Query 029519
Match_columns 192
No_of_seqs 162 out of 266
Neff 4.0
Searched_HMMs 46136
Date Fri Mar 29 14:12:53 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029519.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/029519hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4343 bZIP transcription fac 98.3 6.2E-07 1.3E-11 86.4 3.5 32 158-189 274-305 (655)
2 smart00338 BRLZ basic region l 97.5 8.8E-05 1.9E-09 51.9 3.1 27 163-189 3-29 (65)
3 PF00170 bZIP_1: bZIP transcri 97.0 0.00047 1E-08 48.1 2.6 26 164-189 4-29 (64)
4 PF07716 bZIP_2: Basic region 96.8 0.0012 2.6E-08 45.0 3.0 26 163-189 3-28 (54)
5 KOG3584 cAMP response element 96.7 0.0015 3.4E-08 59.5 3.4 33 158-190 284-316 (348)
6 KOG0709 CREB/ATF family transc 96.0 0.0059 1.3E-07 58.3 3.6 31 160-190 246-276 (472)
7 PF03131 bZIP_Maf: bZIP Maf tr 92.4 0.21 4.6E-06 37.3 4.1 29 160-188 25-53 (92)
8 KOG4005 Transcription factor X 72.6 3.7 8E-05 37.2 3.1 40 148-188 53-92 (292)
9 smart00243 GAS2 Growth-Arrest- 44.9 10 0.00022 28.3 0.8 11 79-89 56-66 (73)
10 cd08533 SAM_PNT-ETS-1,2 Steril 40.9 15 0.00033 26.8 1.2 13 79-91 42-54 (71)
11 cd08531 SAM_PNT-ERG_FLI-1 Ster 40.2 16 0.00034 26.9 1.2 13 79-91 44-56 (75)
12 cd08203 SAM_PNT Sterile alpha 38.0 19 0.00041 25.5 1.3 13 79-91 40-52 (66)
13 cd08757 SAM_PNT_ESE Sterile al 35.8 20 0.00044 25.6 1.1 13 79-91 42-54 (68)
14 cd08540 SAM_PNT-ERG Sterile al 30.6 28 0.0006 25.7 1.2 14 79-92 44-57 (75)
15 cd08532 SAM_PNT-PDEF-like Ster 30.5 28 0.0006 25.7 1.2 41 51-91 10-59 (76)
16 cd08534 SAM_PNT-GABP-alpha Ste 28.1 32 0.00069 26.2 1.2 44 48-91 16-69 (89)
17 cd08535 SAM_PNT-Tel_Yan Steril 27.1 34 0.00074 24.7 1.1 12 79-90 41-52 (68)
18 cd08536 SAM_PNT-Mae Sterile al 26.9 34 0.00073 24.5 1.0 13 79-91 40-52 (66)
19 cd08538 SAM_PNT-ESE-2-like Ste 26.5 36 0.00078 25.5 1.1 14 79-92 47-60 (78)
20 smart00251 SAM_PNT SAM / Point 26.4 36 0.00078 25.1 1.2 41 50-90 16-66 (82)
21 PF09279 EF-hand_like: Phospho 25.8 59 0.0013 22.8 2.2 10 56-65 2-11 (83)
22 PF02187 GAS2: Growth-Arrest-S 25.2 38 0.00082 25.2 1.1 11 79-89 56-66 (73)
23 cd08542 SAM_PNT-ETS-1 Sterile 25.0 39 0.00084 25.8 1.1 45 47-91 15-69 (88)
24 PF01475 FUR: Ferric uptake re 24.8 79 0.0017 23.7 2.8 38 53-94 23-60 (120)
25 PF04450 BSP: Peptidase of pla 24.2 35 0.00075 29.3 0.8 14 49-62 191-204 (205)
26 cd08541 SAM_PNT-FLI-1 Sterile 24.1 45 0.00097 25.6 1.3 46 47-92 13-69 (91)
27 KOG3330 Transport protein part 22.9 43 0.00094 28.7 1.1 13 81-93 57-69 (183)
28 PF03698 UPF0180: Uncharacteri 22.2 69 0.0015 24.0 2.0 17 49-65 61-77 (80)
29 TIGR02010 IscR iron-sulfur clu 21.1 59 0.0013 25.3 1.5 32 53-90 103-134 (135)
30 KOG3170 Conserved phosducin-li 21.0 64 0.0014 28.8 1.8 16 80-95 191-207 (240)
31 PF00727 IL4: Interleukin 4 Th 21.0 49 0.0011 26.6 1.0 12 79-90 98-109 (117)
32 PF12221 HflK_N: Bacterial mem 20.5 66 0.0014 21.4 1.4 11 55-65 22-32 (42)
33 cd04405 RhoGAP_BRCC3-like RhoG 20.4 43 0.00094 29.8 0.7 16 51-66 1-16 (235)
No 1
>KOG4343 consensus bZIP transcription factor ATF6 [Transcription]
Probab=98.25 E-value=6.2e-07 Score=86.36 Aligned_cols=32 Identities=50% Similarity=0.590 Sum_probs=29.9
Q ss_pred hhhHHHHHHHHHhhhhhHHHHHHHHHHhhhhh
Q 029519 158 PLDKAAQQRQRRMIKNRESAARSRERKQVTKL 189 (192)
Q Consensus 158 ~~~~~~~r~~~r~~~nresa~rsr~rkq~~~~ 189 (192)
.+|..+-+|+.|||||||||+.||+||++|.+
T Consensus 274 ~~d~kv~krqQRmIKNResA~~SRkKKKEy~~ 305 (655)
T KOG4343|consen 274 GSDIKVLKRQQRMIKNRESACQSRKKKKEYML 305 (655)
T ss_pred ccCHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 46889999999999999999999999999986
No 2
>smart00338 BRLZ basic region leucin zipper.
