensus 169 ~~~i~~~~ 176 (192)
.+.+.+..
T Consensus 160 ~~~~~~~~ 167 (170)
T 1g16_A 160 AKLIQEKI 167 (170)
T ss_dssp HHHHHHTC
T ss_pred HHHHHHHh
Confidence 99887643
No 58
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=99.91 E-value=1.6e-23 Score=150.76 Aligned_cols=148 Identities=18% Similarity=0.309 Sum_probs=115.9
Q ss_pred ccccHHHHHHHHhhhhccCCCCCCCCCCCCcceEEEE--EEec--CEEEEEEeCCCCcccHHHHHHhhhcCCEEEEEEeC
Q 029517 14 TKTEFHTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGR--IEVS--NSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDA 89 (192)
Q Consensus 14 kst~~~~l~~~~~~~~~~~~~~~~~~~~~T~g~~~~~--~~~~--~~~~~i~D~~G~~~~~~~~~~~~~~~d~ii~v~D~ 89 (192)
|||++|+|++ +.+...+.||+|.++.. +... .+.+.+|||||++.+...+..+++.+|++++|+|+
T Consensus 20 KSsli~~l~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~ 89 (177)
T 1wms_A 20 KSSLMNRYVT----------NKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQERFRSLRTPFYRGSDCCLLTFSV 89 (177)
T ss_dssp HHHHHHHHHH----------SCCCC----CCSEEEEEEEEEETTEEEEEEEEECCCCGGGHHHHGGGGTTCSEEEEEEET
T ss_pred HHHHHHHHHc----------CCCCCCCCCceeeeEEEEEEEECCEEEEEEEEeCCCchhhhhhHHHHHhcCCEEEEEEEC
Confidence 6777776653 34456778899887653 3333 47999999999999999999999999999999999
Q ss_pred CCcccHHHHHHHHHHHHhCCC---CCCCcEEEEEeCCCCCC-CCCHHHHHhHcCccccCCcceEEEEeeecCCCCHHHHH
Q 029517 90 ACPSRFEDSKTALEKVLRNED---LQGAPLLILANKQDLPD-AVSADELARYLDLKKLDERVCMFEAVSGYDGFGIKESV 165 (192)
Q Consensus 90 ~~~~s~~~~~~~~~~i~~~~~---~~~~piiiv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~e~~ 165 (192)
+++.+++.+..|+..+..... ..+.|+++|+||+|+.. ....+++.+++. ...+.+++++||++|.|++++|
T Consensus 90 ~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~----~~~~~~~~~~Sa~~~~gi~~l~ 165 (177)
T 1wms_A 90 DDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKIDISERQVSTEEAQAWCR----DNGDYPYFETSAKDATNVAAAF 165 (177)
T ss_dssp TCHHHHHTHHHHHHHHHHHHTCSCTTTSCEEEEEECTTCSSCSSCHHHHHHHHH----HTTCCCEEECCTTTCTTHHHHH
T ss_pred cCHHHHHHHHHHHHHHHHHccccccCCCcEEEEEECCcccccccCHHHHHHHHH----hcCCceEEEEeCCCCCCHHHHH
Confidence 999999999989888875422 25789999999999964 566777777764 1346789999999999999999
Q ss_pred HHHHHHHHhc
Q 029517 166 EWLVEVMERS 175 (192)
Q Consensus 166 ~~i~~~i~~~ 175 (192)
++|.+.+.+.
T Consensus 166 ~~l~~~~~~~ 175 (177)
T 1wms_A 166 EEAVRRVLAT 175 (177)
T ss_dssp HHHHHHHHTC
T ss_pred HHHHHHHHhh
Confidence 9999988654
No 59
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.91 E-value=3e-24 Score=157.41 Aligned_cols=148 Identities=18% Similarity=0.280 Sum_probs=116.9
Q ss_pred ccccHHHHHHHHhhhhccCCCCCCCCCCCCcceEEEEE---EecCEEEEEEeCCCCcccHHHHHHhhhcCCEEEEEEeCC
Q 029517 14 TKTEFHTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRI---EVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAA 90 (192)
Q Consensus 14 kst~~~~l~~~~~~~~~~~~~~~~~~~~~T~g~~~~~~---~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ii~v~D~~ 90 (192)
|||++|+|++ +.+...+.||++..+... +...+.+.+|||||++++...+..+++.+|++++|+|++
T Consensus 21 KSsli~~l~~----------~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~ 90 (199)
T 2gf0_A 21 KSSLVLRFVK----------GTFRDTYIPTIEDTYRQVISCDKSVCTLQITDTTGSHQFPAMQRLSISKGHAFILVFSVT 90 (199)
T ss_dssp HHHHHHHHHH----------SCCCCTTSCCCCEEEEEEEEETTEEEEEEEEECCGGGSCHHHHHHHHHHCSEEEEEEETT
T ss_pred HHHHHHHHHc----------CCCCCcccCccccceeEEEEECCEEEEEEEEeCCChHHhHHHHHHhhccCCEEEEEEECc
Confidence 6777777654 344566778888766542 233568999999999999999999999999999999999
Q ss_pred CcccHHHHHHHHHHHHhCCC-CCCCcEEEEEeCCCCCC-CCCHHHHHhHcCccccCCcceEEEEeeecCCCCHHHHHHHH
Q 029517 91 CPSRFEDSKTALEKVLRNED-LQGAPLLILANKQDLPD-AVSADELARYLDLKKLDERVCMFEAVSGYDGFGIKESVEWL 168 (192)
Q Consensus 91 ~~~s~~~~~~~~~~i~~~~~-~~~~piiiv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~e~~~~i 168 (192)
++.+++.+..|+..+..... ..+.|+++|+||+|+.. .+..+++.+++. ..+++++++||++|.||+++|++|
T Consensus 91 ~~~s~~~~~~~~~~i~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~gi~~l~~~l 165 (199)
T 2gf0_A 91 SKQSLEELGPIYKLIVQIKGSVEDIPVMLVGNKCDETQREVDTREAQAVAQ-----EWKCAFMETSAKMNYNVKELFQEL 165 (199)
T ss_dssp CHHHHHTTHHHHHHHHHHHSCGGGSCEEEEEECTTCSSCSSCHHHHHHHHH-----HHTCEEEECBTTTTBSHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccCCccccCHHHHHHHHH-----HhCCeEEEEecCCCCCHHHHHHHH
Confidence 99999988888777665321 24689999999999976 455666666654 446789999999999999999999
Q ss_pred HHHHHhcc
Q 029517 169 VEVMERSK 176 (192)
Q Consensus 169 ~~~i~~~~ 176 (192)
.+.+....
T Consensus 166 ~~~~~~~~ 173 (199)
T 2gf0_A 166 LTLETRRN 173 (199)
T ss_dssp HHHCSSSC
T ss_pred HHHHhhhh
Confidence 99776543
No 60
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=99.91 E-value=1.1e-23 Score=154.27 Aligned_cols=146 Identities=21% Similarity=0.345 Sum_probs=112.5
Q ss_pred ccccHHHHHHHHhhhhccCCCCCCCCCCCCcceEEEE--EEe--cCEEEEEEeCCCCcccHHHHHHhhhcCCEEEEEEeC
Q 029517 14 TKTEFHTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGR--IEV--SNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDA 89 (192)
Q Consensus 14 kst~~~~l~~~~~~~~~~~~~~~~~~~~~T~g~~~~~--~~~--~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ii~v~D~ 89 (192)
|||++|+|++ +.+...+.||+|.++.. +.. ..+.+.+|||||++++...+..+++++|++|+|+|+
T Consensus 39 KSsLi~~l~~----------~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~iilV~D~ 108 (192)
T 2il1_A 39 KTSLMERFTD----------DTFCEACKSTVGVDFKIKTVELRGKKIRLQIWDTAGQERFNSITSAYYRSAKGIILVYDI 108 (192)
T ss_dssp HHHHHHHHCC------------------CCTTEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHHHHHHCSEEEEEEET
T ss_pred HHHHHHHHhc----------CCCCcCCCCccceeEEEEEEEECCeEEEEEEEeCCCcHHHHHHHHHHhcCCCEEEEEEEC
Confidence 6666666643 33445567888876553 333 347899999999999999999999999999999999
Q ss_pred CCcccHHHHHHHHHHHHhCCCCCCCcEEEEEeCCCCCC--CCCHHHHHhHcCccccCCcceEEEEeeecCCCCHHHHHHH
Q 029517 90 ACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPD--AVSADELARYLDLKKLDERVCMFEAVSGYDGFGIKESVEW 167 (192)
Q Consensus 90 ~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~e~~~~ 167 (192)
+++.+++.+..|+..+..... .++|+++|+||+|+.. .+..+++.+++. ...+.+++++||++|.||+++|++
T Consensus 109 ~~~~s~~~~~~~~~~i~~~~~-~~~piilV~NK~Dl~~~~~v~~~~~~~~~~----~~~~~~~~~~SA~~g~gi~~l~~~ 183 (192)
T 2il1_A 109 TKKETFDDLPKWMKMIDKYAS-EDAELLLVGNKLDCETDREITRQQGEKFAQ----QITGMRFCEASAKDNFNVDEIFLK 183 (192)
T ss_dssp TCHHHHHTHHHHHHHHHHHSC-TTCEEEEEEECGGGGGGCCSCHHHHHHHHH----TSTTCEEEECBTTTTBSHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHHHhcC-CCCcEEEEEECcccccccccCHHHHHHHHH----hcCCCeEEEEeCCCCCCHHHHHHH
Confidence 999999999999887766532 4799999999999965 456667766665 123689999999999999999999
Q ss_pred HHHHHHh
Q 029517 168 LVEVMER 174 (192)
Q Consensus 168 i~~~i~~ 174 (192)
|.+.+.+
T Consensus 184 l~~~i~~ 190 (192)
T 2il1_A 184 LVDDILK 190 (192)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9988764
No 61
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=99.91 E-value=2e-24 Score=155.45 Aligned_cols=144 Identities=21% Similarity=0.365 Sum_probs=116.0
Q ss_pred ccccHHHHHHHHhhhhccCCCCCCCCCCCCcceEEEE--EEe--cCEEEEEEeCCCCcccHHHHHHhhhcCCEEEEEEeC
Q 029517 14 TKTEFHTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGR--IEV--SNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDA 89 (192)
Q Consensus 14 kst~~~~l~~~~~~~~~~~~~~~~~~~~~T~g~~~~~--~~~--~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ii~v~D~ 89 (192)
|||++|+|+ . +.+...+.||++.++.. +.. ..+.+.+|||||++++...+..+++++|++++|+|+
T Consensus 27 Kssli~~l~----~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~ 96 (179)
T 2y8e_A 27 KTSLITRFM----Y------DSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDI 96 (179)
T ss_dssp HHHHHHHHH----H------SCCCSSCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGSHHHHHTCSEEEEEEET
T ss_pred HHHHHHHHH----c------CCCCCCCCCceeeEEEEEEEEECCeEEEEEEEECCCcHHHHHHHHHHhcCCCEEEEEEEC
Confidence 566666665 3 44556678888876653 333 347899999999999999999999999999999999
Q ss_pred CCcccHHHHHHHHHHHHhCCCCCCCcEEEEEeCCCCCC--CCCHHHHHhHcCccccCCcceEEEEeeecCCCCHHHHHHH
Q 029517 90 ACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPD--AVSADELARYLDLKKLDERVCMFEAVSGYDGFGIKESVEW 167 (192)
Q Consensus 90 ~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~e~~~~ 167 (192)
+++.+++.+..|+..+..... .+.|+++|+||+|+.+ .+..++..+++. ..+++++++||++|.|++++|++
T Consensus 97 ~~~~s~~~~~~~~~~i~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~~i~~l~~~ 170 (179)
T 2y8e_A 97 TNTNSFHQTSKWIDDVRTERG-SDVIIMLVGNKTDLSDKRQVSTEEGERKAK-----ELNVMFIETSAKAGYNVKQLFRR 170 (179)
T ss_dssp TCHHHHHTHHHHHHHHHHHHT-TSSEEEEEEECGGGGGGCCSCHHHHHHHHH-----HHTCEEEEEBTTTTBSHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHhcC-CCCcEEEEEECCcccccCcCCHHHHHHHHH-----HcCCeEEEEeCCCCCCHHHHHHH
Confidence 999999999999988876432 4789999999999864 455666666665 44679999999999999999999
Q ss_pred HHHHHH
Q 029517 168 LVEVME 173 (192)
Q Consensus 168 i~~~i~ 173 (192)
|.+.+.
T Consensus 171 l~~~~~ 176 (179)
T 2y8e_A 171 VAAALP 176 (179)
T ss_dssp HHHTCC
T ss_pred HHHHHh
Confidence 987654
No 62
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=99.91 E-value=1.7e-23 Score=153.12 Aligned_cols=145 Identities=20% Similarity=0.293 Sum_probs=119.0
Q ss_pred ccccHHHHHHHHhhhhccCCCCCCCCCCCCcceEEEE--EE--ecCEEEEEEeCCCCcccHHHHHHhhhcCCEEEEEEeC
Q 029517 14 TKTEFHTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGR--IE--VSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDA 89 (192)
Q Consensus 14 kst~~~~l~~~~~~~~~~~~~~~~~~~~~T~g~~~~~--~~--~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ii~v~D~ 89 (192)
|||++|+|++ +.+...+.||+|..+.. +. ...+.+.+|||||++++...+..+++.+|++++|+|+
T Consensus 36 KSsli~~l~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~iilV~d~ 105 (192)
T 2fg5_A 36 KSSIVCRFVQ----------DHFDHNISPTIGASFMTKTVPCGNELHKFLIWDTAGQERFHSLAPMYYRGSAAAVIVYDI 105 (192)
T ss_dssp HHHHHHHHHH----------CCCCTTCCCCSSEEEEEEEEECSSSEEEEEEEEECCSGGGGGGTHHHHTTCSEEEEEEET
T ss_pred HHHHHHHHhc----------CCCCCCcCCCcceeEEEEEEEeCCEEEEEEEEcCCCchhhHhhhHHhhccCCEEEEEEeC
Confidence 5666666653 44556778899887654 22 3467899999999999999999999999999999999
Q ss_pred CCcccHHHHHHHHHHHHhCCCCCCCcEEEEEeCCCCCC--CCCHHHHHhHcCccccCCcceEEEEeeecCCCCHHHHHHH
Q 029517 90 ACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPD--AVSADELARYLDLKKLDERVCMFEAVSGYDGFGIKESVEW 167 (192)
Q Consensus 90 ~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~e~~~~ 167 (192)
+++.+++.+..|+..+..... .++|+++|+||+|+.+ .+..+++.+++. ..+++++++||++|.||+++|++
T Consensus 106 ~~~~s~~~~~~~~~~i~~~~~-~~~piiiv~NK~Dl~~~~~v~~~~~~~~~~-----~~~~~~~~~Sa~~~~gi~~l~~~ 179 (192)
T 2fg5_A 106 TKQDSFYTLKKWVKELKEHGP-ENIVMAIAGNKCDLSDIREVPLKDAKEYAE-----SIGAIVVETSAKNAINIEELFQG 179 (192)
T ss_dssp TCTHHHHHHHHHHHHHHHHSC-TTCEEEEEEECGGGGGGCCSCHHHHHHHHH-----TTTCEEEECBTTTTBSHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHhCC-CCCcEEEEEECcccccccccCHHHHHHHHH-----HcCCEEEEEeCCCCcCHHHHHHH
Confidence 999999999999998877542 4789999999999974 566778887776 55689999999999999999999
Q ss_pred HHHHHHh
Q 029517 168 LVEVMER 174 (192)
Q Consensus 168 i~~~i~~ 174 (192)
|.+.+.+
T Consensus 180 l~~~i~~ 186 (192)
T 2fg5_A 180 ISRQIPP 186 (192)
T ss_dssp HHHTCC-
T ss_pred HHHHHHh
Confidence 9886644
No 63
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=99.91 E-value=6.1e-24 Score=156.31 Aligned_cols=135 Identities=22% Similarity=0.386 Sum_probs=101.1
Q ss_pred CCCCCCCCCCcceEEE--EEE--ecCEEEEEEeCCCCcccHHHHHHhhhcCCEEEEEEeCCCcccHHHHHHHHHHHHhCC
Q 029517 34 GLPPDRIVPTVGLNIG--RIE--VSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNE 109 (192)
Q Consensus 34 ~~~~~~~~~T~g~~~~--~~~--~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ii~v~D~~~~~s~~~~~~~~~~i~~~~ 109 (192)
+.+...+.||+|.++. .+. ...+.+.+|||||++++...+..+++.+|++|+|+|++++.+++.+..|+..+....
T Consensus 51 ~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~iilv~d~~~~~s~~~~~~~~~~i~~~~ 130 (199)
T 2p5s_A 51 NEFRENISATLGVDFQMKTLIVDGERTVLQLWDTAGQERFRSIAKSYFRKADGVLLLYDVTCEKSFLNIREWVDMIEDAA 130 (199)
T ss_dssp CCCC----------CEEEEEEETTEEEEEEEEECTTCTTCHHHHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHC
T ss_pred CCCCccCCCCccceeEEEEEEECCEEEEEEEEECCCCcchhhhHHHHHhhCCEEEEEEECCChHHHHHHHHHHHHHHHhc
Confidence 4455667788886654 233 345789999999999999999999999999999999999999999999988877653
Q ss_pred CCCCCcEEEEEeCCCCC--------CCCCHHHHHhHcCccccCCcceEEEEeeecCCCCHHHHHHHHHHHHHh
Q 029517 110 DLQGAPLLILANKQDLP--------DAVSADELARYLDLKKLDERVCMFEAVSGYDGFGIKESVEWLVEVMER 174 (192)
Q Consensus 110 ~~~~~piiiv~nK~Dl~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~e~~~~i~~~i~~ 174 (192)
. .++|+++|+||+|+. ..+..++..+++. ..+++++++||++|.||+++|++|.+.+.+
T Consensus 131 ~-~~~piilv~NK~Dl~~~~~~~~~~~v~~~~~~~~~~-----~~~~~~~~~SA~~g~gv~el~~~l~~~i~~ 197 (199)
T 2p5s_A 131 H-ETVPIMLVGNKADIRDTAATEGQKCVPGHFGEKLAM-----TYGALFCETSAKDGSNIVEAVLHLAREVKK 197 (199)
T ss_dssp ----CCEEEEEECGGGHHHHHHTTCCCCCHHHHHHHHH-----HHTCEEEECCTTTCTTHHHHHHHHHHHHTC
T ss_pred C-CCCCEEEEEECcccccccccccccccCHHHHHHHHH-----HcCCeEEEeeCCCCCCHHHHHHHHHHHHHh
Confidence 2 478999999999985 2455666666665 446799999999999999999999988753
No 64
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.91 E-value=8.4e-24 Score=155.14 Aligned_cols=136 Identities=21% Similarity=0.168 Sum_probs=112.1
Q ss_pred CCCCCCCCCCcceEEEE-EE--ecCEEEEEEeCCCCcccHHHHHHhhhcCCEEEEEEeCCCcccHHHHHHHHHHHHhCCC
Q 029517 34 GLPPDRIVPTVGLNIGR-IE--VSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNED 110 (192)
Q Consensus 34 ~~~~~~~~~T~g~~~~~-~~--~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ii~v~D~~~~~s~~~~~~~~~~i~~~~~ 110 (192)
+.+...+.||++..+.. +. ...+.+.+|||||++. ...+..+++.+|++++|+|++++++++.+..|+..+.....
T Consensus 51 ~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~-~~~~~~~~~~~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~ 129 (196)
T 2atv_A 51 KRFIWEYDPTLESTYRHQATIDDEVVSMEILDTAGQED-TIQREGHMRWGEGFVLVYDITDRGSFEEVLPLKNILDEIKK 129 (196)
T ss_dssp SCCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCCCCC-CHHHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHT
T ss_pred CCCCcccCCCCCceEEEEEEECCEEEEEEEEECCCCCc-ccchhhhhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhhC
Confidence 44566778888877653 33 3357899999999988 67788899999999999999999999999999888877543
Q ss_pred CCCCcEEEEEeCCCCCC--CCCHHHHHhHcCccccCCcceEEEEeeecCCC-CHHHHHHHHHHHHHhc
Q 029517 111 LQGAPLLILANKQDLPD--AVSADELARYLDLKKLDERVCMFEAVSGYDGF-GIKESVEWLVEVMERS 175 (192)
Q Consensus 111 ~~~~piiiv~nK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~-gi~e~~~~i~~~i~~~ 175 (192)
..++|+++|+||+|+.. .+..+++.+++. ..+++++++||++|. ||+++|++|.+.+.+.
T Consensus 130 ~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~-----~~~~~~~~~Sa~~g~~gi~~l~~~l~~~i~~~ 192 (196)
T 2atv_A 130 PKNVTLILVGNKADLDHSRQVSTEEGEKLAT-----ELACAFYECSACTGEGNITEIFYELCREVRRR 192 (196)
T ss_dssp TSCCCEEEEEECGGGGGGCCSCHHHHHHHHH-----HHTSEEEECCTTTCTTCHHHHHHHHHHHHHHH
T ss_pred CCCCcEEEEEECcccccccccCHHHHHHHHH-----HhCCeEEEECCCcCCcCHHHHHHHHHHHHHhh
Confidence 35899999999999965 566677777665 446799999999999 9999999999988654
No 65
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=99.91 E-value=3.7e-24 Score=153.02 Aligned_cols=145 Identities=21% Similarity=0.265 Sum_probs=111.3
Q ss_pred ccccHHHHHHHHhhhhccCCCCCCCCCCCCcceEEEE--EE--ecCEEEEEEeCCCCcccHHHHHHhhhcCCEEEEEEeC
Q 029517 14 TKTEFHTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGR--IE--VSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDA 89 (192)
Q Consensus 14 kst~~~~l~~~~~~~~~~~~~~~~~~~~~T~g~~~~~--~~--~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ii~v~D~ 89 (192)
|||++|+|++ +.+...+.||++.++.. +. +..+.+.+|||||++++...+..+++.+|++++|+|+
T Consensus 19 Kssli~~l~~----------~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~ 88 (170)
T 1z08_A 19 KTSLVLRYCE----------NKFNDKHITTLGASFLTKKLNIGGKRVNLAIWDTAGQERFHALGPIYYRDSNGAILVYDI 88 (170)
T ss_dssp HHHHHHHHHH----------CCCCSSCCCCCSCEEEEEEEESSSCEEEEEEEECCCC-------CCSSTTCSEEEEEEET
T ss_pred HHHHHHHHHc----------CCCCcCCCCccceEEEEEEEEECCEEEEEEEEECCCcHhhhhhHHHHhccCCEEEEEEEC
Confidence 6777766653 34456678888877653 33 3457899999999999999998899999999999999
Q ss_pred CCcccHHHHHHHHHHHHhCCCCCCCcEEEEEeCCCCCC--CCCHHHHHhHcCccccCCcceEEEEeeecCCCCHHHHHHH
Q 029517 90 ACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPD--AVSADELARYLDLKKLDERVCMFEAVSGYDGFGIKESVEW 167 (192)
Q Consensus 90 ~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~e~~~~ 167 (192)
+++.+++.+..|+..+..... .+.|+++|+||+|+.+ .+..+++.+++. ..+.+++++||++|.|++++|++
T Consensus 89 ~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~gi~~l~~~ 162 (170)
T 1z08_A 89 TDEDSFQKVKNWVKELRKMLG-NEICLCIVGNKIDLEKERHVSIQEAESYAE-----SVGAKHYHTSAKQNKGIEELFLD 162 (170)
T ss_dssp TCHHHHHHHHHHHHHHHHHHG-GGSEEEEEEECGGGGGGCCSCHHHHHHHHH-----HTTCEEEEEBTTTTBSHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHHHhcC-CCCeEEEEEECcccccccccCHHHHHHHHH-----HcCCeEEEecCCCCCCHHHHHHH
Confidence 999999999999888766422 4689999999999965 566677777775 45689999999999999999999
Q ss_pred HHHHHHh
Q 029517 168 LVEVMER 174 (192)
Q Consensus 168 i~~~i~~ 174 (192)
|.+.+.+
T Consensus 163 l~~~~~~ 169 (170)
T 1z08_A 163 LCKRMIE 169 (170)
T ss_dssp HHHHHHC
T ss_pred HHHHHhh
Confidence 9987753
No 66
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.91 E-value=7.6e-24 Score=151.10 Aligned_cols=143 Identities=19% Similarity=0.292 Sum_probs=115.5
Q ss_pred ccccHHHHHHHHhhhhccCCCCCCCCCCCCcceEEEE--EE--ecCEEEEEEeCCCCcccHHHHHHhhhcCCEEEEEEeC
Q 029517 14 TKTEFHTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGR--IE--VSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDA 89 (192)
Q Consensus 14 kst~~~~l~~~~~~~~~~~~~~~~~~~~~T~g~~~~~--~~--~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ii~v~D~ 89 (192)
|||++|+|++ +.+...+.||+|..+.. +. ...+.+.+|||||++.+...+..+++++|++++|+|+
T Consensus 16 Kssli~~l~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~i~v~d~ 85 (170)
T 1ek0_A 16 KSSIVLRFVS----------NDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQERFASLAPXYYRNAQAALVVYDV 85 (170)
T ss_dssp HHHHHHHHHH----------SCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTTCSEEEEEEET
T ss_pred HHHHHHHHhc----------CCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCChhhhhhhhhhhccCcEEEEEEec
Confidence 6777777654 34455678888876642 33 3457899999999999999999999999999999999
Q ss_pred CCcccHHHHHHHHHHHHhCCCCCCCcEEEEEeCCCCCC-----CCCHHHHHhHcCccccCCcceEEEEeeecCCCCHHHH
Q 029517 90 ACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPD-----AVSADELARYLDLKKLDERVCMFEAVSGYDGFGIKES 164 (192)
Q Consensus 90 ~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~e~ 164 (192)
+++.+++.+..|+..+..... .+.|+++|+||+|+.. .+..++..+++. ..+++++++||++|.|++++
T Consensus 86 ~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~-----~~~~~~~~~Sa~~~~gi~~l 159 (170)
T 1ek0_A 86 TKPQSFIKARHWVKELHEQAS-KDIIIALVGNKIDXLQEGGERKVAREEGEKLAE-----EKGLLFFETSAKTGENVNDV 159 (170)
T ss_dssp TCHHHHHHHHHHHHHHHHHSC-TTCEEEEEEECGGGGGSSCCCCSCHHHHHHHHH-----HHTCEEEECCTTTCTTHHHH
T ss_pred CChHHHHHHHHHHHHHHHhcC-CCCcEEEEEECCCccccccccCCCHHHHHHHHH-----HcCCEEEEEeCCCCCCHHHH
Confidence 999999999999988877542 5799999999999864 355566666654 44679999999999999999
Q ss_pred HHHHHHHH
Q 029517 165 VEWLVEVM 172 (192)
Q Consensus 165 ~~~i~~~i 172 (192)
|++|.+.+
T Consensus 160 ~~~l~~~i 167 (170)
T 1ek0_A 160 FLGIGEKI 167 (170)
T ss_dssp HHHHHTTS
T ss_pred HHHHHHHH
Confidence 99998755
No 67
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=99.91 E-value=1.4e-24 Score=160.08 Aligned_cols=149 Identities=22% Similarity=0.335 Sum_probs=111.7
Q ss_pred ccccHHHHHHHHhhhhccCCCCCCCCCCCCcceEEEE--EEec--CEEEEEEeCCCCcccHHHHHHhhhcCCEEEEEEeC
Q 029517 14 TKTEFHTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGR--IEVS--NSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDA 89 (192)
Q Consensus 14 kst~~~~l~~~~~~~~~~~~~~~~~~~~~T~g~~~~~--~~~~--~~~~~i~D~~G~~~~~~~~~~~~~~~d~ii~v~D~ 89 (192)
|||++|+|++ +.+...+.||++.++.. +... .+.+.+|||||++.+...+..+++.+|++|+|+|+
T Consensus 38 KSsLi~~l~~----------~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~ 107 (200)
T 2o52_A 38 KSCLLHQFIE----------NKFKQDSNHTIGVEFGSRVVNVGGKTVKLQIWDTAGQERFRSVTRSYYRGAAGALLVYDI 107 (200)
T ss_dssp HHHHHHHHHC----------------------CCEEEEEEEETTEEEEEEEECCTTHHHHSCCCHHHHTTCSEEEEEEET
T ss_pred HHHHHHHHHh----------CCCCccCCCcccceeEEEEEEECCeeeEEEEEcCCCcHhHHHHHHHHhccCCEEEEEEEC
Confidence 6666666653 23344567777765543 3333 47999999999998888888999999999999999
Q ss_pred CCcccHHHHHHHHHHHHhCCCCCCCcEEEEEeCCCCCC--CCCHHHHHhHcCccccCCcceEEEEeeecCCCCHHHHHHH
Q 029517 90 ACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPD--AVSADELARYLDLKKLDERVCMFEAVSGYDGFGIKESVEW 167 (192)
Q Consensus 90 ~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~e~~~~ 167 (192)
+++.+++.+..|+..+..... .+.|+++|+||+|+.. .+..+++.+++. ..+++++++||++|.||+++|++
T Consensus 108 ~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~v~~~~~~~~~~-----~~~~~~~~~SA~~g~gi~~l~~~ 181 (200)
T 2o52_A 108 TSRETYNSLAAWLTDARTLAS-PNIVVILCGNKKDLDPEREVTFLEASRFAQ-----ENELMFLETSALTGENVEEAFLK 181 (200)
T ss_dssp TCHHHHHTHHHHHHHHHHHTC-TTCEEEEEEECGGGGGGCCSCHHHHHHHHH-----HTTCEEEEECTTTCTTHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHHHhcC-CCCcEEEEEECCCcccccccCHHHHHHHHH-----HcCCEEEEEeCCCCCCHHHHHHH
Confidence 999999999999988876533 5799999999999964 456677777765 45689999999999999999999
Q ss_pred HHHHHHhcchh
Q 029517 168 LVEVMERSKRT 178 (192)
Q Consensus 168 i~~~i~~~~~~ 178 (192)
|.+.+.+..+.
T Consensus 182 l~~~i~~~~~~ 192 (200)
T 2o52_A 182 CARTILNKIDS 192 (200)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHHhc
Confidence 99988765433
No 68
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=99.91 E-value=4.3e-23 Score=151.34 Aligned_cols=112 Identities=25% Similarity=0.362 Sum_probs=99.0
Q ss_pred EEEEEEeCCCCcccHHHHHHhhhcCCEEEEEEeCCCcccHHHHHHHHHHHHhCCCCCCCcEEEEEeCCCCCC-CCCHHHH
Q 029517 56 SKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPD-AVSADEL 134 (192)
Q Consensus 56 ~~~~i~D~~G~~~~~~~~~~~~~~~d~ii~v~D~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~-~~~~~~~ 134 (192)
+.+.+|||||++.+...+..+++.+|++++|+|++++.+++.+..|+..+.... +.|+++|+||+|+.. ....+++
T Consensus 93 ~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~i~~~~---~~piilv~NK~D~~~~~~~~~~~ 169 (208)
T 3clv_A 93 IKFDIWDTAGQERYASIVPLYYRGATCAIVVFDISNSNTLDRAKTWVNQLKISS---NYIIILVANKIDKNKFQVDILEV 169 (208)
T ss_dssp EEEEEEECTTGGGCTTTHHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHS---CCEEEEEEECTTCC-CCSCHHHH
T ss_pred eEEEEEECCCcHHHHHHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHhhC---CCcEEEEEECCCcccccCCHHHH
Confidence 889999999999999999999999999999999999999999999999988763 499999999999433 5677888
Q ss_pred HhHcCccccCCcceEEEEeeecCCCCHHHHHHHHHHHHHhc
Q 029517 135 ARYLDLKKLDERVCMFEAVSGYDGFGIKESVEWLVEVMERS 175 (192)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~Sa~~~~gi~e~~~~i~~~i~~~ 175 (192)
.+++. ..+++++++||++|.|++++|++|.+.+.+.
T Consensus 170 ~~~~~-----~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~~ 205 (208)
T 3clv_A 170 QKYAQ-----DNNLLFIQTSAKTGTNIKNIFYMLAEEIYKN 205 (208)
T ss_dssp HHHHH-----HTTCEEEEECTTTCTTHHHHHHHHHHHHHHH
T ss_pred HHHHH-----HcCCcEEEEecCCCCCHHHHHHHHHHHHHHh
Confidence 88876 4577999999999999999999999887653
No 69
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=99.90 E-value=1.2e-23 Score=154.58 Aligned_cols=119 Identities=18% Similarity=0.221 Sum_probs=100.9
Q ss_pred ecCEEEEEEeCCCCcccHH-HHHHhhhcCCEEEEEEeCCCcccHHHHHHHHHHHHhCCCCCCCcEEEEEeCCCCCC--CC
Q 029517 53 VSNSKLVFWDLGGQPGLRS-IWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPD--AV 129 (192)
Q Consensus 53 ~~~~~~~i~D~~G~~~~~~-~~~~~~~~~d~ii~v~D~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~--~~ 129 (192)
+..+.+.+|||+|++.+.. .+..+++.+|++|+|||++++.+++.+..|+..+.......+.|+++|+||+|+.. .+
T Consensus 69 ~~~~~l~i~Dt~g~~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v 148 (195)
T 3cbq_A 69 KEEVTLVVYDIWEQGDAGGWLRDHCLQTGDAFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLARSREV 148 (195)
T ss_dssp TEEEEEEEECCCCCSGGGHHHHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHSTTSCCCEEEEEECTTCTTTCCS
T ss_pred CEEEEEEEEecCCCccchhhhHHHhhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEeechhccccCCc
Confidence 3457899999999988765 77888999999999999999999999999999888754335799999999999975 46
Q ss_pred CHHHHHhHcCccccCCcceEEEEeeecCCCCHHHHHHHHHHHHHhcc
Q 029517 130 SADELARYLDLKKLDERVCMFEAVSGYDGFGIKESVEWLVEVMERSK 176 (192)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~e~~~~i~~~i~~~~ 176 (192)
+.+++.+++. ..+++++++||++|.||+++|++|.+.+...+
T Consensus 149 ~~~~~~~~a~-----~~~~~~~e~Sa~~~~~v~~lf~~l~~~i~~~~ 190 (195)
T 3cbq_A 149 SLEEGRHLAG-----TLSCKHIETSAALHHNTRELFEGAVRQIRLRR 190 (195)
T ss_dssp CHHHHHHHHH-----HTTCEEEEEBTTTTBSHHHHHHHHHHHHHTTC
T ss_pred CHHHHHHHHH-----HhCCEEEEEcCCCCCCHHHHHHHHHHHHHHhc
Confidence 6777777765 34578999999999999999999999886544
No 70
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=99.90 E-value=1.7e-23 Score=149.45 Aligned_cols=144 Identities=21% Similarity=0.310 Sum_probs=116.9
Q ss_pred ccccHHHHHHHHhhhhccCCCCCCCCCCCCcceEEEE--EEe--cCEEEEEEeCCCCcccHHHHHHhhhcCCEEEEEEeC
Q 029517 14 TKTEFHTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGR--IEV--SNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDA 89 (192)
Q Consensus 14 kst~~~~l~~~~~~~~~~~~~~~~~~~~~T~g~~~~~--~~~--~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ii~v~D~ 89 (192)
|||++|+|++ +.+...+.||.|..+.. +.. ..+.+.+|||||++++...+..+++++|++++|+|+
T Consensus 19 KSsli~~l~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~ 88 (170)
T 1z0j_A 19 KSSIMWRFVE----------DSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGLERFRALAPMYYRGSAAAIIVYDI 88 (170)
T ss_dssp HHHHHHHHHH----------SCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGTHHHHTTCSEEEEEEET
T ss_pred HHHHHHHHHc----------CCCCCCCCCceeEEEEEEEEEECCeEEEEEEEcCCCchhhhcccHhhCcCCCEEEEEEEC
Confidence 6777777654 33455678888877653 333 357899999999999999999999999999999999
Q ss_pred CCcccHHHHHHHHHHHHhCCCCCCCcEEEEEeCCCCCC--CCCHHHHHhHcCccccCCcceEEEEeeecCCCCHHHHHHH
Q 029517 90 ACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPD--AVSADELARYLDLKKLDERVCMFEAVSGYDGFGIKESVEW 167 (192)
Q Consensus 90 ~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~e~~~~ 167 (192)
+++.+++.+..|+..+..... ...|+++|+||+|+.+ .+..++..+++. ..+.+++++||++|.|++++|++
T Consensus 89 ~~~~s~~~~~~~~~~l~~~~~-~~~~iilv~nK~Dl~~~~~v~~~~~~~~~~-----~~~~~~~~~Sa~~~~~i~~l~~~ 162 (170)
T 1z0j_A 89 TKEETFSTLKNWVRELRQHGP-PSIVVAIAGNKCDLTDVREVMERDAKDYAD-----SIHAIFVETSAKNAININELFIE 162 (170)
T ss_dssp TCHHHHHHHHHHHHHHHHHSC-TTSEEEEEEECTTCGGGCCSCHHHHHHHHH-----HTTCEEEECBTTTTBSHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHHHhCC-CCCcEEEEEECCccccccccCHHHHHHHHH-----HcCCEEEEEeCCCCcCHHHHHHH
Confidence 999999999999988877532 5789999999999965 455666766665 44689999999999999999999
Q ss_pred HHHHHH
Q 029517 168 LVEVME 173 (192)
Q Consensus 168 i~~~i~ 173 (192)
|.+.+.
T Consensus 163 i~~~i~ 168 (170)
T 1z0j_A 163 ISRRIP 168 (170)
T ss_dssp HHHHCC
T ss_pred HHHHHh
Confidence 988653
No 71
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=99.90 E-value=8.2e-24 Score=154.25 Aligned_cols=146 Identities=24% Similarity=0.341 Sum_probs=117.6
Q ss_pred ccccHHHHHHHHhhhhccCCCCCCCCCCCCcceEEEE--EE--ecCEEEEEEeCCCCcccHHHHHHhhhcCCEEEEEEeC
Q 029517 14 TKTEFHTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGR--IE--VSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDA 89 (192)
Q Consensus 14 kst~~~~l~~~~~~~~~~~~~~~~~~~~~T~g~~~~~--~~--~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ii~v~D~ 89 (192)
|||++|+|++ +.+...+.||+|.++.. +. ...+.+.+|||||++++...+..+++.+|++++|+|+
T Consensus 35 KSsli~~l~~----------~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~ 104 (189)
T 2gf9_A 35 KTSFLFRYAD----------DSFTPAFVSTVGIDFKVKTVYRHDKRIKLQIWDTAGQERYRTITTAYYRGAMGFLLMYDI 104 (189)
T ss_dssp HHHHHHHHHH----------SCCCCSCCCCCCCEEEEEEEEETTEEEEEEEEECCSCCSSCCSGGGGGTTCSEEEEEEET
T ss_pred HHHHHHHHHc----------CCCCCCcCCceeEEEEEEEEEECCeEEEEEEEeCCCcHHHhhhHHHhccCCCEEEEEEEC
Confidence 6666666653 34455677888877653 33 2357899999999999988889999999999999999
Q ss_pred CCcccHHHHHHHHHHHHhCCCCCCCcEEEEEeCCCCCC--CCCHHHHHhHcCccccCCcceEEEEeeecCCCCHHHHHHH
Q 029517 90 ACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPD--AVSADELARYLDLKKLDERVCMFEAVSGYDGFGIKESVEW 167 (192)
Q Consensus 90 ~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~e~~~~ 167 (192)
+++.+++.+..|+..+.... ..+.|+++|+||+|+.+ .+..+++.+++. ..+++++++||++|.|++++|++
T Consensus 105 ~~~~s~~~~~~~~~~i~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~g~gi~~l~~~ 178 (189)
T 2gf9_A 105 ANQESFAAVQDWATQIKTYS-WDNAQVILVGNKCDLEDERVVPAEDGRRLAD-----DLGFEFFEASAKENINVKQVFER 178 (189)
T ss_dssp TCHHHHHTHHHHHHHHHHHS-CTTCEEEEEEECTTCGGGCCSCHHHHHHHHH-----HHTCEEEECBTTTTBSHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHhc-CCCCCEEEEEECcccccccCCCHHHHHHHHH-----HcCCeEEEEECCCCCCHHHHHHH
Confidence 99999999999998887753 24789999999999965 455666766665 44679999999999999999999
Q ss_pred HHHHHHhc
Q 029517 168 LVEVMERS 175 (192)
Q Consensus 168 i~~~i~~~ 175 (192)
|.+.+.+.
T Consensus 179 l~~~i~~~ 186 (189)
T 2gf9_A 179 LVDVICEK 186 (189)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99987653
No 72
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=99.90 E-value=6.2e-24 Score=151.84 Aligned_cols=146 Identities=19% Similarity=0.280 Sum_probs=113.7
Q ss_pred ccccHHHHHHHHhhhhccCCCCCCCCCCCCcceEEEEE---EecCEEEEEEeCCCCcccHHHHHHhhhcCCEEEEEEeCC
Q 029517 14 TKTEFHTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRI---EVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAA 90 (192)
Q Consensus 14 kst~~~~l~~~~~~~~~~~~~~~~~~~~~T~g~~~~~~---~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ii~v~D~~ 90 (192)
|||++|+|++ +.+...+.||++..+... ....+.+.+|||||++++...+..+++.+|++++|+|++
T Consensus 16 Kssli~~l~~----------~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~ 85 (172)
T 2erx_A 16 KSSLVLRFVK----------GTFRESYIPTVEDTYRQVISCDKSICTLQITDTTGSHQFPAMQRLSISKGHAFILVYSIT 85 (172)
T ss_dssp HHHHHHHHHT----------CCCCSSCCCCSCEEEEEEEEETTEEEEEEEEECCSCSSCHHHHHHHHHHCSEEEEEEETT
T ss_pred HHHHHHHHHc----------CCCCCCCCCCccccEEEEEEECCEEEEEEEEECCCchhhHHHHHHhcccCCEEEEEEECc
Confidence 6777766653 445556778888766542 223568999999999999999999999999999999999
Q ss_pred CcccHHHHHHHHHHHHhCC-CCCCCcEEEEEeCCCCCC--CCCHHHHHhHcCccccCCcceEEEEeeecCCCCHHHHHHH
Q 029517 91 CPSRFEDSKTALEKVLRNE-DLQGAPLLILANKQDLPD--AVSADELARYLDLKKLDERVCMFEAVSGYDGFGIKESVEW 167 (192)
Q Consensus 91 ~~~s~~~~~~~~~~i~~~~-~~~~~piiiv~nK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~e~~~~ 167 (192)
++.+++.+..|+..+.+.. ...+.|+++|+||+|+.. .+..++...+.. ..+++++++||++|.|++++|++
T Consensus 86 ~~~~~~~~~~~~~~i~~~~~~~~~~pii~v~nK~Dl~~~~~v~~~~~~~~~~-----~~~~~~~~~Sa~~~~gi~~l~~~ 160 (172)
T 2erx_A 86 SRQSLEELKPIYEQICEIKGDVESIPIMLVGNKCDESPSREVQSSEAEALAR-----TWKCAFMETSAKLNHNVKELFQE 160 (172)
T ss_dssp CHHHHHTTHHHHHHHHHHHC---CCCEEEEEECGGGGGGCCSCHHHHHHHHH-----HHTCEEEECBTTTTBSHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHhCCCCCCCEEEEEEccccccccccCHHHHHHHHH-----HhCCeEEEecCCCCcCHHHHHHH
Confidence 9999998888887776642 224789999999999864 455556655554 34678999999999999999999
Q ss_pred HHHHHHh
Q 029517 168 LVEVMER 174 (192)
Q Consensus 168 i~~~i~~ 174 (192)
|.+.+.+
T Consensus 161 l~~~~~~ 167 (172)
T 2erx_A 161 LLNLEKR 167 (172)
T ss_dssp HHHTCCS
T ss_pred HHHHHhh
Confidence 9886543
No 73
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=99.90 E-value=8.9e-24 Score=154.58 Aligned_cols=144 Identities=16% Similarity=0.246 Sum_probs=114.0
Q ss_pred ccccHHHHHHHHhhhhccCCCCCCCCCCCCcceEEE-EEEe--cCEEEEEEeCCCCcccHHHHHHhhhcCCEEEEEEeCC
Q 029517 14 TKTEFHTLLEKLKSVYSNVEGLPPDRIVPTVGLNIG-RIEV--SNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAA 90 (192)
Q Consensus 14 kst~~~~l~~~~~~~~~~~~~~~~~~~~~T~g~~~~-~~~~--~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ii~v~D~~ 90 (192)
|||++|+|++ +.+...+.||++..+. .+.. ..+.+.+|||||++++...+..+++++|++++|+|++
T Consensus 31 Kssli~~l~~----------~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~ 100 (194)
T 2atx_A 31 KTCLLMSYAN----------DAFPEEYVPTVFDHYAVSVTVGGKQYLLGLYDTAGQEDYDRLRPLSYPMTDVFLICFSVV 100 (194)
T ss_dssp HHHHHHHHHH----------SSCCCSCCCSSCCCEEEEEESSSCEEEEEEECCCCSSSSTTTGGGGCTTCSEEEEEEETT
T ss_pred HHHHHHHHhc----------CCCCCCCCCcccceeEEEEEECCEEEEEEEEECCCCcchhHHHHHhcCCCCEEEEEEECC
Confidence 6666666654 3455677888887664 2333 3478999999999999988999999999999999999
Q ss_pred CcccHHHHH-HHHHHHHhCCCCCCCcEEEEEeCCCCCC--------------CCCHHHHHhHcCccccCCcce-EEEEee
Q 029517 91 CPSRFEDSK-TALEKVLRNEDLQGAPLLILANKQDLPD--------------AVSADELARYLDLKKLDERVC-MFEAVS 154 (192)
Q Consensus 91 ~~~s~~~~~-~~~~~i~~~~~~~~~piiiv~nK~Dl~~--------------~~~~~~~~~~~~~~~~~~~~~-~~~~~S 154 (192)
++.+++.+. .|+..+.... .+.|+++|+||+|+.. .+..+++.+++. ..+. +++++|
T Consensus 101 ~~~s~~~~~~~~~~~~~~~~--~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~-----~~~~~~~~~~S 173 (194)
T 2atx_A 101 NPASFQNVKEEWVPELKEYA--PNVPFLLIGTQIDLRDDPKTLARLNDMKEKPICVEQGQKLAK-----EIGACCYVECS 173 (194)
T ss_dssp CHHHHHHHHHTHHHHHHHHS--TTCCEEEEEECTTSTTCHHHHHHHTTTTCCCCCHHHHHHHHH-----HHTCSCEEECC
T ss_pred CHHHHHHHHHHHHHHHHHhC--CCCCEEEEEEChhhcccccchhhcccccCcccCHHHHHHHHH-----HcCCcEEEEee
Confidence 999999987 7888877653 4799999999999965 345556665554 3344 899999
Q ss_pred ecCCCCHHHHHHHHHHHHHh
Q 029517 155 GYDGFGIKESVEWLVEVMER 174 (192)
Q Consensus 155 a~~~~gi~e~~~~i~~~i~~ 174 (192)
|++|.||+++|++|.+.+..
T Consensus 174 a~~g~gi~~l~~~l~~~i~~ 193 (194)
T 2atx_A 174 ALTQKGLKTVFDEAIIAILT 193 (194)
T ss_dssp TTTCTTHHHHHHHHHHHHHC
T ss_pred CCCCCCHHHHHHHHHHHHhc
Confidence 99999999999999987753
No 74
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=99.90 E-value=8.4e-24 Score=152.33 Aligned_cols=148 Identities=22% Similarity=0.278 Sum_probs=115.9
Q ss_pred ccccHHHHHHHHhhhhccCCCCCCCCCCCCcceEEE--EEEec---CEEEEEEeCCCCcccHHHHHHhhhcCCEEEEEEe
Q 029517 14 TKTEFHTLLEKLKSVYSNVEGLPPDRIVPTVGLNIG--RIEVS---NSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVID 88 (192)
Q Consensus 14 kst~~~~l~~~~~~~~~~~~~~~~~~~~~T~g~~~~--~~~~~---~~~~~i~D~~G~~~~~~~~~~~~~~~d~ii~v~D 88 (192)
|||++|+|++. .+...+.||+|.++. .+... .+.+.+|||||++.+...+..+++++|++++|+|
T Consensus 19 Kssl~~~l~~~----------~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~~i~v~d 88 (178)
T 2hxs_A 19 KTSLTTCFAQE----------TFGKQYKQTIGLDFFLRRITLPGNLNVTLQIWDIGGQTIGGKMLDKYIYGAQGVLLVYD 88 (178)
T ss_dssp HHHHHHHHHGG----------GTTHHHHHTTTSSEEEEEEEETTTEEEEEEEEECTTCCTTCTTHHHHHTTCSEEEEEEE
T ss_pred HHHHHHHHHhC----------cCCCCCCCceeEEEEEEEEEeCCCCEEEEEEEECCCCccccchhhHHHhhCCEEEEEEE
Confidence 67777777643 233456778875543 44443 3899999999999999999999999999999999
Q ss_pred CCCcccHHHHHHHHHHHHhCCC-CCCCc-EEEEEeCCCCCC--CCCHHHHHhHcCccccCCcceEEEEeeecCCCCHHHH
Q 029517 89 AACPSRFEDSKTALEKVLRNED-LQGAP-LLILANKQDLPD--AVSADELARYLDLKKLDERVCMFEAVSGYDGFGIKES 164 (192)
Q Consensus 89 ~~~~~s~~~~~~~~~~i~~~~~-~~~~p-iiiv~nK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~e~ 164 (192)
++++.+++.+..|+..+..... ..+.| +++|+||+|+.+ .+..+++.+++. ..+++++++||++|.||+++
T Consensus 89 ~~~~~s~~~~~~~~~~i~~~~~~~~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~gi~~l 163 (178)
T 2hxs_A 89 ITNYQSFENLEDWYTVVKKVSEESETQPLVALVGNKIDLEHMRTIKPEKHLRFCQ-----ENGFSSHFVSAKTGDSVFLC 163 (178)
T ss_dssp TTCHHHHHTHHHHHHHHHHHHHHHTCCCEEEEEEECGGGGGGCSSCHHHHHHHHH-----HHTCEEEEECTTTCTTHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHhcccCCCCeEEEEEEccccccccccCHHHHHHHHH-----HcCCcEEEEeCCCCCCHHHH
Confidence 9999999999899888766311 01345 899999999975 456677777665 44679999999999999999
Q ss_pred HHHHHHHHHhcc
Q 029517 165 VEWLVEVMERSK 176 (192)
Q Consensus 165 ~~~i~~~i~~~~ 176 (192)
|++|.+.+.+..
T Consensus 164 ~~~l~~~~~~~~ 175 (178)
T 2hxs_A 164 FQKVAAEILGIK 175 (178)
T ss_dssp HHHHHHHHTTCC
T ss_pred HHHHHHHHHhhh
Confidence 999999887654
No 75
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=99.90 E-value=4.6e-24 Score=155.66 Aligned_cols=145 Identities=21% Similarity=0.213 Sum_probs=113.1
Q ss_pred ccccHHHHHHHHhhhhccCCCCCCCCCCCCcceEEEE---EEecCEEEEEEeCCCCcccHHHHHHhhhcCCEEEEEEeCC
Q 029517 14 TKTEFHTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGR---IEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAA 90 (192)
Q Consensus 14 kst~~~~l~~~~~~~~~~~~~~~~~~~~~T~g~~~~~---~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ii~v~D~~ 90 (192)
|||++|+|++ +.+...+.||++..+.. ++...+.+++|||||++++... ..+++.+|++++|||++
T Consensus 34 KTsLi~~l~~----------~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~-~~~~~~~~~~ilv~d~~ 102 (187)
T 3c5c_A 34 KSALTVKFLT----------KRFISEYDPNLEDTYSSEETVDHQPVHLRVMDTADLDTPRNC-ERYLNWAHAFLVVYSVD 102 (187)
T ss_dssp HHHHHHHHHH----------SSCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCC---CCCT-HHHHTTCSEEEEEEETT
T ss_pred HHHHHHHHHh----------CCCCcccCCCccceeeEEEEECCEEEEEEEEECCCCCcchhH-HHHHhhCCEEEEEEECC
Confidence 6666666654 34566788999877643 2334678999999999887664 56899999999999999
Q ss_pred CcccHHHHHHHHHHHHhCCC--CCCCcEEEEEeCCCCCC--CCCHHHHHhHcCccccCCcceEEEEeee-cCCCCHHHHH
Q 029517 91 CPSRFEDSKTALEKVLRNED--LQGAPLLILANKQDLPD--AVSADELARYLDLKKLDERVCMFEAVSG-YDGFGIKESV 165 (192)
Q Consensus 91 ~~~s~~~~~~~~~~i~~~~~--~~~~piiiv~nK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~Sa-~~~~gi~e~~ 165 (192)
++.+++.+..|+..+..... ..+.|+++|+||+|+.. .+..+++.+++. ..+++++++|| ++|.||+++|
T Consensus 103 ~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~-----~~~~~~~e~Sa~~~g~gv~~lf 177 (187)
T 3c5c_A 103 SRQSFDSSSSYLELLALHAKETQRSIPALLLGNKLDMAQYRQVTKAEGVALAG-----RFGCLFFEVSACLDFEHVQHVF 177 (187)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECGGGGGGCSSCHHHHHHHHH-----HHTCEEEECCSSSCSHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHhhccCCCCCEEEEEECcchhhcCccCHHHHHHHHH-----HcCCcEEEEeecCccccHHHHH
Confidence 99999999999988876421 14789999999999964 566777777776 45679999999 8999999999
Q ss_pred HHHHHHHHh
Q 029517 166 EWLVEVMER 174 (192)
Q Consensus 166 ~~i~~~i~~ 174 (192)
++|.+.+.+
T Consensus 178 ~~l~~~i~~ 186 (187)
T 3c5c_A 178 HEAVREARR 186 (187)
T ss_dssp HHHHHHHHC
T ss_pred HHHHHHHhh
Confidence 999987753
No 76
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=99.90 E-value=5.7e-23 Score=145.74 Aligned_cols=146 Identities=18% Similarity=0.239 Sum_probs=117.1
Q ss_pred ccccHHHHHHHHhhhhccCCCCCCCCCCCCcceEEEE-EE--ecCEEEEEEeCCCCcccHHHHHHhhhcCCEEEEEEeCC
Q 029517 14 TKTEFHTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGR-IE--VSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAA 90 (192)
Q Consensus 14 kst~~~~l~~~~~~~~~~~~~~~~~~~~~T~g~~~~~-~~--~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ii~v~D~~ 90 (192)
|||++|+|++. .+...+.+|.+..+.. +. ...+.+.+||+||++++...+..+++.+|++++|+|++
T Consensus 16 Kssl~~~l~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~ 85 (166)
T 2ce2_X 16 KSALTIQLIQN----------HFVDECDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAIN 85 (166)
T ss_dssp HHHHHHHHHHS----------SCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCCCSSCCHHHHHHHHHCSEEEEEEETT
T ss_pred HHHHHHHHHhC----------cCccccCCccceEEEEEEEECCEEEEEEEEECCCchhhhHHHHHhhccCCEEEEEEECC
Confidence 77777777643 3344566777765542 32 33578999999999999999999999999999999999
Q ss_pred CcccHHHHHHHHHHHHhCCCCCCCcEEEEEeCCCCCC-CCCHHHHHhHcCccccCCcceEEEEeeecCCCCHHHHHHHHH
Q 029517 91 CPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPD-AVSADELARYLDLKKLDERVCMFEAVSGYDGFGIKESVEWLV 169 (192)
Q Consensus 91 ~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~e~~~~i~ 169 (192)
+..+++.+..|+..+.......+.|+++|+||+|+.. ....+++.+++. ..+++++++||++|.|+++++++|.
T Consensus 86 ~~~~~~~~~~~~~~i~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~gi~~l~~~l~ 160 (166)
T 2ce2_X 86 NTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKSDLAARTVESRQAQDLAR-----SYGIPYIETSAKTRQGVEDAFYTLV 160 (166)
T ss_dssp CHHHHHHHHHHHHHHHHHHTCSCCCEEEEEECTTCSCCCSCHHHHHHHHH-----HHTCCEEEECTTTCTTHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEchhhhhcccCHHHHHHHHH-----HcCCeEEEecCCCCCCHHHHHHHHH
Confidence 9999999999998887754335799999999999876 455666666665 4467899999999999999999999
Q ss_pred HHHHh
Q 029517 170 EVMER 174 (192)
Q Consensus 170 ~~i~~ 174 (192)
+.+.+
T Consensus 161 ~~~~~ 165 (166)
T 2ce2_X 161 REIRQ 165 (166)
T ss_dssp HHHHT
T ss_pred HHHHh
Confidence 88754
No 77
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=99.90 E-value=9.4e-24 Score=158.06 Aligned_cols=152 Identities=21% Similarity=0.349 Sum_probs=111.8
Q ss_pred ccccHHHHHHHHhhhhccCCCCCCCCCCCCcceEEEE--EEec--CEEEEEEeCCCCcccHHHHHHhhhcCCEEEEEEeC
Q 029517 14 TKTEFHTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGR--IEVS--NSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDA 89 (192)
Q Consensus 14 kst~~~~l~~~~~~~~~~~~~~~~~~~~~T~g~~~~~--~~~~--~~~~~i~D~~G~~~~~~~~~~~~~~~d~ii~v~D~ 89 (192)
|||++|+|++ +.+...+.||+|.++.. +... .+.+.+|||||++++...+..+++.+|++|+|+|+
T Consensus 26 KSsli~~l~~----------~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~vilV~D~ 95 (223)
T 3cpj_B 26 KSNLLSRFTK----------NEFNMDSKSTIGVEFATRTLEIEGKRIKAQIWDTAGQERYRAITSAYYRGAVGALIVYDI 95 (223)
T ss_dssp HHHHHHHHHH----------CCCCC------CCSEEEEEEEETTEEEEEEEECCTTTTTTTCCCGGGTTTCCEEEEEEC-
T ss_pred HHHHHHHHhc----------CCCCCCCCCcccceeEEEEEEECCEEEEEEEEECCCccchhhhHHHHhccCCEEEEEEeC
Confidence 5666666543 34555667888866553 4443 47999999999999988889999999999999999
Q ss_pred CCcccHHHHHHHHHHHHhCCCCCCCcEEEEEeCCCCCC--CCCHHHHHhHcCccccCCcceEEEEeeecCCCCHHHHHHH
Q 029517 90 ACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPD--AVSADELARYLDLKKLDERVCMFEAVSGYDGFGIKESVEW 167 (192)
Q Consensus 90 ~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~e~~~~ 167 (192)
+++.+++.+..|+..+..... .++|+++|+||+|+.. .+..+++.+++. ..+++++++||++|.||+++|++
T Consensus 96 ~~~~s~~~~~~~l~~i~~~~~-~~~piilv~nK~Dl~~~~~v~~~~~~~~~~-----~~~~~~~~~Sa~~~~gi~~l~~~ 169 (223)
T 3cpj_B 96 SKSSSYENCNHWLSELRENAD-DNVAVGLIGNKSDLAHLRAVPTEESKTFAQ-----ENQLLFTETSALNSENVDKAFEE 169 (223)
T ss_dssp CCHHHHHHHHHHHHHHHHHCC---CEEEEEECCGGGGGGCCSCHHHHHHHHH-----HTTCEEEECCCC-CCCHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHhCC-CCCeEEEEEECcccccccccCHHHHHHHHH-----HcCCEEEEEeCCCCCCHHHHHHH
Confidence 999999999999988876532 5789999999999965 456677777765 45689999999999999999999
Q ss_pred HHHHHHhcchhhhh
Q 029517 168 LVEVMERSKRTEML 181 (192)
Q Consensus 168 i~~~i~~~~~~~~~ 181 (192)
|.+.+.+.......
T Consensus 170 l~~~i~~~~~~~~~ 183 (223)
T 3cpj_B 170 LINTIYQKVSKHQM 183 (223)
T ss_dssp HHHHHTTCC-----
T ss_pred HHHHHHHHhhhccc
Confidence 99998876544443
No 78
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=99.90 E-value=5.9e-24 Score=156.37 Aligned_cols=147 Identities=15% Similarity=0.220 Sum_probs=111.1
Q ss_pred ccccHHHHHHHHhhhhccCCCCCCCCCCCCcceEEEE-EEe--cCEEEEEEeCCCCcccHHHHHHhhhcCCEEEEEEeCC
Q 029517 14 TKTEFHTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGR-IEV--SNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAA 90 (192)
Q Consensus 14 kst~~~~l~~~~~~~~~~~~~~~~~~~~~T~g~~~~~-~~~--~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ii~v~D~~ 90 (192)
|||++|+|++. .+...+.||++..+.. +.. ..+.+.+|||||++++...+..+++++|++++|+|++
T Consensus 33 Kssl~~~l~~~----------~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~ 102 (201)
T 2q3h_A 33 KTSLVVSYTTN----------GYPTEYIPTAFDNFSAVVSVDGRPVRLQLCDTAGQDEFDKLRPLCYTNTDIFLLCFSVV 102 (201)
T ss_dssp HHHHHHHHHC------------------CCSSEEEEEEEEETTEEEEEEEEECCCSTTCSSSGGGGGTTCSEEEEEEETT
T ss_pred HHHHHHHHHhC----------CCCCCCCCcccceeEEEEEECCEEEEEEEEECCCCHHHHHHhHhhcCCCcEEEEEEECC
Confidence 66766666532 3456678888876653 333 3468899999999999888888999999999999999
Q ss_pred CcccHHHHH-HHHHHHHhCCCCCCCcEEEEEeCCCCCC--------------CCCHHHHHhHcCccccCCcce-EEEEee
Q 029517 91 CPSRFEDSK-TALEKVLRNEDLQGAPLLILANKQDLPD--------------AVSADELARYLDLKKLDERVC-MFEAVS 154 (192)
Q Consensus 91 ~~~s~~~~~-~~~~~i~~~~~~~~~piiiv~nK~Dl~~--------------~~~~~~~~~~~~~~~~~~~~~-~~~~~S 154 (192)
++.+++.+. .|+..+.... .+.|+++|+||+|+.. .+..+++..++. ..+. +++++|
T Consensus 103 ~~~s~~~~~~~~~~~~~~~~--~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~-----~~~~~~~~~~S 175 (201)
T 2q3h_A 103 SPSSFQNVSEKWVPEIRCHC--PKAPIILVGTQSDLREDVKVLIELDKCKEKPVPEEAAKLLAE-----EIKAASYIECS 175 (201)
T ss_dssp CHHHHHHHHHTHHHHHHHHC--SSSCEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHH-----HHTCSEEEECC
T ss_pred CHHHHHHHHHHHHHHHHHhC--CCCCEEEEEECHhhhhchhhhhhhcccccccCCHHHHHHHHH-----hcCCcEEEEEe
Confidence 999999987 7888877653 4799999999999863 345556665554 3344 899999
Q ss_pred ecCCCCHHHHHHHHHHHHHhcch
Q 029517 155 GYDGFGIKESVEWLVEVMERSKR 177 (192)
Q Consensus 155 a~~~~gi~e~~~~i~~~i~~~~~ 177 (192)
|++|.||+++|++|.+.+.+.+.
T Consensus 176 a~~g~gi~~l~~~l~~~~~~~~~ 198 (201)
T 2q3h_A 176 ALTQKNLKEVFDAAIVAGIQYSD 198 (201)
T ss_dssp TTTCTTHHHHHHHHHHHHHHHHC
T ss_pred cCCCCCHHHHHHHHHHHHhcccc
Confidence 99999999999999998876543
No 79
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=99.90 E-value=7.3e-24 Score=157.71 Aligned_cols=118 Identities=19% Similarity=0.224 Sum_probs=95.8
Q ss_pred ecCEEEEEEeCCCCcc-cHHHHHHhhhcCCEEEEEEeCCCcccHHHHHHHHHHHHhCCCCCCCcEEEEEeCCCCCC--CC
Q 029517 53 VSNSKLVFWDLGGQPG-LRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPD--AV 129 (192)
Q Consensus 53 ~~~~~~~i~D~~G~~~-~~~~~~~~~~~~d~ii~v~D~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~--~~ 129 (192)
+..+.+.+|||+|++. +......+++.++++|+|||+++..+|+.+..|...+.......++|+++|+||+|+.+ .+
T Consensus 84 ~~~~~l~~~Dt~g~~~~~~~l~~~~~~~a~~~ilVydvt~~~sf~~~~~~~~~l~~~~~~~~~piilVgNK~DL~~~r~v 163 (211)
T 2g3y_A 84 GESATIILLDMWENKGENEWLHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLVRCREV 163 (211)
T ss_dssp TEEEEEEEECCTTTTHHHHHHHHCCCCCCSEEEEEEETTCHHHHHHHHHHHHHHHTSGGGTTSCEEEEEECTTCGGGCCS
T ss_pred CeeeEEEEeecCCCcchhhhHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCcEEEEEEChHHhcCceE
Confidence 3456789999999887 45566677889999999999999999999999988877643335799999999999964 45
Q ss_pred CHHHHHhHcCccccCCcceEEEEeeecCCCCHHHHHHHHHHHHHhc
Q 029517 130 SADELARYLDLKKLDERVCMFEAVSGYDGFGIKESVEWLVEVMERS 175 (192)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~e~~~~i~~~i~~~ 175 (192)
..++...++. ..++++++|||++|.||+++|++|.+.+...
T Consensus 164 ~~~e~~~~a~-----~~~~~~~e~SAk~g~~v~elf~~l~~~i~~~ 204 (211)
T 2g3y_A 164 SVSEGRACAV-----VFDCKFIETSAAVQHNVKELFEGIVRQVRLR 204 (211)
T ss_dssp CHHHHHHHHH-----HHTCEEEECBTTTTBSHHHHHHHHHHHHHHH
T ss_pred eHHHHHHHHH-----HcCCEEEEEeCCCCCCHHHHHHHHHHHHHHh
Confidence 6666555554 3457899999999999999999999987543
No 80
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=99.90 E-value=5.4e-24 Score=157.92 Aligned_cols=148 Identities=17% Similarity=0.239 Sum_probs=114.0
Q ss_pred ccccHHHHHHHHhhhhccCCCCCCCCCCCCcceEEEE-E--EecCEEEEEEeCCCCcccHHHHHHhhhcCCEEEEEEeCC
Q 029517 14 TKTEFHTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGR-I--EVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAA 90 (192)
Q Consensus 14 kst~~~~l~~~~~~~~~~~~~~~~~~~~~T~g~~~~~-~--~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ii~v~D~~ 90 (192)
|||++++|+ . +.+...+.||++..+.. + +...+.+.+|||||+++|...+..+++++|++|+|+|++
T Consensus 22 KTsli~~l~----~------~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~ 91 (212)
T 2j0v_A 22 KTCMLICYT----S------NKFPTDYIPTVFDNFSANVAVDGQIVNLGLWDTAGQEDYSRLRPLSYRGADIFVLAFSLI 91 (212)
T ss_dssp HHHHHHHHH----H------SCCCSSCCCSSCCCEEEEEECSSCEEEEEEECCCCCCCCCC--CGGGTTCSEEEEEEETT
T ss_pred HHHHHHHHh----c------CCCCccCCCccceeEEEEEEECCEEEEEEEEECCCcHHHHHHHHhhccCCCEEEEEEECC
Confidence 666666665 3 34566778888876652 2 234579999999999999988989999999999999999
Q ss_pred CcccHHHHH-HHHHHHHhCCCCCCCcEEEEEeCCCCCCC----------CCHHHHHhHcCccccCCcc-eEEEEeeecCC
Q 029517 91 CPSRFEDSK-TALEKVLRNEDLQGAPLLILANKQDLPDA----------VSADELARYLDLKKLDERV-CMFEAVSGYDG 158 (192)
Q Consensus 91 ~~~s~~~~~-~~~~~i~~~~~~~~~piiiv~nK~Dl~~~----------~~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~ 158 (192)
++.+++.+. .|+..+.... .+.|+++|+||+|+.+. +..+++.+++. ..+ .+++++||++|
T Consensus 92 ~~~s~~~~~~~~~~~~~~~~--~~~piilv~nK~Dl~~~~~~~~~~~~~v~~~~~~~~~~-----~~~~~~~~~~Sa~~g 164 (212)
T 2j0v_A 92 SKASYENVLKKWMPELRRFA--PNVPIVLVGTKLDLRDDKGYLADHTNVITSTQGEELRK-----QIGAAAYIECSSKTQ 164 (212)
T ss_dssp CHHHHHHHHHTHHHHHHHHC--TTCCEEEEEECHHHHTCHHHHHTCSSCCCHHHHHHHHH-----HHTCSEEEECCTTTC
T ss_pred CHHHHHHHHHHHHHHHHHhC--CCCCEEEEEeCHHhhhCccccccccCCCCHHHHHHHHH-----HcCCceEEEccCCCC
Confidence 999999986 7888877653 47999999999998652 24556666554 334 48999999999
Q ss_pred CCHHHHHHHHHHHHHhcchh
Q 029517 159 FGIKESVEWLVEVMERSKRT 178 (192)
Q Consensus 159 ~gi~e~~~~i~~~i~~~~~~ 178 (192)
.||+++|++|.+.+.+..++
T Consensus 165 ~gi~~l~~~l~~~~~~~~~~ 184 (212)
T 2j0v_A 165 QNVKAVFDTAIKVVLQPPRR 184 (212)
T ss_dssp TTHHHHHHHHHHHHHCC---
T ss_pred CCHHHHHHHHHHHHhhhhhh
Confidence 99999999999998876543
No 81
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.90 E-value=2.4e-23 Score=154.19 Aligned_cols=148 Identities=22% Similarity=0.349 Sum_probs=117.9
Q ss_pred ccccHHHHHHHHhhhhccCCCCCCCCCCCCcceEEE--EEEecC--EEEEEEeCCCCcccHHHHHHhhhcCCEEEEEEeC
Q 029517 14 TKTEFHTLLEKLKSVYSNVEGLPPDRIVPTVGLNIG--RIEVSN--SKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDA 89 (192)
Q Consensus 14 kst~~~~l~~~~~~~~~~~~~~~~~~~~~T~g~~~~--~~~~~~--~~~~i~D~~G~~~~~~~~~~~~~~~d~ii~v~D~ 89 (192)
|||++|+|++ +.+...+.||++.++. .+...+ +.+.+|||||++.+...+..+++.+|++++|+|+
T Consensus 33 KSsli~~l~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~ 102 (213)
T 3cph_A 33 KSCLLVRFVE----------DKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQERFRTITTAYYRGAMGIILVYDV 102 (213)
T ss_dssp HHHHHHHHHH----------CCCCCSSSCCCSCCEEEEEEEETTEEEEEEEECCTTGGGGTCCCHHHHTTCSEEEEEEET
T ss_pred HHHHHHHHHh----------CCCCcccCCcccceEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhccCCEEEEEEEC
Confidence 6666666653 3445567888886655 344443 7899999999999988889999999999999999
Q ss_pred CCcccHHHHHHHHHHHHhCCCCCCCcEEEEEeCCCCCC-CCCHHHHHhHcCccccCCcceEEEEeeecCCCCHHHHHHHH
Q 029517 90 ACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPD-AVSADELARYLDLKKLDERVCMFEAVSGYDGFGIKESVEWL 168 (192)
Q Consensus 90 ~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~e~~~~i 168 (192)
+++.+++.+..|+..+..... .+.|+++|+||+|+.. ....+++.+++. ..+++++++||++|.||+++|++|
T Consensus 103 ~~~~s~~~~~~~~~~i~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~gi~~l~~~l 176 (213)
T 3cph_A 103 TDERTFTNIKQWFKTVNEHAN-DEAQLLLVGNKSDMETRVVTADQGEALAK-----ELGIPFIESSAKNDDNVNEIFFTL 176 (213)
T ss_dssp TCHHHHHTHHHHHHHHHHHTT-TCSEEEEEEECTTCSSCCSCHHHHHHHHH-----HHTCCEEECBTTTTBSSHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHhcC-CCCCEEEEEECCCCcccccCHHHHHHHHH-----HcCCEEEEEeCCCCCCHHHHHHHH
Confidence 999999999999988877542 4789999999999954 455566666654 345789999999999999999999
Q ss_pred HHHHHhcch
Q 029517 169 VEVMERSKR 177 (192)
Q Consensus 169 ~~~i~~~~~ 177 (192)
.+.+.+...
T Consensus 177 ~~~~~~~~~ 185 (213)
T 3cph_A 177 AKLIQEKID 185 (213)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 998876543
No 82
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=99.90 E-value=1.4e-23 Score=149.57 Aligned_cols=144 Identities=24% Similarity=0.363 Sum_probs=117.7
Q ss_pred ccccHHHHHHHHhhhhccCCCCCCCCCCCCcceEEEE--EEe--cCEEEEEEeCCCCcccHHHHHHhhhcCCEEEEEEeC
Q 029517 14 TKTEFHTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGR--IEV--SNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDA 89 (192)
Q Consensus 14 kst~~~~l~~~~~~~~~~~~~~~~~~~~~T~g~~~~~--~~~--~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ii~v~D~ 89 (192)
|||++|+|++ +.+...+.||+|.++.. +.. ..+.+.+|||||++.+...+..+++.+|++++|+|+
T Consensus 18 Kssl~~~l~~----------~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~ 87 (168)
T 1z2a_A 18 KSSMIQRYCK----------GIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQEEFDAITKAYYRGAQACVLVFST 87 (168)
T ss_dssp HHHHHHHHHH----------CCCCCCSSCCCSSSEEEEEEEETTEEEEEEEECCTTGGGTTCCCHHHHTTCCEEEEEEET
T ss_pred HHHHHHHHHc----------CCCCCCCCCceEEEEEEEEEEECCEEEEEEEEcCCCcHhHHHHHHHHhcCCCEEEEEEEC
Confidence 6777777764 33456678888876653 332 357899999999999888889999999999999999
Q ss_pred CCcccHHHHHHHHHHHHhCCCCCCCcEEEEEeCCCCCC--CCCHHHHHhHcCccccCCcceEEEEeeecCCCCHHHHHHH
Q 029517 90 ACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPD--AVSADELARYLDLKKLDERVCMFEAVSGYDGFGIKESVEW 167 (192)
Q Consensus 90 ~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~e~~~~ 167 (192)
+++.+++.+..|+..+.... .+.|+++|+||+|+.+ .+..+++.+++. ..+++++++||++|.|++++|++
T Consensus 88 ~~~~s~~~~~~~~~~i~~~~--~~~piilv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~~i~~l~~~ 160 (168)
T 1z2a_A 88 TDRESFEAISSWREKVVAEV--GDIPTALVQNKIDLLDDSCIKNEEAEGLAK-----RLKLRFYRTSVKEDLNVSEVFKY 160 (168)
T ss_dssp TCHHHHHTHHHHHHHHHHHH--CSCCEEEEEECGGGGGGCSSCHHHHHHHHH-----HHTCEEEECBTTTTBSSHHHHHH
T ss_pred cCHHHHHHHHHHHHHHHHhC--CCCCEEEEEECcccCcccccCHHHHHHHHH-----HcCCeEEEEecCCCCCHHHHHHH
Confidence 99999999999998887653 5789999999999865 456677777665 45679999999999999999999
Q ss_pred HHHHHHh
Q 029517 168 LVEVMER 174 (192)
Q Consensus 168 i~~~i~~ 174 (192)
|.+.+.+
T Consensus 161 l~~~~~~ 167 (168)
T 1z2a_A 161 LAEKHLQ 167 (168)
T ss_dssp HHHHHHC
T ss_pred HHHHHhh
Confidence 9987753
No 83
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=99.90 E-value=1.8e-23 Score=155.67 Aligned_cols=147 Identities=17% Similarity=0.220 Sum_probs=95.7
Q ss_pred ccccHHHHHHHHhhhhccCCCCCCCCCCCCcceEEEE-E--EecCEEEEEEeCCCCcccHHHHHHhhhcCCEEEEEEeCC
Q 029517 14 TKTEFHTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGR-I--EVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAA 90 (192)
Q Consensus 14 kst~~~~l~~~~~~~~~~~~~~~~~~~~~T~g~~~~~-~--~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ii~v~D~~ 90 (192)
|||++|+|+ . +.+...+.||++..+.. + ++..+.+.+|||||++++...+..+++++|++++|+|++
T Consensus 47 KSsli~~l~----~------~~~~~~~~~t~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~ 116 (214)
T 2j1l_A 47 KTSLLMVFA----D------GAFPESYTPTVFERYMVNLQVKGKPVHLHIWDTAGQDDYDRLRPLFYPDASVLLLCFDVT 116 (214)
T ss_dssp HHHHHHHHH----C-------------CCCCCEEEEEEEEETTEEEEEEEEEC---------------CEEEEEEEEETT
T ss_pred HHHHHHHHH----c------CCCCCCCCCccceeEEEEEEECCEEEEEEEEECCCchhhhHHHHHHhccCCEEEEEEECc
Confidence 566666655 3 33445667788766542 2 334578999999999999999999999999999999999
Q ss_pred CcccHHHHH-HHHHHHHhCCCCCCCcEEEEEeCCCCCCC--------------CCHHHHHhHcCccccCCcce-EEEEee
Q 029517 91 CPSRFEDSK-TALEKVLRNEDLQGAPLLILANKQDLPDA--------------VSADELARYLDLKKLDERVC-MFEAVS 154 (192)
Q Consensus 91 ~~~s~~~~~-~~~~~i~~~~~~~~~piiiv~nK~Dl~~~--------------~~~~~~~~~~~~~~~~~~~~-~~~~~S 154 (192)
++.+++.+. .|+..+.... .++|+++|+||+|+... +..+++.+++. ..+. +++++|
T Consensus 117 ~~~s~~~~~~~~~~~~~~~~--~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~-----~~~~~~~~~~S 189 (214)
T 2j1l_A 117 SPNSFDNIFNRWYPEVNHFC--KKVPIIVVGCKTDLRKDKSLVNKLRRNGLEPVTYHRGQEMAR-----SVGAVAYLECS 189 (214)
T ss_dssp CHHHHHHHHHTHHHHHHHHC--SSCCEEEEEECGGGGSCHHHHHHHHHTTCCCCCHHHHHHHHH-----HTTCSEEEECB
T ss_pred CHHHHHHHHHHHHHHHHHhC--CCCCEEEEEEChhhhccchhhhhhcccccCcccHHHHHHHHH-----hcCCCEEEEec
Confidence 999999986 6888776653 47899999999999652 34445555554 3344 899999
Q ss_pred ecCCCCHHHHHHHHHHHHHhcch
Q 029517 155 GYDGFGIKESVEWLVEVMERSKR 177 (192)
Q Consensus 155 a~~~~gi~e~~~~i~~~i~~~~~ 177 (192)
|++|.||+++|++|.+.+.+.+.
