Query 029519
Match_columns 192
No_of_seqs 162 out of 266
Neff 4.0
Searched_HMMs 29240
Date Mon Mar 25 23:29:22 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029519.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/029519hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1dh3_A Transcription factor CR 98.6 1.5E-08 5.1E-13 69.4 2.6 26 165-190 1-26 (55)
2 2wt7_A Proto-oncogene protein 97.8 8.9E-06 3E-10 56.5 2.8 27 164-190 1-27 (63)
3 1t2k_D Cyclic-AMP-dependent tr 97.2 0.00016 5.5E-09 49.5 2.6 26 165-190 1-26 (61)
4 2dgc_A Protein (GCN4); basic d 97.2 0.00018 6.1E-09 50.2 2.5 19 172-190 16-34 (63)
5 1jnm_A Proto-oncogene C-JUN; B 96.2 0.0032 1.1E-07 43.2 3.2 25 166-190 2-26 (62)
6 3a5t_A Transcription factor MA 94.6 0.034 1.2E-06 42.6 4.3 31 158-188 30-60 (107)
7 1ci6_A Transcription factor AT 92.6 0.052 1.8E-06 37.5 2.0 26 165-190 2-27 (63)
8 1gd2_E Transcription factor PA 83.9 0.77 2.6E-05 32.5 3.0 22 167-188 10-31 (70)
9 1gu4_A CAAT/enhancer binding p 82.0 0.8 2.7E-05 33.1 2.5 24 165-188 15-38 (78)
10 1hjb_A Ccaat/enhancer binding 81.1 0.91 3.1E-05 33.4 2.6 29 161-189 11-39 (87)
11 1skn_P DNA-binding domain of S 56.3 13 0.00046 27.7 4.1 31 158-188 55-85 (92)
12 2p22_D Hypothetical 12.0 kDa p 54.0 3.4 0.00012 30.2 0.6 10 1-10 1-10 (79)
13 2wt7_B Transcription factor MA 47.6 20 0.00069 26.4 3.9 27 160-186 22-48 (90)
14 1sv0_A ETS DNA-binding protein 37.5 12 0.0004 27.0 1.2 44 48-91 7-60 (85)
15 2jws_A GA88; evolution, foldin 35.1 13 0.00046 25.4 1.1 10 52-61 35-44 (56)
16 2dkx_A SAM pointed domain-cont 34.1 14 0.00048 27.1 1.2 12 79-90 62-73 (96)
17 1x66_A Friend leukemia integra 33.9 13 0.00045 27.4 1.0 46 47-92 20-76 (98)
18 1sxd_A GA repeat binding prote 28.0 21 0.00071 26.0 1.2 44 47-90 19-72 (91)
19 2jv3_A ETS1 proto-oncogene; ET 27.9 19 0.00066 27.1 1.1 45 47-91 37-91 (110)
20 1sxe_A Transcriptional regulat 27.8 17 0.00057 26.8 0.7 45 47-91 23-78 (97)
21 2ytu_A Friend leukemia integra 27.3 21 0.00073 27.7 1.2 46 47-92 34-90 (128)
22 2e8p_A ELF3 protein; cell-free 27.0 22 0.00076 26.1 1.2 44 48-91 21-76 (92)
23 1sv0_C Modulator of the activi 26.1 24 0.00081 24.9 1.2 12 79-90 51-62 (82)
24 2op5_A Hypothetical protein; f 24.9 17 0.00057 27.5 0.2 13 51-63 26-38 (117)
25 1iq3_A Ralbp1-interacting prot 23.7 55 0.0019 23.4 2.8 30 51-89 53-82 (110)
26 2g48_C Islet amyloid polypepti 20.9 34 0.0012 21.5 1.0 12 81-92 11-22 (37)
27 1ji7_A ETS-related protein TEL 20.6 36 0.0012 24.5 1.3 45 48-92 9-63 (89)
28 2d48_A Interleukin-4; four hel 20.6 33 0.0011 27.0 1.1 14 79-92 106-119 (129)
29 4gb3_1 Coat protein 1; capsid 20.4 26 0.0009 30.6 0.6 17 77-93 59-75 (281)
No 1
>1dh3_A Transcription factor CREB; protein-DNA complex, transcription/DNA complex; HET: DNA; 3.00A {Mus musculus} SCOP: h.1.3.1