Probab=97.51 E-value=8.8e-05 Score=51.87 Aligned_cols=27 Identities=48% Similarity=0.636 Sum_probs=24.6
Q ss_pred HHHHHHHhhhhhHHHHHHHHHHhhhhh
Q 029519 163 AQQRQRRMIKNRESAARSRERKQVTKL 189 (192)
Q Consensus 163 ~~r~~~r~~~nresa~rsr~rkq~~~~ 189 (192)
++++.+|+++||++|+++|.||++|+.
T Consensus 3 ~~k~~rR~~rNR~aA~~~R~rKk~~~~ 29 (65)
T smart00338 3 DEKRRRRRERNREAARRSRERKKAEIE 29 (65)
T ss_pred cHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 468899999999999999999999974
No 3
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=97.04 E-value=0.00047 Score=48.11 Aligned_cols=26 Identities=46% Similarity=0.589 Sum_probs=23.4
Q ss_pred HHHHHHhhhhhHHHHHHHHHHhhhhh
Q 029519 164 QQRQRRMIKNRESAARSRERKQVTKL 189 (192)
Q Consensus 164 ~r~~~r~~~nresa~rsr~rkq~~~~ 189 (192)
.++.+|+++||++|+++|.||++|+-
T Consensus 4 ~k~~~rr~rNR~AAr~~R~RKk~~~~ 29 (64)
T PF00170_consen 4 DKRERRRERNREAARRSRQRKKQYIE 29 (64)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhhHH
Confidence 47899999999999999999999974
No 4
>PF07716 bZIP_2: Basic region leucine zipper; InterPro: IPR011700 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotes are proteins that contain a basic region mediating sequence-specific DNA-binding, followed by a leucine zipper region (see IPR002158 from INTERPRO), which is required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1NWQ_A 1H89_B 1H88_A 1GTW_B 2E43_A 1IO4_A 1GU4_B 2E42_A 1H8A_B 1GU5_B ....
Probab=96.82 E-value=0.0012 Score=44.96 Aligned_cols=26 Identities=46% Similarity=0.694 Sum_probs=22.8
Q ss_pred HHHHHHHhhhhhHHHHHHHHHHhhhhh
Q 029519 163 AQQRQRRMIKNRESAARSRERKQVTKL 189 (192)
Q Consensus 163 ~~r~~~r~~~nresa~rsr~rkq~~~~ 189 (192)
.+.+.+|. +||++|++||.||++|+.
T Consensus 3 ~~~~~rR~-rNr~AA~r~R~rkk~~~~ 28 (54)
T PF07716_consen 3 EEKRERRE-RNREAARRSRQRKKQREE 28 (54)
T ss_dssp HHHHHHHH-HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHH-HHHHHHHHHHHHHHHHHH
Confidence 46778888 999999999999999864
No 5
>KOG3584 consensus cAMP response element binding protein and related transcription factors [Transcription]
Probab=96.65 E-value=0.0015 Score=59.55 Aligned_cols=33 Identities=33% Similarity=0.572 Sum_probs=29.7
Q ss_pred hhhHHHHHHHHHhhhhhHHHHHHHHHHhhhhhh
Q 029519 158 PLDKAAQQRQRRMIKNRESAARSRERKQVTKLC 190 (192)
Q Consensus 158 ~~~~~~~r~~~r~~~nresa~rsr~rkq~~~~~ 190 (192)
..|....+|+-|++||||-|++=|.||++|.-|
T Consensus 284 ~aee~trKRevRLmKNREAARECRRKKKEYVKC 316 (348)
T KOG3584|consen 284 GAEEATRKREVRLMKNREAARECRRKKKEYVKC 316 (348)
T ss_pred cchhhhhHHHHHHHhhHHHHHHHHHhHhHHHHH
Confidence 446677789999999999999999999999988
No 6
>KOG0709 consensus CREB/ATF family transcription factor [Transcription]
Probab=96.02 E-value=0.0059 Score=58.32 Aligned_cols=31 Identities=32% Similarity=0.375 Sum_probs=27.4
Q ss_pred hHHHHHHHHHhhhhhHHHHHHHHHHhhhhhh
Q 029519 160 DKAAQQRQRRMIKNRESAARSRERKQVTKLC 190 (192)
Q Consensus 160 ~~~~~r~~~r~~~nresa~rsr~rkq~~~~~ 190 (192)
+..+.+|-+|+|+|++||..||+|||+|.=|
T Consensus 246 EEriLKrvRRKIrNK~SAQESRrkKkeYid~ 276 (472)
T KOG0709|consen 246 EERILKRVRRKIRNKRSAQESRRKKKEYIDG 276 (472)
T ss_pred HHHHHHHHHHHHHhhhhhHHHHHhHhhHHHH
Confidence 5567788999999999999999999999754
No 7
>PF03131 bZIP_Maf: bZIP Maf transcription factor; InterPro: IPR004826 There are several different types of Maf transcription factors with different roles in the cell. MafG and MafH are small Mafs which lack a putative transactivation domain. They behave as transcriptional repressors when they dimerize among themselves. However they also serve as transcriptional activators by dimerizing with other (usually larger) basic-zipper proteins and recruiting them to specific DNA-binding sites. Maf transcription factors contain a conserved basic region leucine zipper (bZIP) domain, which mediates their dimerization and DNA binding property. Neural retina-specific leucine zipper proteins also belong to this family. Together with the basic region, the Maf extended homology region (EHR), conserved only within the Maf family, defines the DNA binding specific to Mafs. This structure enables Mafs to make a broader area of contact with DNA and to recognise longer DNA sequences. In particular, the two residues at the beginning of helix H2 are positioned to recognise the flanking region []. Small Maf proteins heterodimerize with Fos and may act as competitive repressors of the NF2-E2 transcription factor. In mouse, Maf1 may play an early role in axial patterning. Defects in these proteins are a cause of autosomal dominant retinitis pigmentosa. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 2KZ5_A 3A5T_A 1K1V_A 1SKN_P 2WT7_B 2WTY_B.