T Consensus 190 A~~g~gi~el~~~l~~~~~~~~~ 212 (214)
T 2j1l_A 190 ARLHDNVHAVFQEAAEVALSSRG 212 (214)
T ss_dssp TTTTBSHHHHHHHHHHHHHHC--
T ss_pred CCCCCCHHHHHHHHHHHHHHhhc
Confidence 99999999999999998876653
No 84
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.90 E-value=1.5e-23 Score=155.26 Aligned_cols=146 Identities=21% Similarity=0.282 Sum_probs=106.3
Q ss_pred ccccHHHHHHHHhhhhccCCCCCCCCCCCCcceEEEE-EEe--cCEEEEEEeCCCCcccHHHHHHhhhcCCEEEEEEeCC
Q 029517 14 TKTEFHTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGR-IEV--SNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAA 90 (192)
Q Consensus 14 kst~~~~l~~~~~~~~~~~~~~~~~~~~~T~g~~~~~-~~~--~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ii~v~D~~ 90 (192)
|||++|+|++ +.+...+.||++..+.. +.. ..+.+.+|||||++++...+..+++++|++++|+|++
T Consensus 38 KSsli~~l~~----------~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~ 107 (207)
T 2fv8_A 38 KTCLLIVFSK----------DEFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSVD 107 (207)
T ss_dssp HHHHHHHHHH----------SSCC-------CCEEEEEEEETTEEEEEEEEECTTCTTCTTTGGGGCTTCCEEEEEEETT
T ss_pred HHHHHHHHhc----------CCCCCcCCCcccceEEEEEEECCEEEEEEEEECCCcHHHHHHHHhhcCCCCEEEEEEECC
Confidence 5666666654 34455677888877643 333 3478999999999999888888999999999999999
Q ss_pred CcccHHHH-HHHHHHHHhCCCCCCCcEEEEEeCCCCCCC--------------CCHHHHHhHcCccccCCcce-EEEEee
Q 029517 91 CPSRFEDS-KTALEKVLRNEDLQGAPLLILANKQDLPDA--------------VSADELARYLDLKKLDERVC-MFEAVS 154 (192)
Q Consensus 91 ~~~s~~~~-~~~~~~i~~~~~~~~~piiiv~nK~Dl~~~--------------~~~~~~~~~~~~~~~~~~~~-~~~~~S 154 (192)
++.+++.+ ..|+..+.... .+.|+++|+||+|+... +..++..+++. ..+. +++++|
T Consensus 108 ~~~s~~~~~~~~~~~~~~~~--~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~-----~~~~~~~~~~S 180 (207)
T 2fv8_A 108 SPDSLENIPEKWVPEVKHFC--PNVPIILVANKKDLRSDEHVRTELARMKQEPVRTDDGRAMAV-----RIQAYDYLECS 180 (207)
T ss_dssp CHHHHHHHHHTHHHHHHHHS--TTCCEEEEEECGGGGGCHHHHHHHHHTTCCCCCHHHHHHHHH-----HTTCSEEEECC
T ss_pred CHHHHHHHHHHHHHHHHHhC--CCCCEEEEEEchhhhccccchhhhhhcccCCCCHHHHHHHHH-----hcCCCEEEEee
Confidence 99999988 67777776643 47999999999998643 33333443333 2233 899999
Q ss_pred ecCCCCHHHHHHHHHHHHHhcc
Q 029517 155 GYDGFGIKESVEWLVEVMERSK 176 (192)
Q Consensus 155 a~~~~gi~e~~~~i~~~i~~~~ 176 (192)
|++|.||+++|++|.+.+.+.+
T Consensus 181 A~~g~gi~el~~~l~~~i~~~~ 202 (207)
T 2fv8_A 181 AKTKEGVREVFETATRAALQKR 202 (207)
T ss_dssp TTTCTTHHHHHHHHHHHHHSCC
T ss_pred CCCCCCHHHHHHHHHHHHHHHh
Confidence 9999999999999999887553
No 85
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=99.90 E-value=4.8e-23 Score=148.60 Aligned_cols=148 Identities=20% Similarity=0.280 Sum_probs=104.3
Q ss_pred ccccHHHHHHHHhhhhccCCCCCCCCCCCCcceEEEE--EEe---cCEEEEEEeCCCCcccHHHHHHhhhcCCEEEEEEe
Q 029517 14 TKTEFHTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGR--IEV---SNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVID 88 (192)
Q Consensus 14 kst~~~~l~~~~~~~~~~~~~~~~~~~~~T~g~~~~~--~~~---~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ii~v~D 88 (192)
|||++|+|++ +.+...+.||+|.++.. +.. ..+.+.+|||||++.+...+..+++.+|++++|+|
T Consensus 21 KSsli~~l~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d 90 (182)
T 1ky3_A 21 KTSLMHRYVN----------DKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAGQERFQSLGVAFYRGADCCVLVYD 90 (182)
T ss_dssp HHHHHHHHHH----------SCCCTTC---CCCSCEEEEECCSSSCCEEEEEECCC----------CCSTTCCEEEEEEE
T ss_pred HHHHHHHHHh----------CcCCcccCCccceEEEEEEEEEcCCcEEEEEEEECCCChHhhhhhHHHhhcCCEEEEEEE
Confidence 6666666654 33445667887765543 332 35789999999999999999999999999999999
Q ss_pred CCCcccHHHHHHHHHHHHhCC---CCCCCcEEEEEeCCCCCC---CCCHHHHHhHcCccccCCcceEEEEeeecCCCCHH
Q 029517 89 AACPSRFEDSKTALEKVLRNE---DLQGAPLLILANKQDLPD---AVSADELARYLDLKKLDERVCMFEAVSGYDGFGIK 162 (192)
Q Consensus 89 ~~~~~s~~~~~~~~~~i~~~~---~~~~~piiiv~nK~Dl~~---~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~ 162 (192)
++++.+++.+..|+..+.... ...++|+++|+||+|+.. .+..+++.++.. ...+.+++++||++|.||+
T Consensus 91 ~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~v~~~~~~~~~~----~~~~~~~~~~Sa~~~~gi~ 166 (182)
T 1ky3_A 91 VTNASSFENIKSWRDEFLVHANVNSPETFPFVILGNKIDAEESKKIVSEKSAQELAK----SLGDIPLFLTSAKNAINVD 166 (182)
T ss_dssp TTCHHHHHTHHHHHHHHHHHHCCSCTTTCCEEEEEECTTSCGGGCCSCHHHHHHHHH----HTTSCCEEEEBTTTTBSHH
T ss_pred CCChHHHHHHHHHHHHHHHHhcccCcCCCcEEEEEECCccccccccCCHHHHHHHHH----hcCCCeEEEEecCCCCCHH
Confidence 999999999999988887642 125789999999999954 345666666654 1346789999999999999
Q ss_pred HHHHHHHHHHHhc
Q 029517 163 ESVEWLVEVMERS 175 (192)
Q Consensus 163 e~~~~i~~~i~~~ 175 (192)
++|++|.+.+.+.
T Consensus 167 ~l~~~l~~~~~~~ 179 (182)
T 1ky3_A 167 TAFEEIARSALQQ 179 (182)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh
Confidence 9999999988654
No 86
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=99.90 E-value=1.2e-23 Score=152.80 Aligned_cols=144 Identities=19% Similarity=0.262 Sum_probs=114.7
Q ss_pred ccccHHHHHHHHhhhhccCCCCCCCCCCCCcceEEEE-E--EecCEEEEEEeCCCCcccHHHHHHhhhcCCEEEEEEeCC
Q 029517 14 TKTEFHTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGR-I--EVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAA 90 (192)
Q Consensus 14 kst~~~~l~~~~~~~~~~~~~~~~~~~~~T~g~~~~~-~--~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ii~v~D~~ 90 (192)
|||++|+|++ +.+...+.||++..+.. + +...+.+.+|||||++.|...+..+++++|++++|+|++
T Consensus 20 KSsli~~l~~----------~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~ 89 (184)
T 1m7b_A 20 KTALLHVFAK----------DCFPENYVPTVFENYTASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVLICFDIS 89 (184)
T ss_dssp HHHHHHHHHH----------SCCCSSCCCCSEEEEEEEEECSSCEEEEEEEEECCSGGGTTTGGGGCTTCSEEEEEEETT
T ss_pred HHHHHHHHhc----------CCCCCCCCCccceeEEEEEEECCEEEEEEEEECCCChhhhhhHHhhcCCCcEEEEEEECC
Confidence 6777666654 34556778898877652 2 234578999999999999888888999999999999999
Q ss_pred CcccHHHH-HHHHHHHHhCCCCCCCcEEEEEeCCCCCC--------------CCCHHHHHhHcCccccCCcc-eEEEEee
Q 029517 91 CPSRFEDS-KTALEKVLRNEDLQGAPLLILANKQDLPD--------------AVSADELARYLDLKKLDERV-CMFEAVS 154 (192)
Q Consensus 91 ~~~s~~~~-~~~~~~i~~~~~~~~~piiiv~nK~Dl~~--------------~~~~~~~~~~~~~~~~~~~~-~~~~~~S 154 (192)
++.+++.+ ..|+..+.... .+.|+++|+||+|+.+ .++.+++.+++. ..+ .+++++|
T Consensus 90 ~~~s~~~~~~~~~~~i~~~~--~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~-----~~~~~~~~e~S 162 (184)
T 1m7b_A 90 RPETLDSVLKKWKGEIQEFC--PNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAK-----QIGAATYIECS 162 (184)
T ss_dssp CHHHHHHHHHTHHHHHHHHC--TTCEEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHH-----HHTCSEEEECB
T ss_pred CHHHHHHHHHHHHHHHHHHC--CCCCEEEEEEcchhhcchhhHhhhhhcccCCCCHHHHHHHHH-----HcCCcEEEEee
Confidence 99999998 67887776653 4799999999999963 356666666665 223 6899999
Q ss_pred ec-CCCCHHHHHHHHHHHHHh
Q 029517 155 GY-DGFGIKESVEWLVEVMER 174 (192)
Q Consensus 155 a~-~~~gi~e~~~~i~~~i~~ 174 (192)
|+ +|.||+++|+++.+.+.+
T Consensus 163 a~~~~~gi~~l~~~i~~~~l~ 183 (184)
T 1m7b_A 163 ALQSENSVRDIFHVATLACVN 183 (184)
T ss_dssp TTTBHHHHHHHHHHHHHHHHT
T ss_pred ecCCCcCHHHHHHHHHHHHhc
Confidence 99 689999999999987754
No 87
>1cip_A Protein (guanine nucleotide-binding protein alpha-1 subunit); GTPase, hydrolase; HET: GNP; 1.50A {Rattus norvegicus} SCOP: a.66.1.1 c.37.1.8 PDB: 1agr_A* 1bof_A* 1gdd_A* 1gfi_A* 1gia_A* 1gp2_A* 3ffa_A* 3ffb_A* 1gg2_A* 1git_A* 1svs_A* 1svk_A* 2zjz_A* 2zjy_A* 3ums_A* 2pz2_A* 2pz3_A* 1as0_A* 1as2_A* 1as3_A* ...
Probab=99.89 E-value=1.8e-23 Score=166.31 Aligned_cols=172 Identities=19% Similarity=0.340 Sum_probs=131.7
Q ss_pred hhhhHHHHhh------hhccccH------HHHHHHHhhhhccCCCCCCC------CCCCCcceEEEEEEecCEEEEEEeC
Q 029517 2 FSLFYGLWKY------IFTKTEF------HTLLEKLKSVYSNVEGLPPD------RIVPTVGLNIGRIEVSNSKLVFWDL 63 (192)
Q Consensus 2 ~~~~~~~~~~------~~kst~~------~~l~~~~~~~~~~~~~~~~~------~~~~T~g~~~~~~~~~~~~~~i~D~ 63 (192)
++.+..+|++ +.++.-+ ..+++.+..+... ++.++ .+.||+|++...+..+.+.+++|||
T Consensus 123 ~~~i~~lw~d~~iq~~~~~~~e~~l~dsa~yfl~~~~ri~~~--~Y~PT~~Dil~~~~~T~Gi~~~~~~~~~~~l~iwDt 200 (353)
T 1cip_A 123 AGVIKRLWKDSGVQACFNRSREYQLNDSAAYYLNDLDRIAQP--NYIPTQQDVLRTRVKTTGIVETHFTFKDLHFKMFDV 200 (353)
T ss_dssp HHHHHHHHHCHHHHHHHTTGGGSCCCTTHHHHHTTHHHHTST--TCCCCHHHHHTCCCCCCSEEEEEEEETTEEEEEEEE
T ss_pred HHHHHHHHCCHHHHHHHHhhhhcccCccHHHHHHHHHHHhcC--CCCCCccccccccCceeceEEEEEeeCCeeEEEEeC
Confidence 4567777777 3333322 2455544443321 33222 4578999999889988999999999
Q ss_pred CCCcccHHHHHHhhhcCCEEEEEEeCCC----------cccHHHHHHHHHHHHhCCCCCCCcEEEEEeCCCCCC------
Q 029517 64 GGQPGLRSIWEKYYEEAHAVVFVIDAAC----------PSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPD------ 127 (192)
Q Consensus 64 ~G~~~~~~~~~~~~~~~d~ii~v~D~~~----------~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~------ 127 (192)
+|+++++..|..|+++++++|+|+|+++ ..+++++..|+..+.......+.|+++++||+|+.+
T Consensus 201 ~GQe~~r~~w~~yf~~a~~iIfV~dls~~d~~l~ed~~~nr~~e~~~~~~~i~~~~~~~~~piiLv~NK~DL~~~ki~~~ 280 (353)
T 1cip_A 201 GGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNKWFTDTSIILFLNKKDLFEEKIKKS 280 (353)
T ss_dssp CCSGGGGGGGGGGCTTCSEEEEEEEGGGGGCEETTEEEEEHHHHHHHHHHHHHTCGGGTTSEEEEEEECHHHHHHHHTTS
T ss_pred CCchhhhHHHHHHHhcCCEEEEEEECccccccccccchhhhHHHHHHHHHHHHcCccccCCcEEEEEECcCchhhhcccc
Confidence 9999999999999999999999999998 567999999999998865556899999999999842
Q ss_pred -----------CCCHHHHHhHcCc-----ccc-CCcceEEEEeeecCCCCHHHHHHHHHHHHHhc
Q 029517 128 -----------AVSADELARYLDL-----KKL-DERVCMFEAVSGYDGFGIKESVEWLVEVMERS 175 (192)
Q Consensus 128 -----------~~~~~~~~~~~~~-----~~~-~~~~~~~~~~Sa~~~~gi~e~~~~i~~~i~~~ 175 (192)
.++.+++.+++.. ... ...++.+++|||++|.||+++|+++.+.+.+.
T Consensus 281 ~l~~~fp~~~g~~~~~e~~~~~~~~f~~l~~~~~~~~~~~~etSA~~~~nV~~vF~~v~~~i~~~ 345 (353)
T 1cip_A 281 PLTICYPEYAGSNTYEEAAAYIQCQFEDLNKRKDTKEIYTHFTCATDTKNVQFVFDAVTDVIIKN 345 (353)
T ss_dssp CGGGTCTTCCSCSCHHHHHHHHHHHHHTTCSCTTTCCEEEEECCTTCHHHHHHHHHHHHHHHHHH
T ss_pred chhhcccccCCCCCHHHHHHHHHHHHHHhhcccCCCceEEEEEECcCchhHHHHHHHHHHHHHHH
Confidence 3566777776641 100 13578999999999999999999999988653
No 88
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=99.89 E-value=2.2e-23 Score=151.04 Aligned_cols=146 Identities=16% Similarity=0.246 Sum_probs=113.3
Q ss_pred ccccHHHHHHHHhhhhccCCCCCCCCCCCCcceEEEE---EEecCEEEEEEeCCCCcccHHHHHHhhhcCCEEEEEEeCC
Q 029517 14 TKTEFHTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGR---IEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAA 90 (192)
Q Consensus 14 kst~~~~l~~~~~~~~~~~~~~~~~~~~~T~g~~~~~---~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ii~v~D~~ 90 (192)
|||++++|++ +.+...+.||++..+.. +++..+.+.+|||||++++...+..+++.+|++++|+|++
T Consensus 18 Kssl~~~l~~----------~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~ 87 (186)
T 1mh1_A 18 KTCLLISYTT----------NAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVSLICFSLV 87 (186)
T ss_dssp HHHHHHHHHH----------SSCCSSCCCCSCCEEEEEEEETTEEEEEEEECCCCSGGGTTTGGGGCTTCSEEEEEEETT
T ss_pred HHHHHHHHHc----------CCCCCCcCCcccceeEEEEEECCEEEEEEEEECCCCHhHHHHHHHhccCCcEEEEEEECC
Confidence 6777766653 34456677888766542 3334578899999999999888888999999999999999
Q ss_pred CcccHHHHH-HHHHHHHhCCCCCCCcEEEEEeCCCCCC--------------CCCHHHHHhHcCccccCCcce-EEEEee
Q 029517 91 CPSRFEDSK-TALEKVLRNEDLQGAPLLILANKQDLPD--------------AVSADELARYLDLKKLDERVC-MFEAVS 154 (192)
Q Consensus 91 ~~~s~~~~~-~~~~~i~~~~~~~~~piiiv~nK~Dl~~--------------~~~~~~~~~~~~~~~~~~~~~-~~~~~S 154 (192)
++.+++.+. .|+..+.... .+.|+++|+||+|+.. .+..++..++.. ..+. +++++|
T Consensus 88 ~~~s~~~~~~~~~~~~~~~~--~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~-----~~~~~~~~~~S 160 (186)
T 1mh1_A 88 SPASFENVRAKWYPEVRHHC--PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAK-----EIGAVKYLECS 160 (186)
T ss_dssp CHHHHHHHHHTHHHHHHHHS--TTSCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHH-----HTTCSEEEECC
T ss_pred ChhhHHHHHHHHHHHHHHhC--CCCCEEEEeEcccccccchhhhhhcccccccCCHHHHHHHHH-----hcCCcEEEEec
Confidence 999999987 6877777653 3799999999999864 234445555544 3344 899999
Q ss_pred ecCCCCHHHHHHHHHHHHHhcc
Q 029517 155 GYDGFGIKESVEWLVEVMERSK 176 (192)
Q Consensus 155 a~~~~gi~e~~~~i~~~i~~~~ 176 (192)
|++|.|++++|++|.+.+.+..
T Consensus 161 a~~g~gi~~l~~~l~~~~~~~~ 182 (186)
T 1mh1_A 161 ALTQRGLKTVFDEAIRAVLCPP 182 (186)
T ss_dssp TTTCTTHHHHHHHHHHHHSCCC
T ss_pred CCCccCHHHHHHHHHHHHhccc
Confidence 9999999999999999887554
No 89
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...
Probab=99.89 E-value=3e-24 Score=160.42 Aligned_cols=147 Identities=16% Similarity=0.307 Sum_probs=116.5
Q ss_pred ccccHHHHHHHHhhhhccCCCCCCCCCCCCcceEEEEEE----ecCEEEEEEeCCCCcccHHHHHHhhhcCCEEEEEEeC
Q 029517 14 TKTEFHTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIE----VSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDA 89 (192)
Q Consensus 14 kst~~~~l~~~~~~~~~~~~~~~~~~~~~T~g~~~~~~~----~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ii~v~D~ 89 (192)
|||++|+|+... +...+.||.|.+..... ...+.+.+|||||++.+...+..+++++|++++|+|+
T Consensus 28 KSsli~~~~~~~----------~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~ 97 (221)
T 3gj0_A 28 KTTFVKRHLTGE----------FEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLRDGYYIQAQCAIIMFDV 97 (221)
T ss_dssp HHHHHTTBHHHH----------HTCEEETTTTEEEEEEEEEETTEEEEEEEEEECSGGGTSCCCHHHHTTCCEEEEEEET
T ss_pred HHHHHHHHHcCC----------CCCCCCCccceeEEEEEEEECCEEEEEEEEeCCChHHHhHHHHHHHhcCCEEEEEEEC
Confidence 778887754322 23456778877766432 3467899999999999988889999999999999999
Q ss_pred CCcccHHHHHHHHHHHHhCCCCCCCcEEEEEeCCCCCCCCCHHHHHhHcCccccCCcceEEEEeeecCCCCHHHHHHHHH
Q 029517 90 ACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAVSADELARYLDLKKLDERVCMFEAVSGYDGFGIKESVEWLV 169 (192)
Q Consensus 90 ~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~e~~~~i~ 169 (192)
++..+++.+..|+..+.... .++|+++|+||+|+.+....++..+++. ..+++++++||++|.||+++|++|.
T Consensus 98 ~~~~s~~~~~~~~~~~~~~~--~~~p~ilv~nK~Dl~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~gi~~l~~~l~ 170 (221)
T 3gj0_A 98 TSRVTYKNVPNWHRDLVRVC--ENIPIVLCGNKVDIKDRKVKAKSIVFHR-----KKNLQYYDISAKSNYNFEKPFLWLA 170 (221)
T ss_dssp TCHHHHHTHHHHHHHHHHHS--TTCCEEEEEECTTSSSCSSCGGGCCHHH-----HHTCEEEECBGGGTBTTTHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHhC--CCCCEEEEEECCccccccccHHHHHHHH-----HcCCEEEEEeCCCCCCHHHHHHHHH
Confidence 99999999999999998764 4799999999999976433333333332 3467999999999999999999999
Q ss_pred HHHHhcch
Q 029517 170 EVMERSKR 177 (192)
Q Consensus 170 ~~i~~~~~ 177 (192)
+.+.....
T Consensus 171 ~~l~~~~~ 178 (221)
T 3gj0_A 171 RKLIGDPN 178 (221)
T ss_dssp HHHHTCTT
T ss_pred HHHHhCcc
Confidence 99876643
No 90
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=99.89 E-value=3.4e-23 Score=152.76 Aligned_cols=150 Identities=16% Similarity=0.299 Sum_probs=118.0
Q ss_pred ccccHHHHHHHHhhhhccCCCCCCCCCCCCcceEEEE--EEe--cCEEEEEEeCCCCcccHHHHHHhhhcCCEEEEEEeC
Q 029517 14 TKTEFHTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGR--IEV--SNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDA 89 (192)
Q Consensus 14 kst~~~~l~~~~~~~~~~~~~~~~~~~~~T~g~~~~~--~~~--~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ii~v~D~ 89 (192)
|||++|+|++ +.+...+.||+|.++.. +.. ..+.+.+|||||++.+...+..+++++|++|+|+|+
T Consensus 21 KSsli~~l~~----------~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~ 90 (207)
T 1vg8_A 21 KTSLMNQYVN----------KKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQERFQSLGVAFYRGADCCVLVFDV 90 (207)
T ss_dssp HHHHHHHHHH----------SCCCSSCCCCCSEEEEEEEEESSSCEEEEEEEEECSSGGGSCSCCGGGTTCSEEEEEEET
T ss_pred HHHHHHHHHc----------CCCCCCCCCcccceEEEEEEEECCEEEEEEEEeCCCcHHHHHhHHHHHhCCcEEEEEEEC
Confidence 6666666654 33456678888877654 322 347899999999999888888899999999999999
Q ss_pred CCcccHHHHHHHHHHHHhCCC---CCCCcEEEEEeCCCCCC-CCCHHHHHhHcCccccCCcceEEEEeeecCCCCHHHHH
Q 029517 90 ACPSRFEDSKTALEKVLRNED---LQGAPLLILANKQDLPD-AVSADELARYLDLKKLDERVCMFEAVSGYDGFGIKESV 165 (192)
Q Consensus 90 ~~~~s~~~~~~~~~~i~~~~~---~~~~piiiv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~e~~ 165 (192)
+++.+++.+..|+..+..... ..+.|+++|+||+|+.. ....+++.+++. ...+.+++++||++|.||+++|
T Consensus 91 ~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~----~~~~~~~~~~Sa~~g~gi~~l~ 166 (207)
T 1vg8_A 91 TAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDLENRQVATKRAQAWCY----SKNNIPYFETSAKEAINVEQAF 166 (207)
T ss_dssp TCHHHHHTHHHHHHHHHHHHCCSSGGGSCEEEEEECTTSSCCCSCHHHHHHHHH----HTTSCCEEECBTTTTBSHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHhcccccCCCCcEEEEEECCCCcccccCHHHHHHHHH----hcCCceEEEEeCCCCCCHHHHH
Confidence 999999999999888765421 13689999999999975 455666666654 1346789999999999999999
Q ss_pred HHHHHHHHhcch
Q 029517 166 EWLVEVMERSKR 177 (192)
Q Consensus 166 ~~i~~~i~~~~~ 177 (192)
++|.+.+.+...
T Consensus 167 ~~l~~~~~~~~~ 178 (207)
T 1vg8_A 167 QTIARNALKQET 178 (207)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHhcc
Confidence 999998876554
No 91
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=99.89 E-value=5.5e-23 Score=151.46 Aligned_cols=144 Identities=19% Similarity=0.262 Sum_probs=111.0
Q ss_pred ccccHHHHHHHHhhhhccCCCCCCCCCCCCcceEEE-EEE--ecCEEEEEEeCCCCcccHHHHHHhhhcCCEEEEEEeCC
Q 029517 14 TKTEFHTLLEKLKSVYSNVEGLPPDRIVPTVGLNIG-RIE--VSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAA 90 (192)
Q Consensus 14 kst~~~~l~~~~~~~~~~~~~~~~~~~~~T~g~~~~-~~~--~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ii~v~D~~ 90 (192)
|||++|+|.+ +.+...+.||++.++. .+. +..+.+.+|||||++++...+..+++++|++++|+|++
T Consensus 38 KSsli~~l~~----------~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~ 107 (201)
T 2gco_A 38 KTCLLIVFSK----------DQFPEVYVPTVFENYIADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSID 107 (201)
T ss_dssp HHHHHHHHHH----------SSCCSSCCCSSCCCCEEEEEETTEEEEEEEECCCCSGGGTTTGGGGCTTCSEEEEEEETT
T ss_pred HHHHHHHHHh----------CcCCcccCCcccceEEEEEEECCEEEEEEEEECCCchhHHHHHHHhcCCCCEEEEEEECC
Confidence 6666666653 3445567788877664 233 33578999999999999888888999999999999999
Q ss_pred CcccHHHH-HHHHHHHHhCCCCCCCcEEEEEeCCCCCCC--------------CCHHHHHhHcCccccCCcce-EEEEee
Q 029517 91 CPSRFEDS-KTALEKVLRNEDLQGAPLLILANKQDLPDA--------------VSADELARYLDLKKLDERVC-MFEAVS 154 (192)
Q Consensus 91 ~~~s~~~~-~~~~~~i~~~~~~~~~piiiv~nK~Dl~~~--------------~~~~~~~~~~~~~~~~~~~~-~~~~~S 154 (192)
++.+++.+ ..|+..+.... .+.|+++|+||+|+... +..++..+++. ..+. +++++|
T Consensus 108 ~~~s~~~~~~~~~~~~~~~~--~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~-----~~~~~~~~~~S 180 (201)
T 2gco_A 108 SPDSLENIPEKWTPEVKHFC--PNVPIILVGNKKDLRQDEHTRRELAKMKQEPVRSEEGRDMAN-----RISAFGYLECS 180 (201)
T ss_dssp CHHHHHHHHHTHHHHHHHHS--TTCCEEEEEECGGGTTCHHHHHHHHTTTCCCCCHHHHHHHHH-----HTTCSEEEECC
T ss_pred CHHHHHHHHHHHHHHHHHhC--CCCCEEEEEecHHhhcCccchhhhcccccCcCCHHHHHHHHH-----hCCCcEEEEee
Confidence 99999988 57777766543 47999999999999753 34444444443 2234 899999
Q ss_pred ecCCCCHHHHHHHHHHHHHh
Q 029517 155 GYDGFGIKESVEWLVEVMER 174 (192)
Q Consensus 155 a~~~~gi~e~~~~i~~~i~~ 174 (192)
|++|.||+++|++|.+.+.+
T Consensus 181 A~~g~gi~~l~~~i~~~~l~ 200 (201)
T 2gco_A 181 AKTKEGVREVFEMATRAGLQ 200 (201)
T ss_dssp TTTCTTHHHHHHHHHHHHHC
T ss_pred CCCCCCHHHHHHHHHHHHhc
Confidence 99999999999999987754
No 92
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=99.89 E-value=5.8e-23 Score=152.94 Aligned_cols=138 Identities=17% Similarity=0.218 Sum_probs=113.8
Q ss_pred CCCCCCCCCCcceEEEEEEe----c-CEEEEEEeCCCCcccHHHHHHhhhcCCEEEEEEeCCCcccHHHHHHHHHHHHhC
Q 029517 34 GLPPDRIVPTVGLNIGRIEV----S-NSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRN 108 (192)
Q Consensus 34 ~~~~~~~~~T~g~~~~~~~~----~-~~~~~i~D~~G~~~~~~~~~~~~~~~d~ii~v~D~~~~~s~~~~~~~~~~i~~~ 108 (192)
+.+...+.+|.+........ . .+.+.+|||||++.+...+..+++++|++|+|+|+++..+++.+..|+..+...
T Consensus 34 ~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~ 113 (218)
T 4djt_A 34 GRFEKNYNATVGAVNHPVTFLDDQGNVIKFNVWDTAGQEKKAVLKDVYYIGASGAILFFDVTSRITCQNLARWVKEFQAV 113 (218)
T ss_dssp CSTTCEEETTTTEEEEEEEEEBTTSCEEEEEEEEECSGGGTSCCCHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHH
T ss_pred CCCCCCCCCccceeeEEEEEEeCCCcEEEEEEEecCCchhhchHHHHHhhcCCEEEEEEeCCCHHHHHHHHHHHHHHHHh
Confidence 44556778888877765432 1 278999999999998888889999999999999999999999999998888765
Q ss_pred CCCCCCcEEEEEeCCCCCC--CCCHHHHHhHcCccccCCcceEEEEeeecCCCCHHHHHHHHHHHHHhcch
Q 029517 109 EDLQGAPLLILANKQDLPD--AVSADELARYLDLKKLDERVCMFEAVSGYDGFGIKESVEWLVEVMERSKR 177 (192)
Q Consensus 109 ~~~~~~piiiv~nK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~e~~~~i~~~i~~~~~ 177 (192)
.. .+.|+++|+||+|+.+ .+..+++.+++. ..+++++++||++|.||+++|++|.+.+.+..+
T Consensus 114 ~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~g~gv~~l~~~l~~~~~~~~~ 178 (218)
T 4djt_A 114 VG-NEAPIVVCANKIDIKNRQKISKKLVMEVLK-----GKNYEYFEISAKTAHNFGLPFLHLARIFTGRPD 178 (218)
T ss_dssp HC-SSSCEEEEEECTTCC----CCHHHHHHHTT-----TCCCEEEEEBTTTTBTTTHHHHHHHHHHHCCTT
T ss_pred cC-CCCCEEEEEECCCCccccccCHHHHHHHHH-----HcCCcEEEEecCCCCCHHHHHHHHHHHHhcccc
Confidence 32 4689999999999976 456667777776 667899999999999999999999999876543
No 93
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=99.89 E-value=2.8e-23 Score=153.78 Aligned_cols=144 Identities=19% Similarity=0.261 Sum_probs=113.9
Q ss_pred ccccHHHHHHHHhhhhccCCCCCCCCCCCCcceEEEE-EE--ecCEEEEEEeCCCCcccHHHHHHhhhcCCEEEEEEeCC
Q 029517 14 TKTEFHTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGR-IE--VSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAA 90 (192)
Q Consensus 14 kst~~~~l~~~~~~~~~~~~~~~~~~~~~T~g~~~~~-~~--~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ii~v~D~~ 90 (192)
|||++|+|. . +.+...+.||++..+.. +. ...+.+.+|||||++.|...+..+++++|++|+|||++
T Consensus 41 KSsLi~~l~----~------~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~D~~ 110 (205)
T 1gwn_A 41 KTALLHVFA----K------DCFPENYVPTVFENYTASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVLICFDIS 110 (205)
T ss_dssp HHHHHHHHH----H------SCCCSSCCCCSEEEEEEEEESSSSEEEEEEEEECCSGGGTTTGGGGCTTCSEEEEEEETT
T ss_pred HHHHHHHHh----c------CCCCCCcCCccceeEEEEEEECCEEEEEEEEeCCCcHhhhHHHHhhccCCCEEEEEEECC
Confidence 566655554 3 44556778999887642 32 34578999999999999888888999999999999999
Q ss_pred CcccHHHH-HHHHHHHHhCCCCCCCcEEEEEeCCCCCC--------------CCCHHHHHhHcCccccCCcc-eEEEEee
Q 029517 91 CPSRFEDS-KTALEKVLRNEDLQGAPLLILANKQDLPD--------------AVSADELARYLDLKKLDERV-CMFEAVS 154 (192)
Q Consensus 91 ~~~s~~~~-~~~~~~i~~~~~~~~~piiiv~nK~Dl~~--------------~~~~~~~~~~~~~~~~~~~~-~~~~~~S 154 (192)
++.+++.+ ..|+..+.... .+.|+++|+||+|+.. .++.+++.+++. ..+ .+++++|
T Consensus 111 ~~~s~~~~~~~~~~~i~~~~--~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~-----~~~~~~~~e~S 183 (205)
T 1gwn_A 111 RPETLDSVLKKWKGEIQEFC--PNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAK-----QIGAATYIECS 183 (205)
T ss_dssp CHHHHHHHHHTHHHHHHHHC--TTCEEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHH-----HHTCSEEEECC
T ss_pred CHHHHHHHHHHHHHHHHHHC--CCCCEEEEEechhhccchhhhhhhcccccCCCCHHHHHHHHH-----HcCCCEEEEee
Confidence 99999998 68888777653 4799999999999963 355666666664 223 6899999
Q ss_pred ec-CCCCHHHHHHHHHHHHHh
Q 029517 155 GY-DGFGIKESVEWLVEVMER 174 (192)
Q Consensus 155 a~-~~~gi~e~~~~i~~~i~~ 174 (192)
|+ +|.||+++|++|.+.+.+
T Consensus 184 Ak~~~~gv~~lf~~l~~~~l~ 204 (205)
T 1gwn_A 184 ALQSENSVRDIFHVATLACVN 204 (205)
T ss_dssp TTTCHHHHHHHHHHHHHHHHH
T ss_pred eccCCcCHHHHHHHHHHHHhh
Confidence 99 689999999999987764
No 94
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=99.88 E-value=7.4e-23 Score=149.99 Aligned_cols=149 Identities=15% Similarity=0.135 Sum_probs=105.8
Q ss_pred hccccHHHHHHHHhhhhccCCCCCCCCCCCCcceEEE--EE--EecCEEEEEEeCCCCcc-cHHHHHHhhhcCCEEEEEE
Q 029517 13 FTKTEFHTLLEKLKSVYSNVEGLPPDRIVPTVGLNIG--RI--EVSNSKLVFWDLGGQPG-LRSIWEKYYEEAHAVVFVI 87 (192)
Q Consensus 13 ~kst~~~~l~~~~~~~~~~~~~~~~~~~~~T~g~~~~--~~--~~~~~~~~i~D~~G~~~-~~~~~~~~~~~~d~ii~v~ 87 (192)
=|||++|+|++... .+...+ +++|.++. .+ ++..+.+.+|||+|++. +......+++.+|++++||
T Consensus 18 GKSsL~~~~~~~~~--------~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~Dt~~~~~~~~~~~~~~~~~~~~~i~v~ 88 (192)
T 2cjw_A 18 GKSTLANIFAGVHD--------SMDSDX-EVLGEDTYERTLMVDGESATIILLDMWENKGENEWLHDHCMQVGDAYLIVY 88 (192)
T ss_dssp SHHHHHHHHHHHSC--------CC-----GGGCTTEEEEEEEETTEEEEEEEECCCCC----CTTGGGHHHHCSEEEEEE
T ss_pred CHHHHHHHHhcCcC--------CcCccc-cccceeEEEEEEEECCeEEEEEEEEeccCcchhhhHHHhhcccCCEEEEEE
Confidence 37888888775421 122222 33444332 23 33456889999999875 3345566788999999999
Q ss_pred eCCCcccHHHHHHHHHHHHhCCCCCCCcEEEEEeCCCCCC--CCCHHHHHhHcCccccCCcceEEEEeeecCCCCHHHHH
Q 029517 88 DAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPD--AVSADELARYLDLKKLDERVCMFEAVSGYDGFGIKESV 165 (192)
Q Consensus 88 D~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~e~~ 165 (192)
|+++..+|+.+..|+..+.......+.|+++|+||+|+.. .+..++...++. ..+++++++||++|.||+++|
T Consensus 89 dv~~~~s~~~~~~~~~~l~~~~~~~~~piilV~NK~Dl~~~r~v~~~~~~~~a~-----~~~~~~~e~SA~~g~~v~~lf 163 (192)
T 2cjw_A 89 SITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLVRXREVSVSEGRAXAV-----VFDXKFIETSAAVQHNVKELF 163 (192)
T ss_dssp ETTCHHHHHHHHHHHHHHHHHTTTSCCCEEEEEECTTCGGGCCSCHHHHHHHHH-----HTTCEEEECBTTTTBSHHHHH
T ss_pred ECCCHHHHHHHHHHHHHHHHhhCCCCCeEEEEEechhhhccccccHHHHHHHHH-----HhCCceEEeccccCCCHHHHH
Confidence 9999999999999988777643335799999999999864 455555555443 335789999999999999999
Q ss_pred HHHHHHHHhc
Q 029517 166 EWLVEVMERS 175 (192)
Q Consensus 166 ~~i~~~i~~~ 175 (192)
+++.+.+...
T Consensus 164 ~~l~~~~~~~ 173 (192)
T 2cjw_A 164 EGIVRQVRLR 173 (192)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHhh
Confidence 9999988544
No 95
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=99.88 E-value=1.7e-23 Score=151.17 Aligned_cols=143 Identities=16% Similarity=0.233 Sum_probs=99.7
Q ss_pred ccccHHHHHHHHhhhhccCCCCCCCCCCCCcceEEEE---EEecCEEEEEEeCCCCcccHHHHHHhhhcCCEEEEEEeCC
Q 029517 14 TKTEFHTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGR---IEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAA 90 (192)
Q Consensus 14 kst~~~~l~~~~~~~~~~~~~~~~~~~~~T~g~~~~~---~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ii~v~D~~ 90 (192)
|||++|+|++ +.+...+.||++..+.. +++..+.+++|||||++++...+..+++++|++++|+|++
T Consensus 21 Kssl~~~~~~----------~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~ 90 (182)
T 3bwd_D 21 KTCLLISYTS----------NTFPTDYVPTVFDNFSANVVVNGATVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLI 90 (182)
T ss_dssp HHHHHHHHHH----------SCCC----------CBCCCC-------CEEECCCC-CTTTTTGGGGGTTCSEEEEEEETT
T ss_pred HHHHHHHHhc----------CCCCCCCCCeeeeeEEEEEEECCEEEEEEEEECCCChhhhhhHHhhccCCCEEEEEEECC
Confidence 6666666653 33455667777755432 3445678899999999999988999999999999999999
Q ss_pred CcccHHHHH-HHHHHHHhCCCCCCCcEEEEEeCCCCCCC------------CCHHHHHhHcCccccCCcce-EEEEeeec
Q 029517 91 CPSRFEDSK-TALEKVLRNEDLQGAPLLILANKQDLPDA------------VSADELARYLDLKKLDERVC-MFEAVSGY 156 (192)
Q Consensus 91 ~~~s~~~~~-~~~~~i~~~~~~~~~piiiv~nK~Dl~~~------------~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~ 156 (192)
++.+++.+. .|+..+.... .+.|+++|+||+|+.+. +..+++.++.. ..+. +++++||+
T Consensus 91 ~~~s~~~~~~~~~~~~~~~~--~~~piilv~nK~Dl~~~~~~~~~~~~~~~v~~~~~~~~~~-----~~~~~~~~~~Sa~ 163 (182)
T 3bwd_D 91 SKASYENVSKKWIPELKHYA--PGVPIVLVGTKLDLRDDKQFFIDHPGAVPITTVQGEELKK-----LIGAPAYIECSSK 163 (182)
T ss_dssp CHHHHHHHHHTHHHHHHHHC--TTCCEEEEEECHHHHTCHHHHHHC--CCCCCHHHHHHHHH-----HHTCSEEEECCTT
T ss_pred CHHHHHHHHHHHHHHHHHhC--CCCCEEEEEechhhhcCcccccccccCCCCCHHHHHHHHH-----HcCCCEEEEEECC
Confidence 999999987 6888777653 47999999999998652 24455555554 3344 89999999
Q ss_pred CCCCHHHHHHHHHHHHH
Q 029517 157 DGFGIKESVEWLVEVME 173 (192)
Q Consensus 157 ~~~gi~e~~~~i~~~i~ 173 (192)
+|.||+++|++|.+.+.
T Consensus 164 ~~~gi~~l~~~l~~~i~ 180 (182)
T 3bwd_D 164 SQENVKGVFDAAIRVVL 180 (182)
T ss_dssp TCTTHHHHHHHHHHHHS
T ss_pred CCCCHHHHHHHHHHHHh
Confidence 99999999999998764
No 96
>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_B*
Probab=99.88 E-value=2.1e-23 Score=163.32 Aligned_cols=132 Identities=19% Similarity=0.212 Sum_probs=97.6
Q ss_pred CCCCCcceEEEEEEecCEEEEEEeCCCCcccHH---HHHHhhhcCCEEEEEEeCCCc--ccHHHHHHHHHHHHhCCCCCC
Q 029517 39 RIVPTVGLNIGRIEVSNSKLVFWDLGGQPGLRS---IWEKYYEEAHAVVFVIDAACP--SRFEDSKTALEKVLRNEDLQG 113 (192)
Q Consensus 39 ~~~~T~g~~~~~~~~~~~~~~i~D~~G~~~~~~---~~~~~~~~~d~ii~v~D~~~~--~s~~~~~~~~~~i~~~~~~~~ 113 (192)
.+.||+|.++..++ ..++++||||+|+++|+. .+..|+++++++|+|||+++. ++++.+..|+..+.... ++
T Consensus 30 ~~~~Tig~~~~~v~-~~v~LqIWDTAGQErf~~~~l~~~~yyr~a~~~IlV~Ditd~~~~~~~~l~~~l~~~~~~~--~~ 106 (331)
T 3r7w_B 30 YLESTSNPSLEHFS-TLIDLAVMELPGQLNYFEPSYDSERLFKSVGALVYVIDSQDEYINAITNLAMIIEYAYKVN--PS 106 (331)
T ss_dssp TCCCCCSCCCEEEC-SSSCEEEEECCSCSSSCCCSHHHHHHHTTCSEEEEECCCSSCTTHHHHHHHHHHHHHHHHC--TT
T ss_pred eecCeeeeeeEEEc-cEEEEEEEECCCchhccchhhhhhhhccCCCEEEEEEECCchHHHHHHHHHHHHHHHhhcC--CC
Confidence 57899999988773 468999999999999963 468899999999999999987 33333444444444332 57
Q ss_pred CcEEEEEeCCCCCCC---------CCHHHHHhHcCccccCCcceEEEEeeecCCCCHHHHHHHHHHHHHhc
Q 029517 114 APLLILANKQDLPDA---------VSADELARYLDLKKLDERVCMFEAVSGYDGFGIKESVEWLVEVMERS 175 (192)
Q Consensus 114 ~piiiv~nK~Dl~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~e~~~~i~~~i~~~ 175 (192)
+|+++++||+|+... +..++..++++. .....++.|++|||++ .||.++|..+++.+...
T Consensus 107 ipillvgNK~DL~~~~~R~~~~R~V~~~~~~~la~~-~~~~~~i~f~eTSAkd-~nV~eAFs~iv~~li~~ 175 (331)
T 3r7w_B 107 INIEVLIHKVDGLSEDFKVDAQRDIMQRTGEELLEL-GLDGVQVSFYLTSIFD-HSIYEAFSRIVQKLIPE 175 (331)
T ss_dssp CEEEEECCCCCSSCSHHHHHHHHHHHHHHHHTTSSS-SCSCCCEEEECCCSSS-SHHHHHHHHHHTTSSTT
T ss_pred CcEEEEEECcccCchhhhhhHHHHhhHHHHHHHHhh-cccccCceEEEeccCC-CcHHHHHHHHHHHHHhh
Confidence 999999999999753 222333444441 0112579999999998 69999999999876644
No 97
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=99.87 E-value=1.7e-22 Score=149.24 Aligned_cols=133 Identities=17% Similarity=0.283 Sum_probs=103.8
Q ss_pred CCCCCCCCCCcceEEEE---EEecCEEEEEEeCCCCcccHHHHHHhhhcCCEEEEEEeCCCcccHHHHH-HHHHHHHhCC
Q 029517 34 GLPPDRIVPTVGLNIGR---IEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSK-TALEKVLRNE 109 (192)
Q Consensus 34 ~~~~~~~~~T~g~~~~~---~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ii~v~D~~~~~s~~~~~-~~~~~i~~~~ 109 (192)
+.+...+.||.+..+.. ++...+.+.+|||||++++...+..+++++|++++|+|++++.+++.+. .|+..+....
T Consensus 53 ~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~ 132 (204)
T 4gzl_A 53 NAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGLEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHC 132 (204)
T ss_dssp SCCCC-CCCCSEEEEEEEEECC-CEEEEEEEEECCSGGGTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHC
T ss_pred CCCCCCcCCeecceeEEEEEECCEEEEEEEEECCCchhhHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHHhC
Confidence 55566678888766553 3344678889999999999999989999999999999999999999987 7877776654
Q ss_pred CCCCCcEEEEEeCCCCCCC--------------CCHHHHHhHcCccccCCcceEEEEeeecCCCCHHHHHHHHHHHH
Q 029517 110 DLQGAPLLILANKQDLPDA--------------VSADELARYLDLKKLDERVCMFEAVSGYDGFGIKESVEWLVEVM 172 (192)
Q Consensus 110 ~~~~~piiiv~nK~Dl~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~e~~~~i~~~i 172 (192)
.+.|+++|+||+|+... +..++..+++. .....+++++||++|.||+++|++|.+.+
T Consensus 133 --~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~----~~~~~~~~~~SA~~g~gi~~l~~~l~~~~ 203 (204)
T 4gzl_A 133 --PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAK----EIGAVKYLECSALTQRGLKTVFDEAIRAV 203 (204)
T ss_dssp --SSCCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHH----HTTCSEEEECCTTTCTTHHHHHHHHHHTT
T ss_pred --CCCCEEEEEechhhccchhhhhhhhccccccccHHHHHHHHH----hcCCcEEEEeeCCCCCCHHHHHHHHHHHh
Confidence 57999999999998653 44445555544 11234699999999999999999998753
No 98
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=99.87 E-value=5.2e-23 Score=149.60 Aligned_cols=149 Identities=14% Similarity=0.189 Sum_probs=104.7
Q ss_pred ccccHHHHHHHHhhhhccCCCCCCCCCCCCcceEEEEEE-------ecCEEEEEEeCCCCcccHHHHHHhhhcCCEEEEE
Q 029517 14 TKTEFHTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIE-------VSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFV 86 (192)
Q Consensus 14 kst~~~~l~~~~~~~~~~~~~~~~~~~~~T~g~~~~~~~-------~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ii~v 86 (192)
|||++|+|.+.. ..+...+.||+|.++.... ...+.+.+|||+|+++|...+..++++++++++|
T Consensus 15 KStLl~~l~~~~--------~~~~~~~~~t~g~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v 86 (184)
T 2zej_A 15 KTTLLQQLMKTK--------KSDLGMQSATVGIDVKDWPIQIRDKRKRDLVLNVWDFAGREEFYSTHPHFMTQRALYLAV 86 (184)
T ss_dssp HHHHHHHHTCC-------------------CSEEEEEEEC---------CEEEEEEECSHHHHHTTSHHHHHHSEEEEEE
T ss_pred HHHHHHHHhcCC--------CccCCCcceeccEEeEEeeeccccCCCCceEEEEEecCCCHHHHHhhHHHccCCcEEEEE
Confidence 677777765421 1234557889998876543 2467899999999999988888999999999999
Q ss_pred EeCCCc-ccHHHHHHHHHHHHhCCCCCCCcEEEEEeCCCCCCCCCH-----HHHHhHcCccccCCcce----EEEEeeec
Q 029517 87 IDAACP-SRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAVSA-----DELARYLDLKKLDERVC----MFEAVSGY 156 (192)
Q Consensus 87 ~D~~~~-~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~~~~~-----~~~~~~~~~~~~~~~~~----~~~~~Sa~ 156 (192)
+|++++ .+++.+..|+..+.... .+.|+++|+||+|+.+.... +...+++. ..++ .++++||+
T Consensus 87 ~d~~~~~~s~~~~~~~~~~~~~~~--~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~Sa~ 159 (184)
T 2zej_A 87 YDLSKGQAEVDAMKPWLFNIKARA--SSSPVILVGTHLDVSDEKQRKACMSKITKELLN-----KRGFPAIRDYHFVNAT 159 (184)
T ss_dssp EEGGGCHHHHHTHHHHHHHHHHHC--TTCEEEEEEECGGGCCHHHHHHHHHHHHHHTTT-----CTTSCEEEEEEECCTT
T ss_pred EeCCcchhHHHHHHHHHHHHHhhC--CCCcEEEEEECCCcccchhhHHHHHHHHHHHHH-----hcCCcchhheEEEecc
Confidence 999987 57899999999887653 47899999999998752111 22233333 3344 39999999
Q ss_pred CCC-CHHHHHHHHHHHHHhcch
Q 029517 157 DGF-GIKESVEWLVEVMERSKR 177 (192)
Q Consensus 157 ~~~-gi~e~~~~i~~~i~~~~~ 177 (192)
+|. |++++++.|.+.+.+.+.
T Consensus 160 ~~~~~~~~l~~~i~~~~~~~~~ 181 (184)
T 2zej_A 160 EESDALAKLRKTIINESLNFKI 181 (184)
T ss_dssp SCCHHHHHHHHHHHHHHHCC--
T ss_pred cCchhHHHHHHHHHHHHhcccc
Confidence 997 999999999988876553
No 99
>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}
Probab=99.87 E-value=2.5e-24 Score=158.35 Aligned_cols=145 Identities=22% Similarity=0.367 Sum_probs=105.3
Q ss_pred ccccHHHHHHHHhhhhccCCCCCCCCCCCCcceEEE--EEEec--CEEEEEEeCCCCcccHHHHHHhhhcCCEEEEEEeC
Q 029517 14 TKTEFHTLLEKLKSVYSNVEGLPPDRIVPTVGLNIG--RIEVS--NSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDA 89 (192)
Q Consensus 14 kst~~~~l~~~~~~~~~~~~~~~~~~~~~T~g~~~~--~~~~~--~~~~~i~D~~G~~~~~~~~~~~~~~~d~ii~v~D~ 89 (192)
|||++|+|++ +.+...+.||++.++. .+... .+.+.+|||||++.+...+..+++++|++++|+|+
T Consensus 46 KSsli~~l~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~ 115 (199)
T 3l0i_B 46 KSCLLLRFAD----------DTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDV 115 (199)
T ss_dssp CTTTTTSSBC----------CCCCCHHHHHHCCSEEEEEEEETTEEEEEEEECCTTCTTCCCCSCC--CCCSEEEECC-C
T ss_pred HHHHHHHHhc----------CCCCCCcCCcccceEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHhhcCCEEEEEEEC
Confidence 7777777642 4455566777775554 34443 47899999999999988888899999999999999
Q ss_pred CCcccHHHHHHHHHHHHhCCCCCCCcEEEEEeCCCCCC--CCCHHHHHhHcCccccCCcceEEEEeeecCCCCHHHHHHH
Q 029517 90 ACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPD--AVSADELARYLDLKKLDERVCMFEAVSGYDGFGIKESVEW 167 (192)
Q Consensus 90 ~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~e~~~~ 167 (192)
++..+++.+..|+..+..... .+.|+++|+||+|+.+ .+..+++.+++. ..+++++++||++|.||+++|++
T Consensus 116 ~~~~s~~~~~~~~~~i~~~~~-~~~p~ilv~nK~Dl~~~~~v~~~~~~~~~~-----~~~~~~~~vSA~~g~gv~~l~~~ 189 (199)
T 3l0i_B 116 TDQESFNNVKQWLQEIDRYAS-ENVNKLLVGNKCDLTTKKVVDYTTAKEFAD-----SLGIPFLETSAKNATNVEQSFMT 189 (199)
T ss_dssp CCSHHHHHHHHHHHHHHSCC--CCSEEEEC-CCSSCC--CCCCSCC-CHHHH-----TTTCCBCCCCC---HHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHhcc-CCCCEEEEEECccCCccccCCHHHHHHHHH-----HcCCeEEEEECCCCCCHHHHHHH
Confidence 999999999999998876543 4799999999999965 233334444443 44678999999999999999999
Q ss_pred HHHHHHh
Q 029517 168 LVEVMER 174 (192)
Q Consensus 168 i~~~i~~ 174 (192)
|.+.+.+
T Consensus 190 l~~~l~~ 196 (199)
T 3l0i_B 190 MAAEIKK 196 (199)
T ss_dssp HTTTTTT
T ss_pred HHHHHHH
Confidence 9876654
No 100
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}
Probab=99.78 E-value=1.1e-23 Score=155.38 Aligned_cols=142 Identities=17% Similarity=0.263 Sum_probs=106.3
Q ss_pred ccccHHHHHHHHhhhhccCCCCCCCCCCCCcceEEE---EEEecCEEEEEEeCCCCcccHHHHHHhhhcCCEEEEEEeCC
Q 029517 14 TKTEFHTLLEKLKSVYSNVEGLPPDRIVPTVGLNIG---RIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAA 90 (192)
Q Consensus 14 kst~~~~l~~~~~~~~~~~~~~~~~~~~~T~g~~~~---~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ii~v~D~~ 90 (192)
|||++++|++ +.+...+.||++..+. .+++..+.+++|||||++++...+..+++++|++++|+|++
T Consensus 43 KSsli~~l~~----------~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~iilv~D~~ 112 (204)
T 3th5_A 43 KTCLLISYTT----------NAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLV 112 (204)
Confidence 6666666653 2334455666665443 23445678899999999999999999999999999999999
Q ss_pred CcccHHHHH-HHHHHHHhCCCCCCCcEEEEEeCCCCCCC--------------CCHHHHHhHcCccccCCcce-EEEEee
Q 029517 91 CPSRFEDSK-TALEKVLRNEDLQGAPLLILANKQDLPDA--------------VSADELARYLDLKKLDERVC-MFEAVS 154 (192)
Q Consensus 91 ~~~s~~~~~-~~~~~i~~~~~~~~~piiiv~nK~Dl~~~--------------~~~~~~~~~~~~~~~~~~~~-~~~~~S 154 (192)
++.+++.+. .|+..+.... .++|+++|+||+|+.+. +..+++.+++. ..+. +++++|
T Consensus 113 ~~~s~~~~~~~~~~~l~~~~--~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~-----~~~~~~~~~vS 185 (204)
T 3th5_A 113 SPASFENVRAKWYPEVRHHC--PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAK-----EIGAVKYLECS 185 (204)
Confidence 999999887 6776665543 37899999999999652 22233333333 3345 899999
Q ss_pred ecCCCCHHHHHHHHHHHH
Q 029517 155 GYDGFGIKESVEWLVEVM 172 (192)
Q Consensus 155 a~~~~gi~e~~~~i~~~i 172 (192)
|++|.||+++|++|.+.+
T Consensus 186 A~~g~gi~~l~~~l~~~i 203 (204)
T 3th5_A 186 ALTQRGLKTVFDEAIRAV 203 (204)
Confidence 999999999999998764
No 101
>3ohm_A Guanine nucleotide-binding protein G(Q) subunit A; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Mus musculus} PDB: 2bcj_Q* 2rgn_A* 3ah8_A*
Probab=99.86 E-value=1.4e-21 Score=153.55 Aligned_cols=136 Identities=18% Similarity=0.312 Sum_probs=115.0
Q ss_pred CCCCcceEEEEEEecCEEEEEEeCCCCcccHHHHHHhhhcCCEEEEEEeC----------CCcccHHHHHHHHHHHHhCC
Q 029517 40 IVPTVGLNIGRIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDA----------ACPSRFEDSKTALEKVLRNE 109 (192)
Q Consensus 40 ~~~T~g~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ii~v~D~----------~~~~s~~~~~~~~~~i~~~~ 109 (192)
..||+|+....+..+++++++|||+|+++++..|..|+++++++|+|+|+ ++.+++.+...|+..+....
T Consensus 151 r~~TiGi~~~~~~~~~v~l~iwDtgGQe~~R~~w~~yf~~~~~iIfV~dls~ydq~l~d~~~~nr~~es~~~~~~i~~~~ 230 (327)
T 3ohm_A 151 RVPTTGIIEYPFDLQSVIFRMVDVGGQRSERRKWIHCFENVTSIMFLVALSEYDQVLVESDNENRMEESKALFRTIITYP 230 (327)
T ss_dssp CCCCCSEEEEEEEETTEEEEEEEECCSHHHHTTGGGGCSSCSEEEEEEEGGGGGCBCSSCTTSBHHHHHHHHHHHHHTSG
T ss_pred cCceeeEEEEEEEeeceeeEEEEcCCchhHHHHHHHHhCCCCEEEEEEECccccccccccccHhHHHHHHHHHHHHhhhh
Confidence 68899999999999999999999999999999999999999999999955 47788999999999998776
Q ss_pred CCCCCcEEEEEeCCCCCC------------------CCCHHHHHhHcC-----ccccCCcceEEEEeeecCCCCHHHHHH
Q 029517 110 DLQGAPLLILANKQDLPD------------------AVSADELARYLD-----LKKLDERVCMFEAVSGYDGFGIKESVE 166 (192)
Q Consensus 110 ~~~~~piiiv~nK~Dl~~------------------~~~~~~~~~~~~-----~~~~~~~~~~~~~~Sa~~~~gi~e~~~ 166 (192)
...+.|+++++||+|+.+ .++.+++.+++. +.....+++.+++|||+++.||+++|+
T Consensus 231 ~~~~~~iiL~~NK~DL~~~ki~~~~l~~~fp~y~g~~~~~e~a~~fi~~~F~~~~~~~~~~i~~~~TsA~d~~nV~~vF~ 310 (327)
T 3ohm_A 231 WFQNSSVILFLNKKDLLEEKIMYSHLVDYFPEYDGPQRDAQAAREFILKMFVDLNPDSDKIIYSHFTCATDTENIRFVFA 310 (327)
T ss_dssp GGTTCEEEEEEECHHHHHHHTTTSCGGGTCTTCCSCSSCHHHHHHHHHHHHHSSCTTTTSCEEEEECCTTCHHHHHHHHH
T ss_pred ccCCceEEEEEECchhhhhhhccchHhhhchhccCCCCCHHHHHHHHHHHHHhhcccccCCcEEEEEEeecCHHHHHHHH
Confidence 557899999999999843 356677776642 111224678899999999999999999
Q ss_pred HHHHHHHhc
Q 029517 167 WLVEVMERS 175 (192)
Q Consensus 167 ~i~~~i~~~ 175 (192)
.+.+.+.+.
T Consensus 311 ~v~~~Il~~ 319 (327)
T 3ohm_A 311 AVKDTILQL 319 (327)
T ss_dssp HHHHHHHHT
T ss_pred HHHHHHHHH
Confidence 999988764
No 102
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=99.86 E-value=4.1e-22 Score=146.25 Aligned_cols=116 Identities=20% Similarity=0.237 Sum_probs=88.4
Q ss_pred ecCEEEEEEeCCCCcccHHHH---HHhhhcCCEEEEEEeCCCc--ccHHHHHHHHHHHHhCCCCCCCcEEEEEeCCCCCC
Q 029517 53 VSNSKLVFWDLGGQPGLRSIW---EKYYEEAHAVVFVIDAACP--SRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPD 127 (192)
Q Consensus 53 ~~~~~~~i~D~~G~~~~~~~~---~~~~~~~d~ii~v~D~~~~--~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~ 127 (192)
+..+.+++|||||+++|.... ..+++++|++|+|||+++. +++..+..|+..+.... .+.|+++|+||+|+..
T Consensus 66 ~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~l~~~~~~~--~~~piilv~nK~Dl~~ 143 (196)
T 3llu_A 66 SSFVNFQIWDFPGQMDFFDPTFDYEMIFRGTGALIYVIDAQDDYMEALTRLHITVSKAYKVN--PDMNFEVFIHKVDGLS 143 (196)
T ss_dssp TTSCCEEEEECCSSCCTTCTTCCHHHHHHTCSEEEEEEETTSCCHHHHHHHHHHHHHHHHHC--TTCEEEEEEECGGGSC
T ss_pred CCeeEEEEEECCCCHHHHhhhhhcccccccCCEEEEEEECCCchHHHHHHHHHHHHHHHhcC--CCCcEEEEEeccccCc
Confidence 456899999999999987765 8899999999999999987 66777777777765432 5799999999999864
Q ss_pred C---------CCHHHHHhHcCccccCCcceEEEEeeecCCCCHHHHHHHHHHHH
Q 029517 128 A---------VSADELARYLDLKKLDERVCMFEAVSGYDGFGIKESVEWLVEVM 172 (192)
Q Consensus 128 ~---------~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~e~~~~i~~~i 172 (192)
. +..++..+++. ......+++++++||++ .||+++|+++++.+
T Consensus 144 ~~~~~~~~~~v~~~~~~~~~~-~~~~~~~~~~~e~Sa~~-~~v~~~f~~l~~~l 195 (196)
T 3llu_A 144 DDHKIETQRDIHQRANDDLAD-AGLEKLHLSFYLTSIYD-HSIFEAFSKVVQKL 195 (196)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH-TTCTTSCEEEEEECTTS-THHHHHHHHHHHHT
T ss_pred hhhhhHHHhHHHHHHHHHHHH-hhhhcCCcceEEEEech-hhHHHHHHHHHHHh
Confidence 1 11122222222 11114578999999999 99999999998864
No 103
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=99.85 E-value=2.9e-20 Score=137.89 Aligned_cols=147 Identities=28% Similarity=0.356 Sum_probs=100.3
Q ss_pred ccccHHHHHHHHhhhhccCCCCCCCCCCCCcceEEEEEEec---CEEEEEEeCCCCcccHH-HHHHhhhcCCEEEEEEeC
Q 029517 14 TKTEFHTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVS---NSKLVFWDLGGQPGLRS-IWEKYYEEAHAVVFVIDA 89 (192)
Q Consensus 14 kst~~~~l~~~~~~~~~~~~~~~~~~~~~T~g~~~~~~~~~---~~~~~i~D~~G~~~~~~-~~~~~~~~~d~ii~v~D~ 89 (192)
|||++++|++. .+...+. |++.++..+... .+.+++|||||++++.. .+..+++.+|++++|+|+
T Consensus 20 KTsli~~l~~~----------~~~~~~~-~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~i~v~d~ 88 (214)
T 2fh5_B 20 KTLLFVRLLTG----------QYRDTQT-SITDSSAIYKVNNNRGNSLTLIDLPGHESLRFQLLDRFKSSARAVVFVVDS 88 (214)
T ss_dssp HHHHHHHHHHS----------CCCCBCC-CCSCEEEEEECSSTTCCEEEEEECCCCHHHHHHHHHHHGGGEEEEEEEEET
T ss_pred HHHHHHHHhCC----------CcccccC-CcceeeEEEEecCCCccEEEEEECCCChhHHHHHHHHHHhhCCEEEEEEEC
Confidence 56666666543 3445544 444555556554 68999999999999988 788899999999999999
Q ss_pred CCcc-cHHHHHHHHHHHHhC--CCCCCCcEEEEEeCCCCCCCCCHHHHHhHcCc-----------------------ccc
Q 029517 90 ACPS-RFEDSKTALEKVLRN--EDLQGAPLLILANKQDLPDAVSADELARYLDL-----------------------KKL 143 (192)
Q Consensus 90 ~~~~-s~~~~~~~~~~i~~~--~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~-----------------------~~~ 143 (192)
++.. ++..+..++..+... ....++|+++|+||+|+......+++.+.+.. ...
T Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~~s~~~~~~~~~~~~ 168 (214)
T 2fh5_B 89 AAFQREVKDVAEFLYQVLIDSMALKNSPSLLIACNKQDIAMAKSAKLIQQQLEKELNTLRVTRSAAPSTLDSSSTAPAQL 168 (214)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHTSTTCCEEEEEEECTTSTTCCCHHHHHHHHHHHHHHHHHHCC------------CCCS
T ss_pred CCcCHHHHHHHHHHHHHHhhhhhcccCCCEEEEEECCCCCCcccHHHHHHHHHHHHHHHhccchhccccccCCccccccc
Confidence 8743 455555555554332 11247899999999999875444433322210 000
Q ss_pred C---------C--cceEEEEeeecCC------CCHHHHHHHHHHH
Q 029517 144 D---------E--RVCMFEAVSGYDG------FGIKESVEWLVEV 171 (192)
Q Consensus 144 ~---------~--~~~~~~~~Sa~~~------~gi~e~~~~i~~~ 171 (192)
. . .+++|++|||++| .||+++|++|.+.
T Consensus 169 ~~~~~~~~~~~~~~~~~~~e~SAk~g~~~~~~~gv~~lf~~l~~~ 213 (214)
T 2fh5_B 169 GKKGKEFEFSQLPLKVEFLECSAKGGRGDTGSADIQDLEKWLAKI 213 (214)
T ss_dssp SCTTSCCCGGGSSSCEEEEECBCC-------CCBCHHHHHHHHHH
T ss_pred cCCCCCcccccCCCcEEEEEeeccCCCccccccChHHHHHHHHHh
Confidence 0 1 1788999999999 9999999999875
No 104
>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*
Probab=99.85 E-value=2.5e-21 Score=154.50 Aligned_cols=136 Identities=17% Similarity=0.345 Sum_probs=107.1
Q ss_pred CCCCcceEEEEEEecCEEEEEEeCCCCcccHHHHHHhhhcCCEEEEEEeCCC----------cccHHHHHHHHHHHHhCC
Q 029517 40 IVPTVGLNIGRIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAAC----------PSRFEDSKTALEKVLRNE 109 (192)
Q Consensus 40 ~~~T~g~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ii~v~D~~~----------~~s~~~~~~~~~~i~~~~ 109 (192)
+.||+|+....+..+++++.+|||+|++.++..|..|+++++++|+|+|+++ ..++.++..|+..+....
T Consensus 185 r~~T~Gi~~~~~~~~~~~l~i~Dt~Gq~~~r~~w~~~f~~~~~iIfv~dls~~dq~l~ed~~~n~~~es~~~~~~i~~~~ 264 (362)
T 1zcb_A 185 RRPTKGIHEYDFEIKNVPFKMVDVGGQRSERKRWFECFDSVTSILFLVSSSEFDQVLMEDRQTNRLTESLNIFETIVNNR 264 (362)
T ss_dssp CCCCSSEEEEEEEETTEEEEEEEECC-------CTTSCTTCCEEEEEEETTCTTCEETTEEEEEHHHHHHHHHHHHHTCG
T ss_pred cCCccceEEEEeeeCCeEEEEEeccchhhhhhhHHHHhCCCCEEEEEEECccccccccccccccHHHHHHHHHHHHhcch
Confidence 4678999988898889999999999999999999999999999999999998 789999999999998765
Q ss_pred CCCCCcEEEEEeCCCCCC------------------CCCHHHHHhHc-----CccccC-CcceEEEEeeecCCCCHHHHH
Q 029517 110 DLQGAPLLILANKQDLPD------------------AVSADELARYL-----DLKKLD-ERVCMFEAVSGYDGFGIKESV 165 (192)
Q Consensus 110 ~~~~~piiiv~nK~Dl~~------------------~~~~~~~~~~~-----~~~~~~-~~~~~~~~~Sa~~~~gi~e~~ 165 (192)
...+.|+++++||+|+.+ .++.+++.+++ .+.... ..++.+++|||+++.||+++|
T Consensus 265 ~~~~~piILv~NK~DL~~~ki~~~~l~~~fp~y~g~~~~~~e~~~~~~~~f~~l~~~~~~~~~~~~~tSA~d~~nV~~vF 344 (362)
T 1zcb_A 265 VFSNVSIILFLNKTDLLEEKVQVVSIKDYFLEFEGDPHCLRDVQKFLVECFRGKRRDQQQRPLYHHFTTAINTENIRLVF 344 (362)
T ss_dssp GGTTSEEEEEEECHHHHHHHTTTCCGGGTCTTCCSCTTCHHHHHHHHHHHHHTTCSSCC--CCEEEECCTTCHHHHHHHH
T ss_pred hhCCCCEEEEEEChhhhhhhccccchhhcCccccCCCCCHHHHHHHHHHHHHHhhcccCCCceEEEEEecCCchhHHHHH
Confidence 556899999999999852 25677777765 221111 346789999999999999999
Q ss_pred HHHHHHHHhc
Q 029517 166 EWLVEVMERS 175 (192)
Q Consensus 166 ~~i~~~i~~~ 175 (192)
+++.+.+.+.
T Consensus 345 ~~v~~~i~~~ 354 (362)
T 1zcb_A 345 RDVKDTILHD 354 (362)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999987643
No 105
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*
Probab=99.84 E-value=2.8e-21 Score=151.39 Aligned_cols=148 Identities=15% Similarity=0.194 Sum_probs=111.5
Q ss_pred hccccHHHHHHHHhhhhccCCCCCCCCCCCCcceEEEEEEe-cCEEEEEEeCCCCccc-----HHHHHHhhhcCCEEEEE
Q 029517 13 FTKTEFHTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEV-SNSKLVFWDLGGQPGL-----RSIWEKYYEEAHAVVFV 86 (192)
Q Consensus 13 ~kst~~~~l~~~~~~~~~~~~~~~~~~~~~T~g~~~~~~~~-~~~~~~i~D~~G~~~~-----~~~~~~~~~~~d~ii~v 86 (192)
=|||++|+|++.... .....+.+|++..+..+.. +.+.+.+|||||++++ ...+..+++++|++|+|
T Consensus 15 GKSSLi~~l~~~~~~-------~~~~~~~~Ti~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~~ad~vi~V 87 (307)
T 3r7w_A 15 GKSSMRSIIFSNYSA-------FDTRRLGATIDVEHSHLRFLGNMTLNLWDCGGQDVFMENYFTKQKDHIFQMVQVLIHV 87 (307)
T ss_dssp SHHHHHHHHHSCCCT-------GGGGGCCCCCSEEEEEEEETTTEEEEEEEECCSHHHHHHHHTTTHHHHHTTCSEEEEE
T ss_pred CHHHHHHHHHhCCCC-------ccccCcCCccceEEEEEEeCCceEEEEEECCCcHHHhhhhhhhHHHHHhccCCEEEEE
Confidence 377777777654211 1123678999999988774 5789999999999988 56778889999999999
Q ss_pred EeCCCcccHHHHHHHHHHHHhCC-CCCCCcEEEEEeCCCCCCC--------CCHHHHHhHcCccccCCc---ceEEEEee
Q 029517 87 IDAACPSRFEDSKTALEKVLRNE-DLQGAPLLILANKQDLPDA--------VSADELARYLDLKKLDER---VCMFEAVS 154 (192)
Q Consensus 87 ~D~~~~~s~~~~~~~~~~i~~~~-~~~~~piiiv~nK~Dl~~~--------~~~~~~~~~~~~~~~~~~---~~~~~~~S 154 (192)
+|++++.+++.+..|...+.... ...++|+++|+||+|+.+. ...+++.+++. .. ..+++++|
T Consensus 88 ~D~t~~~s~~~l~~~~~~l~~l~~~~~~~piilv~NK~Dl~~~~~r~~~~~v~~~~~~~~~~-----~~g~~~~~~~~tS 162 (307)
T 3r7w_A 88 FDVESTEVLKDIEIFAKALKQLRKYSPDAKIFVLLHKMDLVQLDKREELFQIMMKNLSETSS-----EFGFPNLIGFPTS 162 (307)
T ss_dssp EETTCSCHHHHHHHHHHHHHHHHHHCTTCEEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHH-----TTTCCSCEEEECC
T ss_pred EECCChhhHHHHHHHHHHHHHHHHhCCCCeEEEEEecccccchhhhhHHHHHHHHHHHHHHH-----HcCCCCeEEEEee
Confidence 99999999998877654443321 0157999999999999751 22345555554 33 37999999
Q ss_pred ecCCCCHHHHHHHHHHHHH
Q 029517 155 GYDGFGIKESVEWLVEVME 173 (192)
Q Consensus 155 a~~~~gi~e~~~~i~~~i~ 173 (192)
|++ .|+.++|.++++.+.
T Consensus 163 a~~-~~i~e~~~~iv~~li 180 (307)
T 3r7w_A 163 IWD-ESLYKAWSQIVCSLI 180 (307)
T ss_dssp TTS-SHHHHHHHHHHHTTC
T ss_pred ecC-ChHHHHHHHHHHHHc
Confidence 999 899999999987554
No 106
>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*
Probab=99.84 E-value=8.2e-21 Score=149.52 Aligned_cols=142 Identities=17% Similarity=0.245 Sum_probs=111.0
Q ss_pred HHHHHHhhhhccCCCCCCCCCCCCcceEEEE-EE--ecCEEEEEEeCCCCcccHHHHHHhhhcCCEEEEEEeCCCcccHH
Q 029517 20 TLLEKLKSVYSNVEGLPPDRIVPTVGLNIGR-IE--VSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFE 96 (192)
Q Consensus 20 ~l~~~~~~~~~~~~~~~~~~~~~T~g~~~~~-~~--~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ii~v~D~~~~~s~~ 96 (192)
+|++++.. +.+...+.||++..+.. +. +..+.+.+|||||++.+...+..+++++|++++|+|++++.+++
T Consensus 170 sli~~~~~------~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~ 243 (332)
T 2wkq_A 170 CLLISYTT------NAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGLEDYDRLRPLSYPQTDVFLICFSLVSPASFH 243 (332)
T ss_dssp HHHHHHHH------SCCCCSCCCCSEEEEEEEEEETTEEEEEEEEEECCCGGGTTTGGGGCTTCSEEEEEEETTCHHHHH
T ss_pred HHHHHHHh------CCCCcccCCcccceeEEEEEECCEEEEEEEEeCCCchhhhHHHHHhccCCCEEEEEEeCCCHHHHH
Confidence 44555554 45566778888876653 33 33567889999999999888888999999999999999999999
Q ss_pred HHH-HHHHHHHhCCCCCCCcEEEEEeCCCCCC--------------CCCHHHHHhHcCccccCCcce-EEEEeeecCCCC
Q 029517 97 DSK-TALEKVLRNEDLQGAPLLILANKQDLPD--------------AVSADELARYLDLKKLDERVC-MFEAVSGYDGFG 160 (192)
Q Consensus 97 ~~~-~~~~~i~~~~~~~~~piiiv~nK~Dl~~--------------~~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~g 160 (192)
.+. .|+..+.... .++|+++|+||+|+.. .+..+++.+++. ..+. +++++||++|.|
T Consensus 244 ~~~~~~~~~~~~~~--~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~-----~~~~~~~~~~Sa~~~~g 316 (332)
T 2wkq_A 244 HVRAKWYPEVRHHC--PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAK-----EIGAVKYLECSALTQRG 316 (332)
T ss_dssp HHHHTHHHHHHHHC--TTSCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHH-----HTTCSEEEECCTTTCTT
T ss_pred HHHHHHHHHHHhhC--CCCcEEEEEEchhcccccchhhhccccccccccHHHHHHHHH-----HcCCcEEEEecCCCCcC
Confidence 887 6777776653 3799999999999853 344555555554 3344 899999999999
Q ss_pred HHHHHHHHHHHHHh
Q 029517 161 IKESVEWLVEVMER 174 (192)
Q Consensus 161 i~e~~~~i~~~i~~ 174 (192)
|+++|++|.+.+.+
T Consensus 317 i~~l~~~l~~~~~~ 330 (332)
T 2wkq_A 317 LKTVFDEAIRAVLC 330 (332)
T ss_dssp HHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhc
Confidence 99999999988764
No 107
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=99.84 E-value=4.2e-20 Score=138.62 Aligned_cols=154 Identities=16% Similarity=0.174 Sum_probs=102.1
Q ss_pred ccccHHHHHHHHhhhhccCCCCCCCCCCCCcceEEEEEEecCEEEEEEeCCCC------ccc---HHHHHHhhhcCCEEE
Q 029517 14 TKTEFHTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQ------PGL---RSIWEKYYEEAHAVV 84 (192)
Q Consensus 14 kst~~~~l~~~~~~~~~~~~~~~~~~~~~T~g~~~~~~~~~~~~~~i~D~~G~------~~~---~~~~~~~~~~~d~ii 84 (192)
|||++|+|++.... ..+ ....|.......+......+.+|||||+ +.. ...+..++..+|++|
T Consensus 42 KSsLin~l~~~~~~----~~~----~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~d~~i 113 (228)
T 2qu8_A 42 KSSFMNIVSRANVD----VQS----YSFTTKNLYVGHFDHKLNKYQIIDTPGLLDRAFENRNTIEMTTITALAHINGVIL 113 (228)
T ss_dssp HHHHHHHHTTTCEE----EEC----C-----CEEEEEEEETTEEEEEEECTTTTTSCGGGCCHHHHHHHHHHHTSSEEEE
T ss_pred HHHHHHHHhCCCCc----cCC----CCCcceeeeeeeeecCCCeEEEEECCCCcCcccchhhhHHHHHHHHhhccccEEE
Confidence 67777777643211 111 1123455555566667889999999998 442 123345678899999
Q ss_pred EEEeCCCcccHH--HHHHHHHHHHhCCCCCCCcEEEEEeCCCCCC--CCCHH---HHHhHcCccccCCcc--eEEEEeee
Q 029517 85 FVIDAACPSRFE--DSKTALEKVLRNEDLQGAPLLILANKQDLPD--AVSAD---ELARYLDLKKLDERV--CMFEAVSG 155 (192)
Q Consensus 85 ~v~D~~~~~s~~--~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~--~~~~~---~~~~~~~~~~~~~~~--~~~~~~Sa 155 (192)
+|+|++++.+++ ....|+..+.... .+.|+++|+||+|+.. .+..+ .+.+++. ..+ .+++++||
T Consensus 114 ~v~d~~~~~s~~~~~~~~~~~~l~~~~--~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~SA 186 (228)
T 2qu8_A 114 FIIDISEQCGLTIKEQINLFYSIKSVF--SNKSIVIGFNKIDKCNMDSLSIDNKLLIKQILD-----NVKNPIKFSSFST 186 (228)
T ss_dssp EEEETTCTTSSCHHHHHHHHHHHHTCC---CCCEEEEEECGGGCC--CCCHHHHHHHHHHHH-----HCCSCEEEEECCT
T ss_pred EEEecccccCcchHHHHHHHHHHHHhh--cCCcEEEEEeCcccCCchhhHHHHHHHHHHHHH-----hcCCCceEEEEec
Confidence 999999887764 3345666665442 4799999999999975 33332 2333333 233 79999999
Q ss_pred cCCCCHHHHHHHHHHHHHhcchhhhhh
Q 029517 156 YDGFGIKESVEWLVEVMERSKRTEMLR 182 (192)
Q Consensus 156 ~~~~gi~e~~~~i~~~i~~~~~~~~~~ 182 (192)
++|.||+++|++|.+.+.+.+.....+
T Consensus 187 ~~g~gi~~l~~~l~~~i~~~~~~~~~~ 213 (228)
T 2qu8_A 187 LTGVGVEQAKITACELLKNDQAESILL 213 (228)
T ss_dssp TTCTTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccCCCHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999887765444333
No 108
>4fid_A G protein alpha subunit; RAS-like domain, all-helical domain, GTP binding, nucleotide signaling protein, transducer, lipoprotein; HET: MLY MSE GDP; 2.62A {Entamoeba histolytica}
Probab=99.83 E-value=1.4e-20 Score=148.41 Aligned_cols=135 Identities=26% Similarity=0.359 Sum_probs=112.8
Q ss_pred CCCCcceEEEEEEecCEEEEEEeCCCCcccHHHHHHhhhcCCEEEEEEeCC----------CcccHHHHHHHHHHHHhCC
Q 029517 40 IVPTVGLNIGRIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAA----------CPSRFEDSKTALEKVLRNE 109 (192)
Q Consensus 40 ~~~T~g~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ii~v~D~~----------~~~s~~~~~~~~~~i~~~~ 109 (192)
+.||+|+....+..+++++++|||+|+++++..|..|+++++++|+|+|++ +.+++.+...|+..+....