Probab=98.61 E-value=1.5e-08 Score=69.41 Aligned_cols=26 Identities=38% Similarity=0.535 Sum_probs=23.7
Q ss_pred HHHHHhhhhhHHHHHHHHHHhhhhhh
Q 029519 165 QRQRRMIKNRESAARSRERKQVTKLC 190 (192)
Q Consensus 165 r~~~r~~~nresa~rsr~rkq~~~~~ 190 (192)
+|++|||+|||||++||.|||+|+-+
T Consensus 1 kr~rR~~~NResA~rSR~RKk~~~~~ 26 (55)
T 1dh3_A 1 KREVRLMKNREAARESRRKKKEYVKS 26 (55)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 47899999999999999999999853
No 2
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=97.82 E-value=8.9e-06 Score=56.48 Aligned_cols=27 Identities=26% Similarity=0.373 Sum_probs=25.0
Q ss_pred HHHHHHhhhhhHHHHHHHHHHhhhhhh
Q 029519 164 QQRQRRMIKNRESAARSRERKQVTKLC 190 (192)
Q Consensus 164 ~r~~~r~~~nresa~rsr~rkq~~~~~ 190 (192)
|+|++|+++||++|++||.||++|+.+
T Consensus 1 Ekr~rrrerNR~AA~rcR~rKk~~~~~ 27 (63)
T 2wt7_A 1 EKRRIRRERNKMAAAKCRNRRRELTDT 27 (63)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 579999999999999999999999865
No 3
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=97.22 E-value=0.00016 Score=49.54 Aligned_cols=26 Identities=31% Similarity=0.514 Sum_probs=23.7
Q ss_pred HHHHHhhhhhHHHHHHHHHHhhhhhh
Q 029519 165 QRQRRMIKNRESAARSRERKQVTKLC 190 (192)
Q Consensus 165 r~~~r~~~nresa~rsr~rkq~~~~~ 190 (192)
+|++|+++||++|.+||.||++|+.+
T Consensus 1 kR~~r~erNr~AA~k~R~rKk~~~~~ 26 (61)
T 1t2k_D 1 KRRKFLERNRAAASRSRQKRKVWVQS 26 (61)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 47899999999999999999999864
No 4
>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D
Probab=97.17 E-value=0.00018 Score=50.24 Aligned_cols=19 Identities=42% Similarity=0.407 Sum_probs=17.0
Q ss_pred hhhHHHHHHHHHHhhhhhh
Q 029519 172 KNRESAARSRERKQVTKLC 190 (192)
Q Consensus 172 ~nresa~rsr~rkq~~~~~ 190 (192)
+|||+|+|||.|||+|+-+
T Consensus 16 rNreAArrsR~RK~~~~~~ 34 (63)
T 2dgc_A 16 RNTEAARRSRARKLQRMKQ 34 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHHHHH
Confidence 3999999999999999753
No 5
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=96.23 E-value=0.0032 Score=43.16 Aligned_cols=25 Identities=32% Similarity=0.426 Sum_probs=21.1
Q ss_pred HHHHhhhhhHHHHHHHHHHhhhhhh
Q 029519 166 RQRRMIKNRESAARSRERKQVTKLC 190 (192)
Q Consensus 166 ~~~r~~~nresa~rsr~rkq~~~~~ 190 (192)
+++|..+||++|++||.||++|+.+
T Consensus 2 ~errr~rNr~AA~k~R~rKk~~~~~ 26 (62)
T 1jnm_A 2 AERKRMRNRIAASKSRKRKLERIAR 26 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 4566778999999999999999753
No 6
>3a5t_A Transcription factor MAFG; protein-DNA complex, BZIP factor, acetylation, DNA-binding, isopeptide bond, nucleus; 2.80A {Mus musculus}
Probab=94.63 E-value=0.034 Score=42.64 Aligned_cols=31 Identities=29% Similarity=0.370 Sum_probs=26.5
Q ss_pred hhhHHHHHHHHHhhhhhHHHHHHHHHHhhhh
Q 029519 158 PLDKAAQQRQRRMIKNRESAARSRERKQVTK 188 (192)
Q Consensus 158 ~~~~~~~r~~~r~~~nresa~rsr~rkq~~~ 188 (192)
..+...-+.++|..|||++|+++|.||++..