Probab=92.41 E-value=0.21 Score=37.30 Aligned_cols=29 Identities=34% Similarity=0.385 Sum_probs=24.2
Q ss_pred hHHHHHHHHHhhhhhHHHHHHHHHHhhhh
Q 029519 160 DKAAQQRQRRMIKNRESAARSRERKQVTK 188 (192)
Q Consensus 160 ~~~~~r~~~r~~~nresa~rsr~rkq~~~ 188 (192)
+...-+..+|-+|||..|+++|.||..++
T Consensus 25 q~~~lK~~RRr~KNR~~A~~cR~rk~~~~ 53 (92)
T PF03131_consen 25 QIAELKQRRRRLKNRGYAQNCRKRKLDQI 53 (92)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555778888999999999999998765
No 8
>KOG4005 consensus Transcription factor XBP-1 [Transcription]
Probab=72.64 E-value=3.7 Score=37.16 Aligned_cols=40 Identities=38% Similarity=0.483 Sum_probs=28.0
Q ss_pred CCCcCccccchhhHHHHHHHHHhhhhhHHHHHHHHHHhhhh
Q 029519 148 RGKRGRVMLEPLDKAAQQRQRRMIKNRESAARSRERKQVTK 188 (192)
Q Consensus 148 ~~~RkR~~~~~~~~~~~r~~~r~~~nresa~rsr~rkq~~~ 188 (192)
.++|||.-.+.+ .-.|+-++|++|||--|.-+|-||+++.
T Consensus 53 ~~~rKr~RL~HL-S~EEK~~RrKLKNRVAAQtaRDrKKaRm 92 (292)
T KOG4005|consen 53 QPKRKRRRLDHL-SWEEKVQRRKLKNRVAAQTARDRKKARM 92 (292)
T ss_pred chHHHHHhhccc-CHHHHHHHHHHHHHHHHhhhhhHHHHHH
Confidence 445655432222 2345667889999999999999999874
No 9
>smart00243 GAS2 Growth-Arrest-Specific Protein 2 Domain. GROWTH-ARREST-SPECIFIC PROTEIN 2 Domain
Probab=44.86 E-value=10 Score=28.33 Aligned_cols=11 Identities=36% Similarity=0.582 Sum_probs=9.6
Q ss_pred cccHHHHHhhh
Q 029519 79 MMTLEDFLAKA 89 (192)
Q Consensus 79 eMTLEDFLvKA 89 (192)
=||||+||.|-
T Consensus 56 W~tL~~fL~kh 66 (73)
T smart00243 56 WETLDEYLLKH 66 (73)
T ss_pred HHHHHHHHHhC
Confidence 49999999984
No 10
>cd08533 SAM_PNT-ETS-1,2 Sterile alpha motif (SAM)/Pointed domain of ETS-1,2 family. SAM Pointed domain of ETS-1,2 family of transcriptional activators is a protein-protein interaction domain. It carries a kinase docking site and mediates interaction between ETS transcriptional activators and protein kinases. This group of transcriptional factors is involved in the Ras/MAP kinase signaling pathway. MAP kinases phosphorylate the transcription factors. Phosphorylated factors then recruit coactivators and enhance transactivation. Members of this group play a role in regulation of different embryonic developmental processes. ETS-1,2 transcriptional activators are proto-oncogenes involved in malignant transformation and tumor progression. They are potential molecular targets for selective cancer therapy.
Probab=40.90 E-value=15 Score=26.83 Aligned_cols=13 Identities=31% Similarity=0.299 Sum_probs=11.6
Q ss_pred cccHHHHHhhhcc
Q 029519 79 MMTLEDFLAKAGA 91 (192)
Q Consensus 79 eMTLEDFLvKAGv 91 (192)
.||.|||+.+|+.
T Consensus 42 ~ls~edF~~~~p~ 54 (71)
T cd08533 42 ALGKERFLELAPD 54 (71)
T ss_pred cCCHHHHHHHcCC
Confidence 6999999999874
No 11
>cd08531 SAM_PNT-ERG_FLI-1 Sterile alpha motif (SAM)/Pointed domain of ERG (Ets related gene) and FLI-1 (Friend leukemia integration 1) transcription factors. SAM Pointed domain of ERG/FLI-1 subfamily of ETS transcriptional regulators is a putative protein-protein interaction domain. The ERG and FLI regulators are involved in endothelial cell differentiation, bone morphogenesis and neural crest development. They are proto-oncogenes implicated in cancer development such as myeloid leukemia, Ewing's sarcoma and erythroleukemia. Members of this subfamily are potential targets for cancer therapy.
Probab=40.21 E-value=16 Score=26.93 Aligned_cols=13 Identities=54% Similarity=0.598 Sum_probs=11.3
Q ss_pred cccHHHHHhhhcc
Q 029519 79 MMTLEDFLAKAGA 91 (192)
Q Consensus 79 eMTLEDFLvKAGv 91 (192)
.||.|||+.+++.