T Consensus 145 ~~~TiGi~~~~~~~~~v~l~iwDtaGQe~~R~~w~~yy~~a~~iIfV~diS~ydq~l~e~~~~nr~~es~~~~~~i~~~~ 224 (340)
T 4fid_A 145 RTKTTGIHEYDFVVKDIPFHLIDVGGQRSERKXWVSFFSDVDCAIFVTSLAEYDMKLYEDGNTSRLTESIAVFKDIMTNE 224 (340)
T ss_dssp CCCCCSCEEEEEESSSCEEEEEECCSCHHHHHHHHTTSCSCSEEEEEEEGGGTTCBCC--CCSBHHHHHHHHHHHHHHCG
T ss_pred ccceeeeEEEEEEeeeeeeccccCCCcccccccHHHHhccCCEEEEEEECCccccccccccccchHHHHHHHHHHHhhhh
Confidence 688999999999999999999999999999999999999999999999998 7889999999999998876
Q ss_pred CCCCCcEEEEEeCCCCCC-----------------CCCHHHHHhHcCccc-----------cCC-----------cceEE
Q 029517 110 DLQGAPLLILANKQDLPD-----------------AVSADELARYLDLKK-----------LDE-----------RVCMF 150 (192)
Q Consensus 110 ~~~~~piiiv~nK~Dl~~-----------------~~~~~~~~~~~~~~~-----------~~~-----------~~~~~ 150 (192)
...+.|+++++||+|+.+ ..+.+++.+++.... ... +.+.+
T Consensus 225 ~~~~~piiLv~NK~DL~~eki~~~~l~~~fp~y~g~~~~e~a~~~i~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~iy~ 304 (340)
T 4fid_A 225 FLKGAVKLIFLNKMDLFEEKLTKVPLNTIFPEYTGGDNAVMGAQYIQQLFTGKLQTEEMNISGADGTANIEGAVNEKVYT 304 (340)
T ss_dssp GGTTSEEEEEEECHHHHHHHHHHSCGGGTCTTCCCTTCHHHHHHHHHHHHHTTSEEEESCC--------------CEEEE
T ss_pred ccCCCeEEEEEECchhhhhhcCcchHHHhhhhhcCCCCHHHHHHHHHHhcccccchhhhhccccccccccccccCcceEE
Confidence 557899999999999843 123455544332110 111 46889
Q ss_pred EEeeecCCCCHHHHHHHHHHHHHh
Q 029517 151 EAVSGYDGFGIKESVEWLVEVMER 174 (192)
Q Consensus 151 ~~~Sa~~~~gi~e~~~~i~~~i~~ 174 (192)
++|||+++.||+++|+.+.+.+..
T Consensus 305 h~TsA~dt~nv~~vF~~v~~~Il~ 328 (340)
T 4fid_A 305 NPTNATDGSNIKRVFMLAVDVIMK 328 (340)
T ss_dssp EEECTTCHHHHHHHHHHHHHHHHH
T ss_pred EEEEeeCcHHHHHHHHHHHHHHHH
Confidence 999999999999999999998876
No 109
>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens}
Probab=99.83 E-value=2.8e-22 Score=153.23 Aligned_cols=118 Identities=12% Similarity=0.137 Sum_probs=87.1
Q ss_pred EecCEEEEEEe-----------------------CCCCcccHHHHHHhhh---------------------cCCEEEEEE
Q 029517 52 EVSNSKLVFWD-----------------------LGGQPGLRSIWEKYYE---------------------EAHAVVFVI 87 (192)
Q Consensus 52 ~~~~~~~~i~D-----------------------~~G~~~~~~~~~~~~~---------------------~~d~ii~v~ 87 (192)
+...+.++||| ++|+++|...+..+++ ++|++|+||
T Consensus 91 ~~~~~~l~i~D~~~~~D~~~~~~~~~~~~~~~~~~~g~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vilV~ 170 (255)
T 3c5h_A 91 DCVECKMHIVEQTEFIDDQTFQPHRSTALQPYIKRAAATKLASAEKLMYFCTDQLGLEQDFEQKQMPDGKLLVDGFLLGI 170 (255)
T ss_dssp -----CEEEEEECCCEETTTCSBTTGGGCCCHHHHHTCSEEECTTCBCCCCGGGTTCGGGSCCCBCGGGEEECCEEEEEE
T ss_pred CCcEEEEEEEEccccccccccccccccccccccccchhhhhhhhhhhhhhccccccccccccccccccccccCCEEEEEE
Confidence 44568899999 6666666666666666 799999999
Q ss_pred eCCCc--ccHHHHHHHHHHHHhCCCCCCCcEEEEEeCCCCCCCCCHHHHHhHcCccccCCcceEEEEeeecCCCCHHHHH
Q 029517 88 DAACP--SRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAVSADELARYLDLKKLDERVCMFEAVSGYDGFGIKESV 165 (192)
Q Consensus 88 D~~~~--~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~e~~ 165 (192)
|++++ .+++.+..|+..+.......++|+++|+||+|+......+++.+++. ...+++++++||++|.||+++|
T Consensus 171 D~t~~~~~s~~~~~~~l~~i~~~~~~~~~piilV~NK~Dl~~~~~v~~~~~~~~----~~~~~~~~e~SAk~g~gv~elf 246 (255)
T 3c5h_A 171 DVSRGMNRNFDDQLKFVSNLYNQLAKTKKPIVVVLTKCDEGVERYIRDAHTFAL----SKKNLQVVETSARSNVNVDLAF 246 (255)
T ss_dssp ECBC----CHHHHHHHHHHHHHHHHHTTCCEEEEEECGGGBCHHHHHHHHHHHH----TSSSCCEEECBTTTTBSHHHHH
T ss_pred ECCCCchhhHHHHHHHHHHHHHHhccCCCCEEEEEEcccccccHHHHHHHHHHH----hcCCCeEEEEECCCCCCHHHHH
Confidence 99998 89999999998887642124799999999999865322345555543 1236789999999999999999
Q ss_pred HHHHHHHH
Q 029517 166 EWLVEVME 173 (192)
Q Consensus 166 ~~i~~~i~ 173 (192)
++|.+.+.
T Consensus 247 ~~l~~~l~ 254 (255)
T 3c5h_A 247 STLVQLID 254 (255)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHhc
Confidence 99998764
No 110
>1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal transducing protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A {Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB: 1azt_A* 3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C* 1cjv_C* 1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C* 3g82_C* 3maa_C* 1cul_C* 3sn6_A*
Probab=99.83 E-value=6.1e-21 Score=153.57 Aligned_cols=135 Identities=19% Similarity=0.368 Sum_probs=109.2
Q ss_pred CCCcceEEEEEEecCEEEEEEeCCCCcccHHHHHHhhhcCCEEEEEEeCCC----------cccHHHHHHHHHHHHhCCC
Q 029517 41 VPTVGLNIGRIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAAC----------PSRFEDSKTALEKVLRNED 110 (192)
Q Consensus 41 ~~T~g~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ii~v~D~~~----------~~s~~~~~~~~~~i~~~~~ 110 (192)
.||+|++...+..+++++++|||+|+++++..|..|+++++++|+|||+++ ..+++++..|+..+.....
T Consensus 202 ~~TiGi~~~~~~~~~v~l~iwDtaGQe~~r~~w~~yf~~a~~iIfV~dis~ydq~l~ed~~~ns~~e~~~~~~~i~~~~~ 281 (402)
T 1azs_C 202 VLTSGIFETKFQVDKVNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVASSSYNMVIREDNQTNRLQEALNLFKSIWNNRW 281 (402)
T ss_dssp CCCCSEEEEEEEETTEEEEEEEECCSGGGGGGGGGGTTTCCEEEEEEETTGGGCBCTTTSCSBHHHHHHHHHHHHHTCTT
T ss_pred cceeeeEEEEeecCCccceecccchhhhhhhhhHhhccCCCEEEEEEECcccccccccccccchHHHHHHHHHHHHhccc
Confidence 457888888888889999999999999999999999999999999999999 8999999999999988755
Q ss_pred CCCCcEEEEEeCCCCCCC-----C---------------------------CHHHHHhHcC-----ccc---cCCcceEE
Q 029517 111 LQGAPLLILANKQDLPDA-----V---------------------------SADELARYLD-----LKK---LDERVCMF 150 (192)
Q Consensus 111 ~~~~piiiv~nK~Dl~~~-----~---------------------------~~~~~~~~~~-----~~~---~~~~~~~~ 150 (192)
..+.|+++|+||+|+... + +.+++..++. +.. -..+.+.+
T Consensus 282 ~~~~piiLvgNK~DL~~~ki~~~~~~l~~~fp~y~~~~~~~~~~~~~g~~~~~~~a~~fi~~kF~~~~~~~~~~~~~~~~ 361 (402)
T 1azs_C 282 LRTISVILFLNKQDLLAEKVLAGKSKIEDYFPEFARYTTPEDATPEPGEDPRVTRAKYFIRDEFLRISTASGDGRHYCYP 361 (402)
T ss_dssp CSSCCEEEEEECHHHHHHHHHHCSSCGGGTCGGGGTCCCCSSCCCCTTCCHHHHHHHHHHHHHHHHHHHTSCTTSSCEEE
T ss_pred CCCCeEEEEEEChhhhhhhhcccccchhhccccccccccccccccccCCcccHHHHHHHHHHHHHHhhccccccCcccEE
Confidence 578999999999998431 1 0234444421 000 01235778
Q ss_pred EEeeecCCCCHHHHHHHHHHHHHhc
Q 029517 151 EAVSGYDGFGIKESVEWLVEVMERS 175 (192)
Q Consensus 151 ~~~Sa~~~~gi~e~~~~i~~~i~~~ 175 (192)
++|||+++.||+++|.++.+.+...
T Consensus 362 ~~TSA~d~~nV~~vF~~v~~~I~~~ 386 (402)
T 1azs_C 362 HFTCAVDTENIRRVFNDCRDIIQRM 386 (402)
T ss_dssp EECCTTCHHHHHHHHHHHHHHHHHH
T ss_pred EEEEeecCcCHHHHHHHHHHHHHHH
Confidence 8999999999999999998877644
No 111
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=99.82 E-value=2.7e-20 Score=131.66 Aligned_cols=139 Identities=24% Similarity=0.293 Sum_probs=93.0
Q ss_pred ccccHHHHHHHHhhhhccCCCCCCCCCCCCcceEEEEEEecCEEEEEEeCCCCcc-------cHHHHHHhhhcCCEEEEE
Q 029517 14 TKTEFHTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPG-------LRSIWEKYYEEAHAVVFV 86 (192)
Q Consensus 14 kst~~~~l~~~~~~~~~~~~~~~~~~~~~T~g~~~~~~~~~~~~~~i~D~~G~~~-------~~~~~~~~~~~~d~ii~v 86 (192)
|||++|+|.+..... .......|.......+...+..+.+|||||++. +...+..+++.+|++++|
T Consensus 14 KSsli~~l~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~i~v 86 (161)
T 2dyk_A 14 KSSLFNRLLKKRSAV-------VADVPGVTRDLKEGVVETDRGRFLLVDTGGLWSGDKWEKKIQEKVDRALEDAEVVLFA 86 (161)
T ss_dssp HHHHHHHHHHCCC------------------CCEEEEEEETTEEEEEEECGGGCSSSSCCHHHHHHHHHHTTTCSEEEEE
T ss_pred HHHHHHHHhCCCeee-------ccCCCCceecceEEEEEeCCceEEEEECCCCCCccchHHHHHHHHHHHHHhCCEEEEE
Confidence 788888877543210 011112233344455666778999999999876 455677789999999999
Q ss_pred EeCCCcccHHHHHHHHHHHHhCCCCCCCcEEEEEeCCCCCCCCCHHHHHhHcCccccCCcce-EEEEeeecCCCCHHHHH
Q 029517 87 IDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAVSADELARYLDLKKLDERVC-MFEAVSGYDGFGIKESV 165 (192)
Q Consensus 87 ~D~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~gi~e~~ 165 (192)
+|+++..+... .++..+... .+.|+++|+||+|+.+. .+++.++. ..+. +++++||++|.|++++|
T Consensus 87 ~d~~~~~~~~~--~~~~~~~~~---~~~p~ilv~nK~Dl~~~--~~~~~~~~------~~~~~~~~~~Sa~~~~gv~~l~ 153 (161)
T 2dyk_A 87 VDGRAELTQAD--YEVAEYLRR---KGKPVILVATKVDDPKH--ELYLGPLY------GLGFGDPIPTSSEHARGLEELL 153 (161)
T ss_dssp EESSSCCCHHH--HHHHHHHHH---HTCCEEEEEECCCSGGG--GGGCGGGG------GGSSCSCEECBTTTTBSHHHHH
T ss_pred EECCCcccHhH--HHHHHHHHh---cCCCEEEEEECcccccc--hHhHHHHH------hCCCCCeEEEecccCCChHHHH
Confidence 99988644432 344344333 46899999999998753 22333332 2234 78999999999999999
Q ss_pred HHHHHHH
Q 029517 166 EWLVEVM 172 (192)
Q Consensus 166 ~~i~~~i 172 (192)
++|.+.+
T Consensus 154 ~~l~~~l 160 (161)
T 2dyk_A 154 EAIWERL 160 (161)
T ss_dssp HHHHHHC
T ss_pred HHHHHhC
Confidence 9998764
No 112
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=99.82 E-value=6.8e-20 Score=134.63 Aligned_cols=146 Identities=23% Similarity=0.337 Sum_probs=112.3
Q ss_pred ccccHHHHHHHHhhhhccCCCCCCCCCCCCcceEEE--EEEe--cCEEEEEEeCCCCcccHHHHHHhhhcCCEEEEEEeC
Q 029517 14 TKTEFHTLLEKLKSVYSNVEGLPPDRIVPTVGLNIG--RIEV--SNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDA 89 (192)
Q Consensus 14 kst~~~~l~~~~~~~~~~~~~~~~~~~~~T~g~~~~--~~~~--~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ii~v~D~ 89 (192)
|||++++|.+ ..+...+.||+|..+. .+.. ..+.+.+||++|++.+...+..+++.++++++|+|+
T Consensus 18 KSTLl~~l~~----------~~~~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~ 87 (199)
T 2f9l_A 18 KSNLLSRFTR----------NEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRRITSAYYRGAVGALLVYDI 87 (199)
T ss_dssp HHHHHHHHHH----------SCCCC---CCCSCEEEEEEEEETTEEEEEEEEECSSGGGTTCCCHHHHTTCSEEEEEEET
T ss_pred HHHHHHHHhc----------CCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHHhcCCEEEEEEEC
Confidence 6666666654 3344566788886654 3333 347889999999998888888889999999999999
Q ss_pred CCcccHHHHHHHHHHHHhCCCCCCCcEEEEEeCCCCCC--CCCHHHHHhHcCccccCCcceEEEEeeecCCCCHHHHHHH
Q 029517 90 ACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPD--AVSADELARYLDLKKLDERVCMFEAVSGYDGFGIKESVEW 167 (192)
Q Consensus 90 ~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~e~~~~ 167 (192)
++..+++.+..|+..+..... .+.|+++++||+|+.+ ....+++..++. ..++.++++||+++.|++++|++
T Consensus 88 ~~~~s~~~~~~~~~~~~~~~~-~~~~i~~v~nK~Dl~~~~~~~~~~a~~l~~-----~~~~~~~d~Sal~~~~i~~l~~~ 161 (199)
T 2f9l_A 88 AKHLTYENVERWLKELRDHAD-SNIVIMLVGNKSDLRHLRAVPTDEARAFAE-----KNNLSFIETSALDSTNVEEAFKN 161 (199)
T ss_dssp TCHHHHHTHHHHHHHHHHHSC-TTCEEEEEEECTTCGGGCCSCHHHHHHHHH-----HTTCEEEECCTTTCTTHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHHHhcC-CCCeEEEEEECcccccccCcCHHHHHHHHH-----HcCCeEEEEeCCCCCCHHHHHHH
Confidence 999899888888877765321 4689999999999965 455666766665 45678999999999999999999
Q ss_pred HHHHHHhc
Q 029517 168 LVEVMERS 175 (192)
Q Consensus 168 i~~~i~~~ 175 (192)
|.+.+.+.
T Consensus 162 l~~~~~~~ 169 (199)
T 2f9l_A 162 ILTEIYRI 169 (199)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99988654
No 113
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=99.82 E-value=2.4e-20 Score=134.22 Aligned_cols=141 Identities=15% Similarity=0.156 Sum_probs=95.0
Q ss_pred ccccHHHHHHHHhhhhccCCCCCCCCCCCCcceEEEEEEecCEEEEEEeCCCCccc----HH----HHHHhhhcCCEEEE
Q 029517 14 TKTEFHTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPGL----RS----IWEKYYEEAHAVVF 85 (192)
Q Consensus 14 kst~~~~l~~~~~~~~~~~~~~~~~~~~~T~g~~~~~~~~~~~~~~i~D~~G~~~~----~~----~~~~~~~~~d~ii~ 85 (192)
|||++|+|.+...... ......|.+.....+...+..+.+|||||++++ .. ....+++.+|++++
T Consensus 17 KStLl~~l~~~~~~~~-------~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~ad~~i~ 89 (172)
T 2gj8_A 17 KSSLLNALAGREAAIV-------TDIAGTTRDVLREHIHIDGMPLHIIDTAGLREASDEVERIGIERAWQEIEQADRVLF 89 (172)
T ss_dssp HHHHHHHHHTSCCSCC-------CSSTTCCCSCEEEEEEETTEEEEEEECCCCSCCSSHHHHHHHHHHHHHHHTCSEEEE
T ss_pred HHHHHHHHhCCCccee-------eCCCCceeceeeEEEEECCeEEEEEECCCcccchhHHHHHHHHHHHHHHHhCCEEEE
Confidence 7888888865422111 111122333334456666778999999998643 11 12246899999999
Q ss_pred EEeCCCcccHHHHHHHHHHHHhCCCCCCCcEEEEEeCCCCCCCCCHHHHHhHcCccccCCcceEEEEeeecCCCCHHHHH
Q 029517 86 VIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAVSADELARYLDLKKLDERVCMFEAVSGYDGFGIKESV 165 (192)
Q Consensus 86 v~D~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~e~~ 165 (192)
|+|+++..+++. ..|+..+..... .++|+++|+||+|+.+.. .++.. ..+.+++++||++|.||+++|
T Consensus 90 v~D~~~~~s~~~-~~~~~~~~~~~~-~~~p~ilv~NK~Dl~~~~-----~~~~~-----~~~~~~~~~SA~~g~gv~~l~ 157 (172)
T 2gj8_A 90 MVDGTTTDAVDP-AEIWPEFIARLP-AKLPITVVRNKADITGET-----LGMSE-----VNGHALIRLSARTGEGVDVLR 157 (172)
T ss_dssp EEETTTCCCCSH-HHHCHHHHHHSC-TTCCEEEEEECHHHHCCC-----CEEEE-----ETTEEEEECCTTTCTTHHHHH
T ss_pred EEECCCCCCHHH-HHHHHHHHHhcc-cCCCEEEEEECccCCcch-----hhhhh-----ccCCceEEEeCCCCCCHHHHH
Confidence 999998887753 466666655432 479999999999985421 01111 236789999999999999999
Q ss_pred HHHHHHHH
Q 029517 166 EWLVEVME 173 (192)
Q Consensus 166 ~~i~~~i~ 173 (192)
++|.+.+.
T Consensus 158 ~~l~~~~~ 165 (172)
T 2gj8_A 158 NHLKQSMG 165 (172)
T ss_dssp HHHHHHC-
T ss_pred HHHHHHhh
Confidence 99987653
No 114
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=99.81 E-value=1.8e-19 Score=129.48 Aligned_cols=148 Identities=17% Similarity=0.242 Sum_probs=101.3
Q ss_pred ccccHHHHHHHHhhhhccCCCCCCCCCCCCcc--eEEEEEEecCEEEEEEeCCCCcccHHHHHHhhhcCCEEEEEEeCCC
Q 029517 14 TKTEFHTLLEKLKSVYSNVEGLPPDRIVPTVG--LNIGRIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAAC 91 (192)
Q Consensus 14 kst~~~~l~~~~~~~~~~~~~~~~~~~~~T~g--~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ii~v~D~~~ 91 (192)
|||++|+|++. .+...+.|+++ .....+...+..+.+|||||++++...+..+++.+|++++|+|+++
T Consensus 21 Kssl~~~l~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~ 90 (178)
T 2lkc_A 21 KTTLLDAIRHS----------KVTEQEAGGITQHIGAYQVTVNDKKITFLDTPGHEAFTTMRARGAQVTDIVILVVAADD 90 (178)
T ss_dssp HHHHHHHHHTT----------CSSCSSCCSSSTTCCCCEEEETTEEEEESCCCSSSSSSCSCCSSCCCCCEEEEEEETTC
T ss_pred HHHHHHHHhCC----------ccccCCCCceeEeeeEEEEEeCCceEEEEECCCCHHHHHHHHHHHhhCCEEEEEEECCC
Confidence 67777776542 23333334333 2233466677889999999999988888888899999999999987
Q ss_pred cccHHHHHHHHHHHHhCCCCCCCcEEEEEeCCCCCCCCCHHHHHhHcCccc-c-CCc--ceEEEEeeecCCCCHHHHHHH
Q 029517 92 PSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAVSADELARYLDLKK-L-DER--VCMFEAVSGYDGFGIKESVEW 167 (192)
Q Consensus 92 ~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~-~-~~~--~~~~~~~Sa~~~~gi~e~~~~ 167 (192)
+...... +.+..+.. .++|+++|+||+|+... ..+++.+.+.... . ... .++++++||++|.||+++|++
T Consensus 91 ~~~~~~~-~~l~~~~~----~~~p~ilv~nK~Dl~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~ 164 (178)
T 2lkc_A 91 GVMPQTV-EAINHAKA----ANVPIIVAINKMDKPEA-NPDRVMQELMEYNLVPEEWGGDTIFCKLSAKTKEGLDHLLEM 164 (178)
T ss_dssp CCCHHHH-HHHHHHGG----GSCCEEEEEETTTSSCS-CHHHHHHHHTTTTCCBTTTTSSEEEEECCSSSSHHHHHHHHH
T ss_pred CCcHHHH-HHHHHHHh----CCCCEEEEEECccCCcC-CHHHHHHHHHhcCcChhHcCCcccEEEEecCCCCCHHHHHHH
Confidence 5433322 23333322 36899999999999764 3444444443111 1 111 278999999999999999999
Q ss_pred HHHHHHhcch
Q 029517 168 LVEVMERSKR 177 (192)
Q Consensus 168 i~~~i~~~~~ 177 (192)
|.+.+...+.
T Consensus 165 l~~~~~~~~~ 174 (178)
T 2lkc_A 165 ILLVSEMEEL 174 (178)
T ss_dssp HHHHHHHTTT
T ss_pred HHHhhhhhcc
Confidence 9998776543
No 115
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=99.81 E-value=7.7e-20 Score=133.50 Aligned_cols=108 Identities=19% Similarity=0.236 Sum_probs=81.9
Q ss_pred EEEEEeCCC----------CcccHHHHHHhhhcC---CEEEEEEeCCCcccHHHHHHHHHHHHhCCCCCCCcEEEEEeCC
Q 029517 57 KLVFWDLGG----------QPGLRSIWEKYYEEA---HAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQ 123 (192)
Q Consensus 57 ~~~i~D~~G----------~~~~~~~~~~~~~~~---d~ii~v~D~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~ 123 (192)
++.+||||| ++.+...+..+++.+ |++++|+|+++..++.... ++ ..... .+.|+++|+||+
T Consensus 70 ~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~-~~-~~~~~---~~~p~i~v~nK~ 144 (195)
T 1svi_A 70 ELHFVDVPGYGFAKVSKSEREAWGRMIETYITTREELKAVVQIVDLRHAPSNDDVQ-MY-EFLKY---YGIPVIVIATKA 144 (195)
T ss_dssp TEEEEECCCBCCCSSCHHHHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCCHHHHH-HH-HHHHH---TTCCEEEEEECG
T ss_pred cEEEEECCCCCccccCHHHHHHHHHHHHHHHhhhhcCCEEEEEEECCCCCCHHHHH-HH-HHHHH---cCCCEEEEEECc
Confidence 699999999 777888888888887 9999999999887776632 12 22222 468999999999
Q ss_pred CCCCCCCH----HHHHhHcCccccCCcceEEEEeeecCCCCHHHHHHHHHHHHH
Q 029517 124 DLPDAVSA----DELARYLDLKKLDERVCMFEAVSGYDGFGIKESVEWLVEVME 173 (192)
Q Consensus 124 Dl~~~~~~----~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~e~~~~i~~~i~ 173 (192)
|+...... +++.+.+. ...+.+++++||++|.||+++|++|.+.+.
T Consensus 145 Dl~~~~~~~~~~~~~~~~~~----~~~~~~~~~~Sa~~~~gv~~l~~~l~~~l~ 194 (195)
T 1svi_A 145 DKIPKGKWDKHAKVVRQTLN----IDPEDELILFSSETKKGKDEAWGAIKKMIN 194 (195)
T ss_dssp GGSCGGGHHHHHHHHHHHHT----CCTTSEEEECCTTTCTTHHHHHHHHHHHHT
T ss_pred ccCChHHHHHHHHHHHHHHc----ccCCCceEEEEccCCCCHHHHHHHHHHHhc
Confidence 99763322 23333232 134689999999999999999999988764
No 116
>2xtz_A Guanine nucleotide-binding protein alpha-1 subuni; hydrolase, G-protein signaling, SELF-activation, RAS-like DO; HET: GSP; 2.34A {Arabidopsis thaliana}
Probab=99.81 E-value=1e-20 Score=150.50 Aligned_cols=135 Identities=21% Similarity=0.338 Sum_probs=102.8
Q ss_pred CCCcceEEEEEEe------cCEEEEEEeCCCCcccHHHHHHhhhcCCEEEEEEeCC----------CcccHHHHHHHHHH
Q 029517 41 VPTVGLNIGRIEV------SNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAA----------CPSRFEDSKTALEK 104 (192)
Q Consensus 41 ~~T~g~~~~~~~~------~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ii~v~D~~----------~~~s~~~~~~~~~~ 104 (192)
.+|.|+....+.. +.+++++|||+|+++++..|..|+++++++|+|+|++ +.++++++..|+..
T Consensus 162 ~~T~Gi~e~~f~~~~~~~~~~v~l~iwDtaGQe~~r~~~~~y~~~~~~iI~v~dis~ydq~l~e~~~~~s~~~~~~~~~~ 241 (354)
T 2xtz_A 162 VRTTGVVEIQFSPVGENKKSGEVYRLFDVGGQRNERRKWIHLFEGVTAVIFCAAISEYDQTLFEDEQKNRMMETKELFDW 241 (354)
T ss_dssp CCCCSEEEEEECCCCE------EEEEEEECCSTTGGGGTGGGCTTEEEEEEEEEGGGTTCBCSSCTTSBHHHHHHHHHHH
T ss_pred ccccceeeEEEEeccCccccceeeEEEECCCchhhhHHHHHHhCCCCEEEEEEECcccccccccccchhHHHHHHHHHHH
Confidence 3456666666554 4689999999999999999999999999999999998 78899999999999
Q ss_pred HHhCCCCCCCcEEEEEeCCCCCCC----C-------------------CHHHHHhHcCcc-------c----cCCcceEE
Q 029517 105 VLRNEDLQGAPLLILANKQDLPDA----V-------------------SADELARYLDLK-------K----LDERVCMF 150 (192)
Q Consensus 105 i~~~~~~~~~piiiv~nK~Dl~~~----~-------------------~~~~~~~~~~~~-------~----~~~~~~~~ 150 (192)
+.......+.|+++|+||+|+.+. + +.+++.+++... . .....+.+
T Consensus 242 i~~~~~~~~~piiLvgNK~DL~~~k~~~v~l~~~~~fp~y~~~~~~~~~~~~a~~~~~~~f~~l~~~~~~~~~~~~~~~~ 321 (354)
T 2xtz_A 242 VLKQPCFEKTSFMLFLNKFDIFEKKVLDVPLNVCEWFRDYQPVSSGKQEIEHAYEFVKKKFEELYYQNTAPDRVDRVFKI 321 (354)
T ss_dssp HHTCGGGSSCEEEEEEECHHHHHHHTTTSCGGGSGGGTTCCCCSSHHHHHHHHHHHHHHHHHHHHHHTCCTTTTTSCEEE
T ss_pred HHhccccCCCeEEEEEECcchhhhhcccccccccccccccccccCCCcCHHHHHHHHHHHHHHhhhccccccccCcceEE
Confidence 987654468999999999998431 1 134444443210 0 00235667
Q ss_pred EEeeecCCCCHHHHHHHHHHHHHhc
Q 029517 151 EAVSGYDGFGIKESVEWLVEVMERS 175 (192)
Q Consensus 151 ~~~Sa~~~~gi~e~~~~i~~~i~~~ 175 (192)
++|||+++.||+++|+++.+.+.+.
T Consensus 322 ~eTSA~d~~nV~~vF~~v~~~I~~~ 346 (354)
T 2xtz_A 322 YRTTALDQKLVKKTFKLVDETLRRR 346 (354)
T ss_dssp EECCTTCHHHHHHHHHHHHHHHHHH
T ss_pred EEEEeecchhHHHHHHHHHHHHHHH
Confidence 9999999999999999999887643
No 117
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=99.81 E-value=1.5e-19 Score=141.64 Aligned_cols=148 Identities=20% Similarity=0.200 Sum_probs=105.5
Q ss_pred hccccHHHHHHHHhhhhccCCCCCCCCCCCCcceEEEEEEec-CEEEEEEeCCCCccc----------HHHHHHhhhcCC
Q 029517 13 FTKTEFHTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVS-NSKLVFWDLGGQPGL----------RSIWEKYYEEAH 81 (192)
Q Consensus 13 ~kst~~~~l~~~~~~~~~~~~~~~~~~~~~T~g~~~~~~~~~-~~~~~i~D~~G~~~~----------~~~~~~~~~~~d 81 (192)
=|||++|+|+++.....+. ....|.......+... +.++.+|||||+..+ ...+..+++.+|
T Consensus 22 GKSTLin~l~g~~~~i~s~-------~~~tT~~~~~~~~~~~~~~~i~lvDTPG~~~~~~~~~l~~~~~~~~~~~l~~aD 94 (308)
T 3iev_A 22 GKSTLLNNLLGTKVSIISP-------KAGTTRMRVLGVKNIPNEAQIIFLDTPGIYEPKKSDVLGHSMVEIAKQSLEEAD 94 (308)
T ss_dssp SHHHHHHHHHTSCCSCCCS-------SSCCCCSCEEEEEEETTTEEEEEEECCCCCCCCTTCHHHHHHHHHHHHHHHHCS
T ss_pred cHHHHHHHHhCCCccccCC-------CCCceeeEEEEEEecCCCCeEEEEECcCCCccccchhHHHHHHHHHHHHhhcCC
Confidence 3899999888654332222 2233344444556666 899999999998543 356677889999
Q ss_pred EEEEEEeCCCcccHHHHHHHHHHHHhCCCCCCCcEEEEEeCCCCC-CC-CCHHHHHhHcCccccCCcceEEEEeeecCCC
Q 029517 82 AVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLP-DA-VSADELARYLDLKKLDERVCMFEAVSGYDGF 159 (192)
Q Consensus 82 ~ii~v~D~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 159 (192)
++++|+|+++..+......|+..+.. .+.|+++|+||+|+. .. ...+.+..+.... ....+++++||++|.
T Consensus 95 ~il~VvD~~~~~~~~~~~~~~~~l~~----~~~pvilV~NK~Dl~~~~~~~~~~~~~l~~~~---~~~~~i~~vSA~~g~ 167 (308)
T 3iev_A 95 VILFMIDATEGWRPRDEEIYQNFIKP----LNKPVIVVINKIDKIGPAKNVLPLIDEIHKKH---PELTEIVPISALKGA 167 (308)
T ss_dssp EEEEEEETTTBSCHHHHHHHHHHTGG----GCCCEEEEEECGGGSSSGGGGHHHHHHHHHHC---TTCCCEEECBTTTTB
T ss_pred EEEEEEeCCCCCCchhHHHHHHHHHh----cCCCEEEEEECccCCCCHHHHHHHHHHHHHhc---cCCCeEEEEeCCCCC
Confidence 99999999998888887776776655 368999999999997 32 2222333332210 123679999999999
Q ss_pred CHHHHHHHHHHHHHh
Q 029517 160 GIKESVEWLVEVMER 174 (192)
Q Consensus 160 gi~e~~~~i~~~i~~ 174 (192)
|+++++++|.+.+..
T Consensus 168 gv~~L~~~l~~~l~~ 182 (308)
T 3iev_A 168 NLDELVKTILKYLPE 182 (308)
T ss_dssp SHHHHHHHHHHHSCB
T ss_pred CHHHHHHHHHHhCcc
Confidence 999999999987754
No 118
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=99.80 E-value=2.9e-19 Score=127.55 Aligned_cols=136 Identities=23% Similarity=0.214 Sum_probs=92.5
Q ss_pred ccccHHHHHHHHhhhhccCCCCCCCCCCCC--cceEEEEEEecCEEEEEEeCCCCcccH------HHHHHhhh--cCCEE
Q 029517 14 TKTEFHTLLEKLKSVYSNVEGLPPDRIVPT--VGLNIGRIEVSNSKLVFWDLGGQPGLR------SIWEKYYE--EAHAV 83 (192)
Q Consensus 14 kst~~~~l~~~~~~~~~~~~~~~~~~~~~T--~g~~~~~~~~~~~~~~i~D~~G~~~~~------~~~~~~~~--~~d~i 83 (192)
|||++|+|.+... ...+.|+ .......+...+..+.+|||||++++. .....+++ +++++
T Consensus 16 KStL~~~l~~~~~----------~~~~~~~~t~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (165)
T 2wji_A 16 KSTIFNALTGENV----------YIGNWPGVTVEKKEGEFEYNGEKFKVVDLPGVYSLTANSIDEIIARDYIINEKPDLV 85 (165)
T ss_dssp HHHHHHHHHCCSS----------SCC-----CCCCCEEEEEETTEEEEEEECCCCSCSSSSSHHHHHHHHHHHHHCCSEE
T ss_pred HHHHHHHHhCCCe----------eccCCCCcceeeeEEEEEECCcEEEEEECCCcccCCCcchhHHHHHHHHhcCCCCEE
Confidence 7888887764321 1112233 233344566667899999999998763 34456665 89999
Q ss_pred EEEEeCCCcccHHHHHHHHHHHHhCCCCCCCcEEEEEeCCCCCC--CCCHHHHHhHcCccccCCcceEEEEeeecCCCCH
Q 029517 84 VFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPD--AVSADELARYLDLKKLDERVCMFEAVSGYDGFGI 161 (192)
Q Consensus 84 i~v~D~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi 161 (192)
++|+|+++. +....|+..+.+. +.|+++|+||+|+.. .+.. +..++.. ..+.+++++||++|.||
T Consensus 86 i~v~D~~~~---~~~~~~~~~~~~~----~~p~ilv~nK~Dl~~~~~~~~-~~~~~~~-----~~~~~~~~~SA~~~~~v 152 (165)
T 2wji_A 86 VNIVDATAL---ERNLYLTLQLMEM----GANLLLALNKMDLAKSLGIEI-DVDKLEK-----ILGVKVVPLSAAKKMGI 152 (165)
T ss_dssp EEEEETTCH---HHHHHHHHHHHHT----TCCEEEEEECHHHHHHTTCCC-CHHHHHH-----HHTSCEEECBGGGTBSH
T ss_pred EEEecCCch---hHhHHHHHHHHhc----CCCEEEEEEchHhccccChhh-HHHHHHH-----HhCCCEEEEEcCCCCCH
Confidence 999999874 4455676666543 689999999999853 2211 2233332 22468999999999999
Q ss_pred HHHHHHHHHHH
Q 029517 162 KESVEWLVEVM 172 (192)
Q Consensus 162 ~e~~~~i~~~i 172 (192)
+++|++|.+.+
T Consensus 153 ~~l~~~l~~~~ 163 (165)
T 2wji_A 153 EELKKAISIAV 163 (165)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHHHh
Confidence 99999998765
No 119
>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*
Probab=99.79 E-value=4.2e-18 Score=140.48 Aligned_cols=141 Identities=22% Similarity=0.286 Sum_probs=102.5
Q ss_pred hccccHHHHHHHHhhhhccCCCCCCCCCCCCcceEEEEEEecCEEEEEEeCCCCc-ccH--------HHHHHhhhcCCEE
Q 029517 13 FTKTEFHTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQP-GLR--------SIWEKYYEEAHAV 83 (192)
Q Consensus 13 ~kst~~~~l~~~~~~~~~~~~~~~~~~~~~T~g~~~~~~~~~~~~~~i~D~~G~~-~~~--------~~~~~~~~~~d~i 83 (192)
=|||++|+|++.-.....+.++. |.......+...+..+.+|||||.. .+. .....+++.+|++
T Consensus 255 GKSSLln~L~~~~~a~vs~~~gT-------T~d~~~~~i~~~g~~~~l~DTaG~~~~~~~~ve~~gi~~~~~~~~~aD~v 327 (482)
T 1xzp_A 255 GKSTLLNRLLNEDRAIVTDIPGT-------TRDVISEEIVIRGILFRIVDTAGVRSETNDLVERLGIERTLQEIEKADIV 327 (482)
T ss_dssp HTCHHHHHHHHHTBCCCCCSSCC-------SSCSCCEEEEETTEEEEEEESSCCCSSCCTTCCCCCHHHHHHHHHHCSEE
T ss_pred cHHHHHHHHHCCCCCccCCCCCe-------eeeeEEEEEecCCeEEEEEECCCccccchhhHHHHHHHHHHHHhhcccEE
Confidence 38999999988744333333332 3333344566678899999999987 542 2345688999999
Q ss_pred EEEEeCCCcccHHHHHHHHHHHHhCCCCCCCcEEEEEeCCCCCCCCCHHHHHhHcCccccCCcceEEEEeeecCCCCHHH
Q 029517 84 VFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAVSADELARYLDLKKLDERVCMFEAVSGYDGFGIKE 163 (192)
Q Consensus 84 i~v~D~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~e 163 (192)
|+|+|++++.+++... ++..+ .++|+++|+||+|+....+.+++.+++. .+.+++++||++|.||++
T Consensus 328 l~VvD~s~~~s~~~~~-il~~l------~~~piivV~NK~DL~~~~~~~~~~~~~~------~~~~~i~iSAktg~Gi~e 394 (482)
T 1xzp_A 328 LFVLDASSPLDEEDRK-ILERI------KNKRYLVVINKVDVVEKINEEEIKNKLG------TDRHMVKISALKGEGLEK 394 (482)
T ss_dssp EEEEETTSCCCHHHHH-HHHHH------TTSSEEEEEEECSSCCCCCHHHHHHHHT------CSTTEEEEEGGGTCCHHH
T ss_pred EEEecCCCCCCHHHHH-HHHHh------cCCCEEEEEECcccccccCHHHHHHHhc------CCCcEEEEECCCCCCHHH
Confidence 9999999888776532 22222 3689999999999987656666665543 235789999999999999
Q ss_pred HHHHHHHHHH
Q 029517 164 SVEWLVEVME 173 (192)
Q Consensus 164 ~~~~i~~~i~ 173 (192)
++++|.+.+.
T Consensus 395 L~~~l~~~~~ 404 (482)
T 1xzp_A 395 LEESIYRETQ 404 (482)
T ss_dssp HHHHHHHHTH
T ss_pred HHHHHHHHHh
Confidence 9999998755
No 120
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=99.78 E-value=1.1e-18 Score=127.55 Aligned_cols=143 Identities=21% Similarity=0.327 Sum_probs=111.8
Q ss_pred ccccHHHHHHHHhhhhccCCCCCCCCCCCCcceEEE--EEEe--cCEEEEEEeCCCCcccHHHHHHhhhcCCEEEEEEeC
Q 029517 14 TKTEFHTLLEKLKSVYSNVEGLPPDRIVPTVGLNIG--RIEV--SNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDA 89 (192)
Q Consensus 14 kst~~~~l~~~~~~~~~~~~~~~~~~~~~T~g~~~~--~~~~--~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ii~v~D~ 89 (192)
|||++|+|.+ ..+...+.||+|.++. .+.. ..+.+++||++|++++...+..+++.++++++|+|.
T Consensus 42 KSTLl~~l~~----------~~~~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~ 111 (191)
T 1oix_A 42 KSNLLSRFTR----------NEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLERYRAITSAYYRGAVGALLVYDI 111 (191)
T ss_dssp HHHHHHHHHH----------SCCCCSCCCCCSEEEEEEEEEETTEEEEEEEEEECSCCSSSCCCHHHHTTCCEEEEEEET
T ss_pred HHHHHHHHhc----------CCCCCCCCCccceEEEEEEEEECCEEEEEEEEECCCCcchhhhhHHHhhcCCEEEEEEEC
Confidence 5666666544 3445667889987764 3433 346778899999998888888889999999999999
Q ss_pred CCcccHHHHHHHHHHHHhCCCCCCCcEEEEEeCCCCCC--CCCHHHHHhHcCccccCCcceEEEEeeecCCCCHHHHHHH
Q 029517 90 ACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPD--AVSADELARYLDLKKLDERVCMFEAVSGYDGFGIKESVEW 167 (192)
Q Consensus 90 ~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~e~~~~ 167 (192)
++..+++.+..|+..+..... .+.|+++++||+|+.+ ....+++..++. ..++.++++||+++.|++++|++
T Consensus 112 ~~~~s~~~~~~~~~~~~~~~~-~~~~i~~v~nK~Dl~~~~~~~~~~a~~l~~-----~~~~~~ld~Sald~~~v~~l~~~ 185 (191)
T 1oix_A 112 AKHLTYENVERWLKELRDHAD-SNIVIMLVGNKSDLRHLRAVPTDEARAFAE-----KNGLSFIETSALDSTNVEAAFQT 185 (191)
T ss_dssp TCHHHHHTHHHHHHHHHHHSC-TTCEEEEEEECGGGGGGCCSCHHHHHHHHH-----HTTCEEEECCTTTCTTHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHHHhcC-CCCcEEEEEECcccccccccCHHHHHHHHH-----HcCCEEEEEeCCCCCCHHHHHHH
Confidence 999888888888877655321 4689999999999865 455666776665 45678999999999999999999
Q ss_pred HHHHH
Q 029517 168 LVEVM 172 (192)
Q Consensus 168 i~~~i 172 (192)
|.+.+
T Consensus 186 l~~~i 190 (191)
T 1oix_A 186 ILTEI 190 (191)
T ss_dssp HHHHH
T ss_pred HHHHh
Confidence 98765
No 121
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=99.78 E-value=1.3e-19 Score=131.49 Aligned_cols=152 Identities=17% Similarity=0.110 Sum_probs=97.9
Q ss_pred ccccHHHHHHHHhhhhccCCCCCCCCCCCCcceEEEEEEecCEEEEEEeCCC-----------CcccHHHHHHhhhc-CC
Q 029517 14 TKTEFHTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGG-----------QPGLRSIWEKYYEE-AH 81 (192)
Q Consensus 14 kst~~~~l~~~~~~~~~~~~~~~~~~~~~T~g~~~~~~~~~~~~~~i~D~~G-----------~~~~~~~~~~~~~~-~d 81 (192)
|||++|+|++. .+...+.|+.......+... .+.+||||| ++.+...+..+++. ++
T Consensus 14 KSsli~~l~~~----------~~~~~~~~~~t~~~~~~~~~--~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (190)
T 2cxx_A 14 KSTLIYRLTGK----------KVRRGKRPGVTRKIIEIEWK--NHKIIDMPGFGFMMGLPKEVQERIKDEIVHFIEDNAK 81 (190)
T ss_dssp HHHHHHHHHSC----------CCSSSSSTTCTTSCEEEEET--TEEEEECCCBSCCTTSCHHHHHHHHHHHHHHHHHHGG
T ss_pred HHHHHHHHhCc----------CCccCCCCCccceeEEEecC--CEEEEECCCccccccCCHHHHHHHHHHHHHHHHhhhc
Confidence 67777777642 23344455554444444443 789999999 67788888888887 77
Q ss_pred EEEEEEeCCCcccHHHH-HHHHHH--------HHhCCCCCCCcEEEEEeCCCCCCCCCHHHHHhHcCccccC--CcceEE
Q 029517 82 AVVFVIDAACPSRFEDS-KTALEK--------VLRNEDLQGAPLLILANKQDLPDAVSADELARYLDLKKLD--ERVCMF 150 (192)
Q Consensus 82 ~ii~v~D~~~~~s~~~~-~~~~~~--------i~~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~--~~~~~~ 150 (192)
++++|+++.+..++..+ ..|... +.......++|+++|+||+|+.... .+++.++....... ....++
T Consensus 82 ~~~~v~~v~d~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~-~~~~~~~~~~~~~~~~~~~~~~ 160 (190)
T 2cxx_A 82 NIDVAVLVVDGKAAPEIIKRWEKRGEIPIDVEFYQFLRELDIPTIVAVNKLDKIKNV-QEVINFLAEKFEVPLSEIDKVF 160 (190)
T ss_dssp GCCEEEEEEETTHHHHHHHHHHHTTCCCHHHHHHHHHHHTTCCEEEEEECGGGCSCH-HHHHHHHHHHHTCCGGGHHHHE
T ss_pred cCCEEEEEEcchhhhhHHHhhhccCccHHHHHHHHHHHhcCCceEEEeehHhccCcH-HHHHHHHHHHhhhhhhccCCcE
Confidence 77777777777777765 444431 1111111479999999999997643 33344443311010 002368
Q ss_pred EEeeecCCCCHHHHHHHHHHHHHhcchh
Q 029517 151 EAVSGYDGFGIKESVEWLVEVMERSKRT 178 (192)
Q Consensus 151 ~~~Sa~~~~gi~e~~~~i~~~i~~~~~~ 178 (192)
+++||++|.||+++|++|.+.+.+.+.+
T Consensus 161 ~~~Sa~~~~~v~~l~~~l~~~~~~~~~~ 188 (190)
T 2cxx_A 161 IPISAKFGDNIERLKNRIFEVIRERQGR 188 (190)
T ss_dssp EECCTTTCTTHHHHHHHHHHHHHHC---
T ss_pred EEEecCCCCCHHHHHHHHHHhcchhhcc
Confidence 9999999999999999999988776543
No 122
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=99.78 E-value=3.4e-19 Score=132.86 Aligned_cols=152 Identities=14% Similarity=0.144 Sum_probs=94.1
Q ss_pred ccccHHHHHHHHhhhhccCCCCCCCCCCCCcceEEEEEE-ecCEEEEEEeCCCC----------cccHHHHHHhhhc---
Q 029517 14 TKTEFHTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIE-VSNSKLVFWDLGGQ----------PGLRSIWEKYYEE--- 79 (192)
Q Consensus 14 kst~~~~l~~~~~~~~~~~~~~~~~~~~~T~g~~~~~~~-~~~~~~~i~D~~G~----------~~~~~~~~~~~~~--- 79 (192)
|||++|+|+++-.. .........|....+..+. ..+..+.+|||||. +.+...+..+++.
T Consensus 42 KSslin~l~~~~~~------~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~ 115 (223)
T 4dhe_A 42 KSTAINVLCNQKRL------AFASKTPGRTQHINYFSVGPAAEPVAHLVDLPGYGYAEVPGAAKAHWEQLLSSYLQTRPQ 115 (223)
T ss_dssp HHHHHHHHTTCSSS------SCTTCCCCSCCCEEEEEESCTTSCSEEEEECCCCCSSCCCSTHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHhCCCcc------eeecCCCCcccceEEEEecCCCCCcEEEEcCCCCCcccCChhhHHHHHHHHHHHHhcCcC
Confidence 67777776654210 0111222334454455554 44678999999994 4456667777777
Q ss_pred CCEEEEEEeCCCcccHHHHHHHHHHHHhCCCCCCCcEEEEEeCCCCCCCCCH----HHHHhHcCcc-c-cCCcceEEEEe
Q 029517 80 AHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAVSA----DELARYLDLK-K-LDERVCMFEAV 153 (192)
Q Consensus 80 ~d~ii~v~D~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~~~~~----~~~~~~~~~~-~-~~~~~~~~~~~ 153 (192)
+|++++|+|+++..+.. -..++..+.. .++|+++|+||+|+...... +++.+.+... . ......+++++
T Consensus 116 ~d~vi~v~d~~~~~~~~-~~~~~~~l~~----~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 190 (223)
T 4dhe_A 116 LCGMILMMDARRPLTEL-DRRMIEWFAP----TGKPIHSLLTKCDKLTRQESINALRATQKSLDAYRDAGYAGKLTVQLF 190 (223)
T ss_dssp EEEEEEEEETTSCCCHH-HHHHHHHHGG----GCCCEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHHTCCSCEEEEEE
T ss_pred cCEEEEEEeCCCCCCHH-HHHHHHHHHh----cCCCEEEEEeccccCChhhHHHHHHHHHHHHHhhhhcccCCCCeEEEe
Confidence 77799999998764422 2234443333 36899999999998753221 1122222100 0 00246889999
Q ss_pred eecCCCCHHHHHHHHHHHHHhcc
Q 029517 154 SGYDGFGIKESVEWLVEVMERSK 176 (192)
Q Consensus 154 Sa~~~~gi~e~~~~i~~~i~~~~ 176 (192)
||++|.||+++|++|.+.+....
T Consensus 191 SA~~g~gv~~l~~~l~~~~~~~~ 213 (223)
T 4dhe_A 191 SALKRTGLDDAHALIESWLRPAA 213 (223)
T ss_dssp BTTTTBSHHHHHHHHHHHHC---
T ss_pred ecCCCcCHHHHHHHHHHhcCccC
Confidence 99999999999999999876543
No 123
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=99.77 E-value=1e-18 Score=143.06 Aligned_cols=144 Identities=21% Similarity=0.243 Sum_probs=94.6
Q ss_pred hccccHHHHHHHHhhhhccCCCCCCCCCCCCcceEEEEEEecCEEEEEEeCCCCcc---------cHHHHHHhhhcCCEE
Q 029517 13 FTKTEFHTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPG---------LRSIWEKYYEEAHAV 83 (192)
Q Consensus 13 ~kst~~~~l~~~~~~~~~~~~~~~~~~~~~T~g~~~~~~~~~~~~~~i~D~~G~~~---------~~~~~~~~~~~~d~i 83 (192)
=|||+||+|+++....+.+.++.+.+. .+..+...+..+.+|||||.+. +...+..+++++|++
T Consensus 13 GKStL~nrl~~~~~~~v~~~~g~T~d~-------~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~~~ad~i 85 (439)
T 1mky_A 13 GKSTLFNKLVKKKKAIVEDEEGVTRDP-------VQDTVEWYGKTFKLVDTCGVFDNPQDIISQKMKEVTLNMIREADLV 85 (439)
T ss_dssp SHHHHHHHHHC--------------CC-------SEEEEEETTEEEEEEECTTTTSSGGGCCCHHHHHHHHHHHTTCSEE
T ss_pred CHHHHHHHHhCCCCceecCCCCCccce-------eeEEEEECCeEEEEEECCCccccccchHHHHHHHHHHHHHHhCCEE
Confidence 489999999976544444444333333 3556666788899999999763 355677889999999
Q ss_pred EEEEeCCCcccHHHHHHHHHHHHhCCCCCCCcEEEEEeCCCCCCCCCHHHH-HhHcCccccCCcce-EEEEeeecCCCCH
Q 029517 84 VFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAVSADEL-ARYLDLKKLDERVC-MFEAVSGYDGFGI 161 (192)
Q Consensus 84 i~v~D~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~~~~~~~~-~~~~~~~~~~~~~~-~~~~~Sa~~~~gi 161 (192)
++|+|++++.+... .++..+++. .++|+++|+||+|+.... ..++ .++.. .++ +++++||++|.|+
T Consensus 86 l~V~D~~~~~~~~d--~~i~~~l~~---~~~p~ilv~NK~D~~~~~-~~~~~~~~~~------lg~~~~~~iSA~~g~gv 153 (439)
T 1mky_A 86 LFVVDGKRGITKED--ESLADFLRK---STVDTILVANKAENLREF-EREVKPELYS------LGFGEPIPVSAEHNINL 153 (439)
T ss_dssp EEEEETTTCCCHHH--HHHHHHHHH---HTCCEEEEEESCCSHHHH-HHHTHHHHGG------GSSCSCEECBTTTTBSH
T ss_pred EEEEECCCCCCHHH--HHHHHHHHH---cCCCEEEEEeCCCCcccc-HHHHHHHHHh------cCCCCEEEEeccCCCCH
Confidence 99999987655433 334344333 368999999999975321 1222 33332 233 5789999999999
Q ss_pred HHHHHHHHHHHHhc
Q 029517 162 KESVEWLVEVMERS 175 (192)
Q Consensus 162 ~e~~~~i~~~i~~~ 175 (192)
+++++++.+.+...
T Consensus 154 ~~L~~~i~~~l~~~ 167 (439)
T 1mky_A 154 DTMLETIIKKLEEK 167 (439)
T ss_dssp HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhcccc
Confidence 99999999988643
No 124
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=99.77 E-value=4.8e-19 Score=128.95 Aligned_cols=109 Identities=21% Similarity=0.311 Sum_probs=79.5
Q ss_pred CEEEEEEeCCC----------CcccHHHHHHhhhcC---CEEEEEEeCCCcccHHH--HHHHHHHHHhCCCCCCCcEEEE
Q 029517 55 NSKLVFWDLGG----------QPGLRSIWEKYYEEA---HAVVFVIDAACPSRFED--SKTALEKVLRNEDLQGAPLLIL 119 (192)
Q Consensus 55 ~~~~~i~D~~G----------~~~~~~~~~~~~~~~---d~ii~v~D~~~~~s~~~--~~~~~~~i~~~~~~~~~piiiv 119 (192)
+..+.+||||| ++.+...+..+++.+ +++++|+|+++..+... +..|+.. .+.|+++|
T Consensus 67 ~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~-------~~~p~i~v 139 (195)
T 3pqc_A 67 NSKYYFVDLPGYGYAKVSKKERMLWKRLVEDYFKNRWSLQMVFLLVDGRIPPQDSDLMMVEWMKS-------LNIPFTIV 139 (195)
T ss_dssp TTTEEEEECCCBSSSCCCHHHHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHH-------TTCCEEEE
T ss_pred CCcEEEEECCCCccccCChhhHHHHHHHHHHHHhcCcCceEEEEEecCCCCCCHHHHHHHHHHHH-------cCCCEEEE
Confidence 44688999999 667777888888876 99999999987644433 2333332 26899999
Q ss_pred EeCCCCCCCCCHH----HHHhHcCccccCCcceEEEEeeecCCCCHHHHHHHHHHHHHh
Q 029517 120 ANKQDLPDAVSAD----ELARYLDLKKLDERVCMFEAVSGYDGFGIKESVEWLVEVMER 174 (192)
Q Consensus 120 ~nK~Dl~~~~~~~----~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~e~~~~i~~~i~~ 174 (192)
+||+|+......+ ++.+.+. ....++++++||++|.||+++|++|.+.+.+
T Consensus 140 ~nK~Dl~~~~~~~~~~~~~~~~~~----~~~~~~~~~~Sa~~~~gv~~l~~~l~~~l~~ 194 (195)
T 3pqc_A 140 LTKMDKVKMSERAKKLEEHRKVFS----KYGEYTIIPTSSVTGEGISELLDLISTLLKE 194 (195)
T ss_dssp EECGGGSCGGGHHHHHHHHHHHHH----SSCCSCEEECCTTTCTTHHHHHHHHHHHHC-
T ss_pred EEChhcCChHHHHHHHHHHHHHHh----hcCCCceEEEecCCCCCHHHHHHHHHHHhhc
Confidence 9999997533332 3333333 1245789999999999999999999987753
No 125
>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum}
Probab=99.77 E-value=4.8e-19 Score=148.31 Aligned_cols=133 Identities=16% Similarity=0.274 Sum_probs=94.9
Q ss_pred CCCCCCCCCCcceEEEEEE------------ecCEEEEEEeCCCCcccHHHHHHhhhcCCEEEEEEeCCCcccHHHHHHH
Q 029517 34 GLPPDRIVPTVGLNIGRIE------------VSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTA 101 (192)
Q Consensus 34 ~~~~~~~~~T~g~~~~~~~------------~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ii~v~D~~~~~s~~~~~~~ 101 (192)
+.+...+.||+|.++.... ...+.+.+||+||++.+...+..+++.+|++|+|+|+++. +.+..|
T Consensus 64 ~~~~~~~~~t~g~~~~~~~~~~~~~v~~~~~~~~~~~~i~Dt~G~e~~~~~~~~~l~~~d~ii~V~D~s~~---~~~~~~ 140 (535)
T 3dpu_A 64 ETFDPKESQTHGLNVVTKQAPNIKGLENDDELKECLFHFWDFGGQEIMHASHQFFMTRSSVYMLLLDSRTD---SNKHYW 140 (535)
T ss_dssp -----------CCCEEEEEGGGSGGGTTCSTTTTCEEEEECCCSCCTTTTTCHHHHHSSEEEEEEECGGGG---GGHHHH
T ss_pred CCCCCCCCCccceEEEEeccccccceeecCCCceEEEEEEECCcHHHHHHHHHHHccCCcEEEEEEeCCCc---hhHHHH
Confidence 3445677889998877531 2368999999999999998899999999999999999865 445567
Q ss_pred HHHHHhCCCCCCCcEEEEEeCCCCCC--CCCHHHHHhHcCccccCCcceEEEEeeecCCCCHHHHHHHHHHHHHhcc
Q 029517 102 LEKVLRNEDLQGAPLLILANKQDLPD--AVSADELARYLDLKKLDERVCMFEAVSGYDGFGIKESVEWLVEVMERSK 176 (192)
Q Consensus 102 ~~~i~~~~~~~~~piiiv~nK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~e~~~~i~~~i~~~~ 176 (192)
+..+.... .+.|+++|+||+|+.. .+..+++.+.+. ..+.+++++||++|.||++++++|.+.+.+..
T Consensus 141 ~~~l~~~~--~~~pvilV~NK~Dl~~~~~v~~~~~~~~~~-----~~~~~~~~vSA~~g~gi~eL~~~l~~~~~~~~ 210 (535)
T 3dpu_A 141 LRHIEKYG--GKSPVIVVMNKIDENPSYNIEQKKINERFP-----AIENRFHRISCKNGDGVESIAKSLKSAVLHPD 210 (535)
T ss_dssp HHHHHHHS--SSCCEEEEECCTTTCTTCCCCHHHHHHHCG-----GGTTCEEECCC-----CTTHHHHHHHHHTCTT
T ss_pred HHHHHHhC--CCCCEEEEEECCCcccccccCHHHHHHHHH-----hcCCceEEEecCcccCHHHHHHHHHHHHhccc
Confidence 77777654 3689999999999975 456677777776 55678999999999999999999999887543
No 126
>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*
Probab=99.77 E-value=6.3e-19 Score=145.25 Aligned_cols=144 Identities=18% Similarity=0.155 Sum_probs=84.0
Q ss_pred ccccHHHHHHHHhhhhccCCCCCCCCCCCCcceEEEEEEecCEEEEEEeCCCCcccHHHHH--------HhhhcCCEEEE
Q 029517 14 TKTEFHTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPGLRSIWE--------KYYEEAHAVVF 85 (192)
Q Consensus 14 kst~~~~l~~~~~~~~~~~~~~~~~~~~~T~g~~~~~~~~~~~~~~i~D~~G~~~~~~~~~--------~~~~~~d~ii~ 85 (192)
|||++|+|+++-....+..++ .|.......+...++.+.+|||||+..+...+. .+++.+|++++
T Consensus 246 KSSLln~L~~~~~a~vs~~~g-------tT~d~~~~~i~~~g~~l~liDT~G~~~~~~~ve~~gi~~~~~~~~~aD~vl~ 318 (476)
T 3gee_A 246 KSTLLNTLLGQERAIVSHMPG-------TTRDYIEECFIHDKTMFRLTDTAGLREAGEEIEHEGIRRSRMKMAEADLILY 318 (476)
T ss_dssp HHHHHHHCC-------------------------CEEEEETTEEEEEEC--------------------CCCSSCSEEEE
T ss_pred HHHHHHHHhCCCCcccCCCCC-------ceEEEEEEEEEECCeEEEEEECCCCCcchhHHHHHHHHHHHhhcccCCEEEE
Confidence 788888887664332222222 223333445667789999999999877654433 36789999999
Q ss_pred EEeCCCcccHHHHHHHHHHHHhCCCCCCCcEEEEEeCCCCCCCCCHHHHHhHcCccccCCcceEEEEeeecCCCCHHHHH
Q 029517 86 VIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAVSADELARYLDLKKLDERVCMFEAVSGYDGFGIKESV 165 (192)
Q Consensus 86 v~D~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~e~~ 165 (192)
|+|++++.+++.+..+...+... .++|+++|+||+|+......+. .++.. ....+++++||++|.||++++
T Consensus 319 VvD~s~~~s~~~~~~~~~~l~~l---~~~piIvV~NK~Dl~~~~~~~~-~~l~~-----~~~~~~i~vSAktg~GI~eL~ 389 (476)
T 3gee_A 319 LLDLGTERLDDELTEIRELKAAH---PAAKFLTVANKLDRAANADALI-RAIAD-----GTGTEVIGISALNGDGIDTLK 389 (476)
T ss_dssp EEETTTCSSGGGHHHHHHHHHHC---TTSEEEEEEECTTSCTTTHHHH-HHHHH-----HHTSCEEECBTTTTBSHHHHH
T ss_pred EEECCCCcchhhhHHHHHHHHhc---CCCCEEEEEECcCCCCccchhH-HHHHh-----cCCCceEEEEECCCCCHHHHH
Confidence 99999988775433333322222 3689999999999986433221 11221 112578999999999999999
Q ss_pred HHHHHHHH
Q 029517 166 EWLVEVME 173 (192)
Q Consensus 166 ~~i~~~i~ 173 (192)
++|.+.+.
T Consensus 390 ~~i~~~~~ 397 (476)
T 3gee_A 390 QHMGDLVK 397 (476)
T ss_dssp HHHTHHHH
T ss_pred HHHHHHHh
Confidence 99999887
No 127
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=99.77 E-value=5.4e-19 Score=128.26 Aligned_cols=140 Identities=23% Similarity=0.224 Sum_probs=98.6
Q ss_pred ccccHHHHHHHHhhhhccCCCCCCCCCCCC--cceEEEEEEecCEEEEEEeCCCCcccH------HHHHHhhh--cCCEE
Q 029517 14 TKTEFHTLLEKLKSVYSNVEGLPPDRIVPT--VGLNIGRIEVSNSKLVFWDLGGQPGLR------SIWEKYYE--EAHAV 83 (192)
Q Consensus 14 kst~~~~l~~~~~~~~~~~~~~~~~~~~~T--~g~~~~~~~~~~~~~~i~D~~G~~~~~------~~~~~~~~--~~d~i 83 (192)
|||++|+|.+... ...+.|+ .......+...+..+.+|||||++.+. ..+..+++ .++++
T Consensus 20 KStL~~~l~~~~~----------~~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (188)
T 2wjg_A 20 KSTIFNALTGENV----------YIGNWPGVTVEKKEGEFEYNGEKFKVVDLPGVYSLTANSIDEIIARDYIINEKPDLV 89 (188)
T ss_dssp HHHHHHHHHTTCE----------EEEECTTSCCEEEEEEEEETTEEEEEEECCCCSCCSSSSHHHHHHHHHHHHHCCSEE
T ss_pred HHHHHHHHhCCCc----------cccCCCCeeccceEEEEEeCCcEEEEEECCCcCccccccHHHHHHHHHHhccCCCEE
Confidence 7888888765321 1112233 333444566778999999999998763 45566665 49999
Q ss_pred EEEEeCCCcccHHHHHHHHHHHHhCCCCCCCcEEEEEeCCCCCC--CCCHHHHHhHcCccccCCcceEEEEeeecCCCCH
Q 029517 84 VFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPD--AVSADELARYLDLKKLDERVCMFEAVSGYDGFGI 161 (192)
Q Consensus 84 i~v~D~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi 161 (192)
++|+|.++ ++....|+..+.. .+.|+++|+||+|+.. ... ++..++.+ ..+.+++++||++|.|+
T Consensus 90 i~v~d~~~---~~~~~~~~~~~~~----~~~piilv~nK~Dl~~~~~~~-~~~~~~~~-----~~~~~~~~~Sa~~~~~v 156 (188)
T 2wjg_A 90 VNIVDATA---LERNLYLTLQLME----MGANLLLALNKMDLAKSLGIE-IDVDKLEK-----ILGVKVVPLSAAKKMGI 156 (188)
T ss_dssp EEEEEGGG---HHHHHHHHHHHHT----TTCCEEEEEECHHHHHHTTCC-CCHHHHHH-----HHTSCEEECBGGGTBSH
T ss_pred EEEecchh---HHHHHHHHHHHHh----cCCCEEEEEEhhhccccccch-HHHHHHHH-----HhCCCeEEEEecCCCCH
Confidence 99999875 6666777777654 3689999999999854 111 22333332 23468999999999999
Q ss_pred HHHHHHHHHHHHhcc
Q 029517 162 KESVEWLVEVMERSK 176 (192)
Q Consensus 162 ~e~~~~i~~~i~~~~ 176 (192)
+++|+++.+.+....
T Consensus 157 ~~l~~~i~~~~~~~~ 171 (188)
T 2wjg_A 157 EELKKAISIAVKDKK 171 (188)
T ss_dssp HHHHHHHHHHHTTC-
T ss_pred HHHHHHHHHHHHhcc
Confidence 999999999887655
No 128
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=99.76 E-value=3.5e-18 Score=133.43 Aligned_cols=142 Identities=20% Similarity=0.159 Sum_probs=96.3
Q ss_pred ccccHHHHHHHHhhhhccCCCCCCCCCCCCcceEEEEEEecCEEEEEEeCCCCcc--------cHHHHHHhhhcCCEEEE
Q 029517 14 TKTEFHTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPG--------LRSIWEKYYEEAHAVVF 85 (192)
Q Consensus 14 kst~~~~l~~~~~~~~~~~~~~~~~~~~~T~g~~~~~~~~~~~~~~i~D~~G~~~--------~~~~~~~~~~~~d~ii~ 85 (192)
|||++|+|+++.....+..++. |.......+...+.++.+|||||..+ +......+++.+|++++
T Consensus 20 KSTLln~l~g~~~~ivs~~~~t-------Tr~~i~~i~~~~~~~l~l~DTpG~~~~~~~l~~~~~~~~~~~l~~ad~il~ 92 (301)
T 1wf3_A 20 KSTLLNNLLGVKVAPISPRPQT-------TRKRLRGILTEGRRQIVFVDTPGLHKPMDALGEFMDQEVYEALADVNAVVW 92 (301)
T ss_dssp HHHHHHHHHTSCCSCCCSSSCC-------CCSCEEEEEEETTEEEEEEECCCCCCCCSHHHHHHHHHHHHHTSSCSEEEE
T ss_pred HHHHHHHHhCCceeeecCCCCc-------eeEEEEEEEEeCCcEEEEecCccccchhhHHHHHHHHHHHHHHhcCCEEEE
Confidence 8999999986544322222221 22222223456688999999999865 45566778999999999
Q ss_pred EEeCCCcccHHHHHHHHH-HHHhCCCCCCCcEEEEEeCCCCCCCCC-H-HHHHhHcCccccCCcceEEEEeeecCCCCHH
Q 029517 86 VIDAACPSRFEDSKTALE-KVLRNEDLQGAPLLILANKQDLPDAVS-A-DELARYLDLKKLDERVCMFEAVSGYDGFGIK 162 (192)
Q Consensus 86 v~D~~~~~s~~~~~~~~~-~i~~~~~~~~~piiiv~nK~Dl~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~ 162 (192)
|+|+++..+... .|+. .+.... .+.|+++|+||+|+..... . +.+.++ ....+++++||++|.|++
T Consensus 93 VvD~~~~~~~~~--~~i~~~l~~~~--~~~p~ilV~NK~Dl~~~~~~~~~~~~~~-------~~~~~~~~iSA~~g~gv~ 161 (301)
T 1wf3_A 93 VVDLRHPPTPED--ELVARALKPLV--GKVPILLVGNKLDAAKYPEEAMKAYHEL-------LPEAEPRMLSALDERQVA 161 (301)
T ss_dssp EEETTSCCCHHH--HHHHHHHGGGT--TTSCEEEEEECGGGCSSHHHHHHHHHHT-------STTSEEEECCTTCHHHHH
T ss_pred EEECCCCCChHH--HHHHHHHHhhc--CCCCEEEEEECcccCCchHHHHHHHHHh-------cCcCcEEEEeCCCCCCHH
Confidence 999988755443 4543 333321 3689999999999875322 1 122222 123478999999999999
Q ss_pred HHHHHHHHHHH
Q 029517 163 ESVEWLVEVME 173 (192)
Q Consensus 163 e~~~~i~~~i~ 173 (192)
+++++|.+.+.
T Consensus 162 ~l~~~l~~~l~ 172 (301)
T 1wf3_A 162 ELKADLLALMP 172 (301)
T ss_dssp HHHHHHHTTCC
T ss_pred HHHHHHHHhcc
Confidence 99999987654
No 129
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=99.76 E-value=1.1e-18 Score=143.42 Aligned_cols=151 Identities=15% Similarity=0.122 Sum_probs=98.9
Q ss_pred ccccHHHHHHHHhhhhccCCCCCCCCCCCCcceEEEEEEecCEEEEEEeCCC----------CcccHHHHH-HhhhcCCE
Q 029517 14 TKTEFHTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGG----------QPGLRSIWE-KYYEEAHA 82 (192)
Q Consensus 14 kst~~~~l~~~~~~~~~~~~~~~~~~~~~T~g~~~~~~~~~~~~~~i~D~~G----------~~~~~~~~~-~~~~~~d~ 82 (192)
|||++|+|++.-.......++.+ .......+...+..+.+||||| ++.|..... .+++.+|+
T Consensus 208 KSslin~l~~~~~~~~~~~~gtt-------~~~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~e~~~~~~~~~~~~~ad~ 280 (456)
T 4dcu_A 208 KSSLVNAMLGEERVIVSNVAGTT-------RDAVDTSFTYNQQEFVIVDTAGMRKKGKVYETTEKYSVLRALKAIDRSEV 280 (456)
T ss_dssp HHHHHHHHHTSTTEEECC-------------CTTSEEEEETTEEEEETTGGGTTTBTTBCCCCSHHHHHHHHHHHHHCSE
T ss_pred HHHHHHHHhCCCccccCCCCCeE-------EEEEEEEEEECCceEEEEECCCCCcCcccchHHHHHHHHHHHHHHhhCCE
Confidence 67777777644322222222222 2222334666777999999999 677777654 47899999
Q ss_pred EEEEEeCCCcccHHHHHHHHHHHHhCCCCCCCcEEEEEeCCCCCC--CCCHHHHHhHcCccccCCcceEEEEeeecCCCC
Q 029517 83 VVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPD--AVSADELARYLDLKKLDERVCMFEAVSGYDGFG 160 (192)
Q Consensus 83 ii~v~D~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~g 160 (192)
+++|+|+++..+-. -..|...+.. .++|+++|+||+|+.+ ....+++.+.+..........+++++||++|.|
T Consensus 281 ~llviD~~~~~~~~-~~~~~~~~~~----~~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~g 355 (456)
T 4dcu_A 281 VAVVLDGEEGIIEQ-DKRIAGYAHE----AGKAVVIVVNKWDAVDKDESTMKEFEENIRDHFQFLDYAPILFMSALTKKR 355 (456)
T ss_dssp EEEEEETTTCCCHH-HHHHHHHHHH----TTCEEEEEEECGGGSCCCSSHHHHHHHHHHHHCGGGTTSCEEECCTTTCTT
T ss_pred EEEEEeCCCCcCHH-HHHHHHHHHH----cCCCEEEEEEChhcCCCchHHHHHHHHHHHHhcccCCCCCEEEEcCCCCcC
Confidence 99999998764432 2234333333 4699999999999975 334455555544111112357899999999999
Q ss_pred HHHHHHHHHHHHHhcc
Q 029517 161 IKESVEWLVEVMERSK 176 (192)
Q Consensus 161 i~e~~~~i~~~i~~~~ 176 (192)
|+++|+++.+.+....
T Consensus 356 v~~l~~~i~~~~~~~~ 371 (456)
T 4dcu_A 356 IHTLMPAIIKASENHS 371 (456)
T ss_dssp GGGHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHhc
Confidence 9999999998876543
No 130
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=99.76 E-value=3.1e-19 Score=139.45 Aligned_cols=127 Identities=16% Similarity=0.130 Sum_probs=97.7
Q ss_pred CCCC-CCCCCCcceEEEEE-EecCEEEEEEeCCCCcccHHHHHHhhhcCCEEEEEEeCCCcc-cHHHHHHHHHHHHhCCC
Q 029517 34 GLPP-DRIVPTVGLNIGRI-EVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPS-RFEDSKTALEKVLRNED 110 (192)
Q Consensus 34 ~~~~-~~~~~T~g~~~~~~-~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ii~v~D~~~~~-s~~~~~~~~~~i~~~~~ 110 (192)
+.|. ..|.||+|..+... ..+. ++++||+ +++|+.++..+++++|++|+|+|++++. ++..+..|+..+..
T Consensus 40 ~~f~~~~~~pTiGd~~~~~~~~~~-~~~iwD~--qer~~~l~~~~~~~ad~vilV~D~~~~~~s~~~l~~~l~~~~~--- 113 (301)
T 1u0l_A 40 GKFRLQNLKIYVGDRVEYTPDETG-SGVIENV--LHRKNLLTKPHVANVDQVILVVTVKMPETSTYIIDKFLVLAEK--- 113 (301)
T ss_dssp GGGTTTTCCCCTTCEEEEECCCSS-SEEEEEE--CCCSCEETTTTEESCCEEEEEECSSTTCCCHHHHHHHHHHHHH---
T ss_pred ccccccCCCCCCccEEEEEEcCCC-eEEEEEE--ccccceeeccccccCCEEEEEEeCCCCCCCHHHHHHHHHHHHH---
Confidence 5666 78899999765522 1223 7999999 8999989999999999999999999887 78888999887654
Q ss_pred CCCCcEEEEEeCCCCCCCCCHHHHHhHcCccccCCcceEEEEeeecCCCCHHHHHHHHHH
Q 029517 111 LQGAPLLILANKQDLPDAVSADELARYLDLKKLDERVCMFEAVSGYDGFGIKESVEWLVE 170 (192)
Q Consensus 111 ~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~e~~~~i~~ 170 (192)
.++|+++|+||+|+.+....+++.+++.. .... ++++++||++|.||+++|..+..
T Consensus 114 -~~~piilv~NK~DL~~~~~v~~~~~~~~~--~~~~-~~~~~~SAktg~gv~~lf~~l~g 169 (301)
T 1u0l_A 114 -NELETVMVINKMDLYDEDDLRKVRELEEI--YSGL-YPIVKTSAKTGMGIEELKEYLKG 169 (301)
T ss_dssp -TTCEEEEEECCGGGCCHHHHHHHHHHHHH--HTTT-SCEEECCTTTCTTHHHHHHHHSS
T ss_pred -CCCCEEEEEeHHHcCCchhHHHHHHHHHH--Hhhh-CcEEEEECCCCcCHHHHHHHhcC
Confidence 37999999999999753221233444431 0122 78999999999999999988754
No 131
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=99.75 E-value=1.1e-18 Score=142.67 Aligned_cols=150 Identities=16% Similarity=0.123 Sum_probs=99.9
Q ss_pred ccccHHHHHHHHhhhhccCCCCCCCCCCCCcceEEEEEEecCEEEEEEeCCCC----------cccHHHHH-HhhhcCCE
Q 029517 14 TKTEFHTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQ----------PGLRSIWE-KYYEEAHA 82 (192)
Q Consensus 14 kst~~~~l~~~~~~~~~~~~~~~~~~~~~T~g~~~~~~~~~~~~~~i~D~~G~----------~~~~~~~~-~~~~~~d~ 82 (192)
|||++|+|++.........++ .|.......+...+..+.+|||||+ +.|..... .+++.+|+
T Consensus 188 KSSLin~l~~~~~~~~~~~~g-------tT~d~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~e~~~~~~~~~~~~~ad~ 260 (436)
T 2hjg_A 188 KSSLVNAMLGEERVIVSNVAG-------TTRDAVDTSFTYNQQEFVIVDTAGMRKKGKVYETTEKYSVLRALKAIDRSEV 260 (436)
T ss_dssp HHHHHHHHHTSTTEEEC----------------CCEEEEETTEEEEETTHHHHTCBTTBCCCCSHHHHHHHHHHHHHCSE
T ss_pred HHHHHHHHhCCCceeecCCCC-------ceeeeeEEEEEECCeEEEEEECCCcCcCccccchHHHHHHHHHHHHHHhCCE
Confidence 788888887653322222222 2222223456666778999999997 55655543 57899999
Q ss_pred EEEEEeCCCcccHHHHHHHHHHHHhCCCCCCCcEEEEEeCCCCCCCCC--HHHHHhHcCccccCCcceEEEEeeecCCCC
Q 029517 83 VVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAVS--ADELARYLDLKKLDERVCMFEAVSGYDGFG 160 (192)
Q Consensus 83 ii~v~D~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~g 160 (192)
+++|+|++++.+++.. .|+..+.. .++|+++|+||+|+.+... .+++.+.+........+.+++++||++|.|
T Consensus 261 ~llv~D~~~~~s~~~~-~~~~~~~~----~~~~iiiv~NK~Dl~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~SA~tg~~ 335 (436)
T 2hjg_A 261 VAVVLDGEEGIIEQDK-RIAGYAHE----AGKAVVIVVNKWDAVDKDESTMKEFEENIRDHFQFLDYAPILFMSALTKKR 335 (436)
T ss_dssp EEEEEETTTCCCHHHH-HHHHHHHH----TTCEEEEEEECGGGSCCCTTHHHHHHHHHHHHCGGGTTSCEEECCTTTCTT
T ss_pred EEEEEcCCcCCcHHHH-HHHHHHHH----cCCcEEEEEECccCCCcchHHHHHHHHHHHHhcccCCCCCEEEEecccCCC
Confidence 9999999998887765 45555543 3699999999999976322 333332222110113367899999999999
Q ss_pred HHHHHHHHHHHHHhc
Q 029517 161 IKESVEWLVEVMERS 175 (192)
Q Consensus 161 i~e~~~~i~~~i~~~ 175 (192)
|+++|+++.+.+...
T Consensus 336 v~~l~~~i~~~~~~~ 350 (436)
T 2hjg_A 336 IHTLMPAIIKASENH 350 (436)
T ss_dssp GGGHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHh
Confidence 999999999887653
No 132
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=99.75 E-value=3.3e-18 Score=130.80 Aligned_cols=137 Identities=23% Similarity=0.236 Sum_probs=96.3
Q ss_pred ccccHHHHHHHHhhhhccCCCCCCCCCCCCcceEEEEEEecCEEEEEEeCCCCcccHH------HHHHhh--hcCCEEEE
Q 029517 14 TKTEFHTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPGLRS------IWEKYY--EEAHAVVF 85 (192)
Q Consensus 14 kst~~~~l~~~~~~~~~~~~~~~~~~~~~T~g~~~~~~~~~~~~~~i~D~~G~~~~~~------~~~~~~--~~~d~ii~ 85 (192)
|||++|+|++.... +.+.+ ..|.......+...+..+.+|||||+..+.. ....++ ..+|++++
T Consensus 18 KTsL~n~l~g~~~~----~~~~p----g~tv~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~e~v~~~~~~~~~~d~ii~ 89 (258)
T 3a1s_A 18 KTSLFNALTGTKQY----VANWP----GVTVEKKEGVFTYKGYTINLIDLPGTYSLGYSSIDEKIARDYLLKGDADLVIL 89 (258)
T ss_dssp HHHHHHHHHTTCEE----EEECT----TSCCEEEEEEEEETTEEEEEEECCCCSSCCSSSHHHHHHHHHHHHSCCSEEEE
T ss_pred HHHHHHHHHCCCCc----ccCCC----CceEEEEEEEEEECCeEEEEEECCCcCccCCCCHHHHHHHHHHhhcCCCEEEE
Confidence 78888888754321 11111 3344444556777789999999999876643 234555 58999999
Q ss_pred EEeCCCcccHHHHHHHHHHHHhCCCCCCCcEEEEEeCCCCCC--C--CCHHHHHhHcCccccCCcceEEEEeeecCCCCH
Q 029517 86 VIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPD--A--VSADELARYLDLKKLDERVCMFEAVSGYDGFGI 161 (192)
Q Consensus 86 v~D~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~--~--~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi 161 (192)
|+|+++.++ ...|...+... ++|+++++||+|+.. . ...+.+.+. .+++++++||++|.|+
T Consensus 90 V~D~t~~~~---~~~~~~~l~~~----~~pvilv~NK~Dl~~~~~i~~~~~~l~~~--------lg~~vi~~SA~~g~gi 154 (258)
T 3a1s_A 90 VADSVNPEQ---SLYLLLEILEM----EKKVILAMTAIDEAKKTGMKIDRYELQKH--------LGIPVVFTSSVTGEGL 154 (258)
T ss_dssp EEETTSCHH---HHHHHHHHHTT----TCCEEEEEECHHHHHHTTCCBCHHHHHHH--------HCSCEEECCTTTCTTH
T ss_pred EeCCCchhh---HHHHHHHHHhc----CCCEEEEEECcCCCCccchHHHHHHHHHH--------cCCCEEEEEeeCCcCH
Confidence 999998643 34466666543 699999999999854 1 222333333 3579999999999999
Q ss_pred HHHHHHHHHHHH
Q 029517 162 KESVEWLVEVME 173 (192)
Q Consensus 162 ~e~~~~i~~~i~ 173 (192)
+++|+++.+.+.