T Consensus 30 ~~e~~~lK~~RR~lKNR~yAq~CR~rk~~~~ 60 (107)
T 3a5t_A 30 KEEIIQLKQRRRTLKNRGYAASCRVKRVTQK 60 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Confidence 4466777889999999999999999998754
No 7
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=92.62 E-value=0.052 Score=37.46 Aligned_cols=26 Identities=23% Similarity=0.480 Sum_probs=18.2
Q ss_pred HHHHHhhhhhHHHHHHHHHHhhhhhh
Q 029519 165 QRQRRMIKNRESAARSRERKQVTKLC 190 (192)
Q Consensus 165 r~~~r~~~nresa~rsr~rkq~~~~~ 190 (192)
+|.+++..||.+|+|+|.||+++.-+
T Consensus 2 k~~rKr~rNr~AA~R~R~KKk~~~~~ 27 (63)
T 1ci6_A 2 KKLKKMEQNKTAATRYRQKKRAEQEA 27 (63)
T ss_dssp ------CCHHHHHHHHHHHHHHHHHH
T ss_pred chHhHHHHhHHHHHHHHHHHHHHHHH
Confidence 57888999999999999999988754
No 8
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=83.88 E-value=0.77 Score=32.53 Aligned_cols=22 Identities=27% Similarity=0.342 Sum_probs=20.4
Q ss_pred HHHhhhhhHHHHHHHHHHhhhh
Q 029519 167 QRRMIKNRESAARSRERKQVTK 188 (192)
Q Consensus 167 ~~r~~~nresa~rsr~rkq~~~ 188 (192)
.||...||++++..|.||++|+
T Consensus 10 ~kR~~qNR~AQRafReRK~~~i 31 (70)
T 1gd2_E 10 SKRKAQNRAAQRAFRKRKEDHL 31 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHH
Confidence 5788999999999999999996
No 9
>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA complex, transcription factor, BZIP, C/EBP; 1.80A {Homo sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A 1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A
Probab=82.01 E-value=0.8 Score=33.06 Aligned_cols=24 Identities=17% Similarity=0.311 Sum_probs=18.0
Q ss_pred HHHHHhhhhhHHHHHHHHHHhhhh
Q 029519 165 QRQRRMIKNRESAARSRERKQVTK 188 (192)
Q Consensus 165 r~~~r~~~nresa~rsr~rkq~~~ 188 (192)
....|-.+|.+.|+|||.+++...
T Consensus 15 ~Y~~rR~rNN~AakrSR~krk~r~ 38 (78)
T 1gu4_A 15 EYKIRRERNNIAVRKSRDKAKMRN 38 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHH
Confidence 333345789999999999987654
No 10
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=81.12 E-value=0.91 Score=33.41 Aligned_cols=29 Identities=21% Similarity=0.354 Sum_probs=21.0
Q ss_pred HHHHHHHHHhhhhhHHHHHHHHHHhhhhh
Q 029519 161 KAAQQRQRRMIKNRESAARSRERKQVTKL 189 (192)
Q Consensus 161 ~~~~r~~~r~~~nresa~rsr~rkq~~~~ 189 (192)
+.++....|-.+|.+.|+|||.+++....
T Consensus 11 k~d~~Y~~rR~rNN~AarrSR~krk~r~~ 39 (87)
T 1hjb_A 11 KHSDEYKIRRERNNIAVRKSRDKAKMRNL 39 (87)
T ss_dssp TTSHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 33344445557899999999999887654
No 11
>1skn_P DNA-binding domain of SKN-1; complex (transcription factor/DNA), transcription/DNA complex; HET: DNA LDA; 2.50A {Caenorhabditis elegans} SCOP: a.37.1.1
Probab=56.29 E-value=13 Score=27.72 Aligned_cols=31 Identities=23% Similarity=0.294 Sum_probs=25.8
Q ss_pred hhhHHHHHHHHHhhhhhHHHHHHHHHHhhhh
Q 029519 158 PLDKAAQQRQRRMIKNRESAARSRERKQVTK 188 (192)
Q Consensus 158 ~~~~~~~r~~~r~~~nresa~rsr~rkq~~~ 188 (192)
.......|..+|-.|||.-|.+.|+||-+..