T Consensus 44 ~lt~edF~~~~~~ 56 (75)
T cd08531 44 KMTKEDFLRLTSA 56 (75)
T ss_pred cCCHHHHHHHcCC
Confidence 6999999999854
No 12
>cd08203 SAM_PNT Sterile alpha motif (SAM)/Pointed domain. Sterile alpha motif (SAM)/Pointed domain is found in about 40% of transcriptional regulators of ETS family (initially named for Erythroblastosis virus, E26-E Twenty Six). SAM Pointed domain containing proteins of this family additionally have C-terminal ETS DNA-binding domain. In a few cases, SAM Pointed domain appears as a single domain protein. Members of this group are mostly involved in regulation of embryonic development and growth control in eukaryotes. SAM Pointed domains mediate protein-protein interactions. Depending on the subgroup, they can interact with other SAM Pointed domains forming homo or hetero dimers/oligomers and/or they can recruit a protein kinase to its target which can be the SAM Pointed domain containing protein itself or another protein that has no kinase docking site. Thus, SAM Pointed domains participate in transcriptional regulation and signal transduction. Some genes coding ETS family transcripti
Probab=38.03 E-value=19 Score=25.47 Aligned_cols=13 Identities=46% Similarity=0.751 Sum_probs=11.7
Q ss_pred cccHHHHHhhhcc
Q 029519 79 MMTLEDFLAKAGA 91 (192)
Q Consensus 79 eMTLEDFLvKAGv 91 (192)
.||.|||+.+++.
T Consensus 40 ~ls~edF~~~~p~ 52 (66)
T cd08203 40 LLTKEDFLRRAPS 52 (66)
T ss_pred hCCHHHHHHHcCC
Confidence 6999999999875
No 13
>cd08757 SAM_PNT_ESE Sterile alpha motif (SAM)/Pointed domain of ESE-like ETS transcriptional regulators. SAM Pointed domain of ESE-like (Epithelium-Specific ETS) subfamily of ETS transcriptional regulators is a putative protein-protein interaction domain. It can act as a major transactivator by providing a potential docking site for co-activators. ETS factors are important for cell differentiation. They can be involved in regulation of gene expression in different types of epithelial cells. They are expressed in salivary gland, intestine, stomach, pancreas, lungs, kidneys, colon, mammary gland, and prostate. Members of this group are proto-oncogenes. Expression profiles of these factors are altered in epithelial cancers, which makes them potential targets for cancer therapy.
Probab=35.75 E-value=20 Score=25.58 Aligned_cols=13 Identities=46% Similarity=0.601 Sum_probs=11.7
Q ss_pred cccHHHHHhhhcc
Q 029519 79 MMTLEDFLAKAGA 91 (192)
Q Consensus 79 eMTLEDFLvKAGv 91 (192)
.||.|||+.+++.
T Consensus 42 ~ms~edF~~~~p~ 54 (68)
T cd08757 42 SMTEEEFREAAGS 54 (68)
T ss_pred cCCHHHHHHHcCC
Confidence 6999999999875
No 14
>cd08540 SAM_PNT-ERG Sterile alpha motif (SAM)/Pointed domain of ERG transcription factor. SAM Pointed domain of ERG subfamily of ETS transcriptional regulators is a putative protein-protein interaction domain. It may participate in formation of homodimers or heterodimers with ETS-2, Fli-1, ER81, and Pu-1. However, dimeric forms are inactive and SAM Pointed domain is not essential for dimerization, since ER81 and Pu-1 do not have it. In mouse, a regulator of this type binds the ESET histone H3-specific methyltransferase (human homolog is SETDB1), followed by modification of local chromatin structure through histone methylation. ERG regulators are involved in endothelial cell differentiation, bone morphogenesis and neural crest development. The Erg gene is a proto-oncogene. It is a target of chromosomal translocations resulting in fusions with new neighboring genes. Chimeric proteins were found in solid tumors such as myeloid leukemia or Ewing's sarcoma. Members of this subfamily are po
Probab=30.61 E-value=28 Score=25.70 Aligned_cols=14 Identities=29% Similarity=0.297 Sum_probs=12.0
Q ss_pred cccHHHHHhhhccc
Q 029519 79 MMTLEDFLAKAGAV 92 (192)
Q Consensus 79 eMTLEDFLvKAGvv 92 (192)
.||.|||+.+|+..
T Consensus 44 ~LskedF~~~ap~~ 57 (75)
T cd08540 44 KMTKDDFQRLTPSY 57 (75)
T ss_pred hCCHHHHHHHcCCC
Confidence 69999999998643
No 15
>cd08532 SAM_PNT-PDEF-like Sterile alpha motif (SAM)/Pointed domain of prostate-derived ETS factor. SAM Pointed domain of PDEF-like (Prostate-Derived ETS Factor) subfamily of ETS transcriptional regulators is a putative protein-protein interaction domain. In human males this activator is highly expressed in the prostate gland and enhances androgen-mediated activation of the PSA promoter though interaction with the DNA binding domain of androgen receptor. PDEF may play a role in prostate cancer development as well as in goblet cell formation and mucus production in the epithelial lining of respiratory and intestinal tracts.
Probab=30.46 E-value=28 Score=25.71 Aligned_cols=41 Identities=17% Similarity=0.044 Sum_probs=23.0
Q ss_pred CCCCCHHHHHHHHHhCcccc-hh-hhhhc------c-cccHHHHHhhhcc
Q 029519 51 GAMKSVDDVWREIVSGEKKE-MK-EEAID------E-MMTLEDFLAKAGA 91 (192)
Q Consensus 51 lskKTVDEVWrdIq~~~~~~-~~-~~~~~------~-eMTLEDFLvKAGv 91 (192)
..-=|.+.|+.=++-....- -. ....+ . .||.|||+.++..
T Consensus 10 P~~Ws~~~V~~WL~w~~~ef~L~~~~~~F~mnG~~LC~ls~edF~~r~p~ 59 (76)
T cd08532 10 PYQWSPANVQKWLLWTEHQYRLPPPPRCFELNGKDLCALSEEDFRRRAPQ 59 (76)
T ss_pred hhhcCHHHHHHHHHHHHHHhCCCCchhcCCCCHHHHHcCCHHHHHHHcCC
Confidence 34457788877666432110 00 11101 1 6999999999864
No 16
>cd08534 SAM_PNT-GABP-alpha Sterile alpha motif (SAM)/Pointed domain of GA-binding protein alpha chain. SAM Pointed domain of GABP-alpha subfamily of ETS transcriptional regulators is a putative protein-protein interaction domain. This type of transcriptional regulators forms heterotetramers containing two alpha and two beta subunits. It interacts with GA repeats (purine rich repeats). GABP transcriptional factors control gene expression in cell cycle control, apoptosis, and cellular respiration. GABP participates in regulation of transmembrane receptors and key hormones especially in myeloid cells and at the neuromuscular junction.