T Consensus 155 ~el~~~i~~~~~ 166 (258)
T 3a1s_A 155 EELKEKIVEYAQ 166 (258)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhh
Confidence 999999998765
No 133
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=99.75 E-value=2e-18 Score=131.93 Aligned_cols=136 Identities=21% Similarity=0.245 Sum_probs=94.7
Q ss_pred hccccHHHHHHHHhhhhccCCCCCCCCCCCCcceEEEEEEecCEEEEEEeCCCCcccHH----------HHHHhh--hcC
Q 029517 13 FTKTEFHTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPGLRS----------IWEKYY--EEA 80 (192)
Q Consensus 13 ~kst~~~~l~~~~~~~~~~~~~~~~~~~~~T~g~~~~~~~~~~~~~~i~D~~G~~~~~~----------~~~~~~--~~~ 80 (192)
=|||++|+|++... .+.+. ...|.......+...+..+.+|||||+..+.. ....++ +++
T Consensus 13 GKSTL~n~L~g~~~----~v~~~----pg~Tv~~~~~~~~~~~~~~~lvDtpG~~~~~~~~~~~~~~e~i~~~~~~~~~~ 84 (256)
T 3iby_A 13 GKTTLFNALTNANQ----RVGNW----PGVTVEKKTGEFLLGEHLIEITDLPGVYSLVANAEGISQDEQIAAQSVIDLEY 84 (256)
T ss_dssp SHHHHHHHHHTTSE----EEEEC----TTSSSEEEEEEEEETTEEEEEEECCCCSSCC------CHHHHHHHHHHHHSCC
T ss_pred CHHHHHHHHHCCCC----CccCC----CCceEEEEEEEEEECCeEEEEEeCCCcccccccccCCCHHHHHHHHHHhhCCC
Confidence 37888888876532 11111 13344445556777788999999999876643 455666 889
Q ss_pred CEEEEEEeCCCcccHHHHHHHHHHHHhCCCCCCCcEEEEEeCCCCCCC----CCHHHHHhHcCccccCCcceEEEEeeec
Q 029517 81 HAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDA----VSADELARYLDLKKLDERVCMFEAVSGY 156 (192)
Q Consensus 81 d~ii~v~D~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~~----~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 156 (192)
|++|+|+|+++.++.. .+...+.. .++|+++|+||+|+... ...+.+.+.+ +++++++||+
T Consensus 85 d~vi~VvDas~~~~~~---~l~~~l~~----~~~pvilv~NK~Dl~~~~~~~~~~~~l~~~l--------g~~vi~~SA~ 149 (256)
T 3iby_A 85 DCIINVIDACHLERHL---YLTSQLFE----LGKPVVVALNMMDIAEHRGISIDTEKLESLL--------GCSVIPIQAH 149 (256)
T ss_dssp SEEEEEEEGGGHHHHH---HHHHHHTT----SCSCEEEEEECHHHHHHTTCEECHHHHHHHH--------CSCEEECBGG
T ss_pred CEEEEEeeCCCchhHH---HHHHHHHH----cCCCEEEEEEChhcCCcCCcHHHHHHHHHHc--------CCCEEEEECC
Confidence 9999999998854333 34334433 26899999999998542 2233333333 5799999999
Q ss_pred CCCCHHHHHHHHHHH
Q 029517 157 DGFGIKESVEWLVEV 171 (192)
Q Consensus 157 ~~~gi~e~~~~i~~~ 171 (192)
+|.|++++|++|.+.
T Consensus 150 ~g~gi~el~~~i~~~ 164 (256)
T 3iby_A 150 KNIGIPALQQSLLHC 164 (256)
T ss_dssp GTBSHHHHHHHHHTC
T ss_pred CCCCHHHHHHHHHhh
Confidence 999999999999875
No 134
>1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=99.75 E-value=6.3e-18 Score=137.20 Aligned_cols=114 Identities=16% Similarity=0.137 Sum_probs=77.6
Q ss_pred EEEEEEeCCCCcccHHHHHHhhhcCCEEEEEEeCCCcccHHHHHHHHHHHHhCCCCCCCcEEEEEeCCCCCCCC----CH
Q 029517 56 SKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAV----SA 131 (192)
Q Consensus 56 ~~~~i~D~~G~~~~~~~~~~~~~~~d~ii~v~D~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~~~----~~ 131 (192)
..+.+||||||++|.......+..+|++|+|+|++++.......+.+..+... ...|+++++||+|+.... ..
T Consensus 81 ~~i~iiDtPGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~~~~~l---~~~~iivv~NK~Dl~~~~~~~~~~ 157 (408)
T 1s0u_A 81 RRVSFVDSPGHETLMATMLSGASLMDGAILVIAANEPCPQPQTKEHLMALEIL---GIDKIIIVQNKIDLVDEKQAEENY 157 (408)
T ss_dssp EEEEEEECSSHHHHHHHHHTTCSCCSEEEEEEETTSCSSCHHHHHHHHHHHHT---TCCCEEEEEECTTSSCTTTTTTHH
T ss_pred cEEEEEECCCHHHHHHHHHHhHhhCCEEEEEEECCCCCCCchhHHHHHHHHHc---CCCeEEEEEEccCCCCHHHHHHHH
Confidence 78999999999999888777788899999999998653222222333322222 235899999999997632 34
Q ss_pred HHHHhHcCccccCCcceEEEEeeecCCCCHHHHHHHHHHHHHh
Q 029517 132 DELARYLDLKKLDERVCMFEAVSGYDGFGIKESVEWLVEVMER 174 (192)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~e~~~~i~~~i~~ 174 (192)
+++.+++.. ......+++++||++|.||++++++|.+.+..
T Consensus 158 ~~i~~~l~~--~~~~~~~~i~vSA~~g~gi~~L~~~l~~~i~~ 198 (408)
T 1s0u_A 158 EQIKEFVKG--TIAENAPIIPISAHHEANIDVLLKAIQDFIPT 198 (408)
T ss_dssp HHHHHHHTT--STTTTCCEEEC------CHHHHHHHHHHHSCC
T ss_pred HHHHHHHhh--cCCCCCeEEEeeCCCCCCHHHHHHHHHHhCCC
Confidence 556666651 11246789999999999999999999987654
No 135
>3l82_B F-box only protein 4; TRFH domain, helix, GTPase domain, acetylation, ADP- ribosylation, alternative splicing, cell cycle, cell division; 2.40A {Homo sapiens}
Probab=99.73 E-value=6.1e-18 Score=123.64 Aligned_cols=112 Identities=20% Similarity=0.269 Sum_probs=85.3
Q ss_pred eCCCCcccHHHHHHhhhcCCEEEEEEeCCCcccHHHHHHHH---HHHHhCC-CCCCCcEEEEEeCC-CCCCCCCHHHHHh
Q 029517 62 DLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTAL---EKVLRNE-DLQGAPLLILANKQ-DLPDAVSADELAR 136 (192)
Q Consensus 62 D~~G~~~~~~~~~~~~~~~d~ii~v~D~~~~~s~~~~~~~~---~~i~~~~-~~~~~piiiv~nK~-Dl~~~~~~~~~~~ 136 (192)
|.+||+.+++.|..|++++|++|||+|++|.+.++ .+..+ ..++... ...+.|++|++||. |++.+.+..++.+
T Consensus 108 ~~GGQ~klRplWr~Yy~~TdglIfVVDSsD~~R~e-ak~EL~eL~~mL~ee~~L~gapLLVlANKqqDlp~Ams~~EI~e 186 (227)
T 3l82_B 108 QQGSRYSVIPQIQKVCEVVDGFIYVANAEAHKRHE-WQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDVKRMPCFYLAH 186 (227)
T ss_dssp ---------CCHHHHHHHCSEEEEEEECBTTCCCC-HHHHHHHHHHHSCTTSSCSCSCEEEEEEESSTTSCBCCHHHHHH
T ss_pred ccCcHHHHHHHHHHHhcCCCEEEEEeccccHhHHH-HHHHHHHHHHHhcchhhhCCCeEEEEeCCCcCccCCCCHHHHHH
Confidence 34489999999999999999999999999887654 55554 3333332 23689999999995 8888999999999
Q ss_pred HcCccccCCcceEEEEeeecCCCCHHHHHHHHHHHHHhc
Q 029517 137 YLDLKKLDERVCMFEAVSGYDGFGIKESVEWLVEVMERS 175 (192)
Q Consensus 137 ~~~~~~~~~~~~~~~~~Sa~~~~gi~e~~~~i~~~i~~~ 175 (192)
.+.+..+ .+.+.++.|||++|+|+.|.++||++.+.+.
T Consensus 187 ~L~L~~l-~R~W~Iq~csA~TGeGL~EGLdWL~~~l~~k 224 (227)
T 3l82_B 187 ELHLNLL-NHPWLVQDTEAETLTGFLNGIEWILEEVESK 224 (227)
T ss_dssp HTTGGGG-CSCEEEEEEETTTCTTHHHHHHHHTTTTTTC
T ss_pred HcCCcCC-CCCEEEEEeECCCCcCHHHHHHHHHHHHHhh
Confidence 9998776 4789999999999999999999998876543
No 136
>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana}
Probab=99.73 E-value=2.1e-18 Score=140.10 Aligned_cols=144 Identities=14% Similarity=0.117 Sum_probs=98.5
Q ss_pred hccccHHHHHHHHhhhhccCCCCCCCCCCCCcceEEEEEEecCE-EEEEEeCCCCcccHH-------HHHHhhhcCCEEE
Q 029517 13 FTKTEFHTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNS-KLVFWDLGGQPGLRS-------IWEKYYEEAHAVV 84 (192)
Q Consensus 13 ~kst~~~~l~~~~~~~~~~~~~~~~~~~~~T~g~~~~~~~~~~~-~~~i~D~~G~~~~~~-------~~~~~~~~~d~ii 84 (192)
=|||++|+|+++-...... ....|.......+..... .+.+|||||++++.. ....+++.+|++|
T Consensus 46 GKSTLin~L~~~~~~~~~~-------~~gtT~d~~~~~~~~~~~~~l~liDTpG~~d~~~l~~~~~~~~~~~l~~aD~vl 118 (423)
T 3qq5_A 46 GKSSFMNALVGQNVSIVSD-------YAGTTTDPVYKSMELHPIGPVTLVDTPGLDDVGELGRLRVEKARRVFYRADCGI 118 (423)
T ss_dssp TTTTTTTSSCC--------------------CCCCEEEEEETTTEEEEEEECSSTTCCCTTCCCCHHHHHHHHTSCSEEE
T ss_pred CHHHHHHHHHcCCCCccCC-------CCCeeeeeEEEEEEECCCCeEEEEECcCCCcccchhHHHHHHHHHHHhcCCEEE
Confidence 3889988887654321111 223344444555665544 899999999876532 2556889999999
Q ss_pred EEEeCCCcccHHHHHHHHHHHHhCCCCCCCcEEEEEeCCCCCCCCCHHHHHhHcCccccCCcceEEEEeeecCCCCHHHH
Q 029517 85 FVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAVSADELARYLDLKKLDERVCMFEAVSGYDGFGIKES 164 (192)
Q Consensus 85 ~v~D~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~e~ 164 (192)
+|+|++.. .....|+..+.+. ++|+++|+||+|+......+...++.. ..+++++++||++|.|++++
T Consensus 119 lVvD~~~~---~~~~~~l~~l~~~----~~piIvV~NK~Dl~~~~~~~~~~~l~~-----~~g~~v~~vSAktg~gI~eL 186 (423)
T 3qq5_A 119 LVTDSAPT---PYEDDVVNLFKEM----EIPFVVVVNKIDVLGEKAEELKGLYES-----RYEAKVLLVSALQKKGFDDI 186 (423)
T ss_dssp EECSSSCC---HHHHHHHHHHHHT----TCCEEEECCCCTTTTCCCTHHHHHSSC-----CTTCCCCCCSSCCTTSTTTH
T ss_pred EEEeCCCh---HHHHHHHHHHHhc----CCCEEEEEeCcCCCCccHHHHHHHHHH-----HcCCCEEEEECCCCCCHHHH
Confidence 99999433 2334566666554 689999999999987554445555544 55689999999999999999
Q ss_pred HHHHHHHHHhc
Q 029517 165 VEWLVEVMERS 175 (192)
Q Consensus 165 ~~~i~~~i~~~ 175 (192)
|++|.+.+...
T Consensus 187 ~~~L~~~l~~~ 197 (423)
T 3qq5_A 187 GKTISEILPGD 197 (423)
T ss_dssp HHHHHHHSCCC
T ss_pred HHHHHHhhhhh
Confidence 99999988543
No 137
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=99.73 E-value=8.8e-18 Score=134.10 Aligned_cols=128 Identities=19% Similarity=0.266 Sum_probs=96.1
Q ss_pred CCCcceEEEEEEecCEEEEEEeCCCCcccH---------HHHHHhhhcCCEEEEEEeCCCcc--cHHHHHHHHHHHHhCC
Q 029517 41 VPTVGLNIGRIEVSNSKLVFWDLGGQPGLR---------SIWEKYYEEAHAVVFVIDAACPS--RFEDSKTALEKVLRNE 109 (192)
Q Consensus 41 ~~T~g~~~~~~~~~~~~~~i~D~~G~~~~~---------~~~~~~~~~~d~ii~v~D~~~~~--s~~~~~~~~~~i~~~~ 109 (192)
.+|.+.....+......+.+|||||..... .....+...+|++++|+|+++.. +++....|+..+....
T Consensus 199 ~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~ad~illV~D~s~~~~~~~~~~~~~~~~i~~~~ 278 (357)
T 2e87_A 199 FTTRGINVGQFEDGYFRYQIIDTPGLLDRPISERNEIEKQAILALRYLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEF 278 (357)
T ss_dssp TCSSCEEEEEEEETTEEEEEEECTTTSSSCSTTSCHHHHHHHHGGGGTCSEEEEEECTTCTTSSCHHHHHHHHHHHHHHT
T ss_pred CeeeceeEEEEEecCceEEEEeCCCccccchhhhhHHHHHHHHHHHhcCCEEEEEEeCCccccCCHHHHHHHHHHHHHhc
Confidence 456666666777778899999999974321 12223445699999999998876 7888888888887753
Q ss_pred CCCCCcEEEEEeCCCCCCCCCHHHHHhHcCccccCCcceEEEEeeecCCCCHHHHHHHHHHHHHhc
Q 029517 110 DLQGAPLLILANKQDLPDAVSADELARYLDLKKLDERVCMFEAVSGYDGFGIKESVEWLVEVMERS 175 (192)
Q Consensus 110 ~~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~e~~~~i~~~i~~~ 175 (192)
.+.|+++|+||+|+......+++.+.+. ..+.+++++||++|.||++++++|.+.+...
T Consensus 279 --~~~piilV~NK~Dl~~~~~~~~~~~~~~-----~~~~~~~~iSA~~g~gi~~l~~~i~~~l~~~ 337 (357)
T 2e87_A 279 --KDLPFLVVINKIDVADEENIKRLEKFVK-----EKGLNPIKISALKGTGIDLVKEEIIKTLRPL 337 (357)
T ss_dssp --TTSCEEEEECCTTTCCHHHHHHHHHHHH-----HTTCCCEECBTTTTBTHHHHHHHHHHHHHHH
T ss_pred --CCCCEEEEEECcccCChHHHHHHHHHHH-----hcCCCeEEEeCCCCcCHHHHHHHHHHHHHHH
Confidence 2799999999999976333344444443 3457899999999999999999999988654
No 138
>3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C*
Probab=99.73 E-value=4.3e-17 Score=137.44 Aligned_cols=111 Identities=18% Similarity=0.214 Sum_probs=88.0
Q ss_pred CEEEEEEeCCCCcccHHHHHHhhhcCCEEEEEEeCCCcccHHHHHHHHHHHHhCCCCCCCcEEEEEeCCCCCCCCCH---
Q 029517 55 NSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAVSA--- 131 (192)
Q Consensus 55 ~~~~~i~D~~G~~~~~~~~~~~~~~~d~ii~v~D~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~~~~~--- 131 (192)
.+.+++|||||+.+|...+..+++.+|++|+|+|+++..+.+....|..... .++|+++++||+|+......
T Consensus 70 ~~~l~liDTPGh~dF~~ev~~~l~~aD~aILVVDa~~gv~~qt~~~~~~~~~-----~~ipiIvViNKiDl~~a~~~~v~ 144 (599)
T 3cb4_D 70 TYQLNFIDTPGHVDFSYEVSRSLAACEGALLVVDAGQGVEAQTLANCYTAME-----MDLEVVPVLNKIDLPAADPERVA 144 (599)
T ss_dssp EEEEEEEECCCCGGGHHHHHHHHHHCSEEEEEEETTTCCCTHHHHHHHHHHH-----TTCEEEEEEECTTSTTCCHHHHH
T ss_pred eEEEEEEECCCchHHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHH-----CCCCEEEeeeccCcccccHHHHH
Confidence 4789999999999999999999999999999999998877777766655432 36899999999999865322
Q ss_pred HHHHhHcCccccCCcceEEEEeeecCCCCHHHHHHHHHHHHHhc
Q 029517 132 DELARYLDLKKLDERVCMFEAVSGYDGFGIKESVEWLVEVMERS 175 (192)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~e~~~~i~~~i~~~ 175 (192)
+++.+.+. .....++++||++|.||++++++|.+.+...
T Consensus 145 ~ei~~~lg-----~~~~~vi~vSAktg~GI~~Ll~~I~~~lp~p 183 (599)
T 3cb4_D 145 EEIEDIVG-----IDATDAVRCSAKTGVGVQDVLERLVRDIPPP 183 (599)
T ss_dssp HHHHHHTC-----CCCTTCEEECTTTCTTHHHHHHHHHHHSCCC
T ss_pred HHHHHHhC-----CCcceEEEeecccCCCchhHHHHHhhcCCCc
Confidence 22333332 2223589999999999999999999877644
No 139
>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8
Probab=99.73 E-value=7.8e-18 Score=133.41 Aligned_cols=150 Identities=21% Similarity=0.284 Sum_probs=103.4
Q ss_pred ccccHHHHHHHHhhhhccCCCCCCCCCCCCcceEEEEEEecC-EEEEEEeCCCCcc----c---HHHHHHhhhcCCEEEE
Q 029517 14 TKTEFHTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSN-SKLVFWDLGGQPG----L---RSIWEKYYEEAHAVVF 85 (192)
Q Consensus 14 kst~~~~l~~~~~~~~~~~~~~~~~~~~~T~g~~~~~~~~~~-~~~~i~D~~G~~~----~---~~~~~~~~~~~d~ii~ 85 (192)
|||++|+| ++..+.+.+++.++..|+++ .+...+ ..+.+|||||... + ......+++.++++|+
T Consensus 171 KSTLln~L----~~~~~~i~~~~ftTl~p~~g----~v~~~~~~~~~l~DtPG~i~~a~~~~~l~~~fl~~i~~~d~ll~ 242 (342)
T 1lnz_A 171 KSTLLSVV----SSAKPKIADYHFTTLVPNLG----MVETDDGRSFVMADLPGLIEGAHQGVGLGHQFLRHIERTRVIVH 242 (342)
T ss_dssp HHHHHHHS----EEECCEESSTTSSCCCCCEE----EEECSSSCEEEEEEHHHHHHHTTCTTTTHHHHHHHHHHCCEEEE
T ss_pred HHHHHHHH----HcCCCccccCCccccCceEE----EEEeCCCceEEEecCCCCcccccccchhHHHHHHHHHhccEEEE
Confidence 55555554 44444455555455555544 455554 7899999999532 2 2233334566999999
Q ss_pred EEeCCC---cccHHHHHHHHHHHHhCCC-CCCCcEEEEEeCCCCCCCC-CHHHHHhHcCccccCCcceEEEEeeecCCCC
Q 029517 86 VIDAAC---PSRFEDSKTALEKVLRNED-LQGAPLLILANKQDLPDAV-SADELARYLDLKKLDERVCMFEAVSGYDGFG 160 (192)
Q Consensus 86 v~D~~~---~~s~~~~~~~~~~i~~~~~-~~~~piiiv~nK~Dl~~~~-~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~g 160 (192)
|+|+++ .++++.+..|...+..... ..++|+++|+||+|+.... ..+++.+.+. . ..+++++||+++.|
T Consensus 243 VvD~s~~~~~~~~~~~~~~~~eL~~~~~~l~~~p~ilV~NK~Dl~~~~e~~~~l~~~l~-----~-~~~v~~iSA~tg~g 316 (342)
T 1lnz_A 243 VIDMSGLEGRDPYDDYLTINQELSEYNLRLTERPQIIVANKMDMPEAAENLEAFKEKLT-----D-DYPVFPISAVTREG 316 (342)
T ss_dssp EEESSCSSCCCHHHHHHHHHHHHHHSCSSTTTSCBCBEEECTTSTTHHHHHHHHHHHCC-----S-CCCBCCCSSCCSST
T ss_pred EEECCcccccChHHHHHHHHHHHHHhhhhhcCCCEEEEEECccCCCCHHHHHHHHHHhh-----c-CCCEEEEECCCCcC
Confidence 999998 7889988888888877532 3579999999999987521 1122333332 1 16789999999999
Q ss_pred HHHHHHHHHHHHHhcch
Q 029517 161 IKESVEWLVEVMERSKR 177 (192)
Q Consensus 161 i~e~~~~i~~~i~~~~~ 177 (192)
+++++++|.+.+.+...
T Consensus 317 i~eL~~~l~~~l~~~~~ 333 (342)
T 1lnz_A 317 LRELLFEVANQLENTPE 333 (342)
T ss_dssp THHHHHHHHHHHTSCCC
T ss_pred HHHHHHHHHHHHhhCcc
Confidence 99999999998876543
No 140
>1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A*
Probab=99.72 E-value=1e-17 Score=136.01 Aligned_cols=114 Identities=16% Similarity=0.174 Sum_probs=82.5
Q ss_pred EEEEEEeCCCCcccHHHHHHhhhcCCEEEEEEeCCCcccHHHHHHHHHHHHhCCCCCCCcEEEEEeCCCCCCCC----CH
Q 029517 56 SKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAV----SA 131 (192)
Q Consensus 56 ~~~~i~D~~G~~~~~~~~~~~~~~~d~ii~v~D~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~~~----~~ 131 (192)
.++.+||||||++|.......+..+|++|+|+|+++........+.+..+... ...|+++++||+|+.+.. ..
T Consensus 83 ~~i~iiDtPGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~~~~~~---~~~~iivviNK~Dl~~~~~~~~~~ 159 (410)
T 1kk1_A 83 RRVSFIDAPGHEALMTTMLAGASLMDGAILVIAANEPCPRPQTREHLMALQII---GQKNIIIAQNKIELVDKEKALENY 159 (410)
T ss_dssp EEEEEEECSSHHHHHHHHHHCGGGCSEEEEEEETTSCSSCHHHHHHHHHHHHH---TCCCEEEEEECGGGSCHHHHHHHH
T ss_pred cEEEEEECCChHHHHHHHHhhhhhCCEEEEEEECCCCCCChhHHHHHHHHHHc---CCCcEEEEEECccCCCHHHHHHHH
Confidence 78999999999999888888888999999999998653122222222222222 236899999999997622 23
Q ss_pred HHHHhHcCccccCCcceEEEEeeecCCCCHHHHHHHHHHHHHh
Q 029517 132 DELARYLDLKKLDERVCMFEAVSGYDGFGIKESVEWLVEVMER 174 (192)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~e~~~~i~~~i~~ 174 (192)
+++.+++.. ......+++++||++|.|+++++++|.+.+..
T Consensus 160 ~~i~~~l~~--~~~~~~~~i~vSA~~g~gi~~L~~~l~~~~~~ 200 (410)
T 1kk1_A 160 RQIKEFIEG--TVAENAPIIPISALHGANIDVLVKAIEDFIPT 200 (410)
T ss_dssp HHHHHHHTT--STTTTCCEEECBTTTTBSHHHHHHHHHHHSCC
T ss_pred HHHHHHHHh--cCcCCCeEEEeeCCCCCCHHHHHHHHHHhCCC
Confidence 445555541 11246789999999999999999999986654
No 141
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=99.72 E-value=5.6e-18 Score=130.45 Aligned_cols=138 Identities=20% Similarity=0.207 Sum_probs=92.9
Q ss_pred ccccHHHHHHHHhhhhccCCCCCCCCCCCCcceEEEEEEecCEEEEEEeCCCCcccH------HHHHHhhh--cCCEEEE
Q 029517 14 TKTEFHTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPGLR------SIWEKYYE--EAHAVVF 85 (192)
Q Consensus 14 kst~~~~l~~~~~~~~~~~~~~~~~~~~~T~g~~~~~~~~~~~~~~i~D~~G~~~~~------~~~~~~~~--~~d~ii~ 85 (192)
|||+||+|.+.. ..+.+++ ..|.......+.. +..+.+|||||++.+. .....|+. .+|++++
T Consensus 16 KSTL~n~L~g~~----~~v~~~p----g~tv~~~~~~~~~-~~~l~l~DtpG~~~~~~~~~~e~v~~~~~~~~~~d~vi~ 86 (272)
T 3b1v_A 16 KTSLFNLITGHN----QRVGNWP----GVTVERKSGLVKK-NKDLEIQDLPGIYSMSPYSPEAKVARDYLLSQRADSILN 86 (272)
T ss_dssp HHHHHHHHHCCC----CCCCSSS----CCCCSCEEEECTT-CTTEEEEECCCCSCSSCSSHHHHHHHHHHHTTCCSEEEE
T ss_pred HHHHHHHHHCCC----CcccCCC----CCcEEEEEEEEec-CCeEEEEECCCcCccCCCChHHHHHHHHHhcCCCCEEEE
Confidence 788888886532 1122221 2233333334444 6789999999998764 45566665 5999999
Q ss_pred EEeCCCcccHHHHHHHHHHHHhCCCCCCCcEEEEEeCCCCCC--CCCHHHHHhHcCccccCCcceEEEEeeecCCCCHHH
Q 029517 86 VIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPD--AVSADELARYLDLKKLDERVCMFEAVSGYDGFGIKE 163 (192)
Q Consensus 86 v~D~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~e 163 (192)
|+|+++. ++...|...+.+. ++|+++++||+|+.. ... .+..++.. ..+++++++||++|.||++
T Consensus 87 V~D~t~~---e~~~~~~~~l~~~----~~p~ilv~NK~Dl~~~~~~~-~~~~~l~~-----~lg~~vi~~SA~~g~gi~e 153 (272)
T 3b1v_A 87 VVDATNL---ERNLYLTTQLIET----GIPVTIALNMIDVLDGQGKK-INVDKLSY-----HLGVPVVATSALKQTGVDQ 153 (272)
T ss_dssp EEEGGGH---HHHHHHHHHHHHT----CSCEEEEEECHHHHHHTTCC-CCHHHHHH-----HHTSCEEECBTTTTBSHHH
T ss_pred EecCCch---HhHHHHHHHHHhc----CCCEEEEEEChhhCCcCCcH-HHHHHHHH-----HcCCCEEEEEccCCCCHHH
Confidence 9999874 4444566666543 689999999999854 111 12222222 2357899999999999999
Q ss_pred HHHHHHHHHH
Q 029517 164 SVEWLVEVME 173 (192)
Q Consensus 164 ~~~~i~~~i~ 173 (192)
+|++|.+.+.
T Consensus 154 l~~~i~~~~~ 163 (272)
T 3b1v_A 154 VVKKAAHTTT 163 (272)
T ss_dssp HHHHHHHSCT
T ss_pred HHHHHHHHHh
Confidence 9999988653
No 142
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=99.72 E-value=1.9e-18 Score=133.30 Aligned_cols=139 Identities=21% Similarity=0.223 Sum_probs=94.6
Q ss_pred hccccHHHHHHHHhhhhccCCCCCCCCCCCCcceEEEEEEecCEEEEEEeCCCCcccH----------HHHHHhh--hcC
Q 029517 13 FTKTEFHTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPGLR----------SIWEKYY--EEA 80 (192)
Q Consensus 13 ~kst~~~~l~~~~~~~~~~~~~~~~~~~~~T~g~~~~~~~~~~~~~~i~D~~G~~~~~----------~~~~~~~--~~~ 80 (192)
=|||++|+|+++.. ..++.+ ..|.......+...+..+.+|||||+..+. .....|+ +.+
T Consensus 15 GKSTLin~l~g~~~-~v~~~~-------g~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~e~i~~~~~~~~~~ 86 (274)
T 3i8s_A 15 GKTTLFNQLTGSRQ-RVGNWA-------GVTVERKEGQFSTTDHQVTLVDLPGTYSLTTISSQTSLDEQIACHYILSGDA 86 (274)
T ss_dssp SHHHHHHHHHTTCE-EEEECT-------TSSSEEEEEEEECSSCEEEEEECCCCSCSCC----CCHHHHHHHHHHHHTCC
T ss_pred CHHHHHHHHhCCCc-ccCCCC-------CeeEEEEEEEEEeCCCceEEEECcCCCccccccccCCHHHHHHHHHHhhcCC
Confidence 38888888876532 111111 223444455566667889999999987654 2233343 789
Q ss_pred CEEEEEEeCCCcccHHHHHHHHHHHHhCCCCCCCcEEEEEeCCCCCCC----CCHHHHHhHcCccccCCcceEEEEeeec
Q 029517 81 HAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDA----VSADELARYLDLKKLDERVCMFEAVSGY 156 (192)
Q Consensus 81 d~ii~v~D~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~~----~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 156 (192)
|++++|+|+++.+ ....+...+.+. ++|+++|+||+|+.+. ...+.+.+.+ +++++++||+
T Consensus 87 d~ii~VvD~~~~~---~~~~~~~~l~~~----~~p~ivv~NK~Dl~~~~~~~~~~~~l~~~l--------g~~~i~~SA~ 151 (274)
T 3i8s_A 87 DLLINVVDASNLE---RNLYLTLQLLEL----GIPCIVALNMLDIAEKQNIRIEIDALSARL--------GCPVIPLVST 151 (274)
T ss_dssp SEEEEEEEGGGHH---HHHHHHHHHHHH----TCCEEEEEECHHHHHHTTEEECHHHHHHHH--------TSCEEECCCG
T ss_pred CEEEEEecCCChH---HHHHHHHHHHhc----CCCEEEEEECccchhhhhHHHHHHHHHHhc--------CCCEEEEEcC
Confidence 9999999998754 334444444443 6899999999998542 1223333333 5789999999
Q ss_pred CCCCHHHHHHHHHHHHHh
Q 029517 157 DGFGIKESVEWLVEVMER 174 (192)
Q Consensus 157 ~~~gi~e~~~~i~~~i~~ 174 (192)
+|.|+++++++|.+.+..
T Consensus 152 ~g~gi~el~~~i~~~~~~ 169 (274)
T 3i8s_A 152 RGRGIEALKLAIDRYKAN 169 (274)
T ss_dssp GGHHHHHHHHHHHTCCCC
T ss_pred CCCCHHHHHHHHHHHHhc
Confidence 999999999999876543
No 143
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.72 E-value=5.7e-19 Score=131.26 Aligned_cols=135 Identities=18% Similarity=0.226 Sum_probs=87.9
Q ss_pred ccccHHHHHHHHhhhhccCCCCCCCCCCCCcceEEEEEEecCEEEEEEeCCCCcccHHHHHHhhhc----CCEEEEEEeC
Q 029517 14 TKTEFHTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPGLRSIWEKYYEE----AHAVVFVIDA 89 (192)
Q Consensus 14 kst~~~~l~~~~~~~~~~~~~~~~~~~~~T~g~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~----~d~ii~v~D~ 89 (192)
|||++|+|.+.... .....+.||++..+ ..+.+.+|||||++.++..+..+++. +|++|+|+|+
T Consensus 25 KTsl~~~l~~~~~~-------~~~~~~~~~~~~~~-----~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~i~v~D~ 92 (218)
T 1nrj_B 25 KTSLLTLLTTDSVR-------PTVVSQEPLSAADY-----DGSGVTLVDFPGHVKLRYKLSDYLKTRAKFVKGLIFMVDS 92 (218)
T ss_dssp HHHHHHHHHHSSCC-------CBCCCSSCEEETTG-----GGSSCEEEECCCCGGGTHHHHHHHHHHGGGEEEEEEEEET
T ss_pred HHHHHHHHhcCCCC-------CeeeecCceEEEEe-----eCceEEEEECCCcHHHHHHHHHHHHhccccCCEEEEEEEC
Confidence 67777777654321 12234566665543 56789999999999999888888887 9999999999
Q ss_pred C-CcccHHHHHHHHHHHHhCC---CCCCCcEEEEEeCCCCCCCCCHHHHHhHcCc--cc-cCCcceEEEEeeecCCCC
Q 029517 90 A-CPSRFEDSKTALEKVLRNE---DLQGAPLLILANKQDLPDAVSADELARYLDL--KK-LDERVCMFEAVSGYDGFG 160 (192)
Q Consensus 90 ~-~~~s~~~~~~~~~~i~~~~---~~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~--~~-~~~~~~~~~~~Sa~~~~g 160 (192)
+ ++.++..+..|+..+.... ...++|+++|+||+|+......+++.+.+.. .. ....+.+++++||++|.+
T Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~Sa~~~~~ 170 (218)
T 1nrj_B 93 TVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFTARPPSKIKDALESEIQKVIERRKKSLNEVERKINEE 170 (218)
T ss_dssp TSCTTCCHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHC--------
T ss_pred CCChHHHHHHHHHHHHHHhcccccccCCCCEEEEEEchHhcccCCHHHHHHHHHHHHHHHHHHHhccccccccccccc
Confidence 9 8889999999988887642 1257999999999999875553322221110 00 012345667777776553
No 144
>2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A*
Probab=99.72 E-value=6e-17 Score=136.41 Aligned_cols=113 Identities=21% Similarity=0.218 Sum_probs=88.1
Q ss_pred CEEEEEEeCCCCcccHHHHHHhhhcCCEEEEEEeCCCcccHHHHHHHHHHHHhCCCCCCCcEEEEEeCCCCCCCCCHHHH
Q 029517 55 NSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAVSADEL 134 (192)
Q Consensus 55 ~~~~~i~D~~G~~~~~~~~~~~~~~~d~ii~v~D~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~~~~~~~~ 134 (192)
.+.+++|||||+.+|...+..+++.+|++|+|+|+++..+.+....|..... .++|+++++||+|+.... .++.
T Consensus 72 ~~~inliDTPGh~dF~~ev~r~l~~aD~aILVVDa~~gv~~qt~~~~~~a~~-----~~ipiIvviNKiDl~~a~-~~~v 145 (600)
T 2ywe_A 72 TYKLHLIDTPGHVDFSYEVSRALAACEGALLLIDASQGIEAQTVANFWKAVE-----QDLVIIPVINKIDLPSAD-VDRV 145 (600)
T ss_dssp EEEEEEECCCCSGGGHHHHHHHHHTCSEEEEEEETTTBCCHHHHHHHHHHHH-----TTCEEEEEEECTTSTTCC-HHHH
T ss_pred eEEEEEEECCCcHhHHHHHHHHHHhCCEEEEEEECCCCccHHHHHHHHHHHH-----CCCCEEEEEeccCccccC-HHHH
Confidence 4789999999999999999999999999999999999888887777655432 368999999999998653 3322
Q ss_pred -HhHcCccccCCcceEEEEeeecCCCCHHHHHHHHHHHHHhc
Q 029517 135 -ARYLDLKKLDERVCMFEAVSGYDGFGIKESVEWLVEVMERS 175 (192)
Q Consensus 135 -~~~~~~~~~~~~~~~~~~~Sa~~~~gi~e~~~~i~~~i~~~ 175 (192)
.+.... +......++++||++|.||++++++|.+.+...
T Consensus 146 ~~el~~~--lg~~~~~vi~vSAktg~GI~~Lle~I~~~lp~p 185 (600)
T 2ywe_A 146 KKQIEEV--LGLDPEEAILASAKEGIGIEEILEAIVNRIPPP 185 (600)
T ss_dssp HHHHHHT--SCCCGGGCEECBTTTTBSHHHHHHHHHHHSCCC
T ss_pred HHHHHHh--hCCCcccEEEEEeecCCCchHHHHHHHHhcccc
Confidence 222221 011223589999999999999999999887654
No 145
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=99.72 E-value=1.4e-18 Score=142.19 Aligned_cols=142 Identities=19% Similarity=0.244 Sum_probs=90.0
Q ss_pred hccccHHHHHHHHhhhhccCCCCCCCCCCCCcceEEEEEEecCEEEEEEeCCCCc--------ccHHHHHHhhhcCCEEE
Q 029517 13 FTKTEFHTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQP--------GLRSIWEKYYEEAHAVV 84 (192)
Q Consensus 13 ~kst~~~~l~~~~~~~~~~~~~~~~~~~~~T~g~~~~~~~~~~~~~~i~D~~G~~--------~~~~~~~~~~~~~d~ii 84 (192)
=|||++|+|+++....+...++ .|....+..+...+..+.+|||||++ .+...+..+++.+|++|
T Consensus 15 GKStL~n~l~~~~~~~v~~~~g-------~T~d~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~~ad~il 87 (436)
T 2hjg_A 15 GKSTIFNRIAGERISIVEDTPG-------VTRDRIYSSAEWLNYDFNLIDTGGIDIGDEPFLAQIRQQAEIAMDEADVII 87 (436)
T ss_dssp SHHHHHHHHEEEECC------------------CEEEECTTCSSCCEEEC---------CHHHHHHHHHHHHHHHCSEEE
T ss_pred CHHHHHHHHhCCCceeecCCCC-------CccceEEEEEEECCceEEEEECCCCCCcchhHHHHHHHHHHHHHHhCCEEE
Confidence 3888888887643332222222 22233344555556789999999985 56677788999999999
Q ss_pred EEEeCCCcccHHHHHHHHHHHHhCCCCCCCcEEEEEeCCCCCCCCCHHHHHhHcCccccCCcce-EEEEeeecCCCCHHH
Q 029517 85 FVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAVSADELARYLDLKKLDERVC-MFEAVSGYDGFGIKE 163 (192)
Q Consensus 85 ~v~D~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~gi~e 163 (192)
+|+|++++.+... .++..+++. .++|+++|+||+|+.... .++.++. ..++ +++++||++|.|+.+
T Consensus 88 ~vvD~~~~~~~~d--~~~~~~l~~---~~~pvilv~NK~D~~~~~--~~~~~~~------~lg~~~~~~iSA~~g~gv~~ 154 (436)
T 2hjg_A 88 FMVNGREGVTAAD--EEVAKILYR---TKKPVVLAVNKLDNTEMR--ANIYDFY------SLGFGEPYPISGTHGLGLGD 154 (436)
T ss_dssp EEEETTTCSCHHH--HHHHHHHTT---CCSCEEEEEECCCC-------CCCSSG------GGSSCCCEECBTTTTBTHHH
T ss_pred EEEeCCCCCCHHH--HHHHHHHHH---cCCCEEEEEECccCccch--hhHHHHH------HcCCCCeEEEeCcCCCChHH
Confidence 9999998766554 555555554 578999999999986421 1111111 1222 688999999999999
Q ss_pred HHHHHHHHHHh
Q 029517 164 SVEWLVEVMER 174 (192)
Q Consensus 164 ~~~~i~~~i~~ 174 (192)
+++++.+.+.+
T Consensus 155 L~~~i~~~l~~ 165 (436)
T 2hjg_A 155 LLDAVAEHFKN 165 (436)
T ss_dssp HHHHHHHTGGG
T ss_pred HHHHHHHhcCc
Confidence 99999987764
No 146
>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*
Probab=99.71 E-value=2.7e-17 Score=133.32 Aligned_cols=116 Identities=15% Similarity=0.115 Sum_probs=90.3
Q ss_pred CEEEEEEeCCCCcccHHHHHHhhhcCCEEEEEEeCCCcccHHHHHHHHHHHHhCCCCCCCcEEEEEeCCCCCCCCC----
Q 029517 55 NSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAVS---- 130 (192)
Q Consensus 55 ~~~~~i~D~~G~~~~~~~~~~~~~~~d~ii~v~D~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~~~~---- 130 (192)
..++.+|||||+++|...+..++..+|++++|+|+++..+.....+++..+... ...|+++++||+|+.+...
T Consensus 74 ~~~~~iiDtPGh~~~~~~~~~~~~~~D~~ilVvda~~~~~~~qt~~~~~~~~~~---~~~~iivviNK~Dl~~~~~~~~~ 150 (403)
T 3sjy_A 74 LRRISFIDAPGHEVLMATMLSGAALMDGAILVVAANEPFPQPQTREHFVALGII---GVKNLIIVQNKVDVVSKEEALSQ 150 (403)
T ss_dssp EEEEEEEECCCCGGGHHHHHHHHTTCSEEEEEEETTSCSSCHHHHHHHHHHHHH---TCCCEEEEEECGGGSCHHHHHHH
T ss_pred cceEEEEECCCcHHHHHHHHHHHhhCCEEEEEEECCCCCCcHHHHHHHHHHHHc---CCCCEEEEEECccccchHHHHHH
Confidence 378999999999999999999999999999999999887677777777665544 2369999999999975321
Q ss_pred HHHHHhHcCccccCCcceEEEEeeecCCCCHHHHHHHHHHHHHhc
Q 029517 131 ADELARYLDLKKLDERVCMFEAVSGYDGFGIKESVEWLVEVMERS 175 (192)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~e~~~~i~~~i~~~ 175 (192)
.+++.+.+. .......+++++||++|.||++++++|.+.+...
T Consensus 151 ~~~i~~~l~--~~~~~~~~ii~vSA~~g~gi~~L~~~l~~~l~~~ 193 (403)
T 3sjy_A 151 YRQIKQFTK--GTWAENVPIIPVSALHKINIDSLIEGIEEYIKTP 193 (403)
T ss_dssp HHHHHHHHT--TSTTTTCCEEECBTTTTBSHHHHHHHHHHHSCCC
T ss_pred HHHHHHHHH--hhCCCCCEEEEEECCCCcChHHHHHHHHHhCCCC
Confidence 123333332 1112367899999999999999999999876543
No 147
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}
Probab=99.71 E-value=8.5e-18 Score=138.05 Aligned_cols=142 Identities=19% Similarity=0.215 Sum_probs=88.6
Q ss_pred hccccHHHHHHHHhhhhccCCCCCCCCCCCCcceEEEEEEecCEEEEEEeCCCCcccHHHHHH--------hhhcCCEEE
Q 029517 13 FTKTEFHTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPGLRSIWEK--------YYEEAHAVV 84 (192)
Q Consensus 13 ~kst~~~~l~~~~~~~~~~~~~~~~~~~~~T~g~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~--------~~~~~d~ii 84 (192)
=|||++|+|+++-.....+.++ .|.......+..++..+.+|||||...+...++. +++.+|+++
T Consensus 236 GKSSLln~L~~~~~a~v~~~~g-------tT~d~~~~~i~~~g~~v~liDT~G~~~~~~~ve~~gi~~~~~~~~~aD~vl 308 (462)
T 3geh_A 236 GKSSLLNAWSQSDRAIVTDLPG-------TTRDVVESQLVVGGIPVQVLDTAGIRETSDQVEKIGVERSRQAANTADLVL 308 (462)
T ss_dssp SHHHHHHHHHHHHBSCCSCCTT-------CCHHHHHHEEEETTEEEEECC--------------------CCCCSCSEEE
T ss_pred CHHHHHHHHhCCCcccccCCCC-------eeEEEEEEEEEECCEEEEEEECCccccchhHHHHHHHHHHhhhhhcCCEEE
Confidence 3788999988765432222221 2222223346667889999999998665443333 578899999
Q ss_pred EEEeCCCcccHHHHHHHHHHHHhCCCCCCCcEEEEEeCCCCCCCCCHHHHHhHcCccccCCcceEEEEeeecCCCCHHHH
Q 029517 85 FVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAVSADELARYLDLKKLDERVCMFEAVSGYDGFGIKES 164 (192)
Q Consensus 85 ~v~D~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~e~ 164 (192)
+|+|++++.+... ..++..+ ...|+++|+||+|+......+ ... .+ ....+++++||++|.|++++
T Consensus 309 ~VvD~s~~~~~~~-~~i~~~l------~~~piivV~NK~Dl~~~~~~~----~~~--~~-~~~~~~i~iSAktg~Gi~eL 374 (462)
T 3geh_A 309 LTIDAATGWTTGD-QEIYEQV------KHRPLILVMNKIDLVEKQLIT----SLE--YP-ENITQIVHTAAAQKQGIDSL 374 (462)
T ss_dssp EEEETTTCSCHHH-HHHHHHH------TTSCEEEEEECTTSSCGGGST----TCC--CC-TTCCCEEEEBTTTTBSHHHH
T ss_pred EEeccCCCCCHHH-HHHHHhc------cCCcEEEEEECCCCCcchhhH----HHH--Hh-ccCCcEEEEECCCCCCHHHH
Confidence 9999998766654 3444443 247999999999997532211 111 01 13568999999999999999
Q ss_pred HHHHHHHHHhc
Q 029517 165 VEWLVEVMERS 175 (192)
Q Consensus 165 ~~~i~~~i~~~ 175 (192)
+++|.+.+...
T Consensus 375 ~~~i~~~~~~~ 385 (462)
T 3geh_A 375 ETAILEIVQTG 385 (462)
T ss_dssp HHHHHHHHTTS
T ss_pred HHHHHHHHhcc
Confidence 99999987653
No 148
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=99.71 E-value=2.6e-17 Score=126.68 Aligned_cols=140 Identities=19% Similarity=0.219 Sum_probs=97.8
Q ss_pred ccccHHHHHHHHhhhhccCCCCCCCCCCCCcceEEEEEEecCEEEEEEeCCCCcccHH------HHHHhh--hcCCEEEE
Q 029517 14 TKTEFHTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPGLRS------IWEKYY--EEAHAVVF 85 (192)
Q Consensus 14 kst~~~~l~~~~~~~~~~~~~~~~~~~~~T~g~~~~~~~~~~~~~~i~D~~G~~~~~~------~~~~~~--~~~d~ii~ 85 (192)
|||++|+|++... .+.+ ....|.......+...+..+.+|||||+..+.. ....++ .++|++++
T Consensus 16 KTTL~n~l~g~~~----~~~~----~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~d~vi~ 87 (271)
T 3k53_A 16 KTTIFNALTGLRQ----HVGN----WPGVTVEKKEGIMEYREKEFLVVDLPGIYSLTAHSIDELIARNFILDGNADVIVD 87 (271)
T ss_dssp HHHHHHHHHTTCE----EEEE----CTTSSCEEEEEEEEETTEEEEEEECCCCSCCCSSCHHHHHHHHHHHTTCCSEEEE
T ss_pred HHHHHHHHhCCCc----ccCC----CCCeEEEeeEEEEEECCceEEEEeCCCccccccCCHHHHHHHHhhhccCCcEEEE
Confidence 7888888865422 1111 112233344445667788899999999876654 455566 68999999
Q ss_pred EEeCCCcccHHHHHHHHHHHHhCCCCCCCcEEEEEeCCCCCC----CCCHHHHHhHcCccccCCcceEEEEeeecCCCCH
Q 029517 86 VIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPD----AVSADELARYLDLKKLDERVCMFEAVSGYDGFGI 161 (192)
Q Consensus 86 v~D~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~----~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi 161 (192)
|+|+++. ++...+...+... ...|+++++||+|+.+ ....+.+.+.+ +++++++||++|.|+
T Consensus 88 v~D~~~~---~~~~~~~~~~~~~---~~~p~ilv~NK~Dl~~~~~~~~~~~~l~~~l--------g~~~~~~Sa~~g~gi 153 (271)
T 3k53_A 88 IVDSTCL---MRNLFLTLELFEM---EVKNIILVLNKFDLLKKKGAKIDIKKMRKEL--------GVPVIPTNAKKGEGV 153 (271)
T ss_dssp EEEGGGH---HHHHHHHHHHHHT---TCCSEEEEEECHHHHHHHTCCCCHHHHHHHH--------SSCEEECBGGGTBTH
T ss_pred EecCCcc---hhhHHHHHHHHhc---CCCCEEEEEEChhcCcccccHHHHHHHHHHc--------CCcEEEEEeCCCCCH
Confidence 9999874 4444555566554 2399999999999753 22334444433 478999999999999
Q ss_pred HHHHHHHHHHHHhc
Q 029517 162 KESVEWLVEVMERS 175 (192)
Q Consensus 162 ~e~~~~i~~~i~~~ 175 (192)
+++++++.+.+...
T Consensus 154 ~~l~~~i~~~~~~~ 167 (271)
T 3k53_A 154 EELKRMIALMAEGK 167 (271)
T ss_dssp HHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHhcc
Confidence 99999999887654
No 149
>1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*
Probab=99.70 E-value=2.2e-17 Score=136.46 Aligned_cols=151 Identities=14% Similarity=0.170 Sum_probs=96.7
Q ss_pred ccccHHHHHHHHhhhhccCCCCCC--CCCCCCcceEEEEEEecCEEEEEEeCCCCcccHHHHHHhhhcCCEEEEEEeCCC
Q 029517 14 TKTEFHTLLEKLKSVYSNVEGLPP--DRIVPTVGLNIGRIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAAC 91 (192)
Q Consensus 14 kst~~~~l~~~~~~~~~~~~~~~~--~~~~~T~g~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ii~v~D~~~ 91 (192)
|||++++|++....... +... .....|++..+..+...+..+.+|||||+++|...+..++..+|++|+|+|+++
T Consensus 32 KSTLi~~L~~~~~~~~~---d~~~~e~~~GiTi~~~~~~~~~~~~~i~iiDtPGh~~~~~~~~~~~~~aD~~ilVvda~~ 108 (482)
T 1wb1_A 32 KTTLSKVLTEIASTSAH---DKLPESQKRGITIDIGFSAFKLENYRITLVDAPGHADLIRAVVSAADIIDLALIVVDAKE 108 (482)
T ss_dssp HHHHHHHHHTTC-----------------------CCCEEEETTEEEEECCCSSHHHHHHHHHHHTTSCCEEEEEEETTT
T ss_pred HHHHHHHHHCCCccccc---ccccccccCccEEecceEEEEECCEEEEEEECCChHHHHHHHHHHHhhCCEEEEEEecCC
Confidence 78888888654311000 1111 122456666667777788999999999999999988899999999999999987
Q ss_pred cccHHHHHHHHHHHHhCCCCCCCcEEEEEeCCCCCCCCCH----HHHHhHcCccccCCcceEEEEeeecCCCCHHHHHHH
Q 029517 92 PSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAVSA----DELARYLDLKKLDERVCMFEAVSGYDGFGIKESVEW 167 (192)
Q Consensus 92 ~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~~~~~----~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~e~~~~ 167 (192)
...-+. .+.+..+.. .++|+++++||+|+.+.... +++.+++... ......+++++||++|.|+++++++
T Consensus 109 g~~~qt-~e~l~~~~~----~~ip~IvviNK~Dl~~~~~~~~~~~~l~~~l~~~-~~~~~~~ii~vSA~~g~gI~~L~~~ 182 (482)
T 1wb1_A 109 GPKTQT-GEHMLILDH----FNIPIIVVITKSDNAGTEEIKRTEMIMKSILQST-HNLKNSSIIPISAKTGFGVDELKNL 182 (482)
T ss_dssp CSCHHH-HHHHHHHHH----TTCCBCEEEECTTSSCHHHHHHHHHHHHHHHHHS-SSGGGCCEEECCTTTCTTHHHHHHH
T ss_pred CccHHH-HHHHHHHHH----cCCCEEEEEECCCcccchhHHHHHHHHHHHHhhh-cccccceEEEEECcCCCCHHHHHHH
Confidence 432222 222222222 36888999999999752111 2233333211 0112678999999999999999999
Q ss_pred HHHHHH
Q 029517 168 LVEVME 173 (192)
Q Consensus 168 i~~~i~ 173 (192)
|.+.+.
T Consensus 183 L~~~i~ 188 (482)
T 1wb1_A 183 IITTLN 188 (482)
T ss_dssp HHHHHH
T ss_pred HHHhhc
Confidence 998775
No 150
>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=99.70 E-value=9.9e-17 Score=131.13 Aligned_cols=122 Identities=11% Similarity=0.096 Sum_probs=85.2
Q ss_pred CCCcceEEEEEEecCEEEEEEeCCCCcccHHHHHHhhhcCCEEEEEEeCCCcccHHHHHHHHHHHHhCCCCCCCcEEEEE
Q 029517 41 VPTVGLNIGRIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILA 120 (192)
Q Consensus 41 ~~T~g~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ii~v~D~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~ 120 (192)
..|+...+..+.....++.+|||||+++|...+..+++.+|++|+|+|+++.... ...+++..+... ...|+++++
T Consensus 89 GiTi~~~~~~~~~~~~~~~iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~g~~~-qt~~~l~~~~~~---~~~~iIvvi 164 (434)
T 1zun_B 89 GITIDVAYRYFSTAKRKFIIADTPGHEQYTRNMATGASTCDLAIILVDARYGVQT-QTRRHSYIASLL---GIKHIVVAI 164 (434)
T ss_dssp -CCCCCEEEEEECSSEEEEEEECCCSGGGHHHHHHHHTTCSEEEEEEETTTCSCH-HHHHHHHHHHHT---TCCEEEEEE
T ss_pred CcEEEeeeeEeecCCceEEEEECCChHHHHHHHHHHHhhCCEEEEEEECCCCCcH-HHHHHHHHHHHc---CCCeEEEEE
Confidence 3466666667777888999999999999999988899999999999999876533 333444433333 224799999
Q ss_pred eCCCCCCCCC------HHHHHhHcCccccCCcceEEEEeeecCCCCHHHHHH
Q 029517 121 NKQDLPDAVS------ADELARYLDLKKLDERVCMFEAVSGYDGFGIKESVE 166 (192)
Q Consensus 121 nK~Dl~~~~~------~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~e~~~ 166 (192)
||+|+.+... .+++.++++.........+++++||++|.|++++++
T Consensus 165 NK~Dl~~~~~~~~~~i~~~~~~~~~~~g~~~~~~~~i~vSA~~g~gi~~~~~ 216 (434)
T 1zun_B 165 NKMDLNGFDERVFESIKADYLKFAEGIAFKPTTMAFVPMSALKGDNVVNKSE 216 (434)
T ss_dssp ECTTTTTSCHHHHHHHHHHHHHHHHTTTCCCSEEEEEECCTTTCTTTSSCCT
T ss_pred EcCcCCcccHHHHHHHHHHHHHHHHHhCCCccCceEEEEeccCCCCcccccc
Confidence 9999975211 123333333111002348899999999999998544
No 151
>3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus}
Probab=99.69 E-value=2.9e-16 Score=128.47 Aligned_cols=122 Identities=21% Similarity=0.259 Sum_probs=83.5
Q ss_pred CCCcceEEEEEEecCEEEEEEeCCCCcccHHHHHHhhhcCCEEEEEEeCCCccc---H---HHHHHHHHHHHhCCCCCCC
Q 029517 41 VPTVGLNIGRIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSR---F---EDSKTALEKVLRNEDLQGA 114 (192)
Q Consensus 41 ~~T~g~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ii~v~D~~~~~s---~---~~~~~~~~~i~~~~~~~~~ 114 (192)
..|+...+..+...+..+.|||||||++|...+..+++.+|++|+|+|+++... + ....+.+..+.. .++
T Consensus 80 GiTid~~~~~~~~~~~~~~iiDTPGh~~f~~~~~~~~~~aD~~ilVVDa~~g~~e~~~~~~~qt~e~l~~~~~----~~v 155 (439)
T 3j2k_7 80 GKTVEVGRAYFETEKKHFTILDAPGHKSFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAKT----AGV 155 (439)
T ss_pred CceEEEeEEEEecCCeEEEEEECCChHHHHHHHHhhHhhCCEEEEEEECCCCccccccCCCchHHHHHHHHHH----cCC
Confidence 345555566677778899999999999999999999999999999999987532 1 122222222222 246
Q ss_pred c-EEEEEeCCCCCCCC----C----HHHHHhHcCccccC-CcceEEEEeeecCCCCHHHHHH
Q 029517 115 P-LLILANKQDLPDAV----S----ADELARYLDLKKLD-ERVCMFEAVSGYDGFGIKESVE 166 (192)
Q Consensus 115 p-iiiv~nK~Dl~~~~----~----~~~~~~~~~~~~~~-~~~~~~~~~Sa~~~~gi~e~~~ 166 (192)
| +++++||+|+.... . .+++.++++...+. ...++++++||++|.|++++.+
T Consensus 156 ~~iIvviNK~Dl~~~~~~~~~~~~i~~~~~~~l~~~g~~~~~~~~~i~iSA~~G~ni~~l~~ 217 (439)
T 3j2k_7 156 KHLIVLINKMDDPTVNWSNERYEECKEKLVPFLKKVGFNPKKDIHFMPCSGLTGANLKEQSD 217 (439)
T ss_pred CeEEEEeecCCCcccchHHHHHHHHHHHHHHHHHHhcccccCCeeEEEeeccCCcccccccc
Confidence 6 99999999996421 1 12233333211111 1257899999999999999765
No 152
>2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei}
Probab=99.69 E-value=6.7e-17 Score=129.43 Aligned_cols=137 Identities=11% Similarity=-0.015 Sum_probs=102.3
Q ss_pred ccccHHHHHHHHhhhhccCCCCCCCCCCCCcceEEEEEEecCEEEEEEeCCCCcccHHHHHHhhhcCCEEEEEEeCCCcc
Q 029517 14 TKTEFHTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPS 93 (192)
Q Consensus 14 kst~~~~l~~~~~~~~~~~~~~~~~~~~~T~g~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ii~v~D~~~~~ 93 (192)
|||++++|+ ....|++..+..+...+.++.+|||||+++|.......++.+|++|+|+| +. .
T Consensus 34 KSTL~~~L~----------------~~giTi~~~~~~~~~~~~~i~iiDtPGh~~f~~~~~~~~~~aD~ailVvd-~~-g 95 (370)
T 2elf_A 34 RTSLAANLG----------------KKGTSSDITMYNNDKEGRNMVFVDAHSYPKTLKSLITALNISDIAVLCIP-PQ-G 95 (370)
T ss_dssp HHHHHHTTS----------------EEEEESSSEEEEECSSSSEEEEEECTTTTTCHHHHHHHHHTCSEEEEEEC-TT-C
T ss_pred HHHHHHHHH----------------hCCEEEEeeEEEEecCCeEEEEEECCChHHHHHHHHHHHHHCCEEEEEEc-CC-C
Confidence 677777665 34677777788888778899999999999998888888999999999999 53 4
Q ss_pred cHHHHHHHHHHHHhCCCCCCCcE-EEEEe-CCCCCCCCC----HHHHHhHcCccccCCcceEEEE--eeecC---CCCHH
Q 029517 94 RFEDSKTALEKVLRNEDLQGAPL-LILAN-KQDLPDAVS----ADELARYLDLKKLDERVCMFEA--VSGYD---GFGIK 162 (192)
Q Consensus 94 s~~~~~~~~~~i~~~~~~~~~pi-iiv~n-K~Dl~~~~~----~~~~~~~~~~~~~~~~~~~~~~--~Sa~~---~~gi~ 162 (192)
......+++..+... ++|. ++++| |+|+ +... .+++.++++.. ....+++++ +||++ |.|++
T Consensus 96 ~~~qt~e~~~~~~~~----~i~~~ivvvNNK~Dl-~~~~~~~~~~~i~~~l~~~--~~~~~~ii~~~~SA~~~~~g~gi~ 168 (370)
T 2elf_A 96 LDAHTGECIIALDLL----GFKHGIIALTRSDST-HMHAIDELKAKLKVITSGT--VLQDWECISLNTNKSAKNPFEGVD 168 (370)
T ss_dssp CCHHHHHHHHHHHHT----TCCEEEEEECCGGGS-CHHHHHHHHHHHHHHTTTS--TTTTCEEEECCCCTTSSSTTTTHH
T ss_pred CcHHHHHHHHHHHHc----CCCeEEEEEEeccCC-CHHHHHHHHHHHHHHHHhc--CCCceEEEecccccccCcCCCCHH
Confidence 455555665554433 5676 88999 9999 4211 13455555411 113579999 99999 99999
Q ss_pred HHHHHHHHHHHhc
Q 029517 163 ESVEWLVEVMERS 175 (192)
Q Consensus 163 e~~~~i~~~i~~~ 175 (192)
+++++|.+.+...
T Consensus 169 ~L~~~l~~~~~~~ 181 (370)
T 2elf_A 169 ELKARINEVAEKI 181 (370)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHhhcccc
Confidence 9999999887654
No 153
>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*
Probab=99.67 E-value=4.5e-16 Score=128.80 Aligned_cols=121 Identities=17% Similarity=0.134 Sum_probs=81.6
Q ss_pred CCCcceEEEEEEecCEEEEEEeCCCCcccHHHHHHhhhcCCEEEEEEeCCCcccHH------HHHHHHHHHHhCCCCCCC
Q 029517 41 VPTVGLNIGRIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFE------DSKTALEKVLRNEDLQGA 114 (192)
Q Consensus 41 ~~T~g~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ii~v~D~~~~~s~~------~~~~~~~~i~~~~~~~~~ 114 (192)
..|+......+......+.||||||+++|...+..+++.+|++|+|+|+++..+.. ...+.+...... ...
T Consensus 96 GiTi~~~~~~~~~~~~~~~iiDTPG~~~f~~~~~~~~~~aD~~llVvDa~~g~~~~~~~~~~qt~e~~~~~~~~---~~~ 172 (483)
T 3p26_A 96 GVTVSICTSHFSTHRANFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASSL---GIH 172 (483)
T ss_dssp CSSCCCCEEEEECSSCEEEEECCCCCGGGHHHHHHHHTTCSEEEEEEECCC------CCCCHHHHHHHHHHHHT---TCC
T ss_pred CcceEeeeEEEecCCceEEEEECCCcHHHHHHHHHhhhhCCEEEEEEECCCCccccccchhhhHHHHHHHHHHc---CCC
Confidence 44666666778888899999999999999999999999999999999998864321 222222222222 235
Q ss_pred cEEEEEeCCCCCCC--CCHHHHH----hHcCccccCCcceEEEEeeecCCCCHHHH
Q 029517 115 PLLILANKQDLPDA--VSADELA----RYLDLKKLDERVCMFEAVSGYDGFGIKES 164 (192)
Q Consensus 115 piiiv~nK~Dl~~~--~~~~~~~----~~~~~~~~~~~~~~~~~~Sa~~~~gi~e~ 164 (192)
|+++++||+|+.+. ...+++. +++..........+++++||++|.||+++
T Consensus 173 ~iIvviNK~Dl~~~~~~~~~~i~~~~~~~l~~~g~~~~~~~~i~iSA~~g~gi~el 228 (483)
T 3p26_A 173 NLIIAMNKMDNVDWSQQRFEEIKSKLLPYLVDIGFFEDNINWVPISGFSGEGVYKI 228 (483)
T ss_dssp CEEEEEECGGGGTTCHHHHHHHHHHHHHHHHHHTCCGGGEEEEECCSSSCTTSSSS
T ss_pred cEEEEEECcCcccchHHHHHHHHHHHHHHHHHcCCCcccceEEEEeeecCCCcccc
Confidence 79999999999752 1222222 22211111223689999999999999863
No 154
>3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii}
Probab=99.67 E-value=1.2e-16 Score=133.30 Aligned_cols=82 Identities=18% Similarity=0.175 Sum_probs=66.8
Q ss_pred CCcceEEEEEEecCEEEEEEeCCCCcccHHHHHHhhhcCCEEEEEEeCCCcccHHHHHHHHHHHHhCCCCCCCcEEEEEe
Q 029517 42 PTVGLNIGRIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILAN 121 (192)
Q Consensus 42 ~T~g~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ii~v~D~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~n 121 (192)
.|+......+...+..+.+|||||+.+|...+..+++.+|++|+|+|+++..+.+....| ..+ .. .++|+++|+|
T Consensus 68 iTi~~~~~~~~~~~~~i~liDTPG~~df~~~~~~~l~~aD~allVvDa~~g~~~~t~~~~-~~~-~~---~~iPiivviN 142 (528)
T 3tr5_A 68 ISVTTSVMQFPYKDYLINLLDTPGHADFTEDTYRTLTAVDSALMVIDAAKGVEPRTIKLM-EVC-RL---RHTPIMTFIN 142 (528)
T ss_dssp CSSSSSEEEEEETTEEEEEECCCCSTTCCHHHHHGGGGCSEEEEEEETTTCSCHHHHHHH-HHH-HT---TTCCEEEEEE
T ss_pred eeEEEeEEEEEeCCEEEEEEECCCchhHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHH-HHH-HH---cCCCEEEEEe
Confidence 355555667788899999999999999999999999999999999999988777665544 222 22 3689999999
Q ss_pred CCCCCCC
Q 029517 122 KQDLPDA 128 (192)
Q Consensus 122 K~Dl~~~ 128 (192)
|+|+...
T Consensus 143 K~Dl~~~ 149 (528)
T 3tr5_A 143 KMDRDTR 149 (528)
T ss_dssp CTTSCCS
T ss_pred CCCCccc
Confidence 9999764
No 155
>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*
Probab=99.67 E-value=1.2e-16 Score=134.87 Aligned_cols=147 Identities=16% Similarity=0.151 Sum_probs=96.9
Q ss_pred ccccHHHHHHHHhhhhccCCCCCCCCCCCCcceEEEEEE----------------ecCEEEEEEeCCCCcccHHHHHHhh
Q 029517 14 TKTEFHTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIE----------------VSNSKLVFWDLGGQPGLRSIWEKYY 77 (192)
Q Consensus 14 kst~~~~l~~~~~~~~~~~~~~~~~~~~~T~g~~~~~~~----------------~~~~~~~i~D~~G~~~~~~~~~~~~ 77 (192)
|||++++|++.... ......+.+++|..+.... .....+.||||||+++|..++..++
T Consensus 18 KTTLl~~L~~~~v~------~~e~ggiT~~ig~~~~~~~~~~~~~~~~~~~~~v~~~~~~i~liDTPGhe~F~~~~~r~~ 91 (594)
T 1g7s_A 18 KTTLLDHIRGSAVA------SREAGGITQHIGATEIPMDVIEGICGDFLKKFSIRETLPGLFFIDTPGHEAFTTLRKRGG 91 (594)
T ss_dssp HHHHHHHHHHHHHS------CC----CCCBTTEEEEEHHHHHHHSCGGGGGCGGGGTCCEEEEECCCTTSCCTTSBCSSS
T ss_pred HHHHHHHHhcccCc------cccCCceecccCeEEEeechhhhhccccccccccccccCCEEEEECCCcHHHHHHHHHHH
Confidence 89999999865332 2222234556666554321 1122699999999999988888888
Q ss_pred hcCCEEEEEEeCCCc---ccHHHHHHHHHHHHhCCCCCCCcEEEEEeCCCCCCCCC--------------HHH-------
Q 029517 78 EEAHAVVFVIDAACP---SRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAVS--------------ADE------- 133 (192)
Q Consensus 78 ~~~d~ii~v~D~~~~---~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~~~~--------------~~~------- 133 (192)
+.+|++|+|+|+++. ++++.+. .+.. .++|+++++||+|+..... .+.
T Consensus 92 ~~aD~aILVvDa~~Gv~~qT~e~l~----~l~~----~~vPiIVViNKiDl~~~~~~~~~~~~~e~sa~~~~~v~~~~~e 163 (594)
T 1g7s_A 92 ALADLAILIVDINEGFKPQTQEALN----ILRM----YRTPFVVAANKIDRIHGWRVHEGRPFMETFSKQDIQVQQKLDT 163 (594)
T ss_dssp BSCSEEEEEEETTTCCCHHHHHHHH----HHHH----TTCCEEEEEECGGGSTTCCCCTTCCHHHHHTTSCHHHHHHHHH
T ss_pred hhCCEEEEEEECCCCccHhHHHHHH----HHHH----cCCeEEEEecccccccccccccCCchHHHHHHhHHHHHHHHHH
Confidence 999999999999983 4444332 2222 4689999999999964211 011
Q ss_pred ----HHhHcCcccc----------CCcceEEEEeeecCCCCHHHHHHHHHHHHHh
Q 029517 134 ----LARYLDLKKL----------DERVCMFEAVSGYDGFGIKESVEWLVEVMER 174 (192)
Q Consensus 134 ----~~~~~~~~~~----------~~~~~~~~~~Sa~~~~gi~e~~~~i~~~i~~ 174 (192)
+.+.+....+ .....+++++||++|.||++++++|...+..
T Consensus 164 ~i~ei~~~L~e~gl~~e~~~~l~~~~~~vpvv~vSA~tG~GI~eLl~~I~~~~~~ 218 (594)
T 1g7s_A 164 KVYELVGKLHEEGFESERFDRVTDFASQVSIIPISAITGEGIPELLTMLMGLAQQ 218 (594)
T ss_dssp HHHHHHHHHHHTTCEEEEGGGCSCTTTEEEEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCcchHHHHHHHhccCcceEEEEeccCCCCchhHHHHHHhhccc
Confidence 1111110001 0235689999999999999999999987764
No 156
>1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A*
Probab=99.66 E-value=6.2e-17 Score=132.36 Aligned_cols=122 Identities=18% Similarity=0.214 Sum_probs=81.7
Q ss_pred CCCcceEEEEEEecCEEEEEEeCCCCcccHHHHHHhhhcCCEEEEEEeCCCcccHHHHHHH-------HHHHHhCCCCCC
Q 029517 41 VPTVGLNIGRIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTA-------LEKVLRNEDLQG 113 (192)
Q Consensus 41 ~~T~g~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ii~v~D~~~~~s~~~~~~~-------~~~i~~~~~~~~ 113 (192)
..|++..+..+.....++.+|||||+++|...+..+++.+|++|+|+|+++ .+|+....| +...... ..
T Consensus 69 giTi~~~~~~~~~~~~~~~iiDtpG~~~f~~~~~~~~~~aD~~ilVvDa~~-gsfe~~~~~~~qt~~~~~~~~~~---~~ 144 (435)
T 1jny_A 69 GVTINLTFMRFETKKYFFTIIDAPGHRDFVKNMITGASQADAAILVVSAKK-GEYEAGMSVEGQTREHIILAKTM---GL 144 (435)
T ss_dssp --------CEEECSSCEEEECCCSSSTTHHHHHHHTSSCCSEEEEEEECST-THHHHHHSTTCHHHHHHHHHHHT---TC
T ss_pred CceeEeeEEEEecCCeEEEEEECCCcHHHHHHHHhhhhhcCEEEEEEECCC-CccccccccchHHHHHHHHHHHc---CC
Confidence 456666666788888999999999999999999999999999999999998 667643332 2222222 22
Q ss_pred CcEEEEEeCCCCCCCC-C-------HHHHHhHcCccccCCcceEEEEeeecCCCCHHHHHH
Q 029517 114 APLLILANKQDLPDAV-S-------ADELARYLDLKKLDERVCMFEAVSGYDGFGIKESVE 166 (192)
Q Consensus 114 ~piiiv~nK~Dl~~~~-~-------~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~e~~~ 166 (192)
.|+++++||+|+.+.. + .+++.+++..........+++++||++|.|+.++++
T Consensus 145 ~~iivviNK~Dl~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~i~iSA~~g~~v~e~~~ 205 (435)
T 1jny_A 145 DQLIVAVNKMDLTEPPYDEKRYKEIVDQVSKFMRSYGFNTNKVRFVPVVAPSGDNITHKSE 205 (435)
T ss_dssp TTCEEEEECGGGSSSTTCHHHHHHHHHHHHHHHHHTTCCCTTCEEEECBTTTTBTTTBCCS
T ss_pred CeEEEEEEcccCCCccccHHHHHHHHHHHHHHHHHcCCCcCCceEEEeecccCcccccccc
Confidence 4699999999997621 1 233444443111112247899999999999987654
No 157
>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}
Probab=99.66 E-value=1.3e-16 Score=121.91 Aligned_cols=111 Identities=21% Similarity=0.286 Sum_probs=88.8
Q ss_pred eCCCCcccHHHHHHhhhcCCEEEEEEeCCCcccHHHHHHHHH---HHHhCC-CCCCCcEEEEEeC-CCCCCCCCHHHHHh
Q 029517 62 DLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALE---KVLRNE-DLQGAPLLILANK-QDLPDAVSADELAR 136 (192)
Q Consensus 62 D~~G~~~~~~~~~~~~~~~d~ii~v~D~~~~~s~~~~~~~~~---~i~~~~-~~~~~piiiv~nK-~Dl~~~~~~~~~~~ 136 (192)
|.+||+..+..|..|++++|++|+|+|++|.+.++ ....+. .++... ...+.|++|++|| .|++.+.+..++.+
T Consensus 193 ~~GGQ~~lRplWr~Yy~~tdglIfVVDSsDreRle-ak~EL~eL~~mL~e~~~l~~apLLVfANKkQDlp~Ams~~EI~e 271 (312)
T 3l2o_B 193 QQGSRYSVIPQIQKVCEVVDGFIYVANAEAHKRHE-WQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDVKRMPCFYLAH 271 (312)
T ss_dssp ----CCCCCHHHHHHHHHCSEEEECCBCBTTCCCC-HHHHHHHHHHHHCHHHHCTTCCEEEEEEESSTTSCBCCHHHHHH
T ss_pred CCCCHHHHHHHHHHHhcCCCEEEEEecCCcHhHHH-HHHHHHHHHHHhcchhhcCCCeEEEEeCCcccccCCCCHHHHHH
Confidence 35789999999999999999999999999988665 333333 333221 1257999999996 69999999999999
Q ss_pred HcCccccCCcceEEEEeeecCCCCHHHHHHHHHHHHHh
Q 029517 137 YLDLKKLDERVCMFEAVSGYDGFGIKESVEWLVEVMER 174 (192)
Q Consensus 137 ~~~~~~~~~~~~~~~~~Sa~~~~gi~e~~~~i~~~i~~ 174 (192)
.+.+..+ .+.+.+..|||.+|+|+.|.++||++.+.+
T Consensus 272 ~L~L~~l-~r~W~Iq~csA~tGeGL~EGldWL~~~l~~ 308 (312)
T 3l2o_B 272 ELHLNLL-NHPWLVQDTEAETLTGFLNGIEWILEEVES 308 (312)
T ss_dssp HTTGGGG-CSCEEEEEEETTTCTTHHHHHHHHHHHSCC
T ss_pred HcCCccC-CCcEEEEecccCCCcCHHHHHHHHHHHHHh
Confidence 9998766 478999999999999999999999987754
No 158
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=99.65 E-value=3.5e-16 Score=128.06 Aligned_cols=150 Identities=21% Similarity=0.224 Sum_probs=93.5
Q ss_pred ccccHHHHHHHHhhhhccCCCCCCCCCCCCcceEEEEEEecCEEEEEEeCCCCcccHHH------------HHHhhhcCC
Q 029517 14 TKTEFHTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPGLRSI------------WEKYYEEAH 81 (192)
Q Consensus 14 kst~~~~l~~~~~~~~~~~~~~~~~~~~~T~g~~~~~~~~~~~~~~i~D~~G~~~~~~~------------~~~~~~~~d 81 (192)
|||++|+|++......+..++.+.+ .....+...+..+.+|||+|..+.... ...+++.+|
T Consensus 193 KSTLln~l~g~~~~~v~~~~gtT~d-------~~~~~i~~~g~~~~l~Dt~G~~~~~~~~~~~~e~~~~~~~~~~i~~ad 265 (439)
T 1mky_A 193 KSTLFNAILNKERALVSPIPGTTRD-------PVDDEVFIDGRKYVFVDTAGLRRKSRVEPRTVEKYSNYRVVDSIEKAD 265 (439)
T ss_dssp HHHHHHHHHTSTTEEECCCC-------------CCEEEEETTEEEEESSCSCC-----------CCSCCHHHHHHHHHCS
T ss_pred HHHHHHHHhCCcccccCCCCCCcCC-------ceEEEEEECCEEEEEEECCCCccccccchhhHHHHHHHHHHHHHhhCC
Confidence 6778887776544333333332221 122345566778999999997543221 235678899
Q ss_pred EEEEEEeCCCcccHHHHHHHHHHHHhCCCCCCCcEEEEEeCCCCCCC--CCHHHHHhHcCccccCCcceEEEEeeecCCC
Q 029517 82 AVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDA--VSADELARYLDLKKLDERVCMFEAVSGYDGF 159 (192)
Q Consensus 82 ~ii~v~D~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 159 (192)
++++|+|+++..+.+. .++...... .++|+++++||+|+.+. ...+++.+.+..........+++++||++|.
T Consensus 266 ~vllv~d~~~~~~~~~--~~i~~~l~~---~~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~ 340 (439)
T 1mky_A 266 VVVIVLDATQGITRQD--QRMAGLMER---RGRASVVVFNKWDLVVHREKRYDEFTKLFREKLYFIDYSPLIFTSADKGW 340 (439)
T ss_dssp EEEEEEETTTCCCHHH--HHHHHHHHH---TTCEEEEEEECGGGSTTGGGCHHHHHHHHHHHCGGGTTSCEEECBTTTTB
T ss_pred EEEEEEeCCCCCCHHH--HHHHHHHHH---cCCCEEEEEECccCCCchhhHHHHHHHHHHHHhccCCCCcEEEEECCCCC
Confidence 9999999988766654 233333333 47999999999998753 2233333222100011235689999999999
Q ss_pred CHHHHHHHHHHHHHhc
Q 029517 160 GIKESVEWLVEVMERS 175 (192)
Q Consensus 160 gi~e~~~~i~~~i~~~ 175 (192)
||+++|+.+.+.+...
T Consensus 341 gv~~l~~~i~~~~~~~ 356 (439)
T 1mky_A 341 NIDRMIDAMNLAYASY 356 (439)
T ss_dssp SHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhh
Confidence 9999999999877653
No 159
>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A*
Probab=99.65 E-value=2.3e-16 Score=127.55 Aligned_cols=156 Identities=10% Similarity=0.012 Sum_probs=102.7
Q ss_pred ccccHHHHHHHHhhhh-cc------CCCCCC-CCCCCCcceEEEEEEecCEEEEEEeCCCCcccHHHHHHhhhcCCEEEE
Q 029517 14 TKTEFHTLLEKLKSVY-SN------VEGLPP-DRIVPTVGLNIGRIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVF 85 (192)
Q Consensus 14 kst~~~~l~~~~~~~~-~~------~~~~~~-~~~~~T~g~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ii~ 85 (192)
|||++++|++...... .. ...... .....|++..+..+.....++.+|||||+++|......+++.+|++|+
T Consensus 16 KSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~~~iiDtpG~~~f~~~~~~~~~~aD~~il 95 (397)
T 1d2e_A 16 KTTLTAAITKILAEGGGAKFKKYEEIDNAPEERARGITINAAHVEYSTAARHYAHTDCPGHADYVKNMITGTAPLDGCIL 95 (397)
T ss_dssp HHHHHHHHHHHHHHTTSBCCCCHHHHHSCCEEEETTEEEECEEEEEECSSCEEEEEECSSHHHHHHHHHHTSSCCSEEEE
T ss_pred HHHHHHHHhChhhhcCccccchhhhhhcCHHHHhcCcEEEeeeEEeccCCeEEEEEECCChHHHHHHHHhhHhhCCEEEE
Confidence 8999999987643210 00 000000 023446666555666677899999999999998888889999999999
Q ss_pred EEeCCCcccHHHHHHHHHHHHhCCCCCCCc-EEEEEeCCCCCCCC-----CHHHHHhHcCccccCCcceEEEEeeecCCC
Q 029517 86 VIDAACPSRFEDSKTALEKVLRNEDLQGAP-LLILANKQDLPDAV-----SADELARYLDLKKLDERVCMFEAVSGYDGF 159 (192)
Q Consensus 86 v~D~~~~~s~~~~~~~~~~i~~~~~~~~~p-iiiv~nK~Dl~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 159 (192)
|+|+++....+.. +.+..+.. .++| +++++||+|+.+.. ..+++.++++...+.....+++++||++|.