T Consensus 55 ~~Ql~~ir~~RRR~KNr~AA~~CRkrK~~~~ 85 (92)
T 1skn_P 55 EYQRQLIRKIRRRGKNKVAARTCRQRRTDRH 85 (92)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 3456677888899999999999999997654
No 12
>2p22_D Hypothetical 12.0 kDa protein in ADE3-Ser2 intergenic region; endosome, trafficking complex, VPS23, VPS28, VPS37, MVB12; 2.70A {Saccharomyces cerevisiae}
Probab=54.03 E-value=3.4 Score=30.16 Aligned_cols=10 Identities=40% Similarity=0.833 Sum_probs=9.5
Q ss_pred CCHHHHHHhh
Q 029519 1 MTVDGILRNV 10 (192)
Q Consensus 1 MNmDe~L~nV 10 (192)
||||++||+|
T Consensus 1 ~~~e~~Lr~I 10 (79)
T 2p22_D 1 MNVEELLRRI 10 (79)
T ss_dssp CHHHHHHHHS
T ss_pred CCHHHHHhcC
Confidence 8999999987
No 13
>2wt7_B Transcription factor MAFB; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 2wty_A* 1k1v_A
Probab=47.55 E-value=20 Score=26.44 Aligned_cols=27 Identities=26% Similarity=0.367 Sum_probs=22.1
Q ss_pred hHHHHHHHHHhhhhhHHHHHHHHHHhh
Q 029519 160 DKAAQQRQRRMIKNRESAARSRERKQV 186 (192)
Q Consensus 160 ~~~~~r~~~r~~~nresa~rsr~rkq~ 186 (192)
+...-+-.+|-.|||-.|+-.|.||..
T Consensus 22 ev~~lKq~RRtlKNRgyAq~CR~Kr~~ 48 (90)
T 2wt7_B 22 EVIRLKQKRRTLKNRGYAQSCRYKRVQ 48 (90)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhhHHHHHHHHHHHH
Confidence 455566778899999999999999864
No 14
>1sv0_A ETS DNA-binding protein pokkuri; alpha-helix, 3(10) helix, transcription; 2.07A {Drosophila melanogaster} SCOP: a.60.1.1 PDB: 1sv4_A
Probab=37.54 E-value=12 Score=27.01 Aligned_cols=44 Identities=16% Similarity=0.096 Sum_probs=25.2
Q ss_pred CCCCCCCCHHHHHHHHHhCccc----c--hhhhhhc---c-cccHHHHHhhhcc
Q 029519 48 VSAGAMKSVDDVWREIVSGEKK----E--MKEEAID---E-MMTLEDFLAKAGA 91 (192)
Q Consensus 48 ~~~lskKTVDEVWrdIq~~~~~----~--~~~~~~~---~-eMTLEDFLvKAGv 91 (192)
|....-=|.+.|+.=|+=.... . ...-... . .||.|||+.+++.
T Consensus 7 p~DP~~Ws~~~V~~WL~W~~~ef~L~~i~~~~F~m~G~~LC~ls~edF~~~~p~ 60 (85)
T 1sv0_A 7 PSDPRLWSREDVLVFLRFCVREFDLPKLDFDLFQMNGKRLCLLTRADFGHRCPG 60 (85)
T ss_dssp CSSGGGCCHHHHHHHHHHHHHHTTCCCCCGGGGCSCHHHHTTCCHHHHHHHSTT
T ss_pred CCChhhCCHHHHHHHHHHHHHccCCCCCChhhCCCCHHHHHcCCHHHHHHHcCC
Confidence 4445556788888777643111 0 0000011 1 6999999999873
No 15
>2jws_A GA88; evolution, folding, protein design, protein structure, de novo protein; NMR {Artificial gene} PDB: 2kdl_A 2lhg_A 2lhc_A 2lhd_A 2lhe_A 2kdm_A 2jwu_A
Probab=35.06 E-value=13 Score=25.43 Aligned_cols=10 Identities=40% Similarity=0.910 Sum_probs=8.8
Q ss_pred CCCCHHHHHH
Q 029519 52 AMKSVDDVWR 61 (192)
Q Consensus 52 skKTVDEVWr 61 (192)
..||||+||-
T Consensus 35 nakTVeGV~a 44 (56)
T 2jws_A 35 NAKTVEGVWT 44 (56)
T ss_dssp TCSCHHHHHH
T ss_pred cccccccccc
Confidence 5799999996
No 16