Probab=28.10 E-value=32 Score=26.17 Aligned_cols=44 Identities=18% Similarity=0.167 Sum_probs=25.1
Q ss_pred CCCCCCCCHHHHHHHHHhCccc----c--hhhhhhc---c-cccHHHHHhhhcc
Q 029519 48 VSAGAMKSVDDVWREIVSGEKK----E--MKEEAID---E-MMTLEDFLAKAGA 91 (192)
Q Consensus 48 ~~~lskKTVDEVWrdIq~~~~~----~--~~~~~~~---~-eMTLEDFLvKAGv 91 (192)
|....-=|-+.||.=++-..+. . ...-... . .||.|||+.++..
T Consensus 16 P~DP~~Wt~~~V~~WL~Wa~~ef~L~~v~~~~F~m~Gk~LC~Ls~edF~~r~p~ 69 (89)
T cd08534 16 PYDPMEWTEDQVLHWVVWAVKEFSLTDIDLSDWNITGRELCSLTQEEFFQRVPK 69 (89)
T ss_pred CCChHHcCHHHHHHHHHHHHHHcCCCCCChhhcCCCHHHHhcCCHHHHHHHcCC
Confidence 4445556778887766643211 0 0000001 1 6999999999874
No 17
>cd08535 SAM_PNT-Tel_Yan Sterile alpha motif (SAM)/Pointed domain of Tel/Yan protein. SAM Pointed domain of Tel (Translocation, Ets, Leukemia)/Yan subfamily of ETS transcriptional repressors is a protein-protein interaction domain. SAM Pointed domains of this type of regulators can interact with each other, forming head-to-tail homodimers or homooligomers, and/or interact with SAM Pointed domains of another subfamily of ETS factors forming heterodimers. The oligomeric form is able to block transcription of target genesand is involved in MAPK signaling. They participate in regulation of different processes during embryo development including hematopoietic differentiation and eye development. Tel/Yan transcriptional factors are frequent targets of chromosomal translocations resulting in fusions of SAM domain with new neighboring genes. Such chimeric proteins were found in different tumors. Members of this subfamily are potential targets for cancer therapy.
Probab=27.11 E-value=34 Score=24.69 Aligned_cols=12 Identities=33% Similarity=0.531 Sum_probs=10.8
Q ss_pred cccHHHHHhhhc
Q 029519 79 MMTLEDFLAKAG 90 (192)
Q Consensus 79 eMTLEDFLvKAG 90 (192)
.||.|||+.++.
T Consensus 41 ~ls~edF~~r~p 52 (68)
T cd08535 41 LLTKEDFRYRSP 52 (68)
T ss_pred cCCHHHHhhhCC
Confidence 699999999875
No 18
>cd08536 SAM_PNT-Mae Sterile alpha motif (SAM)/Pointed domain of Mae protein homolog. Mae (Modulator of the Activity of ETS) subfamily represents a group of SAM Pointed monodomain proteins. SAM Pointed domain is a protein-protein interaction domain. It can interact with other SAM pointed domains forming head-to-tail heterodimers and also provides a kinase docking site. For example, in Drosophila Mae is required for facilitating phosphorylation of the Yan factor and for blocking phosphorylation of the ETS-2 regulator. Mae interacts with the SAM Pointed domains of Yan and ETS-2. Binding enhances access of the kinase to the Yan phosphorylation site by providing a kinase docking site, or inhibits phosphorylation of ETS-2 by blocking its docking site. This type of factors participates in regulation of kinase signaling particularly during embryogenesis.
Probab=26.94 E-value=34 Score=24.54 Aligned_cols=13 Identities=38% Similarity=0.677 Sum_probs=10.9
Q ss_pred cccHHHHHhhhcc
Q 029519 79 MMTLEDFLAKAGA 91 (192)
Q Consensus 79 eMTLEDFLvKAGv 91 (192)
.||.|||+.|+..
T Consensus 40 ~ls~edF~~r~P~ 52 (66)
T cd08536 40 LMSLEGFLYRVPV 52 (66)
T ss_pred cCCHHHHHhhcCC
Confidence 6999999998743
No 19
>cd08538 SAM_PNT-ESE-2-like Sterile alpha motif (SAM)/Pointed domain of ESE-2 like ETS transcriptional regulators. SAM Pointed domain of ESE-2-like (Epithelium-Specific ETS) subfamily of ETS transcriptional regulators is a putative protein-protein interaction domain. It can act as a major transactivator by providing a potential docking site for co-activators. ESE-2 factors are involved in regulation of gene expression in a variety of epithelial (glandular and secretory) cells. ESE-2 mRNA was found in skin keratinocytes, salivary gland, mammary gland, stomach, prostate, and kidneys. The DNA binding consensus motif for ESE-2 consists of a GGA core and AT-rich flanks. The expression profiles of these factors are altered in epithelial cancers. Members of this subfamily are potential targets for cancer therapy.
Probab=26.45 E-value=36 Score=25.45 Aligned_cols=14 Identities=43% Similarity=0.660 Sum_probs=12.1
Q ss_pred cccHHHHHhhhccc
Q 029519 79 MMTLEDFLAKAGAV 92 (192)
Q Consensus 79 eMTLEDFLvKAGvv 92 (192)
.||.|||+-+|+..