T Consensus 96 Vvda~~g~~~qt~-e~l~~~~~----~~vp~iivviNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~i~~SA~~g~ 170 (397)
T 1d2e_A 96 VVAANDGPMPQTR-EHLLLARQ----IGVEHVVVYVNKADAVQDSEMVELVELEIRELLTEFGYKGEETPIIVGSALCAL 170 (397)
T ss_dssp EEETTTCSCHHHH-HHHHHHHH----TTCCCEEEEEECGGGCSCHHHHHHHHHHHHHHHHHTTSCTTTSCEEECCHHHHH
T ss_pred EEECCCCCCHHHH-HHHHHHHH----cCCCeEEEEEECcccCCCHHHHHHHHHHHHHHHHHcCCCcccCcEEEeehhhcc
Confidence 9999986544433 33333332 3678 78999999997411 112344444321121224789999999976
Q ss_pred C----------HHHHHHHHHHHHHh
Q 029517 160 G----------IKESVEWLVEVMER 174 (192)
Q Consensus 160 g----------i~e~~~~i~~~i~~ 174 (192)
| +.++++.|.+.+..
T Consensus 171 n~~~~~~~~g~i~~Ll~~l~~~~p~ 195 (397)
T 1d2e_A 171 EQRDPELGLKSVQKLLDAVDTYIPV 195 (397)
T ss_dssp TTCCTTTTHHHHHHHHHHHHHHSCC
T ss_pred cccCCCccCCcHHHHHHHHHHhCCC
Confidence 4 88999988876653
No 160
>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus}
Probab=99.65 E-value=2.3e-17 Score=137.36 Aligned_cols=148 Identities=16% Similarity=0.117 Sum_probs=98.4
Q ss_pred hccccHHHHHHHHhhhhccCCCCCCCCCCCCcceEEEEEEe-cCEEEEEEeCCCCcccHHHHHHhhhcCCEEEEEEeCCC
Q 029517 13 FTKTEFHTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEV-SNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAAC 91 (192)
Q Consensus 13 ~kst~~~~l~~~~~~~~~~~~~~~~~~~~~T~g~~~~~~~~-~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ii~v~D~~~ 91 (192)
=|||++|+|.+...... ..+ ..|..+....+.. .+..+.|||||||+.|..++..+++.+|++|+|+|+++
T Consensus 16 GKTSLl~~L~~~~~~~~-~~~-------giT~~i~~~~v~~~~g~~i~~iDTPGhe~f~~~~~~~~~~aD~vILVVDa~d 87 (537)
T 3izy_P 16 GKTTLLDKLRKTQVAAM-EAG-------GITQHIGAFLVSLPSGEKITFLDTPGHAAFSAMRARGTQVTDIVILVVAADD 87 (537)
T ss_dssp THHHHHHHHHHHHHHHS-SSC-------CBCCCTTSCCBCSSCSSCCBCEECSSSCCTTTSBBSSSBSBSSCEEECBSSS
T ss_pred CHHHHHHHHhCCCcccc-cCC-------ceeEEEeEEEEEeCCCCEEEEEECCChHHHHHHHHHHHccCCEEEEEEECCC
Confidence 38999999986554321 111 1122222222322 34578999999999999988889999999999999998
Q ss_pred cccHHHHHHHHHHHHhCCCCCCCcEEEEEeCCCCCCCC---CHHHHHhHcCccccCCcceEEEEeeecCCCCHHHHHHHH
Q 029517 92 PSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAV---SADELARYLDLKKLDERVCMFEAVSGYDGFGIKESVEWL 168 (192)
Q Consensus 92 ~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~~~---~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~e~~~~i 168 (192)
....+....+ ..+.. .++|+++++||+|+.+.. ...++.+...........++++++||++|.|+++++++|
T Consensus 88 g~~~qt~e~l-~~~~~----~~vPiIVViNKiDl~~~~~~~v~~~l~~~~~~~e~~~~~~~iv~vSAktG~GI~eLle~I 162 (537)
T 3izy_P 88 GVMKQTVESI-QHAKD----AHVPIVLAINKCDKAEADPEKVKKELLAYDVVCEDYGGDVQAVHVSALTGENMMALAEAT 162 (537)
T ss_dssp CCCHHHHHHH-HHHHT----TTCCEEECCBSGGGTTTSCCSSSSHHHHTTSCCCCSSSSEEECCCCSSSSCSSHHHHHHH
T ss_pred CccHHHHHHH-HHHHH----cCCcEEEEEecccccccchHHHHHHHHhhhhhHHhcCCCceEEEEECCCCCCchhHHHHH
Confidence 7665554333 32222 368999999999997521 122232221100001125789999999999999999999
Q ss_pred HHHHH
Q 029517 169 VEVME 173 (192)
Q Consensus 169 ~~~i~ 173 (192)
...+.
T Consensus 163 ~~l~~ 167 (537)
T 3izy_P 163 IALAE 167 (537)
T ss_dssp HHHHT
T ss_pred HHhhh
Confidence 88765
No 161
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=99.64 E-value=1.6e-16 Score=124.06 Aligned_cols=142 Identities=16% Similarity=0.159 Sum_probs=92.3
Q ss_pred ccccHHHHHHHHhhhhccCCCCCCCCCCCCcceEEEEEEecCEEEEEEeCCCCc-ccHHH--------HHHhhhcCCEEE
Q 029517 14 TKTEFHTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQP-GLRSI--------WEKYYEEAHAVV 84 (192)
Q Consensus 14 kst~~~~l~~~~~~~~~~~~~~~~~~~~~T~g~~~~~~~~~~~~~~i~D~~G~~-~~~~~--------~~~~~~~~d~ii 84 (192)
|||++|+|+++.....+..++ .|.......+......+.+|||||+. ..... ...+++.+|+++
T Consensus 21 KSTLln~L~g~~~~i~s~~~~-------tTr~~~~gi~~~~~~~i~~iDTpG~~~~~~~~l~~~~~~~~~~~l~~~D~vl 93 (301)
T 1ega_A 21 KSTLLNKLLGQKISITSRKAQ-------TTRHRIVGIHTEGAYQAIYVDTPGLHMEEKRAINRLMNKAASSSIGDVELVI 93 (301)
T ss_dssp HHHHHHHHHTCSEEECCCCSS-------CCSSCEEEEEEETTEEEEEESSSSCCHHHHHHHHHHHTCCTTSCCCCEEEEE
T ss_pred HHHHHHHHHCCCccccCCCCC-------cceeeEEEEEEECCeeEEEEECcCCCccchhhHHHHHHHHHHHHHhcCCEEE
Confidence 899999998764332222221 22222233456678899999999987 33222 233567799999
Q ss_pred EEEeCCCcccHHHHHHHHHHHHhCCCCCCCcEEEEEeCCCCCC--CCCHHHHHhHcCccccCCcce-EEEEeeecCCCCH
Q 029517 85 FVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPD--AVSADELARYLDLKKLDERVC-MFEAVSGYDGFGI 161 (192)
Q Consensus 85 ~v~D~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~--~~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~gi 161 (192)
+|+|+++ +.....++...... .+.|+++++||+|+.. ....+.+.++.+ ..++ .++++||++|.|+
T Consensus 94 ~Vvd~~~---~~~~~~~i~~~l~~---~~~P~ilvlNK~D~~~~~~~~~~~l~~l~~-----~~~~~~~i~iSA~~g~~v 162 (301)
T 1ega_A 94 FVVEGTR---WTPDDEMVLNKLRE---GKAPVILAVNKVDNVQEKADLLPHLQFLAS-----QMNFLDIVPISAETGLNV 162 (301)
T ss_dssp EEEETTC---CCHHHHHHHHHHHS---SSSCEEEEEESTTTCCCHHHHHHHHHHHHT-----TSCCSEEEECCTTTTTTH
T ss_pred EEEeCCC---CCHHHHHHHHHHHh---cCCCEEEEEECcccCccHHHHHHHHHHHHH-----hcCcCceEEEECCCCCCH
Confidence 9999976 22333454444443 4689999999999875 111122333333 2233 7899999999999
Q ss_pred HHHHHHHHHHHH
Q 029517 162 KESVEWLVEVME 173 (192)
Q Consensus 162 ~e~~~~i~~~i~ 173 (192)
+++++++.+.+.
T Consensus 163 ~~l~~~i~~~l~ 174 (301)
T 1ega_A 163 DTIAAIVRKHLP 174 (301)
T ss_dssp HHHHHHHHTTCC
T ss_pred HHHHHHHHHhCC
Confidence 999999987654
No 162
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=99.64 E-value=5.7e-17 Score=133.31 Aligned_cols=142 Identities=18% Similarity=0.259 Sum_probs=89.9
Q ss_pred ccccHHHHHHHHhhhhccCCCCCCCCCCCCcceEEEEEEecCEEEEEEeCCC--------CcccHHHHHHhhhcCCEEEE
Q 029517 14 TKTEFHTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGG--------QPGLRSIWEKYYEEAHAVVF 85 (192)
Q Consensus 14 kst~~~~l~~~~~~~~~~~~~~~~~~~~~T~g~~~~~~~~~~~~~~i~D~~G--------~~~~~~~~~~~~~~~d~ii~ 85 (192)
|||++|+|+++........++ .|....+......+..+.+||||| ++.+...+..+++.+|++|+
T Consensus 36 KSTL~n~l~~~~~~~v~~~~g-------~t~~~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~~~~~~~~~~~~ad~il~ 108 (456)
T 4dcu_A 36 KSTIFNRIAGERISIVEDTPG-------VTRDRIYSSAEWLNYDFNLIDTGGIDIGDEPFLAQIRQQAEIAMDEADVIIF 108 (456)
T ss_dssp HHHHHHHHEEEEEC------------------CEEEECTTCSSCCEEECCCC------CCHHHHHHHHHHHHHHCSEEEE
T ss_pred HHHHHHHHhCCCCcccCCCCC-------cceeEEEEEEEECCceEEEEECCCCCCcchHHHHHHHHHHHhhHhhCCEEEE
Confidence 788888887654332222222 222233444555577899999999 66777888889999999999
Q ss_pred EEeCCCcccHHHHHHHHHHHHhCCCCCCCcEEEEEeCCCCCCCCCHHHHHhHcCccccCCcceEEEEeeecCCCCHHHHH
Q 029517 86 VIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAVSADELARYLDLKKLDERVCMFEAVSGYDGFGIKESV 165 (192)
Q Consensus 86 v~D~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~e~~ 165 (192)
|+|..+..+ ....++..++.. .++|+++|+||+|+.+.. +.+.++.. ......+++||++|.|+.+++
T Consensus 109 VvD~~~~~~--~~d~~l~~~l~~---~~~pvilV~NK~D~~~~~--~~~~e~~~-----lg~~~~~~iSA~~g~gv~~L~ 176 (456)
T 4dcu_A 109 MVNGREGVT--AADEEVAKILYR---TKKPVVLAVNKLDNTEMR--ANIYDFYS-----LGFGEPYPISGTHGLGLGDLL 176 (456)
T ss_dssp EEESSSCSC--HHHHHHHHHHTT---CCSCEEEEEECC-----------CCSGG-----GSSSSEEECCTTTCTTHHHHH
T ss_pred EEeCCCCCC--hHHHHHHHHHHH---cCCCEEEEEECccchhhh--hhHHHHHH-----cCCCceEEeecccccchHHHH
Confidence 999876533 333566666655 579999999999986421 12222222 111245699999999999999
Q ss_pred HHHHHHHHh
Q 029517 166 EWLVEVMER 174 (192)
Q Consensus 166 ~~i~~~i~~ 174 (192)
+++.+.+..
T Consensus 177 ~~i~~~l~~ 185 (456)
T 4dcu_A 177 DAVAEHFKN 185 (456)
T ss_dssp HHHHTTGGG
T ss_pred HHHHhhccc
Confidence 999886653
No 163
>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...
Probab=99.63 E-value=1.5e-15 Score=123.10 Aligned_cols=153 Identities=14% Similarity=0.046 Sum_probs=100.6
Q ss_pred ccccHHHHHHHHhhhhccCCCCCCC-----------CCCCCcceEEEEEEecCEEEEEEeCCCCcccHHHHHHhhhcCCE
Q 029517 14 TKTEFHTLLEKLKSVYSNVEGLPPD-----------RIVPTVGLNIGRIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHA 82 (192)
Q Consensus 14 kst~~~~l~~~~~~~~~~~~~~~~~-----------~~~~T~g~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ 82 (192)
|||++++|++...... .. ..+.. ....|+......+......+.+|||||+++|......+++.+|+
T Consensus 24 KSTLi~~L~~~~~~~g-~~-~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~~~iiDtpG~~~f~~~~~~~~~~aD~ 101 (405)
T 2c78_A 24 KTTLTAALTYVAAAEN-PN-VEVKDYGDIDKAPEERARGITINTAHVEYETAKRHYSHVDCPGHADYIKNMITGAAQMDG 101 (405)
T ss_dssp HHHHHHHHHHHHHHSC-TT-SCCCCHHHHSCSHHHHHHTCCCSCEEEEEECSSCEEEEEECCCSGGGHHHHHHHHTTCSS
T ss_pred HHHHHHHHHhhhhhcC-cc-ccccchhhccCCHHHHHcCCCEEeeeeEeccCCeEEEEEECCChHHHHHHHHHHHHHCCE
Confidence 8999999987543210 00 00000 12335555555566677899999999999999999899999999
Q ss_pred EEEEEeCCCcccHHHHHHHHHHHHhCCCCCCCc-EEEEEeCCCCCCCCC-----HHHHHhHcCccccCCcceEEEEeeec
Q 029517 83 VVFVIDAACPSRFEDSKTALEKVLRNEDLQGAP-LLILANKQDLPDAVS-----ADELARYLDLKKLDERVCMFEAVSGY 156 (192)
Q Consensus 83 ii~v~D~~~~~s~~~~~~~~~~i~~~~~~~~~p-iiiv~nK~Dl~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~Sa~ 156 (192)
+|+|+|+++.... ...+++..+... ++| +++++||+|+..... .+++.+++..........+++++||+
T Consensus 102 ~ilVvda~~g~~~-qt~~~l~~~~~~----~ip~iivviNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~i~~SA~ 176 (405)
T 2c78_A 102 AILVVSAADGPMP-QTREHILLARQV----GVPYIVVFMNKVDMVDDPELLDLVEMEVRDLLNQYEFPGDEVPVIRGSAL 176 (405)
T ss_dssp EEEEEETTTCCCH-HHHHHHHHHHHT----TCCCEEEEEECGGGCCCHHHHHHHHHHHHHHHHHTTSCTTTSCEEECCHH
T ss_pred EEEEEECCCCCcH-HHHHHHHHHHHc----CCCEEEEEEECccccCcHHHHHHHHHHHHHHHHHhcccccCCCEEEccHH
Confidence 9999999876543 344555544433 577 899999999974111 11333443311111224789999999
Q ss_pred CCCC------------------HHHHHHHHHHHHH
Q 029517 157 DGFG------------------IKESVEWLVEVME 173 (192)
Q Consensus 157 ~~~g------------------i~e~~~~i~~~i~ 173 (192)
+|.| +.+++++|.+.+.
T Consensus 177 ~g~~v~~~~~~~~~~~~~~~~~i~~Ll~~l~~~lp 211 (405)
T 2c78_A 177 LALEQMHRNPKTRRGENEWVDKIWELLDAIDEYIP 211 (405)
T ss_dssp HHHHHHHHCTTCCTTSCHHHHHHHHHHHHHHHHSC
T ss_pred HhhhhhccccccccCCCcccccHHHHHHHHHhhcC
Confidence 9987 6777777766554
No 164
>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli}
Probab=99.61 E-value=1.3e-16 Score=131.73 Aligned_cols=141 Identities=20% Similarity=0.224 Sum_probs=91.4
Q ss_pred hccccHHHHHHHHhhhhccCCCCCCCCCCCCcceEEEEEEecCEEEEEEeCCCCcccHHHHHHhhhcCCEEEEEEeCCCc
Q 029517 13 FTKTEFHTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACP 92 (192)
Q Consensus 13 ~kst~~~~l~~~~~~~~~~~~~~~~~~~~~T~g~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ii~v~D~~~~ 92 (192)
=|||++++|.+.... ..+. ...|+......+..++..+.|||||||+.|..++...++.+|++|+|+|+++.
T Consensus 16 GKTTLl~~L~~~~v~-~~e~-------~GIT~~i~~~~v~~~~~~i~~iDTPGhe~f~~~~~~~~~~aD~aILVVda~~g 87 (501)
T 1zo1_I 16 GKTSLLEYIRSTKVA-SGEA-------GGITQHIGAYHVETENGMITFLDTPGHAAFTSMRARGAQATDIVVLVVAADDG 87 (501)
T ss_dssp SSHHHHHHHHHHHHS-BTTB-------CCCCCCSSCCCCCTTSSCCCEECCCTTTCCTTSBCSSSBSCSSEEEEEETTTB
T ss_pred CHHHHHHHHHcCCCc-cccC-------CCeeEeEEEEEEEECCEEEEEEECCCcHHHHHHHHHHHhhCCEEEEEeecccC
Confidence 389999998764321 0011 11122222223444556889999999999988888888999999999999874
Q ss_pred ---ccHHHHHHHHHHHHhCCCCCCCcEEEEEeCCCCCCCCCHHHHHhHcCcccc--CC--cceEEEEeeecCCCCHHHHH
Q 029517 93 ---SRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAVSADELARYLDLKKL--DE--RVCMFEAVSGYDGFGIKESV 165 (192)
Q Consensus 93 ---~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~--~~--~~~~~~~~Sa~~~~gi~e~~ 165 (192)
++.+.+ ..+.. .+.|+++++||+|+.+... +.+.+.+..... .. ..++++++||++|.|+++++
T Consensus 88 ~~~qT~e~l----~~~~~----~~vPiIVviNKiDl~~~~~-~~v~~~l~~~~~~~~~~~~~~~~v~vSAktG~gI~eLl 158 (501)
T 1zo1_I 88 VMPQTIEAI----QHAKA----AQVPVVVAVNKIDKPEADP-DRVKNELSQYGILPEEWGGESQFVHVSAKAGTGIDELL 158 (501)
T ss_dssp SCTTTHHHH----HHHHH----TTCCEEEEEECSSSSTTCC-CCTTCCCCCCCCCTTCCSSSCEEEECCTTTCTTCTTHH
T ss_pred ccHHHHHHH----HHHHh----cCceEEEEEEeccccccCH-HHHHHHHHHhhhhHHHhCCCccEEEEeeeeccCcchhh
Confidence 333332 22222 3689999999999975321 122222210000 11 23789999999999999999
Q ss_pred HHHHH
Q 029517 166 EWLVE 170 (192)
Q Consensus 166 ~~i~~ 170 (192)
++|..
T Consensus 159 e~I~~ 163 (501)
T 1zo1_I 159 DAILL 163 (501)
T ss_dssp HHTTT
T ss_pred hhhhh
Confidence 99875
No 165
>1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A
Probab=99.61 E-value=5.2e-17 Score=133.86 Aligned_cols=122 Identities=25% Similarity=0.305 Sum_probs=69.1
Q ss_pred CCCCcceEEEEEEecCEEEEEEeCCCCcccHHHHHHhhhcCCEEEEEEeCCCcc---cHH---HHHHHHHHHHhCCCCCC
Q 029517 40 IVPTVGLNIGRIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPS---RFE---DSKTALEKVLRNEDLQG 113 (192)
Q Consensus 40 ~~~T~g~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ii~v~D~~~~~---s~~---~~~~~~~~i~~~~~~~~ 113 (192)
..+|++..+..+...+.++.|||||||++|...+..+++.+|++|+|+|+++.. +|+ ...+.+.... . .+
T Consensus 105 ~giTi~~~~~~~~~~~~~~~iiDtPGh~~f~~~~~~~~~~aD~~ilVvDa~~g~~e~sf~~~~qt~e~l~~~~-~---~~ 180 (467)
T 1r5b_A 105 KGKTVEVGRAYFETEHRRFSLLDAPGHKGYVTNMINGASQADIGVLVISARRGEFEAGFERGGQTREHAVLAR-T---QG 180 (467)
T ss_dssp --------CCEEECSSEEEEECCCCC-----------TTSCSEEEEEEECSTTHHHHTTSTTCCHHHHHHHHH-H---TT
T ss_pred cCceEEeeeEEEecCCeEEEEEECCCcHHHHHHHHhhcccCCEEEEEEeCCcCccccccCCCCcHHHHHHHHH-H---cC
Confidence 456787777778778899999999999999998888899999999999998752 121 1112222222 1 35
Q ss_pred Cc-EEEEEeCCCCCCCC-CH-------HHHHhHcCcc-ccC-CcceEEEEeeecCCCCHHHHH
Q 029517 114 AP-LLILANKQDLPDAV-SA-------DELARYLDLK-KLD-ERVCMFEAVSGYDGFGIKESV 165 (192)
Q Consensus 114 ~p-iiiv~nK~Dl~~~~-~~-------~~~~~~~~~~-~~~-~~~~~~~~~Sa~~~~gi~e~~ 165 (192)
+| +++++||+|+.... +. +++.+++... .+. ...++++++||++|.|+.+++
T Consensus 181 vp~iivviNK~Dl~~~~~~~~~~~~i~~e~~~~l~~~~g~~~~~~~~~i~vSA~~g~~i~~l~ 243 (467)
T 1r5b_A 181 INHLVVVINKMDEPSVQWSEERYKECVDKLSMFLRRVAGYNSKTDVKYMPVSAYTGQNVKDRV 243 (467)
T ss_dssp CSSEEEEEECTTSTTCSSCHHHHHHHHHHHHHHHHHHHCCCHHHHEEEEECBTTTTBTTSSCC
T ss_pred CCEEEEEEECccCCCccccHHHHHHHHHHHHHHHHHhcCCCccCCceEEeccccccccccccc
Confidence 76 99999999996421 11 1344443311 111 125789999999999999876
No 166
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=99.61 E-value=1.1e-14 Score=116.26 Aligned_cols=150 Identities=15% Similarity=0.194 Sum_probs=92.8
Q ss_pred ccccHHHHHHHHhhhhccCCCCCCCCCCCCcceEEEEEEecCEEEEEEeCCCC---------cccHHHHHHhhhcCCEEE
Q 029517 14 TKTEFHTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQ---------PGLRSIWEKYYEEAHAVV 84 (192)
Q Consensus 14 kst~~~~l~~~~~~~~~~~~~~~~~~~~~T~g~~~~~~~~~~~~~~i~D~~G~---------~~~~~~~~~~~~~~d~ii 84 (192)
|||++|+|.+... .+ .+.+.+|.+.....+...+..+.+|||+|. +.+...+. .+..+|+++
T Consensus 192 KSTLln~L~~~~~----~~----~~~~~~T~d~~~~~i~~~g~~v~l~DT~G~i~~lp~~lve~f~~tl~-~~~~aD~il 262 (364)
T 2qtf_A 192 KTSLFNSLTGLTQ----KV----DTKLFTTMSPKRYAIPINNRKIMLVDTVGFIRGIPPQIVDAFFVTLS-EAKYSDALI 262 (364)
T ss_dssp HHHHHHHHHCC-------------------CCSCEEEEEETTEEEEEEECCCBCSSCCGGGHHHHHHHHH-GGGGSSEEE
T ss_pred HHHHHHHHHCCCc----cc----cCCcccccCCEEEEEEECCEEEEEEeCCCchhcCCHHHHHHHHHHHH-HHHhCCEEE
Confidence 6777777765422 11 123345555555667777788999999996 22433433 578999999
Q ss_pred EEEeCCCcc--cHHHHHHHHHHHHhCCCCCCCcEEEEEeCCCCCCCCCHHH----HHhHcCccccCCcceEEEEeeecCC
Q 029517 85 FVIDAACPS--RFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAVSADE----LARYLDLKKLDERVCMFEAVSGYDG 158 (192)
Q Consensus 85 ~v~D~~~~~--s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~~~~~~~----~~~~~~~~~~~~~~~~~~~~Sa~~~ 158 (192)
+|+|++++. ..+.+..+...+... ...+.|+++|+||+|+.... ..+ +..+.. .......+++++||++|
T Consensus 263 ~VvD~s~~~~~~~~~~~~~~~~L~~l-~~~~~p~ilV~NK~Dl~~~~-~~~~~~~~~~l~~--~l~~~~~~~~~~SA~~g 338 (364)
T 2qtf_A 263 LVIDSTFSENLLIETLQSSFEILREI-GVSGKPILVTLNKIDKINGD-LYKKLDLVEKLSK--ELYSPIFDVIPISALKR 338 (364)
T ss_dssp EEEETTSCHHHHHHHHHHHHHHHHHH-TCCSCCEEEEEECGGGCCSC-HHHHHHHHHHHHH--HHCSCEEEEEECBTTTT
T ss_pred EEEECCCCcchHHHHHHHHHHHHHHh-CcCCCCEEEEEECCCCCCch-HHHHHHHHHHHHH--HhcCCCCcEEEEECCCC
Confidence 999998875 444443343333322 12478999999999987532 222 111111 00012457899999999
Q ss_pred CCHHHHHHHHHHHHHhcc
Q 029517 159 FGIKESVEWLVEVMERSK 176 (192)
Q Consensus 159 ~gi~e~~~~i~~~i~~~~ 176 (192)
.|+++++++|.+.+....
T Consensus 339 ~gi~~L~~~I~~~l~~~~ 356 (364)
T 2qtf_A 339 TNLELLRDKIYQLATQLS 356 (364)
T ss_dssp BSHHHHHHHHHHHHHHHC
T ss_pred cCHHHHHHHHHHHhcccC
Confidence 999999999998776543
No 167
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=99.58 E-value=3.1e-16 Score=114.08 Aligned_cols=113 Identities=19% Similarity=0.254 Sum_probs=76.0
Q ss_pred ccccHHHHHHHHhhhhccCCCCCCCCCCCCcceEEEEEEecCEEEEEEeCCCCcccHHHHHHhhhc----CCEEEEEEeC
Q 029517 14 TKTEFHTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPGLRSIWEKYYEE----AHAVVFVIDA 89 (192)
Q Consensus 14 kst~~~~l~~~~~~~~~~~~~~~~~~~~~T~g~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~----~d~ii~v~D~ 89 (192)
|||++|+|.+.... .....+.|+.+..+ ..+.+.+|||||++.+...+..+++. +|++++|+|+
T Consensus 61 KSsll~~l~~~~~~-------~~~~~~~~~~~~~~-----~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~i~v~d~ 128 (193)
T 2ged_A 61 KTSLLTLLTTDSVR-------PTVVSQEPLSAADY-----DGSGVTLVDFPGHVKLRYKLSDYLKTRAKFVKGLIFMVDS 128 (193)
T ss_dssp HHHHHHHHHHSSCC-------------------CC-----CCTTCSEEEETTCCBSSCCHHHHHHHHGGGEEEEEEEEET
T ss_pred HHHHHHHHhcCCCC-------cccccCCCceeeee-----cCCeEEEEECCCCchHHHHHHHHHHhhcccCCEEEEEEEC
Confidence 56666666543211 11223445554433 46789999999999887777777766 8999999999
Q ss_pred C-CcccHHHHHHHHHHHHhCC---CCCCCcEEEEEeCCCCCCCCCHHHHHhHc
Q 029517 90 A-CPSRFEDSKTALEKVLRNE---DLQGAPLLILANKQDLPDAVSADELARYL 138 (192)
Q Consensus 90 ~-~~~s~~~~~~~~~~i~~~~---~~~~~piiiv~nK~Dl~~~~~~~~~~~~~ 138 (192)
+ +..++..+..|+..+.... ...+.|+++|+||+|+.+....+++.+.+
T Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~l 181 (193)
T 2ged_A 129 TVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFTARPPSKIKDAL 181 (193)
T ss_dssp TCCHHHHHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTCCCHHHHHHHH
T ss_pred CCCchhHHHHHHHHHHHHhhhhhccccCCCEEEEEEchHhcCCCCHHHHHHHH
Confidence 9 8889999888888887532 11479999999999998766555555444
No 168
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=99.58 E-value=6.5e-15 Score=112.36 Aligned_cols=144 Identities=14% Similarity=0.173 Sum_probs=88.3
Q ss_pred ccccHHHHHHHHhhhhccCCCCCCCCCC---CCcceEEEEEEecCEEEEEEeCCCCccc-----------HHHHHHhhhc
Q 029517 14 TKTEFHTLLEKLKSVYSNVEGLPPDRIV---PTVGLNIGRIEVSNSKLVFWDLGGQPGL-----------RSIWEKYYEE 79 (192)
Q Consensus 14 kst~~~~l~~~~~~~~~~~~~~~~~~~~---~T~g~~~~~~~~~~~~~~i~D~~G~~~~-----------~~~~~~~~~~ 79 (192)
|||++|+|++... +...+. .|.......+...+..+.||||||+..+ ......+++.
T Consensus 35 KStl~n~l~~~~~---------~~~~~~~~~~t~~~~~~~~~~~~~~i~iiDTpG~~~~~~~~~~~~~~i~~~~~~~~~~ 105 (260)
T 2xtp_A 35 KSAAGNSILRKQA---------FESKLGSQTLTKTCSKSQGSWGNREIVIIDTPDMFSWKDHCEALYKEVQRCYLLSAPG 105 (260)
T ss_dssp HHHHHHHHHTSCC---------SCCCTTSCCCCCSCEEEEEEETTEEEEEEECCGGGGSSCCCHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHhCCCC---------cccCCCCCceeeeeEEEEEEeCCCEEEEEECcCCCCCCCCHHHHHHHHHHHHHhcCCC
Confidence 6777777764321 222222 3444445556667889999999997543 2223346789
Q ss_pred CCEEEEEEeCCCcccH-HHHHHHHHHHHhCCCCCCCcEEEEEe-CCCCCCCCCHHH------------HHhHcCccccCC
Q 029517 80 AHAVVFVIDAACPSRF-EDSKTALEKVLRNEDLQGAPLLILAN-KQDLPDAVSADE------------LARYLDLKKLDE 145 (192)
Q Consensus 80 ~d~ii~v~D~~~~~s~-~~~~~~~~~i~~~~~~~~~piiiv~n-K~Dl~~~~~~~~------------~~~~~~~~~~~~ 145 (192)
+|++|+|+|++..... ..+..++..+.... ...|.++++| |+|+... .... +.+.+. .
T Consensus 106 ~d~il~V~d~~~~~~~~~~~~~~l~~~~~~~--~~~~~i~vv~nK~Dl~~~-~~~~~i~~~~~~~~~~~~~~~~-----~ 177 (260)
T 2xtp_A 106 PHVLLLVTQLGRYTSQDQQAAQRVKEIFGED--AMGHTIVLFTHKEDLNGG-SLMDYMHDSDNKALSKLVAACG-----G 177 (260)
T ss_dssp CSEEEEEEETTCCCHHHHHHHHHHHHHHCGG--GGGGEEEEEECGGGGTTC-CHHHHHHHCCCHHHHHHHHHTT-----T
T ss_pred CcEEEEEEeCCCCCHHHHHHHHHHHHHhCch--hhccEEEEEEcccccCCc-cHHHHHHhcchHHHHHHHHHhC-----C
Confidence 9999999999863322 22334444433211 1356666665 9999753 2222 222222 1
Q ss_pred cceEE--EEeeecCCCCHHHHHHHHHHHHHh
Q 029517 146 RVCMF--EAVSGYDGFGIKESVEWLVEVMER 174 (192)
Q Consensus 146 ~~~~~--~~~Sa~~~~gi~e~~~~i~~~i~~ 174 (192)
....+ +++||++|.|++++|++|.+.+..
T Consensus 178 ~~~~~~~~~~SA~~~~gv~~l~~~i~~~~~~ 208 (260)
T 2xtp_A 178 RICAFNNRAEGSNQDDQVKELMDCIEDLLME 208 (260)
T ss_dssp CEEECCTTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred eEEEecCcccccccHHHHHHHHHHHHHHHHh
Confidence 11112 789999999999999999998875
No 169
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=99.57 E-value=2.6e-15 Score=115.60 Aligned_cols=148 Identities=13% Similarity=0.113 Sum_probs=77.3
Q ss_pred ccccHHHHHHHHhhhhccCCCCCCCCCCCCcceEEEEEEe----cCEEEEEEeCCCC-------cccHHHH-------HH
Q 029517 14 TKTEFHTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEV----SNSKLVFWDLGGQ-------PGLRSIW-------EK 75 (192)
Q Consensus 14 kst~~~~l~~~~~~~~~~~~~~~~~~~~~T~g~~~~~~~~----~~~~~~i~D~~G~-------~~~~~~~-------~~ 75 (192)
|||++|+|++.-..... . +.......+|++........ ..+.+.+|||||. +.+.... ..
T Consensus 21 KSTLin~L~~~~~~~~~-~-~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~liDTpG~~d~~~~~~~~~~i~~~i~~~~~~ 98 (274)
T 3t5d_A 21 KSTLINSLFLTDLYSPE-Y-PGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVDNSNCWQPVIDYIDSKFED 98 (274)
T ss_dssp HHHHHHHHSSSCC-----------------CCCEEEEEEECC--CCEEEEEEECCCCSCCSCCTTTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCccccC-C-CCcccccCCceEEEEEEEEEecCCeEEEEEEEECCCccccccchhhHHHHHHHHHHHHHH
Confidence 78888887643211100 0 01112237788877765432 2469999999997 2344444 55
Q ss_pred hhhc-------------CCEEEEEEeCCCcccHHHHHHHHHHHHhCCCCCCCcEEEEEeCCCCCCCCCHH----HHHhHc
Q 029517 76 YYEE-------------AHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAVSAD----ELARYL 138 (192)
Q Consensus 76 ~~~~-------------~d~ii~v~D~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~~~~~~----~~~~~~ 138 (192)
|++. +|+++++++.+.......-..++..+.. ++|+++|+||+|+......+ .+.+.+
T Consensus 99 ~l~~~~~~~r~~~~d~r~~~~l~~i~~~~~~~~~~d~~~l~~l~~-----~~pvi~V~nK~D~~~~~e~~~~~~~i~~~l 173 (274)
T 3t5d_A 99 YLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDIEFMKRLHE-----KVNIIPLIAKADTLTPEECQQFKKQIMKEI 173 (274)
T ss_dssp HHHHHHSSCCCSCCCCCCCEEEEEECSCCSSCCHHHHHHHHHHTT-----TSCEEEEESSGGGSCHHHHHHHHHHHHHHH
T ss_pred HHHhhcccccccccCCceeEEEEEecCCCCCCCHHHHHHHHHHhc-----cCCEEEEEeccCCCCHHHHHHHHHHHHHHH
Confidence 5554 7899999987653222222234444422 68999999999986422222 222233
Q ss_pred CccccCCcceEEEEeeecCCCCHHHHHHHHHHHHH
Q 029517 139 DLKKLDERVCMFEAVSGYDGFGIKESVEWLVEVME 173 (192)
Q Consensus 139 ~~~~~~~~~~~~~~~Sa~~~~gi~e~~~~i~~~i~ 173 (192)
. ..+++++++||+++.|+++++++|.+.+.
T Consensus 174 ~-----~~~i~v~~~sa~~~~~~~~l~~~l~~~~p 203 (274)
T 3t5d_A 174 Q-----EHKIKIYEFPETDDEEENKLVKKIKDRLP 203 (274)
T ss_dssp H-----HTTCCCCCC-----------CHHHHHTCS
T ss_pred H-----HcCCeEEcCCCCCChhHHHHHHHHhcCCC
Confidence 2 45678899999999999999999987553
No 170
>1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A
Probab=99.57 E-value=5.1e-15 Score=121.72 Aligned_cols=120 Identities=14% Similarity=0.216 Sum_probs=82.7
Q ss_pred CCCcceEEEEEEecCEEEEEEeCCCCcccHHHHHHhhhcCCEEEEEEeCCCcc---cHH---HHHHHHHHHHhCCCCCCC
Q 029517 41 VPTVGLNIGRIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPS---RFE---DSKTALEKVLRNEDLQGA 114 (192)
Q Consensus 41 ~~T~g~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ii~v~D~~~~~---s~~---~~~~~~~~i~~~~~~~~~ 114 (192)
..|++..+..+.....++.|||||||++|......+++.+|++|+|+|+++.. +|+ ...+.+..... .++
T Consensus 70 GiTi~~~~~~~~~~~~~~~iiDtPGh~~f~~~~~~~~~~aD~~ilVvda~~g~~~~sf~~~~qt~~~~~~~~~----~~v 145 (458)
T 1f60_A 70 GITIDIALWKFETPKYQVTVIDAPGHRDFIKNMITGTSQADCAILIIAGGVGEFEAGISKDGQTREHALLAFT----LGV 145 (458)
T ss_dssp TCCCSCSCEEEECSSEEEEEEECCCCTTHHHHHHHSSSCCSEEEEEEECSHHHHHHHTCTTSHHHHHHHHHHH----TTC
T ss_pred CcEEEEEEEEEecCCceEEEEECCCcHHHHHHHHhhhhhCCEEEEEEeCCcCccccccCcchhHHHHHHHHHH----cCC
Confidence 56777777778888899999999999999999999999999999999998652 111 22233322222 245
Q ss_pred c-EEEEEeCCCCCCCC--C----HHHHHhHcCccccCCcceEEEEeeecCCCCHHHH
Q 029517 115 P-LLILANKQDLPDAV--S----ADELARYLDLKKLDERVCMFEAVSGYDGFGIKES 164 (192)
Q Consensus 115 p-iiiv~nK~Dl~~~~--~----~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~e~ 164 (192)
| +++++||+|+.+.. . .+++.+++....+.....+++++||++|.|+.++
T Consensus 146 ~~iivviNK~Dl~~~~~~~~~~i~~~~~~~l~~~g~~~~~~~~i~vSA~~g~nv~~~ 202 (458)
T 1f60_A 146 RQLIVAVNKMDSVKWDESRFQEIVKETSNFIKKVGYNPKTVPFVPISGWNGDNMIEA 202 (458)
T ss_dssp CEEEEEEECGGGGTTCHHHHHHHHHHHHHHHHHHTCCGGGCCEEECCTTTCBTTTBC
T ss_pred CeEEEEEEccccccCCHHHHHHHHHHHHHHHHHcCCCccCceEEEeecccCcCcccc
Confidence 4 99999999997311 1 1223333321111112478999999999999765
No 171
>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B
Probab=99.55 E-value=8.7e-15 Score=129.69 Aligned_cols=155 Identities=13% Similarity=0.098 Sum_probs=96.8
Q ss_pred ccccHHHHHHHHhhhh-c---cCCCCCCCCCCC----CcceEEEEEEecCEEEEEEeCCCCcccHHHHHHhhhcCCEEEE
Q 029517 14 TKTEFHTLLEKLKSVY-S---NVEGLPPDRIVP----TVGLNIGRIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVF 85 (192)
Q Consensus 14 kst~~~~l~~~~~~~~-~---~~~~~~~~~~~~----T~g~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ii~ 85 (192)
|||++++|++...... . ..........++ |+......+.....++.||||||+++|......+++.+|++|+
T Consensus 309 KSTLInrLt~~~~~~G~a~f~~~a~lD~~~~ErerGITIdva~v~f~~~~~kI~IIDTPGHedF~~~mi~gas~AD~aIL 388 (1289)
T 3avx_A 309 KTTLTAAITTVLAKTYGGAARAFDQIDNAPEEKARGITINTSHVEYDTPTRHYAHVDCPGHADYVKNMITGAAQMDGAIL 388 (1289)
T ss_dssp HHHHHHHHHHHHHHHSCC---------------------CCSCEEEECSSCEEEEEECCCHHHHHHHHHHTSCCCSEEEE
T ss_pred HHHHHHHHHhhhccccccccccccccccccccccCceeEEEEEEEEcCCCEEEEEEECCChHHHHHHHHHHHhhCCEEEE
Confidence 7888888887532110 0 000000111123 3333334566677899999999999999888889999999999
Q ss_pred EEeCCCcccHHHHHHHHHHHHhCCCCCCCc-EEEEEeCCCCCCCCC-----HHHHHhHcCccccCCcceEEEEeeecCC-
Q 029517 86 VIDAACPSRFEDSKTALEKVLRNEDLQGAP-LLILANKQDLPDAVS-----ADELARYLDLKKLDERVCMFEAVSGYDG- 158 (192)
Q Consensus 86 v~D~~~~~s~~~~~~~~~~i~~~~~~~~~p-iiiv~nK~Dl~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~Sa~~~- 158 (192)
|+|+++....+ ..+++..+.. .++| +++++||+|+.+... .+++.+++....+....++++++||++|
T Consensus 389 VVDAtdGv~~Q-TrEhL~ll~~----lgIP~IIVVINKiDLv~d~e~le~i~eEi~elLk~~G~~~~~vp~IpvSAktG~ 463 (1289)
T 3avx_A 389 VVAATDGPMPQ-TREHILLGRQ----VGVPYIIVFLNKCDMVDDEELLELVEMEVRELLSQYDFPGDDTPIVRGSALKAL 463 (1289)
T ss_dssp EEETTTCSCTT-HHHHHHHHHH----HTCSCEEEEEECCTTCCCHHHHHHHHHHHHHHHHHTTSCTTTCCEEECCSTTTT
T ss_pred EEcCCccCcHH-HHHHHHHHHH----cCCCeEEEEEeecccccchhhHHHHHHHHHHHHHhccccccceeEEEEEeccCC
Confidence 99998764332 3344443333 2577 889999999975211 1234444432112123578999999999
Q ss_pred -------CCHHHHHHHHHHHHH
Q 029517 159 -------FGIKESVEWLVEVME 173 (192)
Q Consensus 159 -------~gi~e~~~~i~~~i~ 173 (192)
.||.+++++|.+.+.
T Consensus 464 ng~~~w~eGI~eLleaL~~~Ip 485 (1289)
T 3avx_A 464 EGDAEWEAKILELAGFLDSYIP 485 (1289)
T ss_dssp TCCHHHHHHHHHHHHHHHHTSC
T ss_pred CCCccccccchhhHhHHhhhcC
Confidence 468888888877554
No 172
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=99.55 E-value=7.2e-15 Score=114.11 Aligned_cols=112 Identities=21% Similarity=0.135 Sum_probs=76.1
Q ss_pred CEEEEEEeCCCCc-------------ccHHHHHHhhhcCCEEE-EEEeCCCcccHHHHHHHHHHHHhCCCCCCCcEEEEE
Q 029517 55 NSKLVFWDLGGQP-------------GLRSIWEKYYEEAHAVV-FVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILA 120 (192)
Q Consensus 55 ~~~~~i~D~~G~~-------------~~~~~~~~~~~~~d~ii-~v~D~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~ 120 (192)
...+.+|||||.. .+...+..|++.+++++ +|+|+++..+......++..+.. .+.|+++|+
T Consensus 124 ~~~l~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~~~~~~~~----~~~~~i~V~ 199 (299)
T 2aka_B 124 VLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALKIAKEVDP----QGQRTIGVI 199 (299)
T ss_dssp CCSEEEEECCCBCSSCCSSSCTTHHHHHHHHHHHHHTSTTEEEEEEEESSSCGGGCHHHHHHHHHCT----TCSSEEEEE
T ss_pred CCCceEEeCCCCCCCcCCCCCchHHHHHHHHHHHHHcCCCeEEEEEecCCcchhhhHHHHHHHHhCC----CCCeEEEEE
Confidence 3689999999953 45667788999998776 69999875444433334444322 468999999
Q ss_pred eCCCCCCCCC--HHHHHhHcCccccCCcceEEEEeeecCCCCHHHHHHHHHHHH
Q 029517 121 NKQDLPDAVS--ADELARYLDLKKLDERVCMFEAVSGYDGFGIKESVEWLVEVM 172 (192)
Q Consensus 121 nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~e~~~~i~~~i 172 (192)
||+|+.+... .+.+...+. .......+++++||++|.|+++++++|.+..
T Consensus 200 NK~Dl~~~~~~~~~~~~~~~~--~~~~~~~~v~~~SA~~~~gi~~l~~~l~~~~ 251 (299)
T 2aka_B 200 TKLDLMDEGTDARDVLENKLL--PLRRGYIGVVNRSQKDIDGKKDITAALAAER 251 (299)
T ss_dssp ECGGGSCTTCCCHHHHTTCSS--CCTTCEEECCCCCCBCTTSCBCHHHHHHHHH
T ss_pred EccccCCCCchHHHHHhCCcC--cCCCCcEEEECCChhhccccccHHHHHHHHH
Confidence 9999975322 222221111 1111235789999999999999999998744
No 173
>1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ...
Probab=99.55 E-value=9.5e-14 Score=119.27 Aligned_cols=110 Identities=15% Similarity=0.098 Sum_probs=76.1
Q ss_pred ccccHHHHHHHHhhh--hccCCC--CCCC------CCCCCcceEEEEEEecCEEEEEEeCCCCcccHHHHHHhhhcCCEE
Q 029517 14 TKTEFHTLLEKLKSV--YSNVEG--LPPD------RIVPTVGLNIGRIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAV 83 (192)
Q Consensus 14 kst~~~~l~~~~~~~--~~~~~~--~~~~------~~~~T~g~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~i 83 (192)
|||++++|+...-.. ...+.+ ...+ .+.+|++.....+...+..+.+|||||+.+|...+..+++.+|++
T Consensus 25 KTTL~~~Ll~~~g~~~~~g~v~~~~~~~d~~~~E~~~giTi~~~~~~~~~~~~~i~liDTPG~~df~~~~~~~l~~aD~~ 104 (691)
T 1dar_A 25 KTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAAVTTCFWKDHRINIIDTPGHVDFTIEVERSMRVLDGA 104 (691)
T ss_dssp HHHHHHHHHHHHCC----------------------------CCEEEEEETTEEEEEECCCSSTTCHHHHHHHHHHCSEE
T ss_pred HHHHHHHHHHhcCCCcccceecCCceeccCchhhhhcccccccceEEEEECCeEEEEEECcCccchHHHHHHHHHHCCEE
Confidence 899999988543211 001111 0111 446788877778888899999999999999999999999999999
Q ss_pred EEEEeCCCcccHHHHHHHHHHHHhCCCCCCCcEEEEEeCCCCCCC
Q 029517 84 VFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDA 128 (192)
Q Consensus 84 i~v~D~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~~ 128 (192)
|+|+|+++..+.+....|.. +.. .++|+++++||+|+...
T Consensus 105 ilVvDa~~g~~~~t~~~~~~-~~~----~~~p~ivviNKiD~~~~ 144 (691)
T 1dar_A 105 IVVFDSSQGVEPQSETVWRQ-AEK----YKVPRIAFANKMDKTGA 144 (691)
T ss_dssp EEEEETTTCSCHHHHHHHHH-HHH----TTCCEEEEEECTTSTTC
T ss_pred EEEEECCCCcchhhHHHHHH-HHH----cCCCEEEEEECCCcccC
Confidence 99999998887776655543 332 36899999999999764
No 174
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=99.54 E-value=1.4e-13 Score=117.85 Aligned_cols=108 Identities=19% Similarity=0.191 Sum_probs=74.6
Q ss_pred ccccHHHHHHHHhhh--hccC-CCCCCCCC-------CCCcceEEEEEEecCEEEEEEeCCCCcccHHHHHHhhhcCCEE
Q 029517 14 TKTEFHTLLEKLKSV--YSNV-EGLPPDRI-------VPTVGLNIGRIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAV 83 (192)
Q Consensus 14 kst~~~~l~~~~~~~--~~~~-~~~~~~~~-------~~T~g~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~i 83 (192)
|||++++|++..... ...+ .+.+...+ ..|+......+....+.+++|||||+.+|...+..+++.+|++
T Consensus 22 KTTLl~~L~~~~~~~~~~G~V~~g~~~~d~~~~e~~~giti~~~~~~~~~~~~~~nliDTpG~~~f~~~~~~~l~~ad~~ 101 (665)
T 2dy1_A 22 KTTLTEALLYKTGAKERRGRVEEGTTTTDYTPEAKLHRTTVRTGVAPLLFRGHRVFLLDAPGYGDFVGEIRGALEAADAA 101 (665)
T ss_dssp HHHHHHHHHHHTTSSSSCCCGGGTCCSSCCSHHHHHTTSCCSCEEEEEEETTEEEEEEECCCSGGGHHHHHHHHHHCSEE
T ss_pred HHHHHHHHHHhcCCCCccceecCCcccccCCHHHHhcCCeEEecceEEeeCCEEEEEEeCCCccchHHHHHHHHhhcCcE
Confidence 889999888654321 0011 11111111 2344444455677789999999999999999999999999999
Q ss_pred EEEEeCCCcccHHHHHHHHHHHHhCCCCCCCcEEEEEeCCCCC
Q 029517 84 VFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLP 126 (192)
Q Consensus 84 i~v~D~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~ 126 (192)
++|+|+++....... .++..+.. .++|+++++||+|+.
T Consensus 102 ilVvD~~~g~~~qt~-~~~~~~~~----~~ip~ilv~NKiD~~ 139 (665)
T 2dy1_A 102 LVAVSAEAGVQVGTE-RAWTVAER----LGLPRMVVVTKLDKG 139 (665)
T ss_dssp EEEEETTTCSCHHHH-HHHHHHHH----TTCCEEEEEECGGGC
T ss_pred EEEEcCCcccchhHH-HHHHHHHH----ccCCEEEEecCCchh
Confidence 999999876554432 44444433 368999999999987
No 175
>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}
Probab=99.53 E-value=1.8e-15 Score=128.15 Aligned_cols=122 Identities=18% Similarity=0.154 Sum_probs=81.6
Q ss_pred CCCcceEEEEEEecCEEEEEEeCCCCcccHHHHHHhhhcCCEEEEEEeCCCcc---cH---HHHHHHHHHHHhCCCCCCC
Q 029517 41 VPTVGLNIGRIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPS---RF---EDSKTALEKVLRNEDLQGA 114 (192)
Q Consensus 41 ~~T~g~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ii~v~D~~~~~---s~---~~~~~~~~~i~~~~~~~~~ 114 (192)
..|+...+..+...+.++.||||||+++|...+..+++.+|++|+|+|+++.. ++ ....+.+..+... ...
T Consensus 230 GiTid~~~~~~~~~~~~~~iiDTPG~e~f~~~~~~~~~~aD~~llVVDa~~g~~e~~~~~~~qt~e~l~~~~~l---gi~ 306 (611)
T 3izq_1 230 GVTVSICTSHFSTHRANFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASSL---GIH 306 (611)
T ss_dssp TTCCSCSCCEEECSSCEEEEEECCSSSCHHHHHTTTSSCCSEEEEEEECSHHHHHTTCCTTSHHHHHHHHHHTT---TCC
T ss_pred CeeEeeeeEEEecCCceEEEEECCCCcccHHHHHHHHhhcCceEEEEECCCCcccccchhhhHHHHHHHHHHHc---CCC
Confidence 34555566677778899999999999999999988999999999999998631 00 1111222222222 235
Q ss_pred cEEEEEeCCCCCCC--CC----HHHHHhHcCccccCCcceEEEEeeecCCCCHHHHH
Q 029517 115 PLLILANKQDLPDA--VS----ADELARYLDLKKLDERVCMFEAVSGYDGFGIKESV 165 (192)
Q Consensus 115 piiiv~nK~Dl~~~--~~----~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~e~~ 165 (192)
|+++|+||+|+.+. .. .+++..++..........+++++||++|.||.++.
T Consensus 307 ~iIVVvNKiDl~~~~~~~~~ei~~~l~~~l~~~g~~~~~~~~i~vSA~tG~gI~el~ 363 (611)
T 3izq_1 307 NLIIAMNKMDNVDWSQQRFEEIKSKLLPYLVDIGFFEDNINWVPISGFSGEGVYKIE 363 (611)
T ss_dssp EEEEEEECTTTTTTCHHHHHHHHHHHHHHHHHHTCCGGGCEEEECCTTTCTTTSSCT
T ss_pred eEEEEEecccccchhHHHHHHHHHHHHHHHHhhcccccCccEEeeecccCCCccccC
Confidence 69999999999752 11 12222322211111235799999999999999773
No 176
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=99.52 E-value=3.8e-14 Score=106.87 Aligned_cols=149 Identities=12% Similarity=0.040 Sum_probs=85.3
Q ss_pred ccccHHHHHHHHhhhhccCCCCCCCCCCCCcceEEEEEEecCEEEEEEeCCCCc-----------ccHHHHHHhhhcCCE
Q 029517 14 TKTEFHTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQP-----------GLRSIWEKYYEEAHA 82 (192)
Q Consensus 14 kst~~~~l~~~~~~~~~~~~~~~~~~~~~T~g~~~~~~~~~~~~~~i~D~~G~~-----------~~~~~~~~~~~~~d~ 82 (192)
|||++|+|++.... .........|.......+...+..+.+|||||.. .+...+..+++++|+
T Consensus 42 KStlin~l~g~~~~------~~~~~~~~~t~~~~~~~~~~~~~~i~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 115 (239)
T 3lxx_A 42 KSATGNSILGRKVF------HSGTAAKSITKKCEKRSSSWKETELVVVDTPGIFDTEVPNAETSKEIIRCILLTSPGPHA 115 (239)
T ss_dssp HHHHHHHHHTSCCS------CC-------CCSCEEEEEEETTEEEEEEECCSCC-----CHHHHHHHHHHHHHTTTCCSE
T ss_pred HHHHHHHHcCCCcC------ccCCCCCceeeeEEEEEEEeCCceEEEEECCCccCCCCCHHHHHHHHHHHHHhcCCCCcE
Confidence 67777777653221 0000011234444455666778899999999943 344445556677899
Q ss_pred EEEEEeCCCcccHHHHHHHHHHHHhCCC-CCCCcEEEEEeCCCCCCCCCHH--------HHHhHcCccccCCcceEEEEe
Q 029517 83 VVFVIDAACPSRFEDSKTALEKVLRNED-LQGAPLLILANKQDLPDAVSAD--------ELARYLDLKKLDERVCMFEAV 153 (192)
Q Consensus 83 ii~v~D~~~~~s~~~~~~~~~~i~~~~~-~~~~piiiv~nK~Dl~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~ 153 (192)
+|+|+|+++...-+ ..++..+..... ....|+++|+||+|+......+ .+.+.++ ..+..++.+
T Consensus 116 ~l~v~d~~~~~~~~--~~~l~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~i~~~~~~l~~l~~-----~~~~~~~~~ 188 (239)
T 3lxx_A 116 LLLVVPLGRYTEEE--HKATEKILKMFGERARSFMILIFTRKDDLGDTNLHDYLREAPEDIQDLMD-----IFGDRYCAL 188 (239)
T ss_dssp EEEEEETTCCSSHH--HHHHHHHHHHHHHHHGGGEEEEEECGGGC------------CHHHHHHHH-----HHSSSEEEC
T ss_pred EEEEeeCCCCCHHH--HHHHHHHHHHhhhhccceEEEEEeCCccCCcccHHHHHHhchHHHHHHHH-----HcCCEEEEE
Confidence 99999987654422 233333332100 0246999999999986532222 2333332 233456666
Q ss_pred eecC-----CCCHHHHHHHHHHHHHhc
Q 029517 154 SGYD-----GFGIKESVEWLVEVMERS 175 (192)
Q Consensus 154 Sa~~-----~~gi~e~~~~i~~~i~~~ 175 (192)
++.. +.|+.++++.+.+.+.+.
T Consensus 189 ~~~~~~~~~~~~v~~ll~~i~~~~~~~ 215 (239)
T 3lxx_A 189 NNKATGAEQEAQRAQLLGLIQRVVREN 215 (239)
T ss_dssp CTTCCHHHHHHHHHHHHHHHHHHHHHC
T ss_pred ECCCCccccHHHHHHHHHHHHHHHHHc
Confidence 5553 368999999988877653
No 177
>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}
Probab=99.52 E-value=1.1e-15 Score=129.14 Aligned_cols=145 Identities=15% Similarity=0.147 Sum_probs=70.5
Q ss_pred ccccHHHHHHHHhhhhcc---------------------CCCCCCCC--CCCCcceEEEEEEecCEEEEEEeCCCCcccH
Q 029517 14 TKTEFHTLLEKLKSVYSN---------------------VEGLPPDR--IVPTVGLNIGRIEVSNSKLVFWDLGGQPGLR 70 (192)
Q Consensus 14 kst~~~~l~~~~~~~~~~---------------------~~~~~~~~--~~~T~g~~~~~~~~~~~~~~i~D~~G~~~~~ 70 (192)
|||++|+|++....+..+ +.+....+ ...|+...+..+...+..+.||||||+++|.
T Consensus 190 KSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~GiTid~~~~~~~~~~~~i~iiDTPGh~~f~ 269 (592)
T 3mca_A 190 KSTMLGRIMFELGEINSRSMQKLHNEAANSGKGSFSYAWLLDTTEEERARGVTMDVASTTFESDKKIYEIGDAPGHRDFI 269 (592)
T ss_dssp HHHHHHHHHHHHHCC------------------------------------------------------CCEEESSSEEE
T ss_pred HHHHHHHHHHHcCCcchHHHHHHHHhHhhcCCcchhhhhhhccchhhhcCCeeEEeeEEEEEeCCeEEEEEECCChHHHH
Confidence 899999998765443322 11111111 1335555555566667899999999999988
Q ss_pred HHHHHhhhcCCEEEEEEeCCCcc---cH---HHHHHHHHHHHhCCCCCCCc-EEEEEeCCCCCCCC------CHHHHHhH
Q 029517 71 SIWEKYYEEAHAVVFVIDAACPS---RF---EDSKTALEKVLRNEDLQGAP-LLILANKQDLPDAV------SADELARY 137 (192)
Q Consensus 71 ~~~~~~~~~~d~ii~v~D~~~~~---s~---~~~~~~~~~i~~~~~~~~~p-iiiv~nK~Dl~~~~------~~~~~~~~ 137 (192)
.....+++.+|++|+|+|+++.. .+ ....+.+..+.. .++| +++|+||+|+.+.. ..+++.++
T Consensus 270 ~~~~~~~~~aD~alLVVDa~~g~~e~gi~~~~qt~e~l~~~~~----lgip~iIvviNKiDl~~~~~~~~~~i~~el~~~ 345 (592)
T 3mca_A 270 SGMIAGASSADFAVLVVDSSQNNFERGFLENGQTREHAYLLRA----LGISEIVVSVNKLDLMSWSEDRFQEIKNIVSDF 345 (592)
T ss_dssp EECCC-------CCSEEEEEECCSSTTSCSCSSHHHHHHHHHH----SSCCCEEEEEECGGGGTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhCCEEEEEEECCCCccccccccchHHHHHHHHHHH----cCCCeEEEEEeccccccccHHHHHHHHHHHHHH
Confidence 77777788999999999998532 01 111122222222 2455 99999999987521 12334444
Q ss_pred c-CccccCCcceEEEEeeecCCCCHH
Q 029517 138 L-DLKKLDERVCMFEAVSGYDGFGIK 162 (192)
Q Consensus 138 ~-~~~~~~~~~~~~~~~Sa~~~~gi~ 162 (192)
+ ....+....++++++||++|.||.
T Consensus 346 l~~~~g~~~~~~~ii~iSA~~G~gI~ 371 (592)
T 3mca_A 346 LIKMVGFKTSNVHFVPISAISGTNLI 371 (592)
T ss_dssp HTTTSCCCGGGEEEEEECSSSCSSSC
T ss_pred HHHhhCCCccceEEEEEecccCcccc
Confidence 4 322222335789999999999998
No 178
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=99.52 E-value=2.5e-14 Score=108.57 Aligned_cols=149 Identities=11% Similarity=0.070 Sum_probs=88.3
Q ss_pred ccccHHHHHHHHhhhhccCCCCCCCCCCCCcceEEEEEEecCEEEEEEeCCCC--------cccHHHHHHhh----hcCC
Q 029517 14 TKTEFHTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQ--------PGLRSIWEKYY----EEAH 81 (192)
Q Consensus 14 kst~~~~l~~~~~~~~~~~~~~~~~~~~~T~g~~~~~~~~~~~~~~i~D~~G~--------~~~~~~~~~~~----~~~d 81 (192)
|||++|+|+++..... .......|...........+..+.||||||. +.+......++ +++|
T Consensus 34 KSSlin~l~~~~~~~~------~~~~~~~T~~~~~~~~~~~~~~i~liDTPG~~~~~~~~~~~~~~~i~~~~~~~~~~~d 107 (247)
T 3lxw_A 34 KSATGNSILGQRRFFS------RLGATSVTRACTTGSRRWDKCHVEVVDTPDIFSSQVSKTDPGCEERGHCYLLSAPGPH 107 (247)
T ss_dssp HHHHHHHHHTSCCC---------------CCSCEEEEEEETTEEEEEEECCSCSSTTHHHHSTTSHHHHHHHHHHTTCCS
T ss_pred HHHHHHHHhCCCCccc------cCCCCCccccEEEEEEEECCcEEEEEECCCCCCCCCCcHHHHHHHHHHHHHhcCCCCC
Confidence 7888888876432210 0011124555555667777899999999996 33333333343 8999
Q ss_pred EEEEEEeCCCcccH-HHHHHHHHHHHhCCCCCCCcEEEEEeCCCCCCCCCHHH---------HHhHcCccccCCcceEEE
Q 029517 82 AVVFVIDAACPSRF-EDSKTALEKVLRNEDLQGAPLLILANKQDLPDAVSADE---------LARYLDLKKLDERVCMFE 151 (192)
Q Consensus 82 ~ii~v~D~~~~~s~-~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~~~~~~~---------~~~~~~~~~~~~~~~~~~ 151 (192)
++|+|+|+++.... ..+.+++..+... ...+.|+++++||.|+.+. +.++ +...++ ..+..++
T Consensus 108 ~il~V~d~~~~~~~~~~~~~~l~~~~~~-~~~~~~iilv~nK~Dl~~~-~~~~~l~~~~~~~l~~l~~-----~~g~~~~ 180 (247)
T 3lxw_A 108 ALLLVTQLGRFTAQDQQAVRQVRDMFGE-DVLKWMVIVFTRKEDLAGG-SLHDYVSNTENRALRELVA-----ECGGRVC 180 (247)
T ss_dssp EEEEEEETTBCCHHHHHHHHHHHHHHCG-GGGGGEEEEEECGGGGTTC-CHHHHHHHCCCHHHHHHHH-----HTTTCEE
T ss_pred EEEEEEeCCCCCHHHHHHHHHHHHHhCh-hhhccEEEEEEchHhcCCC-CHHHHHhhcccHHHHHHHH-----HcCCeEE
Confidence 99999999753222 2223344433221 1136899999999999753 2222 222222 2334455
Q ss_pred EeeecC-----CCCHHHHHHHHHHHHHhc
Q 029517 152 AVSGYD-----GFGIKESVEWLVEVMERS 175 (192)
Q Consensus 152 ~~Sa~~-----~~gi~e~~~~i~~~i~~~ 175 (192)
.+++.. +.||.++++.|.+.+.+.
T Consensus 181 ~~~~~~~~~~~~~~v~~Ll~~i~~~~~~~ 209 (247)
T 3lxw_A 181 AFDNRATGREQEAQVEQLLGMVEGLVLEH 209 (247)
T ss_dssp ECCTTCCHHHHHHHHHHHHHHHHHHHHHT
T ss_pred EEeCCCCccccHHHHHHHHHHHHHHHHHc
Confidence 554433 689999999998888753
No 179
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.50 E-value=4.3e-15 Score=118.68 Aligned_cols=124 Identities=11% Similarity=0.159 Sum_probs=64.1
Q ss_pred CCCcceEEEEEE--ec--CEEEEEEeCCCC-------cccHHHHH-------HhhhcCC-------------EEEEEEeC
Q 029517 41 VPTVGLNIGRIE--VS--NSKLVFWDLGGQ-------PGLRSIWE-------KYYEEAH-------------AVVFVIDA 89 (192)
Q Consensus 41 ~~T~g~~~~~~~--~~--~~~~~i~D~~G~-------~~~~~~~~-------~~~~~~d-------------~ii~v~D~ 89 (192)
.+|++.....+. .. .+.+.+|||||+ +.+...+. .|++.++ +++++++.
T Consensus 76 ~~ti~~~~~~~~~~~~~~~~~l~i~DTpG~gd~~~~~e~~~~i~~~i~~~~~~yl~~~~~~~r~~~~d~rv~~~vy~I~~ 155 (361)
T 2qag_A 76 ERTVQIEASTVEIEERGVKLRLTVVDTPGYGDAINCRDCFKTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISP 155 (361)
T ss_dssp --CEEEEEEEEC----CEEEEEEEEC--------------CCTHHHHHHHHHHHHHHHTCSCCC-CCCCCCCEEEEEECS
T ss_pred CCceeEEEEEEEeecCCcccceEEEEeccccccCccHHHHHHHHHHHHHHHHHHHHHhhhhccccccCCceEEEEEEEec
Confidence 467776654432 22 358999999998 55555554 6666544 45555554
Q ss_pred CCcccHHHHH-HHHHHHHhCCCCCCCcEEEEEeCCCCCCCCCH----HHHHhHcCccccCCcceEEEEeeecCCCCHHHH
Q 029517 90 ACPSRFEDSK-TALEKVLRNEDLQGAPLLILANKQDLPDAVSA----DELARYLDLKKLDERVCMFEAVSGYDGFGIKES 164 (192)
Q Consensus 90 ~~~~s~~~~~-~~~~~i~~~~~~~~~piiiv~nK~Dl~~~~~~----~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~e~ 164 (192)
+ ..++..+. .++..+ . .++|+++|+||+|+...... +++.+.+. ..+++++++||++|.| ++.
T Consensus 156 ~-~~~l~~~d~~~~~~l---~--~~~piIlV~NK~Dl~~~~ev~~~k~~i~~~~~-----~~~i~~~~~Sa~~~~~-~e~ 223 (361)
T 2qag_A 156 F-GHGLKPLDVAFMKAI---H--NKVNIVPVIAKADTLTLKERERLKKRILDEIE-----EHNIKIYHLPDAESDE-DED 223 (361)
T ss_dssp S-SSSCCHHHHHHHHHT---C--S-SCEEEEEECCSSSCHHHHHHHHHHHHHHTT-----CC-CCSCCCC----------
T ss_pred C-CCCcchhHHHHHHHh---c--cCCCEEEEEECCCCCCHHHHHHHHHHHHHHHH-----HCCCCEEeCCCcCCCc-chh
Confidence 2 34455444 333333 1 46899999999998752111 34445554 5678999999999999 999
Q ss_pred HHHHHHHHHhcc
Q 029517 165 VEWLVEVMERSK 176 (192)
Q Consensus 165 ~~~i~~~i~~~~ 176 (192)
|.++.+.+.+..
T Consensus 224 ~~~l~~~i~~~i 235 (361)
T 2qag_A 224 FKEQTRLLKASI 235 (361)
T ss_dssp CHHHHHHHHHTC
T ss_pred HHHHHHHHHhcC
Confidence 999988886543
No 180
>2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W*
Probab=99.49 E-value=3.4e-14 Score=118.52 Aligned_cols=115 Identities=17% Similarity=0.135 Sum_probs=77.7
Q ss_pred CcceEEEEEEecCEEEEEEeCCCCcccHHHHHHhhhcCCEEEEEEeCCCcccHHHHHHHHHHHHhCCCCCCCcEEEEEeC
Q 029517 43 TVGLNIGRIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANK 122 (192)
Q Consensus 43 T~g~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ii~v~D~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK 122 (192)
|+......+...+..+.+|||||+.+|...+..+++.+|++|+|+|+++...... ..++..+ .. .++|+++++||
T Consensus 69 Ti~~~~~~~~~~~~~i~liDTPG~~df~~~~~~~l~~aD~~IlVvDa~~g~~~~t-~~~~~~~-~~---~~ipiivviNK 143 (529)
T 2h5e_A 69 SITTSVMQFPYHDCLVNLLDTPGHEDFSEDTYRTLTAVDCCLMVIDAAKGVEDRT-RKLMEVT-RL---RDTPILTFMNK 143 (529)
T ss_dssp -CCTTEEEEEETTEEEEEECCCCSTTCCHHHHHGGGGCSEEEEEEETTTCSCHHH-HHHHHHH-TT---TTCCEEEEEEC
T ss_pred ceeeeEEEEEECCeEEEEEECCCChhHHHHHHHHHHHCCEEEEEEeCCccchHHH-HHHHHHH-HH---cCCCEEEEEcC
Confidence 4444445677788999999999999999888899999999999999987643322 2222222 22 47899999999
Q ss_pred CCCCCCCC---HHHHHhHcCccccCCcceEEEEeeecCCCCHHHHH
Q 029517 123 QDLPDAVS---ADELARYLDLKKLDERVCMFEAVSGYDGFGIKESV 165 (192)
Q Consensus 123 ~Dl~~~~~---~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~e~~ 165 (192)
+|+..... .+++.+.+... .....+..+|++++.|+.+++
T Consensus 144 ~Dl~~~~~~~~~~~i~~~l~~~---~~~~~~pi~sa~~~~Gv~dl~ 186 (529)
T 2h5e_A 144 LDRDIRDPMELLDEVENELKIG---CAPITWPIGCGKLFKGVYHLY 186 (529)
T ss_dssp TTSCCSCHHHHHHHHHHHHCCE---EEESEEEESCGGGCCEEEETT
T ss_pred cCCccccHHHHHHHHHHHhCCC---ccceecceecccCcceeeehh
Confidence 99986543 23444444311 112334456777777765554
No 181
>2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H
Probab=99.49 E-value=4.9e-13 Score=115.06 Aligned_cols=109 Identities=15% Similarity=0.028 Sum_probs=75.1
Q ss_pred ccccHHHHHHHHhhhh--ccCCC--CCCC------CCCCCcceEEEEEEecC-------EEEEEEeCCCCcccHHHHHHh
Q 029517 14 TKTEFHTLLEKLKSVY--SNVEG--LPPD------RIVPTVGLNIGRIEVSN-------SKLVFWDLGGQPGLRSIWEKY 76 (192)
Q Consensus 14 kst~~~~l~~~~~~~~--~~~~~--~~~~------~~~~T~g~~~~~~~~~~-------~~~~i~D~~G~~~~~~~~~~~ 76 (192)
|||++++|+...-... .++.+ .+.+ ....|+......+.... +.+.||||||+.+|...+..+
T Consensus 23 KTTL~~~Ll~~~g~~~~~g~v~~g~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~i~liDTPG~~df~~~~~~~ 102 (704)
T 2rdo_7 23 KTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTAFWSGMAKQYEPHRINIIDTPGHVDFTIEVERS 102 (704)
T ss_pred HHHHHHHHHHhcCCcccccccCCCceeecChhhHHhcCceeeeceEEEEECCccccCCceeEEEEeCCCccchHHHHHHH
Confidence 8888888876421100 01111 1111 23456665555565554 899999999999999999999
Q ss_pred hhcCCEEEEEEeCCCcccHHHHHHHHHHHHhCCCCCCCcEEEEEeCCCCCC
Q 029517 77 YEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPD 127 (192)
Q Consensus 77 ~~~~d~ii~v~D~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~ 127 (192)
++.+|++|+|+|+++....+....| ..+.. .++|+++++||+|+..
T Consensus 103 l~~aD~aIlVvDa~~gv~~qt~~~~-~~~~~----~~ip~ilviNKiD~~~ 148 (704)
T 2rdo_7 103 MRVLDGAVMVYCAVGGVQPQSETVW-RQANK----YKVPRIAFVNKMDRMG 148 (704)
T ss_pred HHHCCEEEEEEeCCCCCcHHHHHHH-HHHHH----cCCCEEEEEeCCCccc
Confidence 9999999999999987655544333 22222 3689999999999865
No 182
>2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus}
Probab=99.48 E-value=4.8e-13 Score=114.96 Aligned_cols=111 Identities=15% Similarity=0.076 Sum_probs=76.6
Q ss_pred hccccHHHHHHHHhhhh--ccCCC--CCCC------CCCCCcceEEEEEEecCEEEEEEeCCCCcccHHHHHHhhhcCCE
Q 029517 13 FTKTEFHTLLEKLKSVY--SNVEG--LPPD------RIVPTVGLNIGRIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHA 82 (192)
Q Consensus 13 ~kst~~~~l~~~~~~~~--~~~~~--~~~~------~~~~T~g~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ 82 (192)
=|||++|+|++...... ..+.+ ...+ ....|++.....+...+..+.+|||||+.+|...+..+++.+|+
T Consensus 22 GKSTL~~~Ll~~~~~~~~~g~v~~~~~~~D~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~~df~~~~~~~l~~aD~ 101 (693)
T 2xex_A 22 GKTTTTERILYYTGRIHKIGETHEGASQMDWMEQEQDRGITITSAATTAAWEGHRVNIIDTPGHVDFTVEVERSLRVLDG 101 (693)
T ss_dssp THHHHHHHHHHHHSSCC-------------------------CCSEEEEEETTEEEEEECCCCCSSCCHHHHHHHHHCSE
T ss_pred CHHHHHHHHHHhcCCccccccccCCceecccchhhhhcCceEeeeeEEEEECCeeEEEEECcCCcchHHHHHHHHHHCCE
Confidence 38999999986532210 00101 1111 23556766667777888999999999999999999999999999
Q ss_pred EEEEEeCCCcccHHHHHHHHHHHHhCCCCCCCcEEEEEeCCCCCCC
Q 029517 83 VVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDA 128 (192)
Q Consensus 83 ii~v~D~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~~ 128 (192)
+|+|+|+++..+......|. .+.. .+.|+++|+||+|+...
T Consensus 102 ~llVvDa~~g~~~~~~~~~~-~~~~----~~~p~ilviNK~Dl~~~ 142 (693)
T 2xex_A 102 AVTVLDAQSGVEPQTETVWR-QATT----YGVPRIVFVNKMDKLGA 142 (693)
T ss_dssp EEEEEETTTBSCHHHHHHHH-HHHH----TTCCEEEEEECTTSTTC
T ss_pred EEEEECCCCCCcHHHHHHHH-HHHH----cCCCEEEEEECCCcccc
Confidence 99999999887776655543 3333 36899999999999764
No 183
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=99.47 E-value=2.4e-13 Score=110.10 Aligned_cols=150 Identities=21% Similarity=0.275 Sum_probs=102.4
Q ss_pred ccccHHHHHHHHhhhhccCCCCCCCCCCCCcceEEEEEEecC-EEEEEEeCCCCcc-------cHHHHHHhhhcCCEEEE
Q 029517 14 TKTEFHTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSN-SKLVFWDLGGQPG-------LRSIWEKYYEEAHAVVF 85 (192)
Q Consensus 14 kst~~~~l~~~~~~~~~~~~~~~~~~~~~T~g~~~~~~~~~~-~~~~i~D~~G~~~-------~~~~~~~~~~~~d~ii~ 85 (192)
|||++|+|. +..+.+.+++.++..|++|. +.... ..+.+||+||... +.......++.++.+++
T Consensus 170 KSTLL~~Ls----g~~~~i~~~~ftTl~p~~G~----V~~~~~~~~~l~DtpGli~~a~~~~~L~~~fl~~~era~~lL~ 241 (416)
T 1udx_A 170 KSSLLAAMT----RAHPKIAPYPFTTLSPNLGV----VEVSEEERFTLADIPGIIEGASEGKGLGLEFLRHIARTRVLLY 241 (416)
T ss_dssp HHHHHHHHC----SSCCEECCCTTCSSCCEEEE----EECSSSCEEEEEECCCCCCCGGGSCCSCHHHHHHHTSSSEEEE
T ss_pred HHHHHHHHH----cCCccccCcccceecceeeE----EEecCcceEEEEeccccccchhhhhhhhHHHHHHHHHHHhhhE
Confidence 566666554 44445556665555565443 44443 7899999999732 11222334678999999
Q ss_pred EEeCCCcccHHHHHHHHHHHHhCCC-CCCCcEEEEEeCCCCCCCCCHHHHHhHcCccccCCcceEEEEeeecCCCCHHHH
Q 029517 86 VIDAACPSRFEDSKTALEKVLRNED-LQGAPLLILANKQDLPDAVSADELARYLDLKKLDERVCMFEAVSGYDGFGIKES 164 (192)
Q Consensus 86 v~D~~~~~s~~~~~~~~~~i~~~~~-~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~e~ 164 (192)
|+|++ ...+..+..+..++..... ....|.++++||+|+......+++.+.+. ..+..++++||+++.|++++
T Consensus 242 vvDls-~~~~~~ls~g~~el~~la~aL~~~P~ILVlNKlDl~~~~~~~~l~~~l~-----~~g~~vi~iSA~~g~gi~eL 315 (416)
T 1udx_A 242 VLDAA-DEPLKTLETLRKEVGAYDPALLRRPSLVALNKVDLLEEEAVKALADALA-----REGLAVLPVSALTGAGLPAL 315 (416)
T ss_dssp EEETT-SCHHHHHHHHHHHHHHHCHHHHHSCEEEEEECCTTSCHHHHHHHHHHHH-----TTTSCEEECCTTTCTTHHHH
T ss_pred EeCCc-cCCHHHHHHHHHHHHHHhHHhhcCCEEEEEECCChhhHHHHHHHHHHHH-----hcCCeEEEEECCCccCHHHH
Confidence 99998 6667777777766665421 13689999999999875422233333333 34678999999999999999
Q ss_pred HHHHHHHHHhcch
Q 029517 165 VEWLVEVMERSKR 177 (192)
Q Consensus 165 ~~~i~~~i~~~~~ 177 (192)
+++|.+.+.....