>2dkx_A SAM pointed domain-containing ETS transcription factor; cell-free protein synthesis, protein regulation, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=34.08 E-value=14 Score=27.11 Aligned_cols=12 Identities=25% Similarity=0.379 Sum_probs=11.0
Q ss_pred cccHHHHHhhhc
Q 029519 79 MMTLEDFLAKAG 90 (192)
Q Consensus 79 eMTLEDFLvKAG 90 (192)
.||.|||+.+++
T Consensus 62 ~lskedF~~~~p 73 (96)
T 2dkx_A 62 AMSEEQFRQRSP 73 (96)
T ss_dssp HSCHHHHHHHCS
T ss_pred hCCHHHHHHHcC
Confidence 699999999986
No 17
>1x66_A Friend leukemia integration 1 transcription factor; cell-free protein synthesis, protein regulation, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=33.86 E-value=13 Score=27.37 Aligned_cols=46 Identities=20% Similarity=0.110 Sum_probs=27.1
Q ss_pred CCCCCCCCCHHHHHHHHHhCcc----cc--hhhh-hhcc----cccHHHHHhhhccc
Q 029519 47 AVSAGAMKSVDDVWREIVSGEK----KE--MKEE-AIDE----MMTLEDFLAKAGAV 92 (192)
Q Consensus 47 ~~~~lskKTVDEVWrdIq~~~~----~~--~~~~-~~~~----eMTLEDFLvKAGvv 92 (192)
++....-=|.++|+.=|+-..+ .. ...= ...+ .||.|||+.+++.+
T Consensus 20 ip~DP~~Ws~~~V~~WL~W~~~ef~L~~v~~~~F~~m~G~~LC~ls~edF~~~~~~~ 76 (98)
T 1x66_A 20 VPADPTLWTQEHVRQWLEWAIKEYSLMEIDTSFFQNMDGKELCKMNKEDFLRATTLY 76 (98)
T ss_dssp CCSSGGGCCTTHHHHHHHHHHHHTTCCSCCGGGGTTCCHHHHHHCCHHHHHTTSCHH
T ss_pred CCCChhhcCHHHHHHHHHHHHHhcCCCCCChhhCCCCCHHHHHcCCHHHHHHHcCCC
Confidence 5566666788888887664311 11 1000 1111 59999999998653
No 18
>1sxd_A GA repeat binding protein, alpha; alpha helical, transcription, signaling protein; NMR {Mus musculus} SCOP: a.60.1.1
Probab=28.03 E-value=21 Score=26.00 Aligned_cols=44 Identities=20% Similarity=0.150 Sum_probs=24.6
Q ss_pred CCCCCCCCCHHHHHHHHHhCccc----ch--hhhhhc---c-cccHHHHHhhhc
Q 029519 47 AVSAGAMKSVDDVWREIVSGEKK----EM--KEEAID---E-MMTLEDFLAKAG 90 (192)
Q Consensus 47 ~~~~lskKTVDEVWrdIq~~~~~----~~--~~~~~~---~-eMTLEDFLvKAG 90 (192)
+|....-=|.+.|+.=|+-..+. .. ..-... . .||.|||+.+++
T Consensus 19 ip~DP~~Ws~~~V~~WL~W~~~ef~L~~v~~~~f~m~G~~LC~ls~edF~~~~p 72 (91)
T 1sxd_A 19 IPYDPIHWSTDQVLHWVVWVMKEFSMTDIDLTTLNISGRELCSLNQEDFFQRVP 72 (91)
T ss_dssp CCSSGGGCCHHHHHHHHHHHHHHTTCCCSCSGGGCSCHHHHHHSCHHHHHHHCT
T ss_pred CCCChhhCCHHHHHHHHHHHHHccCCCCCChhhCCCCHHHHHcCCHHHHHHHCC
Confidence 34455566788888766533111 00 000011 1 599999999975
No 19
>2jv3_A ETS1 proto-oncogene; ETS-1 pointed (PNT) domain, MAP kinase phosphorylation site, alpha-helical bundle, transcription factor, DNA-binding, nucleus; NMR {Mus musculus} PDB: 2kmd_A*
Probab=27.91 E-value=19 Score=27.06 Aligned_cols=45 Identities=11% Similarity=-0.007 Sum_probs=27.8
Q ss_pred CCCCCCCCCHHHHHHHHHhCccc----c--hhhhhhc---c-cccHHHHHhhhcc
Q 029519 47 AVSAGAMKSVDDVWREIVSGEKK----E--MKEEAID---E-MMTLEDFLAKAGA 91 (192)
Q Consensus 47 ~~~~lskKTVDEVWrdIq~~~~~----~--~~~~~~~---~-eMTLEDFLvKAGv 91 (192)
+|....-=|.+.|+.=|+-..+. + ...-... . .||.|||+.+++.