T Consensus 47 ~ms~eeF~~~~p~~ 60 (78)
T cd08538 47 SMTQEEFIEAAGIC 60 (78)
T ss_pred cCCHHHHHHHcccc
Confidence 69999999999843
No 20
>smart00251 SAM_PNT SAM / Pointed domain. A subfamily of the SAM domain
Probab=26.40 E-value=36 Score=25.14 Aligned_cols=41 Identities=20% Similarity=0.186 Sum_probs=24.2
Q ss_pred CCCCCCHHHHHHHHHhCccc----c--hhhhhhc----ccccHHHHHhhhc
Q 029519 50 AGAMKSVDDVWREIVSGEKK----E--MKEEAID----EMMTLEDFLAKAG 90 (192)
Q Consensus 50 ~lskKTVDEVWrdIq~~~~~----~--~~~~~~~----~eMTLEDFLvKAG 90 (192)
...-=|.++|+.=|+-.... . ...-... -.||.|||+.+++
T Consensus 16 dP~~Wt~~~V~~Wl~w~~~ef~L~~~~~~~f~m~G~~Lc~ls~edF~~~~p 66 (82)
T smart00251 16 DPQLWTEDHVLEWLEWAVKEFSLSPIDFSKFDMSGKELCSMSKEEFLERAP 66 (82)
T ss_pred ChhhCCHHHHHHHHHHHHHhcCCCCCCcccCCCCHHHHHcCCHHHHHHHcC
Confidence 44456788888877654211 0 0000001 1699999999997
No 21
>PF09279 EF-hand_like: Phosphoinositide-specific phospholipase C, efhand-like; InterPro: IPR015359 This domain is predominantly found in the enzyme phosphoinositol-specific phospholipase C. It adopts a structure consisting of a core of four alpha helices, in an EF like fold, and is required for functioning of the enzyme []. ; PDB: 3OHM_B 3QR0_A 2ZKM_X 2FJU_B 3QR1_D 1DJW_B 1DJI_B 1DJG_B 1QAS_B 2ISD_B ....
Probab=25.75 E-value=59 Score=22.83 Aligned_cols=10 Identities=20% Similarity=0.720 Sum_probs=7.4
Q ss_pred HHHHHHHHHh
Q 029519 56 VDDVWREIVS 65 (192)
Q Consensus 56 VDEVWrdIq~ 65 (192)
|++||+.+-.
T Consensus 2 i~~if~~ys~ 11 (83)
T PF09279_consen 2 IEEIFRKYSS 11 (83)
T ss_dssp HHHHHHHHCT
T ss_pred HHHHHHHHhC
Confidence 6788988833
No 22
>PF02187 GAS2: Growth-Arrest-Specific Protein 2 Domain; InterPro: IPR003108 The growth-arrest-specific protein 2 domain is found associated with the spectrin repeat, calponin homology domain and EF hand in many proteins. It is found among others in the growth arrest-specific protein 2 [].; GO: 0007050 cell cycle arrest; PDB: 1V5R_A.
Probab=25.20 E-value=38 Score=25.18 Aligned_cols=11 Identities=45% Similarity=0.607 Sum_probs=9.4
Q ss_pred cccHHHHHhhh
Q 029519 79 MMTLEDFLAKA 89 (192)
Q Consensus 79 eMTLEDFLvKA 89 (192)
=+|||+||.|-
T Consensus 56 W~tL~~~L~kh 66 (73)
T PF02187_consen 56 WDTLEEYLDKH 66 (73)
T ss_dssp EEEHHHHHHHH
T ss_pred HHHHHHHhhcc
Confidence 49999999874
No 23
>cd08542 SAM_PNT-ETS-1 Sterile alpha motif (SAM)/Pointed domain of ETS-1. SAM Pointed domain of ETS-1 subfamily of ETS transcriptional activators is a protein-protein interaction domain. The ETS-1 activator is regulated by phosphorylation. It contains a docking site for the ERK2 MAP (Mitogen Activated Protein) kinase, while the ERK2 phosphorylation site is located in the N-terminal disordered region upstream of the SAM Pointed domain. Mutations of the kinase docking site residues inhibit phosphorylation. ETS-1 activators play role in a number of different physiological processes, and they are expressed during embryonic development, including blood vessel formation, hematopoietic, lymphoid, neuronal and osteogenic differentiation. The Ets-1 gene is a proto-oncogene involved in progression of different tumors (including breast cancer, meningioma, and prostate cancer). Members of this subfamily are potential molecular targets for selective cancer therapy.
Probab=25.05 E-value=39 Score=25.80 Aligned_cols=45 Identities=13% Similarity=0.020 Sum_probs=25.5
Q ss_pred CCCCCCCCCHHHHHHHHHhCcc----cch--hhhhhc---c-cccHHHHHhhhcc
Q 029519 47 AVSAGAMKSVDDVWREIVSGEK----KEM--KEEAID---E-MMTLEDFLAKAGA 91 (192)
Q Consensus 47 ~~~~lskKTVDEVWrdIq~~~~----~~~--~~~~~~---~-eMTLEDFLvKAGv 91 (192)
+|....-=|.+.||.=++-... .+. ..=... . .||.||||.++..
T Consensus 15 Ip~DP~~Wt~~~V~~WL~Wa~~ef~L~~i~~~~F~m~Gk~LC~Ls~edF~~~~P~ 69 (88)
T cd08542 15 IPKDPRQWTETHVRDWVMWAVNEFSLKGVDFQKFCMNGAALCALGKECFLELAPD 69 (88)
T ss_pred CCCChhhCCHHHHHHHHHHHHHHcCCCCCCcccCCCCHHHHHcCCHHHHHhHcCC
Confidence 3445566788899866654311 110 000011 2 6999999999853
No 24
>PF01475 FUR: Ferric uptake regulator family; InterPro: IPR002481 The Ferric uptake regulator (FUR) family includes metal ion uptake regulator proteins. These are responsible for controlling the intracellular concentration of iron in many bacteria. Although iron is essential for most organisms, high concentrations can be toxic because of the formation of hydroxyl radicals []. FURs can also control zinc homeostasis [] and is the subject of research on the pathogenesis of mycobacteria.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1MZB_A 2RGV_B 2FE3_B 3F8N_B 3EYY_B 2W57_A 2FU4_A 2O03_A 3MWM_B 2XIG_B ....