T Consensus 316 ~~~i~~~l~~~~~ 328 (416)
T 1udx_A 316 KEALHALVRSTPP 328 (416)
T ss_dssp HHHHHHHHHTSCC
T ss_pred HHHHHHHHHhccc
Confidence 9999999876653
No 184
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Probab=99.41 E-value=9.5e-13 Score=113.16 Aligned_cols=117 Identities=19% Similarity=0.240 Sum_probs=80.7
Q ss_pred EEEEEEeCCCCcc---cHHHHHHhhhcCCEEEEEEeCCCcccHHHHHHHHHHHHhCCCCCCCcEEEEEeCCCCCCCC--C
Q 029517 56 SKLVFWDLGGQPG---LRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAV--S 130 (192)
Q Consensus 56 ~~~~i~D~~G~~~---~~~~~~~~~~~~d~ii~v~D~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~~~--~ 130 (192)
..+.+|||||... .......+++.+|++|+|+|++++.+......|...+.. .+.|+++|+||+|+.... +
T Consensus 174 ~~l~LiDTPGl~~~~~~~~~~~~~i~~aD~vL~Vvda~~~~s~~e~~~l~~~l~~----~~~~iiiVlNK~Dl~~~~~~~ 249 (695)
T 2j69_A 174 KGIEIVDSPGLNDTEARNELSLGYVNNCHAILFVMRASQPCTLGERRYLENYIKG----RGLTVFFLVNAWDQVRESLID 249 (695)
T ss_dssp TTEEEEECCCHHHHHTCHHHHTHHHHSSSEEEEEEETTSTTCHHHHHHHHHHTTT----SCCCEEEEEECGGGGGGGCSS
T ss_pred CCeEEEECCCCCchhhHHHHHHHHHHhCCEEEEEEeCCCccchhHHHHHHHHHHh----hCCCEEEEEECcccccccccC
Confidence 3689999999654 445667789999999999999988777776555443322 367899999999986421 1
Q ss_pred HH----------HHHhH----cC-ccc---cCCcceEEEEeeec--------------CCCCHHHHHHHHHHHHHhcc
Q 029517 131 AD----------ELARY----LD-LKK---LDERVCMFEAVSGY--------------DGFGIKESVEWLVEVMERSK 176 (192)
Q Consensus 131 ~~----------~~~~~----~~-~~~---~~~~~~~~~~~Sa~--------------~~~gi~e~~~~i~~~i~~~~ 176 (192)
.+ .+.+. +. ... ......+++++||+ +|.|+++++++|.+.+...+
T Consensus 250 ~ee~e~l~~~~~~i~~~~~~~l~~~~~~~g~~~~~~~v~~vSAk~al~~~~~~~~~~~~~~Gi~~L~~~L~~~l~~~~ 327 (695)
T 2j69_A 250 PDDVEELQASENRLRQVFNANLAEYCTVEGQNIYDERVFELSSIQALRRRLKNPQADLDGTGFPKFMDSLNTFLTRER 327 (695)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHHGGGGBSSSCBCGGGTEEECCHHHHHHHHHHCTTCCCTTSSHHHHHHHHHHHHHHTH
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHhhcccccccCCCcEEEEeChHHHHhhccCchhhhhccCHHHHHHHHHHHHHHhH
Confidence 11 12111 11 000 00123578999999 99999999999998776543
No 185
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=99.40 E-value=1.3e-13 Score=107.54 Aligned_cols=96 Identities=18% Similarity=0.088 Sum_probs=74.3
Q ss_pred CcccHHHHHHhhhcCCEEEEEEeCCCcc-cHHHHHHHHHHHHhCCCCCCCcEEEEEeCCCCCCCC--C-HHHHHhHcCcc
Q 029517 66 QPGLRSIWEKYYEEAHAVVFVIDAACPS-RFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAV--S-ADELARYLDLK 141 (192)
Q Consensus 66 ~~~~~~~~~~~~~~~d~ii~v~D~~~~~-s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~~~--~-~~~~~~~~~~~ 141 (192)
++++......+++++|++++|+|++++. ++..+..|+..+.. .++|+++|+||+|+.+.. + .+++.+.+.
T Consensus 66 ~er~~~l~r~~~~naD~vliV~d~~~p~~s~~~l~~~l~~~~~----~~~~~ilV~NK~DL~~~~~v~~~~~~~~~~~-- 139 (302)
T 2yv5_A 66 EERKNLLIRPKVANVDRVIIVETLKMPEFNNYLLDNMLVVYEY----FKVEPVIVFNKIDLLNEEEKKELERWISIYR-- 139 (302)
T ss_dssp CCCSCEEETTEEESCCEEEEEECSTTTTCCHHHHHHHHHHHHH----TTCEEEEEECCGGGCCHHHHHHHHHHHHHHH--
T ss_pred CChHHHHhHHHHHhcCEEEEEEECCCCCCCHHHHHHHHHHHHh----CCCCEEEEEEcccCCCccccHHHHHHHHHHH--
Confidence 6666666667899999999999999885 89988899886654 379999999999997521 1 233344433
Q ss_pred ccCCcceEEEEeeecCCCCHHHHHHHHHH
Q 029517 142 KLDERVCMFEAVSGYDGFGIKESVEWLVE 170 (192)
Q Consensus 142 ~~~~~~~~~~~~Sa~~~~gi~e~~~~i~~ 170 (192)
..+++++++||++|.|++++++.+..
T Consensus 140 ---~~g~~~~~~SA~~g~gi~~L~~~l~G 165 (302)
T 2yv5_A 140 ---DAGYDVLKVSAKTGEGIDELVDYLEG 165 (302)
T ss_dssp ---HTTCEEEECCTTTCTTHHHHHHHTTT
T ss_pred ---HCCCeEEEEECCCCCCHHHHHhhccC
Confidence 33679999999999999999987653
No 186
>3vqt_A RF-3, peptide chain release factor 3; translation, GTPase; HET: GDP; 1.80A {Desulfovibrio vulgaris} PDB: 3vr1_A*
Probab=99.38 E-value=3.7e-12 Score=106.69 Aligned_cols=83 Identities=16% Similarity=0.154 Sum_probs=66.4
Q ss_pred CCCcceEEEEEEecCEEEEEEeCCCCcccHHHHHHhhhcCCEEEEEEeCCCcccHHHHHHHHHHHHhCCCCCCCcEEEEE
Q 029517 41 VPTVGLNIGRIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILA 120 (192)
Q Consensus 41 ~~T~g~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ii~v~D~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~ 120 (192)
.-|+......+.+++..++|+|||||.+|.......++-+|++|+|+|+...-.-+....| +...+ .++|.++++
T Consensus 85 GITI~s~~~~~~~~~~~iNlIDTPGHvDF~~Ev~raL~~~DgAvlVvda~~GV~~qT~~v~-~~a~~----~~lp~i~fI 159 (548)
T 3vqt_A 85 GISVTTSVMQFPYRDRVVNLLDTPGHQDFSEDTYRVLTAVDSALVVIDAAKGVEAQTRKLM-DVCRM----RATPVMTFV 159 (548)
T ss_dssp ---CTTTEEEEEETTEEEEEECCCCGGGCSHHHHHHHHSCSEEEEEEETTTBSCHHHHHHH-HHHHH----TTCCEEEEE
T ss_pred CCcEeeceEEEEECCEEEEEEeCCCcHHHHHHHHHHHHhcCceEEEeecCCCcccccHHHH-HHHHH----hCCceEEEE
Confidence 3455555667888999999999999999999999999999999999999987666665555 33333 369999999
Q ss_pred eCCCCCCC
Q 029517 121 NKQDLPDA 128 (192)
Q Consensus 121 nK~Dl~~~ 128 (192)
||+|....
T Consensus 160 NK~Dr~~a 167 (548)
T 3vqt_A 160 NKMDREAL 167 (548)
T ss_dssp ECTTSCCC
T ss_pred ecccchhc
Confidence 99998763
No 187
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=99.38 E-value=2.1e-12 Score=100.97 Aligned_cols=115 Identities=19% Similarity=0.172 Sum_probs=72.0
Q ss_pred CEEEEEEeCCCCcc-------------cHHHHHHhhhcCCEEEEEEeCCCcccH-HHHHHHHHHHHhCCCCCCCcEEEEE
Q 029517 55 NSKLVFWDLGGQPG-------------LRSIWEKYYEEAHAVVFVIDAACPSRF-EDSKTALEKVLRNEDLQGAPLLILA 120 (192)
Q Consensus 55 ~~~~~i~D~~G~~~-------------~~~~~~~~~~~~d~ii~v~D~~~~~s~-~~~~~~~~~i~~~~~~~~~piiiv~ 120 (192)
...+.+|||||... +......+++.+|++++|+|+++.... .....+...+ .. .+.|+++|+
T Consensus 130 ~~~~~lvDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iilvvd~~~~~~~~~~~~~i~~~~-~~---~~~~~i~v~ 205 (315)
T 1jwy_B 130 VVNLTLVDLPGITKVPVGDQPTDIEQQIRRMVMAYIKKQNAIIVAVTPANTDLANSDALQLAKEV-DP---EGKRTIGVI 205 (315)
T ss_dssp SCSEEEEECCCCC---------CSHHHHHHHHHHHHHSTTEEEEEEEESSSCSTTCSHHHHHHHH-CS---SCSSEEEEE
T ss_pred CCCcEEEECCCCccCCCCCCchhHHHHHHHHHHHHHcCCCeEEEEEEecCcchhhhHHHHHHHHh-CC---CCCcEEEEE
Confidence 46799999999753 455677889999999999997433211 1111222222 22 468999999
Q ss_pred eCCCCCCCCC--HHHHHhHcCccccCCcceEEEEeeecC---CCCHHHHHHHHHHHHHhc
Q 029517 121 NKQDLPDAVS--ADELARYLDLKKLDERVCMFEAVSGYD---GFGIKESVEWLVEVMERS 175 (192)
Q Consensus 121 nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~---~~gi~e~~~~i~~~i~~~ 175 (192)
||+|+..... .+.+...+. ......+++..+||.+ +.|+.++++++.+.+...
T Consensus 206 NK~Dl~~~~~~~~~~~~~~~~--~~~~~~~~v~~~sa~~~~~~~gv~~l~~~~~~~~~~~ 263 (315)
T 1jwy_B 206 TKLDLMDKGTDAMEVLTGRVI--PLTLGFIGVINRSQEDIIAKKSIRESLKSEILYFKNH 263 (315)
T ss_dssp ECTTSSCSSCCCHHHHTTSSS--CCTTCEEECCCCCHHHHSSSCCHHHHHHHHHHHHHTC
T ss_pred cCcccCCcchHHHHHHhCCCc--cCCCCeEEEecCChhhhccCCCHHHHHHHHHHHHhCC
Confidence 9999975322 222221111 0001223455556666 899999999998877654
No 188
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=99.35 E-value=1.4e-12 Score=95.85 Aligned_cols=110 Identities=15% Similarity=0.107 Sum_probs=72.7
Q ss_pred EEEEEeCCCCcc----------cHHHHHHhh---hcCCEEEEEEeCCCcccHHHHHHHHHHHHhCCCCCCCcEEEEEeCC
Q 029517 57 KLVFWDLGGQPG----------LRSIWEKYY---EEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQ 123 (192)
Q Consensus 57 ~~~i~D~~G~~~----------~~~~~~~~~---~~~d~ii~v~D~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~ 123 (192)
.+.+|||||... +......++ +.++++++|+|++...+... ..+..+... .+.|+++++||+
T Consensus 73 ~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~--~~~~~~~~~---~~~~~~~v~nK~ 147 (210)
T 1pui_A 73 GKRLVDLPGYGYAEVPEEMKRKWQRALGEYLEKRQSLQGLVVLMDIRHPLKDLD--QQMIEWAVD---SNIAVLVLLTKA 147 (210)
T ss_dssp TEEEEECCCCC------CCHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCCHHH--HHHHHHHHH---TTCCEEEEEECG
T ss_pred CEEEEECcCCcccccCHHHHHHHHHHHHHHHHhhhcccEEEEEEECCCCCchhH--HHHHHHHHH---cCCCeEEEEecc
Confidence 578999999742 333444455 46899999999988765532 111122222 468999999999
Q ss_pred CCCCCC----CHHHHHhHcCccccCCcceEEEEeeecCCCCHHHHHHHHHHHHHh
Q 029517 124 DLPDAV----SADELARYLDLKKLDERVCMFEAVSGYDGFGIKESVEWLVEVMER 174 (192)
Q Consensus 124 Dl~~~~----~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~e~~~~i~~~i~~ 174 (192)
|+.... ..+.+...+.. ......++++||+++.|+++++++|.+.+.+
T Consensus 148 D~~s~~~~~~~~~~~~~~~~~---~~~~~~~~~~Sal~~~~~~~l~~~l~~~~~~ 199 (210)
T 1pui_A 148 DKLASGARKAQLNMVREAVLA---FNGDVQVETFSSLKKQGVDKLRQKLDTWFSE 199 (210)
T ss_dssp GGSCHHHHHHHHHHHHHHHGG---GCSCEEEEECBTTTTBSHHHHHHHHHHHHC-
T ss_pred cCCCchhHHHHHHHHHHHHHh---cCCCCceEEEeecCCCCHHHHHHHHHHHHhh
Confidence 986421 12334444431 0124688999999999999999999886644
No 189
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=99.29 E-value=7.8e-12 Score=95.51 Aligned_cols=104 Identities=7% Similarity=0.034 Sum_probs=63.9
Q ss_pred ccccHHHHHHHHhhhhccCCCCCCCCC-CCCcceEEEEEEecCEEEEEEeCCCCcccHHHHHHhhh---------cCCEE
Q 029517 14 TKTEFHTLLEKLKSVYSNVEGLPPDRI-VPTVGLNIGRIEVSNSKLVFWDLGGQPGLRSIWEKYYE---------EAHAV 83 (192)
Q Consensus 14 kst~~~~l~~~~~~~~~~~~~~~~~~~-~~T~g~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~---------~~d~i 83 (192)
|||++|+|+++-.. +...+ ..|.......+...+..+.+|||||++++......+++ ++|++
T Consensus 49 KSSLin~l~~~~~~--------~~~~~~~~t~~~~~~~~~~~~~~l~liDTpG~~~~~~~~~~~~~~i~~~l~~~~~~~i 120 (262)
T 3def_A 49 KSSTVNSLIGEQVV--------RVSPFQAEGLRPVMVSRTMGGFTINIIDTPGLVEAGYVNHQALELIKGFLVNRTIDVL 120 (262)
T ss_dssp HHHHHHHHHTSCCS--------CCCSSCC-CCCCEEEEEEETTEEEEEEECCCSEETTEECHHHHHHHHHHTTTCEECEE
T ss_pred HHHHHHHHhCCCCc--------ccCCCCCcceeeEEEEEEECCeeEEEEECCCCCCcccchHHHHHHHHHHHhcCCCCEE
Confidence 56677766653211 11222 22445555567778889999999998766433222222 78999
Q ss_pred EEEEeCCCcccHHHH-HHHHHHHHhCCC-CCCCcEEEEEeCCCCC
Q 029517 84 VFVIDAACPSRFEDS-KTALEKVLRNED-LQGAPLLILANKQDLP 126 (192)
Q Consensus 84 i~v~D~~~~~s~~~~-~~~~~~i~~~~~-~~~~piiiv~nK~Dl~ 126 (192)
++|+|++... +... ..|+..+..... ....|+++|+||+|+.
T Consensus 121 l~V~~~d~~~-~~~~~~~~~~~l~~~~~~~~~~~~ivv~nK~Dl~ 164 (262)
T 3def_A 121 LYVDRLDVYA-VDELDKQVVIAITQTFGKEIWCKTLLVLTHAQFS 164 (262)
T ss_dssp EEEEESSCSC-CCHHHHHHHHHHHHHHCGGGGGGEEEEEECTTCC
T ss_pred EEEEcCCCCC-CCHHHHHHHHHHHHHhchhhhcCEEEEEeCcccC
Confidence 9999887544 3322 355555554321 1135999999999985
No 190
>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2
Probab=99.29 E-value=1.4e-13 Score=111.11 Aligned_cols=76 Identities=18% Similarity=0.145 Sum_probs=38.5
Q ss_pred hccccHHHHHHHHhhhhccCCCCCCCCCCCCcceEEEEE-------------------E-ecCEEEEEEeCCCCcc----
Q 029517 13 FTKTEFHTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRI-------------------E-VSNSKLVFWDLGGQPG---- 68 (192)
Q Consensus 13 ~kst~~~~l~~~~~~~~~~~~~~~~~~~~~T~g~~~~~~-------------------~-~~~~~~~i~D~~G~~~---- 68 (192)
=|||+||+|+++. ..+.+++.++..|+.|...... + ...+.+++|||||..+
T Consensus 12 GKSTL~n~L~~~~----~~~~~~p~tT~~~~~g~~~~~~~~~~~~l~~~~~p~~~~~~~~~~~~~i~lvDtpG~~~~a~~ 87 (397)
T 1wxq_A 12 GKSTFFSAATLVD----VEIANYPFTTIEANVGVTYAITDHPCKELGCSPNPQNYEYRNGLALIPVKMVDVAGLVPGAHE 87 (397)
T ss_dssp SHHHHHHHHHC------------------CCEEEEEEEEECSCSSSCCSCCCSSSCEETTEEEEEEEEEECC--------
T ss_pred CHHHHHHHHHCCC----CcccCCCCcccCCceEEEeeccCCchHHhhhhcccccccccCCcceEEEEEEECCCcccchhh
Confidence 4899999998764 2333555556667777543221 1 1136899999999753
Q ss_pred cHHHHH---HhhhcCCEEEEEEeCCCc
Q 029517 69 LRSIWE---KYYEEAHAVVFVIDAACP 92 (192)
Q Consensus 69 ~~~~~~---~~~~~~d~ii~v~D~~~~ 92 (192)
...... .+++.+|++++|+|+++.
T Consensus 88 ~~~l~~~~l~~i~~aD~il~VvD~~~~ 114 (397)
T 1wxq_A 88 GRGLGNKFLDDLRMASALIHVVDATGK 114 (397)
T ss_dssp -------CCCSSTTCSEEEEEEETTCC
T ss_pred hhhHHHHHHHHHhcCCEEEEEEecccc
Confidence 222233 246899999999999875
No 191
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=99.26 E-value=6.5e-12 Score=100.19 Aligned_cols=107 Identities=17% Similarity=0.181 Sum_probs=72.6
Q ss_pred CEEEEEEeCCCCccc-------------HHHHHHhhhcCCEEEEEEeCCCcccHHHHHHHHHHHHhCCCCCCCcEEEEEe
Q 029517 55 NSKLVFWDLGGQPGL-------------RSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILAN 121 (192)
Q Consensus 55 ~~~~~i~D~~G~~~~-------------~~~~~~~~~~~d~ii~v~D~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~n 121 (192)
...+.+|||||..++ ......|++++|++|+|+|+.+.+.... .|+..+.... ..+.|+++|+|
T Consensus 135 ~~~l~lvDtPG~~~~~~~~q~~~~~~~~~~~~~~~i~~~d~iilvv~~~~~~~~~~--~~~~l~~~~~-~~~~~~i~V~n 211 (360)
T 3t34_A 135 VVNLTLIDLPGLTKVAVDGQSDSIVKDIENMVRSYIEKPNCIILAISPANQDLATS--DAIKISREVD-PSGDRTFGVLT 211 (360)
T ss_dssp SCSEEEEECCCBCSSCCTTCCSSHHHHHHHHHHHHHHSSSEEEEEEEETTSCGGGC--HHHHHHHHSC-TTCTTEEEEEE
T ss_pred CCCeEEEECCCCCcCCcCCCchhHHHHHHHHHHHHhhcCCeEEEEeecccCCcCCH--HHHHHHHHhc-ccCCCEEEEEe
Confidence 457999999997765 6677889999999999998765442221 2333232222 14689999999
Q ss_pred CCCCCCC--CCHHHHHhHcCccccCCcceEEEEeeecCCCCHHHHHHHHH
Q 029517 122 KQDLPDA--VSADELARYLDLKKLDERVCMFEAVSGYDGFGIKESVEWLV 169 (192)
Q Consensus 122 K~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~e~~~~i~ 169 (192)
|+|+... ...+.+.... ...+..|+++|++.+.|+++.+..+.
T Consensus 212 K~Dl~~~~~~~~~~~~~~~-----~~~~~~~~~v~~~s~~~i~~~~~~~~ 256 (360)
T 3t34_A 212 KIDLMDKGTDAVEILEGRS-----FKLKYPWVGVVNRSQADINKNVDMIA 256 (360)
T ss_dssp CGGGCCTTCCSHHHHTTSS-----SCCSSCCEEECCCCHHHHHTTCCHHH
T ss_pred CCccCCCcccHHHHHcCcc-----ccccCCeEEEEECChHHhccCCCHHH
Confidence 9998752 2222222222 24467899999999988887765543
No 192
>1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A*
Probab=99.25 E-value=1.6e-11 Score=107.58 Aligned_cols=108 Identities=13% Similarity=0.074 Sum_probs=74.8
Q ss_pred ccccHHHHHHHHhhhhccCCC------CCCC--CCCCCcceEEEEEEec----------------CEEEEEEeCCCCccc
Q 029517 14 TKTEFHTLLEKLKSVYSNVEG------LPPD--RIVPTVGLNIGRIEVS----------------NSKLVFWDLGGQPGL 69 (192)
Q Consensus 14 kst~~~~l~~~~~~~~~~~~~------~~~~--~~~~T~g~~~~~~~~~----------------~~~~~i~D~~G~~~~ 69 (192)
|||++++|++..-.+....++ .... ....|++.....+.+. ++.+++|||||+.+|
T Consensus 32 KTTL~~~Ll~~~g~i~~~~~~~~~~~D~~~~E~~rgiTI~~~~~~~~~~~~~~~~~~i~~~~~~~~~~i~liDTPG~~df 111 (842)
T 1n0u_A 32 KSTLTDSLVQRAGIISAAKAGEARFTDTRKDEQERGITIKSTAISLYSEMSDEDVKEIKQKTDGNSFLINLIDSPGHVDF 111 (842)
T ss_dssp HHHHHHHHHHHHBCCBC------------------CCCBCCCEEEEEEECCHHHHHHCSSCCCSSEEEEEEECCCCCCSS
T ss_pred HHHHHHHHHHhcCCcccccCCCceeecCchhhhhcceeEeeceeEEEecccccccccccccccCCCceEEEEECcCchhh
Confidence 788888888763222111111 1111 1234666555444433 688999999999999
Q ss_pred HHHHHHhhhcCCEEEEEEeCCCcccHHHHHHHHHHHHhCCCCCCCcEEEEEeCCCCC
Q 029517 70 RSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLP 126 (192)
Q Consensus 70 ~~~~~~~~~~~d~ii~v~D~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~ 126 (192)
...+..+++.+|++|+|+|+++..+++....|.. ... .++|+++++||+|+.
T Consensus 112 ~~~~~~~l~~aD~ailVvDa~~g~~~qt~~~~~~-~~~----~~~p~ilviNK~D~~ 163 (842)
T 1n0u_A 112 SSEVTAALRVTDGALVVVDTIEGVCVQTETVLRQ-ALG----ERIKPVVVINKVDRA 163 (842)
T ss_dssp CHHHHHHHHTCSEEEEEEETTTBSCHHHHHHHHH-HHH----TTCEEEEEEECHHHH
T ss_pred HHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHH-HHH----cCCCeEEEEECCCcc
Confidence 9999999999999999999999888887655543 222 368999999999986
No 193
>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A
Probab=99.25 E-value=2.3e-12 Score=102.53 Aligned_cols=111 Identities=20% Similarity=0.138 Sum_probs=68.4
Q ss_pred CEEEEEEeCCCCc-------------ccHHHHHHhhhcCCEEEE-EEeCCCcccHHHHHHHHHHHHhCCCCCCCcEEEEE
Q 029517 55 NSKLVFWDLGGQP-------------GLRSIWEKYYEEAHAVVF-VIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILA 120 (192)
Q Consensus 55 ~~~~~i~D~~G~~-------------~~~~~~~~~~~~~d~ii~-v~D~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~ 120 (192)
...+.+|||||.. .+..+...|+++++.+++ |+|++....-.....++..+.. .+.|+++|+
T Consensus 129 ~~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiL~v~~a~~~~~~~~~~~i~~~~~~----~~~~~i~V~ 204 (353)
T 2x2e_A 129 VLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALKVAKEVDP----QGQRTIGVI 204 (353)
T ss_dssp CCSEEEEECCCBCSSCCTTCCTTHHHHHHHHHHHHHTSTTEEEEEEEETTSCGGGCHHHHHHHHHCT----TCTTEEEEE
T ss_pred CCCcEEEECCCCCCCccCCCchhHHHHHHHHHHHHHcCCCeEEEEEecCCCccchhHHHHHHHHhCc----CCCceEEEe
Confidence 4689999999952 455677788877776655 5555432221222223333321 478999999
Q ss_pred eCCCCCCCCC-HHHHHhHcCccccCCcceEEEEeeecCCCCHHHHHHHHHH
Q 029517 121 NKQDLPDAVS-ADELARYLDLKKLDERVCMFEAVSGYDGFGIKESVEWLVE 170 (192)
Q Consensus 121 nK~Dl~~~~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~e~~~~i~~ 170 (192)
||+|+.+... ..+..+... .........++.+||++|.|++++++++.+
T Consensus 205 NK~Dl~~~~~~~~~~~~~~~-~~l~~~~~~v~~~SA~~~~~i~~l~~~l~~ 254 (353)
T 2x2e_A 205 TKLDLMDEGTDARDVLENKL-LPLRRGYIGVVNRSQKDIDGKKDITAALAA 254 (353)
T ss_dssp ECGGGSCTTCCCHHHHTTCS-SCCTTCEEECCCCCHHHHHTTCCHHHHHHH
T ss_pred ccccccCcchhHHHHHhCCc-ccccCCceEEEeCCcccccccccHHHHHHH
Confidence 9999975322 122221110 001111246889999999999999999876
No 194
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=99.23 E-value=1.5e-12 Score=103.80 Aligned_cols=109 Identities=14% Similarity=0.060 Sum_probs=71.7
Q ss_pred cCEEEEEEeCCCCcccHHHHHHhhhcCCEEEEEEeCCCcccHHHHHHHHHHHHhCCCCCCCcEEEEEeCCCCCCCCCHH-
Q 029517 54 SNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAVSAD- 132 (192)
Q Consensus 54 ~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ii~v~D~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~~~~~~- 132 (192)
.++.+.||||||.... ....++.+|++++|+|+...+....+. . ...+.|.++|+||+|+......+
T Consensus 170 ~~~~~iiiDTpGi~~~---~~~~~~~aD~vl~V~d~~~~~~~~~l~-------~--~~~~~p~ivVlNK~Dl~~~~~~~~ 237 (355)
T 3p32_A 170 AGFDVILIETVGVGQS---EVAVANMVDTFVLLTLARTGDQLQGIK-------K--GVLELADIVVVNKADGEHHKEARL 237 (355)
T ss_dssp TTCCEEEEEECSCSSH---HHHHHTTCSEEEEEEESSTTCTTTTCC-------T--TSGGGCSEEEEECCCGGGHHHHHH
T ss_pred CCCCEEEEeCCCCCcH---HHHHHHhCCEEEEEECCCCCccHHHHH-------H--hHhhcCCEEEEECCCCcChhHHHH
Confidence 4678999999995432 223458899999999987665443221 1 11346999999999986421111
Q ss_pred ---HHHhHcCccccC--CcceEEEEeeecCCCCHHHHHHHHHHHHHh
Q 029517 133 ---ELARYLDLKKLD--ERVCMFEAVSGYDGFGIKESVEWLVEVMER 174 (192)
Q Consensus 133 ---~~~~~~~~~~~~--~~~~~~~~~Sa~~~~gi~e~~~~i~~~i~~ 174 (192)
++.+.+...... ..+.+++++||++|.||++++++|.+.+..
T Consensus 238 ~~~~l~~~l~~~~~~~~~~~~~vi~iSA~~g~Gi~~L~~~i~~~~~~ 284 (355)
T 3p32_A 238 AARELSAAIRLIYPREALWRPPVLTMSAVEGRGLAELWDTVERHRQV 284 (355)
T ss_dssp HHHHHHHHHHHHSTTCCSCCCCEEEEBGGGTBSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhccccccCCCCceEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 222221100000 114679999999999999999999887754
No 195
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=99.18 E-value=1.4e-10 Score=88.92 Aligned_cols=106 Identities=8% Similarity=-0.011 Sum_probs=62.8
Q ss_pred ccccHHHHHHHHhhhhccCCCCCCCCCCCCcceEEEEEEecCEEEEEEeCCCCcccH-------HHHHHh--hhcCCEEE
Q 029517 14 TKTEFHTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPGLR-------SIWEKY--YEEAHAVV 84 (192)
Q Consensus 14 kst~~~~l~~~~~~~~~~~~~~~~~~~~~T~g~~~~~~~~~~~~~~i~D~~G~~~~~-------~~~~~~--~~~~d~ii 84 (192)
|||++|+|++.-..... + ....|.......+...++.+.+|||||+.++. ..+..+ .+.+|+++
T Consensus 52 KSSLin~l~~~~~~~~~---~----~~~~t~~~~~~~~~~~~~~l~iiDTpG~~~~~~~~~~~~~~i~~~~~~~~~d~il 124 (270)
T 1h65_A 52 KSSTVNSIIGERVVSIS---P----FQSEGPRPVMVSRSRAGFTLNIIDTPGLIEGGYINDMALNIIKSFLLDKTIDVLL 124 (270)
T ss_dssp HHHHHHHHHTSCCSCCC---S----SSCCCSSCEEEEEEETTEEEEEEECCCSEETTEECHHHHHHHHHHTTTCEECEEE
T ss_pred HHHHHHHHhCCCccccc---C----CCCcceeeEEEEEeeCCeEEEEEECCCCCCCccchHHHHHHHHHHhhcCCCCEEE
Confidence 67777777753221111 1 11122223334466678899999999986543 122222 24799999
Q ss_pred EEEeCCCcccHHHH-HHHHHHHHhCCC-CCCCcEEEEEeCCCCCC
Q 029517 85 FVIDAACPSRFEDS-KTALEKVLRNED-LQGAPLLILANKQDLPD 127 (192)
Q Consensus 85 ~v~D~~~~~s~~~~-~~~~~~i~~~~~-~~~~piiiv~nK~Dl~~ 127 (192)
+|+|++.. ++... ..|+..+..... ....|+++|+||+|+..
T Consensus 125 ~v~~~d~~-~~~~~~~~~~~~l~~~~~~~~~~~iivV~nK~Dl~~ 168 (270)
T 1h65_A 125 YVDRLDAY-RVDNLDKLVAKAITDSFGKGIWNKAIVALTHAQFSP 168 (270)
T ss_dssp EEEESSCC-CCCHHHHHHHHHHHHHHCGGGGGGEEEEEECCSCCC
T ss_pred EEEeCCCC-cCCHHHHHHHHHHHHHhCcccccCEEEEEECcccCC
Confidence 99998653 34322 356655554311 01269999999999864
No 196
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=99.16 E-value=6.1e-12 Score=98.04 Aligned_cols=110 Identities=11% Similarity=0.166 Sum_probs=60.0
Q ss_pred CEEEEEEeCCCC-------cccHHHHH-------HhhhcC-------------CEEEEEEeCCCcccHHHHH-HHHHHHH
Q 029517 55 NSKLVFWDLGGQ-------PGLRSIWE-------KYYEEA-------------HAVVFVIDAACPSRFEDSK-TALEKVL 106 (192)
Q Consensus 55 ~~~~~i~D~~G~-------~~~~~~~~-------~~~~~~-------------d~ii~v~D~~~~~s~~~~~-~~~~~i~ 106 (192)
...+.+||++|. +.+..... .+++.. .+++++.+++.. +++.+. +++..+
T Consensus 75 ~~~ltv~Dt~g~~~~~~~~e~~~~l~~~l~~~~~~~~~~~sgg~rqrv~~ara~~ll~ldePt~~-~Ld~~~~~~l~~l- 152 (301)
T 2qnr_A 75 KLRLTVVDTPGYGDAINCRDCFKTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFGH-GLKPLDVAFMKAI- 152 (301)
T ss_dssp CEEEEEEEEC-----------CTTHHHHHHHHHHHHHHHHTSSCCTTCCCCCCCEEEEEECSSSS-SCCHHHHHHHHHH-
T ss_pred ccCcchhhhhhhhhhcCcHHHHHHHHHHHHHHHHHHHHHhCHHhhhhhhhhhhhheeeeecCccc-CCCHHHHHHHHHH-
Confidence 568999999998 55544443 555443 335555554421 233322 233332
Q ss_pred hCCCCCCCcEEEEEeCCCCCCCC----CHHHHHhHcCccccCCcceEEEEeeecCCCCHHHHHHHHHHHHHhcc
Q 029517 107 RNEDLQGAPLLILANKQDLPDAV----SADELARYLDLKKLDERVCMFEAVSGYDGFGIKESVEWLVEVMERSK 176 (192)
Q Consensus 107 ~~~~~~~~piiiv~nK~Dl~~~~----~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~e~~~~i~~~i~~~~ 176 (192)
. ...|+++|+||.|+.... ..+++.+.+. ..+++++++||++| |++++|.++.+.+.+..
T Consensus 153 --~--~~~~iilV~~K~Dl~~~~e~~~~~~~~~~~~~-----~~~~~~~e~Sa~~~-~v~e~f~~l~~~i~~~~ 216 (301)
T 2qnr_A 153 --H--NKVNIVPVIAKADTLTLKERERLKKRILDEIE-----EHNIKIYHLPDAES-DEDEDFKEQTRLLKASI 216 (301)
T ss_dssp --T--TTSCEEEEECCGGGSCHHHHHHHHHHHHHHHH-----HTTCCCCCCC----------CHHHHHHHHTTC
T ss_pred --H--hcCCEEEEEEeCCCCCHHHHHHHHHHHHHHHH-----HcCCeEEecCCccc-cccHHHHHHHHHhhcCC
Confidence 1 357999999999987521 1234555554 45689999999999 99999999999887543
No 197
>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2
Probab=99.14 E-value=4.8e-10 Score=89.12 Aligned_cols=71 Identities=20% Similarity=0.215 Sum_probs=46.6
Q ss_pred hccccHHHHHHHHhhhhccCCCCCCCCCCCCcceEEEEEEec-----------------CEEEEEEeCCCCcccHH----
Q 029517 13 FTKTEFHTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVS-----------------NSKLVFWDLGGQPGLRS---- 71 (192)
Q Consensus 13 ~kst~~~~l~~~~~~~~~~~~~~~~~~~~~T~g~~~~~~~~~-----------------~~~~~i~D~~G~~~~~~---- 71 (192)
=|||+||+|.+.- ..+.+++..+..|+.|. +... ...+++|||||..++..
T Consensus 14 GKSTL~n~Lt~~~----~~v~~~p~tTi~p~~g~----v~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~a~~~~g 85 (363)
T 1jal_A 14 GKSTLFNALTKAG----IEAANYPFCTIEPNTGV----VPMPDPRLDALAEIVKPERILPTTMEFVDIAGLVAGASKGEG 85 (363)
T ss_dssp SHHHHHHHHHHTC----------CCCCCCCCSSE----EECCCHHHHHHHHHHCCSEEECCEEEEEECCSCCTTHHHHGG
T ss_pred CHHHHHHHHHCCC----CcccCCCCceECceEEE----EecCCcccceeeeeecccceeeeEEEEEECCCCcccccccch
Confidence 4899999988643 23345555555666653 2222 26899999999876542
Q ss_pred ---HHHHhhhcCCEEEEEEeCCC
Q 029517 72 ---IWEKYYEEAHAVVFVIDAAC 91 (192)
Q Consensus 72 ---~~~~~~~~~d~ii~v~D~~~ 91 (192)
....+++++|++++|+|+++
T Consensus 86 l~~~fl~~ir~ad~il~VvD~~~ 108 (363)
T 1jal_A 86 LGNKFLANIRETDAIGHVVRCFE 108 (363)
T ss_dssp GTCCHHHHHHTCSEEEEEEECSC
T ss_pred HHHHHHHHHHhcCeEEEEEecCC
Confidence 23456899999999999986
No 198
>3j25_A Tetracycline resistance protein TETM; antibiotic resistance, translation; HET: GCP; 7.20A {Enterococcus faecalis}
Probab=99.14 E-value=8.5e-11 Score=100.22 Aligned_cols=156 Identities=15% Similarity=0.132 Sum_probs=101.7
Q ss_pred ccccHHHHHHHHhhhh--ccCCCC--CCCCC------CCCcceEEEEEEecCEEEEEEeCCCCcccHHHHHHhhhcCCEE
Q 029517 14 TKTEFHTLLEKLKSVY--SNVEGL--PPDRI------VPTVGLNIGRIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAV 83 (192)
Q Consensus 14 kst~~~~l~~~~~~~~--~~~~~~--~~~~~------~~T~g~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~i 83 (192)
|||+..+|+..--.+. ..+... ..+.. .-|+......+.+++..++++|||||.+|.......++-+|++
T Consensus 15 KTTL~e~LL~~~G~i~~~g~v~~g~~~~D~~~~EreRGITI~s~~~~~~~~~~~iNlIDTPGH~DF~~Ev~raL~~~Dga 94 (638)
T 3j25_A 15 KTTLTESLLYNSGAITELGSVDKGTTRTDNTLLERQRGITIQTGITSFQWENTKVNIIDTPGHMDFLAEVYRSLSVLDGA 94 (638)
T ss_dssp SHHHHHHHHHHHTCCSSCSSCCCSCCSTTCSTTHHHHSSCSSCCCCCCBCSSCBCCCEECCCSSSTHHHHHHHHTTCSEE
T ss_pred HHHHHHHHHHHcCCCccccccccCCcccCCcHHHHhCCCcEEeeeEEEEECCEEEEEEECCCcHHHHHHHHHHHHHhCEE
Confidence 7899988886543211 111111 11111 2244444445777888999999999999999999999999999
Q ss_pred EEEEeCCCcccHHHHHHHHHHHHhCCCCCCCcEEEEEeCCCCCCCCCH---HHHHhHcCccc------------------
Q 029517 84 VFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAVSA---DELARYLDLKK------------------ 142 (192)
Q Consensus 84 i~v~D~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~~~~~---~~~~~~~~~~~------------------ 142 (192)
|+|+|+...-.-+.. ..++...+. ++|.++++||+|.....-. +++.+.+....
T Consensus 95 vlVVDa~~GV~~qT~-~v~~~a~~~----~lp~i~~INKmDr~~a~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~ 169 (638)
T 3j25_A 95 ILLISAKDGVQAQTR-ILFHALRKM----GIPTIFFINKIDQNGIDLSTVYQDIKEKLSAEIVIKQKVELYPNVCVTNFT 169 (638)
T ss_dssp ECCEESSCTTCSHHH-HHHHHHHHH----TCSCEECCEECCSSSCCSHHHHHHHHHTTCCCCCCCCCCCSCGGGCCCCCC
T ss_pred EEEEeCCCCCcHHHH-HHHHHHHHc----CCCeEEEEeccccccCCHHHHHHHHHHHhCCCccccceeEeeccccccccc
Confidence 999999876544443 233333333 6899999999998763222 22222221000
Q ss_pred --------------------------------------cCCcceEEEEeeecCCCCHHHHHHHHHHHHHh
Q 029517 143 --------------------------------------LDERVCMFEAVSGYDGFGIKESVEWLVEVMER 174 (192)
Q Consensus 143 --------------------------------------~~~~~~~~~~~Sa~~~~gi~e~~~~i~~~i~~ 174 (192)
....-.+++..||+++.||+.+++.+.+.+..
T Consensus 170 ~~~~~e~~~e~~d~l~e~~~~~~~~~~~~~~~~~~~~~~~~~~~Pv~~gSa~~~~Gv~~LLd~i~~~~p~ 239 (638)
T 3j25_A 170 ESEQWDTVIEGNDDLLEKYMSGKSLEALELEQEESIRFQNCSLFPLYHGSAKSNIGIDNLIEVITNKFYS 239 (638)
T ss_dssp CHHHHHHHHHHHCHHHHHHHHHCCCCSHHHHHHHHHHHHHTSCCCCCCCCSTTCCSHHHHHHHHHHSCCC
T ss_pred hhhhhhhhhcccHHHHhhhccCCccchHHHHHHHhhhhcccccccccccccccCCCchhHhhhhhccccC
Confidence 00123567889999999999999999876654
No 199
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=99.10 E-value=4.4e-11 Score=90.93 Aligned_cols=116 Identities=16% Similarity=0.087 Sum_probs=71.1
Q ss_pred CEEEEEEeCCCCcccHHH------HHHhhhcCCEEEEEEeCCCcccHHHHHHHH---HHHHhCCCCCCCcEEEEEeCCCC
Q 029517 55 NSKLVFWDLGGQPGLRSI------WEKYYEEAHAVVFVIDAACPSRFEDSKTAL---EKVLRNEDLQGAPLLILANKQDL 125 (192)
Q Consensus 55 ~~~~~i~D~~G~~~~~~~------~~~~~~~~d~ii~v~D~~~~~s~~~~~~~~---~~i~~~~~~~~~piiiv~nK~Dl 125 (192)
.+.+.||||||+...... ....+.. +++++++|+....+........ ...... .+.|+++|+||+|+
T Consensus 108 ~~d~iiiDtpG~~~~~~~~~l~~~~~~~~~~-~~iv~vvD~~~~~~~~~~~~~~~~~~~~~~~---~~~p~~iv~NK~D~ 183 (262)
T 1yrb_A 108 ENDYVLIDTPGQMETFLFHEFGVRLMENLPY-PLVVYISDPEILKKPNDYCFVRFFALLIDLR---LGATTIPALNKVDL 183 (262)
T ss_dssp HCSEEEEECCSSHHHHHHSHHHHHHHHTSSS-CEEEEEECGGGCCSHHHHHHHHHHHHHHHHH---HTSCEEEEECCGGG
T ss_pred cCCEEEEeCCCccchhhhhhhHHHHHHHHhh-ceEEeccchhhhcCHHHHHHHHHHHHHHhcc---cCCCeEEEEecccc
Confidence 358999999998765332 1134556 8999999986544333322211 111111 36899999999998
Q ss_pred CCCCCHHHHHhHcC-cc----c------------------cC--CcceEEEEeeecCCCCHHHHHHHHHHHHHh
Q 029517 126 PDAVSADELARYLD-LK----K------------------LD--ERVCMFEAVSGYDGFGIKESVEWLVEVMER 174 (192)
Q Consensus 126 ~~~~~~~~~~~~~~-~~----~------------------~~--~~~~~~~~~Sa~~~~gi~e~~~~i~~~i~~ 174 (192)
......+++.+.+. .. . .. ....+++++||++|.|+++++++|.+.+..
T Consensus 184 ~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~SA~~~~gi~~l~~~i~~~~~~ 257 (262)
T 1yrb_A 184 LSEEEKERHRKYFEDIDYLTARLKLDPSMQGLMAYKMCSMMTEVLPPVRVLYLSAKTREGFEDLETLAYEHYCT 257 (262)
T ss_dssp CCHHHHHHHHHHHHCHHHHHHHHHHCCSHHHHHHHHHHHHHHHHSCCCCCEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred cccccHHHHHHHHhChHHHHHHHhccccccchhHhHHHHHHHHhcCcccceEEEecCcccHHHHHHHHHHHhcc
Confidence 75321222222210 00 0 00 112478999999999999999999887653
No 200
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Probab=99.08 E-value=8.1e-10 Score=88.16 Aligned_cols=75 Identities=19% Similarity=0.131 Sum_probs=51.5
Q ss_pred hccccHHHHHHHHhhhhccCCCCCCCCCCCCcceEEEE----------EE-------ecCEEEEEEeCCCCccc------
Q 029517 13 FTKTEFHTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGR----------IE-------VSNSKLVFWDLGGQPGL------ 69 (192)
Q Consensus 13 ~kst~~~~l~~~~~~~~~~~~~~~~~~~~~T~g~~~~~----------~~-------~~~~~~~i~D~~G~~~~------ 69 (192)
=|||+||+|.+.- +.+.+++..+..|++|..... +. .....+++|||||..+.
T Consensus 13 GKSTL~n~L~~~~----~~v~~~p~~Ti~pn~g~~~v~~~~l~~~~~~~~~~~~~~~~~~~~i~lvDtpGl~~~a~~~~~ 88 (368)
T 2dby_A 13 GKSTLFNALTRAN----ALAANYPFATIDKNVGVVPLEDERLYALQRTFAKGERVPPVVPTHVEFVDIAGLVKGAHKGEG 88 (368)
T ss_dssp SHHHHHHHHHHHH----TTCSSCCGGGGSTTEEEEECCCHHHHHHHHHHCBTTBCCCEECCEEEEEECCSCCCCCCSSSC
T ss_pred CHHHHHHHHhCCC----CcccCCCCceeccceeeEecChHHHHHHHHHhcccccccccCCceEEEEECCCccccccccch
Confidence 3899999998763 344566666677777753110 00 12467999999997643
Q ss_pred -HHHHHHhhhcCCEEEEEEeCCC
Q 029517 70 -RSIWEKYYEEAHAVVFVIDAAC 91 (192)
Q Consensus 70 -~~~~~~~~~~~d~ii~v~D~~~ 91 (192)
......+++.+|++++|+|+++
T Consensus 89 lg~~fl~~ir~ad~ii~VvD~~~ 111 (368)
T 2dby_A 89 LGNQFLAHIREVAAIAHVLRCFP 111 (368)
T ss_dssp TTHHHHHHHHTCSEEEEEEECCC
T ss_pred HHHHHHHHHHhCCEEEEEEECCC
Confidence 2344557899999999999975
No 201
>4fn5_A EF-G 1, elongation factor G 1; translation, translation-antibiotic compl; HET: 0UO; 2.90A {Pseudomonas aeruginosa}
Probab=99.07 E-value=2.8e-09 Score=91.94 Aligned_cols=68 Identities=16% Similarity=0.166 Sum_probs=56.0
Q ss_pred CEEEEEEeCCCCcccHHHHHHhhhcCCEEEEEEeCCCcccHHHHHHHHHHHHhCCCCCCCcEEEEEeCCCCCC
Q 029517 55 NSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPD 127 (192)
Q Consensus 55 ~~~~~i~D~~G~~~~~~~~~~~~~~~d~ii~v~D~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~ 127 (192)
++.++++|||||-+|.......++-||++|+|+|+...-..+.-.-| +...+. ++|.++++||+|...
T Consensus 84 ~~~iNlIDTPGHvDF~~Ev~~aLr~~DgavlvVDaveGV~~qT~~v~-~~a~~~----~lp~i~~iNKiDr~~ 151 (709)
T 4fn5_A 84 NYRVNVIDTPGHVDFTIEVERSLRVLDGAVVVFCGTSGVEPQSETVW-RQANKY----GVPRIVYVNKMDRQG 151 (709)
T ss_dssp CEEEEEECCCSCTTCHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHH-HHHHHH----TCCEEEEEECSSSTT
T ss_pred CEEEEEEeCCCCcccHHHHHHHHHHhCeEEEEEECCCCCchhHHHHH-HHHHHc----CCCeEEEEccccccC
Confidence 68999999999999999999999999999999999877655543333 333333 689999999999865
No 202
>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}
Probab=99.07 E-value=1.4e-10 Score=97.31 Aligned_cols=67 Identities=13% Similarity=0.225 Sum_probs=52.9
Q ss_pred EEEEEeCCCCcc-----------cHHHHHHhhhcCCEEEEEEeCCCcccHHHHHHHHHHHHhCCCCCCCcEEEEEeCCCC
Q 029517 57 KLVFWDLGGQPG-----------LRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDL 125 (192)
Q Consensus 57 ~~~i~D~~G~~~-----------~~~~~~~~~~~~d~ii~v~D~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl 125 (192)
.+.+|||||... +...+..+++.+|++++|+|+++....+....++..+.. .+.|+++|+||+|+
T Consensus 155 ~l~lIDTPG~~~~~~~~~~~~~~f~~~~~~~l~~aD~il~VvDa~~~~~~~~~~~~l~~l~~----~~~pvilVlNK~Dl 230 (550)
T 2qpt_A 155 SISIIDTPGILSGAKQRVSRGYDFPAVLRWFAERVDLIILLFDAHKLEISDEFSEAIGALRG----HEDKIRVVLNKADM 230 (550)
T ss_dssp HCEEEECCCBCC-------CCSCHHHHHHHHHHHCSEEEEEEETTSCCCCHHHHHHHHHTTT----CGGGEEEEEECGGG
T ss_pred CEEEEECcCCCCcchhHHHHHhhHHHHHHHHHHhCCEEEEEEeCCcCCCCHHHHHHHHHHHh----cCCCEEEEEECCCc
Confidence 589999999764 556777889999999999999876555555666655533 35799999999998
Q ss_pred CC
Q 029517 126 PD 127 (192)
Q Consensus 126 ~~ 127 (192)
..
T Consensus 231 ~~ 232 (550)
T 2qpt_A 231 VE 232 (550)
T ss_dssp SC
T ss_pred cC
Confidence 75
No 203
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=99.05 E-value=8.9e-11 Score=92.99 Aligned_cols=108 Identities=15% Similarity=0.100 Sum_probs=67.0
Q ss_pred cCEEEEEEeCCCCcccHHHHHHhhhcCCEEEEEEeCCCcccHHHHHHHHHHHHhCCCCCCCcEEEEEeCCCCCCCCCHH-
Q 029517 54 SNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAVSAD- 132 (192)
Q Consensus 54 ~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ii~v~D~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~~~~~~- 132 (192)
.++.+.||||||...... ...+.+|++++|+|++....++.+.. .. .+.|.++|+||+|+.+.....
T Consensus 147 ~~~~i~liDTpG~~~~~~---~~~~~aD~vl~Vvd~~~~~~~~~l~~---~~------~~~p~ivv~NK~Dl~~~~~~~~ 214 (341)
T 2p67_A 147 AGYDVVIVETVGVGQSET---EVARMVDCFISLQIAGGGDDLQGIKK---GL------MEVADLIVINKDDGDNHTNVAI 214 (341)
T ss_dssp TTCSEEEEEEECCTTHHH---HHHTTCSEEEEEECC------CCCCH---HH------HHHCSEEEECCCCTTCHHHHHH
T ss_pred cCCCEEEEeCCCccchHH---HHHHhCCEEEEEEeCCccHHHHHHHH---hh------hcccCEEEEECCCCCChHHHHH
Confidence 367899999999765433 24689999999999975533211111 00 146889999999987521111
Q ss_pred ---HHHhHcCcccc--CCcceEEEEeeecCCCCHHHHHHHHHHHHH
Q 029517 133 ---ELARYLDLKKL--DERVCMFEAVSGYDGFGIKESVEWLVEVME 173 (192)
Q Consensus 133 ---~~~~~~~~~~~--~~~~~~~~~~Sa~~~~gi~e~~~~i~~~i~ 173 (192)
++.+.+..... .....+++++||++|.|+++++++|.+.+.
T Consensus 215 ~~~~l~~~l~~~~~~~~~~~~~vi~iSA~~g~gi~~L~~~l~~~~~ 260 (341)
T 2p67_A 215 ARHMYESALHILRRKYDEWQPRVLTCSALEKRGIDEIWHAIIDFKT 260 (341)
T ss_dssp HHHHHHHHHHHSCCSBTTBCCEEEECBGGGTBSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccccccCCCCcEEEeeCCCCCCHHHHHHHHHHHHH
Confidence 22221110000 001357899999999999999999988665
No 204
>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}
Probab=99.04 E-value=1.3e-09 Score=87.08 Aligned_cols=102 Identities=19% Similarity=0.116 Sum_probs=64.3
Q ss_pred ccccHHHHHHHHhhhhccCCCCCCCCCCCCcceEEEEEEecCEEEEEEeCCCCcc-------cHHHHHHhhhcCCEEEEE
Q 029517 14 TKTEFHTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPG-------LRSIWEKYYEEAHAVVFV 86 (192)
Q Consensus 14 kst~~~~l~~~~~~~~~~~~~~~~~~~~~T~g~~~~~~~~~~~~~~i~D~~G~~~-------~~~~~~~~~~~~d~ii~v 86 (192)
|||+||+|.+. .+.+++++.++ .....+.+...+.+++++||||.-. ........++.||++++|
T Consensus 85 KSTL~n~Lt~~----~~~v~~~pftT----~~~~~g~~~~~~~~i~l~D~pGl~~~a~~~~~~g~~~l~~i~~ad~il~v 156 (376)
T 4a9a_A 85 KSTLLSKLTGT----ESEAAEYEFTT----LVTVPGVIRYKGAKIQMLDLPGIIDGAKDGRGRGKQVIAVARTCNLLFII 156 (376)
T ss_dssp HHHHHHHHHSB----CCCGGGTCSSC----CCEEEEEEEETTEEEEEEECGGGCCC-----CHHHHHHHHHHHCSEEEEE
T ss_pred HHHHHHHHhCC----CCcccCCCCce----eeeeeEEEEeCCcEEEEEeCCCccCCchhhhHHHHHHHHHHHhcCccccc
Confidence 77777777653 34455555444 4445555788899999999999421 122344567899999999
Q ss_pred EeCCCcc-cHHHHHHHHHHHHhCCCCCCCcEEEEEeCCCC
Q 029517 87 IDAACPS-RFEDSKTALEKVLRNEDLQGAPLLILANKQDL 125 (192)
Q Consensus 87 ~D~~~~~-s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl 125 (192)
+|++++. .++.+...+..+.. .....|.+++.||.|.
T Consensus 157 vD~~~p~~~~~~i~~EL~~~~~--~l~~k~~~i~~nK~d~ 194 (376)
T 4a9a_A 157 LDVNKPLHHKQIIEKELEGVGI--RLNKTPPDILIKKKEK 194 (376)
T ss_dssp EETTSHHHHHHHHHHHHHHTTE--EETCCCCCEEEEECSS
T ss_pred cccCccHHHHHHHHHHHHHhhH--hhccCChhhhhhHhhh
Confidence 9998763 22223333322211 1235677778888886
No 205
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=99.01 E-value=4.4e-10 Score=86.74 Aligned_cols=104 Identities=18% Similarity=0.240 Sum_probs=71.6
Q ss_pred EEeCCCCc-ccHHHHHHhhhcCCEEEEEEeCCCcccHHHHHHHHHHHHhCCCCCCCcEEEEEeCCCCCCCCCHHHHHhHc
Q 029517 60 FWDLGGQP-GLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAVSADELARYL 138 (192)
Q Consensus 60 i~D~~G~~-~~~~~~~~~~~~~d~ii~v~D~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~ 138 (192)
|-..|||. .........++.+|+++.|+|+.++.+... ..+.++. .++|.++|+||+|+......+.+.+++
T Consensus 3 i~w~PGhm~ka~~~~~~~l~~aDvVl~VvDAr~p~~~~~--~~l~~~l-----~~kp~ilVlNK~DL~~~~~~~~~~~~~ 75 (282)
T 1puj_A 3 IQWFPGHMAKARREVTEKLKLIDIVYELVDARIPMSSRN--PMIEDIL-----KNKPRIMLLNKADKADAAVTQQWKEHF 75 (282)
T ss_dssp ------CTTHHHHHHHHHGGGCSEEEEEEETTSTTTTSC--HHHHHHC-----SSSCEEEEEECGGGSCHHHHHHHHHHH
T ss_pred CcCCchHHHHHHHHHHHHHhhCCEEEEEEeCCCCCccCC--HHHHHHH-----CCCCEEEEEECcccCCHHHHHHHHHHH
Confidence 45578876 556677788999999999999998866542 1222222 468999999999997532223344444
Q ss_pred CccccCCcceEEEEeeecCCCCHHHHHHHHHHHHHhc
Q 029517 139 DLKKLDERVCMFEAVSGYDGFGIKESVEWLVEVMERS 175 (192)
Q Consensus 139 ~~~~~~~~~~~~~~~Sa~~~~gi~e~~~~i~~~i~~~ 175 (192)
+ ..+++++.+||+++.|++++++.+.+.+...
T Consensus 76 ~-----~~g~~~i~iSA~~~~gi~~L~~~i~~~l~~~ 107 (282)
T 1puj_A 76 E-----NQGIRSLSINSVNGQGLNQIVPASKEILQEK 107 (282)
T ss_dssp H-----TTTCCEEECCTTTCTTGGGHHHHHHHHHHHH
T ss_pred H-----hcCCcEEEEECCCcccHHHHHHHHHHHHHHH
Confidence 3 3456899999999999999999988776543
No 206
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=99.01 E-value=4.6e-10 Score=89.76 Aligned_cols=100 Identities=18% Similarity=0.138 Sum_probs=70.6
Q ss_pred CCcccHHHHHHhhhcCCEEEEEEeCCCcccHHHHHHHHHHHHhCCCCCCCcEEEEEeCCCCCC-CCCHHHHHhHcCcccc
Q 029517 65 GQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPD-AVSADELARYLDLKKL 143 (192)
Q Consensus 65 G~~~~~~~~~~~~~~~d~ii~v~D~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~-~~~~~~~~~~~~~~~~ 143 (192)
..++|...+..+.+.++++++|+|++++. ..|...+.+.. .++|+++|+||+|+.. ....+.+.+++.. ..
T Consensus 55 ~~e~f~~~l~~i~~~~~~il~VvD~~d~~-----~~~~~~l~~~~--~~~p~ilV~NK~DL~~~~~~~~~~~~~l~~-~~ 126 (368)
T 3h2y_A 55 TDDDFLRILNGIGKSDALVVKIVDIFDFN-----GSWLPGLHRFV--GNNKVLLVGNKADLIPKSVKHDKVKHWMRY-SA 126 (368)
T ss_dssp -CHHHHHHHHHHHHSCCEEEEEEETTSHH-----HHCCTTHHHHS--SSSCEEEEEECGGGSCTTSCHHHHHHHHHH-HH
T ss_pred CHHHHHHHHHHHhccCcEEEEEEECCCCc-----ccHHHHHHHHh--CCCcEEEEEEChhcCCcccCHHHHHHHHHH-HH
Confidence 46789999999999999999999998742 23433333332 3789999999999965 3334444444220 00
Q ss_pred CCcce---EEEEeeecCCCCHHHHHHHHHHHH
Q 029517 144 DERVC---MFEAVSGYDGFGIKESVEWLVEVM 172 (192)
Q Consensus 144 ~~~~~---~~~~~Sa~~~~gi~e~~~~i~~~i 172 (192)
...++ .++++||++|.|+++++++|.+..
T Consensus 127 ~~~g~~~~~v~~iSA~~g~gi~~L~~~l~~~~ 158 (368)
T 3h2y_A 127 KQLGLKPEDVFLISAAKGQGIAELADAIEYYR 158 (368)
T ss_dssp HHTTCCCSEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred HHcCCCcccEEEEeCCCCcCHHHHHhhhhhhc
Confidence 12234 799999999999999999987644
No 207
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=99.00 E-value=5.4e-11 Score=88.15 Aligned_cols=107 Identities=15% Similarity=0.137 Sum_probs=70.5
Q ss_pred cCEEEEEEeCCCCcccHHHHHHhhhcCCEEEEEEeCCCcccHHHHHHHHHHHHhCCCCCCCcEEEEEeCCCCCCC--CCH
Q 029517 54 SNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDA--VSA 131 (192)
Q Consensus 54 ~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ii~v~D~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~~--~~~ 131 (192)
....+.+|||+|+..... .+-...+++++|+|++...... ..+... .+.|+++++||+|+... ...
T Consensus 107 ~~~d~iiidt~G~~~~~~---~~~~~~~~~i~vvd~~~~~~~~--~~~~~~-------~~~~~iiv~NK~Dl~~~~~~~~ 174 (221)
T 2wsm_A 107 SDCDLLLIENVGNLICPV---DFDLGENYRVVMVSVTEGDDVV--EKHPEI-------FRVADLIVINKVALAEAVGADV 174 (221)
T ss_dssp TTCSEEEEEEEEBSSGGG---GCCCSCSEEEEEEEGGGCTTHH--HHCHHH-------HHTCSEEEEECGGGHHHHTCCH
T ss_pred CCCCEEEEeCCCCCCCCc---hhccccCcEEEEEeCCCcchhh--hhhhhh-------hhcCCEEEEecccCCcchhhHH
Confidence 356789999999521100 1113578899999988654221 111111 24789999999998642 455
Q ss_pred HHHHhHcCccccCCcceEEEEeeecCCCCHHHHHHHHHHHHHhc
Q 029517 132 DELARYLDLKKLDERVCMFEAVSGYDGFGIKESVEWLVEVMERS 175 (192)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~e~~~~i~~~i~~~ 175 (192)
+++.+.+... ....+++++||++|.|+++++++|.+.+...
T Consensus 175 ~~~~~~~~~~---~~~~~i~~~Sa~~g~gi~~l~~~l~~~~~~~ 215 (221)
T 2wsm_A 175 EKMKADAKLI---NPRAKIIEMDLKTGKGFEEWIDFLRGILNVH 215 (221)
T ss_dssp HHHHHHHHHH---CTTSEEEECBTTTTBTHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHh---CCCCeEEEeecCCCCCHHHHHHHHHHHHHHH
Confidence 6665555410 2257899999999999999999999877544
No 208
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=98.97 E-value=1e-09 Score=87.21 Aligned_cols=108 Identities=15% Similarity=0.092 Sum_probs=64.6
Q ss_pred cCEEEEEEeCCCCcccHHHHHHhhhcCCEEEEEEeCCCcccHHHHHHHHHHHHhCCCCCCCcEEEEEeCCCCCCCCC---
Q 029517 54 SNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAVS--- 130 (192)
Q Consensus 54 ~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ii~v~D~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~~~~--- 130 (192)
.++.+.++||+|.... .......+|++++|+|++.+...+.+.. .+ ...|.++++||+|+.+...
T Consensus 165 ~~~~~iliDT~Gi~~~---~~~l~~~~d~vl~V~d~~~~~~~~~i~~---~i------l~~~~ivVlNK~Dl~~~~~~~~ 232 (349)
T 2www_A 165 AGYDIILIETVGVGQS---EFAVADMVDMFVLLLPPAGGDELQGIKR---GI------IEMADLVAVTKSDGDLIVPARR 232 (349)
T ss_dssp TTCSEEEEECCCC--C---HHHHHTTCSEEEEEECCC---------------------CCSCSEEEECCCSGGGHHHHHH
T ss_pred CCCCEEEEECCCcchh---hhhHHhhCCEEEEEEcCCcchhHHHhHH---HH------HhcCCEEEEeeecCCCchhHHH
Confidence 4678899999996422 2334678999999999986543222111 11 2468899999999863211
Q ss_pred -HHHHHhHcCcccc--CCcceEEEEeeecCCCCHHHHHHHHHHHHH
Q 029517 131 -ADELARYLDLKKL--DERVCMFEAVSGYDGFGIKESVEWLVEVME 173 (192)
Q Consensus 131 -~~~~~~~~~~~~~--~~~~~~~~~~Sa~~~~gi~e~~~~i~~~i~ 173 (192)
...+...+..... .....+++.+||++|.|+++++++|.+.+.
T Consensus 233 ~~~~l~~~l~~~~~~a~~~~~~vi~iSA~~g~Gi~~L~~~I~~~~~ 278 (349)
T 2www_A 233 IQAEYVSALKLLRKRSQVWKPKVIRISARSGEGISEMWDKMKDFQD 278 (349)
T ss_dssp HHHHHHHHHTTCC-----CCCEEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCccccCCCceEEEEecCCCCCHHHHHHHHHHHHH
Confidence 1122222221000 011357899999999999999999988654
No 209
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=98.92 E-value=1.6e-09 Score=86.72 Aligned_cols=100 Identities=21% Similarity=0.223 Sum_probs=69.6
Q ss_pred CCcccHHHHHHhhhcCCEEEEEEeCCCcccHHHHHHHHHHHHhCCCCCCCcEEEEEeCCCCCCC-CCHHHHHhHcCcccc
Q 029517 65 GQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDA-VSADELARYLDLKKL 143 (192)
Q Consensus 65 G~~~~~~~~~~~~~~~d~ii~v~D~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~~-~~~~~~~~~~~~~~~ 143 (192)
.+++|+..+..+.++++++++|+|++++.+ .|...+.+.. .+.|+++|+||+|+... ...+.+.+++.. ..
T Consensus 57 ~~e~f~~~L~~~~~~~~lil~VvD~~d~~~-----s~~~~l~~~l--~~~piilV~NK~DLl~~~~~~~~~~~~l~~-~~ 128 (369)
T 3ec1_A 57 DDDDFLSMLHRIGESKALVVNIVDIFDFNG-----SFIPGLPRFA--ADNPILLVGNKADLLPRSVKYPKLLRWMRR-MA 128 (369)
T ss_dssp --CHHHHHHHHHHHHCCEEEEEEETTCSGG-----GCCSSHHHHC--TTSCEEEEEECGGGSCTTCCHHHHHHHHHH-HH
T ss_pred CHHHHHHHHHHhhccCcEEEEEEECCCCCC-----chhhHHHHHh--CCCCEEEEEEChhcCCCccCHHHHHHHHHH-HH
Confidence 588899999999999999999999998752 2222222221 36899999999999753 334444444320 00
Q ss_pred CCcc---eEEEEeeecCCCCHHHHHHHHHHHH
Q 029517 144 DERV---CMFEAVSGYDGFGIKESVEWLVEVM 172 (192)
Q Consensus 144 ~~~~---~~~~~~Sa~~~~gi~e~~~~i~~~i 172 (192)
...+ ..++.+||++|.|++++++.+.+..
T Consensus 129 ~~~g~~~~~v~~iSA~~g~gi~~L~~~I~~~~ 160 (369)
T 3ec1_A 129 EELGLCPVDVCLVSAAKGIGMAKVMEAINRYR 160 (369)
T ss_dssp HTTTCCCSEEEECBTTTTBTHHHHHHHHHHHH
T ss_pred HHcCCCcccEEEEECCCCCCHHHHHHHHHhhc
Confidence 1223 3789999999999999999987654
No 210
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=98.90 E-value=1.5e-10 Score=93.80 Aligned_cols=108 Identities=11% Similarity=0.159 Sum_probs=47.5
Q ss_pred CEEEEEEeCCCCcccH-------HH-------HHHh-----------hhcCCE--EEEEEeCCCcccHHHHH-HHHHHHH
Q 029517 55 NSKLVFWDLGGQPGLR-------SI-------WEKY-----------YEEAHA--VVFVIDAACPSRFEDSK-TALEKVL 106 (192)
Q Consensus 55 ~~~~~i~D~~G~~~~~-------~~-------~~~~-----------~~~~d~--ii~v~D~~~~~s~~~~~-~~~~~i~ 106 (192)
...+.+||++|...+. .. ...+ +.++++ ++++.+++. .++.... .|+..+.
T Consensus 87 ~~~Ltv~Dt~g~~~~~~~~~~~~~i~~~i~~~~~~~l~qr~~IaRal~~d~~~~vlL~ldePt~-~~L~~~d~~~lk~L~ 165 (418)
T 2qag_C 87 QLLLTIVDTPGFGDAVDNSNCWQPVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSG-HGLKPLDIEFMKRLH 165 (418)
T ss_dssp CEEEEEEECC-----------CHHHHHHHHHHHHHHTTTSCC-CCCCCCCC-CCEEEEECCC-C-CSCCHHHHHHHHHHT
T ss_pred ccceeeeechhhhhhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCeeEEEEEecCcc-cCCCHHHHHHHHHHh
Confidence 3579999999976531 11 1122 233444 444444431 2343333 4655553
Q ss_pred hCCCCCCCcEEEEEeCCCCCCCCCH----HHHHhHcCccccCCcceEEEEeeecCCCCHHHHHHHHHHHHH
Q 029517 107 RNEDLQGAPLLILANKQDLPDAVSA----DELARYLDLKKLDERVCMFEAVSGYDGFGIKESVEWLVEVME 173 (192)
Q Consensus 107 ~~~~~~~~piiiv~nK~Dl~~~~~~----~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~e~~~~i~~~i~ 173 (192)
.+.|+++|+||+|+...... +.+.+.+. ..+++++++||+++.++.++|..+.+.++
T Consensus 166 -----~~v~iIlVinK~Dll~~~ev~~~k~~i~~~~~-----~~~i~~~~~sa~~~~~v~~~~~~l~~~iP 226 (418)
T 2qag_C 166 -----EKVNIIPLIAKADTLTPEECQQFKKQIMKEIQ-----EHKIKIYEFPETDDEEENKLVKKIKDRLP 226 (418)
T ss_dssp -----TTSEEEEEEESTTSSCHHHHHHHHHHHHHHHH-----HHTCCCCCCC-----------------CC
T ss_pred -----ccCcEEEEEEcccCccHHHHHHHHHHHHHHHH-----HcCCeEEeCCCCCCcCHHHHHHHHHhhCC
Confidence 36899999999998642111 23334443 45788999999999999999988877554
No 211
>3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A
Probab=98.69 E-value=3.8e-08 Score=84.93 Aligned_cols=111 Identities=22% Similarity=0.148 Sum_probs=70.9
Q ss_pred EEEEEEeCCCCcc-------------cHHHHHHhh-hcCCEEEEEEeCCCcccHHHHHHHHHHHHhCCCCCCCcEEEEEe
Q 029517 56 SKLVFWDLGGQPG-------------LRSIWEKYY-EEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILAN 121 (192)
Q Consensus 56 ~~~~i~D~~G~~~-------------~~~~~~~~~-~~~d~ii~v~D~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~n 121 (192)
..+.++||||-.. .......|+ +.+|++++|+|++....-.....++..+.. .+.|+++|+|
T Consensus 150 ~qL~LVDTPGi~~~~~~~qp~di~~~i~~lv~~yi~~~aDlIL~VVDAs~~~~~~d~l~ll~~L~~----~g~pvIlVlN 225 (772)
T 3zvr_A 150 LNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALKIAKEVDP----QGQRTIGVIT 225 (772)
T ss_dssp CSEEEEECCCCCCCCSSCCCCHHHHHHHHHHHHHHTSTTEEEEEEEETTSCSSSCHHHHHHHHHCT----TCSSEEEEEE
T ss_pred CceEEEECCCcccCCCCCCcHHHHHHHHHHHHHHHhcCCcEEEEEEcCCCCcchhHHHHHHHHHHh----cCCCEEEEEe
Confidence 3689999999432 333455565 468999999999865333332233333322 3689999999
Q ss_pred CCCCCCCCC-HHHHHhHcCccccCCcceEEEEeeecCCCCHHHHHHHHHHH
Q 029517 122 KQDLPDAVS-ADELARYLDLKKLDERVCMFEAVSGYDGFGIKESVEWLVEV 171 (192)
Q Consensus 122 K~Dl~~~~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~e~~~~i~~~ 171 (192)
|+|+..... ...+.. -..........+++.+||++|.|++++++++.+.
T Consensus 226 KiDlv~~~~~~~~il~-~~~~~l~lg~~~VV~iSA~~G~GvdeL~eaI~~e 275 (772)
T 3zvr_A 226 KLDLMDEGTDARDVLE-NKLLPLRRGYIGVVNRSQKDIDGKKDITAALAAE 275 (772)
T ss_dssp CTTSSCTTCCSHHHHT-TCSSCCSSCEEECCCCCCEESSSSEEHHHHHHHH
T ss_pred CcccCCcchhhHHHHH-HHhhhhhccCCceEEecccccccchhHHHHHHHH
Confidence 999975322 122222 1100011124578889999999999999998863
No 212
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=98.60 E-value=1.1e-10 Score=86.76 Aligned_cols=59 Identities=19% Similarity=0.155 Sum_probs=44.7
Q ss_pred CCcEEEEEeCCCCCCC--CCHHHHHhHcCccccCCcceEEEEeeecCCCCHHHHHHHHHHHHHh
Q 029517 113 GAPLLILANKQDLPDA--VSADELARYLDLKKLDERVCMFEAVSGYDGFGIKESVEWLVEVMER 174 (192)
Q Consensus 113 ~~piiiv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~e~~~~i~~~i~~ 174 (192)
..|.++|+||+|+.+. ...+++.+.+... ..+.+++++||++|.|++++|++|.+.+..
T Consensus 164 ~~~~iiv~NK~Dl~~~~~~~~~~~~~~~~~~---~~~~~~~~~Sa~~g~gv~~l~~~l~~~~~~ 224 (226)
T 2hf9_A 164 KTADLIVINKIDLADAVGADIKKMENDAKRI---NPDAEVVLLSLKTMEGFDKVLEFIEKSVKE 224 (226)
T ss_dssp TTCSEEEEECGGGHHHHTCCHHHHHHHHHHH---CTTSEEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred hcCCEEEEeccccCchhHHHHHHHHHHHHHh---CCCCeEEEEEecCCCCHHHHHHHHHHHHHh
Confidence 3678999999998652 4556665555410 235689999999999999999999887754
No 213
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=98.53 E-value=1.3e-08 Score=77.68 Aligned_cols=93 Identities=14% Similarity=0.098 Sum_probs=61.5
Q ss_pred CCCCc-ccHHHHHHhhhcCCEEEEEEeCCCcccHHHHHHHHHHHHhCCCCCCCcEEEEEeCCCCCCCCCHHHHHhHcCcc
Q 029517 63 LGGQP-GLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAVSADELARYLDLK 141 (192)
Q Consensus 63 ~~G~~-~~~~~~~~~~~~~d~ii~v~D~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~ 141 (192)
.|||. +........+.++|+++.|+|+.++.+.... .+. + . ++|.++|+||+|+.+....+.+.+++.
T Consensus 4 ~PGhm~ka~~~~~~~l~~~D~vl~VvDar~P~~~~~~--~l~-l-----l-~k~~iivlNK~DL~~~~~~~~~~~~~~-- 72 (262)
T 3cnl_A 4 YPGHIEKAKRQIKDLLRLVNTVVEVRDARAPFATSAY--GVD-F-----S-RKETIILLNKVDIADEKTTKKWVEFFK-- 72 (262)
T ss_dssp -----CCTTHHHHHHHTTCSEEEEEEETTSTTTTSCT--TSC-C-----T-TSEEEEEEECGGGSCHHHHHHHHHHHH--
T ss_pred CchHHHHHHHHHHHHHhhCCEEEEEeeCCCCCcCcCh--HHH-h-----c-CCCcEEEEECccCCCHHHHHHHHHHHH--
Confidence 46765 3445667788999999999999987554321 111 1 1 689999999999975322233444443
Q ss_pred ccCCcceEEEEeeecCCCCHHHHHHHHHH
Q 029517 142 KLDERVCMFEAVSGYDGFGIKESVEWLVE 170 (192)
Q Consensus 142 ~~~~~~~~~~~~Sa~~~~gi~e~~~~i~~ 170 (192)
..++++ .+||+++.|++++++++.+
T Consensus 73 ---~~g~~v-~iSa~~~~gi~~L~~~l~~ 97 (262)
T 3cnl_A 73 ---KQGKRV-ITTHKGEPRKVLLKKLSFD 97 (262)
T ss_dssp ---HTTCCE-EECCTTSCHHHHHHHHCCC
T ss_pred ---HcCCeE-EEECCCCcCHHHHHHHHHH
Confidence 235567 8999999999999887654
No 214
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=98.23 E-value=2.4e-05 Score=62.81 Aligned_cols=73 Identities=19% Similarity=0.220 Sum_probs=48.7
Q ss_pred ccccHHHHHHHHhhhhccCCCCCCCCCCCCcceEEEEEEe---------------cCEEEEEEeCCCCc-------ccHH
Q 029517 14 TKTEFHTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEV---------------SNSKLVFWDLGGQP-------GLRS 71 (192)
Q Consensus 14 kst~~~~l~~~~~~~~~~~~~~~~~~~~~T~g~~~~~~~~---------------~~~~~~i~D~~G~~-------~~~~ 71 (192)
|||+||+|.+... ..+.+++.....|+.|.-. +.. -...+.+||+||.. .+..
T Consensus 33 KSTL~n~Ltg~~~---a~~~~~p~tTi~p~~G~v~--v~~~r~~~l~~~~~~~~~v~~~i~lvD~pGl~~~~s~~e~L~~ 107 (392)
T 1ni3_A 33 KSTFFRAITKSVL---GNPANYPYATIDPEEAKVA--VPDERFDWLCEAYKPKSRVPAFLTVFDIAGLTKGASTGVGLGN 107 (392)
T ss_dssp HHHHHHHHHHSTT---TSTTCCSSCCCCTTEEEEE--ECCHHHHHHHHHHCCSEEECEEEEEECTGGGCCCCCSSSSSCH
T ss_pred HHHHHHHHHCCCc---ccccCCCceeecceeeeee--eCCcchhhhhhhcccccccCcceEEEeccccccCCcHHHHHHH
Confidence 8888888887432 1444666666677766421 111 02468999999932 2444
Q ss_pred HHHHhhhcCCEEEEEEeCCC
Q 029517 72 IWEKYYEEAHAVVFVIDAAC 91 (192)
Q Consensus 72 ~~~~~~~~~d~ii~v~D~~~ 91 (192)
.+..+++.+|++++|+|+.+
T Consensus 108 ~fl~~ir~~d~il~Vvd~~~ 127 (392)
T 1ni3_A 108 AFLSHVRAVDAIYQVVRAFD 127 (392)
T ss_dssp HHHHHHTTCSEEEEEEECCC
T ss_pred HHHHHHHHHHHHHHHHhccc
Confidence 56667899999999999864
No 215
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=98.17 E-value=5.3e-06 Score=65.41 Aligned_cols=108 Identities=13% Similarity=0.106 Sum_probs=64.0
Q ss_pred cCEEEEEEeCCCCcccHHHHHHhhhcCCEEEEEEeCCCcccHHHHHHHHHHHHhCCCCCCCcEEEEEeCCCCCCCCC---
Q 029517 54 SNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAVS--- 130 (192)
Q Consensus 54 ~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ii~v~D~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~~~~--- 130 (192)
.+..+.++||+|...-.. .....+|.+++|+|+...+..+.+...+ ...|.++++||+|+.....
T Consensus 146 ~~~~~iliDT~Gi~~~~~---~v~~~~d~vl~v~d~~~~~~~~~i~~~i---------~~~~~ivvlNK~Dl~~~~~~s~ 213 (337)
T 2qm8_A 146 AGFDVILVETVGVGQSET---AVADLTDFFLVLMLPGAGDELQGIKKGI---------FELADMIAVNKADDGDGERRAS 213 (337)
T ss_dssp TTCCEEEEEECSSSSCHH---HHHTTSSEEEEEECSCC------CCTTH---------HHHCSEEEEECCSTTCCHHHHH
T ss_pred CCCCEEEEECCCCCcchh---hHHhhCCEEEEEEcCCCcccHHHHHHHH---------hccccEEEEEchhccCchhHHH
Confidence 467899999999754322 2347899999999986543221111111 1245677889999753211
Q ss_pred --HHHHHhHcCccc-c-CCcceEEEEeeecCCCCHHHHHHHHHHHHH
Q 029517 131 --ADELARYLDLKK-L-DERVCMFEAVSGYDGFGIKESVEWLVEVME 173 (192)
Q Consensus 131 --~~~~~~~~~~~~-~-~~~~~~~~~~Sa~~~~gi~e~~~~i~~~i~ 173 (192)
.+.+...+.+.. . .....+++.+||+++.|++++++.|.+...
T Consensus 214 ~~~~~l~~a~~l~~~~~~~~~~~vl~~Sal~g~gi~~L~~~I~~~~~ 260 (337)
T 2qm8_A 214 AAASEYRAALHILTPPSATWTPPVVTISGLHGKGLDSLWSRIEDHRS 260 (337)
T ss_dssp HHHHHHHHHHTTBCCSBTTBCCCEEEEBTTTTBSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccccccCCCCCEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 112222121100 0 001346888999999999999999988654
No 216
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=98.17 E-value=5.3e-07 Score=70.14 Aligned_cols=84 Identities=17% Similarity=0.038 Sum_probs=57.6
Q ss_pred HhhhcCCEEEEEEeCCCcc-cHHHHHHHHHHHHhCCCCCCCcEEEEEeCCCCCCCCC----HHHHHhHcCccccCCcceE
Q 029517 75 KYYEEAHAVVFVIDAACPS-RFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAVS----ADELARYLDLKKLDERVCM 149 (192)
Q Consensus 75 ~~~~~~d~ii~v~D~~~~~-s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~~~~----~~~~~~~~~~~~~~~~~~~ 149 (192)
..+.++|.+++|+|+.++. +...+..++.... . .++|.++|+||+|+.+... .+++.+... ..+++
T Consensus 82 ~~~anvD~v~~V~~~~~p~~~~~~i~r~L~~~~-~---~~~~~vivlnK~DL~~~~~~~~~~~~~~~~y~-----~~g~~ 152 (307)
T 1t9h_A 82 PPICNVDQAVLVFSAVQPSFSTALLDRFLVLVE-A---NDIQPIICITKMDLIEDQDTEDTIQAYAEDYR-----NIGYD 152 (307)
T ss_dssp TTEECCCEEEEEEESTTTTCCHHHHHHHHHHHH-T---TTCEEEEEEECGGGCCCHHHHHHHHHHHHHHH-----HHTCC
T ss_pred HHHHhCCEEEEEEeCCCCCCCHHHHHHHHHHHH-H---CCCCEEEEEECCccCchhhhHHHHHHHHHHHH-----hCCCe
Confidence 4678999999999998553 4444444443322 2 4789999999999976422 233333332 33678
Q ss_pred EEEeeecCCCCHHHHHHH
Q 029517 150 FEAVSGYDGFGIKESVEW 167 (192)
Q Consensus 150 ~~~~Sa~~~~gi~e~~~~ 167 (192)
++.+||.++.|++++++.