T Consensus 37 ip~DP~~WS~~~V~~WL~W~~~ef~L~~v~~~~F~m~G~~LC~ls~edF~~~~p~ 91 (110)
T 2jv3_A 37 IPKDPRQWTETHVRDWVMWAVNEFSLKGVDFQKFCMSGAALCALGKECFLELAPD 91 (110)
T ss_dssp CCSSSTTCCHHHHHHHHHHHHHHHTCCCCCTTTTCCCHHHHHHTHHHHHHHHSCH
T ss_pred CCCChHhCCHHHHHHHHHHHHHhcCCCCCChhcCCCCHHHHHhCCHHHHHHHcCC
Confidence 46667778899998877643111 0 0000011 1 6999999999875
No 20
>1sxe_A Transcriptional regulator ERG; alpha helical, signaling protein; NMR {Homo sapiens} SCOP: a.60.1.1
Probab=27.84 E-value=17 Score=26.79 Aligned_cols=45 Identities=22% Similarity=0.164 Sum_probs=28.4
Q ss_pred CCCCCCCCCHHHHHHHHHhCccc----c--hhhh-hhcc----cccHHHHHhhhcc
Q 029519 47 AVSAGAMKSVDDVWREIVSGEKK----E--MKEE-AIDE----MMTLEDFLAKAGA 91 (192)
Q Consensus 47 ~~~~lskKTVDEVWrdIq~~~~~----~--~~~~-~~~~----eMTLEDFLvKAGv 91 (192)
++....-=|.+.|+.=|+-..+. . ...= ...+ .||.|||+.+++.
T Consensus 23 ip~DP~~Ws~~~V~~WL~W~~~ef~L~~i~~~~F~~m~G~~LC~lt~edF~~~~p~ 78 (97)
T 1sxe_A 23 VPADPTLWSTDHVRQWLEWAVKEYGLPDVNILLFQNIDGKELCKMTKDDFQRLTPS 78 (97)
T ss_dssp SCSSTTSCCHHHHHHHHHHHHHHHTCSSCCGGGSTTCCHHHHTTCCHHHHTTTSCH
T ss_pred CCcchhccCHHHHHHHHHHHHHhcCCCCCCHHhcCCCCHHHHHhCCHHHHHHHcCC
Confidence 56777888999999877643111 1 0000 1111 6999999999874
No 21
>2ytu_A Friend leukemia integration 1 transcription factor; cell-free protein synthesis, protein regulation, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=27.29 E-value=21 Score=27.69 Aligned_cols=46 Identities=20% Similarity=0.110 Sum_probs=27.9
Q ss_pred CCCCCCCCCHHHHHHHHHhCcc----cc--hhhh-hhcc----cccHHHHHhhhccc
Q 029519 47 AVSAGAMKSVDDVWREIVSGEK----KE--MKEE-AIDE----MMTLEDFLAKAGAV 92 (192)
Q Consensus 47 ~~~~lskKTVDEVWrdIq~~~~----~~--~~~~-~~~~----eMTLEDFLvKAGvv 92 (192)
++....-=|.+.||.=|+-... .. ...= ...+ .||.||||.+++..
T Consensus 34 IP~DP~~WS~~~V~~WL~Wa~~ef~L~~id~~~Fq~mnGk~LC~LskeDF~~~~p~~ 90 (128)
T 2ytu_A 34 VPADPTLWTQEHVRQWLEWAIKEYSLMEIDTSFFQNMDGKELCKMNKEDFLRATTLY 90 (128)
T ss_dssp CCSCGGGCCTTHHHHHHHHHHHHTCCCSCCCGGGSSCCTTHHHHCCHHHHHHHSCHH
T ss_pred CCcchhhCCHHHHHHHHHHHHHhcCCCCCChHhCCCCCHHHHHcCCHHHHHHHcCCC
Confidence 5666677788899887764311 11 0000 0112 59999999998764
No 22
>2e8p_A ELF3 protein; cell-free protein synthesis, protein regulation, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=26.99 E-value=22 Score=26.10 Aligned_cols=44 Identities=16% Similarity=0.048 Sum_probs=25.3
Q ss_pred CCCCCCCCHHHHHHHHHhCcc---cchhhh--h---hcc----cccHHHHHhhhcc
Q 029519 48 VSAGAMKSVDDVWREIVSGEK---KEMKEE--A---IDE----MMTLEDFLAKAGA 91 (192)
Q Consensus 48 ~~~lskKTVDEVWrdIq~~~~---~~~~~~--~---~~~----eMTLEDFLvKAGv 91 (192)
+....-=|.+.||.=|+-.-+ -+.... . ..+ .||.||||.+++.