Probab=24.75 E-value=79 Score=23.70 Aligned_cols=38 Identities=16% Similarity=0.284 Sum_probs=22.7
Q ss_pred CCCHHHHHHHHHhCcccchhhhhhcccccHHHHHhhhccccc
Q 029519 53 MKSVDDVWREIVSGEKKEMKEEAIDEMMTLEDFLAKAGAVED 94 (192)
Q Consensus 53 kKTVDEVWrdIq~~~~~~~~~~~~~~eMTLEDFLvKAGvv~e 94 (192)
--|++|||+.+......=.. .+-==|| |+|+++|++..
T Consensus 23 ~~ta~ei~~~l~~~~~~is~---~TVYR~L-~~L~e~Gli~~ 60 (120)
T PF01475_consen 23 HLTAEEIYDKLRKKGPRISL---ATVYRTL-DLLEEAGLIRK 60 (120)
T ss_dssp SEEHHHHHHHHHHTTTT--H---HHHHHHH-HHHHHTTSEEE
T ss_pred CCCHHHHHHHhhhccCCcCH---HHHHHHH-HHHHHCCeEEE
Confidence 35899999999854322000 0001123 78999999965
No 25
>PF04450 BSP: Peptidase of plants and bacteria; InterPro: IPR007541 These basic secretory proteins (BSPs) are believed to be part of the plants defence mechanism against pathogens [].
Probab=24.23 E-value=35 Score=29.32 Aligned_cols=14 Identities=36% Similarity=0.582 Sum_probs=11.0
Q ss_pred CCCCCCCHHHHHHH
Q 029519 49 SAGAMKSVDDVWRE 62 (192)
Q Consensus 49 ~~lskKTVDEVWrd 62 (192)
..+.+|+|||+|+|
T Consensus 191 ~~l~G~~v~~LW~e 204 (205)
T PF04450_consen 191 KELLGKPVDELWAE 204 (205)
T ss_pred HHHHCcCHHHHHhh
Confidence 45678888888876
No 26
>cd08541 SAM_PNT-FLI-1 Sterile alpha motif (SAM)/Pointed domain of friend leukemia integration 1 transcription activator. SAM Pointed domain of FLI-1 (Friend Leukemia Integration) subfamily of ETS transcriptional regulators is a putative protein-protein interaction domain. The FLI-1 protein participates in regulation of cellular differentiation, proliferation, and survival. The Fli-1 gene was initially described in Friend virus-induced erythroleukemias as a site for virus integration. It is highly expressed in hematopoietic tissues and at lower level in lungs, heart, and ovaries. Fli-1 is a proto-oncogene implicated in Ewing's sarcoma and erythroleukemia. Members of this subfamily are potential targets for cancer therapy.
Probab=24.12 E-value=45 Score=25.62 Aligned_cols=46 Identities=20% Similarity=0.180 Sum_probs=27.3
Q ss_pred CCCCCCCCCHHHHHHHHHhCccc----c--hhh-hhhcc----cccHHHHHhhhccc
Q 029519 47 AVSAGAMKSVDDVWREIVSGEKK----E--MKE-EAIDE----MMTLEDFLAKAGAV 92 (192)
Q Consensus 47 ~~~~lskKTVDEVWrdIq~~~~~----~--~~~-~~~~~----eMTLEDFLvKAGvv 92 (192)
+|....-=|.++||.=++-..+. + ... ....+ .||-|||+.+++..
T Consensus 13 IP~DP~~Wt~~hV~~WL~Wa~~ef~L~~vd~~~F~~m~Gk~LC~LskedF~~~~p~~ 69 (91)
T cd08541 13 VPADPTLWTQEHVRQWLEWAIKEYGLMEIDTSFFQNMDGKELCKMNKEDFLRATSLY 69 (91)
T ss_pred CCCChhhcCHHHHHHHHHHHHHHcCCCCCChhhccCCCHHHHHhCCHHHHHHHcCCC
Confidence 45566667889998766643211 1 000 00111 69999999998654
No 27
>KOG3330 consensus Transport protein particle (TRAPP) complex subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=22.89 E-value=43 Score=28.75 Aligned_cols=13 Identities=46% Similarity=0.682 Sum_probs=10.9
Q ss_pred cHHHHHhhhcccc
Q 029519 81 TLEDFLAKAGAVE 93 (192)
Q Consensus 81 TLEDFLvKAGvv~ 93 (192)
-.||||+|++|-+
T Consensus 57 LiedFLAks~vpR 69 (183)
T KOG3330|consen 57 LIEDFLAKSNVPR 69 (183)
T ss_pred HHHHHHhhcCCch
Confidence 4699999999874
No 28
>PF03698 UPF0180: Uncharacterised protein family (UPF0180); InterPro: IPR005370 The members of this family are small uncharacterised proteins.
Probab=22.23 E-value=69 Score=24.01 Aligned_cols=17 Identities=6% Similarity=0.157 Sum_probs=14.4
Q ss_pred CCCCCCCHHHHHHHHHh
Q 029519 49 SAGAMKSVDDVWREIVS 65 (192)
Q Consensus 49 ~~lskKTVDEVWrdIq~ 65 (192)
-.++++|.|||+.+|..