T Consensus 153 v~~~sa~~~~g~~~L~~~ 170 (307)
T 1t9h_A 153 VYLTSSKDQDSLADIIPH 170 (307)
T ss_dssp EEECCHHHHTTCTTTGGG
T ss_pred EEEEecCCCCCHHHHHhh
Confidence 999999999998877543
No 217
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=98.14 E-value=2.1e-06 Score=68.92 Aligned_cols=74 Identities=16% Similarity=0.107 Sum_probs=37.2
Q ss_pred hccccHHHHHHHHhhhhccCCCCCCCCCCCCcceEEEEEEec-----------------CEEEEEEeCCCCcccHH----
Q 029517 13 FTKTEFHTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVS-----------------NSKLVFWDLGGQPGLRS---- 71 (192)
Q Consensus 13 ~kst~~~~l~~~~~~~~~~~~~~~~~~~~~T~g~~~~~~~~~-----------------~~~~~i~D~~G~~~~~~---- 71 (192)
=|||+||+|.+.-. .+++++..+..|+.|. +... ...+++|||||..+...
T Consensus 34 GKSTL~n~Ltg~~~----~~~~~p~tTi~p~~g~----v~v~~~r~~~l~~~~~p~~~~~~~i~lvDtpGl~~~as~~~g 105 (396)
T 2ohf_A 34 GKSTFFNVLTNSQA----SAENFPFCTIDPNESR----VPVPDERFDFLCQYHKPASKIPAFLNVVDIAGLVKGAHNGQG 105 (396)
T ss_dssp SHHHHHHHHHC-----------------CCSEEE----EECCCHHHHHHHHHHCCSEEECCEEEEEECCC----------
T ss_pred CHHHHHHHHHCCCc----cccCCCccccCceeEE----EEECCccceeeccccCcccccccccEEEECCCcccccchhhH
Confidence 37888888875432 3334444444444442 3221 34699999999876443
Q ss_pred ---HHHHhhhcCCEEEEEEeCCCccc
Q 029517 72 ---IWEKYYEEAHAVVFVIDAACPSR 94 (192)
Q Consensus 72 ---~~~~~~~~~d~ii~v~D~~~~~s 94 (192)
.+..+++.+|++++|+|+++..+
T Consensus 106 lg~~~l~~ir~aD~Il~VvD~~~~~~ 131 (396)
T 2ohf_A 106 LGNAFLSHISACDGIFHLTRAFEDDD 131 (396)
T ss_dssp -CCHHHHHHHTSSSEEEEEEC-----
T ss_pred HHHHHHHHHHhcCeEEEEEecCCCcc
Confidence 45678899999999999975443
No 218
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=98.08 E-value=5.6e-06 Score=65.66 Aligned_cols=86 Identities=21% Similarity=0.062 Sum_probs=54.7
Q ss_pred hhcCCEEEEEEeCCCcccHHHHHHHHHHHHhCCCCCCCcEEEEEeCCCCCCCCCHHHHHhHcCccccCCcceEEEEeeec
Q 029517 77 YEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAVSADELARYLDLKKLDERVCMFEAVSGY 156 (192)
Q Consensus 77 ~~~~d~ii~v~D~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 156 (192)
..++|.+++|.......+...+..++..... .++|.++|+||+|+......+.+.++.. .+...+++++.+||+
T Consensus 128 ~anvD~v~iv~a~~P~~~~~~i~r~L~~a~~----~~~~~iivlNK~DL~~~~~~~~~~~~~~--~y~~~G~~v~~~Sa~ 201 (358)
T 2rcn_A 128 AANIDQIVIVSAILPELSLNIIDRYLVGCET----LQVEPLIVLNKIDLLDDEGMDFVNEQMD--IYRNIGYRVLMVSSH 201 (358)
T ss_dssp EECCCEEEEEEESTTTCCHHHHHHHHHHHHH----HTCEEEEEEECGGGCCHHHHHHHHHHHH--HHHTTTCCEEECBTT
T ss_pred HhcCCEEEEEEeCCCCCCHHHHHHHHHHHHh----cCCCEEEEEECccCCCchhHHHHHHHHH--HHHhCCCcEEEEecC
Confidence 5789999988665433344544455443322 3688899999999975321111222222 111457789999999
Q ss_pred CCCCHHHHHHHH
Q 029517 157 DGFGIKESVEWL 168 (192)
Q Consensus 157 ~~~gi~e~~~~i 168 (192)
++.|++++...+
T Consensus 202 ~~~gl~~L~~~~ 213 (358)
T 2rcn_A 202 TQDGLKPLEEAL 213 (358)
T ss_dssp TTBTHHHHHHHH
T ss_pred CCcCHHHHHHhc
Confidence 999999987653
No 219
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=97.81 E-value=5.1e-05 Score=62.82 Aligned_cols=110 Identities=15% Similarity=0.132 Sum_probs=63.2
Q ss_pred cCEEEEEEeCCCCccc----HHHHHHh--hhcCCEEEEEEeCCCcccHHHHHHHHHHHHhCCCCCCCcE-EEEEeCCCCC
Q 029517 54 SNSKLVFWDLGGQPGL----RSIWEKY--YEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPL-LILANKQDLP 126 (192)
Q Consensus 54 ~~~~~~i~D~~G~~~~----~~~~~~~--~~~~d~ii~v~D~~~~~s~~~~~~~~~~i~~~~~~~~~pi-iiv~nK~Dl~ 126 (192)
.++.+.|+||||.... ....... ...+|.+++|+|++...... .....+.. ..|+ .+|+||+|..
T Consensus 182 ~~~DvvIIDTpG~~~~~~~l~~el~~~~~~i~pd~vllVvDa~~g~~~~---~~a~~~~~-----~~~i~gvVlNK~D~~ 253 (504)
T 2j37_W 182 ENFEIIIVDTSGRHKQEDSLFEEMLQVANAIQPDNIVYVMDASIGQACE---AQAKAFKD-----KVDVASVIVTKLDGH 253 (504)
T ss_dssp TTCCEEEEEECCCCTTCHHHHHHHHHHHHHHCCSEEEEEEETTCCTTHH---HHHHHHHH-----HHCCCCEEEECTTSC
T ss_pred CCCcEEEEeCCCCcccchhHHHHHHHHHhhhcCceEEEEEeccccccHH---HHHHHHHh-----hcCceEEEEeCCccc
Confidence 4678999999997532 1111111 22789999999998654322 12222221 1564 8899999987
Q ss_pred CCCCH-HHHHhHcCcc--------ccCC--cceEEEEeeecCCCC-HHHHHHHHHHH
Q 029517 127 DAVSA-DELARYLDLK--------KLDE--RVCMFEAVSGYDGFG-IKESVEWLVEV 171 (192)
Q Consensus 127 ~~~~~-~~~~~~~~~~--------~~~~--~~~~~~~~Sa~~~~g-i~e~~~~i~~~ 171 (192)
..... -.+....... .+.. ...+...+|+..|.| +.++++++.+.
T Consensus 254 ~~~g~~l~~~~~~g~PI~fig~ge~~~dl~~f~~~~~vsal~G~Gdi~~Lie~i~e~ 310 (504)
T 2j37_W 254 AKGGGALSAVAATKSPIIFIGTGEHIDDFEPFKTQPFISKLLGMGDIEGLIDKVNEL 310 (504)
T ss_dssp CCCTHHHHHHHHHCCCEEEEECSSSTTCEECCTHHHHHHCCCTTTTTTTTHHHHTTT
T ss_pred cchHHHHHHHHHhCCCeEEeccccchhhhhccCcceeeehhcCCCcHHHHHHHHHHH
Confidence 53321 1222222110 0000 011234579999999 99999998765
No 220
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=97.40 E-value=4.1e-06 Score=66.89 Aligned_cols=113 Identities=11% Similarity=0.064 Sum_probs=56.9
Q ss_pred ccccHHHHHHHHhhhhccCCCCCCCCCCCCcceEEEEEEecCEEEEEEeCCCCcccH--------HHHHHhh--hcCCEE
Q 029517 14 TKTEFHTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPGLR--------SIWEKYY--EEAHAV 83 (192)
Q Consensus 14 kst~~~~l~~~~~~~~~~~~~~~~~~~~~T~g~~~~~~~~~~~~~~i~D~~G~~~~~--------~~~~~~~--~~~d~i 83 (192)
|||++|+|+++........ ........|.+.....+. -.+.++||||..... .....++ +..+.+
T Consensus 175 KStliN~L~~~~~~~~~~~--~~~~~~gtT~~~~~~~~~---~~~~liDtPG~~~~~~~~~~l~~~~l~~~~~~~~i~~~ 249 (369)
T 3ec1_A 175 KSTFINRIIEEATGKGNVI--TTSYFPGTTLDMIEIPLE---SGATLYDTPGIINHHQMAHFVDARDLKIITPKREIHPR 249 (369)
T ss_dssp HHHHHHHHHHHHHHTTCCC--EEEECTTSSCEEEEEECS---TTCEEEECCSCCCCSSGGGGSCTTTHHHHSCSSCCCCE
T ss_pred hHHHHHHHHhhccCCccce--eecCCCCeEEeeEEEEeC---CCeEEEeCCCcCcHHHHHHHHhHHHHHHHhcccccCce
Confidence 7999999998853311000 000111123332222221 137999999943211 1122222 678999
Q ss_pred EEEEeCCCcccHHHHHHHHHHHHhCCCCCCCcEEEEEeCCCCCCCCCHHHHHh
Q 029517 84 VFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAVSADELAR 136 (192)
Q Consensus 84 i~v~D~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~ 136 (192)
++++|+....-+..+.. +. .... .+.|+++++||.|.......+.+.+
T Consensus 250 ~~~l~~~~~~~~g~l~~-l~-~l~~---~~~~~~~v~~k~d~~~~~~~~~~~~ 297 (369)
T 3ec1_A 250 VYQLNEGQTLFFGGLAR-LD-YIKG---GRRSFVCYMANELTVHRTKLEKADS 297 (369)
T ss_dssp EEEECTTEEEEETTTEE-EE-EEES---SSEEEEEEECTTSCEEEEEGGGHHH
T ss_pred EEEEcCCceEEECCEEE-EE-EccC---CCceEEEEecCCcccccccHHHHHH
Confidence 99999842210111000 00 1111 4689999999999865333333333
No 221
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=97.30 E-value=6.9e-06 Score=65.53 Aligned_cols=117 Identities=9% Similarity=0.043 Sum_probs=57.6
Q ss_pred hccccHHHHHHHHhhhhccCCCCCCCCCCCCcceEEEEEEecCEEEEEEeCCCCccc--------HHHHHHh--hhcCCE
Q 029517 13 FTKTEFHTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPGL--------RSIWEKY--YEEAHA 82 (192)
Q Consensus 13 ~kst~~~~l~~~~~~~~~~~~~~~~~~~~~T~g~~~~~~~~~~~~~~i~D~~G~~~~--------~~~~~~~--~~~~d~ 82 (192)
=|||++|+|+++......+.. ........|.......+.. .+.++||||.... ......+ .+..+.
T Consensus 172 GKStliN~L~~~~~~~~~~~~-~~~~~~gtT~~~~~~~~~~---~~~liDtPG~~~~~~~~~~l~~~~l~~~~~~~~i~~ 247 (368)
T 3h2y_A 172 GKSTFINRMIKEFSDETENVI-TTSHFPGTTLDLIDIPLDE---ESSLYDTPGIINHHQMAHYVGKQSLKLITPTKEIKP 247 (368)
T ss_dssp SHHHHHHHHHHHHTTSCSSCC-EEECCC----CEEEEESSS---SCEEEECCCBCCTTSGGGGSCHHHHHHHSCSSCCCC
T ss_pred ChhHHHHHHHhhhccccccce-ecCCCCCeecceEEEEecC---CeEEEeCCCcCcHHHHHHHhhHHHHHHhccccccCc
Confidence 389999999998643211100 0001111222222222211 3899999994321 1122222 256788
Q ss_pred EEEEEeCCCcccHHHHHHHHHHHHhCCCCCCCcEEEEEeCCCCCCCCCHHHHHhHc
Q 029517 83 VVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAVSADELARYL 138 (192)
Q Consensus 83 ii~v~D~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~ 138 (192)
+++++|+....-+..+.. +. .... .+.|+++++||+|.......+.+.+.+
T Consensus 248 ~~~~l~~~~~~~~g~l~~-~d-~l~~---~~~~~~~v~nk~d~~~~~~~~~~~~~~ 298 (368)
T 3h2y_A 248 MVFQLNEEQTLFFSGLAR-FD-YVSG---GRRAFTCHFSNRLTIHRTKLEKADELY 298 (368)
T ss_dssp EEEEECTTEEEEETTTEE-EE-EEES---SSEEEEEEECTTSCEEEEEHHHHHHHH
T ss_pred eEEEEcCCCEEEEcceEE-EE-EecC---CCceEEEEecCccccccccHHHHHHHH
Confidence 999998742211111000 00 1111 368999999999987644444444443
No 222
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=96.80 E-value=0.0011 Score=53.60 Aligned_cols=41 Identities=12% Similarity=0.097 Sum_probs=23.4
Q ss_pred CCCcEEEEEeCCCCCCCCCHHHHHhHcCc--cccCCcceEEEEeee
Q 029517 112 QGAPLLILANKQDLPDAVSADELARYLDL--KKLDERVCMFEAVSG 155 (192)
Q Consensus 112 ~~~piiiv~nK~Dl~~~~~~~~~~~~~~~--~~~~~~~~~~~~~Sa 155 (192)
.+.|+++|.||+|... .+++..+... ..+...+++++.+|.
T Consensus 175 ~~~~vI~Vi~KtD~Lt---~~E~~~l~~~I~~~L~~~gi~I~~is~ 217 (427)
T 2qag_B 175 SKVNIIPIIAKADAIS---KSELTKFKIKITSELVSNGVQIYQFPT 217 (427)
T ss_dssp SCSEEEEEESCGGGSC---HHHHHHHHHHHHHHHBTTBCCCCCCC-
T ss_pred hCCCEEEEEcchhccc---hHHHHHHHHHHHHHHHHcCCcEEecCC
Confidence 4789999999999764 3333322220 012245666666664
No 223
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=95.91 E-value=0.023 Score=46.28 Aligned_cols=94 Identities=13% Similarity=0.077 Sum_probs=52.5
Q ss_pred CEEEEEEeCCCCcccHH----HHH--HhhhcCCEEEEEEeCCCcccHHHHHHHHHHHHhCCCCCCCcEEEEEeCCCCCCC
Q 029517 55 NSKLVFWDLGGQPGLRS----IWE--KYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDA 128 (192)
Q Consensus 55 ~~~~~i~D~~G~~~~~~----~~~--~~~~~~d~ii~v~D~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~~ 128 (192)
++.+.|+||+|...... ... .....+|.+++|+|++....-.. ....+.+. -.+..+|+||.|....
T Consensus 182 ~~DvVIIDTaGrl~~d~~lm~el~~i~~~~~pd~vlLVvDA~~gq~a~~---~a~~f~~~----~~i~gVIlTKlD~~~~ 254 (443)
T 3dm5_A 182 GVDIIIVDTAGRHKEDKALIEEMKQISNVIHPHEVILVIDGTIGQQAYN---QALAFKEA----TPIGSIIVTKLDGSAK 254 (443)
T ss_dssp TCSEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGGGGHHH---HHHHHHHS----CTTEEEEEECCSSCSS
T ss_pred CCCEEEEECCCcccchHHHHHHHHHHHHhhcCceEEEEEeCCCchhHHH---HHHHHHhh----CCCeEEEEECCCCccc
Confidence 47899999999542211 111 11235799999999976533222 22333322 2355689999998642
Q ss_pred CCHHHHHhHcCccccCCcceEEEEeeecCCCCHHHH
Q 029517 129 VSADELARYLDLKKLDERVCMFEAVSGYDGFGIKES 164 (192)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~e~ 164 (192)
...+..... ..+.++..++. |++++++
T Consensus 255 --gG~~ls~~~-----~~g~PI~fig~--Ge~vddL 281 (443)
T 3dm5_A 255 --GGGALSAVA-----ATGAPIKFIGT--GEKIDDI 281 (443)
T ss_dssp --HHHHHHHHH-----TTCCCEEEEEC--SSSTTCE
T ss_pred --ccHHHHHHH-----HHCCCEEEEEc--CCChHHh
Confidence 122233222 23455555554 7766554
No 224
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=95.60 E-value=0.039 Score=41.84 Aligned_cols=42 Identities=14% Similarity=0.199 Sum_probs=25.9
Q ss_pred CCEEEEEEeCC-CcccHHHHHHHHHHHHhCCCCCCCcEEEEEeCCCCCC
Q 029517 80 AHAVVFVIDAA-CPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPD 127 (192)
Q Consensus 80 ~d~ii~v~D~~-~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~ 127 (192)
+.+.++++|.. .+-+... ...+..+. . . .++++|+||+|...
T Consensus 112 al~~lllldep~~gL~~lD-~~~l~~L~-~---~-~~vI~Vi~K~D~lt 154 (270)
T 3sop_A 112 VHCCLYFISPTGHSLRPLD-LEFMKHLS-K---V-VNIIPVIAKADTMT 154 (270)
T ss_dssp CCEEEEEECCCSSSCCHHH-HHHHHHHH-T---T-SEEEEEETTGGGSC
T ss_pred eeeeeEEEecCCCcCCHHH-HHHHHHHH-h---c-CcEEEEEeccccCC
Confidence 57888999864 2222222 23333332 2 2 89999999999764
No 225
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=95.45 E-value=0.02 Score=46.51 Aligned_cols=66 Identities=12% Similarity=0.165 Sum_probs=40.5
Q ss_pred cCEEEEEEeCCCCcccHHHH----HHh--hhcCCEEEEEEeCCCcccHHHHHHHHHHHHhCCCCCCC-c-EEEEEeCCCC
Q 029517 54 SNSKLVFWDLGGQPGLRSIW----EKY--YEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGA-P-LLILANKQDL 125 (192)
Q Consensus 54 ~~~~~~i~D~~G~~~~~~~~----~~~--~~~~d~ii~v~D~~~~~s~~~~~~~~~~i~~~~~~~~~-p-iiiv~nK~Dl 125 (192)
..+.+.|+||||........ ... +..+|.+++|+|++.... .......+. ... | ..+|+||.|.
T Consensus 179 ~~~D~vIIDT~G~~~~~~~l~~~l~~i~~~~~~d~vllVvda~~g~~---~~~~~~~~~-----~~~~~i~gvVlnK~D~ 250 (432)
T 2v3c_C 179 KKADVLIIDTAGRHKEEKGLLEEMKQIKEITNPDEIILVIDGTIGQQ---AGIQAKAFK-----EAVGEIGSIIVTKLDG 250 (432)
T ss_dssp SSCSEEEEECCCSCSSHHHHHHHHHHTTSSSCCSEEEEEEEGGGGGG---HHHHHHHHH-----TTSCSCEEEEEECSSS
T ss_pred hCCCEEEEcCCCCccccHHHHHHHHHHHHHhcCcceeEEeeccccHH---HHHHHHHHh-----hcccCCeEEEEeCCCC
Confidence 45688999999976432211 111 125899999999875532 222222222 124 5 7889999998
Q ss_pred CC
Q 029517 126 PD 127 (192)
Q Consensus 126 ~~ 127 (192)
..
T Consensus 251 ~~ 252 (432)
T 2v3c_C 251 SA 252 (432)
T ss_dssp CS
T ss_pred cc
Confidence 64
No 226
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=95.36 E-value=0.034 Score=44.88 Aligned_cols=113 Identities=17% Similarity=0.177 Sum_probs=62.1
Q ss_pred EEEEEeCCCCcc----cHHHHHH-hhhcCCEEEEEEeCCCcccHHHHHHHHHHHHhCCCCCCCcEEEEEeCCCCC-----
Q 029517 57 KLVFWDLGGQPG----LRSIWEK-YYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLP----- 126 (192)
Q Consensus 57 ~~~i~D~~G~~~----~~~~~~~-~~~~~d~ii~v~D~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~----- 126 (192)
.+.+||++|... ....... -+...+..+. ++..... -++ ..+...+.. .+.|+++|.||.|+.
T Consensus 121 ~ltv~D~~g~~~~~~~~~~~L~~~~L~~~~~~~~-lS~G~~~-kqr--v~la~aL~~---~~~p~~lV~tkpdlllLDEP 193 (413)
T 1tq4_A 121 NVVFWDLPGIGSTNFPPDTYLEKMKFYEYDFFII-ISATRFK-KND--IDIAKAISM---MKKEFYFVRTKVDSDITNEA 193 (413)
T ss_dssp TEEEEECCCGGGSSCCHHHHHHHTTGGGCSEEEE-EESSCCC-HHH--HHHHHHHHH---TTCEEEEEECCHHHHHHHHH
T ss_pred CeeehHhhcccchHHHHHHHHHHcCCCccCCeEE-eCCCCcc-HHH--HHHHHHHHh---cCCCeEEEEecCcccccCcc
Confidence 588999999431 1222221 2334455554 6664211 222 222222222 368999999999863
Q ss_pred ----CCCCHHHHHhHcCccc------cCCcceEEEEeee--cCCCCHHHHHHHHHHHHHhcc
Q 029517 127 ----DAVSADELARYLDLKK------LDERVCMFEAVSG--YDGFGIKESVEWLVEVMERSK 176 (192)
Q Consensus 127 ----~~~~~~~~~~~~~~~~------~~~~~~~~~~~Sa--~~~~gi~e~~~~i~~~i~~~~ 176 (192)
+....+++.+.+.... .......++.+|+ ..+.|++++.+.+.+.+....
T Consensus 194 tsgLD~~~~~~l~~~l~~l~~~~l~~~g~~~~~iiliSsh~l~~~~~e~L~d~I~~~Lpeg~ 255 (413)
T 1tq4_A 194 DGEPQTFDKEKVLQDIRLNCVNTFRENGIAEPPIFLLSNKNVCHYDFPVLMDKLISDLPIYK 255 (413)
T ss_dssp TTCCTTCCHHHHHHHHHHHHHHHHHHTTCSSCCEEECCTTCTTSTTHHHHHHHHHHHSCGGG
T ss_pred cccCCHHHHHHHHHHHHHHHHHHHHhcCCCCCcEEEEecCcCCccCHHHHHHHHHHhCccch
Confidence 1233444433332100 0011236788999 667789999999988776554
No 227
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=95.21 E-value=0.048 Score=41.93 Aligned_cols=94 Identities=17% Similarity=0.161 Sum_probs=54.1
Q ss_pred cCEEEEEEeCCCCcc--cHH-HHH-----HhhhcCCEEEEEEeCCCcccHHHHHHHHHHHHhCCCCCCCc-EEEEEeCCC
Q 029517 54 SNSKLVFWDLGGQPG--LRS-IWE-----KYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAP-LLILANKQD 124 (192)
Q Consensus 54 ~~~~~~i~D~~G~~~--~~~-~~~-----~~~~~~d~ii~v~D~~~~~s~~~~~~~~~~i~~~~~~~~~p-iiiv~nK~D 124 (192)
..+.+.|+||||... ... ... .....+|.+++|+|+.... ........+.. ..| ..+|.||.|
T Consensus 179 ~~~D~ViIDTpg~~~~~~~~~l~~el~~i~~~~~~d~vllVvda~~g~---~~~~~~~~~~~-----~~~i~gvVlnk~D 250 (297)
T 1j8m_F 179 EKMEIIIVDTAGRHGYGEEAALLEEMKNIYEAIKPDEVTLVIDASIGQ---KAYDLASKFNQ-----ASKIGTIIITKMD 250 (297)
T ss_dssp TTCSEEEEECCCSCCTTCHHHHHHHHHHHHHHHCCSEEEEEEEGGGGG---GHHHHHHHHHH-----TCTTEEEEEECGG
T ss_pred CCCCEEEEeCCCCcccccHHHHHHHHHHHHHHhcCCEEEEEeeCCchH---HHHHHHHHHHh-----hCCCCEEEEeCCC
Confidence 467899999999776 322 111 1245799999999986432 22222222222 245 678899999
Q ss_pred CCCCCCHHHHHhHcCccccCCcceEEEEeeecCCCCHHHH
Q 029517 125 LPDAVSADELARYLDLKKLDERVCMFEAVSGYDGFGIKES 164 (192)
Q Consensus 125 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~e~ 164 (192)
... ....+..... ..+.++..++ .|++++++
T Consensus 251 ~~~--~~g~~~~~~~-----~~~~pi~~i~--~Ge~v~dl 281 (297)
T 1j8m_F 251 GTA--KGGGALSAVA-----ATGATIKFIG--TGEKIDEL 281 (297)
T ss_dssp GCT--THHHHHHHHH-----TTTCCEEEEE--CSSSTTCE
T ss_pred CCc--chHHHHHHHH-----HHCcCEEEEe--CCCChhhc
Confidence 753 2233333332 3345555554 57777553
No 228
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=95.21 E-value=0.068 Score=38.06 Aligned_cols=68 Identities=10% Similarity=0.028 Sum_probs=48.7
Q ss_pred CEEEEEEeCCCCcccHHHHHHhhhcCCEEEEEEeCCCcccHHHHHHHHHHHHhCCC-CCCCcEEEEEeCCCCC
Q 029517 55 NSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNED-LQGAPLLILANKQDLP 126 (192)
Q Consensus 55 ~~~~~i~D~~G~~~~~~~~~~~~~~~d~ii~v~D~~~~~s~~~~~~~~~~i~~~~~-~~~~piiiv~nK~Dl~ 126 (192)
.+.+.|+|+|+... ......+..+|.+++++.++... ..+...+..+.+... ..+.++.+|.|+.|..
T Consensus 75 ~yD~viiD~~~~~~--~~~~~~l~~ad~viiv~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~~vv~N~~~~~ 143 (206)
T 4dzz_A 75 DYDFAIVDGAGSLS--VITSAAVMVSDLVIIPVTPSPLD--FSAAGSVVTVLEAQAYSRKVEARFLITRKIEM 143 (206)
T ss_dssp TSSEEEEECCSSSS--HHHHHHHHHCSEEEEEECSCTTT--HHHHHHHHHHHTTSCGGGCCEEEEEECSBCTT
T ss_pred CCCEEEEECCCCCC--HHHHHHHHHCCEEEEEecCCHHH--HHHHHHHHHHHHHHHhCCCCcEEEEEeccCCC
Confidence 47889999999762 34455677899999999986443 666666666655421 2356789999999854
No 229
>3ea0_A ATPase, para family; alpha-beta-alpha sandwich, structural genomics, PSI-2, prote structure initiative; HET: ATP; 2.20A {Chlorobium tepidum}
Probab=94.69 E-value=0.18 Score=36.97 Aligned_cols=81 Identities=14% Similarity=0.173 Sum_probs=58.4
Q ss_pred CEEEEEEeCCCCcccHHHHHHhhhcCCEEEEEEeCCCcccHHHHHHHHHHHHhCCCCCCCcEEEEEeCCCCCCCCCHHHH
Q 029517 55 NSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAVSADEL 134 (192)
Q Consensus 55 ~~~~~i~D~~G~~~~~~~~~~~~~~~d~ii~v~D~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~~~~~~~~ 134 (192)
.+.+.|+|+|+.... .....+..+|.+++++.++ ..+...+...++.+..... ....+-+|.|+.+.......+++
T Consensus 118 ~yD~viiD~p~~~~~--~~~~~l~~ad~viiv~~~~-~~~~~~~~~~~~~l~~~~~-~~~~~~~v~N~~~~~~~~~~~~~ 193 (245)
T 3ea0_A 118 FYDYIIVDFGASIDH--VGVWVLEHLDELCIVTTPS-LQSLRRAGQLLKLCKEFEK-PISRIEIILNRADTNSRITSDEI 193 (245)
T ss_dssp HCSEEEEEEESSCCT--THHHHGGGCSEEEEEECSS-HHHHHHHHHHHHHHHTCSS-CCSCEEEEEESTTSCTTSCHHHH
T ss_pred hCCEEEEeCCCCCch--HHHHHHHHCCEEEEEecCc-HHHHHHHHHHHHHHHHhCC-CccceEEEEecCCCCCCCCHHHH
Confidence 467899999996532 3445678899999999875 5567777777777665421 24568899999997666666777
Q ss_pred HhHcC
Q 029517 135 ARYLD 139 (192)
Q Consensus 135 ~~~~~ 139 (192)
.+.+.
T Consensus 194 ~~~~~ 198 (245)
T 3ea0_A 194 EKVIG 198 (245)
T ss_dssp HHHHT
T ss_pred HHHhC
Confidence 77665
No 230
>3cwq_A Para family chromosome partitioning protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: ADP; 2.47A {Synechocystis SP}
Probab=94.39 E-value=0.097 Score=37.83 Aligned_cols=68 Identities=9% Similarity=0.003 Sum_probs=49.1
Q ss_pred cCEEEEEEeCCCC-cccHHHHHHhhhcCCEEEEEEeCCCcccHHHHHHHHHHHHhCCCCCCCcEEEEEeCCCCCC
Q 029517 54 SNSKLVFWDLGGQ-PGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPD 127 (192)
Q Consensus 54 ~~~~~~i~D~~G~-~~~~~~~~~~~~~~d~ii~v~D~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~ 127 (192)
..+.+.|+|+|+. ... .....+..+|.+|+++.++ ..++..+...++.+.... +.++.+|.|+.|...
T Consensus 66 ~~yD~viiD~p~~~~~~--~~~~~l~~aD~viiv~~~~-~~~~~~~~~~~~~l~~~~---~~~~~vv~N~~~~~~ 134 (209)
T 3cwq_A 66 PKYQNIVIDTQARPEDE--DLEALADGCDLLVIPSTPD-ALALDALMLTIETLQKLG---NNRFRILLTIIPPYP 134 (209)
T ss_dssp GGCSEEEEEEECCCSSS--HHHHHHHTSSEEEEEECSS-HHHHHHHHHHHHHHHHTC---SSSEEEEECSBCCTT
T ss_pred hcCCEEEEeCCCCcCcH--HHHHHHHHCCEEEEEecCC-chhHHHHHHHHHHHHhcc---CCCEEEEEEecCCcc
Confidence 3567899999997 543 2344677899999999875 455666666666665532 467889999998653
No 231
>2ph1_A Nucleotide-binding protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 2.70A {Archaeoglobus fulgidus dsm 4304} PDB: 3kb1_A*
Probab=93.79 E-value=0.37 Score=35.90 Aligned_cols=67 Identities=13% Similarity=0.075 Sum_probs=44.7
Q ss_pred cCEEEEEEeCCCCcccHHHHHHhhhcCCEEEEEEeCCCcccHHHHHHHHHHHHhCCCCCCCcEE-EEEeCCCC
Q 029517 54 SNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLL-ILANKQDL 125 (192)
Q Consensus 54 ~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ii~v~D~~~~~s~~~~~~~~~~i~~~~~~~~~pii-iv~nK~Dl 125 (192)
..+.+.|+|+|+...........+..+|.+|+|..+. ..+...+...++.+... +.+++ +|.|+.|.
T Consensus 127 ~~yD~ViID~pp~~~~~~~~~~~~~~aD~viiv~~~~-~~s~~~~~~~~~~l~~~----~~~~~gvV~N~~~~ 194 (262)
T 2ph1_A 127 GELDHLLIDLPPGTGDAPLTVMQDAKPTGVVVVSTPQ-ELTAVIVEKAINMAEET----NTSVLGLVENMSYF 194 (262)
T ss_dssp CSCSEEEEECCSSSSSHHHHHHHHHCCSEEEEEECSS-SCCHHHHHHHHHHHHTT----TCCEEEEEETTCCE
T ss_pred cCCCEEEEECcCCCchHHHHHHhhccCCeEEEEecCc-cchHHHHHHHHHHHHhC----CCCEEEEEECCCcc
Confidence 4578999999997543222222233689999999876 44566666666665443 46666 89999874
No 232
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=93.66 E-value=0.084 Score=42.82 Aligned_cols=92 Identities=15% Similarity=0.153 Sum_probs=51.8
Q ss_pred CEEEEEEeCCCCcc------cHHHHHHh--hhcCCEEEEEEeCCCcccHHHHHHHHHHHHhCCCCCCCcEEEEEeCCCCC
Q 029517 55 NSKLVFWDLGGQPG------LRSIWEKY--YEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLP 126 (192)
Q Consensus 55 ~~~~~i~D~~G~~~------~~~~~~~~--~~~~d~ii~v~D~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~ 126 (192)
.+.+.|+||||... ........ .-..+.+++|+|+........ ....+.+. -.+..+|+||.|..
T Consensus 179 ~~DvvIIDTaGr~~~~~d~~lm~el~~i~~~~~pd~vlLVlDa~~gq~a~~---~a~~f~~~----~~~~gVIlTKlD~~ 251 (433)
T 3kl4_A 179 KMDIIIVDTAGRHGYGEETKLLEEMKEMYDVLKPDDVILVIDASIGQKAYD---LASRFHQA----SPIGSVIITKMDGT 251 (433)
T ss_dssp TCSEEEEEECCCSSSCCTTHHHHHHHHHHHHHCCSEEEEEEEGGGGGGGHH---HHHHHHHH----CSSEEEEEECGGGC
T ss_pred CCCEEEEECCCCccccCCHHHHHHHHHHHHhhCCcceEEEEeCccchHHHH---HHHHHhcc----cCCcEEEEeccccc
Confidence 56788999999643 11112211 124699999999976533222 22233222 14577899999976
Q ss_pred CCCCHHHHHhHcCccccCCcceEEEEeeecCCCCHH
Q 029517 127 DAVSADELARYLDLKKLDERVCMFEAVSGYDGFGIK 162 (192)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~ 162 (192)
.. ...+..... ..+.|+..++. |++++
T Consensus 252 a~--~G~als~~~-----~~g~Pi~fig~--Ge~v~ 278 (433)
T 3kl4_A 252 AK--GGGALSAVV-----ATGATIKFIGT--GEKID 278 (433)
T ss_dssp SC--HHHHHHHHH-----HHTCEEEEEEC--CSSSS
T ss_pred cc--chHHHHHHH-----HHCCCEEEEEC--CCChH
Confidence 42 222333332 22466666664 77764
No 233
>3k9g_A PF-32 protein; ssgcid, SBRI, decode biostructures, UW, NIH, niaid, borellia burgdorferi, plasmid partition protein, iodide; 2.25A {Borrelia burgdorferi} PDB: 3k9h_A
Probab=93.51 E-value=0.32 Score=36.21 Aligned_cols=65 Identities=9% Similarity=-0.003 Sum_probs=47.5
Q ss_pred CEEEEEEeCCCCcccHHHHHHhhhcCCEEEEEEeCCCcccHHHHHHHHHHHHhCCCCCCCcEEEEEeCCC
Q 029517 55 NSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQD 124 (192)
Q Consensus 55 ~~~~~i~D~~G~~~~~~~~~~~~~~~d~ii~v~D~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~D 124 (192)
.+.+.|+|+|+... ......+..+|.+|+++.++ ..+...+...+..+.... .+.++.+|+|+.+
T Consensus 144 ~yD~viiD~pp~~~--~~~~~~l~~aD~vivv~~~~-~~s~~~~~~~~~~l~~~~--~~~~~~vv~N~~~ 208 (267)
T 3k9g_A 144 KYDYIVIDTNPSLD--VTLKNALLCSDYVIIPMTAE-KWAVESLDLFNFFVRKLN--LFLPIFLIITRFK 208 (267)
T ss_dssp TCSEEEEEECSSCS--HHHHHHHTTCSEEEEEEESC-TTHHHHHHHHHHHHHTTT--CCCCEEEEEEEEC
T ss_pred CCCEEEEECcCCcc--HHHHHHHHHCCeEEEEeCCC-hHHHHHHHHHHHHHHHHh--ccCCEEEEEeccc
Confidence 56789999999753 23445667899999999985 456677766666665543 3567889999994
No 234
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=92.85 E-value=0.017 Score=43.67 Aligned_cols=45 Identities=20% Similarity=0.180 Sum_probs=22.1
Q ss_pred hccccHHHHHHHHhhhhccCCCCCCCCCCCCcceEEEEEEecCEEEEEEeCCCCc
Q 029517 13 FTKTEFHTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQP 67 (192)
Q Consensus 13 ~kst~~~~l~~~~~~~~~~~~~~~~~~~~~T~g~~~~~~~~~~~~~~i~D~~G~~ 67 (192)
=|||++|+|.++.......+++. |.+.. .+.. +..+.+|||||..
T Consensus 111 GKSslin~l~~~~~~~~~~~~g~-------T~~~~--~~~~-~~~~~l~DtpG~~ 155 (262)
T 3cnl_A 111 GKSTIINKLKGKRASSVGAQPGI-------TKGIQ--WFSL-ENGVKILDTPGIL 155 (262)
T ss_dssp SHHHHHHHHHTTCC-----------------CCSC--EEEC-TTSCEEESSCEEC
T ss_pred CHHHHHHHHhcccccccCCCCCC-------ccceE--EEEe-CCCEEEEECCCcc
Confidence 37888888886544322222222 11111 1221 3468999999954
No 235
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=92.74 E-value=0.24 Score=37.78 Aligned_cols=69 Identities=14% Similarity=0.143 Sum_probs=47.2
Q ss_pred CEEEEEEeCCCCcccHHHHHHhhhcCCEEEEEEeCCCcccHHHHHHHHHHHHhCCCCCCCcEE-EEEeCCCC
Q 029517 55 NSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLL-ILANKQDL 125 (192)
Q Consensus 55 ~~~~~i~D~~G~~~~~~~~~~~~~~~d~ii~v~D~~~~~s~~~~~~~~~~i~~~~~~~~~pii-iv~nK~Dl 125 (192)
.+.+.|+|+|+...... ....+..+|.+|+|+.++ ..++..+...+..+.......+.+++ +|.|+.+.
T Consensus 156 ~yD~ViiD~p~~~~~~~-~~~~l~~aD~viiv~~~~-~~s~~~~~~~~~~l~~~~~~~~~~~~gvV~N~~~~ 225 (307)
T 3end_A 156 DTDVVIFDVLGDVVCGG-FAAPLQHADQAVVVTAND-FDSIYAMNRIIAAVQAKSKNYKVRLAGCVANRSRA 225 (307)
T ss_dssp SCSEEEEEECCSSCCGG-GGGGGGTCSEEEEEECSS-HHHHHHHHHHHHHHHTTTTTCCCEEEEEEEESCSC
T ss_pred cCCEEEEeCCCccchHH-HHHHHHHCCEEEEEecCc-HHHHHHHHHHHHHHHHhhhcCCCceEEEEEecCCc
Confidence 57889999988643211 123567899999999875 45567776777766654322456655 89999984
No 236
>1g3q_A MIND ATPase, cell division inhibitor; alpha-beta-alpha layered, protein-ADP complex, cell cycle, hydrolase; HET: ADP; 2.00A {Pyrococcus furiosus} SCOP: c.37.1.10 PDB: 1g3r_A* 1ion_A*
Probab=92.50 E-value=1.1 Score=32.35 Aligned_cols=79 Identities=10% Similarity=0.024 Sum_probs=53.1
Q ss_pred CEEEEEEeCCCCcccHHHHHHhhhcCCEEEEEEeCCCcccHHHHHHHHHHHHhCCCCCCCcEEEEEeCCCCCCC-CCHHH
Q 029517 55 NSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDA-VSADE 133 (192)
Q Consensus 55 ~~~~~i~D~~G~~~~~~~~~~~~~~~d~ii~v~D~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~~-~~~~~ 133 (192)
.+.+.|+|+|+... ......+..+|.+|+|++.. ..++..+...+..+.+. ...++-+|.|+.+.... ...++
T Consensus 111 ~yD~viiD~~~~~~--~~~~~~~~~ad~vi~v~~~~-~~~~~~~~~~~~~l~~~---~~~~~~vv~N~~~~~~~~~~~~~ 184 (237)
T 1g3q_A 111 KFDFILIDCPAGLQ--LDAMSAMLSGEEALLVTNPE-ISCLTDTMKVGIVLKKA---GLAILGFVLNRYGRSDRDIPPEA 184 (237)
T ss_dssp GCSEEEEECCSSSS--HHHHHHHTTCSEEEEEECSC-HHHHHHHHHHHHHHHHT---TCEEEEEEEEEETSCTTCCCHHH
T ss_pred cCCEEEEECCCCcC--HHHHHHHHHCCeEEEEecCC-cccHHHHHHHHHHHHhC---CCceEEEEEecCCcccchhHHHH
Confidence 46789999998654 33455678899999999875 44566666666666544 22456788999986542 34555
Q ss_pred HHhHcC
Q 029517 134 LARYLD 139 (192)
Q Consensus 134 ~~~~~~ 139 (192)
+.+.+.
T Consensus 185 ~~~~~~ 190 (237)
T 1g3q_A 185 AEDVME 190 (237)
T ss_dssp HHHHHC
T ss_pred HHHHhC
Confidence 555544
No 237
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=92.36 E-value=0.021 Score=43.62 Aligned_cols=45 Identities=18% Similarity=0.155 Sum_probs=21.6
Q ss_pred hccccHHHHHHHHhhhhccCCCCCCCCCCCCcceEEEEEEecCEEEEEEeCCCCc
Q 029517 13 FTKTEFHTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQP 67 (192)
Q Consensus 13 ~kst~~~~l~~~~~~~~~~~~~~~~~~~~~T~g~~~~~~~~~~~~~~i~D~~G~~ 67 (192)
=|||++|+|+++....++..++.+. .... +.. +..+.+|||||..
T Consensus 132 GKSsliN~l~~~~~~~~~~~~g~T~-------~~~~--~~~-~~~~~l~DtpG~~ 176 (282)
T 1puj_A 132 GKSTLINRLAKKNIAKTGDRPGITT-------SQQW--VKV-GKELELLDTPGIL 176 (282)
T ss_dssp SHHHHHHHHHTSCCC-------------------CC--EEE-TTTEEEEECCCCC
T ss_pred chHHHHHHHhcCceeecCCCCCeee-------eeEE--EEe-CCCEEEEECcCcC
Confidence 3788888888655443333333221 1111 212 2368999999953
No 238
>1wcv_1 SOJ, segregation protein; ATPase, bacterial, chromosome segregation; 1.6A {Thermus thermophilus} PDB: 2bej_A* 2bek_A*
Probab=90.78 E-value=0.64 Score=34.43 Aligned_cols=70 Identities=20% Similarity=0.060 Sum_probs=45.1
Q ss_pred cCEEEEEEeCCCCcccHHHHHHhhhcCCEEEEEEeCCCcccHHHHHHHHHHHH---hCCCCCCCcEE-EEEeCCCCCC
Q 029517 54 SNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVL---RNEDLQGAPLL-ILANKQDLPD 127 (192)
Q Consensus 54 ~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ii~v~D~~~~~s~~~~~~~~~~i~---~~~~~~~~pii-iv~nK~Dl~~ 127 (192)
..+.+.|+|+|+..... ....+..+|.+|+++.++ ..++..+...+..+. ... ..+.+++ +|.|+.|...
T Consensus 110 ~~yD~iiiD~pp~~~~~--~~~~l~~aD~viiv~~~~-~~s~~~~~~~~~~l~~~~~~~-~~~~~~~gvv~N~~~~~~ 183 (257)
T 1wcv_1 110 EGYDLVLLDAPPSLSPL--TLNALAAAEGVVVPVQAE-YYALEGVAGLLATLEEVRAGL-NPRLRLLGILVTMYDGRT 183 (257)
T ss_dssp TTCSEEEEECCSSCCHH--HHHHHHHCSEEEEEEESS-THHHHHHHHHHHHHHHHHHHT-CTTCEEEEEEEESBCTTC
T ss_pred cCCCEEEEeCCCCCCHH--HHHHHHHCCeEEEEecCc-hHHHHHHHHHHHHHHHHHHHh-CCCceEEEEEEEeECCCc
Confidence 45789999999975432 334567899999999976 344554444444333 211 1356764 8999998643
No 239
>1hyq_A MIND, cell division inhibitor (MIND-1); MINC, FTSZ, bacterial cell division, cell cycle; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.10
Probab=90.73 E-value=0.42 Score=35.42 Aligned_cols=66 Identities=12% Similarity=0.056 Sum_probs=46.1
Q ss_pred CEEEEEEeCCCCcccHHHHHHhhhcCCEEEEEEeCCCcccHHHHHHHHHHHHhCCCCCCCcEEEEEeCCCCC
Q 029517 55 NSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLP 126 (192)
Q Consensus 55 ~~~~~i~D~~G~~~~~~~~~~~~~~~d~ii~v~D~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~ 126 (192)
.+.+.|+|+|+... ......+..+|.+|+|+... ..+...+...+..+.+. ...++-+|.|+.|..
T Consensus 110 ~yD~viiD~~~~~~--~~~~~~~~~ad~vi~v~~~~-~~~~~~~~~~~~~l~~~---~~~~~~vv~N~~~~~ 175 (263)
T 1hyq_A 110 STDILLLDAPAGLE--RSAVIAIAAAQELLLVVNPE-ISSITDGLKTKIVAERL---GTKVLGVVVNRITTL 175 (263)
T ss_dssp TCSEEEEECCSSSS--HHHHHHHHHSSEEEEEECSS-HHHHHHHHHHHHHHHHH---TCEEEEEEEEEECTT
T ss_pred hCCEEEEeCCCCCC--hHHHHHHHHCCEEEEEeCCC-hhHHHHHHHHHHHHHhc---CCCeeEEEEccCCcc
Confidence 56799999998654 33445677899999999875 44566666666655544 224566899999854
No 240
>3kjh_A CO dehydrogenase/acetyl-COA synthase complex, accessory protein COOC; Zn-bound dimer, nickel binding protein, ATPase; 1.90A {Carboxydothermus hydrogenoformans} PDB: 3kjg_A* 3kje_A 3kji_A*
Probab=90.69 E-value=0.32 Score=35.52 Aligned_cols=78 Identities=10% Similarity=0.015 Sum_probs=50.1
Q ss_pred cCEEEEEEeCCCCcccHHHHHHhhhcCCEEEEEEeCCCcccHHHHHHHHHHHHhCCCCCCCcEEEEEeCCCCCCCCCHHH
Q 029517 54 SNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAVSADE 133 (192)
Q Consensus 54 ~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ii~v~D~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~~~~~~~ 133 (192)
..+.+.|+|+|+.... .....+..+|.++++++++ ..++..+......+... ....+.++.|+.+.. ...++
T Consensus 130 ~~yD~viiD~pp~~~~--~~~~~l~~aD~viiv~~~~-~~s~~~~~~~~~~~~~~---~~~~~~~v~N~~~~~--~~~~~ 201 (254)
T 3kjh_A 130 DKKEAVVMDMGAGIEH--LTRGTAKAVDMMIAVIEPN-LNSIKTGLNIEKLAGDL---GIKKVRYVINKVRNI--KEEKL 201 (254)
T ss_dssp TCCSEEEEEECTTCTT--CCHHHHTTCSEEEEEECSS-HHHHHHHHHHHHHHHHH---TCSCEEEEEEEECCH--HHHHH
T ss_pred CCCCEEEEeCCCcccH--HHHHHHHHCCEEEEecCCC-HHHHHHHHHHHHHHHHc---CCccEEEEEeCCCCh--hHHHH
Confidence 4678999999986533 3344568899999999875 44566665555533333 224678899999832 12344
Q ss_pred HHhHcC
Q 029517 134 LARYLD 139 (192)
Q Consensus 134 ~~~~~~ 139 (192)
+.+.+.
T Consensus 202 ~~~~~~ 207 (254)
T 3kjh_A 202 IKKHLP 207 (254)
T ss_dssp HHHHSC
T ss_pred HHHHhc
Confidence 555554
No 241
>3q9l_A Septum site-determining protein MIND; ATPase, bacterial cell division inhibitor, MINC, MINE, cell hydrolase; HET: ATP; 2.34A {Escherichia coli} PDB: 3r9i_A* 3r9j_A*
Probab=89.12 E-value=0.65 Score=34.18 Aligned_cols=82 Identities=11% Similarity=0.038 Sum_probs=54.0
Q ss_pred CEEEEEEeCCCCcccHHHHHHhhhcCCEEEEEEeCCCcccHHHHHHHHHHHHhCCC-----CCCCcEEEEEeCCCCCC--
Q 029517 55 NSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNED-----LQGAPLLILANKQDLPD-- 127 (192)
Q Consensus 55 ~~~~~i~D~~G~~~~~~~~~~~~~~~d~ii~v~D~~~~~s~~~~~~~~~~i~~~~~-----~~~~piiiv~nK~Dl~~-- 127 (192)
.+.+.|+|+|+... ......+..+|.+|+|++++ ..++..+...+..+..... ....++-+|.|+.|...
T Consensus 113 ~yD~viiD~p~~~~--~~~~~~l~~ad~vi~v~~~~-~~s~~~~~~~~~~l~~~~~~~~~~~~~~~~~~v~N~~~~~~~~ 189 (260)
T 3q9l_A 113 DFEFIVCDSPAGIE--TGALMALYFADEAIITTNPE-VSSVRDSDRILGILASKSRRAENGEEPIKEHLLLTRYNPGRVS 189 (260)
T ss_dssp TCSEEEEECCSSSS--HHHHHHHHTCSEEEEEECSS-HHHHHHHHHHHHHHTTSSHHHHTTCSCCEEEEEEEEECHHHHH
T ss_pred CCCEEEEcCCCCCC--HHHHHHHHhCCEEEEEecCC-hhHHHHHHHHHHHHHHhccccccccCCcceEEEEecCCccccc
Confidence 67899999998653 24455677899999999875 4556666666666544321 01257788999998421
Q ss_pred ---CCCHHHHHhHcC
Q 029517 128 ---AVSADELARYLD 139 (192)
Q Consensus 128 ---~~~~~~~~~~~~ 139 (192)
....+++.+.+.
T Consensus 190 ~~~~~~~~~~~~~~~ 204 (260)
T 3q9l_A 190 RGDMLSMEDVLEILR 204 (260)
T ss_dssp TTSSCCHHHHHHHHC
T ss_pred cccccCHHHHHHHhC
Confidence 223456666554
No 242
>3bfv_A CAPA1, CAPB2, membrane protein CAPA1, protein tyrosine kinase; chimerical protein, P-loop protein, capsule biogenesis/degradation; HET: ADP; 1.80A {Staphylococcus aureus} PDB: 2ved_A*
Probab=88.89 E-value=1.5 Score=32.91 Aligned_cols=66 Identities=20% Similarity=0.255 Sum_probs=44.3
Q ss_pred CEEEEEEeCCCCcccHHHHHHhhhcCCEEEEEEeCCCcccHHHHHHHHHHHHhCCCCCCCcEE-EEEeCCCCC
Q 029517 55 NSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLL-ILANKQDLP 126 (192)
Q Consensus 55 ~~~~~i~D~~G~~~~~~~~~~~~~~~d~ii~v~D~~~~~s~~~~~~~~~~i~~~~~~~~~pii-iv~nK~Dl~ 126 (192)
.+.+.|+|+|+...... .......+|++|+|+... ..+...+...++.+.+. +.+++ +|+|+.|..
T Consensus 191 ~yD~VIIDtpp~~~~~d-~~~l~~~aD~vilVv~~~-~~~~~~~~~~~~~l~~~----~~~~~GvVlN~~~~~ 257 (271)
T 3bfv_A 191 NYNFVIIDTPPVNTVTD-AQLFSKFTGNVVYVVNSE-NNNKDEVKKGKELIEAT----GAKLLGVVLNRMPKD 257 (271)
T ss_dssp HCSEEEEECCCTTTCSH-HHHHHHHHCEEEEEEETT-SCCHHHHHHHHHHHHTT----TCEEEEEEEEEECC-
T ss_pred CCCEEEEeCCCCchHHH-HHHHHHHCCEEEEEEeCC-CCcHHHHHHHHHHHHhC----CCCEEEEEEeCCcCC
Confidence 46789999999653321 122346799999999885 34566666666665543 45655 889999854
No 243
>3la6_A Tyrosine-protein kinase WZC; P-loop protein, nucleotide binding domain, walker A motif, B protein kinase, oligomerization; HET: ADP; 3.20A {Escherichia coli}
Probab=88.78 E-value=1.7 Score=32.91 Aligned_cols=68 Identities=15% Similarity=0.038 Sum_probs=46.4
Q ss_pred CEEEEEEeCCCCcccHHHHHHhhhcCCEEEEEEeCCCcccHHHHHHHHHHHHhCCCCCCCcEEEEEeCCCCCC
Q 029517 55 NSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPD 127 (192)
Q Consensus 55 ~~~~~i~D~~G~~~~~~~~~~~~~~~d~ii~v~D~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~ 127 (192)
.+.+.|+|+|+...... .....+.+|++|+|+... ..+...+...++.+.+. ....+-+|+|+.|...
T Consensus 201 ~yD~VIIDtpp~~~~~d-a~~l~~~aD~vllVv~~~-~~~~~~~~~~~~~l~~~---g~~~~GvVlN~v~~~~ 268 (286)
T 3la6_A 201 NYDLVLIDTPPILAVTD-AAIVGRHVGTTLMVARYA-VNTLKEVETSLSRFEQN---GIPVKGVILNSIFRRA 268 (286)
T ss_dssp HCSEEEEECCCTTTCTH-HHHHTTTCSEEEEEEETT-TSBHHHHHHHHHHHHHT---TCCCCEEEEEEECCCC
T ss_pred CCCEEEEcCCCCcchHH-HHHHHHHCCeEEEEEeCC-CCcHHHHHHHHHHHHhC---CCCEEEEEEcCccccc
Confidence 45789999999754322 223456799999999976 34466666666666554 2345667899998654
No 244
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=86.64 E-value=0.31 Score=41.15 Aligned_cols=49 Identities=18% Similarity=0.128 Sum_probs=28.4
Q ss_pred ccccHHHHHHHHhhhhccCCCCCCCCCCCCcceEEEEEE---ecCEEEEEEeCCCCc
Q 029517 14 TKTEFHTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIE---VSNSKLVFWDLGGQP 67 (192)
Q Consensus 14 kst~~~~l~~~~~~~~~~~~~~~~~~~~~T~g~~~~~~~---~~~~~~~i~D~~G~~ 67 (192)
|||++|+|+++-.+. .+++ +....|.|+...... ..+..+.++||||..
T Consensus 51 KStLiN~L~g~~~~~--~~~~---tt~~~T~gi~~~~~~~~~~~~~~i~LiDTpGi~ 102 (592)
T 1f5n_A 51 KSYLMNKLAGKKKGF--SLGS---TVQSHTKGIWMWCVPHPKKPGHILVLLDTEGLG 102 (592)
T ss_dssp HHHHHHHHTTCSSCS--CCCC---SSSCCCCSEEEEEEECSSSTTCEEEEEEECCBC
T ss_pred HHHHHHhHcCCCCcc--ccCC---CCCCceeEEEEeecccccCCCceEEEecCCCcC
Confidence 788888887653321 2222 223456666433221 245689999999954
No 245
>2oze_A ORF delta'; para, walker type atpases, DNA segregation, PSM19035, plasmid, DNA binding protein; HET: AGS EPE; 1.83A {Streptococcus pyogenes}
Probab=86.07 E-value=1.9 Score=32.50 Aligned_cols=70 Identities=10% Similarity=0.077 Sum_probs=44.5
Q ss_pred CEEEEEEeCCCCcccHHHHHHhhhcCCEEEEEEeCCCcccHHHHHHHHHHHHhCC--CCCCCc-EEEEEeCCCCCC
Q 029517 55 NSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNE--DLQGAP-LLILANKQDLPD 127 (192)
Q Consensus 55 ~~~~~i~D~~G~~~~~~~~~~~~~~~d~ii~v~D~~~~~s~~~~~~~~~~i~~~~--~~~~~p-iiiv~nK~Dl~~ 127 (192)
.+.+.|+|+|+..... ....+..+|.+|+++.+. ..+...+...+..+.... ...+.+ +-+|.|+.|...
T Consensus 154 ~yD~IiiD~pp~~~~~--~~~~l~~aD~viiv~~~~-~~s~~~~~~~~~~l~~~~~~~~~~~~~~gvv~n~~~~~~ 226 (298)
T 2oze_A 154 DYDLIIIDTVPTPSVY--TNNAIVASDYVMIPLQAE-EESTNNIQNYISYLIDLQEQFNPGLDMIGFVPYLVDTDS 226 (298)
T ss_dssp GCSEEEEEECSSCSHH--HHHHHHHCSEEEEEECGG-GCCHHHHHHHHHHHHHHHHHHCTTCEEEEEEEEESCTTC
T ss_pred CCCEEEEECCCCccHH--HHHHHHHCCeEEEEecCc-HHHHHHHHHHHHHHHHHHHHhCCCCeEEEEEEEEECCCc
Confidence 4678999999975432 233455799999999875 345655555544443310 013566 448899998654
No 246
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=83.27 E-value=2.8 Score=33.88 Aligned_cols=66 Identities=14% Similarity=0.146 Sum_probs=39.4
Q ss_pred cCEEEEEEeCCCCcccH-HHHH-----HhhhcCCEEEEEEeCCCcccHHHHHHHHHHHHhCCCCCCCc-EEEEEeCCCCC
Q 029517 54 SNSKLVFWDLGGQPGLR-SIWE-----KYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAP-LLILANKQDLP 126 (192)
Q Consensus 54 ~~~~~~i~D~~G~~~~~-~~~~-----~~~~~~d~ii~v~D~~~~~s~~~~~~~~~~i~~~~~~~~~p-iiiv~nK~Dl~ 126 (192)
..+.+.|+||||..... .... ..+..++.+++|+|+....... .....+.. ..+ .-+|+||.|..
T Consensus 182 ~~~D~VIIDTpG~l~~~~~l~~~L~~~~~~~~p~~vllVvda~~g~~~~---~~~~~f~~-----~l~i~gvVlnK~D~~ 253 (433)
T 2xxa_A 182 KFYDVLLVDTAGRLHVDEAMMDEIKQVHASINPVETLFVVDAMTGQDAA---NTAKAFNE-----ALPLTGVVLTKVDGD 253 (433)
T ss_dssp TTCSEEEEECCCCCTTCHHHHHHHHHHHHHSCCSEEEEEEETTBCTTHH---HHHHHHHH-----HSCCCCEEEECTTSS
T ss_pred CCCCEEEEECCCcccccHHHHHHHHHHHHhhcCcceeEEeecchhHHHH---HHHHHHhc-----cCCCeEEEEecCCCC
Confidence 46789999999965431 1111 1244789999999987543222 22222221 133 34689999976
Q ss_pred C
Q 029517 127 D 127 (192)
Q Consensus 127 ~ 127 (192)
.
T Consensus 254 ~ 254 (433)
T 2xxa_A 254 A 254 (433)
T ss_dssp S
T ss_pred c
Confidence 4
No 247
>3pg5_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 3.30A {Corynebacterium diphtheriae}
Probab=80.21 E-value=4.6 Score=31.59 Aligned_cols=42 Identities=17% Similarity=0.193 Sum_probs=29.6
Q ss_pred CEEEEEEeCCCCcccHHHHHHhhhcCCEEEEEEeCCCcccHHHHH
Q 029517 55 NSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSK 99 (192)
Q Consensus 55 ~~~~~i~D~~G~~~~~~~~~~~~~~~d~ii~v~D~~~~~s~~~~~ 99 (192)
.+.+.|+|+|.... ......+..||.+|+++.+. ..++..+.
T Consensus 153 ~yD~VIID~pP~l~--~~~~~aL~~aD~viip~~~~-~~s~~~~~ 194 (361)
T 3pg5_A 153 RYDVIFFDVGPSLG--PFNRTVLLGCDAFVTPTATD-LFSFHAFG 194 (361)
T ss_dssp CCSEEEEECCSCCS--HHHHHHHTTCSEEEEEECCS-HHHHHHHH
T ss_pred CCCEEEEECCCCcC--HHHHHHHHHCCEEEEEecCC-hHHHHHHH
Confidence 67899999998653 34455667799999999875 33444333
No 248
>1cp2_A CP2, nitrogenase iron protein; oxidoreductase; 1.93A {Clostridium pasteurianum} SCOP: c.37.1.10
Probab=79.48 E-value=2.3 Score=31.35 Aligned_cols=70 Identities=14% Similarity=0.172 Sum_probs=43.0
Q ss_pred CEEEEEEeCCCCcccHHH-HHHhhhcCCEEEEEEeCCCcccHHHHHHHHHHHHhCCCCCCCcE-EEEEeCCCC
Q 029517 55 NSKLVFWDLGGQPGLRSI-WEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPL-LILANKQDL 125 (192)
Q Consensus 55 ~~~~~i~D~~G~~~~~~~-~~~~~~~~d~ii~v~D~~~~~s~~~~~~~~~~i~~~~~~~~~pi-iiv~nK~Dl 125 (192)
.+.+.|+|+||....... .......+|.+|+++.++ ..++..+...+..+.......+.++ -+|.|+.+.
T Consensus 115 ~yD~iiiD~~~~~~~~~~~~~~~~~~aD~viiv~~~~-~~s~~~~~~~~~~l~~~~~~~~~~~~gvv~N~~~~ 186 (269)
T 1cp2_A 115 DLDYVFYDVLGDVVCGGFAMPIREGKAQEIYIVASGE-MMALYAANNISKGIQKYAKSGGVRLGGIICNSRKV 186 (269)
T ss_dssp TCSEEEEEEECSSCSTTTTHHHHTTSCCEEEEEECSS-HHHHHHHHHHHHHHHHHBTTBBCEEEEEEEECCSS
T ss_pred CCCEEEEeCCchhhhhhhhhhhhHhhCCEEEEeecCc-hhhHHHHHHHHHHHHHHHhcCCCcEEEEEeecCCc
Confidence 478999999985432111 111225699999999875 4456666555555554321134554 678999874
No 249
>3cio_A ETK, tyrosine-protein kinase ETK; WZC, escherichia coli tyrosine kinase domain, signaling protein, transferase, inner membrane, membrane; 2.50A {Escherichia coli}
Probab=78.23 E-value=5.2 Score=30.40 Aligned_cols=66 Identities=9% Similarity=0.000 Sum_probs=41.9
Q ss_pred CEEEEEEeCCCCcccHHHHHHhhhcCCEEEEEEeCCCcccHHHHHHHHHHHHhCCCCCCCc-EEEEEeCCCCC
Q 029517 55 NSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAP-LLILANKQDLP 126 (192)
Q Consensus 55 ~~~~~i~D~~G~~~~~~~~~~~~~~~d~ii~v~D~~~~~s~~~~~~~~~~i~~~~~~~~~p-iiiv~nK~Dl~ 126 (192)
.+.+.|+|+|+...... .......+|++|+|+.... .+...+...++.+.+. +.+ +-+|+|+.|..
T Consensus 213 ~yD~VIIDtpp~~~~~d-~~~l~~~ad~vilV~~~~~-~~~~~~~~~~~~l~~~----~~~~~GvVlN~~~~~ 279 (299)
T 3cio_A 213 HYDLVIVDTPPMLAVSD-AAVVGRSVGTSLLVARFGL-NTAKEVSLSMQRLEQA----GVNIKGAILNGVIKR 279 (299)
T ss_dssp HCSEEEEECCCTTTCTH-HHHHGGGCSEEEEEEETTT-SCTTHHHHHHHHHHHT----TCCCCCEEEEECCCC
T ss_pred CCCEEEEcCCCCchhHH-HHHHHHHCCEEEEEEcCCC-ChHHHHHHHHHHHHhC----CCCeEEEEEeCCccC
Confidence 45789999999654322 1223467999999998753 3345555555555443 233 44788999864
No 250
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=77.27 E-value=1.4 Score=37.34 Aligned_cols=69 Identities=19% Similarity=0.308 Sum_probs=37.7
Q ss_pred EEEEEEeCCCCc-------------ccHHHHHHhhhcCCE-EEEEEeCCCcccHHHHHHHHHHHHhCCCCCCCcEEEEEe
Q 029517 56 SKLVFWDLGGQP-------------GLRSIWEKYYEEAHA-VVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILAN 121 (192)
Q Consensus 56 ~~~~i~D~~G~~-------------~~~~~~~~~~~~~d~-ii~v~D~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~n 121 (192)
..+.+.|.||-. ....+...|+++..+ ++++++......-..+......+.. .+.+.++|+|
T Consensus 147 p~LlLlDePGi~~~~t~~LD~~~~~~i~~li~~~l~~~~~iil~vvt~~~d~a~~~~l~la~~v~~----~g~rtI~VlT 222 (608)
T 3szr_A 147 PDLTLIDLPGITRVAVGNQPADIGYKIKTLIKKYIQRQETISLVVVPSNVDIATTEALSMAQEVDP----EGDRTIGILT 222 (608)
T ss_dssp CCEEEEECCC------CCSSCSHHHHHHHHHHHHTTSSSCCEEEEEESSSCTTTCHHHHHHHHHCS----SCCSEEEEEE
T ss_pred CceeEeeCCCccccccCCCCHHHHHHHHHHHHHHHhcCCCCceEEEeccchhccHHHHHHHHHHhh----cCCceEEEec
Confidence 358999999621 223345555555544 4555544322111222333333321 3678999999
Q ss_pred CCCCCCC
Q 029517 122 KQDLPDA 128 (192)
Q Consensus 122 K~Dl~~~ 128 (192)
|.|+...
T Consensus 223 K~Dlv~~ 229 (608)
T 3szr_A 223 KPDLVDK 229 (608)
T ss_dssp CGGGSSS
T ss_pred chhhcCc
Confidence 9998753
No 251
>2xj4_A MIPZ; replication, cell division, ATPase, WACA; 1.60A {Caulobacter vibrioides} PDB: 2xj9_A* 2xit_A
Probab=75.30 E-value=0.85 Score=34.43 Aligned_cols=34 Identities=18% Similarity=0.188 Sum_probs=26.8
Q ss_pred CEEEEEEeCCCCcccHHHHHHhhhcCCEEEEEEeCC
Q 029517 55 NSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAA 90 (192)
Q Consensus 55 ~~~~~i~D~~G~~~~~~~~~~~~~~~d~ii~v~D~~ 90 (192)
.+.+.|+|+|+.. .......+..+|.+|+++.++
T Consensus 103 ~yD~viiD~p~~~--~~~~~~~l~~aD~viiv~~~~ 136 (286)
T 2xj4_A 103 ECDFILIDTPGGD--SAITRMAHGRADLVVTPMNDS 136 (286)
T ss_dssp HCSEEEEECCSSC--CHHHHHHHHTCSEEEEEEESS
T ss_pred cCCEEEEcCCCCc--cHHHHHHHHHCCEEEEEEcCC
Confidence 4678999999975 334556778999999999875
No 252
>3q5d_A Atlastin-1; G protein, GTPase, GDP/GTP binding, hydrolase; HET: GDP; 2.70A {Homo sapiens} PDB: 3q5e_A* 3qnu_A* 3qof_A*
Probab=75.05 E-value=1.5 Score=35.73 Aligned_cols=54 Identities=11% Similarity=0.053 Sum_probs=30.2
Q ss_pred ccccHHHHHHHHhhh-----h----ccCCCCCC---CCCCCCcceEEEE--E-----EecCEEEEEEeCCCCcc
Q 029517 14 TKTEFHTLLEKLKSV-----Y----SNVEGLPP---DRIVPTVGLNIGR--I-----EVSNSKLVFWDLGGQPG 68 (192)
Q Consensus 14 kst~~~~l~~~~~~~-----~----~~~~~~~~---~~~~~T~g~~~~~--~-----~~~~~~~~i~D~~G~~~ 68 (192)
||+++|.|++.+.+- . .+. ..|. +.-..|.|+-... + .+....+.+.||+|...
T Consensus 80 KStLLN~llg~~~~~~~~~wl~~~~~~~-~~f~~~~t~~~~T~GIw~~~~p~~~~~~~~~~~~vvllDTeG~~~ 152 (447)
T 3q5d_A 80 KSFLMDFMLRYMYNQESVDWVGDYNEPL-TGFSWRGGSERETTGIQIWSEIFLINKPDGKKVAVLLMDTQGTFD 152 (447)
T ss_dssp HHHHHHHHHHHHHCCSTTTSSCCTTSBC-CSSCSCCSSCCCCCEEEEESSCEEEECSSSCEEEEEEEEEECCCS
T ss_pred HHHHHHHHhhhccccccccccccccccc-ceecCCCCCCCceeEEEEecCccccccCCCCcceEEEEcCCcccc
Confidence 899999999874210 0 000 1111 2334567764432 1 12357899999999643
No 253
>3ez9_A Para; DNA binding, winged-HTH, partition, biosynthetic protein; 2.80A {Salmonella enterica subsp} PDB: 3ezf_A
Probab=73.88 E-value=6.6 Score=31.05 Aligned_cols=69 Identities=10% Similarity=0.022 Sum_probs=39.1
Q ss_pred CEEEEEEeCCCCcccHHHHHHhhhcCCEEEEEEeCCCcc------cHHHHHHHHHHHHhCCCCCCC-cEEEEEeCCCC
Q 029517 55 NSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPS------RFEDSKTALEKVLRNEDLQGA-PLLILANKQDL 125 (192)
Q Consensus 55 ~~~~~i~D~~G~~~~~~~~~~~~~~~d~ii~v~D~~~~~------s~~~~~~~~~~i~~~~~~~~~-piiiv~nK~Dl 125 (192)
.+.+.|+|+|+.-. ......+..+|.+|+|..++..+ .+..+...+..+........+ .++.++|+.+.
T Consensus 247 ~yD~VIID~pP~~~--~~~~~al~~aD~vliv~~p~~~~~~~~~~~l~~l~~~~~~l~~~~~~~~l~giv~vl~~~~~ 322 (403)
T 3ez9_A 247 DYDFIFIDTGPHLD--PFLLNGLAASDLLLTPTPPAQVDFHSTLKYLTRLPEMLEQLEEEGVEPRLSASIGFMSKMTG 322 (403)
T ss_dssp GCSEEEEEECSSCS--HHHHHHHHHCSEEEEEECSSHHHHHHHHHHHHTHHHHHHHHHHTTCCCCCCEEEEEECC---
T ss_pred cCCEEEEECCCCcc--HHHHHHHHHCCEEEEEecCchhhHHHHHHHHHHHHHHHHHHHhcCCCCceeEEEEEEeccCC
Confidence 56899999999764 33444567899999999875321 112233333344333211222 25668899873
No 254
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=72.07 E-value=6.5 Score=31.69 Aligned_cols=67 Identities=15% Similarity=0.148 Sum_probs=38.2
Q ss_pred cCEEEEEEeCCCCcccH-HHHH-----HhhhcCCEEEEEEeCCCcccHHHHHHHHHHHHhCCCCCCCcEEEEEeCCCCCC
Q 029517 54 SNSKLVFWDLGGQPGLR-SIWE-----KYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPD 127 (192)
Q Consensus 54 ~~~~~~i~D~~G~~~~~-~~~~-----~~~~~~d~ii~v~D~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~ 127 (192)
..+.+.|+||||..... .... ...-.++.+++|+|+.... .+......+... . ...-+|+||.|...
T Consensus 179 ~~~DvVIIDTaG~l~~d~~l~~el~~i~~~~~pd~vlLVvDa~tgq---~av~~a~~f~~~---l-~i~GVIlTKlD~~~ 251 (425)
T 2ffh_A 179 EARDLILVDTAGRLQIDEPLMGELARLKEVLGPDEVLLVLDAMTGQ---EALSVARAFDEK---V-GVTGLVLTKLDGDA 251 (425)
T ss_dssp TTCSEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGTT---HHHHHHHHHHHH---T-CCCEEEEESGGGCS
T ss_pred CCCCEEEEcCCCcccccHHHHHHHHHhhhccCCceEEEEEeccchH---HHHHHHHHHHhc---C-CceEEEEeCcCCcc
Confidence 45789999999965321 1111 1122589999999986432 222222333222 1 12456889999754
No 255
>2afh_E Nitrogenase iron protein 1; nitrogen fixation, iron-sulfur, metal-binding, molybdenum, oxidoreductase; HET: HCA CFN CLF PGE PG4 P6G 1PE; 2.10A {Azotobacter vinelandii} SCOP: c.37.1.10 PDB: 1g1m_A 1g5p_A 1m1y_E* 1m34_E* 1n2c_E* 1nip_A* 1fp6_A* 2afi_E* 2afk_E* 2nip_A 1de0_A 1xcp_A* 1xdb_A 1xd8_A 1xd9_A* 1g20_E* 1g21_E* 2c8v_A* 1rw4_A
Probab=71.63 E-value=4.8 Score=30.08 Aligned_cols=70 Identities=10% Similarity=0.129 Sum_probs=41.3
Q ss_pred CEEEEEEeCCCCcccHHH-HHHhhhcCCEEEEEEeCCCcccHHHHHHHHHHHHhCCCCCCCc-EEEEEeCCCC
Q 029517 55 NSKLVFWDLGGQPGLRSI-WEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAP-LLILANKQDL 125 (192)
Q Consensus 55 ~~~~~i~D~~G~~~~~~~-~~~~~~~~d~ii~v~D~~~~~s~~~~~~~~~~i~~~~~~~~~p-iiiv~nK~Dl 125 (192)
.+.+.|+|+||....... .......+|.+|+++.++ ..++..+...+..+.......+.+ .-+|.|+.+.
T Consensus 118 ~yD~ViID~~~~~~~~~~~~~~~~~~aD~viiv~~~~-~~s~~~~~~~~~~l~~~~~~~~~~~~gvv~N~~~~ 189 (289)
T 2afh_E 118 DLDFVFYDVLGDVVCGGFAMPIRENKAQEIYIVCSGE-MMAMYAANNISKGIVKYANSGSVRLGGLICNSRNT 189 (289)
T ss_dssp TCSEEEEEEECSSCCTTTTHHHHTTCCCEEEEEECSS-HHHHHHHHHHHHHHHHHHTTSCCEEEEEEEECCCC
T ss_pred CCCEEEEeCCCccccchhhhhhhhhhCCEEEEEecCC-HHHHHHHHHHHHHHHHHHhcCCCceEEEEEecCCc
Confidence 578999999985422111 111235799999999875 445555555554444321113455 4578899863
No 256
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=70.48 E-value=13 Score=28.60 Aligned_cols=67 Identities=22% Similarity=0.227 Sum_probs=38.5
Q ss_pred cCEEEEEEeCCCCcccHHHH-------HHhh-----hcCCEEEEEEeCCCcccHHHHHHHHHHHHhCCCCCCCcEEEEEe
Q 029517 54 SNSKLVFWDLGGQPGLRSIW-------EKYY-----EEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILAN 121 (192)
Q Consensus 54 ~~~~~~i~D~~G~~~~~~~~-------~~~~-----~~~d~ii~v~D~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~n 121 (192)
..+.+.|+||||........ ...+ ..+|.+++|+|+... .+.+.. ...+... -...-+|.|
T Consensus 190 ~~yD~VIIDTpg~l~~~~~l~~eL~~~~~vi~~~~p~~~d~vllVl~a~~~--~~~l~~-~~~~~~~----~~i~GvVlt 262 (320)
T 1zu4_A 190 QNYDLLLIDTAGRLQNKTNLMAELEKMNKIIQQVEKSAPHEVLLVIDATTG--QNGVIQ-AEEFSKV----ADVSGIILT 262 (320)
T ss_dssp TTCSEEEEECCCCGGGHHHHHHHHHHHHHHHHTTCTTCCSEEEEEEEGGGT--HHHHHH-HHHHTTT----SCCCEEEEE
T ss_pred cCCCEEEEcCCCcccccHHHHHHHHHHHHHHhcccCCCCceEEEEEECCCc--HHHHHH-HHHHhhc----CCCcEEEEe
Confidence 46789999999976542111 1112 237899999998733 333322 2222211 123447889
Q ss_pred CCCCCC
Q 029517 122 KQDLPD 127 (192)
Q Consensus 122 K~Dl~~ 127 (192)
|.|...
T Consensus 263 k~d~~~ 268 (320)
T 1zu4_A 263 KMDSTS 268 (320)
T ss_dssp CGGGCS
T ss_pred CCCCCC
Confidence 999754
No 257
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=64.69 E-value=17 Score=27.70 Aligned_cols=67 Identities=18% Similarity=0.157 Sum_probs=37.2
Q ss_pred cCEEEEEEeCCCCcccHHHH-------HHhh-----hcCCEEEEEEeCCCcccHHHHHHHHHHHHhCCCCCCCcEEEEEe
Q 029517 54 SNSKLVFWDLGGQPGLRSIW-------EKYY-----EEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILAN 121 (192)
Q Consensus 54 ~~~~~~i~D~~G~~~~~~~~-------~~~~-----~~~d~ii~v~D~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~n 121 (192)
....+.|.||||........ ...+ ..++.+++|+|+... .+.+. ....+.+. .+ ..-+|+|
T Consensus 185 ~~~dvvIiDtpg~~~~~~~l~~eL~~l~~~i~~~i~~~p~~vllVlda~t~--~~~l~-~a~~~~~~---~~-i~gvVlT 257 (306)
T 1vma_A 185 RNKDVVIIDTAGRLHTKKNLMEELRKVHRVVKKKIPDAPHETLLVIDATTG--QNGLV-QAKIFKEA---VN-VTGIILT 257 (306)
T ss_dssp TTCSEEEEEECCCCSCHHHHHHHHHHHHHHGGGTCTTCCSEEEEEEEGGGH--HHHHH-HHHHHHHH---SC-CCEEEEE
T ss_pred cCCCEEEEECCCchhhHHHHHHHHHHHHHHHhhccCCCCcEEEEEEECCCC--HHHHH-HHHHHHhc---CC-CCEEEEe
Confidence 35678999999964332211 1122 237889999998633 22222 22333322 12 2345679
Q ss_pred CCCCCC
Q 029517 122 KQDLPD 127 (192)
Q Consensus 122 K~Dl~~ 127 (192)
|.|...
T Consensus 258 k~D~~~ 263 (306)
T 1vma_A 258 KLDGTA 263 (306)
T ss_dssp CGGGCS
T ss_pred CCCCcc
Confidence 999754
No 258
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=58.43 E-value=21 Score=26.99 Aligned_cols=67 Identities=13% Similarity=0.146 Sum_probs=37.2
Q ss_pred cCEEEEEEeCCCCccc--HHH--HHHh--hhcCCEEEEEEeCCCcccHHHHHHHHHHHHhCCCCCCCcEEEEEeCCCCCC
Q 029517 54 SNSKLVFWDLGGQPGL--RSI--WEKY--YEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPD 127 (192)
Q Consensus 54 ~~~~~~i~D~~G~~~~--~~~--~~~~--~~~~d~ii~v~D~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~ 127 (192)
..+.+.|+|+||.... ..+ .... .-.++.+++|+|+... .........+... -...-+|.||.|...
T Consensus 179 ~~~D~viiDtpp~~~~d~~~~~~l~~~~~~~~~~~~~lv~~~~~~---~~~~~~~~~~~~~----~~i~givlnk~d~~~ 251 (295)
T 1ls1_A 179 EARDLILVDTAGRLQIDEPLMGELARLKEVLGPDEVLLVLDAMTG---QEALSVARAFDEK----VGVTGLVLTKLDGDA 251 (295)
T ss_dssp HTCCEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGT---HHHHHHHHHHHHH----TCCCEEEEECGGGCS
T ss_pred CCCCEEEEeCCCCccccHHHHHHHHHHhhhcCCCEEEEEEeCCCc---HHHHHHHHHHhhc----CCCCEEEEECCCCCc
Confidence 4678999999986432 111 1111 1258889999997632 2222222222221 123457899999754
No 259
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=56.81 E-value=13 Score=28.70 Aligned_cols=94 Identities=17% Similarity=0.056 Sum_probs=49.8
Q ss_pred CEEEEEEeCCCCcc----cHHHHHHh--hhcCCEEEEEEeCCCcccHHHHHHHHHHHHhCCCCCCCcEEEEEeCCCCCCC
Q 029517 55 NSKLVFWDLGGQPG----LRSIWEKY--YEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDA 128 (192)
Q Consensus 55 ~~~~~i~D~~G~~~----~~~~~~~~--~~~~d~ii~v~D~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~~ 128 (192)
...+.++|++|... ........ .-..|-.+++.|+.... .+......+.+. . -.-.+++||.|....