T Consensus 21 ~~dP~~Ws~~~V~~WL~Wavke~~~dl~~i~~~~f~m~G~~LC~mskedF~~~~p~ 76 (92)
T 2e8p_A 21 GEQPQFWSKTQVLDWISYQVEKNKYDASAIDFSRCDMDGATLCNCALEELRLVFGP 76 (92)
T ss_dssp SSCGGGCCHHHHHHHHHHHHHHTTCCCSSCCTTTCCCCSHHHHHSCHHHHHHHSGG
T ss_pred CCChhhcCHHHHHHHHHHHHHHhCCCCCCCChhhcCCCHHHHHcCCHHHHHHHcCC
Confidence 334455688888887764411 110000 0 111 5999999999875
No 23
>1sv0_C Modulator of the activity of ETS CG15085-PA; alpha-helix, 3(10) helix, transcription; 2.07A {Drosophila melanogaster} SCOP: a.60.1.1
Probab=26.11 E-value=24 Score=24.87 Aligned_cols=12 Identities=25% Similarity=0.642 Sum_probs=11.2
Q ss_pred cccHHHHHhhhc
Q 029519 79 MMTLEDFLAKAG 90 (192)
Q Consensus 79 eMTLEDFLvKAG 90 (192)
.||.|||+.+++
T Consensus 51 ~ls~edF~~~~p 62 (82)
T 1sv0_C 51 LMSLDMYLCRVP 62 (82)
T ss_dssp HCCHHHHHHHCT
T ss_pred hCCHHHHHhhCC
Confidence 699999999987
No 24
>2op5_A Hypothetical protein; ferredoxin-like protein, structural genomics, joint center F structural genomics, JCSG; 2.20A {Uncultured marine organism} SCOP: d.58.4.22
Probab=24.94 E-value=17 Score=27.51 Aligned_cols=13 Identities=46% Similarity=0.716 Sum_probs=10.1
Q ss_pred CCCCCHHHHHHHH
Q 029519 51 GAMKSVDDVWREI 63 (192)
Q Consensus 51 lskKTVDEVWrdI 63 (192)
|--|+.||||.+=
T Consensus 26 lflksldevwsed 38 (117)
T 2op5_A 26 LFLKSLDEVWSED 38 (117)
T ss_dssp HHHTTHHHHSCHH
T ss_pred HHHHHHHHHHHHH
Confidence 4458999999864
No 25
>1iq3_A Ralbp1-interacting protein (partner of ralbp1); EF-hand domain, POB1 EH domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: a.39.1.6
Probab=23.66 E-value=55 Score=23.37 Aligned_cols=30 Identities=20% Similarity=0.297 Sum_probs=21.0
Q ss_pred CCCCCHHHHHHHHHhCcccchhhhhhcccccHHHHHhhh
Q 029519 51 GAMKSVDDVWREIVSGEKKEMKEEAIDEMMTLEDFLAKA 89 (192)
Q Consensus 51 lskKTVDEVWrdIq~~~~~~~~~~~~~~eMTLEDFLvKA 89 (192)
++...++++|+++-..+ .+.+++++|+.--
T Consensus 53 l~~~el~~i~~~~D~d~---------dG~I~~~EF~~~m 82 (110)
T 1iq3_A 53 LSIPELSYIWELSDADC---------DGALTLPEFCAAF 82 (110)
T ss_dssp CSSCCHHHHHHHHCSSS---------CSEEEHHHHHHHH
T ss_pred CCHHHHHHHHHHHcCCC---------CCcCcHHHHHHHH
Confidence 56778999999764331 3568899997643
No 26
>2g48_C Islet amyloid polypeptide; protein-peptide complex, hydrolase; 2.60A {Homo sapiens} PDB: 2kb8_A 3hgz_D 2l86_A 2kj7_A