T Consensus 61 InA~G~T~eEI~~~v~~ 77 (80)
T PF03698_consen 61 INASGLTAEEIVQEVEE 77 (80)
T ss_pred EecCCCCHHHHHHHHHH
Confidence 56799999999998853
No 29
>TIGR02010 IscR iron-sulfur cluster assembly transcription factor IscR. This model describes IscR, an iron-sulfur binding transcription factor of the ISC iron-sulfur cluster assembly system.
Probab=21.07 E-value=59 Score=25.27 Aligned_cols=32 Identities=16% Similarity=0.337 Sum_probs=21.1
Q ss_pred CCCHHHHHHHHHhCcccchhhhhhcccccHHHHHhhhc
Q 029519 53 MKSVDDVWREIVSGEKKEMKEEAIDEMMTLEDFLAKAG 90 (192)
Q Consensus 53 kKTVDEVWrdIq~~~~~~~~~~~~~~eMTLEDFLvKAG 90 (192)
.-.+..+|.+++..-. .....+||+|++.+..
T Consensus 103 ~c~~~~~~~~~~~~~~------~~L~~~TL~dl~~~~~ 134 (135)
T TIGR02010 103 RCLTHDLWADLSKHIR------DYLESISLADLVNQQN 134 (135)
T ss_pred CccHHHHHHHHHHHHH------HHHhcCcHHHHHhhcc
Confidence 3346789998876521 1134799999986543
No 30
>KOG3170 consensus Conserved phosducin-like protein [Signal transduction mechanisms]
Probab=21.04 E-value=64 Score=28.83 Aligned_cols=16 Identities=50% Similarity=0.810 Sum_probs=12.6
Q ss_pred ccHHHHHhhhc-ccccc
Q 029519 80 MTLEDFLAKAG-AVEDS 95 (192)
Q Consensus 80 MTLEDFLvKAG-vv~e~ 95 (192)
-.||+||++|| ++++.
T Consensus 191 ed~e~~L~qaga~l~d~ 207 (240)
T KOG3170|consen 191 EDVEDFLVQAGAALTDG 207 (240)
T ss_pred HHHHHHHHhcccccccc
Confidence 45899999999 66654
No 31
>PF00727 IL4: Interleukin 4 This family is a subset of the SCOP family; InterPro: IPR002354 Cytokines are protein messengers that carry information from cell to cell []. Interleukin is one such molecule, and participates in several B-cell activation processes: e.g., it enhances production and secretion of IgG1 and IgE []; it induces expression of class II major histocompatability complex (MHC) molecules on resting B-cells; and it regulates expression of the low affinity Fc receptor for IgE on lymphocytes and monocytes. Interleukin-4 (IL4) has a compact, globular fold (similar to other cytokines), stabilised by 3 disulphide bonds []. One half of the structure is dominated by a 4 alpha-helix bundle with a left-handed twist []. The helices are anti-parallel, with 2 overhand connections, which fall into a 2-stranded anti-parallel beta-sheet [].; GO: 0005136 interleukin-4 receptor binding, 0008083 growth factor activity, 0006955 immune response, 0005576 extracellular region; PDB: 1HIK_A 1HZI_A 1ITI_A 2INT_A 1RCB_A 1CYL_A 3QB7_A 1BBN_A 2B8Z_A 1ITM_A ....
Probab=21.02 E-value=49 Score=26.61 Aligned_cols=12 Identities=42% Similarity=0.617 Sum_probs=10.1
Q ss_pred cccHHHHHhhhc
Q 029519 79 MMTLEDFLAKAG 90 (192)
Q Consensus 79 eMTLEDFLvKAG 90 (192)
..||+|||.+-.
T Consensus 98 ~ttLkdFLe~Lk 109 (117)
T PF00727_consen 98 QTTLKDFLERLK 109 (117)
T ss_dssp EEEHHHHHHHHH
T ss_pred hhhHHHHHHHHH
Confidence 699999998754
No 32
>PF12221 HflK_N: Bacterial membrane protein N terminal; InterPro: IPR020980 HflK is a bacterial membrane protein which is thought, together with the HflC protein, to form a membrane protease complex whose activity is modulated by the GTPase HflX []. This entry represents the N-terminal, membrane-spanning, region of of HflK responsible for anchoring the protein in the bacterial membrane. It is often found in association with PF01145 from PFAM.
Probab=20.47 E-value=66 Score=21.40 Aligned_cols=11 Identities=18% Similarity=0.691 Sum_probs=9.4
Q ss_pred CHHHHHHHHHh
Q 029519 55 SVDDVWREIVS 65 (192)
Q Consensus 55 TVDEVWrdIq~ 65 (192)
-.|||||.++.
T Consensus 22 DLdel~r~l~~ 32 (42)
T PF12221_consen 22 DLDELFRKLQD 32 (42)
T ss_pred CHHHHHHHHHH
Confidence 46999999986
No 33
>cd04405 RhoGAP_BRCC3-like RhoGAP_BRCC3-like: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of BRCC3-like proteins. This subgroup also contains two groups of closely related proteins, BRCC3 and DEPDC7, which both contain a C-terminal RhoGAP-like domain and an N-terminal DEP (Disheveled, Egl-10, and Pleckstrin) domain. The function(s) of BRCC3 and DEPDC7 are unknown. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=20.37 E-value=43 Score=29.85 Aligned_cols=16 Identities=19% Similarity=0.385 Sum_probs=12.2
Q ss_pred CCCCCHHHHHHHHHhC
Q 029519 51 GAMKSVDDVWREIVSG 66 (192)
Q Consensus 51 lskKTVDEVWrdIq~~ 66 (192)
++.+-|+|||+++--.
T Consensus 1 ls~~~v~evW~~~tl~ 16 (235)
T cd04405 1 LSPEVVEEIWKEQTLI 16 (235)
T ss_pred CCHHHHHHHHHHHHHH
Confidence 3456799999998754
Done!