T Consensus 211 ~~d~vliDtaG~~~~~~~l~~eL~~i~ral~~de~llvLDa~t~~---~~~~~~~~~~~~---~-~it~iilTKlD~~a~ 283 (328)
T 3e70_C 211 GIDVVLIDTAGRSETNRNLMDEMKKIARVTKPNLVIFVGDALAGN---AIVEQARQFNEA---V-KIDGIILTKLDADAR 283 (328)
T ss_dssp TCSEEEEEECCSCCTTTCHHHHHHHHHHHHCCSEEEEEEEGGGTT---HHHHHHHHHHHH---S-CCCEEEEECGGGCSC
T ss_pred cchhhHHhhccchhHHHHHHHHHHHHHHHhcCCCCEEEEecHHHH---HHHHHHHHHHHh---c-CCCEEEEeCcCCccc
Confidence 34567899999642 21111111 12478899999987553 333333333322 1 234678899997432
Q ss_pred CCHHHHHhHcCccccCCcceEEEEeeecCCCCHHHH
Q 029517 129 VSADELARYLDLKKLDERVCMFEAVSGYDGFGIKES 164 (192)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~e~ 164 (192)
. -.+..... ..+.++..++ +|++++++
T Consensus 284 ~--G~~l~~~~-----~~~~pi~~i~--~Ge~v~dl 310 (328)
T 3e70_C 284 G--GAALSISY-----VIDAPILFVG--VGQGYDDL 310 (328)
T ss_dssp C--HHHHHHHH-----HHTCCEEEEE--CSSSTTCE
T ss_pred h--hHHHHHHH-----HHCCCEEEEe--CCCCcccc
Confidence 2 22222222 2245555555 77777554
No 260
>3pzx_A Formate--tetrahydrofolate ligase; HET: TOE; 2.20A {Moorella thermoacetica} SCOP: c.37.1.10 PDB: 1fp7_A 1fpm_A* 3qb6_A* 3qus_A* 3rbo_A* 3sin_A* 1eg7_A
Probab=55.92 E-value=23 Score=29.33 Aligned_cols=58 Identities=14% Similarity=0.071 Sum_probs=42.6
Q ss_pred CCCcEEEEEeCCCCCCCCCHHHHHhHcCccccCCcceEEEEeeecCCCCHHHHHHHHHHHHHh
Q 029517 112 QGAPLLILANKQDLPDAVSADELARYLDLKKLDERVCMFEAVSGYDGFGIKESVEWLVEVMER 174 (192)
Q Consensus 112 ~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~e~~~~i~~~i~~ 174 (192)
.+.|+++.+|+..-....+.+.+.+++. ..+..+..+=++-|.|-.++-+.+++.+.+
T Consensus 373 fGvpvVVaiN~F~tDT~aEi~~v~~~~~-----~~G~~~~~~wa~GG~G~~~LA~~Vv~~~~~ 430 (557)
T 3pzx_A 373 FGVPAVVAINAFPTDTEAELNLLYELCA-----KAGAEVALSWAKGGEGGLELARKVLQTLES 430 (557)
T ss_dssp TTCCEEEEEECCTTCCHHHHHHHHHHCC-----SSEEEEECHHHHGGGGGHHHHHHHHHHHHH
T ss_pred cCCCeEEEEeCCCCCCHHHHHHHHHHHH-----HcCCCEEEEecccchhHHHHHHHHHHHHhc
Confidence 4799999999987554445556777776 667766555455688999998888887764
No 261
>1byi_A Dethiobiotin synthase; biotin synthesis, cyclo-ligase, ligase; 0.97A {Escherichia coli} SCOP: c.37.1.10 PDB: 1bs1_A* 1a82_A 1dad_A* 1dae_A* 1daf_A* 1dag_A* 1dah_A* 1dai_A* 1dak_A* 1dam_A* 1dbs_A 1dts_A
Probab=55.46 E-value=49 Score=23.13 Aligned_cols=67 Identities=12% Similarity=0.121 Sum_probs=39.7
Q ss_pred CEEEEEEeCCCCccc--H--HHHHHhhhcC-CEEEEEEeCCCcccHHHHHHHHHHHHhCCCCCCCc-EEEEEeCCCCC
Q 029517 55 NSKLVFWDLGGQPGL--R--SIWEKYYEEA-HAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAP-LLILANKQDLP 126 (192)
Q Consensus 55 ~~~~~i~D~~G~~~~--~--~~~~~~~~~~-d~ii~v~D~~~~~s~~~~~~~~~~i~~~~~~~~~p-iiiv~nK~Dl~ 126 (192)
.+.+.|+|+||.-.. . .......... +.+|+|.+.. ..+...+...++.+.. .+.+ .-+|.|+.|..
T Consensus 108 ~yD~viID~p~~l~~p~~~~~~~~~l~~~~~~~vi~v~~~~-~~~~~~~~~~i~~l~~----~~~~i~gvvlN~~~~~ 180 (224)
T 1byi_A 108 QADWVLVEGAGGWFTPLSDTFTFADWVTQEQLPVILVVGVK-LGCINHAMLTAQVIQH----AGLTLAGWVANDVTPP 180 (224)
T ss_dssp TCSEEEEECSSSTTCEEETTEEHHHHHHHHTCCEEEEEECS-TTHHHHHHHHHHHHHH----TTCCEEEEEEECCSSC
T ss_pred hCCEEEEEcCCccccCCCcchhHHHHHHHhCCCEEEEecCC-CCcHHHHHHHHHHHHH----CCCcEEEEEEeCCCCc
Confidence 578999999975321 0 0111222332 3478888774 4556666666666542 3455 44788999864
No 262
>3u7r_A NADPH-dependent FMN reductase; alpha/beta twisted open-sheet, lavoprotein, quinone reductas oxidoreductase; HET: MSE FNR 2PE; 1.40A {Paracoccus denitrificans}
Probab=53.76 E-value=20 Score=25.18 Aligned_cols=52 Identities=12% Similarity=0.206 Sum_probs=33.9
Q ss_pred HHHHhhhcCCEEEEEEeCC---CcccHHHHHHHHHHHHhCCCCCCCcEEEEEeCC
Q 029517 72 IWEKYYEEAHAVVFVIDAA---CPSRFEDSKTALEKVLRNEDLQGAPLLILANKQ 123 (192)
Q Consensus 72 ~~~~~~~~~d~ii~v~D~~---~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~ 123 (192)
.+...+..+|++|++.--- -+..+..+.+|+..........++|+.+++.=.
T Consensus 60 ~l~~~i~~aD~~ii~tPeYn~s~pg~LKn~iDwlsr~~~~~~~~gKpv~~v~~S~ 114 (190)
T 3u7r_A 60 RLKDRIEHSDAVLAITPEYNRSYPGMIKNAIDWATRPYGQNSWKGKPAAVIGTSP 114 (190)
T ss_dssp HHHHHHHTSSEEEEECCCBTTBCCHHHHHHHHHHHCSTTCCTTTTCEEEEEEEES
T ss_pred HHHHHHHhCCcEEEechhhcccCCHHHHHHHHHhcccccCCccCCCEEEEEEeCC
Confidence 3455688999999998543 344556666665432233445789999987644
No 263
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=52.60 E-value=18 Score=27.34 Aligned_cols=67 Identities=18% Similarity=0.155 Sum_probs=38.2
Q ss_pred cCEEEEEEeCCCCcccHH-H---HHHhhh--cCCEEEEEEeCCCcccHHHHHHHHHHHHhCCCCCCCcEEEEEeCCCCCC
Q 029517 54 SNSKLVFWDLGGQPGLRS-I---WEKYYE--EAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPD 127 (192)
Q Consensus 54 ~~~~~~i~D~~G~~~~~~-~---~~~~~~--~~d~ii~v~D~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~ 127 (192)
.+..+.|+||+|...... . ....+. ..+.+++|+|++.. ...+..+...+.. .+ ..-++.||.|...
T Consensus 181 ~~~dlvIiDT~G~~~~~~~~~~el~~~l~~~~~~~~~lVl~at~~--~~~~~~~~~~~~~----l~-~~giVltk~D~~~ 253 (296)
T 2px0_A 181 SEYDHVFVDTAGRNFKDPQYIDELKETIPFESSIQSFLVLSATAK--YEDMKHIVKRFSS----VP-VNQYIFTKIDETT 253 (296)
T ss_dssp GGSSEEEEECCCCCTTSHHHHHHHHHHSCCCTTEEEEEEEETTBC--HHHHHHHTTTTSS----SC-CCEEEEECTTTCS
T ss_pred cCCCEEEEeCCCCChhhHHHHHHHHHHHhhcCCCeEEEEEECCCC--HHHHHHHHHHHhc----CC-CCEEEEeCCCccc
Confidence 456899999999764322 1 122333 36778999988643 3444443332211 12 2345679999764
No 264
>3ez2_A Plasmid partition protein A; type IA, DNA binding, winged-HTH, DNA bindin; HET: ADP EPE; 2.05A {Escherichia coli} PDB: 3ez6_A* 3ez7_A
Probab=52.37 E-value=27 Score=27.41 Aligned_cols=34 Identities=12% Similarity=0.164 Sum_probs=26.1
Q ss_pred CEEEEEEeCCCCcccHHHHHHhhhcCCEEEEEEeCC
Q 029517 55 NSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAA 90 (192)
Q Consensus 55 ~~~~~i~D~~G~~~~~~~~~~~~~~~d~ii~v~D~~ 90 (192)
.+.+.|+|+|+.-.. .....+..+|.+|+++.++
T Consensus 244 ~yD~ViiD~pp~~~~--~~~~~l~~aD~vliv~~p~ 277 (398)
T 3ez2_A 244 DYDFILVDSGPHLDA--FLKNALASANILFTPLPPA 277 (398)
T ss_dssp TCSEEEEEECSCCSH--HHHHHHHHCSEEEEEECCS
T ss_pred cCCEEEEeCCCCccH--HHHHHHHHCCEEEEEecCc
Confidence 578999999997633 2344567899999999875
No 265
>2q62_A ARSH; alpha/beta, flavoprotein; 1.80A {Sinorhizobium meliloti}
Probab=47.44 E-value=67 Score=23.50 Aligned_cols=52 Identities=12% Similarity=0.024 Sum_probs=35.6
Q ss_pred HHHHhhhcCCEEEEEEeCCCcccHHHHHHHHHHHHhC----CCCCCCcEEEEEeCC
Q 029517 72 IWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRN----EDLQGAPLLILANKQ 123 (192)
Q Consensus 72 ~~~~~~~~~d~ii~v~D~~~~~s~~~~~~~~~~i~~~----~~~~~~piiiv~nK~ 123 (192)
.+...+..||++|++.-.-+..-...++.++..+... ....++|+.++++--
T Consensus 91 ~l~~~i~~AD~iI~~sP~Yn~sipa~LKn~iD~l~~~~~~~~~l~gK~v~~v~tsG 146 (247)
T 2q62_A 91 ELRELSIWSEGQVWVSPERHGAMTGIMKAQIDWIPLSTGSIRPTQGKTLAVMQVSG 146 (247)
T ss_dssp HHHHHHHHCSEEEEEEECSSSSCCHHHHHHHHTSCSCBTTBCSSTTCEEEEEEECS
T ss_pred HHHHHHHHCCEEEEEeCCCCCCccHHHHHHHHHhhhccCcccccCCCEEEEEEeCC
Confidence 3445678899999999876555445566666666432 234689999988853
No 266
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=47.04 E-value=21 Score=28.85 Aligned_cols=51 Identities=18% Similarity=0.158 Sum_probs=34.5
Q ss_pred EEEEEEeCCCCc--ccHHHH--------HHhhhcCCEEEEEEeCCCcccHHHHHHHHHHHHh
Q 029517 56 SKLVFWDLGGQP--GLRSIW--------EKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLR 107 (192)
Q Consensus 56 ~~~~i~D~~G~~--~~~~~~--------~~~~~~~d~ii~v~D~~~~~s~~~~~~~~~~i~~ 107 (192)
....+||..|.+ +.+..+ ..++..+.+.++|+|.++. +.+....|+..+.+
T Consensus 87 ~~~~ifd~~g~~~~r~re~~~~~~l~~~~~~l~~~~G~~vV~D~tn~-~~~~R~~~~~~~~~ 147 (469)
T 1bif_A 87 KSFEFFLPDNEEGLKIRKQCALAALNDVRKFLSEEGGHVAVFDATNT-TRERRAMIFNFGEQ 147 (469)
T ss_dssp CCGGGGCTTCHHHHHHHHHHHHHHHHHHHHHHHTTCCSEEEEESCCC-SHHHHHHHHHHHHH
T ss_pred CcccccCCCCHHHHHHHHHHHHHHHHHHHHHHHhCCCCEEEEeCCCC-CHHHHHHHHHHHHh
Confidence 445789999973 333333 5567778999999999987 45555566555543
No 267
>2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W*
Probab=44.34 E-value=13 Score=30.81 Aligned_cols=31 Identities=16% Similarity=0.174 Sum_probs=26.8
Q ss_pred cceEEEEeeecCCCCHHHHHHHHHHHHHhcc
Q 029517 146 RVCMFEAVSGYDGFGIKESVEWLVEVMERSK 176 (192)
Q Consensus 146 ~~~~~~~~Sa~~~~gi~e~~~~i~~~i~~~~ 176 (192)
...|++..||.+|.||+++++.+.+.+....
T Consensus 250 ~~~Pv~~gSA~~~~Gv~~LLd~i~~~~P~P~ 280 (529)
T 2h5e_A 250 EITPVFFGTALGNFGVDHMLDGLVEWAPAPM 280 (529)
T ss_dssp SEEEEEECBTTTTBSHHHHHHHHHHHSCSSC
T ss_pred ceeEEEeeecccCCCHHHHHHHHHHhCCCCC
Confidence 3578999999999999999999999876543
No 268
>4hs4_A Chromate reductase; triple-layered, A/B/A structure, NAD(P)H-dependent FMN reduc oxidoreductase; HET: FMN; 2.10A {Gluconacetobacter hansenii} PDB: 3s2y_A* 4h6p_A*
Probab=43.35 E-value=74 Score=22.29 Aligned_cols=52 Identities=23% Similarity=0.196 Sum_probs=35.1
Q ss_pred HHHHhhhcCCEEEEEEeCCCcccHHHHHHHHHHHHhC--CCCCCCcEEEEEeCC
Q 029517 72 IWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRN--EDLQGAPLLILANKQ 123 (192)
Q Consensus 72 ~~~~~~~~~d~ii~v~D~~~~~s~~~~~~~~~~i~~~--~~~~~~piiiv~nK~ 123 (192)
.+..-+..+|++|++.-.-+..--..++.|+..+... ....++|+.++++--
T Consensus 66 ~~~~~i~~AD~iVi~tP~Y~~s~p~~LK~~iD~~~~~~~~~l~gK~v~~v~tsg 119 (199)
T 4hs4_A 66 TMAQQIATADAVVIVTPEYNYSVPGVLKNAIDWLSRVSPQPLAGKPVALVTASP 119 (199)
T ss_dssp HHHHHHHHSSEEEEEECCBTTBCCHHHHHHHHHHTTSSSCTTTTCEEEEEEECS
T ss_pred HHHHHHHhCCEEEEEcCccCCCcCHHHHHHHHHhcccCCcccCCCEEEEEEeCC
Confidence 3445678999999998765544444555666666541 234689999998853
No 269
>3do6_A Formate--tetrahydrofolate ligase; TM1766, putative formyltetrahydrofolate synthetase, structural genomics; HET: MSE; 1.85A {Thermotoga maritima} SCOP: c.37.1.0
Probab=41.29 E-value=34 Score=28.20 Aligned_cols=86 Identities=12% Similarity=0.079 Sum_probs=53.3
Q ss_pred cCCEEEEEEeC-------------CCcccHHH-------HHHHHHHHHhCCCCCCCcEEEEEeCCCCCCCCCHHHHHhHc
Q 029517 79 EAHAVVFVIDA-------------ACPSRFED-------SKTALEKVLRNEDLQGAPLLILANKQDLPDAVSADELARYL 138 (192)
Q Consensus 79 ~~d~ii~v~D~-------------~~~~s~~~-------~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~ 138 (192)
..|++++|.-+ -..+..+. +..-++.+.+ .+.|+++.+|+..-....+.+.+.+++
T Consensus 310 ~P~avVlVATvRALK~hGG~~~~~l~~enl~al~~G~~NL~kHIen~~~----fGvpvVVaiN~F~tDT~aEi~~v~~~~ 385 (543)
T 3do6_A 310 YPNAAVLVATVRALKYHGGANLKNIHEENLEALKEGFKNLRVHVENLRK----FNLPVVVALNRFSTDTEKEIAYVVKEC 385 (543)
T ss_dssp CCSEEEEEECHHHHHHHTTCCGGGTTSCCHHHHHHHHHHHHHHHHHHHH----TTCCEEEEEECCTTCCHHHHHHHHHHH
T ss_pred CCCEEEEEeehHHHHhcCCCChhhcCccCHHHHHHHHHHHHHHHHHHHH----cCCCeEEEEeCCCCCCHHHHHHHHHHH
Confidence 47999999832 11233443 3344444443 379999999998654433445566666
Q ss_pred CccccCCcceEEEEeee--cCCCCHHHHHHHHHHHHH
Q 029517 139 DLKKLDERVCMFEAVSG--YDGFGIKESVEWLVEVME 173 (192)
Q Consensus 139 ~~~~~~~~~~~~~~~Sa--~~~~gi~e~~~~i~~~i~ 173 (192)
. ..+..+..+.. +-|.|-.++-+.+++.+.
T Consensus 386 ~-----~~G~~~~~s~~wa~GG~G~~~LA~~Vv~~~e 417 (543)
T 3do6_A 386 E-----KLGVRVAVSEVFKKGSEGGVELAKAVAEAAK 417 (543)
T ss_dssp H-----TTTCEEEEECHHHHGGGGSHHHHHHHHHHCC
T ss_pred H-----HcCCCEEEechhhccchhHHHHHHHHHHHhc
Confidence 6 55666654443 457788888777777654
No 270
>4ici_A Putative flavoprotein; PF12682 family protein, flavodoxin_4, structural genomics, J center for structural genomics, JCSG; HET: MSE FMN EPE; 1.40A {Bacteroides eggerthii}
Probab=41.27 E-value=82 Score=21.39 Aligned_cols=84 Identities=14% Similarity=-0.011 Sum_probs=49.1
Q ss_pred hhhcCCEEEEEEeCCCcccHHHHHHHHHHHHhCCCCCCCcEEEEEeCCCCCCCCCHHHHHhHcCccccCCcceEEEEeee
Q 029517 76 YYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAVSADELARYLDLKKLDERVCMFEAVSG 155 (192)
Q Consensus 76 ~~~~~d~ii~v~D~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 155 (192)
.+...|.+++.+-.-...-...+..++..+ ...+++++++++-.........+.+.+.+.. ..+...-.
T Consensus 84 ~l~~yD~iilg~Pvy~g~~~~~~~~fl~~~----~l~gk~v~~f~t~g~~~~g~a~~~l~~~l~~-------~~~~~g~~ 152 (171)
T 4ici_A 84 NIGTYDVVFIGYPIWWDLAPRIINTFIEGH----SLKGKTVVPFATSGGSSIGNSATVLKKTYPD-------LNWKEGRL 152 (171)
T ss_dssp TGGGCSEEEEEEECBTTBCCHHHHHHHHHS----CCTTSEEEEEEECSSCCSHHHHHHHHHHSTT-------SEECCCEE
T ss_pred cHhHCCEEEEecccccCCchHHHHHHHHHc----CCCcCEEEEEEecCCCCcchHHHHHHHHcCC-------CeeccCeE
Confidence 356889999999875444345555666554 3467899999987643222234566666651 22222222
Q ss_pred cCCCCHHHHHHHHHH
Q 029517 156 YDGFGIKESVEWLVE 170 (192)
Q Consensus 156 ~~~~gi~e~~~~i~~ 170 (192)
..+..-+++-+||-+
T Consensus 153 ~~~~~~~~i~~Wl~~ 167 (171)
T 4ici_A 153 LNRTDEKAIRAWLDV 167 (171)
T ss_dssp CSSCCHHHHHHHHHH
T ss_pred ecCCCHHHHHHHHHH
Confidence 333456677778754
No 271
>3fvw_A Putative NAD(P)H-dependent FMN reductase; Q8DWD8_strmu, SMR99, NESG, structural genomics, PSI-2, protein structure initiative; 2.30A {Streptococcus mutans}
Probab=40.02 E-value=67 Score=22.25 Aligned_cols=53 Identities=15% Similarity=0.002 Sum_probs=37.2
Q ss_pred HHHHhhhcCCEEEEEEeCCCcccHHHHHHHHHHHHhC---------CCCCCCcEEEEEeCCC
Q 029517 72 IWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRN---------EDLQGAPLLILANKQD 124 (192)
Q Consensus 72 ~~~~~~~~~d~ii~v~D~~~~~s~~~~~~~~~~i~~~---------~~~~~~piiiv~nK~D 124 (192)
.+...+..+|++|+..-.-...-...++.|+..+... ....++|+.++.+--.
T Consensus 60 ~~~~~i~~AD~iV~~sP~y~~~~p~~lK~~iD~~~~~~~~~~~~g~~~l~gK~~~i~~t~gg 121 (192)
T 3fvw_A 60 HAREEVQEADAIWIFSPVYNYAIPGPVKNLLDWLSRSLDLSDPTGPSVLQDKIVTVSSVANG 121 (192)
T ss_dssp HHHHHHHHCSEEEEECCCBTTBCCHHHHHHHHHHTSCSCSSCTTSCCTTTTCEEEEEEESCC
T ss_pred HHHHHHHhCCEEEEECcccccCCCHHHHHHHHHhhccccccCCCCCccCCCCEEEEEEeCCC
Confidence 3455678999999998765555445667777777642 2346789998877654
No 272
>2woj_A ATPase GET3; tail-anchored, membrane protein, targeting factor, endoplasmic reticulum, TRC40, ATP-binding, golgi apparatus; HET: ADP; 1.99A {Saccharomyces cerevisiae} PDB: 3h84_A 3zs8_A 3zs9_A* 3sja_A 3sjb_A 3sjc_A 3sjd_A* 3idq_A 3a36_A 3a37_A*
Probab=38.98 E-value=63 Score=25.02 Aligned_cols=42 Identities=10% Similarity=0.056 Sum_probs=29.3
Q ss_pred cCCEEEEEEeCCCcccHHHHHHHHHHHHhCCCCCCCcEEEEEeCCC
Q 029517 79 EAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQD 124 (192)
Q Consensus 79 ~~d~ii~v~D~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~D 124 (192)
.++.+++|..+. .-+..++...+..+... .-...-+|+|++.
T Consensus 234 ~~~~~vlV~~pe-~~si~ea~r~~~~L~~~---g~~~~gvVvN~v~ 275 (354)
T 2woj_A 234 DLTTFVCVCISE-FLSLYETERLIQELISY---DMDVNSIIVNQLL 275 (354)
T ss_dssp TTEEEEEEEESS-HHHHHHHHHHHHHHHHT---TCCEEEEEEEEEC
T ss_pred CCcEEEEEeCCC-cchHHHHHHHHHHHHHc---CCCCCEEEEecCC
Confidence 578899999865 45567777777766654 2234557899997
No 273
>3k1y_A Oxidoreductase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG, CDR100D; 2.50A {Corynebacterium diphtheriae} PDB: 3k20_A
Probab=38.63 E-value=78 Score=22.10 Aligned_cols=50 Identities=16% Similarity=0.087 Sum_probs=34.9
Q ss_pred HHHHhhhcCCEEEEEEeCCCcccHHHHHHHHHHHHhCCCCCCCcEEEEEeC
Q 029517 72 IWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANK 122 (192)
Q Consensus 72 ~~~~~~~~~d~ii~v~D~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK 122 (192)
.+...+..+|++|++.-.-+..-...++.++..+.. ....++|+.++.+-
T Consensus 78 ~~~~~i~~AD~ivi~sP~Y~~~~~~~lK~~iD~~~~-~~l~gK~~~~v~t~ 127 (191)
T 3k1y_A 78 EITSALSASDGLVVATPVFKASYTGLFKMFFDILDT-DALTGMPTIIAATA 127 (191)
T ss_dssp HHHHHHHHCSEEEEEEECBTTBSCHHHHHHHHHSCT-TTTTTCEEEEEEEE
T ss_pred HHHHHHHHCCEEEEEcCccCCcCcHHHHHHHHHhhh-hhcCCCEEEEEEeC
Confidence 345567899999999977655444556667666643 23468999998873
No 274
>3fwy_A Light-independent protochlorophyllide reductase I ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2}
Probab=38.28 E-value=86 Score=23.82 Aligned_cols=70 Identities=14% Similarity=0.129 Sum_probs=41.6
Q ss_pred CEEEEEEeCCCCcccHHHHHHhhhcCCEEEEEEeCCCcccHHHHHHHHHHHHhCCCCCCCcEE-EEEeCCCCC
Q 029517 55 NSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLL-ILANKQDLP 126 (192)
Q Consensus 55 ~~~~~i~D~~G~~~~~~~~~~~~~~~d~ii~v~D~~~~~s~~~~~~~~~~i~~~~~~~~~pii-iv~nK~Dl~ 126 (192)
.+.+.++|+++....... ...+..+|.+|++..+. ..++..+...++.+.......+.++. +++|+.+..
T Consensus 163 ~~D~v~iD~~~~~~~~~~-~~al~aAd~viIvt~~e-~~Al~~~~~l~~~i~~~~~~~~~~l~GiI~n~~~~~ 233 (314)
T 3fwy_A 163 DTDVVIFDVLGDVVCGGF-AAPLQHADQAVVVTAND-FDSIYAMNRIIAAVQAKSKNYKVRLAGCVANRSRAT 233 (314)
T ss_dssp SCSEEEEEECCSSCCGGG-GGGGGTCSEEEEEECSS-HHHHHHHHHHHHHHHTTTTTCCCEEEEEEEESCSCC
T ss_pred cCceEeeccCCcchhhhh-HhHHhhCCeEEEEeCCc-HHHHHHHHHHHHHHHHHhccCCCceEEEEEcCCCch
Confidence 456788998875432221 12456799999998764 34555666655555544332345543 567877643
No 275
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=37.56 E-value=55 Score=26.95 Aligned_cols=67 Identities=21% Similarity=0.200 Sum_probs=36.5
Q ss_pred cCEEEEEEeCCCCcccHHH----HHH---hhh-----cCCEEEEEEeCCCcccHHHHHHHHHHHHhCCCCCCCcEEEEEe
Q 029517 54 SNSKLVFWDLGGQPGLRSI----WEK---YYE-----EAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILAN 121 (192)
Q Consensus 54 ~~~~~~i~D~~G~~~~~~~----~~~---~~~-----~~d~ii~v~D~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~n 121 (192)
.++.+.++||+|....... ... ..+ ..+-+++|+|++... ........+... .++ -.+++|
T Consensus 374 ~~~DvVLIDTaGrl~~~~~lm~EL~kiv~iar~l~~~~P~evLLvLDattGq---~al~~ak~f~~~---~~i-tgvIlT 446 (503)
T 2yhs_A 374 RNIDVLIADTAGRLQNKSHLMEELKKIVRVMKKLDVEAPHEVMLTIDASTGQ---NAVSQAKLFHEA---VGL-TGITLT 446 (503)
T ss_dssp TTCSEEEECCCCSCCCHHHHHHHHHHHHHHHHTTCTTCSSEEEEEEEGGGTH---HHHHHHHHHHHH---TCC-SEEEEE
T ss_pred cCCCEEEEeCCCccchhhhHHHHHHHHHHHHHHhccCCCCeeEEEecCcccH---HHHHHHHHHHhh---cCC-CEEEEE
Confidence 3467889999997432221 111 122 256789999987552 222223333322 123 346899
Q ss_pred CCCCCC
Q 029517 122 KQDLPD 127 (192)
Q Consensus 122 K~Dl~~ 127 (192)
|.|...
T Consensus 447 KLD~ta 452 (503)
T 2yhs_A 447 KLDGTA 452 (503)
T ss_dssp CGGGCS
T ss_pred cCCCcc
Confidence 999644
No 276
>1rtt_A Conserved hypothetical protein; protein structure initiative, SAD with sulfur, putative REDU PSI; 1.28A {Pseudomonas aeruginosa} SCOP: c.23.5.4 PDB: 1x77_A*
Probab=36.33 E-value=52 Score=22.62 Aligned_cols=50 Identities=22% Similarity=0.216 Sum_probs=33.7
Q ss_pred HHhhhcCCEEEEEEeCCCcccHHHHHHHHHHHHhC--CCCCCCcEEEEEeCC
Q 029517 74 EKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRN--EDLQGAPLLILANKQ 123 (192)
Q Consensus 74 ~~~~~~~d~ii~v~D~~~~~s~~~~~~~~~~i~~~--~~~~~~piiiv~nK~ 123 (192)
...+..+|++|+..-.-...-...++.|+..+... ....++|+.++++--
T Consensus 67 ~~~l~~aD~ii~~sP~y~~~~p~~lK~~iD~~~~~~~~~l~gK~~~~~~t~g 118 (193)
T 1rtt_A 67 REQIRAADALLFATPEYNYSMAGVLKNAIDWASRPPEQPFSGKPAAILGASA 118 (193)
T ss_dssp HHHHHHCSEEEEECCEETTEECHHHHHHHHHHTCSSSCTTTTCEEEEEEECS
T ss_pred HHHHHhCCEEEEEccccccCcCHHHHHHHHHhccccCcccCCCeEEEEEeCC
Confidence 34578899999987654443335566777776542 224678999998874
No 277
>3lcm_A SMU.1420, putative oxidoreductase; NADPH:quinone oxidoreductase, MDAB; HET: FAD NAP; 1.80A {Streptococcus mutans} PDB: 4f8y_A*
Probab=35.47 E-value=89 Score=21.67 Aligned_cols=52 Identities=15% Similarity=0.208 Sum_probs=37.3
Q ss_pred HHHhhhcCCEEEEEEeCCCcccHHHHHHHHHHHHhC------------CCCCCCcEEEEEeCCC
Q 029517 73 WEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRN------------EDLQGAPLLILANKQD 124 (192)
Q Consensus 73 ~~~~~~~~d~ii~v~D~~~~~s~~~~~~~~~~i~~~------------~~~~~~piiiv~nK~D 124 (192)
...-+..+|++|+.+-.-...--..++.|+..+... ....+++++++.+--.
T Consensus 67 ~~~~l~~AD~iV~~~P~y~~~~pa~LK~~iD~v~~~g~~~~~~~~~~~~~l~gK~~~~i~t~g~ 130 (196)
T 3lcm_A 67 YRDLVTWADHLIFIFPIWWSGMPAILKGFIDRVFVADFAYSYKKVGLEGHLQGKSAWIITTHNT 130 (196)
T ss_dssp HHHHHHHCSEEEEEEECBTTBCCHHHHHHHHHHSCBTTTEEECSSSEEESCTTCEEEEEEECSS
T ss_pred HHHHHHhCCEEEEECchhhccccHHHHHHHHHHccCCcceecCCCCcccCCCCCEEEEEEcCCC
Confidence 344578999999999876655556778888888542 1245788888887643
No 278
>2amj_A Modulator of drug activity B; oxidoreductase, menadione, DT-diaphorase, montreal-kingston structural genomics initiative, BSGI; 1.80A {Escherichia coli} PDB: 2b3d_A*
Probab=34.07 E-value=1.2e+02 Score=21.20 Aligned_cols=49 Identities=8% Similarity=0.024 Sum_probs=30.9
Q ss_pred EEEEEeCCCCcccHHHHHHhhhcCCEEEEEEeCCCcccHHHHHHHHHHHH
Q 029517 57 KLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVL 106 (192)
Q Consensus 57 ~~~i~D~~G~~~~~~~~~~~~~~~d~ii~v~D~~~~~s~~~~~~~~~~i~ 106 (192)
.+.+.|.....+... ...-+..+|++|+.+-.-...--..++.|+..+.
T Consensus 49 ~v~~~dL~~~~d~~~-~~~~l~~AD~iV~~~P~y~~s~pa~LK~~iDrv~ 97 (204)
T 2amj_A 49 DVRIVRADSDYDVKA-EVQNFLWADVVIWQMPGWWMGAPWTVKKYIDDVF 97 (204)
T ss_dssp EEEEEESSSCCCHHH-HHHHHHHCSEEEEEEECBTTBCCHHHHHHHHHHH
T ss_pred EEEEEeCCccccHHH-HHHHHHhCCEEEEECCccccCCCHHHHHHHHHHh
Confidence 344444443333333 3446789999999998765554566677877764
No 279
>3ha2_A NADPH-quinone reductase; structural genomics, PSI-2, protein structure initiative, no structural genomics, consortium, NESG; HET: MSE; 1.80A {Pediococcus pentosaceus atcc 25745}
Probab=33.88 E-value=1.1e+02 Score=20.94 Aligned_cols=65 Identities=14% Similarity=0.114 Sum_probs=41.4
Q ss_pred EEEeCCCCcccHHHHHHhhhcCCEEEEEEeCCCcccHHHHHHHHHHHHhC-------CCCCCCcEEEEEeCCC
Q 029517 59 VFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRN-------EDLQGAPLLILANKQD 124 (192)
Q Consensus 59 ~i~D~~G~~~~~~~~~~~~~~~d~ii~v~D~~~~~s~~~~~~~~~~i~~~-------~~~~~~piiiv~nK~D 124 (192)
.+.|.....+.... ..-+..+|++|+.+-.-...--..++.|+..+... ....+++++++.+--.
T Consensus 32 ~v~dL~~~~D~~~~-~~~l~~aD~iV~~~P~y~~~~pa~lK~~iDrv~~~g~~~~~~~~l~gK~~~~~~t~g~ 103 (177)
T 3ha2_A 32 TWHPLVADFNVEQE-QSLLLQNDRIILEFPLYWYSAPALLKQWMDTVMTTKFATGHQYALEGKELGIVVSTGD 103 (177)
T ss_dssp EEEECCTTCCHHHH-HHHHHTCSEEEEEEECBTTBCCHHHHHHHHHHSCHHHHSTTTCTTTTCEEEEEEEESS
T ss_pred EEEECCCcccHHHH-HHHHHhCCEEEEECChhhccCCHHHHHHHHHHhhcccccCCCcCCCCCEEEEEEeCCC
Confidence 34444443333333 44678999999999876555456677788887532 2346788888876543
No 280
>3svl_A Protein YIEF; E. coli CHRR enzyme, chromate bioremediation, tetramer role, mutant enzymes, oxidoreductase; HET: FMN; 2.20A {Escherichia coli}
Probab=33.20 E-value=1.2e+02 Score=21.00 Aligned_cols=51 Identities=25% Similarity=0.242 Sum_probs=33.7
Q ss_pred HHHhhhcCCEEEEEEeCCCcccHHHHHHHHHHHHhC--CCCCCCcEEEEEeCC
Q 029517 73 WEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRN--EDLQGAPLLILANKQ 123 (192)
Q Consensus 73 ~~~~~~~~d~ii~v~D~~~~~s~~~~~~~~~~i~~~--~~~~~~piiiv~nK~ 123 (192)
+..-+..+|++|++.-.-+..-...++.++..+... ....++|+.++++--
T Consensus 66 l~~~i~~AD~iv~~sP~y~~~~~~~lK~~iD~~~~~~~~~~~gK~~~~~~~s~ 118 (193)
T 3svl_A 66 LAEQIRQADGVVIVTPEYNYSVPGGLKNAIDWLSRLPDQPLAGKPVLIQTSSM 118 (193)
T ss_dssp HHHHHHHSSEEEEEECCBTTBCCHHHHHHHHHHHTSTTCTTTTCEEEEEEECS
T ss_pred HHHHHHHCCEEEEEecccCCCCCHHHHHHHHHHhhcCccccCCCeEEEEEeCC
Confidence 445678899999998765444334455566555442 234689999998743
No 281
>3qk7_A Transcriptional regulators; structural genomics, NEW YORK structural genomix research CO NYSGXRC, PSI-2, protein structur initiative; 2.70A {Yersinia pestis}
Probab=32.39 E-value=1.2e+02 Score=22.14 Aligned_cols=60 Identities=13% Similarity=0.073 Sum_probs=31.3
Q ss_pred CEEEEEEeCCCCcccHHHHHHhh-hcCCEEEEEEeCCCcccHHHHHHHHHHHHhCCCCCCCcEEEEEeCCCC
Q 029517 55 NSKLVFWDLGGQPGLRSIWEKYY-EEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDL 125 (192)
Q Consensus 55 ~~~~~i~D~~G~~~~~~~~~~~~-~~~d~ii~v~D~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl 125 (192)
++.+.+.++.+.+.......... +++||+|++-...+. . .+..+.. .++|++++....+.
T Consensus 40 g~~~~~~~~~~~~~~~~~~~~l~~~~vdGiIi~~~~~~~---~----~~~~l~~----~~iPvV~~~~~~~~ 100 (294)
T 3qk7_A 40 GLDLLLIPDEPGEKYQSLIHLVETRRVDALIVAHTQPED---F----RLQYLQK----QNFPFLALGRSHLP 100 (294)
T ss_dssp TCEEEEEEECTTCCCHHHHHHHHHTCCSEEEECSCCSSC---H----HHHHHHH----TTCCEEEESCCCCS
T ss_pred CCEEEEEeCCChhhHHHHHHHHHcCCCCEEEEeCCCCCh---H----HHHHHHh----CCCCEEEECCCCCC
Confidence 45555555554333333333333 479998876432222 1 1222222 37899988876543
No 282
>3fkq_A NTRC-like two-domain protein; RER070207001320, structural GE joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: ATP 2PE; 2.10A {Eubacterium rectale}
Probab=32.20 E-value=54 Score=25.47 Aligned_cols=35 Identities=20% Similarity=0.084 Sum_probs=26.2
Q ss_pred cCEEEEEEeCCCCcccHHHHHHhhhcCCEEEEEEeCC
Q 029517 54 SNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAA 90 (192)
Q Consensus 54 ~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ii~v~D~~ 90 (192)
..+.+.|+|+|.... ......+..||.+++|..++
T Consensus 258 ~~yD~VIID~p~~~~--~~~~~~l~~aD~vivv~~~~ 292 (373)
T 3fkq_A 258 DNYDEIIVDLPFSLE--IEKLKLLSKAWRIIVVNDGS 292 (373)
T ss_dssp SCCSEEEEECCCCCC--HHHHHHHTTCSEEEEEECCC
T ss_pred CCCCEEEEeCCCCCC--HHHHHHHHHCCEEEEEecCC
Confidence 357899999996543 23445678899999999775
No 283
>2ark_A Flavodoxin; FMN, structural genomics, PSI, structure initiative, midwest center for structural genomic electron transport; 2.40A {Aquifex aeolicus} SCOP: c.23.5.8
Probab=32.15 E-value=1.2e+02 Score=20.64 Aligned_cols=63 Identities=8% Similarity=0.015 Sum_probs=40.7
Q ss_pred EEEEEEeCCCCcccHHHHHHhhhcCCEEEEEEeCCCcccHHHHHHHHHHHHhC--CCCCCCcEEEEEeCCC
Q 029517 56 SKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRN--EDLQGAPLLILANKQD 124 (192)
Q Consensus 56 ~~~~i~D~~G~~~~~~~~~~~~~~~d~ii~v~D~~~~~s~~~~~~~~~~i~~~--~~~~~~piiiv~nK~D 124 (192)
+.+.+.|..... ..-+..+|++|+..-.-...-...+..++..+... ....++|+.++++--.
T Consensus 35 ~~v~~~~l~~~~------~~~l~~aD~ii~gsP~y~g~~~~~lk~fld~~~~~~~~~l~gk~~~~~~t~g~ 99 (188)
T 2ark_A 35 TEVRLKHVDEAT------KEDVLWADGLAVGSPTNMGLVSWKMKRFFDDVLGDLWGEIDGKIACAFSSSGG 99 (188)
T ss_dssp EEEEEEETTTCC------HHHHHHCSEEEEEEECBTTBCCHHHHHHHHHTGGGTTTSCTTCEEEEEEEESS
T ss_pred CeEEEEEhhhCC------HHHHHhCCEEEEEeCccCCcCCHHHHHHHHHHhhhhHHHhCCCeEEEEEECCC
Confidence 445556655432 23467899999999776555456677777776541 2236789998888543
No 284
>3gv0_A Transcriptional regulator, LACI family; transcription regulator, PSI-II, structural genomics structure initiative; 2.35A {Agrobacterium tumefaciens str}
Probab=31.78 E-value=77 Score=23.02 Aligned_cols=60 Identities=10% Similarity=-0.032 Sum_probs=30.8
Q ss_pred CEEEEEEeCCCCccc-HHHHHHhh-hcCCEEEEEEeCCCcccHHHHHHHHHHHHhCCCCCCCcEEEEEeCCCC
Q 029517 55 NSKLVFWDLGGQPGL-RSIWEKYY-EEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDL 125 (192)
Q Consensus 55 ~~~~~i~D~~G~~~~-~~~~~~~~-~~~d~ii~v~D~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl 125 (192)
++.+.+.++.+...- ........ +++||+|++ ...... . .+..+.+ .++|++++.+..+.
T Consensus 40 g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~-~~~~~~--~----~~~~l~~----~~iPvV~i~~~~~~ 101 (288)
T 3gv0_A 40 QYHLVVTPHIHAKDSMVPIRYILETGSADGVIIS-KIEPND--P----RVRFMTE----RNMPFVTHGRSDMG 101 (288)
T ss_dssp SCEEEECCBSSGGGTTHHHHHHHHHTCCSEEEEE-SCCTTC--H----HHHHHHH----TTCCEEEESCCCSS
T ss_pred CCEEEEecCCcchhHHHHHHHHHHcCCccEEEEe-cCCCCc--H----HHHHHhh----CCCCEEEECCcCCC
Confidence 456666665553322 22222222 679999875 322221 1 1222222 37999988876543
No 285
>1s2d_A Purine trans deoxyribosylase; ribosylate intermediate, PTD, ARAA, transferase; HET: AR4 ADE; 2.10A {Lactobacillus helveticus} SCOP: c.23.14.1 PDB: 1s2g_A* 1s2i_A* 1s2l_A 1s3f_A*
Probab=30.92 E-value=1.3e+02 Score=20.59 Aligned_cols=39 Identities=15% Similarity=0.123 Sum_probs=24.0
Q ss_pred hhhcCCEEEEEEeCCCcccHHHHHHHHHHHHhCCCCCCCcEEEEE
Q 029517 76 YYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILA 120 (192)
Q Consensus 76 ~~~~~d~ii~v~D~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~ 120 (192)
.++.||++|.++|...+++=.. .+. - .... .++|++++-
T Consensus 78 ~i~~aD~vVA~ldg~~~D~GTa-~Ei-G-yA~a---lgKPVv~l~ 116 (167)
T 1s2d_A 78 GISNATCGVFLYDMDQLDDGSA-FXI-G-FMRA---MHKPVILVP 116 (167)
T ss_dssp HHHHCSEEEEEEESSSCCHHHH-HHH-H-HHHH---TTCCEEEEE
T ss_pred HHHhCCEEEEECCCCCCCCCce-eeh-h-hHhh---CCCeEEEEE
Confidence 4789999999999765542221 111 1 1111 479998884
No 286
>3ug7_A Arsenical pump-driving ATPase; tail-anchored, membrane protein, targeting factor, ATP-bindi TRC40, ARSA, nucleotide-binding; HET: ADP; 2.90A {Methanocaldococcus jannaschii} PDB: 3ug6_A*
Probab=30.85 E-value=1.8e+02 Score=22.25 Aligned_cols=82 Identities=13% Similarity=0.247 Sum_probs=46.3
Q ss_pred CCEEEEEEeCCCcccHHHHHHHHHHHHhCCCCCCCcE-EEEEeCCCCCCCCC-------------HHHHHhHcCccccCC
Q 029517 80 AHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPL-LILANKQDLPDAVS-------------ADELARYLDLKKLDE 145 (192)
Q Consensus 80 ~d~ii~v~D~~~~~s~~~~~~~~~~i~~~~~~~~~pi-iiv~nK~Dl~~~~~-------------~~~~~~~~~~~~~~~ 145 (192)
.+++++|.-+. .-+..++...+..+.+. ++|+ -+|.|++....... .+++.+.+. .
T Consensus 237 ~~~~vlV~~p~-~~~~~e~~r~~~~l~~~----~i~v~gvV~N~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~~-----~ 306 (349)
T 3ug7_A 237 RTAFRLVVIPE-EMSILESERAMKALQKY----GIPIDAVIVNQLIPEDVQCDFCRARRELQLKRLEMIKEKFG-----D 306 (349)
T ss_dssp TEEEEEEECSS-HHHHHHHHHHHHHHHHT----TCCEEEEEEEEECCSCCCSHHHHHHHHHHHHHHHHHHHHST-----T
T ss_pred CceEEEEECCC-ccHHHHHHHHHHHHHHC----CCCeeEEEEcCCccccCCCchHHHHHHHHHHHHHHHHHHcC-----C
Confidence 46788888764 44567777777766654 4555 66889997542100 112222222 3
Q ss_pred cceEEEEeeecCCCCHHHHHHHHHHHH
Q 029517 146 RVCMFEAVSGYDGFGIKESVEWLVEVM 172 (192)
Q Consensus 146 ~~~~~~~~Sa~~~~gi~e~~~~i~~~i 172 (192)
...-.++.....-.|++.+- .+.+.+
T Consensus 307 ~~l~~iPl~~~e~~g~~~L~-~~~~~l 332 (349)
T 3ug7_A 307 KVIAYVPLLRTEAKGIETLK-QIAKIL 332 (349)
T ss_dssp SEEEEEECCSSCSCSHHHHH-HHHHHH
T ss_pred CcEEEecCCCCCCCCHHHHH-HHHHHH
Confidence 34455566677777876653 333433
No 287
>3f2v_A General stress protein 14; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: FMN; 2.00A {Treponema denticola}
Probab=30.48 E-value=1.3e+02 Score=20.88 Aligned_cols=51 Identities=18% Similarity=0.148 Sum_probs=36.6
Q ss_pred HHhhhcCCEEEEEEeCCCcccHHHHHHHHHHHHhC--------CCCCCCcEEEEEeCCC
Q 029517 74 EKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRN--------EDLQGAPLLILANKQD 124 (192)
Q Consensus 74 ~~~~~~~d~ii~v~D~~~~~s~~~~~~~~~~i~~~--------~~~~~~piiiv~nK~D 124 (192)
..-+..+|++|+.+-.-...--..++.|+..+... ....+++++++.+--.
T Consensus 53 ~~~l~~AD~iv~~~P~y~~~~pa~lK~~iDrv~~~g~~y~~~g~~l~gK~~~~~~t~G~ 111 (192)
T 3f2v_A 53 QKLIETHDSLVWQFPIYWFNCPPLLKQWLDEVLTYGWAYGSKGKALKGRKIALAVSLGA 111 (192)
T ss_dssp HHHHHTSSSEEEEEECBTTBCCHHHHHHHHHHSCBTTTBSSSCCSSTTCEEEEEEEESS
T ss_pred HHHHHhCCEEEEEcChhhcCCCHHHHHHHHHHhhcCccccCCCCCCCCCEEEEEEeCCC
Confidence 44578999999999876555556777898888542 2345788888776543
No 288
>3hyn_A Putative signal transduction protein; DUF1863 family protein, nucleotide-binding protein, structur genomics; HET: MSE; 1.20A {Eubacterium rectale atcc 33656}
Probab=30.47 E-value=1.4e+02 Score=21.06 Aligned_cols=60 Identities=7% Similarity=0.205 Sum_probs=35.5
Q ss_pred EEEeCCC-CcccHHHHHHhhhcCCEEEEEEeCCCcccHHHHHHHHHHHHhCCCCCCCcEEEEEeC
Q 029517 59 VFWDLGG-QPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANK 122 (192)
Q Consensus 59 ~i~D~~G-~~~~~~~~~~~~~~~d~ii~v~D~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK 122 (192)
.+.|+.. .+........-++++..+|+++...-..+- .+.-.++... +..++|||+|--.
T Consensus 58 ~vrDsS~~e~tIKrrLReRI~~Sk~vIllIs~~T~~s~-~v~wEIe~Ai---~~~~~PII~Vy~~ 118 (189)
T 3hyn_A 58 NVRDGSDWEKTLKPRLHTRLDNSKNIILFLSSITANSR-ALREEMNYGI---GTKGLPVIVIYPD 118 (189)
T ss_dssp CTTSCCCTTTTHHHHHHHHHHTEEEEEEECCTTCCCCH-HHHHHHHHHT---TTTCCCEEEEETT
T ss_pred cccccccHHHHHHHHHHHHHHhcCcEEEEEecCccccc-hhHHHHHHHH---HhcCCcEEEEECC
Confidence 4466666 444455566678899999888865444332 2223333332 1258999988754
No 289
>2nx2_A Hypothetical protein YPSA; structural genomics, unknown function, PSI, protein structure initiative; 2.00A {Bacillus subtilis} SCOP: c.129.1.2
Probab=30.11 E-value=80 Score=21.94 Aligned_cols=18 Identities=6% Similarity=0.327 Sum_probs=12.5
Q ss_pred HHhhhcCCEEEEEEeCCC
Q 029517 74 EKYYEEAHAVVFVIDAAC 91 (192)
Q Consensus 74 ~~~~~~~d~ii~v~D~~~ 91 (192)
...+..+|++|.+||...
T Consensus 125 ~~mvd~sD~liavyDg~~ 142 (181)
T 2nx2_A 125 QFFIDKSDGLLLLYDPEK 142 (181)
T ss_dssp HHHHHHSSEEEEECCTTT
T ss_pred HHHHHHCCEEEEEEcCCC
Confidence 334677888888888544
No 290
>2vzf_A NADH-dependent FMN reductase; oxidoreductase; 2.50A {Edta-degrading bacterium BNC1} PDB: 2vzh_A* 2vzj_A*
Probab=29.51 E-value=1.4e+02 Score=20.53 Aligned_cols=47 Identities=19% Similarity=0.042 Sum_probs=31.0
Q ss_pred HHhhhcCCEEEEEEeCCCcccHHHHHHHHHHHHhCCCCCCCcEEEEEe
Q 029517 74 EKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILAN 121 (192)
Q Consensus 74 ~~~~~~~d~ii~v~D~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~n 121 (192)
...+..+|++|++.-.-...-...++.++..+.. ....++|+.++++
T Consensus 64 ~~~i~~aD~ii~~sP~y~~~~p~~lK~~ld~l~~-~~~~gK~~~~~~t 110 (197)
T 2vzf_A 64 VDATCNADGLIVATPIYKASYTGLLKAFLDILPQ-FALAGKAALPLAT 110 (197)
T ss_dssp HHHHHHCSEEEEEEECBTTBCCHHHHHHHTTSCT-TTTTTCEEEEEEE
T ss_pred HHHHHHCCEEEEEeCccCCCCCHHHHHHHHhccc-cccCCCEEEEEEE
Confidence 3457889999999977554433444555554432 2346889999998
No 291
>1d4a_A DT-diaphorase, quinone reductase; flavoprotein, rossman fold, oxidoreductase; HET: FAD; 1.70A {Homo sapiens} SCOP: c.23.5.3 PDB: 1dxo_A* 1gg5_A* 1kbo_A* 1kbq_A* 2f1o_A* 3jsx_A* 1h69_A* 1h66_A* 1qbg_A* 1dxq_A* 1qrd_A*
Probab=27.94 E-value=1e+02 Score=22.74 Aligned_cols=49 Identities=14% Similarity=0.068 Sum_probs=35.7
Q ss_pred hhhcCCEEEEEEeCCCcccHHHHHHHHHHHHhC------------CCCCCCcEEEEEeCCC
Q 029517 76 YYEEAHAVVFVIDAACPSRFEDSKTALEKVLRN------------EDLQGAPLLILANKQD 124 (192)
Q Consensus 76 ~~~~~d~ii~v~D~~~~~s~~~~~~~~~~i~~~------------~~~~~~piiiv~nK~D 124 (192)
-+..+|++|+.+-.-...--..++.|+..+... ....+++++++.+--.
T Consensus 90 ~l~~AD~IV~~~P~y~~s~Pa~LK~~iDrv~~~g~~f~~~~~~~~g~l~gK~~~~i~t~Gg 150 (273)
T 1d4a_A 90 KLEAADLVIFQFPLQWFGVPAILKGWFERVFIGEFAYTYAAMYDKGPFRSKKAVLSITTGG 150 (273)
T ss_dssp HHHHCSEEEEEEECBTTBCCHHHHHHHHHHSCBTTTBCTTSCGGGSTTTTCEEEEEEECSS
T ss_pred HHHhCCEEEEECchhhccCCHHHHHHHHHHHhcCcccccCCCCCccccCCCEEEEEEeCCC
Confidence 478899999999876555556777888888642 1235788888887554
No 292
>1t5b_A Acyl carrier protein phosphodiesterase; structural genomics, FMN, alpha/beta/alpha sandwich, PSI, protein structure initiative; HET: FMN; 1.40A {Salmonella typhimurium} SCOP: c.23.5.3 PDB: 1tik_A 2z98_A* 2d5i_A* 1v4b_A* 2z9b_A* 2z9c_A* 2z9d_A*
Probab=27.79 E-value=1.2e+02 Score=20.54 Aligned_cols=50 Identities=10% Similarity=0.070 Sum_probs=34.5
Q ss_pred HHhhhcCCEEEEEEeCCCcccHHHHHHHHHHHHhC------------CCCCCCcEEEEEeCC
Q 029517 74 EKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRN------------EDLQGAPLLILANKQ 123 (192)
Q Consensus 74 ~~~~~~~d~ii~v~D~~~~~s~~~~~~~~~~i~~~------------~~~~~~piiiv~nK~ 123 (192)
..-+..+|++|+..-.-...--..++.|+..+... ....++|+.++.+--
T Consensus 81 ~~~l~~aD~iv~~~P~y~~~~p~~lK~~iD~~~~~~~~~~~~~~~~~~~l~~K~~~~i~t~g 142 (201)
T 1t5b_A 81 IAELKAHDVIVIAAPMYNFNIPTQLKNYFDLIARAGITFRYTEKGPEGLVTGKRAVVLSSRG 142 (201)
T ss_dssp HHHHHHCSEEEEECCCBTTBCCHHHHHHHHHHCCBTTTEEEETTEEEESSCSCEEEEEEECS
T ss_pred HHHHHhCCEEEEEeCcccCcCCHHHHHHHHHheeCCCceecCCCCCccCCCCCeEEEEEecC
Confidence 34577899999998765544445677788887632 123678988888744
No 293
>1t0i_A YLR011WP; FMN binding protein, flavodoxin, azoreductase, oxidoreductase; HET: FMN; 2.00A {Saccharomyces cerevisiae} SCOP: c.23.5.4
Probab=25.46 E-value=1.4e+02 Score=20.19 Aligned_cols=48 Identities=19% Similarity=0.367 Sum_probs=32.6
Q ss_pred HHHHhhhcCCEEEEEEeCCCcccHHHHHHHHHHHHhCCCCCCCcEEEEEe
Q 029517 72 IWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILAN 121 (192)
Q Consensus 72 ~~~~~~~~~d~ii~v~D~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~n 121 (192)
.+..-+..+|++|+..-.-...-...++.|+..+.. ...++|+.++.+
T Consensus 77 ~~~~~l~~aD~iI~~sP~y~~~~p~~lK~~iD~~~~--~l~gK~~~~~~~ 124 (191)
T 1t0i_A 77 SWSRIVNALDIIVFVTPQYNWGYPAALKNAIDRLYH--EWHGKPALVVSY 124 (191)
T ss_dssp HHHHHHHTCSEEEEEEECBTTBCCHHHHHHHHTCST--TTTTCEEEEEEE
T ss_pred HHHHHHHhCCEEEEEeceECCCCCHHHHHHHHHHHh--hcCCCEEEEEEe
Confidence 344567899999999987655444556667666543 235788887765
No 294
>1sqs_A Conserved hypothetical protein; structural genomics, alpha beta protein, PSI, protein struct initiative; HET: TLA; 1.50A {Streptococcus pneumoniae} SCOP: c.23.5.5 PDB: 2oys_A*
Probab=25.11 E-value=1.9e+02 Score=20.62 Aligned_cols=51 Identities=16% Similarity=0.094 Sum_probs=34.1
Q ss_pred HHHhhhcCCEEEEEEeCCCcccHHHHHHHHHHHHhC---CCCCCCcEEEEEeCC
Q 029517 73 WEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRN---EDLQGAPLLILANKQ 123 (192)
Q Consensus 73 ~~~~~~~~d~ii~v~D~~~~~s~~~~~~~~~~i~~~---~~~~~~piiiv~nK~ 123 (192)
...-+..+|++|+..-.-...-...+..|+..+... ....++|++++++-.
T Consensus 73 ~~~~l~~AD~iI~~sP~y~~~~p~~lK~~iDr~~~~~~~~~l~gK~~~~i~t~g 126 (242)
T 1sqs_A 73 IKKELLESDIIIISSPVYLQNVSVDTKNFIERIGGWSHLFRLAGKFVVTLDVAE 126 (242)
T ss_dssp HHHHHHHCSEEEEEEEECSSSCCHHHHHHHHHTGGGTTTTTTTTCEEEEEEEES
T ss_pred HHHHHHHCCEEEEEccccccCCCHHHHHHHHHHHHhccccccCCCEEEEEEeCC
Confidence 344578999999999776555455666777776321 123578888877653
No 295
>3r6w_A FMN-dependent NADH-azoreductase 1; nitrofurazone, P. aeruginosa, nitroreductase, flavodoxin, oxidoreductase; HET: FMN NFZ; 2.08A {Pseudomonas aeruginosa} PDB: 3lt5_A* 2v9c_A* 3keg_A*
Probab=23.87 E-value=1.7e+02 Score=20.36 Aligned_cols=50 Identities=16% Similarity=0.104 Sum_probs=35.7
Q ss_pred HHhhhcCCEEEEEEeCCCcccHHHHHHHHHHHHhC----------------CCCCCCcEEEEEeCC
Q 029517 74 EKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRN----------------EDLQGAPLLILANKQ 123 (192)
Q Consensus 74 ~~~~~~~d~ii~v~D~~~~~s~~~~~~~~~~i~~~----------------~~~~~~piiiv~nK~ 123 (192)
..-+..+|++|+..-.-...--..++.|+..+... ....+++++++.+--
T Consensus 82 ~~~l~~AD~iV~~~P~y~~~~pa~lK~~iD~~~~~g~~f~~~~~~g~~~~~~~l~gK~~~~i~t~g 147 (212)
T 3r6w_A 82 VGELFDSDLLVISTPMYNFSVPSGLKAWIDQIVRLGVTFDFVLDNGVAQYRPLLRGKRALIVTSRG 147 (212)
T ss_dssp HHHHHHCSEEEEEEECBTTBCCHHHHHHHHHHCCBTTTEEEEECC-CEEEEECCCSCEEEEEEECS
T ss_pred HHHHHhCCEEEEEcCcccccCCHHHHHHHHHHhhCCceeecccCCCCccccccCCCCEEEEEEecC
Confidence 34578899999999876655556777888888432 124578888887755
No 296
>3tem_A Ribosyldihydronicotinamide dehydrogenase [quinone; oxidoreductase-oxidoreductase inhibitor complex; HET: FAD 6A1 IMD; 1.45A {Homo sapiens} SCOP: c.23.5.3 PDB: 3te7_A* 3tzb_A* 3fw1_A* 2qwx_A* 1zx1_A* 3g5m_A* 3gam_A* 3ovm_A* 3owh_A* 3owx_A* 3ox1_A* 3ox2_A* 3ox3_A* 1sg0_A* 1qr2_A* 1xi2_A* 2qmy_A* 2qmz_A* 2qr2_A* 2qx4_A* ...
Probab=23.65 E-value=2e+02 Score=20.48 Aligned_cols=52 Identities=25% Similarity=0.145 Sum_probs=36.7
Q ss_pred HHhhhcCCEEEEEEeCCCcccHHHHHHHHHHHHhC------------CCCCCCcEEEEEeCCCC
Q 029517 74 EKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRN------------EDLQGAPLLILANKQDL 125 (192)
Q Consensus 74 ~~~~~~~d~ii~v~D~~~~~s~~~~~~~~~~i~~~------------~~~~~~piiiv~nK~Dl 125 (192)
...+..+|++|+.+-.-...--..++.|+..+... ....+++++++.+--.-
T Consensus 87 ~~~l~~aD~iv~~~P~y~~~~p~~lK~~iD~~~~~g~~~~~~~~~~~~~l~gK~~~~~~T~g~~ 150 (228)
T 3tem_A 87 QKKVREADLVIFQFPLYWFSVPAILKGWMDRVLCQGFAFDIPGFYDSGLLQGKLALLSVTTGGT 150 (228)
T ss_dssp HHHHHHCSEEEEEEECBTTBCCHHHHHHHHHHSCBTTTBCSSCCGGGCTTTTCEEEEEEECSSC
T ss_pred HHHHHhCCEEEEECChhhcccCHHHHHHHHHHhhcCcccccCCCCCCCCCCCCEEEEEEeCCCC
Confidence 33478899999999876555556677888887542 23467888888876543
No 297
>1eiw_A Hypothetical protein MTH538; CHEY-like fold, flavodoxin-like fold, (A/B)5 doubly wound fold, parallel beta sheet; NMR {Methanothermobacterthermautotrophicus} SCOP: c.23.3.1
Probab=23.18 E-value=1.1e+02 Score=19.40 Aligned_cols=43 Identities=14% Similarity=0.161 Sum_probs=25.2
Q ss_pred HhhhcCCEEEEEEeCCCcccHHHHHHHHHHHHhCCCCCCCcEEEEEeC
Q 029517 75 KYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANK 122 (192)
Q Consensus 75 ~~~~~~d~ii~v~D~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK 122 (192)
.-++.|+++|++++..... =.-+...+....+ .++|++.|--.
T Consensus 34 ~~I~~~~~vIvL~G~~t~~-s~wv~~EI~~A~~----~gkpIigV~~~ 76 (111)
T 1eiw_A 34 ATPEDADAVIVLAGLWGTR-RDEILGAVDLARK----SSKPIITVRPY 76 (111)
T ss_dssp CCSSSCSEEEEEGGGTTTS-HHHHHHHHHHHTT----TTCCEEEECCS
T ss_pred CccccCCEEEEEeCCCcCC-ChHHHHHHHHHHH----cCCCEEEEEcC
Confidence 4578899999999865332 1223333333222 47898876543
No 298
>1vf6_A PALS-1, PALS1-associated tight junction protein; L27 domain, heterodimer, four-helical bundle, coiled-coil, hydrophobic packing interactions; 2.10A {Homo sapiens} SCOP: a.194.1.1
Probab=23.16 E-value=40 Score=20.24 Aligned_cols=17 Identities=12% Similarity=0.311 Sum_probs=14.4
Q ss_pred HHHhhhhccccHHHHHH
Q 029517 7 GLWKYIFTKTEFHTLLE 23 (192)
Q Consensus 7 ~~~~~~~kst~~~~l~~ 23 (192)
++.|..-||.+||-+++
T Consensus 29 s~lk~~LqSPLF~qILt 45 (83)
T 1vf6_A 29 SMFYETLKSPLFNQILT 45 (83)
T ss_dssp HHHHHHHHCHHHHHHHH
T ss_pred HHHHHHHhCHHHHHHHH
Confidence 57889999999997765
No 299
>2khz_A C-MYC-responsive protein RCL; flexible loop, nucleus, phosphoprotein, nuclear protein; NMR {Rattus norvegicus} PDB: 2klh_A*
Probab=22.49 E-value=1.3e+02 Score=20.41 Aligned_cols=42 Identities=19% Similarity=0.166 Sum_probs=26.1
Q ss_pred HhhhcCCEEEEEEeCCCcccHHHHHHHHHHHHhCCCCCCCcEEEEEeCCC
Q 029517 75 KYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQD 124 (192)
Q Consensus 75 ~~~~~~d~ii~v~D~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~D 124 (192)
..++.||++|..+|..+. ....+.= +... .++|++++.+..+
T Consensus 73 ~~i~~aD~vva~~~~~d~---Gt~~EiG--yA~a---lgKPVi~l~~~~~ 114 (165)
T 2khz_A 73 NWLQQADVVVAEVTQPSL---GVGYELG--RAVA---LGKPILCLFRPQS 114 (165)
T ss_dssp HHHHHCSEEEEECSSCCH---HHHHHHH--HHHH---TCSSEEEEECTTT
T ss_pred HHHHhCCEEEEECCCCCC---CHHHHHH--HHHH---CCCEEEEEEcCCC
Confidence 468899999998873333 2222221 1111 4799999877664
No 300
>2hpv_A FMN-dependent NADH-azoreductase; structural genomics, PS protein structure initiative, southeast collaboratory for S genomics, secsg; HET: FMN; 2.00A {Enterococcus faecalis}
Probab=22.27 E-value=1.9e+02 Score=19.78 Aligned_cols=49 Identities=12% Similarity=-0.008 Sum_probs=34.2
Q ss_pred HhhhcCCEEEEEEeCCCcccHHHHHHHHHHHHhCC------------CCCCCcEEEEEeCC
Q 029517 75 KYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNE------------DLQGAPLLILANKQ 123 (192)
Q Consensus 75 ~~~~~~d~ii~v~D~~~~~s~~~~~~~~~~i~~~~------------~~~~~piiiv~nK~ 123 (192)
.-+..+|++|+..-.-...--..++.|+..+.... ...+++++++.+--
T Consensus 90 ~~l~~aD~iv~~~P~y~~~~pa~lK~~iD~~~~~g~~~~~~~~~~~~~l~gK~~~~i~t~g 150 (208)
T 2hpv_A 90 DQFLSADKVVIANPMWNLNVPTRLKAWVDTINVAGKTFQYTAEGPKPLTSGKKALHIQSNG 150 (208)
T ss_dssp HHHHHCSEEEEEEECBTTBCCHHHHHHHHHHCCBTTTEEEETTEEEESCCSCEEEEEEEES
T ss_pred HHHHhCCEEEEEeccccCCCCHHHHHHHHHHhcCCcEeecCCCCCccCCCCCeEEEEEecC
Confidence 34678999999998765555567778888876421 13578888887633
No 301
>3v7e_A Ribosome-associated protein L7AE-like; RNA-protein complex, K-turn, L7AE-like, A member L7AE/L30E superfamily; HET: SAM; 2.80A {Bacillus subtilis}
Probab=22.25 E-value=77 Score=18.71 Aligned_cols=47 Identities=11% Similarity=0.131 Sum_probs=28.8
Q ss_pred HHHhhhcCCEEEEEEeCCCcccHHHHHHHHHHHHhCCCCCCCcEEEEEeCCCC
Q 029517 73 WEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDL 125 (192)
Q Consensus 73 ~~~~~~~~d~ii~v~D~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl 125 (192)
....+++-.+-++++..+.+. ++...+..+... .++|++.+.+|.+|
T Consensus 19 v~kai~~gkaklViiA~D~~~---~~~~~i~~lc~~---~~Ip~~~v~sk~eL 65 (82)
T 3v7e_A 19 TVKALKRGSVKEVVVAKDADP---ILTSSVVSLAED---QGISVSMVESMKKL 65 (82)
T ss_dssp HHHHHTTTCEEEEEEETTSCH---HHHHHHHHHHHH---HTCCEEEESCHHHH
T ss_pred HHHHHHcCCeeEEEEeCCCCH---HHHHHHHHHHHH---cCCCEEEECCHHHH
Confidence 444566666666666544332 344555555555 57999998887664
No 302
>3jy6_A Transcriptional regulator, LACI family; NYSGXRC, PSI-II, protein S initiative, structural genomics; 1.97A {Lactobacillus brevis}
Probab=22.21 E-value=1.5e+02 Score=21.12 Aligned_cols=59 Identities=10% Similarity=0.164 Sum_probs=32.7
Q ss_pred CEEEEEEeCCCCcccH-HHHHHh-hhcCCEEEEEEeCCCcccHHHHHHHHHHHHhCCCCCCCcEEEEEeCCCC
Q 029517 55 NSKLVFWDLGGQPGLR-SIWEKY-YEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDL 125 (192)
Q Consensus 55 ~~~~~i~D~~G~~~~~-~~~~~~-~~~~d~ii~v~D~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl 125 (192)
++.+.+.++.+...-. ...... -+++||+|++-... . ..+..+.+ .++|++++....+.
T Consensus 37 g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~~-----~---~~~~~l~~----~~iPvV~i~~~~~~ 97 (276)
T 3jy6_A 37 GYIGVLFDANADIEREKTLLRAIGSRGFDGLILQSFSN-----P---QTVQEILH----QQMPVVSVDREMDA 97 (276)
T ss_dssp TCEEEEEECTTCHHHHHHHHHHHHTTTCSEEEEESSCC-----H---HHHHHHHT----TSSCEEEESCCCTT
T ss_pred CCEEEEEeCCCCHHHHHHHHHHHHhCCCCEEEEecCCc-----H---HHHHHHHH----CCCCEEEEecccCC
Confidence 5677777777654222 222222 25789988764322 2 23333332 37899998876653
No 303
>1rli_A Trp repressor binding protein; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 1.80A {Bacillus subtilis} SCOP: c.23.5.6
Probab=21.91 E-value=1.4e+02 Score=19.97 Aligned_cols=50 Identities=8% Similarity=0.013 Sum_probs=32.5
Q ss_pred HHhhhcCCEEEEEEeCCCcccHHHHHHHHHHHHhCC----------CCCCCcEEEEEeCC
Q 029517 74 EKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNE----------DLQGAPLLILANKQ 123 (192)
Q Consensus 74 ~~~~~~~d~ii~v~D~~~~~s~~~~~~~~~~i~~~~----------~~~~~piiiv~nK~ 123 (192)
..-+..+|++|+..-.-...-...++.|+..+.... ...++|+.++.+--
T Consensus 66 ~~~l~~aD~ii~~~P~y~~~~p~~lK~~iD~~~~~~~~~~~~~~~~~l~~K~~~~i~t~g 125 (184)
T 1rli_A 66 IERILQCHILIFATPIYWFGMSGTLKLFIDRWSQTLRDPRFPDFKQQMSVKQAYVIAVGG 125 (184)
T ss_dssp HHHHHTCSEEEEEEECBTTBCCHHHHHHHHTHHHHTTCTTSTTHHHHHHTSEEEEEEEES
T ss_pred HHHHHhCCEEEEEeCccccCCcHHHHHHHHHhHHhccCccccccccccCCCeEEEEEeCC
Confidence 345789999999998765544455666666654211 12468888888743
No 304
>1f8y_A Nucleoside 2-deoxyribosyltransferase; active site, alpha/beta protein, biocatalyst, X- RAY crystallography; HET: 5MD; 2.40A {Lactobacillus leichmannii} SCOP: c.23.14.1 PDB: 1f8x_A*
Probab=21.82 E-value=1.4e+02 Score=20.16 Aligned_cols=43 Identities=9% Similarity=-0.045 Sum_probs=25.5
Q ss_pred HhhhcCCEEEEEEeCCCcccHHHHHHHHHHHHhCCCCCCCcEEEEEeCC
Q 029517 75 KYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQ 123 (192)
Q Consensus 75 ~~~~~~d~ii~v~D~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~ 123 (192)
..++.||++|.++|..++++ -...+. - .... .++|++++..+-
T Consensus 74 ~~i~~aD~vvA~ldg~~~D~-GT~~Ei-G-yA~A---~gkPVv~~~~~~ 116 (157)
T 1f8y_A 74 NGIKTNDIMLGVYIPDEEDV-GLGMEL-G-YALS---QGKYVLLVIPDE 116 (157)
T ss_dssp HHHHTSSEEEEECCGGGCCH-HHHHHH-H-HHHH---TTCEEEEEECGG
T ss_pred HHHHhCCEEEEEcCCCCCCc-cHHHHH-H-HHHH---CCCeEEEEEcCC
Confidence 35789999999998654432 221111 1 1111 479998887554
No 305
>3ehd_A Uncharacterized conserved protein; PSI,MCSG,PF05014, structural genomics, protein structure INI midwest center for structural genomics; HET: MSE; 2.15A {Enterococcus faecalis}
Probab=21.15 E-value=1.9e+02 Score=19.69 Aligned_cols=43 Identities=14% Similarity=0.138 Sum_probs=25.2
Q ss_pred HhhhcCCEEEEEEeCCCcccHHHHHHHHHHHHhCCCCCCCcEEEEEeCC
Q 029517 75 KYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQ 123 (192)
Q Consensus 75 ~~~~~~d~ii~v~D~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~ 123 (192)
..++.||++|.++|...+++=.. -+. -.... .++|++++.+-.
T Consensus 65 ~~i~~aD~viA~ldg~~~D~Gt~-~Ei--G~A~a---~gkPVi~~~~D~ 107 (162)
T 3ehd_A 65 ENVLASDLLVALLDGPTIDAGVA-SEI--GVAYA---KGIPVVALYTDS 107 (162)
T ss_dssp HHHHTCSEEEEECCSSSCCHHHH-HHH--HHHHH---TTCCEEEECCCG
T ss_pred HHHHHCCEEEEECCCCCCCCCHH-HHH--HHHHH---CCCEEEEEEcCc
Confidence 35789999999998653332111 111 11111 478988876654
No 306
>3hcw_A Maltose operon transcriptional repressor; RNA-binding, PSI-2, NYSGXRC, STRU genomics, protein structure initiative; 2.20A {Staphylococcus aureus subsp}
Probab=20.49 E-value=1.1e+02 Score=22.23 Aligned_cols=60 Identities=5% Similarity=0.081 Sum_probs=30.0
Q ss_pred CEEEEEEeCCCCccc-HHHHHHhh-hcCCEEEEEEeCCCcccHHHHHHHHHHHHhCCCCCCCcEEEEEeCCCC
Q 029517 55 NSKLVFWDLGGQPGL-RSIWEKYY-EEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDL 125 (192)
Q Consensus 55 ~~~~~i~D~~G~~~~-~~~~~~~~-~~~d~ii~v~D~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl 125 (192)
++.+.+.++.+.... ........ +++||+|++-...+. . .+..+.. .++|++++.+..+.
T Consensus 42 g~~~~~~~~~~~~~~~~~~~~~l~~~~vdGiI~~~~~~~~----~---~~~~l~~----~~iPvV~i~~~~~~ 103 (295)
T 3hcw_A 42 GYGTQTTVSNNMNDLMDEVYKMIKQRMVDAFILLYSKEND----P---IKQMLID----ESMPFIVIGKPTSD 103 (295)
T ss_dssp TCEEEECCCCSHHHHHHHHHHHHHTTCCSEEEESCCCTTC----H---HHHHHHH----TTCCEEEESCCCSS
T ss_pred CCEEEEEcCCCChHHHHHHHHHHHhCCcCEEEEcCcccCh----H---HHHHHHh----CCCCEEEECCCCcc
Confidence 455666655443221 12222222 579999886322111 1 1222222 47999998876653
No 307
>2fz5_A Flavodoxin; alpha/beta doubly-wound topology, non-covalently bound FMN, electron transport; HET: FNR; NMR {Megasphaera elsdenii} SCOP: c.23.5.1
Probab=20.47 E-value=1.2e+02 Score=19.04 Aligned_cols=47 Identities=11% Similarity=0.117 Sum_probs=29.5
Q ss_pred hhhcCCEEEEEEeCCCcccHHH--HHHHHHHHHhCCCCCCCcEEEEEeCCC
Q 029517 76 YYEEAHAVVFVIDAACPSRFED--SKTALEKVLRNEDLQGAPLLILANKQD 124 (192)
Q Consensus 76 ~~~~~d~ii~v~D~~~~~s~~~--~~~~~~~i~~~~~~~~~piiiv~nK~D 124 (192)
.+..+|+++++.-.-....... +..++..+.. ...++|+.++++--.
T Consensus 43 ~l~~~d~vi~g~p~y~~~~~~~~~~~~fl~~l~~--~l~~k~~~~~~t~g~ 91 (137)
T 2fz5_A 43 DVASKDVILLGCPAMGSEELEDSVVEPFFTDLAP--KLKGKKVGLFGSYGW 91 (137)
T ss_dssp HHHTCSEEEEECCCBTTTBCCHHHHHHHHHHHGG--GCSSCEEEEEEEESS
T ss_pred HHhcCCEEEEEccccCCCCCCHHHHHHHHHHhhh--hcCCCEEEEEEecCC
Confidence 3578999999876543222222 5566666543 235789999888543
No 308
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=20.32 E-value=2.8e+02 Score=20.80 Aligned_cols=66 Identities=21% Similarity=0.161 Sum_probs=36.3
Q ss_pred CEEEEEEeCCCCcccHH----HHH--------HhhhcCCEEEEEEeCCCcccHHHHHHHHHHHHhCCCCCCCcEEEEEeC
Q 029517 55 NSKLVFWDLGGQPGLRS----IWE--------KYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANK 122 (192)
Q Consensus 55 ~~~~~i~D~~G~~~~~~----~~~--------~~~~~~d~ii~v~D~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK 122 (192)
.....+.|++|...... ... ......+.++++.|+....... ..+..+.+. .+ ..+++.||
T Consensus 184 ~~d~~llDt~G~~~~~~~~~~eLs~~r~~iaRal~~~P~~~lLvLDa~t~~~~~---~~~~~~~~~---~~-~t~iivTh 256 (304)
T 1rj9_A 184 GYDLLFVDTAGRLHTKHNLMEELKKVKRAIAKADPEEPKEVWLVLDAVTGQNGL---EQAKKFHEA---VG-LTGVIVTK 256 (304)
T ss_dssp TCSEEEECCCCCCTTCHHHHHHHHHHHHHHHHHCTTCCSEEEEEEETTBCTHHH---HHHHHHHHH---HC-CSEEEEEC
T ss_pred CCCEEEecCCCCCCchHHHHHHHHHHHHHHHHhhcCCCCeEEEEEcHHHHHHHH---HHHHHHHHH---cC-CcEEEEEC
Confidence 34567899999542111 110 1123477788999987654322 233333322 12 35678899
Q ss_pred CCCCC
Q 029517 123 QDLPD 127 (192)
Q Consensus 123 ~Dl~~ 127 (192)
.|...
T Consensus 257 ~d~~a 261 (304)
T 1rj9_A 257 LDGTA 261 (304)
T ss_dssp TTSSC
T ss_pred Ccccc
Confidence 98654
No 309
>2f62_A Nucleoside 2-deoxyribosyltransferase; SGPP, structural genomics, PSI, S genomics of pathogenic protozoa consortium; HET: 12M; 1.50A {Trypanosoma brucei} SCOP: c.23.14.1 PDB: 2a0k_A* 2f2t_A* 2f64_A* 2f67_A*
Probab=20.16 E-value=1.3e+02 Score=20.46 Aligned_cols=44 Identities=9% Similarity=0.061 Sum_probs=25.8
Q ss_pred HHhhhcCCEEEEEEeC---CCcccHHHHHHHHHHHHhCCCCCCCcEEEEEeCC
Q 029517 74 EKYYEEAHAVVFVIDA---ACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQ 123 (192)
Q Consensus 74 ~~~~~~~d~ii~v~D~---~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~ 123 (192)
...+++||++|.++|+ ..++ .....+.=. ... .++|++++.+..
T Consensus 62 ~~~i~~aD~vVA~ldpf~g~~~D-~GTafEiGy--A~A---lgKPVi~l~~d~ 108 (161)
T 2f62_A 62 IQMIKDCDAVIADLSPFRGHEPD-CGTAFEVGC--AAA---LNKMVLTFTSDR 108 (161)
T ss_dssp HHHHHHCSEEEEECCCCSSSSCC-HHHHHHHHH--HHH---TTCEEEEECSCC
T ss_pred HHHHHhCCEEEEEecCCCCCCCC-CcHHHHHHH--HHH---CCCEEEEEEcCc
Confidence 4567899999999984 2222 222222211 111 479999987653
Done!