Probab=20.93 E-value=34 Score=21.54 Aligned_cols=12 Identities=25% Similarity=0.465 Sum_probs=10.5
Q ss_pred cHHHHHhhhccc
Q 029519 81 TLEDFLAKAGAV 92 (192)
Q Consensus 81 TLEDFLvKAGvv 92 (192)
.|.|||.|+|-+
T Consensus 11 rla~~LsrSg~~ 22 (37)
T 2g48_C 11 RLANFLVHSSNN 22 (37)
T ss_pred HHHHHHHhhccc
Confidence 589999999866
No 27
>1ji7_A ETS-related protein TEL1; helical polymer, transcription; 1.45A {Homo sapiens} SCOP: a.60.1.1 PDB: 2qar_A 2qb0_A 1lky_A 1lky_B 2qb1_A
Probab=20.59 E-value=36 Score=24.52 Aligned_cols=45 Identities=20% Similarity=0.136 Sum_probs=26.4
Q ss_pred CCCCCCCCHHHHHHHHHhCccc----ch--hhhhhc----ccccHHHHHhhhccc
Q 029519 48 VSAGAMKSVDDVWREIVSGEKK----EM--KEEAID----EMMTLEDFLAKAGAV 92 (192)
Q Consensus 48 ~~~lskKTVDEVWrdIq~~~~~----~~--~~~~~~----~eMTLEDFLvKAGvv 92 (192)
+....-=|.++|+.=|.-.... .. ..-... -.||.|||+.+++..
T Consensus 9 ~~DP~~WS~~~V~~WL~w~~~ef~L~~~~~~~f~mdGk~Lc~Ls~edF~~~~p~~ 63 (89)
T 1ji7_A 9 RLQPIYWSRDDVAQWLKWAENEFSLRPIDSNTFEMNGKALLLLTKEDFRYRSPHS 63 (89)
T ss_dssp CSCGGGCCHHHHHHHHHHHHHHTTCSCCCTTTTCSCHHHHTTCCHHHHHHHCTTT
T ss_pred CCChhhCCHHHHHHHHHHHHHhcCCCCCchhcCCCCHHHHHcCCHHHHHhHcCCc
Confidence 4455667899997766543111 00 000011 269999999998853
No 28
>2d48_A Interleukin-4; four helix bundle, cytokine; 1.65A {Homo sapiens} PDB: 1itl_A 1itm_A 2b90_A 1cyl_A 1hik_A 1iar_A 1rcb_A 2b8u_A 2cyk_A 2int_A 3bpl_A* 3bpn_A* 2b8y_A 1hij_A 1hzi_A 2b8z_A 1bbn_A 1bcn_A 1iti_A 2b8x_A ...
Probab=20.57 E-value=33 Score=27.04 Aligned_cols=14 Identities=36% Similarity=0.596 Sum_probs=11.0
Q ss_pred cccHHHHHhhhccc
Q 029519 79 MMTLEDFLAKAGAV 92 (192)
Q Consensus 79 eMTLEDFLvKAGvv 92 (192)
..||+|||.+-..+
T Consensus 106 ~ttLkDFLerLK~i 119 (129)
T 2d48_A 106 QSTLENFLERLKTI 119 (129)
T ss_dssp EEEHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHH
Confidence 59999999886543
No 29
>4gb3_1 Coat protein 1; capsid protein; HET: PLM MYR; 2.74A {Human coxsackievirus B3} PDB: 1cov_1* 1jew_1 1oop_A* 1mqt_A*
Probab=20.38 E-value=26 Score=30.65 Aligned_cols=17 Identities=29% Similarity=0.483 Sum_probs=14.8
Q ss_pred cccccHHHHHhhhcccc
Q 029519 77 DEMMTLEDFLAKAGAVE 93 (192)
Q Consensus 77 ~~eMTLEDFLvKAGvv~ 93 (192)
..|+++|-||-|+++|.
T Consensus 59 ~~EtsIEnFlsRsacV~ 75 (281)
T 4gb3_1 59 RSESTIENFLCRSACVY 75 (281)
T ss_dssp CGGGBHHHHHCSCEEEE
T ss_pred cchhhHhhhhhhhhhee
Confidence 45999999999999873
Done!